New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1510513 = | 81 (0.790) | 16 (0.210) | 4/36 | NT | 22.7% | coding (256/681 nt) | narV | nitrate reductase 2 (NRZ), gamma subunit |
? | REL606 | 4138913 = | 48 (0.620) | coding (563/918 nt) | oxyR | DNA‑binding transcriptional dual regulator |
ACGCCGCACTGGATGTACGCGTGGTTTTTGCCAGTGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1510552‑1510513 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcagGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG > REL606/4138913‑4138946 ACGCCGCACTGGATGTACGCGTGGTTTTTGCCAGT < 1:9430911/35‑1 ACGCCGCACTGGATGTACGCGTGGTTTTTGCCAGT < 1:8011678/35‑1 ACGCCGCACTGGATGTACGCGTGGTTTTTGCCAGT < 1:12529368/35‑1 ACGCCGCACTGGATGTACGCGTGGTTTTTGCCAGT < 1:5980623/35‑1 ACGCCGCACTGGATGTACGCGTGGGTTTTGCCAGT > 1:9244112/1‑35 CGCCGCACTGGATGTACGCGTGGTTTTTGCCAGTG > 1:17451309/1‑35 GCCGCACTGGATGTACGCGTGGGTTTTGCCAGTGG > 1:15738474/1‑35 CCGCACTGGATGTACGCGTGGTTTTTGCCAGTGGC < 1:4020942/35‑1 CCGCACTGGATGTACGCGTGGTTTTTGCCAGTGGC < 1:13433686/35‑1 CCGCACTGGATGTACGCGTGGTTTTTGCCAGTGGC < 1:4111008/35‑1 CCGAACTGGATGTACGCGTGGTTTTTGCCAGTGGC < 1:8027255/35‑1 CGCACTGGATGTACGCGTGGTTTTTGCCAGTGGCA > 1:16521322/1‑35 CGCACTGGATGTACGCGTGGTTTTTGCCAGTGGCA < 1:16297615/35‑1 CGCACTGGATGTACGCGTGGTTTTTGCCAGTGGCA < 1:9996839/35‑1 CGCAATGGATGTACGCGTGGTTTTTGCCAGTGGCA < 1:18699297/35‑1 CTGGATGTACGCGTGGTTTTTGCCAGTGGCAGGGG > 1:6992413/1‑35 CTGGATGTACGCGTGGTTTTTGCCAGTGGCAGGGG > 1:14286753/1‑35 CTGGATGTACGCGTGGTTTTTGCCAGTGGCAGGGG > 1:14217289/1‑35 TGGATGTACGCGTGGTTTTTGCCAGTGGCAGGGGg > 1:18372490/1‑34 TGGATGTACGCGTGGTTTTTGCCAGTGGCAGGGGA > 1:9157695/1‑35 TGGATGTACGCGTGGTTTTTGCCAGTGGCAGGGGA > 1:13793872/1‑35 GGATGTACGCGTGGTTTTTGCCAGTGGCAGGGGAA > 1:4731753/1‑35 GGATGTACGCGTGGTTTTTGCCAGTGGCAGGGGAA > 1:17728732/1‑35 GGATGTACGCGTGGTTTTTGCCAGTGGCAGGGAAA > 1:155723/1‑35 GATGTACGCGTGGTTTTTGCCAGTGGCAGGGGAAA > 1:15532137/1‑35 ATGTACGCGTGGTTTTTGCCAGTGGCAGGGGGAAA > 1:15076180/1‑35 ATGTACGCGTGGTTTTTGCCAGTGGCAGGGGGAAA > 1:18815260/1‑35 ATGTACGCGTGGTTTTTGCCAGTGGCAGGGGAAca > 1:4848659/1‑33 ATGTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAA > 1:16175088/1‑35 ATGTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAA > 1:5168016/1‑35 TGTACGCGTGGTTTTTGCCAGTGGCAGGGGAACAA > 1:6488679/1‑35 TGTACGCGTGGTTTTTGCCAGTGGCAGGGGAACAA > 1:10833670/1‑35 TGTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAA > 1:4055017/1‑35 TGTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAA > 1:15300945/1‑35 GTACGCGTGGTTTTTGCCAGTGGCAGGGGAACAAa > 1:9065543/1‑34 GTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAAa > 1:18051292/1‑34 GTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAAC > 1:3218785/1‑35 GTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAAC > 1:18133548/1‑35 TACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAAat > 1:19363183/1‑33 TACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAAat > 1:13470823/1‑33 TACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAAac > 1:16273286/1‑33 TGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGT > 1:2605623/1‑35 TGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGT > 1:17391189/1‑35 GGCAGTGGAAAAACTGCTGATGCTGGAAGATGGTC > 1:14774237/1‑35 GGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTC > 1:8323569/1‑35 GGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTC > 1:8532936/1‑35 GGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTC < 1:6353235/35‑1 GGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTC < 1:15615304/35‑1 GGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTC < 1:15790327/35‑1 GCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCA < 1:12415044/35‑1 CAGGGGAAAAACTGCTGATGCTGGAAGATGGTCAC > 1:8678283/1‑35 CAGGGGAAAAACTGCTGATGCTGGAAGATGGTCAC < 1:14770637/35‑1 CAGGGGAAAAACTGCTGATGCTGGAAGATGGTCAC < 1:3038203/35‑1 CAGGGGAAAAACTGCTGATGCTGGAAGATGGTCAC > 1:11399177/1‑35 AGGGGAAAACCTGCTGATGCTGGAAGATGGTCACT < 1:19831934/35‑1 AGGGGAAAAACTGCTGATGCTGGAAGATGGTGACT < 1:13699389/35‑1 AGGGGAAAAACTGCTGATGCTGGAAGATGGTCACT > 1:5665835/1‑35 AGGGGAAAAACTGCTGATGCTGGAAGATGGTCACT > 1:5554757/1‑35 AGGGGAAAAACTGCTGATGCTGGAAGATGGTCACT > 1:4030228/1‑35 AGGGGAAAAACTGCTGATGCTGGAAGATGGTCACT > 1:10045599/1‑35 GGGGAAAACCTGCTGATGCTGGAAGATGGTCACTG < 1:7880410/35‑1 GGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG > 1:18648749/1‑35 GGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG < 1:12228879/35‑1 ACGCCGCACTGGATGTACGCGTGGTTTTTGCCAGTGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1510552‑1510513 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcagGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG > REL606/4138913‑4138946 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |