New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 246042 | 115 (1.120) | 8 (0.080) | 5/44 | NT | 10.0% | coding (1833/2445 nt) | fadE | acyl‑CoA dehydrogenase |
? | REL606 | 503801 = | 39 (0.410) | coding (587/927 nt) | ybbS | DNA‑binding transcriptional activator of the allD operon |
GCAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/246007‑246042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG > REL606/503801‑503834 GCAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCC < 1:15492063/35‑1 CAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCC < 1:7596714/35‑1 CAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCC > 1:20384331/1‑35 CAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCC < 1:18621455/35‑1 GAGGCGAGGTAGAGCTGGCTTAAAATATCCCCCcg > 1:20565719/1‑33 TTAAAATATCCCCCGCCGGAAAGCGCCGCAACTGC < 1:4532657/35‑1 ttcAATATCCCCCGCCGGAAAGCGCCGCAACTGCG < 1:18715818/32‑1 TAAAATATCCCCCGCCGGAAAGCGCCGCAACTGCG < 1:9825066/35‑1 AAAATATCCCCCGCCGGAAAGCGCCGCAACTGCGC < 1:18617922/35‑1 AAATATTCCCCGCCGGAAAGCGCCGCAACTGCGCT < 1:1320790/35‑1 atTCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCT < 1:9077650/33‑1 TATGCCCCGCCGGAAAGCGCCGCAACTGCGCTTCT < 1:10516017/35‑1 TATCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCT < 1:5570266/35‑1 TATCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCT < 1:20147804/35‑1 tttCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTG < 1:17339291/32‑1 ATCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTG < 1:9326961/35‑1 ATCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTG < 1:12868490/35‑1 tgaCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGT < 1:12622066/32‑1 gCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGT < 1:19944543/34‑1 TCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGT < 1:9559301/35‑1 TCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGT < 1:14956776/35‑1 TCCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGT < 1:14981556/35‑1 TCCCCCGCCGGAAAGCGCAGCAACTGCGCTTCTGT < 1:13819715/35‑1 tCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTT < 1:13312923/34‑1 CCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTT < 1:17891805/35‑1 CCCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTT < 1:1106775/35‑1 gCCCGCCGGAAAGCGCAGCAACTGCGCTTCTGTTA < 1:14516009/34‑1 CCCCGCCGGNAAGCGCCGCAACTGCGCTTCTGTTA < 1:12319789/35‑1 CCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTA < 1:14662960/35‑1 CCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTA < 1:8623188/35‑1 CCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTA < 1:1609803/35‑1 CCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTA < 1:17622989/35‑1 CCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAG < 1:19334845/35‑1 CCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGC > 1:3547283/1‑35 CCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGC > 1:11645763/1‑35 CGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG > 1:12546879/1‑35 CGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG < 1:20087466/35‑1 CGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG < 1:799961/35‑1 CGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG < 1:12753859/35‑1 CGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG < 1:16392887/35‑1 GCAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/246007‑246042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCG > REL606/503801‑503834 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |