New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1924695 = | 91 (0.890) | 6 (0.100) | 3/28 | NT | 9.9% | coding (52/612 nt) | ruvA | Holliday junction DNA helicase motor protein |
? | REL606 | = 2696376 | 56 (0.930) | coding (277/2145 nt) | nrdE | ribonucleotide‑diphosphate reductase alpha subunit |
Only 100 of 187 total aligned reads displayed.
AGCACTTCATAGCCTACGCCGCCCACTTCAATTAACACCAGCGGGGGTTGTTTTTCAATGATGATGCCT > REL606/1924661‑1924729 | cgcgactttgtcattacgctgtttgcccacgcaca > 1:13832680‑M1/35‑35 (MQ=255) cgcgactttgtcattacgctgtttgcccacgcaca < 1:2446258‑M1/1‑1 (MQ=255) cgcgactttgtcattacgctgtttgcccacgcaca > 1:15174883‑M1/35‑35 (MQ=255) cgcgactttgtcattacgctgtttgcccacgcaca < 1:5699525‑M1/1‑1 (MQ=255) cgcgactttgtcattacgctgtttgcccacgcaca < 1:1860485‑M1/1‑1 (MQ=255) cgcgactttgtcattacgctgtttgcccacgcaca > 1:8077655‑M1/35‑35 (MQ=255) cgcgactttgtcattacgctgtttgcccacgcaca < 1:16854158‑M1/1‑1 (MQ=255) gCACTTCATAGCCTACGCCGCCCACTTCAATTAac > 1:1176426/1‑35 (MQ=255) cgactttgtcattacgctgtttgcccacgcacaca < 1:3249631‑M1/3‑1 (MQ=255) cgactttgtcattacgctgtttgcccacgcacaca < 1:17337937‑M1/3‑1 (MQ=255) cACTTCATAGCCTACGCCGCCCACTTCAATTAaca > 1:9263823/1‑35 (MQ=255) gactttgtcattacgctgtttgcccacgcacacac > 1:14920818‑M1/32‑35 (MQ=255) gactttgtcattacgctgtttgcccacgcacacac < 1:11109301‑M1/4‑1 (MQ=255) gactttgtcattacgctgtctgcccacgcacacac < 1:4370727‑M1/4‑1 (MQ=255) cTTCATAGCCTACGCCGCCCACTTCAATTAACAcc > 1:18603063/1‑35 (MQ=255) cTTCATAGCCTACGCCGCCCACTTCAATTAACAcc > 1:15085143/1‑35 (MQ=255) cTTCATAGCCTACGCCGCCCACTTCAATTAACAcc > 1:13521566/1‑35 (MQ=255) actttgtcattacgctgtttgcccacgcacACAcc < 1:15433696‑M1/5‑1 (MQ=255) ttCATAGCCTACGCCGCCCACTTCAATTAACACCa < 1:19265500/35‑1 (MQ=255) ttCATAGCCTACGCCGCCCACTTCAATTAACACCa < 1:4877079/35‑1 (MQ=255) ttCATAGCCTACGCCGCCCACTTCAATTAACACCa > 1:1003709/1‑35 (MQ=255) ctttgtcattacgctgtttgcccacgcacACACCa < 1:10130338‑M1/6‑1 (MQ=255) ctttgtcattacgctgtttgcccacgcacACACCa > 1:274186‑M1/30‑35 (MQ=255) ctttgtcattacgctgtttgcccacgcacACACCa > 1:10638718‑M1/30‑35 (MQ=255) ctttgtcattacgctgtttgcccacgcacACACCa > 1:7980505‑M1/30‑35 (MQ=255) ctttgtcattacgctgtttgcccacgcacACACCa < 1:16131602‑M1/6‑1 (MQ=255) tttgtcattacgctgtttgcccacgcacACACCAg < 1:1469523‑M1/7‑1 (MQ=255) tttgtcattacgctgtttgcccacgcacACACCAg > 1:6379777‑M1/29‑35 (MQ=255) tttgtcattacgctgtttgcccacgcacACACCAg > 1:17815271‑M1/29‑35 (MQ=255) tCATAGCCTACGCCGCCCACTTCAATTAACACCAg < 1:18027820/35‑1 (MQ=255) tCATAGCCTACGCCGCACACTTCAATTAACACCAg < 1:8868008/35‑1 (MQ=255) caaTAGCCTACGCCGCCCACTTCAATTAACACCAg < 1:1241397/33‑1 (MQ=255) ttgtcattacgctgtttgcccacgcacACACCAGc > 1:16942207‑M1/28‑35 (MQ=255) ttgtcattacgctgtttgcccacgcacACACCAGc > 1:17616631‑M1/28‑35 (MQ=255) ttgtcattacgctgtttgcccacgcacACACCAGc > 1:6643591‑M1/28‑35 (MQ=255) ttgtcattacgctgtttgcccacgcacACACCAGc < 1:19133161‑M1/8‑1 (MQ=255) taTAGCCTCCGCCGCCCACTTCAATTAACACCAGc < 1:11569231/34‑1 (MQ=255) cATAGCCTACGCCGCCCACTTCAATTAACACCAGc < 1:4990345/35‑1 (MQ=255) ttAGCCTACGCCGCCCACTTCAATTAACACCAGCg < 1:12326236/34‑1 (MQ=255) tgtcattacgctgtttgcccacgcacACACCAGCg > 1:5874711‑M1/27‑35 (MQ=255) tgtcattacgctgtttgcccacgcacACACCAGCg < 1:2806690‑M1/9‑1 (MQ=255) tgtcattacgctgtttgcccacgcacACACCAGCg > 1:13637039‑M1/27‑35 (MQ=255) tgtcattacgctgtttgcccacgcacACACCAGCg > 1:13098984‑M1/27‑35 (MQ=255) aTAGCCTACGCCGCCCACTTCAATTAACACCAGCg > 1:11283626/1‑35 (MQ=255) aTAGCCTACGCCGCCCACTTCAATTAACACCAGCg > 1:1433396/1‑35 (MQ=255) aTAGCCTACGCCGCCCACTTCAATTAACACCAGCg < 1:7011691/35‑1 (MQ=255) aTAGCCTACGCCGCCCACTTCAATTAACACCAGCg > 1:19683018/1‑35 (MQ=255) tAGCCTACGCCGCCCACTTCAATTAACACCAGCgg < 1:1201246/35‑1 (MQ=255) gtcattacgctgtttgcccacgcacACACCAGCgg < 1:20373087‑M1/10‑1 (MQ=255) tcattacgctgtttgcccacgcacACACCAGCggg < 1:33062‑M1/11‑1 (MQ=255) tcattacgctgtttgcccacgcacACACCAGCggg < 1:16769424‑M1/11‑1 (MQ=255) tcattacgctgtttgcccacgcacACACCAGCggg < 1:1451961‑M1/11‑1 (MQ=255) tcattacgctgtttgcccacgcacACACCAGCggg < 1:18977593‑M1/11‑1 (MQ=255) aGCCTACGCCGCCCACTTCAATTAACACCAGCggg > 1:4473241/1‑35 (MQ=255) aGCCTACGCCGCCCACTTCAATTAACACCAGCggg < 1:3526556/35‑1 (MQ=255) aGCCTACGCCGCCCACTTCAATTAACACCAGCggg > 1:3814224/1‑35 (MQ=255) gCCTACGCCGCCCACTTCAATTAACACCAGCgggg > 1:20054240/1‑35 (MQ=255) gCCTACGCCGCCCACTTCAATTAACACCAGCgggg < 1:19399277/35‑1 (MQ=255) gCCTACGCCGCCCACTTCAATTAACACCAGCgggg > 1:18465828/1‑35 (MQ=255) cattacgctgtttgcccacgcacACACCAGCgggg < 1:9531926‑M1/12‑1 (MQ=255) attacgctgtttgcccacgcacACACCAGcggggt < 1:2368409‑M1/13‑2 (MQ=255) cTACGCCGCCCACTTCAATTAACACCAGCgggggg > 1:10403349/1‑34 (MQ=255) cTACGCCGCCCACTTCAATTAACACCAGCgggggg > 1:10048552/1‑34 (MQ=255) tacgctgtttgcccacgcacACACCagcggggttt < 1:17264953‑M1/15‑4 (MQ=255) tACGCCGCGCACTTCAATTAACACCAGCGGGGgtt < 1:18284987/35‑1 (MQ=255) tACGCCGCCCACTTCAATTAACACCAGCggggggt > 1:20602316/1‑33 (MQ=255) acgctgtttgcccacgcacACACCAGCGGGGtttg < 1:13173028‑M1/16‑1 (MQ=255) aCGCCGCCCACTTCAATTAACACCAGCGGGGgttg < 1:4875176/35‑1 (MQ=255) aCGCCGCCCACTTCAATTAACACCAGCGGGGgttg < 1:1654347/35‑1 (MQ=255) cgctgtttgcccacgcacACACCAGCGGGGtttgt < 1:4820744‑M1/17‑1 (MQ=255) cgctgtttgcccacgcacACACCAGCGGGGtttgt < 1:12161356‑M1/17‑1 (MQ=255) cgccgcCCACTTCAATTAACACCAGCGGGGgttgt > 1:5402697/1‑35 (MQ=255) cgccgcCCACTTCAATTAACACCAGCGGGGgttgt < 1:3508490/35‑1 (MQ=255) cgccgcCCACTTCAATTAACACCAGCGGGGgttgt < 1:18944208/35‑1 (MQ=255) cgccgcCCACTTCAATTAACACCAGCGGGGgttgt > 1:14971157/1‑35 (MQ=255) gctgtttgcccacgcacACACCAGCGGGGtttgtt < 1:18042462‑M1/18‑1 (MQ=255) ccgccCACTTCAATTAACACCAGCGGGGGTTGttt > 1:9403289/1‑35 (MQ=255) ccgccCACTTCAATTAACACCAGCGGGGGTTGttt < 1:2516487/35‑1 (MQ=255) ccgccCACTTCAATTAACACCAGCGGGGGTTGttt < 1:8377950/35‑1 (MQ=255) ccgccCACTTCAATTAACACCAGCGGGGGGTGttt > 1:13285627/1‑35 (MQ=255) cgccCACTTCAATTAACACCAGCGGGGGTTGtttt < 1:743399/35‑1 (MQ=255) gccCACTTCAATTAACACCAGCGGGGGTTGttttt < 1:12291223/35‑1 (MQ=255) cACTTCAATTAACACCAGCGGGGGTTGTTTTTCaa > 1:12679963/1‑35 (MQ=255) cACTTCAATTAACACCAGCGGGGGTTGTTTTTCaa < 1:128591/35‑1 (MQ=255) cACTTCAATTAACACCAGCGGGGGTTGTTTTTCaa < 1:892384/35‑1 (MQ=255) aCTTCAATTAACACCAGCGGGGGTTGTTTTTCAat < 1:18662889/35‑1 (MQ=255) cTTCAATTAACACCAGCGGGGGTTGTTTTTCAatg > 1:5220062/1‑35 (MQ=255) ttCAATTAACACCAGCGGGGGTTGTTTTTCAatga < 1:19863925/35‑1 (MQ=255) tCAATTAACACCAGCGGGGGTTGTTTTTCAatgat < 1:11227125/35‑1 (MQ=255) cAATTAACACCAGCGGGGGTTGTTTTTCAatgatg < 1:836485/35‑1 (MQ=255) aTTAACACCAGCGGGGGTTGTTTTTCAatgatgat < 1:9643802/35‑1 (MQ=255) aTTAACACCAGCGGGGGTTGTTTTTCAatgatgat < 1:18890571/35‑1 (MQ=255) aTTAACACCAGCGGGGGTTGTTTTTCAatgatgat < 1:4173591/35‑1 (MQ=255) aTTAACAACAGCGGGGGTTGTTTTTCAatgatgat < 1:11480599/35‑1 (MQ=255) ttAACACCAGCGGGGGTTGTTTTTTAatgatgatg > 1:597336/1‑35 (MQ=255) ttAACACCAGCGGGGGTTGTTTTTCAatgatgatg < 1:8400021/35‑1 (MQ=255) ttAACACCAGCGGGGGTTGTTTTTCAatgatgatg > 1:3186691/1‑35 (MQ=255) ttAACACCAGCGGGGGTTGTTTTTCAatgatgatg > 1:337609/1‑35 (MQ=255) ttAACACCAGCGGGGGTTGTTTTTCAatgatgatg < 1:10200264/35‑1 (MQ=255) ACACCAGCGGGGGTTGTTTTTCAATGATGATGCct > 1:6152487‑M1/1‑35 (MQ=255) | AGCACTTCATAGCCTACGCCGCCCACTTCAATTAACACCAGCGGGGGTTGTTTTTCAATGATGATGCCT > REL606/1924661‑1924729 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |