New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 368615255 (0.540)7 (0.070) 3/46 NT 10.7% coding (410/741 nt) yiaT hypothetical protein
?REL606 = 4031953 64 (0.650)intergenic (+238/+174) hemN/glnG coproporphyrinogen III oxidase/fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein

CTCCCCCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3686142‑3686152
‑‑‑‑‑‑‑‑‑‑cTGCCGTTGCTGCCGTGCTGTGTGCCGCAATGATT  <  REL606/4031953‑4031920
                                             
acCCCCCACCCTGCCGTTGCTGCCGTGCTGTGTGC            <  1:2349439/33‑1
  CCCCCCCCCTGCCGTTGCTGCCGTGCTGTGTGCCG          <  1:10378141/35‑1
  CCCCCCCCCTGCCGTTGCTGCCGTGCTGTGTGCCG          <  1:14410961/35‑1
  CCCCCACCCTGCCGTTGCTGCCGTGCTGTGTGCCG          <  1:1885187/35‑1
  CCCCCACCCTGCCGTTGCTGCCGTGCTGTGTGCCG          <  1:20033640/35‑1
   CCCCCCCCTGCCGTTGCTGCCGTGCTGTGTGCCGC         <  1:6030464/35‑1
    CCCCCCCTGCCGTTGCTGCCGTGCTGTGTGCCGCA        <  1:7530558/35‑1
     cccCCCTGCCGTTGCTGCCGTGCTGTGTGCCGCAA       <  1:10642301/32‑1
     cccCCCTGCCGTTGCTGCCGTGCTGTGTGCCGCAA       <  1:806310/32‑1
     CCACCCTGCCGTTGCTGCCGTGCTGTGTGCCGCAA       <  1:7450614/35‑1
       cCCCGGCCGTTGCTGCCGTGCTGTGTGCCGCAATG     <  1:19018751/34‑1
         CCTGCCGTTGCTGCCGTGCTGTGTGCCGCAATGAT   <  1:18283994/35‑1
          CTGCCGTTGCTGCCGTGCTGTGTGCCGCAATGATT  <  1:10761643/35‑1
          CTGCCGTTGCTGCCGTGCTGTGTGCCGCAATGATT  <  1:16391651/35‑1
          CTGCCGTTGCTGCCGTGCTGTGTGCCGCAATGATT  <  1:19367888/35‑1
                                             
CTCCCCCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3686142‑3686152
‑‑‑‑‑‑‑‑‑‑cTGCCGTTGCTGCCGTGCTGTGTGCCGCAATGATT  <  REL606/4031953‑4031920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.