New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 331092177 (0.750)8 (0.110) 3/34 NT 15.0% coding (824/1068 nt) degS serine endoprotease, periplasmic
?REL606 4603001 = 36 (0.490)coding (287/780 nt) yjjV predicted DNase

GGCGGACGCGAGATCGCACCACTGCACGCACAGAGCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3310881‑3310921
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtggGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC  >  REL606/4603001‑4603034
                                                                           
GGCGGACGCGAGATCGCACCACTGCACGCACAGAG                                          >  1:16331197/1‑35
GGCGGACGCGAGATCGCACCACTGCACGCACAGAG                                          >  1:3601438/1‑35
GGCGGACGCGAGATCGCACCACTGCACGCACAGAG                                          <  1:14457127/35‑1
GGCGGACGCGAGATCGCACCACTGCACGCACAGAG                                          <  1:13146290/35‑1
 GCGGACGCGAGATCGCACCACTGCACGCACAGAGC                                         <  1:3272508/35‑1
 GCGGACGCGAGATCGCACCACTGCACGCACAGAGC                                         >  1:7071602/1‑35
  CGGACGCGAGATCGCACCACTGCACGCACAGAGCG                                        <  1:17167153/35‑1
  CGGACGCGAGATCGCACCACTGCACGCACAGAGCG                                        <  1:10388013/35‑1
  CGGACGCGAGATCGCACCACTGCACGCACAGAGCG                                        >  1:9150725/1‑35
   GGACGCGAGATCGCACCACTGCACGCACAGAGCGG                                       >  1:17113750/1‑35
   GGACGCGAGATCGCACCACTGCACGCACAGAGCGG                                       <  1:10697244/35‑1
    GACGCGAGATCGCACCACTGCACGCACAGAGCGGT                                      <  1:583837/35‑1
    GACGCGAGATCGCACCACTGCACGCACAGAGCGGT                                      >  1:5296486/1‑35
    GACGCGAGATCGCACCACTGCACGCACAGAGCGGT                                      <  1:15445843/35‑1
     ACGCGAGATCGCACCACTGCACGCACAGAGCGGTG                                     <  1:11791237/35‑1
     ACGCGAGATCGCACCACTGCACGCACAGAGCGGTG                                     <  1:4712195/35‑1
     ACGCGAGATCGCACCACTGCACGCACAGAGCGGTG                                     >  1:3068867/1‑35
     ACGCGAGATCGCACCACTGCACGCACAGAGCGGTG                                     >  1:11696420/1‑35
     ACGCGAGATCGCACCACTGCACGCACAGAGCGGTG                                     <  1:8162906/35‑1
     ACGCGAGATCGCACCACTGCACGCACAGAGCGGTG                                     <  1:16005267/35‑1
      CGCGAGATCGCACCACTGCACGCACATAGCGGTGG                                    >  1:16518741/1‑35
      CGCGAGATCGCACCACTGCACGCACAGAGCGGTGG                                    <  1:18934222/35‑1
       gctAGATCGCACCACTGCACGCACAGAGCGGTGGG                                   >  1:3494836/4‑35
       GCGAGATCGCACCACTGCACGCACAGAGCGGTGGG                                   >  1:4388828/1‑35
       GCGAGATCGCACCACTGCACGCACAGAGCGGTGGG                                   >  1:4683564/1‑35
       GCGAGATCGCACCACTGCACGCACAGAGCGGTGGG                                   >  1:13177332/1‑35
        CGAGATCGCACCACTGCACGCACAGAGCGGTGGGG                                  >  1:3848001/1‑35
        CGAGATCGCACCACTGCACGCACAGAGCGGTGGGG                                  >  1:1393830/1‑35
        CGAGATCGCACCACTGCACGCACAGAGCGGTGGGG                                  >  1:20425053/1‑35
        CGAGATCGCACCACTGCACGCACAGAGCGGTGGGG                                  >  1:6531210/1‑35
         GAGATCGCACCACTGCACGCACAGAGCGGTGGGGt                                 >  1:318886/1‑34
         GAGATCGCACCACTGCACGCACAGAGCGGTGGGGt                                 >  1:2155901/1‑34
         GAGATCGCACCACTGCACGCACAGAGCGGTGGGGt                                 >  1:1079402/1‑34
         GAGATCGCACCACTGCACGCACAGAGCGGTGGGGG                                 >  1:14453017/1‑35
          AGATCGCACCACTGCACGCACAGAGCGGTGGGGtc                                >  1:8604518/1‑33
          AGATCGCACCACTGCACGCACAGAGCGGTGGGGta                                >  1:4172561/1‑33
           GATCGCACCACTGCACGCACAGAGCGGTGGGGtat                               >  1:8811627/1‑32
           GATCGCACCACTGCACGCACAGAGCGGTGGGGccc                               >  1:18632016/1‑32
           GATCGCACCACTGCACGCACAGAGCGGTGGGGTAG                               >  1:5295713/1‑35
           GATCGCACCACTGCACGCACAGAGCGGTGGGGTAG                               >  1:2018311/1‑35
           GATCGCACCACTGCACGCACAGAGCGGTGGGGTAG                               >  1:17451229/1‑35
            ATCGCACCACTGCACGCACAGAGCGGTGGGGTAGg                              >  1:1579700/1‑34
            ATCGCACCACTGCACGCACAGAGCGGTGGGGGAGg                              >  1:4472139/1‑34
            ATCGCACCACTGCACGCACAGAGCGGTGGGGGAGA                              >  1:14187439/1‑35
