New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1462269 | 59 (0.570) | 9 (0.100) | 8/42 | NT | 14.8% | intergenic (‑31/‑310) | mokB/trg | regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
? | REL606 | = 3894996 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region |
GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1462233‑1462269 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcTGTACTGACCCCAAAAAGTTGGACAGTTAA < REL606/3894996‑3894967 GTTCATTCGTTGGCCTCGGTTGATAGAAATATTGG > 1:18256611/1‑35 GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGG > 1:9143104/1‑35 GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGG < 1:3514879/35‑1 GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGG > 1:2613487/1‑35 GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGG > 1:19611984/1‑35 GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGG < 1:12539196/35‑1 TTCATTCGTTGGCCTCGGTTGATAGAAATATCGGT < 1:15533934/35‑1 TTCATTCGTTGGCCTCGGTTGATAGAAATATCGGT < 1:13506582/35‑1 TTCATTCGTTGGCCTCGGTTGATAGAAATATCGGT > 1:10897712/1‑35 TTCATTCGTTGGCCTCGGTTGATAGAAATATCGGT > 1:10294614/1‑35 TTCATTCGTTGGCCTCGGTTGATAGAAAGATCGGT < 1:6125798/35‑1 TTCATTCGTTGGCATCGGTTGATAGAAATATCGGT < 1:11011809/35‑1 TCATTCGTTGGCCTCGGTTGATAGAAATATCGGTC < 1:3162945/35‑1 TCATTCGTTGGCCTCGGTTGATAGAAATATCGGTC < 1:4180938/35‑1 CATTCGTTGGCCTCGGTTGATAGAAATATCGGgcg > 1:9924605/1‑32 CATTCGTTGGCCTCGGTTGATAGAAATATCGGTCT < 1:20361136/35‑1 ATTCGTTGGCCTCGGTTGATAGAAATATCGGTCTG > 1:10525253/1‑35 TTCGTTGGCCTCGGTTGATAGAAATATCGGTCTGT > 1:18084192/1‑35 CGTTGGCCTCGGTTGATAGAAATATCGGTCTGTAC < 1:6579525/35‑1 GGCCTCGGTTGATAGAAATATCGGTCTGTACTGAC < 1:10982498/35‑1 GCCTCGGTTGATAGAAATATCGGTCTGTACTGACC > 1:8002557/1‑35 CCTCGGTTGATAGAAATATCGGTCTGTACTGACCC > 1:996720/1‑35 CCTCGGTTGATAGAAATATCGGTCTGTACTGACCC > 1:336443/1‑35 CTCGGTTGATAGAAATATCGGTCTGTACTGACCCC < 1:19993431/35‑1 CGGTTGATAGAAATATCGGTCTGTACTGACCCCAA > 1:19164457/1‑35 TGATAGAAATATCGGTCTGTACTGACCCCAAAAAG < 1:10601260/35‑1 TGATAGAAATATCGGTCTGTACTGACCCCAAAAAG > 1:10662110/1‑35 AAATATCGGTCTGTACTGACCCCAAAAAGTTGGAC > 1:1041574/1‑35 TATCGGTCTGTACTGACCCCAAAAAGTTGGACAGT > 1:3924763/1‑35 TATCGGTCTGTACTGACCCCAAAAAGTTGGACAGT > 1:11353601/1‑35 cTCGGTTTGTACTGACCCCAAAAAGTTGGACAGTT < 1:8112808/34‑1 CGGCCTGTACTGACCCCAAAAAGTTGGACAGTTAA < 1:18484193/35‑1 GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1462233‑1462269 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcTGTACTGACCCCAAAAAGTTGGACAGTTAA < REL606/3894996‑3894967 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |