New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 197679 =131 (1.270)16 (0.200) 5/38 NT 15.6% intergenic (+120/‑66) ispC/uppS 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase/undecaprenyl pyrophosphate synthase
?REL606 2304413 = 69 (0.850)coding (802/903 nt) yfaD hypothetical protein

CGGTACTCAGGAATACTGAAGCCTATACAAAAAAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/197717‑197679
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT  >  REL606/2304413‑2304446
                                                                         
CGGTACTCAGGAATACTGAAGCCTATACAAAAAAA                                        >  1:7166545/1‑35
CGGTACTCAGGAATACTGAAGCCTATACAAAAAAA                                        >  1:8995270/1‑35
CGGTACTCAGGAATACTAAAGCCTATACAAAAAAA                                        <  1:19833169/35‑1
 GGTACTCAGGAATACTGAAGCCTATACAAAAAAAA                                       >  1:947479/1‑35
 GGTACTCAGGAATACTGAAGCCTATACAAAAAAAA                                       >  1:16623149/1‑35
 GGTACTCAGGAATACTGAAGCCTATACAAAAAAAA                                       >  1:11012390/1‑35
 GGTACTCAGGAATACTGAAGCCTATACAAAAAAAA                                       <  1:16740081/35‑1
  GTACTCAGGAATACTGAAGCCTATACAAAAAAAAN                                      >  1:7233443/1‑35
  GTACTCAGGAATACTGAAGCCTATACAAAAAAAAG                                      <  1:8773207/35‑1
  GTACTCAGGAATACTGAAGCCTATACAAAAAAAAG                                      >  1:8768323/1‑35
   TACTCAGGAATACTGAAGCCTATACAAAAAAAAGC                                     >  1:7185255/1‑35
   TACTCAGGAATACTGAAGCCTATACAAAAAAAAGC                                     >  1:7490338/1‑35
   TACTCAGGAATACTGAAGCCTATACAAAAAAAAGC                                     <  1:14439403/35‑1
   TACTCAGGAATACTGAAGCCTATACAAAAAAAAGC                                     >  1:12320324/1‑35
   TACTCAGGAATACTGAAGCCTATACAAAAAAAAGC                                     >  1:17074341/1‑35
   TACTCAGGAATACTAAAGCCTATACAAAAAAAAGC                                     <  1:1116596/35‑1
   TACTAAGGAATACTGAAGCCTATACAAAAAAAAGC                                     <  1:12687403/35‑1
    ACTCAGGAATACTGAAGCCTATACAAAAAAAAGCC                                    >  1:7861249/1‑35
    ACTCAGGAATACTGAAGCCTATACAAAAAAAAGCC                                    >  1:3505078/1‑35
    ACTCAGGAATACTGAAGCCTATACAAAAAAAAGCC                                    >  1:3096875/1‑35
                      gTATGCAAAAAAAAGCCATTAAAATTGCTTTGCGC                  <  1:5762618/34‑1
                       TATGCAAAAAAAAGCCATTAAAATTGCTTTGCGCA                 <  1:16130143/35‑1
                       TATGCAAAAAAAAGCCATTAAAATTGCTTTGCGCA                 <  1:9571695/35‑1
                        atgCAAAAAAAAGCCATTAAAATTGCTTTGCGCAT                <  1:1939286/32‑1
                         tgaAAAAAAAAGCCATTAAAATTGCTTTGCGCATG               <  1:15233189/32‑1
                         tgCAAAAAAAAGCCATTAAAATTGCTTTGCGCATG               <  1:493945/33‑1
                         TACAAAAAAAAGCCATTAAAATTGCTTTGCGCATG               <  1:56390/35‑1
                          ACAAAAAAAAGCCATTAAAATTGCTTTGCGCATGC              <  1:3325174/35‑1
                           catAAAAAAGCCATTAAAATTGCTTTGCGCATGCT             <  1:9926192/32‑1
                           aAAAAAAAAGCCATTAAAATTGCTTTGCGCATGCT             <  1:7131981/34‑1
                           CAAGAAAAAGCCATTAAAATTGCTTTGCGCATGCT             <  1:1576256/35‑1
                           CAAGAAAAAGCCATTAAAATTGCTTTGCGCATGCT             <  1:2700574/35‑1
                           CAAAAAAAAGCCATTAAAATTGCTTTGCGCATGCT             <  1:1055887/35‑1
                            atAAAAAAGCCATTAAAATTGCTTTGCGCATGCTG            <  1:19068129/33‑1
                            AAAAAAAAGCCATTAAAATTGCTTTGCGCATGCTG            <  1:14318262/35‑1
                            AAAAAAAAGCCATTAAAATTGCTTTGCGCATGCTG            <  1:19946854/35‑1
                            AAAAAAAAGCCATTAAAATTGCTTTGCGCATGCTG            <  1:13410027/35‑1
                            AAAAAAAAGCCATTAAAATTGCTTTGCGCATGCTG            <  1:881478/35‑1
                             AAAAAAAGCCATTAAAATTGCTTTGCGCATGCTGG           <  1:566140/35‑1
                              gAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGA          <  1:2356368/34‑1
                              AAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGA          <  1:3211537/35‑1
                              AAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGA          <  1:15249443/35‑1
                               AAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAA         <  1:14206558/35‑1
                               AAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAA         <  1:7450172/35‑1
                               AAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAA         <  1:10446970/35‑1
                               AAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAA         <  1:6263576/35‑1
                                AAAAGCCATTAAAATTGCTTTGCGCATGCTGGAAC        <  1:8132584/35‑1
                                AAAAGCCATTAAAATTGCTTTGCGCATGCTGGAAC        <  1:10373714/35‑1
                                 AAAGCCATTAAAATTGCTTTGCGCATGCTGGAACA       <  1:17197062/35‑1
                                 AAAGCCATTAAAATTGCTTTGCGCATGCTGGAACA       <  1:8240542/35‑1
                                 AAAGCCATTAAAATTGCTTTGCGCATGCTGGAACA       <  1:14531123/35‑1
                                 AAAGCCATTAAAATTGCTTTGCGCATGCTGGAACA       <  1:5125465/35‑1
                                 AAAGCCATTAAAATTGCTTTGCGCATGCTGGAACA       <  1:9480672/35‑1
                                  AAGCCATTAAAATTGCTTTGCGCATGCTGGAACAG      <  1:10651958/35‑1
                                  AAGCCATTAAAATTGCTTTGCGCATGCTGGAACAG      <  1:8802555/35‑1
                                  AAGCCATTAAAATTGCTTTGCGCATGCTGGAACAG      >  1:11349645/1‑35
                                  AAGCCATTAAAATTGCTTTGCGCATGCTGGAACAG      >  1:4587283/1‑35
                                  AAGCCATTAAAATTGCTTTGCGCATGCTGGAACAG      <  1:20278790/35‑1
                                  AAGCCATTAAAATTGCTTTGCGCATGCTGGAACAG      <  1:5698664/35‑1
                                   AGCCATTAAAATTGCTTTTCGCATGCTGGAACAGG     >  1:6984188/1‑35
                                   AGCCATTAAAATTGCTTTGCGCATGCTGGAACAGG     >  1:5605454/1‑35
                                   AGCCATTAAAATTGCTTTGCGCATGCTGGAACAGG     >  1:8286060/1‑35
                                    GCCATTAAAATTGCTTTGCGCATGCTGGAACAGGG    <  1:6987158/35‑1
                                    GCCATTAAAATTGCTTTGCGCATGCTGGAACAGGG    <  1:6812338/35‑1
                                    GCCATTAAAATTGCTTTGCGCATGCTGGAACAGGG    >  1:20411134/1‑35
                                    GCCATTAAAATTGCTTTGCGCATGCTGGAACAGGG    >  1:8682091/1‑35
                                     CCATTAAAATTTCTTTGCGCATGCTGGAACAGGGC   >  1:17361915/1‑35
                                     CCATTAAAATTGCTTTGCGCATGCTGGAACAGGGC   <  1:18195132/35‑1
                                     CCATTAAAATTGCTTTGCGCATGCTGGAACAGGGC   <  1:9426481/35‑1
                                     CCATTAAAATTGCTTTGCGCATGCTGGAACAGGGC   >  1:6700650/1‑35
                                     CCATTAAAATTGCTTTGCGCATGCTGGAACAGGGC   >  1:8436387/1‑35
                                     CCATTAAAATTGCTTTGCGCATGCTGGAACAGGGC   >  1:11605526/1‑35
                                      CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT  >  1:10196631/1‑35
                                      CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT  >  1:11291901/1‑35
                                      CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT  <  1:7515625/35‑1
                                      CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT  >  1:15056724/1‑35
                                      CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT  <  1:15742561/35‑1
                                      CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT  <  1:16235733/35‑1
                                      CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT  >  1:6529238/1‑35
                                                                         
CGGTACTCAGGAATACTGAAGCCTATACAAAAAAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/197717‑197679
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT  >  REL606/2304413‑2304446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.