New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 640115 = | 106 (1.030) | 28 (0.380) | 5/34 | NT | 24.6% | intergenic (+33/+22) | cspE/ccrB | cold shock protein E/camphor resistance protein CrcB |
? | REL606 | 2746531 = | 97 (1.330) | coding (671/873 nt) | hypB | GTP hydrolase involved in nickel liganding into hydrogenases |
Only 100 of 272 total aligned reads displayed.
AAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGG‑TTTTTTTTTGGTCTTTAGTGTGCGGTT > REL606/640081‑640149 | atcagcgaggcggcggcaaacatatgcggatattt < 1:8133779‑M1/1‑1 (MQ=255) atcagcgaggcggcggcaaacatatgcggatattt < 1:3808837‑M1/1‑1 (MQ=255) atcagcgaggcggcggcaaacatatgcggatattt > 1:18105474‑M1/35‑35 (MQ=255) atcagcgaggcggcggcaaacatatgcggatattt > 1:13047306‑M1/35‑35 (MQ=255) aGATACGTCAGCAAGAATTCAAAACCCGCTTAATc > 1:10102690/1‑35 (MQ=255) aGATACGTCAGCAAGAATTCAAAACCCGCTTAATc < 1:13567678/35‑1 (MQ=255) aGATACGTCAGCAAGAATTCAAAACCCGCTTAATc < 1:12433079/35‑1 (MQ=255) gATACGTCAGCAAGAATTCAAAACCCGCTTAATCa < 1:18704850/35‑1 (MQ=255) gATACGTCAGCAAGAATTCAAAACCCGCTTAATCa < 1:5092554/35‑1 (MQ=255) gATACGTCAGCAAGAATTCAAAACCCGCTTAATCa > 1:2067901/1‑35 (MQ=255) gATACGTCAGCAAGAATTCAAAACCCGCTTAATCa < 1:11682551/35‑1 (MQ=255) cagggaggcggcggcaaacatatgcggatattTCa > 1:19776058‑M1/33‑35 (MQ=255) cagcgaggcggcggcaaacatatgcggatattttc < 1:13323487‑M1/3‑3 (MQ=255) cagcgaggcggcggcaaacatatgcggatattTCa > 1:4141922‑M1/33‑35 (MQ=255) cagcgaggcggcggcaaacatatgcggatattTCa < 1:3704577‑M1/3‑1 (MQ=255) cagcgaggcggcggcaaacatatgcggatattTCa > 1:7138718‑M1/33‑35 (MQ=255) cagcgaggcggcggcaaacatatgcggatattTCa < 1:6436837‑M1/3‑1 (MQ=255) agcgaggcggcggcaaacatatgcggatattTCAg > 1:15307953‑M1/32‑35 (MQ=255) agcgaggcggcggcaaacatatgcggatattTCAg > 1:8692796‑M1/32‑35 (MQ=255) aTACGTCAGCAAGAATTCAAAACCCGCTTAATCAg > 1:6953098/1‑35 (MQ=255) aTACGTCAGCAAGAATTCAAAACCCGCTTAATCAg < 1:10151038/35‑1 (MQ=255) tACGTCAGCAAGAATTCAAAACCCGCTTAATCAGc < 1:20582704/35‑1 (MQ=255) tACGTCAGCAAGAATTCAAAACCCGCTTAATCAGc > 1:10326301/1‑35 (MQ=255) gcgaggcggcggcaaacatatgcggatattTCAGc < 1:3896212‑M1/5‑1 (MQ=255) gcgaggcggcggcaaacatatgcggatattTCAGc > 1:1992585‑M1/31‑35 (MQ=255) gcgaggcggcggcaaacatatgcggatataTCAGc > 1:1392522‑M1/31‑35 (MQ=255) cgaggcggcggcaaacatatgcggatattTTAGCg < 1:5835279‑M1/6‑1 (MQ=255) cgaggcggcggcaaacatatgcggatattTCAGCg > 1:1794881‑M1/30‑35 (MQ=255) cgaggcggcggcaaacatatgcggatattTCAGCg > 1:4506052‑M1/30‑35 (MQ=255) cgaggcggcggcaaacatatgcggatattTCAGCg > 1:3225589‑M1/30‑35 (MQ=255) gaggcggcggcaaacatatgcggatattTCAGCgg > 1:16052386‑M1/29‑35 (MQ=255) gaggcggcggcaaacatatgcggatattTCAGCgg > 1:17040267‑M1/29‑35 (MQ=255) cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg < 1:16391849/35‑1 (MQ=255) cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg > 1:7223213/1‑35 (MQ=255) cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg > 1:9491945/1‑35 (MQ=255) cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg < 1:11360605/35‑1 (MQ=255) gTCAGCAAGAATTCAAAACCCGCTTAATCAGCggg < 1:14180358/35‑1 (MQ=255) gTCAGCAAGAATTCAAAACCCGCTTAATCAGCggg > 1:6767447/1‑35 (MQ=255) aggcggcggcaaacatatgcggatattTCAGCggg < 1:1508468‑M1/8‑1 (MQ=255) tCAGCAAGAATTCAAAACCCGCTTAATCAGCGGG‑t < 1:5557492/35‑1 (MQ=255) cAGCAAGAATTCAAAACCCGCTTAATCAGCGTG‑tt > 1:247349/1‑35 (MQ=255) cAGCAAGAATTCAAAACCCGCTTAATCAGCGGG‑tt > 1:19522803/1‑35 (MQ=255) cAGCAAGAATTCAAAACCCGCTTAATCAGCGGG‑tt > 1:4015802/1‑35 (MQ=255) cAGCAAGAATTCAAAACCCGCTTAATCAGCGGG‑tt < 1:1732885/35‑1 (MQ=255) cAGCAAGAATTCAAAACCCGCTTAATCAGCGGG‑tt > 1:7750320/1‑35 (MQ=255) aGCAAGAATTCAAAACCAGCTTAATCAGCGGG‑ttt < 1:9474020/35‑1 (MQ=255) gCAAGAATTCAAAACCCGCTTAATCAGCGGG‑tttt < 1:2602891/35‑1 (MQ=255) gCAAGAATTCAAAACCCGCTTAATCAGCGGG‑tttt < 1:2031126/35‑1 (MQ=255) ctaaGAATTCAAAACCCGCTTAATCAGCGGG‑tttt < 1:12147515/33‑1 (MQ=255) gcggcaaacatatgcggatattTCAGCGGG‑ttttt < 1:16216074‑M1/13‑1 (MQ=255) cAAGAATTCAAAACCCGCTTAATCAGCGGG‑ttttt > 1:15600219/1‑35 (MQ=255) cggcaaacatatgcggatattTCAGCGGG‑tttttt < 1:10609030‑M1/14‑1 (MQ=255) aaGAATTCAAAACCCGCTTAATCAGCGGG‑tttttt > 1:9395812/1‑35 (MQ=255) aGAATTCAAAACCCGCTTAATCAGCGGG‑ttttttt < 1:1112012/35‑1 (MQ=255) aGAATTCAAAACCCGCTTAATCAGCGGG‑ttttttt < 1:3362113/35‑1 (MQ=255) gAATTCAAAACCCGCTTAATCAGCGGG‑tttttttt < 1:9191565/35‑1 (MQ=255) gAATTCAAAACCCGCTTAATCAGCGGG‑tttttttt < 1:18727739/35‑1 (MQ=255) gAATTCAAAACCCGCTTAATCAGCGGG‑tttttctt > 1:1360201/1‑35 (MQ=255) caaacatatgcggatattTCAGCGGg‑ttttttttc < 1:15748421‑M1/17‑2 (MQ=255) caaacatatgcggatattTCAGCGGG‑ttttttttt < 1:8477470‑M1/17‑1 (MQ=255) caaacatatgcggatattTCAGCGGG‑ttgtttttt < 1:12019483‑M1/17‑1 (MQ=255) aaTTCAAAACCCGCTTAATCAGCGGG‑ttttttttt > 1:5897836/1‑35 (MQ=255) aaacatatgcggatattTCAGCGGt‑tttttttttc < 1:16724227‑M1/18‑2 (MQ=255) aaacatatgcggatattTCAGCGGg‑ttttcttttc < 1:16310765‑M1/18‑2 (MQ=255) aTTCAAAACCCGCTTAATCAGCGGG‑TTTTTTTTTg > 1:12225714/1‑35 (MQ=255) ttCAAAACCCGCTTAATCAGCGGG‑TTTTTTTTTgg < 1:9878660/35‑1 (MQ=255) aacatatgcggatattTCAGCggg‑ttttttttccc < 1:19852789‑M1/19‑4 (MQ=255) aacatatgcggatattTCAGCggg‑ttttttttatc < 1:15676456‑M1/19‑4 (MQ=255) tCAAAACCCGCTTAATCAGCGGG‑TTTTTTTTTGGt > 1:16772427/1‑35 (MQ=255) cAAAACCCGCTTAATCAGCGGG‑TTTTTTTTTGGTc < 1:4760348/35‑1 (MQ=255) aaaaCCCGCTTAATCAGCGGG‑TTTTTTTTTGGTCt > 1:8035204/1‑35 (MQ=255) aaaaCCCGCTTAATCAGAGGG‑TTTTTTTTTGGTCt < 1:7730201/35‑1 (MQ=255) aaaCCCGCTTAATCAGCGGG‑TTTTTTTTTGGTCtt > 1:3089471/1‑35 (MQ=255) aaaCCCGCTTAATCAGCGGG‑TTTTTTTTTGGTCtt > 1:13765424/1‑35 (MQ=255) aaaCCCGCTTAATCAGCGGG‑TTTTTTTTTGGTCtt < 1:19355405/35‑1 (MQ=255) aaCCCGCTTAATCAGCGGG‑TTTTTTTTTGGTCttt < 1:5196765/35‑1 (MQ=255) aaCCCGCTTAATCAGCGGG‑TTTTTTTTTGGTCttt > 1:5688160/1‑35 (MQ=255) aaCCCGCTTAATCAGCGGG‑TTTTTTTTTGGTCttt < 1:5991872/35‑1 (MQ=255) aaCCCGCTTAATCAGCGGG‑TTTTTTTTTGGTCttt < 1:901301/35‑1 (MQ=255) aaCCAGCTTAATCAGCGGG‑TTTTTTTTTGGTCttt < 1:16453667/35‑1 (MQ=255) aCCCGCTTAATCAGCGGG‑TTTTTTTTTGGTCTTTa < 1:7413941/35‑1 (MQ=255) aCCCGCTTAATCAGCGGG‑TTTTTTTTTGGTCTTTa < 1:8309499/35‑1 (MQ=255) ccGCTTAATCAGCGGGTTTTTTTTTTGGTCTTTAg < 1:4323104/35‑1 (MQ=25) ccGCTTAATCAGCGGG‑TTTTTTTTTGGTCTTTAgt > 1:14692844/1‑35 (MQ=255) ccGCTTAATCAGCGGG‑TTTTTTTTTGGTCTTTAgt < 1:17693314/35‑1 (MQ=255) cTTAATCAGCGGG‑TTTTTTTTTGGTCTTTAGtgtg < 1:1849412/35‑1 (MQ=255) cTTAATCAGCGGG‑TTTTTTTTTGGTCTTTAGtgtg < 1:20340953/35‑1 (MQ=255) cTTAATCAGCGGG‑CTTTTTTTTGGTCTTTAGtgtg > 1:977164/1‑35 (MQ=255) cTTAATCAGCGGG‑‑TTTTTTTTGGTCTTTAGTGTGc < 1:20155151/35‑1 (MQ=38) ttAATCAGCGGG‑TTTTTTTTTGGTCTTTAGTGTGc > 1:1726984/1‑35 (MQ=255) tAATCAGCGGG‑TTTTTTTTTGGTCTTTAGTGTGCg < 1:14482637/35‑1 (MQ=255) tAATCAGCGGG‑TTTTTTTTTGGTCTTTAGTGTGCg < 1:10037311/35‑1 (MQ=255) tAATCAGCGGG‑TTTTTTTTTGGTCTTTAGTGTGCg > 1:7883213/1‑35 (MQ=255) aaTCAGCGGG‑TTTTTTTTTGGTCTTTAGTGTGCgg < 1:18816452/35‑1 (MQ=255) aaTCAGCGGG‑TTTTTTTTTGGTCTTTAGTGTGCgg < 1:18858603/35‑1 (MQ=255) aTCAGCGGG‑TTTTTTTTTGGTCTTTAGTGTGCGGt < 1:1281938/35‑1 (MQ=255) TCAGCGGG‑TTTTTTTTTGGTCTTTAGTGTGCGGtt > 1:17518592‑M1/1‑35 (MQ=255) TCAGCGGG‑TTTTTTTTTGGTCTTTAGTGTGCGGtt < 1:20018450‑M1/35‑1 (MQ=255) TCAGCGGG‑TTTTTTTTTGGTCTTTAGTGTGCGGtt < 1:4280730‑M1/35‑1 (MQ=255) TCAGCGGG‑TTTTTTTTTGGTCTTTAGCGTGCGGtt < 1:4985725‑M1/35‑1 (MQ=255) | AAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGG‑TTTTTTTTTGGTCTTTAGTGTGCGGTT > REL606/640081‑640149 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |