New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 5 (0.050) | 5/46 | NT | 5.3% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | = 4415712 | 90 (0.910) | coding (850/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
TCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3894974‑3894996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCAAACGGGCTTTTCTCCGGGACTACCGAACTCCA < REL606/4415712‑4415679 TCCAACTTTTTGGGGTCAGTACACAAACGGGCTTT > 1:16495139/1‑35 CAACTTTTTGGGGTCAGTACACAAACGGGCTTTTC > 1:9363655/1‑35 TTTTTGGGGTCAGTACACAAACGGGCTTTTCTCCG < 1:6231372/35‑1 TGGGGTCAGTACACAAACGGGCTTTTCTCCGGGAC > 1:1372567/1‑35 GTCAGTACACAAACGGGCTTTTCTCCGGGACTACC > 1:2233858/1‑35 AGTACACAAACGGGCTTTTCTCCGGGACTACCGAA > 1:444259/1‑35 AGTACACAAACGGGCTTTTCTCCGGGACTACCGAA > 1:5690821/1‑35 TACACAAACGGGCTTTTCTCCGGGACTACCGAACT > 1:19346761/1‑35 ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA > 1:11569198/1‑35 ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA > 1:12758425/1‑35 ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA > 1:14844629/1‑35 ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA > 1:16015047/1‑35 ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA < 1:554506/35‑1 ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA < 1:6506952/35‑1 ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA > 1:760567/1‑35 TCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3894974‑3894996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCAAACGGGCTTTTCTCCGGGACTACCGAACTCCA < REL606/4415712‑4415679 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |