Bacterial Genetic Code (NCBI Translation Table 11)

  AAs  = FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 
Starts = ---M---------------M------------MMMM---------------M------------
Base1  = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
Base2  = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Base3  = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG

Source: NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi

To convert a nucleotide position within a gene to an amino acid position within a gene (both indexed starting at 1) use the following equation: AA = floor[ (NT-1) / 3 ] + 1.

Stop codon nomenclature

TAG

amber

TAA

ochre

TGA

opal or umber