New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1689078 =46 (0.450)9 (0.120) 4/34 NT 15.7% coding (362/636 nt) nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
?REL606 = 1996353 64 (0.880)coding (1494/1644 nt) yeeO predicted multidrug efflux system

Only 100 of 132 total aligned reads displayed.

CGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTA  >  REL606/1996319‑1996387
                                  |                                  
cGGCAAACATTCCCATCCAGACACCAACCACAccc                                    >  1:19884259/1‑35 (MQ=255)
 ggCAAACATTCCCATCCAGACACCAACCACACCCc                                   <  1:17682290‑M2/35‑2 (MQ=255)
 ggCAAACATTCCCATCCAGACACCAACCACACCCc                                   >  1:7131349‑M2/1‑34 (MQ=255)
 ggCAAACATTCCCATCCAGACACCAACCACACCCc                                   <  1:13477524‑M2/35‑2 (MQ=255)
 ggCAAACATTCCCATCCAGACACCAACAACACCCc                                   >  1:14999758‑M2/1‑34 (MQ=255)
 gccAACCATTCACATCCAGACACCAACCACAcccc                                   <  1:14435126/33‑1 (MQ=25)
  gCAAACATTCCCATCCAGACACCAACCACACCCca                                  <  1:15811488‑M2/35‑3 (MQ=255)
  gCAAACATTCCCATCCAGACACCAACCACACCCca                                  >  1:3255841‑M2/1‑33 (MQ=255)
  gCAAACATTCCCATCCAGACACCAACCACACCCca                                  <  1:8007759‑M2/35‑3 (MQ=255)
   cgaacaTTCCCATCCAGACACCAACCACACCCcag                                 >  1:7788969‑M2/3‑32 (MQ=255)
   cAAACATTCCCATCCAGACACCAACCACACCCcag                                 <  1:4542821‑M2/35‑4 (MQ=255)
   cAAACATTCCCATCCAGACACCAACCACACCCcag                                 <  1:14052991‑M2/35‑4 (MQ=255)
   cAAACATTCCCATCCAGACACCAACCACACCCcag                                 <  1:6321948‑M2/35‑4 (MQ=255)
   cAAACATTCCCATCCAGACACCAACCACACCCcag                                 <  1:869049‑M2/35‑4 (MQ=255)
   cAAACATTCCCATCCAGACACCAACCACACCCcag                                 <  1:10893077‑M2/35‑4 (MQ=255)
    aaaCATTCCCATCCAGACACCAACCACACCCcagc                                <  1:13219822‑M2/35‑5 (MQ=255)
    aaaCATTCCCATCCAGACACCAACCACACCCcagc                                <  1:8722101‑M2/35‑5 (MQ=255)
    aaaCATTCCCATCCAGACACCAACCACACCCcaga                                <  1:5572514‑M2/35‑5 (MQ=255)
    aaaCATTCCCATCCAGACACCAACCACACACcagc                                >  1:6583087‑M2/1‑31 (MQ=255)
    aaaCATTACCATCCAGACACCAACCACACCCcagc                                >  1:4085891‑M2/1‑31 (MQ=255)
      aCATTCCCATCCAGACACCAACCACACCCcagcca                              <  1:11845146‑M2/35‑7 (MQ=255)
      aCATTCCCATCCAGACACCAACCACACCCcagcca                              <  1:11768‑M2/35‑7 (MQ=255)
      aCATTCCCATCCAGACACCAACCACACCCcagcca                              <  1:829864‑M2/35‑7 (MQ=255)
        aTTCCCATCCAGACACCAACCACACCCCAGCCAAg                            >  1:20255839/1‑35 (MQ=255)
         ttCCCATCCAGACACCAACCACACCCCAGCCAAGc                           >  1:13135677/1‑35 (MQ=255)
         ttCCCATCCAGACACCAACCACACCCCAGCCAAGc                           >  1:3404697/1‑35 (MQ=255)
         ttCCCATCCAGACACCAACCACACCCCAGCCAAGc                           >  1:18108433/1‑35 (MQ=255)
          tCCCATCCAGACACCAACCACACCCCAGCCAAGCa                          >  1:19329342/1‑35 (MQ=255)
          ccccACCCAGACCCCAACCACACCCCAGCCAAGCa                          <  1:98443/34‑1 (MQ=255)
           cccATCCAGACCCCAACCACACCCCAGCCAAGCAt                         <  1:1559412/35‑1 (MQ=255)
           cccATCCAGACACCAACCACACCCCAGCCAAGCAt                         >  1:3442580/1‑35 (MQ=255)
           cccACCCAGACACCAACAACACCCCAGCCAAGCAt                         <  1:13754839/35‑1 (MQ=37)
            ccATCCAGACACCAACCACACCCCAGCCAAGCATg                        <  1:14233974/35‑1 (MQ=255)
             cATCCAGACCCCAACCACACCCCAGCCAAGCATGa                       <  1:3053906/35‑1 (MQ=255)
             cATCCAGACACCAACCACACCCCAGCCAAGCATGa                       >  1:4394420/1‑35 (MQ=255)
             cATCCAGACACCAACCACACCCCAGCCAAGCATGa                       >  1:861922/1‑35 (MQ=255)
               tCCAGACACCAACCACACCCCAGCCAAGCATGAtt                     >  1:2948814/1‑35 (MQ=255)
                 cAGACCCCAACCACACCCCAGCCAAGCATGATTcc                   <  1:19548576/35‑1 (MQ=255)
                 cAGACACCAACCACACCCCAGCCAAGCATGATTcc                   >  1:17994879/1‑35 (MQ=255)
                 cAGACACCAACCACACCCCAGCCAAGCATGATTcc                   >  1:6582298/1‑35 (MQ=255)
                 cAGACACCAACCACACCCCAGCCAAGCATGATTcc                   >  1:8527267/1‑35 (MQ=255)
                  aGACACCAACCACACCCCAGCCAAGCATGATTccc                  >  1:3969233/1‑35 (MQ=255)
                  aGACACCAACCACACCCCAGCCAAGCATGATTccc                  >  1:5731563/1‑35 (MQ=255)
                  aGACACCAACCACACCCCAGCCAAGCATGATTccc                  >  1:3202512/1‑35 (MQ=255)
                  aGACACCAACCACACCCCAGCCAAGCATGATTccc                  >  1:13336727/1‑35 (MQ=255)
                  aGACACCAACCACACCCCAGCCAAGCATGATTccc                  <  1:7098418/35‑1 (MQ=255)
                  aGACACCAACCACACCCCAGCCAAGCATGATTccc                  >  1:17938196/1‑35 (MQ=255)
                  aGACACCAACCACACCCCAGCAAAGCATGATTccc                  <  1:13427656/35‑1 (MQ=255)
                   gACACCAACCACACCCCAGCCAAGCATGATTCCCa                 <  1:4265178/35‑1 (MQ=255)
                    tcacCAACCACACCCCAGCCAAGCATGATTCCCAg                <  1:10954747/34‑1 (MQ=255)
                    accccaaccaCACCCCAGCCAAGCATGATTCCCAg                <  1:7312387/32‑1 (MQ=255)
                    acacCAACCCCACCCCAGCCAAGCATGATTCCCAg                <  1:11980847/35‑1 (MQ=255)
                     cacCAACCACACCCCAGCCAAGCATGATTCCCAGc               <  1:8648851/35‑1 (MQ=255)
                     cacCAACCACACCCCAGCCAAGCATGATTCCCAGc               <  1:3183980/35‑1 (MQ=255)
                      accaaccaCACCCCAGCCAAGCATGATTCCCAGca              >  1:14597630/1‑35 (MQ=255)
                      accaaccaCACCCCAGCCAAGCATGATTCCCAGca              >  1:11741818/1‑35 (MQ=255)
                       ccaaccaCACCCCAGCCAAGCATGATTCCCAGcac             >  1:17791637/1‑35 (MQ=255)
                       ccaaccaCACCCCAGCCAAGCATGATTCCCAGcac             >  1:4332577/1‑35 (MQ=255)
                       ccaaccaCACCCCAGCCAACCATGATTCCCAGcca             >  1:14542389/1‑33 (MQ=38)
                        caaccaCACCCCAGCCAAGCATGATTCCCAGcaca            >  1:17810412/1‑35 (MQ=255)
                        caaccaCACCCCAGCCAAGCATGATTCCCAGcaca            >  1:1562920/1‑35 (MQ=255)
                        caaccaCACCCCAGCCAAGCATGATTCCCAGcaca            <  1:8728434/35‑1 (MQ=255)
                        caaccaCACCCCAGCCAAGCATGATTCCCAGcaca            <  1:5114704/35‑1 (MQ=255)
                         aaccaCACCCCAGCCAAGCATGATTCCCAGCACAt           <  1:16789835/35‑1 (MQ=255)
                         aaccaCACCCCAGCCAAGCATGATTCCCAGCACAt           <  1:17165262/35‑1 (MQ=255)
                         aaccaCACCCCAGCCAAGCATGATTCCCAGCACAt           <  1:2444182/35‑1 (MQ=255)
                         aaccaCACCCCAGCCAAGCATGATTCCCAGCACAt           <  1:4283426/35‑1 (MQ=255)
                          cccacACCCcagccaacgtcgtattaaacactgca          >  1:14410103‑M2/2‑9 (MQ=255)
                          cccaCACCCCAGCCAAGCATGATTCCCAGCACATa          <  1:14336755/34‑1 (MQ=255)
                          accaCACCCcagccaacgtcgtattaaacactgca          >  1:11073685‑M2/1‑9 (MQ=255)
                          accaCACCCCAGCCAAGCATGATTCCCAGCACATa          <  1:2332034/35‑1 (MQ=255)
                          accaCACCCCAGCCAAGCATGATTCCCAGCACATa          >  1:297477/1‑35 (MQ=255)
                          accaCACCCCAGCCAAGCATGATTCCCAGCACATa          >  1:7140475/1‑35 (MQ=255)
                           ccaCACCCcagccaacgtcgtattaaacactgcat         >  1:10131294‑M2/1‑8 (MQ=255)
                           ccaCACCCCAGCCAAGCATGATTCCCAGCACATaa         >  1:4208905/1‑35 (MQ=255)
                           ccaCACCCCAGCCAAGCATGATTCCCAGCACATaa         <  1:3627811/35‑1 (MQ=255)
                            cccaccccagccaacgtcgtattaaacactgcatt        >  1:18851200‑M2/3‑7 (MQ=255)
                            cccacCCCAGCCAAGCATGATTCCCAGCACATAAc        <  1:1201714/33‑1 (MQ=255)
                            cacaCCCcagccaacgtcgtattaaacactgcatt        >  1:5513210‑M2/1‑7 (MQ=255)
                            cacaCCCCAGCCAAGCATGATTCCCAGCACATAAc        <  1:7693141/35‑1 (MQ=255)
                            cacaCCCCAGCCAAGCATGATTCCCAGCACATAAc        <  1:8287046/35‑1 (MQ=255)
                            cacaCCCCAGCCAAGCATGATTCCCAGCACATAAc        >  1:20582458/1‑35 (MQ=255)
                            cacaCCCCAGCCAAGCATGATTCCCAGCACATAAc        <  1:2962862/35‑1 (MQ=255)
                            cacaCCCCAGCCAAGCATGATTCCCAGCACATAAc        <  1:5047711/35‑1 (MQ=255)
                            caaaCCCcagccaacgtcgtattaaacactgcatt        >  1:19101150‑M2/1‑7 (MQ=255)
                             acacCCcagccaacgtcgtattaaacactgcattc       >  1:19492857‑M2/1‑6 (MQ=255)
                             acacCCCAGCCAAGCATGATTCCCAGCACATAAcc       <  1:4540547/35‑1 (MQ=255)
                              ccccccagccaacgtcgtattaaacactgcattcg      >  1:11352624‑M2/3‑5 (MQ=255)
                              cacCCCAGCCAAGCATGATTCCCAGCACATAACCg      <  1:12832856/35‑1 (MQ=255)
                               acCCcagccaacgtcgtattaaacactgcattcgg     >  1:7514103‑M2/1‑4 (MQ=255)
                               acCCcagccaacgtcgtattaaacactgcattcgg     >  1:908720‑M2/1‑4 (MQ=255)
                               acCCCAGCCAAGCATGATTCCCAGCACATAACCGa     >  1:7461089/1‑35 (MQ=255)
                               acCCCAGCCAAGCATGATTCCCAGCACATAACCGa     >  1:241949/1‑35 (MQ=255)
                               acCCCAGCCAAGCATGATTCCCAGCACATAACCGa     >  1:16694993/1‑35 (MQ=255)
                                ccccATCCAAGCATGATTCCCAGCACATAACCGAc    >  1:16280917/1‑35 (MQ=255)
                                 cccagccaacgtcgtattaaacactgcattcggct   >  1:5260723‑M2/1‑2 (MQ=255)
                                 cccagccaacgtcgtattaaacactgcattcggct   >  1:5125971‑M2/1‑2 (MQ=255)
                                 cccagccaacgtcgtattaaacactgcattcggct   >  1:9830077‑M2/1‑2 (MQ=255)
                                 cccAGCCAAGCATGATTCCCAGCACATAACCGACt   <  1:7929405/35‑1 (MQ=255)
                                  ccagccaacgtcgtattaaacactgcattcggctg  >  1:1855035‑M2/1‑1 (MQ=255)
                                  |                                  
CGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTA  >  REL606/1996319‑1996387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.