New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 415489872 (0.700)7 (0.080) 5/42 NT 8.7% intergenic (‑261/‑101) coaA/thrU pantothenate kinase/tRNA‑Thr
?REL606 4351442 = 84 (0.930)intergenic (+50/‑88) groEL/yjeI chaperonin GroEL/hypothetical protein

GTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/4154862‑4154898
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGGGGTTTTTCTTTT  >  REL606/4351442‑4351455
                                                   
GTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGC                  <  1:9075035/35‑1
GTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGC                  >  1:14068159/1‑35
GTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGC                  <  1:5665044/35‑1
 TTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCT                 <  1:2297642/35‑1
 TTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCT                 >  1:17445786/1‑35
 TTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCT                 <  1:4206770/35‑1
  TGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTG                >  1:17087980/1‑35
  TGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTG                <  1:15861427/35‑1
  TGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTG                >  1:2395850/1‑35
  TGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTG                >  1:15197735/1‑35
  TGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTG                <  1:5717949/35‑1
  TGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTG                <  1:12141354/35‑1
   GAAAAAGTGTTCTAATCTGCCCTCCGTTCGGCTGG               >  1:10742968/1‑35
   GAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGG               >  1:2699231/1‑35
   GAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGG               >  1:7929560/1‑35
   GAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGG               >  1:953809/1‑35
   GAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGG               >  1:9550333/1‑35
   GAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGG               >  1:14160537/1‑35
    AAAAAGTGTGCTAATCTGCTCTCCGTTCGGCTGGG              >  1:19953655/1‑35
    AAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGGG              >  1:15244574/1‑35
    AAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGGG              >  1:2394914/1‑35
    AAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGGG              >  1:15625991/1‑35
     AAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGt             >  1:12114168/1‑34
     AAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGt             >  1:3881867/1‑34
     AAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGt             >  1:6972542/1‑34
     AAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGG             >  1:314237/1‑35
     AAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGG             >  1:18848101/1‑35
     AAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGG             >  1:1183860/1‑35
      AAAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGtg            >  1:1925384/1‑33
      AAAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGGt            >  1:3406774/1‑34
      AAAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGGt            >  1:6831891/1‑34
      AAAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGGG            >  1:6602774/1‑35
       AAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGTGT           >  1:15280077/1‑35
       AAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGGtt           >  1:5410414/1‑33
       AAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGGGT           >  1:15706328/1‑35
       AAGTGTGCTAATCTGCCCTCCGTTCGGCTGGGGGT           >  1:19241495/1‑35
        AGTGTGCTAATCTGCCCTCCGTTCGGCTGGGGTTT          >  1:10071096/1‑35
         GTGTGCTAATCTGCCCTCCGTTCGGCTGGGTGTTT         >  1:4646702/1‑35
          TGTGCTAATCTGCCCTCCGTTCGGCTGGGTGTTTT        >  1:10508596/1‑35
          TGTGCTAATCTGCCCTCCGTTCGGCTGGGGGTTTT        >  1:6766460/1‑35
            TGCTAATCTGCCCTCCGTTCGGCTGGGTGTTTTTC      >  1:5779491/1‑35
            TGCTAATCTGCCCTCCGTTCGGCTGGGGGTTTTTC      >  1:7328418/1‑35
                AATCTGCCCTCCGTTCGGCTGGGTGTTTTTCTTTT  >  1:2005270/1‑35
                                                   
GTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/4154862‑4154898
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGGGGTTTTTCTTTT  >  REL606/4351442‑4351455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.