New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1087708 =57 (0.550)7 (0.090) 3/36 NT 11.8% coding (342/801 nt) ycdJ predicted hydrolase
?REL606 = 1145443 62 (0.800)intergenic (‑8/‑147) flgA/flgB flagellar basal body P‑ring biosynthesis protein A/flagellar basal‑body rod protein B

Only 100 of 182 total aligned reads displayed.

CGCCACGCTACGTTTTATTATCAGCATTTTCGCCCCCAGCCATTTCTACAACGTGAATTGTACCTGTCC  >  REL606/1145409‑1145477
                                  |                                  
cGCCACGCTACGTTTTATTATCAGCATTTTCGccc                                    >  1:248577/1‑35 (MQ=255)
 gCCACGCTACGTTTTATTATCAGCATTTTCGCCCc                                   <  1:19051556‑M2/35‑2 (MQ=255)
 gCCACGCTACGTTTTATTATCAGCATTTTCGCCCc                                   >  1:437840‑M2/1‑34 (MQ=255)
  ccACGCTACGTTTTATTATCAGCATTTTCGCCCCC                                  >  1:19930627‑M1/1‑35 (MQ=255)
  ccACGCTACGTTTTATTATCAGAATCTTCGcaccc                                  >  1:2917652/1‑35 (MQ=25)
   cACGCTACGTTTTATTATCAGCATTTTCGCCCCCA                                 <  1:18979981‑M1/35‑1 (MQ=255)
   cACGCTACGTTTTATTATCAGCATTTTCGCCCCCA                                 >  1:15692998‑M1/1‑35 (MQ=255)
    aCGCTACGTTTTATTATCAGCATTTTCGCCCCCAG                                >  1:6786419‑M1/1‑35 (MQ=255)
    aCGCTACGTTTTATTATCAGCATTTTCGCCCCCAG                                >  1:14460504‑M1/1‑35 (MQ=255)
    aCGCTACGTTTTATTATCAGCATTTTCGCCCCCAG                                <  1:1413090‑M1/35‑1 (MQ=255)
    aCGCTACGTTTTATTATCAGCATTTTCGACCCCAG                                <  1:5705020‑M1/35‑1 (MQ=255)
     cGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC                               >  1:175815‑M1/1‑35 (MQ=255)
     cGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC                               >  1:7414008‑M1/1‑35 (MQ=255)
     cGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC                               >  1:11239937‑M1/1‑35 (MQ=255)
     cGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC                               >  1:14149553‑M1/1‑35 (MQ=255)
      gCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC                              >  1:5609996‑M1/1‑35 (MQ=255)
      gCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC                              <  1:8742543‑M1/35‑1 (MQ=255)
      gCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC                              <  1:3832916‑M1/35‑1 (MQ=255)
       cTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA                             <  1:4074734‑M1/35‑1 (MQ=255)
       cTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA                             <  1:8261194‑M1/35‑1 (MQ=255)
        tACGTTTTATTATCAGCATTTTCGCCCCCAGCCAt                            >  1:4785092/1‑35 (MQ=255)
        tACGTTTTATTATCAGCATTTTCGCCCCCAGCCAt                            >  1:3522486/1‑35 (MQ=255)
        tACGTTTTATTATCAGCATTTTCGCCCCCAGCCAt                            >  1:9095988/1‑35 (MQ=255)
         aCGTTTTATTATCAGCATTTTCGCCCCCAGCCAtt                           >  1:19587935/1‑35 (MQ=255)
          cGTTTTATTATCAGCATTTTCGCCCCCAGCCAttt                          >  1:11619776/1‑35 (MQ=255)
          cGTTTTATTATCAGCATTTTCGCCCCCAGCCAttt                          >  1:7350873/1‑35 (MQ=255)
          cGTTTTATTATCAGCATTTTCGCCCCCAGCCAttt                          <  1:2623147/35‑1 (MQ=255)
             tttATTATCAGCATTTTCGCCCCCAGCCATTTCTa                       >  1:17671952/1‑35 (MQ=255)
             tttATTATCAGCATTTTACCCCCCAGCCATTTCTa                       <  1:11091590/35‑1 (MQ=38)
              ttattaTCAGCATTTTCGCCCCCAGCCATTTCTAc                      >  1:10232036/1‑35 (MQ=255)
               tattatCAGCATTTTCGCCCCCAGCCATTTCTACa                     >  1:12191821/1‑35 (MQ=255)
                attatCAGCATTTTCGCCCCCAGCCATTTCTACaa                    >  1:7772727/1‑35 (MQ=255)
                attatCAGCATTTTCGCCCCCAGCCATTTCTACaa                    >  1:13278833/1‑35 (MQ=255)
                 ttatCAGCATTTTCGCCCCCAGCCATTTCTACAAc                   >  1:7484073/1‑35 (MQ=255)
                 ttatCAGCATTTCCCCCCCCAGCCATTTCTACAAc                   <  1:9981475/35‑1 (MQ=38)
                  tatCAGCATTTTCGCCCCCAGCCATTTCTACAACg                  >  1:6595293/1‑35 (MQ=255)
                   atCAGCATTTTCGCCCCCAGCCATTTCTACAACGt                 >  1:20391625/1‑35 (MQ=255)
                   atCAGCATTTTCGCCCCCAGCCATTTCTACAACGt                 >  1:14915940/1‑35 (MQ=255)
                   atCAGCATTTTCCCCCCCAGCCATTTCTACAACGt                 <  1:12062374/35‑1 (MQ=255)
                   atCAACATTTCCCCCCCCAGCCATTTCTACAACGt                 <  1:3297743/35‑1 (MQ=25)
                    tCAGCATTTTCGCCCCCAGCAATTTCTACAACGTg                <  1:16938931/35‑1 (MQ=255)
                     cAGCATTTTCGCCCCCAGCCATTTCTACAACGTGa               >  1:19236409/1‑35 (MQ=255)
                     cAGCATTTTCGCCCCCAGCCATTTCTACAACGTGa               >  1:2317135/1‑35 (MQ=255)
                     cAGCATTTTCGCCCCCAGCCATTTCTACAACGTGa               >  1:3811512/1‑35 (MQ=255)
                     cAGCATTTTCGCCCCCAGCCATTTCTACAACGTGa               >  1:10660707/1‑35 (MQ=255)
                      aGCATTTTCGCCCCCAGCCATTTCTACAACGTGaa              >  1:13177172/1‑35 (MQ=255)
                       gCATTTTCGCCCCCAGCCATTTCTACAACGTGAAt             >  1:80549/1‑35 (MQ=255)
                        gcttttcgCCCCCAGCCAcaggtcgagatgaccag            <  1:2976972‑M1/33‑18 (MQ=255)
                        cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt            >  1:17343553/1‑35 (MQ=255)
                        cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt            >  1:10439596/1‑35 (MQ=255)
                        cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt            >  1:2062644/1‑35 (MQ=255)
                        cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt            >  1:452773/1‑35 (MQ=255)
                         tttttcCCCCCCAGCCAcaggtcgagatgaccagc           <  1:18138525‑M1/34‑19 (MQ=255)
                         aTTTTCGCCCCCAGCCATTTCTACAACGTGAATTg           >  1:12446847/1‑35 (MQ=255)
                         aTTTTCGCCCCCAGCCATTTCTACAACGTGAATTg           >  1:7930241/1‑35 (MQ=255)
                         aTTTTCGCCCCCAGCCATTTCTACAACGTGAATTg           >  1:9642530/1‑35 (MQ=255)
                         aTTTTCCCCCCCAGCCATTTCTACAACGTGAATTg           <  1:10011342/35‑1 (MQ=255)
                           tttCGCCCccagccgttaacgctgatcagcacagt         >  1:9477507‑M2/1‑8 (MQ=255)
                           tttCGCCCCCAGGCATTTCTACAACGTGAATTGTa         >  1:7679027/1‑35 (MQ=255)
                           tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa         <  1:6757330/35‑1 (MQ=255)
                           tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa         <  1:6395315/35‑1 (MQ=255)
                           tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa         >  1:20470900/1‑35 (MQ=255)
                           tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa         >  1:5705592/1‑35 (MQ=255)
                           tttCCCCCccagccgttaacgctgatcagcacagt         >  1:2198900‑M2/1‑8 (MQ=255)
                           tttCCCCCCCAGCCATTTCTACAACGTGAATTGTa         <  1:4965950/35‑1 (MQ=255)
                            ttCGCCCccagccgttaacgctgatcagcacagtt        >  1:1103353‑M2/1‑7 (MQ=255)
                            ttCGACCccagccgttaacgctgatcagcacagtt        >  1:5736915‑M2/1‑7 (MQ=255)
                            ctcGCCCCCAGCCAcaggtcgagatgaccagcggt        <  1:9844940‑M1/34‑22 (MQ=255)
                             tcccccccagcCAcaggtcgagatgaccagcggta       <  1:15258991‑M1/32‑23 (MQ=255)
                             tCGCCCCCAGCCATTTCTACAACGTGAATTGTAcc       >  1:18371799/1‑35 (MQ=255)
                             tCGCCCCCAGCCATTTCTACAACGTGAATTGTAcc       >  1:12225420/1‑35 (MQ=255)
                             ccccccccAGCCATTTCTACAACGTGAATTGTAcc       <  1:19434045/32‑1 (MQ=255)
                              cNCCCCCAGCCATTTCTACAACGTGAATTGTACCn      <  1:19891166/35‑1 (MQ=255)
                              cGTCCccagccgttaacgctgatcagcacagttac      >  1:17940490‑M2/1‑5 (MQ=255)
                              cGCTCCCAGCCAcaggtcgagatgaccagcggtaa      <  1:5267305‑M1/35‑24 (MQ=255)
                              cGCCCccagccgttaacgctgatcagcacagttac      >  1:5449062‑M2/1‑5 (MQ=255)
                              cGCCCCCAGCCATTTCTACAACGTGAATTGTACCt      >  1:14585632/1‑35 (MQ=255)
                              cGCCCCAAGCCATTTCTACAACGTGAATTGTACCt      <  1:3214409/35‑1 (MQ=255)
                               gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg     >  1:16648800/1‑35 (MQ=255)
                               gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg     >  1:14220466/1‑35 (MQ=255)
                               gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg     >  1:19956199/1‑35 (MQ=255)
                               gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg     <  1:9565394/35‑1 (MQ=255)
                               ccccccaGCCAcaggtcgagatgaccagcggtaaa     <  1:9341412‑M1/34‑25 (MQ=255)
                               ccccccAGCCATTTCTACAACGTGAATTGTACCTg     <  1:16884693/34‑1 (MQ=255)
                               ccccccAGCCATTTCTACAACGTGAATTGTACCTg     <  1:16408565/34‑1 (MQ=255)
                               acccccaGCCAcaggtcgagatgaccagcggtaaa     <  1:10148076‑M1/34‑25 (MQ=255)
                                gccccagccgttaacgctgatcagcacagttaccg    >  1:7605655‑M2/2‑3 (MQ=255)
                                cccccAGCCAcaggtcgagatgaccagcggtaaac    <  1:4234132‑M1/35‑26 (MQ=255)
                                cccccAGCCAcaggtcgagatgaccagcggtaaac    <  1:8867781‑M1/35‑26 (MQ=255)
                                cccccAGCCAcaggtcgagatgaccagcggtaaac    <  1:11272368‑M1/35‑26 (MQ=255)
                                cccccAGCCAcaggtcgagatgaccagcggtaaac    <  1:8329763‑M1/35‑26 (MQ=255)
                                cccccAGCCATTTCTACAACGTGAATTGTACCTGt    <  1:14931954/35‑1 (MQ=255)
                                accccagccgttaacgctgatcagcacagttaccg    >  1:12949014‑M2/2‑3 (MQ=255)
                                 ccccagccgttaacgctgatcagcacagttaccga   >  1:8461431‑M2/1‑2 (MQ=255)
                                 ccccagccgttaacgctgatcagcacagttaccga   >  1:16129658‑M2/1‑2 (MQ=255)
                                 ccccAGCCAcaggtcgagatgaccagcggtaaact   <  1:8356968‑M1/35‑27 (MQ=255)
                                 ccccAGCCAcaggtcgagatgaccagcggtaaact   <  1:16577309‑M1/35‑27 (MQ=255)
                                  cccAGCCATTTCTACAACGTGAATTGTACCTGTcc  <  1:3670443/35‑1 (MQ=255)
                                  cccAGCCATTTCTACAACGTGAATTGTACCTGTcc  <  1:2271009/35‑1 (MQ=255)
                                  cccAGCCATTTCTACAACGTGAATTGTACCTGTcc  <  1:2542095/35‑1 (MQ=255)
                                  |                                  
CGCCACGCTACGTTTTATTATCAGCATTTTCGCCCCCAGCCATTTCTACAACGTGAATTGTACCTGTCC  >  REL606/1145409‑1145477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.