New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1609469 =55 (0.540)5 (0.060) 3/42 NT 9.8% coding (36/207 nt) ybcW predicted protein
?REL606 2545121 = 44 (0.490)coding (1259/2067 nt) ppk polyphosphate kinase

Only 100 of 106 total aligned reads displayed.

TGCTATTAAGCATAGTTTTTACACGAACCTGCTCCTGGGAGGGGGCATCAGTGTATTGATCTTTATGC  >  REL606/1609435‑1609502
                                  |                                 
tGCTATTAAGCATAGTTTTTACACGAACCTGCTcc                                   <  1:13019658/35‑1 (MQ=255)
tGCTATTAAGCATAGTTTTTACACGAACCTGCTcc                                   <  1:13206818/35‑1 (MQ=255)
cccggcgcagagaagataacgtgcacgcctgcttc                                   >  1:4474336‑M1/35‑35 (MQ=255)
cccggcgcagagaagataacgtgcacgcctgcttc                                   <  1:17561066‑M1/1‑1 (MQ=255)
cccggcgcagagaagataacgtgcacgcctgcttc                                   >  1:7237557‑M1/35‑35 (MQ=255)
cccggcgcagagaagataacgtgcacgcctgcttc                                   >  1:8718516‑M1/35‑35 (MQ=255)
cccggcgcagagaagataacgtgcacgcctgcttc                                   <  1:9146927‑M1/1‑1 (MQ=255)
 gCTATTAAGCATAGTTTTTACACGAACCTGCTCCt                                  >  1:4581717/1‑35 (MQ=255)
 gCTATTAAGCATAGTTTTTACACGAACCTGCTCCt                                  >  1:17063752/1‑35 (MQ=255)
 ccggcgcagagaagataacgtgcacgcctgcttCt                                  <  1:12677065‑M1/2‑1 (MQ=255)
 ccggcgcagagaagataacgtgcacgcctgcttCt                                  <  1:11633055‑M1/2‑1 (MQ=255)
 ccggcgcagagaagataacgtgcacgcctgcttCt                                  <  1:17756231‑M1/2‑1 (MQ=255)
 ccggcgcagagaagataacgtgcacgcctgcttCt                                  >  1:9290921‑M1/34‑35 (MQ=255)
  cggcgcagagaagataacgtgcacgcctgcttCTg                                 <  1:16874693‑M1/3‑1 (MQ=255)
  cggcgcagagaagataacgtgcacgcctgcttCTg                                 >  1:13175194‑M1/33‑35 (MQ=255)
  cggcgcagagaagataacgtgcacgcctgcttCTg                                 >  1:13259693‑M1/33‑35 (MQ=255)
  cggcgcagagaagataacgtgcacgcctgcttCTg                                 >  1:6265230‑M1/33‑35 (MQ=255)
  cggcgcagagaagataacgtgcacgcctgcttCTg                                 <  1:1236060‑M1/3‑1 (MQ=255)
  cggcgcagagaagataacgtgcacgcctgcttCTg                                 >  1:18488758‑M1/33‑35 (MQ=255)
  cggcgcagagaagataacgtgcacgcctgcttCTg                                 >  1:16068402‑M1/33‑35 (MQ=255)
   ggcgcagagaagataacgtgcacgcctgcttCTgg                                <  1:8241151‑M1/4‑1 (MQ=255)
   ggcgcagagaagataacgtgcacgcctgcttCTgg                                <  1:11960714‑M1/4‑1 (MQ=255)
   ggcgcagagaagataacgtgcacgcctgcttCTgg                                <  1:8438448‑M1/4‑1 (MQ=255)
   ggcgcagagaagataacgtgcacgcctgcttCTgg                                <  1:16472067‑M1/4‑1 (MQ=255)
    gcgcagagaagataacgtgcacgcctgcttCtggt                               <  1:19660272‑M1/5‑2 (MQ=255)
    gcgcagagaagataacgtgcacgcctgcttCTggg                               <  1:7420024‑M1/5‑1 (MQ=255)
     ttAAGCATAGTTTTTACACGAACCTGCTCCTGGGa                              >  1:2363638/1‑35 (MQ=255)
     ttAAGCATAGTTTTTACACGAACCTGCTCCTGGGa                              >  1:18042204/1‑35 (MQ=255)
     cgcagagaaggtaacgtgcacgcctgcttCTGGGa                              <  1:10785066‑M1/6‑1 (MQ=255)
     cgcagagaagataacgtgcacgcctgcttctggca                              <  1:9413159‑M1/6‑3 (MQ=255)
     cgcagagaagataacgtgcacgcctgcttctggca                              <  1:5585775‑M1/6‑3 (MQ=255)
     cgcagagaagataacgtgcacgcctgcttCTGGGa                              <  1:3755660‑M1/6‑1 (MQ=255)
      tAAGCATAGTTTTTACACGAACCTGCTCCTGGGAg                             <  1:9473035/35‑1 (MQ=255)
      gcagagaagataacgtgcacgcctgcttctggcag                             <  1:16247093‑M1/7‑4 (MQ=255)
      gcagagaagataacgtgcacgcctgcttCTGGGAg                             <  1:1431097‑M1/7‑1 (MQ=255)
      gcagagaagataacgtgcacgcctgcttCTGGGAg                             <  1:9277082‑M1/7‑1 (MQ=255)
       cagagaagataacgtgcacgcctgcttctgggcgg                            <  1:3444392‑M1/8‑4 (MQ=255)
       cagagaagataacgtgcacgcctgcttCTGGCAgg                            <  1:10828342‑M1/8‑1 (MQ=255)
       aaGCATAGTTTTTACACGAACCTGCTCCTGGGAgg                            >  1:14869789/1‑35 (MQ=255)
        agagaagataacgtgcacgcctgcttCTGGCAggg                           <  1:17710880‑M1/9‑1 (MQ=255)
        aGCATAGTTTTTACACGAACCTGCTCCTGGGAgtg                           >  1:4589761/1‑33 (MQ=255)
        aGCATAGTTTTTACACGAACCTGCTCCTGGGAggg                           <  1:11252169/35‑1 (MQ=255)
         gagaagataacgtgcacgcctgcttCTGGGAgggg                          <  1:6756755‑M1/10‑1 (MQ=255)
         gCATAGTTTTTACACGAACGTGCTCCTGGGAgggg                          <  1:10554845/35‑1 (MQ=255)
         gCATAGTTTTTACACGAACCTGCTCCTGGGAggtg                          >  1:532904/1‑33 (MQ=255)
         gCATAGTTTTTACACGAACCTGCTCCTGGGAgggg                          >  1:19555683/1‑35 (MQ=255)
         gCATAGTTTTTACACGAACCTGCTCCTGGGAgggg                          >  1:16985945/1‑35 (MQ=255)
         gCATAGTTTTTACACGAACCTGCTCCTGGGAgggg                          >  1:13242842/1‑35 (MQ=255)
          cATAGTTTTTACACGAACCTGCTCCTGGGAggggg                         <  1:7817791/35‑1 (MQ=255)
          agaagataacgtgcacgcctgcttCTGggaggcgg                         <  1:10682974‑M1/11‑4 (MQ=255)
          agaagataacgtgcacgcctgcttCTGGGAggggg                         <  1:9340590‑M1/11‑1 (MQ=255)
          agaagataacgtgcacgcctgcttCTGGCaggggc                         <  1:6431477‑M1/11‑2 (MQ=255)
          agaagataacgtgcacgcctgcttCTGGCAggggg                         <  1:9476731‑M1/11‑1 (MQ=255)
           aTAGTTTTTACACGAACCTGCTCCTGGGAGGGGGc                        <  1:13776609/35‑1 (MQ=255)
           aTAGTTTTTACACGAACCTGCTCCTGGGAGGGGGc                        >  1:36649/1‑35 (MQ=255)
           aTAGTTTTTACACGAACCTGCTCCTGGGAGGGGGc                        <  1:306470/35‑1 (MQ=255)
            tattttttACACGAACCTGCTCCTGGGAGGGGGCa                       >  1:15348551/4‑35 (MQ=255)
             aGTTTTTACACGAACCTGCTCCTGGGAGGGGGCAt                      >  1:3068995/1‑35 (MQ=255)
             aGTTTTTACACGAACCTGCTCCTGGGAGGGGGCAt                      >  1:7997592/1‑35 (MQ=255)
              gTTTTTACACGAACCTGCTCCTGGGAGGGGGCATc                     <  1:14708515/35‑1 (MQ=255)
              gTTTTTACACGAACCTGCTCCTGGGAGGGGGCATc                     <  1:1885684/35‑1 (MQ=255)
               tttttACACGAACCTGCTCCTGGGAGGGGGCATCa                    <  1:4797910/35‑1 (MQ=255)
               tttttACACGAACCTGCTCCTGGGAGGGGGCATCa                    <  1:2905582/35‑1 (MQ=255)
               tttttACACGAACCTGCTCCTGGGAGGGGGCATCa                    <  1:12883241/35‑1 (MQ=255)
                ttttACACGAACCTGCTCCTGGGAGGGGGCATCAg                   >  1:4730519/1‑35 (MQ=255)
                ttttACACGAACCTGCTCCTGGGAGGGGGCATCAg                   >  1:17755640/1‑35 (MQ=255)
                ttttACACGAACCTGCTCCTGGGAGGGGGCATCAg                   <  1:13703895/35‑1 (MQ=255)
                 tttACACGAACCTGCTCCTGGGAGGGTGCATCAgt                  >  1:14601140/1‑35 (MQ=255)
                 tttACACGAACCTGCTCCTGGGAGGGGGCATCAgt                  >  1:19957603/1‑35 (MQ=255)
                  ttACACGAACCTGCTCCTGGGAGGGGGCATCAgtg                 <  1:39997/35‑1 (MQ=255)
                   tACACGAACCTGCTCCTGGGAGGGGGCATCAgtgt                >  1:10086064/1‑35 (MQ=255)
                   tACACGAACCTGCTCCTGGGAGGGGGCATCAgtgt                <  1:10895820/35‑1 (MQ=255)
                    actcGAACCTGCTCCTGGGAGGGGGCATCAGTGTa               <  1:4556310/32‑1 (MQ=255)
                    acacGAACCTGCTCCTGGGAGGGGGCATCAGTGTa               <  1:3850793/35‑1 (MQ=255)
                    acacGAACCTGCTCCTGGGAGGGGGCATCAGTGTa               <  1:18789737/35‑1 (MQ=255)
                    acacGAACCTGCTCCTGGGAGGGGGCATCAGTGTa               <  1:1814608/35‑1 (MQ=255)
                    acacGAACCTGCTCCTGGGAGGGGGCATCAGTGTa               >  1:3049716/1‑35 (MQ=255)
                    acacGAACCTGCTCCTGGGAGGGGGCATCAGTGTa               <  1:11739926/35‑1 (MQ=255)
                    acacGAACCTGCTACTGGGAGGGGGCATCAGTGTa               <  1:8292657/35‑1 (MQ=255)
                     cacGAACCTGCTCCTGGGAGGGGGCATCAGTGTAt              <  1:19415824/35‑1 (MQ=255)
                     cacGAACCTGCTCCTGGGAGGGGGAATCAGTGTAt              <  1:3562074/35‑1 (MQ=255)
                       cGAACCTGCTCCTGGGAGGGGGCATCAGTGTATTg            <  1:14251710/35‑1 (MQ=255)
                       cGAACCTGCTCCTGGGAGGGGGCATCAGTGTATTg            >  1:10935525/1‑35 (MQ=255)
                       cGAACCTGCTCCTGGGAGGGGGCATCAGTGTATTg            >  1:12668049/1‑35 (MQ=255)
                        gAACCTGCTCCTGTGAGGGGGCATCAGTGTATTGa           >  1:4454987/1‑35 (MQ=255)
                        gAACCTGCTCCTGGGAGGGGGCATCAGTGTATTGa           <  1:10067973/35‑1 (MQ=255)
                        gAACCTGCTCCTGGGAGGGGGCATCAGTGTATTGa           >  1:11360723/1‑35 (MQ=255)
                         aaCCTGCTCCTGGGAGGGGGCATCAGTGTATTGAt          <  1:5768589/35‑1 (MQ=255)
                          aCCTGCTCCTGGGAGGGGGCATCAGTGTATTGATc         >  1:16583553/1‑35 (MQ=255)
                          aCCTGCTCCTGGGAGGGGGCATCAGTGTATTGATc         <  1:11138371/35‑1 (MQ=255)
                          aCCTGCTCCTGGGAGGGGGCATCAGTGTATTGATc         >  1:8683256/1‑35 (MQ=255)
                          aCCTGCTCCTGGGACGGGGCATCAGTGTATTGATc         >  1:11049991/1‑35 (MQ=255)
                            cTGCTCCTGGGAGGGGGCATCAGTGTATTGATCtt       >  1:18234259/1‑35 (MQ=255)
                             tGCTCCTGGGAGGGGGCATCAGTGTATTGATCttt      >  1:2869741/1‑35 (MQ=255)
                             tGCTCCTGGGAGGGGGCATCAGTGTATTGATCttt      >  1:386796/1‑35 (MQ=255)
                               cTCCTGGGAGGGGGCATCAGTGTATTGATCTTTAt    >  1:19847084/1‑35 (MQ=255)
                                tCCTGGGAGGGGGCATCAGTGTATTGATCTTTATg   >  1:13541955/1‑35 (MQ=255)
                                tCCTGGGAGGGGGCATCAGTGTATTGATCTTTATg   >  1:16445844/1‑35 (MQ=255)
                                tCCTGGGAGGGGGCATCAGTGTATTGATCTTTATg   >  1:162406/1‑35 (MQ=255)
                                 ccTGGGAGGGGGCATCAGTGTATTGATCTTTATGc  <  1:10486993/35‑1 (MQ=255)
                                  |                                 
TGCTATTAAGCATAGTTTTTACACGAACCTGCTCCTGGGAGGGGGCATCAGTGTATTGATCTTTATGC  >  REL606/1609435‑1609502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.