Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,162,790 IS150 (–) +3 bp 41.7% coding (601‑603/1071 nt) plsX → fatty acid/phospholipid synthesis protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)45 (0.480) 28/44 NT 38.5% noncoding (1/1443 nt) IS150 repeat region
?REL606 1162790 = 62 (0.760)coding (601/1071 nt) plsX fatty acid/phospholipid synthesis protein
* ? REL606 = 666130NA (NA)46 (0.450) 24/48 NT 38.2% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 1162792 65 (0.720)coding (603/1071 nt) plsX fatty acid/phospholipid synthesis protein

Only 100 of 252 total aligned reads displayed.

TAAAGGGTCTCGACAGTATTCGGGATGCCTCAGCGGTGCTTAAAACAATCCCTTCTATCAATTATATCG  >  REL606/1162758‑1162826
                                  |                                  
tAAAGGGTCTCGACAGTATTCGGGATGCCTCTGCg                                    >  1:14187174/1‑35 (MQ=255)
tAAAGGGTCTCGACAGTATTCGGGATGCCTCAGCg                                    >  1:12987882/1‑35 (MQ=255)
tAAAGGGTCTCGACAGTATTCGGGATGCCTCAGCg                                    >  1:7533252/1‑35 (MQ=255)
 aaaGGGTCTCGACAGTATTCGGTATGCCTCAGCGt                                   <  1:955918‑M2/35‑2 (MQ=255)
 aaaGGGTCTCGACAGTATTCGGGATGCCTCAGCgg                                   >  1:4348401/1‑35 (MQ=255)
  aaGGGTCTCGACAGTATTCGGGATGCCTCAGCGtg                                  <  1:7881293‑M2/35‑3 (MQ=255)
   aGGGTCTCGACAGTATTCGGGATGCCTCAGCGtgt                                 >  1:5403620‑M2/1‑32 (MQ=255)
    gggTCTCGACAGTATTCGGGATGCCTCAGCGtgta                                <  1:6218190‑M2/35‑5 (MQ=255)
    gggTCTCGACAGTATTCGGGATGCCTCAGCGGTGc                                >  1:2072388/1‑35 (MQ=255)
    gggTCTCGACAGTATTCGGGATGCCTCAGCGGTGc                                <  1:3516648/35‑1 (MQ=255)
    gggTCTCGACAGTATTCGGGATGCCTCAGCGGTGc                                <  1:9895465/35‑1 (MQ=255)
    gggTCTCGACAGTATTCGGGATGCCTCAGCGGGGc                                >  1:5929017/1‑35 (MQ=255)
    catcgtccaacaaaatgggtgcagtacaGCGGTGc                                <  1:1360710‑M2/7‑1 (MQ=255)
     ggTCTCGACAGTATTCGGGATGCCTCAGCGtgtac                               <  1:13885845‑M2/35‑6 (MQ=255)
     ggTCTCGACAGTATTCGGGATGCCTCAGCGtgtac                               <  1:13339260‑M2/35‑6 (MQ=255)
     atcgtccaacaaaatgggtgcagtacaGCGGTGCt                               <  1:12065471‑M2/8‑1 (MQ=255)
     atcgtcaaacaaaatgggtgcagtacaGCGGTGCt                               <  1:16591455‑M2/8‑1 (MQ=255)
      gTCTCGACAGTATTCGGGATGCCTCAGCGtgtact                              >  1:1920385‑M2/1‑29 (MQ=255)
      gTCTCGACAGTATTCGGGATGCCTCAGCGtgtact                              >  1:10661108‑M2/1‑29 (MQ=255)
      gTCTCGACAGTATTCGGGATGCCTCAGCGtgtact                              >  1:4562851‑M2/1‑29 (MQ=255)
       tctcGACAGTATTCGGGATGCCTCAGCGtgtactg                             >  1:12752988‑M2/1‑28 (MQ=255)
       tctcGACAGTATTCGGGATGCCTCAGCGGTGCTTa                             >  1:378655/1‑35 (MQ=255)
          cGACAGTATTCGGGATGCCTCAGCGGTGCTTaaaa                          <  1:9258249/35‑1 (MQ=255)
          cGACAGTATTCGGGATGCCTCAGCGGTGCTTaaaa                          <  1:17192598/35‑1 (MQ=255)
           gACAGTATTAGGGATGCCTCAGCGtgtactgaccc                         >  1:634360‑M2/1‑24 (MQ=255)
           caacaaaatgggtgcagtacaGCTGTGCTTAAAAc                         >  1:3847802‑M2/22‑35 (MQ=255)
            aacaaaatgggtgcagtacaGCGGTGCTTAAAACa                        <  1:12486947‑M2/15‑1 (MQ=255)
            aacaaaatgggtgcagtacaGCGGTGCTTAAAACa                        <  1:15827723‑M2/15‑1 (MQ=255)
             cAGTATTCGGGATGCCTCAGCGGTGCTTAAAACaa                       >  1:19664701/1‑35 (MQ=255)
             cAGTATTCGGGATGCCTCAGCGGTGCTTAAAACaa                       <  1:15001855/35‑1 (MQ=255)
              caaaatgggtgcagtacaGCGGTGCTTAAAACAAt                      <  1:10089693‑M2/17‑1 (MQ=255)
              aGTATTCGGGATGCCTCAGCGtgtactgaccccaa                      >  1:15497572‑M2/1‑21 (MQ=255)
              aGTATTCGGGATGCCTCAGCGGTGCTTAAAACAAt                      <  1:1892092/35‑1 (MQ=255)
               gTATTCGGGATGCCTCAGCGtgtactgaccccaaa                     <  1:5080833‑M2/35‑16 (MQ=255)
                tATTCGGGATGCCTCAGCGtgtactgaccccaaaa                    <  1:4222608‑M2/35‑17 (MQ=255)
                tATTCGGGATGCCTCAGCGGTGCTTAAAACAATcc                    <  1:2031525/35‑1 (MQ=255)
                tATTCGGGATGCCTCAGCGGTGCTTAAAACAATcc                    >  1:7691003/1‑35 (MQ=255)
                tATTCGGGATGCCTCAGCGGTGCTTAAAACAATcc                    >  1:18153796/1‑35 (MQ=255)
                tATTCGGGATGCCTCAGCGGTGCTTAAAACAATcc                    <  1:12229750/35‑1 (MQ=255)
                 aatgggtgcagtacaGCGGTGCTTAAAACAATccc                   <  1:2281084‑M2/20‑1 (MQ=255)
                 aatgggtgcagtacaGCGGTGCTTAAAACAATccc                   <  1:19577791‑M2/20‑1 (MQ=255)
                 aTTCTGGATGCCTCAGCGtgtactgaccccaaaaa                   <  1:13105103‑M2/35‑18 (MQ=255)
                 aTTCGGGATGCCTCAGCGtgtactgaccccaaaaa                   <  1:16063033‑M2/35‑18 (MQ=255)
                 aTTCGGGATGCCTCAGCGtgtactgacccaaaaaa                   >  1:10331495‑M2/1‑18 (MQ=255)
                   tCGGGATGGCTCAGCGGTGCTTAAAACAATCCCtt                 <  1:19972038/35‑1 (MQ=255)
                    gggtgcattacaGCGGTGCTTAAAACAATCCCTTc                >  1:12273099‑M2/13‑35 (MQ=255)
                    gggtgcagtacaGCGGTGCTTAAAACAATCCCTTc                <  1:3315080‑M2/23‑1 (MQ=255)
                    gggtgcagtacaGCGGTGCTTAAAACAATCCCTTc                >  1:16431358‑M2/13‑35 (MQ=255)
                    cGGGATGCCTCAGCGtgtactgaccccaaaaagtt                <  1:17847396‑M2/35‑21 (MQ=255)
                    cGGGATGCCTCAGCGGTGCTTAAAACAATCCCTTc                <  1:6783209/35‑1 (MQ=255)
                    cGGGATGCCTCAGCGGTGCTTAAAACAATCCCTTc                <  1:6062243/35‑1 (MQ=255)
                     ggtgcagtacaGCGGTGCTTAAAACAATCCCTTCt               >  1:1384093‑M2/12‑35 (MQ=255)
                     ggtgcagtacaGCGGTGCTTAAAACAATCCCTTCt               <  1:2661994‑M2/24‑1 (MQ=255)
                     gggATGCCTCAGCGtgtactgaccccaaaaagttg               <  1:3174424‑M2/35‑22 (MQ=255)
                     gggATGCCTCAGCGGTGCTTAAAACAATCCCTTCt               <  1:11827347/35‑1 (MQ=255)
                     gggATGCCTCAGCGGTGCTTAAAACAATCCATTCt               <  1:14125729/35‑1 (MQ=255)
                      gtgcagtacaGCGGTGCTTAAAACAATCCCTTCTa              <  1:7398383‑M2/25‑1 (MQ=255)
                      gtgcagtacaGCGGTGCTTAAAACAATCCCTTCTa              >  1:2154962‑M2/11‑35 (MQ=255)
                      ggATGCCTCAGCGtgtactgaccccaaaaagttgg              >  1:12408084‑M2/1‑13 (MQ=255)
                      ggATGCCTCAGCGtgtactgaccccaaaaagttgg              >  1:11114101‑M2/1‑13 (MQ=255)
                      ggATGCCTCAGCGGTGCTTAAAACAATCCCTTCTa              <  1:10778430/35‑1 (MQ=255)
                      ggATGCCTCAGCGGTGCTTAAAACAATCCCTTCTa              <  1:2531846/35‑1 (MQ=255)
                       tgcagtacaGCGGTGCTTAAAACAATCCCTTCTAt             <  1:15206981‑M2/26‑1 (MQ=255)
                       gATGCCTCAGCGtgtactgaccccaaaaagttgga             >  1:15752045‑M2/1‑12 (MQ=255)
                       gATGCCTCAGCGGTGCTTAAAACAATCCCTTCTAt             <  1:18663522/35‑1 (MQ=255)
                       gATGCCTCAGCGGTGCTTAAAACAATCCCTTATAt             <  1:7163582/35‑1 (MQ=255)
                        aTGCCTCAGCGtgtactgaccccaaaaagttggac            >  1:3556723‑M2/1‑11 (MQ=255)
                        aTGCCTCAGCGGTGCTTAAAACAATCCCTTCTATc            <  1:6846636/35‑1 (MQ=255)
                        aTGCCTCAGCGGTGCTTAAAACAATCCCTTCTATc            >  1:2726898/1‑35 (MQ=255)
                         tGCCTCAGCGGTGCTTAAAACAATCCCTTCTATCa           <  1:18733736/35‑1 (MQ=255)
                         tGCCTCAGCGGTGCTTAAAACAATCCCTTCTATCa           <  1:10826549/35‑1 (MQ=255)
                         cagtacaGCGGTGCTTAAAACAATCCCTTCTATCa           <  1:17535021‑M2/28‑1 (MQ=255)
                          gCCTCAGCGtgtactgaccccaaaaagttggacag          <  1:18597624‑M2/35‑27 (MQ=255)
                          gCATCAGCGtgtactgaccccaaaaagttggacag          >  1:11068900‑M2/1‑9 (MQ=255)
                          agtacaGCGGTGCTTAAAACAATCCCTTCTATCaa          <  1:873773‑M2/29‑1 (MQ=255)
                           gtacaGCGGTGCTTAAAACAATCCCTTCTATCAAt         >  1:18476720‑M2/6‑35 (MQ=255)
                           ccTCAGCGtgtactgaccccaaaaagttggacagt         <  1:284192‑M2/35‑28 (MQ=255)
                             tCAGCGtgtactgaccccaaaaagttggacagtta       <  1:7202552‑M2/35‑30 (MQ=255)
                             tCAGCGtgtactgaccccaaaaagttggacagtta       >  1:6923918‑M2/1‑6 (MQ=255)
                             tCAGCGGTGCTTAAAACAATCCCTTCTATCAATta       >  1:16239942/1‑35 (MQ=255)
                             tCAGCGGTGCTTAAAACAATCCCTTCTATCAATta       <  1:11429631/35‑1 (MQ=255)
                              caGCGGTGCTTAAAACAATCCCTTCTATCAATtat      <  1:14214597‑M2/33‑1 (MQ=255)
                              caGCGGTGCTTAAAACAATCCCTTCTATCAATtat      <  1:17260845‑M2/33‑1 (MQ=255)
                              caGCGGTGCTTAAAACAATCCCTTCTATCAATtat      >  1:18265377‑M2/3‑35 (MQ=255)
                              caGCGGTGCTTAAAACAATCCCTTCTATCAATtat      <  1:5189335‑M2/33‑1 (MQ=255)
                              cAGCGtgtactgaccccaaaaagttggacagttaa      <  1:11326424‑M2/35‑31 (MQ=255)
                              cAGCGtgtactgaccccaaaaagttggacagttaa      <  1:15271786‑M2/35‑31 (MQ=255)
                               aGCGtgtactgacccaaaaaagttggacagttaaa     >  1:80979‑M2/1‑4 (MQ=255)
                               aGCGGTGCTTAAAACAATCCCTTCTATCAATtata     >  1:20246806‑M2/2‑35 (MQ=255)
                                 cGGTGCTTAAAACAATCCCTTCTATCAATTATATc   >  1:2789328/1‑35 (MQ=255)
                                 cGGTGCTTAAAACAATCCCTTCTATCAATTATATc   <  1:11623916/35‑1 (MQ=255)
                                 cGGTGCTTAAAACAATCCCTTCTATCAATTATATc   <  1:17945867/35‑1 (MQ=255)
                                 cGGTGCTTAAAACAATCCCTTCTATCAATTATATc   <  1:5672706/35‑1 (MQ=255)
                                 cGGTGCTTAAAACAATCCCTTCTATCAATTATATc   <  1:5301036/35‑1 (MQ=255)
                                 cGGTGCTTAAAACAATCCCTTCTATCAATTATATc   >  1:8299059/1‑35 (MQ=255)
                                 cGGTGCTTAAAACAATCCCTTCTATCAATTATATc   >  1:10538626/1‑35 (MQ=255)
                                  ggTGCTTAAAACAATCCCTTCTATCAATTATATCg  >  1:20537731/1‑35 (MQ=255)
                                  ggTGCTTAAAACAATCCCTTCTATCAATTATATCg  <  1:1464980/35‑1 (MQ=255)
                                  ggTGCTTAAAACAATCCCTTCTATCAATTATATCg  >  1:7970718/1‑35 (MQ=255)
                                  ggTGCTTAAAACAATCCCTTCTATCAATTATATCg  <  1:15361737/35‑1 (MQ=255)
                                  |                                  
TAAAGGGTCTCGACAGTATTCGGGATGCCTCAGCGGTGCTTAAAACAATCCCTTCTATCAATTATATCG  >  REL606/1162758‑1162826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.