New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 583407 | 44 (0.430) | 12 (0.160) | 3/34 | NT | 15.9% | coding (546/1377 nt) | pheP | phenylalanine transporter |
? | REL606 | 3882315 = | 96 (1.320) | coding (103/816 nt) | atpB | F0F1 ATP synthase subunit A |
TGCTGGCGATCATCGGTATGATCGGCTTTGGCCTGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/583367‑583407 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggctgGGGGGTTTTGTG > REL606/3882315‑3882326 TGCTGGCGATCATCGGTATGATCGGCTTTGGCCTG < 1:5508703/35‑1 GCTGGCGATCATCGGTATGATCGGCTTTGGCCTGT < 1:148359/35‑1 GCTGGCGATCATCGGTATGATCGGCTTTGGCCTGT < 1:16162434/35‑1 CTGGCGATCATCGGTATGATCGGCTTTGGCCTGTG < 1:7946696/35‑1 CTGGCGATCATCGGTATGATCGGCTTTGGCCTGTG < 1:3679240/35‑1 TGGCGATCATCGGTATGATCGGCTTTGGCCTGTGG < 1:11862697/35‑1 TGGCGATCATCGGTATGATCGGCTTTGGCCTGTGG < 1:19999517/35‑1 tCGATCATCGGTATGATCGGCTTTGGCCTGTGGCT < 1:17045083/34‑1 GCGATCATCGGTATGATCGGCTTTTGCCTGTGGCT > 1:17999487/1‑35 CGATCATCGGTATGATCGGCTTTGGCCTGTGGCTG < 1:7977722/35‑1 CGATCATCGGTATGATCGGCTTTGGCCTGTGGCTG < 1:13238033/35‑1 GATCATCGGTATGATCGGCTTTGGCCTGGGGCTGG > 1:10957634/1‑35 TCATCGGTATGATCGGCTTTGGCCTGTGGCTGatg < 1:4772216/35‑4 TCATCGGTATGATCGGCTTTGGCCTGTGGCTGGGG > 1:11887501/1‑35 TCATCGGTATGATCGGCTTTGGCCTGTGGCTGGGG > 1:594318/1‑35 CGGTATGATCGGCTTTGGCCTGTGGCTGGGGGGTT > 1:9099797/1‑35 GGTATGATCGGCTTTGGCCTGTGGCTGGGGGTTTT > 1:19584172/1‑35 GGTATGATCGGCTTTGGCCTGTGGCTGGGGGTTTT > 1:17608560/1‑35 GGTATGATCGGCTTTGGCCTGTGGCTGGGGGTTTT > 1:13775473/1‑35 GTATGATCGGCTTTGGCCTGTGGCTGGGGGGTTTT > 1:6758062/1‑35 GTATGATCGGCTTTGGCCTGTGGCTGGGGGGTTTT > 1:10356438/1‑35 TATGATCGGCTTTGGCCTGTGGCTGGGGGGTTTTt > 1:14595613/1‑34 TATGATCGGCTTTGGCCTGTGGCTGGGGGGTTTTt > 1:1368012/1‑34 TATGATCGGCTTTGGCCTGTGGCTGGGGGGTTTTt > 1:10956825/1‑34 ATGATCGGCTTTGGCCTGTGGCTGGGGGGTTTTtg > 1:11917454/1‑33 TGATCGGCTTTGGCCTGTGGCTGGGGGGTTTTttt > 1:19733766/1‑32 TGATCGGCTTTGGCCTGTGGCTGGGGGGTTTTttt > 1:19089739/1‑32 TGCTGGCGATCATCGGTATGATCGGCTTTGGCCTGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/583367‑583407 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggctgGGGGGTTTTGTG > REL606/3882315‑3882326 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |