New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1050924 =43 (0.420)6 (0.070) 4/40 NT 9.8% coding (580/1794 nt) hyaB hydrogenase 1, large subunit
?REL606 1543472 = 75 (0.880)coding (969/1536 nt) xasA predicted glutamate:gamma‑aminobutyric acid antiporter

Only 100 of 103 total aligned reads displayed.

CCGCAATGGCTACTGGGGGCACCCGCAGTACAAACTGCCGCCAGAAGCTAACCTGATGGGCTTTGCCCA  >  REL606/1050890‑1050958
                                   |                                  
ccGCAATGGCTACTGGGGGCACCCGCAGTACAAAc                                    <  1:1765666/35‑1 (MQ=255)
ccGCAATGGCTACTGGGGGCACCCGCAGTACAAAc                                    <  1:10967576/35‑1 (MQ=255)
 ttctcgcgggatgtatgtcacagcgcagaaaaacc                                    <  1:12028257‑M1/1‑1 (MQ=255)
 ttctcgcgggatgtatgtcacagcgcagaaaaacc                                    <  1:5295241‑M1/1‑1 (MQ=255)
 cccAATGGCTACTGGGGGCACCCGCAGTACAAACt                                   <  1:11226266/33‑1 (MQ=255)
 cGCAATGGCTACTGGGGGCACCCGCAGTACAAACt                                   <  1:9816730/35‑1 (MQ=255)
 cGCAATGGCTACTGGGGGCACCCGCAGTACAAACt                                   <  1:19706768/35‑1 (MQ=255)
 cGCAATGGCTACTGGGGGCACCCGCAGTACAAACt                                   <  1:16117566/35‑1 (MQ=255)
 cGCAATGGCTACTGGGGGCACCCGCAGTACAAACt                                   <  1:6990855/35‑1 (MQ=255)
  tctcgcgggatgtatgtcacagcgcagaaaaacCt                                   <  1:3931588‑M1/2‑1 (MQ=255)
  tctcgcgggatgtatgtcacagcgcagaaaaacCt                                   >  1:16178126‑M1/34‑35 (MQ=255)
  tctcgcgggatgtatgtcacagcgcagaaaaacCt                                   <  1:4947865‑M1/2‑1 (MQ=255)
  tctcgcgggatgtatgtcacagcgcagaaaaacCt                                   >  1:4967064‑M1/34‑35 (MQ=255)
  tctcgcgggatgtatgtcacagcgcagaaaaacCt                                   >  1:577641‑M1/34‑35 (MQ=255)
  tctcgcgggatgtatgtcacagcgcagaaaaacCt                                   >  1:6570085‑M1/34‑35 (MQ=255)
  tctcgcgggacgtatgtcacagcgcagaaaaacCt                                   <  1:1893952‑M1/2‑1 (MQ=255)
   ctcgcgggatgtatgtcacagcgcagaaaaacCTg                                  >  1:14054279‑M1/33‑35 (MQ=255)
   ctcgcgggatgtatgtcacagcgcagaaaaacCTg                                  <  1:20433569‑M1/3‑1 (MQ=255)
   ctcgcgggatgtatgtcacagcgcagaaaaacCTg                                  <  1:3357710‑M1/3‑1 (MQ=255)
   ctcgcgggatgtatgtcacagcgcagaaaaacCTg                                  >  1:4176488‑M1/33‑35 (MQ=255)
   ctcgcgggatgtatgtcacagcgcagaaaaacCTg                                  >  1:7340066‑M1/33‑35 (MQ=255)
   cAATGGCTACTGGGGGCACCCGCAGTACAAACTgc                                 <  1:15816263/35‑1 (MQ=255)
    tcgcgggatgtatgtcacagcgcagaaaaacCTgc                                 <  1:50841‑M1/4‑1 (MQ=255)
           aCTGGGGGCACCCGCAGTACAAACTGCCGCCAGaa                         >  1:7568102/1‑35 (MQ=255)
           aCTGGGGGCACCCGCAGTACAAACTGCCGCCAGaa                         >  1:4620649/1‑35 (MQ=255)
           aCTGGGGGCACCCGCAGTACAAACAGACGCCAGaa                         >  1:709798/1‑35 (MQ=25)
            ttGGGGGCACCCGCAGTACAAACTGCCGCCAGAAg                        >  1:15703798/2‑35 (MQ=255)
             tGGGGGCACCCGCAGTACAAACTGCCGCCAGAAGc                       >  1:15808347/1‑35 (MQ=255)
              gggggCACCCGCAGTACAAACTGCCGCCAGAAGCt                      >  1:17987633/1‑35 (MQ=255)
                gggCACCCGCAGTACAACTGCCGCCAGAAGCTAAc                   >  1:11311464/1‑35 (MQ=38)
                gggCACCCGAAGTACAAACTGCAGCCAGAAGCTaa                    <  1:20369054/35‑1 (MQ=38)
                 ggCACCCGCAGTACAAACTGCCGCCAGAAGCTAAc                   >  1:19682525/1‑35 (MQ=255)
                 ggCACCCGCAGTACAAACTGCCGCCAGAAGCTAAc                   >  1:7119356/1‑35 (MQ=255)
                  gCACCCGCAGTACAAACTGCCGCCAGAAGCTAAcc                  >  1:18387331/1‑35 (MQ=255)
                  gCACCCGCAGTACAAACTGCAGCCAGAAGCTAAcc                  <  1:2133922/35‑1 (MQ=255)
                   cccccGAAGTAAAACCTGCCGCCAGAAGCTAACCt                 <  1:19119832/33‑1 (MQ=21)
                    aCCTGCAGTACAAACTGCCGCCAGAAGCTAACCTg                >  1:16682097/1‑35 (MQ=255)
                    aCCCGCAGTACAAACTGCCGCCCGAAGCTAACCTg                >  1:261060/1‑35 (MQ=255)
                    aCCCGCAGTACAAACTGCCGCCCGAAGCTAACCTg                >  1:15010085/1‑35 (MQ=255)
                    aCCCGCAGTACAAACTGCCGCCAGAAGCTAACCTg                >  1:5995201/1‑35 (MQ=255)
                    aCCCGCAGTACAAACTGCCGCCAGAAGCTAACCTg                >  1:10790312/1‑35 (MQ=255)
                    aCCCGCAGTACAAACTGCCGCCAGAAGCTAACCTg                >  1:7625129/1‑35 (MQ=255)
                    aCCCGCAGTACAAACTGCCGCCAGAAGCTAACCTg                >  1:14378335/1‑35 (MQ=255)
                    aCCCGCAGTACAAACTGCCGCCAGAAGCTAACCTg                >  1:1137959/1‑35 (MQ=255)
                     cccGCAGTACAAACTGCCGCCAGAAGCTAACCTGa               >  1:20591091/1‑35 (MQ=255)
                      ccGCAGTACAAACTGCCGCCAGAAGCTAACCTGAt              >  1:7256880/1‑35 (MQ=255)
                       cGCAGTACAAACTGCCGCCAGAAGCTAACCTGATg             >  1:15494812/1‑35 (MQ=255)
                       cGCAGTACAAACTGCCGCCAGAAGCTAACCTGATg             >  1:19856245/1‑35 (MQ=255)
                       cGCAGTACAAACTGCCGCCAGAAGCTAACCTGATg             >  1:10656108/1‑35 (MQ=255)
                        gCAGTACAAACTGCCGCCAGAATCTAACCTGATgg            >  1:14344333/1‑35 (MQ=255)
                        gCAGTACAAACTGCCGCCAGAAGCTAACCTGATgg            >  1:20353245/1‑35 (MQ=255)
                        gCAGTACAAACTGCCGCCAGAAGCTAACCTGATgg            >  1:19414650/1‑35 (MQ=255)
                        gCAGTACAAACTGCCGCCAGAAGCTAACCTGATgg            >  1:19258003/1‑35 (MQ=255)
                        gCAGTACAAACTGCCGCCAGAAGCTAACCTGATgg            >  1:12868678/1‑35 (MQ=255)
                         gcataaaaacCTGCCGCCAGAAGCTAACCTGATgg            >  1:8598559‑M1/11‑35 (MQ=255)
                         cAGTACAAACTGCCGCCAGAAGCTAACCTGATggg           >  1:10714861/1‑35 (MQ=255)
                         cAGTACAAACTGCCGCCAGAAGCTAACCTGATggg           >  1:10963759/1‑35 (MQ=255)
                         cAGTACAAACTGCCGCCAGAAGCTAACCTGATggg           >  1:5174162/1‑35 (MQ=255)
                          aagaaaaacCGGCCGCCAGAAGCTAACCTGATggg           >  1:3673906‑M1/10‑35 (MQ=255)
                          aGTACAAACTGCCGCCAGAAGCTAACCTGATggtc          >  1:14442746/1‑33 (MQ=255)
                          aGTACAAACTGCCGCCAGAAGCTAACCTGATGGGc          >  1:12398272/1‑35 (MQ=255)
                          aGTACAAACTGCCGCCAGAAGCTAACCTGATGGGc          >  1:15288228/1‑35 (MQ=255)
                          aGTACAAACTGCCGCCAGAAGCTAACCTGATGGGc          >  1:1955557/1‑35 (MQ=255)
                           gTACAAACTGCCGCCAGAAGCTAACCTGATGGGCt         >  1:13543903/1‑35 (MQ=255)
                           gTACAAACTGCCGCCAGAAGCTAACCTCATGGGCt         >  1:8325417/1‑35 (MQ=255)
                           atACAAACCTGCCGCCAGAAGCTAACCTGATGGGc          <  1:15756797/34‑1 (MQ=25)
                           agaaaaacCTGCCGCCAGAAGCTAACCTGATGGGc          >  1:1695568‑M1/9‑35 (MQ=255)
                            taaaaacCTGCCGCCAGAAGCTAACCTGATGGGCt         >  1:12317471‑M1/8‑35 (MQ=255)
                            tACAAACTGCCGCCAGAAGCTAACCTGATGGGCtt        >  1:7050930/1‑35 (MQ=255)
                            gaaaaacCTGCCGCCAGAAGCTAACCTGATGGGCt         >  1:2498755‑M1/8‑35 (MQ=255)
                            aaCAACCTGCCGCCAGAAGCTAACCTGATGGGcgt        <  1:1463612/34‑3 (MQ=25)
                             aaaaacCTGCCGCCAGAAGCTAACCTGATGGGCtt        >  1:5579537‑M1/7‑35 (MQ=255)
                             aaaaaATGCCGCCAGAAGCTAACCTGATGGGCttt       <  1:2551140/33‑1 (MQ=38)
                             aCAAACTGCCGCCAGAAGCTAACCTGATGGGCttt       >  1:6412538/1‑35 (MQ=255)
                             aCAAACTGCCGCCAGAAGCTAACCTGATGGGCttt       >  1:148330/1‑35 (MQ=255)
                              cAAACTGCCGCCAGAAGCTAACCTGATGGGCTTTg      >  1:10535864/1‑35 (MQ=255)
                              cAAACTGCCGCCAGAAGCTAACCTGATGGGCTTTg      >  1:4206806/1‑35 (MQ=255)
                              cAAACTGCCGCCAGAAGCTAACCTGATGGGCTTTg      >  1:19951622/1‑35 (MQ=255)
                              cAAACTGCCGCCAGAAGCTAACCTGATGGGCTTTg      >  1:5899955/1‑35 (MQ=255)
                              cAAACTGCCGCCAGAAGCTAACCTGATGGGCTTTg      >  1:18757976/1‑35 (MQ=255)
                              cAAACTGCCGCCAGAAGCTAACCTGATGGGCTTTg      >  1:2037951/1‑35 (MQ=255)
                              acaacCTGCCGCCAGAAGCTAACCTGATGGGCttt       >  1:8452009‑M1/6‑35 (MQ=255)
                              aaaacCTGCCGCCAGAAGCTAACCTGATGGGCttt       >  1:14019352‑M1/6‑35 (MQ=255)
                               aaacCTGCCGCCAGAAGCTAACCTGATGGGCTTTg      >  1:1929828‑M1/5‑35 (MQ=255)
                               aaacCTGCCGCCAGAAGCTAACCTGATGGGCTTTg      >  1:4022043‑M1/5‑35 (MQ=255)
                               aaaCTGCCGCCAGAAGCTAACCTGATGGGCTTTGc     >  1:16381188/1‑35 (MQ=255)
                               aaaCTGCCGCCAGAAGCTAACCTGATGGGCTTTGc     >  1:15766039/1‑35 (MQ=255)
                               aaaCTGCCGCCAGAAGCTAACCTGATGGGCTTTGc     >  1:14903829/1‑35 (MQ=255)
                                aaCTGCCGCCAGAAGCTAACCTGATGGGCTTTGcc    >  1:18313465/1‑35 (MQ=255)
                                aaCTGCCGCCAGAAGCTAACCTGATGGGCTTTGcc    >  1:5997021/1‑35 (MQ=255)
                                aaCTGCCGCCAGAAGCTAACCTGATGGGCTTTGcc    >  1:12083906/1‑35 (MQ=255)
                                 acCTGCCGCCAGAAGCTAACCTGATGGGCTttgac    >  1:18608517‑M1/3‑33 (MQ=255)
                                 acCTCCCGCCAGAAGCTAACCTGATGGGCTTTGcc    >  1:1977307‑M1/3‑35 (MQ=255)
                                 aCTGCCGCCAGAAGCTAACCTGATGGGCTTTTccc   >  1:18949899/1‑35 (MQ=255)
                                 aCTGCCGCCAGAAGCTAACCTGATGGGCTTTGccc   >  1:6366941/1‑35 (MQ=255)
                                 aCTGCCGCCAGAAGCTAACCTGATGGGCTTTGccc   >  1:16895369/1‑35 (MQ=255)
                                 aCTGCCGCCAGAAGCTAACCTGATGGGCTTTGccc   >  1:14377433/1‑35 (MQ=255)
                                  cCTCCCGCCAGAAGCTAACCTGATGGGCTTTGccc   >  1:8813202‑M1/2‑35 (MQ=255)
                                   CTGCCGCCAGAAGCTAACCTTATGGGCTTTGCCCa  <  1:16700321‑M1/35‑1 (MQ=255)
                                   CTGCCGCCAGAAGCTAACCTGATGGGCTTTGCCCa  >  1:5641613‑M1/1‑35 (MQ=255)
                                   |                                  
CCGCAATGGCTACTGGGGGCACCCGCAGTACAAACTGCCGCCAGAAGCTAACCTGATGGGCTTTGCCCA  >  REL606/1050890‑1050958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.