New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1587129 =65 (0.630)7 (0.090) 3/36 NT 12.3% coding (244/435 nt) marR DNA‑binding transcriptional repressor of multiple antibiotic resistance
?REL606 2696580 = 51 (0.660)coding (481/2145 nt) nrdE ribonucleotide‑diphosphate reductase alpha subunit

GCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1587167‑1587129
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagccACGCCAACATTCCTCAACTGCGGTAAGCAGCAGC  >  REL606/2696580‑2696613
                                                                         
GCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCC                                        >  1:14718970/1‑35
 CGCTTGTCATTCGGGTTCGGCAACCTTTCCCCCCA                                       <  1:17804606/35‑1
 CGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCA                                       >  1:404509/1‑35
 CGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCA                                       <  1:3331792/35‑1
 CGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCA                                       >  1:2804314/1‑35
 CGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCA                                       >  1:18461137/1‑35
 CGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCA                                       <  1:16274595/35‑1
  GCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAG                                      >  1:7508288/1‑35
  GCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAG                                      >  1:12261713/1‑35
  GCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAG                                      >  1:18808353/1‑35
   caTGTCATTCGGGTTCGGCAACCTTTCCACCCAGC                                     <  1:1601224/33‑1
   CTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGC                                     <  1:7139676/35‑1
   CTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGC                                     >  1:12389342/1‑35
    TTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC                                    <  1:9065164/35‑1
    TTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC                                    <  1:6382321/35‑1
    TTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC                                    <  1:2287841/35‑1
    TTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC                                    >  1:10052438/1‑35
    TTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC                                    >  1:10251789/1‑35
                         gTTTCCAGCCAGCCACGCCAACATTCCTCAACTGC               <  1:1708035/34‑1
                         CTTTCCACCCAGCCACGCCAACATTCCTCAACTGC               <  1:8965960/35‑1
                          cTTCCGCCCAGCCACGCCAACATTCCTCAACTGCG              <  1:16941114/34‑1
                          cTTCCACCCAGCCACGCCAACATTCCTCAACTGCG              <  1:3390100/34‑1
                          TTTCCACCCAGCCACGCCAACATTCCTCAACTGCG              <  1:3051399/35‑1
                           tttCACCCAGCCACGCCAACATTCCTCAACTGCGG             <  1:4653510/32‑1
                           tttCACCCAGCCACGCCAACATTCCTCAACTGCGG             <  1:1796549/32‑1
                           TTCCAGCCAGCCACGCCAACATTCCTCAACTGCGG             <  1:12331768/35‑1
                           TTCCACCCAGCCACGCCAACATTCCTCAACTGCGG             <  1:16847028/35‑1
                            TCCACCCAGCCACGCCAACATTCCTCAACTGCGGT            <  1:4554814/35‑1
                            TCCACCCAGCCACGCCAACATTCCTCAACTGCGGT            <  1:15557753/35‑1
                             CCACCCAGCCACGCCAACATTCCTCAACTGCGGTA           <  1:2896823/35‑1
                             CCACCCAGCCACGCCAACATTCCTCAACTGCGGTA           <  1:4165843/35‑1
                              CACCCAGCCACGCCAACATTCCTCAACTGCGGTAA          <  1:8977748/35‑1
                              CACCCAGCCACGCCAACATTCCTCAACTGCGGTAA          <  1:13846632/35‑1
                               ACCCAGCCACGCCAACATTCCTCAACTGCGGTAAG         <  1:471338/35‑1
                                CCCAGCCACGCCAACATTCCTCAACTGCGGTAAGC        <  1:10736242/35‑1
                                CCCAGCCACGCCAACATTCCTCAACTGCGGTAAGC        <  1:6177876/35‑1
                                CCCAGCCACGCCAACATTCCTCAACTGCCGTAAGC        <  1:12697658/35‑1
                                 CCAGCCACGCCAACATTCCTCAACTGCGGTAAGCN       <  1:15732409/35‑1
                                 CCAGCCACGCCAACATTCCTCAACTGCGGTAAGCA       <  1:6435942/35‑1
                                 CCAGCCACGCCAACATTCCTCAACTGCGGTAAGCA       <  1:14073691/35‑1
                                 CCAGCCACGCCAACATTCCTCAACTGCGGTAAGCA       <  1:12441941/35‑1
                                  CAGCCACGCCAACATTCTTCAACTGCGGTAAGCAG      >  1:7843154/1‑35
                                  CAGCCACGCCAACATTCCTCAACTGCGGTAAGCAG      >  1:9511675/1‑35
                                  CAGCCACGCCAACATTCCTCAACTGCGGTAAGCAG      >  1:4482718/1‑35
                                  CAGCCACGCCAACATTCCTCAACTGCGGTAAGCAG      <  1:3964350/35‑1
                                  CAGCCACGCCAACATTCCTCAACTGCGGTAAGCAG      <  1:3158460/35‑1
                                  CAGCCACGCCAACATTCCTCAACTGCGGTAAGCAG      >  1:15906719/1‑35
                                    GCCACGCCAACATTCCTCAACTGCGTTAAGCAGCA    >  1:20065600/1‑35
                                    GCCACGCCAACATTCCTCAACTGCGGTAAGCAGCA    <  1:12938985/35‑1
                                    GCCACGCCAACATTCCTCAACTGCGGTAAGCAGCA    <  1:7426445/35‑1
                                    GCCACGCCAACATTCCTCAACTGCGGTAAGCAGCA    >  1:13568896/1‑35
                                    GCCACGCCAACATTCCTCAACTGCGGTAAGCAGCA    <  1:8057963/35‑1
                                    GCCACGCCAACATTCCTCAACTGCGGTAAGCAGCA    <  1:8376519/35‑1
                                    GCCACGCCAACATTCCTCAACTGCGGTAAGCAGCA    <  1:9380835/35‑1
                                     CCACGCCAACATTCCTCAACTGCGGTAAGCAGCAG   <  1:2143897/35‑1
                                     CCACGCCAACATTCCTCAACTGCGGTAAGCAGCAG   >  1:20361811/1‑35
                                      CACGCCAACATTCCTCAACTGCTGTAAGCAGCAGC  >  1:17653050/1‑35
                                      CACGCCAACATTCCTCAACTGCGGTAAGCAGCAGC  <  1:3679970/35‑1
                                      CACCCCAACATTCCTCAACTGCGGTAAGCAGCAGC  <  1:4163973/35‑1
                                                                         
GCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1587167‑1587129
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagccACGCCAACATTCCTCAACTGCGGTAAGCAGCAGC  >  REL606/2696580‑2696613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.