New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2389861 = | 74 (0.720) | 12 (0.150) | 5/38 | NT | 19.1% | coding (116/825 nt) | mepA | penicillin‑insensitive murein endopeptidase |
? | REL606 | = 2877079 | 43 (0.530) | intergenic (‑276/+39) | araE/kduD | arabinose transporter/2‑deoxy‑D‑gluconate 3‑dehydrogenase |
Only 100 of 101 total aligned reads displayed.
TATGGATTATGATGATCTACAGATATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAA > REL606/2877046‑2877113 | tatGGATTATGATGATCTACAGATATAAAAAACCc < 1:11014321‑M2/35‑2 (MQ=255) atGGATTATGATGATCTACAGATATAAAAAACCct < 1:14612537‑M2/35‑3 (MQ=255) atGGATTATGATGATCTACAGATATAAAAAACCct < 1:13161518‑M2/35‑3 (MQ=255) atGGATTATGATGATCTACAGATATAAAAAACCct < 1:3532442‑M2/35‑3 (MQ=255) atGGATTATGATGATCTACAGATATAAAAAACCct > 1:8292859‑M2/1‑33 (MQ=255) ggATTATGATGATCTACAGATATAAAAAACCctgc > 1:16550907‑M2/1‑31 (MQ=255) ggATTATGATGATCTACAGATATAAAAAACCctgc < 1:12556240‑M2/35‑5 (MQ=255) ggATTATGATGATCTACAGATATAAAAAACCctgc < 1:9650920‑M2/35‑5 (MQ=255) gATTATGATGATCTACAGATATAAAAAACCctgcc < 1:15567116‑M2/35‑6 (MQ=255) gATTATGATGATCTACAGATATAAAAAACCctgcc < 1:11538025‑M2/35‑6 (MQ=255) aTTATGATGATCTACAGATATAAAAAACCCTGCCa > 1:3720023/1‑35 (MQ=255) aTTATGATGATCTACAGATATAAAAAACCCTGCCa < 1:8998249/35‑1 (MQ=255) ttATGATGATCTACAGATATAAAAAACCCTGCCAt > 1:5878994/1‑35 (MQ=255) tATGATGATCTACAGATATAAAAAACCCTGCCATg > 1:11995942/1‑35 (MQ=255) tATGATGATCTACAGATATAAAAAACCCTGCCATg > 1:8711319/1‑35 (MQ=255) tATGATGATCTACAGATATAAAAAACCCTGCCATg > 1:19941936/1‑35 (MQ=255) atgatgATCTACAGATATAAAAAACCCTGCCATGc < 1:8589877/35‑1 (MQ=255) atgatgATCTACAGATATAAAAAACCCTGCCATGc < 1:3479878/35‑1 (MQ=255) atgatgATCTACAGATATAAAAAACCCTGCCATGc > 1:15457030/1‑35 (MQ=255) tgatgaTCTACAGATATAAAAAACCCTGCCATGCg > 1:10014848/1‑35 (MQ=255) gatgatCTCCAGATATAAAAACCCCTGCCATGCgg < 1:7931403/35‑1 (MQ=37) atgatCTACAGATATAAAAAACCCTTCCATGCGGc > 1:12174897/1‑35 (MQ=255) atgatCTACAGATATAAAAAACCCTGCCATGCGGc > 1:4071292/1‑35 (MQ=255) atgatCTACAGATATAAAAAACCCTGCCATGCGGc < 1:20073907/35‑1 (MQ=255) atgatCTACAGATATAAAAAACCCTGCCATGCGGc > 1:15644445/1‑35 (MQ=255) atgatCTACAGATATAAAAAACCCTGCCATGCGGc > 1:3079940/1‑35 (MQ=255) agtatCTACAGATATAAAAAACCCTGCCATGCGGc < 1:19585038/32‑1 (MQ=255) tgatCTACAGATATAAAAAACCCTGCCATGCGGCa > 1:10247476/1‑35 (MQ=255) gatCTACATATATAAAAAACCCTGCCATGCGGCAg > 1:5062825/1‑35 (MQ=255) gatCTACAGATATAAAAAACCCTGCCATGCGGCAg > 1:15009838/1‑35 (MQ=255) gatCTACAGATATAAAAAACCCTGCCATGCGGCAg > 1:16931101/1‑35 (MQ=255) gatCTACAGATATAAAAAACCCTGCCATGCGGCAg > 1:12580465/1‑35 (MQ=255) atCTACAGATATAAAAAACCCTGCCATGCGGCAgg < 1:19034052/35‑1 (MQ=255) atCTACAGATATAAAAAACCCTGCCATGCGGCAgg > 1:17328178/1‑35 (MQ=255) tCTACAGATATAAAAAACCCTGCCATGCGGCAggg > 1:1391464/1‑35 (MQ=255) tCTACAGATATAAAAAACCCTGCCATGCGGCAggg > 1:16916780/1‑35 (MQ=255) tACAGATATAAAAAACCCTGCCATGCGGCAGGGTc < 1:1485056/35‑1 (MQ=255) aCAGATATAAAAAACCCTGCCATGCGGCAGGGTCa > 1:10614857/1‑35 (MQ=255) aCAGATATAAAAAACCCTGCCATGCGGCAGGGTCa > 1:910683/1‑35 (MQ=255) aCAGATATAAAAAACCCTGCCATGCGGCAGGGGCa > 1:10664473/1‑35 (MQ=255) cAGATATAAAAACCCCTGCCATGCGGCAGGGTCAt < 1:5436132/35‑1 (MQ=255) cAGATATAAAAAACCCTGCCATGCGGCAGGGTCAt > 1:3344221/1‑35 (MQ=255) cAGATATAAAAAACCCTGCCATGCGGCAGGGTCAt > 1:6946966/1‑35 (MQ=255) cAGATATAAAAAACCCTGCCATGCGGCAGGGTCAt > 1:4512509/1‑35 (MQ=255) aGATATAAAAAACCCTGCCATGCGGCAGGGTCATa < 1:63100/35‑1 (MQ=255) gATATAAAAACCCCTGCCATGCGGCAGGGTCATaa < 1:17962954/35‑1 (MQ=255) gATATAAAAAACCCTGCCATGCGGCAGGGTCATaa > 1:11007801/1‑35 (MQ=255) ccataaaAAACCctgcctatcgattgtgcgctacc > 1:16829145‑M2/3‑12 (MQ=255) atatAAAAAACCCTGCCATGCGGCAGGGTCATaaa > 1:18718631/1‑35 (MQ=255) atatAAAAAACCCTGCCATGCGGCAGGGTCATaaa > 1:7523421/1‑35 (MQ=255) atatAAAAAACCCTGCCATGCGGCAGGGTCATaaa > 1:16539720/1‑35 (MQ=255) atatAAAAAACCCTGCCATGCGGCAGGGTCATaaa > 1:8942013/1‑35 (MQ=255) atatAAAAAACCCTGCCATGCGGCAGGGGCATaaa > 1:2053815/1‑35 (MQ=255) cataaAAAAACctgcctatcgattgtgcgctaccc > 1:10160833‑M2/2‑11 (MQ=255) aaaaaaaaaccctgcctatcgattgtgcgctaccc > 1:6828270‑M2/4‑11 (MQ=255) ataAGAAACCctgcctatcgattgtgcgctacccg > 1:18057451‑M2/1‑10 (MQ=255) ataAAAAACCCTTCCATGCGGCAGGGGCATAAAAg > 1:15668798/1‑35 (MQ=38) taAAAACCCCTGCCATGCGGCAGGGTCATAAAAGt < 1:9674141/35‑1 (MQ=255) taAAAAACCctgcctatcgattgtgcgctacccgg > 1:4856770‑M2/1‑9 (MQ=255) taAAAAACCCTGCCATGCGGCAGGGTCATAAAAGt > 1:5313035/1‑35 (MQ=255) aaaaacCCCTGCCATGCGGCAGGGTCATAAAAGTa < 1:20352918/35‑1 (MQ=255) aaaaaaCCctgcctatcgattgtgcgctacccggc > 1:2873065‑M2/1‑8 (MQ=255) aaaaaaCCctgcctatcgattgtgcgctacccggc > 1:16799864‑M2/1‑8 (MQ=255) aaaaaaCCctgcctatcgattgtgcgctacccggc > 1:7478569‑M2/1‑8 (MQ=255) aaaaaaCCCTGCCATGCGGCAGGGTCATAAAAGTa > 1:1124885/1‑35 (MQ=255) aaaaaaCCCTGCCATGCGGCAGGGTCATAAAAGTa > 1:5643887/1‑35 (MQ=255) aaaaaaCCCTGCCATGCGGCAGGGTCATAAAAGTa < 1:12446408/35‑1 (MQ=255) aaaaaCCctgcctatcgattgtgcgctacccggca > 1:9423415‑M2/1‑7 (MQ=255) aaaaaCCCTGCCATGCGGCAGGGTCATAAAAGTaa > 1:8067708/1‑35 (MQ=255) aaaaaCCCTGCCATGCGGCAGGGTCATAAAAGTaa > 1:8262352/1‑35 (MQ=255) aaaaaACctgcctatcgattgtgcgctacccggca > 1:6613920‑M2/1‑7 (MQ=255) aacaCCCTGCCATGCGGCAGGGTCATAAAAGTaag < 1:19813990/32‑1 (MQ=255) aaaaCCctgcctatcgattgtgcgctacccggcac > 1:1201122‑M2/1‑6 (MQ=255) aaaaCCctgcctatcgattgtgcgctacccggcac > 1:15037798‑M2/1‑6 (MQ=255) aaaaCCCTGCCATGCGGCAGGGTCATAAAAGTaag > 1:758155/1‑35 (MQ=255) aaaCCctgcctatcgattgtgcgctacccggcaca > 1:713771‑M2/1‑5 (MQ=255) aaaCCctgcctatcgattgtgcgctacccggcaca > 1:3633388‑M2/1‑5 (MQ=255) aaaCCctgcctatcgattgtgcgctacccggcaca > 1:11098547‑M2/1‑5 (MQ=255) aaaCCCTGCCATGCGGCAGGGTCATAAAAGTaaga > 1:14369743/1‑35 (MQ=255) aaCCctgcctatcgattgtgcgctacccggcacag > 1:1181966‑M2/1‑4 (MQ=255) aaCCctgcctatcgattgtgcgctacccggcacag > 1:288221‑M2/1‑4 (MQ=255) aaCCctgcctatcgattgtgcgctacccggcacag > 1:4869064‑M2/1‑4 (MQ=255) aaCCctgcctatcgattgtgcgctacccggcacag > 1:18615384‑M2/1‑4 (MQ=255) aaCCCTGCCATGCGGCAGGGTCATAAAAGTaagaa > 1:5316808/1‑35 (MQ=255) aaCCCTGCCATGCGGCAGGGTCATAAAAGTaagaa > 1:13619286/1‑35 (MQ=255) aaCCCTGCCATGCGGCAGGGTCATAAAAGTaagaa > 1:12944449/1‑35 (MQ=255) aaACctgcctatcgattgtgcgctacccggcacag > 1:8843388‑M2/1‑4 (MQ=255) aCCctgcctatcgattgtgcgctacccggcacagg > 1:18780219‑M2/1‑3 (MQ=255) aCCCTGCCATGCGGCAGGGTCATAAAAGTaagaag < 1:9109542/35‑1 (MQ=255) aCCCTGCCATGCGGCAGGGTCATAAAAGTaagaag > 1:4890434/1‑35 (MQ=255) aCCCTGCCATGCGGCAGGGTCATAAAAGTaagaag > 1:11553332/1‑35 (MQ=255) ccctgcctatcgattgtgcgctacccggcacaggt > 1:16658529‑M2/1‑2 (MQ=255) ccctgcctatcgattgtgagctacccggcacaggt > 1:4394880‑M2/1‑2 (MQ=255) cccTGCCATGCGGCAGGGTCATAAAAGTAagaaga > 1:11449833/1‑35 (MQ=255) acctgcctatcgattgtgcgctacccggcacaggt > 1:2508952‑M2/2‑2 (MQ=255) cctgcctatcgattgtgcgctacccggcacaggtt > 1:16951609‑M2/1‑1 (MQ=255) ccTGCCNTGCGGCAGGGGCATAAAAGTAAgaagaa > 1:10081363/1‑35 (MQ=255) ccTGCCATGCGGCAGGGTCATAAAAGTAAgaagaa > 1:6669431/1‑35 (MQ=255) ccTGCCATGCGGCAGGGTCATAAAAGTAAgaagaa > 1:15249530/1‑35 (MQ=255) ccTGCCATGCGGCAGGGGCATAAAAGTAAgaagaa > 1:20437631/1‑35 (MQ=255) | TATGGATTATGATGATCTACAGATATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAA > REL606/2877046‑2877113 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |