New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 734239 = | 59 (0.570) | 18 (0.180) | 6/48 | NT | 29.0% | coding (1021/1284 nt) | gltA | citrate synthase |
? | REL606 | 1556579 = | 29 (0.280) | intergenic (‑104/+298) | ydeN/ydeO | hypothetical protein/predicted DNA‑binding transcriptional acfivator |
CTGGGCACGAAGGATGACCTGCTGGAAGTGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/734272‑734239 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAAGGGAAATAA > REL606/1556579‑1556594 CTGGGCACGAAGGATGACCTGCTGGAAGTGGCTAA > 1:9766914/1‑35 CTGGGCACGAAGGATGACCTGCTGGAAGTGGCTAA > 1:4851503/1‑35 CTGGGCACAAAGGATGACCTGCTGGAAGTGGCTAA > 1:19130757/1‑35 TGGGCACGAAGGATGACCTGCTGGAAGTGGCTAAA > 1:5725825/1‑35 TGGGCACGAAGGATGACCTGCTGGAAGTGGCTAAA > 1:12812535/1‑35 TGGGCACGAAGGATGACCTGCTGGAAGTGGCTAAA > 1:3419595/1‑35 TGGGCACGAAGGATGACCTGCTGGAAGTGGCTAAA > 1:16176944/1‑35 GGGCACGAAGGATGACCTGCTGGAAGTGGCTAAAA > 1:14204160/1‑35 GGCACGAAGGATGACCTGCTGGAAGTGGCTAAAAA > 1:7722065/1‑35 GCACGAAGGATGACCTGCTGGAAGTGGCTAAAAAA > 1:256071/1‑35 CACGAAGGATGACCTGCTGGAAGTGGCTAAAAAga > 1:11515633/1‑33 CACGAAGGATGACCTGCTGGAAGTGGCTAAAAAAA > 1:9510464/1‑35 CACGAAGGATGACCTGCTGGAAGTGGCTAAAAAAA > 1:5806688/1‑35 CACGAAGGATGACCTGCTGGAAGTGGCTAAAAAAA > 1:13001542/1‑35 CACGAAGGATGACCTGCTGGAAGTGGCTAAAAAAA > 1:16940476/1‑35 ACGAAGGATGACCTGCTGGAAGTGGCTAAAAAGAA > 1:15601973/1‑35 ACGAAGGATGACCTGCTGGAAGTGGCTAAAAAAAA > 1:6120905/1‑35 CGAAGGATGACCTGCTGGAAGTGGCTAAAAAAAAa > 1:9095395/1‑34 CGAAGGATGACCTGCTGGAAGTGGCTAAAAAAAAG > 1:17533132/1‑35 AAGGATGACCTGCTGGAAGTGGCTAAAAAAGAGGa > 1:912370/1‑34 AAGGATGACCTGCTGGAAGTGGCTAAAAAAGAGGG > 1:13719390/1‑35 AAGGATGACCTGCTGGAAGTGGCTAAAAAAAGGGG > 1:18182106/1‑35 GATGACCTGCTGGAAGTGGCTAAAAAAAGGGGAAA > 1:12733759/1‑35 GATGACCTGCTGGAAGTGGCTAAAAAAAAGGGAAA > 1:740683/1‑35 GATGACCTGCTGGAAGTGGCTAAAAAAAAAGGAAA > 1:10771/1‑35 ATGACCTGCTGGAAGTGGCTAAAAAAAAGGGAAAa > 1:2789605/1‑34 ATGACCTGCTGGAAGTGGCTAAAAAAAAGGGAAAa > 1:7359520/1‑34 TGACCTGCTGGAAGTGGCTAAAAAAAAGGGAAAaa > 1:8491449/1‑33 GACCTGCTGGAAGTGGCTAAAAAAAAGGGAAAAAA > 1:1525721/1‑35 CTGGGCACGAAGGATGACCTGCTGGAAGTGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/734272‑734239 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAAGGGAAATAA > REL606/1556579‑1556594 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |