New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 411751 =19 (0.180)8 (0.080) 3/44 NT 12.3% coding (313/591 nt) thiJ hypothetical protein
?REL606 = 1138232 97 (1.030)coding (395/648 nt) grxB glutaredoxin 2 (Grx2)

AACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/411786‑411751
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT  <  REL606/1138232‑1138199
                                                                      
AACAGTTCCACCGTTCCGGTCGTATCGTCGCGGCT                                     >  1:1440804/1‑35
AACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCT                                     <  1:13615551/35‑1
AACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCT                                     >  1:15459602/1‑35
AACAGTCCCACCGTTCCGGGCGTATCGTCGCGGCT                                     <  1:4004039/35‑1
 ACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTc                                    >  1:11893493/1‑34
 ACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTA                                    >  1:5247114/1‑35
 ACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTA                                    >  1:16660168/1‑35
 ACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTA                                    <  1:18070390/35‑1
 ACAGTGCCACCGTTCCGGGCGTATCGTCGCGGCTA                                    <  1:4238296/35‑1
  CAGTTCCACCGTTCCTGGCGTATCGTCGCGGCTAA                                   >  1:17439896/1‑35
   AGTTCCACCGTTCCGGGCGTATCGTCGCGGCTAAa                                  >  1:10236124/1‑34
   AGTTCCACCGTTCCGGGCGTATCGTCGCGGCTAAa                                  >  1:875189/1‑34
   AGTTCCACCGTTCCGGGCGTATCGTCGCGGCTAAT                                  >  1:9558335/1‑35
   AGTTCCACCGTTCCGGGCGTATCGTCGCGGCTAAT                                  >  1:2958818/1‑35
   AGTTCCACCGTTCCGGGCGTATCGTCGCGGCTAAT                                  >  1:10396159/1‑35
    GTTCCACCGTTCCGGGCGTATCGTCGCGGCTAAat                                 >  1:13311324/1‑33
    GTTCCACCGTTCCGGGCGTATCGTCGCGGCTAATT                                 >  1:12676024/1‑35
    GTTCCACCGTTCCGGGCGTATCGTCGCGGCTAATT                                 >  1:3233185/1‑35
     TTCCACCGTTCCGGGCGTATCGTCGCGGCTAATTT                                >  1:11059888/1‑35
     TTCCACCGTTCCGGGCGTATCGTCGCGGCTAATTT                                >  1:5716611/1‑35
      TCCACCGTTCCGGGCGTATCGTCGCGGCTAATTTT                               >  1:8080771/1‑35
        CACCGTTCCGGGCGTATCGTCGCGGCTAATTTTGt                             >  1:17698701/1‑34
        CACCGTTCCGGGCGTATCGTCGCGGCTAATTGTGC                             >  1:6535422/1‑35
         ACCGTTCCGGGCGTATCGTCGCGGCTAATTTTGCC                            >  1:3610130/1‑35
         ACCGTTCCGGGCGTATCGTCGCGGCTAATTTCGCC                            >  1:15156006/1‑35
         ACCGTTCCGGGCGTATCGTCGCGGCTAAATTTGCC                            >  1:20469088/1‑35
          CCGTTCCGGGCGTATCGTCGCGGCTAATTTTGCCG                           >  1:6307786/1‑35
           CGTTCCGGGCGTATCGTCGCGGCTAATTTCGCCGc                          >  1:3806041/1‑34
            GTTCCGGGCGTATCGTCGCGGCTAATTTTGCCccg                         >  1:1830325/1‑32
                                  TAATTTTGCCGACCTGCTGGCCCACTCTGACGGTC   >  1:9402505/1‑35
                                  TAATTTTGCCGACCTGCTGGCCCACTCTGACGGTC   <  1:6843817/35‑1
                                  TAATTTTGCCGACCTGCTGGCCCACTCTGACGGTC   >  1:16046240/1‑35
                                   AATTTTGCGGACCTGCTGGCCCACTCTGACGGTCT  <  1:16852742/35‑1
                                   AATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT  <  1:18798501/35‑1
                                   AATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT  >  1:19423722/1‑35
                                   AATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT  >  1:7436980/1‑35
                                   AATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT  <  1:20121274/35‑1
                                   AATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT  <  1:3495012/35‑1
                                                                      
AACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/411786‑411751
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT  <  REL606/1138232‑1138199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.