New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2064681 =76 (0.740)9 (0.120) 3/36 NT 12.3% coding (596/1218 nt) wcaC predicted glycosyl transferase
?REL606 4179328 = 71 (0.920)coding (213/591 nt) yjaG hypothetical protein

Only 100 of 174 total aligned reads displayed.

ACCGTACAGGCTATTGAAAGCGTCAGCCACATGCTGGCTGGGGGAAATAAACTGACAGCCCAGCGCCAG  >  REL606/2064647‑2064715
                                   |                                  
cccGTACAGGCTATTGAAAGCGTCAGCCACATgct                                    <  1:12170670/34‑1 (MQ=255)
aCCGTACAGGCTATTGAAAGCGTCAGCCACATgct                                    <  1:15472903/35‑1 (MQ=255)
 ggctgaaggaatcgcttcttcaaatttctccagtt                                    >  1:10955647‑M1/35‑35 (MQ=255)
 ggctgaaggaatcgcttcttcaaatttctccagtt                                    <  1:280647‑M1/1‑1 (MQ=255)
 ggctgaaggaatcgcttcttcaaatttctccagtt                                    >  1:11301926‑M1/35‑35 (MQ=255)
 ggctgaaggaatcgcttcttcaaatttctccagtt                                    >  1:16079632‑M1/35‑35 (MQ=255)
 ccGTACAGGCTATTGAAAGCGTCAGCCACATgctg                                   <  1:20471612/35‑1 (MQ=255)
 ccGTACAGGCTATTGAAAGCGTCAGCCACATgctg                                   <  1:12944591/35‑1 (MQ=255)
 ccGTACAGGCTATTGAAAGCGTCAGCCACATgctg                                   <  1:12200092/35‑1 (MQ=255)
  gctgaaggaatcgcttcttcaaatttctccagtTg                                   <  1:5301391‑M1/2‑1 (MQ=255)
  gctgaaggaatcgcttcttcaaatttctccagtTg                                   >  1:20036637‑M1/34‑35 (MQ=255)
  gctgaaggaatcgcttcttcaaatttctccagtTg                                   >  1:1055468‑M1/34‑35 (MQ=255)
  gctgaaggaatcgcttcttcaaatttctccagtTg                                   <  1:12098640‑M1/2‑1 (MQ=255)
  cGTACAGGTTATTGAAAGCGTCAGCCACATgctgg                                  <  1:3507818/35‑1 (MQ=255)
   ctgaaggaatcgcttcttcaaatttctccagtTgg                                  >  1:7570409‑M1/33‑35 (MQ=255)
   ctgaaggaatcgcttcttcaaatttctccagtTgg                                  <  1:16083963‑M1/3‑1 (MQ=255)
   ctgaaggaatcgcttcttcaaatttctccagtTgg                                  >  1:7817306‑M1/33‑35 (MQ=255)
   ctgaaggaatcgcttcttcaaatttctccagtTgg                                  >  1:17170987‑M1/33‑35 (MQ=255)
   ctgaaggaatcgcttcttcaaatttctccagtTgg                                  <  1:8817181‑M1/3‑1 (MQ=255)
   ctgaaggaatcgcttcttcaaatttctccagtTgg                                  >  1:20375443‑M1/33‑35 (MQ=255)
    tgaaggaatcgcttcttcaaatttctccagtTGGc                                 <  1:15938525‑M1/4‑1 (MQ=255)
    tgaaggaatcgcttcttcaaatttctccagtTGGc                                 <  1:17582593‑M1/4‑1 (MQ=255)
    tgaaggaatcgcttcttcaaatttctccagtTGGc                                 >  1:18483334‑M1/32‑35 (MQ=255)
    tgaaggaatcgcttcttcaaatttctccagtTGGc                                 <  1:2694775‑M1/4‑1 (MQ=255)
    tgaaggaatcgcttcttcaaatttctccagtTGGc                                 >  1:14270‑M1/32‑35 (MQ=255)
    tgaaggaatcgcttcttcaaatttctccagtTGGc                                 >  1:8525387‑M1/32‑35 (MQ=255)
    tgaaggaatcgcttcttcaaatttctccagtTGGc                                 >  1:11788339‑M1/32‑35 (MQ=255)
    tgaaggaatcgcttcttcaaatttctccagtCGGc                                 <  1:14114589‑M1/4‑1 (MQ=255)
     gaaggaatcgcttcttcaaatttctccagtTGGCt                                >  1:13825741‑M1/31‑35 (MQ=255)
     gaaggaatcgcttcttcaaatttctccagtTGGCt                                >  1:20496995‑M1/31‑35 (MQ=255)
     gaaggaatcgcttcttcaaatttctccagtTGGCt                                <  1:1314631‑M1/5‑1 (MQ=255)
      aaggaatcgcttcttcaaatttctccagtTGGCTg                               >  1:19705683‑M1/30‑35 (MQ=255)
      aaggaatcgcttcttcaaatttctccagtTGGCTg                               <  1:13954966‑M1/6‑1 (MQ=255)
      aaggaatcgcttcttcaaatttctccagtTGGCTg                               <  1:19662071‑M1/6‑1 (MQ=255)
      aaggaatcgcttcttcaaatttctccagtTGGCTg                               <  1:18549264‑M1/6‑1 (MQ=255)
      aaggaatcgcttcttcaaatttctccagtTGGCTg                               <  1:3621379‑M1/6‑1 (MQ=255)
      aaggaatcgcttcttcaaatttctccagtTGGCTg                               >  1:1146000‑M1/30‑35 (MQ=255)
      aaggaatcgcttcttcaaatttctccagtTGGCTg                               >  1:12866114‑M1/30‑35 (MQ=255)
       aggaatcgcttcttcaaatttctccagtTGGCTgg                              <  1:2790721‑M1/7‑1 (MQ=255)
       aGGCTATTGAAAGCGTCAGCCACATGCTGGCTggg                             <  1:5467806/35‑1 (MQ=255)
       aGGCTATTGAAAGCGTCAGCCACATGCTGGCTggg                             <  1:10022048/35‑1 (MQ=255)
        ggaatcgcttcttcaaatttctccagtTGGCtggc                             <  1:15808008‑M1/8‑2 (MQ=255)
         gaatcgcttcttcaaatttctccagtTGGCTgggg                            <  1:20261244‑M1/9‑1 (MQ=255)
         gCTATTGAAAGCGTCAGCCACATGCTGGCTggggg                           >  1:616159/1‑35 (MQ=255)
         gCTATTGAAAGCGTCAGCCACATGCTGGCTggggg                           >  1:4440911/1‑35 (MQ=255)
         gCTATTGAAAGCGTCAGCCACATGCTGGCTggggg                           >  1:10381999/1‑35 (MQ=255)
         gCTATTGAAAGCGTCAGCCACATGCTGGCTggggg                           <  1:211329/35‑1 (MQ=255)
          cTATTGAAAGCGTCAGCCACATGCTGGCTgggggg                          >  1:2372539/1‑34 (MQ=255)
          cTATTGAAAGCGTCAGCCACATGCTGGCTGGGGGa                          <  1:7407775/35‑1 (MQ=255)
          aatcgcttcttcaaatttctccagtTGGCTggggg                           <  1:8125240‑M1/10‑1 (MQ=255)
          aatcgcttcttcaaatttctccagtTGGCTggggg                           <  1:4665525‑M1/10‑1 (MQ=255)
           tATTGAAAGCGTCAGCCACATGCTGGCTGGGGGaa                         <  1:18448326/35‑1 (MQ=255)
           tATTGAAAGCGTCAGCCACATGCTGGCTGGGGGaa                         <  1:19243191/35‑1 (MQ=255)
           atcgcttcttcaaatttctccagtTGGCtgggggg                          <  1:5995870‑M1/11‑2 (MQ=255)
           atcgcttcttcaaatttctccagtTGGCTGGGGGa                          <  1:11160266‑M1/11‑1 (MQ=255)
            tcgcttcttcaaatttctccagtTGGCTGGGGGaa                         <  1:4988885‑M1/12‑1 (MQ=255)
            aTTGAAAGCGTCAGCCACATGCCTGGCGGGGGGac                         >  1:20176640/1‑34 (MQ=21)
            aTTGAAAGCGTCAGCCACATGCTGGCTGGGGGaaa                        <  1:17621082/35‑1 (MQ=255)
            aTTGAAAGCGCCAGCCACATGCTGGCTGGGGGaaa                        <  1:18359911/35‑1 (MQ=255)
             ttGAAAGCGTCAGCCACATGCTGGCTGGGGGAAAt                       <  1:20102198/35‑1 (MQ=255)
              tGAAAGCGTCAGCCACATGCTGGCTGGGGGGAATa                      >  1:9006700/1‑35 (MQ=255)
              gcttcttcaaatttctccagtTGGCTGGGGGAAAt                       <  1:19456797‑M1/14‑1 (MQ=255)
               gAAAGCGTCAGCCACATGCTGGCTGGGGGGAATaa                     >  1:1114225/1‑35 (MQ=255)
               gAAAGCGTCAGCCACATGCTGGCTGGGGGGAATaa                     >  1:5795912/1‑35 (MQ=255)
                ttcttcaaatttctccagtTGGCTGGGGGAaattt                     <  1:16480663‑M1/16‑3 (MQ=255)
                aaaGCGTCAGCCACATGCTGGCTGGGGGAAATaaa                    <  1:10300009/35‑1 (MQ=255)
                aaaGCGTCAGCCACATGCTGGCTGGGGGAAATaaa                    <  1:541672/35‑1 (MQ=255)
                aaaGCGTCAGCCACATGCTGGCTGGGGGAAATaaa                    <  1:4724371/35‑1 (MQ=255)
                  aGCGTCAGCCACATGCTGGCTGGGGGAAATAAACt                  <  1:12922575/35‑1 (MQ=255)
                  aGCGTCAGCCACATGCTGGCTGGGGGAAATAAACt                  <  1:5688927/35‑1 (MQ=255)
                   gCGTCAGCCACATGCTGGCTGGGGGAAATAAACTg                 <  1:13703196/35‑1 (MQ=255)
                   gCGTCAGCCACATGCTGGCTGGGGGAAATAAACTg                 <  1:482363/35‑1 (MQ=255)
                   gCGTCAGCCACATGCTGGCTGGGGGAAATAAACTg                 <  1:20314105/35‑1 (MQ=255)
                   gCGCCAGCCACATGCTGGCTGGGGGAAATAAACTg                 <  1:18636109/35‑1 (MQ=255)
                    tgTCAGCCACATGCTGGCTGGGGGAAATAAACTGa                <  1:19472719/34‑1 (MQ=255)
                    cgccAGCCACATGCTGGCTGGGGGAAATAAACTGa                <  1:788555/32‑1 (MQ=255)
                    cGTCAGCCACATGCTGGCTGGGGGAAATAAACTGa                <  1:14224740/35‑1 (MQ=255)
                    cGTCAGCCACATGCTGGCTGGGGGAAATAAACTGa                >  1:1377784/1‑35 (MQ=255)
                     gTCAGCCACATGCTGGCTGGGGGAAATAAACTGAc               <  1:8786198/35‑1 (MQ=255)
                      tCAGCCACATGCTGGCTGGGGGAGATAAACTGACa              <  1:1161589/35‑1 (MQ=255)
                      tCAGCCACATGCTGGCTGGGGGAAATAAACTGACa              >  1:9268779/1‑35 (MQ=255)
                       cAGCCACATGCTGGCTGGGGGAAATAAACTGACAg             <  1:7680144/35‑1 (MQ=255)
                         gCCACATGCTTGCTGGGGGACATAAACTGACATcc           >  1:10163362/1‑35 (MQ=25)
                         gCCACATGCTGGCTGGGGGAAATAAACTGACAGcc           >  1:14413667/1‑35 (MQ=255)
                           cacaTGCTGGCTGGGGGAAATAAACTGACAGCCCa         <  1:15196868/35‑1 (MQ=255)
                           cacaTGCTGGCTGGGGGAAATAAACTGACAGCCCa         <  1:10054346/35‑1 (MQ=255)
                            acaTGCTGGCTGGGGGAAATAAACTGACAGCCCAg        <  1:11875594/35‑1 (MQ=255)
                            acaTGCTGGCTGGGGGAAATAAACTGACAGCCCAg        >  1:15044881/1‑35 (MQ=255)
                            acaTGCTGGCTGGGGGAAATAAACTGACAGCCCAg        <  1:19590400/35‑1 (MQ=255)
                            acaTGCTGGCTGGGGGAAATAAACTGACAGCCCAg        >  1:2863694/1‑35 (MQ=255)
                             caTGCTGGCTGGGGGAAATAAACTGACAGCCCAgc       >  1:12306273/1‑35 (MQ=255)
                             caTGCTGGCTGGGGGAAATAAACTGACAGCCCAgc       <  1:4713936/35‑1 (MQ=255)
                              ttGCGGGCTGGGGAAAATAAACTGACAGCCCAgcg      <  1:490010/34‑1 (MQ=37)
                              aTGCTGGCGGGGGGAAATAAACTGACAGCCCAgcg      <  1:6608766/35‑1 (MQ=255)
                               tGCTGGCTGGGGGAAATAAACTGACAGCCCAgcgc     <  1:4111240/35‑1 (MQ=255)
                               tGCTGGCTGGGGGAAATAAACTGACAGCCCAgcgc     >  1:15681260/1‑35 (MQ=255)
                                  ctggctggGGGAAATAAACTGACAGCCCAGCGCCa   >  1:5934652/1‑35 (MQ=255)
                                  ctggctggGGGAAATAAACTGACAGCCCAGCGCCa   >  1:13726429/1‑35 (MQ=255)
                                   TGGCTGGGGGAAATAAACTGACAGCCCAGCGCCAg  >  1:13531743‑M1/1‑35 (MQ=255)
                                   TGGCTGGGGGAAATAAACTGACAGCCCAGCGCCAg  <  1:8726165‑M1/35‑1 (MQ=255)
                                   |                                  
ACCGTACAGGCTATTGAAAGCGTCAGCCACATGCTGGCTGGGGGAAATAAACTGACAGCCCAGCGCCAG  >  REL606/2064647‑2064715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.