New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422591 =80 (0.780)9 (0.110) 4/38 NT 16.0% intergenic (‑278/+184) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter
?REL606 3002837 = 31 (0.380)coding (307/2517 nt) yeeR predicted membrane protein

CACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCA  >  REL606/3002803‑3002871
                                  |                                  
cacCTTTGACTCTGTGAAATTTATTCTGACCACCg                                    >  1:4201987/1‑35 (MQ=255)
cacCTTTGACTCTGTGAAATTTATTCTGACCACCg                                    >  1:5018335/1‑35 (MQ=255)
 acCTTTGACTCTGTGAAATTTATTCTGACCACCGc                                   >  1:18505764/1‑35 (MQ=255)
 acCTTTGACTCTGTGAAATTTATTCTGACCACCGc                                   >  1:9259079/1‑35 (MQ=255)
 acCTTTGACTCTGTGAAATTTATTCTGACCACCGc                                   >  1:6687820/1‑35 (MQ=255)
 acCTTTGACTCTGTGAAATTTATTCTGACCACCGc                                   >  1:14545395/1‑35 (MQ=255)
  ccTTTGACTCTGTGAAATTTATTCTGACCACCGct                                  >  1:12071622/1‑35 (MQ=255)
   cTTTGACTCTGTGAAATTTATTCTGACCACCGctc                                 >  1:3224546/1‑35 (MQ=255)
    tttGACTCTGTGAAATTTATTCTTACCACCGctct                                >  1:17911060/1‑35 (MQ=255)
    tttGACTCTGTGAAATTTATTCTGACCACCGctct                                >  1:6070501/1‑35 (MQ=255)
    tttGACTCTGTGAAATTTATTCTGACCACCGctct                                >  1:1448310/1‑35 (MQ=255)
     ttGACTCTGTGAAATTTATTCTGACCACCGCtctc                               >  1:3787411/1‑35 (MQ=255)
     ttGACTCTGTGAAATTTATTCTGACCACCGCtctc                               >  1:3580723/1‑35 (MQ=255)
     ttGACTCTGTGAAATTTATTCTGACCACCGCtctc                               >  1:2728948/1‑35 (MQ=255)
       gACTCTGTGAAATTTATTCTGACCACCGCTCTCGc                             >  1:13580682/1‑35 (MQ=255)
        aCTCTGTGAAATTTATTCTGACCACCGCTCTCGcc                            >  1:13512486/1‑35 (MQ=255)
        aCTCTGTGAAATTTATTCTGACCACCGCTCTCGcc                            >  1:16491835/1‑35 (MQ=255)
         ctctGTGAAATTTATTCTGACCACCGCTCTCGCCg                           >  1:1798339/1‑35 (MQ=255)
         ctctGTGAAATTTATTCTGACCACCGCTCTCGCCg                           >  1:16030644/1‑35 (MQ=255)
          tctGTGAAATTTATTCTGACCACCGCTCTCGCCgg                          >  1:6317053/1‑35 (MQ=255)
          tctGTGAAATTTATTCTGACCACCGCTCTCGCCgg                          >  1:6574069/1‑35 (MQ=255)
          tctGTGAAATTTATTCTGACCACCGCTCTCGCCgg                          >  1:19000465/1‑35 (MQ=255)
           ctttgAAATTTATTCTGACCACCGCTCTCGCCggt                         >  1:415549/4‑35 (MQ=255)
           ctGTGAAATTTATTCTGACCACCGCTCTCGCCggt                         >  1:9808996/1‑35 (MQ=255)
           ctGTGAAATTTATTCTGACCACCGCTCTCGCCggt                         >  1:19888820/1‑35 (MQ=255)
           ctGTGAAATTTATTCTGACCACCGCTCTCGCCggt                         >  1:2605742/1‑35 (MQ=255)
           ctGTGAAATTTATTCTGACCACCGCTCTCGCCggt                         >  1:4201871/1‑35 (MQ=255)
            tgtgAAATTTATTCTGACCACCGCTCTCGCCggtg                        >  1:20345800/1‑35 (MQ=255)
            tgtgAAATTTATTCTGACCACCGCTCTCGCCggtg                        >  1:9748693/1‑35 (MQ=255)
            tgtgAAATTTATTCTGACCACCGCTCTCGCCggtg                        >  1:5021189/1‑35 (MQ=255)
            tgtgAAATTTATTCTGACCACCGCTCTCGCCggag                        >  1:14870142/1‑33 (MQ=255)
             gtgAAATTTATTCTGACCACCGCTCTCGCCggtgg                       >  1:16039769/1‑35 (MQ=255)
              tgAAATTTATTCTGACCACCGCTCTCGCCggtggg                      >  1:6371474/1‑34 (MQ=255)
               gAAATTTATTCTGACCACCGCTCTCGCCggtgggc                     >  1:9318406/1‑33 (MQ=255)
                aaaTTTATTCTGACCACCGCTCTCGCCGGTGGGct                    >  1:48534/1‑35 (MQ=255)
                aaaTTTATTCTGACCACCGCTCTCGCCGGTGGGct                    >  1:12964731/1‑35 (MQ=255)
                  ttttttcccccccaccGCTCTCGCCGGTGGTctgc                  <  1:5885077‑M2/19‑1 (MQ=255)
                  aTTTATTCTGACCACCGCTCTCGCCGGTGGGctgc                  >  1:17750183/1‑35 (MQ=255)
                   tttttcccccccaccGCTCTCGCCGGTGGTctgct                 <  1:3051421‑M2/20‑1 (MQ=255)
                   tttATTCTGACCACCGCTCTCGCCGGTCGCctgct                 >  1:1156669/1‑35 (MQ=37)
                    ttttcccccccaccGCTCTCGCCGGTGGTctgctg                <  1:17314847‑M2/21‑1 (MQ=255)
                    ttttcccccccaccGCTCTCGCCGGTGGTctgctg                <  1:12077096‑M2/21‑1 (MQ=255)
                    ttttcccccccaccGCTCTCGCCGGTGGTctgctg                <  1:15597821‑M2/21‑1 (MQ=255)
                    ttttcccccccaccGCTCTCGCCGGTGGTctgctg                <  1:3741699‑M2/21‑1 (MQ=255)
                     tttcccccccaccGCTCTCGCAGGTGGTCTgctgg               <  1:523962‑M2/22‑1 (MQ=255)
                     tATTCTGACCACCGCTCTCGCCGGTGGGCTgctgg               >  1:11830592/1‑35 (MQ=255)
                     tATTCTGACCACCGCTCTCGCCGGTGGGCTgctgg               >  1:5664515/1‑35 (MQ=255)
                      ttcccccccaccGCTCTCGCCGGTGGTCTgctggc              <  1:18601162‑M2/23‑1 (MQ=255)
                      aTTCTGACCACCGCTCTCGCCGGTGGGCTgctggc              >  1:20027801/1‑35 (MQ=255)
                       ttCTGACCACCGCTCTCGCCGGTGGTCTgctggct             >  1:17986618/1‑35 (MQ=255)
                       tcccccccaccGCTCTCGCCGGTGGTCTgctggct             <  1:5202221‑M2/24‑1 (MQ=255)
                        gccccccaccGCGCTCGCCGGTGGTCTgctggctg            <  1:11250385‑M2/25‑1 (MQ=255)
                         ccccccaccGCTCTCGCCGGTGGTCTGCTGGCTGt           <  1:17526147‑M2/26‑1 (MQ=255)
                         ccccccaccGCTCTCGCCGGTGGTCTGCTGGCTGt           <  1:6998721‑M2/26‑1 (MQ=255)
                         ccccccaccGCTCTCGCCGGTGGTCTGCTGGCTGt           <  1:4815654‑M2/26‑1 (MQ=255)
                         ccccccaccGCTCTCGCCGGTGGTCTGCTGGCTGt           <  1:5729844‑M2/26‑1 (MQ=255)
                         cTGACCACCGCTCTCGCCGGTGGGGTgctggctgg           >  1:3107253/1‑34 (MQ=25)
                         cTGACCACCGCTCTCGCCGGTGGGCTgctggctgg           >  1:17219370/1‑34 (MQ=255)
                          tGACCACCGCTCTCGCCGGTTGTCTgctggctggg          >  1:12025568/1‑33 (MQ=38)
                          cccccaccGCTCTCGCCGGTGGTCTGCTGGCTGtt          <  1:2942602‑M2/27‑1 (MQ=255)
                           gACCACCGCTCTCGCCGGTGGGCTgctggctgggg         >  1:7426192/1‑32 (MQ=37)
                           ccccaccGCTCTCGCCGGTGGTCTGCTGGCTGTTc         <  1:3698596‑M2/28‑1 (MQ=255)
                           ccccaccGCTCTCGCCGGTGGTCTGCTGGCTGTTc         <  1:4948007‑M2/28‑1 (MQ=255)
                             cccccGCTCTCGCCGGTGGTCTGCTGGCTGTTccc       <  1:9458990‑M2/30‑1 (MQ=255)
                             ccaccGCTCTCGCCGGTGGTCTGCTGGCTGTTccc       <  1:17413320‑M2/30‑1 (MQ=255)
                             ccaccGCTCTCGCCGGTGGTCTGCTGGCTGTTccc       <  1:885531‑M2/30‑1 (MQ=255)
                             ccaccGCTCTCGCCGGTGGTCTGCTGGCTGTTccc       <  1:15688254‑M2/30‑1 (MQ=255)
                             ccaccGCTCTCGCCGGTGGTCTGCTGGCTGTTccc       <  1:16657015‑M2/30‑1 (MQ=255)
                             ccaccGCTCTCGCCGGTGGTCTGCTGGCTGTTccc       <  1:6219819‑M2/30‑1 (MQ=255)
                             ccaccGCTCTCGCCGGTGGTCTGCTGGCTGTTccc       <  1:12237246‑M2/30‑1 (MQ=255)
                              caccGCTCTCGCCGGTGGTCTGCTGGCTGTTcccc      <  1:15661618‑M2/31‑1 (MQ=255)
                               accGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCt     <  1:19902738‑M2/32‑1 (MQ=255)
                               accGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCt     <  1:13937304‑M2/32‑1 (MQ=255)
                               accGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCt     <  1:14025910‑M2/32‑1 (MQ=255)
                               accGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCt     <  1:2340‑M2/32‑1 (MQ=255)
                               accGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCt     <  1:17521371‑M2/32‑1 (MQ=255)
                                ccGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTg    <  1:493070‑M2/33‑1 (MQ=255)
                                ccGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTg    <  1:11648480‑M2/33‑1 (MQ=255)
                                ccGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTg    <  1:13344278‑M2/33‑1 (MQ=255)
                                  gCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCa  <  1:2171927/35‑1 (MQ=255)
                                  gCTCTCGCCGGTGGTCTGATGGCTGTTCCCCTGCa  <  1:16143485/35‑1 (MQ=255)
                                  |                                  
CACCTTTGACTCTGTGAAATTTATTCTGACCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTGCA  >  REL606/3002803‑3002871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.