New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 422594 = | 77 (0.750) | 21 (0.230) | 4/42 | NT | 25.6% | intergenic (‑281/+181) | cyoA/ampG | cytochrome o ubiquinol oxidase subunit II/muropeptide transporter |
? | REL606 | 2573117 = | 55 (0.610) | intergenic (‑11/‑196) | yfhM/sseA | hypothetical protein/3‑mercaptopyruvate sulfurtransferase |
TACACGATTCAGCTAATGAGTCTTTATTTTCCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/422630‑422594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccTGCCACAATGGCCCGTTAGCAACGTCGAATAATT > REL606/2573117‑2573150 TACACGATTCAGCTAATGAGTCTTTATTTTCCCCC > 1:10373719/1‑35 TACACGATTCAGCTAATGAGTCTTTATTTTCCCCC > 1:16554410/1‑35 TACACGATTCAGCTAATGAGTCTTTATTTTCCCCC > 1:12286934/1‑35 TACACGATTCAGCTAATGAGTCTTTATTTTCCCCC > 1:5136536/1‑35 TACACGATTCAGCTAATGAGTCTTTATTTTCCCCC > 1:18867935/1‑35 ACACGATTCAGCTAATGAGTCTTTATTTTCCCCCC > 1:16396887/1‑35 ACACGATTCAGCTAATGAGTCTTTATTTTCCCCCC > 1:15030574/1‑35 CACGATTCAGCTAATGAGTCTTTATTTTCCCCCCC < 1:10450871/35‑1 CACGATTCAGCTAATGAGTCTTTATTTTCCCCCCC > 1:16010835/1‑35 CACGATTCAGCTAATGAGTCTTTATTTTCCCCCCC > 1:14960083/1‑35 CACGATTCAGCTAATGAGTCTTTATTTTCCCCCCC > 1:14734305/1‑35 tTTTATTTTCCCCCCCTGCCACAATGGCCCGTTAG < 1:5540532/34‑1 ttcATTTTCCCCCCCTGCCACAATGGCCCGTTAGC < 1:6866884/32‑1 ttcATTTTCCCCCCCTGCCACAATGGCCCGTTAGC < 1:13859741/32‑1 TTTATTTTCCCCCCCTGCCACAATGGCCCGTTAGC < 1:2281270/35‑1 tctTTTTCCCCCCCTGCCACAATGGCCCGTTAGCA < 1:6294266/32‑1 ctTTTTCCCCCCCTGCCACAATGGCCCGTTAGCAA < 1:13615835/33‑1 TATTTTCCCCCCCTGCCACAATGGCCCGTTAGCAA < 1:1797939/35‑1 tTTTTTCCCCCCTGCCACAATGGCCCGTTAGCAAC < 1:16331051/34‑1 tTTTTCCCCCCCTGCCACAATGGTCCGTTAGCAAC < 1:13895088/34‑1 tTTTTCCCCCCCTGCCACAATGGCCCGTTAGCAAC < 1:17456784/34‑1 ttcCCCCCCCTGCCACAATGGCCCGTTAGCAACGT < 1:8684239/32‑1 TTTTCCCCCCTGCCACAATGGCCCGTTAGCAACGT < 1:11603582/35‑1 TTTCCCCCCCTGCCACAATGGCCCGTTAGCAACGT < 1:8911054/35‑1 TTTCCCCCCCTGCCACAATGGCCCGTTAGCAACGT < 1:11643754/35‑1 TTTCCCCCCCTGCCACAATGGCCCGTTAGCAACGT < 1:14088975/35‑1 TTTCCCCCCCTGCCACAATGGCCCGTTAGCAACGT < 1:102746/35‑1 tcCCCCCCCTGCCACAATGGCCCGTTAGCAACGTC < 1:3203913/33‑1 TTCCCCCCCTGCCACAATGGCCCGTTAGCAACGTC < 1:13576837/35‑1 TTCCCCCCCTGCCACAATGGCCCGTTAGCAACGTC < 1:8569826/35‑1 TTCCCCCCCTGCCACAATGGCCCGTTAGCAACGTC < 1:1842392/35‑1 TTCCCCCCCTGCCACAATGGCCCGTTAGCAACGTC < 1:2219858/35‑1 TTCCCCCCCTGCCACAATGGCCCGTTAGCAACGTC < 1:2438790/35‑1 TTCCCCCCCTGCCACAAGGGCCCGTTAGCAACGTC < 1:17686798/35‑1 cCCCCCCCTGCCACAATGGCCCGTTAGCAACGTCG < 1:16525023/34‑1 tCCCCCCTGCCACAATGGCCCGTTAGCAACGTCGA < 1:4353793/34‑1 CCCCCCCTGCCACAATGGCCCGTTAGCAACGTCGA < 1:13066548/35‑1 CCCCCCTGCCACAATGGCCCGTTAGCAACGTCGAA < 1:9289387/35‑1 aCCCCTGCCAAAATGGCCCGTTAGCAACGTCGAAT < 1:6221520/34‑1 CCCCCTGCCACAATGGCCCGTTAGCAACGTCGAAT < 1:1376797/35‑1 CCCCTGCCACAATGGCCCGTTAGCAACGTCGAATA < 1:7448511/35‑1 CCCTGCCACAATGGCCCGTTAGCAACGTCGAATAA < 1:10997674/35‑1 CCCTGCCACAATGGCCCGTTAGCAACGTCGAATAA < 1:9400693/35‑1 CCCTGCCACAATGGCCCGTTAGCAACGTCGAATAA < 1:7852538/35‑1 CCCTGCCACAATGGCCCGTTAGCAACGTCGAATAA > 1:11303404/1‑35 CCCTGCCACAATGGCCCGTTAGCAACGTCGAATAA > 1:5074328/1‑35 CCCCGCCACAATGGCCCGTTAGCAACGTCGAATAA < 1:9242758/35‑1 CCTGCCACAATGGCCCGTTAGCAACGTCGAATAAT > 1:627511/1‑35 CCTGCCACAATGGCCCGTTAGCAACGTCGAATAAT < 1:3242126/35‑1 CCTGCCACAATGGCCCGTTAGCAACGTCGAATAAT > 1:20172555/1‑35 CCTGCCACAATGGCCCGTTAGCAACGTCGAATAAT < 1:18247369/35‑1 CTGCCACAATGGCCCGTTAGCAACGTCGAATAATT > 1:5218254/1‑35 CTGCCACAATGGCCCGTTAGCAACGTCGAATAATT > 1:5203228/1‑35 CTGCCACAATGGCCCGTTAGCAACGTCGAATAATT < 1:7529638/35‑1 CTGCCACAATGGCCCGTTAGCAACGTCGAATAATT > 1:2893837/1‑35 CTGCCACAATGGCCCGTTAGCAACGTCGAATAATT > 1:225289/1‑35 TACACGATTCAGCTAATGAGTCTTTATTTTCCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/422630‑422594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccTGCCACAATGGCCCGTTAGCAACGTCGAATAATT > REL606/2573117‑2573150 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |