New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 741667 =102 (0.990)24 (0.310) 5/36 NT 25.9% coding (2171/2802 nt) sucA alpha‑ketoglutarate decarboxylase
?REL606 = 1476120 81 (0.790)coding (71/1176 nt) ydcO predicted benzoate transporter

TGCTCCGGCCCCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/741682‑741667
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCAGCGGCAATAATCTGGCAAGCAGCGATTGT  <  REL606/1476120‑1476087
                ||||||                                  
tgtTCCGGCCCCTGCCGTTGTTGTTCAGCGGCAAT                       <  1:7661950/32‑1
 gtTCCGGCCCCTGCCGTTGTTGTTCAGCGGCAATA                      <  1:18596170/33‑1
   TCCGGGCCCTGCCGTTGTTGTTCAGCGGCAATAAT                    <  1:841073/35‑1
   TCCGGCCCCTGCCGTTGTTGTTCAGCGGCAATAAT                    <  1:5857886/35‑1
   TCCAGCCCCTGCCGTTGTTGTTCAGCGGCAATAAT                    <  1:20123354/35‑1
    ggGGCCCCTGCCGTTGTTGTTCAGCGGCAATAATC                   <  1:17568907/33‑1
    CCGGGCCCTGCCGTTGTTGTTCAGCGGCAATAATC                   <  1:45607/35‑1
     CGGGCCCTGCCGTTGTTGTTCAGCGGCAATAATCT                  <  1:12276202/35‑1
     CGGCCCCTGCCGTTGTTGTTCAGCGGCAATAATCT                  <  1:20020974/35‑1
      GGCCCCTGCCGTTGTTGTTCAGCGGCAATAATCTG                 <  1:8215369/35‑1
      GGCCCCTGCCGTTGTTGTTCAGCGGCAATAATCTG                 <  1:8683079/35‑1
       ggCCCTGCCGTTGTTGTTCAGCGGCAATAATCTGG                <  1:3538475/33‑1
       ggCCCTGCCGTTGTTGTTCAGCGGCAATAATCTGG                <  1:402283/33‑1
       gcgCCTGCCGTTGTTGTTCAGCGGCAATAATCTGG                <  1:3954015/32‑1
       GCCCCTGCCGTTGTTGTTCAGCGGCAATAATCTGG                <  1:4985138/35‑1
        gCCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGt               <  1:2759880/34‑2
        CCCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGt               <  1:16407744/35‑2
         CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg              <  1:9579786/35‑3
         CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg              <  1:7406187/35‑3
         CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg              <  1:7181890/35‑3
         CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg              <  1:2506037/35‑3
         CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg              <  1:16705236/35‑3
         CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg              <  1:13154311/35‑3
         CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg              <  1:10926945/35‑3
                     TGTTCAGCGGCAATAATCTGGCAAGCAGCGATTGT  <  1:8834280/35‑1
                ||||||                                  
TGCTCCGGCCCCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/741682‑741667
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCAGCGGCAATAATCTGGCAAGCAGCGATTGT  <  REL606/1476120‑1476087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.