New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1349559 =56 (0.540)6 (0.060) 3/46 NT 8.3% intergenic (‑151/+217) fabI/ycjD enoyl‑(acyl carrier protein) reductase/hypothetical protein
?REL606 = 2307173 79 (0.800)coding (767/1218 nt) yfaW predicted enolase

Only 100 of 138 total aligned reads displayed.

TTTCAGTTCGCGATAACTTTCATACTGCTGTGGCGGCAGGCACTCTTCGATCCATTTCAGGTTATAGGG  >  REL606/2307139‑2307207
                                  |                                  
tttCAGTTCGCGATAACTTTCATACTGCTGTggcg                                    <  1:6943228/35‑1 (MQ=255)
tttCAGTTCGCGATAACTTTCATACTGCTGTggcg                                    >  1:2160929/1‑35 (MQ=255)
tttCAGTTCGCGATAACTTTCATACTGCTGTggcg                                    >  1:2138745/1‑35 (MQ=255)
 ttCAGTTCGCGATAACTTTCATACTGCTGTGGCGg                                   >  1:19508312‑M2/1‑34 (MQ=255)
 ttCAGTTCGCGATAACTTTCATACTGCTGTGGCGg                                   >  1:7694183‑M2/1‑34 (MQ=255)
  tCAGTTCGCGATAACTTTCATACTGCTGTggcggc                                  <  1:6301113/35‑1 (MQ=255)
  tCAGTTCGCGATAACTTTCATACTGCTGTggcggc                                  <  1:15087825/35‑1 (MQ=255)
  tCAGTTCGCGATAACTTTCATACTGCTGTGGCGgg                                  <  1:3650089‑M2/35‑3 (MQ=255)
   cAGTTCGCGATAACTTTCATACTGCTGTGGCggca                                 <  1:14083233/35‑1 (MQ=255)
   cAGTTCGCGATAACTTTCATACTGCTGTGGCggca                                 <  1:2949306/35‑1 (MQ=255)
   cAGTTCGCGATAACTTTCATACTGCTGTGGCggca                                 <  1:11795322/35‑1 (MQ=255)
   cAGTTCGCGATAACTTTCATACTGCTGTGGCGggg                                 <  1:17416080‑M2/35‑4 (MQ=255)
   cAGTTCGCGATAACTTTCATACTGCTGTGGCGggg                                 <  1:13914300‑M2/35‑4 (MQ=255)
    aGTTCGCGATAACTTTCATACTGCTGTGGCggcag                                <  1:7287068/35‑1 (MQ=255)
    aGTTCGCGATAACTTTCATACTGCTGTGGCGgggg                                <  1:15426573‑M2/35‑5 (MQ=255)
     gTTCGCGATAACTTTCATACTGCTGTGGCggcagg                               <  1:7714992/35‑1 (MQ=255)
     gTTCGCGATAACTTTCATAATGCTGTGGCggcagg                               <  1:4519028/35‑1 (MQ=255)
      ttCGCGATAACTTTCATACTGCTGTGGCGgggggg                              <  1:14931248‑M2/35‑7 (MQ=255)
      ttCGCGATAACTTTAATACCGCTGTGGCggcaggc                              <  1:10767168/35‑1 (MQ=25)
       tCGCGATAACTTTCATACTGTTGTGGCggcaggca                             <  1:16471461/35‑1 (MQ=255)
       tCGCGATAACTTTCATACTGCTGTTGCggcagggg                             >  1:7570509/1‑33 (MQ=37)
        cgcgATAACTTTCATACTGCTGTGGCGgggggggc                            <  1:11827569‑M2/35‑9 (MQ=255)
        cgcgATAACTTTCATACTGCTGTGGCGGCAGGCAc                            <  1:4580666/35‑1 (MQ=255)
        cgcgATAACTTTCATACTGCTGTGGCGGCAGGCAc                            <  1:15467379/35‑1 (MQ=255)
         gctaTAACTTTCATACTGCTGTGGCGGCAGGCAct                           <  1:16981700/32‑1 (MQ=255)
         gcgATACCTTTCATACTGCTGTGGCGGCAGGCAct                           <  1:15816396/35‑1 (MQ=255)
         gcgATAACTTTCATACTGCTGTGGCGGCAGGCAct                           <  1:18969047/35‑1 (MQ=255)
         gcgATAACTTTCATACTGATGTGGCGGCAGGCAct                           <  1:6458222/35‑1 (MQ=255)
          cgATACCTTTCATACTGCTGTGGCGGCAGGCActc                          <  1:5630700/35‑1 (MQ=255)
          cgATAACTTTCATACTGCTGTGGCGgggggggctc                          <  1:19680195‑M2/35‑11 (MQ=255)
          cgATAACTTTCATACTGCTGTGGCGgggggggacc                          <  1:17152807‑M2/35‑11 (MQ=255)
          cgATAACTTTCATACTGCTGTGGCGGGAGGGAccc                          >  1:2264970/1‑33 (MQ=25)
          cgATAACTTTCATACTGCTGTGGCGGCAGGCActc                          <  1:4899941/35‑1 (MQ=255)
           gATAACTTTCATACTGCTGTTGCGGCAGGGGctct                         >  1:4102209/1‑35 (MQ=21)
            aTAACTTTCATACTGCTGTGGCGGCAGGCACTCtt                        <  1:9162800/35‑1 (MQ=255)
            aTAACTTTCATACTGCTGTGGCGGCAGGCACTCtt                        <  1:18432561/35‑1 (MQ=255)
            aTAACTTTCATACTGCTGTGGCGGCAGGCACTCtt                        <  1:498385/35‑1 (MQ=255)
             taccTTTCATACTGCTGTGGCGGCAGGCACTCTTc                       <  1:14255628/32‑1 (MQ=255)
             taccTTTCATACTGCTGTGGCGGCAGGCACTCTTc                       <  1:6051897/32‑1 (MQ=255)
             tAACTTTCATACTGCTGTGGCGgggggggcgcttt                       <  1:8404970‑M2/35‑14 (MQ=255)
             tAACTTTCATACTGCTGTGGCGGCAGGCACTCTTc                       <  1:7741540/35‑1 (MQ=255)
             tAACTTTCATACTGCTGTGGCGGCAGGCACTCTTc                       <  1:17515980/35‑1 (MQ=255)
             tAACTTTCATACTGCTGTGGCGGCAGGCACTCTTc                       <  1:7094896/35‑1 (MQ=255)
             tAACTTTCATACTGCTGTGGCGGCAGGCACTCTTc                       <  1:6470331/35‑1 (MQ=255)
              accTTTCATACTGCTGTGGCGGCAGGCACTCTTCg                      <  1:17838669/33‑1 (MQ=255)
              accTTTCATACTGCTGCGGCGGCAGGCACTCTTCg                      <  1:13046161/33‑1 (MQ=37)
              aaCTTTCATACTGCTGTTGCGGCAGGGGCTCCTCg                      >  1:9000424/1‑35 (MQ=16)
              aaCTTTCATACTGCTGTGGCGGCAGGCACTCTTCg                      <  1:15702863/35‑1 (MQ=255)
              aaCTTTCATACTGCTGTGGCGGCAGGCACTCTTCg                      <  1:944358/35‑1 (MQ=255)
              aaCTTTCATAATGCTGTGGCGGCAGGCACTCTTCg                      <  1:4229474/35‑1 (MQ=255)
               ccTTTCATACTGCTGTGGCGGCAGGCACTCTTCGa                     <  1:6599/34‑1 (MQ=255)
               ccTTTCATACTGCTGTGGCGGCAGGCACTCTTCGa                     <  1:7042400/34‑1 (MQ=255)
               aCTTTCATACTGCTGTGGCGGGAGGGACCCttttt                     >  1:14171451/1‑32 (MQ=19)
               aCTTTCATACTGCTGTGGCGGCAGGCACTCTTCGa                     <  1:19578235/35‑1 (MQ=255)
               aCTTTCATACTGCTGTGGCGGCAGGCACTCTTCGa                     <  1:8984584/35‑1 (MQ=255)
               aCTTTCATACTGCTGTGGCGGCAGGCACTCTTCGa                     <  1:12818089/35‑1 (MQ=255)
                cTTTCATACTGCTGTGGCGGCAGGCACTCTTCGAt                    <  1:12417700/35‑1 (MQ=255)
                cTTTCATACTGCTGTGGCGGCAGGCACTCTTCGAt                    <  1:16308263/35‑1 (MQ=255)
                 tttCATACTGCTGTGGCGGCAGGCACTCTTCGATc                   <  1:15589280/35‑1 (MQ=255)
                 tttCATACTGCTGTGGCGGCAGGCACTCTTCGATc                   <  1:19484139/35‑1 (MQ=255)
                 tttCATACTGCTGTGGCGGCAGGCACTCTTCGATc                   <  1:18360889/35‑1 (MQ=255)
                  ttCATACTGCTGTGGCGGCAGGCACTCTTCGATcc                  <  1:13027975/35‑1 (MQ=255)
                   tCATCCTGCTGTGGCGGCAGGCACTCTTCGATCCa                 <  1:5049110/35‑1 (MQ=255)
                   tCATACTGCTGTGGCGGCAGGCACTCTTCGATCCa                 <  1:18292603/35‑1 (MQ=255)
                     atcctgctgTGGCGGCAGGCACTCTTCGATCCAtt               <  1:19222595/32‑1 (MQ=255)
                     aTACTGCTGTGGCGGCAGGCACTCTTCGATCCAtt               <  1:11282210/35‑1 (MQ=255)
                     aTACTGCTGTGGCGGCAGGCACTCTTCGATCCAtt               <  1:7618191/35‑1 (MQ=255)
                     aTACTGCTGTGGCGGCAGGCACTCTTCGATCCAtt               <  1:11065366/35‑1 (MQ=255)
                     aTACTGCTGTGGCGGCAGGCACTCTTCGATCCAtt               <  1:7254149/35‑1 (MQ=255)
                     aTACTGCTGGGGCGGCAGGCACTCTTCGATCCAtt               <  1:2545774/35‑1 (MQ=255)
                     aTACGGCTGTGGCGGCAGGCACTCTTCGATCCAtt               <  1:17110083/35‑1 (MQ=255)
                      tACTGCTGTGGCGGCAGGCACTCTTCGATCCAttt              <  1:9743587/35‑1 (MQ=255)
                       aCTGCTGTGGCGGCAGGCACTCTTCGATCCATTTc             <  1:5091843/35‑1 (MQ=255)
                       aCTGCTGTGGCGGCAGGCACTCTTCGATCCATTTc             <  1:11217849/35‑1 (MQ=255)
                       aCTGCTGTGGCGGCAGGCACTCTTCGATCCATTTc             <  1:6932497/35‑1 (MQ=255)
                        ctgctgTGGCGGCAGGCACTCTTCGATCCATTTCa            <  1:7024234/35‑1 (MQ=255)
                         tgctgTGGCGGCAGGCACTCTTCGATCCATTTCAg           <  1:11903881/35‑1 (MQ=255)
                          gctgTGGCGGCAGGCACTCTTCGATCCATTTCAgg          <  1:10127871/35‑1 (MQ=255)
                           ctgTGGCGGCAGGCACTCTTCGATCCATTTCAGGt         <  1:18967313/35‑1 (MQ=255)
                            tgtgGCGGCAGGCACTCTTCGATCCATTTCAGGtt        <  1:20459553/35‑1 (MQ=255)
                            tgtgGCGGCAGGCACTCTTCGATCCATTTCAGGtt        <  1:5768100/35‑1 (MQ=255)
                            ggtgGCGGCAGGCACTCTTCGATCCATTTCAGGtt        <  1:13760952/34‑1 (MQ=255)
                             gtgGCGGCAGGCACTCTTCGATCCATTTCAGGTta       <  1:12697256/35‑1 (MQ=255)
                               ggcggcAGGCACTCTTCGATCCATTTCAGGTtata     <  1:17970286/35‑1 (MQ=255)
                               ggcggcAGGCACTCTTCGATCCATTTCAGGTtata     <  1:7570775/35‑1 (MQ=255)
                               ggcggcAGGCACTCTTCGATCCATTTCAGGTtata     <  1:4210195/35‑1 (MQ=255)
                               ggcggcAGGCACTCTTCGATCCATTTCAGGTtata     <  1:341911/35‑1 (MQ=255)
                                gcggcAGGCACTCTTCGATCCATTTCAGGTTATAg    <  1:5447902/35‑1 (MQ=255)
                                 cggcAGGCACTCTTCGATCCATTTCAGGTTATAgg   >  1:2305347/1‑35 (MQ=255)
                                 cggcAGGCACTCTTCGATCCATTTCAGGTTATAgg   <  1:8011997/35‑1 (MQ=255)
                                 cggcAGGCACTCTTCGATCCATTTCAGGTTATAgg   <  1:343699/35‑1 (MQ=255)
                                 cggcAGGCACTCTTCGATCCATTTCAGGTTATAgg   <  1:11442719/35‑1 (MQ=255)
                                 cggcAGGCACTCTTCGATCCATTTCAGGTTATAgg   <  1:4117110/35‑1 (MQ=255)
                                  ggcaggcaCTCTTCGATCCATTTCATGTTATAggg  >  1:16943279/1‑35 (MQ=255)
                                  ggcaggcaCTCTTCGATCCATTTCAGGTTATAggg  <  1:20407835/35‑1 (MQ=255)
                                  ggcaggcaCTCTTCGATCCATTTCAGGTTATAggg  <  1:2261955/35‑1 (MQ=255)
                                  ggcaggcaCTCTTCGATCCATTTCAGGTTATAggg  <  1:18232160/35‑1 (MQ=255)
                                  ggcaggcaCTCTTCGATCCATTTCAGGTTATAggg  <  1:14039386/35‑1 (MQ=255)
                                  ggcaggcaCTCTTCGATCCATTTCAGGTTATAggg  >  1:11502592/1‑35 (MQ=255)
                                  ggcaggcaCTCTTCGATCCATTTCAGGTTATAggg  >  1:10337130/1‑35 (MQ=255)
                                  |                                  
TTTCAGTTCGCGATAACTTTCATACTGCTGTGGCGGCAGGCACTCTTCGATCCATTTCAGGTTATAGGG  >  REL606/2307139‑2307207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.