New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 225795 =119 (1.160)11 (0.130) 3/40 NT 13.7% coding (123/573 nt) gmhB hypothetical protein
?REL606 2126049 = 40 (0.470)coding (187/1041 nt) gatD galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding

TGGTTACTACCACCAGCGCAAACCCCATTTTTTTTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/225832‑225795
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagcCGCTAAATTCATGGCCTAACGTTATTGGATAATA  >  REL606/2126049‑2126082
                                                                        
TGGTTACTACCACCAGCGCAAACCCCATTTTTTTT                                       >  1:3426349/1‑35
TGGTTACTACCACCAGCGCAAACCCCATTTTTTTT                                       >  1:1935798/1‑35
TGGTTACTACCACCAGCGCAAACCCCATTTTTTTT                                       >  1:13390709/1‑35
 tGTTACTACCACCAGCGCAAACCCCATTTTTTTTA                                      >  1:6988985/2‑35
 GGTTACTCCCACCAGCGCAAACCCCATTTTTTTTA                                      <  1:14604348/35‑1
 GGTTACTCCCACCAGCGCAAACCCCATTTTTTTTA                                      <  1:10550451/35‑1
 GGTTACTCCCACCAGCGCAAACCCCATTTTTTTTA                                      <  1:7647869/35‑1
 GGTTACTACCACCAGCGCAAACCCCATTTTTTTTA                                      >  1:15848330/1‑35
 GGTTACTACCACCAGCGCAAACCCCATTTTTTTTA                                      >  1:13557691/1‑35
 GGTTACTACCACCAGCGCAAACCCCATTTTTTTTA                                      >  1:4808384/1‑35
 GGTTACTACCACCAGCGCAAACCCCATTTTTTTTA                                      >  1:4625626/1‑35
 GGTTACTACAACCAGCGCAAACCCCATTTTTTTTA                                      <  1:10341587/35‑1
  GTTACTCCCACCAGCGCAAACCCCATTTTTTTTAG                                     <  1:8890566/35‑1
  GTTACTACCACCAGCGCAAACCCCATTTTTTTTAG                                     >  1:11057422/1‑35
   ttcCTACCACCAGCGCAAACCCCATTTTTTTTAGC                                    <  1:6685738/32‑1
   TTACTCCCACCAGCGCAAACCCCATTTTTTTTAGC                                    <  1:1661832/35‑1
   TTACTACCACCAGCGCAAACCCCATTTTTTTTAGC                                    >  1:3690584/1‑35
   TTACTACCACCAGCGCAAACCCCATTTTTTTTAGC                                    >  1:15298598/1‑35
      CTACCACCAGCGCAAACCCCATTTTTTTTAGCCcg                                 >  1:13195316/1‑33
                       cttATTTTTTTTAGCCGCTAAATTCATGGCCTAAC                <  1:2766737/32‑1
                       CCCATTTTTTTTAGCCGCTAAATTCATGGCCTAAC                <  1:2129625/35‑1
                        tctTTTTTTTTAGCCGCTAAATTCATGGCCTAACG               <  1:18420847/32‑1
                        ctATTTTTTTTAGCCGCTAAATTCATGGCCTAACG               <  1:11136093/33‑1
                        catTTTTTTTTAGCCGCTAAATTCATGGCCTAACG               <  1:10886374/32‑1
                         gATTTTTTTTAGCCGCTAAATTCATGGCCTAACGT              <  1:2460108/34‑1
                         acaTTTTTTTAGCCGCTAAATTCATGGCCTAACGT              <  1:4233539/32‑1
                          tTTTTTTTTAGCCGCTAAATTCATGGCCTAACGTT             <  1:9325104/34‑1
                           ataTTTTTAGCCGCTAAATTCATGGCCTAACGTTA            <  1:15862848/32‑1
                           TTTTTTTTAGCCGCTAAATTCATGGCCTAACGTTA            <  1:4949527/35‑1
                           TTTTTTTTAGCCGCTAAATTCATGGCCTAACGTTA            <  1:6330035/35‑1
                            TTTTTTTAGCCGCTAAATTCATGGCCTAACGTTAT           <  1:9611712/35‑1
                              aTTTTAGCCGCTAAATTCATGGCCTAACGTTATTG         <  1:12308943/34‑1
                              TTTTTAGCCGCTAAATTCATGGCCTAACGTTATTG         <  1:471850/35‑1
                              TTTTTAGCCGCTAAATTCATGGCCTAACGTTATTG         <  1:4017316/35‑1
                              TTTTTAGCCGCTAAATTCATGGCCTAACGTTATTG         <  1:2783275/35‑1
                              TTTTTAGCCGCTAAATTCATGGCCTAACGTTATTG         <  1:10008518/35‑1
                              TTTTTAGCCGCTAAATTCATGGCCTAACGTTATTG         <  1:15903737/35‑1
                               TTTTAGCCGCTAAATTCATGGCCTAACGTTATTGG        <  1:3849649/35‑1
                               TTTTAGCCGCTAAATTCATGGCCTAACGTTATTGG        <  1:17056460/35‑1
                                TTTAGCCGCTAAATTCATGGCCTAACGTTATTGGA       <  1:9061578/35‑1
                                TTTAGCCGCTAAATTCATGGCCTAACGTTATTGGA       <  1:1335933/35‑1
                                 TTAGCCGCTAAATTCATGGCCTAACGTTATTGGAT      <  1:18142902/35‑1
                                 TTAGCCGCTAAATTCATGGCCTAACGTTATTGGAT      <  1:10118338/35‑1
                                 TTACCCGCTAAATTCATGGCCTAACGTTATTGGAT      <  1:8364050/35‑1
                                  TAGCCGCTAAATTCATGGCCTAACGTTATTGGATA     <  1:13497523/35‑1
                                  TAGCCGCTAAATTCATGGCCTAACGTTATTGGATA     >  1:11297583/1‑35
                                  TAGCCGCTAAATTCATGGCCTAACGTTATTGGATA     >  1:7681657/1‑35
                                  TAGCCGCTAAATTCATGGCCTAACGTTATTGGATA     >  1:7792099/1‑35
                                   AGCCGCTAAATTCATGGCCTAACGTTATTGGATAA    >  1:9802947/1‑35
                                   AGCCGCTAAATTCATGGCCTAACGTTATTGGATAA    <  1:1641078/35‑1
                                   AGCCGCTAAATTCATGGCCTAACGTTATTGGATAA    >  1:3729528/1‑35
                                    GCCGCTAAATTCATGGCCTAACGTTATTGGATAAT   >  1:7874243/1‑35
                                    GCCGCTAAATTCATGGCCTAACGTTATTGGATAAT   <  1:17589487/35‑1
                                    GCCGCTAAATTCATGGCCTAACGTTATTGGATAAT   <  1:9481012/35‑1
                                     CCGCTAAATTCATGGCCTAACGTTATTGGATAATA  <  1:7972838/35‑1
                                     CCGCTAAATTCATGGCCTAACGTTATTGGATAATA  <  1:13137163/35‑1
                                     CCGCTAAATTCATGGCCTAACGTTATTGGATAATA  >  1:19760698/1‑35
                                                                        
TGGTTACTACCACCAGCGCAAACCCCATTTTTTTTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/225832‑225795
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagcCGCTAAATTCATGGCCTAACGTTATTGGATAATA  >  REL606/2126049‑2126082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.