New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2671676 =67 (0.650)9 (0.120) 3/36 NT 13.7% coding (328/594 nt) grpE heat shock protein
?REL606 4487631 = 63 (0.820)coding (453/1119 nt) yjhC predicted oxidoreductase

Only 100 of 145 total aligned reads displayed.

AAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGA  >  REL606/4487597‑4487665
                                  |                                  
attgatagcctggatcgtgcgctggaaggggctgg                                    >  1:10651731‑M2/35‑35 (MQ=255)
aaaTATTATCATGTCATACTAAGAGAAATGGCTgg                                    >  1:16460956/1‑35 (MQ=255)
aaaTATTATCATGTCATACTAAGAGAAATGGCTgg                                    <  1:19738883/35‑1 (MQ=255)
 ttgatagcctggatcgtgcgctggaaggggctggg                                   >  1:6040154‑M2/34‑35 (MQ=255)
 aaTATTATCATGTCATACTAAGAGAAATGGCTggg                                   <  1:18817486/35‑1 (MQ=255)
  atatTATCATGTCATACTAAGAGAAATGGCTgggg                                  >  1:5755367/1‑34 (MQ=255)
  atatTATCATGTCATACTAAGAGAAATGGCTgggg                                  >  1:13260823/1‑34 (MQ=255)
   tattatCATGTCATACTAAGAGAAATGGCTGGGaa                                 <  1:17983204/35‑1 (MQ=255)
   gatagcctggatcgtgcgctggaagtggctgggga                                 >  1:17651722‑M2/32‑33 (MQ=255)
    attatCATGTCATACTAAGAGAAATGGCTGGGgaa                                >  1:16789552/1‑35 (MQ=255)
    attatCATGTCATACTAAGAGAAATGGCTGGGgaa                                >  1:10068085/1‑35 (MQ=255)
    attatCATGTCATACTAAGAGAAATGGCTGGGgaa                                >  1:12282588/1‑35 (MQ=255)
    attatCATGTCATACTAAGAGAAATGGCTGGGaaa                                <  1:6794612/35‑1 (MQ=255)
     ttatCATGTCATACTAAGAGAAATGGCTGGGgaaa                               >  1:9090310/1‑35 (MQ=255)
     ttatCATGTCATACTAAGAGAAATGGCTGGGaaaa                               <  1:19421469/35‑1 (MQ=255)
     tagcctggatcgtgcgctggaagtggctgGGaaaa                               >  1:291729‑M2/30‑35 (MQ=255)
      tatCATGTCATACTAAGAGAAATGGCTGGGGaaac                              >  1:12757992/1‑35 (MQ=255)
      tatCATGTCACACTAAGAGAAATGGCTGGGAaaac                              <  1:9444381/35‑1 (MQ=255)
      agcctggatcgtgcgctggaagtggctgggaaaga                              >  1:6032038‑M2/29‑33 (MQ=255)
      agcctggatcgtgcgctggaagtggctgGggaaaa                              >  1:3222987‑M2/29‑34 (MQ=255)
      agcctggatcgtgcgctggaagtggctgGggaaaa                              >  1:402973‑M2/29‑34 (MQ=255)
      agcctggatcgtgcgctggaagtggctgGGAaaac                              >  1:4655392‑M2/29‑35 (MQ=255)
       gcctggatcgtgcgctggaagtggctgggaaaagc                             >  1:4092945‑M2/28‑33 (MQ=255)
       atCATGTCATACTAAGAGAAATGGCTGGGGaaaca                             >  1:7519975/1‑35 (MQ=255)
       atCATGTCATACTAAGAGAAATGGCTGGGAaaaca                             <  1:1574620/35‑1 (MQ=255)
       atCATGTCATACTAAGAGAAATGGCTGGGAaaaca                             <  1:9751056/35‑1 (MQ=255)
       atCATGTCATACTAAGAGAAATGGCTGGGAaaaca                             <  1:19786778/35‑1 (MQ=255)
       atCATGTCATACTAAGAGAAATGGCTGGGAaaaca                             <  1:12260068/35‑1 (MQ=255)
        tCATGTCATACTAAGAGAAATGGCTGGGAaaacaa                            <  1:7990462/35‑1 (MQ=255)
        tCATGTCATACTAAGAGAAATGGCTGGGAaaacaa                            <  1:7660469/35‑1 (MQ=255)
        tCATGTCATACTAAGAGAAATGGCTGGGAaaacaa                            >  1:360579/1‑35 (MQ=255)
        tCATGTCATACTAAGAGAAATGGCTGGGAaaacaa                            <  1:980889/35‑1 (MQ=255)
        cctggatcgtgcgctggaagtggctgggaaaaatc                            >  1:5657704‑M2/27‑32 (MQ=255)
        cctggatcgtgcgctggaagtggctgGGAaaagaa                            >  1:3129425‑M2/27‑35 (MQ=255)
         cATGTCATACTAAGAGAAATGGCTGGGGaaacaaa                           >  1:133751/1‑35 (MQ=255)
         cATGTCATACTAAGAGAAATGGCTGGGGaaacaaa                           >  1:16141398/1‑35 (MQ=255)
         cATGTCATACTAAGAGAAATGGCTGGGGaaacaaa                           >  1:13972443/1‑35 (MQ=255)
         cATGTCATACTAAGAGAAATGGCTGGGAaaacaaa                           <  1:16778643/35‑1 (MQ=255)
         cATGTCATACTAAGAGAAATGGCTGGGAaaacaaa                           <  1:15331458/35‑1 (MQ=255)
          aTGTCATACTAAGAGAAATGGCTGGGAaaacaaac                          <  1:12846910/35‑1 (MQ=255)
          aTGTCATACTAAGAGAAATGGCTGGGAaaacaaac                          >  1:20336655/1‑35 (MQ=255)
           tGTCATACTAAGAGAAATGGCTGGGGAaacaaaca                         >  1:2063377/1‑35 (MQ=255)
           tGTCATACTAAGAGAAATGGCTGGGAAaacaaaca                         >  1:10101522/1‑35 (MQ=255)
           ggatcgtgcgctggaagtggctgGgaaaacaaaac                         >  1:4401152‑M2/24‑33 (MQ=255)
            gTCATACTAAGAGAAATGGCTGGGAAAacaaacaa                        <  1:7630278/35‑1 (MQ=255)
            gTCATACTAAGAGAAATGGCTGGGAAAacaaacaa                        <  1:1073165/35‑1 (MQ=255)
            gTCATACTAAGAGAAATGGCTGGGAAAacaaacaa                        <  1:11379903/35‑1 (MQ=255)
            gTCATACTAAGAGAAATGGCTGGGAAAacaaacaa                        <  1:13742385/35‑1 (MQ=255)
             tCATACTAAGAGAAATGGCTGGGAAAACAAACAag                       <  1:8735069/35‑1 (MQ=255)
             tCATACTAAGAGAAATGGCTGGGAAAACAAACAag                       <  1:8056500/35‑1 (MQ=255)
              cATACTAAGAGAAATGGCTGGGGAAaaanacnann                      >  1:3468054/1‑33 (MQ=21)
              cATACTAAGAGAAATGGCTGGGAAAACAAACAaga                      <  1:9593599/35‑1 (MQ=255)
              cATACTAAGAGAAATGGCTGGGAAAACAAACAaga                      >  1:19056234/1‑35 (MQ=255)
              cATACTAAGAGAAATGGCTGGGAAAACAAACAaga                      <  1:19092992/35‑1 (MQ=255)
               aTACTAAGAGAAATGGCTGGGGAAACAAACAagag                     >  1:6939494/1‑35 (MQ=255)
               aTACTAAGAGAAATGGCTGGGAAAACAAGCAagag                     <  1:4164142/35‑1 (MQ=255)
               aTACTAAGAGAAATGGCTGGGAAAACAAACAagag                     <  1:3783251/35‑1 (MQ=255)
                  cTAAGAGAAATGGCTGGGAAAACAAACAAgagaga                  <  1:4426428/35‑1 (MQ=255)
                   tAAGAGAAATGGCTGGGAAAACAAACAAGAGAGAc                 <  1:16591510/35‑1 (MQ=255)
                   tAAGAGAAATGGCTGGGAAAACAAACAAGAGAGAc                 <  1:134961/35‑1 (MQ=255)
                    aaGAGAAATGGCTGGGAAAACAAACAAGAGAGACt                >  1:9383808/1‑35 (MQ=255)
                    aaGAGAAATGGCTGGGAAAACAAACAAGAGAGACt                <  1:14250150/35‑1 (MQ=255)
                     atagaAATGGCTGGGAAAACAAACAAGAGAGACtt               >  1:16383412/3‑35 (MQ=255)
                     agagAAATGGCTGGGGAAACAAACAAGAGAGACtt               >  1:18046884/1‑35 (MQ=255)
                     agagAAATGGCTGGGAAAACAAACAAGAGAGACtt               <  1:4384699/35‑1 (MQ=255)
                      gagaAATGGCTGGGGAAACAAACAAGAGAGACttt              >  1:287310/1‑35 (MQ=255)
                      gagaAATGGCTGGGAAAACAAACAAGAGAGACttt              <  1:12742805/35‑1 (MQ=255)
                      gagaAATGGCTGGGAAAACAAACAAGAGAGACttt              <  1:728422/35‑1 (MQ=255)
                       agaAATGGCTGGGAAAACAAACAAGAGAGACTTTc             <  1:10040754/35‑1 (MQ=255)
                        gaAATGGCTGGGAAAACAAACAAGAGAGACTTTcc            <  1:1750925/35‑1 (MQ=255)
                        gaAATGGCTGGGAAAACAAACAAGAGAGACTTTcc            <  1:8686177/35‑1 (MQ=255)
                         aaaTGGCTGGGAAAACAAACAAGAGAGACTTTccc           >  1:11588443/1‑34 (MQ=255)
                         aaaTGGCTGGGAAAACAAACAAGAGAGACTTTCCt           <  1:5595851/35‑1 (MQ=255)
                         aaaTGGCTGGGAAAACAAACAAGAGAGACTTTCCt           >  1:13784211/1‑35 (MQ=255)
                         aaaTGGCTGGGAAAACAAACAAGAGAGACTTTCCt           >  1:15885697/1‑35 (MQ=255)
                          aaTGGCTGGGAAAACAAACAAGAGAGACTTTCCTg          <  1:7128912/35‑1 (MQ=255)
                           aTGGCTGGGAAAACAAACAAGAGAGACTTTCCTgg         <  1:19039331/35‑1 (MQ=255)
                            tggctgGGAAAACAAACAAGAGAGACTTTCCTGGa        <  1:25306‑M2/29‑1 (MQ=255)
                            tggctgGGAAAACAAACAAGAGAGACTTTCCTGGa        <  1:11680106‑M2/29‑1 (MQ=255)
                            tggctgGGAAAACAAACAAGAGAGACTTTCCTGGa        >  1:6843980‑M2/7‑35 (MQ=255)
                            tggctgGGAAAACAAACAAGAGAGACTTTCCTGGa        <  1:815512‑M2/29‑1 (MQ=255)
                             ggctgGGAAAACAAACAAGAGAGATTTTCCTGGaa       >  1:14132382‑M2/6‑35 (MQ=255)
                             ggctgGGAAAACAAACAAGAGAGACTTTCCTGGaa       >  1:12096305‑M2/6‑35 (MQ=255)
                             ggctgGGAAAACAAACAAGAGAGACTTTCCTGGaa       >  1:8432220‑M2/6‑35 (MQ=255)
                             ggctgGGAAAACAAACAAGAGAGACTTTCCTGGaa       <  1:20089557‑M2/30‑1 (MQ=255)
                             ggctgGGAAAACAAACAAGAGAGAATTTCCTGGaa       <  1:16247391‑M2/30‑1 (MQ=255)
                              gctgGGAAAACAAACAAGAGAGACTTTCCTGGaaa      >  1:2486165‑M2/5‑35 (MQ=255)
                              gctgGGAAAACAAACAAGAGAGACTTTCCTGGaaa      >  1:380091‑M2/5‑35 (MQ=255)
                               ctgGGAAAACAAACAAGAGAGACTTTCCTGGaaaa     <  1:817492‑M2/32‑1 (MQ=255)
                               ctgGGAAAACAAACAAGAGAGACTTTCCTGGaaaa     >  1:2542724‑M2/4‑35 (MQ=255)
                                tgGGAAAACAAACAAGAGAGACTTTCCTGGaaaaa    >  1:18644183‑M2/3‑35 (MQ=255)
                                tgGGAAAACAAACAAGAGAGACTTTCCTGGaaaaa    >  1:6813643‑M2/3‑35 (MQ=255)
                                tgGGAAAACAAACAAGAGAGACTTTCCTGGaaaaa    <  1:9017312‑M2/33‑1 (MQ=255)
                                tgGGAAAACAAACAAGAGAGACTTTCCTGGaaaaa    <  1:12354146‑M2/33‑1 (MQ=255)
                                 gGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAg   >  1:5482224‑M2/2‑35 (MQ=255)
                                 gGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAg   <  1:9630076‑M2/34‑1 (MQ=255)
                                  ggAAAACAAACAATAGAGACTTTCCTGGAAAAAGa  >  1:5255666/1‑35 (MQ=255)
                                  ggAAAACAAACAAGAGAGACTTTCCTGGAAAAAGa  >  1:1538936/1‑35 (MQ=255)
                                  ggAAAACAAACAAGAGAGACTTTCCTGGAAAAAGa  <  1:547892/35‑1 (MQ=255)
                                  ggAAAACAAACAAGAGAGACTTTCCTGGAAAAAGa  >  1:5295756/1‑35 (MQ=255)
                                  |                                  
AAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGA  >  REL606/4487597‑4487665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.