New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3600745 = | 41 (0.400) | 9 (0.120) | 3/34 | NT | 18.7% | intergenic (+12/+39) | treF/yhjB | cytoplasmic trehalase/predicted DNA‑binding response regulator in two‑component regulatory system |
? | REL606 | 3792210 = | 49 (0.670) | coding (316/414 nt) | ECB_03532 | hypothetical protein |
TTGGTTTGTACGGCGAACCATAATATTTTTACAGCCAGCCGCTAACTTCCTGCTGGCTGTAAAATTATC > REL606/3600711‑3600779 | ttGGTTTGTCCGGCGAACCATAATATTTTTAcagc < 1:3468941/35‑1 (MQ=255) ttGGTTTGTACGGCGAACCATAATATTTTTAcagc < 1:15518854/35‑1 (MQ=255) ttGGTTTGTACGGCGAACCATAATATTTTTAcagc < 1:15498402/35‑1 (MQ=255) ttGGTTTGTACGGCGAACCATAATATTTTTAcagc < 1:14323821/35‑1 (MQ=255) ttGGTTTGTACGGCGAACCATAATATTTTTAcagc < 1:12889128/35‑1 (MQ=255) tGGTTTGTACGGCGAACCATAATATTTTTAcagcc > 1:4606770/1‑35 (MQ=255) ggTTTGTACGGCGAACCATAATATTTTTAcagcca > 1:919462/1‑35 (MQ=255) ggTTTGTACGGCGAACCATAATATTTTTAcagcca > 1:8327153/1‑35 (MQ=255) ggTTTGTACGGCGAACCATAATATTTTTAcagcca > 1:4831552/1‑35 (MQ=255) gTTTGTACGGCGAACCATAATATTTTTAcagccag > 1:15973104/1‑35 (MQ=255) gTTTGTACGGCGAACCATAATATTTTTAcagccag > 1:12127480/1‑35 (MQ=255) gTTTGTACGGCGAACCATAATATTTTTAcagccag > 1:6738073/1‑35 (MQ=255) gTTTGTACGGCGAACCATAATATTTTTAcagccag > 1:14030436/1‑35 (MQ=255) tttGTACGGCGAACCATAATATTTTTAcagccagc > 1:1736109/1‑35 (MQ=255) ttGTACGGCGAACCATAATATTTTTACagccagcc > 1:6957872/1‑35 (MQ=255) aCGGCGAACCATAATATTTTTACAGCCAGCCGCTa > 1:911840/1‑35 (MQ=255) cGGCGAACCATAATATTTTTACAGCCAGCCGCTaa > 1:3748438/1‑35 (MQ=255) cGGCGAACCATAATATTTTTACAGCCAGCCGCTaa > 1:8716884/1‑35 (MQ=255) ggCGAACCATAATATTTTTACAGCCAGCCGCTAAc > 1:13596294/1‑35 (MQ=255) ggCGAACCATAATATTTTTACAGCCAGCCGCTAAc > 1:10721783/1‑35 (MQ=255) gCGAACCATAATATTTTTACAGCCAGCCGCTAACt > 1:14138937/1‑35 (MQ=255) cGAACCATAATATTTTTACAGCCAGCCGCTAACtt > 1:10557928/1‑35 (MQ=255) cGAACCATAATATTTTTACAGCCAGCCGCTAACtt > 1:19933275/1‑35 (MQ=255) cGAACCATAATATTTTTACAGCCAGCCGCTAACtt > 1:15419894/1‑35 (MQ=255) cGAACCATAATATTTTTACAGCCAGCCGCTAACtt > 1:14895827/1‑35 (MQ=255) cGAACCATAATATTTTTACAGCCAGCCGCTAACtt > 1:13900155/1‑35 (MQ=255) gAACCATAATATTTTTACAGCCAGCCGCTAACTTc > 1:8790127/1‑35 (MQ=255) gAACCATAATATTTTTACAGCCAGCCGCTAACTTc > 1:5308233/1‑35 (MQ=255) gAACCATAATATTTTTACAGCCAGCCGCTAACTTc > 1:1666016/1‑35 (MQ=255) gAACCATAATATTTTTACAGCCAGCCGCTAACTTc > 1:13958360/1‑35 (MQ=255) aaCCATAATATTTTTACAGCCAGCCGCTAACTTcc > 1:1609582/1‑35 (MQ=255) aCCATAATATTTTTACAGCCAGCCGCTAACTTCct > 1:8197758/1‑35 (MQ=255) aCCATAATATTTTTACAGCCAGCCGCTAACTTCct > 1:5583556/1‑35 (MQ=255) ccATAATATTTTTACAGCCAGCCGCTAACTTCctg > 1:9835563/1‑35 (MQ=255) ccATAATATTTTTACAGCCAGCCGCTAACTTCctg > 1:12321670/1‑35 (MQ=255) cATAATATTTTTACAGCCATCCGCTAACTTCctgc > 1:10872027/1‑35 (MQ=255) cATAATATTTTTACAGCCAGCCGCTAACTTCctgc > 1:11687946/1‑35 (MQ=255) cATAATATTTTTACAGCCAGCCGCTAACTTCctgc > 1:8071246/1‑35 (MQ=255) cATAATATTTTTACAGCCAGCCGCTAACTTCctgc > 1:13354106/1‑35 (MQ=255) cATAATATTTTTACAGCCAGCCGCTAACTTCctgc > 1:20495158/1‑35 (MQ=255) ataataTTTTTACAGCCAGCCGCTAACTTCctgct > 1:4854408/1‑35 (MQ=255) taataTTTTTACAGCCAGCCGCTAACTTCctgctg > 1:1735537/1‑35 (MQ=255) aataTTTTTACAGCCAGCCGCTAACTTCCTgctgg > 1:7808965/1‑35 (MQ=255) aataTTTTTACAGCCAGCCGCTAACTTCCTgctgg > 1:11887530/1‑35 (MQ=255) atatTTTTACAGCCAGCCGCTAACTTCCTgctggc > 1:17490043/1‑35 (MQ=255) atatTTTTACAGCCAGCCGCTAACTTCCTgctggc > 1:17163695/1‑35 (MQ=255) tatTTTTACAGCCAGCCGCTAACTTCCTgctggct > 1:10915206/1‑35 (MQ=255) ttttccccacCCAGCCGCTAACTTCCTgctggctg > 1:251892‑M1/11‑35 (MQ=255) tttcccccagCCAGCCGCTAACTTCCTgctggctg > 1:19324930‑M1/11‑35 (MQ=255) tttcccccacCCAGCCGCTAACTTCCTgctggctg > 1:18383786‑M1/11‑35 (MQ=255) atTTTTACAGCCAGCCGCTAACTTCCTgctggctg > 1:18539837/1‑35 (MQ=255) tttttACAGCCAGCCGCTAACTTCCTgctggctgg > 1:14515299/1‑34 (MQ=255) tttccccacCCAGCCGCTAACTTCCTGCTGGCTGt > 1:4584055‑M1/10‑35 (MQ=255) tttccccacCCAGCCGCTAACTTCCTGCTGGCTGt > 1:11500917‑M1/10‑35 (MQ=255) ttcccccacCCAGCCGCTAACTTCCTGCTGGCTGt > 1:18986811‑M1/10‑35 (MQ=255) ttcccccacCCAGCCGCTAACTTCCTGCTGGCTGt > 1:7128610‑M1/10‑35 (MQ=255) ttttACAGCCAGCCGCTAACTTCCTgctggctggg > 1:8615783/1‑33 (MQ=255) ttttACAGCCAGCCGCTAACTTCCTgctggctggg > 1:1716668/1‑33 (MQ=255) ttttACAGCCAGCCGCTAACTTCCTgctggctggg > 1:19146348/1‑33 (MQ=255) ttttACAGCCAGCCGCTAACTTCCTgctggctggg > 1:7632138/1‑33 (MQ=255) tttACAGCCAGCCGCTAACTTCCTgctggctgggg > 1:9765109/1‑32 (MQ=255) tttACAGCCAGCCGCTAACTTCCTgctggctgggg > 1:18911333/1‑32 (MQ=255) ccccagCCAGCCGCTAACTTCCTGCTGGCTGTaaa > 1:16482691‑M1/7‑35 (MQ=255) ccccacCCAGCCGCTAACTTCCTGCTGGCTGTaaa > 1:15179166‑M1/7‑35 (MQ=255) cccccCCAGCCGCTAACTTCCTGCTGGCTGTaaaa > 1:3284442‑M1/6‑35 (MQ=255) cccacCCAGCCGCTAACTTCCTGCTGGCTGTaaaa > 1:17511086‑M1/6‑35 (MQ=255) cccacCCAGCCGCTAACTTCCTGCTGGCTGTaaaa > 1:1828605‑M1/6‑35 (MQ=255) cccacCCAGCCGCTAACTTCCTGCTGGCTGTaaaa > 1:17291307‑M1/6‑35 (MQ=255) ccacCCAGCCGCTAACTTCCTGCTGGCTGTAAAAt > 1:3805542‑M1/5‑35 (MQ=255) cccCCAGCCGCTAACTTCCTGCTGGCTGTAAAAtt > 1:13270661‑M1/4‑35 (MQ=255) gccagccGCTAACTTCCTGCTGGCTGTAAAATTAt < 1:711120/35‑1 (MQ=255) gccagccGCTAACTTCCTGCTGGCTGTAAAATTAt < 1:8069732/35‑1 (MQ=255) gccagccGCTAACTTCCTGCTGGCTGTAAAATTAt < 1:11672414/35‑1 (MQ=255) cCCAGCCGCTAACTTCCTGCTGGCTGTAAAATTAt > 1:14859057‑M1/2‑35 (MQ=255) cCCAGCCGCTAACTTCCTGCTGGCTGTAAAATTAt > 1:11960457‑M1/2‑35 (MQ=255) CCAGCCGCTAACTTCCTGCTGGCTGTAAAATTATc > 1:3429137‑M1/1‑35 (MQ=255) | TTGGTTTGTACGGCGAACCATAATATTTTTACAGCCAGCCGCTAACTTCCTGCTGGCTGTAAAATTATC > REL606/3600711‑3600779 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |