New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 294481647 (0.460)22 (0.210) 8/48 NT 22.6% coding (261/660 nt) rpiA ribose‑5‑phosphate isomerase A
?REL606 3912264 = 104 (1.010)intergenic (+44/‑96) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

CGCGCCGCCGCCTTTGATCATTTGCATGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2944783‑2944816
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGTTTTTTTTGACCTTAAAAACATAACCG  >  REL606/3912264‑3912295
                                                                  
CGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGG                                 >  1:10707136/1‑35
CGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGG                                 >  1:15286121/1‑35
CGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGG                                 >  1:17921565/1‑35
 GCGCCGCCGCCTTTGATCATTTGCATGTGGCCGGG                                >  1:5147931/1‑35
 GCGCCGCCGCCTTTGATCATTTGCATGTGGCCGGG                                >  1:7332647/1‑35
  CGCCGCCGCCTTTGATCATTTGCATGTGGCCGGGG                               >  1:1757689/1‑35
   GCCGCCGCCTTTGATCATTTGCATGTGGCCGGGGG                              >  1:8562947/1‑35
    CCGCCGCCTTTGATCATTTGCATGTGGCCGGGGGG                             >  1:20308021/1‑35
      GCCGCCTTTGATCATTTGCATGTGGCCGGGGGtgt                           >  1:6929922/1‑32
      GCCGCCTTTGATCATTTGCATGTGGCCGGGGGTTT                           >  1:9504873/1‑35
      GCCGCCTTTGATCATTTGCATGTGGCCGGGGGGTT                           >  1:2110337/1‑35
       CCGCCTTTGATCATTTGCATGTGGCCGGGGGTTTT                          >  1:10840791/1‑35
       CCGCCTTTGATCATTTGCATGTGGCCGGGGGTTTT                          >  1:11568735/1‑35
       CCGCCTTTGATCATTTGCATGTGGCCGGGGGGTTT                          >  1:15463851/1‑35
        CGCCTTTGATCATTTGCATGTGGCCGGGGGTTTTT                         >  1:19485750/1‑35
        CGCCTTTGATCATTTGCATGTGGCCGGGGGTTTTT                         >  1:20350798/1‑35
        CGCCTTTGATCATTTGCATGTGGCCGGGGGGTTTT                         >  1:8355659/1‑35
         GCCTTTGATCATTTGCATGTGGCCGGGGGGTTTgt                        >  1:5549709/1‑33
         GCCTTTGATCATTTGCATGTGGCCGGGGGGGTTTT                        >  1:14980932/1‑35
          CCTTTGATCATTTGCATGTGGCCGGGGGTTTTTTT                       >  1:19823674/1‑35
          CCTTTGATCATTTGCATGTGGCCGGGGGTTTTTTT                       >  1:1835831/1‑35
          CCTTTGATCATTTGCATGTGGCCGGGGGTTTTTTT                       >  1:5891842/1‑35
           CTTTGATCATTTGCATGTGGCCGGGGGTTTTTTTT                      >  1:14992251/1‑35
            TTTGATCATTTGCATGTGGCCGGGGGTTTTTTTTg                     >  1:10627130/1‑34
            TTTGATCATTTGCATGTGGCCGGGGGTTTTTTTTT                     >  1:9734919/1‑35
            TTTGATCATTTGCATGTGGCCGGGGGGTTTTTctc                     >  1:4119537/1‑32
            TTTGATCATTTGCATGTGGCCGGGGGGTTTTTTTc                     >  1:1654571/1‑34
            TTTGATCATTTGCATGTGGCCGGGGGGTTTTTTTT                     >  1:3599198/1‑35
            TTTGATCATTTGCATGTGGCCGGGGGGTTTTTTTT                     >  1:12694007/1‑35
             TTGATCATTTGCATGTGGCCGGGGGTTTTTTTTTc                    >  1:10125736/1‑34
             TTGATCATTTGCATGTGGCCGGGGGGTTTTTTTTG                    >  1:5128989/1‑35
                               tCGGGGGGTTTTTTTTGACCTTAAAAACATAACCG  <  1:19708387/34‑1
                                                                  
CGCGCCGCCGCCTTTGATCATTTGCATGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2944783‑2944816
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGTTTTTTTTGACCTTAAAAACATAACCG  >  REL606/3912264‑3912295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.