New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 581288 =99 (0.960)12 (0.150) 3/38 NT 17.1% coding (1672/3144 nt) cusA copper/silver efflux system, membrane component
?REL606 1956195 = 38 (0.470)coding (420/579 nt) flhC DNA‑binding transcriptional dual regulator with FlhD

Only 100 of 183 total aligned reads displayed.

GGTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAGATCAATGAAGGCGA  >  REL606/581254‑581322
                                  |                                  
tggattactgcaactttccagctgcaactgctgcg                                    <  1:3630984‑M1/1‑1 (MQ=255)
ggTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTg                                    >  1:17525579/1‑35 (MQ=255)
ggTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTg                                    <  1:17980925/35‑1 (MQ=255)
ggTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTg                                    <  1:1071831/35‑1 (MQ=255)
ggTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTg                                    >  1:4056959/1‑35 (MQ=255)
ggTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTg                                    <  1:14107447/35‑1 (MQ=255)
 ggattactgcaactttccagctgcaactgctgcgg                                   <  1:6134207‑M1/2‑1 (MQ=255)
 gTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTgg                                   <  1:2910443/35‑1 (MQ=255)
  tGCTGACGGTTCTCTGGCCGCTCAATAAAGTTGGc                                  <  1:3870825/35‑1 (MQ=255)
  gattactgcaactttccagctgcaactgctgcggc                                  <  1:11826965‑M1/3‑1 (MQ=255)
   attactgcaactttccagctgcaactgctgcggcg                                 <  1:6041142‑M1/4‑1 (MQ=255)
    ttactgcaactttccagctgcaactgctgcggcgg                                <  1:4660255‑M1/5‑1 (MQ=255)
    cTGACGGTTCTCTGGCCGCTCCATAAAGTTGGCgg                                >  1:19217731/1‑35 (MQ=255)
    cTGACGGTTCTCTGGCCGCTCAATAAAGTTGGCgg                                <  1:12535701/35‑1 (MQ=255)
     tactgcaactttccagctgcaactgctgcGGCggg                               <  1:3458871‑M1/6‑1 (MQ=255)
      gACGGTTCTCTGGCCGCTCAATAAAGTTGGCgggg                              >  1:19578894/1‑35 (MQ=255)
      actgcaactttccagctgcaactgctgcGGCgggg                              <  1:11704614‑M1/7‑1 (MQ=255)
       ctgcaactttccagctgcaactgctgcGgcgggca                             <  1:19759564‑M1/8‑3 (MQ=255)
       ctgcaactttccagctgcaactgctgcGGcggggc                             <  1:1283865‑M1/8‑2 (MQ=255)
       ctgcaactttccagctgcaactgctgcGGCGGGGa                             <  1:7749457‑M1/8‑1 (MQ=255)
       ctgcaactttccagctgcaactgctgcGGCGGGGa                             <  1:10801265‑M1/8‑1 (MQ=255)
       ctgcaactttccagctgcaactgctgcGGCGGGGa                             <  1:13559617‑M1/8‑1 (MQ=255)
       aCGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGa                             >  1:12106267/1‑35 (MQ=255)
       aCGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGa                             >  1:16497965/1‑35 (MQ=255)
        cGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGaa                            >  1:12659832/1‑35 (MQ=255)
         ggTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAAt                           <  1:13626765/35‑1 (MQ=255)
         ggTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAAt                           >  1:7050994/1‑35 (MQ=255)
         ggTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAAt                           <  1:5846299/35‑1 (MQ=255)
          gTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAAtt                          <  1:1406224/35‑1 (MQ=255)
          gTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAAtt                          <  1:2169799/35‑1 (MQ=255)
          caactttccagctgcaactgctgcGGCGgggattt                          <  1:16125289‑M1/11‑4 (MQ=255)
           ttCTCTGGCCGCTCAATAAAGTTGTCGGGGAAttt                         >  1:9914284/1‑35 (MQ=255)
           ttCTCTGGCCGCTCAATAAAGTTGGCGGGGAAttt                         >  1:18538905/1‑35 (MQ=255)
           ttCTCTGGCCGCTCAATAAAGTTGGCGGGGAAttt                         <  1:10867034/35‑1 (MQ=255)
           ttCTCTGGCCGCTCAATAAAGTTGGCGGGGAAttt                         >  1:16583248/1‑35 (MQ=255)
            tctcTGGCCGCTCAATAAAGTTGGCGGGGAAtttt                        >  1:3254181/1‑35 (MQ=255)
            tctcTGGCCGCTCAATAAAGTTGGCGGGGAAtttt                        >  1:12427541/1‑35 (MQ=255)
            tctcTGGCCGCTCAATAAAGTTGGCGGGGAAtttt                        <  1:14506909/35‑1 (MQ=255)
             ctttccagctgcaactgctgcGGCGGGGATttttt                       <  1:4444775‑M1/14‑1 (MQ=255)
             ctttccagctgcaactgctgcGGCGGGGAAttttt                       <  1:16950389‑M1/14‑1 (MQ=255)
             ctttccagctgcaactgctgcGGCGGGGAAttttt                       <  1:4189421‑M1/14‑1 (MQ=255)
             ctctGGCCGCTCAATAAAGTTGGCGGGGAAttttt                       <  1:16568944/35‑1 (MQ=255)
             ctctGGCCGCTCAATAAAGTTGGCGGGGAAttttt                       >  1:10549041/1‑35 (MQ=255)
             ctctGGCCGCTCAATAAAGTTGGCGGGGAAttttt                       <  1:3354774/35‑1 (MQ=255)
             ctctGGCCGCTCAATAAAGTTGGCGGGGAAttttt                       >  1:906891/1‑35 (MQ=255)
              tttccagctgcaactgctgcGGCGGGGAttttttt                      <  1:14808121‑M1/15‑2 (MQ=255)
              tctGGCCGCTCAATAAAGTTGGCGGGGAATTTTTa                      <  1:18630567/35‑1 (MQ=255)
               ctGGCCGCTCAATAAAGTTGGCGGGGAATTTTTAc                     >  1:1732259/1‑35 (MQ=255)
               ctGGCCGCTCAATAAAGTTGGCGGGGAATTTTTAc                     <  1:13380743/35‑1 (MQ=255)
                tccagctgcaactgctgcGGCGGGgaattttttta                    <  1:1682463‑M1/17‑4 (MQ=255)
                tGGCCGCTCAATAAAGTTGGCGGGGAATTTTTAcc                    >  1:13147171/1‑35 (MQ=255)
                tGGCCGCTCAATAAAGTTGGCGGGGAATTTTTAcc                    >  1:11331155/1‑35 (MQ=255)
                tGGCCGCTCAATAAAGTTGGCGGGGAATTTTTAcc                    <  1:6223803/35‑1 (MQ=255)
                tGGCCGCTCAATAAAGTTGGCGGGGAATTTTTAcc                    <  1:15931121/35‑1 (MQ=255)
                  gCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGc                  >  1:4956710/1‑35 (MQ=255)
                  gCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGc                  <  1:3832791/35‑1 (MQ=255)
                  gCCGCTCAATAAAGTTGGCGGGGAACTTTTAccag                  >  1:2818344/1‑33 (MQ=38)
                   ccGCTCAATAAAGTTGGCGGGGAATTTTTACCGCa                 <  1:12458118/35‑1 (MQ=255)
                   ccGCTCAATAAAGTTGGCGGGGAATTTTTACCGCa                 <  1:983943/35‑1 (MQ=255)
                    cGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAg                <  1:15607659/35‑1 (MQ=255)
                    cGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAg                <  1:9325628/35‑1 (MQ=255)
                     gCTCAATAAAGTTGGCGGGGAATTTTTACCGCAGa               >  1:7931679/1‑35 (MQ=255)
                      cTCAATAAAGTTGGCGGGGAATTTTTACCGCAGAt              >  1:10316850/1‑35 (MQ=255)
                       tCAATAAAGTTGGCGGGGAATTTTTACCGCAGATc             >  1:15609080/1‑35 (MQ=255)
                       tCAATAAAGTTGGCGGGGAATTTTTACCGCAGATc             >  1:17149998/1‑35 (MQ=255)
                        cAATAAAGTTGGCGGGGAATTTTTACCGCAGATCa            >  1:6549805/1‑35 (MQ=255)
                        cAATAAAGTTGGCGGGGAATTTTTACCGCAGATCa            >  1:6605533/1‑35 (MQ=255)
                         aaTAAAGTTGGCGGGTAATTTTTACCGCAGATCaa           >  1:20091769/1‑35 (MQ=255)
                         aaTAAAGTTGGCGGGGAATTTTTACCGCAGCTCaa           >  1:195849/1‑35 (MQ=255)
                         aaTAAAGTTGGCGGGGAATTTTTACCGCAGATCaa           >  1:6259518/1‑35 (MQ=255)
                         aaTAAAGTTGGCGGGGAATTTTTACCGCAGATCaa           >  1:14760457/1‑35 (MQ=255)
                         aaTAAAGTTGGCGGGGAATTTTTACCGCAGATCaa           <  1:752033/35‑1 (MQ=255)
                         aaTAAAGTTGGCGGGGAATTTTTACCGCAGATCaa           <  1:3406573/35‑1 (MQ=255)
                         aaTAAAGTTGGCGGGGAATTTTTACCGCAGATCaa           <  1:2586782/35‑1 (MQ=255)
                          aTAAAGTTGGCGGGGAATTTTTACCGCAGATCAAt          <  1:5416339/35‑1 (MQ=255)
                          aTAAAGTTGGCGGGGAATTTTTACCGCAGATCAAt          >  1:2455134/1‑35 (MQ=255)
                          aTAAAGTTGGCGGGGAATTTTTACCGCAGATCAAt          <  1:12359202/35‑1 (MQ=255)
                           tAAAGTTGGCGGGGAATTTTTACCGCAGATCAATg         >  1:6314106/1‑35 (MQ=255)
                           tAAAGTTGGCGGGGAATTTTTACCGCAGATCAATg         <  1:11071294/35‑1 (MQ=255)
                            aaaGTTGGCGGGGAATTTTTACCGCAGATCAATGa        <  1:6429217/35‑1 (MQ=255)
                            aaaGTTGGCGGGGAATTTTTACCGCAGATCAATGa        <  1:5490572/35‑1 (MQ=255)
                             aaGTTGGCGGGGAATTTTTACCGCAGATCAATGaa       <  1:8179544/35‑1 (MQ=255)
                             aaGTTGGCGGGGAATTTTTACCGCAGATCAATGaa       >  1:892497/1‑35 (MQ=255)
                             aaGTTGGCGGGGAATTTTTACCGCAGATCAATGaa       <  1:10060016/35‑1 (MQ=255)
                             aaGTTGGCGGGGAATTTTTACCGCAGATCAATGaa       <  1:15294147/35‑1 (MQ=255)
                             aaGTTGGCGGGGAATTTTTACCGCAGATCAATGaa       <  1:17185860/35‑1 (MQ=255)
                              aGTTGGCGGGGAATTTTTACCGCAGATCAATGAAg      <  1:18561292/35‑1 (MQ=255)
                              aGTTGGCGGGGAATTTTTACCGCAGATCAATGAAg      >  1:19843762/1‑35 (MQ=255)
                              aGTTGGCGGGGAATTTTTACCGCAGATCAATGAAg      >  1:3484532/1‑35 (MQ=255)
                              aGTTGGCGGGGAATTTTTACCGCAGATCAATGAAg      <  1:4069637/35‑1 (MQ=255)
                               gTTGGCGGGGGATTTTTACCGCAGATCAATTAAgg     >  1:18860307/1‑35 (MQ=37)
                                ttGGCGGGGAATTTTTACCGCAGATCAATGAAGGc    <  1:18309519/35‑1 (MQ=255)
                                ttGGCGGGGAATTTTTACCGCAGATCAATGAAGGc    <  1:15780719/35‑1 (MQ=255)
                                 tGGCGGGGAATTTTTACCGCAGATCAATGAAGGCg   <  1:17020286/35‑1 (MQ=255)
                                 tGGCGGGGAATTTTTACCGCAGATCAATGAAGGCg   <  1:16686997/35‑1 (MQ=255)
                                 tGGCGGGGAATTTTTACCGCAGATCAATGAAGGCg   <  1:8622456/35‑1 (MQ=255)
                                 tGGCGGGGAATTTTTACCGCAGATCAATGAAGGCg   <  1:8852807/35‑1 (MQ=255)
                                 tGGCGGGGAATTTTTACCGCAGATCAATGAAGGCg   >  1:13411436/1‑35 (MQ=255)
                                  ggCGGGGAATTTTTAACGCAGACCCATGAAGGCGa  >  1:6734292/1‑35 (MQ=25)
                                  GGCGGGGAATTTTTACCGCAGATCAATGAAGGCGa  >  1:1120311‑M1/1‑35 (MQ=255)
                                  |                                  
GGTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAGATCAATGAAGGCGA  >  REL606/581254‑581322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.