New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2703325 = | 45 (0.440) | 9 (0.120) | 3/36 | NT | 16.6% | coding (158/1185 nt) | ygaX | predicted transporter |
? | REL606 | = 4091236 | 57 (0.740) | coding (461/600 nt) | yiiQ | hypothetical protein |
AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2703364‑2703325 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGAAAAACAAACGTTATTACACCGAGACAGAAGG < REL606/4091236‑4091203 AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGC < 1:10842559/35‑1 AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGC < 1:18635233/35‑1 AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGC > 1:7394032/1‑35 AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGC > 1:21251/1‑35 AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGC > 1:19391953/1‑35 GAAACAGCAGACCTGCTGCATAGCCCAATTGCGCG < 1:15077122/35‑1 GAAACAGCAGACCTGCTGCATAGCCCAATTGCGCG > 1:13645163/1‑35 AAACAGCAGACCTGCTGCATAGCCCAATTGCGCGN < 1:17357548/35‑1 AAACAGCAGACCTGCTGCATAGCCCAATTGCGCGG < 1:4385732/35‑1 AAACAGCAGACCTGCTGCATAGCCCAATTGCGCGG > 1:8716262/1‑35 AAACAGCAGACCTGCTGCATAGCCCAATTGCGCGG < 1:3737733/35‑1 AAACAGCAGACCTGCTGCATAGCCCAATTGCGCGG < 1:3565814/35‑1 AACAGCAGACCTGCTGCATAGCCCAATTGCGCGGC < 1:19900430/35‑1 AACAGCAGACCTGCTGCATAGCCCAATTGCGCGGC < 1:4104184/35‑1 AACAGCAGACCTGCTGCATAGCCCAATTGCGCGGC < 1:6891735/35‑1 ACAGCAGACCTGCTGCATAGCCCAATTGCGCGGCG < 1:20236886/35‑1 CAGCAGACCTGCTGCATAGCCCAATTGCNNGGCGN > 1:17529239/1‑35 CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG > 1:19784084/1‑35 CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG > 1:19537623/1‑35 CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG > 1:5422512/1‑35 CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG < 1:16328165/35‑1 CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG > 1:11517563/1‑35 CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG > 1:8379071/1‑35 CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG > 1:12044465/1‑35 AGCAGACCTGCTGCATAGCCCAATTGCGCGGCGGG > 1:3575016/1‑35 AGCAGACCTGCTGCATAGCCCAATTGCGCGGCGGG > 1:15341698/1‑35 AGCAGACCTGCTGCATAGCCCAATTGCGCGGCGGG > 1:11415634/1‑35 AGCAGACCTGCTGCATAGCCCAATTGCGCGGCGGG > 1:7457816/1‑35 GCAGACCTTCTGCATAGCCCAATTGCGCGGCGGGG > 1:13756392/1‑35 GCAGACCTGCTGCATAGCCCAATTGCGCGGCGGGG > 1:14896042/1‑35 CAGACCTGCTGCATAGCCCAATTGCGCGGCGGGGg > 1:5827710/1‑34 CAGACCTGCTGCATAGCCCAATTGCGCGGCGGGGA > 1:18907095/1‑35 AGACCTGCTGCATAGCCCAATTGCGCGGCGGGcag > 1:7675640/1‑32 AGACCTGCTGCATAGCCCAATTGCGCGGCGGGGAg > 1:417878/1‑34 AGACCTGCTGCATAGCCCAATTGCGCGGCGGGGAg > 1:4416694/1‑34 AGACCTGCTGCATAGCCCAATTGCGCGGCGGGGAc > 1:11067706/1‑34 AGACCTGCTGCATAGCCCAATTGCGCGGCGGGGAA > 1:9107740/1‑35 AGACCTGCTGCATAGCCCAATTGCGCGGCGGGGAA > 1:19042449/1‑35 GACCTGCTGCATAGCCCAATTGCGCGGCGGGGGAA > 1:18843696/1‑35 GACCTGCTGCATAGCCCAATTGCGCGGCGGGGAAA > 1:6892417/1‑35 ACCTGCTGCATAGCCCAATTGCGCGGCGGGGAGAA > 1:10589290/1‑35 ACCTGCTGCATAGCCCAATTGCGCGGCGGGGACAA > 1:6527301/1‑35 CCTGCTGCATAGCCCAATTGCGCGGCGGGGAGAAA > 1:16149385/1‑35 CCTGCTGCATAGCCCAATTGCGCGGCGGGGACAAt > 1:12443344/1‑34 CCTGCTGCATAGCCCAATTGCGCGGCGGGGAAAAA > 1:8486668/1‑35 CTGCTGCATAGCCCAATTGCGCGGCGGGGACAAAa > 1:14116283/1‑34 TGCTGCATAGCCCAATTGCGCGGCGGGGAAAAAaa > 1:4480879/1‑33 TGCATAGCCCAATTGCGCGGCGGGGAAAAAAAAAa > 1:1472507/1‑34 TGCATAGCCCAATTGCGCGGCGGGGAAAAAAAAAC > 1:2861662/1‑35 CGGCGGGGAAAAACAAACGTTATTACACCGAGACA > 1:8294369/1‑35 GGCGTGGAAAAACAAACGTTATTACACCGAGACAG > 1:3290203/1‑35 GGCGGGGAAAAACAAACGTTATTACACCGAGACAG > 1:2862860/1‑35 gGGGGAAAAACAAACGTTATTACACCGAGACAGAA < 1:13341760/34‑1 CGGGGAAAAACAAACGTTATTACACCGAGACAGAA > 1:15153154/1‑35 CGGGGAAAAACAAACGTTATTACACCGAGACAGAA > 1:18177123/1‑35 GGGGAAAAACAAACGTTATTACACCGAGACAGAAG > 1:18512723/1‑35 GGGGAAAAACAAACGTTATTACACCGAGACAGAAG < 1:2755148/35‑1 GGGAAAACCAAACGTTATTACACCGAGACAGAAGG < 1:8689685/35‑1 GGGAAAAACAAACGTTATTACACCGAGACAGAAGG > 1:80193/1‑35 GGGAAAAACAAACGTTATTACACCGAGACAGAAGG < 1:8247661/35‑1 GGGAAAAACAAACGTTATTACACCGAGACAGAAGG > 1:15535478/1‑35 AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2703364‑2703325 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGAAAAACAAACGTTATTACACCGAGACAGAAGG < REL606/4091236‑4091203 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |