New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 28073259 (0.570)9 (0.120) 3/36 NT 14.3% coding (170/636 nt) yagZ hypothetical protein
?REL606 3006460 = 64 (0.830)coding (470/819 nt) yafZ conserved protein

GCCAGGCTACCGAGTGGCGTCACAACCAGCTTACTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/280693‑280732
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtggGGGTTTTTGACCGGATTGAGGAAAAGCGTGATGC  >  REL606/3006460‑3006493
                                                                          
GCCATGCTACCGAGTGGCGTCACAACCAGCTTACT                                         >  1:18275137/1‑35
GCCAGGCTACCGAGTGGCGTCACAACCAGCTTACT                                         >  1:20193850/1‑35
GCCAGGCTACCGAGTGGCGTCACAACCAGCTTACT                                         <  1:4773869/35‑1
GCCAGGCTACCGAGTGGCGTCACAACCAGCTTACT                                         <  1:2448659/35‑1
GCCAGGCTACCGAGTGGCGTCACAACCAGCTTACT                                         >  1:1548088/1‑35
GCCAGGCTACCGAGTGGCGTCACAACCAGCTTACT                                         <  1:5500222/35‑1
 CCAGGCTACCGAGTGGCGTCACAACCAGCTTACTG                                        >  1:4436926/1‑35
 CCAGGCTACCGAGTGGCGTCACAACCAGCTTACTG                                        <  1:4476393/35‑1
 CCAGGCTACCGAGTGGCGTCACAACCAGCTTACTG                                        >  1:18930792/1‑35
 CCAGGCTACCGAGTGGCGTCACAACCAGCTTACTG                                        >  1:5986204/1‑35
 CCAGGCTACCGAGTGGCGTCACAACCAGCTTACTG                                        <  1:14467422/35‑1
 CCAGGCTACCGAGTGGCGTCACAACCAGCTTACTG                                        >  1:1893616/1‑35
 CCAGGCTACCGAGTGGCGTCACAACCAGCTTACTG                                        <  1:13112019/35‑1
 CCAGGCTACCGAGTGGCGTCACAACCAGCTTACTG                                        <  1:2964165/35‑1
 CCAGGCTACCGAGTGGCGTAACAACCAGCTTACTG                                        <  1:8729122/35‑1
  CAGGCTACCGAGTGGCGTCACAACCAGCTTACTGG                                       <  1:14676850/35‑1
  CAGGCTACCGAGTGGCGTCACAACCAGCTTACTGG                                       >  1:14245894/1‑35
  CAGGCTACCGAGTGGCGTCACAACCAGCTTACTGG                                       >  1:11911027/1‑35
  CAGGCTACCGAGTGGCGTCACAACCAGCTTACTGG                                       >  1:10611099/1‑35
  CAGGCTACCGAGTGGCGCCACAACCAGCTTACTGG                                       >  1:19045400/1‑35
   AGGCTACCGAGTGGCGTCACAACCAGCTTACTGGT                                      >  1:5454272/1‑35
    GGCTACCGAGTGGCGTCACAACCAGCTTACTGGTG                                     <  1:17163503/35‑1
    GGCTACCGAGTGGCGTCACAACCAGCTTACTGGTG                                     <  1:20451556/35‑1
    GGCTACCGAGTGGCGTCACAACCAGCTTACTGGTG                                     <  1:4426305/35‑1
    GGCTACCGAGTGGCGTCACAACCAGCTTACTGGTG                                     <  1:7278192/35‑1
     GCTACCGAGTGGCGTCACAACCAGCTTACTGGTtg                                    >  1:6662929/1‑33
      CTACCGAGTGGCGTCACAACCAGCTTACTGGTGGG                                   >  1:343667/1‑35
      CTACCGAGTGGCGTCACAACCAGCTTACTGGTGGG                                   >  1:17894568/1‑35
      CTACCGAGTGGCGTCACAACCAGCTTACTGGTGGG                                   >  1:8935544/1‑35
        ACCGAGTGGCGTCACAACCAGCTTACTGGTGGGGt                                 >  1:16570351/1‑34
        ACCGAGTGGCGTCACAACCAGCTTACTGGTGGGGG                                 >  1:15057575/1‑35
          CGAGTGGCGTCACAACCAGCTTACTGGTGGGGGgt                               >  1:19407746/1‑33
          CGAGTGGCGTCACAACCAGCTTACTGGTGGGGGgt                               >  1:8499616/1‑33
          CGAGTGGCGTCACAACCAGCTTACTGGTGGGGGct                               >  1:12445509/1‑33
          CGAGTGGCGTCACAACCAGCTTACTGGTGGGGGTT                               >  1:2537491/1‑35
           GAGTGGCGTCACAACCAGCTTACTGGTGGGGGGTT                              >  1:9528882/1‑35
           GAGTGGCGTCACAACCAGCTTACTGGTGGGGGCTT                              >  1:2549850/1‑35
           GAGTGGCGTCACAACCAGCTTACTGGTGGGGGCTT                              >  1:12730413/1‑35
           GAGTGGCGTCACAACCAGCTTACTGGTGGGGGCTT                              >  1:15050773/1‑35
           GAGTGGCGTCACAACCAGCTTACTGGTGGGGGCTT                              >  1:20433674/1‑35
            AGTGGCGTCACAACCAGCTTACTGGTGGGGGTTTT                             >  1:3750931/1‑35
            AGTGGCGTCACAACCAGCTTACTGGTGGGGGGTTT                             >  1:20023494/1‑35
             GTGGCGTCACAACCAGCTTACTGGTGGGGGTTTTT                            >  1:8247623/1‑35
             GTGGCGTCACAACCAGCTTACTGGTGGGGGCTTTT                            >  1:4717955/1‑35
                                  TGGTGGGGGTTTTTGACCGGATTGAGGAAAAGCGT       >  1:9402868/1‑35
                                  TGGTGGGGGTTTTTGACCGGATTGAGGAAAAGCGT       >  1:8160195/1‑35
                                  TGGTGGGGGTTTTTGACCGGATTGAGGAAAAGCGT       <  1:7710718/35‑1
                                  TGGTGGGGGTTTTTGACCGGATTGAGGAAAAGCGT       <  1:13446065/35‑1
                                  TGGTGGGGGTTTTTGACCGGATTGAGGAAAAGCGT       <  1:4614025/35‑1
                                   GGTGGGGGTTTTTGACCTGATTGAGGAAAAGCGTG      >  1:14868717/1‑35
                                   GGTGGGGGTTTTTGACCGGATTGAGGAAAAGCGTG      <  1:10863333/35‑1
                                   GGTGGGGGTTTTTGACCGGATTGAGGAAAAGCGTG      >  1:7484719/1‑35
                                   GGTGGGGGTTTTTGACCGGATTGAGGAAAAGCGTG      <  1:500340/35‑1
                                    GTGGGGGTTTTTGACCGGATTGAGGAAAAGCGTGA     <  1:10423185/35‑1
                                    GTGGGGGTTTTTGACCGGATTGAGGAAAAGCGTGA     >  1:6527427/1‑35
                                    GTGGGGGTTTTTGACCGGATTGAGGAAAAGCGTGA     <  1:19851596/35‑1
                                    GTGGGGGTTTTTGACCGGATTGAGGAAAAGCGTGA     <  1:15654493/35‑1
                                    GTGGGGGTTTTTGACCGGATTGAGGAAAAGCGTGA     >  1:2827159/1‑35
                                     TGGGGGTTTTTGACCGGATTGAGGAAAAGCGTGAT    <  1:8460306/35‑1
                                     TGGGGGTTTTTGACCGGATTGAGGAAAAGCGTGAT    <  1:8403665/35‑1
                                     TGGGGGTTTTTGACCGGATTGAGGAAAAGCGTGAT    <  1:16454337/35‑1
                                      GGGGGTTTTTGACCGGATTGAGGAAAAGCGTGATG   >  1:12141444/1‑35
                                      GGGGGTTTTTGACCGGATTGAGGAAAAGCGTGATG   >  1:17116813/1‑35
                                      GGGGGTTTTTGACCGGATTGAGGAAAAGCGTGATG   >  1:16758939/1‑35
                                      GGGGGTTTTTGACCGGATTGAGGAAAAGCGTGATG   >  1:15796366/1‑35
                                      GGGGGTTTTTGACCGGATTGAGGAAAAGCGTGATG   <  1:4546198/35‑1
                                      GGGGGTTTTTGACCGGATTGAGGAAAAGCGTGATG   <  1:543694/35‑1
                                       GGGGTTTTTGACCGGATTGAGGAAAAGCGTGATGC  >  1:19519135/1‑35
                                       GGGGTTTTTGACCGGATTGAGGAAAAGCGTGATGC  <  1:14413294/35‑1
                                       GGGGTTTTTGACCGGATTGAGGAAAAGCGTGATGC  >  1:2721627/1‑35
                                       GGGGTTTTTGACCGGATTGAGGAAAAGCGTGATGC  >  1:9373336/1‑35
                                       GGGGTTTTTGACCGGATTGAGGAAAAGCGTGATGC  >  1:19573375/1‑35
                                       GGGGTTTTTGACCGGATTGAGGAAAACCGTGATGC  >  1:14910801/1‑35
                                                                          
GCCAGGCTACCGAGTGGCGTCACAACCAGCTTACTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/280693‑280732
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtggGGGTTTTTGACCGGATTGAGGAAAAGCGTGATGC  >  REL606/3006460‑3006493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.