New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 246042 | 115 (1.120) | 8 (0.080) | 5/44 | NT | 10.0% | coding (1833/2445 nt) | fadE | acyl‑CoA dehydrogenase |
? | REL606 | 503801 = | 39 (0.410) | coding (587/927 nt) | ybbS | DNA‑binding transcriptional activator of the allD operon |
GGTTAAGGTGCGGGCGCTGTCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGG > REL606/503767‑503835 | ggTTAAGGTGCGGGCGCTGTCTTCAATATTGAccg < 1:18356297/35‑1 (MQ=255) ggTTAAGGTGCGGGCGCTGTCTTCAATATTGAccg < 1:17672885/35‑1 (MQ=255) ggTTAAGGTGCGGGCGCTGTCTTCAATATTGAccg < 1:4079372/35‑1 (MQ=255) ggTTAAGGTGCGGGCGCTGTCTTCAATATTGAccg < 1:14447272/35‑1 (MQ=255) gTTAAGGTGCGGGCGCTGTCTTCAATATTGCccgc < 1:3482828/35‑1 (MQ=255) gTTAAGGTGCGGGCGCTGTCTTCAATATTGAccgc > 1:5264368/1‑35 (MQ=255) aaGGTGCGGGCGCTGTCTTCAATATTGACCGCCgg > 1:4079911/1‑35 (MQ=255) aGGTGCGGGCGCTGTCTTCAATATTGAccgccgca > 1:18075106/1‑33 (MQ=255) aGGTGCGGGCGCTGTCTTCAATATTGACCGCCggg > 1:908890/1‑34 (MQ=255) gTGCGGGCGCTGTCTTCAATATTGACCGCCGGaaa > 1:18956764/1‑35 (MQ=255) gTGCGGGCGCTGTCTTCAATATTGACCGCCGGaaa > 1:10719070/1‑35 (MQ=255) gTGCGGGCGCTGTCTCCAATATTGACCGCCGGaaa > 1:3034888/1‑35 (MQ=255) gCGGGCGCTGTCTTCAATATTGACCGCCGGAAAgc > 1:3426940/1‑35 (MQ=255) cGGGCGCTGTCTTCAATATTGACCGCCGGAAAgcg > 1:18948003/1‑35 (MQ=255) cGGGCGCTGTCTTCAATATTGACCGCCGGAAAgcg > 1:9175316/1‑35 (MQ=255) gggCGCTGTCTTCAATATTGACCGCCGGAAAgcgc > 1:14461665/1‑35 (MQ=255) gggCGCTGTCTTCAATATTGACCGCCGGAAAgcgc > 1:11222731/1‑35 (MQ=255) gggCGCTGTCTTCAATATTGACCGCCGGAAAgcgc > 1:2491983/1‑35 (MQ=255) gggCGCTGTCTTCAATATTCCCCGCCGGAAAgcgc < 1:6034129/35‑1 (MQ=37) ggCGCTGTCTTCAATATTGACCGCCGGAAAGcgcc > 1:3900974/1‑35 (MQ=255) ggCGCTGTCTTCAATATTGACCGCCGGAAAGcgcc > 1:10586942/1‑35 (MQ=255) ggCGCTGTCTTCAATATTGACCGCAGGAAAGcgcc < 1:17177516/35‑1 (MQ=255) cgcTGTCTTCAATATTGACCGCCGGAAAGcgccgc > 1:1504823/1‑35 (MQ=255) cgcTGTCTTCAATATTGACCGCCGGAAAGcgccgc > 1:11035903/1‑35 (MQ=255) cgcTGTCTTCAATATTGACCGCCGGAAAGcgccgc > 1:10146601/1‑35 (MQ=255) gcTGTCTTCAATATTGACCGCCGGAAAGCGCCGCa > 1:3378503/1‑35 (MQ=255) gcTGTCTTCAATATTGACCGCCGGAAAGCGCCGCa > 1:18305621/1‑35 (MQ=255) gcTGTCTTCAATATTGACCGCCGGAAAGCGCCGCa > 1:10829187/1‑35 (MQ=255) tGTCTTCAATATTGACCGCCGGAAATCTCCGCAAc > 1:10951669/1‑35 (MQ=37) tGTCTTCAATATTGACCGCCGGAAATCGCCGCAAc > 1:16588545/1‑35 (MQ=255) tGTCTTCAATATTGACCGCCGGAAAGCGCCGCAAc > 1:1233603/1‑35 (MQ=255) tGTCTTCAATATTGACCGCCGGAAAGCGCCGCAAc > 1:6128032/1‑35 (MQ=255) gTCTTCAATATTGACCGCCGGAAAGCGCCGCAACt > 1:18252051/1‑35 (MQ=255) gTCTTCAATATTGACCGCCGGAAAGCGCCGCAACt > 1:16461301/1‑35 (MQ=255) ttaaaatatcccccGCCGGAAAGCGCCGCAACTgc < 1:4532657‑M2/21‑1 (MQ=255) cTTCAATATTGACCGCCTGAAAGCGCCGCAACTgc > 1:12398316/1‑35 (MQ=255) cTTCAATATTGACCGCCGGAAAGCGCCGCAACTgc > 1:14729879/1‑35 (MQ=255) ttcaatatcccccGCCGGAAAGCGCCGCAACTgcg < 1:18715818‑M2/22‑1 (MQ=255) taaaatatcccccGCCGGAAAGCGCCGCAACTgcg < 1:9825066‑M2/22‑1 (MQ=255) tCAATATTGACCGCCGGAAAGCGCCGCAACTgcgc > 1:3718415/1‑35 (MQ=255) tCAATATTGACCGCCGGAAAGCGCCGCAACTgccc > 1:8903367/1‑33 (MQ=255) aaaatatcccccGCCGGAAAGCGCCGCAACTgcgc < 1:18617922‑M2/23‑1 (MQ=255) cAATATTGACCGCCGGAAAGCGCCGCAACTGCGCt > 1:13015537/1‑35 (MQ=255) cAATATTGACCGCCGGAAAGCGCCGCAACTGCGCt > 1:2378487/1‑35 (MQ=255) aaatattccccGCCGGAAAGCGCCGCAACTGCGCt < 1:1320790‑M2/24‑1 (MQ=255) aaTATTGACCGCCGGAAAGCGCCGCAACTGCGCtt > 1:5331198/1‑35 (MQ=255) aaTATTGACCGCCGGAAAGCGCCGCAACTGCGCtt > 1:12903524/1‑35 (MQ=255) atatTGACCGCCGGAAAGCGCCGCAACTGCTCTTc > 1:5152392/1‑35 (MQ=255) atatTGACCGCCGGAAAGCGCCGCAACTGCGCTTc > 1:5411136/1‑35 (MQ=255) atatTGACCGCCGGAAAGCGCCGCAACTGCGCTTc > 1:16234265/1‑35 (MQ=255) atatTGACCGCCGGAAAGCGCCGCAACTGCGCTTc > 1:14102185/1‑35 (MQ=255) tatgccccGCCGGAAAGCGCCGCAACTGCGCTTCt < 1:10516017‑M2/27‑1 (MQ=255) tatcccccGCCGGAAAGCGCCGCAACTGCGCTTCt < 1:5570266‑M2/27‑1 (MQ=255) tatcccccGCCGGAAAGCGCCGCAACTGCGCTTCt < 1:20147804‑M2/27‑1 (MQ=255) tatTGACCGCCGGAAAGCGCCGCAACTGCGCTTCt > 1:17651163/1‑35 (MQ=255) tatTGACCGCCGGAAAGCGCCGCAACTGCGATTCt > 1:5116957/1‑35 (MQ=255) attcccccGCCGGAAAGCGCCGCAACTGCGCTTCt < 1:9077650‑M2/27‑1 (MQ=255) tttccccGCCGGAAAGCGCCGCAACTGCGCTTCTg < 1:17339291‑M2/28‑1 (MQ=255) atcccccGCCGGAAAGCGCCGCAACTGCGCTTCTg < 1:12868490‑M2/28‑1 (MQ=255) atcccccGCCGGAAAGCGCCGCAACTGCGCTTCTg < 1:9326961‑M2/28‑1 (MQ=255) atTGACCGCCGGAAAGCGCCGCAACTGCGCttaga > 1:2381505/1‑32 (MQ=255) atTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTg > 1:20545490/1‑35 (MQ=255) ttGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGt > 1:13157439/1‑35 (MQ=255) tgacccGCCGGAAAGCGCCGCAACTGCGCTTCTGt < 1:12622066‑M2/29‑1 (MQ=255) tcccccGCCGGAAAGCGCCGCAACTGCGCTTCTGt < 1:14956776‑M2/29‑1 (MQ=255) tcccccGCCGGAAAGCGCCGCAACTGCGCTTCTGt < 1:14981556‑M2/29‑1 (MQ=255) tcccccGCCGGAAAGCGCCGCAACTGCGCTTCTGt < 1:9559301‑M2/29‑1 (MQ=255) tcccccGCCGGAAAGCGCAGCAACTGCGCTTCTGt < 1:13819715‑M2/29‑1 (MQ=255) gcccccGCCGGAAAGCGCCGCAACTGCGCTTCTGt < 1:19944543‑M2/29‑1 (MQ=255) tccccGCCGGAAAGCGCCGCAACTGCGCTTCTGtt < 1:13312923‑M2/30‑1 (MQ=255) tGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGtt > 1:19973316/1‑35 (MQ=255) cccccGCCGGAAAGCGCCGCAACTGCGCTTCTGtt < 1:1106775‑M2/30‑1 (MQ=255) cccccGCCGGAAAGCGCCGCAACTGCGCTTCTGtt < 1:17891805‑M2/30‑1 (MQ=255) gcccGCCGGAAAGCGCAGCAACTGCGCTTCTGTTa < 1:14516009‑M2/31‑1 (MQ=255) gACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTa > 1:658251/1‑35 (MQ=255) ccccGCCGGNAAGCGCCGCAACTGCGCTTCTGTTa < 1:12319789‑M2/31‑1 (MQ=255) ccccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTa < 1:8623188‑M2/31‑1 (MQ=255) ccccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTa < 1:1609803‑M2/31‑1 (MQ=255) ccccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTa < 1:17622989‑M2/31‑1 (MQ=255) ccccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTa < 1:14662960‑M2/31‑1 (MQ=255) cccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAg < 1:19334845‑M2/32‑1 (MQ=255) ccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGc > 1:11645763‑M2/3‑35 (MQ=255) ccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGc > 1:3547283‑M2/3‑35 (MQ=255) cGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCg > 1:12546879‑M2/2‑35 (MQ=255) cGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCg < 1:799961‑M2/34‑1 (MQ=255) cGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCg < 1:12753859‑M2/34‑1 (MQ=255) cGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCg < 1:16392887‑M2/34‑1 (MQ=255) cGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCg < 1:20087466‑M2/34‑1 (MQ=255) gccgGAAAGCGCCGCAACTGCGCTTCTGTTAGCgg > 1:9443735/1‑35 (MQ=255) gccgGAAAGCGCCGCAACTGCGCTTCTGTTAGCgg > 1:14406285/1‑35 (MQ=255) gccgGAAAGCGCCGCAACTGCGATTCTGTTAGCgg < 1:5205527/35‑1 (MQ=255) | GGTTAAGGTGCGGGCGCTGTCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGG > REL606/503767‑503835 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |