New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1145450 | 100 (0.970) | 8 (0.100) | 4/36 | NT | 10.0% | intergenic (‑15/‑140) | flgA/flgB | flagellar basal body P‑ring biosynthesis protein A/flagellar basal‑body rod protein B |
? | REL606 | = 3613817 | 69 (0.900) | coding (1255/1950 nt) | yhjK | predicted diguanylate cyclase |
CCACGCTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1145411‑1145450 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaCAGGTCGAGATGACCAGCGGTAAACTGGTCAGTG < REL606/3613817‑3613784 CCACGCTACGTTTTATTATCAGCATTTTCGCCCCC > 1:20611451/1‑35 CCACGCTACGTTTTATTATCAGCATTTTCGCCCCC > 1:5458719/1‑35 CCACGCTACGTTTTATTATCAGCATTTTCGCCCCC > 1:2095500/1‑35 CCACGCTACGTTTTATTATCAGCATTTTCGCCCCC > 1:19930627/1‑35 CACGCTACGTTTTATTATCAGCATTTTCGCCCCCA > 1:15692998/1‑35 CACGCTACGTTTTATTATCAGCATTTTCGCCCCCA < 1:18979981/35‑1 ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG < 1:15206029/35‑1 ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG > 1:14460504/1‑35 ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG < 1:1413090/35‑1 ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG > 1:6786419/1‑35 ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG < 1:7567780/35‑1 ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG > 1:4495391/1‑35 ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG > 1:8444740/1‑35 ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG < 1:3745178/35‑1 ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG > 1:17469295/1‑35 ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG > 1:1952671/1‑35 ACGCTACGTTTTATTATCAGCATTTTCGACCCCAG < 1:5705020/35‑1 CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC > 1:5633765/1‑35 CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC > 1:175815/1‑35 CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC < 1:18401008/35‑1 CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC > 1:6747868/1‑35 CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC > 1:14149553/1‑35 CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC > 1:7414008/1‑35 CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC < 1:8268338/35‑1 CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC > 1:11239937/1‑35 CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC > 1:312920/1‑35 GCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC < 1:3832916/35‑1 GCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC > 1:2231038/1‑35 GCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC > 1:3288261/1‑35 GCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC > 1:5609996/1‑35 GCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC < 1:8742543/35‑1 CTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA < 1:8261194/35‑1 CTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA < 1:4074734/35‑1 gcTTTTCGCCCCCAGCCACAGGTCGAGATGACCAG < 1:2976972/33‑1 tTTTTCCCCCCCAGCCACAGGTCGAGATGACCAGC < 1:18138525/34‑1 cTTTTCCCCCCCAGCCACAGGTCGAGATGACCAGC < 1:3456711/34‑1 TTTTCCCCCCCAGCCACAGGTCGAGATGACCAGCG < 1:5227241/35‑1 TTTCCCCCCCAGCCACAGGTCGAGATGACCAGCGG < 1:14765201/35‑1 cTCGCCCCCAGCCACAGGTCGAGATGACCAGCGGT < 1:9844940/34‑1 TTCGCCCCCAGCCACAGGTCGAGATGACCAGCGGT < 1:3871715/35‑1 tccCCCCCAGCCACAGGTCGAGATGACCAGCGGTA < 1:15258991/32‑1 tccCCCCCAGCCACAGGTCGAGATGACCAGCGGTA < 1:11139360/32‑1 ccCCCCCAGCCACAGGTCGAGATGACCAGCGGTAA < 1:1663014/33‑1 CGCTCCCAGCCACAGGTCGAGATGACCAGCGGTAA < 1:5267305/35‑1 cCCCCCAGCCACAGGTCGAGATGACCAGCGGTAAA < 1:6472871/34‑1 cCCCCCAGCCACAGGTCGAGATGACCAGCGGTAAA < 1:1139372/34‑1 cCCCCCAGCCACAGGTCGAGATGACCAGCGGTAAA < 1:9341412/34‑1 aCCCCCAGCCACAGGTCGAGATGACCAGCGGTAAA < 1:10148076/34‑1 CCCCCAGCCACAGGTCGAGATGACCAGCGGTAAAC < 1:11272368/35‑1 CCCCCAGCCACAGGTCGAGATGACCAGCGGTAAAC < 1:8867781/35‑1 CCCCCAGCCACAGGTCGAGATGACCAGCGGTAAAC < 1:8329763/35‑1 CCCCCAGCCACAGGTCGAGATGACCAGCGGTAAAC < 1:4234132/35‑1 CCCCAGCCACAGGTCGAGATGACCAGCGGTAAACT < 1:8356968/35‑1 CCCCAGCCACAGGTCGAGATGACCAGCGGTAAACT < 1:16577309/35‑1 CCCAGCCACAGGTCGAGATGACCAGCGGTAAACTG < 1:2845872/35‑1 CCAGCCACAGGTCGAGATGACCAGCGGTAAACTGG < 1:9601908/35‑1 CCAGCCACAGGTCGAGATGACCAGCGGTAAACTGG < 1:18163114/35‑1 CAGCCACAGGTCGAGATGACCAGCGGTAAAATGGT > 1:13628533/1‑35 CAGCCACAGGTCGAGATGACCAGCGGTAAAATGGT > 1:6897450/1‑35 AGCCACAGGTCGAGATGACCAGCTGTAAACTGGTC > 1:7027816/1‑35 AGCCACAGGTCGAGATGACCAGCGGTAAACTGGTC < 1:3723687/35‑1 AGCCACAGGTCGAGATGACCAGCGGTAAACTGGTC > 1:5377387/1‑35 AGCCACAGGTCGAGATGACCAGCGGTAAACTGGTC < 1:17130524/35‑1 AGCCACAGGTCGAGATGACCAGCGGTAAACTGGTC < 1:11405897/35‑1 AGCCACAGGTCGAGATGACCAGCGGTAAACTGGTC > 1:15376374/1‑35 AGCCACAGGTCGAGATGACCAGCGGGAAACTGGTC > 1:385226/1‑35 AGCCACAGGTCGAGATGACCAGCGGGAAACTGGTC > 1:11420197/1‑35 AGCCACAGGTCGAGATGACCAGCGGGAAACTGGTC > 1:11620837/1‑35 GCCACAGGTCGAGATGACCAGCGGTAAACTGGTCA < 1:7735430/35‑1 GCCACAGGTCGAGATGACCAGCGGTAAACTGGTCA < 1:15296884/35‑1 GCCACAGGTCGAGATGACCAGCGGTAAACTGGTCA < 1:13623530/35‑1 GCCACAGGTCGAGATGACCAGCGGTAAACTGGTCA < 1:18945157/35‑1 GCCACAGGTCGAGATGACCAGCGGTAAACTGGTCA < 1:20185828/35‑1 GCCACAGGTCGAGATGACCAGCGGGAAACTGGTCA > 1:20168428/1‑35 CCACAGGTCGAGATGACCAGCGGTAAACTGGTCAG < 1:5996164/35‑1 CCACAGGTCGAGATGACCAGCGGTAAACTGGTCAG < 1:15419607/35‑1 CCACAGGTCGAGATGACCAGCGGTAAACTGGTCAG > 1:2342955/1‑35 CCACAGGTCGAGATGACCAGCGGTAAACTGGTCAG < 1:4176129/35‑1 CACAGGTCGAGATGACCAGCGGTAAACTGGTCAGT < 1:13664452/35‑1 CACAGGTCGAGATGACCAGCGGTAAACTGGTCAGT < 1:2093270/35‑1 CACAGGTCGAGATGACCAGCGGTAAACTGGTCAGT < 1:16560975/35‑1 CACAGGTCGAGATGACCAGCGGTAAACTGGTCAGT < 1:5629024/35‑1 ACAGGTCGAGATGACCAGCGGTAAACTGGTCAGTG > 1:13202349/1‑35 ACAGGTCGAGATGACCAGCGGTAAACTGGTCAGTG < 1:17822454/35‑1 ACAGGTCGAGATGACCAGCGGTAAACTGGTCAGTG < 1:2730403/35‑1 CCACGCTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1145411‑1145450 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaCAGGTCGAGATGACCAGCGGTAAACTGGTCAGTG < REL606/3613817‑3613784 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |