New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1534318 =71 (0.690)12 (0.150) 4/38 NT 24.9% coding (550/1023 nt) yddR D‑ala‑D‑ala transporter subunit
?REL606 = 2036370 16 (0.200)coding (589/1113 nt) wbbC putative glycosyltransferase WbbC

ATGACTGGCTGGATCCACCAACGCACGTTACCGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1534356‑1534318
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTTTTCTCGGTGGGTGCTTTGCATGAAGATAAAC  <  REL606/2036370‑2036337
                                                                         
ATGACTTGCTGGATCCACCAACGCACGTTACCGGC                                        >  1:13178051/1‑35
ATGACTGGCTGGATCCACCAACGCACGTTACCGGC                                        <  1:13661358/35‑1
 TGACTGGCTGGATCCACCAACGCACGTTACCGGCT                                       <  1:14694941/35‑1
  GACTGGCTGGATCCACCAACGCACGTTACCGGCTT                                      <  1:7125177/35‑1
   ACTGGCTGGATCCACCAACGCACGTTACCGGCTTT                                     <  1:2447460/35‑1
   ACTGGCTGGATCCACCAACGCACGTTACCGGCTTT                                     <  1:6167533/35‑1
   ACTGGCTGGATCCACCAACGCACGTTACCGGCTTT                                     <  1:12462441/35‑1
    CTGGCTGGATCCACCAACGCACGTTACCGGCTTTT                                    >  1:14934902/1‑35
    CTGGCTGGATCCACCAACGCACGTTACCGGCTTTT                                    <  1:11678990/35‑1
    CTGGCTGGATCCACCAACGCACGTTACCGGCTTTT                                    <  1:11124186/35‑1
    CTGGCTGGATCCACCAACGCACGTTACCGGCTTTT                                    >  1:10111997/1‑35
     TGGCTGGATCCACCAACGCACGTTACCGGCTTTTT                                   >  1:15980558/1‑35
     TGGCTGGATCCACCAACGCACGTTACCGGCTTTTT                                   >  1:11059650/1‑35
      GGCTGGATCCACCAACGCACGTTACCGGCTTTTTT                                  >  1:8274339/1‑35
       GCTGGATCCACCAACGCACGTTACCGGCTTTTTTT                                 >  1:12339290/1‑35
        CTGGATCCACCAACGCACGTTACCGGCTTTTTTTT                                >  1:8961321/1‑35
        CTGGATCCACCAACGCACGTTACCGGCTTTTTTTT                                >  1:9761052/1‑35
        CTGGATCCACCAACGCACGTTACCGGCTTTTTTTT                                >  1:11425654/1‑35
         TGGATCCACCAACGCACGTTACCGGCTTTTTTTTT                               >  1:16322120/1‑35
          GGATCCACCAACGCACGTTACCGGCTTTTTTTTTC                              >  1:18963262/1‑35
           GATCCACCAACGCACGTTACCGGCTTTTTTTTTCT                             >  1:5664242/1‑35
           GATCCACCAACGCACGTTACCGGCTTTTTTTTTCT                             >  1:14162110/1‑35
           GATCCACCAACGCACGTTACCGGCTTTTTTCTTCT                             >  1:18516955/1‑35
            ATCCACCAACGCACGTTACCGGCTTTTTTTTTCTt                            >  1:5416206/1‑34
             TCCACCAACGCACGTTACCGGCTTTTTTTTTCTCc                           >  1:13390894/1‑34
             TCCACCAACGCACGTTACCGGCTTTTTTTTTCTCG                           >  1:8514367/1‑35
              CCACCAACGCACGTTACCGGCTTTTTTTTTTTCGc                          >  1:16611306/1‑34
               CACCAACGCACGTTACCGGCTTTTTTTTTTTCGGT                         >  1:3454113/1‑35
                 CCAACGCACGTTACCGGCTTTTTTTTTCTTGGTGc                       >  1:14878415/1‑34
                 CCAACGCACGTTACCGGCTTTTTTTTTCTCGTTGc                       >  1:7796676/1‑34
                 CCAACGCACGTTACCGGCTTTTTTTTTCTCGCTGc                       >  1:7319422/1‑34
                                      TTTTTTCTCGGTGGGTGCTTTGCATGAAGATAAAC  <  1:17396908/35‑1
                                                                         
ATGACTGGCTGGATCCACCAACGCACGTTACCGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1534356‑1534318
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTTTTCTCGGTGGGTGCTTTGCATGAAGATAAAC  <  REL606/2036370‑2036337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.