Barrick Lab :: ProceduresVeracodeGoldenGateGenotyping

---+ Veracode Golden Gate Genotyping

---++ How to process data from RTSF

   1 Open <nop>GenomeStudio.
   1 Create a new genotyping project.
   1 Choose the option to "Load sample intensities by selecting directories with intensity files."
   1 For "SNP manifest" select the OPA file describing the assay.
   1 For "Data" Select the <nop>GenomeStudio Data folder, then "add" the folder of data for this assay by clicking on the + next to it.
   1 Use the menu item Analysis > Reports > Wizard.
   1 Select "Final Report". Select format: Jeff. Choose Next > and Finish.

The resulting tab-delimited file can be input into Rohan's R scripts for analysis.

Barrick Lab > ProtocolList > ProceduresVeracodeGoldenGateGenotyping

Contributors to this topic

JeffreyBarrick

Topic revision: r1 - 2010-08-23 - 17:50:49 - Main.JeffreyBarrick