New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 246042115 (1.120)8 (0.080) 5/44 NT 10.0% coding (1833/2445 nt) fadE acyl‑CoA dehydrogenase
?REL606 503801 = 39 (0.410)coding (587/927 nt) ybbS DNA‑binding transcriptional activator of the allD operon

GCAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/246007‑246042
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG  >  REL606/503801‑503834
                                                                      
GCAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCC                                     <  1:15492063/35‑1
 CAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCC                                    <  1:7596714/35‑1
 CAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCC                                    >  1:20384331/1‑35
 CAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCC                                    <  1:18621455/35‑1
   GAGGCGAGGTAGAGCTGGCTTAAAATATCCCCCcg                                  >  1:20565719/1‑33
                      TTAAAATATCCCCCGCCGGAAAGCGCCGCAACTGC               <  1:4532657/35‑1
                       ttcAATATCCCCCGCCGGAAAGCGCCGCAACTGCG              <  1:18715818/32‑1
                       TAAAATATCCCCCGCCGGAAAGCGCCGCAACTGCG              <  1:9825066/35‑1
                        AAAATATCCCCCGCCGGAAAGCGCCGCAACTGCGC             <  1:18617922/35‑1
                         AAATATTCCCCGCCGGAAAGCGCCGCAACTGCGCT            <  1:1320790/35‑1
                            atTCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCT         <  1:9077650/33‑1
                            TATGCCCCGCCGGAAAGCGCCGCAACTGCGCTTCT         <  1:10516017/35‑1
                            TATCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCT         <  1:5570266/35‑1
                            TATCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCT         <  1:20147804/35‑1
                             tttCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTG        <  1:17339291/32‑1
                             ATCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTG        <  1:9326961/35‑1
                             ATCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTG        <  1:12868490/35‑1
                              tgaCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGT       <  1:12622066/32‑1
                              gCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGT       <  1:19944543/34‑1
                              TCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGT       <  1:9559301/35‑1
                              TCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGT       <  1:14956776/35‑1
                              TCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGT       <  1:14981556/35‑1
                              TCCCCCGCCGGAAAGCGCAGCAACTGCGCTTCTGT       <  1:13819715/35‑1
                               tCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTT      <  1:13312923/34‑1
                               CCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTT      <  1:17891805/35‑1
                               CCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTT      <  1:1106775/35‑1
                                gCCCGCCGGAAAGCGCAGCAACTGCGCTTCTGTTA     <  1:14516009/34‑1
                                CCCCGCCGGNAAGCGCCGCAACTGCGCTTCTGTTA     <  1:12319789/35‑1
                                CCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTA     <  1:14662960/35‑1
                                CCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTA     <  1:8623188/35‑1
                                CCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTA     <  1:1609803/35‑1
                                CCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTA     <  1:17622989/35‑1
                                 CCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAG    <  1:19334845/35‑1
                                  CCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGC   >  1:3547283/1‑35
                                  CCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGC   >  1:11645763/1‑35
                                   CGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG  >  1:12546879/1‑35
                                   CGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG  <  1:20087466/35‑1
                                   CGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG  <  1:799961/35‑1
                                   CGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG  <  1:12753859/35‑1
                                   CGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG  <  1:16392887/35‑1
                                                                      
GCAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/246007‑246042
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG  >  REL606/503801‑503834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.