New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 547699NA (NA)48 (0.470) 30/48 NT NA noncoding (1/768 nt) IS1 repeat region
?REL606 557127 = NA (NA)coding (70/282 nt) ECB_00514 conserved hypothetical protein

Only 100 of 103 total aligned reads displayed.

TCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/547666‑547699
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGATGACGAGTCGATGCAGGATGATATTCTTA  >  REL606/557127‑557160
                                                                    
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:13870311/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:8160549/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   >  1:15372874/1‑35
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:7130545/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:17485078/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:18171969/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:18616346/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   >  1:6196366/1‑35
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:19937834/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:19960008/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:472666/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   >  1:2086650/1‑35
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   >  1:2244589/1‑35
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   >  1:2489203/1‑35
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   >  1:4025080/1‑35
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:3116565/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:3522752/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:3620985/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:3826079/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:10020616/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   >  1:11293974/1‑35
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:8232465/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   <  1:8911913/35‑1
TCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                   >  1:8774735/1‑35
 CATACACTAAATCAGTAAGTTGGCAGCATCACCTc                                  >  1:15959100/1‑34
 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA                                  >  1:3656560/1‑35
 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA                                  >  1:10171067/1‑35
 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA                                  <  1:10907211/35‑1
 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA                                  >  1:210910/1‑35
 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA                                  >  1:20415378/1‑35
 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA                                  >  1:4897090/1‑35
 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA                                  <  1:12428626/35‑1
 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA                                  >  1:18471981/1‑35
 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA                                  <  1:12668900/35‑1
 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA                                  >  1:13807996/1‑35
 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA                                  >  1:7864323/1‑35
 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA                                  <  1:8140339/35‑1
  ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT                                 <  1:13836616/35‑1
  ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT                                 >  1:13359426/1‑35
  ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT                                 <  1:2812870/35‑1
  ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT                                 >  1:13910868/1‑35
  ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT                                 <  1:18595142/35‑1
  ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT                                 >  1:8232461/1‑35
  ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT                                 <  1:222000/35‑1
    ACACTAAATCAGTAAGTTGGCAGCATCACCTATGA                               >  1:13236140/1‑35
    ACACTAAATCAGTAAGTTGGCAGCATCACCTATGA                               >  1:6956973/1‑35
     CACTAAATCAGTAAGTTGGCAGCATCACCTATGAT                              >  1:11740006/1‑35
      ACTAAATCAGTAAGTTGGCAGCATCACCTATGATG                             >  1:8142194/1‑35
      ACTAAATCAGTAAGTTGGCAGCATCACCTATGATG                             <  1:12742790/35‑1
       CTAAATCAGTAAGTTGGCAGCATCACCTATGATGA                            <  1:5729580/35‑1
       CTAAATCAGTAAGTTGGCAGCATCACCTATGATGA                            >  1:15823170/1‑35
        TAAATCAGTAAGTTGGCAGCATCACCTATGATGAC                           <  1:8868477/35‑1
        TAAATCAGTAAGTTGGCAGCATCACCTATGATGAC                           >  1:3228227/1‑35
         AAATCAGTAAGTTGGCAGCATCACCTATGATGACG                          >  1:14088033/1‑35
          AATCAGTAAGTTGGCAGCATCACCTATGATGACGA                         <  1:491043/35‑1
          AATCAGTAAGTTGGCAGCATCACCTATGATGACGA                         >  1:1007447/1‑35
           ATCAGTAAGTTGGCAGCATCACCTATGATGACGAG                        >  1:10343352/1‑35
           ATCAGTAAGTTGGCAGCATCACCTATGATGACGAG                        >  1:8473131/1‑35
            TCAGTAAGTTGGCAGCATCACCTATGATGACGAGT                       >  1:3348417/1‑35
            TCAGTAAGTTGGCAGCATCACCTATGATGACGAGT                       <  1:6237446/35‑1
            TCAGTAAGTTGGCAGCATCACCTATGATGACGAGT                       >  1:19907161/1‑35
              AGTAAGTTGGCAGCATCACCTATGATGACGAGTCG                     >  1:7828037/1‑35
              AGTAAGTTGGCAGCATCACCTATGATGACGAGTCG                     <  1:6402017/35‑1
              AGTAAGTTGGCAGCATCACCTATGATGACGAGTCG                     <  1:9069385/35‑1
               gttAGTTGGCAGCATCACCTATGATGACGAGTCGA                    <  1:2589082/32‑1
               GTAAGTTGGCAGCATCACCTATGATGACGAGTCGA                    <  1:9578251/35‑1
               GTAAGTTGGCAGCATCACCTATGATGACGAGTCGA                    >  1:12510473/1‑35
               GTAAGTTGGCAGCATCACCTATGATGACGAGTCGA                    <  1:18010151/35‑1
                TAAGTTGGCAGCATCCCCTATGATGACGAGTCGAT                   <  1:2747431/35‑1
                TAAGTTGGCAGCATCACCTATGATGACGAGTCGAT                   >  1:7346390/1‑35
                TAAGTTGGCAGCATCACCTATGATGACGAGTCGAT                   >  1:18667199/1‑35
                 AAGTTGGCAGCATCACCTATGATGACGAGTCGATG                  >  1:118344/1‑35
                 AAGTTGGCAGCATCACCTATGATGACGAGTCGATG                  >  1:15304446/1‑35
                    tgGGCAGCATCACCTATGATGACGAGTCGATGCAG               <  1:11970944/33‑1
                    TTGGCAGCATCACCTATGATGACGAGTCGATGCAG               >  1:10207360/1‑35
                    TTGGCAGCATCACCTATGATGACGAGTCGATGCAG               <  1:8208325/35‑1
                    TTGGCAGCATCACCTATGATGACGAGTCGATGCAG               <  1:3651776/35‑1
                    TTGGCAGCATCACCTATGATGACGAGTCGATGCAG               <  1:19636175/35‑1
                     TGGCAGCATCACCTATGATGACGAGTCGATGGAGG              >  1:858072/1‑35
                     TGGCAGCATCACCTATGATGACGAGTCGATGCAGG              >  1:19793091/1‑35
                     TGGCAGCATCACCTATGATGACGAGTCGATGCAGG              <  1:1326235/35‑1
                     TGGCAGCATCACCTATGATGACGAGTCGATGCAGG              >  1:14814927/1‑35
                     TGGCAGCATCACCTATGATGACGAGTCGATGCAGG              >  1:15279283/1‑35
                       GCAGCATCACCTATGATGACGAGTCGATGCAGGAT            >  1:20568885/1‑35
                         AGCATCACCTATGATGACGAGTCGATGCAGGATGA          >  1:19573673/1‑35
                         AGCATCACCTATGATGACGAGTCGATGCAGGATGA          >  1:16764900/1‑35
                         AGCATCACCTATGATGACGAGTCGATGCAGGATGA          >  1:15442450/1‑35
                         AGCATCACCTATGATGACGAGTCGATGCAGGATGA          <  1:7448419/35‑1
                          GCATCACCTATGATGACGAGTCGATGCAGGATGAT         >  1:17308781/1‑35
                          GCATCACCTATGATGACGAGTCGATGCAGGATGAT         <  1:16391580/35‑1
                           CATCACCTATGATGACGAGTCGATGCAGGATGATA        <  1:7205375/35‑1
                             tccCCTATGATGACGAGTCGATGCAGGATGATATT      <  1:5023333/32‑1
                             TCACCTATGATGACGAGTCGATGCAGGATGATATT      <  1:8514748/35‑1
                              CACCTATGATGACGAGTCGATGCAGGATGATATTC     <  1:12318758/35‑1
                               ACCTATGATGACGAGTCGATGCAGGATGATATTCT    >  1:691748/1‑35
                               ACCTATGATGACGAGTCGATGCAGGATGATATTCT    <  1:19969955/35‑1
                                CCTATGATGACGAGTCGATGCAGGATGATATTCTT   <  1:5449585/35‑1
                                CCTATGATGACGAGTCGATGCAGGATGATATTCTT   <  1:14080060/35‑1
                                CCTATGATGACGAGTCGATGCAGGATGATATTCTT   <  1:13229875/35‑1
                                 CTATGATGACGAGTCGATGCAGGATGATATTCTTA  >  1:6505388/1‑35
                                                                    
TCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/547666‑547699
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGATGACGAGTCGATGCAGGATGATATTCTTA  >  REL606/557127‑557160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.