New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 580468 = | 60 (0.580) | 16 (0.200) | 4/38 | NT | 16.7% | coding (852/3144 nt) | cusA | copper/silver efflux system, membrane component |
? | REL606 | 2715365 = | 112 (1.380) | coding (1506/2631 nt) | alaS | alanyl‑tRNA synthetase |
Only 100 of 104 total aligned reads displayed.
GCGTTTTTGCCGGATCGCAGGATCACCACCCCGCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/580506‑580468 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccGGATTCCGCATAGAATGGCGTTTGATCCAGCACG > REL606/2715365‑2715398 GCGTTTTTGCCGGATCGCAGGATCACCACCCCGCC > 1:3322377/1‑35 CGTTTTTGCCGGATCGCAGGATCACCACCCCGCCC < 1:14411079/35‑1 CGTTTTTGCCGGATCGCAGGATCACCACCCCGCCC > 1:2567175/1‑35 CGTTTTTGCCGGATCGCAGGATCACCACCCCGCCC < 1:3868782/35‑1 GTTTTTGCCGGATCGCAGGATCACCACCCCGCCCG < 1:14047524/35‑1 GTTTTTGCCGGATCGCAGGATCACCACCCCGCCCG > 1:13776547/1‑35 GTTTTTGCCGGATCGCAGGATCACCACCCCGCCCG > 1:15020279/1‑35 GTTTTTGCCGGATCGCAGGATCACCACCCCGCCCG > 1:2772341/1‑35 GTTTTTGCCGGATCGCAGGATCACCACCCCGCCCG > 1:7842417/1‑35 GTTTTTGCCGGATCGCAGGATCACCACCCCGCCCG > 1:1022295/1‑35 TTTTTGCCGGATCGCAGGATCACCACCCCGCCCGC > 1:492378/1‑35 TTTTTGCCGGATCGCAGGATCACCACCCCGCCCGC > 1:10560910/1‑35 TTTTGCCGGATCGCAGGATCACCACCCCGCCCGCC > 1:9027379/1‑35 gCCACCCTGCCCGCCGGATTCCGCATAGAATGGCG < 1:13744069/34‑1 CCACCCGGCCCGCCGGATTCCGCATAGAATGGCGT < 1:19216221/35‑1 CCACCCCGCCCGCCGGATTCCGCATAGAATGGCGT < 1:5311048/35‑1 CCACCCCGCCCGCCGGATTCCGCATAGAATGGCGT < 1:312772/35‑1 CCACCCCGCCCGCCGGATTCCGCATAGAATGGCGT < 1:9347955/35‑1 CACCCCGCCCGCCGGATTCCGCATAGAATGGCGTT < 1:1209694/35‑1 ACCCTGCCCGCCGGATTCCGCATAGAATGGCGTTT < 1:2946741/35‑1 ACCCCCCCCGCCGGATTCCGCATAGAATGGCGTTT < 1:15335802/35‑1 CCCTGCCCGCCGGATTCCGCATAGAATGGCGTTTG < 1:5933957/35‑1 CCCTGCCCGCCGGATTCCGCATAGAATGGCGTTTG < 1:9899918/35‑1 CCCCGCCCGCCGGATTCCGCATAGAATGGCGTTTG < 1:17645476/35‑1 CCCCGCCCGCCGGATTCCGCATAGAATGGCGTTTG < 1:15519318/35‑1 CCCCCCCCGCCGGATTCCGCATAGAATGGCGTTTG < 1:6849337/35‑1 CCCCCCCCGCCGGATTCCGCATAGAATGGCGTTTG < 1:5294180/35‑1 CCCCCCCCGCCGGATTCCGCATAGAATGGCGTTTG < 1:5227141/35‑1 CCCGCCCGCCGGATTCCGCATAGAATGGCGTTTGA < 1:1330127/35‑1 CCCGCCCGCCGGATTCCGCATAGAATGGCGTTTGA < 1:113830/35‑1 CCCCCCCGCCGGATTCCGCATAGAATGGCGTTTGA < 1:3898857/35‑1 ctcCCCGCCGGATTCCGCATAGAATGGCGTTTGAT < 1:19301730/32‑1 cgGCCCGCCGGATTCCGCATAGAATGGCGTTTGAT < 1:17388382/33‑1 cccCCCGCCGGATTCCGCATAGAATGGCGTTTGAT < 1:17487616/32‑1 cccCCCGCCGGATTCCGCATAGAATGGCGTTTGAT < 1:1224119/32‑1 cccCCCGCCGGATTCCGCATAGAATGGCGTTTGAT < 1:6024223/32‑1 CCGCCCGCCGGATTCCGCATAGAATGGCGTTTGAT < 1:16258749/35‑1 tcCCCGCCGGATTCCGCATAGAATGGCGTTTGATC < 1:12938853/33‑1 tcCCCGCCGGATTCCGCATAGAATGGCGTTTGATC < 1:20042682/33‑1 tGCCCGCCGGATTCCGCATAGAATGGCGTTTGATC < 1:20165830/34‑1 gcCCCGCCGGATTCCGCATAGAATGGCGTTTGATC < 1:18860445/33‑1 gGCCCGCCGGATTCCGCATAGAATGGCGTTTGATC < 1:11227907/34‑1 ccCCCGCCGGATTCCGCATAGAATGGCGTTTGATC < 1:4647489/33‑1 ccCCCGCCGGATTCCGCATAGAATGGCGTTTGATC < 1:5855969/33‑1 CGCCCGCCGGATTCCGCATAGAATGGCGTTTGATC < 1:6416229/35‑1 cCCCGCCGGATTCCGCATAGAATGGCGTTTGATCa < 1:18409497/34‑2 cCCCGCCGGATTCCGCATAGAATGGCGTTTGATCC < 1:17370844/34‑1 cCCCGCCGGATTCCGCATAGAATGGCGTTTGATCC < 1:97628/34‑1 cCCCGCCGGATTACGCATAGAATGGCGTTTGATCC < 1:10819188/34‑1 ccaGCCGGATTCCGCATAGAATGGCGTTTGATCCA < 1:18629294/32‑1 CCCGCCGGATTCCGCATAGAATGGCGTTTGATCCA < 1:15349871/35‑1 CCGCCGGATTCCGCATAGAATGGCGTTTGATCCAG > 1:12562830/1‑35 CCGCCGGATTCCGCATAGAATGGCGTTTGATCCAG < 1:12803509/35‑1 CCGCCGGATTCCGCATAGAATGGCGTTTGATCCAG > 1:9267522/1‑35 CCGCCGGATTCCGCATAGAATGGCGTTTGATCCAG < 1:10508322/35‑1 CCGCCGGATTCCGCATAGAATGGCGTTTGATCCAG < 1:11838784/35‑1 CCGCAGGATTCCGCATAGAATGGCGTTTGATCCAG < 1:17316052/35‑1 CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC < 1:6089920/35‑1 CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC < 1:12347838/35‑1 CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC < 1:384322/35‑1 CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC > 1:19577620/1‑35 CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC < 1:4587456/35‑1 CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC < 1:18646298/35‑1 CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC < 1:18453468/35‑1 CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC < 1:17465616/35‑1 CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC < 1:17020305/35‑1 CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC > 1:16977419/1‑35 CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC > 1:15984446/1‑35 CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC < 1:5800177/35‑1 GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA > 1:4879748/1‑35 GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA < 1:11887410/35‑1 GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA > 1:2151161/1‑35 GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA > 1:7995176/1‑35 GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA > 1:18736123/1‑35 GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA > 1:8455224/1‑35 GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA < 1:16651637/35‑1 GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA < 1:978399/35‑1 CCGGATTCCGCATCGAATGGCGTTTGATCCAGCAC > 1:13930881/1‑35 CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAN < 1:2180776/35‑1 CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC > 1:7474163/1‑35 CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC > 1:10418033/1‑35 CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC > 1:13980772/1‑35 CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC > 1:11904949/1‑35 CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC > 1:3812944/1‑35 CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC > 1:3568754/1‑35 CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC < 1:14881725/35‑1 CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC > 1:19936325/1‑35 CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC > 1:13181253/1‑35 CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC < 1:19316077/35‑1 CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG < 1:14603145/35‑1 CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG > 1:9328302/1‑35 CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG < 1:15108453/35‑1 CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG > 1:17458818/1‑35 CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG < 1:18008610/35‑1 CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG > 1:19030484/1‑35 CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG < 1:19415006/35‑1 CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG > 1:12526283/1‑35 CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG > 1:1250961/1‑35 CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG > 1:5502800/1‑35 CGGATGCCGCATAGAATGGCGTTTGATCCAGCACG < 1:8166824/35‑1 GCGTTTTTGCCGGATCGCAGGATCACCACCCCGCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/580506‑580468 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccGGATTCCGCATAGAATGGCGTTTGATCCAGCACG > REL606/2715365‑2715398 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |