New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1689078 = | 46 (0.450) | 9 (0.120) | 4/34 | NT | 15.7% | coding (362/636 nt) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
? | REL606 | = 1996353 | 64 (0.880) | coding (1494/1644 nt) | yeeO | predicted multidrug efflux system |
Only 100 of 123 total aligned reads displayed.
GCGCTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGCCAACGTCGTATTAAACACTGCATTCGGCTGG > REL606/1689044‑1689112 | ggcaaacattcccatccagacaccaaccacacccc < 1:13477524‑M1/1‑1 (MQ=255) ggcaaacattcccatccagacaccaaccacacccc < 1:17682290‑M1/1‑1 (MQ=255) ggcaaacattcccatccagacaccaaccacacccc > 1:7131349‑M1/35‑35 (MQ=255) ggcaaacattcccatccagacaccaacaacacccc > 1:14999758‑M1/35‑35 (MQ=255) gcgcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAAc > 1:1923918/1‑35 (MQ=255) gcgcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAAc < 1:94742/35‑1 (MQ=255) gcgcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAAc < 1:17825712/35‑1 (MQ=255) gcaaacattcccatccagacaccaaccacacccCa < 1:8007759‑M1/2‑1 (MQ=255) gcaaacattcccatccagacaccaaccacacccCa > 1:3255841‑M1/34‑35 (MQ=255) cgcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACa < 1:16211635/35‑1 (MQ=255) cgcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACa > 1:5064061/1‑35 (MQ=255) cgcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACa < 1:19264681/35‑1 (MQ=255) gcTTGAAGCCCTGCCCTGCGTAGGTCGTAAAACAg > 1:2796325/1‑35 (MQ=255) gcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAg < 1:15687268/35‑1 (MQ=255) gcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAg > 1:11309426/1‑35 (MQ=255) gcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAg > 1:16619536/1‑35 (MQ=255) gcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAg < 1:7094769/35‑1 (MQ=255) cgaacattcccatccagacaccaaccacacccCAg > 1:7788969‑M1/33‑35 (MQ=255) caaacattcccatccagacaccaaccacacccCAg < 1:869049‑M1/3‑1 (MQ=255) caaacattcccatccagacaccaaccacacccCAg < 1:4352364‑M1/3‑1 (MQ=255) caaacattcccatccagacaccaaccacacccCAg < 1:10893077‑M1/3‑1 (MQ=255) caaacattcccatccagacaccaaccacacccCAg < 1:14052991‑M1/3‑1 (MQ=255) caaacattcccatccagacaccaaccacacccCAg < 1:4542821‑M1/3‑1 (MQ=255) caaacattcccatccagacaccaaccacacccCAg < 1:6321948‑M1/3‑1 (MQ=255) cTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGc > 1:9964018/1‑35 (MQ=255) cTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGc > 1:16434569/1‑35 (MQ=255) cTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGc > 1:12820279/1‑35 (MQ=255) aaacattcccatccagacaccaaccacacccCAGc < 1:8722101‑M1/4‑1 (MQ=255) aaacattcccatccagacaccaaccacacccCAGc < 1:13219822‑M1/4‑1 (MQ=255) aaacattcccatccagacaccaaccacacacCAGc > 1:6583087‑M1/32‑35 (MQ=255) aaacattaccatccagacaccaaccacacccCAGc > 1:4085891‑M1/32‑35 (MQ=255) tGAAGCCCTGCCCTGCGTAGGTCGTAAAACAGCCa > 1:9584576/1‑35 (MQ=255) tGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGCCa > 1:8265258/1‑35 (MQ=255) tGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGCCa > 1:9208729/1‑35 (MQ=255) acattcccatccagacaccaaccacacccCAGCCa < 1:11768‑M1/6‑1 (MQ=255) acattcccatccagacaccaaccacacccCAGCCa < 1:11845146‑M1/6‑1 (MQ=255) acattcccatccagacaccaaccacacccCAGCCa < 1:829864‑M1/6‑1 (MQ=255) gAAGCCCTGCCCGGCGTAGGTCGTAAAACAGCCaa > 1:10354164/1‑35 (MQ=255) gAAGCCCTGCCCGGCGTAGGTCGTAAAACAGCCaa > 1:2655853/1‑35 (MQ=255) cattcccatccagacaccaaccacacccCAGCCaa < 1:8383997‑M1/7‑1 (MQ=255) aaGCCCTGCCCGGCGTAGGTCGTAAAACAGCCAAc > 1:11510622/1‑35 (MQ=255) aaGCCCTGCCCGGCGTAGGTCGTAAAACAGCCAAc > 1:11482314/1‑35 (MQ=255) aaGCCCTGCCCGGCGTAGGTCGTAAAACAGCCAAc > 1:10205103/1‑35 (MQ=255) aGCCCTGCCCGGCGTAGGTCGTACAACAGCCaaag > 1:10114419/1‑33 (MQ=38) aGCCCTGCCCGGCGTAGGTCGTAAAACAGCCAAcg > 1:10174366/1‑35 (MQ=255) ccTGCCCGGCGTAGGTCGTAAAACAGCCAAcgtcg > 1:18624672/1‑35 (MQ=255) ccTGCCCGGCGTAGGTCGTAAAACAGCCAAcgtcg > 1:20544511/1‑35 (MQ=255) ccTGCCCGGCGTAGGTCGTAAAACAGCCAAcgtcg > 1:17065248/1‑35 (MQ=255) cTGCCCGGCGTAGGTCGTAAAACAGCCAAcgtcgt > 1:16307132/1‑35 (MQ=255) cTGCCCGGCGTAGGTCGTAAAACAGCCAAcgtcgt > 1:1296880/1‑35 (MQ=255) cTGCCCGGCGTAGGTCGTAAAACAGCCAAcgtcgt > 1:8773753/1‑35 (MQ=255) tGCCCGGCGTAGGTCGTAAAACAGCCAACGTCGTa > 1:3658610/1‑35 (MQ=255) tGCCCGGCGTAGGTCGTAAAACAGCCAACGGCGTa > 1:440877/1‑35 (MQ=255) gCCCGGCGTAGGTCGTAAAACAGCCAACGCCGTAt > 1:15047849/1‑35 (MQ=255) cccGGCGTAGGTCGTAAAACAGCCAACGTCGTAtt > 1:18569368/1‑35 (MQ=255) cccGGCGTAGGTCGTAAAACAGCCAACGTCGTAtt > 1:10185928/1‑35 (MQ=255) ccGGCGTAGGTCGTAAAACAGCCAACGTCGTATTa > 1:11867738/1‑35 (MQ=255) ccGGCGTAGGTCGTAAAACAGCCAACGTCGTATTa > 1:4721818/1‑35 (MQ=255) ccGGCGTAGGTCGTAAAACAGCCAACGTCGCATTa > 1:7688527/1‑35 (MQ=255) ccGGCGTAGGTCGTAAAACAGCCAACGGCGTATTa > 1:13578585/1‑35 (MQ=255) cGGCGTAGGTCGTAAAACAGCCAACGTCGTATTaa > 1:14590759/1‑35 (MQ=255) cGGCGTAGGTCGTAAAACAGCCAACGTCGTATTaa > 1:11236132/1‑35 (MQ=255) cGGCGTAGGTCGTAAAACAGCCAACGGCGTATTaa > 1:2207820/1‑35 (MQ=255) ggCGTAGGTCGTAAAACAGCCAACGTCGTATTaaa > 1:2039732/1‑35 (MQ=255) gTAGGTCGTAAAACAGCCAACGTCGTATTAAacac > 1:4127039/1‑35 (MQ=255) gTAGGTCGTAAAACAGCCAACGTCGTATTAAacac > 1:3331435/1‑35 (MQ=255) gTAGGTCGTAAAACAGCCAACGTCGTATTAAacac > 1:20448227/1‑35 (MQ=255) gTAGGTCGTAAAACAGCCAACGTCGTATTAAaaac > 1:8757590/1‑35 (MQ=255) gTAGGTCGTAAAACAGCCAACGTCGTATTAAaaac > 1:18217937/1‑35 (MQ=255) tAGGTCGTAAAACAGCCAACGTCGTATTAAACACt > 1:3419339/1‑35 (MQ=255) gTCGTAAAACAGCCAACGTCGTATTAAACACTGCa > 1:1045965/1‑35 (MQ=255) cccacacccCAGCCAACGTCGTATTAAACACTGCa > 1:14410103‑M1/10‑35 (MQ=255) accacccccCAGCCAACGTCGTATTAAACACTGCa > 1:8744493‑M1/10‑35 (MQ=255) ccacacccCAGCCAACGTCGTATTAAACACTGCAt > 1:10131294‑M1/9‑35 (MQ=255) acaaacccCAGCCAACGTCGTATTAAACACTGCAt > 1:9950794‑M1/9‑35 (MQ=255) cccacccCAGCCAACGTCGTATTAAACACTGCAtt > 1:18851200‑M1/8‑35 (MQ=255) cacacccCAGCCAACGTCGTATTAAACACTGCAtt > 1:5513210‑M1/8‑35 (MQ=255) caaacccCAGCCAACGTCGTATTAAACACTGCAtt > 1:567148‑M1/8‑35 (MQ=255) cGTAAAACAGCCAACGTCGTATTAAACACTGCAtt > 1:16883578/1‑35 (MQ=255) gTAAAACAGCCAACGTCGTATTAAACACTGCATTc > 1:19827801/1‑35 (MQ=255) gTAAAACAGCCAACGTCGTATTAAAAACTGCATTc > 1:9944604/1‑35 (MQ=255) acacccCAGCCAACGTCGTATTAAACACTGCATTc > 1:19492857‑M1/7‑35 (MQ=255) cccccCAGCCAACGTCGTATTAAACACTGCATTCg > 1:11352624‑M1/6‑35 (MQ=255) ccacCAGCCAACGTCGTATTAAACACTGCATTCgg > 1:15263‑M1/5‑35 (MQ=255) acccCAGCCAACGTCGTATTAAACACTGCATTCgg > 1:7514103‑M1/5‑35 (MQ=255) aaaaCAGCCAACGTCGTATTAAACACTGCATTCgg > 1:3013798/1‑35 (MQ=255) aaaaCAGCCAACGTCGTATTAAACACTGCATTCgg > 1:14046811/1‑35 (MQ=255) aaaaCAGCCAACGTCGTATTAAACACTGCATTCgg > 1:14137580/1‑35 (MQ=255) aaaCAGCCAACGTCGTATTAAACACTGCATTCGGc > 1:4186189/1‑35 (MQ=255) aaaCAGCCAACGTCGTATTAAACACTGCATTCGGc > 1:3895129/1‑35 (MQ=255) aaaCAGCCAACGTCGTATTAAACACTCCATTCGGc > 1:10876982/1‑35 (MQ=255) ccCAGCCAACGTCGTATTAAACACTGCATTCGGCt > 1:5125971‑M1/3‑35 (MQ=255) ccCAGCCAACGTCGTATTAAACACTGCATTCGGCt > 1:2162256‑M1/3‑35 (MQ=255) ccCAGCCAACGTCGTATTAAACACTGCATTCGGCt > 1:9830077‑M1/3‑35 (MQ=255) ccCAGCCAACGTCGTATTAAACACTGCATTCGGCt > 1:5260723‑M1/3‑35 (MQ=255) cCAGCCAACGTCGTATTAAACACTGCATTCGGCTg > 1:1855035‑M1/2‑35 (MQ=255) aCAGCAAACGTCGTATTAAACACTGCATTCGGCTg < 1:9129630/35‑1 (MQ=255) CAGCCAACGTCGTATTAAACACTGCATTCGGCTgg < 1:4082793‑M1/35‑1 (MQ=255) CAGCCAACGTCGTATTAAACACTGCATTCGGCTgg > 1:3056948‑M1/1‑35 (MQ=255) CAGCCAACGTCGTATTAAACACTGCATTCGGCTgg > 1:7713431‑M1/1‑35 (MQ=255) | GCGCTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGCCAACGTCGTATTAAACACTGCATTCGGCTGG > REL606/1689044‑1689112 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |