New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3686152 | 55 (0.540) | 7 (0.070) | 3/46 | NT | 10.7% | coding (410/741 nt) | yiaT | hypothetical protein |
? | REL606 | = 4031953 | 64 (0.650) | intergenic (+238/+174) | hemN/glnG | coproporphyrinogen III oxidase/fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
Only 100 of 258 total aligned reads displayed.
TGTGGAATACCGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTCCGCAGCCGC > REL606/3686126‑3686186 | gtgGAATACCGATAGCTCCCCCACCCAGCCGTTGa > 1:11269094‑M1/1‑34 (MQ=255) tgGAATACCGATAGCTCCCCCACCCAGCCGTGGcg > 1:5327962/1‑34 (MQ=255) ggAATACCGATAGCTCCCCCACCCAGCCGTTGCTg > 1:8289471/1‑35 (MQ=255) ggAATACCGATAGCTCCCCCACCCAGCCGTTGCTg > 1:2093826/1‑35 (MQ=255) aTACCGATAGCTCCCCCACCCAGCCGTTGCTGTTa > 1:11899864/1‑35 (MQ=255) tACCGATAGCTCCCCCACCCAGCCGTTGCTGTTAt > 1:10428884/1‑35 (MQ=255) ccGATAGCTCCCCCCCCCAGCCGTTGCTGTTATcc < 1:18022507/35‑1 (MQ=255) ccGATAGCTCCCCCCCCCAGCCGTTGCTGTTATcc < 1:13824536/35‑1 (MQ=255) ccGATAGCTCCCCCACCCAGCCGTTGCTGTTAtac > 1:15063573/1‑33 (MQ=255) cGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCa > 1:4681629/1‑35 (MQ=255) cGATAGCCCCCCCCCCCAGCCGTTGCTGTTATCCa < 1:7359730/35‑1 (MQ=25) gATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAg > 1:3044586/1‑35 (MQ=255) gATAGCCCCCCCCCCCAGCCGTTGCTGTTATCCAg < 1:10510423/35‑1 (MQ=25) aTAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGa > 1:1625294/1‑35 (MQ=255) tAGCTCCNCCACCCAGCCGTTGCTGTTATCCAGaa > 1:16801621/1‑35 (MQ=255) aGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAAc > 1:14723100/1‑35 (MQ=255) gcccccccCCCCAGCCGTTGCTGTTATCCAGAACg < 1:6891284/32‑1 (MQ=25) cTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGt > 1:6120009/1‑35 (MQ=255) tCCCCCCCCCAGCCGTTGCTGTTATCCAGAACGTc < 1:12063569/35‑1 (MQ=255) cccccccCCCAGCCGTTGCctgatgcgacgcgtaa > 1:20315824‑M2/2‑19 (MQ=255) cccccCCCCtgccgttgctgccgtgctgtgtgccg < 1:10378141‑M1/35‑27 (MQ=255) cccccCCCCAGCCGTTGtaggcctgataagacgcg < 1:1655315‑M1/35‑19 (MQ=255) cccccCCCCAGCCGTTGtaggcctgataagacgcg < 1:4446339‑M1/35‑19 (MQ=255) cccccCCCCAGCCGTTGCctgatgcgacgcgtaat > 1:15859047‑M2/1‑18 (MQ=255) cccccCCCCAGCCGTTGCctgatgcgacgcgtaat > 1:2536266‑M2/1‑18 (MQ=255) cccccCCCCAGCCGTTGCctgatgcgacgcgtaat > 1:1003579‑M2/1‑18 (MQ=255) ccccCCCCAGCCGTTGgcgatccggttcggccacg < 1:4292959‑M1/35‑20 (MQ=255) ccccCCCCAGCCGTTGgcgatccggttcggccacg < 1:12422903‑M1/35‑20 (MQ=255) ccccCCCCAGCCGTTGgcgatccggttcggccacg < 1:8331632‑M1/35‑20 (MQ=255) ccccCCCCAGCCGTTGCctgatgcgacgctgtgcg > 1:2762524‑M2/1‑17 (MQ=255) ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg > 1:18881135‑M2/1‑17 (MQ=255) ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg > 1:17035659‑M2/1‑17 (MQ=255) ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg > 1:12150379‑M2/1‑17 (MQ=255) ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg > 1:12611706‑M2/1‑17 (MQ=255) ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg > 1:1310974‑M2/1‑17 (MQ=255) ccccACCCAGCCGTTGCTGTTATCCAGAACGTccg > 1:12031214/1‑35 (MQ=255) ccccACCCAGCCGTTGCTGTTATCCAGAACGTccg > 1:15045961/1‑35 (MQ=255) ccccACCCAGCCGTTGCTGTTATCCAGAACGTccg > 1:18183785/1‑35 (MQ=255) cccccccaGCCGTTGgcgatccggttcggccacgg < 1:6308722‑M1/35‑21 (MQ=255) cccccccaGCCGTTGgcgatccggttcggccacgg < 1:15581129‑M1/35‑21 (MQ=255) cccccccaGCCGTTGCctgatgcgacgcgtaatgc > 1:7228551‑M2/1‑16 (MQ=255) cccccccaGCCGTTGCctgatgcgacgcgtaatgc > 1:18798418‑M2/1‑16 (MQ=255) cccccccaGCCGTTGCctgatgcgacgcgtaatgc > 1:4021739‑M2/1‑16 (MQ=255) cccccccaGCCGTTGCctgatgcgacgcgtaatgc > 1:10070073‑M2/1‑16 (MQ=255) cccccctgccgttgctgccgtgctgtgtgccgcaa < 1:806310‑M1/32‑30 (MQ=255) ccccccagccGTTGgcgatccggttcggccacgga < 1:14642477‑M1/32‑22 (MQ=255) ccccccaGCCGTTGCctgatgcgacgctgtgcgtc > 1:6622346‑M2/1‑15 (MQ=255) ccccccaGCCGTTGCctgatgcgacgcgtaatgcg > 1:11644750‑M2/1‑15 (MQ=255) ccgccagccGTTGCctgatgcgacgctgtgcgtct > 1:899040‑M2/4‑14 (MQ=255) ccgccagccGTTGCctgatgcgacgctgtgcgtct > 1:1522519‑M2/4‑14 (MQ=255) ccgccagccGTTGCctgatgcgacgcgtaatgcgt > 1:16385775‑M2/4‑14 (MQ=255) cccccagcCGTTGCctgatgcgacgctgtgcgtct > 1:5958548‑M2/3‑14 (MQ=255) cccccagcCGTTGCctgatgcgacgctgtgcgtct > 1:6032294‑M2/3‑14 (MQ=255) cccccagcCGTTGCctgatgcgacgctgtgcgtct > 1:7458274‑M2/3‑14 (MQ=255) cccccagcCGTTGCctgatgcgacgcgtaatgcgt > 1:1776677‑M2/3‑14 (MQ=255) cccccagcCGTTGCctgatgcgacgcgtaatgcgt > 1:10314786‑M2/3‑14 (MQ=255) cccccagcCGTTGCctgatgcgacgcgtaatgcgt > 1:6955427‑M2/3‑14 (MQ=255) cacccaGCCGTTGCTGTTATCCAGAACGGccgccg > 1:18277765/1‑33 (MQ=25) cgccagcCGTTGCctgatgcgacgctgtgcgtctt > 1:19234890‑M2/3‑13 (MQ=255) ccccagCCGTTGtaggcctgataagacgcgcaagc < 1:7568299‑M1/34‑24 (MQ=255) ccccagCCGTTGgcgatccggttcggccacggaat < 1:17449316‑M1/34‑24 (MQ=255) ccccagCCGTTGgcgatccggttcggccacggaat < 1:15350068‑M1/34‑24 (MQ=255) ccccagCCGTTGgagatccggttcggccacggaat < 1:20506821‑M1/34‑24 (MQ=255) ccccagCCGTTGCctgatgcgacgcgtaatgcgtc > 1:6784030‑M2/2‑13 (MQ=255) ccccagCCGTTGCctgatgcgacgcgtaatgcgtc > 1:14208247‑M2/2‑13 (MQ=255) ccccagCCGTTGCctgatgcgacgcgtaatgcgtc > 1:3352112‑M2/2‑13 (MQ=255) ccccagCCGTTGCctgatgcgacgcgtaatgcgtc > 1:18925396‑M2/2‑13 (MQ=255) ccccagCCGTTGCctgatgcgacgcgtaatgcgtc > 1:14330618‑M2/2‑13 (MQ=255) ccccagCCGTTGCctgatgcgacgcgtaatgcgtc > 1:16024353‑M2/2‑13 (MQ=255) ccccagCCGTTGCctgatgcgacgcgtaatgcgtc > 1:575924‑M2/2‑13 (MQ=255) ccccagCCGTTGCctgatgcgacgcgtaatgcgtc > 1:9327112‑M2/2‑13 (MQ=255) acccaGCCGTTGCTGTTATCCAGAACGTccgcagc > 1:17924398/1‑35 (MQ=255) acccaGCCGCTGCTGTTATCCAGAACGTccgcagc > 1:1292172/1‑35 (MQ=255) cccaGCCGTTGtaggcctgataagacgcgcaagcg < 1:9803264‑M1/35‑25 (MQ=255) cccaGCCGTTGtaggcctgataagacgcgcaagcg < 1:9533212‑M1/35‑25 (MQ=255) cccaGCCGTTGCctgatgcgacgctgtgcgtctta > 1:3940467‑M2/1‑12 (MQ=255) cccaGCCGTTGCctgatgcgacgcgtaatgcgtct > 1:16673115‑M2/1‑12 (MQ=255) cccaGCCGTTGCctgatgcgacgcgtaatgcgtct > 1:2648281‑M2/1‑12 (MQ=255) cccaGCCGTTGCctgatgcgacgcgtaatgcgtct > 1:4901450‑M2/1‑12 (MQ=255) ccaGCCGTTGtaggcctgataagacgcgcaagcgt < 1:783597‑M1/35‑26 (MQ=255) ccaGCCGTTGgcgatccggttcggccacggaataa < 1:19083427‑M1/35‑26 (MQ=255) ccaGCCGTTGgcgatccggttcggccacggaataa < 1:7333455‑M1/35‑26 (MQ=255) ccaGCCGTTGCctgatgcgacgctgtgcgtcttat > 1:19661338‑M2/1‑11 (MQ=255) ccaGCCGTTGCctgatgcgacgctgtgcgtcttat > 1:2405370‑M2/1‑11 (MQ=255) ccaGCCGTTGCctgatgcgacgcgtaatgcgtctt > 1:5565549‑M2/1‑11 (MQ=255) ccaGCCGTTGCctgatgcgacgcgtaatgcgtctt > 1:17345753‑M2/1‑11 (MQ=255) ccaGCCGTTGCctgatgcgacgcgtaatgcgtctt > 1:3450832‑M2/1‑11 (MQ=255) ctgccgttgctgccgtgctgtgtgccgcaatgatt < 1:10761643‑M1/35‑35 (MQ=255) caGCCGTTGtaggcctgataagacgcgcaagcgtc < 1:3316719‑M1/35‑27 (MQ=255) caGCCGTTGtaggcctgataagacgcgcaagcgtc < 1:4545082‑M1/35‑27 (MQ=255) caGCCGTTGgcgatccggttcggccacggaataag > 1:4800662‑M1/1‑9 (MQ=255) caGCCGTTGgcgatccggttcggccacggaataag > 1:13455727‑M1/1‑9 (MQ=255) caGCCGTTGgcgatccggttcggccacagaataag > 1:19968796‑M1/1‑9 (MQ=255) caGCCGTTGCctgatgcgacgctgtgcgtcttatc > 1:14450493‑M2/1‑10 (MQ=255) caGCCGTTGCctgatgcgacgctgtgcgtcttatc > 1:349446‑M2/1‑10 (MQ=255) caGCCGTTGCctgatgcgacgcgtaatgcgtctta < 1:13702453‑M2/35‑26 (MQ=255) caGCCGTTGCctgatgcgacgcgtaatgcgtctta > 1:11391053‑M2/1‑10 (MQ=255) caGCCGTTGCctgatgcgacgcgtaatgcgtctta > 1:14115329‑M2/1‑10 (MQ=255) caGCCGTTGCctgatgcgacgcgtaatgcgtctta > 1:17485590‑M2/1‑10 (MQ=255) caGCCGTTGCctgatgcgacgcgtaatgcgtctta > 1:14861125‑M2/1‑10 (MQ=255) | TGTGGAATACCGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTCCGCAGCCGC > REL606/3686126‑3686186 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |