New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 445976 =79 (0.770)9 (0.120) 4/36 NT 13.8% coding (944/1287 nt) amtB ammonium transporter
?REL606 3083447 = 53 (0.690)coding (197/495 nt) yqhA hypothetical protein

Only 100 of 134 total aligned reads displayed.

ACCGGAAAACATCACCATCACCAGCAAACCGCCAACCAGCGTCATATCCACCAGCGACAGCAACACGAG  >  REL606/3083413‑3083481
                                  |                                  
aCCGTAAAACATCACCATCACCAGCAAACCGCCaa                                    >  1:9236371/1‑35 (MQ=255)
aCCGGAAAACATCACCATCACCAGCAAACCGCCaa                                    >  1:15360862/1‑35 (MQ=255)
aCCGGAAAACATCACCATCACCAGCAAACCGCCaa                                    >  1:16017803/1‑35 (MQ=255)
aCCGGAAAACATCACCATCACCAGCAAACCGCCaa                                    >  1:1260663/1‑35 (MQ=255)
 ccGGAAAACATCACCATCACCAGCAAACCGCCAAc                                   >  1:8265690/1‑35 (MQ=255)
 ccGGAAAACATCACCATCACCAGCAAACCGCCAAc                                   >  1:1400230/1‑35 (MQ=255)
 ccGGAAAACATCACCATCACCAGCAAACCGCCAAc                                   >  1:18704846/1‑35 (MQ=255)
 ccGGAAAACATCACCATCACCAGCAAACCGCCAAc                                   >  1:3091365/1‑35 (MQ=255)
 ccGGAAAACATCACCAACACCAGCAAACCGCCAAc                                   >  1:171894/1‑35 (MQ=255)
  cGGAAAACATCACCATCACCAGCAAACCGCCAAct                                  >  1:7989480/1‑34 (MQ=255)
  cGGAAAACATCACCATCACCAGCAAACCGCCAAcc                                  >  1:6267572/1‑35 (MQ=255)
  cGGAAAACATCACCATCACCAGCAAACCGCCAAcc                                  >  1:1385821/1‑35 (MQ=255)
   ggAAAACATCACCATCACCAGCAAACCGCCAACCa                                 >  1:5487031/1‑35 (MQ=255)
    gAAAACATCACCATCACCAGCAAACCGCCAACCAg                                >  1:17245544/1‑35 (MQ=255)
     aaaaCATCACCATCACCAGCAAACCGCCAACCAGc                               >  1:5193842/1‑35 (MQ=255)
     aaaaCATCACCATCACCAGCAAACCACCAACCAGc                               >  1:3590260/1‑35 (MQ=255)
      aaaCATCACCATCACCAGCAAACCGCCAACCAGCg                              >  1:11245412/1‑35 (MQ=255)
        aCATCACCATCACCAGCAAACCGCCAACCAGCGTc                            >  1:13544301/1‑35 (MQ=255)
        aCATCACCATCACCAGCAAACCGCCAACCAGCGTc                            >  1:1419086/1‑35 (MQ=255)
         catcaccatcacCAGCAAACCGCCAACCAGCGTCa                           >  1:9216898/1‑35 (MQ=255)
         catcaccatcacCAGCAAACCGCCAACCAGCGTCa                           >  1:5784107/1‑35 (MQ=255)
         catcaccatcacCAGCAAACCGCCAACCAGCGTCa                           >  1:11542625/1‑35 (MQ=255)
         catcaccatcacCAGCAAACCGCCAACCAGCGTCa                           >  1:10235556/1‑35 (MQ=255)
           tcaccatcaccaGCAAACCGCCAACCAGCGTCata                         >  1:8311964/1‑35 (MQ=255)
            caccatcaccaGCAAACCGCCAACCAGCGTCatat                        >  1:20003672/1‑35 (MQ=255)
            caccatcaccaGCAAACCGCCAACCAGCGTCatat                        >  1:11241729/1‑35 (MQ=255)
             cccatccccaCAAACCCGCCAACCAGCGTCATATc                       <  1:19217198/34‑1 (MQ=12)
             accatcaccaGCAAACCGCCAACCAGCGTCATATc                       >  1:15623885/1‑35 (MQ=255)
             accatcaccaGCAAACCGCCAACCAGCGTCATATc                       >  1:5721320/1‑35 (MQ=255)
             accatcaccaGCAAACCGCCAACCAGCGTCATATc                       >  1:10260125/1‑35 (MQ=255)
             accatcaccaGCAAACCGCCAACCAGCGTCATATc                       >  1:13964080/1‑35 (MQ=255)
              ccatcactaGCAAACCGCCAACCAGCGTCATATcc                      >  1:14702879/1‑35 (MQ=255)
              ccatcaccaGCAAACCGCCAACCAGCGTCATATcc                      >  1:19345143/1‑35 (MQ=255)
              ccatcaccaGCAAACCGCCAACCAGCGTCATATcc                      >  1:4789492/1‑35 (MQ=255)
              ccaccaccaGAAACCCGCCAACCAGCGTCATATcc                      <  1:3240604/35‑1 (MQ=21)
               catcaccaGCAAACCGCCAACCAGCGTCATATcca                     >  1:4375651/1‑35 (MQ=255)
               catcaccaGCAAACCGCCAACCAGCGTCATATcca                     >  1:7310806/1‑35 (MQ=255)
               catcaccaGCAAACCGCCAACCAGCGTCATATcca                     >  1:11449523/1‑35 (MQ=255)
               catcaccaGCAAACCGCCAACCAGCGTCATATcca                     >  1:20567467/1‑35 (MQ=255)
               catcaccaGCAAACCGCCAACCAGCGTCATATcca                     >  1:916530/1‑35 (MQ=255)
                atcaccaGCAAACCGCCAACCAGCGTCATATccac                    >  1:1070274/1‑35 (MQ=255)
                atcaccaGCAAACCGCCAACCAGCGTCATATccac                    >  1:8848635/1‑35 (MQ=255)
                 tcaccaGCAAACCGCCAACCAGCGTCATATccacc                   >  1:9395593/1‑35 (MQ=255)
                 tcaccaGCAAACCGCCAACCAGCGTCATATccacc                   >  1:14701166/1‑35 (MQ=255)
                 tcaccaGCAAACCGCCAACCAGCGTCATATccacc                   >  1:2322138/1‑35 (MQ=255)
                 tcaccaGCAAACCGCCAACCAGCGTCATATccacc                   >  1:20193705/1‑35 (MQ=255)
                 ccaccaAAAACCCGCCAACCAGCGTCATATccacc                   <  1:3343930/34‑1 (MQ=25)
                  caccaGCAAACCGCCAACCAGCGTCATATccacca                  >  1:12156843/1‑35 (MQ=255)
                  caccaGCAAACCGCCAACCAGCGTCATATccacca                  >  1:10525793/1‑35 (MQ=255)
                  caccaGCAAACCGCCAACCAGCGTCATATccacca                  >  1:8771073/1‑35 (MQ=255)
                   cccagaaacccgccaACCAGCGTCATATCCACCAg                 <  1:7040580‑M2/20‑1 (MQ=255)
                   cccacaaacccgccaACCAGCGTCATATCCACCAg                 <  1:19888549‑M2/20‑1 (MQ=255)
                   accaGCAAACCGCCAACCAGCGTCATATCCACCAg                 >  1:17768337/1‑35 (MQ=255)
                    ccagaaacccgccaACCAGCGTCATATCCACCAGc                <  1:7898509‑M2/21‑1 (MQ=255)
                    ccacaaacccgccaACCAGCGTCATATACACCAGc                <  1:5969181‑M2/21‑1 (MQ=255)
                    ccaGCAAACCGCCAACCAGCGTCATATCCACCAGc                >  1:3338808/1‑35 (MQ=255)
                    ccaGCAAACCGCCAACCAGCGTCATATCCACCAGc                >  1:12282369/1‑35 (MQ=255)
                     cacaaccccgccaACCAGCGTCATATCCACCAGCg               <  1:6501957‑M2/22‑1 (MQ=255)
                     cacaaacccgccaACCAGCGTCATATCCACCAGCg               <  1:14194175‑M2/22‑1 (MQ=255)
                     caGCAAACCGCCAACCAGCGTCATATCCACCAGCg               >  1:7928925/1‑35 (MQ=255)
                       gCAAACCGCCAACCAGCGTCATATCCACCAGCGAc             >  1:6242604/1‑35 (MQ=255)
                       gCAAACCGCCAACCAGCGTCATATCCACCAGCGAc             >  1:6480026/1‑35 (MQ=255)
                        cAAACCGCCAACCAGCGTCATATCCACCAGCGACa            >  1:14415123/1‑35 (MQ=255)
                        cAAACCGCCAACCAGCGTCATATCCACCAGCGACa            >  1:2615598/1‑35 (MQ=255)
                        cAAACCGCCAACCAGCGTCATATCCACCAGCGACa            >  1:20422890/1‑35 (MQ=255)
                        cAAACCGCCAACCAGCGTCATATCCACCAGCGACa            >  1:5376875/1‑35 (MQ=255)
                        cAAACCGCCAACCAGCGTCATATCCACCAGCGACa            >  1:6389214/1‑35 (MQ=255)
                        aaccccgccaACCAGCGTCATATCCACCAGCGACa            <  1:8651321‑M2/25‑1 (MQ=255)
                        aaccccgccaACCAGCGTCATATCCACCAGCGACa            <  1:6804034‑M2/25‑1 (MQ=255)
                         accccgccaACCAGCGTCATATCCACCAGCGACAg           <  1:11470647‑M2/26‑1 (MQ=255)
                         aacccgccaCCCAGCGTCATATCCACCAGCGACAg           <  1:15626212‑M2/26‑1 (MQ=255)
                         aaaCCGCCAACCAGCGTCATATCCACCAGCGACAg           >  1:747694/1‑35 (MQ=255)
                         aaaCCGCCAACCAGCGTCATATCCACCAGCGACAg           >  1:9663091/1‑35 (MQ=255)
                         aaaCCGCCAACCAGCGTCATATCCACCAGCGACAg           >  1:4226453/1‑35 (MQ=255)
                          aaCCGCCAACCAGCGTCATATCCACCAGCGACAGc          >  1:2445479/1‑35 (MQ=255)
                           cccgccaCCCAGCGTCATATCCACCAGCGACAGCa         <  1:10939279‑M2/28‑1 (MQ=255)
                           cccgccaACCAGCGTCATATCCACCAGCGACAGCa         <  1:6673678‑M2/28‑1 (MQ=255)
                           ccccccaACCAGCGTCATATCCACCAGCGACAGCa         <  1:14611056‑M2/28‑1 (MQ=255)
                           aCCGCCAACCAGCGTCATATCCACCAGCGACAGCa         >  1:18757275/1‑35 (MQ=255)
                           aCCGCCAACCAGCGTCATATCCACCAGCGACAGCa         >  1:13309486/1‑35 (MQ=255)
                           aCCGCCAACCAGCGTCATATCCACCAGCGACAGCa         >  1:1270572/1‑35 (MQ=255)
                            ccgccaCCCAGCGTCATATCCACCAGCGACAGCaa        <  1:3145092‑M2/29‑1 (MQ=255)
                            ccgccaACCAGCGTCATATCCACCAGCGACAGCaa        >  1:817903‑M2/7‑35 (MQ=255)
                            ccgccaACCAGCGTCATATCCACCAGCGACAGCaa        <  1:1689436‑M2/29‑1 (MQ=255)
                            ccgccaACCAGCGTCATATCCACCAGCGACAGCaa        <  1:17854978‑M2/29‑1 (MQ=255)
                            ccgccaACCAGCGTCATATCCACCAGCGACAGCaa        >  1:18144691‑M2/7‑35 (MQ=255)
                             ngccaACCAGCGTCATATCCACCAGCGACAGCAac       >  1:10692519‑M2/6‑35 (MQ=255)
                             cgccaACCAGCGTCATATCCACCAGCGACAGCAac       >  1:13491376‑M2/6‑35 (MQ=255)
                             cgccaACCAGCGTCATATCCACCAGCGACAGCAac       >  1:15300799‑M2/6‑35 (MQ=255)
                              gccaACCAGCGTCATATCCACCAGCGACAGCAaca      >  1:13710709‑M2/5‑35 (MQ=255)
                               ccaCCCAGCGTCATATCCACCAGCGACAGCAacac     <  1:12750830‑M2/32‑1 (MQ=255)
                               ccaACCAGCGTCATATCCACCAGCGACAGCAacac     <  1:10286828‑M2/32‑1 (MQ=255)
                               ccaACCAGCGTCATATCCACCAGCGACAGCAacac     <  1:1564620‑M2/32‑1 (MQ=255)
                               ccaACCAGCGTCATATCCACCAGCGACAGCAacac     >  1:17563606‑M2/4‑35 (MQ=255)
                               ccaACCAGCGTCATATCCACCAGCGACAGCAacac     >  1:19888142‑M2/4‑35 (MQ=255)
                               ccaACCAGCGTCATATCCACCAGCGACAGCAacac     >  1:5867750‑M2/4‑35 (MQ=255)
                               ccaACCAGCGTCATATCCACCAGCGACAGCAacac     <  1:5411364‑M2/32‑1 (MQ=255)
                                 aACCAGCGTCATATCCACCAGCGACAGCAACACGa   >  1:15460935‑M2/2‑35 (MQ=255)
                                 aACCAGCGTCATATCCACCAGCGACAGCAACACGa   >  1:15744411‑M2/2‑35 (MQ=255)
                                  aCCAGCGTCATATCCACCAGCGACAGCAACACGAg  <  1:17076173/35‑1 (MQ=255)
                                  |                                  
ACCGGAAAACATCACCATCACCAGCAAACCGCCAACCAGCGTCATATCCACCAGCGACAGCAACACGAG  >  REL606/3083413‑3083481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.