New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 326204 =101 (0.980)10 (0.130) 4/36 NT 14.1% coding (849/1887 nt) prpE predicted propionyl‑CoA synthetase with ATPase domain
?REL606 = 4116137 46 (0.600)intergenic (+15/‑78) katG/yijE catalase/hydroperoxidase HPI(I)/predicted permease

CGGCGCGTAGACGATATACGAATGCCCCACCACCCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/326243‑326204
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccgCTGAACGGGGTCAGATTACAGCAGGTCGAAACGG  <  REL606/4116137‑4116104
                                                                          
CGGCGCGTAGACGATATACGAATGCCCCACCACCC                                         <  1:172398/35‑1
CGGCGCGTAGACGATATACGAATGCCCCACCACCC                                         >  1:12857163/1‑35
CGGCGCGTAGACGATATACGAATGCCCCACCACCC                                         <  1:6963596/35‑1
CGGCGCGTAGACGATATACGAATGCCCCACCACCC                                         >  1:8042215/1‑35
 GGCGCGTAGACGATATACGAATGCCCCACCACCCA                                        >  1:12122391/1‑35
 GGCGCGTAGACGATATACGAATGCCCAACCACCCA                                        <  1:4962766/35‑1
  GCGCGTAGACGATATACGAATGCCCCACCACCCAG                                       >  1:19750103/1‑35
  GCGCGTAGACGATATACGAATGCCCCACCACCCAG                                       >  1:17627994/1‑35
   CGCGTAGACGATATACGAATGCCCCACCACCCCGC                                      >  1:3357747/1‑35
   CGCGTAGACGATATACGAATGCCCCACCACCCAGC                                      >  1:15857100/1‑35
   CGCGTAGACGATATACGAATGCCCCACCACACAGC                                      <  1:1510566/35‑1
    GCGTAGACGATATACGAATGCCCCACCACCCAGCC                                     <  1:17070290/35‑1
     CGTAGACGATATACGAATGCCCCACCACCCAGCCG                                    >  1:16733429/1‑35
     CGTAGACGATATACGAATGCCCCACCACCCAGCCG                                    >  1:14743500/1‑35
     CGTAGACGATATACGAATGCCCCACCACCCAGCCG                                    >  1:5243996/1‑35
                     cccCCCCACCACCCAGCCGCTGAACGGGGTCAGAT                    <  1:19657853/32‑1
                      ccgCCCACCACCCAGCCGCTGAACGGGGTCAGATT                   <  1:15150431/32‑1
                       ctCCCACCACCCAGCCGCTGAACGGGGTCAGATTA                  <  1:11989631/33‑1
                       ccgCCACCACCCAGCCGCTGAACGGGGTCAGATTA                  <  1:13330638/32‑1
                        gCCCAGCACCCAGCCGCTGAACGGGGTCAGATTAC                 <  1:14783956/34‑1
                         aCCACCACCCAGCCGCTGAACGGGGTCAGATTACA                <  1:16142710/34‑1
                         CCCACCACCCAGCCGCTGAACGGGGTCAGATTACA                <  1:2747014/35‑1
                          ccgCCACCCAGCCGCTGAACGGGGTCAGATTACAG               <  1:10739194/32‑1
                          CCACCACCCAGCCGCTGAACGGGGTCAGATTACAG               <  1:6375029/35‑1
                           cgCCACCCAGCCGCTGAACGGGGTCAGATTACAGC              <  1:11827749/33‑1
                           CACCCCCCAGCCGCTGAACGGGGTCAGATTACAGC              <  1:13349467/35‑1
                            agCACCCAGCCGCTGAACGGGGTCAGATTACAGCA             <  1:14322753/33‑1
                            ACCACCCAGCCGCTGAACGGGGTCAGATTACAGCA             <  1:5690320/35‑1
                             CCACCCAGCCGCTGAACGGGGTCAGATTACAGCAG            <  1:16241669/35‑1
                             CCACCCAGCCGCTGAACGGGGTCAGATTACAGCAG            <  1:10113398/35‑1
                             CCACCCAGCCGCTGAACGGGGTCAGATTACAGCAG            <  1:19247344/35‑1
                             CCACCCAGCCGCTGAACGGGGTCAGATTACAGCAG            <  1:7390247/35‑1
                              cgCCCAGCCGCTGAACGGGGTCAGATTACAGCAGG           <  1:16580461/33‑1
                              CACCCGGCCGCTGAACGGGGTCAGATTACAGCAGG           <  1:959558/35‑1
                              CACCCAGCCGCTGAACGGGGTCAGGTTACAGCAGG           <  1:13912201/35‑1
                              CACCCAGCCGCTGAACGGGGTCAGATTACAGCAGG           <  1:8290480/35‑1
                              CACCCAGCCGCTGAACGGGGTCAGATTACAGCAGG           <  1:12151299/35‑1
                               ACCCAGCCGCTGAACGGGGTCAGATTACAGAAGGT          <  1:6894330/35‑1
                                CCCAGCCGCTGAACGGGGTCAGATTACAGCAGGTC         <  1:4978393/35‑1
                                CCCAGCCGCTGAACGGGGTCAGATTACAGCAGGTC         <  1:7143198/35‑1
                                CCCAGCCGCTGAACGGGGTCAGATTACAGCAGGTC         <  1:9950333/35‑1
                                CCCACCCGCTGAACGGGGTCAGATTACAGCAGGTC         <  1:8882106/35‑1
                                 CCAGCCGCTGAACGGGGTCAGATTACAGCAGGTCG        <  1:13824661/35‑1
                                  CAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGA       >  1:8650427/1‑35
                                  CAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGA       >  1:12876655/1‑35
                                  CAGCCGCTGAACGGGGTCAGATTACAGCAGGTCGA       >  1:3308616/1‑35
                                   AGCCGCTGAACGGGGTCAGATTACAGCAGGTCGAA      >  1:12756924/1‑35
                                    GCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAA     <  1:19637470/35‑1
                                    GCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAA     >  1:6182935/1‑35
                                    GCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAA     <  1:13007314/35‑1
                                    GCCGCTGAACGGGGTCAGATTACAGCAGGTCGAAA     >  1:13663855/1‑35
                                     CCGCTGAGCGGGGTCAGATTACAGCAGGTCGAAAC    <  1:4960235/35‑1
                                     CCGCTGAACGGGGTCAGATTACAGCATGTCGAAAC    >  1:9887167/1‑35
                                     CCGCTGAACGGGGTCAGATTACAGCAGTTCGAAAC    >  1:4224071/1‑35
                                     CCGCTGAACGGGGTCAGATTACAGCAGGTCGAAAC    <  1:10103973/35‑1
                                     CCGCTGAACGGGGTCAGATTACAGCAGGTCGAAAC    <  1:11041670/35‑1
                                     CCGCTGAACGGGGTCAGATTACAGCAGGTCGAAAC    <  1:13272372/35‑1
                                     CCGCTGAACGGGGTCAGATTACAGCAGGTCGAAAC    >  1:17472734/1‑35
                                     CCGCTGAACGGGGTCAGATTACAGCAGGTCGAAAC    >  1:19298448/1‑35
                                     CCGCTGAACGGGGTCAGATTACAGCAGGTCGAAAC    >  1:13955956/1‑35
                                     CCGCTGAACGGGGTCAGATTACAGCAGGTCGAAAC    >  1:1673714/1‑35
                                      CGCTGAACGGGGTCAGATTACAGCAGGTCGAAACG   <  1:18178337/35‑1
                                      CGCTGAACGGGGTCAGATTACAGCAGGTCGAAACG   >  1:10796522/1‑35
                                      CGCTGAACGGGGTCAGATTACAGCAGGTCGAAACG   <  1:19690516/35‑1
                                      CGCTGAACGGGGTCAGATTACAGCAGGTCGAAACG   >  1:1232172/1‑35
                                      CGCTGAACGGGGTCAGATTACAGCAGGTCGAAACG   >  1:2298412/1‑35
                                      CGCTGAACGGGGTCAGATTACAGCAGGTCGAAACG   >  1:6229989/1‑35
                                      CGCTGAACGGGGTCAGATTACAGCAGGTCGAAACG   <  1:5653617/35‑1
                                      CGCGGAACGGGGTCAGATTACAGCAGGTCGAAACG   <  1:2461309/35‑1
                                       GCTGAACGGGGTCAGATTACAGCAGGTCGAAACGG  >  1:12702239/1‑35
                                       GCTGAACGGGGTCAGATTACAGCAGGTCGAAACGG  <  1:10399496/35‑1
                                       GCTGAACGGGGTCAGATTACAGCAGGTCGAAACGG  >  1:17309337/1‑35
                                       GCTGAACGGGGTCAGATTACAGCAGGTCGAAACGG  >  1:10384505/1‑35
                                       GCTGAACGGGGTCAGATTACAGCAGGTCGAAACGG  >  1:13861614/1‑35
                                       GCTGAACGGGGTCAGATTACAGCAGGTCGAAACGG  >  1:4173189/1‑35
                                                                          
CGGCGCGTAGACGATATACGAATGCCCCACCACCCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/326243‑326204
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccgCTGAACGGGGTCAGATTACAGCAGGTCGAAACGG  <  REL606/4116137‑4116104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.