New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1544434 =52 (0.510)6 (0.060) 4/46 NT 10.0% coding (7/1536 nt) xasA predicted glutamate:gamma‑aminobutyric acid antiporter
?REL606 = 2047872 58 (0.590)coding (1256/1395 nt) wcaM predicted colanic acid biosynthesis protein

GACAGGAATACCGTTTTAGGGGGATAATATGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1544468‑1544434
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA  <  REL606/2047872‑2047839
                                                                     
GACAGGAATACCGTTTTAGGGTGATAATATGGCTA                                    >  1:14637318/1‑35
GACAGGAATACCGTTTTAGGGTGATAATATGGCTA                                    >  1:16836517/1‑35
GACAGGAATACCGTTTTAGGGGGATAATATGGCTA                                    >  1:7950048/1‑35
GACAGGAATACCGTTTTAGGGGGATAATATGGCTA                                    >  1:6259154/1‑35
GACAGGAATACCGTTTTAGGGGGATAATATGGCTA                                    >  1:4901005/1‑35
GACAGGAATACCGTTTTAGGGGGATAATATGGCTA                                    >  1:13599226/1‑35
GACAGGAATACCGTTTTAGGGGGATAATATGGCTA                                    >  1:14680106/1‑35
  CAGGAATACCGTTTTAGGGGGATAATATGGCTAAA                                  >  1:7324920/1‑35
   AGGAATACCGTTTTAGGGGGATAATATGGCTAAAA                                 >  1:14180048/1‑35
    GGAATACCGTTTTAGGGGGATAATATGGCTAAAAc                                >  1:18057194/1‑34
    GGAATACCGTTTTAGGGGGATAATATGGCTAAAAA                                >  1:2178936/1‑35
     GAATACCGTTTTAGGGGGATAATATGGCTAAAAca                               >  1:16183324/1‑33
     GAATACCGTTTTAGGGGGATAATATGGCTAAAAca                               >  1:19918918/1‑33
     GAATACCGTTTTAGGGGGATAATATGGCTAAAAca                               >  1:13186541/1‑33
      AATACCGTTTTAGGGGGATAATATGGCTAAAAAAG                              >  1:20066751/1‑35
       ATACCGTTTTAGGGGGATAATATGGCTAAAACAGA                             >  1:2886619/1‑35
        TACCGTTTTAGGGGGATAATATGGCTAAAAAAGAA                            >  1:3621773/1‑35
         ACCGTTTTTGGGGGATAATATGGCTAAAAAAGAAA                           >  1:4786350/1‑35
         ACCGTTTTAGGGGGATAATATGGCTAAAACAGAAc                           >  1:15152720/1‑34
         ACCGTTTTAGGGGGATAATATGGCTAAAAAAGAAc                           >  1:15838269/1‑34
                                  AAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA  <  1:19404331/35‑1
                                  AAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA  >  1:3672904/1‑35
                                  AAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA  <  1:13271622/35‑1
                                  AAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA  >  1:13090731/1‑35
                                  AAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA  >  1:10124884/1‑35
                                                                     
GACAGGAATACCGTTTTAGGGGGATAATATGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1544468‑1544434
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA  <  REL606/2047872‑2047839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.