New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 362546064 (0.620)22 (0.260) 7/40 NT 30.7% pseudogene (3/738 nt) yhjQ b3534; cell division protein (chromosome partitioning ATPase)
?REL606 = 3992020 46 (0.540)coding (141/510 nt) ECB_03720 conserved hypothetical protein

TGATGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3625423‑3625460
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcCATTGAAACGGATCCCGGTGCAAGTGCCTTCCCT  <  REL606/3992020‑3991987
                                                                        
TGATGGTTGTTGTCCCCACGCCTCCCCGCCCCCCC                                       <  1:9259149/35‑1
  ATGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTG                                     <  1:14295100/35‑1
  ATGGTTGTTGTCCCCAAGCCTCCCCGCCCCCCCTG                                     <  1:6379697/35‑1
   TGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCctg                                    <  1:12126136/35‑4
   TGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGC                                    <  1:15659230/35‑1
                   cCCTCCCCCCCCCCCCTGCCATTGAAACGGATCCC                    <  1:16997067/34‑1
                    CCTCCCCCCCCCCCCTGCCATTGAAACGGATCCCG                   <  1:8674388/35‑1
                     CTCCCCCCCCCCCCTGCCATTGAAACGGATCCCGG                  <  1:1308403/35‑1
                      cCCCCCCCCCCCCTGCCATTGAAACGGATCCCGGT                 <  1:9966379/34‑1
                      cCCCCCCCCCCCCTGCCATTGAAACGGATCCCGGT                 <  1:1995988/34‑1
                      aCCCCCCCCCCCCTGCCATTGAAACGGATCCCGGT                 <  1:6293306/34‑1
                      TCCCCCCCCCCCCTGCCATTGAAACGGATCCCGGT                 <  1:6995215/35‑1
                       tCCCCCCCCCCCTGCCATTGAAACGGATCCCGGTG                <  1:11425242/34‑1
                       CCCCCCCCCCCCTGCCATTGAAACGGATCCCGGTG                <  1:7546485/35‑1
                       CCCCCCCCCCCCTGCCATTGAAACGGATCCCGGTG                <  1:10625689/35‑1
                       CCCCCCCCCCCCTGCCATTGAAACGGATCCCGGTG                <  1:9634289/35‑1
                        CCCCCCCCCCCTGCCATTGAAACGGATCCCGGTGC               <  1:5198390/35‑1
                        CCCCCCCCCCCTGCCATTGAAACGGATCCCGGTGC               <  1:10205387/35‑1
                         CCGCCCCCCCTGCCATTGAAACGGATCCCGGTGCA              <  1:13469155/35‑1
                          ccCCCCCCCTGCCATTGAAACGGATCCCGGTGCAA             <  1:5069608/33‑1
                          ccCCCCCCCTGCCATTGAAACGGATCCCGGTGCAA             <  1:8891533/33‑1
                          ccCCCCCCCTGCCATTGAAACGGATCCCGGTGCAA             <  1:17371525/33‑1
                           cCCCCCCCTGCCATTGAAACGGATCCCGGTGCAAG            <  1:7222412/34‑1
                           cCCCCCCCTGCCATTGAAACGGATCCCGGTGCAAG            <  1:2482922/34‑1
                            CCCCCCCTGCCATTGAAACGGATCCCGGTGCAAGT           <  1:13869767/35‑1
                            CCCCCCCTGCCATTGAAACGGATCCCGGTGCAAGT           <  1:9414892/35‑1
                            CCCCCCCTGCCATTGAAACGGATCCCGGTGCAAGT           <  1:19351283/35‑1
                             CCCCCCTGCCATTGAAACGGATCCCGGTGCAAGTG          <  1:15353296/35‑1
                             CCCCCCTGCCATTGAAACGGATCCCGGTGCAAGTG          <  1:376980/35‑1
                             CCCCCCTGCCATTGAAACGGATCCCGGTGCAAGTG          <  1:10130357/35‑1
                               CCCCTGCCATTGAAACGGATCCCGGTGCAAGTGCC        <  1:3100798/35‑1
                               CCCCTGCCATTGAAACGGATCCCGGTGCAAGTGCC        <  1:18666712/35‑1
                               CCCCTGCCATTGAAACGGATCCCGGTGCAAGTGCC        <  1:17840025/35‑1
                                CCCTGCCATTGAAACGGATCCCGGTGCAAGTGCCT       <  1:104660/35‑1
                                CCCTGCCATTGAAACGGATCCCGGTGCAAGTGCCT       <  1:13326347/35‑1
                                 CCTGCCATTGAAACGGATCCCGGTGCAAGTGCCTT      <  1:10238596/35‑1
                                 CCTGCCATTGAAACGGATCCCGGTGCAAGTGCCTT      <  1:908297/35‑1
                                 CCTGCCATTGAAACGGATCCCGGTGCAAGTGCCTT      <  1:733857/35‑1
                                 CCTGCCATTGAAACGGATCCCGGTGCAAGTGCCTT      <  1:6349489/35‑1
                                 CCTGCCATTGAAACGGATCCCGGTGCAAGTGCCTT      <  1:13474168/35‑1
                                 CCTGCCATTGAAACGGATCCCGGTGCAAGTGCCTT      <  1:161849/35‑1
                                 CCTGCCATTGAAACGGATCCAGGTGCAAGTGCCTT      <  1:10419030/35‑1
                                  CTGCCATTGAAACGGATCCCGGTGCAAGTGCCTTC     >  1:15374690/1‑35
                                  CTGCCATTGAAACGGATCCCGGTGCAAGTGCCTTC     >  1:17163340/1‑35
                                  CTGCCATTGAAACGGATCCCGGTGCAAGTGCCTTC     >  1:7237249/1‑35
                                  CTGCCATTGAAACGGATCCCGGTGCAAGTGCCTTC     <  1:7052560/35‑1
                                   TGCCATTGAAACGGATCCCGGTGCAAGTGCCTTCC    >  1:10116050/1‑35
                                   TGCCATTGAAACGGATCCCGGTGCAAGTGCCTTCC    >  1:951964/1‑35
                                   TGCCATTGAAACGGATCCCGGTGCAAGTGCCTTCC    <  1:11547017/35‑1
                                   TGCCATTGAAACGGATCCCGGTGCAAGTGCCTTCC    >  1:13384080/1‑35
                                    cCCATTGAAACGGATCCCGGTGCAAGTGCCTTCCC   >  1:27020/2‑35
                                    GCCATTGAAACGGATCCCGGTGCAAGTGCCTTCCC   <  1:16314315/35‑1
                                    GCCATTGAAACGGATCCCGGTGCAAGTGCCTTCCC   >  1:16509266/1‑35
                                    GCCATTGAAACGGATCCCGGTGCAAGTGCCTTCCC   >  1:5233909/1‑35
                                    GCCATTGAAACGGATCCCGGTGCAAGTGCCTTCCC   <  1:8333603/35‑1
                                    GCCATTGAAACGGATCCCGGTGCAAGTGCCTTCCC   <  1:10293208/35‑1
                                    GCCATTGAAACGGATCCCGGTGCAAGTGCCTTCCC   >  1:17648561/1‑35
                                     CCATTGAAACGGATCCCGGTGCAAGTGCCTTCCCT  >  1:13467677/1‑35
                                     CCATTGAAACGGATCCCGGTGCAAGTGCCTTCCCT  >  1:6204930/1‑35
                                     CCATTGAAACGGATCCCGGTGCAAGTGCCTTCCCT  >  1:11312685/1‑35
                                     CCATTGAAACGGATCCCGGTGCAAGTGCCTTCCCT  >  1:19098239/1‑35
                                     CCATTGAAACGGATCCCGGTGCAAGTGCCTTCCCT  <  1:18805687/35‑1
                                     CCATTGAAACGGATCCCGGTGCAAGTGCCTTCCCT  >  1:15046405/1‑35
                                     CCATTGAAACGGATCCCGGTGCAAGTGCCTTCCCT  <  1:15521541/35‑1
                                     CCATTGAAACGGATCCCGGTGCAAGTGCCTTCCCT  <  1:2842419/35‑1
                                                                        
TGATGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3625423‑3625460
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcCATTGAAACGGATCCCGGTGCAAGTGCCTTCCCT  <  REL606/3992020‑3991987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.