Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,420,709 | +GA :: IS3 (+) +4 bp | 14.6% | intergenic (+21/‑9) | ynaK → / → ECB_01341 | conserved protein/hypothetical protein |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1420709 = | 60 (0.780) | 11 (0.120) | 10/44 | NT | 13.0% | intergenic (+21/‑12) | ynaK/ECB_01341 | conserved protein/hypothetical protein |
? | REL606 | = 1443893 | NA (NA) | noncoding (1255/1255 nt) | IS3 | repeat region | |||||
* | ? | REL606 | = 1420712 | 69 (0.810) | 11 (0.110) | 11/46 | NT | 12.2% | intergenic (+24/‑9) | ynaK/ECB_01341 | conserved protein/hypothetical protein |
? | REL606 | 1607918 = | NA (NA) | coding (15/1320 nt) | ECB_01510 | putative tail component of prophage |
Only 100 of 183 total aligned reads displayed.
CAGGGATTTAAATAAATCATTTATTACAACAGGCTACCTTCGGGTGGCCTTTTTTATTGCTGCGATCCG > REL606/1420678‑1420746 | cAGGGATTTAAATAAATCATTTATTACAACAGGCT < 1:13249009‑M1/35‑1 (MQ=255) cAGGGATTTAAATAAATCATTTATTACAACAGGCT > 1:15606382‑M1/1‑35 (MQ=255) aGGGATTTAAATAAATCATTTATTACAACAGGCTa > 1:10071638/1‑35 (MQ=255) aGGGATTTAAATAAATCATTTATTACAACAGGCTa > 1:11023111/1‑35 (MQ=255) gggATTTAAATAAATCATTTATTACAACAGGCTAc < 1:14419043/35‑1 (MQ=255) gggATTTAAATAAATCATTTATTACAACAGGCTAc > 1:7364088/1‑35 (MQ=255) gggATTTAAATAAATCATTTATTACAACAGGCTAc < 1:18530205/35‑1 (MQ=255) ggATTTAAATAAATCATTTATTGCAACAGGCTAcc < 1:8388073/35‑1 (MQ=255) ggATTTAAATAAATCATTTATTACAACAGGCTAcc > 1:1370189/1‑35 (MQ=255) gATTTAAATAAATCATTTATTACAACAGGCTAcat < 1:12261458/35‑3 (MQ=255) gATTTAAATAAATCATTTATTACAACAGGCTAcat < 1:1257396/35‑3 (MQ=255) gATTTAAATAAATCATTTATTACAACAGGCTACCt > 1:6956318/1‑35 (MQ=255) gATTTAAATAAATCATTTATTACAACAGGCTACCt < 1:5961773/35‑1 (MQ=255) gATTTAAATAAATCATTTATTACAACAGGCTACCt < 1:8616683/35‑1 (MQ=255) gtgtccatattacgtgggtaggatcaGGCTACCtt > 1:16358749‑M1/27‑35 (MQ=255) aTTTAAATAAATCATTTATTACAACAGGCTACCtt < 1:1625811/35‑1 (MQ=255) aTTTAAATAAATCATTTATTACAACAGGCTACCtt < 1:18934868/35‑1 (MQ=255) tttAAATAAATCATTTATTACAACATGCTACCTTc > 1:15862088/1‑35 (MQ=255) tttAAATAAATCATTTATTACAACAGGCTACCTTc < 1:14060952/35‑1 (MQ=255) ttAAATAAATCATTTATTACAACAGGCTACCTTCg > 1:4566623/1‑35 (MQ=255) ttAAATAAATCATTTATTACAACAGGCTACCTTCg > 1:7195448/1‑35 (MQ=255) tccatattacgtgggtaggatcaGGCTACCTTCgg > 1:8243402‑M1/24‑35 (MQ=255) taaataaaTCATTTATTACAACAGGCTgatcttac < 1:20108480‑M1/35‑9 (MQ=255) taaataaaTCATTTATTACAACAGGCTACCTTCgg > 1:16050821/1‑35 (MQ=255) taaataaaTCATTTATTACAACAGGCTACCTTCgg < 1:16355890/35‑1 (MQ=255) taaataaaTCATTTATTACAACAGGCTACCTTCgg < 1:17070938/35‑1 (MQ=255) aaataaatCATTTATTACAACAGGCTgatcttacc > 1:12954301‑M1/1‑26 (MQ=255) aataaatCATTTATTACAACAGGCTACCTTCGGGt > 1:13123100/1‑35 (MQ=255) ataaatCATTTATTACAACAGGCTACCTTCGGGTg > 1:10486392/1‑35 (MQ=255) ataaatCATTTATTACAACAGGCTACCTTCGGGTg < 1:9152614/35‑1 (MQ=255) taaatCATTTATTACAACAGGCTACCTTCGGGTgg > 1:6973893/1‑35 (MQ=255) attacgtgggtaggatcaGGCTACCTTCGGGTGGc > 1:3548724‑M1/19‑35 (MQ=255) aaatCATTTATTACAACAGGCTACCTTCGGGTGGc < 1:4328128/35‑1 (MQ=255) aaatCATTTATTACAACAGGCTACCTTCGGGTGGc < 1:7424869/35‑1 (MQ=255) aatCATTTATTACAACAGGCTgatcttacccagca > 1:11546969‑M1/1‑21 (MQ=255) aatCATTTATTACAACAGGCTACCTTCGGGTGGcc < 1:13659660/35‑1 (MQ=255) atCATTTATTACAACAGGCTACCTTCGGGGGGCCt > 1:14422836/1‑35 (MQ=255) tCATTTATTACAACAGGCTACCTTCGGGTGGCCtt < 1:20533476/35‑1 (MQ=255) tCATTTATTACAACAGGCTACCTTCGGGTGGCCtt > 1:6755049/1‑35 (MQ=255) cATTTATTACAACAGGCTgatcttacccagcaata < 1:6636569‑M1/35‑18 (MQ=255) cATTTATTACAACAGGCTgatcttacccagcaata > 1:1871483‑M1/1‑18 (MQ=255) gtgggtaggatcaGGCTACCTTCGGGTGGCCtttt > 1:4195193‑M1/14‑35 (MQ=255) gtgggtaggatcaGGCTACCTTCGGGGGGCCtttt < 1:6506581‑M1/22‑1 (MQ=255) aTTTATTACAACAGGCTACCTTCGGGTGGCCtttt < 1:13980635/35‑1 (MQ=255) aTTTATTACAACAGGCTACCTTCGGGTGGCCtttt < 1:12898822/35‑1 (MQ=255) aTTTATTACAACAGGCTACCTTCGGGTGGCCtttt > 1:4614020/1‑35 (MQ=255) aTTTATTACAACAGGCTACCTTCGGGTGGCCtttt > 1:20519891/1‑35 (MQ=255) tttATTACAACAGGCTgatcttacccagcaatagt < 1:6059269‑M1/35‑20 (MQ=255) tttATTACAACAGGCTACCTTAGGGTGGCCttttt < 1:3359008/35‑1 (MQ=255) tgggtaggatcaGGCTACCTTCGGGTGGCCttttt < 1:13378089‑M1/23‑1 (MQ=255) ttattaCAACAGGCTgatcttacccagcaatagtg < 1:4018553‑M1/35‑21 (MQ=255) ttattaCAACAGGCTACCTTCGGGTGGCCtttttt > 1:16642782/1‑35 (MQ=255) ttattaCAACAGGCTACCTTCGGGTGGCCtttttt > 1:5077988/1‑35 (MQ=255) ttattaCAACAGGCTACCTTCGGGTGGCCtttttt > 1:14131479/1‑35 (MQ=255) ttattaCAACAGGCTACCTTCGGGTGGCCtttttt > 1:19833314/1‑35 (MQ=255) tattaCAACAGGCTACCTTCGGGTGGCCTTTTTTa < 1:10344306/35‑1 (MQ=255) tattaCAACAGGCTACCTTCGGGTGGCCTTTTTTa < 1:1726656/35‑1 (MQ=255) tattaCAACAGGCTACCTTCGGGTGGCCTTTTTTa < 1:5998228/35‑1 (MQ=255) gtaggatcaGGCTACCTTCGGGTGGCCTTTTTTAt < 1:10082081‑M1/26‑1 (MQ=255) attaCAACAGGCTACCTTCGGGTGGCCTTTTTTAt < 1:15420536/35‑1 (MQ=255) ttaCAACAGGCTACCTTCGGGTGGCCTTTTTTAtt < 1:19300463/35‑1 (MQ=255) taCAACAGGCTACCTTCGGGTGGCCTTTTTTATtg > 1:1485437/1‑35 (MQ=255) taCAACAGGCTACCTTCGGGTGGCCTTTTTTATtg < 1:15935798/35‑1 (MQ=255) ggatcaGGCTACCTTCGGGTGGCCTTTTTTATtgc < 1:14869056‑M1/29‑1 (MQ=255) acaacaGGCTgatcttacccagcaatagtggacac > 1:18241532‑M1/1‑10 (MQ=255) acaacaGGCTACCTTCGGGTGGCCTTTTTTATtgc < 1:15485120/35‑1 (MQ=255) acaacaGGCTACCTTCGGGTGGCCTTTTTTATtgc > 1:11792965/1‑35 (MQ=255) caacaGGCTACCTTCTGGTGGCCTTTTTTATtgct > 1:18889876/1‑35 (MQ=255) caacaGGCTACCTTCGGGTGGCCTTTTTTATtgct < 1:15369131/35‑1 (MQ=255) caacaGGCTACCTTCGGGTGGCCTTTTTTATtgct > 1:17411519/1‑35 (MQ=255) aacaGGCTACCTTCGGGTGGCCTTTTTTATtgctg < 1:3719674/35‑1 (MQ=255) aacaGGCTACCTTCGGGTGGCCTTTTTTATtgctg < 1:185686/35‑1 (MQ=255) aacaGGCTACCTTCGGGTGGCCTTTTTTATtgctg > 1:17667603/1‑35 (MQ=255) tcaGGCTACCTTCGGGTGGCCTTTTTTATtgctgc > 1:7127080‑M1/4‑35 (MQ=255) naGGCTACCTTCGGGTGGCCTTTTTTATTTCTGCg < 1:7947799‑M1/33‑1 (MQ=255) aGGCTACCTTCGGGTGGCCTTTTTTATTGCTGCGa < 1:2303163‑M1/34‑1 (MQ=255) aGGCTACCTTCGGGTGGCCTTTTTTATTGCTGCGa < 1:777406‑M1/34‑1 (MQ=255) ggCTACCTTCGGGTGGCCTTTTTTATTGCTGCGAt < 1:10683959/35‑1 (MQ=255) ggCTACCTTCGGGTGGCCTTTTTTATTGCTGCGAt > 1:5188534/1‑35 (MQ=255) ggCTACCTTCGGGTGGCCTTTTTTATTGCTGCGAt < 1:1934999/35‑1 (MQ=255) ggCTACCTTCGGGTGGCCTTTTTTATTGCTGCGAt < 1:9739928/35‑1 (MQ=255) gCTACCTTCGGGTGGCCTTTTTTATTGCTGCGATc > 1:12206909/1‑35 (MQ=255) gCTACCTTCGGGTGGCCTTTTTTATTGCTGCGATc > 1:7424315/1‑35 (MQ=255) cTgatcttacccagcaatagtggacacgcggctaa < 1:5480941‑M1/35‑34 (MQ=255) cTgatcttacccagcaatagtggacacgcggctaa > 1:8677302‑M1/1‑2 (MQ=255) cTgatcttacccagcaatagtggacacgcggctaa > 1:2872768‑M1/1‑2 (MQ=255) cTgatcttacccagcaatagtggacacgcggctaa < 1:18167789‑M1/35‑34 (MQ=255) cTACCTTCGGGTGGCCTTTTTTATTGCTGCGATcc < 1:7252606/35‑1 (MQ=255) cTACCTTCGGGTGGCCTTTTTTATTGCTGCGATcc < 1:11125791/35‑1 (MQ=255) tgatcttacccagcaatagtggacacgctgctaag > 1:5702385‑M1/1‑1 (MQ=255) tgatcttacccagcaatagtggacacgcggctaag < 1:10307756‑M1/35‑35 (MQ=255) tgatcttacccagcaatagtggacacgcggctaag < 1:8821101‑M1/35‑35 (MQ=255) tgatcttacccagcaatagtggacacgcggctaag < 1:9902548‑M1/35‑35 (MQ=255) tgatcttacccagcaatagtggacacgcggctaag > 1:11286236‑M1/1‑1 (MQ=255) tgatcttacccagcaatagtggacacgcggctaag < 1:13225826‑M1/35‑35 (MQ=255) tgatcttacccagcaatagtggacacgcggctaag > 1:2915025‑M1/1‑1 (MQ=255) tgatcttacccagcaatagtggacacgcggctaag < 1:18905772‑M1/35‑35 (MQ=255) tgatcttacccagcaatagtggacacgcggctaag > 1:18444677‑M1/1‑1 (MQ=255) tgatcttacccagcaatagtggacacgcggctaag > 1:16883588‑M1/1‑1 (MQ=255) tACCTTCGGGTGGCCTTTTTTATTGCTGCGATCCg < 1:2390822/35‑1 (MQ=255) | CAGGGATTTAAATAAATCATTTATTACAACAGGCTACCTTCGGGTGGCCTTTTTTATTGCTGCGATCCG > REL606/1420678‑1420746 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |