New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1495878 =73 (0.710)13 (0.280) 3/22 NT 21.2% coding (215/1500 nt) ansP L‑asparagine transporter
?REL606 = 1714633 138 (1.340)intergenic (‑76/+90) ydhP/ECB_01628 putative transport protein (MFS family); b1657_2/predicted transporter

Only 100 of 176 total aligned reads displayed.

CTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCTGG  >  REL606/1495844‑1495912
                                  |                                  
cTCACCCAATGCACGCAGAATAAAAAACGAAAACa                                    >  1:13938656/1‑35 (MQ=255)
cTCACCCAATGCACGCAGAATAAAAAACGAAAACa                                    >  1:2538278/1‑35 (MQ=255)
cTCACCCAATGCACGCAGAATAAAAAACGAAAACa                                    >  1:19800400/1‑35 (MQ=255)
cTCACCCAATGCACGCAGAATAAAAAACGAAAACa                                    <  1:19055323/35‑1 (MQ=255)
 tCACCCAATGCACGCAGAATAAAAAACGAAAACaa                                   <  1:14513690/35‑1 (MQ=255)
 tCACCCAATGCACGCAGAATAAAAAACGAAAACaa                                   <  1:2041958/35‑1 (MQ=255)
 tCACCCAATGCACGCAGAATAAAAAACGAAAACaa                                   >  1:18702916/1‑35 (MQ=255)
  cACCCAATGCACGCAGAATAAAAAACGAAAACAAg                                  <  1:7113459/35‑1 (MQ=255)
  cACCCAATACACGCAGAATAAAAAACGAAAACAAg                                  <  1:4253086/35‑1 (MQ=255)
   aCCCAATGCACGCAGAATAAAAAACGAAAAGAAGc                                 <  1:7698451/35‑1 (MQ=255)
   aCCCAATGCACGCAGAATAAAAAACGAAAACAAGc                                 <  1:6374759/35‑1 (MQ=255)
    cccAATGCACGCAGAATAAAAAACGAAAACAAGcc                                >  1:1017770/1‑35 (MQ=255)
    cccAATGCACGCAGAATAAAAAACGAAAACAAGcc                                <  1:9259977/35‑1 (MQ=255)
    cccAATGCACGCAGAATAAAAAACGAAAACAAGcc                                >  1:7776091/1‑35 (MQ=255)
    cccAATGCACGCAGAATAAAAAACGAAAACAAGcc                                <  1:20601811/35‑1 (MQ=255)
     ccAATGCACGCAGAATAAAAAACGAAAACAAGCca                               >  1:14691407/1‑35 (MQ=255)
     ccAATGCACGCAGAATAAAAAACGAAAACAAGCca                               >  1:583767/1‑35 (MQ=255)
      cAATGCACGCAGAATAAAAAACGAAAACAAGCcac                              >  1:14602985/1‑35 (MQ=255)
       aaTGCACGCAGAATAAAAAACGAAAACAAGCcaca                             >  1:12319030/1‑35 (MQ=255)
       aaTGCACGCAGAATAAAAAACGAAAACAAGCcaca                             >  1:8078737/1‑35 (MQ=255)
        acgCACGAAAAAAAAAAAAAAAAAAAAAGCCACaa                            <  1:8442611/33‑1 (MQ=2)
        aTGCACGCAGAATAAAAAACGAAAACAAGCCACaa                            >  1:18362338/1‑35 (MQ=255)
        aTGCACGCAGAATAAAAAACGAAAACAAGCCACaa                            >  1:4396121/1‑35 (MQ=255)
        aTGCACGCAGAATAAAAAACGAAAACAAGCCACaa                            >  1:4211325/1‑35 (MQ=255)
        aTGCACGAAAAAAAAAAAAAAAAAAAAAGCCACaa                            <  1:18902093/35‑1 (MQ=9)
         tGCACGCAGAATAAAAAACGAAAACAAGCCACaaa                           >  1:3456086/1‑35 (MQ=255)
         tGCACGCAGAATAAAAAACGAAAACAAGCCACaaa                           >  1:1571303/1‑35 (MQ=255)
         tGCACGCAGAATAAAAAACGAAAACAAGCCACaaa                           >  1:4637247/1‑35 (MQ=255)
          gcacaaaaaaaaaaaaaaaaaaaaAAGCCACAAAt                          >  1:3844838‑M1/25‑35 (MQ=255)
          gCACGCAGAATAAAAAACGAAAACAAGCCACAAAt                          >  1:6178308/1‑35 (MQ=255)
          gCACGCAGAATAAAAAACGAAAACAAGCCACAAAt                          >  1:8388869/1‑35 (MQ=255)
          gCACGCAGAATAAAAAACGAAAACAAGCCACAAAt                          >  1:10948009/1‑35 (MQ=255)
           cACGCAGAATAAAAAACGAAAACAAGCCACAAAtt                         >  1:14867091/1‑35 (MQ=255)
            acgaaaaaaaaaaaaaaaaaaaAAGCCACAAATta                        >  1:13530190‑M1/23‑35 (MQ=255)
            aaaaaaaaaaaaaaaaaaaaaaAAGCCACAAATta                        >  1:1513531‑M1/23‑35 (MQ=255)
            aCGCAGAATAAAAAACGAAAACAAGCCACAAATta                        >  1:5576546/1‑35 (MQ=255)
             cGCAGAATAAAAAACGAAAACAAGCCACAAATtan                       >  1:7562737/1‑35 (MQ=255)
             cGCAGAATAAAAAACGAAAACAAGCCACAAATtaa                       >  1:5693706/1‑35 (MQ=255)
             cGCAGAATAAAAAACGAAAACAAGCCACAAATtaa                       >  1:6743265/1‑35 (MQ=255)
              gCAGAATAAAAAACGAAAACAAGCCACAAATtaaa                      >  1:18024251/1‑35 (MQ=255)
              gCAGAATAAAAAACGAAAACAAGCCACAAATtaaa                      >  1:4713129/1‑35 (MQ=255)
               cAGAATAAAAAACTAAAACAAGCCACAAATtaaat                     >  1:8319767/1‑35 (MQ=255)
               cAGAATAAAAAACGAAAACAAGCCACAAATtaaat                     >  1:1127382/1‑35 (MQ=255)
               cAGAATAAAAAACGAAAACAAGCCACAAATtaaat                     >  1:3114699/1‑35 (MQ=255)
               cAGAATAAAAAACGAAAACAAGCCACAAATtaaat                     >  1:7133004/1‑35 (MQ=255)
               cAGAATAAAAAACGAAAACAAGCCACAAATtaaat                     >  1:2267843/1‑35 (MQ=255)
                agaaaaaaaaaaaaaaaaAAGCCACAAATtaaata                    >  1:16544902‑M1/19‑35 (MQ=255)
                aaaaaaaaaaaaaaaaaaAAGCCACAAATtaaata                    >  1:13095537‑M1/19‑35 (MQ=255)
                 gAATAAANAACGAAAACAAGCCACANATtaaataa                   >  1:4341879/1‑35 (MQ=255)
                 gAATAAAAAACGAAAACAAGCCACAAATtaaataa                   >  1:16955752/1‑35 (MQ=255)
                 gAATAAAAAACGAAAACAAGCCACAAATtaaataa                   >  1:3196087/1‑35 (MQ=255)
                 gAATAAAAAACGAAAACAAGCCACAAATtaaataa                   >  1:1588263/1‑35 (MQ=255)
                 gAATAAAAAACGAAAACAAGCCACAAATtaaataa                   >  1:7235377/1‑35 (MQ=255)
                 aaaaaaaaaaaaaaaaaAAGCCACAAATtaaataa                   >  1:13210334‑M1/18‑35 (MQ=255)
                  aaaaaaaaacaaaaaaAAGCCACAAATtaaataaa                  >  1:17678028‑M1/17‑35 (MQ=255)
                  aaaaaaaaaaaaaaaaAAGCCACAAATtaaataaa                  >  1:11224695‑M1/17‑35 (MQ=255)
                  aaTAAAAAACGAAAACAAGCCACAAATtaaataaa                  >  1:11899678/1‑35 (MQ=255)
                   aaaaaaaaaaaaaaaAAGCCACAAATTAAATAAAc                 >  1:14144400‑M1/16‑35 (MQ=255)
                   aTAAAAAACGAAAACAAGCCACAAATTAAATAAAc                 >  1:16265924/1‑35 (MQ=255)
                   aTAAAAAACGAAAACAAGCCACAAATTAAATAAAc                 >  1:6444177/1‑35 (MQ=255)
                   aTAAAAAACGAAAACAAGCCACAAATTAAATAAAc                 >  1:8590326/1‑35 (MQ=255)
                    aaaaaaaaaaaaaaAAGCCACAAATTAAATAAAcc                >  1:20150861‑M1/15‑35 (MQ=255)
                     aaaaaaaaaaaaaAAGCCACAAATTAAATAAAcca               >  1:12805398‑M1/14‑35 (MQ=255)
                     aaaaaaCGAAAACAAGCCACAAATTAAATAAAcca               >  1:1497786/1‑35 (MQ=255)
                     aaaaaaCGAAAACAAGCCACAAATTAAATAAAcca               >  1:5193516/1‑35 (MQ=255)
                      aaaaaaaaaaaaAAGCCACAAATTAAATAAAccag              >  1:2982251‑M1/13‑35 (MQ=255)
                      aaaaaCGAAAACAAGCCACAAATTAAATAAAccag              >  1:8227038/1‑35 (MQ=255)
                       aaaaaaaaaaaAAGCCACAAATTAAATAAAccagt             >  1:19761796‑M1/12‑35 (MQ=255)
                       aaaaaaaaaaaAAGCCACAAATTAAATAAAccagt             >  1:6400014‑M1/12‑35 (MQ=255)
                       aaaaaaaaaaaAAGCCACAAATTAAATAAAccagt             >  1:16519350‑M1/12‑35 (MQ=255)
                        aaaCGAAAACAAGCCACAAATTAAATACAccagtg            >  1:13796538/1‑35 (MQ=255)
                         aaCAAAAAAAAGCCACAAACTAAATAAAccagtgc           <  1:3372786/35‑1 (MQ=25)
                           caaaaaaAAGCCACAAATTAAATAAAccagtgcca         >  1:9881888‑M1/8‑35 (MQ=255)
                           aaaaaaaAAGCCACAAATTAAATAAAccagtgcca         >  1:1094358‑M1/8‑35 (MQ=255)
                           aaaaaaaAAGCCACAAATTAAATAAAccagtgcca         >  1:17777885‑M1/8‑35 (MQ=255)
                           aaaaaaaAAGCCACAAATTAAATAAAccagtgcca         >  1:16746764‑M1/8‑35 (MQ=255)
                            gAAAACAAGCCACAAATTAAATAAAccagtgccag        >  1:457025/1‑35 (MQ=255)
                            gAAAACAAGCCACAAATTAAATAAAccagtgccag        >  1:2348763/1‑35 (MQ=255)
                            aaaaaaAAGCCACAAATTAAATAAAccagtgccag        >  1:4809283‑M1/7‑35 (MQ=255)
                            aaaaaaAAGCCACAAATTAAATAAAccagtgccag        >  1:10079278‑M1/7‑35 (MQ=255)
                             aaaaaAAGCCACAAATTAAATAAAccagtgccagt       >  1:897934‑M1/6‑35 (MQ=255)
                             aaaaCAAGCCACAAATTAAATAAAccagtgccagt       >  1:10051146/1‑35 (MQ=255)
                             aaaaCAAGCCACAAATTAAATAAAccagtgccagt       >  1:12919028/1‑35 (MQ=255)
                             aaaaCAAGCCACAAATTAAATAAAccagtgccagt       >  1:18080533/1‑35 (MQ=255)
                              aaaCAAGCCACAAATTAAATAAAccagtgccagtg      >  1:20270487/1‑35 (MQ=255)
                              aaaCAAGCCACAAATTAAATAAAccagtgccagtg      >  1:15630810/1‑35 (MQ=255)
                               aaCAAGCCACAAATTAAATAAACcagtgccagtgc     >  1:17921880/1‑35 (MQ=255)
                                aaAAGCCACAAATTAAATAAACCAGTGCCAGTGCt    >  1:1427216‑M1/3‑35 (MQ=255)
                                aaAAGCCACAAATTAAATAAACCAGTGCCAGTGCt    >  1:18794021‑M1/3‑35 (MQ=255)
                                aCAAGCCACAAATTAAATAAACCAGTGCCAGTGCt    >  1:11746558/1‑35 (MQ=255)
                                 cAAGCCACAAATTAAATAAACCAGTGCCAGTGCTg   >  1:12924458/1‑35 (MQ=255)
                                 cAAGCCACAAATTAAATAAACCAGTGCCAGTGCTg   >  1:890352/1‑35 (MQ=255)
                                 cAAGCCACAAATTAAATAAACCAGTGCCAGTGCTg   >  1:11767947/1‑35 (MQ=255)
                                 cAAGCCACAAATTAAATAAACCAGTGCCAGTGCTg   >  1:10610711/1‑35 (MQ=255)
                                 aAAGCCACAAATTAAATAAACCAGTGCCAGTGCTg   >  1:1212107‑M1/2‑35 (MQ=255)
                                 aAAGCCACAAATTAAATAAACCAGTGCCAGTGCTg   >  1:15946010‑M1/2‑35 (MQ=255)
                                  aaGCCACAAATTAAATAAACCAGTGCCAGTGCTgg  <  1:11660220/35‑1 (MQ=255)
                                  aaGCCACAAATTAAATAAACCAGTGCCAGTGCTgg  <  1:12533303/35‑1 (MQ=255)
                                  aaGCCACAAATTAAATAAACCAGTGCCAGTGCTgg  <  1:9537980/35‑1 (MQ=255)
                                  aaGCCACAAATTAAATAAACCAGTGCCAGTGCTgg  <  1:2410925/35‑1 (MQ=255)
                                  |                                  
CTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCTGG  >  REL606/1495844‑1495912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.