New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 114196 =59 (0.570)12 (0.130) 3/42 NT 17.6% coding (349/390 nt) mutT nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP
?REL606 422596 = 61 (0.680)intergenic (‑283/+179) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter

Only 100 of 134 total aligned reads displayed.

GTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACG  >  REL606/114162‑114230
                                  |                                  
gTCGCTGGTCGGTCTTAATGCCGATGATTTTCCgc                                    >  1:16367409/1‑35 (MQ=255)
gTCGCTGGTCGGTCTTAATGCCGATGATTTTCCgc                                    <  1:19565478/35‑1 (MQ=255)
  cGCTGGTCGGTCTTAATGCCGATGATTTTCCgcca                                  <  1:3632205/35‑1 (MQ=255)
  cGCTGGTCGGTCTTAATGCCGATGATTTTCCgcca                                  >  1:17743279/1‑35 (MQ=255)
  cGCTGGTCGGTCTTAATGCCGATGATTTTCCgcca                                  <  1:18419600/35‑1 (MQ=255)
  cGCTGGTCGGTCTTAATGCCGATGATTTTCCgcca                                  <  1:17303019/35‑1 (MQ=255)
  cGCTGGTCGGTCTTAATGCCGATGATTTTCCgcca                                  >  1:10986263/1‑35 (MQ=255)
  cGCTGGTCGGTCTTAATGCCGATGATTTTCCgcca                                  >  1:15274348/1‑35 (MQ=255)
   gCTGGTCTGTCTTAATGCCGATGATTTTCCgccag                                 >  1:13424896/1‑35 (MQ=255)
   gCTGGTCGGTCTTAATGCCGATGATTTTCCgccag                                 >  1:20467254/1‑35 (MQ=255)
   gCTGGTCGGTCTTAATGCCGATGATTTTCCgccag                                 <  1:15000491/35‑1 (MQ=255)
   gCTGGTCGGTCTTAATGCCGATGATTTTCCgccag                                 >  1:7037332/1‑35 (MQ=255)
   gCTGGTCGGTCTTAATGCCGATGATTTTCCgccag                                 >  1:18476828/1‑35 (MQ=255)
   gCTGGTCGGTCTTAATGCCGATGATTTTCCgccag                                 >  1:18024115/1‑35 (MQ=255)
    cTGGTCTGTCTTAATGCCGATGATTTTCCgccagc                                >  1:293672/1‑35 (MQ=255)
    cTGGTCGGTCTTAATGCCGATGATTTTCCgccagc                                >  1:19533912/1‑35 (MQ=255)
    cTGGTCGGTCTTAATGCCGATGATTTTCCgccagc                                >  1:15723621/1‑35 (MQ=255)
    cTGGTCGGTCTTAATGCCGATGATTTTCCgccagc                                >  1:25938/1‑35 (MQ=255)
    cTGGTCGGTCTTAATGCCGATGATTTTCCgccagc                                >  1:3749191/1‑35 (MQ=255)
    cTGGTCGGTCTTAATGCCGATGATTTTCCgccagc                                <  1:4305471/35‑1 (MQ=255)
    cTGGTCGGTCTTAATGCCGATGATTTTCCgccagc                                >  1:5832248/1‑35 (MQ=255)
    cTGGTCGGTCTTAATGCCGATGATTTTCCgccagc                                >  1:6478651/1‑35 (MQ=255)
    cTGGTCGGTCTTAATGCCGATGATTTTCCgccagc                                >  1:10315943/1‑35 (MQ=255)
    cTGGTCGGTCTTAATGCCGATGATTTTCCgccagc                                <  1:698111/35‑1 (MQ=255)
     tGGTCGGTCTTAATGCCGATGATTTTCCgccagcc                               >  1:5069810/1‑35 (MQ=255)
     tGGTCGGTCTTAATGCCGATGATTTTCCgccagcc                               >  1:7790737/1‑35 (MQ=255)
     tGGTCGGTCTTAATGCCGATGATTTTCCgccagcc                               >  1:12151680/1‑35 (MQ=255)
     tGGTCGGTCTTAATGCCGATGATTTTCCgccagcc                               >  1:16376488/1‑35 (MQ=255)
      ggtcggtcTTAATGCCGATGATTTTCCgccagcca                              >  1:11752851/1‑35 (MQ=255)
       gtcggtcTTAATGCCGATGATTTTCCGCCAGCCaa                             >  1:1387219/1‑35 (MQ=255)
        tcggtcTTAATGCCGATGATTTTCCGCCAGCCAAt                            >  1:18998536/1‑35 (MQ=255)
         cggtcTTAATGCCGATGATTTTCCGCCAGCCAATg                           >  1:10464964/1‑35 (MQ=255)
          ggtcTTAATGCCGATGATTTTCCGCCAGCCAATGa                          >  1:14435063/1‑35 (MQ=255)
          ggtcTTAATGCCGATGATTTTCCGCCAGCCAATGa                          >  1:13748904/1‑35 (MQ=255)
          ggtcTTAATGCCGATGATTTTCCGCCAGCCAATGa                          >  1:15642096/1‑35 (MQ=255)
           gtcTTAATGCCGATGATTTTCCGCCAGCCAATGaa                         >  1:7554512/1‑35 (MQ=255)
           gtcTTAATGCCGATGATTTTCCGCCAGCCAATGaa                         >  1:15226711/1‑35 (MQ=255)
           gtcTTAATGCCGATGATTTTCCGCCAGCCAATGaa                         >  1:18383952/1‑35 (MQ=255)
            tcTTAATGCCGATGATTTTCCGCCAGCCAATGAAc                        >  1:19268992/1‑35 (MQ=255)
             cTTAATGCCGATGATTTTCCGCCAGCCANTGAAcn                       >  1:11557217/1‑35 (MQ=255)
             cTTAATGCCGATGATTTTCCGCCAGCCAATGAAcc                       >  1:7960574/1‑35 (MQ=255)
             cTTAATGCCGATGATTTTCCGCCAGCCAATGAAcc                       >  1:11242143/1‑35 (MQ=255)
             cTTAATGCCGATGATTTTCCGCCAGCCAATGAAcc                       >  1:15008276/1‑35 (MQ=255)
               tAATGCCGATGATTTTCCGCCAGCCAATGAACCgg                     >  1:11720188/1‑35 (MQ=255)
               tAATGCCGATGATTTTCCGCCAGCCAATGAACCgg                     >  1:5422526/1‑35 (MQ=255)
               tAATGCCGATGATTTTCCGCCAGCCAATGAACCgg                     >  1:485393/1‑35 (MQ=255)
                aaTGCCGATGATTTTCCGCCAGCCAATGAACCGGt                    >  1:10008698/1‑35 (MQ=255)
                 aTGCCGATGATTTTCCGCCAGCCAATGAACCGGTa                   >  1:5484326/1‑35 (MQ=255)
                 aTGCCGATGATTTTCCGCCAGCCAATGAACCGGTa                   >  1:7476779/1‑35 (MQ=255)
                  tGCCGATGATTTTCCGCCAGCCAATGAACCGGTaa                  >  1:18577720/1‑35 (MQ=255)
                  tGCCGATGATTTTCCGCCAGCCAATGAACCGGTaa                  >  1:11963631/1‑35 (MQ=255)
                    ccGATGATTTTCCGCCAGCCAATGAACCGGTAAtt                >  1:3579017/1‑35 (MQ=255)
                     cGATGATTTTCCGCCAGCCAATGAACCGGTAATTg               >  1:3183003/1‑35 (MQ=255)
                     cGATGATTTTCCGCCAGCCAATGAACCGGTAATTg               >  1:19062548/1‑35 (MQ=255)
                      gatgatTTTCCGCCAGCCAATGAACCGGTAATTGc              >  1:17435278/1‑35 (MQ=255)
                      gatgatTTTCCGCCAGCCAATGAACCGGTAATTGc              >  1:1927640/1‑35 (MQ=255)
                       ttttttcccccCCAGCCAATGAACCGGTAATTGCg             >  1:14204363‑M1/12‑35 (MQ=255)
                       ttttttcccccCCAGCCAATGAACCGGTAATTGCg             >  1:19085543‑M1/12‑35 (MQ=255)
                       ttgtttcccccCCAGCCAATGAACCGGTAATTGCg             >  1:13940800‑M1/12‑35 (MQ=255)
                       atgttTTCCCCCCAGCCAATGAACCGGTAATTGCg             <  1:7036834/35‑1 (MQ=25)
                       atgatTTTCCGCCAGCCAATGAACCGGTAATTGCg             >  1:13519913/1‑35 (MQ=255)
                        ttttccccccCCAGCCAATGAACCGGTAATTGCGa            >  1:789941‑M1/11‑35 (MQ=255)
                        tgatTTTCCGCCAGCCAATGAACCGGTAATTGCGa            >  1:638735/1‑35 (MQ=255)
                        tgatTTTCCGCCAGCCAATGAACCGGTAATTGCGa            >  1:12713502/1‑35 (MQ=255)
                        tgatTTTCCGCCAGCCAATGAACCGGTAATTGCGa            >  1:4361043/1‑35 (MQ=255)
                         ttttcccccCCAGCCAATGAACCGGTAATTGCGaa           >  1:15502604‑M1/10‑35 (MQ=255)
                         ggttttCCGCCAGCCAATGAACCGGTAATTGCGaa           >  1:14928444/3‑35 (MQ=255)
                         gatTTTCCGCCAGCCAATGAACCGGTAATTGCGaa           >  1:19627507/1‑35 (MQ=255)
                         gatTTCCCCCCAGCCAATGAACCGGTAATTGCGaa           <  1:10711813/35‑1 (MQ=37)
                          tttcccccCCAGCCAATGAACCGGTAATTGCGAAg          >  1:7647681‑M1/9‑35 (MQ=255)
                          atTTTCCGCCAGCCAATGAACCGGTAATTGCGAAg          >  1:2682569/1‑35 (MQ=255)
                          atTTTCCGCCAGCCAATGAACCGGTAATTGCGAAg          >  1:20586971/1‑35 (MQ=255)
                           ttttCCGCCAGCCAATGAACCGGTAATTGCGAAGc         >  1:4515678/1‑35 (MQ=255)
                           ttttCCGCCAGCCAATGAACCGGTAATTGCGAAGc         >  1:13583319/1‑35 (MQ=255)
                           tccccccCCAGCCAATGAACCGGTAATTGCGAAGc         >  1:474097‑M1/8‑35 (MQ=255)
                            tcccccCCAGCCAATGAACCGGTAATTGCGAAGCt        >  1:4318077‑M1/7‑35 (MQ=255)
                            tcccccCCAGCCAATGAACCGGTAATTGCGAAGCt        >  1:14761675‑M1/7‑35 (MQ=255)
                            tcccccCCAGCCAATGAACCGGTAATTGCGAAGCt        >  1:17475719‑M1/7‑35 (MQ=255)
                            ccccccCCAGCCAATGAACCGGTAATTGCGAAGCt        >  1:17874671‑M1/7‑35 (MQ=255)
                             ttCCGCCAGCCAATGAACCGGTAATTGCGAAGCtt       >  1:19325303/1‑35 (MQ=255)
                             ttCCGCCAGCCAATGAACCGGTAATTGCGAAGCtt       >  1:8392980/1‑35 (MQ=255)
                             cccccCCAGCCAATGAACCGGTAATTGCGAAGCtt       >  1:1462721‑M1/6‑35 (MQ=255)
                              tCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTa      >  1:18711037/1‑35 (MQ=255)
                               cccCCAGCCAATGAACCGGTAATTGCGAAGCTTaa     >  1:10255445‑M1/4‑35 (MQ=255)
                               cccCCAGCCAATGAACCGGTAATTGCGAAGCTTaa     >  1:14507673‑M1/4‑35 (MQ=255)
                               cccCCAGCCAATGAACCGGTAATTGCGAAGCTTaa     >  1:2000004‑M1/4‑35 (MQ=255)
                               cccCCAGCCAATGAACCGGTAATTGCGAAGCTTaa     >  1:18020683‑M1/4‑35 (MQ=255)
                                ccCCAGCCAATGAACCGGTAATTGCGAAGCTTaaa    >  1:15353846‑M1/3‑35 (MQ=255)
                                cGCCAGCCAATGAACCGGTAATTGCGAAGCTTaaa    >  1:6394564/1‑35 (MQ=255)
                                 cCCAGCCAATGAACCGGTAATTGCGAAGCTTAAAc   >  1:10067695‑M1/2‑35 (MQ=255)
                                 cCCAGCCAATGAACCGGTAATTGCGAAGCTTAAAc   >  1:17251706‑M1/2‑35 (MQ=255)
                                 cCCAGCCAATGAACAGGTAATTGCGAAGCTTAAAc   >  1:6066771‑M1/2‑35 (MQ=255)
                                  CCAGCCAATGAACCGGTAATTGCGACGCTTAAACg  <  1:1468958‑M1/35‑1 (MQ=255)
                                  CCAGCCAATGAACCGGTAATTGCGAAGCTTAAACg  <  1:4537648‑M1/35‑1 (MQ=255)
                                  CCAGCCAATGAACCGGTAATTGCGAAGCTTAAACg  >  1:317525‑M1/1‑35 (MQ=255)
                                  CCAGCCAATGAACCGGTAATTGCGAAGCTTAAACg  >  1:11708884‑M1/1‑35 (MQ=255)
                                  CCAGCCAATGAACCGGTAATTGCGAAGCTTAAACg  >  1:2796240‑M1/1‑35 (MQ=255)
                                  CCAGCCAATGAACCGGTAATTGCGAAGCTTAAACg  >  1:15977350‑M1/1‑35 (MQ=255)
                                  CCAGCCAATGAACCGGTAATTGCGAAGCTTAAACg  >  1:17349502‑M1/1‑35 (MQ=255)
                                  CCAGCCAATGAACCGGTAATTGCGAAGCTTAAACg  <  1:9337660‑M1/35‑1 (MQ=255)
                                  |                                  
GTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACG  >  REL606/114162‑114230

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.