New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 575058 =51 (0.500)11 (0.140) 3/38 NT 9.8% coding (616/1449 nt) cusS sensory histidine kinase in two‑component regulatory system with CusR, senses copper ions
?REL606 = 2762587 162 (1.990)coding (1028/1140 nt) nlpD predicted outer membrane lipoprotein

TAATCAGCATCCTGATCGTCTTTATCGTACTGTTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/575096‑575058
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC  <  REL606/2762587‑2762554
                                                                         
TAATCAGCATCCTGATCGTCTTTATCGTACTGTTG                                        >  1:18303713/1‑35
TAATCAGCATCCTGATCGTCTTTATCGTACTGTTG                                        >  1:2167441/1‑35
TAATCAGCATCCTGATCGTCTTTATCGTACTGTTG                                        >  1:1770531/1‑35
TAATCAGCATCCTGATCGTCTTTATCGTACTGTTG                                        >  1:8789327/1‑35
TAATCAGCATCCTGATCGTCTTTATCGTACTGTTG                                        >  1:6508299/1‑35
 AATCAGCATCCTGATCGTCTTTATCGTACTGTTGG                                       >  1:8519679/1‑35
 AATCAGCATCCTGATCGTCTTTATCGTACTGTTGG                                       >  1:12752906/1‑35
 AATCAGCATCCTGATCGTCTTTATCGTACTGTTGG                                       <  1:5483355/35‑1
  ATCAGCATCCTGATCGTCTTTATCGTACTGTTGGC                                      <  1:5254250/35‑1
  ATCAGCATCCTGATCGTCTTTATCGTACTGTTGGC                                      >  1:11571685/1‑35
  ATCAGCATCCTGATCGTCTTTATCGTACTGTTGGC                                      <  1:7851160/35‑1
  ATCAGCATCCTGATCGTCTTTATCGTACTGTTGGC                                      <  1:13145212/35‑1
   TCAGCATCCTGATCGTCTTTATCGTACTGTTGGCG                                     <  1:3641930/35‑1
   TCAGCATCCTGATCGTCTTTATCGTACTGTTGGCG                                     >  1:460355/1‑35
   TCAGCATCCTGATCGTCTTTATCGTACTGTTGGCG                                     >  1:13667187/1‑35
   TCAGCATCCTGATCGTCTTTATCGTACTGTTGGCG                                     >  1:7301082/1‑35
   TCAGCATCCTGATCGTCTTTATCGTACTGTTGGCG                                     <  1:12808806/35‑1
   TCAGCATCCTGATCGTCTTTATCGTACTGTTGGCG                                     <  1:12613817/35‑1
    CAGCATCCTGATCGTCTTTATCGTACTGTTTGCGG                                    >  1:18863688/1‑35
    CAGCATCCTGATCGTCTTTATCGTACTGTTGGCGG                                    <  1:2930767/35‑1
    CAGCATCCTGATCGTCTTTATCGTACTGTTGGCGG                                    <  1:16252893/35‑1
    CAGCATCCTGATCGTCTTTATCGTACTGTTGGCGG                                    >  1:19894776/1‑35
     AGCATCCTGATCGTCTTTATCGTACTGTTGGCGGG                                   >  1:9322037/1‑35
     AGCATCCTGATCGTCTTTATCGTACTGTTGGCGGG                                   >  1:17951353/1‑35
     AGCATCCTGATCGTCTTTATCGTACTGTTGGCGGG                                   >  1:1004350/1‑35
     AGCATCCTGATCGTCTTTATCGTACTGTTGGCGGG                                   >  1:10030053/1‑35
      GCATCCTGATCGTCTTTATCGTACTGTTGGCGGGG                                  >  1:4807852/1‑35
        ATCCTGATCGTCTTTATCGTACTGTTGGCGGGaga                                >  1:19974404/1‑32
        ATCCTGATCGTCTTTATCGTACTGTTGGCGGGaaa                                >  1:15008832/1‑32
        ATCCTGATCGTCTTTATCGTACTGTTGGCGGGGCA                                >  1:9151553/1‑35
        ATCCTGATCGTCTTTATCGTACTGTTGGCGGGGCA                                >  1:10272184/1‑35
         TCCTGATCGTCTTTATCGTACTGTTGGCGGGGgat                               >  1:15367438/1‑32
         TCCTGATCGTCTTTATCGTACTGTTGGCGGGGAAA                               >  1:9728578/1‑35
          CCTGATCGTCTTTATCGTACTGTTGGCGGGGGAAA                              >  1:8934465/1‑35
          CCTGATCGTCTTTATCGTACTGTTGGCGGGGCAAA                              >  1:10491564/1‑35
            TGATCGTCTTTATCGTACTGTTGGCGGGGCATAAA                            >  1:6239564/1‑35
            TGATCGTCTTTATCGTACTGTTGGCGGGGCATAAA                            >  1:13263930/1‑35
            TGATCGTCTTTATCGTACTGTTGGCGGGGCATAAA                            >  1:19076177/1‑35
            TGATCGTCTTTATCGTACTGTTGGCGGGGCAAAAA                            >  1:7617607/1‑35
            TGATCGTCTTTATCGTACTGTTGGCGGGGAAAAAA                            >  1:13429517/1‑35
             GATCGTCTTTATCGTACTGTTGGCGGGGCATAAAA                           >  1:8035776/1‑35
             GATCGTCTTTATCGTACTGTTGGCGGGGCAAAAAA                           >  1:3474370/1‑35
              ATCGTCTTTATCGTACTGTTGGCGGGGCATAAAAg                          >  1:4252622/1‑34
              ATCGTCTTTATCGTACTGTTGGCGGGGAAAAAAAg                          >  1:13037761/1‑34
                                  GGCGGGGCAAAAAATAGCAACCATGGGTAGCACCG      >  1:5710627/1‑35
                                  GGCGGGGCAAAAAATAGCAACCATGGGTAGCACCG      <  1:6616701/35‑1
                                  GGCGGGGCAAAAAATAGCAACCATGGGTAGCACCG      <  1:950949/35‑1
                                  GGCGGGGCAAAAAATAGCAACCATGGGTAGCACCG      <  1:7741533/35‑1
                                   gcaGGGCAAAAAATAGCAACCATGGGTAGCACCGG     <  1:1958383/32‑1
                                   GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG     <  1:3751828/35‑1
                                   GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG     <  1:3677138/35‑1
                                   GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG     <  1:19350300/35‑1
                                   GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG     >  1:12546184/1‑35
                                   GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG     >  1:19621687/1‑35
                                   GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG     >  1:13546465/1‑35
                                   GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG     <  1:10809827/35‑1
                                    CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA    >  1:10081221/1‑35
                                    CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA    >  1:7286111/1‑35
                                    CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA    >  1:8572959/1‑35
                                    CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA    <  1:9467882/35‑1
                                    CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA    >  1:14313798/1‑35
                                    CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA    <  1:4747325/35‑1
                                    CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA    >  1:1477336/1‑35
                                    CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA    >  1:19884782/1‑35
                                    CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA    <  1:20087548/35‑1
                                     GGGGCAAAAAATAGCAACCATGTGTAGCACCGGAA   >  1:10813651/1‑35
                                     GGGGCAAAAAATAGCAACCATGGGTAGCACCGGAA   >  1:6071053/1‑35
                                     GGGGCAAAAAATAGCAACCATGGGTAGCACCGGAA   >  1:211843/1‑35
                                     GGGGCAAAAAATAGCAACCATGGGTAGCACCGGAA   >  1:18148696/1‑35
                                      GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC  >  1:19672488/1‑35
                                      GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC  <  1:920820/35‑1
                                      GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC  <  1:2183309/35‑1
                                      GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC  >  1:1785127/1‑35
                                      GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC  >  1:3342231/1‑35
                                      GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC  <  1:3629224/35‑1
                                      GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC  <  1:15222725/35‑1
                                      GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC  <  1:3842055/35‑1
                                      GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC  <  1:4001940/35‑1
                                      GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC  >  1:14532419/1‑35
                                                                         
TAATCAGCATCCTGATCGTCTTTATCGTACTGTTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/575096‑575058
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC  <  REL606/2762587‑2762554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.