New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1723584 =50 (0.490)4 (0.050) 3/36 NT 6.2% intergenic (‑190/‑118) ydhQ/valV hypothetical protein/tRNA‑Val
?REL606 = 2780594 110 (1.070)intergenic (‑196/‑120) cysJ/ygcM sulfite reductase, alpha subunit, flavoprotein/6‑pyruvoyl tetrahydrobiopterin synthase (PTPS)

CGACCGTTTGCAGAGCTTTTAAGCAAATTGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1723617‑1723584
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGTTTTTCA  <  REL606/2780594‑2780584
                                  ||||||           
CGACCGTTTGCAGAGCTTTTAAGCAAATTGGCTAA                  >  1:1039772/1‑35
CGACCGTTTGCAGAGCTTTTAAGCAAATTGGCTAA                  >  1:1519610/1‑35
CGACCGTTTGCAGAGCTTTTAAGCAAATTGGCTAA                  >  1:15562145/1‑35
 GACCGTTTGCAGAGCTTTTAAGCAAATTGGCTAAA                 >  1:15692265/1‑35
 GACCGTTTGCAGAGCTTTTAAGCAAATTGGCTAAA                 >  1:6993245/1‑35
 GACCGTTTGCAGAGCTTTTAAGCAAATTGGCTAAA                 >  1:5750008/1‑35
 GACCGTTTGCAGAGCTTTTAAGCAAATTGGCTAAA                 >  1:5578276/1‑35
  ACCGTTTGCAGAGCTTTTAAGCAAATTGGCTAAAa                >  1:17105628/1‑34
  ACCGTTTGCAGAGCTTTTAAGCAAATTGGCTAAAT                >  1:16297765/1‑35
    CGTTTGCAGAGCTTTTAAGCAAATTGGCTAAATTT              >  1:8424190/1‑35
     GTTTGCAGAGCTTTTAAGCAAATTGGCTAAATTTT             >  1:20051993/1‑35
     GTTTGCAGAGCTTTTAAGCAAATTGGCTAAATTTT             >  1:5382297/1‑35
     GTTTGCAGAGCTTTTAAGCAAATTGGCTAAAATTT             >  1:19696772/1‑35
        TGCAGAGCTTTTAAGCAAATTGGCTATATTTTTTT          >  1:18181257/1‑35
          CAGAGCTTTTAAGCAAATTGGCTAAATTTTTTTtt        >  1:1014444/1‑33
           AGAGCTTTTAAGCAAATTGGCTAAATTTTTTTTTT       >  1:280/1‑35
           AGAGCTTTTAAGCAAATTGGCTAAAATTTTTTGTT       >  1:17696788/1‑35
             AGCTTTTAAGCAAATTGGCTAAATTTTTTTTTTTT     >  1:9666375/1‑35
                TTTTAAGCAAATTGGCTAAATTTTTTTTTTTTTCA  >  1:2353982/1‑35
                                  ||||||           
CGACCGTTTGCAGAGCTTTTAAGCAAATTGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1723617‑1723584
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGTTTTTCA  <  REL606/2780594‑2780584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.