Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 547,700 | Δ2,651 bp | 100% | IS1‑mediated | [nmpC]–[ybcU] | [nmpC], ybcR, ybcS, ybcT, [ybcU] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 546953–547700 | 550350 | 2651–3398 | 55 [48] | [7] 94 | [insB‑6]–[ybcU] | [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, [ybcU] |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 547699 | NA (NA) | 59 (0.570) | 34/48 | NT | 93.7% | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 550351 = | 4 (0.040) | coding (12/294 nt) | ybcU | predicted lipoprotein |
CATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/547667‑547699 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATTTTTTTCATCTTATTATCCTGCATTGTTAA > REL606/550351‑550383 CATACACTAAATCAGTAAGTTGGCAGCATCACCCA < 1:670116/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCA > 1:10609978/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCCA < 1:561119/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCA < 1:4511867/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCA > 1:3799628/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCCA < 1:11746488/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCA > 1:3034328/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCCA > 1:2683632/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCCA < 1:20218424/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCA < 1:19090544/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCA < 1:16639672/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCA < 1:14457173/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCA < 1:14389154/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACACA < 1:9220841/35‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCCAT > 1:19336272/1‑35 ATACACTAAATCAGTAAGTTGGCAGCATCACCCAT > 1:6999817/1‑35 TACACTAAATCAGTAAGTTGGCAGCATCACCCATg > 1:7082398/1‑34 TACACTAAATCAGTAAGTTGGCAGCATCACCCATT > 1:4200401/1‑35 TACACTAAATCAGTAAGTTGGCAGCATCACCCATT < 1:7148470/35‑1 TACACTAAATCAGTAAGTTGGCAGCATCACCCATT < 1:6522136/35‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCCATTT < 1:477804/35‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCCATTT < 1:10049345/35‑1 CACTAAATCAGTAAGTTGGCAGCATCACCCATTTT < 1:9063694/35‑1 CACTAAATCAGTAAGTTGGCAGCATCACCCATTTT > 1:2350079/1‑35 CACTAAATCAGTAAGTTGGCAGCATCACCCATTTT < 1:17801198/35‑1 CTAAATCAGTAAGTTGGCAGCATCACCCATTTTTT < 1:11218900/35‑1 CTAAATCAGTAAGTTGGCAGCATCACCCATTTTTT > 1:6648175/1‑35 TAAATCAGTAAGTTGGCAGCATCAGCCATTTTTTT < 1:15599576/35‑1 TAAATCAGTAAGTTGGCAGCATCACCCATTTTTTT < 1:5470538/35‑1 TAAATCAGTAAGTTGGCAGCATCACCCATTTTTTT < 1:18708835/35‑1 AAATCAGTAAGTTGGCAGCATCACCCATTTTTTTC > 1:20396147/1‑35 AAATCAGTAAGTTGGCAGCATCACCCATTTTTTTC > 1:12602237/1‑35 AATCAGTAAGTTGGCAGCATCACCCATTTTTTTCA > 1:12250178/1‑35 AATCAGTAAGTTGGCAGCATCACCAATTTTTTTCA < 1:12836556/35‑1 ATCAGTAAGTTGGCAGCATCACCCATTTTTTTCAT < 1:1104505/35‑1 ATCAGTAAGTTGGCAGCATCACCCATTTTTTTCAT > 1:18133760/1‑35 ATCAGTAAGTTGGCAGCATCACCCATTTTTTTCAT < 1:1432407/35‑1 TCAGTAAGTTGGCAGCATCACCCATTTTTTTCATC > 1:4044685/1‑35 TCAGTAAGTTGGCAGCATCACCCATTTTTTTCATC < 1:4882655/35‑1 TCAGTAAGTTGGCAGCATCACCCATTTTTTTCATC > 1:18967033/1‑35 TCAGTAAGTTGGCAGCATCACCCATTTTTTTCATC > 1:10598480/1‑35 TCAGTAAGTTGGCAGCATCACCCATTTTTTTCATC > 1:6910058/1‑35 CAGTAAGTTGGCAGCATCACCCATTTTTTTCATCT < 1:19044861/35‑1 CAGTAAGTTGGCAGCATCACCCATTTTTTTCATCT < 1:653772/35‑1 CAGTAAGTTGGCAGCATAACCCATTTTTTTCATCT < 1:6249004/35‑1 AGTAAGTTTGCAGCATCACCCATTTTTTTCATCTT > 1:1699091/1‑35 AGTAAGTTGGCAGCATCACCCATTTTTTTCATCTT < 1:12901107/35‑1 TAAGTTGGCAGCATCACCCATTTTTTTCATCTTAT > 1:13470782/1‑35 TAAGTTGGCAGCATAACCCATTTTTTTCATCTTAT < 1:8056764/35‑1 AAGTTGGCAGCATCACCCATTTTTTTCATCTTATT > 1:1398461/1‑35 AAGTTGGCAGCATCACCCATTTTTTTCATCTTATT < 1:3673967/35‑1 AAGTTGGCAGCATCACCCATTTTTTTCATCTTATT > 1:2861219/1‑35 AGTTGGCAGCATCACCCATTTTTTTCATCTTATTA > 1:6748301/1‑35 AGTTGGCAGCATCACCCATTTTTTTCATCTTATTA > 1:6731446/1‑35 AGTTGGCAGCATCACCCATTTTTTTCATCTTATTA > 1:2798034/1‑35 GTTGGCAGCATCACCCATTTTTTTCATCTTATTAT > 1:14832810/1‑35 GTTGGCAGCATCACCCATTTTTTTCATCTTATTAT < 1:6050896/35‑1 GTTGGCAGCATCACCCATTTTTTTCATCTTATTAT < 1:3845981/35‑1 TGGCAGCATCACCCATTTTTTTCATCTTATTATCC > 1:2571021/1‑35 TGGCAGCATCACCCATTTTTTTCATCTTATTATCC < 1:18849183/35‑1 GGCAGCATCACCCATTTTTTTCATCTTATTATCCT < 1:803152/35‑1 GGCAGCATCACCCATTTTTTTCATCTTATTATCCT > 1:14876006/1‑35 GGCAGCATCACCCATTTTTTTCATCTTATTATCCT < 1:20201317/35‑1 GGCAGCATCACCCATTTTTTTCATCTTATTATCCT > 1:4022064/1‑35 GCAGCATCACCCATTTTTTTCATCTTATTATCCTG > 1:14404573/1‑35 GCAGCATCACCCATTTTTTTCATCTTATTATCCTG < 1:3733042/35‑1 GCAGCATCACCCATTTTTTTCATCTTATTATCCTG > 1:15302191/1‑35 GCAGCATCACCCATTTTTTTCATCTTATTATCCTG < 1:18509552/35‑1 CAGCATCACCCATTTTTTTCATCTTATTATCCTGC > 1:8293703/1‑35 CAGCATCACCCATTTTTTTCATCTTATTATCCTGC < 1:7342326/35‑1 CAGCATCACCAATTTTTTTCATCTTATTATCCTGC < 1:741897/35‑1 AGCATCACCCATTTTTTTCATCTTATTATCCTGCA > 1:5623083/1‑35 AGCATCACCCATTTTTTTCATCTTATTATCCTGCA > 1:5563768/1‑35 CATCACCCATTTTTTTCATCTTATTATCCTGCATT < 1:4314625/35‑1 CATCACCCATTTTTTTCATCTTATTATCCTGCATT < 1:15149477/35‑1 CATCACCCATTTTTTTCATCTTATTATCCTGCATT < 1:3420287/35‑1 CATCACCCATTTTTTTCATCTTATTATCCTGCATT > 1:1258776/1‑35 CATCACCCATTTTTTTCATCTTATTATCCTGCATT < 1:13213322/35‑1 CATCACCCATTTTTTTCATCTTATTATCCTGCATT < 1:7238959/35‑1 catACCCATTTTTTTCATCTTATTATCCTGCATTG < 1:465853/32‑1 ATCACCCATTTTTTTCATCTTATTATCCTGCATTG < 1:12131796/35‑1 ATCACCCATTTTTTTCATCTTATTATCCTGCATTG < 1:2245245/35‑1 TCACGCATTTTTTTCATCTTATTATCCTGCATTGT > 1:14960340/1‑35 CACCCATTTTTTTCATCTTATTATCCTGCATTGTT < 1:5612833/35‑1 CCCATTTTTTTCATCTTATTATCCTGCATTGTTAA < 1:2873911/35‑1 CCCATTTTTTTCATCTTATTATCCTGCATTGTTAA < 1:10867519/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/547667‑547699 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATTTTTTTCATCTTATTATCCTGCATTGTTAA > REL606/550351‑550383 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |