New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1072149 | 74 (0.720) | 4 (0.040) | 3/42 | NT | 4.8% | coding (320/2745 nt) | torS | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
? | REL606 | 3712714 = | 106 (1.030) | coding (451/684 nt) | ECB_03459 | conserved hypothetical protein |
CGGGAGATCTCCTGCTCCTGTTGTTCAATAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1072116‑1072149 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGAAAAACCT > REL606/3712714‑3712725 ||| CGGGAGATCTCCTGCTCCTGTTGTTCAATAGCGGG > 1:9933658/1‑35 CGGGAGATCTCCTGCTCCTGTTGTTCAATAGCGGG > 1:12991233/1‑35 GGGAGATCTCCTGCTCCTGTTGTTCAATAGCGGGG > 1:9198640/1‑35 GGGAGATCTCCTGCTCCTGTTGTTCAATAGCGGGG > 1:2197527/1‑35 GGGAGATCTCCTGCTCCTGTTGTTCAATAGCGGGG > 1:17598033/1‑35 GGAGATCTCCTGCTCCTGTTGTTCAATAGCGGGGG > 1:8162066/1‑35 GAGATCTCCTGCTCCTGTTGTTCAATAGCTGGGGt > 1:4028011/1‑34 GAGATCTCCTGCTCCTGTTGTTCAATAGCGGGGGG > 1:15178854/1‑35 AGATCTCCTGCTCCTGTTGTTCAATAGCGGGGGGG > 1:18625880/1‑35 AGATCTCCTGCTCCTGTTGTTCAATAGCGGGGGGG > 1:17059404/1‑35 AGATCTCCTGCTCCTGTTGTTCAATAGCGGGGGGG > 1:16736409/1‑35 GATCTCCTGCTCCTGTTGTTCAATAGCGGTGGGGT > 1:1102640/1‑35 GATCTCCTGCTCCTGTTGTTCAATAGCGGGGGGGT > 1:3747025/1‑35 ATCTCCTGCTCCTGTTGTTCAATAGCGGGGGGGgt > 1:10350192/1‑33 ATCTCCTGCTCCTGTTGTTCAATAGCGGGGGGGTt > 1:17586656/1‑34 CTGCTCCTGTTGTTCAATAGCGGGGGGGTTAAAAA > 1:20180195/1‑35 GCTCCTGTTGTTCAATAGCGGGGGGGTGAAAAACC > 1:899909/1‑35 GCTCCTGTTGTTCAATAGCGGGGGGGGGAAAAACC > 1:16091670/1‑35 CTCCTGTTGTTCAATAGCGGGGGGGTGAAAAACCT > 1:6755369/1‑35 ||| CGGGAGATCTCCTGCTCCTGTTGTTCAATAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1072116‑1072149 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGAAAAACCT > REL606/3712714‑3712725 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |