New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 9904112 (1.090)9 (0.100) 5/42 NT 11.5% intergenic (+13/+22) mogA/yaaH molybdenum cofactor biosynthesis protein/conserved inner membrane protein associated with acetate transport
?REL606 4001993 = 40 (0.440)intergenic (+10/‑32) tatC/tatD TatABCE protein translocation system subunit/DNase, magnesium‑dependent

GCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/9868‑9904
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgCCCGTCAGGGCGGTTGTCATATGGAGTACAGGAT  >  REL606/4001993‑4002026
                                                                       
GCAAGACGCGACGTTAGCGAATAAAAAAATCCCCC                                      <  1:7776460/35‑1
GCAAGACGCGACGTTAGCGAATAAAAAAATCCCCC                                      <  1:7321397/35‑1
GCAAGACGCGACGTTAGCGAATAAAAAAATCCCCC                                      <  1:7002199/35‑1
GCAAGACGCGACGTTAGCGAATAAAAAAATCCCCC                                      >  1:6972409/1‑35
GCAAGACGCGACGTTAGCGAATAAAAAAATCCCCC                                      <  1:4243219/35‑1
  AAGACGCGACGTTAGCGAATAAAAAAATCCCTCCG                                    >  1:5978324/1‑35
  AAGACGCGACGTTAGCGAATAAAAAAATCCCCCCG                                    <  1:17067420/35‑1
                      AAAAAAATCCCCCCGCCCGTCAGGGCGGTTGTCAT                <  1:5907627/35‑1
                      AAAAAAATCCACCCGCCCGTCAGGGCGGTTGTCAT                <  1:10391100/35‑1
                       AAAAAATCCCCCCGCCCGTCAGGGCGGTTGTCATA               <  1:982103/35‑1
                         cAAATCCCCCCGCCCGTCAGGGCGGTTGTCATATG             <  1:20251378/34‑1
                         AAAATCCACCCGCCCGTCAGGGCGGTTGTCATATG             <  1:9230855/35‑1
                         AAAATCCACCCGCCCGTCAGGGCGGTTGTCATATG             <  1:2063598/35‑1
                          AAATCCACCCGCCCGTCAGGGCGGTTGTCATATGG            <  1:16888636/35‑1
                            ATCCCCCCGCCCGTCAGGGCGGTTGTCATATGGAG          <  1:10981631/35‑1
                            ATCCACCCGCCCGTCAGGGCGGTTGTCATATGGAG          <  1:17899403/35‑1
                             TCCCCCCGCCCGTCAGGGCGGTTGTCATATGGAGT         <  1:16254958/35‑1
                             TCCACCCGCCCGTCAGGGCGGTTGTCATATGGAGT         <  1:19881034/35‑1
                             TCCACCCGCCCGTCAGGGCGGTTGTCATATGGAGT         <  1:11331416/35‑1
                              ccaCCCGCCCGTCAGGGCGGTTGTCATATGGAGTA        <  1:19118505/32‑1
                              aCCCCCGCCCGTCAGGGCGGTTGTCATATGGAGTA        <  1:4623038/34‑1
                              CCCCCCGCCCGTCAGGGCGGTTGTCATATGGAGTA        <  1:19672628/35‑1
                              CCCCCCGCCCGTCAGGGCGGTTGTCATATGGAGTA        <  1:4161896/35‑1
                              CCCCCCGCCCGTCAGGGCGGTTGTCATATGGAGTA        <  1:13694448/35‑1
                                tCCCGCCCGTCAGGGCGGTTGTCATATGGAGTACA      <  1:16689180/34‑1
                                agCCGCCCGTCAGGGCGGTTGTCATATGGAGTACA      <  1:17622551/33‑1
                                CCCCGCCCGTCAGGGCGGTTGTCATATGGAGTACA      <  1:5335882/35‑1
                                 CCCGCCCGTCAGGGCGGTTGTCATATGGAGTACAG     <  1:7352113/35‑1
                                 CCCGCCCGTCAGGGCGGTTGTCATATGGAGTACAG     <  1:20309400/35‑1
                                  CCGCCCGTCAGGGCGGTTGTCATATGGAGTACAGG    <  1:18288882/35‑1
                                  CCGCCCGTCAGGGCGGTTGTCATATGGAGTACAGG    <  1:7377565/35‑1
                                   CGCCCGTCAGGGCGGTTGTCATATGGAGTACAGGA   <  1:18379752/35‑1
                                    GCCCGTCAGGGCGGTTGTCATATGGAGTACAGGAT  <  1:14523210/35‑1
                                    GCCCGTCAGGGCGGTTGTCATATGGAGTACAGGAT  <  1:14494418/35‑1
                                    GCCCGTCAGGGCGGTTGTCATATGGAGTACAGGAT  <  1:19598121/35‑1
                                                                       
GCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/9868‑9904
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgCCCGTCAGGGCGGTTGTCATATGGAGTACAGGAT  >  REL606/4001993‑4002026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.