New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3182813 =111 (1.080)7 (0.110) 3/30 NT 10.7% coding (97/405 nt) yqjE conserved inner membrane protein
?REL606 4217451 = 48 (0.750)coding (886/2097 nt) yjbH predicted porin

GATTAGCTTTTTCCTCTTCCAGCTCAACCACCGCCAGCCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3182855‑3182813
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccgcagGATGCCATTTTGCAGCATTCGGTGGTGGCGAATC  >  REL606/4217451‑4217484
                                                                             
GATTAGCTTTTTCCTCTTCCAGCTCAACCACCGCC                                            >  1:2236562/1‑35
GATTAGCTTTTTCCTCTTCCAGCTCAACCACCGCC                                            >  1:14545320/1‑35
GATTAGCTTTTTCCTCTTCCAGCTCAACCACCGCC                                            >  1:7119030/1‑35
GATTAGCTTTTCCCTCTTCCAGCTCAACCACCGCC                                            >  1:20017082/1‑35
 ATTAGCTTTTTCCTCTTCCAGCTCAACCACCGCCA                                           >  1:362108/1‑35
 ATTAGCTTTTTCCTCTTCCAGCTCAACCACCGCCA                                           >  1:5604179/1‑35
  TTAGCTTTTTCCTCTTCCAGCTCAACCACCGCCAG                                          >  1:3150588/1‑35
  TTAGCTTTTTCCTCTTCCAGCTCAACCACCGCCAG                                          >  1:11642786/1‑35
  TTAGCTTTTTCCTCTTCCAGCTCAACCACCGCCAG                                          >  1:12337473/1‑35
   TAGCTTTTTCCTCTTCCAGCTCAACCACCGCCAGC                                         >  1:20202219/1‑35
   TAGCTTTTTCCTCTTCCAGCTCAACCACCGCCAGC                                         >  1:20041979/1‑35
   TAGCTTTTTCCTCTTCCAGCTCAACCACCGCCAGC                                         >  1:4646566/1‑35
   TAGCTTTTTCCTCTTCCAGCTCAACCACCGCCAGC                                         >  1:12370186/1‑35
   TAGCTTTTTCCTCTTCCAGCTCAACCACCGCCAGC                                         >  1:13926113/1‑35
    AGCTTTTTCCTCTTCCAGCTCAACCACCGCCAGCC                                        >  1:4584669/1‑35
     GCTTTTTCCTCTTCCAGCTCAACCACCGCCAGCCG                                       >  1:6281375/1‑35
     GCTTTTTCCTCTTCCAGCTCAACCACCGCCAGCCG                                       >  1:892523/1‑35
      CTTTTTCCTCTTCCAGCTCAACCACCGCCAGCCGC                                      >  1:13735515/1‑35
      CTTTTTCCTCTTCCAGCTCAACCACCGCCAGCCGC                                      >  1:11489207/1‑35
      CTTTTTCCTCTTCCAGCTCAACCACCGCCAGCCGC                                      >  1:15927377/1‑35
       TTTTTCCTCTTCCAGCTCAACCACCGCCAGCCGCg                                     >  1:5234219/1‑34
       TTTTTCCTCTTCCAGCTCAACCACCGCCAGCCGCA                                     >  1:14389773/1‑35
       TTTTTCCTCTTCCAGCTCAACCACCGCCAGCCGCA                                     >  1:12041130/1‑35
       TTTTTCCTCTTCCAGCTCAACCACCGCCAGCCGCA                                     >  1:1205091/1‑35
        TTTTCCTCTTCCAGCTCAACCACCGCCAGCCGCAG                                    >  1:7626004/1‑35
        TTTTCCTCTTCCAGCTCAACCACCGCCAGCCGCAG                                    >  1:11348455/1‑35
        TTTTCCTCTTCCAGCTCAACCACCGCCAGCCGCAG                                    >  1:15521155/1‑35
                          ACCACCCCCAGCCGCAGGATGCCATTTTGCAGCAT                  <  1:7869168/35‑1
                          ACCACCCCCAGCCGCAGGATGCCATTTTGCAGCAT                  <  1:15620863/35‑1
                           CCACCCCCAGCCGCAGGATGCCATTTTGCAGCATT                 <  1:10915846/35‑1
                           CCACCCCCAGCCGCAGGATGCCATTTTGCAGCATT                 <  1:15772595/35‑1
                           CCACCCCCAGCCGCAGGATGCCATTTTGCAGCATT                 <  1:6813745/35‑1
                            ccgCGCCAGCCGCAGGATGCCATTTTGCAGCATTC                <  1:9484261/32‑1
                            CACCCCCAGCCGCAGGATGCCATTTTGCAGCATTC                <  1:17463502/35‑1
                            CACCCCCAGCCGCAGGATGCCATTTTGCAGCATTC                <  1:14111346/35‑1
                              cccCCAGCCGCAGGATGCCATTTTGCAGCATTCGG              <  1:12304022/32‑1
                               ccCCAGCCGCAGGATGCCATTTTGCAGCATTCGGT             <  1:16929797/33‑1
                               ccCCAGCCGCAGGATGCCATTTTGCAGCATTCGGT             <  1:8258401/33‑1
                                cCCAGCCGCAGGATGCCATTTTGCAGCATTCGGTG            <  1:15624186/34‑1
                                cCCAGCCGCAGGATGCCATTTTGCAGCATTCGGTG            <  1:14814415/34‑1
                                 CCAGCCGCAGGATGCCATTTTGCAGCATTCGGTGG           <  1:9519770/35‑1
                                  CAGCCGCAGGATGCCATTTTGCAGCATTCGGTGGg          >  1:4289825/1‑34
                                  CAGCCGCAGGATGCCATTTTGCAGCATTCGGTGGT          <  1:10772918/35‑1
                                  CAGCCGCAGGATGCCATTTTGCAGCATTCGGTGGT          >  1:8966212/1‑35
                                  CAGCCGCAGGATGCCATTTTGCAGCATTCGGTGGT          >  1:12974149/1‑35
                                  CAGCCGCAGGATGCCATTTTGCAGCATTCGGTGGT          >  1:3905925/1‑35
                                   AGCCGCAGGATGCCATTTTGCAGCATTCGGTGGgg         >  1:8984967/1‑33
                                   AGCCGCAGGATGCCATTTTGCAGCATTCGGTGGgg         >  1:2106277/1‑33
                                   AGCCGCAGGATGCCATTTTGCAGCATTCGGTGGTG         <  1:14362088/35‑1
                                    GCCGCAGGATGCCATTTTGCAGCATTCGGTGGTGG        <  1:8767692/35‑1
                                     nCGCAGGATGCCATTTTGCAGCATTCGGTGGGGGC       >  1:11618529/2‑35
                                     CCGCAGGATGCCATTTTGCAGCATTGGGTGGTGGC       <  1:5762364/35‑1
                                     CCGCAGGATGCCATTTTGCAGCATTCGGTGGTGGC       <  1:20008728/35‑1
                                     CCGCAGGATGCCATTTTGCAGCATTCGGTGGTGGC       <  1:5423457/35‑1
                                     CCGCAGGATGCCATTTTGCAGCATTCGGTGGGGGC       >  1:12859723/1‑35
                                      CGCAGGATGCCATTTTGCAGCATTCGGTGGTGGCG      <  1:1709604/35‑1
                                      CGCAGGATGCCATTTTGCAGCATTCGGTGGTGGCG      <  1:12689657/35‑1
                                      CGCAGGATGCCATTTTGCAGCATTCGGTGGTGGCG      <  1:5356119/35‑1
                                      CGCAGGATGCCATTTTGCAGCATTCGGTGGTGGCG      >  1:7524933/1‑35
                                      CGCAGGATGCCATTTTGCAGCATTCGGTGGTGGCG      <  1:7351796/35‑1
                                      CGCAGGATGCCATTTTGCAGCATTCGGTGGGGGCG      >  1:5110685/1‑35
                                       GCAGGATGCCATTTTGCAGCATTCGGTGGTGGCGA     <  1:14177963/35‑1
                                       GCAGGATGCCATTTTGCAGCATTCGGTGGTGGCGA     <  1:15931137/35‑1
                                        CAGGATGCCATTTTGCAGCATTCGTTGGTGGCGAA    >  1:8051516/1‑35
                                        CAGGATGCCATTTTGCAGCATTCGGTGGTGGCGAA    <  1:13978718/35‑1
                                        CAGGATGCCATTTTGCAGCATTCGGTGGTGGCGAA    <  1:3646744/35‑1
                                         AGGATGCCATTTTGCAGCATTCGGTGGTGGGGAAT   >  1:6138134/1‑35
                                         AGGATGCCATTTTGCAGCATTCGGTGGTGGCGAtt   <  1:20273890/35‑3
                                         AGGATGCCATTTTGCAGCATTCGGTGGTGGCGAAT   <  1:14281202/35‑1
                                         AGGATGCCATTTTGCAGCATTCGGTGGTGGCGAAT   <  1:12827251/35‑1
                                         AGGATGCCATTTTGCAGCATTCGGTGGTGGCGAAT   <  1:19647158/35‑1
                                          GGATGCCATTTTGCAGCATTCGGTGGTGGCGAAac  >  1:4966879/1‑33
                                          GGATGCCATTTTGCAGCATTCGGTGGTGGCGAATC  <  1:3415044/35‑1
                                          GGATGCCATTTTGCAGCATTCGGTGGTGGCGAATC  <  1:16789438/35‑1
                                                                             
GATTAGCTTTTTCCTCTTCCAGCTCAACCACCGCCAGCCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3182855‑3182813
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccgcagGATGCCATTTTGCAGCATTCGGTGGTGGCGAATC  >  REL606/4217451‑4217484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.