New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2064681 =76 (0.740)9 (0.120) 3/36 NT 12.3% coding (596/1218 nt) wcaC predicted glycosyl transferase
?REL606 4179328 = 71 (0.920)coding (213/591 nt) yjaG hypothetical protein

Only 100 of 193 total aligned reads displayed.

CCGTTAAAGACGCAAAAGTAAATTTCGACAGCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCAGCCG  >  REL606/4179294‑4179362
                                  |                                  
ccGTTAAAGACGCAAAAGTAAATTTCGACAGCCaa                                    >  1:8704950/1‑35 (MQ=255)
ccGTTAAAGACGCAAAAGTAAATTTCGACAGCCaa                                    >  1:20454706/1‑35 (MQ=255)
ccGTTAAAGACGCAAAAGTAAATTTCGACAGCCaa                                    >  1:13486044/1‑35 (MQ=255)
 cGTTAAAGACGCAAAAGTAAATTTCTACAGCCAAc                                   >  1:12383129/1‑35 (MQ=255)
 cGTTAAAGACGCAAAAGTAAATTTCGACAGCCAAc                                   >  1:6494494/1‑35 (MQ=255)
  gTTAAAGACGCAAAAGTAAATTTCGACAGCCAACt                                  >  1:15420063/1‑35 (MQ=255)
  gTTAAAGACGCAAAAGTAAATTTCGACAGCCAACt                                  >  1:14836243/1‑35 (MQ=255)
  gTTAAAGACGCAAAAGTAAATTTCGACAGCCAACt                                  >  1:11933227/1‑35 (MQ=255)
  gTTAAAGACGCAAAAGTAAATTTCGACAGCCAACt                                  >  1:1243091/1‑35 (MQ=255)
    tAAAGACGCAAAAGTAAATTTCGACAGCCAACTgg                                >  1:19110216/1‑35 (MQ=255)
     aaaGACGCAAAAGTAAATTTCGACAGCCAACTGga                               >  1:10077247/1‑35 (MQ=255)
     aaaGACGCAAAAGTAAATTTCGACAGCCAACTGga                               >  1:17422397/1‑35 (MQ=255)
     aaaGACGCAAAAGTAAATTTCGACAGCCAACTGga                               >  1:9774550/1‑35 (MQ=255)
     aaaGACGCAAAAGTAAATTTCCACAGCCAACTGga                               >  1:9260542/1‑35 (MQ=255)
      aaGACGCAAAAGTAAATTTCGACAGCCAACTGgag                              >  1:17256433/1‑35 (MQ=255)
      aaGACGCAAAAGTAAATTTCGACAGCCAACTGgag                              >  1:5224327/1‑35 (MQ=255)
      aaGACGCAAAAGTAAATTTCGACAGCCAACTGgag                              >  1:10078089/1‑35 (MQ=255)
      aaGACGCAAAAGTAAATTTCGACAGCCAACTGgag                              >  1:12106020/1‑35 (MQ=255)
       aGACGCAAAAGTAAATTTCGACAGCCAACTGgaga                             >  1:14659740/1‑35 (MQ=255)
       aGACGCAAAAGTAAATTTCGACAGCCAACTGgaga                             >  1:18635768/1‑35 (MQ=255)
       aGACGCAAAAGTAAATTTCGACAGCCAACTGgaga                             >  1:19347537/1‑35 (MQ=255)
       aGACGCAAAAGTAAATTTCGACAGCCAACTGgaga                             >  1:12303042/1‑35 (MQ=255)
         aCGCAAAAGTAAATTTCGACAGCCAACTGGAGaaa                           >  1:2500059/1‑35 (MQ=255)
         aCGCAAAAGTAAATTTCGACAGCCAACTGGAGaaa                           >  1:13725095/1‑35 (MQ=255)
         aCGCAAAAGTAAATTTCGACAGCCAACTGGAGaaa                           >  1:11982059/1‑35 (MQ=255)
         aCGCAAAAGTAAATTTCGACAGCCAACTGGAGaaa                           >  1:5287162/1‑35 (MQ=255)
         aCGCAAAAGTAAATTACGACAGCCAACTGGAGaaa                           >  1:5646314/1‑35 (MQ=255)
          cGCAAAAGTAAATTTCGACAGCCAACTGGAGAAAt                          >  1:6280516/1‑35 (MQ=255)
          cGCAAAAGTAAATTTCGACAGCCAACTGGAGAAAt                          >  1:23718/1‑35 (MQ=255)
          cGCAAAAGTAAATTTCGACAGCCAACTGGAGAAAt                          >  1:8969979/1‑35 (MQ=255)
           gCAAAAGTAAATTTCGACAGCCAACTGGAGAAAtt                         >  1:12837832/1‑35 (MQ=255)
           gCAAAAGTAAATTTCGACAGCCAACTGGAGAAAtt                         >  1:11140238/1‑35 (MQ=255)
           gCAAAAGTAAATTTCGACAGCCAACTGGAGAAAtt                         >  1:18005656/1‑35 (MQ=255)
            cAAAAGTAAATTTCGACAGCCAACTGGAGAAAttt                        >  1:4291321/1‑35 (MQ=255)
            cAAAAGTAAATTTCGACAGCCAACTGGAGAAAttt                        >  1:15042968/1‑35 (MQ=255)
            aaaaaGTAATTTCCCCCAGCCAACTGGAGAAAttt                        <  1:10308167/34‑1 (MQ=16)
              aaaGTAAATTTCGACAGCCAACTGGAGAAATTTga                      >  1:988721/1‑35 (MQ=255)
              aaaGTAAATTTCGACAGCCAACTGGAGAAATTTga                      >  1:15164775/1‑35 (MQ=255)
               aaGTAAATTTCGCCAGCCAACTGGAGAAATTTgaa                     <  1:6004765/35‑1 (MQ=255)
               aaGTAAATTTCGACAGCCAACTGGAGAAATTTgaa                     >  1:19991798/1‑35 (MQ=255)
                aGTAAATTTCGACAGCCAACTGGAGAAATTTgaag                    >  1:2765900/1‑35 (MQ=255)
                aGTAAATTTCGACAGCCAACTGGAGAAATTTgaag                    >  1:3597459/1‑35 (MQ=255)
                aGTAAATTTCGACAGCCAACTGGAGAAATTTgaag                    >  1:15693869/1‑35 (MQ=255)
                aGTAAATTTCGACAGCCAACTGGAGAAATTTgaag                    >  1:20195258/1‑35 (MQ=255)
                aGTAAATTTCGACAGCCAACTGGAGAAATTTgaag                    >  1:12592490/1‑35 (MQ=255)
                 gTAAATTTCGACAGCCAACTGGAGAAATTTgaaga                   >  1:11443588/1‑35 (MQ=255)
                 aaaatttcccccagccaACTGGAGAAATTTgaaga                   <  1:4553460‑M2/18‑1 (MQ=255)
                  tAAATTTCGACAGCCAACTGGAGAAATTTgaagaa                  >  1:14308771/1‑35 (MQ=255)
                  tAAATTCCCCCAGCCAACTGGAGAAATTTgaagaa                  <  1:444530/35‑1 (MQ=25)
                  tAAATTCCCCCAGCCAACTGGAGAAATTTgaagaa                  <  1:1023067/35‑1 (MQ=25)
                  tAAATTCCCCCAGCCAACTGGAGAAATTTgaagaa                  <  1:11463966/35‑1 (MQ=25)
                    aaTTTCGACAGCCAACTGGAGAAATTTGAAGAAGc                >  1:18821686/1‑35 (MQ=255)
                    aaTTTCGACAGCCAACTGGAGAAATTTGAAGAAGc                >  1:5929911/1‑35 (MQ=255)
                     tttcccccagccaACTGGAGAAATTTGAAGAAGCg               <  1:6145948‑M2/22‑1 (MQ=255)
                     attccgccagccaACTGGAGAAATTTGAAGAAGCg               <  1:20568271‑M2/22‑1 (MQ=255)
                      ttcccccagccaACTGGAGAAATTTGAAGAAGCGa              <  1:4988885‑M2/23‑1 (MQ=255)
                       ttCGCCAGCCAACTGGAGAAATTTGAAGAAGCGAt             <  1:17795792/35‑1 (MQ=255)
                       ttCGACAGCCAACTGGAGAAATTTGAAGAAGCGAt             >  1:12872584/1‑35 (MQ=255)
                       ttCGACAGCCAACTGGAGAAATTTGAAGAAGCGAt             >  1:5131788/1‑35 (MQ=255)
                        tCGACAGCCAACTGGAGAAATTTGAAGAAGCGAtt            >  1:13064807/1‑35 (MQ=255)
                        cccccagccaACTGGAGAAATTTGAAGAAGCGAtt            <  1:19633935‑M2/25‑1 (MQ=255)
                        cccccagccaACTGGAGAAATTTGAAGAAGCGAtt            <  1:4665525‑M2/25‑1 (MQ=255)
                        cccccagccaACTGGAGAAATTTGAAGAAGCGAtt            <  1:17100819‑M2/25‑1 (MQ=255)
                         ccccagccaACTGGAGAAATTTGAAGAAGCGATTc           <  1:15332278‑M2/26‑1 (MQ=255)
                         cGACAGCCAACTGGAGAAATTTGAAGAAGCGATTc           >  1:8178535/1‑35 (MQ=255)
                         cGACAGCCAACTGGAGAAATTTGAAGAAGCGATTc           >  1:18335468/1‑35 (MQ=255)
                          gccagccaACTGGAGAAATTTGAAGAAGCGATTcc          <  1:15808008‑M2/27‑1 (MQ=255)
                          gACAGCCAACTGGAGAAATTTGAAGAAGCGATTcc          >  1:8120520/1‑35 (MQ=255)
                          gACAGCCAACTGGAGAAATTTGAAGAAGCGATTcc          >  1:13347017/1‑35 (MQ=255)
                          cccagccaACTGGAGAAATTTGAAGAAGCGATTcc          <  1:348107‑M2/27‑1 (MQ=255)
                           aCAGCCAACTGGAGAAATTTGAAGAAGCGATTCCt         >  1:11799064/1‑35 (MQ=255)
                           aCAGCCAACTGGAGAAATTTGAAGAAGCGATTCCt         >  1:18875865/1‑35 (MQ=255)
                            cagccaACTGGAGAAATTTGAAGAAGCGATTCCtt        <  1:3621379‑M2/29‑1 (MQ=255)
                            cagccaACTGGAGAAATTTGAAGAAGCGATTCCtt        <  1:13954966‑M2/29‑1 (MQ=255)
                            cagccaACTGGAGAAATTTGAAGAAGCGATTCCtt        >  1:19705683‑M2/7‑35 (MQ=255)
                            cagccaACTGGAGAAATTTGAAGAAGCGATTCCtt        >  1:16208999‑M2/7‑35 (MQ=255)
                            cagccaACTGGAGAAATTTGAAGAAGCGATTCCtt        <  1:18549264‑M2/29‑1 (MQ=255)
                             agccaACTGGAGAAATTTGAAGAAGCGATTCCTTc       >  1:13825741‑M2/6‑35 (MQ=255)
                             agccaACTGGAGAAATTTGAAGAAGCGATTCCTTc       <  1:20263342‑M2/30‑1 (MQ=255)
                              gccgACTGGAGAAATTTGAAGAAGCGATTCCTTCa      <  1:14114589‑M2/31‑1 (MQ=255)
                              gccaACTGGAGAAATTTGAAGAAGCGATTCCTTCa      <  1:2694775‑M2/31‑1 (MQ=255)
                              gccaACTGGAGAAATTTGAAGAAGCGATTCCTTCa      <  1:15938525‑M2/31‑1 (MQ=255)
                              gccaACTGGAGAAATTTGAAGAAGCGATTCCTTCa      >  1:8525387‑M2/5‑35 (MQ=255)
                              gccaACTGGAGAAATTTGAAGAAGCGATTCCTTCa      <  1:12253835‑M2/31‑1 (MQ=255)
                              gccaACTGGAGAAATTTGAAGAAGCGATTCCTTCa      >  1:14270‑M2/5‑35 (MQ=255)
                              gccaACTGGAGAAATTTGAAGAAGCGATTCCTTCa      <  1:12912670‑M2/31‑1 (MQ=255)
                               ccaACTGGAGAAATTTGAAGAAGCGATTCCTTCAg     >  1:7570409‑M2/4‑35 (MQ=255)
                               ccaACTGGAGAAATTTGAAGAAGCGATTCCTTCAg     <  1:8817181‑M2/32‑1 (MQ=255)
                                caACTGGAGAAATTTGAAGAAGCGATTCCTTCAGc    >  1:18460042‑M2/3‑35 (MQ=255)
                                caACTGGAGAAATTTGAAGAAGCGATTCCTTCAGc    >  1:20036637‑M2/3‑35 (MQ=255)
                                caACTGGAGAAATTTGAAGAAGCGATTCCTTCAGc    >  1:1055468‑M2/3‑35 (MQ=255)
                                caACTGGAGAAATTTGAAGAAGCGATTCCTTCAGc    <  1:4274464‑M2/33‑1 (MQ=255)
                                 aACTGGAGAAATTTGAAGAAGCGATTCCTTCAGcc   >  1:18919102‑M2/2‑35 (MQ=255)
                                 aACTGGAGAAATTTGAAGAAGCGATTCCTTCAGcc   <  1:7791486‑M2/34‑1 (MQ=255)
                                 aACTGGAGAAATTTGAAGAAGCGATTCCTTCAGcc   <  1:280647‑M2/34‑1 (MQ=255)
                                 aACTGGAGAAATTTGAAGAAGCGATTCCTTCAGcc   >  1:16079632‑M2/2‑35 (MQ=255)
                                 aACTGGAGAAATTTGAAGAAGCGATTCCTTCAGcc   >  1:11301926‑M2/2‑35 (MQ=255)
                                  aCTGGAGAAATTTGAAGAAGCGATTCCTTCAGCcg  >  1:3202968/1‑35 (MQ=255)
                                  aCTGGAGAAATTTGAAGAAGCGATTCCTTCAGCcg  >  1:2870215/1‑35 (MQ=255)
                                  aCTGGAGAAATTTGAAGAAGCGATTCCTTCAGCcg  <  1:6809342/35‑1 (MQ=255)
                                  |                                  
CCGTTAAAGACGCAAAAGTAAATTTCGACAGCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCAGCCG  >  REL606/4179294‑4179362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.