New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 207313 =39 (0.380)6 (0.060) 3/44 NT 6.9% coding (1124/1149 nt) lpxB lipid‑A‑disaccharide synthase
?REL606 1513006 = 126 (1.340)coding (3736/3741 nt) narZ nitrate reductase 2 (NRZ), alpha subunit

ACAAATTCGATCATTGTGCTAACTCCAGAACGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/207348‑207313
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttTTTTCGCCTCCTGTACCTGATCGCGACCTTCATC  >  REL606/1513006‑1513039
                                                                      
ACAAATTCGATCATTGTGCTAACTCCAGAACGGCT                                     >  1:1511308/1‑35
ACAAATTCGATCATTGTGCTAACTCCAGAACGGCT                                     >  1:10985837/1‑35
ACAAATTCGATCATTGTGCTAACTCCAGAACGGCT                                     >  1:11121014/1‑35
ACAAATTCGATCATTGTGCTAACTCCAGAACGGCT                                     >  1:11228691/1‑35
ACAAATTCGATCATTGTGCTAACTCCAGAACGGCT                                     >  1:12721364/1‑35
 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT                                    >  1:19489853/1‑35
 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT                                    <  1:20066925/35‑1
 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT                                    >  1:2736980/1‑35
 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT                                    <  1:2791307/35‑1
 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT                                    <  1:13699857/35‑1
 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT                                    >  1:3282551/1‑35
 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT                                    <  1:12775780/35‑1
 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT                                    >  1:6331394/1‑35
 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT                                    >  1:7976743/1‑35
 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT                                    >  1:10408308/1‑35
 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT                                    <  1:10000716/35‑1
  AAATTCGATCATTGTGCTAACTCCAGAACGGCTTT                                   >  1:13525798/1‑35
  AAATTCGATCATTGTGCTAACTCCAGAACGGCTTT                                   >  1:5495060/1‑35
  AAATTCGATCATTGTGCTAACTCCAGAACGGCTTT                                   >  1:9035626/1‑35
   AATTCGATCATTGTGCTAACTCCAGAACGGCTTTT                                  >  1:19705773/1‑35
   AATTCGATCATTGTGCTAACTCCAGAACGGCTTTT                                  >  1:11131682/1‑35
    ATTCGATCATTGTGCTAACTCCAGAACGGCTTTTg                                 >  1:9332335/1‑34
    ATTCGATCATTGTGCTAACTCCAGAACGGCTTTTg                                 >  1:17642388/1‑34
    ATTCGATCATTGTGCTAACTCCAGAACGGCTTTTg                                 >  1:5892523/1‑34
    ATTCGATCATTGTGCTAACTCCAGAACGGCTTTTT                                 >  1:7728593/1‑35
     TTCGATCATTGTGCTAACTCCAGAACGGCTTTTgg                                >  1:4846680/1‑33
     TTCGATCATTGTGCTAACTCCAGAACGGCTTTTTc                                >  1:20510204/1‑34
      TCGATCATTGTGCTAACTCCAGAACGGCTTTTgtt                               >  1:8901435/1‑32
      TCGATCATTGTGCTAACTCCAGAACGGCTTTTgcc                               >  1:11993897/1‑32
      TCGATCATTGTGCTAACTCCAGAACGGCTTTTTgc                               >  1:5096569/1‑33
      TCGATCATTGTGCTAACTCCAGAACGGCTTTTTct                               >  1:14492731/1‑33
      TCGATCATTGTGCTAACTCCAGAACGGCTTTTTTC                               >  1:6461776/1‑35
      TCGATCATTGTGCTAACTCCAGAACGGCTTTTGTC                               >  1:10467552/1‑35
          TCATTGTGCTAACTCCAGAACGGCTTTTTCCGCCT                           >  1:8103527/1‑35
           CATTGTGCTAACTCCAGAACGGCTTTTTTCTCCTg                          >  1:9497200/1‑34
           CATTGTGCTAACTCCAGAACGGCTTTTTTCGCCcg                          >  1:18857585/1‑33
            ATTGTGCTAACTCCAGAACGGCTTTTTTCGCCTCC                         >  1:8913412/1‑35
             TTGTGCTAACTCCAGAACGGCTTTTTTCGCCTCCT                        >  1:4884831/1‑35
             TTGTGCTAACTCCAGAACGGCTTTTTTCGCCCCCT                        >  1:8057240/1‑35
                                  TTTTTTCGCCTCCTGTACCTGATCGCGACCTTCAT   >  1:14460962/1‑35
                                  TTTTTTCGCCTCCTGTACCTGATCGCGACCTTCAT   >  1:17136810/1‑35
                                  TTTTTTCGCCTCCTGTACCTGATCGCGACCTTCAT   <  1:10212491/35‑1
                                  TTTTTTCGCCTCCTGTACCTGATCGCGACCTTCAT   >  1:1771158/1‑35
                                   TTTTTCGCCTCCTGTACCTGATCGCGACCTTCATC  <  1:12949656/35‑1
                                   TTTTTCGCCTCCTGTACCTGATCGCGACCTTCATC  <  1:722411/35‑1
                                   TTTTTCGCCTCCTGTACCTGATCGCGACCTTCATC  <  1:2049945/35‑1
                                   TTTTTCGCCTCCTGTACCTGATCGCGACCTTCATC  <  1:19503175/35‑1
                                                                      
ACAAATTCGATCATTGTGCTAACTCCAGAACGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/207348‑207313
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttTTTTCGCCTCCTGTACCTGATCGCGACCTTCATC  >  REL606/1513006‑1513039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.