New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 31308524 (0.230)4 (0.040) 3/48 NT 6.4% coding (272/951 nt) yahI predicted carbamate kinase‑like protein
?REL606 = 661462 93 (0.910)intergenic (+13/+47) ybeV/hscC Hsc56 co‑chaperone of HscC/Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription

ACTGTGTGGCAGATACGCAGGGCGGCATCGGCTA‑‑‑‑‑‑‑‑  >  REL606/313052‑313085
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAACA  <  REL606/661462‑661455
                                          
ACTGTGTGGCAGATACGCAGGGCTGCATCGGCTAA         >  1:2686087/1‑35
ACTGTGTGGCAGATACGCAGGGCGGCATCGGCTAA         >  1:2946702/1‑35
ACTGTGTGGCAGATACGCAGGGCGGCATCGGCTAA         >  1:5327017/1‑35
 CTGTGTGACAGATACGCAGGGCGGCATCGGCTAAA        >  1:1811277/1‑35
  TGTGTGGCAGATACGCAGGGCGGCATCGGGTAAAA       >  1:14153899/1‑35
  TGTGTGGCAGATACGCAGGGCGGCATCGGCTAAca       >  1:6851068/1‑33
  TGTGTGGCAGATACGCAGGGCGGCATCGGCTAAAA       >  1:1373953/1‑35
     GTGGCAGATACGCAGGGCGGCATCGGCTAAAAAAA    >  1:13624852/1‑35
      TGGCAGATACGCAGGGCGGCATCGGCTAAAAAAtc   >  1:4535506/1‑33
      TGGCAGATACGCAGGGCGGCATCGGCTAAAAAAAC   >  1:4488996/1‑35
       GGCAGATATGCAGGGCGGCATCGGCTAAAAAAACA  >  1:674702/1‑35
       GGCAGATACGCAGGGCGGCATCGGCTAAAAAAACc  >  1:5174974/1‑34
                                          
ACTGTGTGGCAGATACGCAGGGCGGCATCGGCTA‑‑‑‑‑‑‑‑  >  REL606/313052‑313085
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAACA  <  REL606/661462‑661455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.