New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 9904112 (1.090)9 (0.100) 5/42 NT 11.5% intergenic (+13/+22) mogA/yaaH molybdenum cofactor biosynthesis protein/conserved inner membrane protein associated with acetate transport
?REL606 4001993 = 40 (0.440)intergenic (+10/‑32) tatC/tatD TatABCE protein translocation system subunit/DNase, magnesium‑dependent

AGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTCATATGGAGTACAGGATG  >  REL606/4001959‑4002027
                                  |                                  
aGAAAGCGAAAAAACTGAAGAATAAATTCAACCGc                                    >  1:14610023/1‑35 (MQ=255)
 gAAAGCTAAAAAACTGAATAATAAATTCAACCGcc                                   >  1:7157131/1‑35 (MQ=37)
 gAAAGCGAAAAAACTGAAGAATAAATTCAACCGcc                                   >  1:14557111/1‑35 (MQ=255)
 gAAAGCGAAAAAACTGAAGAATAAATTCAACCGcc                                   >  1:7188889/1‑35 (MQ=255)
 gAAAGCGAAAAAACTGAAGAATAAATTCAACCCcc                                   >  1:433196/1‑35 (MQ=255)
  aaaGCGAAAAAACTGAAGAATAAATTCAACCGccc                                  >  1:10063362/1‑35 (MQ=255)
  aaaGCGAAAAAACTGAAGAATAAATTCAACCGccc                                  >  1:3718434/1‑35 (MQ=255)
  aaaGCGAAAAAACTGAAGAATAAATTCAACCGccc                                  >  1:6934413/1‑35 (MQ=255)
  aaaGCGAAAAAACTGAAGAATAAATTCAAACGccc                                  <  1:4104377/35‑1 (MQ=255)
   aaGCGAAAAAACTGAAGAATAAATTCAACCGCCCg                                 >  1:18348525/1‑35 (MQ=255)
   aaGCGAAAAAACTGAAGAATAAATTCAACCGCCCg                                 >  1:5838553/1‑35 (MQ=255)
   aaGCGAAAAAACTGAAGAATAAATTCAACCGCCCg                                 >  1:5867929/1‑35 (MQ=255)
   aaGCGAAAAAACTGAAGAATAAATTCAACCGCCCg                                 >  1:15417652/1‑35 (MQ=255)
   aaGCGAAAAAACTCAAGAATAAATTCAACCGCCCg                                 >  1:18985768/1‑35 (MQ=255)
    aGCGAAAAAACTGAAGAATAAATTCAACCGCCCGt                                >  1:6933839/1‑35 (MQ=255)
    aGCGAAAAAACTGAAGAATAAATTCAACCGCCCGt                                >  1:13948616/1‑35 (MQ=255)
     gctaaaaaaCTGAAGAATAAATTCAACCGCCCGTc                               >  1:2374700/4‑35 (MQ=255)
     gCGAAAAAACTGAAGAATAAATTCAACCGCCCGTc                               >  1:11888454/1‑35 (MQ=255)
     gCGAAAAAACTGAAGAATAAATTCAACCGCCCGTc                               >  1:11597144/1‑35 (MQ=255)
      cGAAAAAACTGAAGAATAAATTCAACCGCCCGTCa                              >  1:7781434/1‑35 (MQ=255)
      cGAAAAAACTGAAGAATAAATTCAACCGCCCGTCa                              >  1:1485323/1‑35 (MQ=255)
       gAAAAAACTGAAGAATAAATTCAACCGCCCGTCAg                             >  1:18446254/1‑35 (MQ=255)
       gAAAAAACTGAAGAATAAATTCAACCGCCCGTCAg                             >  1:8374109/1‑35 (MQ=255)
       gAAAAAACTGAAGAATAAATTCAACCGCCCGTCAg                             >  1:14512695/1‑35 (MQ=255)
        aaaaaaCTGAAGAATAAATTCAACCGCCCGTCAgg                            >  1:10102105/1‑35 (MQ=255)
        aaaaaaCTGAAGAATAAATTCAACCGCCCGTCAgg                            >  1:8289608/1‑35 (MQ=255)
        aaaaaaCTGAAGAATAAATTCAACCGCCCGTCAgg                            >  1:18441402/1‑35 (MQ=255)
        aaaaaaCTGAAGAATAAATTCAACCGCCCGTCAgg                            >  1:18285459/1‑35 (MQ=255)
         aaaaaCTGAAGAATAAATTCAACCGCCCGTCAggg                           >  1:8241997/1‑35 (MQ=255)
          aaaaCTGAAGAATAAATTCAACCGCCCGTCAGGGc                          >  1:16825408/1‑35 (MQ=255)
          aaaaCTGAAGAATAAATTCAACCGCCCGTCAGGGc                          >  1:4487064/1‑35 (MQ=255)
          aaaaCTGAAGAATAAATTCAACCGCCCGTCAGGGc                          >  1:373294/1‑35 (MQ=255)
           aaaCTGAAGAATAAATTCAACCGCCCGTCAGGGCg                         >  1:17257427/1‑35 (MQ=255)
           aaaCTGAAGAATAAATTCAACCGCCCGTCAGGGCg                         >  1:10304395/1‑35 (MQ=255)
            aaCTGAATAATAAATTCAACCGCCCGTCAGGGCgg                        >  1:12654259/1‑35 (MQ=255)
            aaCTGAAGAATAAATTCAACCGCCCGTCAGGGCgg                        >  1:3467054/1‑35 (MQ=255)
            aaCTGAAGAATAAATTCAACCGCCCGTCAGGGCgg                        >  1:8239813/1‑35 (MQ=255)
             aCTGAAGAATAAATTCAACCGCCCGTCAGGGCggg                       >  1:11148276/1‑34 (MQ=255)
             aCTGAAGAATAAATTCAACCGCCCGTCAGGGCggg                       >  1:4313886/1‑34 (MQ=255)
             aCTAAAGAAAAAATCCACCCGCCCGTCAGGGCGGt                       <  1:19501575/35‑1 (MQ=16)
              cTGATGAATAAATTCAACCGCCCGTCAGGGCgggt                      >  1:5283638/1‑33 (MQ=37)
              cTGAAGAATAAATTCAACCGCCCGTCAGGGCgggt                      >  1:12460278/1‑33 (MQ=255)
              cTGAAGAATAAATTCAACCGCCCGTCAGGGCgggt                      >  1:10804099/1‑33 (MQ=255)
              cTGAAGAATAAATTCAACCGCCCGTCAGGGCgggg                      >  1:11384203/1‑33 (MQ=255)
               tGAAGAATAAATTCAACCGCCCGTCAGGGCGGGTg                     >  1:17524899/1‑35 (MQ=255)
                gaataaTAAATTCAACCGCCCGTCAGTGCGGTTGt                    >  1:2665121/1‑35 (MQ=37)
                gaagaaTAAATTCAACCGCCCGTCAGGGCGGGTgg                    >  1:2817267/1‑34 (MQ=255)
                gaagaaTAAATTCAACCGCCCGTCAGGGCGGGTgc                    >  1:14932021/1‑34 (MQ=255)
                 aagaaTAAATTCAACCGCCCGTCAGGGCGGGTggg                   >  1:16861782/1‑33 (MQ=38)
                 aagaaTAAATTCAACCGCCCGTCAGGGCGGGTGtg                   >  1:15133435/1‑34 (MQ=255)
                  agaaTAAATTCAACCGCCCGTCAGGGCGGGTggtg                  >  1:13570398/1‑32 (MQ=37)
                  agaaTAAATTCAACCGCCCGTCAGGGCGGGTgggg                  >  1:10055371/1‑32 (MQ=37)
                   aaaaaaatccccccgCCCGTCAGGGCGGTTGTCat                 <  1:5907627‑M2/20‑1 (MQ=255)
                   aaaaaaatccacccgCCCGTCAGGGCGGTTGTCat                 <  1:10391100‑M2/20‑1 (MQ=255)
                    aaaaaatccccccgCCCGTCAGGGCGGTTGTCata                <  1:982103‑M2/21‑1 (MQ=255)
                    aaTAAATTCAAGCGCCCGTCAGGGCGGTTGTCata                <  1:14281841/35‑1 (MQ=255)
                    aaTAAATTCAACCGCCCGTCAGGGCTGGTGTCata                >  1:4859612/1‑35 (MQ=38)
                     aTAAATTCAACCGCCCGTCAGGGCTGGTGTCatat               >  1:18436526/1‑35 (MQ=37)
                     aTAAATTCAACCGCCCGTCAGGGCGGGTGTCatat               >  1:7114139/1‑35 (MQ=255)
                      caaatccccccgCCCGTCAGGGCGGTTGTCATATg              <  1:20251378‑M2/23‑1 (MQ=255)
                      aaaatccacccgCCCGTCAGGGCGGTTGTCATATg              <  1:9230855‑M2/23‑1 (MQ=255)
                      aaaatccacccgCCCGTCAGGGCGGTTGTCATATg              <  1:2063598‑M2/23‑1 (MQ=255)
                       aaatccacccgCCCGTCAGGGCGGTTGTCATATgg             <  1:16888636‑M2/24‑1 (MQ=255)
                         atccccccgCCCGTCAGGGCGGTTGTCATATGGAg           <  1:10981631‑M2/26‑1 (MQ=255)
                         atccacccgCCCGTCAGGGCGGTTGTCATATGGAg           <  1:17899403‑M2/26‑1 (MQ=255)
                          tccccccgCCCGTCAGGGCGGTTGTCATATGGAGt          <  1:16254958‑M2/27‑1 (MQ=255)
                          tccacccgCCCGTCAGGGCGGTTGTCATATGGAGt          <  1:11331416‑M2/27‑1 (MQ=255)
                          tccacccgCCCGTCAGGGCGGTTGTCATATGGAGt          <  1:19881034‑M2/27‑1 (MQ=255)
                           ccccccgCCCGTCAGGGCGGTTGTCATATGGAGTa         <  1:4161896‑M2/28‑1 (MQ=255)
                           ccccccgCCCGTCAGGGCGGTTGTCATATGGAGTa         <  1:19672628‑M2/28‑1 (MQ=255)
                           ccccccgCCCGTCAGGGCGGTTGTCATATGGAGTa         <  1:13694448‑M2/28‑1 (MQ=255)
                           ccacccgCCCGTCAGGGCGGTTGTCATATGGAGTa         <  1:19118505‑M2/28‑1 (MQ=255)
                           acccccgCCCGTCAGGGCGGTTGTCATATGGAGTa         <  1:4623038‑M2/28‑1 (MQ=255)
                             tcccgCCCGTCAGGGCGGTTGTCATATGGAGTACa       <  1:16689180‑M2/30‑1 (MQ=255)
                             ccccgCCCGTCAGGGCGGTTGTCATATGGAGTACa       <  1:5335882‑M2/30‑1 (MQ=255)
                             agccgCCCGTCAGGGCGGTTGTCATATGGAGTACa       <  1:17622551‑M2/30‑1 (MQ=255)
                              cccgCCCGTCAGGGCGGTTGTCATATGGAGTACAg      <  1:7352113‑M2/31‑1 (MQ=255)
                              cccgCCCGTCAGGGCGGTTGTCATATGGAGTACAg      <  1:20309400‑M2/31‑1 (MQ=255)
                               ccgCCCGTCAGGGCGGTTGTCATATGGAGTACAgg     <  1:7377565‑M2/32‑1 (MQ=255)
                               ccgCCCGTCAGGGCGGTTGTCATATGGAGTACAgg     <  1:18288882‑M2/32‑1 (MQ=255)
                                cgCCCGTCAGGGCGGTTGTCATATGGAGTACAGGa    <  1:18379752‑M2/33‑1 (MQ=255)
                                 gCCCGTCAGGGCGGTTGTCATATGGAGTACAGGAt   <  1:14523210‑M2/34‑1 (MQ=255)
                                 gCCCGTCAGGGCGGTTGTCATATGGAGTACAGGAt   <  1:14494418‑M2/34‑1 (MQ=255)
                                 gCCCGTCAGGGCGGTTGTCATATGGAGTACAGGAt   <  1:19598121‑M2/34‑1 (MQ=255)
                                  cccGTCAGGGCGGTTGTCATATGGAGTACAGGATg  <  1:7182175/35‑1 (MQ=255)
                                  cccGTCAGGGCGGTTGTCATATGGAGTACAGGATg  <  1:15508206/35‑1 (MQ=255)
                                  |                                  
AGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTCATATGGAGTACAGGATG  >  REL606/4001959‑4002027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.