New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1500892 =NA (NA)5 (0.060) 3/36 NT 12.2% coding (616/4224 nt) rhsE rhsE element core protein RshE
?REL606 = 1977657 48 (0.470)coding (181/1005 nt) yedY hypothetical protein

CGAAACGGTCTGCCAGCCCGGTAAGCACCCGGTAcggcgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1500925‑1500892
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCGGGGGCGGGTGGGCGATCGTTCCCTTTAAACCAGCT  <  REL606/1977657‑1977618
                                                                          
CGAAACGGTCTGCCAGCCCGGTAAGCACCCGGTAC                                         <  1:10089946/35‑1
CGAAACGGTCTGCCAGCCCGGTAAGCACCCGGTAC                                         <  1:12013986/35‑1
CGAAACGGTCTGCCAGCCCGGTAAGCACCCGGTAC                                         <  1:4801756/35‑1
CGAAACGGTCTGCCAGCCCGGTAAGCACCCGGTAC                                         <  1:3487501/35‑1
CGAAACGGTCTGCCAGCCCGGTAAGCACCCGGTAC                                         <  1:14675201/35‑1
 GAAGCGGTCTGCCAGCCCGGTAAGCACCCGGTACG                                        <  1:17933636/35‑1
 GAAACGGTCTGCCAGCCCGGTAAGCACCCGGTACG                                        >  1:9885083/1‑35
 GAAACGGTCTGCCAGCCCGGTAAGCACCCGGTACG                                        >  1:9479995/1‑35
 GAAACGGTCTGCCAGCCCGGTAAGCACCCGGTACG                                        <  1:9157540/35‑1
 GAAACGGTCTGCCAGCCCGGTAAGCACCCGGTACG                                        >  1:848565/1‑35
 GAAACGGTCTGCCAGCCCGGTAAGCACCCGGTACG                                        <  1:8125076/35‑1
 GAAACGGTCTGCCAGCCCGGTAAGCACCCGGTACG                                        >  1:7026132/1‑35
 GAAACGGTCTGCCAGCCCGGTAAGCACCCGGTACG                                        <  1:5595042/35‑1
 GAAACGGTCTGCCAGCCCGGTAAGCACCCGGTACG                                        <  1:17271040/35‑1
 GAAACGGTCTGCCAGCCCGGTAAGCAACCGGTACG                                        >  1:9925960/1‑35
  AAACGGTCTGCCAGCCCGGTAAGCACCCGGTACGG                                       >  1:9228907/1‑35
  AAACGGTCTGCCAGCCCGGTAAGCACCCGGTACGG                                       <  1:14083865/35‑1
  AAACGGTCTGCCAGCCCGGTAAGCACCCGGTACGG                                       <  1:9158137/35‑1
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGg                                      >  1:18675272/1‑34
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGC                                      <  1:19857865/35‑1
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGC                                      <  1:11282325/35‑1
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGC                                      <  1:12792917/35‑1
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGC                                      >  1:17759428/1‑35
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGC                                      >  1:13047564/1‑35
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGC                                      <  1:16744474/35‑1
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGC                                      >  1:11408079/1‑35
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGC                                      <  1:12658480/35‑1
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGC                                      <  1:57241/35‑1
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGC                                      >  1:15397990/1‑35
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGC                                      >  1:14554192/1‑35
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGC                                      >  1:13329229/1‑35
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGC                                      >  1:7561415/1‑35
   AACGGTCTGCCAGCCCGGTAAGCACCCGGTAAGGC                                      >  1:17514070/1‑35
    gCGGTCTGCCAGCCCGGTAAGCACCCGGTACGGCG                                     <  1:13186467/34‑1
    ACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGCG                                     >  1:11643327/1‑35
    ACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGCG                                     <  1:6694488/35‑1
    ACGGTCTGCCAGCCCGGTAAGCACCCGGTACGGCG                                     >  1:20309879/1‑35
     CGGTCGGCCAGCCCGGTAAGCACCCGGTACGGCGG                                    <  1:16442327/35‑1
      GGTCTGCCAGCCCTGTAAGCACCCGGTACGGCGGG                                   >  1:20409386/1‑35
      GGTCTGCCAGCCCGGTAAGCACCCGGTACGGCGGG                                   >  1:16134047/1‑35
      GGTCTGCCAGCCCGGTAAGCACCCGGTACGGCGGG                                   >  1:2302599/1‑35
      GGTCTGCCAGCCCGGTAAGCACCCGGTACGGCGGG                                   >  1:2494126/1‑35
      GGTCTGCCAGCCCGGTAAGCACCCGGTACGGCGGG                                   >  1:811841/1‑35
      GGTCTGCCAGCCCGGTAAGCACCCGGTACGGCGGG                                   >  1:9127478/1‑35
      GGTCTGCCAGCCCGGTAAGCACCCGGTACGGCGGG                                   >  1:11486651/1‑35
      GGTCTGCCAGCCCGGTAAGCACCCGGTACGGCGGG                                   >  1:4603775/1‑35
        TCTGCCAGCCCGGTAAGCACCCGGTACGGCGGGGG                                 >  1:11863092/1‑35
        TCTGCCAGCCCGGTAAGCACCCGGTACGGCGGGGG                                 >  1:8604085/1‑35
         CTGCCAGCCCGGTAAGCACCCGGTACGGCGGGGGg                                >  1:11069850/1‑34
         CTGCCAGCCCGGTAAGCACCCGGTACGGCGGGGGg                                >  1:9427694/1‑34
         CTGCCAGCCCGGTAAGCACCCGGCACGGCGGGGGg                                >  1:6093629/1‑34
           GCCAGCCCGGTAAGCACCCGGTACGGCGGGGGGGG                              >  1:16523565/1‑35
           GCCAGCCCGGTAAGCACCCGGTACGGCGGGGGGGG                              >  1:13077526/1‑35
            CCAGCCCGGTAAGCACCCGGTACGGCGGGCGCGGG                             >  1:7949247/1‑35
             CAGCCCGGTAAGCACCCGGTACGGCGGGGGGGGGg                            >  1:17415119/1‑34
                CCCGGTAAGCACCCGGTACGGCGGGGGCGGGGGGG                         >  1:9839778/1‑35
                                  CGGCGGGGGCGGGTGGGCGATCGTTCCCTTTAAAC       <  1:7733453/35‑1
                                   GGCGGGGGCGGGTGGGCGATCGTTCCCTTTAAACC      >  1:11994271/1‑35
                                   GGCGGGGGCGGGTGGGCGATCGTTCCCTTTAAACC      <  1:4962978/35‑1
                                    GCGGGGGCGGGTGGGCGATCGTTCCCTTTAAACCA     >  1:8352277/1‑35
                                    GCGGGGGCGGGTGGGCGATCGTTCCCTTTAAACCA     >  1:4264521/1‑35
                                    GCGGGGGCGGGTGGGCGATCGTTCCCTTTAAACCA     >  1:20179543/1‑35
                                    GCGGGGGCGGGTGGGCGATCGTTCCCTTTAAACCA     >  1:15310289/1‑35
                                     CGGGGGCGGGTGGGCGATCGTTCCCTTTAAACCAG    <  1:8545751/35‑1
                                     CGGGGGCGGGTGGGCGATCGTTCCCTTTAAACCAG    <  1:20435928/35‑1
                                     CGGGGGCGGGTGGGCGATCGTTCCCTTTAAACCAG    <  1:19983848/35‑1
                                     CGGGGGCGGGTGGGCGATCGTTCCCTTTAAACCAG    <  1:13271941/35‑1
                                      GGGGGCGGGTGGGCGATCGTTCCCTTTAAACCAGC   <  1:7292664/35‑1
                                      GGGGGCGGGTGGGCGATCGTTCCCTTTAAACCAGC   <  1:3749376/35‑1
                                      GGGGGCGGGTGGGCGATCGTTCCCTTTAAACCAGC   <  1:12695030/35‑1
                                      GGGGGCGGGTGGGCGATCGTTCCCTTTAAACCAGC   <  1:19848363/35‑1
                                      GGGGGCGGGTGGGCGATCGTTCCCTTTAAACAAGC   <  1:4912123/35‑1
                                       GGGGCGGGTGGGCGATCGTTCCCTTTAAACCAGCT  <  1:3147788/35‑1
                                       GGGGCGGGTGGGCGATCGTTCCCTTTAAACCAGCT  <  1:967420/35‑1
                                       GGGGCGGGTGGGCGATCGTTCCCTTTAAACCAGCT  >  1:10989171/1‑35
                                       GGGGCGGGGGGGCGATCGTTCCCTTTAAACCAGCT  >  1:5960754/1‑35
                                                                          
CGAAACGGTCTGCCAGCCCGGTAAGCACCCGGTAcggcgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1500925‑1500892
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCGGGGGCGGGTGGGCGATCGTTCCCTTTAAACCAGCT  <  REL606/1977657‑1977618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.