Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,739,541 | 0 | C→A | 2.5% | 0.9 ‑1.3 ‑0.2 | 246 | A24A (GCG→GCT) | hycF | formate hydrogenlyase complex iron‑sulfur protein |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (2/5): ref base (122/116): total (124/122) | ||||||||||
Fisher's exact test strand distribution p-value = 2.77e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.28e-01 |
Only 100 of 284 total aligned reads displayed.
TCTGCTCTGGCTTACCACGGAAGTTTTTATCAACCGCAATCGGCTCCAGCGGATAAGACGAGGTCGCCG > REL606/2739507‑2739575 | tCTGCTCTGGCTTACCACGGAAGGTTTTATCAAcc > 1:3534878/1‑35 (MQ=255) tCTGCTCTGGCTTACCACGGAAGGTTTTATCAAcc > 1:15837740/1‑35 (MQ=255) cTGCTCTGGCTTACCACGGAAGTTTTTATCAAccc > 1:5390782/1‑34 (MQ=255) cTGCTCTGGCTTACCACGGAAGTTTTTATCAACCg > 1:4846247/1‑35 (MQ=255) cTGCTCTGGCTTACCACGGAAGTTTTTATCAACCg < 1:16029968/35‑1 (MQ=255) cTGCTCTGGCTTACCACGGAAGTTTTTATCAACCg > 1:15157434/1‑35 (MQ=255) cTGCTCTGGCTTACCACGGAAGGTTTTATCAACCg > 1:18428400/1‑35 (MQ=255) ttctctGGCTTCCCACGGAAGTTTTTATCAACCGc < 1:16862682/33‑1 (MQ=37) tGCTCTGGCTTCCCACGGATGTTTTTATCAACCGc < 1:2966951/35‑1 (MQ=37) tGCTCTGGCTTACCACGGAAGGTTTTATCAACCGc > 1:8671453/1‑35 (MQ=255) gCTCTGGCTTACCACGGAAGTTTTTATCAACCGCa < 1:14759138/35‑1 (MQ=255) gCTCTGGCTTACCACGGAAGTTTTTATCAACCGCa > 1:15615493/1‑35 (MQ=255) gCTCTGGCTTACCACGGAAGTTTTTATCAACCGCa < 1:16763320/35‑1 (MQ=255) gCTCTGGCTTACCACGGAAGTTTTTATCAAACGCa < 1:7551489/35‑1 (MQ=255) ctctGGCTTACCGCGGAAGGTTTTATCAAACGCaa > 1:5849814/1‑35 (MQ=25) ctctGGCTTACCACGGAAGTTTTTATCAACCGCaa > 1:11917611/1‑35 (MQ=255) ctctGGCTTACCACGGAAGTTTTTATCAACCGCaa > 1:11464264/1‑35 (MQ=255) ctctGGCTTACCACGGAAGTTTTTATAAACCGCaa < 1:15337233/35‑1 (MQ=255) tctGGCTTACCACGTAAGTTTTTATCAACCGCAAt > 1:385425/1‑35 (MQ=255) tctGGCTTACCACGGAAGTTTTTATCAACCGCAAt < 1:2750811/35‑1 (MQ=255) tctGGCTTACCACGGAAGTTTTTATCAACCGCAAt < 1:16677355/35‑1 (MQ=255) ctGGCTTTCCACGGAAGTTTTTATCAACCGCAATc < 1:14864426/35‑1 (MQ=255) ctGGCTTACCACGGAAGTTTTTATCAACCGCAATc < 1:5648678/35‑1 (MQ=255) ctGGCTTACCACGGAAGTTTTTATCAACCGCAATc > 1:16516936/1‑35 (MQ=255) ctGGCTTACCACGGAAGGTTTTATCCACCGCAATc > 1:17115612/1‑35 (MQ=37) tGGCTTACCACGTAAGTTTTTATCAACCGCAATCg > 1:16212971/1‑35 (MQ=255) tGGCTTACCACGGAAGTTTTTATCAACCGCAATCg > 1:15477794/1‑35 (MQ=255) tGGCTTACCACGGAAGTTTTTATCAACCGCAATCg < 1:10595945/35‑1 (MQ=255) tGGCTTACCACGGAAGTTTTTATCAACCGCAATCg > 1:6490826/1‑35 (MQ=255) tGGCTTACCACGGAAGTTTTTATCAACCGCAATCg < 1:6594664/35‑1 (MQ=255) tGGCTTACCACGGAAGTTTTTATCAACCGCAATCg > 1:6650899/1‑35 (MQ=255) tGGCTTACCACGGAAGTTTTTATCAACCGCAATCg > 1:5203582/1‑35 (MQ=255) tGGCTTACCACGGAAGTTTTTATCAACCGCAATCg > 1:19261670/1‑35 (MQ=255) ggCTTACCACGGAAGTTTTTATCAACCGCAATCgg > 1:13400427/1‑35 (MQ=255) ggCTTACCACGGAAGTTTTTATCAACCGCAATCgg < 1:10232446/35‑1 (MQ=255) ggCTTACCACGGAAGTTTTTATCAACCGCAATCgg > 1:12649448/1‑35 (MQ=255) ggCTTACCACGGAAGTTTTTATCAACCGCAATCgg > 1:19928079/1‑35 (MQ=255) gCTTACCACGGAAGTTTTTATCAACCGCAATCGGc > 1:18282553/1‑35 (MQ=255) gCTTACCACGGAAGTTTTTATCAACCGCAATCGGc > 1:2058133/1‑35 (MQ=255) gCTTACCACGGAAGTTTTTATCAACCGCAATCGGc > 1:14921799/1‑35 (MQ=255) gCTTACCACGGAAGTTTTTATCAACCGCAATCGGc > 1:14178066/1‑35 (MQ=255) gCTTACCACGGAAGTTTTTATCAACCGCAATCGGc > 1:11737127/1‑35 (MQ=255) gCTTACCACGGAAGTTTTTATCAACCGCAATCGGc < 1:12120950/35‑1 (MQ=255) cTTACCACGGAAGTTTTTATCAACCGCAATCGGCt < 1:20147474/35‑1 (MQ=255) cTTACCACGGAAGTTTTTATCAACCGCAATCGGCt < 1:10110963/35‑1 (MQ=255) cTTACCACGGAAGTTTTTATCAACCGCAATCGGCt > 1:18115059/1‑35 (MQ=255) ttACCACGGAAGTTTTTATCAACCGCAATCGGCTc > 1:12382698/1‑35 (MQ=255) tACCACGGAAGTTTTTATCAACCGCCATCGGGTcc > 1:13866487/1‑35 (MQ=25) tACCACGGAAGTTTTTATCAACCGCAATCGGCTcc > 1:14338314/1‑35 (MQ=255) tACCACGGAAGTTTTTATCAACCGCAATCGGCTcc < 1:904319/35‑1 (MQ=255) aCCACGGAAGTTTTTATCAACCGCAATCGGCTCCa < 1:17333511/35‑1 (MQ=255) aCCACGGAAGTTTTTATCAACCGCAATCGGCTCCa < 1:4937875/35‑1 (MQ=255) aCCACGGAAGTTTTTATCAACCGCAATCGGCTCCa < 1:8486352/35‑1 (MQ=255) aCCACGGAAGTTTTTATCAACCGCAATCGGCTCCa < 1:3367445/35‑1 (MQ=255) ccACGGAAGTTTTTATCAACCGCAATCGGCTcccg > 1:3203843/1‑33 (MQ=255) ccACGGAAGTTTTTATCAACCGCAATCGGCTCCAg < 1:1269351/35‑1 (MQ=255) ccACGGAAGTTTTTATCAACCGCAATCGGCTCCAg < 1:5809602/35‑1 (MQ=255) ccACGGAAGGTTTTATCAACCGCAATCGGCTcccc > 1:5100195/1‑33 (MQ=37) cACGGAAGTTTTTATCAACCGCAATCGGCTCCAGc < 1:10783231/35‑1 (MQ=255) cACGGAAGTTTTTATCAACAGCAATCGGCTCCAGc < 1:4139531/35‑1 (MQ=255) cGGGAGTTGTTATCAACCGCAATCGGCTCCAGCgg < 1:3576005/35‑1 (MQ=37) cGGAAGTTTTTATCAACCGCAATCGGCTCCAGCgg < 1:3628587/35‑1 (MQ=255) cGGAAGTTTTTATCAACCGCAATCGGCTCCAGCgg < 1:291777/35‑1 (MQ=255) ggAAGTTTTTATCAACCGCAATCGGCTCCCGCggg > 1:6774777/1‑34 (MQ=255) ggAAGTTTTTATCAACCGCAATCGGCTCCAGCGGa < 1:13306552/35‑1 (MQ=255) gAAGTTTTTATCACCCGCAATCGGCTCCAGCGGAt < 1:16228760/35‑1 (MQ=255) gAAGTTTTTATCAACCGCAATCGGCTCCAGCGGAt > 1:630699/1‑35 (MQ=255) gAAGTTTTTATCAACCGCAATCGGCTCCAGCGGAt > 1:9839363/1‑35 (MQ=255) gAAGTTTTTATCAACCGCAATCGGCTCCAGCGGAt > 1:2476444/1‑35 (MQ=255) aaGTTTTTATCAACCGCAATCGGCTCCAGCGGATa > 1:11170534/1‑35 (MQ=255) aGTTTTTATCAACCGCAATCGGCTCCCGCGGGTaa > 1:7427172/1‑35 (MQ=37) aGTTTTTATCAACCGCAATCGGCTCCAGCGGATaa > 1:17756270/1‑35 (MQ=255) aGTTTTTATCAACCGCAATCGGCTCCAGCGGATaa < 1:17034624/35‑1 (MQ=255) gTTTTTATCAACCGCAATCGGCTCCAGCGGGTAAg > 1:13544645/1‑35 (MQ=255) gTTTTTATCAACCGCAATCGGCTCCAGCGGATAAg > 1:15737358/1‑35 (MQ=255) gTTTTTATCAACCGCAATCGGCTCCAGCGGATAAg < 1:18790602/35‑1 (MQ=255) gTTTTTATCAACCGCAATCGGCTCCAGCGGATAAg > 1:8304482/1‑35 (MQ=255) tttttATCAACCGCAATCGGCTCCAGCGGATAAGa > 1:20249683/1‑35 (MQ=255) tttttATCAACCGCAATCGGCTCCAGCGGATAAGa < 1:19530743/35‑1 (MQ=255) tttttATCAACCGCAATCGGCTCCAGCGGATAAGa < 1:5973958/35‑1 (MQ=255) ttttATCAACCGCAATCGGCTCCAGCGGATAAGAc > 1:7231650/1‑35 (MQ=255) tttATCAACCGCAATCGGCTCCAGCGGATAAGACg > 1:7922054/1‑35 (MQ=255) tttATCAACCGCAATCGGCTCCAGCGGATAAGACg > 1:10381830/1‑35 (MQ=255) tttATCAACCGCAATCGGCTCCAGCGGATAAGACg < 1:9291085/35‑1 (MQ=255) tttATCAACCGCAATCGGCTCCAGCGGATAAGACg < 1:10033720/35‑1 (MQ=255) ttATCAACCGCAATCGGCTCCAGCGGATAAGACGa > 1:17212367/1‑35 (MQ=255) ttATCAACCGCAATCGGCTCCAGCGGATAAGACGa < 1:17839137/35‑1 (MQ=255) ttATCAACCGCAATCGGCTCCAGCGGATAAGACGa < 1:4357858/35‑1 (MQ=255) aTCAACCGCAATCGGCTCCAGCGGATAAGACGAgg > 1:12535550/1‑35 (MQ=255) aTCAACCGCAATCGGCTCCAGCGGATAAGACGAgg < 1:10348707/35‑1 (MQ=255) aTCAACCGCAATCGGCTCCAGCGGATAAGACGAgg < 1:9579657/35‑1 (MQ=255) cAACAGCAATCGGCTCCAGCGGATAAGACGAGGTc < 1:12972887/35‑1 (MQ=255) aaCCGCAATCGGCTCCAGCGGATAAGACGAGGTCg < 1:10993032/35‑1 (MQ=255) aCCGCAATCGGCTCCAGCGGATAAGACGAGGTCGc < 1:14002210/35‑1 (MQ=255) aCCGCAATCGGCTCCAGCGGATAAGACGAGGTCGc < 1:8718628/35‑1 (MQ=255) aCCGCAATCGGCTCCAGCGGATAAGACGAGGTCGc < 1:2296249/35‑1 (MQ=255) aCCGCAATCGGCTCCAGCGGATAAGACGAGGGCGc > 1:3464561/1‑35 (MQ=255) ccGCAATCGTCTCCAGCGGATAAGACGAGGTCGcc > 1:18516840/1‑35 (MQ=255) ccGAAATCGGCTCCAGCGGATAAGACGAGGTCGcc < 1:7073443/35‑1 (MQ=255) ccGAAATCGGCTCCAGCGGATAAGACGAGGTCGcc < 1:17871952/35‑1 (MQ=255) | TCTGCTCTGGCTTACCACGGAAGTTTTTATCAACCGCAATCGGCTCCAGCGGATAAGACGAGGTCGCCG > REL606/2739507‑2739575 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |