New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 13453 =80 (0.780)8 (0.080) 4/44 NT 10.6% coding (1293/1917 nt) dnaK molecular chaperone DnaK
?REL606 348289 = 62 (0.660)coding (475/1212 nt) mhpT predicted 3‑hydroxyphenylpropionic transporter

Only 100 of 171 total aligned reads displayed.

CCAAGCACAGCCAGGTGTTCTCTACCGCTGAAGACAACCAGTCTGCGGTAACCATCCATGTGCTGCAGG  >  REL606/13419‑13487
                                  |                                  
ccgtttgccatgctaagtttgcccccgcgaaaccc                                    <  1:10415504‑M1/1‑1 (MQ=255)
ccgtttgccatgctaagtttgcccccgcgaaaccc                                    >  1:6560769‑M1/35‑35 (MQ=255)
ccgtttgccatgctaagtttgcccccgcgaaaccc                                    >  1:17141439‑M1/35‑35 (MQ=255)
ccAAGCACAGCCAGGTGTTCTCTACCGCTGAAGAc                                    >  1:852692/1‑35 (MQ=255)
ccAAGCACAGCCAGGTGTTCTCTACCGCTGAAGAc                                    >  1:20181457/1‑35 (MQ=255)
 cgtttgccatgctaagtttgcccccgcgaaaccCa                                   <  1:16852242‑M1/2‑1 (MQ=255)
 cgtttgccatgctaagtttgcccccgcgaaaccCa                                   >  1:1965432‑M1/34‑35 (MQ=255)
 cgtttgccatgctaagtttgcccccgcgaaaccCa                                   <  1:11966106‑M1/2‑1 (MQ=255)
 cAAGCACAGCCAGGTGTTCTCTACCGCTGAAGACa                                   >  1:16425461/1‑35 (MQ=255)
 cAAGCACAGCCAGGTGTTCTCTACCGCTGAAGACa                                   >  1:2020732/1‑35 (MQ=255)
 cAAGCACAGCCAGGTGTTCTCTACCGCTGAAGACa                                   >  1:11388591/1‑35 (MQ=255)
  aaGCACAGCCAGGTGTTCTCTACCGCTGAAGACaa                                  >  1:7989390/1‑35 (MQ=255)
  aaGCACAGCCAGGTGTTCTCTACCGCTGAAGACaa                                  >  1:439859/1‑35 (MQ=255)
  aaGCACAGCCAGGTGTTCTCTACCGCTGAAGACaa                                  >  1:19034844/1‑35 (MQ=255)
   aGCACAGCCAGGTGTTCTCTACCGCTGAAGACAAc                                 >  1:2993313/1‑35 (MQ=255)
   aGCACAGCCAGGTGTTCTCTACCGCTGAAGACAAc                                 >  1:18187031/1‑35 (MQ=255)
   aGCACAGCCAGGTGTTCTCTACCGCTGAAGACAAc                                 >  1:6564511/1‑35 (MQ=255)
   aGCACAGCCAGGTGTTCTCTACCGCTGAAGACAAc                                 >  1:16780892/1‑35 (MQ=255)
    ccccaGCCAGGTGTTCTCTCCCGCTGAAGACAAcc                                <  1:7546912/32‑1 (MQ=37)
     cccaGCCAGGTGTTCTCTCCCGCTGAAGACAACCa                               <  1:68296/33‑1 (MQ=38)
     cccaGCCAGGTGTTCTCTACCGCTGAAGACAACCa                               <  1:12746943/33‑1 (MQ=255)
     cacaGCCAGGTGTTCTCTACCGCTGAAGACAACCa                               >  1:460595/1‑35 (MQ=255)
     cacaGCCAGGTGTTCTCTACCGCTGAAGACAACCa                               >  1:5924600/1‑35 (MQ=255)
      acaGCCAGGTGTTCTCTACCGCTGAAGACAACCAg                              >  1:13932722/1‑35 (MQ=255)
      acaGCCAGGTGTTCTCTACCGCTGAAGACAACCAg                              >  1:15111058/1‑35 (MQ=255)
      acaGCCAGGTGTTCTCTACCGCTGAAGACAACCAg                              >  1:9179917/1‑35 (MQ=255)
       caGCCAGGTGTTCTCTACCGCTGAAGACAACCAGt                             >  1:2619790/1‑35 (MQ=255)
       caGCCAGGTGTTCTCTACCGCTGAAGACAACCAGt                             >  1:14296235/1‑35 (MQ=255)
       caGCCAGGTGTTCTCTACCGCTGAAGACAACCAGt                             >  1:12213225/1‑35 (MQ=255)
       caGCCAGGTGTTCTCTACCGCTGAAGACAACCAGt                             >  1:4708098/1‑35 (MQ=255)
       caGCCAGGTGTTCTCTACCGCTGAAGACAACCAGt                             >  1:9167736/1‑35 (MQ=255)
        aGCCAGGTGTTCTCTACCGCTGAAGACAACCAGTc                            >  1:2051104/1‑35 (MQ=255)
        aGCCAGGTGTTCTCTACCGCTGAAGACAACCAGTc                            >  1:11319607/1‑35 (MQ=255)
        aGCCAGGTGTTCTCTACCGCTGAAGACAACCAGTc                            >  1:18291120/1‑35 (MQ=255)
        aGCCAGGTGTTCTCTACCGCTGAAGACAACCAGTc                            >  1:10117242/1‑35 (MQ=255)
         gCCAGGTGTTCTCTACCTCTGAAGACAACCAGTCt                           >  1:10837159/1‑35 (MQ=255)
         gCCAGGTGTTCTCTACCGCTGAAGACAACCAGTCt                           >  1:14711558/1‑35 (MQ=255)
         gCCAGGTGTTCTCTACCGCTGAAGACAACCAGTCt                           >  1:471322/1‑35 (MQ=255)
          ccAGGTGTTCTCTACCGCTGAAGACAACCAGTCTg                          >  1:8348024/1‑35 (MQ=255)
           catgtgtTCTCTACCGCTGAAGACAACCAGTCTGc                         >  1:4889588/4‑35 (MQ=255)
           cAGGTGTTCTCTACCGCTGAAGACAACCAGTCTGc                         >  1:8339375/1‑35 (MQ=255)
           cAGGTGTTCTCTACCGCTGAAGACAACCAGTCTGc                         >  1:20610842/1‑35 (MQ=255)
           cAGGTGTTCTCTACCGCTGAAGACAACCAGTCTGc                         >  1:11350706/1‑35 (MQ=255)
             ggTGTTCTCTACCGCTGAAGACAACCAGTCTGCga                       >  1:13085387/1‑34 (MQ=255)
              gtgtTCTCTACCGCTGAAGACAACCAGTCTGCGGt                      >  1:11648803/1‑35 (MQ=255)
              gtgtTCTCTACCGCTGAAGACAACCAGTCTGCGGt                      >  1:7701201/1‑35 (MQ=255)
               tgtTCTCTACCGCTGAAGACAACCAGTCTGCGGTa                     >  1:2507709/1‑35 (MQ=255)
                gtTCTCTACCGCTGAAGACAACCAGTCTGCGGTaa                    >  1:18789529/1‑35 (MQ=255)
                gtTCTCTACCGCTGAAGACAACCAGTCTGCGGTaa                    >  1:429198/1‑35 (MQ=255)
                 ttCTCTACCGCTGAAGACAACCAGTCTGCGGTAAc                   >  1:19540587/1‑35 (MQ=255)
                 ttCTCTACCGCTGAAGACAACCAGTCTGCGGTAAc                   >  1:2220603/1‑35 (MQ=255)
                   ctcccccgcgaaaccCAACCAGTCTGCGGTAAcca                 >  1:1791925‑M1/16‑35 (MQ=255)
                    tctACCGCTGAAGACAACCAGTCTGCGGTAAccat                >  1:3414732/1‑35 (MQ=255)
                    tctACCGCTGAAGACAACCAGTCTGCGGTAAccat                >  1:12522709/1‑35 (MQ=255)
                    tctACCGCTGAAGACAACCAGTCTGCGGTAAccat                >  1:11262972/1‑35 (MQ=255)
                     ctACCGCTGAAGACAACCAGTCTGCGGTAAccatc               >  1:9303767/1‑35 (MQ=255)
                     ctACCGCTGAAGACAACCAGTCTGCGGTAAccatc               >  1:18853976/1‑35 (MQ=255)
                     ctACCGCTGAAGACAACCAGTCTGCGGTAAccatc               >  1:7868314/1‑35 (MQ=255)
                     cccccgcgaaaccCAACCAGTCTGCGGTAAccatc               >  1:9066462‑M1/14‑35 (MQ=255)
                       aCCGCTGAAGACAACCAGTCTGCGGTAAccatcca             >  1:17698462/1‑35 (MQ=255)
                        ccGCTGAAGACAACCAGTCTGCGGTAAccatccat            >  1:312678/1‑35 (MQ=255)
                         cGCTGAAGACAACCAGTCTGCGGTAACCATCCAtg           >  1:13544489/1‑35 (MQ=255)
                          gcgaaaccCAACCAGTCTGCGGTAACCATCCAtgt          >  1:15325084‑M1/9‑35 (MQ=255)
                          gCTTAAGACAACCAGTCTGCGGTAACCATCCAtgt          >  1:6366541/1‑35 (MQ=255)
                          gCTGAAGACAACCAGTCTGCGGTAACCATCCAtgt          >  1:7120864/1‑35 (MQ=255)
                          gCTGAAGACAACCAGTCTGCGGTAACCATCCAtgt          >  1:13737590/1‑35 (MQ=255)
                          gCTGAAGACAACCAGTCTGCGGTAACCATCCAtgt          >  1:13510775/1‑35 (MQ=255)
                           cTGAAGACAACCAGTCTGCGGTAATCATCCAtgtg         >  1:16437808/1‑35 (MQ=255)
                           cTGAAGACAACCAGTCTGCGGTAACCATCCAtgtg         >  1:15239237/1‑35 (MQ=255)
                            tGAAGACAACCAGTCTGCTGTAACCATCCATGtgc        >  1:6086476/1‑35 (MQ=255)
                            tGAAGACAACCAGTCTGCGGTAACCATCCATGtgc        >  1:9823639/1‑35 (MQ=255)
                            tGAAGACAACCAGTCTGCGGTAACCATCCATGtgc        >  1:12032920/1‑35 (MQ=255)
                            aaacccCAACCAGTCTGCGGTAACCATCCATGtgc        >  1:9503648‑M1/7‑35 (MQ=255)
                             gacccCAACCAGTCTGCGGTAACCATCCATGtgct       >  1:8879837‑M1/6‑35 (MQ=255)
                             gaaccCAACCAGTCTGCGGTAACCATCCATGtgct       >  1:13714106‑M1/6‑35 (MQ=255)
                             gaaccCAACCAGTCTGCAGTAACCATCCATGtgct       >  1:14710110‑M1/6‑35 (MQ=255)
                             gAAGACAACCAGTCTGCGGTAACCATCCATGtgct       >  1:6081151/1‑35 (MQ=255)
                             gAAGACAACCAGTCTGCGGTAACCATCCATGtgct       >  1:12349470/1‑35 (MQ=255)
                             aaaccCAACCAGTCTGCGGTAACCATACATGtgct       >  1:2293986‑M1/6‑35 (MQ=255)
                              agccCAACCAGTCTGCGGTAACCATCCATGtgctg      >  1:1486835‑M1/5‑35 (MQ=255)
                              aaccCAACCAGTCTGCGGTAACCATCCATGtgctg      >  1:17167701‑M1/5‑35 (MQ=255)
                              aaccCAACCAGTCTGCGGTAACCATCCATGtgctg      >  1:19286405‑M1/5‑35 (MQ=255)
                              aaGACAACCAGTCTGCGGTAACCATCCATGtgctg      >  1:10065409/1‑35 (MQ=255)
                              aaGACAACCAGTCTGCGGTAACCATCCATGtgctg      >  1:15979606/1‑35 (MQ=255)
                              aaGACAACCAGTCTGCGGTAACCATCCATGtgctg      >  1:5736183/1‑35 (MQ=255)
                              aaGACAACCAGTCTGCGGTAACCATCCATGtgctg      >  1:5456422/1‑35 (MQ=255)
                              aaGACAACCAGTCTGCGGTAACCATCCATGtgctg      >  1:1688015/1‑35 (MQ=255)
                               accCAACCAGTCTGCGGTAACCATCCATGtgctgc     >  1:13332162‑M1/4‑35 (MQ=255)
                               aGACAACCAGTCTGCGGTAACCATCCATGtgctgc     >  1:16545047/1‑35 (MQ=255)
                               aGACAACCAGTCTGCGGTAACCATCCATGtgctgc     >  1:6994109/1‑35 (MQ=255)
                                gcCAACCAGTCTGCGGTAACCATCCATGTGCTGCa    >  1:3830305‑M1/3‑35 (MQ=255)
                                gACAACCAGTCTGCGGTAACCATCCATGTGCTGCa    >  1:3494364/1‑35 (MQ=255)
                                gACAAACAGTCTGCGGTAACCATCCATGTGCTGCa    <  1:6255451/35‑1 (MQ=255)
                                ccCAACCAGTCTGCGGTAACCATCCATGTGCTGCa    >  1:5738138‑M1/3‑35 (MQ=255)
                                 cCAACCAGTCTGCGGTAACCATCCATGTGCTGCAg   >  1:18672471‑M1/2‑35 (MQ=255)
                                 cCAACCAGTCTGCGGTAACCATCCATGTGCTGCAg   >  1:9127114‑M1/2‑35 (MQ=255)
                                  CACCCAGTCTGCGGTAACCATCCATGTGCTGCAgg  >  1:19950375‑M1/1‑35 (MQ=255)
                                  CACCCAGTCTGCGGTAACCATCCATGTGCTGCAgg  >  1:13754400‑M1/1‑35 (MQ=255)
                                  CAACCAGTCTGCGGTAACCATCCATGTGCTGCAgg  >  1:2568191‑M1/1‑35 (MQ=255)
                                  CAACCAGTCTGCGGTAACCATCCATGTGCTGCAgg  <  1:7080247‑M1/35‑1 (MQ=255)
                                  |                                  
CCAAGCACAGCCAGGTGTTCTCTACCGCTGAAGACAACCAGTCTGCGGTAACCATCCATGTGCTGCAGG  >  REL606/13419‑13487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.