New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1255973 = | 72 (0.700) | 12 (0.140) | 4/40 | NT | 19.0% | coding (130/2868 nt) | ycgV | predicted adhesin |
? | REL606 | = 3223859 | 42 (0.490) | coding (537/696 nt) | yraI | predicted periplasmic pilin chaperone |
Only 100 of 147 total aligned reads displayed.
GTGCCATATTGACTTCCTGTATCAGCAGCTATCAGCA‑GGGGGGGAAATATAATTGCATTCAAACCAATA > REL606/1255939‑1256007 | gTGCCATATTGCCTTCCTGTATCAGCAGCTATcag < 1:865102/35‑1 (MQ=255) gTGCCATATTGACTTCCTGTATCAGCAGCTATcag > 1:13646613/1‑35 (MQ=255) cccaactgaatattacgtcgtatttgccggattgg < 1:17789208‑M1/1‑1 (MQ=255) cccaactgaatattacgtcgtatttgccggattgg > 1:13410612‑M1/35‑35 (MQ=255) cccaactgaatattacgtcgtatttgccggattgg > 1:1324206‑M1/35‑35 (MQ=255) tGCCATATTGACTTCCTGTATCAGCAGCTATccgc > 1:12510119/1‑35 (MQ=255) tGCCATATTGACTTCCTGTATCAGCAGCTATcagc > 1:19219462/1‑35 (MQ=255) tGCCATATGGACTTCCTGTATCAGCAGCTATcagc < 1:2161427/35‑1 (MQ=255) ccaactgaatattacgtcgtatttgccggattgGc < 1:16487033‑M1/2‑1 (MQ=255) gCCATATTGCCTTCCTGTATCAGCAGCTATcagcn < 1:18198877/35‑1 (MQ=255) gCCATATTGACTTCCTGTATCAGCAGCTATcagca < 1:10414337/35‑1 (MQ=255) cccATATTGCCTTCCTGTATCAGCAGCTATcagca < 1:5523499/34‑1 (MQ=255) cccATATTGCCTTCCTGTATCAGCAGCTATcagca < 1:12059573/34‑1 (MQ=255) ccATTTTGACTTCCTGTATCAGCAGCTATcagca‑g < 1:19410819/35‑1 (MQ=255) ccATATTGACTTCCTGTATCAGCAGCTATcagccg > 1:18518823/1‑33 (MQ=255) ccATATTGACTTCCTGTATCAGCAGCTATcagca‑g > 1:19855069/1‑35 (MQ=255) aactgaatattacgtcgtatttgccggattgGCA‑g > 1:14751169‑M1/32‑35 (MQ=255) aactgaatattacgtcgtatttgccggattgGCA‑g > 1:189368‑M1/32‑35 (MQ=255) ctgaatattacgtcgtatttgccggattgGCA‑ggg < 1:4100215‑M1/6‑1 (MQ=255) ctgaatattacgtcgtatttgccggattgGCA‑ggg < 1:9596495‑M1/6‑1 (MQ=255) atatTGACTTCCTGTATCAGCAGCTATCAGCA‑ggg > 1:20134134/1‑35 (MQ=255) atatTGACTTCCTGTATCAGCAGCTATCAGCA‑ggg > 1:19869604/1‑35 (MQ=255) gaatattacgtcgtatttgccggattgGCA‑ggggg < 1:3485255‑M1/8‑1 (MQ=255) gaatattacgtcgtatttgccggattgGCA‑ggggg < 1:4602869‑M1/8‑1 (MQ=255) gaatattacgtcgtatttgccggattgGCA‑ggggg < 1:7830448‑M1/8‑1 (MQ=255) gaatattacgtcgtatttgccggattgGCA‑ggggg < 1:17261712‑M1/8‑1 (MQ=255) atTGACTTCCTGTATCAGCAGCTATCAGCA‑ggggg < 1:12953377/35‑1 (MQ=255) ttGCCTTCCTGTATCAGCAGCTATCAGCA‑gggggg < 1:11108347/35‑1 (MQ=255) ttGCCTTCCTGTATAAGCAGCCATCAGCA‑gggggg < 1:3109674/35‑1 (MQ=25) ttGACTTCCTGTATCAGCAGCTATCAGCA‑gggggg > 1:19069767/1‑35 (MQ=255) aatattacgtcgtatttgccggattgGCA‑gggggg < 1:6567349‑M1/9‑1 (MQ=255) tGACTTCCTGTATCAGCAGCTATCAGCA‑ggggggg < 1:9277343/35‑1 (MQ=255) tGACTTCCTGTACCAGCAGCTATCAGCA‑ggggggg > 1:1808782/1‑35 (MQ=255) atattacgtcgtatttgccggattgGCA‑ggggggg < 1:15299865‑M1/10‑1 (MQ=255) atattacgtcgtatttgccggattgGCA‑ggggggg < 1:3945430‑M1/10‑1 (MQ=255) tattacgtcgtatttgccggattgGCA‑GGGGGGGa < 1:3219985‑M1/11‑1 (MQ=255) gccTTCCTGTATCAGCAGCTATCAGCA‑GGGGGGGa < 1:20304003/33‑1 (MQ=255) gACTTCCTGTATCAGCAGCTATCAGCA‑GGGGGGGa < 1:14261701/35‑1 (MQ=255) attacgtcgtatttgccggattgGCA‑GGGGGGGaa < 1:9875090‑M1/12‑1 (MQ=255) aCTTCCTGTATCAGCAGCTATCAGCA‑gggggggga > 1:6570739/1‑33 (MQ=255) aCTTCCTGTATCAGCAGCTATCAGCA‑GGGGGGGaa < 1:9527569/35‑1 (MQ=255) aCTTCCTGTATCAGCAGCTATCAGCA‑GGGGGGGaa > 1:10031795/1‑35 (MQ=255) ttacgtcgtatttgccggattgGCA‑GGGGGGGaaa < 1:6505031‑M1/13‑1 (MQ=255) cTTCCTGTATCAGCAGCTATCAGCA‑GGGGGGGgaa > 1:7918130/1‑35 (MQ=255) cTTCCTGTATCAGCAGCTATCAGCA‑GGGGGGGaaa < 1:5420008/35‑1 (MQ=255) ttCCTGTATCAGCAGCTATCAGCA‑GGGGGGGGAat > 1:7053684/1‑35 (MQ=255) ttCCTGTATCAGCAGCTATCAGCA‑GGGGGGGGAat > 1:19943127/1‑35 (MQ=255) ttCCTGTATCAGCAGCTATCAGCA‑GGGGGGGAAat < 1:1004883/35‑1 (MQ=255) ttCCTGTATCAGCAGCTATCAGCA‑GGGGGGGAAat < 1:5337419/35‑1 (MQ=255) ttCCTGTATCAGCAGCTATCAGCA‑GGGGGGGAAat > 1:11138150/1‑35 (MQ=255) ttCCTGTATCAGCAGCTATCAGCA‑GGGGGGGAAat > 1:9842560/1‑35 (MQ=255) tCCTGTATCAGCAGCTATCAGCA‑GGGGGGGgaaaa > 1:1182796/1‑33 (MQ=38) tCCTGTATCAGCAGCTATCAGCA‑GGGGGGGAAata < 1:2261735/35‑1 (MQ=255) acgtcgtatttgccggattgGCA‑GGGGGggaaaaa < 1:5174791‑M1/15‑3 (MQ=255) acgtcgtatttgccggattgGCA‑GGGGGggaaaaa < 1:16706786‑M1/15‑3 (MQ=255) acgtcgtatttgccggattgGCA‑GGGGGggaaaaa < 1:16270749‑M1/15‑3 (MQ=255) acgtcgtatttgccggattgGCA‑GGGGGggaaaaa < 1:19415412‑M1/15‑3 (MQ=255) acgtcgtatttgccggattgGCA‑GGGGGggaaaaa < 1:11405117‑M1/15‑3 (MQ=255) acgtcgtatttgccggattgGCA‑GGGGGggaaaaa < 1:2173898‑M1/15‑3 (MQ=255) ccTGTATCAGCAGCTATCAGCA‑GGGGGGGAAatat < 1:18746643/35‑1 (MQ=255) cTGTATCAGCAGCTATCAGCA‑GGGGGGGGAAtata > 1:11472482/1‑35 (MQ=255) cTGTATCAGCAGCTATCAGCA‑GGGGGGGGAAtata > 1:14467064/1‑35 (MQ=255) tGTATCAGCAGCTATCAGCA‑GGGGGGGAAATATaa < 1:6969611/35‑1 (MQ=255) tGTATCAGCAGCTATCAGCA‑GGGGGGGAAATATaa < 1:10223872/35‑1 (MQ=255) gTATCAGCAGCTATCAGCA‑GGGGGGGGAATATAAt > 1:14275553/1‑35 (MQ=255) tATCAGCAGCTATCAGCA‑GGGGGGGGAATATAAtt > 1:3621009/1‑35 (MQ=255) tATCAGCAGCTATCAGCA‑GGGGGGGGAATATAAtt > 1:10837810/1‑35 (MQ=255) tATCAGCAGCTATCAGCA‑GGGGGGGAAATATAAtt < 1:2959905/35‑1 (MQ=255) tATCAGCAGCTATCAGCA‑GGGGGGGAAATATAAtt < 1:4161995/35‑1 (MQ=255) aTCAGCAGCTATCAGCA‑GGGGGGGAAATATAATTg < 1:890605/35‑1 (MQ=255) aTCAGCAGCTATCAGCA‑GGGGGGGAAATATAATTg < 1:12757944/35‑1 (MQ=255) tCAGCAGCTATCAGCA‑GGGGGGGAAATATAATTGc < 1:1947686/35‑1 (MQ=255) tCAGCAGCTATCAGCA‑GGGGGGGAAATATAATTGc < 1:17103971/35‑1 (MQ=255) agcagcTATCAGCA‑GGGGGGGAAATATAATTGCAt < 1:2298955/35‑1 (MQ=255) gcagcTATCAGCA‑GGGGGGGAAATATAATTGCAtt < 1:15804797/35‑1 (MQ=255) gcagcTATCAGCA‑GGGGGGGAAATATAATTGCAtt > 1:4470541/1‑35 (MQ=255) cagcTATCAGCA‑GGGGGGGAAATATAATTGCATTc < 1:3297093/35‑1 (MQ=255) cagcTATCAGCA‑GGGGGGGAAATATAATTGCATTc < 1:10616223/35‑1 (MQ=255) agcTATCAGCA‑GGGGGGGAAATATAATTGCATTCa < 1:9950646/35‑1 (MQ=255) agcTATCAGCA‑GGGGGGGAAATATAATTGCATTCa < 1:7328938/35‑1 (MQ=255) gcTATCAGCA‑GGGGGGGAAATATAATTGCATTCaa < 1:17467798/35‑1 (MQ=255) cTATCAGCA‑GGGGGGGAAATATAATTGCATTCaaa < 1:10444685/35‑1 (MQ=255) cTATCAGCA‑GGGGGGGAAATATAATTGCATTCaaa < 1:18522178/35‑1 (MQ=255) cTATCAGCA‑GGGGGGGAAATATAATTGCATTCaaa > 1:6845032/1‑35 (MQ=255) tATCAGCA‑GGGGGGGAAATATAATTGCATTCAAAc < 1:17409975/35‑1 (MQ=255) aTCAGCA‑GGGGGGGAAATATAATTGCATTCAAAcc > 1:6116264/1‑35 (MQ=255) tCAGCAGGGGGGGGAAATATAATTGCATTCAAAcc > 1:13582326/1‑35 (MQ=38) tCAGCAGGGGGGGGAAATATAATTGCATTCAAAcc > 1:15111042/1‑35 (MQ=38) tCAGCA‑GGTGGTGAAATATAATTGCATTCAAACCa > 1:13005919/1‑35 (MQ=38) tCAGCA‑GGTGGGGAAATATAATTGCATTCAAACCa > 1:18015229/1‑35 (MQ=255) tCAGCA‑GGGGGGGAAATATAATTGCATTCAAACCa < 1:19503307/35‑1 (MQ=255) tCAGCA‑GGGGGGGAAATATAATTGCATTCAAACCa < 1:1921070/35‑1 (MQ=255) tCAGCA‑GGGGGGGAAATATAATTGCATTCAAACCa > 1:16791373/1‑35 (MQ=255) tCAGCA‑GGGGGGGAAATATAATTGCATTCAAACCa > 1:1671757/1‑35 (MQ=255) tCAGCA‑GGGGGGGAAATATAATTGCATTCAAACCa < 1:14065622/35‑1 (MQ=255) cagca‑gGGGGGTAAATATAATTGCATTCAAACCaa > 1:17300128/1‑35 (MQ=255) cagca‑gGGGGGGAAATATAATTGCATTCAAACCag > 1:621473/1‑34 (MQ=255) agca‑gGGGGGGAAATATAATTGCATTCAAACCAAt > 1:1459979/1‑35 (MQ=255) GCA‑GGGGGGGAAATATAATTGCATTCAAACCAATa > 1:14288450‑M1/1‑35 (MQ=255) GCA‑GGGGGGGAAATATAATTGCATTCAAACCAATa > 1:20347213‑M1/1‑35 (MQ=255) | GTGCCATATTGACTTCCTGTATCAGCAGCTATCAGCA‑GGGGGGGAAATATAATTGCATTCAAACCAATA > REL606/1255939‑1256007 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |