New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2682742 = | NA (NA) | 39 (0.540) | 6/34 | NT | 45.9% | noncoding (135/768 nt) | IS1 | repeat region |
? | REL606 | 2703961 = | 65 (0.630) | coding (794/1185 nt) | ygaX | predicted transporter |
Only 100 of 1001 total aligned reads displayed.
GTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATgtccggc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2682775‑2682742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATCGCACCAC > REL606/2703961‑2704001 GTTTTACTGCAGTGAGAGCAGAGATAGCGCTGATG > 1:20165365/1‑35 GTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATG < 1:19690813/35‑1 GTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATG < 1:6331937/35‑1 TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGT < 1:9591639/35‑1 TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGT < 1:9212446/35‑1 TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGT < 1:18870244/35‑1 TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGT < 1:2668487/35‑1 TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGT < 1:3180873/35‑1 TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGT < 1:14763885/35‑1 TTTACGGCATTGAGAGCAGAGATAGCGCTGATGTC > 1:4384078/1‑35 TTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTC < 1:1350334/35‑1 TTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTC < 1:2151114/35‑1 TTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTC < 1:19999962/35‑1 TTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTC < 1:11405910/35‑1 TTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTC < 1:7943048/35‑1 ttgCGGCAGTGAGAGCAGAGATAGCGCTGATGTCC < 1:1981759/32‑1 TTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC < 1:145902/35‑1 TTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC < 1:2378963/35‑1 TTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC < 1:17609408/35‑1 TTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC < 1:12097827/35‑1 TTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC < 1:11767572/35‑1 TTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC < 1:6819767/35‑1 TACTGCAGTGAGAGCAGAGATAGCGCTGATGTCCG > 1:20261612/1‑35 TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG < 1:3918143/35‑1 TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG < 1:17507411/35‑1 TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG < 1:4575262/35‑1 TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG < 1:5312411/35‑1 TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG < 1:19203118/35‑1 TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG < 1:15635566/35‑1 TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG < 1:8284598/35‑1 TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG < 1:9364015/35‑1 TACGGCAGTGAGAGCAGAGATAGCGCTGATGCCCG < 1:17823683/35‑1 TACGGAAGTGAGAGCAGAGATAGCGCTGATGTCCG < 1:16357327/35‑1 ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG < 1:17020357/35‑1 ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG < 1:17969095/35‑1 ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG < 1:7603366/35‑1 ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG < 1:20438254/35‑1 ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG < 1:4209706/35‑1 ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG < 1:11994934/35‑1 ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG < 1:1003461/35‑1 ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG < 1:16616617/35‑1 ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG < 1:16120466/35‑1 ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG < 1:10373069/35‑1 ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG < 1:12504595/35‑1 ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG < 1:14243196/35‑1 CGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGC < 1:5046777/35‑1 CGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGC < 1:5476480/35‑1 CGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGC < 1:2530046/35‑1 CGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGC < 1:15064565/35‑1 CGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGC < 1:8418304/35‑1 CGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGC < 1:9785153/35‑1 GGCAGTGAGAGCAGAGATAGCGCTGATTTCCGGCG > 1:6733724/1‑35 GGCAGTGAGAGCAGAGATAGCGCTGATGTTCGGCG > 1:11618546/1‑35 GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCG > 1:4738171/1‑35 GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCG < 1:4056423/35‑1 GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCG < 1:13659716/35‑1 GCAGTGAGAGCAGATATAGCGCTGATGTCCGGCGG > 1:8699941/1‑35 GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGG > 1:6160678/1‑35 GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGG > 1:1322046/1‑35 GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGG > 1:6467471/1‑35 GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGG > 1:8098579/1‑35 GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGG < 1:13393114/35‑1 GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGG < 1:18620661/35‑1 CAGTGAGAGCAGAGATAGCGCTGATGTCCGGGGGG > 1:1527124/1‑35 CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCTGG > 1:8920846/1‑35 CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGG > 1:14453269/1‑35 CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGG > 1:7089506/1‑35 CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGG > 1:7348549/1‑35 CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGG > 1:3411797/1‑35 CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGG > 1:15821963/1‑35 CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGG > 1:12821794/1‑35 AGTGATAGCAGAGATAGCGCTGATGTCCGGCGGGg > 1:16277681/1‑34 AGTGAGAGTAGAGATAGCGCTGATGTCCGGCGGGg > 1:18449499/1‑34 AGTGAGAGCAGAGATAGCGCTGATGTCCGGCTGGg > 1:17407505/1‑34 AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGatg < 1:19039509/35‑4 AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg > 1:11026704/1‑34 AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg > 1:596582/1‑34 AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg > 1:5652146/1‑34 AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg > 1:12322128/1‑34 AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg > 1:12999416/1‑34 AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg > 1:20588261/1‑34 AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg > 1:19453398/1‑34 GTGAGAGCAGAGATAGCGCTGATGTCCGGCGGcgc < 1:1023187/35‑4 GTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgg > 1:3733766/1‑33 GTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgg > 1:2976114/1‑33 GTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgg > 1:10592619/1‑33 GTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgc > 1:16024129/1‑33 GTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgc > 1:15468484/1‑33 TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGggt > 1:2791840/1‑32 TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGggt > 1:11158749/1‑32 TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGggt > 1:14042226/1‑32 TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGggt > 1:14901530/1‑32 TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgct > 1:7769455/1‑32 TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgct > 1:4910788/1‑32 TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgcg > 1:16792126/1‑32 AGCAGAGATAGCGCTGATGTCCGGCGGGGGGTTTT > 1:18150190/1‑35 AGCAGAGATAGCGCTGATGTCCGGCGGGGGGTTTT > 1:3565220/1‑35 CCGGCGGGCGGTTTTGCCGATAAGGGCAAATCGCA < 1:13883410/35‑1 CGGGCGGTTTTGCCGATAAGTGCAAATCGCACCAC > 1:17235887/1‑35 CGGGCGGTTTTGCCGATAAGGGCAAATCGCACCAC < 1:10846596/35‑1 GTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATgtccggc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2682775‑2682742 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATCGCACCAC > REL606/2703961‑2704001 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |