New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 326204 =101 (0.980)10 (0.130) 4/36 NT 14.1% coding (849/1887 nt) prpE predicted propionyl‑CoA synthetase with ATPase domain
?REL606 = 4116137 46 (0.600)intergenic (+15/‑78) katG/yijE catalase/hydroperoxidase HPI(I)/predicted permease

Only 100 of 133 total aligned reads displayed.

ACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTA  >  REL606/4116103‑4116171
                                  |                                  
aCCGTTTCGACCTGCTGTAATCTGACCCCGTTCAg                                    <  1:15485607/35‑1 (MQ=255)
aCCGTTTCGACCTGCTGTAATCTGACCCCGTTCAg                                    <  1:8439524/35‑1 (MQ=255)
aCCGTTTCGACCTGCTGTAATCTGACCCCGTTCAg                                    >  1:18047326/1‑35 (MQ=255)
aCCGTTTCGACCTGCTGTAATCTGACCCCGTTCAg                                    <  1:2338567/35‑1 (MQ=255)
 ccGTTTCGACCTGCTGTAATCTGACCCCGTTCAGc                                   >  1:10384505‑M2/1‑34 (MQ=255)
 ccGTTTCGACCTGCTGTAATCTGACCCCGTTCAGc                                   >  1:13861614‑M2/1‑34 (MQ=255)
  cGTTTCGACCTGCTGTAATCTGACCCCGTTCCGcg                                  <  1:2461309‑M2/35‑3 (MQ=255)
  cGTTTCGACCTGCTGTAATCTGACCCCGTTCAGcg                                  <  1:19690516‑M2/35‑3 (MQ=255)
  cGTTTCGACCTGCTGTAATCTGACCCCGTTCAGcg                                  >  1:10796522‑M2/1‑33 (MQ=255)
  cGTTTCGACCTGCTGTAATCTGACCCCGTTCAGcg                                  >  1:2298412‑M2/1‑33 (MQ=255)
  cGTTTCGACCTGCTGTAATCTGACCCCGTTCAGcg                                  >  1:1232172‑M2/1‑33 (MQ=255)
   gTTTCGACCTGCTGTAATCTGACCCCGTTCAGcgg                                 >  1:19298448‑M2/1‑32 (MQ=255)
   gTTTCGACCTGCTGTAATCTGACCCCGTTCAGcgg                                 <  1:13272372‑M2/35‑4 (MQ=255)
   gTTTCGACCTGCTGTAATCTGACCCCGTTCAGcgg                                 >  1:13955956‑M2/1‑32 (MQ=255)
   gTTTCGACCTGCTGTAATCTGACCCCGTTCAGcgg                                 >  1:17472734‑M2/1‑32 (MQ=255)
   gTTTCGACCTGCTGTAATCTGACCCCGTTCAGcgg                                 >  1:1673714‑M2/1‑32 (MQ=255)
   gTTTCGACCTGCTGTAATCTGACCCCGTTCAGcgg                                 <  1:10103973‑M2/35‑4 (MQ=255)
   gTTTCGACCTGCTGGAATCTGACCCCGGTCCGCgg                                 >  1:18288505/1‑35 (MQ=25)
   gTTTCGACATGCTGTAATCTGACCCCGTTCAGcgg                                 >  1:9887167‑M2/1‑32 (MQ=255)
   gTTTCGAACTGCTGTAATCTGACCCCGTTCAGcgg                                 >  1:4224071‑M2/1‑32 (MQ=255)
    tttCGACCTGCTGTAATCTGACCCCGTTCAGcggc                                >  1:6182935‑M2/1‑31 (MQ=255)
    tttCGACCTGCTGTAATCTGACCCCGTTCAGcggc                                >  1:13663855‑M2/1‑31 (MQ=255)
    tttCGACCTGCTGTAATCTGACCCCGTTCAGcggc                                <  1:13007314‑M2/35‑5 (MQ=255)
     ttCGACCTGCTGTAATCTGACCCCGTTCAGcggct                               >  1:12756924‑M2/1‑30 (MQ=255)
      tCGACCTGCTGTAATCTGACCCCGTTCAGcggctg                              >  1:12876655‑M2/1‑29 (MQ=255)
      tCGACCTGCTGTAATCTGACCCCGTTCAGcggctg                              >  1:3308616‑M2/1‑29 (MQ=255)
       cGACCTGCTGTAATCTGACCCCGTTCAGcggctgg                             <  1:13824661‑M2/35‑8 (MQ=255)
       cGACCTGCTGTAATCTGACCCCGTTCAGCGgctgc                             <  1:18202737/35‑1 (MQ=255)
       cGACCTGCTGTAATCTGACCCCGTTCAGCGgctgc                             <  1:10398747/35‑1 (MQ=255)
       cGACCTGCTGTAATCTGACCCCGTTCAGCGgctgc                             <  1:16643569/35‑1 (MQ=255)
        gACCTGCTGTAATCTGACCCCGTTCAGcgggtggg                            <  1:8882106‑M2/35‑9 (MQ=255)
        gACCTGCTGTAATCTGACCCCGTTCAGcggctggg                            <  1:4978393‑M2/35‑9 (MQ=255)
        gACCTGCTGTAATCTGACCCCGTTCAGcggctggg                            <  1:7143198‑M2/35‑9 (MQ=255)
        gACCTGCTGTAATCTGACCCCGTTCAGcggctggg                            <  1:9950333‑M2/35‑9 (MQ=255)
        gACCTGCTGTAATCTGACCCCGTTCAGCGgctgct                            <  1:17476266/35‑1 (MQ=255)
         aCCTTCTGTAATCTGACCCCGTTCAGcggctgggt                           <  1:6894330‑M2/35‑10 (MQ=255)
         aCCTGCTGTAATCTGACCCCGTTCAGCGGCtgctt                           <  1:7338395/35‑1 (MQ=255)
         aCCTGCTGTAATCTGACCCCGTTCAGCGGCtgctt                           <  1:11446635/35‑1 (MQ=255)
         aCCTGCTGTAATCTGACCCCGTTCAGCGGCtgctt                           <  1:13479288/35‑1 (MQ=255)
          ccTGCTGTAATCTGACCCCGTTCAGcggctgggtg                          <  1:12151299‑M2/35‑11 (MQ=255)
          ccTGCTGTAATCTGACCCCGTTCAGcggctgggcg                          <  1:16580461‑M2/35‑11 (MQ=255)
          ccTGCTGTAATCTGACCCCGTTCAGCGGCtgcttg                          <  1:8349043/35‑1 (MQ=255)
          ccTGCTGTAATCTGACCCCGTTCAGCGGCtgcttg                          <  1:13430212/35‑1 (MQ=255)
           ctgctgTAATCTGACCCCGTTCAGcggctgggtgg                         <  1:7390247‑M2/35‑12 (MQ=255)
           ctgctgTAATCTGACCCCGTTCAGcggctgggtgg                         <  1:19247344‑M2/35‑12 (MQ=255)
           ctgctgTAATCTGACCCCGTTCAGcggctgggtgg                         <  1:10113398‑M2/35‑12 (MQ=255)
           ctgctgTAATCTGACCCCGTTCAGCGGCtgcttgc                         <  1:11295681/35‑1 (MQ=255)
           ctgctgTAATCTGACCCCGTTCAGCGGCtgcttgc                         <  1:16833770/35‑1 (MQ=255)
           ctgctgTAATCTGACCCCGTTCAGCCGCtgcttgc                         >  1:5875112/1‑35 (MQ=255)
            tgctgTAATCTGACCCCGTTCAGcggctgggtggt                        <  1:5690320‑M2/35‑13 (MQ=255)
            tgctgTAATCTGACCCCGTTCAGcggctgggtgct                        <  1:14322753‑M2/35‑13 (MQ=255)
            tgctgTAATCTGACCCCGTTCAGCGGCtgcttgct                        >  1:13164999/1‑35 (MQ=255)
            tgctgTAATCTGACCCCGTTCAGCGGCtgcttgct                        <  1:2097528/35‑1 (MQ=255)
            tgctgTAATCTGACCCCGTTCAGCGGCtgcttgct                        <  1:11848166/35‑1 (MQ=255)
             gctgTAATCTGACCCCGTTCAGcggctggggggtg                       <  1:13349467‑M2/35‑14 (MQ=255)
             gctgTAATCTGACCCCGTTCAGCGGCTGCTTGCTg                       <  1:7102553/35‑1 (MQ=255)
             gctgTAATCTGACCCCGTTCAGCGGCTGCTTGCTg                       <  1:16797637/35‑1 (MQ=255)
             gctgTAATCTGACCCCGTTCAGCGGCTGCTTGCTg                       <  1:6319234/35‑1 (MQ=255)
              ctgTAATCTGACCCCGTTCAGcggctgggtggtgg                      <  1:6375029‑M2/35‑15 (MQ=255)
              ctgTAATCTGACCCCGTTCAGcggctgggtggcgg                      <  1:10739194‑M2/35‑15 (MQ=255)
              ctgTAATCTGACCCCGTTCAGCGGCTGCTTGCTgg                      <  1:19771365/35‑1 (MQ=255)
              ctgTAATCTGACCCCGTTCAGCGGCTGCTTGCTgg                      <  1:4469168/35‑1 (MQ=255)
              ctgTAATCTGACCCCGTTCAGCGGCTGCTTGCTgg                      <  1:12525616/35‑1 (MQ=255)
               tgTAATCTGACCCCGTTCAGcggctgggtggtggt                     <  1:16142710‑M2/35‑16 (MQ=255)
               tgTAATCTGACCCCGTTCAGcggctgggtggtggg                     <  1:2747014‑M2/35‑16 (MQ=255)
                ttAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCa                    <  1:2472693/34‑1 (MQ=255)
                gTAATCTGACCCCGTTCAGcggctgggtgctgggc                    <  1:14783956‑M2/35‑17 (MQ=255)
                gTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCa                    <  1:431150/35‑1 (MQ=255)
                gTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCa                    <  1:8797303/35‑1 (MQ=255)
                 tAATCTGACCCCGTTCAGcggctgggtggtgggag                   <  1:11989631‑M2/35‑18 (MQ=255)
                 tAATCTGACCCCGTTCAGCGGCTGGGTGCTGGGAg                   >  1:9708261/1‑35 (MQ=25)
                  aaTGTGACCCCGTTCAGCGGCTGCTTGCTGGCAGt                  <  1:4750436/35‑1 (MQ=255)
                  aaTCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGt                  <  1:12427324/35‑1 (MQ=255)
                  aaTCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGt                  <  1:9409035/35‑1 (MQ=255)
                  aaTCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGt                  <  1:2084986/35‑1 (MQ=255)
                   aTCTGACCCCGTTCAGcggctgggtggtggggggg                 <  1:19657853‑M2/35‑20 (MQ=255)
                   aTCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTc                 <  1:11633695/35‑1 (MQ=255)
                   aTCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTc                 <  1:16460762/35‑1 (MQ=255)
                   aTCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTc                 <  1:15732141/35‑1 (MQ=255)
                   aTCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTc                 <  1:17468564/35‑1 (MQ=255)
                   aTCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTc                 <  1:17977357/35‑1 (MQ=255)
                   aTCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTc                 <  1:13114597/35‑1 (MQ=255)
                   aTCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTc                 <  1:1958540/35‑1 (MQ=255)
                    tCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCg                <  1:539920/35‑1 (MQ=255)
                    tCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCg                <  1:8383901/35‑1 (MQ=255)
                     cTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGc               <  1:3231891/35‑1 (MQ=255)
                     cTGACCCAGTTCAGCGGCTGCTTGCTGGCAGTGGc               <  1:2375526/35‑1 (MQ=25)
                      tGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCt              <  1:19567269/35‑1 (MQ=255)
                      tGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCt              <  1:20314116/35‑1 (MQ=255)
                      tGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCt              <  1:4943451/35‑1 (MQ=255)
                       gACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTg             <  1:7827149/35‑1 (MQ=255)
                        aCCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGa            <  1:18125422/35‑1 (MQ=255)
                        aCCCAGTTCAGCGGCTGCTTGCTGGCAGTCGCTGa            <  1:6355328/35‑1 (MQ=255)
                         ccccGTTCAGCGGCTGCTTGCTGGCAGTCGCTGaa           <  1:19064542/35‑1 (MQ=255)
                          cccGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAAc          <  1:19564383/35‑1 (MQ=255)
                            cGTGCAGCGGCTGCTTGCTGCCAGTCGCTGAACGt        <  1:18284057/35‑1 (MQ=25)
                               tCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCt     <  1:10869941/35‑1 (MQ=255)
                                 aGCGGCTGCTTGCTGGCAGTCGCTGACCGTTCttt   <  1:4160446/35‑1 (MQ=255)
                                 aGCGGCTGCTTGCTGGCAGTCGCTGACCGTTCttt   <  1:4769304/35‑1 (MQ=255)
                                  gCGGCTGCTTGCTGGCAGTCGCTGACCGTTCTTTa  <  1:508108/35‑1 (MQ=255)
                                  |                                  
ACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTA  >  REL606/4116103‑4116171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.