New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422594 =77 (0.750)21 (0.220) 7/44 NT 23.0% intergenic (‑281/+181) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter
?REL606 = 3721305 76 (0.740)coding (669/1191 nt) lldD L‑lactate dehydrogenase, FMN‑linked

TTATTTTCCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/422607‑422594
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGCCGATGTAATCTTCCAGTCCGGTCGGTTTG  <  REL606/3721305‑3721272
              ||                                  
aaATTTTCCCCCCCCCCCAGCCGATGTAATCTTCC                 <  1:18710264/33‑1
 aATTTTCTCCCCCCCCCAGCCGATGTAATCTTCCA                <  1:13785931/34‑1
  ATTTTTCCCCCCCCCCAGCCGATGTAATCTTCCAG               <  1:12296212/35‑1
  ATTTTCCCCCCCCCCCAGCCGATGTAATCTTCCAG               <  1:2348719/35‑1
  ATTTTCCCCCCCCCCCAGCCGATGTAATCTTCCAG               <  1:17894094/35‑1
   gTTTCCCCCCCCCCCAGCCGATGTAATCTTCCAGT              <  1:18464002/34‑1
   TTTTCCCCCCCCCCCAGCCGATGTAATCTTCCAGT              <  1:7743100/35‑1
   TTTTCCCCCCCCCCCAGCCGATGTAATCTTCCAGT              <  1:4658852/35‑1
    TTTCCCCCCCCCCCAGCCGATGTAATCTTCCAGTC             <  1:6881235/35‑1
    TTTCCCCCCCCCCCAGCCGATGTAATCTTCCAGTC             <  1:18016465/35‑1
    TTTCCCCCCCACCCAGCCGATGTAATCTTCCAGTC             <  1:12207830/35‑1
     TTCCCCCCCCCCCAGCCGATGTAATCTTCCAGTCC            <  1:11784737/35‑1
     TTCCCCCCCCCCCAGCCGATGTAATCTTCCAGTCC            <  1:18478216/35‑1
      tgCCCCCCCCCCAGCCGATGTAATCTTCCAGTCCG           <  1:5192345/33‑1
      cCCCCCCCCCCCAGCCGATGTAATCTTCCAGTCCG           <  1:9995398/34‑1
      TCCCCCCCCCCCAGCCGATGTAATCTTCCAGTCCG           <  1:10885431/35‑1
       CCCCCCCGCCCAGCCGATGTAATCTTCCAGTCCGG          <  1:2384379/35‑1
       CCCCCCCCCCCAGCCGATGTAATCTTCCAGTCCGG          <  1:18230304/35‑1
       CCCCCCCCCCCAGCCGATGTAATCTTCCAGTCCGG          <  1:2888696/35‑1
        CCCCCCCCCCAGCCGATGTAATCTTCCAGTCCGGT         <  1:4534102/35‑1
        CCCCCCCCCCAGCCGATGTAATCTTCCAGTCCGGT         <  1:4258475/35‑1
         CCCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTC        <  1:10077958/35‑1
         CCCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTC        <  1:1625819/35‑1
         CCCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTC        <  1:5169051/35‑1
         CCCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTC        <  1:13580606/35‑1
          CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG       <  1:10319730/35‑1
          CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG       <  1:7411329/35‑1
          CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG       <  1:10943397/35‑1
          CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG       <  1:3907711/35‑1
          CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG       <  1:3488904/35‑1
          CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG       <  1:16166460/35‑1
          CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG       <  1:16872806/35‑1
           CCCACCCAGCCGATGTAATCTTCCAGTCCGGTCGG      <  1:18972094/35‑1
            CCCCCCAGCCGATGTAATCTTACAGTCCGGTCGGT     <  1:16229267/35‑1
            CCCCCCAGCCGATGTAATCTCCCAGTCCGGTCGGT     <  1:19098206/35‑1
              CCCCAGCCGATGTAATCTTCCAGTCCGGTCGGTTT   <  1:14813667/35‑1
              CCCCAGCCGATGTAATCTTCCAGTCCGGTCGGTTT   <  1:6995359/35‑1
              CCCCAGCCGATGTAATCTTCCAGTCCGGTCGGTTT   <  1:7409213/35‑1
              CCCCAGCCGATGTAATCTTCCAGTCCGGTCGGTTT   <  1:7749575/35‑1
               CCCAGCCGATGTAATCTTCCAGTCCGGTCGGTTTG  <  1:15443920/35‑1
              ||                                  
TTATTTTCCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/422607‑422594
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGCCGATGTAATCTTCCAGTCCGGTCGGTTTG  <  REL606/3721305‑3721272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.