New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3600745 = | 41 (0.400) | 9 (0.120) | 3/34 | NT | 18.7% | intergenic (+12/+39) | treF/yhjB | cytoplasmic trehalase/predicted DNA‑binding response regulator in two‑component regulatory system |
? | REL606 | 3792210 = | 49 (0.670) | coding (316/414 nt) | ECB_03532 | hypothetical protein |
GAAGAGGATAATTTTACAGCCAGCAGGAAGTTAGCGGCTGG‑‑‑‑‑‑‑‑‑‑ < REL606/3600785‑3600745 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctggGTGGGGGAAA > REL606/3792210‑3792219 GAAGAGGATAATTTTACAGCCAGCAGGAAGTTAGC > 1:6291826/1‑35 GAAGAGGATAATTTTACAGCCAGCAGGAAGTTAGC > 1:5163961/1‑35 GAAGAGGATAATTTTACAGCCAGCAGGAAGTTAGC > 1:15175551/1‑35 AAGAGGATCATTTTACAGCCAGCAGGAAGTTAGCG > 1:17022407/1‑35 AAGAGGATAATTTTACAGCCAGCAGGAAGTTAGCG > 1:7017935/1‑35 AAGAGGATAATTTTACAGCCAGCAGGAAGTTAGCG > 1:19078316/1‑35 AAGAGGATAATTTTACAGCCAGCAGGAAGTTAGCG > 1:15206711/1‑35 AAGAGGATAATTTTACAGCCAGCAGGAAGTTAGCG > 1:15656196/1‑35 AAGAGGATAATTTTACAGCCAGCAGGAAGTTAGCG > 1:17042179/1‑35 AGAGGATAATTTTACAGCCAGCATGAAGTTAGCGG > 1:20517360/1‑35 AGAGGATAATTTTACAGCCAGCAGGAAGTTAGCGG > 1:4395066/1‑35 AGAGGATAATTTTACAGCCAGCAGGAAGTTAGCGG > 1:4117178/1‑35 AGGATAATTTTACAGCCAGCAGGAAGTTAGCGGCT > 1:18298140/1‑35 GGATAATTTTACAGCCAGCAGGAAGTTAGCGGCTG > 1:11300476/1‑35 GGATAATTTTACAGCCAGCAGGAAGTTAGCGGCTG > 1:11438645/1‑35 GATAATTTTACAGCCAGCAGGAAGTTAGCGGCTGG > 1:3429137/1‑35 ATAATTTTACAGCCAGCAGGAAGTTAGCGGCTGGG > 1:11960457/1‑35 ATAATTTTACAGCCAGCAGGAAGTTAGCGGCTGGG > 1:14859057/1‑35 AATTTTACAGCCAGCAGGAAGTTAGCGGCTGGGgg > 1:13270661/1‑33 ATTTTACAGCCAGCAGGAAGTTAGCGGCTGGGTGG > 1:3805542/1‑35 TTTTACAGCCAGCAGGAAGTTAGCGGCTGGGTGGG > 1:17291307/1‑35 TTTTACAGCCAGCAGGAAGTTAGCGGCTGGGTGGG > 1:17511086/1‑35 TTTTACAGCCAGCAGGAAGTTAGCGGCTGGGTGGG > 1:1828605/1‑35 TTTTACAGCCAGCAGGAAGTTAGCGGCTGGGGGGG > 1:3284442/1‑35 TTTACAGCCAGCAGGAAGTTAGCGGCTGGGTGGGG > 1:15179166/1‑35 TTTACAGCCAGCAGGAAGTTAGCGGCTGGCTGGGG > 1:16482691/1‑35 ACAGCCAGCAGGAAGTTAGCGGCTGGGTGGGGGAA > 1:18986811/1‑35 ACAGCCAGCAGGAAGTTAGCGGCTGGGTGGGGGAA > 1:7128610/1‑35 ACAGCCAGCAGGAAGTTAGCGGCTGGGTGGGGAAA > 1:4584055/1‑35 ACAGCCAGCAGGAAGTTAGCGGCTGGGTGGGGAAA > 1:11500917/1‑35 CAGCCAGCAGGAAGTTAGCGGCTGGGTGGGGGAAA > 1:18383786/1‑35 CAGCCAGCAGGAAGTTAGCGGCTGGGTGGGGAAAA > 1:251892/1‑35 CAGCCAGCAGGAAGTTAGCGGCTGGCTGGGGGAAA > 1:19324930/1‑35 GAAGAGGATAATTTTACAGCCAGCAGGAAGTTAGCGGCTGG‑‑‑‑‑‑‑‑‑‑ < REL606/3600785‑3600745 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctggGTGGGGGAAA > REL606/3792210‑3792219 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |