New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 640120 =107 (1.040)10 (0.100) 3/46 NT 11.1% intergenic (+38/+17) cspE/ccrB cold shock protein E/camphor resistance protein CrcB
?REL606 2388696 = 58 (0.590)coding (457/810 nt) yfcA conserved inner membrane protein

Only 100 of 240 total aligned reads displayed.

ACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGC  >  REL606/640086‑640154
                                  |                                  
ttacccttcgcgttaatagccggtggctgcgtcgg                                    <  1:18332797‑M1/1‑1 (MQ=255)
ttacccttcgcgttaatagccggtggctgcgtcgg                                    <  1:14191187‑M1/1‑1 (MQ=255)
cgaggcggcggcaaacatatgcggatattTTAGCg                                    <  1:5835279‑M1/6‑1 (MQ=255)
cgaggcggcggcaaacatatgcggatattTCAGCg                                    >  1:3799593‑M1/30‑35 (MQ=255)
cgaggcggcggcaaacatatgcggatattTCAGCg                                    >  1:16343230‑M1/30‑35 (MQ=255)
cgaggcggcggcaaacatatgcggatattTCAGCg                                    >  1:7177549‑M1/30‑35 (MQ=255)
aCGTCAGCAAGAATTCAAAACCCGCTTAATCAGCg                                    >  1:17210688/1‑35 (MQ=255)
aCGTCAGCAAGAATTCAAAACCCGCTTAATCAGCg                                    >  1:12224899/1‑35 (MQ=255)
aCGTCAGCAAGAATTCAAAACCCGCTTAATCAGCg                                    >  1:8489718/1‑35 (MQ=255)
 tacccttcgcgttaatagccggtggctgcggcggg                                   <  1:260464‑M1/2‑1 (MQ=255)
 gaggcggcggcaaacatatgcggatattTCAGCgg                                   >  1:17040267‑M1/29‑35 (MQ=255)
 gaggcggcggcaaacatatgcggatattTCAGCgg                                   >  1:5156752‑M1/29‑35 (MQ=255)
 gaggcggcggcaaacatatgcggatattTCAACgg                                   <  1:14931991‑M1/7‑1 (MQ=255)
 cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg                                   >  1:9491945/1‑35 (MQ=255)
 cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg                                   >  1:5979251/1‑35 (MQ=255)
 cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg                                   <  1:11360605/35‑1 (MQ=255)
 cGTCAGCAAGAATTCAAAACCAGCTTAATCAGCgg                                   <  1:16011018/35‑1 (MQ=255)
  gTCAGCAAGAATTCAAAACCCGCTTAATCAGCggg                                  >  1:6767447/1‑35 (MQ=255)
  acccttcgcgttaatagccggtggctgcgtcgggg                                  <  1:10151763‑M1/3‑1 (MQ=255)
   tCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt                                 <  1:16295675/35‑1 (MQ=255)
   tCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt                                 >  1:15795723/1‑35 (MQ=255)
   tCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt                                 <  1:5557492/35‑1 (MQ=255)
   tCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt                                 <  1:9369182/35‑1 (MQ=255)
   cccttcgcgttaatagccggtggctgcgtcggggg                                 <  1:12867182‑M1/4‑2 (MQ=255)
   cccttcgcgttaatagccggtggctgcgtcgGGGt                                 <  1:17102213‑M1/4‑1 (MQ=255)
    cAGCAAGAATTCAAAACCCGCTTAATCAGCGTGtt                                >  1:247349/1‑35 (MQ=255)
    cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtt                                >  1:4015802/1‑35 (MQ=255)
    cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtt                                <  1:13102871/35‑1 (MQ=255)
     aGCAAGAATTCAAAACCCGCTTAATCAGCGGGttt                               >  1:15655581/1‑35 (MQ=255)
     aGCAAGAATTCAAAACCCGCTTAATCAGCGGGttt                               >  1:17968084/1‑35 (MQ=255)
     aGCAAGAATTCAAAACCAGCTTAATCAGCGGGttt                               <  1:9474020/35‑1 (MQ=255)
      ttcgcgttaatagccggtggctgcgtcgGGGtttt                              <  1:17624291‑M1/7‑1 (MQ=255)
      ggcggcaaacatatgcggatattTTAGCGGGtttt                              <  1:17338986‑M1/12‑1 (MQ=255)
      gCAAGAATTCAAAACCCGCTTAATCAGCGGGtttt                              <  1:2031126/35‑1 (MQ=255)
      ctaaGAATTCAAAACCCGCTTAATCAGCGGGtttt                              <  1:12147515/33‑1 (MQ=255)
       gcggcaaacatatgcggatattTCAGCGGGttttt                             <  1:4296574‑M1/13‑1 (MQ=255)
       cAAGAATTCAAAACCCGCTTAATCAGCGGGttttt                             >  1:19690618/1‑35 (MQ=255)
       cAAGAATTCAAAACCCGCTTAATCAGCGGGttttt                             >  1:19470248/1‑35 (MQ=255)
        cggcaaacatatgcggatattTCAGCGGGtttttt                            <  1:10609030‑M1/14‑1 (MQ=255)
        cggcaaacatatgcggatattTCAGCGGGtttttt                            <  1:20088637‑M1/14‑1 (MQ=255)
        aaGAATTCAAAACCCGCTTAATCAGCGGGtttttt                            >  1:16422051/1‑35 (MQ=255)
        aaGAATTCAAAACCCGCTTAATCAGCGGGtttttt                            <  1:15245764/35‑1 (MQ=255)
         ggcaaacatatgcggatattTCAGCGGGttttttt                           <  1:12025664‑M1/15‑1 (MQ=255)
          gcaaacatatgcggatattTCAGCGGGtttttttt                          <  1:5658159‑M1/16‑1 (MQ=255)
          gcaaacatatgcggatattTCAGCGGGgttttttt                          <  1:18978217‑M1/16‑1 (MQ=255)
          gAATTCAAAACCCGCTTAATCAGCGGGtttttttt                          <  1:4263052/35‑1 (MQ=255)
          gAATTCAAAACCCGCTTAATCAGCGGGtttttttt                          <  1:9191565/35‑1 (MQ=255)
          gAATTCAAAACCCGCTTAATCAGCGGGtttttttt                          >  1:9907626/1‑35 (MQ=255)
          gAATTCAAAACCCGCTTAATCAGCGGGtttttttt                          <  1:10113080/35‑1 (MQ=255)
          gAATTCAAAACCCGCTTAATCAGCGGGtttttctt                          >  1:1360201/1‑35 (MQ=255)
          cgttaatagccggtggctgcgtcgGGGtttttttt                          <  1:7304020‑M1/11‑1 (MQ=255)
          cgttaatagccggtggctgcgtcgGGGtttttttt                          <  1:1520549‑M1/11‑1 (MQ=255)
           gttaatagccggtggctgcgtcgGGgttttttttg                         <  1:11913648‑M1/12‑2 (MQ=255)
           aaTTCAAAACCCGCTTAATCAGCGGGttttttttt                         >  1:19895322/1‑35 (MQ=255)
           aaTTCAAAACCCGCTTAATCAGCGGGttttttttt                         >  1:5897836/1‑35 (MQ=255)
            ttaatagccggtggctgcgtcgGGGTTTTTTTTTg                        <  1:5023736‑M1/13‑1 (MQ=255)
            aaacatatgcggatattTCAGCGGttttttttttc                        <  1:16724227‑M1/18‑2 (MQ=255)
            aTTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTg                        <  1:12231868/35‑1 (MQ=255)
             ttCAAAACCCGCTTAATCAGCGGGTTTTTTTTTgg                       <  1:16639035/35‑1 (MQ=255)
             aacatatgcggatattTCAGCgggttttttttatc                       <  1:15676456‑M1/19‑4 (MQ=255)
             aacatatgcggatattTCAGCGggtttttttttcc                       <  1:16074179‑M1/19‑3 (MQ=255)
              tCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGt                      >  1:19837705/1‑35 (MQ=255)
               cAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTc                     <  1:4760348/35‑1 (MQ=255)
                tagccggtggctgcgtcgGGGTTTTTTTTTggttt                    <  1:4555264‑M1/17‑3 (MQ=255)
                aaaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCt                    >  1:8035204/1‑35 (MQ=255)
                aaaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCt                    <  1:18437000/35‑1 (MQ=255)
                aaaaCCCGCTTAATCAGAGGGTTTTTTTTTGGTCt                    <  1:7730201/35‑1 (MQ=255)
                 aaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCtt                   >  1:3089471/1‑35 (MQ=255)
                 aaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCtt                   >  1:13765424/1‑35 (MQ=255)
                  aaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCttt                  <  1:901301/35‑1 (MQ=255)
                  aaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCttt                  <  1:5196765/35‑1 (MQ=255)
                  aaCCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTa                 <  1:12696475/35‑1 (MQ=38)
                   aCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTa                 >  1:11043868/1‑35 (MQ=255)
                   aCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTa                 <  1:8309499/35‑1 (MQ=255)
                   aCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTa                 <  1:18717358/35‑1 (MQ=255)
                    cccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAg                >  1:18881042/1‑35 (MQ=255)
                     ccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgt               <  1:17693314/35‑1 (MQ=255)
                     ccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgt               <  1:2103051/35‑1 (MQ=255)
                      cGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgtg              >  1:7532465/1‑35 (MQ=255)
                        cTTAATCAGCGGGTTTTTTTTTGGTCTTTAGtgtg            <  1:20340953/35‑1 (MQ=255)
                        cTTAATCAGCGGGTTTTTTTTTGGTCTTTAGtgtg            >  1:8179095/1‑35 (MQ=255)
                        cTTAATCAGCGGGTTTTTTTTTGGTCTTTAGtgtg            <  1:20056766/35‑1 (MQ=255)
                        cTTAATCAGCGGGTTTTTTTTTGGTCTTTAGtgtg            >  1:18821938/1‑35 (MQ=255)
                        cTTAATCAGCGGGCTTTTTTTTGGTCTTTAGtgtg            >  1:977164/1‑35 (MQ=255)
                          tAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCg          <  1:10037311/35‑1 (MQ=255)
                          tAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCg          >  1:7883213/1‑35 (MQ=255)
                          tAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCg          <  1:14482637/35‑1 (MQ=255)
                          tAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCg          >  1:17295034/1‑35 (MQ=255)
                           aaTCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCgg         >  1:9878401/1‑35 (MQ=255)
                             TCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGtt       <  1:7757079‑M1/35‑1 (MQ=255)
                             TCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGtt       <  1:883206‑M1/35‑1 (MQ=255)
                             TCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGtt       <  1:18801464‑M1/35‑1 (MQ=255)
                              CAGCTGGTTTTTTTTTGGTCTTTAGTGTGCGGTTg      <  1:13502535‑M1/35‑1 (MQ=255)
                              CAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTg      <  1:6957270‑M1/35‑1 (MQ=255)
                               aGCGGGTTCTTTTTCGGTCTTTAGTGTGCGGTTGa     <  1:3135069/35‑1 (MQ=37)
                               AGCGTGTTTTTTTTTGGTCTTTAGTGTGCGGTTGa     <  1:3593459‑M1/35‑1 (MQ=255)
                               AGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGa     <  1:6472917‑M1/35‑1 (MQ=255)
                                 CGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAgg   <  1:11500702‑M1/35‑1 (MQ=255)
                                 CGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAgg   <  1:20175862‑M1/35‑1 (MQ=255)
                                  GGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGc  >  1:18597881‑M1/1‑35 (MQ=255)
                                  |                                  
ACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGC  >  REL606/640086‑640154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.