New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 741667 =102 (0.990)24 (0.310) 5/36 NT 25.9% coding (2171/2802 nt) sucA alpha‑ketoglutarate decarboxylase
?REL606 = 1476120 81 (0.790)coding (71/1176 nt) ydcO predicted benzoate transporter

Only 100 of 144 total aligned reads displayed.

ACAATCGCTGCTTGCCAGATTATTGCCGCTGAACTGGCGTAGCCAATTAATACCGCCAGAAACCCCGC  >  REL606/1476087‑1476154
                                 |                                  
tctaTCGCTGCTTGCCAGATTATTGCCGCTGAACt                                   <  1:15370090/32‑1 (MQ=255)
aCAATCGCTGCTTGCCAGATTATTGCCGCTGAACt                                   <  1:3814427/35‑1 (MQ=255)
aCAATCGCTGCTTGCCAGATTATTGCCGCTGAACt                                   <  1:16851599/35‑1 (MQ=255)
 cAATCGCTGCTTGCCAGATTATTGCCGCTGAACTg                                  <  1:10808811/35‑1 (MQ=255)
 cAATCGCTGCTTGCCAGATTATTGCCGCTGAACTg                                  <  1:19993951/35‑1 (MQ=255)
 cAATCGCTGCTTGCCAGATTATTGCCGCTGAACTg                                  >  1:5695518/1‑35 (MQ=255)
 cAATCGCTGCTTGCCAGATTATTGCCGCTGAACTg                                  <  1:11517769/35‑1 (MQ=255)
 cAATCGCTGCTTGCAAGATTATTGCCGCTGAACTg                                  <  1:16367154/35‑1 (MQ=255)
  aaTCGCTGCTTGCCAGATTATTGCCGCTGAACTgg                                 <  1:12656965/35‑1 (MQ=255)
   gccGCTGCTTGCCAGATTATTGCCGCTGAACTGGc                                <  1:2608726/33‑1 (MQ=255)
   aTCGCTGCTTGCCAGATTATTGCCGCTGAACTGGc                                >  1:8142142/1‑35 (MQ=255)
   aTCGCTGCTTGCCAGATTATTGCCGCTGAACTGGc                                <  1:4463758/35‑1 (MQ=255)
   aTCGCTGCTTGCCAGATTATTGCCGCTGAACTGGc                                <  1:13141651/35‑1 (MQ=255)
   aTCGCTGCTTGCCAGATTATTGCCGCTGAACTGGc                                <  1:7319709/35‑1 (MQ=255)
   aTCGCTGCTTGCCAGATTATTGCCGCTGAACTGGc                                >  1:8691071/1‑35 (MQ=255)
   aTCGCTGCTTGCCAGATTATTGCCGCTGAACTGGc                                >  1:11891981/1‑35 (MQ=255)
    tCGCTGCTTGCCAGATTATTGCCGCTGAACTGGCg                               <  1:15905155/35‑1 (MQ=255)
     cGCTGCTTGCCAGATTATTGCCGCTGAACTGGCGt                              <  1:7451878/35‑1 (MQ=255)
     cGCTGCTTGCCAGATTATTGCCGCTGAACTGGCGt                              <  1:8781863/35‑1 (MQ=255)
      gctgctTGCCAGATTATTGCCGCTGAACTGGCGTa                             <  1:12078580/35‑1 (MQ=255)
       ctgctTGCCAGATTATTGCCGCTGAACTGGCGTAg                            >  1:3627140/1‑35 (MQ=255)
       ctgctTGCCAGATTATTGCCGCTGAACTGGCGTAg                            <  1:16067023/35‑1 (MQ=255)
       ctgctTGCCAGATTATTGCCGCTGAACTGGCGTAg                            >  1:1184129/1‑35 (MQ=255)
        tgctTGCCAGATTATTGCCGCTGAACTGGCGTAGc                           <  1:15578131/35‑1 (MQ=255)
        tgctTGCCAGATTATTGCCGCTGAACTGGCGTAGc                           >  1:14313383/1‑35 (MQ=255)
         gctTGCCAGATTATTGCCGCTGAACTGGCGTAGcc                          >  1:7867693/1‑35 (MQ=255)
         gctTGCCAGATTATTGCCGCTGAACTGGCGTAGcc                          >  1:14653297/1‑35 (MQ=255)
          ctTGCCAGATTATTGCCGCTGAACTGGCGTAGCCa                         >  1:7656432/1‑35 (MQ=255)
           ttGCCAGATTATTGCCGCTGAACTGGCGTAGCCaa                        >  1:18970141/1‑35 (MQ=255)
           ttGCCAGATTATTGCCGCTGAACTGGCGTAGCCaa                        >  1:3243288/1‑35 (MQ=255)
           ttGCCAGATTATTGCCGCTGAACTGGCGTAGCCaa                        >  1:1795026/1‑35 (MQ=255)
           ttGCCAGATTATTGCCGCTGAACTGGCGTAGCCaa                        >  1:18218432/1‑35 (MQ=255)
            tGCCAGATTATTGCCGCTGAACTGGCGTAGCCAAt                       >  1:7769795/1‑35 (MQ=255)
            tGCCAGATTATTGCCGCTGAACTGGCGTAGCCAAt                       >  1:1865996/1‑35 (MQ=255)
            caccagATTATTGCCGCTGAACaacaacggcaggg                       <  1:10926945‑M2/33‑14 (MQ=255)
            caccagATTATTGCCGCTGAACaacaacggcaggg                       <  1:7406187‑M2/33‑14 (MQ=255)
            caccagATTATTGCCGCTGAACaacaacggcaggg                       <  1:13154311‑M2/33‑14 (MQ=255)
            caccagATTATTGCCGCTGAACaacaacggcaggg                       <  1:9579786‑M2/33‑14 (MQ=255)
            caccagATTATTGCCGCTGAACaacaacggcaggg                       <  1:16705236‑M2/33‑14 (MQ=255)
             gCCAGATTATTGCCGCTGAACTGGCGTAGCCAAtt                      >  1:18766819/1‑35 (MQ=255)
             gCCAGATTATTGCCGCTGAACTGGCGTAGCCAAtt                      >  1:19276293/1‑35 (MQ=255)
             accaGATTATTGCCGCTGAACaacaacggcagggg                      <  1:16407744‑M2/34‑15 (MQ=255)
             accaGATTATTGCCGCTGAACaacaacggcagggc                      <  1:2759880‑M2/34‑15 (MQ=255)
              ccAGATTATTGCCGCTGAACaacaacggcaggggc                     <  1:4985138‑M2/35‑16 (MQ=255)
              ccAGATTATTGCCGCTGAACaacaacggcagggcc                     <  1:402283‑M2/35‑16 (MQ=255)
              ccAGATTATTGCCGCTGAACaacaacggcaggcgc                     <  1:3954015‑M2/35‑16 (MQ=255)
              ccAGATTATTGCCGCTGAACTGGCGTAGCCAATTa                     >  1:2995538/1‑35 (MQ=255)
              ccAGATTATTGCCGCTGAACTGGCGTAGCCAATTa                     >  1:2106678/1‑35 (MQ=255)
               cAGATTATTGCCGCTGAACaacaacggcaggggcc                    <  1:8215369‑M2/35‑17 (MQ=255)
               cAGATTATTGCCGCTGAACaacaacggcaggggcc                    <  1:8683079‑M2/35‑17 (MQ=255)
               cAGATTATTGCCGCTGAACTGGCGTAGCCAATTaa                    >  1:9893658/1‑35 (MQ=255)
               cAGATTATTGCCGCTGAACTGGCGTAGCCAATTaa                    >  1:19423630/1‑35 (MQ=255)
               cAGATTATTGCCGCTGAACTGGCGTAGCCAATTaa                    >  1:8371222/1‑35 (MQ=255)
                aaatttttGCCGCTGAACTGGCGTAGCCAATTAAt                   <  1:2682756/33‑1 (MQ=25)
                aGATTATTGCGGCTGAACTGGCGTAGCCAATTAAt                   <  1:52918/35‑1 (MQ=255)
                aGATTATTGCCGCTGAACaacaacggcaggggccg                   <  1:20020974‑M2/35‑18 (MQ=255)
                aGATTATTGCCGCTGAACTGGCGTAGCCAATTAAt                   >  1:6112777/1‑35 (MQ=255)
                aGATTATTGCCGCTGAACTGGCGTAGCCAATTAAt                   >  1:10828759/1‑35 (MQ=255)
                 gATTATTGCCGCTGAACaacaacggcaggggcccc                  <  1:17568907‑M2/35‑19 (MQ=255)
                 gATTATTGCCGCTGAACaacaacggcagggcccgg                  <  1:45607‑M2/35‑19 (MQ=255)
                 gATTATTGCCGCTGAACTGGCGTAGCCAATTAATa                  >  1:19773358/1‑35 (MQ=255)
                 gATTATTGCCGCTGAACTGGCGTAGCCAATTAATa                  >  1:15603635/1‑35 (MQ=255)
                  atttttGCCGCTGAACTGGCGTAGCCAATTAATAc                 <  1:527895/35‑1 (MQ=255)
                  attattGCCGCTGAACaacaacggcaggggctgga                 <  1:20123354‑M2/35‑20 (MQ=255)
                  attattGCCGCTGAACaacaacggcaggggccgga                 <  1:5857886‑M2/35‑20 (MQ=255)
                  attattGCCGCTGAACaacaacggcagggcccgga                 <  1:841073‑M2/35‑20 (MQ=255)
                  attattGCCGCTGAACTGGCGTAGCCAATTAATAc                 >  1:2477260/1‑35 (MQ=255)
                  attattGCCGCTGAACTGGCGTAGCCAATTAATAc                 >  1:976983/1‑35 (MQ=255)
                  attattGCCGCTGAACTGGCGTAGCCAATTAATAc                 >  1:18663397/1‑35 (MQ=255)
                  attattGCCGCTGAACTGGCGTAGCCAATTAATAc                 >  1:6879092/1‑35 (MQ=255)
                  attattGCCGCTGAACTAGCGTAGCCAATTAATAc                 >  1:14678166/1‑35 (MQ=255)
                   ttattGCCGCTGAACTGGCGTAGCCAATTAATaac                >  1:9103628/1‑33 (MQ=255)
                   ttattGCCGCTGAACTGGCGTAGCCAATTAATAcc                >  1:3601919/1‑35 (MQ=255)
                   ttattGCCGCTGAACTGGCGTAGCCAATTAATAcc                >  1:11908005/1‑35 (MQ=255)
                    tattGCCGCTGAACaacaacggcaggggccggaac               <  1:18596170‑M2/35‑22 (MQ=255)
                    tattGCCGCTGAACTGGCGTAGCCAATTAATACCg               >  1:9674576/1‑35 (MQ=255)
                    tattGCCGCTGAACTGGCGTAGCCAATTAATACCg               <  1:9211083/35‑1 (MQ=255)
                    tattGCCGCTGAACTGGCGTAGCCAATTAATACCg               >  1:5528068/1‑35 (MQ=255)
                     attGCCGCTGAACaacaacggcaggggccggaaca              <  1:7661950‑M2/35‑23 (MQ=255)
                     attGCCGCTGAACTGGCGTAGCCAATTAATACCGc              >  1:17924837/1‑35 (MQ=255)
                      ttGCCGCTGAACTGGCGTAGCCAATTAATACCGcc             >  1:19338271/1‑35 (MQ=255)
                      ttGCCGCTGAACTGGCGTAGCCAATTAATACCGcc             >  1:10639540/1‑35 (MQ=255)
                       tGCCGCTGAACTGGCGTAGCCAATTAATACCGCCa            >  1:10151872/1‑35 (MQ=255)
                        gCCGCTGAACTGGCGTAGCCAATTAATACCGCCAg           >  1:11533157/1‑35 (MQ=255)
                        gCCGCTGAACTGGCGTAGCCAATTAATACCGCCAg           >  1:5164579/1‑35 (MQ=255)
                          cGCTGAACTGGCGTAGCCAATTAATACCGCCAGaa         >  1:13807032/1‑35 (MQ=255)
                          cGCTGAACTGGCGTAGCCAATTAATACCGCCAGaa         >  1:6099405/1‑35 (MQ=255)
                           gCTGAACTGGCGTAGCCAATTAATACCGCCAGaaa        >  1:12879867/1‑35 (MQ=255)
                            cTGAACTGGCGTAGCCAATTAATACCGCCAGAAAc       >  1:6202425/1‑35 (MQ=255)
                            cTGAACTGGCGTAGCCAATTAATACCGCCAGAAAc       >  1:13857128/1‑35 (MQ=255)
                            cTGAACTGGCGTAGCCAATTAATACCGCCAGAAAc       >  1:19412982/1‑35 (MQ=255)
                            cTGAACTGGCGTAGCCAATTAATACCGCCAGAAAc       >  1:2060851/1‑35 (MQ=255)
                            cTGAACTGGCGTAGCCAATTAATACCGCCAGAAAc       >  1:19654586/1‑35 (MQ=255)
                             tGAACTGGCGTAGCCAATTAATACCGCCAGAAAcc      >  1:2413720/1‑35 (MQ=255)
                             tGAACTGGCGTAGCCAATTAATACCGCCAGAAAcc      >  1:15296785/1‑35 (MQ=255)
                              gAACTGGCGTAGCCAATTAATACCGCCAGAAAccc     >  1:1208343/1‑35 (MQ=255)
                                aCTGGCGTAGCCAATTAATACCGCCAGAAACCCCg   >  1:3779123/1‑35 (MQ=255)
                                aCTGGCGTAGCCAATTAATACCGCCAGAAACCCCg   >  1:19508971/1‑35 (MQ=255)
                                aCTGGCGTAGCCAATTAATACCGCCAGAAACCCCg   >  1:7004331/1‑35 (MQ=255)
                                 cTGGCGTAGCCAATTAATACCGCCAGAAACCCCGc  >  1:15837049/1‑35 (MQ=255)
                                 |                                  
ACAATCGCTGCTTGCCAGATTATTGCCGCTGAACTGGCGTAGCCAATTAATACCGCCAGAAACCCCGC  >  REL606/1476087‑1476154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.