New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 67940175 (0.730)6 (0.070) 3/38 NT 13.9% intergenic (‑174/+207) metT/asnB tRNA‑Met/asparagine synthetase B
?REL606 4198479 = 15 (0.180)coding (341/1737 nt) aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein

ATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/679363‑679401
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAG  >  REL606/4198479‑4198512
                                                                         
ATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCC                                        >  1:2505816/1‑35
ATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCC                                        <  1:85155/35‑1
ATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCC                                        <  1:19697480/35‑1
ATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCC                                        <  1:14969001/35‑1
ATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCC                                        >  1:18108724/1‑35
ATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCC                                        >  1:19378944/1‑35
 TTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCC                                       >  1:3347999/1‑35
 TTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCC                                       >  1:7334048/1‑35
 TTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCC                                       <  1:7921137/35‑1
  TCGTCAATTATTGTTTACTTTGTGTTTTTTCCCCA                                      >  1:16363094/1‑35
  TCGTCAATTATTGTTTACTTTGTGTTTTTTCCCCA                                      >  1:15614379/1‑35
  TCGTCAATTATTGTTTACTTTGTGTTTTTTCCCCA                                      <  1:17098062/35‑1
  TCGTCAATTATTGTTTACTTTGTGTTTTTTCCCCA                                      >  1:13479136/1‑35
  TCGTCAATTATTGTTTACTTTGTGTTTTTTCCCCA                                      >  1:19398124/1‑35
  TCGTCAATTATTGTTTACTTTGTGTTTTTTCCCCA                                      <  1:4415368/35‑1
   CGTCAATTATTGTTTACTTTGTGTTTTTTCCCCAC                                     >  1:17109727/1‑35
   CGTCAATTATTGTTTACTTTGTGTTTTTTCCCCAC                                     >  1:4938115/1‑35
   CGTCAATTATTGTTTACTTTGTGTTTTTTCCCCAC                                     >  1:20536923/1‑35
   CGTCAATTATTGTTTACTTTGTGTTTTTTCCCCAC                                     <  1:2884302/35‑1
   CGTCAATTATTGTTTACTTTGTGTTTTTTCCCCAC                                     <  1:6226664/35‑1
   CGTCAATTATTGTTTACTTTGTGTTTTTTCCCCAC                                     >  1:7966938/1‑35
   CGTCAATTATTGTTTACTTTGTGTTTTTTCCCCAC                                     >  1:14660807/1‑35
   CGTCAATTATTGTTTACTTTGTGTTTTTTCCCCAC                                     >  1:12873102/1‑35
   CGTCAATTATTGTTTACTTTGTGTTTTTTCCCCAC                                     <  1:10670301/35‑1
   CGTCAATTATTGTTTACTTTGTGTTTTTTCCCCAC                                     >  1:9428058/1‑35
    GTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    <  1:4518497/35‑1
    GTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    <  1:11666233/35‑1
    GTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    <  1:740831/35‑1
    GTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    <  1:1881850/35‑1
    GTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    >  1:18400291/1‑35
    GTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    >  1:14266545/1‑35
    GTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    <  1:2887047/35‑1
    GTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    >  1:3376382/1‑35
    GTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    <  1:17507184/35‑1
    GTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    <  1:3243561/35‑1
                        gtTTTTTTCCCCACCGCTCGCTTACTCCCGAGCGG                <  1:17571849/33‑1
                        gtTTTTTTCCCCACCGCTCGCTTACTCCCGAGCGG                <  1:16845609/33‑1
                        TGTTTTTTCCCCACCGCTCGCTTACTCCCGAGCGG                <  1:7807670/35‑1
                          TTTTTTCCCCACCGCTCGCTTACTCCCGAGCGGCT              <  1:2158653/35‑1
                          TTTTTCCCCCACCGCTCGCTTACTCCCGAGCGGCT              <  1:12673570/35‑1
                            aTTTCCCCACCGCTCGCTTACTCCCGAGCGGCTTT            <  1:15143312/34‑1
                            TTTGCCCCACCGCTCGCTTACTCCCGAGCGGCTTT            <  1:5190486/35‑1
                              ttgCCCACCGCTCGCTTACTCCCGAGCGGCTTTTT          <  1:17702553/32‑1
                              TTCCCCACCGCTCGCTTACTCCCGAGCGGCTTTTT          <  1:18925921/35‑1
                               ccgCCACCGCTCGCTTACTCCCGAGCGGCTTTTTA         <  1:9636249/32‑1
                               cCCCCCCCGCTCGCTTACTCCCGAGCGGCTTTTTA         <  1:8800274/34‑1
                                CCCCACCGCTCGCTTACTCCCGAGCGGCTTTTTAT        <  1:10364888/35‑1
                                CCCCACCGCTCGCTTACTCCCGAGCGGCTTTTTAT        <  1:16239460/35‑1
                                CCCCACCGCTCGCTTACTCCCGAGCGGCTTTTTAT        <  1:9023181/35‑1
                                  CCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCT      <  1:20298390/35‑1
                                  CCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCT      <  1:12855173/35‑1
                                   CACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTT     <  1:10280083/35‑1
                                   CACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTT     <  1:8400006/35‑1
                                    cCCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTT    <  1:1148128/34‑1
                                    ACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTT    <  1:15247101/35‑1
                                    ACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTT    <  1:6249834/35‑1
                                    ACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTT    <  1:17905042/35‑1
                                    ACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTT    <  1:4841092/35‑1
                                    ACCGCTAGCTTACTCCCGAGCGGCTTTTTATCTTT    <  1:5207247/35‑1
                                     CCGCTCGCTTACTCCCGAGCGGCTTTTTTTCTTTA   >  1:6511164/1‑35
                                     CCGCTCGCTTACTCCCGAGCGGCTTTTTTTCTTTA   >  1:13281299/1‑35
                                     CCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTA   >  1:9581365/1‑35
                                     CCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTA   <  1:13752492/35‑1
                                     CCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTA   <  1:2505439/35‑1
                                      CGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAG  <  1:12454119/35‑1
                                      CGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAG  <  1:2060379/35‑1
                                      CGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAG  <  1:3159706/35‑1
                                                                         
ATTCGTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/679363‑679401
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAG  >  REL606/4198479‑4198512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.