Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,737,112 | 0 | T→G | 6.8% | 3.2 ‑31.1 0.0 | 247 | C421W (TGT→TGG) | ascB | cryptic 6‑phospho‑beta‑glucosidase |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Rejected: Prediction has biased read strand distribution supporting polymorphism. | ||||||||||
Reads supporting (aligned to +/- strand): new base (25/0): ref base (55/167): total (80/167) | ||||||||||
Fisher's exact test strand distribution p-value = 3.02e-14 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
Only 100 of 300 total aligned reads displayed.
GCATTCCGCTGATGGGCTACACCACATGGGGCTGTATTGATTTAGTTTCCGCCTCTACGGGTGAAATGA > REL606/2737078‑2737146 | cATTCCGCTGATGGGCTACACCACATGGGGCTGTa < 1:10714029/35‑1 (MQ=255) aTTCCGCTGATGGGCTACACCACATGGGGCTGTAt < 1:18991819/35‑1 (MQ=255) aTTCCGCTGATGGGCTACACCACATGGGGCTGTAt > 1:7888893/1‑35 (MQ=255) aTTCCGCTGATGGGCTACACCACATGGGGCTGGAt > 1:16783930/1‑35 (MQ=255) aTTCCGCTGATGGGCTACACCACATGGGGCTGGAt > 1:9325816/1‑35 (MQ=255) ttCCGCTGATGGGCTACACCACATGGGGCTGTAtt < 1:17092076/35‑1 (MQ=255) ttCCGCTGATGGGCTACACCACATGGGGCTGTAtt < 1:17422373/35‑1 (MQ=255) ttCCGCTGATGGGCTACACCACATGGGGCTGTAtt < 1:3996381/35‑1 (MQ=255) tCCGCTGATGGGCTACACCACATGGGGCTGTATTg < 1:20162444/35‑1 (MQ=255) tCCGCTGATGGGCTACACCACATGGGGCTGTATTg < 1:11647880/35‑1 (MQ=255) tCCGCTGATGGGCTACACCACATGGGGCTGTATTg < 1:11963369/35‑1 (MQ=255) tCCGCTGATGGGCTACACCACATGGGGCTGGATTg > 1:15101686/1‑35 (MQ=255) ccGCTGATGGGCTACACCACATGGGGCTGTATTGa < 1:17957536/35‑1 (MQ=255) ccGCTGATGGGCTACACCACATGGGGCTGGAttta > 1:8294008/1‑33 (MQ=25) ccGCTGATGGGCTACACCACATGGGGCTGGATTGa > 1:12642763/1‑35 (MQ=255) ccGCTGATGGGCTACACCACATGGGGCTGGATTGa > 1:18512439/1‑35 (MQ=255) ccGCTGATGGGCTACACCACATGGGGCTGGATTGa > 1:19766744/1‑35 (MQ=255) ccGATGATGGGCTACACCACATGGGGCTGTATTGa < 1:6624994/35‑1 (MQ=255) cGCTGATGGGCTACACCACATGGGGCTGTATTggt > 1:12735122/1‑33 (MQ=255) cGCTGATGGGCTACACCACATGGGGCTGTATTGAt < 1:14128527/35‑1 (MQ=255) cGCTGATGGGCTACACCACATGGGGCTGTATTGAt > 1:1099324/1‑35 (MQ=255) cGCTGATGGGCTACACCACATGGGGCTGTATTGAt < 1:10348423/35‑1 (MQ=255) cGCTGATGGGCTACACCACATGGGGCTGGATTGAt > 1:13489232/1‑35 (MQ=255) gCTGATGGGCTACACCACATGGGGCTGTATTGAtt > 1:586708/1‑35 (MQ=255) gCTGATGGGCTACACCACATGGGGCTGTATTGAtt < 1:18078008/35‑1 (MQ=255) gCTGATGGGCTACACCACATGGGGCTGGATTTAtt > 1:18592017/1‑35 (MQ=25) gCTGATGGGCTACACCACATGGGGCTGGATTGAtt > 1:14893399/1‑35 (MQ=255) cTGATGGGCTACACCACATGGGGCTGTATTGTttt > 1:14469454/1‑35 (MQ=255) cTGATGGGCTACACCACATGGGGCTGTATTGAttt > 1:13746779/1‑35 (MQ=255) cTGATGGGCTACACCACATGGGGCTGGGTTTAttt > 1:8716625/1‑35 (MQ=21) cTGATGGGCTACACCACATGGGGCTGGCTTGAttt > 1:352904/1‑35 (MQ=25) cTGATGGGCTACACCACATGGGGCTGGATTGAttt > 1:15215197/1‑35 (MQ=255) cTGATGGGCTACACCACATGGGGCTGGATTGAttt > 1:4578349/1‑35 (MQ=255) tGATGGGCTACACCACATGGGGCTGTATTGATTTa < 1:15250651/35‑1 (MQ=255) tGATGGGCTACACCACATGGGGCTGTATTGATTTa < 1:14683689/35‑1 (MQ=255) tGATGGGCTACACCACATGGGGCTGTATTGATTTa < 1:18164270/35‑1 (MQ=255) tGATGGGCTACACCACATGGGGCTGTATTGATTTa > 1:578090/1‑35 (MQ=255) tGATGGGCTACACCACATGGGGCTGTATTGATTTa < 1:11418627/35‑1 (MQ=255) tGATGGGCTACACCACATGGGGCTGGATTGATTTa > 1:9848331/1‑35 (MQ=255) gATGGTCTACACCACATGGGGCTGGATTGATTTAg > 1:10096580/1‑35 (MQ=37) gATGGGCTACACCACATGGGGCTGGATTGATTTAg > 1:6075205/1‑35 (MQ=255) aTGGGCTACACCACATGGGGCTGTATTGATTTAGt < 1:2044340/35‑1 (MQ=255) aTGGGCTACACCACATGGGGCTGGATTTATTTAGt > 1:7557745/1‑35 (MQ=37) tGGGCTACACCACATGGGGCTGTATTGATTTAGtt < 1:15039542/35‑1 (MQ=255) tGGGCTACACCACATGGGGCTGTATTGATTTAGtt < 1:18359334/35‑1 (MQ=255) tGGGCTACACCACATGGGGCTGTATTGATTTAGtt < 1:11235950/35‑1 (MQ=255) tGGGCTACACCACATGGGGCTGTATTGATTTAGtt < 1:9696197/35‑1 (MQ=255) gggCTACACCACATGGGGCTGTATTGATTTAGttt < 1:10948066/35‑1 (MQ=255) gggCTACACCACATGGGGCTGGATTGATTTTGttt > 1:3108840/1‑35 (MQ=25) gggCTACACCACATGGGGCTGGATTGATTTAGttt > 1:19565477/1‑35 (MQ=255) ggCTACACCACATGGGGCTGTATTGATTTAGTTTc < 1:8654594/35‑1 (MQ=255) ggCTACACCACATGGGGCTGTATTGATTTAGTTTc < 1:13868656/35‑1 (MQ=255) gCTACACCACATGGGGCTGGATTGATTTNNtntnn > 1:2597176/1‑33 (MQ=25) gCTACACCACATGGGGCAGTATTGATTTAGTTTcc > 1:5394228/1‑35 (MQ=255) cTACACCACATGGGGCTGTATTGATTTAGTTTCCg < 1:4443703/35‑1 (MQ=255) cTACACCACATGGGGCTGTATTGATTTAGTTTCCg < 1:1338081/35‑1 (MQ=255) cTACACCACATGGGGCTGTATTGATTTAGTTTCCg > 1:15710147/1‑35 (MQ=255) acacCACATGGGGCTGTATTGATTTAGTTTCCGcc < 1:18886821/35‑1 (MQ=255) acacCACATGGGGCTGTATTGATTTAGTTTCCGcc < 1:18702465/35‑1 (MQ=255) acacCACATGGGGCTGTATTGATTTAGTTTCCGcc < 1:7127132/35‑1 (MQ=255) caccacATGGGGCTGTATTGATTTAGTTTCCGCct < 1:17203863/35‑1 (MQ=255) caccacATGGGGCTGTATTGATTTAGTTTCCGCct < 1:8342283/35‑1 (MQ=255) caccacATGGGGCTGTATTGATTTAGTTTCCGCct < 1:16040463/35‑1 (MQ=255) accacATGGGGCTGTATTGATTTAGTTTCCGCctc < 1:8189430/35‑1 (MQ=255) ccacATGGGGCTGTATTGATTTAGTTTCCGCctct < 1:5678705/35‑1 (MQ=255) ccacATGGGGCTGTATTGATTTAGTTTCCGCctct < 1:15461557/35‑1 (MQ=255) ccacATGGGGCTGGATTGATTTAGTTTCCGCctct > 1:8786370/1‑35 (MQ=255) cacaTGGGGCTGTATTGATTTAGTTTCCGCCTCTa < 1:6394854/35‑1 (MQ=255) cacaTGGGGCTGTATTGATTTAGTTTCCGCCTCTa < 1:15373909/35‑1 (MQ=255) aTGGGGCTGTATTGATTTAGTTTCCGCCTCTACgg > 1:12230845/1‑35 (MQ=255) aTGGGGCTGTATTGATTTAGTTTCCGCCTCTACgg < 1:13070438/35‑1 (MQ=255) aTGGGGCTGTATTGATTTAGTTTCCGCCTCTACgg < 1:15630279/35‑1 (MQ=255) aTGGGGCTGTATTGATTTAGTTTCCGCCTCTACgg < 1:2168179/35‑1 (MQ=255) aTGGGGCTGTATTGATTTAGTTTCCGCCTCTACgg > 1:14411492/1‑35 (MQ=255) tGGGGCTGTATTGATTTAGTTTCCGCCTCTACggg < 1:3781160/35‑1 (MQ=255) gggCTGTATTGATTTAGTTTCCGCCTCTACGGGTg < 1:7812252/35‑1 (MQ=255) gggCTGTATTGATTTAGTTTCCGCCTCTACGGGTg > 1:17722049/1‑35 (MQ=255) gggCTGTATTGATTTAGTTTCCGCCTCTACGGGTg < 1:16616194/35‑1 (MQ=255) ggCTGTATTGATTTAGTTTCCGCCTCTACGGGTGa < 1:12020806/35‑1 (MQ=255) gCTGTATTGATTTAGTTTCCGCCTCTACGGGTGaa > 1:12851091/1‑35 (MQ=255) gCTGTATTGATTTAGTTTCCGCCTCTACGGGTGaa > 1:486725/1‑35 (MQ=255) cTGTATTGATTTAGTTTCCGCCTCTACGGGTGaaa < 1:4178846/35‑1 (MQ=255) tGTATTGATTTAGTTTCCGCCTCTACGGGTGAAAt < 1:2010921/35‑1 (MQ=255) tGTATTGATTTAGTTTCCGCCTCTACGGGTGAAAt > 1:7241594/1‑35 (MQ=255) tGTATTGATTTAGTTTCCGCCTCTACGGGTGAAAt > 1:19204842/1‑35 (MQ=255) tGTATTGATTTAGTTTCCGCCTCTACGGGTGAAAt < 1:9077246/35‑1 (MQ=255) tGTATTGATTTAGTTTCCGCCTCTACGGGTGAAAt > 1:856177/1‑35 (MQ=255) gTATTGATTTAGTTTCCGCCTCTACGGGTGGAATg > 1:3254247/1‑35 (MQ=255) gTATTGATTTAGTTTCCGCCTCTACGGGTGAAATg > 1:5290059/1‑35 (MQ=255) gTATTGATTTAGTTTCCGCCTCTACGGGTGAAATg < 1:11903651/35‑1 (MQ=255) gTATTGATTTAGTTTCCGCCTCTACGGGTGAAATg > 1:15797618/1‑35 (MQ=255) gTATTGATTTAGTTTCCGCCTCTACGGGTGAAATg < 1:17693155/35‑1 (MQ=255) gTATTGATTTAGTTTCCGCCTCTACGGGTGAAATg < 1:11008772/35‑1 (MQ=255) tATTGATTTAGTTTCCGCCTCTACGGGTGAAATGa < 1:1636988/35‑1 (MQ=255) tATTGATTTAGTTTCCGCCTCTACGGGTGAAATGa < 1:2271192/35‑1 (MQ=255) tATTGATTTAGTTTCCGCCTCTACGGGTGAAATGa < 1:233339/35‑1 (MQ=255) tATTGATTTAGTTTCCGCCTCTACGGGTGAAATGa < 1:4659685/35‑1 (MQ=255) tATTGATTTAGTTTCCGCCTCTACGGGTGAAATGa > 1:555662/1‑35 (MQ=255) tATTGATTTAGTTTCCGCCTCTACGGGTGAAATGa > 1:74057/1‑35 (MQ=255) tATTGATTTAGTTTCCGCCTCTACGGGTGAAATGa < 1:6950795/35‑1 (MQ=255) | GCATTCCGCTGATGGGCTACACCACATGGGGCTGTATTGATTTAGTTTCCGCCTCTACGGGTGAAATGA > REL606/2737078‑2737146 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |