New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2017663 = | 30 (0.290) | 18 (0.200) | 5/42 | NT | 23.5% | intergenic (‑158/+109) | yeeF/yeeY | predicted amino‑acid transporter/predicted DNA‑binding transcriptional regulator |
? | REL606 | 3912266 = | 91 (1.010) | intergenic (+46/‑94) | ilvL/ilvG | ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit |
AAAAATGACTAAAAACCGACGTTTCATCAGCGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2017698‑2017663 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGTTTTTTTTGA > REL606/3912266‑3912278 AAAAATTACTAAAAACCGACGTTTCATCAGCGTCG > 1:3036473/1‑35 AAAAATGACTAAAAACCGACGTTTCATCAGCGTCG > 1:18318872/1‑35 AAAAATGACTAAAAACCGACGTTTCATCAGCGTCG > 1:11165611/1‑35 AATGACTAAAAACCGACGTTTCATCAGCGTCGGGG > 1:17216064/1‑35 TGACTAAAAACCGACGTTTCATCAGCGTCGGGGGT > 1:1279604/1‑35 ACTAAAAACCGACGTTTCATCAGCGTCGGGGGTTT > 1:19030614/1‑35 ACTAAAAACCGACGTTTCATCAGCGTCGGGGGGTT > 1:9056801/1‑35 ACTAAAAACCGACGTTTCATCAGCGTCGGGGGGTT > 1:20276429/1‑35 CTAAAAACCGACGTTTCATCAGCGTCGGGGGTTTT > 1:10625995/1‑35 CTAAAAACCGACGTTTCATCAGCGTCGGGGGGTTT > 1:10934208/1‑35 TAAAAACCTACGTTTCATCAGCGTCGGGGGTTTTT > 1:5424980/1‑35 TAAAAACCGACGTTTCATCAGCGTCTGGGGTTTTT > 1:902871/1‑35 TAAAAACCGACGTTTCATCAGCGTCGGGGGGTTTT > 1:5798182/1‑35 AAAACCGACGTTTCATCAGCGTCGGGGGTTTTTTT > 1:15893402/1‑35 AAAACCGACGTTTCATCAGCGTCGGGGGTTTTTTT > 1:12780314/1‑35 AAAACCGACGTTTCATCAGCGTCGGGGGTTTTTTT > 1:8058193/1‑35 AAAACCGACGTTTCATCAGCGTCGGGGGGTTTTTT > 1:1111737/1‑35 AAAACCGACGTTTCATCAGCGTCGGGGGGTTTTTT > 1:10421962/1‑35 AAACCGACGTTTCATCAGCGTCGGGGGTTTTTTTT > 1:5702640/1‑35 AACCGACGTTTCATCAGCGTCGGGGGTTTTTTTTt > 1:10243371/1‑34 AACCGACGTTTCATCAGCGTCGGGGGGTTTTTTTt > 1:5180529/1‑34 ACCGACGTTTCATCAGCGTCGGGGGTTTTTTTTtt > 1:16882405/1‑33 ACCGACGTTTCATCAGCGTCGGGGGTTTTTTTTtt > 1:6223666/1‑33 AAAAATGACTAAAAACCGACGTTTCATCAGCGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2017698‑2017663 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGTTTTTTTTGA > REL606/3912266‑3912278 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |