Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,648,342 IS1 (–) +9 bp 28.2% intergenic (+195/‑221) ynfM → / → asr predicted transporter/acid shock protein precursor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1323488NA (NA)22 (0.210) 18/48 NT 26.6% noncoding (768/768 nt) IS1 repeat region
?REL606 = 1648350 38 (0.590)intergenic (+203/‑221) ynfM/asr predicted transporter/acid shock protein precursor
* ? REL606 1648342 =36 (0.600)7 (0.090) 6/36 NT 13.1% intergenic (+195/‑229) ynfM/asr predicted transporter/acid shock protein precursor
?REL606 = 3024712 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 217 total aligned reads displayed.

TTATTACTGATGCGCAGTTATTCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCAAGACTACTA  >  REL606/1648316‑1648384
                                  |                                  
ttattaCTGATGCGCAGTTATTCTACCGCTTTGTa                                    >  1:5922325/1‑35 (MQ=255)
ttattaCTGATGCGCAGTTATTCTACCGCTTTGTa                                    <  1:11212721/35‑1 (MQ=255)
ttattaCTGATGCGCAGTTATTCTACCGCTTTGTa                                    >  1:9599141/1‑35 (MQ=255)
ttattaCTGATGCGCAGTTATTCTACCGCTTTGTa                                    <  1:14389053/35‑1 (MQ=255)
 tattaCTGATGCGCAGTTATTCTACCGCTTTGTaa                                   >  1:8204674/1‑35 (MQ=255)
 tattaCTGATGCGCAGTTATTCTACCGCTTTGTaa                                   <  1:16315751/35‑1 (MQ=255)
  attaCTGATGCGCAGTTATTCTACCGCTTTGTAag                                  <  1:19066419/35‑1 (MQ=255)
  attaCTGATGCGCAGTTATTCTACCGCTTTGTAag                                  <  1:9694661/35‑1 (MQ=255)
   ttaCTGATGCGCAGTTATTCTACCGCTTTGTAagt                                 <  1:6201912/35‑1 (MQ=255)
   ttaCTGATGCGCAGTTATTCTACCGCTTTGTAagt                                 >  1:18033844/1‑35 (MQ=255)
    taCTGATGCGCAGTTATTCTACCGCTTTGTAagta                                >  1:5322778/1‑35 (MQ=255)
     aCTGATGCGCAGTTATTCTACCGCTTTGTAagtag                               <  1:17413499/35‑1 (MQ=255)
     aCTGATGCGCAGTTATTCTACCGCTTTGTAagtag                               >  1:6410731/1‑35 (MQ=255)
     aCTGATGCGCAGTTATTCTACCGCTCTGTAagtag                               >  1:14803576/1‑35 (MQ=255)
      cTGATGCGCAGTTATTCTACCGCTTTGTAggtaat                              >  1:2176260‑M2/1‑29 (MQ=255)
      cTGATGCGCAGTTATTCTACCGCTTTGTAagtagt                              <  1:7908692/35‑1 (MQ=255)
        gATGCGCAGTTATTCTACCGCTTTGTAggtaatga                            <  1:17250351‑M2/35‑9 (MQ=255)
        gATGCGCAGTTATTATACCGCTTTGTAAGTAGTaa                            <  1:10543861/35‑1 (MQ=255)
         aTGCGCAGTTATTCTACCGCTTTGTAggtaatgac                           <  1:18626996‑M2/35‑10 (MQ=255)
         aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa                           <  1:14493077/35‑1 (MQ=255)
         aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa                           <  1:10998170/35‑1 (MQ=255)
         aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa                           >  1:12134625/1‑35 (MQ=255)
         aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa                           >  1:11462002/1‑35 (MQ=255)
         aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa                           >  1:9243855/1‑35 (MQ=255)
           gcgcAGTTATTCTACCGCTTTGTAAGTAGTAAAAt                         >  1:16541177/1‑35 (MQ=255)
           gcgcAGTTATTCTACCGCTTTGTAAGTAGTAAAAt                         <  1:13817037/35‑1 (MQ=255)
           gcgcAGTTATTCTACCGCTTTGTAAGTAGTAAAAt                         <  1:11413052/35‑1 (MQ=255)
            cgcAGTTATTCTACCGCTTTGTAggtaatgactcc                        >  1:6917878‑M2/1‑23 (MQ=255)
            cgcAGTTATTCTACCGCTTTGTAAGTAGTAAAATa                        >  1:19453867/1‑35 (MQ=255)
             gcAGTTATTCTACCGCTTTGTAAGTAGTAAAATAg                       <  1:15597593/35‑1 (MQ=255)
              cAGTTATTCTACCGCTTTGTAggtaatgactccaa                      <  1:694466‑M2/35‑15 (MQ=255)
              cAGTTATTCTACCGCTTTGTAAGTAGTAAAATAGt                      >  1:10079022/1‑35 (MQ=255)
               aGTTATTCTACCGCTTTGTAAGTAGTAAAATAGtt                     >  1:2523236/1‑35 (MQ=255)
                cagcatcaccCGCTTTGTAAGTAGTAAAATAGTTa                    <  1:4664419‑M1/25‑1 (MQ=255)
                 agcatcaccCGCTTTGTAAGTAGTAAAATAGTTaa                   <  1:16133894‑M1/26‑1 (MQ=255)
                  tATTCTACCGCTTTGTAAGTAGTAAAATAGTTAAc                  <  1:17183952/35‑1 (MQ=255)
                  tATTCTACCGCTTTGTAAGTAGTAAAATAGTTAAc                  <  1:7258380/35‑1 (MQ=255)
                  tATTCTACCGCTTTGTAAGTAGTAAAATAGTTAAc                  <  1:6617254/35‑1 (MQ=255)
                   aTTCTACCGCTTTGTGggtaatgactccaacttat                 <  1:13404269‑M2/35‑20 (MQ=255)
                   aTTCTACCGCTTTGTAggtaatgactccaacttat                 <  1:4433953‑M2/35‑20 (MQ=255)
                   aTTCTACCGCTTTGTAAGTAGTAAAATAGTTAAcc                 <  1:18999621/35‑1 (MQ=255)
                    ttCTACCGCTTTGTAggtaatgactccaacttatt                <  1:5415439‑M2/35‑21 (MQ=255)
                     tcaccCGCTTTGTAAGTAGTAAAATAGTTAACCCg               >  1:8561479‑M1/6‑35 (MQ=255)
                     tCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCg               <  1:12980634/35‑1 (MQ=255)
                      cTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGa              >  1:10164890/1‑35 (MQ=255)
                      cTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGa              <  1:11872667/35‑1 (MQ=255)
                      cTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGa              >  1:3355789/1‑35 (MQ=255)
                       tACCGCTTTGTAAGTAGTAAAATAGTTAACCCGAt             >  1:18244414/1‑35 (MQ=255)
                       tACCGCTTTGTAAGTAGTAAAATAGTTAACCCGAt             >  1:1502277/1‑35 (MQ=255)
                       tACCGCTTTGTAAGTAGTAAAATAGTTAACCCGAt             <  1:323936/35‑1 (MQ=255)
                        aCCGCTTTGTAAGTAGTAAAATAGTTAACCCGATc            >  1:1061415/1‑35 (MQ=255)
                        aCCGCTTTGTAAGTAGTAAAATAGTTAACCCGATc            >  1:9863227/1‑35 (MQ=255)
                         cCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCa           <  1:7931807‑M1/34‑1 (MQ=255)
                          CGCTTTGTAAGTAGTAAAATAGTTAACCCGATCaa          <  1:10295844‑M1/35‑1 (MQ=255)
                           gCTTTGTAggtaatgactccaacttattgatagtg         <  1:6341290‑M2/35‑28 (MQ=255)
                            cTTTGTAggtaatgactccaacttattgatagtgt        <  1:4271427‑M2/35‑29 (MQ=255)
                            cTTTGTAggtaatgactccaacttattgatagtgt        >  1:894323‑M2/1‑7 (MQ=255)
                            CTTTGTAAGTAGTAAAATAGTTAACCCGATCAAGa        >  1:18925977‑M1/1‑35 (MQ=255)
                             TTTGTAAGTAGTAAAATAGTTAACCCGATCAAGAc       >  1:2580873‑M1/1‑35 (MQ=255)
                             TTTGTAAGTAGTAAAATAGTTAACCCGATCAAGAc       <  1:8885596‑M1/35‑1 (MQ=255)
                              ttGTAggtaatgactccaacttattgatagtgttt      <  1:7850476‑M2/35‑31 (MQ=255)
                               tGTAggtaatgactccaacttattgatagtgtttt     >  1:15507298‑M2/1‑4 (MQ=255)
                               tGTAggtaatgactccaacttattgatagtgtttt     <  1:19839231‑M2/35‑32 (MQ=255)
                               tGTAAGTAGTAAAATAGTTAACCCGATCAAGacta     <  1:17115881/35‑1 (MQ=255)
                               tGTAAGTAGTAAAATAGTTAACCCGATCAAGacta     <  1:2233632/35‑1 (MQ=255)
                                gTAggtaatgactccaacttattgatagtgtttta    <  1:3523888‑M2/35‑33 (MQ=255)
                                gTAggtaatgactccaacttattgatagtgtttta    <  1:5801848‑M2/35‑33 (MQ=255)
                                gTAggtaatgactccaacttattgatagtgtttta    >  1:19263525‑M2/1‑3 (MQ=255)
                                gTAggtaatgactcaaacttattgatagtgtttta    >  1:3015911‑M2/1‑3 (MQ=255)
                                 tAggtaatgactccaacttattgatagtgttttat   >  1:14544647‑M2/1‑2 (MQ=255)
                                 tAggtaatgactccaacttattgatagtgttttat   >  1:779712‑M2/1‑2 (MQ=255)
                                 tAggtaatgactccaacttattgatagtgttttat   <  1:16928929‑M2/35‑34 (MQ=255)
                                 tAggtaatgactccaacttattgatagtgttttat   <  1:19612417‑M2/35‑34 (MQ=255)
                                 tAggtaatgactccaacttattgatagtgttttat   >  1:11262055‑M2/1‑2 (MQ=255)
                                 tAggtaatgactccaacttattgatagtgttttat   >  1:8804736‑M2/1‑2 (MQ=255)
                                 tAggtaatgactcaaacttattgatagtgttttat   >  1:15823261‑M2/1‑2 (MQ=255)
                                 tAAGTAGTAAAATAGTTAACCCGATCAAGactact   <  1:20430203/35‑1 (MQ=255)
                                 tAAGTAGTAAAATAGTTAACCCGATCAAGactact   <  1:19855594/35‑1 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  <  1:9907913‑M2/35‑35 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  >  1:12735630‑M2/1‑1 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  <  1:14078689‑M2/35‑35 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  <  1:14612108‑M2/35‑35 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  >  1:9434045‑M2/1‑1 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  <  1:15001548‑M2/35‑35 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  >  1:15313148‑M2/1‑1 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  <  1:15920930‑M2/35‑35 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  >  1:17800940‑M2/1‑1 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  >  1:18021606‑M2/1‑1 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  <  1:8424231‑M2/35‑35 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  <  1:18358241‑M2/35‑35 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  >  1:19981360‑M2/1‑1 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  <  1:7703726‑M2/35‑35 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  <  1:7442237‑M2/35‑35 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  >  1:285385‑M2/1‑1 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  >  1:7168882‑M2/1‑1 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  >  1:3439584‑M2/1‑1 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  <  1:4112570‑M2/35‑35 (MQ=255)
                                  aggtaatgactccaacttattgatagtgttttatg  <  1:493158‑M2/35‑35 (MQ=255)
                                  aggtaatgactcaaacttattgatagtgttttatg  >  1:3850008‑M2/1‑1 (MQ=255)
                                  aaGTAGTAAAATAGTTAACCCGATCAAGActacta  <  1:20346104/35‑1 (MQ=255)
                                  |                                  
TTATTACTGATGCGCAGTTATTCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCAAGACTACTA  >  REL606/1648316‑1648384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.