New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1947885 =81 (0.790)20 (0.200) 9/46 NT 16.6% coding (250/861 nt) cheR chemotaxis regulator, protein‑glutamate methyltransferase
?REL606 = 3428485 123 (1.250)coding (671/1338 nt) yhfM predicted fructoselysine transporter

Only 100 of 209 total aligned reads displayed.

TCTATCTGTTATATGACCGGCGAAATTAAAAACCCCGGAAAAACCATGCCACGAGCGCTGATTGGTTCC  >  REL606/3428451‑3428519
                                  |                                  
tctATCTGTTATATGACCGGCGAAATTAAAAAccc                                    <  1:3544685/35‑1 (MQ=255)
 cTATCTGTTATATGACCGGCGAAATTAAAAACCCc                                   >  1:14709684‑M2/1‑34 (MQ=255)
 cTATCTGTTATATGACCGGCGAAATTAAAAACCCc                                   >  1:16928432‑M2/1‑34 (MQ=255)
 cTATCTGTTATATGACCGGCGAAATTAAAAACCCc                                   >  1:8780262‑M2/1‑34 (MQ=255)
  tATCTGTTATATGACCGGCGAAATTAAAAACCCCg                                  >  1:5288128/1‑35 (MQ=255)
  tATCTGTTATATGACCGGCGAAATTAAAAACCCCg                                  >  1:9384149/1‑35 (MQ=255)
  tATCTGTTATATGACCGGCGAAATTAAAAACCCCg                                  <  1:10601597/35‑1 (MQ=255)
    tCTGTTATATGACCGGCGAAATTAAAAACCCCGGa                                >  1:20149561/1‑35 (MQ=255)
    tCTGTTATATGACCGGCGAAATTAAAAACCCCGGa                                >  1:13272164/1‑35 (MQ=255)
    tCTGTTATATGACCGGCGAAATTAAAAACCCCGGa                                <  1:4893278/35‑1 (MQ=255)
     cTGTTATATGACCGGCGAAATTAAAAACCCCGGaa                               >  1:11671835/1‑35 (MQ=255)
     cTGTTATATGACCGGCGAAATTAAAAACCCCGGaa                               <  1:12106108/35‑1 (MQ=255)
      tGTTATATGACCGGCGAAATTAAAAACCCCGGaaa                              >  1:16663424/1‑35 (MQ=255)
      tGTTATATGACCGGCGAAATTAAAAACCCCGGaaa                              >  1:3004823/1‑35 (MQ=255)
      tGTTATATGACCGGCGAAATTAAAAACCCCGGaaa                              >  1:514605/1‑35 (MQ=255)
       gTTATATGACCGGCGAAATTAAAAACCCCGGaaaa                             <  1:2021408/35‑1 (MQ=255)
       gTTATATGACCGGCGAAATTAAAAACCCCGGaaaa                             >  1:14367354/1‑35 (MQ=255)
       gTTATATGACCGGCGAAATTAAAAACCCCGGaaaa                             >  1:6348867/1‑35 (MQ=255)
         tataTGACCGGCGAAATTAAAAACCCCGGAAAAAc                           >  1:1725825/1‑35 (MQ=255)
          atatGACCGGCGAAATTAAAAACCCCGGAAAAAcc                          <  1:8234864/35‑1 (MQ=255)
          atatGACCGGCGAAATTAAAAACCCCGGAAAAAcc                          >  1:8815582/1‑35 (MQ=255)
          atatGACCGGCGAAATTAAAAACCCCGGAAAAAcc                          <  1:5988754/35‑1 (MQ=255)
          atatGACCGGCGAAATTAAAAACCCCGGAAAAAcc                          <  1:10029579/35‑1 (MQ=255)
          atatGACCGGCGAAATTAAAAACCCCGGAAAAAcc                          >  1:14041217/1‑35 (MQ=255)
           tatGACCGGCGAAATTAAAAACCCCGGAAAAACCa                         <  1:20597839/35‑1 (MQ=255)
           tatGACCGGCGAAATTAAAAACCCCGGAAAAACCa                         >  1:4653578/1‑35 (MQ=255)
           tatGACCGGCGAAATTAAAAACCCCGGAAAAACCa                         >  1:20460006/1‑35 (MQ=255)
            atGACCGGCGAAATTAAAAACCCCGTAAAAACCAt                        >  1:16380167/1‑35 (MQ=255)
            atGACCGGCGAAATTAAAAACCCCGGAAAAACCAt                        >  1:13628142/1‑35 (MQ=255)
            atGACCGGCGAAATTAAAAACCCCGGAAAAACCAt                        <  1:18466910/35‑1 (MQ=255)
             tGACCGGCGAAATTAAAAACCCCGGAAAAACCATg                       <  1:5376386/35‑1 (MQ=255)
             tGACCGGCGAAATTAAAAACCCCGGAAAAACCATg                       >  1:18054606/1‑35 (MQ=255)
             tGACCGGCGAAATTAAAAACCCCGGAAAAACCATg                       >  1:6387857/1‑35 (MQ=255)
             tGACCGGCGAAATTAAAAACCCCGGAAAAACCATg                       >  1:9472900/1‑35 (MQ=255)
             tGACAGGCGAAATTAAAAACCCCGGAAAAACCATg                       <  1:14378145/35‑1 (MQ=255)
               aCCGGCGAAATTAAAAACCCCGGAAAAACCATGcc                     >  1:2185425/1‑35 (MQ=255)
                ccGGCGAAATTAAAAACCCCGGAAAAACCATGCCa                    <  1:4320105/35‑1 (MQ=255)
                ccGGCGAAATTAAAAACCCCGGAAAAACCATGCCa                    <  1:17206268/35‑1 (MQ=255)
                 cGGCGAAATTAAAAACCCCGGAAAAACCATGCCAc                   <  1:4740737/35‑1 (MQ=255)
                 cGGCGAAATTAAAAACCCCGGAAAAACCATGCCAc                   <  1:17609869/35‑1 (MQ=255)
                 cGGCGAAATTAAAAACCCCGGAAAAACCATGCCAc                   >  1:5036416/1‑35 (MQ=255)
                 cGGCGAAATTAAAAACCCCGGAAAAACCATGCCAc                   >  1:5890003/1‑35 (MQ=255)
                 cGGCGAAATTAAAAACCCCGGAAAAACCATGCCAc                   >  1:8328816/1‑35 (MQ=255)
                  ggCGAAATTAAAAACCCCGGAAAAACCATGCCACg                  >  1:16827012/1‑35 (MQ=255)
                  ggCGAAATTAAAAACCCCGGAAAAACCATGCCACg                  <  1:10981213/35‑1 (MQ=255)
                   gCGAAATTAAAAACCCCGGAAAAACCATGCCACGa                 <  1:19963994/35‑1 (MQ=255)
                   gCGAAATTAAAAACCCCGGAAAAACCATGCCACGa                 >  1:13602043/1‑35 (MQ=255)
                   gCGAAATTAAAAACCCCGGAAAAACCATGCCACGa                 <  1:10686758/35‑1 (MQ=255)
                    cGAAATTAAAAACCCCGGAAAAACCATTCCACGAg                >  1:1151003/1‑35 (MQ=255)
                    cGAAATTAAAAACCCCGGAAAAACCATTCCACGAg                >  1:1667408/1‑35 (MQ=255)
                    cGAAATTAAAAACCCCGGAAAAACCATGCCACGAg                <  1:3736669/35‑1 (MQ=255)
                    cGAAATTAAAAACCCCGGAAAAACCATGCCACGAg                >  1:2226662/1‑35 (MQ=255)
                     gAAATTAAAAACCCcctgccactcaccgatgtgct               >  1:5549378‑M2/1‑14 (MQ=255)
                     gAAATTAAAAACCCCGGAAAAACCATGCCACGAgc               >  1:9680220/1‑35 (MQ=255)
                     gAAATTAAAAACCCCGGAAAAACCATGCCACGAgc               <  1:14487574/35‑1 (MQ=255)
                     gAAATTAAAAACCCCGGAAAAACCATGCCACGAgc               >  1:15146611/1‑35 (MQ=255)
                     gAAATTAAAAACCCCGGAAAAACCATGCCACGAgc               >  1:19070215/1‑35 (MQ=255)
                     gAAATTAAAAACCCCGGAAAAACCATGCAACGAgc               <  1:16177861/35‑1 (MQ=255)
                      aatTTAAAAACCCcctgccactcaccgctgtgctg              >  1:11440828‑M2/1‑13 (MQ=255)
                      aaaTTAAAAACCCCGGAAAAACCATTCCACGAgcg              >  1:13768764/1‑35 (MQ=255)
                      aaaTTAAAAACCCCGGAAAAACCATGCCACGAgcg              <  1:15780399/35‑1 (MQ=255)
                       aaTTAAAAACCCcctgccactcaccgctgtgctga             >  1:519394‑M2/1‑12 (MQ=255)
                       aaTTAAAAACCCCGGAAAAACCATGCCACGAgcgc             >  1:6931628/1‑35 (MQ=255)
                       aaTTAAAAACCCCGGAAAAACCATGCCACGAgcgc             >  1:2654348/1‑35 (MQ=255)
                       aaTTAAAAACCCCGGAAAAACCATGCCACGAgcgc             >  1:1829926/1‑35 (MQ=255)
                        aTTAAAAACCCcctgccactcaccgctgtgctgat            >  1:8924742‑M2/1‑11 (MQ=255)
                         ttAAAAACCCcctgccactcaccgctgtgctgatt           >  1:11470814‑M2/1‑10 (MQ=255)
                         ttAAAAACCCCGGAAAAACCATGCCACGAGCGCTg           <  1:61699/35‑1 (MQ=255)
                          tAAAAACCCcctgccactcaccgctgtgctgatta          >  1:1249118‑M2/1‑9 (MQ=255)
                          tAAAAACCCCGGAAAAACCATGCCACGAGCGCTGa          >  1:6267438/1‑35 (MQ=255)
                          tAAAAACCCCGGAAAAACCATGCCACGAGCGCTGa          >  1:1259607/1‑35 (MQ=255)
                           gaaaccCCcctgccactcaccgctgtgctgattag         >  1:16778402‑M2/2‑8 (MQ=255)
                           aaaaaCCCcctgccactcaccgctgtgctgattag         >  1:4073277‑M2/1‑8 (MQ=255)
                           aaaaaCCCcctgccactcaccgctgtgctgattag         >  1:15671262‑M2/1‑8 (MQ=255)
                           aaaaaCCCCGGAAAAACCATGCCACGAGCGCTGAt         >  1:16113683/1‑35 (MQ=255)
                            aaacCCCcctgccactcaccgctgtgctgattaga        >  1:10404092‑M2/1‑7 (MQ=255)
                            aaaaCCCcctgccactcaccgctgtgctgattaga        >  1:17712842‑M2/1‑7 (MQ=255)
                            aaaaCCCCGGAAAAACCATGCCACGATCGCTGAtt        >  1:4536224/1‑35 (MQ=255)
                            aaaaCCCCGGAAAAACCATGCCACGAGCGCTGAtt        >  1:19412935/1‑35 (MQ=255)
                            aaaaCCCCGGAAAAACCATGCCACGAGCGCTGAtt        >  1:3391825/1‑35 (MQ=255)
                             aaaCCCcctgccactcaccgctgtgctgattagat       >  1:6734410‑M2/1‑6 (MQ=255)
                              aaCCCCGGAAAAACCATGCCACGAGCGCTGATTgg      >  1:3234925/1‑35 (MQ=255)
                              aaCCCCGGAAAAACCATGCCACGAGCGCTGATTgg      >  1:11235181/1‑35 (MQ=255)
                               cccccctgccactcaccgctgtgctgattagattc     >  1:7248720‑M2/2‑4 (MQ=255)
                               cccccctgccactcaccgctgtgctgattagattc     >  1:1560105‑M2/2‑4 (MQ=255)
                               aCCCCGGAAAAACCATGCCACGAGCGCTGATTGGt     >  1:14898064/1‑35 (MQ=255)
                               aCCCCGGAAAAACCATGCCACGAGCGCTGATTGGt     >  1:3146605/1‑35 (MQ=255)
                                ccccctgccactcaccgctgtgctgattagattcc    >  1:12033896‑M2/1‑3 (MQ=255)
                                ccccGGAAAAACCATGCCACGAGCGCTGATTGGtt    <  1:12801030/35‑1 (MQ=255)
                                 cccctgccactcaccgctgtgctgattagattcca   >  1:7315372‑M2/1‑2 (MQ=255)
                                 cccctgccactcaccgctgtgctgattagattcca   >  1:6788362‑M2/1‑2 (MQ=255)
                                 cccctgccactcaccgctgtgctgattagattcca   >  1:2870560‑M2/1‑2 (MQ=255)
                                 cccctgccactcaccgctgtgctgattagattcca   >  1:8954067‑M2/1‑2 (MQ=255)
                                 cccctgccactcaccgatgtgctgattagattcca   >  1:767713‑M2/1‑2 (MQ=255)
                                 cccGGAAAAACCATGCCACGAGCGCTGATTGGTTc   >  1:17688672/1‑35 (MQ=255)
                                 cccGGAAAAACCATGCCACGAGCGCTGATTGGTTc   <  1:9219982/35‑1 (MQ=255)
                                  ccctgccactcaccgctgtgctgattagattccag  >  1:7575757‑M2/1‑1 (MQ=255)
                                  ccctgccactcaccgctgtgctgattagattccag  >  1:7904315‑M2/1‑1 (MQ=255)
                                  ccGGAAAAACCATGCCACGAGCGCTGATTGGTTcc  >  1:15511384/1‑35 (MQ=255)
                                  ccGGAAAAACCATGCCACGAGCGCTGATTGGTTcc  <  1:14668355/35‑1 (MQ=255)
                                  |                                  
TCTATCTGTTATATGACCGGCGAAATTAAAAACCCCGGAAAAACCATGCCACGAGCGCTGATTGGTTCC  >  REL606/3428451‑3428519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.