New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2327674 = | 62 (0.600) | 14 (0.160) | 5/42 | NT | 15.8% | coding (383/462 nt) | elaA | predicted acyltransferase with acyl‑CoA N‑acyltransferase domain |
? | REL606 | = 4527187 | 95 (1.060) | coding (1178/2637 nt) | fimD | outer membrane usher protein, type 1 fimbrial synthesis |
Only 100 of 192 total aligned reads displayed.
GAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTT > REL606/4527153‑4527221 | gaATACCGTAGTGGAAATGCGCAGCAGGAAAAAcc < 1:20025671/35‑1 (MQ=255) gaATACCGTAGTGGAAATGCGCAGCAGGAAAAAcc < 1:9136580/35‑1 (MQ=255) gaATACCGTAGTGGAAATGCGCAGCAGGAAAAAcc > 1:16959313/1‑35 (MQ=255) gaATACCGTAGTGGAAATGCACAGCAGGAAAAAcc < 1:12124197/35‑1 (MQ=255) aTACCGTAGTGGAAATGCGCAGCAGGAAAAACCcc < 1:18878891‑M2/35‑3 (MQ=255) aTACCGTAGTGGAAATGCGCAGCAGGAAAAACCcc < 1:10946702‑M2/35‑3 (MQ=255) aTACCGTAGTGGAAATGCGCAGCAGGAAAAACCcc > 1:11914876‑M2/1‑33 (MQ=255) aTACCGTAGTGGAAATGCGCAGCAGGAAAAACCcc > 1:18516651‑M2/1‑33 (MQ=255) tACCGTAGTGGAAATGCGCAGCAGGAAAAACCccg > 1:20334063‑M2/1‑32 (MQ=255) tACCGTAGTGGAAATGCGCAGCAGGAAAAACCccg > 1:1553653‑M2/1‑32 (MQ=255) tACCGTAGTGGAAATGCGCAGCAGGAAAAACCccg > 1:2722963‑M2/1‑32 (MQ=255) ccGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCt < 1:5652148/35‑1 (MQ=255) ccGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCt > 1:11771682/1‑35 (MQ=255) ccGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCt > 1:16892165/1‑35 (MQ=255) cGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCtt > 1:13624816/1‑35 (MQ=255) cGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCtt > 1:13057355/1‑35 (MQ=255) cGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCtt < 1:3810970/35‑1 (MQ=255) gTAGTGGAAATGCGCAGCAGGAAAAACCCCGCttt < 1:17168835/35‑1 (MQ=255) gTAGTGGAAATGCGCAGCAGGAAAAACCCCGCttt < 1:13662166/35‑1 (MQ=255) gTAGTGGAAATGCGCAGCAGGAAAAACCCCGCttt > 1:13826708/1‑35 (MQ=255) gTAGTGGAAATGCGCAGCAGGAAAAACCCCGCttt > 1:7469901/1‑35 (MQ=255) gTAGTGGAAATGCGCAGCAGGAAAAACCCCGCttt < 1:5648172/35‑1 (MQ=255) tAGTGGAAATGCGCAGCAGGAAAAACCCCGCtttt < 1:12368381/35‑1 (MQ=255) tAGTGGAAATGCGCAGCAGGAAAAACCCCGCtttt < 1:14677084/35‑1 (MQ=255) tAGTGGAAATGCGCAGCAGGAAAAACCCCGCtttt < 1:3654651/35‑1 (MQ=255) tAGTGGAAATGCGCAGCAGGAAAAACCCCGCtttt < 1:5140845/35‑1 (MQ=255) aGTGGAAATGCGCAGCAGGAAAAACCCCGCttttt > 1:364182/1‑35 (MQ=255) aGTGGAAATGCGCAGCAGGAAAAACCCCGCttttt > 1:3967930/1‑35 (MQ=255) aGTGGAAATGCGCAGCAGGAAAAACCCCGCttttt > 1:939298/1‑35 (MQ=255) aGTGGAAATGCGCAGCAGGAAAAACCCCGCttttt < 1:16602563/35‑1 (MQ=255) gTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTc < 1:17904277/35‑1 (MQ=255) gTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTc < 1:2958497/35‑1 (MQ=255) tGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTcc < 1:6809315/35‑1 (MQ=255) tGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTcc < 1:5292350/35‑1 (MQ=255) ggAAATGCGCAGAAGGAAAAACCCCGCTTTTTCCa < 1:11604717/35‑1 (MQ=255) gAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCag > 1:16025203/1‑35 (MQ=255) aaaTGCGCAGCAGGAAAAACCCCGCTTTTTCCaga > 1:20584976/1‑35 (MQ=255) aaaTGCGCAGCAGGAAAAACCCCGCTTTTTCCaga > 1:8585917/1‑35 (MQ=255) aaaTGCGCAGCAGGAAAAACCCCGCTTTTTCCaga < 1:17551977/35‑1 (MQ=255) aaaTGCGCAGCAGGAAAAACCCCGCTTTTTCCaga < 1:315967/35‑1 (MQ=255) aaTGCGCAGCAGGAAAAACCCCGCTTTTTCCagag > 1:4526724/1‑35 (MQ=255) aaTGCGCAGCAGGAAAAACCCCGCTTTTTCCagag > 1:11886060/1‑35 (MQ=255) aaTGCGCAGCAGGAAAAACCCCGCTTTTTCCagag > 1:12845950/1‑35 (MQ=255) aaTGCGCAGCAGGAAAAACCCCGCTTTTTCCagag < 1:8737069/35‑1 (MQ=255) aTGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGt < 1:7705288/35‑1 (MQ=255) aTGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGt > 1:15988557/1‑35 (MQ=255) aTGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGt < 1:7984775/35‑1 (MQ=255) tGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTa < 1:7294111/35‑1 (MQ=255) cgcAGCAGGAAAAACCCCGCTTTTTCCAGAGTACa < 1:3456582/35‑1 (MQ=255) cgcAGCAGGAAAAACCCCGCTTTTTCCAGAGTACa < 1:20177054/35‑1 (MQ=255) cgcAGCAGGAAAAACCCCGCTTTTTCCAGAGTACa > 1:16572169/1‑35 (MQ=255) cgcAGCAGGAAAAACCCCGCTTTTTCCAGAGTACa > 1:16699212/1‑35 (MQ=255) gaagcagAAAATACCCCGCTTTTTCCAGAGTACAt < 1:8182564/33‑1 (MQ=25) cagcagGAAAAACCCCGCTTTTTCCAGAGTACAtt > 1:4141503/1‑35 (MQ=255) cagcagGAAAAACCCCGCTTTTTCCAGAGTACAtt < 1:9187063/35‑1 (MQ=255) cagcagGAAAAACCCCGCTTTTTCCAGAGTACAtt < 1:2355870/35‑1 (MQ=255) cagcagGAAAAACCCCGCTTTTTCCAGAGTACAtt > 1:18103839/1‑35 (MQ=255) agcagGCAAAACCCCGCTTTTTCCAGAGTACATTa > 1:5905100/1‑35 (MQ=255) agcagGAAAAACCCCGCTTTTTCCAGAGTACATTa < 1:4818638/35‑1 (MQ=255) acaggGAAAACCccgaaactctggtagaagttttg > 1:18760472‑M2/2‑12 (MQ=255) cagGAAAAACCCCGCTTTTTCCAGAGTACATTACt > 1:7864898/1‑35 (MQ=255) cagGAAAAACCCCGCTTTTTCCAGAGTACATTACt < 1:12222608/35‑1 (MQ=255) cagAAAAAACCccgaaactctggtagaagttttgc > 1:15619384‑M2/1‑11 (MQ=255) agGAAAAACCCCGCTTTTTCCAGAGTACATTACTc > 1:10731010/1‑35 (MQ=255) agGAAAAACCCCGCTTTTTCCAGAGTACATTACTc < 1:5133007/35‑1 (MQ=255) agGAAAAACCCCGCTTTTTCCAGAGTACATTACTc < 1:8264082/35‑1 (MQ=255) agAAAAAACCccgaaactctggtagaagttttgca > 1:8006457‑M2/1‑10 (MQ=255) ggAAAAACCCCGCTTTTTCCAGAGTACATTACTcc > 1:9029334/1‑35 (MQ=255) ggAAAAACCCCGCTTTTTCCAGAGTACATTACTcc < 1:9589632/35‑1 (MQ=255) ggAAAAACCCCGCTTTTTCCAGAGTACATTACTcc < 1:17830701/35‑1 (MQ=255) ggAAAAACCCCGCTTTTTCCAGAGTACATTACTcc < 1:20093956/35‑1 (MQ=255) gAAAAACCCCGCTTTTTCCAGAGTACATTACTCCa > 1:8477188/1‑35 (MQ=255) gAAAAACCCCGCTTTTTCCAGAGTACATTACTCCa < 1:8430369/35‑1 (MQ=255) gAAAAACCCCGCTTTTTCCAGAGTACATTACTCCa < 1:1610313/35‑1 (MQ=255) gAAAAACCCCGCTTTTTCCAGAGTACATTACTCCa > 1:1970064/1‑35 (MQ=255) gAAAAACCCCGCTTTTTCCAGAGTACATTACTCCa < 1:19490687/35‑1 (MQ=255) aaaaaCCccgaaactctggtagaagttttgcagat > 1:736841‑M2/1‑7 (MQ=255) aaaaaCCCCGCTTTTTCCAGAGTACATTACTCCAc < 1:18273799/35‑1 (MQ=255) aaaaaCCCCGCTTTTTCCAGAGTACATTACTCCAc > 1:5799010/1‑35 (MQ=255) aaaaaCCCCGCTTTTTCCAGAGTACATTACTCCAc > 1:10395710/1‑35 (MQ=255) aaaaCCCCGCTTTTTCCAGAGTACATTACTCCACg < 1:16057196/35‑1 (MQ=255) aaaaCCCCGCTTTTTCCAGAGTACATTACTCCACg < 1:15275895/35‑1 (MQ=255) aaaCCccgaaactctggtagaagttttgcagatgc > 1:17593421‑M2/1‑5 (MQ=255) aaaCCccgaaactctggtagaagttttgcagatgc > 1:15020967‑M2/1‑5 (MQ=255) aaCCccgaaactctggtagaagttttgcagatgcg > 1:5190630‑M2/1‑4 (MQ=255) aaCCCCGCTTTTTCCAGGGTACATTACTCCACGGc < 1:13738574/35‑1 (MQ=255) aaCCCCGCTTTTTCCAGAGTACATTACTCCACGGc < 1:7499813/35‑1 (MQ=255) aaCCCCGCTTTTTCCAGAGTACATTACTCCACGGc > 1:2160719/1‑35 (MQ=255) aaACccgaaactctggtagaagttttgcagatgcg > 1:20553211‑M2/1‑4 (MQ=255) aCCCCGCTTTTTCCAGAGTACATTACTCCACGGcc < 1:12001655/35‑1 (MQ=255) aCCCCGCTTTTTCCAGAGTACATTACTCCACGGcc > 1:10665270/1‑35 (MQ=255) ccccgaaactctggtagaagttttgcagatgcgcc > 1:15694487‑M2/1‑2 (MQ=255) ccccGCTTTTTCCAGAGTACATTACTCCACGGCCt < 1:13231535/35‑1 (MQ=255) ccccGCTTTTTCCAGAGTACATTACTCCACGGCCt > 1:4689696/1‑35 (MQ=255) acccgaaactctggtagaagttttgcagatgcgcc > 1:19369526‑M2/2‑2 (MQ=255) cccgaaactctggtagaagttttgcagatgcgcct > 1:12327218‑M2/1‑1 (MQ=255) cccgaaactctggtagaagttttgcagatgcgcct > 1:3767543‑M2/1‑1 (MQ=255) cccGCTTTTTCCAGAGTACATTACTCCACGGCCtt > 1:19052425/1‑35 (MQ=255) cccGCTTTTTCCAGAGTACATTACTCCACGGCCtt > 1:643141/1‑35 (MQ=255) cccGCTTTTTCCAGAGTACATTACTCCACGGCCtt > 1:1001938/1‑35 (MQ=255) | GAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTT > REL606/4527153‑4527221 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |