New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 312869 =100 (0.970)13 (0.150) 6/40 NT 13.5% coding (56/951 nt) yahI predicted carbamate kinase‑like protein
?REL606 4351443 = 83 (0.970)intergenic (+51/‑87) groEL/yjeI chaperonin GroEL/hypothetical protein

Only 100 of 221 total aligned reads displayed.

AGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGAT  >  REL606/4351409‑4351477
                                  |                                  
tctttgccgtcatccagcagctttttacggctggg                                    >  1:7355330‑M2/34‑35 (MQ=255)
tctttgccgtcatccagcagctttttacggctggg                                    >  1:14310074‑M2/34‑35 (MQ=255)
accgcctccgcctgatgctcaatcgactggctggg                                    >  1:18224127‑M2/35‑35 (MQ=255)
aaaaagtgtgctaatctgctctccgttcggctggg                                    >  1:19953655‑M2/34‑35 (MQ=255)
aaaaagtgtgctaatctgccctccgttcggctggg                                    >  1:2394914‑M2/34‑35 (MQ=255)
 gAAATAAACAAACCCCCGGGCAGAAATGTCTgggg                                   >  1:9538502/1‑35 (MQ=255)
 gAAATAAACAAACCCCCGGGCAGAAATGTCTgggg                                   <  1:3012224/35‑1 (MQ=255)
 aaaagtgtgctaatctgccctccgttcggctgggt                                   >  1:12114168‑M2/33‑34 (MQ=255)
 aaaagtgtgctaatctgccctccgttcggctgggg                                   >  1:314237‑M2/33‑35 (MQ=255)
 aaaagtgtgctaatctgccctccgttcggctgggg                                   >  1:1183860‑M2/33‑35 (MQ=255)
  cgcctccgcctgatgctcaatcgactggctggggg                                  >  1:5882290‑M2/33‑35 (MQ=255)
  aaagtgtgctaatctgccctccgttcggctggggt                                  >  1:6831891‑M2/32‑34 (MQ=255)
  aaagtgtgctaatctgccctccgttcggctggggg                                  >  1:6602774‑M2/32‑35 (MQ=255)
  aaaTAAACAAACCCCCGGGCAGAAATGTCTggggg                                  <  1:18716801/35‑1 (MQ=255)
  aaaTAAACAAACCCCCGGGCAGAAATGTCTggggg                                  <  1:8934843/35‑1 (MQ=255)
   ttgccgtcatccagcagctttttacggctgGGGGt                                 >  1:1204213‑M2/31‑35 (MQ=255)
   ggcggcggaagggcatatttttggtggctgggggg                                 >  1:12195956‑M2/31‑34 (MQ=255)
   aagtgtgctaatctgccctccgttcggctggggtt                                 >  1:5410414‑M2/31‑33 (MQ=255)
   aagtgtgctaatctgccctccgttcggctgGGTGt                                 >  1:15280077‑M2/31‑35 (MQ=255)
   aagtgtgctaatctgccctccgttcggctgGGGGt                                 >  1:15706328‑M2/31‑35 (MQ=255)
   aaTAAACAAACCCCCGGGCAGAAATGTCTgtgggg                                 >  1:19153997/1‑34 (MQ=255)
   aaTAAACAAACCCCCGGGCAGAAATGTCTGGGGGt                                 <  1:4069570/35‑1 (MQ=255)
    tgccgtcatccagcagctttttacggctggggagt                                >  1:11345337‑M2/30‑32 (MQ=255)
    agtgtgctaatctgccctccgttcggctgGGGTtt                                >  1:10071096‑M2/30‑35 (MQ=255)
     tAAACAAACCCCCGGGCAGAAATGTCTGGGGGttt                               >  1:18586768/1‑35 (MQ=255)
     gtgtgctaatctgccctccgttcggctgGGTGttt                               >  1:4646702‑M2/29‑35 (MQ=255)
     gccgtcatccagcagctttttacggctgGGGGttt                               >  1:3890468‑M2/29‑35 (MQ=255)
     ctccgcctgatgctcaatcgactggctggGGTttt                               >  1:10763399‑M2/30‑35 (MQ=255)
     ctccgcctgatgctcaatcgactggctggGGGttt                               >  1:7393671‑M2/30‑35 (MQ=255)
     ctccgcctgatgctcaatcgactggctggGGGttt                               >  1:6734916‑M2/30‑35 (MQ=255)
     cggcggaagggcatatttttggtggctgGGGGgtt                               >  1:19740305‑M2/29‑35 (MQ=255)
     cggcggaagggcatatttttggtggctgGGGGgtt                               >  1:19443172‑M2/29‑35 (MQ=255)
      tgtgctaatctgccctccgttcggctgGGTGtttt                              >  1:10508596‑M2/28‑35 (MQ=255)
      tccgcctgatgctcaaccgactggctggGGGtttt                              >  1:3792629‑M2/29‑35 (MQ=255)
      ggcggaagggcatatttttggtggctgGGGGgttt                              >  1:6150378‑M2/28‑35 (MQ=255)
      ggcggaagggcatatttttggtggctgGGGGgttt                              >  1:9153661‑M2/28‑35 (MQ=255)
      ggcggaagggcatatttttggtggctgGGGGgttt                              >  1:7550784‑M2/28‑35 (MQ=255)
      ggcggaagggcatatttttggtggctgGGGGattt                              >  1:7299187‑M2/28‑35 (MQ=255)
      ggcggaagggcatatttttggtggctgGGGAtttt                              >  1:1315891‑M2/28‑35 (MQ=255)
      aaacaaacCCCCGGGCAGAAATGTCTGGGGGtttt                              <  1:18954604/35‑1 (MQ=255)
       gcggaagggcatatttttggtggctgGGGGttttt                             >  1:18550005‑M2/27‑35 (MQ=255)
       ccgcctgatgctcaatcgactggctggGGGtattt                             >  1:3685957‑M2/28‑35 (MQ=255)
       aacaaacCCCCGGGCAGAAATGTCTGGGGGttttt                             >  1:10320146/1‑35 (MQ=255)
        gtcatccagcagctttttacggctgGGGgtttttt                            >  1:17892549‑M2/26‑34 (MQ=255)
        cggaagggcatatttttggtggctgGGGgtttttt                            >  1:4112033‑M2/26‑34 (MQ=255)
        cggaagggcatatttttggtggctgGGGggttttt                            >  1:1766910‑M2/26‑34 (MQ=255)
         tcatccagcagctttttacggctgGgggttttatt                           >  1:2752370‑M2/25‑32 (MQ=255)
         ggaagggcatatttttggtggctgGGggttttttt                           >  1:1805405‑M2/25‑33 (MQ=255)
         caaacCCCCGGGCAGAAATGTCTGGGGGTTTTTCt                           <  1:12453575/35‑1 (MQ=255)
         caaacCCCCGGGCAGAAATGTCTGGGGGTTTTTCt                           <  1:13066436/35‑1 (MQ=255)
          gaagggcatatttttggtggctgGGGGTTTTTTtt                          >  1:17528116‑M2/24‑35 (MQ=255)
          cctgatgctcaatcgactggctggGGGTTTTTTtt                          >  1:14517769‑M2/25‑35 (MQ=255)
          aaacCCCCGGGCAGAAATGTCTGGGGGTTTTTCtt                          <  1:1420451/35‑1 (MQ=255)
          aaacCCCCGGGCAGAAATGTCTGGGGGTTTTTCtt                          <  1:16726644/35‑1 (MQ=255)
           aagggcatatttttggtggctgGGGGTTTTTTttt                         >  1:2435610‑M2/23‑35 (MQ=255)
            acCCCCGGGCAGAAATGTCTGGGGGTTTTTCtttt                        <  1:3759054/35‑1 (MQ=255)
            acCCCCGGGCAGAAATGTCTGGGGGTTTTTCtttt                        >  1:19581405/1‑35 (MQ=255)
            aatctgccctccgttcggctgGGTGTTTTTCtttt                        >  1:2005270‑M2/22‑35 (MQ=255)
             cccccGGGCAGAAATGTCTGGGGGTTTTTCTTTTg                       >  1:8430976/1‑35 (MQ=255)
             ccagcagctttttacggctgGGGGTTTTTTTTTTg                       >  1:3740673‑M2/21‑35 (MQ=255)
              ccccGGTCAGAAATGTCTGGGGGTTTTTCTTTTgg                      >  1:8065101/1‑35 (MQ=255)
              ccccGGGCAGAAATGTCTGGGGGTTTTTCTTTTgg                      >  1:11829115/1‑35 (MQ=255)
               cccGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGt                     <  1:1231017/35‑1 (MQ=255)
               cccGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGt                     >  1:17238664/1‑35 (MQ=255)
                ccGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTc                    <  1:12700336/35‑1 (MQ=255)
                 cGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCa                   <  1:12795714/35‑1 (MQ=255)
                 cGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCa                   >  1:8780407/1‑35 (MQ=255)
                 cGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCa                   <  1:5546740/35‑1 (MQ=255)
                 cGGGCAGAAATATCTGGGGGTTTTTCTTTTGGTCa                   >  1:6764/1‑35 (MQ=255)
                  gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                  >  1:14740/1‑35 (MQ=255)
                  gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                  >  1:10356424/1‑35 (MQ=255)
                  gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                  >  1:14236542/1‑35 (MQ=255)
                  gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                  <  1:19400077/35‑1 (MQ=255)
                  gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                  <  1:16187634/35‑1 (MQ=255)
                  gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                  <  1:563567/35‑1 (MQ=255)
                  gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                  <  1:11969855/35‑1 (MQ=255)
                  gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                  >  1:13794182/1‑35 (MQ=255)
                   ggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATc                 <  1:14835781/35‑1 (MQ=255)
                       gAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTc             <  1:518911/35‑1 (MQ=255)
                       gAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTc             <  1:14001347/35‑1 (MQ=255)
                       gAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTc             >  1:8556186/1‑35 (MQ=255)
                       gAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTc             >  1:3250585/1‑35 (MQ=255)
                        aaaTGTCTGGGGGTTTTTCTTTTGGTCATCTTTCt            <  1:17354580/35‑1 (MQ=255)
                         aaTGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTa           >  1:585680/1‑35 (MQ=255)
                         aaTGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTa           <  1:6022165/35‑1 (MQ=255)
                         aaTGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTa           >  1:4310943/1‑35 (MQ=255)
                         aaTGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTa           <  1:705313/35‑1 (MQ=255)
                         aaTGTCTGGGGGGTTTTCTTTTGGTCATCTTTCTa           >  1:7604355/1‑35 (MQ=255)
                          aTGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAg          >  1:997888/1‑35 (MQ=255)
                           tGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGt         <  1:19516872/35‑1 (MQ=255)
                            gTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGta        <  1:1704285/35‑1 (MQ=255)
                            gTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGta        >  1:9626487/1‑35 (MQ=255)
                                gGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAg    <  1:16320942‑M2/34‑1 (MQ=255)
                                gGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAg    >  1:15891834‑M2/2‑35 (MQ=255)
                                 gGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGa   >  1:4410676‑M2/2‑35 (MQ=255)
                                 gGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGa   <  1:3626134‑M2/34‑1 (MQ=255)
                                 gGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGa   <  1:20532346‑M2/34‑1 (MQ=255)
                                 gGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGa   >  1:14595200‑M2/2‑35 (MQ=255)
                                 gGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGa   >  1:1344165‑M2/2‑35 (MQ=255)
                                  gggTTTTTCTTTTGGTCATCTTTCTAGTATAAGAt  <  1:16533061/35‑1 (MQ=255)
                                  |                                  
AGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGAT  >  REL606/4351409‑4351477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.