New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2017663 =30 (0.290)18 (0.200) 5/42 NT 23.5% intergenic (‑158/+109) yeeF/yeeY predicted amino‑acid transporter/predicted DNA‑binding transcriptional regulator
?REL606 3912266 = 91 (1.010)intergenic (+46/‑94) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

Only 100 of 101 total aligned reads displayed.

TTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTT  >  REL606/2017629‑2017696
                                  |                                 
ttGGTATGAATGATTGGTTTGAAGCAAAAAATAAc                                   <  1:16884627/35‑1 (MQ=255)
 tGGTATGAATGATTGGTTTGAAGCAAAAAATAAcc                                  >  1:19855160/1‑35 (MQ=255)
 tGGTATGAATGATTGGTTTGAAGCAAAAAATAAcc                                  >  1:9446561/1‑35 (MQ=255)
 tGGTATGAATGATTGGTTTGAAGCAAAAAATAAcc                                  <  1:5804076/35‑1 (MQ=255)
 tGGTATGAATGATTGGTTTGAAGCAAAAAATAAcc                                  >  1:13987185/1‑35 (MQ=255)
  ggTATGAATGATTGGTTTGAAGCAAAAAATAACCg                                 >  1:17868938/1‑35 (MQ=255)
  ggTATGAATGATTGGTTTGAAGCAAAAAATAACCg                                 <  1:3516634/35‑1 (MQ=255)
  ggTATGAATGATTGGTTTGAAGCAAAAAATAACCg                                 >  1:6479511/1‑35 (MQ=255)
   gTATGAATGATTGGTTTGAAGCAAAAAATAACCGa                                >  1:16313025/1‑35 (MQ=255)
    tATGAATGATTGGTTTTAAGCAAAAAATAACCGAc                               >  1:485115/1‑35 (MQ=255)
    tATGAATGATTGGTTTGAAGCAAAAAATAACCGAc                               >  1:16625109/1‑35 (MQ=255)
    tATGAATGATTGGTTTGAAGCAAAAAATAACCGAc                               >  1:8284870/1‑35 (MQ=255)
    tATGAATGATTGGTTTGAAGCAAAAAATAACCGAc                               >  1:13541825/1‑35 (MQ=255)
    tATGAATGATTGGTTTGAAGCAAAAAATAACCGAc                               >  1:13452363/1‑35 (MQ=255)
    tATGAATGATTGGTTTGAAGCAAAAAATAACCGAc                               >  1:6648635/1‑35 (MQ=255)
      tgaatgaTTGGTTTGAAGCAAAAAATAACCGACGc                             >  1:5807193/1‑35 (MQ=255)
      tgaatgaTTGGTTTGAAGCAAAAAATAACCGACGc                             >  1:10015809/1‑35 (MQ=255)
      tgaatgaTTGGTTTGAAGCAAAAAATAACCGACGc                             >  1:8017254/1‑35 (MQ=255)
      tgaatgaTTGGTTTGAAGCAAAAAATAACCGACGc                             >  1:11966605/1‑35 (MQ=255)
       gaatgaTTGGTTTGAAGCAAAAAATAACCGACGCt                            >  1:16954707/1‑35 (MQ=255)
       gaatgaTTGGTTTGAAGCAAAAAATAACCGACGCt                            >  1:14942341/1‑35 (MQ=255)
        aatgaTTGGTTTGAAGCAAAAAATAACCGACGCtg                           >  1:8048352/1‑35 (MQ=255)
        aatgaTTGGTTTGAAGCAAAAAATAACCGACGCtg                           >  1:6840273/1‑35 (MQ=255)
         atgaTTGGTTTGAAGCAAAAAATAACCGACGCtga                          >  1:19788736/1‑35 (MQ=255)
         atgaTTGGTTTGAAGCAAAAAATAACCGACGCtga                          >  1:2174060/1‑35 (MQ=255)
         atgaTTGGTTTGAAGCAAAAAATAACCGACGCtga                          >  1:16892731/1‑35 (MQ=255)
         atgaTTGGTTTGAAGCAAAAAATAACCGACGCtga                          >  1:3649521/1‑35 (MQ=255)
         atgaTTGGTTTGAAGCAAAAAATAACCGACGCtga                          >  1:13908688/1‑35 (MQ=255)
          tgaTTTGTTTGAAGCAAAAAATAACCGACGCtgat                         >  1:5170079/1‑35 (MQ=255)
          tgaTTGGTTTGAAGCAAAAAATAACCGACGCtgat                         >  1:18304141/1‑35 (MQ=255)
          tgaTTGGTTTGAAGCAAAAAATAACCGACGCtgat                         >  1:12981465/1‑35 (MQ=255)
          tgaTTGGTTTGAAGCAAAAAATAACCGACGCtgat                         >  1:8514613/1‑35 (MQ=255)
           gaTTGGTTTGAAGCAAAAAATAACCGACGCttatg                        >  1:13133895/1‑35 (MQ=255)
           gaTTGGTTTGAAGCAAAAAATAACCGACGCtgatg                        >  1:14004473/1‑35 (MQ=255)
           gaTTGGTTTGAAGCAAAAAATAACCGACGCtgatg                        >  1:230471/1‑35 (MQ=255)
           gaTTGGTTTGAAGCAAAAAATAACCGACGCtgatg                        >  1:16627390/1‑35 (MQ=255)
           gaTTGGTTTGAAGCAAAAAATAACCGACGCtgatg                        >  1:7051130/1‑35 (MQ=255)
            aTTGGTTTGAAGCAAAAAATAACCGACGCtgatga                       >  1:15936960/1‑35 (MQ=255)
            aTTGGTTTGAAGCAAAAAATAACCGACGCtgatga                       >  1:2465977/1‑35 (MQ=255)
            aTTGGTTTGAAGCAAAAAATAACCGACGCtgatga                       >  1:10405637/1‑35 (MQ=255)
              tGGTTTGAAGCAAAAAATAACCGACGCTGATGaaa                     >  1:6242998/1‑35 (MQ=255)
              tGGTTTGAAGCAAAAAATAACCGACGCTGATGaaa                     >  1:9818029/1‑35 (MQ=255)
               ggTTTGAAGCAAAAAATAACCGACGCTGATGAAAc                    >  1:7037013/1‑35 (MQ=255)
               ggTTTGAAGCAAAAAATAACCGACGCTGATGAAAc                    >  1:5132981/1‑35 (MQ=255)
                gTTTGAAGCAAAAAATAACCGACGCTGATGAAACG                   >  1:697839‑M1/1‑35 (MQ=255)
                 tttGAAGCAAAAAATAACCGACGCTGATGAAACGT                  >  1:16845628‑M1/1‑35 (MQ=255)
                 tttGAAGCAAAAAATAACCGACGCTGATGAAACGT                  >  1:15411166‑M1/1‑35 (MQ=255)
                  ttGAAGCAAAAAATAACCGACGCTGATGAAACGTC                 >  1:4884183‑M1/1‑35 (MQ=255)
                  ttGAAGCAAAAAATAACCGACGCTGATGAAACGTC                 >  1:11198432‑M1/1‑35 (MQ=255)
                   tGAAGCAAAAAATAACCGACGCTGATGAAACGTCG                >  1:9767672‑M1/1‑35 (MQ=255)
                   tGAAGCAAAAAATAACCGACGCTGATGAAACGTCG                >  1:1566639‑M1/1‑35 (MQ=255)
                   tGAAGCAAAAAATAACCGACGCTGATGAAACGTCG                >  1:17919033‑M1/1‑35 (MQ=255)
                   tGAAGCAAAAAATAACCGACGCTGATGAAACGTCG                >  1:18642576‑M1/1‑35 (MQ=255)
                    gAAGCAAAAAATAACCGACGCTGATGAAACGTCGG               >  1:18311982‑M1/1‑35 (MQ=255)
                     aaaaaaaaaacccCCGACGCTGATGAAACGTCGGt              >  1:6223666‑M1/14‑35 (MQ=255)
                     aaaaaaaaaacccCCGACGCTGATGAAACGTCGGt              >  1:16882405‑M1/14‑35 (MQ=255)
                     aaGCAAAAAATAACCGACGCTGATGAAACGTCGGg              >  1:10554303‑M1/1‑34 (MQ=255)
                     aaGCAAAAAATAACCGACGCTGATGAAACGTCGGg              >  1:10668556‑M1/1‑34 (MQ=255)
                      aaaaaaaaccccCCGACGCTGATGAAACGTCGGtt             >  1:5180529‑M1/13‑35 (MQ=255)
                      aaaaaaaaacccCCGACGCTGATGAAACGTCGGtt             >  1:10243371‑M1/13‑35 (MQ=255)
                      aGCAAAAAATAACCGACGCTTATGAAACGTCGGgg             >  1:2782853‑M1/1‑33 (MQ=255)
                      aGCAAAAAATAACCGACGCTGATGAAACGTCGGgg             >  1:14884115‑M1/1‑33 (MQ=255)
                      aGCAAAAAATAACCGACGCTGATGAAACGTCGGgg             >  1:18456030‑M1/1‑33 (MQ=255)
                      aGCAAAAAATAACCGACGCTGATGAAACGTCGGgg             >  1:6752896‑M1/1‑33 (MQ=255)
                       gCAAAAAATAACCGACGCTGATGAAACGTCGGggt            >  1:13223610‑M1/1‑32 (MQ=255)
                       gCAAAAAATAACCGACGCTGATGAAACGTCGGggt            >  1:3748288‑M1/1‑32 (MQ=255)
                       aaaaaaaacccCCGACGCTGATGAAACGTCGGttt            >  1:5702640‑M1/12‑35 (MQ=255)
                        cAAAAAATAACCGACGCTGATGAAACGTCGGggtt           >  1:19347786‑M1/1‑31 (MQ=255)
                        aaaaaaccccCCGACGCTGATGAAACGTCGGtttt           >  1:1111737‑M1/11‑35 (MQ=255)
                        aaaaaaccccCCGACGCTGATGAAACGTCGGtttt           >  1:10421962‑M1/11‑35 (MQ=255)
                        aaaaaaacccCCGACGCTGATGAAACGTCGGtttt           >  1:15893402‑M1/11‑35 (MQ=255)
                        aaaaaaacccCCGACGCTGATGAAACGTCGGtttt           >  1:12780314‑M1/11‑35 (MQ=255)
                        aaaaaaacccCCGACGCTGATGAAACGTCGGtttt           >  1:8058193‑M1/11‑35 (MQ=255)
                         aaaaaaTAACCGACGCTGATGAAACGTCGGggttt          >  1:13783270‑M1/1‑30 (MQ=255)
                         aaaaaaTAACCGACGCTGATGAAACGTCGGggttt          >  1:15289764‑M1/1‑30 (MQ=255)
                          aaaaccccCCGACGCTGATGAAACGTCGGTTTTTa         >  1:5798182‑M1/9‑35 (MQ=255)
                          aaaaacccCCGACGCTGATGAAACGTAGGTTTTTa         >  1:5424980‑M1/9‑35 (MQ=255)
                          aaaaacccCAGACGCTGATGAAACGTCGGTTTTTa         >  1:902871‑M1/9‑35 (MQ=255)
                           aaaccccCCGACGCTGATGAAACGTCGGTTTTTAg        >  1:10934208‑M1/8‑35 (MQ=255)
                           aaaacccCCGACGCTGATGAAACGTCGGTTTTTAg        >  1:10625995‑M1/8‑35 (MQ=255)
                           aaaaTAACCGACGCTGATGAAACGTCGGgtttttg        >  1:18455566‑M1/1‑28 (MQ=255)
                           aaaaTAACCGACGCTGATGAAACGTCGGggttttt        >  1:14657661‑M1/1‑28 (MQ=255)
                           aaaaTAACCGACGCTGATGAAACGTCGGggttttt        >  1:16352585‑M1/1‑28 (MQ=255)
                           aaaaTAACCGACGCTGATGAAACGTCGGggttttt        >  1:8859657‑M1/1‑28 (MQ=255)
                            aaccccCCGACGCTGATGAAACGTCGGTTTTTAGt       >  1:9056801‑M1/7‑35 (MQ=255)
                            aaccccCCGACGCTGATGAAACGTCGGTTTTTAGt       >  1:20276429‑M1/7‑35 (MQ=255)
                            aaacccCCGACGCTGATGAAACGTCGGTTTTTAGt       >  1:19030614‑M1/7‑35 (MQ=255)
                            aaaTAACCGACGCTGATGAAACGTCGGggtttttt       >  1:15369435‑M1/1‑27 (MQ=255)
                            aaaTAACCGACGCTGATGAAACGTCGGggtttttt       >  1:3466032‑M1/1‑27 (MQ=255)
                            aaaTAACCGACGCTGATGAAACGTCGGggtttttg       >  1:11931193‑M1/1‑27 (MQ=255)
                            aaaTAACCGACGCTGATGAAACGTCGGggttttgt       >  1:2611915‑M1/1‑27 (MQ=255)
                            aaaTAACCGACGCTGATGAAACGTCGGggttttgt       >  1:5508404‑M1/1‑27 (MQ=255)
                            aaaTAACCGACGCTGATGAAACGTCGGGTTTTAGt       >  1:13244619/1‑35 (MQ=255)
                             aaTAACCGACGCTGATGAAACGTCGGggttttttt      >  1:9333497‑M1/1‑26 (MQ=255)
                             aaTAACCGACGCTGATGAAACGTCGGggttttgtc      >  1:19596341‑M1/1‑26 (MQ=255)
                              acccCCGACGCTGATGAAACGTCGGTTTTTAGTCa     >  1:1279604‑M1/5‑35 (MQ=255)
                              aTAACCGACGCTGATGAAACGTCGGggttttttta     >  1:17641764‑M1/1‑25 (MQ=255)
                               tAACCGACGCTGATGAAACGTCGGggtttttttat    >  1:3743737‑M1/1‑24 (MQ=255)
                                ccCCGACGCTGATGAAACGTCGGTTTTTAGTCAtt   >  1:17216064‑M1/3‑35 (MQ=255)
                                 aCCGACGCTGATGAAACGTCGGGGTTTTGTCAttt  >  1:9872623/1‑35 (MQ=25)
                                  |                                 
TTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTT  >  REL606/2017629‑2017696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.