New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2532852 = | 62 (0.600) | 3 (0.040) | 3/40 | NT | 4.7% | coding (127/2007 nt) | hyfR | DNA‑binding transcriptional activator, formate sensing |
? | REL606 | 4530131 = | 69 (0.810) | coding (410/903 nt) | fimH | minor component of type 1 fimbriae |
TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2532889‑2532852 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC > REL606/4530131‑4530164 nGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGG > 1:8253869/2‑35 TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGG < 1:11448917/35‑1 TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGG < 1:11592706/35‑1 TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGG < 1:11788247/35‑1 TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGG < 1:20168858/35‑1 TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGG > 1:13949463/1‑35 GCAGTTCAATAAGTTGTACCGGGCTGAACGGCGGg > 1:2662817/1‑34 GCAGTTCAATAAGTTGTACCGGGCTGAACGGCGGC < 1:5701079/35‑1 GCAGTTCAATAAGTTGTACCGGGCTGAACGGCGGC < 1:8160841/35‑1 CAGTTCAATAAGTTGTACCGGGCTGAACGGCGGCG < 1:8922800/35‑1 CAGTTCAATAAGTTGTACCGGGCTGAACGGCGGCG > 1:13750556/1‑35 AGTTCAATAAGTTGTACCGGGCTGAACGGCGGGGG > 1:1939768/1‑35 AGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG > 1:16450042/1‑35 AGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG > 1:6114685/1‑35 AGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG < 1:3043629/35‑1 AGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG < 1:18768531/35‑1 AGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG > 1:13338423/1‑35 TTCAATAAGTTGTACCGGGCTGAACGGCGGGGGGg > 1:7744493/1‑34 TTCAATAAGTTGTACCGGGCTGAACGGCGGGGGGa > 1:4892402/1‑34 TTCAATAAGTTGTACCGGGCTGAACGGCGGCGGGg > 1:15850381/1‑34 TTCAATAAGTTGTACCGGGCTGAACGGCGGCGGGg > 1:15367478/1‑34 TTCAATAAGTTGTACCGGGCTGAACGGCGGCGGGC > 1:796138/1‑35 TCAATAAGTTGTACCGGGCTGAACGGCGGCGGGgg > 1:5901981/1‑33 TCAATAAGTTGTACCGGGCTGAACGGCGGCGGGag > 1:6671856/1‑33 AATAAGTTGTACCGGGCTGAACGGCGGCGGGAGGG > 1:11302816/1‑35 ATAAGTTGTACCGGGCTGAACGGCGGCGGGGGGGG > 1:13811607/1‑35 AGTTGTACCGGGCTGAACGGCGGCGGGCGGGGGGG > 1:4744017/1‑35 TGTACCGGGCTGAACGGCGGCGGGCGGGGGGGGGA > 1:8961613/1‑35 GCGGGCGGGGGGGCGATTAAAGCTGGCTCATTAAT < 1:7817126/35‑1 CGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATT > 1:3534207/1‑35 CGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATT < 1:18886377/35‑1 CGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATT < 1:9061370/35‑1 CGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATT < 1:16560927/35‑1 CGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATT > 1:6782857/1‑35 GGGCGGGGGGGCGATTAAAGCTGTCTCATTAATTG > 1:6604039/1‑35 GGGCGGGGGGGCGATTAAAGCTGGCTCATTAATTG < 1:5178215/35‑1 GGGCGGGGGGGCGATTAAAGCTGGCTCATTAATTG < 1:3200481/35‑1 GGGCGGGGGGGCGATTAAAGCTGGCTCATTAATTG > 1:20171663/1‑35 GGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC < 1:6451277/35‑1 GGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC > 1:5574841/1‑35 GGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC < 1:20233775/35‑1 GGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC < 1:17725739/35‑1 GGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC > 1:9214707/1‑35 TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2532889‑2532852 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC > REL606/4530131‑4530164 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |