New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3579044 = | 7 (0.070) | 29 (0.320) | 6/42 | NT | 37.4% | intergenic (+703/‑174) | gor/arsR | glutathione reductase/DNA‑binding transcriptional repressor |
? | REL606 | 3912266 = | 91 (1.010) | intergenic (+46/‑94) | ilvL/ilvG | ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit |
Only 100 of 266 total aligned reads displayed.
TAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAG > REL606/3912232‑3912300 | tAACGAACTAAGACCCCCGCACCGAAAGGTCCtgg > 1:14894036/1‑35 (MQ=255) gcccggcgacgctattttatttgcatggaggcggg > 1:2885918‑M2/35‑35 (MQ=255) gaatcagggcgtaaaaaaaccgactttgcgtcggg > 1:18917529‑M2/35‑35 (MQ=255) gccgccgcctttgatcatttgcatgtggccggggg > 1:8562947‑M2/32‑35 (MQ=255) cccggcgacgctattttatttgcatggaggcgggg > 1:931771‑M2/34‑35 (MQ=255) aatcaggacgtaaaaaaaccgactttgcgtcgggg > 1:12905958‑M2/34‑35 (MQ=255) aatcaggacgtaaaaaaaccgactttgcgtcgggg > 1:11958133‑M2/34‑35 (MQ=255) ccggcgacgctattttatttgcatggaggcggggg > 1:8880892‑M2/33‑35 (MQ=255) ccggcgacgctattttatttgcatggaggcggggg > 1:5356382‑M2/33‑35 (MQ=255) ccggcgacgctattttatttgcatggaggcggggg > 1:3339176‑M2/33‑35 (MQ=255) aCGAACTAAGACCCCCGCACCGAAAGGTCCggggg > 1:11173361/1‑35 (MQ=255) tgactaaaaaccgacgtttcatcagcgtcggGGGt > 1:1279604‑M2/32‑35 (MQ=255) cggcgacgctattttatttgcattgaggcgggggg > 1:20558347‑M2/32‑34 (MQ=255) cGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGt > 1:7969806/1‑35 (MQ=255) ggcgacgctattttatttgcatggaggcggggggt > 1:1296295‑M2/31‑33 (MQ=255) gccgcctttgatcatttgcatgtggccgGGGGGtt > 1:2110337‑M2/29‑35 (MQ=255) gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt > 1:13375709/1‑35 (MQ=255) gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt > 1:1817537/1‑35 (MQ=255) gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt > 1:17966694/1‑35 (MQ=255) gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt < 1:309469/35‑1 (MQ=255) caggacgtaaaaaaaccgactttgcgtcggGGGtt > 1:10228574‑M2/31‑35 (MQ=255) caggacgtaaaaaaaccgactttgcgtcggGGGtt > 1:10391893‑M2/31‑35 (MQ=255) caggacgtaaaaaaaccgactttgcgtcggGGGtt > 1:22503‑M2/31‑35 (MQ=255) ccgcctttgatcatttgcatgtggccgGGGGTttt > 1:10840791‑M2/28‑35 (MQ=255) ccgcctttgatcatttgcatgtggccgGGGGGttt > 1:15463851‑M2/28‑35 (MQ=255) actaaaaaccgacgtttcatcagcgtcggGGGgtt > 1:20276429‑M2/30‑35 (MQ=255) actaaaaaccgacgtttcatcagcgtcggGGGgtt > 1:9056801‑M2/30‑35 (MQ=255) ctaaaaaccgacgtttcatcagcgtcggGGGtttt > 1:10625995‑M2/29‑35 (MQ=255) cgcctttgatcatttgcatgtggccgGGGGTtttt > 1:19485750‑M2/27‑35 (MQ=255) cgacgctattttatttgcatggaggcgggggtgtg > 1:17353970‑M2/29‑32 (MQ=255) taaaaaccgacgtttcatcagcgtcggGGGgtttt > 1:5798182‑M2/28‑35 (MQ=255) gatgtaaaaaaaccgactttgcgtcggGGGttttt > 1:13668181‑M2/28‑35 (MQ=255) gacgtaaaaaaaccgactttgcgtcggGGGttttt > 1:3349282‑M2/28‑35 (MQ=255) cTAAGCCCCCCGCACCGAAAGGTCCGGGGGttttt < 1:7397516/35‑1 (MQ=255) cTAAGACCCCCGCACCGAAAGGTCCGGGGGttttt > 1:1071620/1‑35 (MQ=255) tAAGACCCCCGCACCGAAAGGTCCGGGGGtttttt < 1:15941843/35‑1 (MQ=255) cctttgatcatttgcatgtggccgGGGGTtttttt > 1:1835831‑M2/25‑35 (MQ=255) cctttgatcatttgcatgtggccgGGGGTtttttt > 1:19823674‑M2/25‑35 (MQ=255) acgtaaaaaaaccgactttgcgtcggGGTtttttt > 1:19103346‑M2/27‑35 (MQ=255) acgtaaaaaaaccgactttgcgtcggGGGtttctt > 1:20364417‑M2/27‑35 (MQ=255) tgtaaaaaaaccgactttgcgtcggGGTttttttt > 1:5616394‑M2/26‑35 (MQ=255) tgtaaaaaaaccgactttgcgtcggGGTttttttt > 1:17608776‑M2/26‑35 (MQ=255) ctttgatcatttgcatgtggccgGGGGTttttttt > 1:14992251‑M2/24‑35 (MQ=255) aaaaccgacgtttcatcagcgtcggGGGttttttt > 1:15893402‑M2/26‑35 (MQ=255) aaGACCCCCGCACCGAAAGGTCCGGGGGttttttt > 1:4548261/1‑35 (MQ=255) aaGACCCCCGCACCGAAAGGTCCGGGGGttttttt > 1:568918/1‑35 (MQ=255) gctattttatttgcatggaggcggGGgtgtttttg > 1:19236493‑M2/25‑34 (MQ=255) gctattttatttgcatggaggcggGGggttttttg > 1:12690822‑M2/25‑34 (MQ=255) gctattttatttgcatggaggcggGGGtttttttt > 1:5547638‑M2/25‑35 (MQ=255) aGACCCCCGCACCGAAAGGTCCGGTGGgttttttt > 1:16168339/1‑35 (MQ=38) aGACACCCGCACCGAAAGGTCCGGGGGtttttttt < 1:8191855/35‑1 (MQ=255) ttgatcatttgcatgtggccgGGGGtttttttttc > 1:10125736‑M2/22‑34 (MQ=255) taaaaaaaccgactttgcgtcggGGgttttttttt > 1:2517252‑M2/24‑34 (MQ=255) ctattttatttgcatggaggcggGGggtttttttt > 1:17139773‑M2/24‑34 (MQ=255) ctattttatttgcatggaggcggGGGTTTTTTTTg > 1:2375831‑M2/24‑35 (MQ=255) aaccgacgtttcatcagcgtcggGGggtttttttt > 1:5180529‑M2/24‑34 (MQ=255) accgacgtttcatcagcgtcggGggtttttttttt > 1:16882405‑M2/23‑33 (MQ=255) aCCCCCGCACCGAAAGGTCCGGGGATTTTTTTTGa < 1:16287795/35‑1 (MQ=255) aaaaaaccgactttgcgtcgggggttttttttttc > 1:10458309‑M2/22‑32 (MQ=255) ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc < 1:14033188/35‑1 (MQ=255) ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc < 1:17096205/35‑1 (MQ=255) cccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt > 1:13926161/1‑35 (MQ=255) cccGCACCGAAAGGTCCGGGGGGTTTTTTTGACCt > 1:8384999/1‑35 (MQ=255) ccGCACCGAAAGGTCCTGGGGTTTTTTTTGACCtt > 1:17548972/1‑35 (MQ=255) ccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCtt < 1:4118406/35‑1 (MQ=255) cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa > 1:9539844/1‑35 (MQ=255) gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa > 1:623809/1‑35 (MQ=255) gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa < 1:9690737/35‑1 (MQ=255) gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa > 1:15106899/1‑35 (MQ=255) cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa < 1:8950619/35‑1 (MQ=255) cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa < 1:6036952/35‑1 (MQ=255) aCCGAAGGGTCCGGGGGTTTTTTTTGACCTTaaaa < 1:2723720/35‑1 (MQ=255) ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa > 1:12456006/1‑35 (MQ=255) ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa < 1:3752852/35‑1 (MQ=255) cGAAAGATCCGGGGGTTTTTTTTGACCTTAAAAAc < 1:13191552/35‑1 (MQ=255) gAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa < 1:9229929/35‑1 (MQ=255) gAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa > 1:4270236/1‑35 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt > 1:11276752/1‑35 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt > 1:6873303/1‑35 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt < 1:17659548/35‑1 (MQ=255) aaaCGTCCGGGGG‑TTTTTTTGACCTTAAAAACATa < 1:4972444/35‑1 (MQ=25) aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa < 1:6615051/35‑1 (MQ=255) aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa < 1:6948494/35‑1 (MQ=255) aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa < 1:4685106/35‑1 (MQ=255) aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa < 1:13019874/35‑1 (MQ=255) aGGTCCGGGGGTTTTTTTTTACCTTAAAAACATaa > 1:11814265/1‑35 (MQ=255) aGGTCCGGGGGTTTTTTTTGACCTTAAAAACATaa > 1:4016292/1‑35 (MQ=255) aGGTCCGGGGGTTTTTTTTGACATTAAAAACATaa < 1:18593979/35‑1 (MQ=255) ggTCCGGGGGTTTTTTTTGACCTTAAAAACATAAc > 1:15371700/1‑35 (MQ=255) gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc > 1:15620853/1‑35 (MQ=255) gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc < 1:16635497/35‑1 (MQ=255) gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc < 1:13521831/35‑1 (MQ=255) tCCGGGGGTTTTTTTTGACCTTAAAAACATAACCg < 1:12152004/35‑1 (MQ=255) tCCGGGGGTTTTTTTTGACCTTAAAAACATAACCg > 1:3205100/1‑35 (MQ=255) cggGGGTTTTTTTTGACCTTAAAAACATAACCgag < 1:7688306‑M2/32‑1 (MQ=255) ggGGCTTTTTTTTGACCTTAAAAACATAACCgagg > 1:13115441‑M2/3‑35 (MQ=255) gggTTTTTTTTGACCTTAAAAACATAACCgaggag > 1:1189815/1‑35 (MQ=255) gggTTTTTTTTGACCTTAAAAACATAACCgaggag > 1:14206202/1‑35 (MQ=255) gggTTTTTTTTGACCTTAAAAACATAACCgaggag > 1:14696196/1‑35 (MQ=255) gggTTTTTTTTGACCTTAAAAACATAACCgagcag < 1:11013035/35‑1 (MQ=255) | TAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAG > REL606/3912232‑3912300 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |