New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 505984 =28 (0.270)12 (0.130) 6/42 NT 16.8% coding (808/816 nt) allR DNA‑binding transcriptional repressor
?REL606 2525727 = 94 (1.050)coding (4/1350 nt) hyfD hydrogenase 4 membrane subunit

Only 100 of 169 total aligned reads displayed.

TTTCGTTTTCGCCACAACGTCGGGCCGCCGAATGGGGGTTTTGTTCGCCGCACTGACCACGCTGTGCAT  >  REL606/2525693‑2525761
                                  |                                  
tccgcagagcgggatgcgacagacattatggatgg                                    >  1:288511‑M2/35‑35 (MQ=255)
 ccgcagagcgggatgcgacagacattatggatggg                                   >  1:17086068‑M2/34‑35 (MQ=255)
 ccgcagagcgggatgcgacagacattatggatggg                                   >  1:11743136‑M2/34‑35 (MQ=255)
  tcgtttTCGCCACAACGTCGGGCCGGCGAATgggg                                  >  1:7881264/1‑35 (MQ=255)
  tcgtttTCGCCACAACGTCGGGCCGCCGAATgggg                                  >  1:11637089/1‑35 (MQ=255)
  cgcagagcgggatgcgacagacattatggatgggg                                  >  1:10273900‑M2/33‑35 (MQ=255)
  cgcagagcgggatgcgacagacattatggatgggc                                  >  1:18957142‑M2/33‑34 (MQ=255)
   gcagagcgggatgcgacagacattatggatggggg                                 >  1:3523611‑M2/32‑35 (MQ=255)
   cgtttTCGCCACAACGTCGGGCCGCCGAATggggg                                 >  1:3867565/1‑35 (MQ=255)
    gtttTCGCCACAACGTCGGGCCGCCGAATgggggg                                >  1:7542223/1‑34 (MQ=255)
    gtttTCGCCACAACGTCGGGCCGCCGAATgggggg                                >  1:11131614/1‑34 (MQ=255)
    cagagcgggatgcgacagacattatggatggggtt                                >  1:15337725‑M2/31‑33 (MQ=255)
    cagagcgggatgcgacagacattatggatgGGGGt                                >  1:17307965‑M2/31‑35 (MQ=255)
      tttCGCCACAACGTCGGGCCGCCGAATGGGGGgtt                              >  1:14887971/1‑35 (MQ=255)
      gagcgggatgcgacagacattatggatgGGGtttg                              >  1:5085824‑M2/29‑34 (MQ=255)
      gagcgggatgcgacagacattatggatgGGGTttt                              >  1:14446872‑M2/29‑35 (MQ=255)
       ttCGCCACACCGTCGGGCCGCCGAATGGGGGtttt                             <  1:17289158/35‑1 (MQ=255)
       ttCGCCACAACGTCGGGCCGCCGAATGGGGGtttn                             <  1:4142625/35‑1 (MQ=255)
       ttCGCCACAACGTCGGGCCGCCGAATGGGGGgttt                             >  1:13687622/1‑35 (MQ=255)
       ttCGCCACAACGTCGGGCCGCCGAATGGGGGgttt                             >  1:6317275/1‑35 (MQ=255)
       ttCCCCACAACGTCGGGCCGCCGAATGGGGGtttt                             <  1:16857699/35‑1 (MQ=255)
       agcgggatgcgacagacattatggatgGGGGtttt                             >  1:12910844‑M2/28‑35 (MQ=255)
       agcgggatgcgacagacattatggatgGGGGtttt                             >  1:10946807‑M2/28‑35 (MQ=255)
        tCGCCACAACGTCGGGCCGCCGAATGGGGGTTTTg                            <  1:9109362/35‑1 (MQ=255)
        tCGCCACAACGTCGGGCCGCCGAATGGGGGGTTTg                            >  1:11522261/1‑35 (MQ=255)
        gcgggatgcgacagacattatggatgGGGGTTTTg                            >  1:15032790‑M2/27‑35 (MQ=255)
         cgggatgcgacagacattatggatgGGGGTTTTGt                           >  1:3006655‑M2/26‑35 (MQ=255)
         cGCCACAACGTCGGGCCGCCGAATGGGGGGTTTGt                           >  1:10103750/1‑35 (MQ=255)
          gCCACACCGTCGGGCCGCCGAATGGGGGTTTTGtt                          <  1:7946966/35‑1 (MQ=255)
          gCCACAACGTCGGGCCGCCGAATGGGGGTTTTGtt                          <  1:17738208/35‑1 (MQ=255)
          gCCACAACGTCGGGCCGCCGAATGGGGGGTTTggt                          >  1:3387949/1‑33 (MQ=25)
          gCCACAACGTCGGGCCGCCGAATGGGGGGTTTGtt                          >  1:2811681/1‑35 (MQ=255)
          gCCACAACGTCGGGCCGCCGAATGGGGGGTTTGtt                          >  1:13344321/1‑35 (MQ=255)
           ggatgcgacagacattatggatgGGGGTTTTGTTc                         >  1:4787997‑M2/24‑35 (MQ=255)
           ccACAACGTCGGGCCGCCGAATGGGGGGTTTGttg                         >  1:7212778/1‑34 (MQ=255)
            cacaACGTCGGGCCGCCGAATGGGGGTTTTGTTcg                        <  1:16968972/35‑1 (MQ=255)
            cacaACGTCGGGCCGCCGAATGGGGGGTTTGTTcg                        >  1:17544334/1‑35 (MQ=255)
            cacaACGTCGGGCCGCCGAATGGGGGGTTTGTTcg                        >  1:18145249/1‑35 (MQ=255)
            cacaACGTCGGGCCGCCGAATGGGGGGTTTGTTcg                        >  1:12484502/1‑35 (MQ=255)
            cacaACGTCGGGCCGCCGAATGGGGGGTTTGTTcg                        >  1:16223954/1‑35 (MQ=255)
             acaCCGTCGGGCCGCCGAATGGGGGTTTTGTTcgc                       <  1:11855971/35‑1 (MQ=255)
             acaCCGTCGGGCCGCCGAATGGGGGTTTTGTTcgc                       <  1:8572337/35‑1 (MQ=255)
             acaACGTCGGGCCGCCGAATGGGGGGGTTGTTtgc                       >  1:13073154/1‑35 (MQ=21)
             acaACGTCGGCCCGCCGAATGGGGGTTTTGTTcgc                       <  1:18688366/35‑1 (MQ=255)
              tgcgacagacattatggatgGGGGTTTTgttccca                      >  1:5850326‑M2/21‑32 (MQ=255)
              caccGTCGGCCCGCCGAATGGGGGTTTTGTTcgcc                      <  1:14118312/32‑1 (MQ=37)
              caACGTCGGGCCGCCGAATGGGGGTTTTGTTcgcc                      >  1:10560804/1‑35 (MQ=255)
               agcGTCCGGCCGCCGAATGGGGGTTTTGTTcgccg                     <  1:59693/33‑1 (MQ=38)
                ccGTCGGGCCGCCGAATGGGGGTTTTGTTcgccgc                    <  1:10375558/34‑1 (MQ=255)
                ccGTCGGGCCGCCGAATGGGGGTTTTGTTcgccgc                    <  1:13186766/34‑1 (MQ=255)
                aCGTCGGGCCGCCGAATGGGGGGTTTTTTcgccgc                    >  1:15065426/1‑35 (MQ=38)
                 cGTCGGGCCGCCGAATGGGGGTTTTGTTCGCCGCa                   <  1:3921149/35‑1 (MQ=255)
                 cGTCGGGCCGCCGAATGGGGGTTTTGTTCGCCGCa                   >  1:13769290/1‑35 (MQ=255)
                  gTCGGGCCGCCGAATGGGGGTTTTGTTCGCCGCAc                  <  1:6617737/35‑1 (MQ=255)
                  gTCGGGCCGCCGAATGGGGGTTTTGTTCGCCGCAc                  >  1:12739125/1‑35 (MQ=255)
                  gTCGGGCCGCCGAATGGGGGTTTTGTTCGCCGCAc                  <  1:3633637/35‑1 (MQ=255)
                  gTCGGGCCGCCGAATGGGGGGTTTGGTCGCCGCAc                  >  1:8238878/1‑35 (MQ=37)
                   tCGGGCCGCCGAATGGGGGTTTTGTTCGCCGCACt                 <  1:10886050/35‑1 (MQ=255)
                   tCGGGCCGCCGAATGGGGGTTTTGTTCGCCGCACt                 <  1:3774384/35‑1 (MQ=255)
                   tCGGGCCGCCGAATGGGGGTTTTGTTCGCCGCACt                 >  1:3719772/1‑35 (MQ=255)
                   tCGGGCCGCCGAATGGGGGTTTTGTTCGCCGCACt                 <  1:13963216/35‑1 (MQ=255)
                   tCGGGCCGCCGAATGGGGGTTTTGTTCGCCGCACt                 <  1:16372807/35‑1 (MQ=255)
                   tCGGGCCGCCGAATGGGGGGTTTGTTCGCCGCACt                 >  1:12668265/1‑35 (MQ=255)
                    cGGGCCGCCGAATGGGTGTTTTGTTCGCCGCACTg                >  1:14357366/1‑35 (MQ=255)
                    cGGGCCGCCGAATGGGGGTTTTGTTCGCCTCACTg                >  1:15761270/1‑35 (MQ=255)
                    cGGGCCGCCGAATGGGGGTTTTGTTCGCCGCACTg                <  1:12268103/35‑1 (MQ=255)
                    agggCCGCCGAATGGGGGTTTTGTTCGCCGCACTg                <  1:1654772/34‑1 (MQ=255)
                     gggCCGCCGAATGGGGGTTTTGTTCGCCGCACTGa               <  1:5609842/35‑1 (MQ=255)
                     gggCCGCCGAATGGGGGTTTTGTTCGCCGCACTGa               <  1:16120325/35‑1 (MQ=255)
                     gggCCGCCGAATGGGGGTTTTGTTCGCCGCACTGa               >  1:2120970/1‑35 (MQ=255)
                      ggCCGCCGAATGGGGGTTTTGTTCGCCGCACTGAc              <  1:14397521/35‑1 (MQ=255)
                      ggCCGCCGAATGGGGGTTTTGTTCGCCGCACTGAc              >  1:2464447/1‑35 (MQ=255)
                       gccgccGAATGGGGGTTTTGTTCGCCGCACTGAcc             <  1:19882425/35‑1 (MQ=255)
                       gccgccGAATGGGGGTTTTGTTCGCCGCACTGAcc             <  1:13555238/35‑1 (MQ=255)
                        ccgccgAATGGGGTTTTTTTTCGCCGCACTGACCa            >  1:1596208/1‑35 (MQ=37)
                        ccgccgAATGGGGGTTTTGTTCGCCGCACTGACCa            <  1:7656815/35‑1 (MQ=255)
                         cgccgAATGGGGGTTTTGTTCGCCGCACTGACCAc           <  1:5161641/35‑1 (MQ=255)
                         cgccgAATGGGGGTTTTGTTCGCCGCACTGACCAc           <  1:8522722/35‑1 (MQ=255)
                          gccgAATGTGGGTTTTGTTCGCCGCACTGACCACg          >  1:20441508/1‑35 (MQ=255)
                          gccgAATGGGGGTTTTGTTCGCCGCACTGACCACg          >  1:16192770/1‑35 (MQ=255)
                           tctaaTGGGGGTTTTGTTCGCCGCACTGACCACGc         <  1:3994464/32‑1 (MQ=255)
                           ccgAATGGGGGTTTTGTTCGCCGCACTGACCACGc         >  1:3151097/1‑35 (MQ=255)
                           ccgAATGGGGGTTTTGTTCGCCGCACTGACCACGc         <  1:10131756/35‑1 (MQ=255)
                           ccgAATGGGGGTTTTGTTCGCCGCACTGACCACGc         >  1:6320140/1‑35 (MQ=255)
                            cgAATGGGGGTTTTGTTCGCCGCACTGACCACGCt        >  1:3638978/1‑35 (MQ=255)
                             gAATGGGGGTTTTGTTCGCTGCACTGACCACGCtg       >  1:10411277/1‑35 (MQ=255)
                             gAATGGGGGTTTTGTTCGCCGCACTGACCACGCtg       >  1:5553648/1‑35 (MQ=255)
                             gAATGGGGGTTTTGTTCGCCGCACTGACCACGCtg       >  1:16060936/1‑35 (MQ=255)
                             gAATGGGGGTTTTGTTCGCCGCACTGACCACGCtg       >  1:19341797/1‑35 (MQ=255)
                             gAATGGGGGTTTTGTTCGCCGCACTGACCACGCtg       >  1:8741708/1‑35 (MQ=255)
                              aaTGGGGGTTTTGTTCGCCGCACTGACCACGCtgt      <  1:11052555/35‑1 (MQ=255)
                              aaTGGGGGTTTTGTTCGCCGCACTGACCACGCtgt      <  1:13879650/35‑1 (MQ=255)
                               atgGGGGTTTTGTTCGCCGCACTGACCACGCtgtg     >  1:15838230‑M2/4‑35 (MQ=255)
                               atgGGGGTTTTGTTCGCCGCACTGACCACGCtgtg     <  1:4121553‑M2/32‑1 (MQ=255)
                               atgGGGGTTTTGTTCGCCGCACTGACCACGCtgtg     >  1:18201691‑M2/4‑35 (MQ=255)
                               atgGGGGTTTTGTTCGCCGCACTGACCACGCtgtg     >  1:16979533‑M2/4‑35 (MQ=255)
                                tgGGGGTTTTGTTCGCCGCACTGACCACGCTGTGc    <  1:3352591‑M2/33‑1 (MQ=255)
                                  ggggTTTTGTTCGCCGCACTGACCACGCTGTGCAt  >  1:5711038/1‑35 (MQ=255)
                                  ggggTTTTGTTCGCCGCACTGACCACGCTGTGCAt  <  1:17560526/35‑1 (MQ=255)
                                  ggggTTTTGTTCGCCGCACTGACCACGCTGTGCAt  <  1:17389236/35‑1 (MQ=255)
                                  |                                  
TTTCGTTTTCGCCACAACGTCGGGCCGCCGAATGGGGGTTTTGTTCGCCGCACTGACCACGCTGTGCAT  >  REL606/2525693‑2525761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.