New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 5007864 (0.620)8 (0.100) 3/38 NT 17.8% coding (77/1332 nt) yaaU predicted transporter
?REL606 558256 = 23 (0.280)coding (193/294 nt) ECB_00516 conserved hypothetical protein

CTCTATTCACCGCCGCATTTTGCTGTGGGGAAGCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/50040‑50078
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggGGCGGTTTTGATA  >  REL606/558256‑558268
                                                    
CTCTATTCACCGCCGCATTTTGCTGTGGGGAAGCG                   >  1:13245326/1‑35
CTCTATTCACCGCCGCATTTTGCTGTGGGGAAGCG                   >  1:6279870/1‑35
 TCTATTCACCGCCGCATTTTGCTGTGGGGAAGCGG                  >  1:17469080/1‑35
 TCTATTCACCGCCGCATTTTGCTGTGGGGAAGCGG                  >  1:3653119/1‑35
  CTATTCACCGCCGCATTTTGCTGTGGGGAAGCTGT                 >  1:9372742/1‑35
   TATTCACCGCCGCATTTTGCTGCGGGGAAGCGGTG                >  1:18859852/1‑35
    ATTCACCGCCGCATTTTGCTGTGGGGAAGCGGTGG               >  1:4575987/1‑35
    ATTCACCGCCGCATTTTGCTGTGGGGAAGCGGGGG               >  1:18229280/1‑35
    ATTCACCGCCGCATTTTGCTGTGGGGAAGCGGGGG               >  1:19568410/1‑35
     TTCACCGCCGCATTTTGCTGTGGGGAAGCGGTGGG              >  1:12450493/1‑35
     TTCACCGCCGCATTTTGCTGTGGGGAAGCGGTGGG              >  1:4075849/1‑35
      TCACCGCCGCATTTTGCTGTGGGGAAGCGGTGGGc             >  1:19594496/1‑34
      TCACCGCCGCATTTTGCTGTGGGGAAGCGGTGGGc             >  1:2842859/1‑34
       CACCGCCGCATTTTGCTGTGGGGAAGCGGTGGGGC            >  1:20483604/1‑35
       CACCGCCGCATTTTGCTGTGGGGAAGCGGTGGGGC            >  1:15266721/1‑35
        ACCGCCGCATTTTGCTGTGGGGAAGCGGTGGGCCG           >  1:4781141/1‑35
        ACCGCCGCATTTTGCTGTGGGGAAGCGGTGGGCCG           >  1:8780214/1‑35
         CCGCCGCATTTTGCTGTGGGGAAGCGGTGGGGCcg          >  1:1797176/1‑33
         CCGCCGCATTTTGCTGTGGGGAAGCGGTGGGCCGG          >  1:11043474/1‑35
           GCCGCATTTTGCTGTGGGGAAGCGGTGGGGGGGTT        >  1:6452171/1‑35
            CCGCATTTTGCTGTGGGGAAGCGGTGGGGCGTTTT       >  1:14093888/1‑35
            CCGCATTTTGCTGTGGGGAAGCGGTGGGGCGGTTT       >  1:15668275/1‑35
            CCGCATTTTGCTGTGGGGAAGCGGTGGGGCGGTTT       >  1:5297900/1‑35
              GCATTTTGCTGTGGGGAAGCGGTGGGGCGGTTTTG     >  1:2032565/1‑35
              GCATTTTGCTGTGGGGAAGCGGTGGGGCGCTTTTG     >  1:7678452/1‑35
               CATTTTGCTGTGGGGAAGCGGTGGGGCGGTTTTGg    >  1:5376979/1‑34
                 TTTTGCTGTGGGGAAGCGGTGGGGCGGTTTTGggt  >  1:3011662/1‑32
                                                    
CTCTATTCACCGCCGCATTTTGCTGTGGGGAAGCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/50040‑50078
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggGGCGGTTTTGATA  >  REL606/558256‑558268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.