Barrick Lab :: Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing and Presenting

• Barrick Lab Style Guide
  How to format manuscript files.
• Introduction to Experimental Design
  How to design effective experiments.
• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Science Quotations
  Memorable and humorous sayings related to our research.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Escherichia coli REL606 Genome Resources: Design Primers | Blast | Genbank | Browser |BioCyc
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc
  * tdk/kan sequence as used by Berardinis et al., 2012.
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC – Lonestar | Stampede | Corral | Ranch
  Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Statistics

• Tukey's Jackknife