             TCGCACCACTGCACGCACATAGCGGTGGGGGAGAT                             >  1:16464277/1‑35
             TCGCACCACTGCACGCACAGAGCGGTGGGGGAGAT                             >  1:4171119/1‑35
              CGCACCACTGCACGCACAGAGCGGTGGGGTAGATC                            >  1:7283460/1‑35
              CGCACCACTGCACGCACAGAGCGGTGGGGGAGATC                            >  1:7308086/1‑35
              CGCACCACTGCACGCACAGAGCGGTGGGGGAGATC                            >  1:7715199/1‑35
               GCACCACTGCACGCACAGAGCGGTGGGGTAGATCa                           >  1:8755187/1‑34
               GCACCACTGCACGCACAGAGCGGTGGGGGAGATCa                           >  1:3459976/1‑34
                                  gccGTGGGGGAGATCGGTCTGGATCTCTTTGGCGA        <  1:1307703/32‑1
                                  GCGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGA        <  1:4416061/35‑1
                                  GCGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGA        <  1:7444084/35‑1
                                  GCGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGA        >  1:4960205/1‑35
                                  GCGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGA        <  1:20517083/35‑1
                                  GCGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGA        <  1:5546286/35‑1
                                   CGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGAC       >  1:5198463/1‑35
                                   CGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGAC       <  1:117376/35‑1
                                    GGTGGGGGAGATCGGTCTGGATCTCTTTGGCGACG      <  1:14099307/35‑1
                                    GGTGGGGGAGATCGGTCTGGATCTCTTTGGCGACG      <  1:13274254/35‑1
                                    GGTGGGGGAGATCGGTCTGGATCTCTTTGGCGACG      >  1:18109663/1‑35
                                    GGTGGGGGAGATCGGTCTGGATCTCTTTGGCGACG      >  1:6990160/1‑35
                                    GGTGGGGGAGATCGGTCTGGATCTCTTTGGCGACG      <  1:18024013/35‑1
                                     GTGTGGGAGATCGGTCTGGATCTCTTTGGCGACGA     >  1:18349812/1‑35
                                     GTGGGGGAGATCGGTCTGGATCTCTTTGGCGACGA     <  1:15287085/35‑1
                                     GTGGGGGAGATCGGTCTGGATCTCTTTGGCGACGA     >  1:19591123/1‑35
                                     GTGGGGGAGATCGGTCTGGATCTCTTTGGCGACGA     >  1:17706931/1‑35
                                      TGGGGGAGATCGGTCTGTATCTCTTTGGCGACGAT    >  1:8540497/1‑35
                                      TGGGGGAGATCGGTCTGGATCTCTTTGGCGACGAT    <  1:14669481/35‑1
                                      TGGGGGAGATCGGTCTGGATCTCTTTGGCGACGAT    <  1:10611201/35‑1
                                       GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC   >  1:7335806/1‑35
                                       GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC   >  1:915197/1‑35
                                       GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC   >  1:6848534/1‑35
                                       GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC   <  1:12725776/35‑1
                                       GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC   >  1:4464402/1‑35
                                       GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC   >  1:291380/1‑35
                                       GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC   >  1:16633455/1‑35
                                       GGGGGAGATCGGTATGGATCTCTTTGGCGACGATC   >  1:3518159/1‑35
                                        GGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC  <  1:4708660/35‑1
                                        GGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC  >  1:3707986/1‑35
                                        GGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC  >  1:14712836/1‑35
                                        GGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC  >  1:15139302/1‑35
                                        GGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC  >  1:3187240/1‑35
                                        GGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC  >  1:18051980/1‑35
                                                                           
GGCGGACGCGAGATCGCACCACTGCACGCACAGAGCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3310881‑3310921
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtggGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC  >  REL606/4603001‑4603034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.