New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3820609 = | 84 (0.820) | 7 (0.100) | 3/34 | NT | 12.1% | coding (425/924 nt) | yidL | predicted DNA‑binding transcriptional regulator |
? | REL606 | = 4248913 | 42 (0.580) | coding (568/714 nt) | aphA | acid phosphatase/phosphotransferase, class B, non‑specific |
TTCAGCAACTTCAGTGAGTTCCTGATTATAAATTTCGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3820649‑3820609 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccatAAAAAATTCGGATATTTTTATCCTGCAGCCATTG < REL606/4248913‑4248880 TTCAGCAACTTCAGTGAGTTCCTGATTATAAATTT < 1:9716009/35‑1 TTCAGCAACTTCAGTGAGTTCCTGATTATAAATTT > 1:1734467/1‑35 TCAGCAACTTCAGTGAGTTCCTGATTATAAATTTC < 1:9559782/35‑1 TCAGCAACTTCAGTGAGTTCCTGATTATAAATTTC < 1:3206827/35‑1 TCAGCAACTTCAGTGAGTTCCTGATTATAAATTTC < 1:5130274/35‑1 TCAGCAACTTCAGTGAGTTCCTGATTATAAATTTC > 1:16234060/1‑35 TCAGCAACTTCAGTGAGTTCCTGATTATAAATTTC < 1:8192575/35‑1 TCAGCAACTTCAGTGAGTTCATGATTATAAATTTC < 1:15813567/35‑1 CAGCAACTTCAGTGAGTTCCTGATTATAAATTTCG < 1:4459323/35‑1 CAGCAACTTCAGTGAGTTCCTGATTATAAATTTCG > 1:19230595/1‑35 CAGCAACTTCAGTGAGTTCCTGATTATAAATTTCG > 1:18181682/1‑35 CAGCAACTTCAGTGAGTTCCTGATTATAAATTTCG < 1:17888651/35‑1 CAGCAACTTCAGTGAGTTCCTGATTATAAATTTCG > 1:17732226/1‑35 AGCAACTTCAGTGAGTTCCTGATTATAAATTTCGC > 1:4279660/1‑35 AGCAACTTCAGTGAGTTCCTGATTATAAATTTCGC > 1:3275426/1‑35 AGCAACTTCAGTGAGTTCCTGATTATAAATTTCGC > 1:3231685/1‑35 AGCAACTTCAGTGAGTTCCTGATTATAAATTTCGC > 1:10075964/1‑35 AGCAACTTCAGTGAGTTCCTGATTATAAATTTCGC < 1:13160153/35‑1 AGCAACTTCAGTGAGTTCCTGATTATAAATTTCGC < 1:13634113/35‑1 GCAACTTCAGTGAGTTCCTGATTATAAATTTCGCC < 1:9825054/35‑1 GCAACTTCAGTGAGTTCCTGATTATAAATTTCGCC > 1:17946787/1‑35 GCAACTTCAGTGAGTTCCTGATTATAAATTTCGCC > 1:17827714/1‑35 GCAACTTCAGTGAGTTCCTGATTATAAATTTCGCC < 1:7088892/35‑1 CAACTTCAGTGAGTTCCTGATTATAAATTTCGCCA > 1:10509807/1‑35 CAACTTCAGTGAGTTCCTGATTATAAATTTCGCCA > 1:10725582/1‑35 CAACTTCAGTGAGTTCCTGATTATAAATTTCGCCA > 1:8616836/1‑35 CAACTTCAGTGAGTTCCTGATTATAAATTTCGCCA < 1:2304682/35‑1 AACTTCAGTGAGTTCCTGATTATAAATTTCGCCAT > 1:7343612/1‑35 AACTTCAGTGAGTTCCTGATTATAAATTTCGCCAT > 1:1507088/1‑35 AACTTCAGTGAGTTCCTGATTATAAATTTCGCCAT > 1:5561779/1‑35 aATTATAATTTTCGCCATAAAAAATTCGGATATTT < 1:14121080/34‑1 aATTATAAGTTTCGCCATAAAAAATTCGGATATTT < 1:15657991/34‑1 ATTATAATTTTCGCCATAAAAAATTCGGATATTTT < 1:5475791/35‑1 ATTATAATTTTCGCCATAAAAAATTCGGATATTTT < 1:13713380/35‑1 TATAATTTTCGCCATAAAAAATTCGGATATTTTTA < 1:7664345/35‑1 tTAATTTTCGCCATAAAAAATTCGGATATTTTTAT < 1:14252996/34‑1 ATAATTTTCGCCATAAAAAATTCGGATATTTTTAT < 1:5860789/35‑1 ATTTCGCCATAAAAAATTCGGATATTTTTATCCTG < 1:838534/35‑1 TTTCGCCATAAAAAATTCGGATATTTTTATCCTGC < 1:9325125/35‑1 gTCGCCATAAAAAATTCGGATATTTTTATCCTGCA < 1:9471682/34‑1 TTCGCCATAAAAAATTCGGATATTTTTATCCTGCA < 1:14047611/35‑1 TTCGCCATAAAAAATTCGGATATTTTTATCCTGCA < 1:19507092/35‑1 TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG > 1:9602989/1‑35 TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG > 1:11191661/1‑35 TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG > 1:5542878/1‑35 TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG < 1:17392060/35‑1 TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG > 1:17078098/1‑35 TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG < 1:7842982/35‑1 TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG < 1:16062957/35‑1 CGCCATAAAAAATTCGGATATTTTTATCCTGCAGC > 1:14941281/1‑35 CGCCATAAAAAATTCGGATATTTTTATCCTGCAGC > 1:3972729/1‑35 GCCATAAAAAATTCGGATATTTTTATCCTGCAGCC > 1:15086578/1‑35 GCCATAAAAAATTCGGATATTTTTATCCTGCAGCC > 1:1973674/1‑35 CCATAAAAAATTCGGATATTTTTATCCTGCAGCCA < 1:18581216/35‑1 CCATAAAAAATTCGGATATTTTTATCCTGCAGCCA < 1:9399895/35‑1 CCATAAAAAATTCGGATATTTTTATCCTGCAGCCA < 1:10018677/35‑1 CATAAAAAATTCGGATATTTTTATCCTGCAGCCAT > 1:721411/1‑35 CATAAAAAATTCGGATATTTTTATCCTGCAGCCAT > 1:1594552/1‑35 CATAAAAAATTCGGATATTTTTATCCTGCAGCCAT > 1:13956868/1‑35 CATAAAAAATTCGGATATTTTTATCCTGCAGCCAT > 1:3752440/1‑35 CATAAAAAATTCGGATATTTTTATCCTGCAGCAAT < 1:16605262/35‑1 ATAAAAAATTCGGATATTTTTATCCTGCAGCCATT > 1:7770036/1‑35 ATAAAAAATTCGGATATTTTTATCCTGCAGCCATT > 1:9767262/1‑35 TAAAAAATTCGGATATTTTTATCCTGCAGCCATTG > 1:10258965/1‑35 TTCAGCAACTTCAGTGAGTTCCTGATTATAAATTTCGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3820649‑3820609 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccatAAAAAATTCGGATATTTTTATCCTGCAGCCATTG < REL606/4248913‑4248880 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |