New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1673413 | 70 (0.680) | 24 (0.250) | 7/44 | NT | 28.7% | intergenic (‑147/+244) | uidA/uidR | beta‑D‑glucuronidase/DNA‑binding transcriptional repressor |
? | REL606 | = 4601575 | 55 (0.580) | intergenic (+52/‑70) | ytjA/yjjU | hypothetical protein/predicted esterase |
ATCAAAAAACCAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1673398‑1673413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaAAGCCAGTCCGCTGGACTGGCTTTGGATAAAATT < REL606/4601575‑4601542 tcCAAAAAACCAAAAAAAGCCAGTCCGCTGGACTG < 1:1639897/33‑1 tTCAAAAAAACAAAAAAAGCCAGTCCGCTGGACTG < 1:9482729/34‑1 cCAAAAAACCCAAAAAAGCCAGTCCGCTGGACTGG < 1:3710027/34‑1 ccAAAAACCAAAAAAAGCCAGTCCGCTGGACTGGC < 1:2665239/33‑1 CAAAAAACCAAAAAAAGCCAGTCCGCTGGACTGGC < 1:8469514/35‑1 CAAAAAAACAAAAAAAGCCAGTCCGCTGGACTGGC < 1:8243275/35‑1 CAAAAAAACAAAAAAAGCCAGTCCGCTGGACTGGC < 1:16267233/35‑1 cAAAAAACAAAAAAAGCCAGTCCGCTGGACTGGCT < 1:19003734/34‑1 AAAAAACCAAAAAAAGCCAGTCCGCTGGACTGGCT < 1:1633777/35‑1 AAAAAAACAAAAAAAGCCAGTCCGCTGGACTGGCT < 1:641020/35‑1 AAAAAAACAAAAAAAGCCAGTCCGCTGGACTGGCT < 1:2331310/35‑1 AAAAACCAAAAAAAGCCAGTCCGCTGGACTGGCTT < 1:15705529/35‑1 AAAAACCAAAAAAAGCCAGTCCGCTGGACTGGCTT < 1:11899091/35‑1 AAAAACCAAAAAAAGCCAGTCCGCTGGACTGGCTT < 1:12163945/35‑1 AAAAAACAAAAAAAGCCAGTCCGCTGGACTGGCTT < 1:19387833/35‑1 AAAACCAGAAAAAGCCAGTCCGCTGGACTGGCTTT < 1:4367675/35‑1 AAACCCAAAAAAGCCAGTCCGCTGGACTGGCTTTG < 1:5574627/35‑1 AAAACAAAAAAAGCCAGTCCGCTGGACTGGCTTTG < 1:328481/35‑1 AACCCAAAAAAGCCAGTCCGCTGGACTGGCTTTGG < 1:3016295/35‑1 AACCAAAAAAAGCCAGTCCGCTGGACTGGCTTTGG < 1:3458783/35‑1 AACCAAAAAAAGCCAGTCCGCTGGACTGGCTTTGG < 1:13785954/35‑1 AACCAAAAAAAGCCAGTCCGCTGGACTGGCTTTGG < 1:19629110/35‑1 ACCCAAAAAAGCCAGTCCGCTGGACTGGCTTTGGA < 1:11612747/35‑1 ACCAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGA < 1:9772349/35‑1 caAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGAT < 1:14225253/33‑1 caAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGAT < 1:3278654/33‑1 CCAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGAT < 1:17031991/35‑1 agAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATA < 1:435387/33‑1 aAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATA < 1:16257160/34‑1 CAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATA < 1:9332146/35‑1 CAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATA < 1:14609413/35‑1 AAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATAA < 1:11733675/35‑1 AAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATAA < 1:7135542/35‑1 AAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATAA < 1:6753900/35‑1 AAAAAAAGCCAGTACGCTGGACTGGCTTTGGATAA < 1:9991151/35‑1 AAAAAAGCCAGTCCGCTGGACTGGCTTTGGATAAA < 1:4602315/35‑1 AAAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAA < 1:17989862/35‑1 AAAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAA < 1:15850565/35‑1 AAAAGCCAGTCCGCTGGACTGGCTTTTGATAAAAT > 1:2805806/1‑35 AAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAAT > 1:6151916/1‑35 AAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAAT < 1:6435527/35‑1 AAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAAT < 1:7085985/35‑1 AAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAAT > 1:20220957/1‑35 AAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAAT < 1:16031065/35‑1 AAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAAN < 1:4435753/35‑1 AAAGCCAGTCCTCTGGACTGGCTTTGGATAAAATT > 1:11823070/1‑35 AAAGCCAGTCCGCTGGACTGGCTTTGGATAAAATT < 1:6434995/35‑1 ATCAAAAAACCAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1673398‑1673413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaAAGCCAGTCCGCTGGACTGGCTTTGGATAAAATT < REL606/4601575‑4601542 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |