New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3579044 =7 (0.070)29 (0.320) 6/42 NT 37.4% intergenic (+703/‑174) gor/arsR glutathione reductase/DNA‑binding transcriptional repressor
?REL606 3912266 = 91 (1.010)intergenic (+46/‑94) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

CAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCA  >  REL606/3579010‑3579078
                                  |                                  
tcctcggttatgtttttaaggtcaaaaaaaacccc                                    <  1:15913581‑M1/1‑1 (MQ=255)
tcctcggttatgtttttaaggtcaaaaaaaacccc                                    <  1:5179373‑M1/1‑1 (MQ=255)
 cctcggttatgtttttaaggtcaaaaaaaagcccc                                   >  1:13115441‑M1/34‑35 (MQ=255)
 cctcggttatgtttttaaggtcaaaaaaaaccccc                                   >  1:13181208‑M1/34‑35 (MQ=255)
  ctcggttatgtttttaaggtcaaaaaaaacccCCg                                  >  1:3465158‑M1/33‑35 (MQ=255)
  ctcggttatgtttttaaggtcaaaaaaaacccCCg                                  <  1:7688306‑M1/3‑1 (MQ=255)
                    gaaaaaaaaaacccCCGACGCAAAGTCGGtttttt                >  1:10458309‑M1/15‑35 (MQ=255)
                      aaaaaaaaacccCCGACGCAAAGTCGGTTTTTTTa              >  1:2517252‑M1/13‑35 (MQ=255)
                      aaaaaaaaacccCCGACGCAAAGTCGGTTTTTTTa              >  1:1403928‑M1/13‑35 (MQ=255)
                      aaaaaaaaaaccCCGACGCAAAGTCGGTTTTTTTa              >  1:1295048‑M1/13‑35 (MQ=255)
                      aaaaaaaaaaccCCGACGCAAAGTCGGTTTTTTTa              >  1:20434416‑M1/13‑35 (MQ=255)
                      aaaaaaaaaaccCCGACGCAAAGTCGGTTTTTTTa              >  1:13735473‑M1/13‑35 (MQ=255)
                       aaaaaaaccccCCGACGCAAAGTCGGTTTTTTTAc             >  1:6647285‑M1/12‑35 (MQ=255)
                       aaaaaaaacccCCGACGCAAAGTCGGTTTTTTTAc             >  1:2636996‑M1/12‑35 (MQ=255)
                       aaaaaaaacccCCGACGCAAAGTCGGTTTTTTTAc             >  1:4203940‑M1/12‑35 (MQ=255)
                       aaaaaaaaaccCCGACGCAAAGTCGGTTTTTTTAc             >  1:5777297‑M1/12‑35 (MQ=255)
                        aaaaaaacccCCGACGCAAAGTCGGTTTTTTTaca            >  1:18016948‑M1/11‑34 (MQ=255)
                        aaaaaaacccCCGACGCAAAGTCGGTTTTTTTACg            >  1:4512638‑M1/11‑35 (MQ=255)
                        aaaaaaaaccCCGACGCAAAGTCGGTTTTTTTaca            >  1:17608776‑M1/11‑34 (MQ=255)
                        aaaaaaaaccCCGACGCAAAGTCGGTTTTTTTaca            >  1:10548250‑M1/11‑34 (MQ=255)
                        aaaaaaaaccCCGACGCAAAGTCGGTTTTTTTaca            >  1:5616394‑M1/11‑34 (MQ=255)
                        aaGTAAAAAACCGACGCAAAGTCGGGTTTTTTACg            >  1:3102453/1‑35 (MQ=12)
                        aaGTAAAAAACCGACGCAAAGTCGGGTTTTTTACg            >  1:3607322/1‑35 (MQ=12)
                         aagaaacccCCGACGCAAAGTCGGTTTTTTTACGt           >  1:20364417‑M1/10‑35 (MQ=255)
                         aaaaaacccCCGACGCAAAGTCGGTTTTTTtacat           >  1:14543029‑M1/10‑33 (MQ=255)
                         aaaaaaaccCCGACGCAAAGTCGGTTTTTTTACGt           >  1:3779109‑M1/10‑35 (MQ=255)
                         aaaaaaaccCCGACGCAAAGTCGGTTTTTTTACGt           >  1:17132352‑M1/10‑35 (MQ=255)
                         aaaaaaaccCCGACGCAAAGTCGGTTTTTTTACGt           >  1:19103346‑M1/10‑35 (MQ=255)
                         aGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGt           >  1:19721016/1‑35 (MQ=35)
                         aGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGt           >  1:9668752/1‑35 (MQ=35)
                          gTAAAAAACCGACGCAAAGTCGGTTTTTTTAAGTc          >  1:11060082/1‑35 (MQ=12)
                          aaaaacccCCGACGCAAAGTCGGTTTTTttacatc          >  1:16029394‑M1/9‑32 (MQ=255)
                          aaaaacccCCGACGCAAAGTCGGTTTTTttacatc          >  1:13668181‑M1/9‑32 (MQ=255)
                          aaaaacccCCGACGCAAAGTCGGTTTTTTTACGTc          >  1:3349282‑M1/9‑35 (MQ=255)
                          aaaaacccCCGACGCAAAGTCGGTTTTTTTACGTc          >  1:6332442‑M1/9‑35 (MQ=255)
                          aaaaaaccCCGACGCAAAGTCGGTTTTTTTACGTc          >  1:4465072‑M1/9‑35 (MQ=255)
                          aaaaaaccCCGACGCAAAGTCGGTTTTTTTACGTc          >  1:12803477‑M1/9‑35 (MQ=255)
                           tAAAAAACCGACGCAAAGTCGGTTTTTTTACGTcc         >  1:17758031/1‑35 (MQ=38)
                           aaaacccCCGACGCAAAGTCGGTTTTTTTACGTcc         >  1:7874944‑M1/8‑35 (MQ=255)
                           aaaacccCCGACGCAAAGTCGGTTTTTTTACGTcc         >  1:2228251‑M1/8‑35 (MQ=255)
                            aaacccCCGACGCAAAGTCGGTTTTTTTACGTCCt        >  1:13297866‑M1/7‑35 (MQ=255)
                            aaaaaaCCGACGCAAAGTCGGTTTTTTTACGTCCt        >  1:11609641/1‑35 (MQ=40)
                             aacccCCGACGCAAAGTCGGTTTTTTTACGTCCTg       >  1:10228574‑M1/6‑35 (MQ=255)
                             aacccCCGACGCAAAGTCGGTTTTTTTACGTCCTg       >  1:10391893‑M1/6‑35 (MQ=255)
                             aacccCCGACGCAAAGTCGGTTTTTTTACGTCCTg       >  1:22503‑M1/6‑35 (MQ=255)
                             aaaaaCCGACGCAAAGTCGGTTTTTTTACGTCCTg       >  1:955790/1‑35 (MQ=255)
                             aaaaaCCGACGCAAAGTCGGTTTTTTTACGTCCTg       >  1:15630214/1‑35 (MQ=255)
                              aaaaCCGACGCAAAGTCGGGTTTTTTACGTCCTGa      >  1:12263939/1‑35 (MQ=255)
                              aaaaCCGACGCAAAGTCCGTTTTTTTACGTCCTGa      >  1:7513972/1‑35 (MQ=255)
                               aaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGAt     >  1:17817550/1‑35 (MQ=255)
                               aaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGAt     >  1:1766054/1‑35 (MQ=255)
                                ccCCGACGCAAAGTCGGTTTTTTTACGTCCTGAtt    >  1:11958133‑M1/3‑35 (MQ=255)
                                ccCCGACGCAAAGTCGGTTTTTTTACGTCCTGAtt    >  1:12905958‑M1/3‑35 (MQ=255)
                                ccCCGACGCAAAGTCGGTTTTTTTACGTCCTGAtt    >  1:17621216‑M1/3‑35 (MQ=255)
                                ccCCGACGCAAAGTCGGTTTTTTTACGTCCTGAtt    >  1:17803365‑M1/3‑35 (MQ=255)
                                aaCCGACTCAAAGTCGGGTTTTTTACGTCCTGAtt    >  1:20141710/1‑35 (MQ=17)
                                 cCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTc   >  1:5650407‑M1/2‑35 (MQ=255)
                                 cCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTc   >  1:18850935‑M1/2‑35 (MQ=255)
                                 cCCGACGCAAAGTCGGTTTTTTTACGCCCTGATTc   >  1:18917529‑M1/2‑35 (MQ=255)
                                 aCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTc   >  1:9198566/1‑35 (MQ=255)
                                 aCCGACGCAAAGTCGGGTTTTTTACGTCCTGATTc   >  1:16881074/1‑35 (MQ=255)
                                 aCCGACGCAAAGTCGGGTTTTTTACGTCCTGATTc   >  1:588378/1‑35 (MQ=255)
                                  CCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCa  >  1:13851874‑M1/1‑35 (MQ=255)
                                  CCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCa  >  1:618078‑M1/1‑35 (MQ=255)
                                  CCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCa  >  1:11365532‑M1/1‑35 (MQ=255)
                                  CCGACGCAAAGTCGGGTTTTTTACGTCCTGATTCa  <  1:19252102‑M1/35‑1 (MQ=255)
                                  |                                  
CAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCA  >  REL606/3579010‑3579078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.