New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 370831 =66 (0.640)3 (0.050) 3/28 NT 8.4% intergenic (+23/‑96) phoA/psiF bacterial alkaline phosphatase/hypothetical protein
?REL606 4533970 = 27 (0.450)coding (156/1461 nt) uxuB D‑mannonate oxidoreductase, NAD‑binding

Only 100 of 170 total aligned reads displayed.

GGGCTGAAATAAAACCGCGCCCGGCGGTGAATTTTCGCTGTCGGGTGGTTTTTTTGCTGTTAGCAACCA  >  REL606/370797‑370865
                                   |                                  
gggCTGAAATAAAACCGCGCCCGGCGGTGAAtttt                                    <  1:13311781/35‑1 (MQ=255)
gggCTGAAATAAAACCGCGCCCGGCGGTGAAtttt                                    <  1:7124521/35‑1 (MQ=255)
 ggCTGAAATAAAACCGCGCCCGGCGGGGGAAtttt                                    >  1:1696982/1‑35 (MQ=25)
 ggCTGAAATAAAACCGCGCCCGGCGGTGAATTTTc                                   <  1:8917461/35‑1 (MQ=255)
 ggCTGAAACAAAACCGCGCCCGGCGGGGGAttttt                                   >  1:5806747/1‑34 (MQ=21)
 gcctggcatcaggttaacttcgcagatgccccagt                                    >  1:5373693‑M1/35‑35 (MQ=255)
 gcctggcatcaggttaacttcgcagatgccccagt                                    >  1:11900254‑M1/35‑35 (MQ=255)
 gcctggcatcaggttaacttcgcagatgccccagt                                    >  1:9586683‑M1/35‑35 (MQ=255)
 gcctggcatcaggttaacttcgcagatgccccagt                                    <  1:11161269‑M1/1‑1 (MQ=255)
 gcctggcatcaggttaacttcgcagatgccccagt                                    >  1:6832221‑M1/35‑35 (MQ=255)
  gCTGAAATAAAACCGCGCCCGGCGGTGAATTTTCg                                  <  1:195047/35‑1 (MQ=255)
  gCTGAAATAAAACCGCGCCCGGCGGGGGAtttttg                                  >  1:1346467/1‑33 (MQ=25)
  cctggcatcaggttaacttcgcagatgccccagTc                                   >  1:116778‑M1/34‑35 (MQ=255)
  cctggcatcaggttaacttcgcagatgccccagTc                                   <  1:17902915‑M1/2‑1 (MQ=255)
   ctggcatcaggttaacttcgcagatgccccagTCg                                  <  1:16794470‑M1/3‑1 (MQ=255)
   ctggcatcaggttaacttcgcagatgccccagTCg                                  <  1:5519072‑M1/3‑1 (MQ=255)
   ctggcatcacgttaacttcgcagatgccccagTCg                                  <  1:5096554‑M1/3‑1 (MQ=255)
   cTGAAATAAAACCGCGCCCGGCGGTGAATTTTCGc                                 <  1:14685252/35‑1 (MQ=255)
   cTGAAATAAAACCGCGCCCGGCGGGGGATTTTTGc                                 >  1:2403670/1‑35 (MQ=25)
    tggcatcaggttaacttcgcagatgccccagTCGc                                 >  1:20208747‑M1/32‑35 (MQ=255)
    tggcatcaggttaacttcgcagatgccccagTCGc                                 <  1:19236408‑M1/4‑1 (MQ=255)
    tGAAATAAAACCGCGCCCGGCGGGGAATTTTCgta                                >  1:4743333/1‑33 (MQ=37)
    tGAAATAAAAACGCGCCCGGCGGTGAATTTTCGCt                                <  1:3374995/35‑1 (MQ=255)
     ggcatcaggttaacttcgcagatgccccagTCGCt                                >  1:2843641‑M1/31‑35 (MQ=255)
     ggcatcaggttaacttcgcagatgccccagTCGCt                                >  1:16682704‑M1/31‑35 (MQ=255)
     ggcatcaggttaacttcgcagatgccccagTCGCt                                >  1:14308570‑M1/31‑35 (MQ=255)
     ggcatcaggttaacttcgcagatgccccagTCGCt                                >  1:11755400‑M1/31‑35 (MQ=255)
     gAAATAAAACCGCGCCCGGCGGTGAATTTTCGCTg                               <  1:12657195/35‑1 (MQ=255)
      gcatcaggttaacttcgcagatgccccagTCGCTg                               <  1:6167700‑M1/6‑1 (MQ=255)
      gcatcaggttaacttcgcagatgccccagTCGCTg                               <  1:10113770‑M1/6‑1 (MQ=255)
      gcatcaggttaacttcgcagatgccccagTCGCTg                               >  1:10964908‑M1/30‑35 (MQ=255)
      gcatcaggtcaacttcgcagatgccccagTCGCTg                               >  1:17194130‑M1/30‑35 (MQ=255)
      aaaTAAAACCGCGCCCGGCGGTGAATTTTCGCTGt                              <  1:4105121/35‑1 (MQ=255)
      aaaTAAAACCGCGCCCGGCGGTGAATTTTCGCTGt                              <  1:20391907/35‑1 (MQ=255)
      aaaTAAAACCGCGCCCGGCGGTGAATTTTCGCTGt                              <  1:911676/35‑1 (MQ=255)
      aaaTAAAACCGCGCCCGGCGGGGGATTTTTGCTGt                              >  1:10821754/1‑35 (MQ=25)
       catcaggttaacttcgcagatgccccagTCGCTGt                              >  1:18577186‑M1/29‑35 (MQ=255)
        atcaggttaacttcgcagatgccccagTCGCTGTc                             <  1:19483399‑M1/8‑1 (MQ=255)
        atcaggttaacttcgcagatgccccagTCGCTGTc                             <  1:6979392‑M1/8‑1 (MQ=255)
        aTAAAACCGCGCCCGGCGGTGAATTTTCGCTGTCg                            <  1:14855342/35‑1 (MQ=255)
        aTAAAACCGCGCCCGGCGGTGAATTTTCGCTGTCg                            <  1:14232128/35‑1 (MQ=255)
        aTAAAACCGCGCCCGGCGGTGAATTTTCGCTGTCg                            <  1:12935366/35‑1 (MQ=255)
        aTAAAACCGCGCCCGGCGGTGAATTTTCGCTATCg                            <  1:5445981/35‑1 (MQ=255)
         tcaggttaacttcgcagatgccccagTCGCTGTCg                            >  1:9629643‑M1/27‑35 (MQ=255)
         tcaggttaacttcgcagatgccccagTCGCTGTCg                            >  1:10462819‑M1/27‑35 (MQ=255)
         tcaggttaacttcgcagatgccccagTCGCTGTCg                            >  1:8737902‑M1/27‑35 (MQ=255)
         tcaggttaacttcgcagatgccccagTCGCTGTCg                            <  1:9071574‑M1/9‑1 (MQ=255)
         tAAAACCGCGCCCGGCGGGGAATTTTTGCTGTCgg                           >  1:222630/1‑35 (MQ=37)
          caggttaacttcgcagatgccccagTCGCTgtctg                           <  1:7887687‑M1/10‑3 (MQ=255)
          caggttaacttcgcagatgccccagTCGCTGTCgg                           <  1:13641741‑M1/10‑1 (MQ=255)
          caggttaacttcgcagatgccccagTCGCTGGCgg                           <  1:2040954‑M1/10‑1 (MQ=255)
           agattaacttcgcagatgccccagTCGCTGTCggg                          <  1:4076519‑M1/11‑1 (MQ=255)
           aacccGCGCCCGGCGGTGAATTTTCGCTGTCGggt                         <  1:12257399/32‑1 (MQ=255)
           aaaCCGCGCCCGGCGGTGAATTTTCGCTGTCGggt                         <  1:4752221/35‑1 (MQ=255)
           aaaCCGCGCCCGGCGGTGAATTTTCGCTGTCGggt                         <  1:4700739/35‑1 (MQ=255)
            ggttaacttcgcagatgccccagTCGCTGTcgggg                         <  1:7355381‑M1/12‑2 (MQ=255)
            ggttaacttcgcagatgccccagTCGCTGTcgggg                         <  1:5892746‑M1/12‑2 (MQ=255)
            ggttaacttcgcagatgccccagTCGCTGTcgggg                         <  1:3015760‑M1/12‑2 (MQ=255)
             gttaacttcgcagatgccccagTCGCTGtcggggg                        <  1:11621065‑M1/13‑3 (MQ=255)
               cgcgCCCGGCGGTGAATTTTCGCTGTCGGGTGGtt                     <  1:17038982/35‑1 (MQ=255)
               cgcgCCCGGCGGTGAATTTTCGCTGTCGGGTGGtt                     <  1:17292576/35‑1 (MQ=255)
                 cgcCCGGCGGTGAATTTTCGCTGTCGGGTGGtttt                   <  1:3106275/35‑1 (MQ=255)
                 cgcCCGGCGGTGAATTTTCGCTGTCGGGTGGtttt                   <  1:1055426/35‑1 (MQ=255)
                 acttcgcagatgccccagTCGCTGTCGGGGGGttt                    <  1:8101715‑M1/17‑1 (MQ=255)
                  cttcgcagatgccccagTCGCTGTCGGGGGGtttt                   <  1:11477547‑M1/18‑1 (MQ=255)
                   cccGGCGGTGAATTTTCGCTGTCGGGTGGtttttt                 <  1:9550706/35‑1 (MQ=255)
                   cccGGCGGTGAATTTTCGCTGTCGGGTGGtttttt                 <  1:1665723/35‑1 (MQ=255)
                   cccGGCGGTGAATTTTCGCTGTCGGGTGGtttttt                 <  1:10275138/35‑1 (MQ=255)
                    ccGGCGGTGAATTTTCGCTGTCGGGTGGttttttt                <  1:6649645/35‑1 (MQ=255)
                    ccGGCGGTGAATTTTCGCTGTCGGGTGGttttttt                <  1:8857136/35‑1 (MQ=255)
                     cggcggTGAATTTTCGCTGTCGGGTGGTTTTTTTg               <  1:10094252/35‑1 (MQ=255)
                      ggcggTGAATTTTCGCTGTCGGGTGGTTTTTTTGc              <  1:12359256/35‑1 (MQ=255)
                       gcggTGAATTTTCGCTGTCGGGGGGgttttttttt             >  1:14251902/1‑32 (MQ=21)
                       gcggTGAATTTTCGCTGTCGGGGGGGTTTTTTTCt             >  1:7712865/1‑35 (MQ=21)
                       gcggAGAATTTTCGCTGTCGGGGGGGGTTTTTGCt             >  1:10041454/1‑35 (MQ=19)
                        cggTGAATTTTCGCTGTCGGGTGGTTTTTTTGCTg            >  1:182509/1‑35 (MQ=255)
                        cggTGAATTTTCGCTGTCGGGTGGTTTTTTTGCTg            <  1:16176669/35‑1 (MQ=255)
                          ggTGAATTTTCGCTGTCGGGTGGTTTTTTTGCTGt           <  1:538762/35‑1 (MQ=255)
                          ggTGAATTTTCGCTGTCGGGTGGTTTTTTTGCTGt           >  1:5318118/1‑35 (MQ=255)
                          ggTGAATTTTCGCTGTCGGGTGGTTTTTTTGCTGt           >  1:2758552/1‑35 (MQ=255)
                          ggTGAATTTTCGCTGTCGGGTGGTTTTTTTGCTGt           >  1:11843923/1‑35 (MQ=255)
                          ggTGAATTTTCGCTGTCGGGTGGTTTTTTTGCTGt           >  1:15576538/1‑35 (MQ=255)
                          ggTGAATTTTCGCTGTCGGGTGGTTTTTTTGCTGt           >  1:18157913/1‑35 (MQ=255)
                          ggTGAATTTTCGCTGTCGGGTGGTTTTTTTGCTGt           >  1:15729539/1‑35 (MQ=255)
                            tGAATTTTCGCTGTCTGGTGGTTTTTTTGCTGTTa         >  1:10614338/1‑35 (MQ=255)
                             gAATTTTCGCTGTCGGGTGGTTTTTTTGCTGTTAg        <  1:9785102/35‑1 (MQ=255)
                             gAATTTTCGCTGTCGGGTGGTTTTTTTGCTGTTAg        <  1:9020783/35‑1 (MQ=255)
                             gAATTTTCGCTGTCGGGTGGTTTTTTTGCTGTTAg        <  1:5829629/35‑1 (MQ=255)
                              aaTTTTCGCTGTCGGGTGGTTTTTTTGCTGTTAGc       <  1:6858298/35‑1 (MQ=255)
                               aTTTTCGCTGTCGGGTGGTTTTTTTGCTGTTAGCa      <  1:16108220/35‑1 (MQ=255)
                               aTTTTCGCTGTCGGGTGGTTTTTTTGCTGTTAGCa      <  1:9235215/35‑1 (MQ=255)
                               aTTTTCGCTGTCGGGTGGTTTTTTTGCTGTTAGCa      <  1:5301251/35‑1 (MQ=255)
                                ttttCGCTGTCGGGTGGTTTTTTTGCTGTTAGCaa     <  1:16108692/35‑1 (MQ=255)
                                ttttCGCTGTCGGGTGGTTTTTTTGCTGTTAGCaa     <  1:3112496/35‑1 (MQ=255)
                                 tttCGCTGTCGGGTGGTTTTTTTGCTGTTAGCAAc    <  1:7924844/35‑1 (MQ=255)
                                 tttCGCTGTCGGGTGGTTTTTTTGCTGTTAGCAAc    <  1:18620680/35‑1 (MQ=255)
                                  ttCGCTGTCGGGTGGTTTTTTTGCTGTTAGCAAcc   >  1:18562244/1‑35 (MQ=255)
                                  ttCGCTGTCGGGTGGTTTTTTTGCTGTTAGCAAcc   <  1:12983903/35‑1 (MQ=255)
                                   TCGCTGTCGGGTGGTTTTTTTGCTGTTAGCAACCa  >  1:15897867‑M1/1‑35 (MQ=255)
                                   TCGCTGTCGGGTGGTTTTTTTGCTGTTAGCAACCa  >  1:12095561‑M1/1‑35 (MQ=255)
                                   |                                  
GGGCTGAAATAAAACCGCGCCCGGCGGTGAATTTTCGCTGTCGGGTGGTTTTTTTGCTGTTAGCAACCA  >  REL606/370797‑370865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.