Instructions for how to analyze fluctuation test data using the command line. Please see this page for information regarding how to conduct a fluctuation analysis.

Installing rSalvador

Before the Rscript can be used, rSalvador needs to be installed locally. Unfortuantely this can't be done using normal R commands (in other words install.packages("rsalvador") doesn't work) rSalvador should be cloned from github here

  1. git clone https://github.com/eeeeeric/rSalvador.git
  2. cd rSalvador
  3. R CMD cherck rsalvador
  4. R CMD INSTALL rsalvador

Installing Barricklab general github

If you havn't already installed the general Barricklab project from github do so. It is assumed you install it in ~/src but can be installed anywhere and adjusted accordingly. Github project is located [[https://github.com/barricklab/barricklab.git

][here.]]

  1. git clone https://github.com/barricklab/barricklab.git


Executing the fluxxer.R script

Things you need

A .csv file

-- Main.DanielDeatherage - 07 Dec 2017


This topic: Lab > WebHome > ProtocolsFluctuationTests > FluctuationAnalysis
Topic revision: r2 - 08 Dec 2017 - 00:41:23 - Main.DanielDeatherage