Bacterial Genetic Code (NCBI Translation Table 11)
AAs = FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG
Starts = ---M---------------M------------MMMM---------------M------------
Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
Source: NCBI
http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi
To convert a nucleotide position within a gene to an amino acid position within a gene (both indexed starting at 1) use the following equation: AA = floor[ (NT-1) / 3 ] + 1.
Stop codon nomenclature
- TAG
- amber
- TAA
- ochre
- TGA
- opal or umber