New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 201768335 (0.340)14 (0.170) 3/38 NT 18.8% intergenic (‑178/+89) yeeF/yeeY predicted amino‑acid transporter/predicted DNA‑binding transcriptional regulator
?REL606 = 2919373 93 (1.140)intergenic (+6/+37) idi/lysS isopentenyl‑diphosphate delta‑isomerase/lysine tRNA synthetase, constitutive

GTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2017645‑2017683
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAAC  <  REL606/2919373‑2919340
                                                                         
GTTTGAAGCAAAAAATAACCGACGCTGATGAAACG                                        >  1:697839/1‑35
 TTTGAAGCAAAAAATAACCGACGCTGATGAAACGT                                       >  1:16845628/1‑35
 TTTGAAGCAAAAAATAACCGACGCTGATGAAACGT                                       >  1:15411166/1‑35
  TTGAAGCAAAAAATAACCGACGCTGATGAAACGTC                                      >  1:11198432/1‑35
  TTGAAGCAAAAAATAACCGACGCTGATGAAACGTC                                      >  1:4884183/1‑35
   TGAAGCAAAAAATAACCGACGCTGATGAAACGTCG                                     >  1:9767672/1‑35
   TGAAGCAAAAAATAACCGACGCTGATGAAACGTCG                                     >  1:1566639/1‑35
   TGAAGCAAAAAATAACCGACGCTGATGAAACGTCG                                     >  1:18642576/1‑35
   TGAAGCAAAAAATAACCGACGCTGATGAAACGTCG                                     >  1:17919033/1‑35
    GAAGCAAAAAATAACCGACGCTGATGAAACGTCGG                                    >  1:18311982/1‑35
     AAGCAAAAAATAACCGACGCTGATGAAACGTCGGG                                   >  1:10554303/1‑35
     AAGCAAAAAATAACCGACGCTGATGAAACGTCGGG                                   >  1:10668556/1‑35
      AGCAAAAAATAACCGACGCTTATGAAACGTCGGGG                                  >  1:2782853/1‑35
      AGCAAAAAATAACCGACGCTGATGAAACGTCGGGG                                  >  1:18456030/1‑35
      AGCAAAAAATAACCGACGCTGATGAAACGTCGGGG                                  >  1:14884115/1‑35
      AGCAAAAAATAACCGACGCTGATGAAACGTCGGGG                                  >  1:6752896/1‑35
       GCAAAAAATAACCGACGCTGATGAAACGTCGGGGT                                 >  1:13223610/1‑35
       GCAAAAAATAACCGACGCTGATGAAACGTCGGGGT                                 >  1:3748288/1‑35
        CAAAAAATAACCGACGCTGATGAAACGTCGGGGTT                                >  1:19347786/1‑35
         AAAAAATAACCGACGCTGATGAAACGTCGGGGTTT                               >  1:15289764/1‑35
         AAAAAATAACCGACGCTGATGAAACGTCGGGGTTT                               >  1:13783270/1‑35
           AAAATAACCGACGCTGATGAAACGTCGGGTTTTTg                             >  1:18455566/1‑34
           AAAATAACCGACGCTGATGAAACGTCGGGGTTTTT                             >  1:16352585/1‑35
           AAAATAACCGACGCTGATGAAACGTCGGGGTTTTT                             >  1:8859657/1‑35
           AAAATAACCGACGCTGATGAAACGTCGGGGTTTTT                             >  1:14657661/1‑35
            AAATAACCGACGCTGATGAAACGTCGGGGTTTTgt                            >  1:2611915/1‑33
            AAATAACCGACGCTGATGAAACGTCGGGGTTTTgt                            >  1:5508404/1‑33
            AAATAACCGACGCTGATGAAACGTCGGGGTTTTTg                            >  1:11931193/1‑34
            AAATAACCGACGCTGATGAAACGTCGGGGTTTTTT                            >  1:15369435/1‑35
            AAATAACCGACGCTGATGAAACGTCGGGGTTTTTT                            >  1:3466032/1‑35
             AATAACCGACGCTGATGAAACGTCGGGGTTTTgtc                           >  1:19596341/1‑32
             AATAACCGACGCTGATGAAACGTCGGGGTTTTTTt                           >  1:9333497/1‑34
              ATAACCGACGCTGATGAAACGTCGGGGTTTTTTta                          >  1:17641764/1‑33
               TAACCGACGCTGATGAAACGTCGGGGTTTTTTTAT                         >  1:3743737/1‑35
                 ACCGACGCTGATGAAACGTCGGGGTTTTTTTATTt                       >  1:9903151/1‑34
                                  ggCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA      <  1:2271413/33‑1
                                  GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA      <  1:18967905/35‑1
                                  GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA      <  1:278075/35‑1
                                  GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA      <  1:18209017/35‑1
                                  GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA      >  1:17968062/1‑35
                                  GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA      >  1:16438548/1‑35
                                  GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA      <  1:3834622/35‑1
                                  GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA      <  1:445198/35‑1
                                   TCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGAC     <  1:5917915/35‑1
                                   TCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGAC     <  1:9505922/35‑1
                                   TCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGAC     >  1:8672898/1‑35
                                   TCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGAC     <  1:18538335/35‑1
                                   TCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGAC     >  1:18722753/1‑35
                                    CGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACA    <  1:6864536/35‑1
                                    CGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACA    >  1:9081978/1‑35
                                    CGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACA    >  1:6147075/1‑35
                                    CGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACA    >  1:1509111/1‑35
                                    CGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACA    >  1:10309701/1‑35
                                     GGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAA   >  1:4083073/1‑35
                                     GGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAA   <  1:18486562/35‑1
                                     GGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAA   >  1:17716208/1‑35
                                     GGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAA   >  1:17449606/1‑35
                                     GGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAA   >  1:11531696/1‑35
                                     GGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAA   >  1:10960839/1‑35
                                      GGGTTTTTTAATTGTGCTGCGCGAAAGCNGACAAN  >  1:516685/1‑35
                                      GGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAAC  >  1:5411627/1‑35
                                      GGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAAC  >  1:18655976/1‑35
                                                                         
GTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2017645‑2017683
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAAC  <  REL606/2919373‑2919340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.