New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2487179 =54 (0.530)11 (0.170) 3/30 NT 21.0% coding (435/1404 nt) eutA reactivating factor for ethanolamine ammonia lyase
?REL606 = 3686151 49 (0.760)coding (411/741 nt) yiaT hypothetical protein

Only 100 of 102 total aligned reads displayed.

TGCCACCGCCGATGTCGATATTCAGTACCCGACACAGCCGTTGTTCAGAAAGGGTTTGTGCCCCGGCTC  >  REL606/2487145‑2487213
                                  |                                  
tGCCACCGCCGATGTCGATATTCAGTACCCGacac                                    >  1:2946372/1‑35 (MQ=255)
tGCCACCGCCGATGTCGATATTCAGGACCCGacac                                    >  1:17810280/1‑35 (MQ=255)
 gCCACCGCCGATGTCGATATTCAGTACCCGAcaca                                   >  1:8701872/1‑35 (MQ=255)
 gCCACCGCCGATGTCGATATTCAGTACCCGAcaca                                   >  1:4981028/1‑35 (MQ=255)
 gCCACCGCCGATGTCGATATTCAGGAACCGAccca                                   >  1:19899720/1‑35 (MQ=25)
  cccccgccgATGTCGATATTCAGTACCCGACACAg                                  <  1:18591198/32‑1 (MQ=255)
  ccACCGCCGATGTCGATATTCAGTACCCGACACAg                                  >  1:2148957/1‑35 (MQ=255)
  ccACCGCCGATGTCGATATTCAGTACCCGACACAg                                  >  1:9188731/1‑35 (MQ=255)
   cACCGCCGATGTCGATATTCAGTACCCGACACAGc                                 >  1:17316971/1‑35 (MQ=255)
   cACCGCCGATGTCGATATTCAGTACCCGACACAGc                                 >  1:6212024/1‑35 (MQ=255)
   cACCGCCGATGTCGATATTCAGTACCCGACACAGc                                 >  1:2096995/1‑35 (MQ=255)
    aCCGCCGATGTCGATATTCAGTACCCGACACCGcc                                >  1:14721965/1‑35 (MQ=255)
    aCCGCCGATGTCGATATTCAGTACCCGACACAGcc                                >  1:12413437/1‑35 (MQ=255)
    aCCGCCGATGTCGATATTCAGTACCCGACACAGcc                                >  1:3612152/1‑35 (MQ=255)
    aCCGCCGATGTCGATATTCAGTACCCGACACAGcc                                >  1:16082457/1‑35 (MQ=255)
      cgccgATGTCGATATTCAGTACCCGACACAGCCgt                              >  1:8561841/1‑35 (MQ=255)
       gccgATGTCGATATTCAGTACCCGACACNNCCgnn                             >  1:17529315/1‑35 (MQ=255)
       gccgATGTCGATATTCAGTACCCGACACAGCCgtt                             >  1:2924925/1‑35 (MQ=255)
        ccgATGTCGATATTCAGTACCCGACACAGGCggtg                            >  1:12062968/1‑35 (MQ=37)
        ccgATGTCGATATTCAGTACCCGACACAGCCgttg                            >  1:3234419/1‑35 (MQ=255)
        ccgATGTCGATATTCAGTACCCGACACAGCCgctg                            >  1:18467716/1‑35 (MQ=255)
         cgATGTCGATATTCAGTACCCGACACAGCCgttgt                           >  1:4127992/1‑35 (MQ=255)
         cgATGTCGATATTCAGTACCCGACACAGCCgttgg                           >  1:3116459/1‑34 (MQ=255)
         cgATGTCGATATTCAGTACCCGACACAGCCggtgt                           >  1:1174262/1‑35 (MQ=255)
          gATGTCGATATTCAGTACCCGACACAGCCggtgtt                          >  1:7470908/1‑35 (MQ=255)
          gATGTCGATATTCAGTACCCGACACAGCCggtggt                          >  1:15414210/1‑33 (MQ=37)
           aTGTCGATATTCAGTACCCGACACAGCCgttgttt                         >  1:20458975/1‑34 (MQ=255)
           aTGTCGATATTCAGTACCCGACACAGCCgttggtt                         >  1:2801810/1‑32 (MQ=255)
           aTGTCGATATTCAGTACCCGACACAGCCGTTGTTc                         >  1:15243422/1‑35 (MQ=255)
           aTGTCGATATTCAGTACCCGACACAGCCGTTGTTc                         >  1:3283616/1‑35 (MQ=255)
           aTGTCGATATTCAGTACCCGACACAGCCGTTGTTc                         >  1:18098209/1‑35 (MQ=255)
            tGTCGATATTCAGTACCCGACACAGCCgttgttta                        >  1:16929180/1‑33 (MQ=255)
            tGTCGATATTCAGTACCCGACACAGCCGTTGTTct                        >  1:9041499/1‑34 (MQ=255)
            tGTCGATATTCAGTACCCGACACAGCCGTTGTTCa                        >  1:9386152/1‑35 (MQ=255)
             gTCGATATTCAGTACCCGACACAGCCGTTGTTccg                       >  1:7946628/1‑33 (MQ=255)
             gTCGATATTCAGTACCCGACACAGCCGTTGTTCAg                       >  1:4031770/1‑35 (MQ=255)
              tCGATATTCAGTACCCGACACAGCCGTTGGTCAGa                      >  1:20506372/1‑35 (MQ=255)
               cGATATTCAGTACCCGACACAGCCGTTGTTCAGaa                     >  1:11208057/1‑35 (MQ=255)
               cGATATTCAGTACCCGACACAGCCGTTGTTCAGaa                     >  1:12271145/1‑35 (MQ=255)
                gATATTCAGTACCCGACACAGCCGTTGTTCAGaaa                    >  1:12379399/1‑35 (MQ=255)
                 atatTCAGTACCCGACACAGCCGTTGTTCAGAAAg                   >  1:823972/1‑35 (MQ=255)
                  tatTCAGTACCCGACACAGCCGTTGTTCAGAAAgg                  >  1:14830052/1‑35 (MQ=255)
                  tatTCAGTACCCGACACAGCCGTTGGTCCGCAAgg                  >  1:12265649/1‑35 (MQ=25)
                   atTCAGTACCCGACACAGCCGTTGTTCCGAAAggg                 >  1:666168/1‑35 (MQ=255)
                   atTCAGTACCCGACACAGCCGTTGTTCAGAAAggg                 >  1:1463039/1‑35 (MQ=255)
                   atTCAGTACCCGACACAGCCGTTGTTCAGAAAggg                 >  1:16526103/1‑35 (MQ=255)
                   atTCAGTACCCGACACAGCCGTTGTTCAGAAAggg                 >  1:7464575/1‑35 (MQ=255)
                   atTCAGTACCCGACACAGCCGTTGTTCAGAAAggg                 >  1:8072792/1‑35 (MQ=255)
                    ttCAGTACCCGACACAGCCGTTGTTCAGAAAgggg                >  1:17149585/1‑34 (MQ=255)
                    ttCAGTACCCGACACAGCCGTTGTTCAGAAAGGGt                >  1:15791857/1‑35 (MQ=255)
                    ttCAGTACCCGACACAGCCGTTGTTCAGAAAGGGt                >  1:13468466/1‑35 (MQ=255)
                     tCAGTACCCGACACAGCCGTTGTTCAGAAAGGGtt               >  1:12531462/1‑35 (MQ=255)
                      cAGTACCCGACACAGCCGTTGTTCAGAAAGGGttt              >  1:4736274/1‑35 (MQ=255)
                       aGTACCCGACACAGCCGTTGTTCAGAAAGGGTTtg             >  1:20558303/1‑35 (MQ=255)
                       aGTACCCGACACAGCCGTTGTTCAGAAAGGGTTtg             >  1:15125634/1‑35 (MQ=255)
                       aGTACCCGACACAGCCGTTGTTCAGAAAGGGTTtg             >  1:6959561/1‑35 (MQ=255)
                       aGTACCCGACACAGCCGTTGTTCAGAAAGGGTTtg             >  1:4458777/1‑35 (MQ=255)
                       aGTACCCGACACAGCCGTTGTTCAGAAAGGGTTtg             >  1:10734355/1‑35 (MQ=255)
                        gTACCCGACACAGCCGTTGTTCAGAAAGGGTTtgt            >  1:7483238/1‑35 (MQ=255)
                        gTACCCGACACAGCCGTTGTTCAGAAAGGGGTtgt            >  1:8171404/1‑35 (MQ=255)
                         tACCCGACACAGCCGTTGTTCAGAAAGGGTTtgtg           >  1:16915928/1‑35 (MQ=255)
                         cccccccccCAGCCGTTGTTCAGAAAGGGTTtgtg           >  1:20590733‑M1/10‑35 (MQ=255)
                          ccccccccCAGCCGTTGTTCAGAAAGGGTTTGTGc          >  1:4497900‑M1/9‑35 (MQ=255)
                          aCCCGACACATCCGTTGTTCAGAAAGGGTTTGTGc          >  1:17813966/1‑35 (MQ=255)
                          aCCCGACACAGCCGTTGTTCAGAAAGGGTTTGTGc          >  1:16027048/1‑35 (MQ=255)
                          aCCCGACACAGCCGTTGTTCAGAAAGGGTTTGTGc          >  1:16965172/1‑35 (MQ=255)
                          aCCCGACACAGCCGTTGTTCAGAAAGGGTTTGTGc          >  1:11130621/1‑35 (MQ=255)
                          aCCCGACACAGCCGTTGTTCAGAAAGGGTTTGTGc          >  1:10532099/1‑35 (MQ=255)
                           cccccccCAGCCGTTGTTCAGAAAGGGTTTGTgct         >  1:8729375‑M1/8‑34 (MQ=255)
                           cccccccCAGCCGTTGTTCAGAAAGGGTTTGTGcc         >  1:9748943‑M1/8‑35 (MQ=255)
                           cccccccCAGCCGTTGTTCAGAAAGGGTTTGTGcc         >  1:16069554‑M1/8‑35 (MQ=255)
                           cccccccCAGCCGTTGTTCAGAAAGGGTTTGTGcc         >  1:20502936‑M1/8‑35 (MQ=255)
                            ccccccCAGCCGTTGTTCAGAAAGGGTTTGTGccc        >  1:2098977‑M1/7‑35 (MQ=255)
                            ccccccCAGCCGTTGTTCAGAAAGGGTTTGTGccc        >  1:4808518‑M1/7‑35 (MQ=255)
                            ccccccCAGCCGTTGTTCAGAAAGGGTTTGTGccc        >  1:6588584‑M1/7‑35 (MQ=255)
                            ccccccCAGCCGTTGTTCAGAAAGGGTTTGTGccc        >  1:17169232‑M1/7‑35 (MQ=255)
                            ccGACACAGCCGTTGTTCAGAAAGGGTTTGTGccc        >  1:15593934/1‑35 (MQ=255)
                            ccGACACAGCCGTTGTTCAGAAAGGGTTTGTGccc        >  1:17109588/1‑35 (MQ=255)
                             cccccCAGCCGTTGTTCAGAAAGGGTTTGTGcccc       >  1:10265387‑M1/6‑35 (MQ=255)
                             cccccCAGCCGTTGTTCAGAAAGGGTTTGTGcccc       >  1:9670430‑M1/6‑35 (MQ=255)
                             cccccCAGCCGTTGTTCAGAAAGGGTTTGTGcccc       >  1:16632978‑M1/6‑35 (MQ=255)
                              gcccCAGCCGTTGTTCAGAAAGGGTTTGTGCCCCg      >  1:19041557‑M1/5‑35 (MQ=255)
                              gACACAGCCGTTGTTCAGAAAGGGTTTGTGCCCCg      >  1:2221715/1‑35 (MQ=255)
                              gACACAGCCGTTGTTCAGAAAGGGTTTGTGCCCCg      >  1:19199535/1‑35 (MQ=255)
                              ccccCAGCCGTTGTTCAGAAAGGGTTTGTGCCCCg      >  1:8993166‑M1/5‑35 (MQ=255)
                              ccccCAGCCGTTGTTCAGAAAGGGTTTGTGCCCCg      >  1:17844280‑M1/5‑35 (MQ=255)
                              ccccCAGCCGTTGTTCAGAAAGGGTTTGTGCCCCg      >  1:18823806‑M1/5‑35 (MQ=255)
                              ccccCAGCCGTTGTTCAGAAAGGGTTTGTGCCCCg      >  1:2953027‑M1/5‑35 (MQ=255)
                               cccCAGCCGTTGTTCAGAAAGGGTTTGTGCCCCgg     >  1:1819782‑M1/4‑35 (MQ=255)
                               acacAGCCGTTGTTCAGAAAGGGTTTGTGCCCCgg     >  1:5424350/1‑35 (MQ=255)
                               acacAGCCGTTGTTCAGAAAGGGTTTGTGCCCCgg     >  1:11995395/1‑35 (MQ=255)
                                ccCAGCCGTTGTTCAGAAAGGGTTTGTGCCCCGGc    >  1:18446569‑M1/3‑35 (MQ=255)
                                ccCAGCCGTTGTTCAGAAAGGGTTTGTGCCCCGGc    >  1:7209281‑M1/3‑35 (MQ=255)
                                ccCAGCCGTTGTTCAGAAAGGGTTTGTGCCCCGGc    >  1:317262‑M1/3‑35 (MQ=255)
                                cacaGCCGTTGTTCAGAAAGGGTTTGTGCCCCGGc    >  1:13220623/1‑35 (MQ=255)
                                 cCAGCCGTTGTTCAGAAAGGGTTTGTGCCCCGGCt   >  1:20554898‑M1/2‑35 (MQ=255)
                                 acaGCCGTTGTTCAGAAAGGGTTTGTGGCCCGGCt   >  1:421393/1‑35 (MQ=255)
                                  CAGCCGTTGTTCAGAAAGGGTTTGTGCCCCGGCTc  >  1:7348086‑M1/1‑35 (MQ=255)
                                  CAGCCGTTGTTCAGAAAGGGTTTGTGCCCCGGCTc  <  1:16838402‑M1/35‑1 (MQ=255)
                                  CAGCCGTTGTTCAGAAAGGGTTTGTGCCCCGGCTc  >  1:191769‑M1/1‑35 (MQ=255)
                                  |                                  
TGCCACCGCCGATGTCGATATTCAGTACCCGACACAGCCGTTGTTCAGAAAGGGTTTGTGCCCCGGCTC  >  REL606/2487145‑2487213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.