New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 64299484 (0.820)9 (0.110) 4/38 NT 12.4% intergenic (‑195/+14) lipA/ybeF lipoyl synthase/predicted DNA‑binding transcriptional regulator
?REL606 967183 = 61 (0.750)coding (423/591 nt) ycaK hypothetical protein

Only 100 of 134 total aligned reads displayed.

GAGGAGACAAAGAATCATTTGTCCAGATGGGCTGGGAAAAAAATATAAGCGATTATTTAAAAAATATGT  >  REL606/967149‑967217
                                  |                                  
tgccattttatcgttctgcgctgtgatctggctgg                                    >  1:17960374‑M2/35‑35 (MQ=255)
gaggagACAAAGAATCATTTGTCCAGATGGGCTgg                                    >  1:10292901/1‑35 (MQ=255)
gaggagACAAAGAATCATTTGTCCAGATGGGCTgg                                    >  1:20354464/1‑35 (MQ=255)
gaggagACAAAGAATCATTTGTCCAGATGGGCTgg                                    <  1:16697019/35‑1 (MQ=255)
 gccattttatcgttctgcgctgtgatctggctggg                                   >  1:17373698‑M2/34‑35 (MQ=255)
 aggagACAAAGAATCATTTTTCCAGATGGGCTggg                                   >  1:1550860/1‑35 (MQ=255)
 aggagACAAAGAATCATTTGTCCAGATGNGCTggg                                   <  1:516827/35‑1 (MQ=255)
 aggagACAAAGAATCATTTGTCCAGATGGGCTggg                                   >  1:18850568/1‑35 (MQ=255)
  ggagACAAAGAATCATTTGTCCAGATGGGCTGGGa                                  <  1:9062281/35‑1 (MQ=255)
  ggagACAAAGAATCATTTGTCCAGATGGGCTGGGa                                  >  1:16558640/1‑35 (MQ=255)
  ggagACAAAGAATCATTTGTCCAGATGGGCTGGGa                                  >  1:12552704/1‑35 (MQ=255)
  ggagACAAAGAATCATTTGTCCAGATGGGCTGGGa                                  <  1:11661548/35‑1 (MQ=255)
  ggagACAAAGAATCATTTGTCCAGATGGGCTGGGa                                  <  1:10198087/35‑1 (MQ=255)
   gtgaCAAAGAATCATTTGTCCAGATGGGCTGGGaa                                 >  1:11640040/3‑35 (MQ=255)
   gagaCAAAGAATCATTTGTCCAGATGGGCTGGGaa                                 <  1:329180/35‑1 (MQ=255)
   gagaCAAAGAATCATTTGTCCAGATGGGCTGGGaa                                 <  1:12206346/35‑1 (MQ=255)
   cattttatcgttctgcgctgtgatctggctggaac                                 >  1:14190145‑M2/32‑32 (MQ=255)
    agaCAAAGAATCATTTGTCCAGATGGGCTGGGaaa                                <  1:6666081/35‑1 (MQ=255)
    agaCAAAGAATCATTTGTCCAGATGGGCTGGGaaa                                <  1:16590636/35‑1 (MQ=255)
    agaCAAAGAATCATTTGTCCAGATGGGCTGGGaaa                                >  1:15326543/1‑35 (MQ=255)
    agaCAAAGAATCATTTGTCAAGATGGGCTGGGaaa                                <  1:10925526/35‑1 (MQ=255)
      tttatcgttctgcgctgtgatctggctgGGaaaaa                              >  1:4799175‑M2/29‑35 (MQ=255)
      aCAAAGAATCATTTGTCCAGATGGGCTGGGaaaaa                              <  1:8108818/35‑1 (MQ=255)
      aCAAAGAATCATTTGTCCAGATGGGCTGGGaaaaa                              <  1:14403321/35‑1 (MQ=255)
       ttatcgttctgcgctgtgatctggctgGTaaaaaa                             >  1:20525288‑M2/28‑35 (MQ=255)
       ttatcgttctgcgctgtgatctggctgGGaaaaaa                             >  1:703448‑M2/28‑35 (MQ=255)
       cAAAGAATCATTTGTCCAGATGGGCTGGGaaaaaa                             >  1:11217960/1‑35 (MQ=255)
       cAAAGAATCATTTGTCCAGATGGGCTGGGaaaaaa                             <  1:11523688/35‑1 (MQ=255)
       cAAAGAATCATTTGTCCAGATGGGCTGGGaaaaaa                             <  1:913342/35‑1 (MQ=255)
       cAAAGAATCATTTGTCCAGATGGGCTGGGaaaaaa                             <  1:12859040/35‑1 (MQ=255)
        aaaGAATCATTTGTCCAGATGGGCTGGGaaaaaaa                            <  1:20366208/35‑1 (MQ=255)
         atcgttctgcgctgtgatctggctgGGAAAAAAat                           >  1:3924247‑M2/26‑35 (MQ=255)
         aaGAATCATTTGTCCAGATGGGCTGGGAAAAAAat                           <  1:3599802/35‑1 (MQ=255)
         aaGAATCATTTGTCCAGATGGGCTGGGAAAAAAat                           <  1:20496572/35‑1 (MQ=255)
         aaGAATCATTTGTCCAGATGGGCTGGGAAAAAAat                           <  1:16742058/35‑1 (MQ=255)
         aaGAATCATTTGTCCAGATGGGCTGGGAAAAAAat                           >  1:2141480/1‑35 (MQ=255)
         aaGAATCATTTGTCAAGATGGGCTGGGAAAAAAat                           <  1:7811622/35‑1 (MQ=255)
          aGAATCATTTGTCCAGATGGGCTGGGaaaaaaaag                          >  1:19482425/1‑33 (MQ=255)
           gAATCATTTGTCCAGATGGGCTGGGAAAAAAatat                         <  1:15261962/35‑1 (MQ=255)
           gAATCATTTGTCCAGATGGGCTGGGAAAAAAatat                         >  1:17053162/1‑35 (MQ=255)
            gttctgcgctgtgatctggctgGGAAAaaaatttt                        >  1:16201907‑M2/23‑32 (MQ=255)
            aaTCATTTGTCCAGATGGGCTGGGAAAAAAAtata                        <  1:2256822/35‑1 (MQ=255)
            aaTCATTTGTCCAGATGGGCTGGGAAAAAAAtata                        >  1:4148370/1‑35 (MQ=255)
             aTCATTTGTCCAGATGGGCTGGGAAAAAAATATaa                       <  1:7189162/35‑1 (MQ=255)
             aTCATTTGTCCAGATGGGCTGGGAAAAAAATATaa                       <  1:15091881/35‑1 (MQ=255)
               cATTTGTCCAGATGGGCTGGGAAAAAAATATAAGc                     <  1:1599090/35‑1 (MQ=255)
                aTTTGTCCAGATGGGCTGGGAAAAAAATATAAGCg                    <  1:20516612/35‑1 (MQ=255)
                aTTTGTCCAGATGGGCTGGGAAAAAAATATAAGCg                    <  1:4701945/35‑1 (MQ=255)
                aTTTGTCCAGATGGGCTGGGAAAAAAATATAAGCg                    <  1:7901859/35‑1 (MQ=255)
                aTTTGTCCAGATGGGCTGGGAAAAAAATATAAGCg                    <  1:18819270/35‑1 (MQ=255)
                aTTTGTCCAGATGGGCTGGGAAAAAAATATAAGCg                    <  1:17833746/35‑1 (MQ=255)
                 tttGTCCAGATGGGCTGGGAAAAAAATATAAGCGa                   <  1:9353151/35‑1 (MQ=255)
                 tttGTCCAGATGGGCTGGGAAAAAAATATAAGCGa                   >  1:10441762/1‑35 (MQ=255)
                 tttGTCCAGATGGGCTGGGAAAAAAATATAAGCGa                   <  1:17820879/35‑1 (MQ=255)
                   tGTCCAGATGGGCTGGGAAAAAAATATAAGCGatt                 <  1:20327879/35‑1 (MQ=255)
                   tGTCCAGATGGGCTGGGAAAAAAATATAAGCGatt                 >  1:5068945/1‑35 (MQ=255)
                    gTCCAGATGGGCTGGGAAAAAAATATAAGCGatta                <  1:29229/35‑1 (MQ=255)
                    gTCCAGATGGGCTGGGAAAAAAATATAAGCGatta                >  1:9891928/1‑35 (MQ=255)
                    gTCCAGATGGGCTGGGAAAAAAATATAAGCGatta                <  1:2346655/35‑1 (MQ=255)
                    gTCCAGATGGGCTGGGAAAAAAATATAAGCGatta                >  1:5997335/1‑35 (MQ=255)
                     tCCAGATGGGCTGGGAAAAAAATATAAGCGattat               >  1:15678871/1‑35 (MQ=255)
                     tCCAGATGGGCTGGGAAAAAAATATAAGCGattat               <  1:17959174/35‑1 (MQ=255)
                     tCCAGATGGGCTGGGAAAAAAATATAAGCGattat               >  1:10841472/1‑35 (MQ=255)
                     tCCAGATGGGCTGGGAAAAAAATATAAGCGattat               <  1:13519459/35‑1 (MQ=255)
                     tCCAGATGGGCTGGGAAAAAAATATAAGCGattat               <  1:15628963/35‑1 (MQ=255)
                      ccAGATGTGCTGGGAAAAAAATATAAGCGattatt              >  1:16010292/1‑35 (MQ=255)
                      ccAGATGGGCTGGGAAAAAAATATAAGCGattatt              <  1:6021024/35‑1 (MQ=255)
                       cAGATGGGCTGGGAAAAAAATATAAGCGATTAttt             <  1:6818804/35‑1 (MQ=255)
                       cAGATGGGCTGGGAAAAAAATATAAGCGATTAttt             <  1:6697527/35‑1 (MQ=255)
                       cAGATGGGCTGGGAAAAAAATATAAGCGATTAttt             <  1:16933796/35‑1 (MQ=255)
                        aGATGGGCTGGGAAAAAAATATAAGCGATTATTTa            <  1:1589757/35‑1 (MQ=255)
                        aGATGGGCTGGGAAAAAAATATAAGCGATTATTTa            <  1:7340606/35‑1 (MQ=255)
                        aGATGGGCTGGGAAAAAAATATAAGCGATTATTTa            <  1:4889949/35‑1 (MQ=255)
                        aGATGGGCTGGGAAAAAAATATAAGCGATTATTTa            <  1:5138899/35‑1 (MQ=255)
                         gATGGGCTGGGAAAAAAATATAAGCGATTATTTaa           <  1:11196111/35‑1 (MQ=255)
                         gATGGGCTGGGAAAAAAATATAAGCGATTATTTaa           >  1:9407129/1‑35 (MQ=255)
                         gATGGGCTGGGAAAAAAATATAAGCGATTATTTaa           <  1:8609075/35‑1 (MQ=255)
                         gATGGGCTGGGAAAAAAATATAAGCGATTATTTaa           >  1:5198279/1‑35 (MQ=255)
                          aTGGGCTGGGAAAAAAATATAAGCGATTATTTaaa          >  1:13837222/1‑35 (MQ=255)
                          aTGGGCTGGGAAAAAAATATAAGCGATTATTTaaa          <  1:5186148/35‑1 (MQ=255)
                          aTGGGCTGGGAAAAAAATATAAGCGATTATTTaaa          <  1:5551619/35‑1 (MQ=255)
                          aTGGGCTGGGAAAAAAATATAAGCGATTATTTaaa          >  1:12349168/1‑35 (MQ=255)
                           tGGGCTGGGAAAAAAATATAAGCGATTATTTaaaa         >  1:1469364/1‑35 (MQ=255)
                           tGGGCTGGGAAAAAAATATAAGCGATTATTTaaaa         <  1:2011981/35‑1 (MQ=255)
                            gggCTGGGAAAAAAATATAAGCGATTATTTaaaaa        >  1:9912634/1‑35 (MQ=255)
                            gggCTGGGAAAAAAATATAAGCGATTATTTaaaaa        >  1:3235768/1‑35 (MQ=255)
                            gggCTGGGAAAAAAATATAAGCGATTATTTaaaaa        >  1:16930805/1‑35 (MQ=255)
                            gggCTGGGAAAAAAATATAAGCGATTATTTaaaaa        <  1:16692206/35‑1 (MQ=255)
                            gggCTGGGAAAAAAATATAAGCGATTATTTaaaaa        >  1:11364786/1‑35 (MQ=255)
                             ggctgGGAAAAAAATATAAGCGATTATTTaaaaaa       <  1:2619710‑M2/30‑1 (MQ=255)
                             ggctgGGAAAAAAATATAAGCGATTATTTaaaaaa       >  1:19133477‑M2/6‑35 (MQ=255)
                             ggctgGGAAAAAAATATAAGCGATTATTTaaaaaa       >  1:18608557‑M2/6‑35 (MQ=255)
                              gctgGGAAAAAAATATAAGCGATTATTTAAAAAat      >  1:5182388‑M2/5‑35 (MQ=255)
                              gctgGGAAAAAAATATAAGCGATTATTTAAAAAat      <  1:12946803‑M2/31‑1 (MQ=255)
                              gctgGGAAAAAAATATAAGCGATTATTTAAAAAat      >  1:10491770‑M2/5‑35 (MQ=255)
                               ctgGGAAAAAAATATAAGCGATTATTTAAAAAata     <  1:14802851‑M2/32‑1 (MQ=255)
                                tgGGAAAAAAATATAAGCGATTATTTAAAAAatat    <  1:46747‑M2/33‑1 (MQ=255)
                                tgGGAAAAAAATATAAGCGATTATTTAAAAAatat    >  1:3036409‑M2/3‑35 (MQ=255)
                                tgGGAAAAAAATATAAGCGATTATTTAAAAAatat    <  1:9418802‑M2/33‑1 (MQ=255)
                                  ggAAAAAAATATAAGCGATTATTTAAAAAATAtgt  >  1:13898978/1‑35 (MQ=255)
                                  |                                  
GAGGAGACAAAGAATCATTTGTCCAGATGGGCTGGGAAAAAAATATAAGCGATTATTTAAAAAATATGT  >  REL606/967149‑967217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.