New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1183967 | 102 (0.990) | 15 (0.150) | 4/46 | NT | 15.2% | intergenic (+43/+40) | ycfR/ycfS | hypothetical protein/hypothetical protein |
? | REL606 | = 4549416 | 69 (0.700) | coding (18/1233 nt) | yjiO | multidrug efflux system protein |
Only 100 of 136 total aligned reads displayed.
ACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT > REL606/4549382‑4549450 | gCCATCGGGAAAAACAGCGTGGCGGGGTGGC‑gggg > 1:14404126/1‑34 (MQ=25) gCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGgg < 1:8090966‑M2/35‑3 (MQ=255) gCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGgg < 1:12102784‑M2/35‑3 (MQ=255) gCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGt < 1:8624043/35‑1 (MQ=255) ccATCGGGAAAAACAGCGTGGCGGCATGGG‑GGggg < 1:10621928‑M2/35‑4 (MQ=255) ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGggg < 1:20451367‑M2/35‑4 (MQ=255) ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTa < 1:12310457/35‑1 (MQ=255) ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTa < 1:12735869/35‑1 (MQ=255) cagcGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaa < 1:11142084/32‑1 (MQ=255) aTCGGGAAAAACAGCGTGGCGGCATGGC‑GGgggga < 1:2734175‑M2/35‑6 (MQ=255) aTCGGGAAAAACAGCGTGGCGGCATGGC‑GGgggga < 1:11239219‑M2/35‑6 (MQ=255) aTCGGGAAAAACAGCGTGGCGGCATGGC‑GGgggga < 1:11840345‑M2/35‑6 (MQ=255) aTCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaa < 1:16462468/35‑1 (MQ=255) tCGGGAAAAACAGCGTTGCGGCATGGC‑GGggggaa < 1:9448927‑M2/35‑7 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGC‑GGgggaaa < 1:7759203‑M2/35‑7 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGC‑GGgggaaa < 1:9421530‑M2/35‑7 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaa < 1:7297243/35‑1 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaa < 1:1084766/35‑1 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaa < 1:14778394/35‑1 (MQ=255) cGGGAAAAACAGCGTGGCGGCATGGC‑GGgggaaaa < 1:12370689‑M2/35‑8 (MQ=255) cGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaaa < 1:15776704/35‑1 (MQ=255) cGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaaa < 1:9487320/35‑1 (MQ=255) gggAAAAACAGCGTGGCGGCATGGC‑GGgggaaaaa < 1:12979548‑M2/35‑9 (MQ=255) gggAAAAACAGCGTGGCGGCATGGC‑GGgggaaaaa < 1:16185623‑M2/35‑9 (MQ=255) gggAAAAACAGCGTGGCGGCATGGC‑GGgggaaaaa < 1:16269‑M2/35‑9 (MQ=255) gggAAAAACAGCGTGGCGGCATGGC‑GGGTaaaaaa < 1:15121711/35‑1 (MQ=255) ggAAAAACAGCGTGGCGGCATGGC‑GGggggaaaaa < 1:2945115‑M2/35‑10 (MQ=255) ggAAAAACAGCGTGGCGGCATGGC‑GGgggaaaaaa < 1:17518976‑M2/35‑10 (MQ=255) ggAAAAACAGCGTGGCGGCATGGC‑GGGTaaaaaaa < 1:18595415/35‑1 (MQ=255) gAAAAACAGCGTGGCTGCATGGC‑GGGGaaaaaaaa > 1:16699024/1‑34 (MQ=37) gAAAAACAGCGTGGCTGCATGGC‑GGGGAAAAAAAc > 1:14858419/1‑35 (MQ=37) gAAAAACAGCGTGGCGGCATGGC‑GGggggaaaaaa < 1:1288440‑M2/35‑11 (MQ=255) gAAAAACAGCGTGGCGGCATGGC‑GGggggaaaaaa < 1:8198188‑M2/35‑11 (MQ=255) gAAAAACAGCGTGGCGGCATGGC‑GGgggaaaaaaa < 1:15658226‑M2/35‑11 (MQ=255) gAAAAACAGCGTGGCGGCATGGC‑GGgggaaaaaaa < 1:6746825‑M2/35‑11 (MQ=255) gAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAc < 1:477176/35‑1 (MQ=255) gAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAc < 1:8786577/35‑1 (MQ=255) aaaaaCAGCGTGGCGGCATGGCTGGGGaaaaaaaa > 1:6684433/1‑34 (MQ=18) aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACg < 1:393526/35‑1 (MQ=255) aaaaCAGCGTGGCTGCATGGC‑GGGGaaaaaaaaga > 1:6640442/1‑32 (MQ=25) aaaaCAGCGTGGCGGCATGGC‑GGGGgaaaaaaaaa > 1:9568692/1‑32 (MQ=21) aaaaCAGCGTGGCGGCATGGC‑GGGGgaaaaaaaaa > 1:11325532/1‑32 (MQ=21) aaaCAGCGTGGCGGCATGGC‑GGggggaaaaaaaaa < 1:12292925‑M2/35‑14 (MQ=255) aaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTg < 1:18479089/35‑1 (MQ=255) aaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTgg < 1:4458521/35‑1 (MQ=255) aCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGc < 1:2062924/35‑1 (MQ=255) aCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGc < 1:9564729/35‑1 (MQ=255) aCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGc < 1:13559334/35‑1 (MQ=255) cAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCa < 1:8911689/35‑1 (MQ=255) aGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCAt < 1:14120771/35‑1 (MQ=255) gCGTGGCGGCATTGC‑GGGTAAAAAAACGTGGCATa > 1:17079689/1‑35 (MQ=255) cGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaa < 1:10321203/35‑1 (MQ=255) cGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaa < 1:406245/35‑1 (MQ=255) cGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaa < 1:14217990/35‑1 (MQ=255) gTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaac < 1:11272871/35‑1 (MQ=255) gTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATaac < 1:16231073/35‑1 (MQ=255) tGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaaca < 1:3432013/35‑1 (MQ=255) tGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaaca < 1:7047937/35‑1 (MQ=255) tGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaaca < 1:184082/35‑1 (MQ=255) tGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaaca < 1:14876902/35‑1 (MQ=255) ggcggcATGGC‑GGGTAAAAAAACGTGGCATaacaa < 1:2834708/35‑1 (MQ=255) ggcggcATGGC‑GGGTAAAAAAACGTGGCATaacaa < 1:5106298/35‑1 (MQ=255) ggcggcATGGC‑GGGTAAAAAAACGTGGCATaacaa < 1:10552433/35‑1 (MQ=255) ggcggcATGGC‑GGGTAAAAAAACGTGGCAGaacaa < 1:10448606/35‑1 (MQ=255) cggcATGGC‑GGGTAAAAAAACGTGGCATaacaaac < 1:19029158/35‑1 (MQ=255) cggcATGGC‑GGGTAAAAAAACGTGGCATaacaaac < 1:13394785/35‑1 (MQ=255) cggcATGGC‑GGGTAAAAAAACGTGGCATaacaaac < 1:16825308/35‑1 (MQ=255) cggcATGGC‑GGGTAAAAAAACGTGGCATaacaaac < 1:8269152/35‑1 (MQ=255) ggcATGGC‑GGGTAAAAAAACGTGGCATaacaaaca < 1:9187369/35‑1 (MQ=255) ggcATGGC‑GGGTAAAAAAACGTGGCATaacaaaca < 1:13798223/35‑1 (MQ=255) ggcATGGC‑GGGTAAAAAAACGTGGCATaacaaaca < 1:3574280/35‑1 (MQ=255) ggcATGGC‑GGGTAAAAAAACGTGGCATaacaaaca < 1:1415107/35‑1 (MQ=255) ggcATGGC‑GGGGGAAAAAAAAAGGCATaaaaaaaa > 1:1017363/1‑33 (MQ=0) gcATGGC‑GGGTAAAAAAACGTGGCATAacaaacaa < 1:8984156/35‑1 (MQ=255) gcATGGC‑GGGTAAAAAAACGTGGCATAacaaacaa < 1:12891961/35‑1 (MQ=255) cATGGC‑GGGTAAAAAAACGTGGCATAACAaacaac < 1:12638595/35‑1 (MQ=255) cATGGC‑GGGTAAAAAAACGTGGCATAACAaacaac < 1:18184653/35‑1 (MQ=255) cATGGC‑GGGTAAAAAAACGTGGCATAACAaacaac < 1:18688617/35‑1 (MQ=255) aTGGC‑GGGTAAAAAAACGTGGCATAACAAACAACt < 1:3848175/35‑1 (MQ=255) tGGC‑GGGGAAAAAAACGTGGCATAACAAACAACTc > 1:18339040/1‑35 (MQ=255) tGGC‑GGGGAAAAAAACGTGGCATAACAAACAACTc > 1:4466854/1‑35 (MQ=255) gC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCt < 1:3474021/35‑1 (MQ=255) gC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCt < 1:20178901/35‑1 (MQ=255) gC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCt < 1:18104522/35‑1 (MQ=255) c‑GGGTAAAAAAACGTGGCATAACAAACAACTCCtt < 1:16807092/35‑1 (MQ=255) c‑GGGTAAAAAAACGTGGCATAACAAACAACTCCtt < 1:9141140/35‑1 (MQ=255) c‑GGGTAAAAAAACGTGGCATAACAAACAACTCCtt < 1:11971328/35‑1 (MQ=255) c‑GGGTAAAAAAACGTGGCATAACAAACAACTCCtt > 1:1174017/1‑35 (MQ=255) c‑GGGTAAAAAAACGTGGCATAACAAACAACTCCtt < 1:11345486/35‑1 (MQ=255) gggTAAAAAAACGTGGCATAACAAACAACTCCTTg > 1:4877632/1‑35 (MQ=255) gggTAAAAAAACGTGGCATAACAAACAACTCCTTg < 1:15014439/35‑1 (MQ=255) gggTAAAAAAACGTGGCATAACAAACAACTCCTTg > 1:7123731/1‑35 (MQ=255) gggTAAAAAAACGTGGCATAACAAACAACTCCTTg > 1:9182465/1‑35 (MQ=255) ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt > 1:16279752/1‑35 (MQ=255) ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt < 1:14627224/35‑1 (MQ=255) ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt < 1:18194507/35‑1 (MQ=255) ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt > 1:19890876/1‑35 (MQ=255) ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt > 1:12121113/1‑35 (MQ=255) ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt < 1:11408076/35‑1 (MQ=255) ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt < 1:19865972/35‑1 (MQ=255) | ACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT > REL606/4549382‑4549450 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |