New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 580467 = | 60 (0.580) | 4 (0.050) | 3/36 | NT | 9.1% | coding (851/3144 nt) | cusA | copper/silver efflux system, membrane component |
? | REL606 | 2397842 = | 35 (0.450) | coding (824/2646 nt) | yfcTU | predicted outer membrane export usher protein |
Only 100 of 138 total aligned reads displayed.
CGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCAAA > REL606/580433‑580501 | tcaattccgatattttcgacggttttaactatgtt > 1:14827794‑M1/35‑35 (MQ=255) tcaattccgatattttcgacggttttaactatgtt > 1:10649585‑M1/35‑35 (MQ=255) tcaattccgatattttcgacggttttaactatgtt < 1:4434164‑M1/1‑1 (MQ=255) cGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGt < 1:14685970/35‑1 (MQ=255) cGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGt < 1:7401311/35‑1 (MQ=255) cGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGt < 1:9496246/35‑1 (MQ=255) cGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGt < 1:9367899/35‑1 (MQ=255) ggggCATTGCCGAACTAAACGGCGAAGGGGACGTg > 1:6278624/1‑35 (MQ=37) ggggCATTGCCGAACTAAACGGCGAAGGCGAAGTg < 1:14873063/35‑1 (MQ=255) ggggCATTGCCGAACTAAACGGCGAAGGCGAAGTg < 1:8607671/35‑1 (MQ=255) caattccgatattttcgacggttttaactatgtTg > 1:8158755‑M1/34‑35 (MQ=255) caattccgatattttcgacggttttaactatgtTg < 1:10952186‑M1/2‑1 (MQ=255) gggCATTGCCGAACTAAACGGCGAAGGCGAAGTgg > 1:1583229/1‑35 (MQ=255) gggCATTGCCGAACTAAACGGCGAAGGCGAAGTgg < 1:5648314/35‑1 (MQ=255) gggCATTGCCGAACTAAACGGCGAAGGCGAAGTgg > 1:4700307/1‑35 (MQ=255) gggCATTGCCGAACTAAACGGCGAAGGCGAAGTgg < 1:3389376/35‑1 (MQ=255) gggCATTGCCGAACTAAACGGCGAAGGCGAAGCgg > 1:12212553/1‑35 (MQ=255) aattccgatattttcgacggttttaactatgtTgg < 1:5341684‑M1/3‑1 (MQ=255) aattccgatattttcgacggttttaactatgtTgg < 1:13104962‑M1/3‑1 (MQ=255) aattccgatattttcgacggttttaactatgtTgg > 1:10044970‑M1/33‑35 (MQ=255) ggCATTGCCGAACTAAACGGCGAAGGCGAAGTggc < 1:20032900/35‑1 (MQ=255) ggCATTGCCGAACTAAACGGCGAAGGCGAAGTggc > 1:10798876/1‑35 (MQ=255) ggCATTGCCGAACTAAACGGCGAAGGCGAAGTggc < 1:1270229/35‑1 (MQ=255) ggCATTGCCGAACTAAACGGCGAAGGCGAAGGggc > 1:3211911/1‑35 (MQ=255) attccgatattttcgacggttttaactatgtTggc < 1:2083010‑M1/4‑1 (MQ=255) attccgatattttcgacggttttaactatgtTggc < 1:11588542‑M1/4‑1 (MQ=255) ttccgatattttcgacggttttaactatgttgggg < 1:1763156‑M1/5‑3 (MQ=255) ttccgatattttcgacggttttaactatgttgggg < 1:16420977‑M1/5‑3 (MQ=255) ttccgatattttcgacggttttaactatgtTtgcg < 1:15435461‑M1/5‑1 (MQ=255) ttccgatattttcgacggttttaactatgtTggcg > 1:1807149‑M1/31‑35 (MQ=255) ttccgatattttcgacggttttaactatgtTggcg > 1:13698770‑M1/31‑35 (MQ=255) ttccgatattttcgacggttttaactatgtTggcg > 1:16882893‑M1/31‑35 (MQ=255) ttccgatattttcgacgggtttaactatgtTggcg < 1:7302064‑M1/5‑1 (MQ=255) gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg < 1:15283653/35‑1 (MQ=255) gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg < 1:14363059/35‑1 (MQ=255) gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg > 1:4163290/1‑35 (MQ=255) gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg > 1:4169277/1‑35 (MQ=255) gCATTGCCGAACTAAACGGCGAAGGCGAAGCgggg > 1:15176647/1‑33 (MQ=37) tccgatattttcgacggttttaactatgttggctg < 1:19218733‑M1/6‑3 (MQ=255) tccgatattttcgacggttttaactatgtTggcgg > 1:14031450‑M1/30‑35 (MQ=255) tccgatattttcgacggttttaactatgtTggcgg < 1:8319998‑M1/6‑1 (MQ=255) tccgatattttcgacggttttaactatgtTggcgg < 1:16677934‑M1/6‑1 (MQ=255) cATTGCCGAACTAAACGGCGAAGGCGAAGTggcgg > 1:10691906/1‑35 (MQ=255) cATTGCCGAACTAAACGGCGAAGGCGAAGTggcgg > 1:11062038/1‑35 (MQ=255) cATTGCCGAACTAAACGGCGAAGGCGAAGTggcgg < 1:12297684/35‑1 (MQ=255) ccgatattttcgacggttttaactatgtTggcggg < 1:5060415‑M1/7‑1 (MQ=255) ccgatattttcgacggttttaactatgtTggcggg < 1:18799099‑M1/7‑1 (MQ=255) ccgatattttcgacggttttaactatgtTggcggg < 1:19379034‑M1/7‑1 (MQ=255) aTTGCCGAACTAAACGGCGAAGGCGAAGTgggggg > 1:2473563/1‑35 (MQ=255) aTTGCCGAACTAAACGGCGAAGGCGAAGTggcggg < 1:19349813/35‑1 (MQ=255) aTTGCCGAACTAAACGGCGAAGGCGAAGAggcggg > 1:19078372/1‑35 (MQ=255) ttGCCGAACTAAACGGCGAAGGCGAAGTggcgggc < 1:20432073/35‑1 (MQ=255) ttGCCGAACTAAACGGCGAAGGCGAAGCggcgggg > 1:10164171/1‑34 (MQ=255) cgatattttcgacggttttaactatgttggcggga < 1:9571015‑M1/8‑2 (MQ=255) cgatattttcgacggttttaactatgttggcggga < 1:13138839‑M1/8‑2 (MQ=255) cgatattttcgacggttttaactatgtTggcgggc < 1:4594204‑M1/8‑1 (MQ=255) cgatattttcgacggttttaactatgtTggcgggc < 1:18022228‑M1/8‑1 (MQ=255) gCCGAACTAAACGGCGAAGGCGAAGTGgcgggcgg < 1:13407157/35‑1 (MQ=255) gCCGAACTAAACGGCGAAGGCGAAGTGgcgggcgg < 1:11495420/35‑1 (MQ=255) ccGAACTAAACGGCGAAGGCGAAGGGGcggggggg > 1:6626821/1‑35 (MQ=37) ccGAACTAAACGGAGAAGGCGAAGTGGcgggcggg < 1:12723045/35‑1 (MQ=255) cGAACTAAACGGCGAAGGCGAAGTGGCGGGGgggg > 1:17416978/1‑35 (MQ=255) cGAACTAAACGGCGAAGGCGAAGTGGCGGGCgggg < 1:386748/35‑1 (MQ=255) attttcgacggttttaactatgtTGGCGGGCgggg < 1:8046866‑M1/12‑1 (MQ=255) ttttcgacggttttaactatgtTGGCGGGGGGggt < 1:18321347‑M1/13‑1 (MQ=255) ttttcgacggttttaactatgtTGGCGGGCGGggt < 1:3422707‑M1/13‑1 (MQ=255) gAACTAAACGGCGAAGGCGTAGTGGCGGGCGGggt < 1:3097896/35‑1 (MQ=255) gAACTAAACGGCGAAGGCGAAGTGGCGGGGggggg > 1:17964919/1‑34 (MQ=255) gAACTAAACGGCGAAGGCGAAGTGGCGGGGggggg > 1:4176988/1‑34 (MQ=255) gAACTAAACGGCGAAGGCGAAGTGGCGGGCGGggt < 1:5941210/35‑1 (MQ=255) tttcgacggttttaactatgtTGGCGGGCGGggtg < 1:4438622‑M1/14‑1 (MQ=255) cTAAACGGCGAAGGTGAAGTGGCGGGCGGggtggt < 1:5960865/35‑1 (MQ=255) tAAACGGCGAAGGCGAAGTGGCGGGCGGggtggtc < 1:11942700/35‑2 (MQ=255) tAAACGGCGAAGGCGAAGTGGCGGGCGGGgtggtg < 1:15287797/35‑1 (MQ=255) aaaCGGCGAAGGCGAAGTGGCGGGGGGgggggggg > 1:6380372/1‑32 (MQ=25) aaaCGGCGAAGGCGAAGTGGCGGGGGGgggggggg > 1:8155634/1‑32 (MQ=25) aaaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGa < 1:4465531/35‑1 (MQ=255) aaaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGa < 1:6766226/35‑1 (MQ=255) aaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGAt < 1:8423719/35‑1 (MQ=255) aaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGAt < 1:17959683/35‑1 (MQ=255) aCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATc < 1:4994051/35‑1 (MQ=255) tgcgaaggcgaagTGGCGGGCGGGGTGGTGATCCt < 1:3334441/34‑1 (MQ=255) ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt < 1:16872517/35‑1 (MQ=255) ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt < 1:3569013/35‑1 (MQ=255) ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt < 1:328195/35‑1 (MQ=255) ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt < 1:19303425/35‑1 (MQ=255) gcgaaggcgaagTGGCGGGCGGGGTGGTGATCCTg < 1:5191645/35‑1 (MQ=255) gaaggcgaagTGGCGGGCGGGGTGGTGATCCTGCg < 1:17522561/35‑1 (MQ=255) gaaggcgaagTGGCGGGCGGGGTGGTGATCCTGCg < 1:6497288/35‑1 (MQ=255) gcgaagTGGCGGGCGGGGTGGTGATCCTGCGATcc < 1:10607013/35‑1 (MQ=255) gcgaagTGGCGGGCGGGGTGGTGATCCTGCGATcc < 1:20162658/35‑1 (MQ=255) cgaagTGGCGGGCGGGGTGGTGATCCTGCGATCCg < 1:14031774/35‑1 (MQ=255) cgaagTGGCGGGCGGGGTGGTGATCCTGCGATCCg < 1:7234013/35‑1 (MQ=255) cgaagTGGCGGGCGGGGTGGTGATCCTGCGATCCg < 1:1014189/35‑1 (MQ=255) gaagTGGCGGGCGGGGTGGTGATCCTGCGATCCgg < 1:17173489/35‑1 (MQ=255) gaagTGGCGGGCGGGGTGGTGATCCTGCGATCCgg < 1:1803933/35‑1 (MQ=255) aagTGGCGGGCGGGGTGGTGATCCTGCGATCCGGc < 1:4573/35‑1 (MQ=255) agTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCa < 1:8580248/35‑1 (MQ=255) agTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCa < 1:18252069/35‑1 (MQ=255) TGGCGGGCGGGGTGGTGATCCTGCGATCCGGCaaa > 1:17308442‑M1/1‑35 (MQ=255) | CGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCAAA > REL606/580433‑580501 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |