Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 473,901 | +C | 46.7% | coding (1405/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 473,901 | 1 | .→C | 46.7% | 0.0 ‑2.4 ‑0.7 | 169 | coding (1405/1677 nt) | ybaL | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
Reads supporting (aligned to +/- strand): new base (37/41): ref base (55/35): total (92/77) | ||||||||||
Fisher's exact test strand distribution p-value = 8.83e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.01e-01 |
Only 100 of 194 total aligned reads displayed.
TCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCATTGCCCAATACTGCGCGGACCCCGCGCTCT > REL606/473867‑473935 | tCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGC > 1:16964333‑M1/1‑35 (MQ=255) tCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGC < 1:15132258‑M1/35‑1 (MQ=255) tCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGC > 1:3246228‑M1/1‑35 (MQ=255) tCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGC < 1:6260556‑M1/35‑1 (MQ=255) ccAGATGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑C < 1:10746977‑M1/35‑1 (MQ=255) ccAGATGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑C > 1:5626243‑M1/1‑35 (MQ=255) ccAGATGCGCCAGTTGCATAATTTCTTCGTTAGC‑‑C < 1:7530476‑M1/35‑1 (MQ=255) cAGATGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CG > 1:14350651‑M1/1‑35 (MQ=255) cAGATGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CG < 1:5555546‑M1/35‑1 (MQ=255) cAGATGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CG > 1:2265118‑M1/1‑35 (MQ=255) cAGATGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CG > 1:12862137‑M1/1‑35 (MQ=255) aaaTGCGCCAGTTTCATAATTTCTTCTTTcgc‑‑cgc < 1:8216419/33‑1 (MQ=25) aGATGCGCCAGTTTCATAATTTCTTCGTTCGC‑‑CGC > 1:8126251‑M1/1‑35 (MQ=255) aTGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgc > 1:16704037‑M1/1‑33 (MQ=255) aTGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgc > 1:4184225‑M1/1‑33 (MQ=255) aTGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgc > 1:20561706‑M1/1‑33 (MQ=255) aTGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgc > 1:11376272‑M1/1‑33 (MQ=255) aTGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgc > 1:10245524‑M1/1‑33 (MQ=255) aTGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCAt > 1:4457490/1‑35 (MQ=255) gcgcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcat > 1:16187358‑M1/1‑31 (MQ=255) gcgcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcat < 1:2536497‑M1/35‑5 (MQ=255) gcgcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcat > 1:5908500‑M1/1‑31 (MQ=255) gcgcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcat < 1:13948649‑M1/35‑5 (MQ=255) cgcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcatt < 1:10150244‑M1/35‑6 (MQ=255) cgcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcatt > 1:1680785‑M1/1‑30 (MQ=255) cgcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcatt > 1:11295395‑M1/1‑30 (MQ=255) gcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattg > 1:12601666‑M1/1‑29 (MQ=255) ccAGTTTCATAATTTCTTCGTTCGC‑‑CGCgcattgc > 1:18923369‑M1/1‑28 (MQ=255) ccAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgc < 1:6301406‑M1/35‑8 (MQ=255) ccAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgc > 1:11666950‑M1/1‑28 (MQ=255) ccAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgc > 1:11870647‑M1/1‑28 (MQ=255) cAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgcc > 1:16739866‑M1/1‑27 (MQ=255) cAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgcc > 1:20040315‑M1/1‑27 (MQ=255) cAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgcc < 1:7805302‑M1/35‑9 (MQ=255) cAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgcc < 1:948228‑M1/35‑9 (MQ=255) cAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgcc > 1:13491868‑M1/1‑27 (MQ=255) cAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgcc < 1:13012124‑M1/35‑9 (MQ=255) aGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgccc < 1:16044783‑M1/35‑10 (MQ=255) aGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgccc < 1:3328955‑M1/35‑10 (MQ=255) aGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgccc < 1:17589770‑M1/35‑10 (MQ=255) aGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgccc > 1:20097143‑M1/1‑26 (MQ=255) aGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgccc > 1:11044705‑M1/1‑26 (MQ=255) aGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgccc > 1:6800492‑M1/1‑26 (MQ=255) aGTTGCATAATTTCTTCGTTCGC‑‑CGCATTGCCCaa > 1:3985835/1‑35 (MQ=255) gTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgccca > 1:3564444‑M1/1‑25 (MQ=255) gTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgccca > 1:5328282‑M1/1‑25 (MQ=255) gTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgccca < 1:7676113‑M1/35‑11 (MQ=255) ttGCATAATTTCTTCGTTCGC‑‑CGCgcattgcccaa > 1:611723‑M1/1‑24 (MQ=255) ttGCATAATTTCTTCGTTCGC‑‑CGCgcattgcccaa > 1:5813837‑M1/1‑24 (MQ=255) ttGCATAATTTCTTCGTTCGC‑‑CGCgcattgcccaa > 1:15335595‑M1/1‑24 (MQ=255) tGCATAATTTCTTCGTTCGCCGCGCATTGCCCAAt < 1:1248537/35‑1 (MQ=21) tGCATAATTTCTTCGTTCGCCGCGCATTGCCCAAt > 1:11383328/1‑35 (MQ=21) tGCATAATTTCTTCGTTCGCCGCGCATTGCCCAAt > 1:17051941/1‑35 (MQ=21) tGCATAATTTCTTCGTTCGCCGCGCATTGCCCAAt > 1:4586943/1‑35 (MQ=21) tGCATAATTTCTTCGTTCGCCGCGCATTGCCCAAt < 1:640921/35‑1 (MQ=21) gCATAATTTCTTCGTTCGCCGCGCATTGCCCAATa < 1:3911167/35‑1 (MQ=21) gCATAATTTCTTCGTTCGCCGCGCATTGCCCAATa > 1:8660606/1‑35 (MQ=21) gCATAATTTCTTCGTTCGCCGCGCATTGCCCAATa > 1:8407940/1‑35 (MQ=21) cATAATTTCTTCTTTCGCCGCGCATTGCCCAATAc < 1:692669/35‑1 (MQ=12) cATAATTTCTTCGTTCGCCGCGCATTGCCCAATAc > 1:2642220/1‑35 (MQ=21) cATAATTTCTTCGTTCGCCGCGCATTGCCCAATAc > 1:6528868/1‑35 (MQ=21) cATAATTTCTTCGTTCGCCGCGCATTGCACAATan < 1:20319554/35‑2 (MQ=16) aTAATTTCTTCGTTCGCCGCGCATTGCCCAATACt < 1:19976529/35‑1 (MQ=21) tAATTTCTTCGTTCGG‑‑CGCATTGCCCAATACTgcg > 1:9672242/1‑35 (MQ=255) tAATTTCTTCGTTCGCCGCGCATTGCCCAATACTg > 1:5683721/1‑35 (MQ=21) tAATTTCTTCGTTCGCCGCGCATTGCCCAATACTg < 1:19594005/35‑1 (MQ=21) aaTTTCTTCGTTCGCCGCGCATTGCCCAATACTgc > 1:9465597/1‑35 (MQ=21) aaTTTCTTCGTTCGCCGCGCATTGCCCAATACTgc > 1:285157/1‑35 (MQ=21) aaTTTCTTCGTTCGCCGCGCATTGCCCAATACTgc < 1:2285936/35‑1 (MQ=21) aaTTTCTTCGTTCGCCGCGCATTGCCCAATACTgc < 1:13881239/35‑1 (MQ=21) aaTTTCTTCGTTCGCCGCGCATTGCCCAATACTgc > 1:7297378/1‑35 (MQ=21) aaTTTCTTCGTTCGCCGCGCATTGCCCAATACTgc > 1:19452066/1‑35 (MQ=21) aaTTTCTTCGTTCGCCGCGCATTGCCAAATACTgc < 1:20247175/35‑1 (MQ=12) aTTTCTTCGTTCGCCGCGCATTGCCCAATACTgcg < 1:10293009/35‑1 (MQ=21) aTTTCTTCGTTCGCCGCGCATTGCCCAATACTgcg > 1:9128955/1‑35 (MQ=21) aTTTCTTCGTTCGCCGCGCATTGCCCAATACTgcg > 1:15608167/1‑35 (MQ=21) aTTTCTTCGTTCGCCGCGCATTGCCCAATACTgcg > 1:14903721/1‑35 (MQ=21) aTTTCTTCGTTCGCCGCGCATTGCCCAATACTgcg > 1:17935425/1‑35 (MQ=21) tttCTTCGTTCGCCGCGCATTGCCCAATACTgcgc < 1:4191422/35‑1 (MQ=21) tttCTTCGTTCGCCGCGCATTGCCCAATACTgcgc > 1:17249795/1‑35 (MQ=21) ttcttcGTTCGCCGCGCATTGCCCAATACTgcgcn < 1:15873307/35‑2 (MQ=21) ttcttcGTTCGCCGCGCATTGCCCAATACTGcgcg < 1:8195988/35‑1 (MQ=21) tcttcGTTCGCCGCGCATTGCCCAATACTGCGCgg < 1:13726239/35‑1 (MQ=21) tcttcGTTCGCCGCGCATTGCCCAATACTGCGCgg < 1:16556428/35‑1 (MQ=21) cttcGTTCGCCGCGCATTGCCCAATACTGCGCGGa < 1:6219449/35‑1 (MQ=21) cttcGTTCGCCGCGCATTGCCCAATACTGCGCGGa < 1:14071038/35‑1 (MQ=21) cttcGTTCGCCGCGCATTGCCCAATACTGCGCGGa < 1:18183627/35‑1 (MQ=21) cttcGTTCGCCGCGCATTGCCCAATACTGCGCGGa > 1:19782683/1‑35 (MQ=21) ttcgttcgCCGCGCATTGCCCAATACTGCGCGGAc > 1:9805429/1‑35 (MQ=21) ttcgttcgCCGCGCATTGCCCAATACTGCGCGGAc > 1:5433473/1‑35 (MQ=21) ttcgttcgCCGCGCATTGCCCAATACTGCGCGGAc < 1:10028700/35‑1 (MQ=21) ttcgC‑‑CGCATTGCCCAATACTGCGCGGACCCcgcg < 1:5068881/35‑1 (MQ=255) ttcgC‑‑CGCATTGCCCAATACTGCGCGGACCCcgcg > 1:16934997/1‑35 (MQ=255) cgc‑‑cgcgcattgccacccgtctgctgcgtcgagtg < 1:17749964‑M1/35‑30 (MQ=255) cgc‑‑cgcgcattgccaaccgtctgctgcgtcgagtg > 1:2036906‑M1/1‑6 (MQ=255) cgc‑‑cgcgcattgccaaccgtctgctgcgtcgagtg > 1:19216754‑M1/1‑6 (MQ=255) cgc‑‑cgcgcattgccaaccgtctgctgcgtcgagtg > 1:10176853‑M1/1‑6 (MQ=255) gc‑‑cgcgcattgccaaccgtctgctgcgtcgagtgc < 1:16615536‑M1/35‑31 (MQ=255) gc‑‑cgcgcattgccaaccgtctgctgcgtcgagtgc > 1:1353857‑M1/1‑5 (MQ=255) c‑‑cgcgcattgccaaccgtctgctgcgtcgagtgcg < 1:16092172‑M1/35‑32 (MQ=255) | TCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCATTGCCCAATACTGCGCGGACCCCGCGCTCT > REL606/473867‑473935 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |