New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2318764 = | 63 (0.610) | 11 (0.140) | 4/36 | NT | 13.6% | coding (1344/1653 nt) | arnT | 4‑amino‑4‑deoxy‑L‑arabinose transferase |
? | REL606 | 4219145 = | 92 (1.190) | intergenic (+483/‑112) | yjbH/yjbA | predicted porin/phosphate‑starvation‑inducible protein PsiE |
TGCGGCAACACCGACGCTATCAGTAAGAATATAGCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2318803‑2318764 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcttTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAA > REL606/4219145‑4219178 TGCGGCAACACCGACGCTATCAGTAAGAATATAGC > 1:18293166/1‑35 TGCGGCAACACCGACGCTATCAGTAAGAATATAGC > 1:12026773/1‑35 TGCGGCAACACCGACGCTATCAGTAAGAATATAGC > 1:15345111/1‑35 TGCGGCAACACCGACGCTATCAGTAAGAATATAGC > 1:15074440/1‑35 GCGGCAACACCGACGCTATCAGTAAGAATATAGCt > 1:17424947/1‑34 GGCAACACCGACGCTATCAGTAAGAATATAGCGGC > 1:1561127/1‑35 GGCAACACCGACGCTATCAGTAAGAATATAGCGGC > 1:18342404/1‑35 GGCAACACCGACGCTATCAGTAAGAATATAGCGGC > 1:12086561/1‑35 GGCAACACCGACGCTATCAGTAAGAATATAGCGGC > 1:2114068/1‑35 GGCAACACCGACGCTATCAGTAAGAATATAGCGGC > 1:12718920/1‑35 GCAACACCGACGCTATCAGTAAGAATATAGCTGCT > 1:19901269/1‑35 GCAACACCGACGCTATCAGTAAGAATATAGCGGgt > 1:1166772/1‑33 GCAACACCGACGCTATCAGTAAGAATATAGCGGCT > 1:20308698/1‑35 CAACACCGACGCTATCAGTAAGAATATAGCGGCTT > 1:2408775/1‑35 CAACACCGACGCTATCAGTAAGAATATAGCGGCTT > 1:19708730/1‑35 CAACACCGACGCTATCAGTAAGAATATAGCGGCTT > 1:5983052/1‑35 AACACCGACGCTATCAGTAAGAATATAGCGGCTTT > 1:19428656/1‑35 AACACCGACGCTATCAGTAAGAATATAGCGGCTTT > 1:5433924/1‑35 ACAGCGACGCTATCAGTAAGAATATAGCGGCTTTt > 1:17412991/1‑34 ACACCGACGCTATCAGTAAGAATATAGCGGCTTTG > 1:12354676/1‑35 ACACCGACGCTATCAGTAAGAATATAGCGGCTTTG > 1:12079732/1‑35 ACACCGACGCTATCAGTAAGAATATAGCGGCTTTG > 1:11751853/1‑35 ACACCGACGCTATCAGTAAGAATATAGCGGCTTTG > 1:6011958/1‑35 CACCGACGCTATCAGTAAGAATATAGCGGCTTTGc > 1:4012275/1‑34 CACCGACGCTATCAGTAAGAATATAGCGGCTTTGc > 1:17069270/1‑34 CCGACGCTATCAGTAAGAATATAGCGGCTTTGGcg > 1:16386803/1‑33 CCGACGCTATCAGTAAGAATATAGCGGCTTTGGTG > 1:13205036/1‑35 CGACGCTATCAGTAAGAATATAGCGGGTTTGGTGG > 1:19546542/1‑35 GACGCTATCAGTAAGAATATAGCGGCTTTGGTGGA > 1:7292516/1‑35 GACGCTATCAGTAAGAATATAGCGGCTTTGGTGGA > 1:4154382/1‑35 GACGCTATCAGTAAGAATATAGCGGCTTTGCTGGA > 1:11087364/1‑35 GACGCTATCAGTAAGAATATAGCGGCTTTGCTGGA > 1:10624947/1‑35 ACGCTATCAGTAAGAATATAGCGGCTTTGGTTGAG > 1:15591315/1‑35 ACGCTATCAGTAAGAATATAGCGGCTTTGGTGGgg > 1:5330596/1‑33 CGCTATCAGTAAGAATATAGCGGCTTTGGTGGAGG > 1:4439199/1‑35 TATCAGTAAGAATATAGCGGCTTTGGTGGAGGggt > 1:2762670/1‑32 TATCAGTAAGAATATAGCGGCTTTGGTGGAGGggt > 1:4245181/1‑32 TATCAGTAAGAATATAGCGGCTTTGGTGGAGGggt > 1:12463862/1‑32 CGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTG < 1:13522904/35‑1 GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA > 1:8155023/1‑35 GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA < 1:20158730/35‑1 GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA > 1:16431774/1‑35 GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA < 1:8894876/35‑1 GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA > 1:13189775/1‑35 GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA < 1:9350687/35‑1 GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA < 1:9581157/35‑1 GCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGca > 1:17395955/1‑33 GCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAA > 1:19189763/1‑35 GCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAA > 1:12878662/1‑35 GCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAA > 1:951614/1‑35 CTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAC < 1:8679085/35‑1 CTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAC > 1:3182935/1‑35 CTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAC < 1:15381503/35‑1 CTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAC < 1:10494037/35‑1 TTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACA > 1:20406009/1‑35 TTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACA < 1:7367159/35‑1 TTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACA > 1:18797539/1‑35 TTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACA < 1:12931075/35‑1 TTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACA < 1:9891494/35‑1 TTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAA < 1:5924186/35‑1 TTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAA < 1:20340048/35‑1 TTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAA < 1:12039900/35‑1 TGCGGCAACACCGACGCTATCAGTAAGAATATAGCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2318803‑2318764 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcttTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAA > REL606/4219145‑4219178 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |