New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 456653 = | 60 (0.580) | 11 (0.140) | 4/36 | NT | 17.7% | coding (1034/1194 nt) | acrA | multidrug efflux system |
? | REL606 | 3845122 = | 57 (0.740) | coding (269/360 nt) | rnpA | ribonuclease P |
TGGAAACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/456692‑456653 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgaAAAAAGGGGTTGCCGACCTCGATAACCGTGCTCT > REL606/3845122‑3845155 gGGAAACCCGTCCGATCGTTGAAAGCCAGGCTATT < 1:4692219/34‑1 TGGAACCCCGTCCGATCGTTGCAAGCCAGGCTATT < 1:10231601/35‑1 TGGAACCCCGTCCGATCGTTGCAAGCCAGGCTATT < 1:1597245/35‑1 TGGAAACCCGTCCGATCGTTGCAAGCCAGGCTATT > 1:323374/1‑35 TGGAAACCCGTCCGATCGTTGCAAGCAAGGCTATT < 1:3084882/35‑1 GGAACCCCGTCCGATCGTTGCAAGCCAGGCTATTG < 1:13680123/35‑1 GGAAACCCGTCCGATCGTTGCAAGCCAGGCTATTG < 1:18399659/35‑1 GGAAACCCGTCCGATCGTTGCAAGCCAGGCTATTG < 1:1846430/35‑1 GGAAACCCGTCCGATCGTTGCAAGCCAGGCTATTG > 1:15639756/1‑35 GGAAACCCGTCCGATCGTTGCAAGCCAGGCTATTG < 1:3416863/35‑1 GAACCCCGTCCGATCGTTGCAAGCCAGGCTATTGG < 1:17428466/35‑1 GAACCCCGTCCGATCGTTGCAAGCCAGGCTATTGG < 1:6342157/35‑1 GAAACCCGTCCGATCGTTGCAAGCCAGGCTATTGG > 1:18953630/1‑35 GAAACCCGTCCGATCGTTGCAAGCCAGGCTATTGG > 1:14700302/1‑35 GAAACCCGTCAGATCGTTGCAAGCCAGGCTATTGG < 1:2415602/35‑1 AAACCCGTCCGATCGTTGCAAGCCAGGCTATTGGC > 1:4270950/1‑35 AAACCCGTCCGATCGTTGCAAGCCAGGCTATTGGC > 1:12768289/1‑35 AAACCCGTCCGATCGTTGCAAGCCAGGCTATTGGC < 1:13932719/35‑1 AACCCGTCCGATCGTTGCACGCCAGGCTATTGGCG > 1:4481989/1‑35 AACCCGTCCGATCGTTGCAAGCCAGGCTATTGGgg > 1:3640080/1‑33 AACCCGTCCGATCGTTGCAAGCCAGGCTATTGGgg > 1:6873561/1‑33 AACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCG < 1:12881497/35‑1 AACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCG > 1:7039152/1‑35 tCCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA < 1:8286418/34‑1 ACCCGTCCGATCGTTGCAAGCCAGGCTATTGGGGA > 1:9227888/1‑35 ACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA < 1:9495655/35‑1 ACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA > 1:16009544/1‑35 ACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA > 1:11630806/1‑35 ACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA < 1:18954949/35‑1 CCCGTCCGATCGTTGCAAGCCAGGCTATTGGGGAA > 1:4517363/1‑35 CCCGTCCGATCGTTGCAAGCCAGGCTATTGGGGAA > 1:11506053/1‑35 GTCCGATCGTTGCAAGCCAGGCTATTGGGGAAAAA > 1:1946563/1‑35 GTCCGATCGTTGCAAGCCAGGCTATTGGGGAAAAA > 1:1425021/1‑35 GTCCGATCGTTGCAAGCCAGGCTATTGGCGAAAAA > 1:573503/1‑35 TCCGATCGTTGCAAGCCAGGCTATTGGGGAAAAAg > 1:10555442/1‑34 TCCGATCGTTGCAAGCCAGGCTATTGGGGAAAAAA > 1:16859102/1‑35 TCCGATCGTTGCAAGCCAGGCTATTGGCGAAAAga > 1:17390382/1‑33 CCGATCGTTGCAAGCCAGGCTATTGGCGGAAAAAG > 1:15457069/1‑35 CGATCGTTGCAAGCCAGGCTATTGGCGAAAAAAGG > 1:9632917/1‑35 CGATCGTTGCAAGCCAGGCTATTGGCGAAAAAAGG > 1:18480873/1‑35 CGATCGTTGCAAGCCAGGCTATTGGCGAAAAAAGG > 1:14630597/1‑35 GATCGTTGCAAGCCAGGCTATTGGCGAAAAATGGG > 1:14891799/1‑35 GATCGTTGCAAGCCAGGCTATTGGCGAAAAAAGGG > 1:9328705/1‑35 GATCGTTGCAAGCCAGGCTATTGGCGAAAAAAGGG > 1:8251926/1‑35 ATCGTTTCAAGCCAGGCTATTGGCGAAAAAAGGGt > 1:8543281/1‑34 ATCGTTGCAAGCCAGGCTATTGGCGGAAAAAGGGG > 1:1002709/1‑35 ATCGTTGCAAGCCAGGCTATTGGCGAAAAAAGGGG > 1:20595424/1‑35 CGTTGCAAGCCAGGCTATTGGCGAAAAAAGGGGgg > 1:4000148/1‑33 TGGCGAAAAAAGGGGTTGCCGACCTCGATAACCGT > 1:6811869/1‑35 GGCGAAAAAAGGGGTTGCCGCCCTCGATAACCGTG < 1:7465864/35‑1 GGCGAAAAAAGGGGTTGCCGACCTCGATAACCGTG > 1:5555636/1‑35 GCGAAAAAAGGGGTTGCCGACCTCGATAACCGTGC > 1:1598080/1‑35 GCGAAAAAAGGGGTTGCCGACCTCGATAACCGTGC > 1:8066372/1‑35 GCGAAAAAAGGGGTTGCCGAACTCGATAACCGTGC > 1:13627546/1‑35 CGAAAAAAGGGGTTGCCGCCCTCGATAACCGTGCT < 1:3385861/35‑1 CGAAAAAAGGGGTTGCCGACCTCGATAACCGTGCT < 1:15440595/35‑1 CGAAAAAAGGGGTTGCCGACCTCGATAACCGTGCT < 1:12014012/35‑1 CGAAAAAAGGGGTTGCCGACCTCGATAACCGTGCT > 1:10201307/1‑35 GAAAAAAGGGGTTGCCGACCTCGATAACCGTGCTC > 1:7533916/1‑35 GAAAAAAGGGGTTGCCGACCTCGATAACCGTGCTC > 1:13851609/1‑35 GAAAAAAGGGGTTGCCGACCTCGATAACCGTGCTC > 1:13444289/1‑35 GAAAAAAGGGGTTGCCGACCTCGATAACCGTGCTC > 1:2616233/1‑35 AAAAAAGGGGTTGCCGACCTCGATAACCGTGCTCT > 1:7328156/1‑35 AAAAAAGGGGTTGCCGACCTCGATAACCGTGCTCT > 1:13678828/1‑35 AAAAAAGGGGTTGCCGACCTCGATAACCGTGCTCT < 1:6654269/35‑1 TGGAAACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/456692‑456653 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgaAAAAAGGGGTTGCCGACCTCGATAACCGTGCTCT > REL606/3845122‑3845155 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |