Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,648,342 | IS1 (–) +9 bp | 28.2% | intergenic (+195/‑221) | ynfM → / → asr | predicted transporter/acid shock protein precursor |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1323488 | NA (NA) | 22 (0.210) | 18/48 | NT | 26.6% | noncoding (768/768 nt) | IS1 | repeat region |
? | REL606 | = 1648350 | 38 (0.590) | intergenic (+203/‑221) | ynfM/asr | predicted transporter/acid shock protein precursor | |||||
* | ? | REL606 | 1648342 = | 36 (0.600) | 7 (0.090) | 6/36 | NT | 13.1% | intergenic (+195/‑229) | ynfM/asr | predicted transporter/acid shock protein precursor |
? | REL606 | = 3024712 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
CATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1323455‑1323488 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACAAAGCGGTAGAATAACTGCGCATCAGTAATA < REL606/1648350‑1648317 CATAAAACACTATCAATAAGTTTGAGTCATTACCT > 1:3850008/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:15920930/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:16078086/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:16716876/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:17132695/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:17408628/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:17800940/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:18021606/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:18358241/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:18530800/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:8424231/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:18986280/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:19809891/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:19853110/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:19949941/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:19981360/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:2038462/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:207264/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:792542/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:285385/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:3439584/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:3791423/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:4112570/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:7703726/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:493158/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:7442237/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:7168882/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:6351766/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:14078689/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:9111710/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:1557915/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:9907913/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:10648656/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:11035387/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:1539727/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:15313148/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:15261908/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:12735630/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT > 1:9434045/1‑35 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:15001548/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCT < 1:14612108/35‑1 CATAAAACACTATCAATAAGTTGGAGCCATTACCT > 1:537552/1‑35 CATAAAACACTATAAATAAGTTGGAGTCATTACCT < 1:15022287/35‑1 ATAAAACAGTATCAATAAGTTGGAGTCATTACCTA > 1:6462329/1‑35 ATAAAACACTATCAATAAGTTTGAGTCATTACCTA > 1:15823261/1‑35 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA > 1:779712/1‑35 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA < 1:9468442/35‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA > 1:11262055/1‑35 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA < 1:111214/35‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA > 1:7681795/1‑35 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA < 1:3112585/35‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA < 1:13881275/35‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA > 1:15837260/1‑35 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA < 1:16928929/35‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA > 1:8804736/1‑35 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA < 1:8505540/35‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA < 1:1802841/35‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA < 1:19612417/35‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA > 1:14544647/1‑35 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA < 1:20383768/35‑1 TAAAACACTATCAATAAGTTTGAGTCATTACCTAC > 1:3015911/1‑35 TAAAACACTATCAATAAGTTGGAGTCATTACCTAC < 1:5801848/35‑1 TAAAACACTATCAATAAGTTGGAGTCATTACCTAC > 1:19263525/1‑35 TAAAACACTATCAATAAGTTGGAGTCATTACCTAC < 1:19466540/35‑1 TAAAACACTATCAATAAGTTGGAGTCATTACCTAC < 1:3523888/35‑1 TAAAACACTATCAATAAGTTGGAGTCATTACCTAC < 1:324399/35‑1 AAAACACTATCAATAAGTTGGAGTCATTACCTACA < 1:14204378/35‑1 AAAACACTATCAATAAGTTGGAGTCATTACCTACA > 1:15507298/1‑35 AAAACACTATCAATAAGTTGGAGTCATTACCTACA > 1:9742330/1‑35 AAAACACTATCAATAAGTTGGAGTCATTACCTACA < 1:19839231/35‑1 AAAACACTATCAATAAGTTGGAGTCATTACCTACA > 1:13409466/1‑35 AAACACTATCAATAAGTTGGAGTCATTACCTACAA < 1:4017414/35‑1 AAACACTATCAATAAGTTGGAGTCATTACCTACAA > 1:15227924/1‑35 AAACACTATCAATAAGTTGGAGTCATTACCTACAA < 1:7850476/35‑1 AAACACTATCAATAAGTTGGAGTCATTACCTACAA < 1:12797889/35‑1 AAACACTATCAATAAGTTGGAGTCATTACCTACAA > 1:6278106/1‑35 ACACTATCAATAAGTTGGAGTCATTACCTACAAAG > 1:894323/1‑35 ACACTATCAATAAGTTGGAGTCATTACCTACAAAG < 1:4271427/35‑1 CACTATCAATAAGTTGGAGTCATTACCTACAAAGC < 1:6341290/35‑1 TATCAATAAGTTGGAGTCATTACCTACAAAGCTGT > 1:10105986/1‑35 ATCAATAAGTTGGAGTCATTACCTACAAAGCGGTA < 1:2867786/35‑1 ATCAATAAGTTGGAGTCATTACCTACAAAGCGGTA < 1:12652966/35‑1 TCAATAAGTTGGAGTCATTACCTACAAAGCGGTAG < 1:4945087/35‑1 AATAAGTTGGAGTCATTACCTACAAAGCGGTAGAA < 1:5415439/35‑1 ATAAGTTGGAGTCATTACCTACAAAGCGGTAGAAT < 1:4433953/35‑1 ATAAGTTGGAGTCATTACCCACAAAGCGGTAGAAT < 1:13404269/35‑1 AAGTTGGAGTCATTACCTACAAAGCGGTAGAATAA > 1:4869908/1‑35 AAGTTGGAGTCATTACCTACAAAGCGGTAGAATAA > 1:4531990/1‑35 GTTGGAGTCATTACCTACAAAGCGGTAGAATAACT < 1:1121310/35‑1 TTGGAGTCATTACCTACAAAGCGGTAGAATAACTG < 1:694466/35‑1 TGGAGTCATTACCTACAAAGCGGTAGAATAACTGC < 1:9909824/35‑1 GGAGTCATTACCTACAAAGCGGTAGAATAACTGCG > 1:6917878/1‑35 AGTCATTACCTACAAAGCGGTAGAATAACTGCGCA < 1:8743250/35‑1 GTCATTACCTACAAAGCGGTAGAATAACTGCGCAT > 1:17300234/1‑35 GTCATTACCTACAAAGCGGTAGAATAACTGCGCAT < 1:18626996/35‑1 TCATTACCTACAAAGCGGTAGAATAACTGCGCATC < 1:17250351/35‑1 TCATTACCTACAAAGCGGTAGAATAACTGCGCATC < 1:10175318/35‑1 ATTACCTACAAAGCGGTAGAATAACTGCGCATCAG > 1:2176260/1‑35 CTACAAAGCGGTAGAATAACTGCGCATCAGTAATA < 1:14501247/35‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1323455‑1323488 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACAAAGCGGTAGAATAACTGCGCATCAGTAATA < REL606/1648350‑1648317 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |