New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 42237 | 147 (1.430) | 9 (0.100) | 4/42 | NT | 5.9% | pseudogene (740/885 nt) | caiB | crotonobetainyl‑CoA:carnitineCoA‑transferase; b0038_1 |
? | REL606 | 2742547 = | 160 (1.780) | coding (1555/1827 nt) | hycC | NADH dehydrogenase subunit N |
CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/42201‑42237 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT > REL606/2742547‑2742580 CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTT > 1:1557764/1‑35 CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTT < 1:17573246/35‑1 CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTT > 1:1136634/1‑35 CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTT > 1:18771730/1‑35 CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTT < 1:12923315/35‑1 CGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTC < 1:7223770/35‑1 CGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTC < 1:4087746/35‑1 CGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTC < 1:3431224/35‑1 CGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTC < 1:13884653/35‑1 CGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTC < 1:337090/35‑1 CGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTC > 1:13699805/1‑35 GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCt > 1:11395959/1‑34 GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG < 1:16382378/35‑1 GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG > 1:18595588/1‑35 GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG < 1:13058820/35‑1 GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG < 1:12920108/35‑1 GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG > 1:4258822/1‑35 GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG < 1:5981880/35‑1 GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG < 1:565815/35‑1 AGATTTGTCCGGGGTTATTTTTGAATTTCTCCATg > 1:4878005/1‑34 ATTTTTGAAGTTCGCCATAATGATGAATGGCAGCA < 1:3998121/35‑1 cTTTTGAAATTCGCCATAATGATGAATGGCAGCAG < 1:803359/34‑1 TTTTGAATTTCGCCATAATGATGAATGGCAGCAGC < 1:19001636/35‑1 TTTTGAATTTCGCCATAATGATGAATGGCAGCAGC < 1:6995640/35‑1 TTTTGAAATTCGCCATAATGATGAATGGCAGCAGC < 1:10732423/35‑1 TTTTAAATTTCGCCATAATGATGAATGGCAGCAGC < 1:8179819/35‑1 TTTGAAATTCGCCATAATGATGAATGGCAGCAGCG < 1:16193461/35‑1 TTGAAATTCGCCATAATGATGAATGGCAGCAGCGG < 1:5294730/35‑1 TTGAAATTCGCCATAATGATGAATGGCAGCAGCGG < 1:7247186/35‑1 gGAAATTCGCCATAATGATGAATGGCAGCAGCGGG < 1:12096555/34‑1 aAATTTCGCCATAATGATGAATGGCAGCAGCGGGC < 1:671730/34‑1 GAAATTCGCCATAATGATGAATGGCAGCAGCGGGC < 1:15714091/35‑1 aaaTTCGCCATAATGATGAATGGCAGCAGCGGGCA < 1:773337/32‑1 aaaTTCGCCATAATGATGAATGGCAGCAGCGGGCA < 1:14563348/32‑1 aaTTCGCCATAATGATGAATGGCAGCAGCGGGCAG < 1:3874168/33‑1 aTTCGCCATAATGATGAATGGCAGCAGCGGGCAGG < 1:20302117/34‑1 aTTCGCCATAATGATGAATGGCAGCAGCGGGCAGG < 1:15013642/34‑1 aTTCGCCATAATGATGAATGGCAGCAGCGGGCAGG < 1:16439675/34‑1 TTTCGCCATAATGATGAATGGCAGCAGCGGGCAGG < 1:10806435/35‑1 TTTCGCCATAATGATGAATGGCAGCAGCGGGCAGG < 1:13313985/35‑1 TTTCGCCATAATGATGAATGGCAGCAGCGGGCAGG < 1:20120039/35‑1 TTCGCCATAATGATGAATGGCAGCAGCGGGCAGGC < 1:14178318/35‑1 TTCGCCATAATGATGAATGGCAGCAGCGGGCAGGC < 1:8723924/35‑1 TCGCCATAATGATGAATGGCAGCAGCTGGCAGGCA > 1:16284369/1‑35 TCGCCATAATGATGAATGGCAGCAGCGGGCCGGCA > 1:6699321/1‑35 TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA > 1:12623554/1‑35 TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA > 1:8424072/1‑35 TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA < 1:6614414/35‑1 TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA < 1:2057250/35‑1 TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA < 1:11289865/35‑1 TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA < 1:16878679/35‑1 TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA < 1:18809926/35‑1 CGCCATAATGATGAATGGCAGGAGCGGGCAGGCAA < 1:15858294/35‑1 CGCCATAATGATGAATGGCAGCAGCGGGGAGGCAA > 1:17014804/1‑35 CGCCATAATGATGAATGGCAGCAGCGGGCAGGgca > 1:308626/1‑32 CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA > 1:4194704/1‑35 CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA > 1:11148847/1‑35 CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA < 1:4767619/35‑1 CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA > 1:3071267/1‑35 CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA > 1:2906942/1‑35 CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA < 1:16783929/35‑1 CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA < 1:19292010/35‑1 CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA < 1:18264365/35‑1 CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA < 1:17849212/35‑1 CGCCATAATGATGAAGGGCAGCAGCGGGCAGGCAA < 1:20420459/35‑1 CGCCATAAGGATGAATGGCAGCAGCGGGCAGGCAA > 1:15951629/1‑35 GCCATAATGATGAATGGCAGCAGCGGGCAGGGAAT > 1:19025149/1‑35 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAa > 1:6314685/1‑34 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAa > 1:7369878/1‑34 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT > 1:9942100/1‑35 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT > 1:9026311/1‑35 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT < 1:12679657/35‑1 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT < 1:13303529/35‑1 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT < 1:14199146/35‑1 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT > 1:7987062/1‑35 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT > 1:14541621/1‑35 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT < 1:17450893/35‑1 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT < 1:17590994/35‑1 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT < 1:20433245/35‑1 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT < 1:3221829/35‑1 GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT > 1:4259163/1‑35 GCCATAATGATGAATAGCAGCAGCGGGCAGGCAAT < 1:2592241/35‑1 GCCATAATGATAAATGGCAGCAGCGGGCAGGCAAT < 1:13087907/35‑1 GCCATAATGACGAATGGCAGCAGCGGGCAGGCAAT > 1:5451252/1‑35 CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/42201‑42237 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT > REL606/2742547‑2742580 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |