New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 76423 =43 (0.420)4 (0.050) 3/36 NT 7.3% coding (903/1611 nt) thiP thiamin ABC transporter membrane protein
?REL606 = 3891004 69 (0.900)coding (451/1497 nt) yieN fused predicted transcriptional regulator: sigma54 activator protein/conserved protein

Only 100 of 106 total aligned reads displayed.

CATCGACGATCACCGCCAGCAACGGTGGCAGCAACAGCAGCAGCGCCAGCACAATTAACACCGTGTCGC  >  REL606/76389‑76457
                                  |                                  
tgtctgcttccggcagctcgttggaggccgccacc                                    >  1:13734953‑M1/35‑35 (MQ=255)
tgtctgcttccggcagctcgttggaggccgccacc                                    <  1:16165298‑M1/1‑1 (MQ=255)
 gtctgcttccggcagctcgttggaggccgccacca                                   >  1:8736859‑M1/34‑35 (MQ=255)
 aTCGACGATCACCGCCAGCAACGGTGGCAGGAAca                                   >  1:8623833/1‑35 (MQ=255)
 aTCGACGATCACCGCCAGCAACGGTGGCAGGAAca                                   >  1:13965529/1‑35 (MQ=255)
  tctgcttccggcagctcgttggaggccgccaccag                                  >  1:15556762‑M1/33‑35 (MQ=255)
  tctgcttccggcagctcgttggaggccgccaccag                                  >  1:16650960‑M1/33‑35 (MQ=255)
  tCGACGATCACCGCCAGCAACGGTGGCAGCAAcag                                  >  1:4602643/1‑35 (MQ=255)
   ctgcttccggcatctcgttggaggccgccaccagc                                 <  1:274902‑M1/4‑1 (MQ=255)
   ctgcttccggcagctcgttggaggccgccaccagc                                 <  1:15326957‑M1/4‑1 (MQ=255)
   ctgcttccggcagctcgttggaggccgccaccagc                                 <  1:14503025‑M1/4‑1 (MQ=255)
   ctgcttccggcagctcgttggaggccgccaccagc                                 <  1:8258067‑M1/4‑1 (MQ=255)
   ctgcttccggcagctcgttggaggccgccaccagc                                 <  1:14474871‑M1/4‑1 (MQ=255)
   ctgcttccggcagctcgttggaggccgccaccagc                                 >  1:9009567‑M1/32‑35 (MQ=255)
   cggcttccggcagctcgttggaggccgccaccagc                                 >  1:7673318‑M1/32‑35 (MQ=255)
   cgacgaTCACCGCCAGCAACTGTGGCAGGGAcagc                                 >  1:9503475/1‑35 (MQ=21)
   cgacgaTCACCGCCAGCAACTGTGGCAGGAAcagc                                 >  1:8706417/1‑35 (MQ=25)
   cgacgaTCACCGCCAGCAACGGTGGCAGGCAcagc                                 >  1:17838947/1‑35 (MQ=37)
    tgcttccggcagctcgttggaggccgccaccagca                                >  1:17392045‑M1/31‑35 (MQ=255)
    tgcttccggcagctcgttggaggccgccaccagca                                <  1:13071199‑M1/5‑1 (MQ=255)
    gacgaTCACCGCCAGCAACGGTGGCAGCCAcagca                                >  1:4345477/1‑35 (MQ=255)
    gacgaTCACCGCCAGCAACGGTGGCAGCAAcagca                                >  1:3400655/1‑35 (MQ=255)
    gacgaTCACCGCCAGCAACGGTGGCAGCAAaagca                                >  1:8513967/1‑35 (MQ=255)
     tcttcgggcagctcgttggaggccgccaccagcag                               >  1:950249‑M1/30‑35 (MQ=255)
     gcttccggcagctcgttggaggccgcccccagcag                               <  1:19045485‑M1/6‑1 (MQ=255)
     acgaTCACCGCCAGCAACGGTGGCAGCAAcagcag                               >  1:10163754/1‑35 (MQ=255)
     acgaTCACCGCCAGCAACGGTGGCAGCAAcagcag                               >  1:13065980/1‑35 (MQ=255)
     acgaTCACCGCCAGCAACGGTGGCAGCAAaagcag                               >  1:8909840/1‑35 (MQ=255)
      cgaTCACCGCCAGCAACGGTGTCAGCAAcagcagc                              >  1:12779622/1‑35 (MQ=255)
      cgaTCACCGCCAGCAACGGTGGCAGCAAaagcagc                              >  1:11560962/1‑35 (MQ=255)
       gaTCACCGCCAGCAACGGTGGCAGGCAcaggagca                             >  1:15792148/1‑35 (MQ=25)
       gaTCACCGCCAGCAACGGTGGCAGGAAaagcagca                             >  1:14759745/1‑35 (MQ=37)
       gaTCACCGCCAGCAACGGTGGCAGCAAcagcagca                             >  1:8023379/1‑35 (MQ=255)
       gaTCACCGCCAGCAACGGTGGCAGCAAaaggaggc                             >  1:17460031/1‑33 (MQ=25)
         tCACCGCCAGCAACGGTGGCAGCAAcagcagcagg                           >  1:10625773/1‑34 (MQ=255)
           aCCGCCAGCAACGGTGGCAGCAACAGCAGCAgggc                         >  1:3326007/1‑35 (MQ=255)
           aCCGCCAGCAACGGTGGCAGCAACAGCAGCAgcgc                         >  1:10309811/1‑35 (MQ=255)
           aCCGCCAGCAACGGTGGCAGCAAAAACAGCAgcgg                         >  1:6564200/1‑34 (MQ=25)
              gCCAGCAACGGTGGCAGCAACAGCAGCAGGGcccg                      >  1:3042295/1‑33 (MQ=37)
              gCCAGCAACGGTGGCAGCAACAGCAGCAGCGcccg                      >  1:17430447/1‑33 (MQ=255)
                  gCAACGGTGGCAGCAACAGCAGCAGCGCCCGcacc                  >  1:4159973/1‑34 (MQ=255)
                  gCAACGGTGGCAGCAAAAGCAGCAGCGCCCCcaca                  >  1:18550845/1‑35 (MQ=21)
                      gggTGGCAGCACCAGCAGCAGCGCCAGCACAATTa              <  1:5998564/34‑1 (MQ=255)
                      cGGTGTCAGCAACAGCAGCAGCGCCAGCACAATTa              >  1:7059502/1‑35 (MQ=255)
                      cGGTGGCAGCAACAGCAGCAGCGCCAGCACAAATa              >  1:18928223/1‑35 (MQ=255)
                       ggTGTCAGCAACAGCAGCAGCGCCAGCACAATTaa             >  1:18974937/1‑35 (MQ=255)
                       ggTGGCAGCAACAGCAGCAGCGCCAGCACAATTaa             >  1:5330209/1‑35 (MQ=255)
                       ggTGGCAGCAACAGCAGCAGCGCCAGCACAATTaa             >  1:11991713/1‑35 (MQ=255)
                        gTGCCACCACCAGCAGCAGCGCCAGCACAATTAac            <  1:8485454/35‑1 (MQ=18)
                         tGGCAGCAACAGCAGCAGCGCCAGCACAATTAaca           >  1:14597181/1‑35 (MQ=255)
                         tGGCAGCAACAGCAGCAGCGCCAGCACAATTAaca           >  1:11177612/1‑35 (MQ=255)
                         tGGCAGCAACAGCAGCAGCGCCAGCACAATTAaca           >  1:9524708/1‑35 (MQ=255)
                         tGGCAGCAACAGCAGCAGCGCCAGCACAATTAaca           <  1:12352736/35‑1 (MQ=255)
                         tGGCAGCAACAGCAGCAGCGCCAGCACAATTAaca           >  1:2468341/1‑35 (MQ=255)
                         gggCAGCAACAGCAGCAGCGCCAGCACAATTAaca           <  1:8733093/34‑1 (MQ=255)
                         gggCAGCAACAGCAGCAGCGCCAGCACAATTAaca           <  1:18748223/34‑1 (MQ=255)
                         ggccgccacCAGCAGCAGCGCCAGCACAATTAaca           >  1:5013909‑M1/10‑35 (MQ=255)
                          ggCAGCACCAGCAGCAGCGCCAGCACAATTAacac          <  1:12597014/35‑1 (MQ=255)
                          ggCAGCAACAGCAGCAGCGCCAGCCCAATTAaaac          >  1:16065654/1‑35 (MQ=18)
                          gccgccacCAGCAGCAGCGCCAGCACAATTAacac          >  1:17507027‑M1/9‑35 (MQ=255)
                          gccgccacCAGCAGCAGCGCCAGCACAATTAacac          >  1:8725569‑M1/9‑35 (MQ=255)
                           gcagcaCCAGCAGCAGCGCCAGCACAATTAACAcc         <  1:15237930/35‑1 (MQ=255)
                           gcagcaACAGCAGCAGCGCCAGCACAATTAACAcc         >  1:1435050/1‑35 (MQ=255)
                           gcagcaACAGCAGCAGCGCCAGCACAATTAACAcc         >  1:10924112/1‑35 (MQ=255)
                           gcagcaACAGCAGCAGCGCCAGCACAATTAACAcc         >  1:12608881/1‑35 (MQ=255)
                           gcagcaACAGCAGCAGCGCCAGCACAATTAACAcc         >  1:11241903/1‑35 (MQ=255)
                            cgacacCAGCAGCAGCGCCAGCACAATTAACACCg        >  1:15622777‑M1/7‑35 (MQ=255)
                            cagcaACAGCAGCAGCGCCAGCACAATTAACACCg        >  1:4574808/1‑35 (MQ=255)
                            cagcaACAGCAGCAGCGCCAGCACAATTAACACCg        >  1:2923122/1‑35 (MQ=255)
                            cagcaACAGCAGCAGCGCCAGCACAATTAACACCg        >  1:1522525/1‑35 (MQ=255)
                            cagcaACAGCAGCAGCCCCAGCACAATTAACACCg        >  1:6023142/1‑35 (MQ=255)
                             ggcaACAGCAGCAGCGCCAGCACAATTAACACCgt       <  1:5954163/34‑1 (MQ=255)
                             agcacCAGCAGCAGCGCCAGCACAATTAACACCgt       >  1:9234295‑M1/6‑35 (MQ=255)
                             agcaACAGCAGCAGCGCCAGCACAATTAACAccag       >  1:2578083/1‑33 (MQ=255)
                             agcaACAGCAGCAGCGCCAGCACAATTAACACCgt       >  1:9793043/1‑35 (MQ=255)
                             agaacCAGCAGCAGCGCCAGCACAATTAACACCgt       >  1:5382211‑M1/6‑35 (MQ=255)
                             acaacCAGCAGCAGCGCCAGCACAATTAACACCgt       >  1:5493073‑M1/6‑35 (MQ=255)
                             acaacCAGCAGCAGCGCCAGCACAATTAACACCgt       >  1:17756461‑M1/6‑35 (MQ=255)
                              gcacCAGCAGCAGCGCCAGCACAATTAACACCgtg      >  1:16563706‑M1/5‑35 (MQ=255)
                              gcaACAGCAGCAGCGCCAGCACAATTAACACCgtg      <  1:4249484/35‑1 (MQ=255)
                              gcaACAGCAGCAGCGCCAGCACAATTAACACCgtg      >  1:8610887/1‑35 (MQ=255)
                              ccaACAGCAGCAGCGCCAGCACAATTAACACCgtg      <  1:18871352/34‑1 (MQ=255)
                               cacCAGCAGCAGCGCCAGCACAATTAACACCgtgt     >  1:5268836‑M1/4‑35 (MQ=255)
                               caACAGCAGCAGCGCCAGCCCAATTAACACCgtgt     >  1:13243855/1‑35 (MQ=255)
                               caACAGCAGCAGCGCCAGCACAATTAACACCgtgt     >  1:12215279/1‑35 (MQ=255)
                               caACAGCAGCAGCGCCAGCACAATTAACACCgtgt     >  1:12844638/1‑35 (MQ=255)
                               caACAGCAGCAGCGCCAGCACAATTAACACCgtgt     >  1:7471330/1‑35 (MQ=255)
                                caCAGCAGCAGCGCCAGCACAATTAACACCGTGTc    <  1:1335408/34‑1 (MQ=255)
                                aaCAGCAGCAGCGCCAGCACAATTAACACCGTGTc    <  1:2395070/35‑1 (MQ=255)
                                aaCAGCAGCAGCGCCAGCACAATTAACACCGTGTc    >  1:3036798/1‑35 (MQ=255)
                                aaCAGCAGCAGCGCCAGCACAATTAACACCGTGTc    >  1:7939033/1‑35 (MQ=255)
                                 cCGGCAGCAGCGCCAGCACAATTAACACCGTGTCg   >  1:733036‑M1/2‑35 (MQ=255)
                                 cCAGCAGCAGCGCCAGCACAATTAACACCGTGTCg   >  1:18123404‑M1/2‑35 (MQ=255)
                                 aCAGCAGCAGCGCCAGCACAATTAACACCGTGTCg   >  1:2628281/1‑35 (MQ=255)
                                 aCAGCAGCAGCGCCAGCACAATTAACACCGTGTCg   >  1:16432675/1‑35 (MQ=255)
                                 aCAGCAGCAGCGCCAGCACAATTAACACCGTGTCg   >  1:8162257/1‑35 (MQ=255)
                                 aCAGCAGCAGCGCCAGCACAATTAACACCGTGTCg   >  1:5417677/1‑35 (MQ=255)
                                 aCAGCAGCAGCGCCAGCACAATTAACACCGTGTCg   <  1:9725157/35‑1 (MQ=255)
                                 aCAGCAGCAGCGCCAGCACAATTAACACCGTGTCg   >  1:12024412/1‑35 (MQ=255)
                                  CAGCAGCAGCGCCAGCACAATTAACACCGTGTCGc  <  1:19825378‑M1/35‑1 (MQ=255)
                                  |                                  
CATCGACGATCACCGCCAGCAACGGTGGCAGCAACAGCAGCAGCGCCAGCACAATTAACACCGTGTCGC  >  REL606/76389‑76457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.