New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3809862 =86 (0.840)7 (0.100) 4/34 NT 8.2% coding (207/1503 nt) uhpB sensory histidine kinase in two‑component regulatory sytem with UhpA
?REL606 3882315 = 96 (1.320)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

Only 100 of 121 total aligned reads displayed.

TTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAGCACCGGCCAGTAT  >  REL606/3809828‑3809895
                                  |                                 
ttAAACCGACCGCCTGCGTTAGCCAGTAAATcagc                                   >  1:10228271/1‑35 (MQ=255)
ttAAACCGACCGCCTGCGTTAGCCAGTAAATcagc                                   >  1:15874914/1‑35 (MQ=255)
 tAAACCGACCGCCTGCGTTAGCCAGTAAATcagca                                  >  1:9122592/1‑35 (MQ=255)
 tAAACCGACCGCCTGCGTTAGCCAGTAAATcagca                                  >  1:8105521/1‑35 (MQ=255)
  aaaCCGACCGCCTGCGTTAGCCAGTAAATcagcag                                 >  1:15681352/1‑35 (MQ=255)
  aaaCCGACCGCCTGCGTTAGCCAGTAAATcagcag                                 >  1:18433955/1‑35 (MQ=255)
  aaaCCGACCGCCTGCGTTAGCCAGTAAATcagcag                                 >  1:7483188/1‑35 (MQ=255)
  aaaCCGACCGCCTGCGTTAGCCAGTAAATcagcag                                 >  1:11893264/1‑35 (MQ=255)
   aaCCGACCGCCTGCGTTAGCCAGTAAATCagcagc                                >  1:18109368/1‑35 (MQ=255)
   aaCCGACCGCCTGCGTTAGCCAGTAAATCagcagc                                >  1:12879612/1‑35 (MQ=255)
    accgaccgCCTGCGTTAGCCAGTAAATCAGCAGcc                               >  1:13842356/1‑35 (MQ=255)
    accgaccgCCTGCGTTAGCCAGTAAATCAGCAGcc                               >  1:10776509/1‑35 (MQ=255)
    accgaccgCCTGCGTTAGCCAGTAAATCAGCAGcc                               >  1:5419881/1‑35 (MQ=255)
     ccgaccgCCTGCGTTAGCCAGTAAATCAGCAGCCa                              >  1:7219292/1‑35 (MQ=255)
     ccgaccgCCTGCGTTAGCCAGTAAATCAGCAGCCa                              >  1:13600412/1‑35 (MQ=255)
     ccgaccgCCTGCGTTAGCCAGTAAATCAGCAGCCa                              >  1:4660197/1‑35 (MQ=255)
      cgatcgCCTGCGTTAGCCAGTAAATCAGCAGCCAc                             >  1:17810289/1‑35 (MQ=255)
      cgaccgCCTGCGTTAGCCAGTAAATCAGCAGCCAc                             >  1:14385943/1‑35 (MQ=255)
      cgaccgCCTGCGTTAGCCAGTAAATCAGCAGCCAc                             >  1:5888384/1‑35 (MQ=255)
      cgaccgCCTGCGTTAGCCAGTAAATCAGCAGCCAc                             >  1:15136655/1‑35 (MQ=255)
      cgaccgCCTGCGTTAGCCAGTAAATCAGCAGCCAc                             >  1:7747371/1‑35 (MQ=255)
      cgaccgCCTGCGTTAGCCAGTAAATCAGCAGCCAc                             >  1:8673123/1‑35 (MQ=255)
       gaccgCCTGCGTTAGCCAGTAAATCAGCAGCCACt                            >  1:14686731/1‑35 (MQ=255)
       gaccgCCTGCGTTAGCCAGTAAATCAGCAGCCACt                            >  1:14928224/1‑35 (MQ=255)
       gaccgCCTGCGTTAGCCAGTAAATCAGCAGCCACt                            >  1:10821462/1‑35 (MQ=255)
       gaccgCCTGCGTTAGCCAGTAAATCAGCAGCCACt                            >  1:3223787/1‑35 (MQ=255)
        accgCCTGCGTTAGCCAGTAAATCAGCAGCCACtt                           >  1:13238677/1‑34 (MQ=255)
        accgCCTGCGTTAGCCAGTAAATCAGCAGCCACTc                           >  1:13730317/1‑35 (MQ=255)
        accgCCTGCGTTAGCCAGTAAATCAGCAGCCACTc                           >  1:16012419/1‑35 (MQ=255)
        accgCCTGCGTTAGCCAGTAAATCAGCAGCCACTc                           >  1:8097599/1‑35 (MQ=255)
         ccgCCTGCGTTAGCCAGTAAATCAGCAGCCACTcc                          >  1:12109729/1‑35 (MQ=255)
         ccgCCTGCGTTAGCCAGTAAATCAGCAGCCACTcc                          >  1:7484669/1‑35 (MQ=255)
          cgCCTGCGTTAGCCAGTAAATCAGCAGCCACTCcg                         >  1:14372153/1‑35 (MQ=255)
          cgCCTGCGTTAGCCAGTAAATCAGCAGCCACTCcg                         >  1:14649496/1‑35 (MQ=255)
          cgCCTGCGTTAGCCAGTAAATCAGCAGCCACTCcg                         >  1:12206038/1‑35 (MQ=255)
          cgCCTGCGTTAGCCAGTAAATCAGCAGCCAATCcg                         >  1:5213488/1‑35 (MQ=255)
           gCCTGCGTTAGCCAGTAAATCAGCAGCCACTCcgc                        >  1:1998988/1‑35 (MQ=255)
           gCCTGCGTTAGCCAGTAAATCAGCAGCCACTCcgc                        >  1:17968861/1‑35 (MQ=255)
           gCCTGCGTTAGCCAGTAAATCAGCAGCCACTCcgc                        >  1:10188490/1‑35 (MQ=255)
            ccTGCGTTAGCCAGTAAATCAGCAGCCACTCcgcg                       >  1:9160659/1‑35 (MQ=255)
            ccTGCGTTAGCCAGTAAATCAGCAGCCACTCcgcg                       >  1:2370069/1‑35 (MQ=255)
             cTGCGTTAGCCAGTAAATCAGCGGCCACTCCgcgc                      >  1:1200872/1‑35 (MQ=255)
             cTGCGTTAGCCAGTAAATCAGCAGCCACTCCgcgc                      >  1:1657058/1‑35 (MQ=255)
              tGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGcc                     >  1:2468365/1‑35 (MQ=255)
               gCGTTAGCCAGTAAATCAGCAGCCACTCCGCGccc                    >  1:7693327/1‑35 (MQ=255)
               gCGTTAGCCAGTAAATCAGCAGCCACTCCGCGccc                    >  1:11651441/1‑35 (MQ=255)
               gCGTTAGCCAGTAAATCAGCAGCCACTCCGCGccc                    >  1:14877743/1‑35 (MQ=255)
               gCGTTAGCCAGTAAATCAGCAGCCACTCCGCGccc                    >  1:11766668/1‑35 (MQ=255)
               gCGTTAGCCAGTAAATCAGCAGCCACTCCGCGccc                    >  1:11650606/1‑35 (MQ=255)
               gCGTTAGCCAGTAAATCAGCAGCCACTCCGCGccc                    >  1:3712566/1‑35 (MQ=255)
                cGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCca                   >  1:7941119/1‑35 (MQ=255)
                 gTTAGCCAGTAAATCAGCAGCCCCTCCGCGCCcag                  >  1:7419148/1‑35 (MQ=255)
                 gTTAGCCAGTAAATCAGCAGCCACTCCGCGCCcag                  >  1:7545713/1‑35 (MQ=255)
                 gTTAGCCAGTAAATCAGCAGCCACTCCGCGCCcag                  >  1:4729164/1‑35 (MQ=255)
                 gTTAGCCAGTAAATCAGCAGCCACTCCGCGCCcag                  >  1:19571441/1‑35 (MQ=255)
                  ttAGCCATTAAATCAGCAGCCACTCCGCGCCcagc                 >  1:5678453/1‑35 (MQ=255)
                  ttAGCCAGTAAATCAGCAGCCACTCCGCGCCcagc                 >  1:14935308/1‑35 (MQ=255)
                  ttAGCCAGTAAATCAGCAGCCACTCCGCGCCcagc                 >  1:15624584/1‑35 (MQ=255)
                   tAGCCAGTAAATCAGCAGCCACTCCGCGCCcaaca                >  1:6682311/1‑35 (MQ=255)
                    aGCCAGTAAATCAGCAGCCACTCCGCGCCcagcag               >  1:8762661/1‑35 (MQ=255)
                    aGCCAGTAAATCAGCAGCCACTCCGCGCCcagcag               >  1:12456401/1‑35 (MQ=255)
                     gCCAGTAAATCAGCAGCCACTCCGCGCCCagcagc              >  1:14411638/1‑35 (MQ=255)
                     gCCAGTAAATCAGCAGCCACTCCGCGCCCagcagc              >  1:3425291/1‑35 (MQ=255)
                     gCCAGTAAATCAGCAGCCACTCCGCGCCCagcagc              >  1:3618374/1‑35 (MQ=255)
                     gCCAGTAAATCAGCAGCCACTCCGCGCCCagcagc              >  1:15801426/1‑35 (MQ=255)
                     ccaaaaaacccccCAGCCACTCCGCGCCCagcagc              >  1:1683037‑M1/14‑35 (MQ=255)
                      ccAGTAAATCAGCAGCCACTCCGCGCCCAgcagca             >  1:17735701/1‑35 (MQ=255)
                      ccAGTAAATCAGCAGCCACTCCGCGCCCAgcagca             >  1:16933193/1‑35 (MQ=255)
                       cAGTAAATCAGCAGCCACTCCGCGCCCAGCAGCAc            >  1:12286008/1‑35 (MQ=255)
                       cAGTAAATCAGCAGCCACTCCGCGCCCAGCAGCAc            >  1:9467760/1‑35 (MQ=255)
                       cAGTAAATCAGCAGCCACTCCGCGCCCAGCAGCAc            >  1:5417622/1‑35 (MQ=255)
                       cAGTAAATCAGCAGCCACTCCGCGCCCAGCAGCAc            >  1:15313778/1‑35 (MQ=255)
                       cAGTAAATCAGCAGCCACTCCGCGCCCAGCAGCAc            >  1:1928634/1‑35 (MQ=255)
                       cAGTAAATCAGCAGCCACTCCGCGCCCAGCAGCAc            >  1:14361825/1‑35 (MQ=255)
                        gaaaccccccCAGCCACTCCGCGCCCAGCAGCAcc           >  1:5542116‑M1/11‑35 (MQ=255)
                        agcaaaTCAGCAGCCACTCTGCGCCCAGCAGCAcc           >  1:2739931/4‑35 (MQ=25)
                        aGTAAATCAGCAGCCACTCCGCGCCCAGCAGCAcc           >  1:13464495/1‑35 (MQ=255)
                         gTAAATCAGCAGCCACTCCGCGCCCAGCAGCACCg          >  1:8923260/1‑35 (MQ=255)
                         gTAAATCAGCAGCCACTCCGCGCCCAGCAGCACCg          >  1:19674074/1‑35 (MQ=255)
                         gTAAATCAGCAGCCACTCCGCGCCCAGCAGCACCg          >  1:6100840/1‑35 (MQ=255)
                          tAAATCAGCAGCCACTCCGCGCCCAGCAGCACCgg         >  1:15841743/1‑35 (MQ=255)
                          tAAATCAGCAGCCACTCCGCGCCCAGCAGCACCgg         >  1:16994019/1‑35 (MQ=255)
                          tAAATCAGCAGCCACTCCGCGCCCAGCAGCACCgg         >  1:13454269/1‑35 (MQ=255)
                          tAAATCAGCAGCCACTCCGCGCCCAGCAGCACCgg         >  1:5588239/1‑35 (MQ=255)
                          tAAATCAGCAGCCACTCCGCGCCCAGCAGCACCgg         >  1:7303616/1‑35 (MQ=255)
                          aaacccccCAGCCACTCCGCGCCCAGCAGCACCgg         >  1:16493296‑M1/9‑35 (MQ=255)
                          aaacccccCAGCCACTCCGCGCCCAGCAGCACCgg         >  1:5036265‑M1/9‑35 (MQ=255)
                           aaaTCAGCAGCCACTCCGCGCCCAGCAGCAccaga        >  1:3343639/1‑32 (MQ=255)
                           aaaTCAGCAGCCACTCCGCGCCCAGCAGCACCTGc        >  1:12563046/1‑35 (MQ=255)
                           aaaTCAGCAGCCACTCCGCGCCCAGCAGCACCGGc        >  1:13963501/1‑35 (MQ=255)
                            acccccCAGCCACTCCGCGCCCAGCAGCACCGGcc       >  1:7619774‑M1/7‑35 (MQ=255)
                            aaTCAGCAGCCACTCCGCGCCCAGCAGCACCGGcc       >  1:4908318/1‑35 (MQ=255)
                             cccccCAGCCACTCCGCGCCCAGCAGCACCGGCCa      >  1:2498400‑M1/6‑35 (MQ=255)
                             cccccCAGCCACTCCGCGCCCAGCAGCACCGGCCa      >  1:9302866‑M1/6‑35 (MQ=255)
                             aTCAGCAGCCACTCCGCGCCCAGCAGCACCGGCCa      >  1:2052155/1‑35 (MQ=255)
                              tCAGCAGCCACTCCGCGCCCAGCAGCACCGGCCAg     >  1:11096037/1‑35 (MQ=255)
                               cagcagCCACTCCGCGCCCAGCAGCACCGGCCAGt    >  1:14577416/1‑35 (MQ=255)
                                ccCAGCCACCCCGCGCCCAGCAGCACCGGCCAGTa   >  1:5829660‑M1/3‑35 (MQ=255)
                                ccCAGCCACCCCGCGCCCAGCAGCACCGGCCAGTa   >  1:10257085‑M1/3‑35 (MQ=255)
                                 gcagcCACTCCGCGCCCAGCAGCACCGGCCAGTAt  >  1:15563469/1‑35 (MQ=255)
                                  |                                 
TTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAGCACCGGCCAGTAT  >  REL606/3809828‑3809895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.