New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1544434 =52 (0.510)6 (0.060) 4/46 NT 10.0% coding (7/1536 nt) xasA predicted glutamate:gamma‑aminobutyric acid antiporter
?REL606 = 2047872 58 (0.590)coding (1256/1395 nt) wcaM predicted colanic acid biosynthesis protein

Only 100 of 111 total aligned reads displayed.

GTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTC  >  REL606/1544400‑1544468
                                  |                                  
tgaacatttgcaagagacagcagtgtttctttttt                                    >  1:10124884‑M1/35‑35 (MQ=255)
tgaacatttgcaagagacagcagtgtttctttttt                                    <  1:19404331‑M1/1‑1 (MQ=255)
tgaacatttgcaagagacagcagtgtttctttttt                                    >  1:3672904‑M1/35‑35 (MQ=255)
tgaacatttgcaagagacagcagtgtttctttttt                                    >  1:13090731‑M1/35‑35 (MQ=255)
tgaacatttgcaagagacagcagtgtttctttttt                                    <  1:13271622‑M1/1‑1 (MQ=255)
gtgAGCTGCTTAGCTTTACCTGTCTGTACTGATGt                                    >  1:16736296/1‑35 (MQ=255)
gtgAGCTGCTTAGCTTTACCTGTCTGTACTGATGt                                    >  1:18779117/1‑35 (MQ=255)
gtgAGCTGCTTAGCTTTACCTGTCTGTACTGATGt                                    <  1:4343867/35‑1 (MQ=255)
gtgAGCTGCTTAGCTTTACCTGTCTGTACTGATGt                                    >  1:14017073/1‑35 (MQ=255)
gtgAGCTGCTTAGCTTTACCTGTCTGTACTGATGt                                    >  1:7119447/1‑35 (MQ=255)
 tgAGCTGCTTAGCTTTACCTGTCTGTACTGATGTa                                   >  1:16692576/1‑35 (MQ=255)
 tgAGCTGCTTAGCTTTACCTGTCTGTACTGATGTa                                   >  1:17367878/1‑35 (MQ=255)
 ggAGCTGCTTAGCTTTACCTGTCTGTACTGATGTa                                   <  1:359800/34‑1 (MQ=255)
 ggAGCTGCTTAGCTTTACCTGTCTGTACTGATGTa                                   <  1:11705625/34‑1 (MQ=255)
  naGCTGCTTAGCTTTACCTGTCTGTACTGATGTAg                                  >  1:17225541/2‑35 (MQ=255)
  gacctgctTAGCTTTACCTGTCTGTACTGATGTAg                                  <  1:6738992/32‑1 (MQ=255)
  gAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAg                                  >  1:3563697/1‑35 (MQ=255)
   aGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGc                                 <  1:17173261/35‑1 (MQ=255)
   aGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGc                                 <  1:3099315/35‑1 (MQ=255)
   aGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGc                                 <  1:19078981/35‑1 (MQ=255)
    gctgctTAGCTTTACCTGTCTGTACTGATGTAGcc                                <  1:4299709/35‑1 (MQ=255)
    gctgctTAGCTTTACCTGTCTGTACTGATGTAGcc                                >  1:7839363/1‑35 (MQ=255)
    gctgctTAGCTTTACCTGTCTGTACTGATGTAGcc                                <  1:8699891/35‑1 (MQ=255)
    gctgctTAGCTTTACCTGTCTGTACTGATGTAGcc                                <  1:17307890/35‑1 (MQ=255)
      tgctTAGCTTTACCTGTCTGTACTGATGTAGCCat                              >  1:3844319/1‑35 (MQ=255)
       gctTAGCTTTACCTGTCTGTACTGATGTAGCCata                             >  1:15074494/1‑35 (MQ=255)
        ctTAGCTTTACCTGTCTGTACTGATGTAGCCatat                            >  1:10823027/1‑35 (MQ=255)
         ttAGCTTTACCTGTCTGTACTGATGTAGCCAtatt                           >  1:17153256/1‑35 (MQ=255)
         ttAGCTTTACCTGTCTGTACTGATGTAGCCAtatt                           >  1:8592142/1‑35 (MQ=255)
         ttAGCTTTACCTGTCTGTACTGATGTAGCCAtatt                           >  1:743163/1‑35 (MQ=255)
          tAGCTTTACCTGTCTGTACTGATGTAGCCAtatta                          >  1:13948301/1‑35 (MQ=255)
           aGCTTTACCTGTCTGTACTGATGTAGCCAtattat                         >  1:9486891/1‑35 (MQ=255)
             cTTTACCTGTCTGTACTGATGTAGCCATATTATcc                       >  1:3605620/1‑35 (MQ=255)
              tttACCTGTCTGTACTGATGTAGCTATATTATccc                      >  1:17697957/1‑35 (MQ=255)
              tttACCTGTCTGTACTGATGTAGCCATATTATccc                      >  1:10638533/1‑35 (MQ=255)
              tttACCTGTCTGTACTGATGTAGCCATATTATccc                      >  1:3843268/1‑35 (MQ=255)
               ttACCTGTCTGTACTGATGTAGCCATTTTATcccc                     >  1:16604416/1‑35 (MQ=255)
               ttACCTGTCTGTACTGATGTAGCCATATTATcccc                     >  1:9338300/1‑35 (MQ=255)
               ttACCTGTCTGTACTGATGTAGCCATATTATcccc                     >  1:4584082/1‑35 (MQ=255)
                tACCTGTCTGTACTTATGTAGCCATATTATccccc                    >  1:4974486/1‑35 (MQ=255)
                 aCCTGTCTGTACTGATGTAGCCATATTATCCCCCt                   >  1:3983445/1‑35 (MQ=255)
                  ccTGTCTGTACTGATGTAGCCATATTATcccccca                  >  1:3011241/1‑33 (MQ=255)
                  ccTGTCTGTACTGATGTAGCCATATTATCCCCCTa                  >  1:19219686/1‑35 (MQ=255)
                   ctgtctgtACTGATGTAGCCATATTATCCCCCTaa                 >  1:2659886/1‑35 (MQ=255)
                   ctgtctgtACTGATGTAGCCATATTATCCCCCTaa                 >  1:15981580/1‑35 (MQ=255)
                   ctgtctgtACTGATGTAGCCATATTATCCCCCTaa                 >  1:8651313/1‑35 (MQ=255)
                    tgtctgtACTGATGTAGCCATATTATCCCCCTaaa                >  1:4861785/1‑35 (MQ=255)
                    tgtctgtACTGATGTAGCCATATTATCCCCCTaaa                >  1:5395833/1‑35 (MQ=255)
                     gtctttACTGTTTTAGCCATATTATCCCCCTaaaa               <  1:16610622/35‑1 (MQ=21)
                     gtctgtACTGATGTAGCCATATTATCCCCCTaaaa               >  1:14897583/1‑35 (MQ=255)
                      tttgtTCTGTTTTAGCCATATTATCCCCCTAAAAc              <  1:15794691/33‑1 (MQ=21)
                      tttgtGCTGTTTTAGCCATATTATCCCCCTAAAAc              <  1:18775469/33‑1 (MQ=21)
                      tctgtACTTTTTTAGCCATATTATCCCCCTAAAAc              <  1:14518670/35‑1 (MQ=25)
                      tctgtACTGTTTTAGCCATATTATCCCCCTAAAAc              <  1:5354764/35‑1 (MQ=25)
                      tctgtACTGATGTAGCCATATTATCCCCCTAAAAc              >  1:7368891/1‑35 (MQ=255)
                      tctgtACTGATGTAGCCATATTATCCCCCTAAAAc              >  1:6543053/1‑35 (MQ=255)
                      tctgtACTGATGTAGCCATATTATCCCCCTAAAAc              >  1:17568710/1‑35 (MQ=255)
                       ctgtACTGATGTAGCCATATTATCCCCCTAAAACg             >  1:14705718/1‑35 (MQ=255)
                        tgtATTGTTTTAGCCATATTATCCCCCTAAAACgg            <  1:777587/35‑1 (MQ=25)
                        tgtACTGATGTAGCCATATTATCCCCCTAAAACgg            >  1:536711/1‑35 (MQ=255)
                        tgtACTGATGTAGCCATATTATCCCCCTAAAACgg            >  1:6640614/1‑35 (MQ=255)
                         tttctttttTAGCCATATTATCCCCCAAAAACGGt           >  1:4786350‑M1/10‑35 (MQ=255)
                         gttctttttTAGCCATATTATCCCCCTAAAACGGt           >  1:15838269‑M1/10‑35 (MQ=255)
                         gttctgtttTAGCCATATTATCCCCCTAAAACGGt           >  1:15152720‑M1/10‑35 (MQ=255)
                         gtACTGATTTAGCCATATTATCCCCCTAAAACGGt           <  1:3733874/35‑1 (MQ=255)
                         gtACTGATGTAGCCATATTATCCCCCTACAACgat           >  1:13276364/1‑33 (MQ=255)
                         gtACTGATGTAGCCATATTATCCCCCTAAAACGGt           >  1:3935237/1‑35 (MQ=255)
                          ttctttttTAGCCATATTATCCCCCTAAAACGGTa          >  1:3621773‑M1/9‑35 (MQ=255)
                          tACTGATGTAGCCATATTATCCCCCTAAAACGGTa          >  1:7032460/1‑35 (MQ=255)
                           tctgtttTAGCCATATTATCCCCCTAAAACGGTAt         >  1:2886619‑M1/8‑35 (MQ=255)
                           aCTGTTGTAGCCATATTATCCCCCTAAAACGGTAt         <  1:9321989/35‑1 (MQ=255)
                           aCTGATGTAGCCATATTATCCCCCTAAAACTGTAt         >  1:5823997/1‑35 (MQ=255)
                           aCTGATGTAGCCATATTATCCCCCTAAAACGGTAt         <  1:13843063/35‑1 (MQ=255)
                            ctttttTAGCCATATTATCCCCCTAAAACGGTAtt        >  1:20066751‑M1/7‑35 (MQ=255)
                             tgtttTAGCCATATTATCCCCCTAAAACGGTATTc       >  1:13186541‑M1/6‑35 (MQ=255)
                             tgtttTAGCCATATTATCCCCCTAAAACGGTATTc       >  1:16183324‑M1/6‑35 (MQ=255)
                             tgtttTAGCCATATTATCCCCCTAAAACGGTATTc       >  1:19918918‑M1/6‑35 (MQ=255)
                             tGATGTAGCCATATTATCCCCCTAAAACGGTATTc       >  1:16812892/1‑35 (MQ=255)
                              ttttTAGCCATATTATCCCCCTAAAACGGTATTcc      >  1:2178936‑M1/5‑35 (MQ=255)
                              gtttTAGCCATATTATCCCCCTAAAACGGTATTcc      >  1:18057194‑M1/5‑35 (MQ=255)
                              gttGTAGCCATATTATCCCCCTAAAACGGTATTcc      <  1:15281242/33‑1 (MQ=255)
                              gATGTAGCCATATTATCCCCCTAAAACGGTATTcc      >  1:17355413/1‑35 (MQ=255)
                              gATGTAGCCATATTATCCCCCTAAAACGGTATTcc      >  1:19554743/1‑35 (MQ=255)
                              gATGTAGCCATATTATCCCCCTAAAACGGTATTcc      >  1:2748890/1‑35 (MQ=255)
                               tttTAGCCATATTATCCCCCTAAAACGGTATTCCt     >  1:14180048‑M1/4‑35 (MQ=255)
                               aTGTAGCCATATTATCCCCCTAAAACGGTATTCCt     >  1:20148371/1‑35 (MQ=255)
                               aTGTAGCCATATTATCCCCCTAAAACGGTATTCCt     >  1:15510738/1‑35 (MQ=255)
                               aTGTAGCCATATTATCCCCCTAAAACGGTATTCCt     >  1:11090547/1‑35 (MQ=255)
                               aTGTAGCCATATTATCCCCCTAAAACGGTATTCCt     >  1:40370/1‑35 (MQ=255)
                                ttTAGCCATATTATCCCCCTAAAACGGTATTCCTg    >  1:7324920‑M1/3‑35 (MQ=255)
                                tGTAGCCATATTATCCCCCTAAAACGGTATTCCTg    >  1:12359066/1‑35 (MQ=255)
                                 gTAGCCATATTATCCCCCTAAAACGGTATTCCTGt   >  1:19346497/1‑35 (MQ=255)
                                 gTAGCCATATTATCCCCCTAAAACGGTATTCCTGt   >  1:1752464/1‑35 (MQ=255)
                                  TAGCCATATTATCCCCCTAAAACGGTATTCCTGTc  >  1:6259154‑M1/1‑35 (MQ=255)
                                  TAGCCATATTATCCCCCTAAAACGGTATTCCTGTc  >  1:14680106‑M1/1‑35 (MQ=255)
                                  TAGCCATATTATCCCCCTAAAACGGTATTCCTGTc  >  1:13599226‑M1/1‑35 (MQ=255)
                                  TAGCCATATTATCCCCCTAAAACGGTATTCCTGTc  >  1:7950048‑M1/1‑35 (MQ=255)
                                  TAGCCATATTATCCCCCTAAAACGGTATTCCTGTc  >  1:4901005‑M1/1‑35 (MQ=255)
                                  TAGCCATATTATCACCCTAAAACGGTATTCCTGTc  >  1:16836517‑M1/1‑35 (MQ=255)
                                  TAGCCATATTATCACCCTAAAACGGTATTCCTGTc  >  1:14637318‑M1/1‑35 (MQ=255)
                                  |                                  
GTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTC  >  REL606/1544400‑1544468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.