New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 506020 = | 104 (1.010) | 12 (0.120) | 4/48 | NT | 14.8% | intergenic (+28/‑62) | allR/gcl | DNA‑binding transcriptional repressor/glyoxylate carboligase |
? | REL606 | 758029 = | 34 (0.330) | coding (806/1266 nt) | tolA | cell envelope integrity inner membrane protein TolA |
Only 100 of 170 total aligned reads displayed.
TCCATAATGTCTGTCGCATCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTGGAAAAAT > REL606/505986‑506054 | TCCATAATGTCTGTCGCATCCCGCTCTGCGGAGCg > 1:7366013‑M1/1‑35 (MQ=255) TCCATAATGTCTGTCGCATCCCGCTCTGCGGAGCg > 1:6864845‑M1/1‑35 (MQ=255) cttttgccgctgccgcttttttgtctgcggcgggg < 1:13371087‑M1/2‑1 (MQ=255) ccATAATGTCTGTCGCATCCCGCTCTGCGGAGCgg < 1:635604/35‑1 (MQ=255) ccATAATGTCTGTCGCATCCCGCTCTGCGGAGCgg < 1:4241723/35‑1 (MQ=255) cATAATGTCTTTCGCATCCCGCTCTGCGGAGCggg > 1:15809325/1‑35 (MQ=255) cATAATGTCTGTCGCATCCCGCTCTGCGGAGCggg < 1:19919840/35‑1 (MQ=255) cATAATGTCTGTCGCATCCCGCTCTGCGGAGCggg < 1:14486984/35‑1 (MQ=255) tttgccgctgccgcttttttgtctgcggcggggtt < 1:6388349‑M1/4‑3 (MQ=255) tttgccgctgccgcttttttgtctgcggcggGGGt < 1:11491063‑M1/4‑1 (MQ=255) tttgccgctgccgcttttttgtctgcggcggGGGt < 1:11588932‑M1/4‑1 (MQ=255) aTAATGTCTGTCGCATCCCGCTCTGCGGAGCGGGt < 1:9667443/35‑1 (MQ=255) ttgccgctgccgcttttttgtctgcggcggGGGtt < 1:2313847‑M1/5‑1 (MQ=255) tAATGTCTGTCGCATCCCGCTCTGCGGAGCGGGtt < 1:15605597/35‑1 (MQ=255) tgccgctgccgcttttttgtctgcggcggGGGttt < 1:3844024‑M1/6‑1 (MQ=255) aaTGTCTGTCGCATCCCGCTCTGCGGAGCGGGttt < 1:19827821/35‑1 (MQ=255) aaTGTCTGTCGCATCCCGCTCTGCGGAGCGGGttt < 1:17303757/35‑1 (MQ=255) gccgctgccgcttttttgtctgcggcggGGTtttt < 1:13383065‑M1/7‑1 (MQ=255) aTGTCTGTCGCATCCCGCTCTGCGGAGCGGGtttt < 1:15908053/35‑1 (MQ=255) aTGTCTGTCGCATCCCGCTCTGCGGAGCGGGtttt < 1:18129522/35‑1 (MQ=255) gtctgtcGCATCCCGCTCTGCGGAGCGGGtttttt < 1:1876947/35‑1 (MQ=255) gtctgtcGCATCCCGCTCTGCGGAGCGGGtttttt < 1:12782768/35‑1 (MQ=255) cgctgccgcttttttgtctgcggcggGGTtttttt < 1:10900420‑M1/9‑1 (MQ=255) cgctgccgcttttttgtctgcggcggGGGtttttt < 1:1359483‑M1/9‑1 (MQ=255) cgctgccgcttttttgtctgcggcggGGGtttttt < 1:13892608‑M1/9‑1 (MQ=255) tctgtcGCATCCCGCTCTGCGGAGCGGGttttttt < 1:17688533/35‑1 (MQ=255) tctgtcGCATCCCGCTCTGCGGAGCGGGgtttttt > 1:17960462/1‑35 (MQ=255) tctgtcGCATCCCGCTCTGCGGAGCGGGgtttttt > 1:7038967/1‑35 (MQ=255) ctgtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTg > 1:11833425/1‑35 (MQ=255) ctgtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTg < 1:19734725/35‑1 (MQ=255) ctgccgcttttttgtctgcggcggGggttttttcc < 1:10548781‑M1/11‑3 (MQ=255) ctgccgcttttttgtctgcggcggGGgtttttttc < 1:8593529‑M1/11‑2 (MQ=255) tgtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTGa < 1:7195724/35‑1 (MQ=255) tgtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTGa < 1:17140588/35‑1 (MQ=255) tgtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTGa < 1:10655953/35‑1 (MQ=255) tgccgcttttttgtctgcggcggGggtttttttcc < 1:5963280‑M1/12‑3 (MQ=255) gtcGCATCCCTCTCTGCGTAGCGGGTTTTTTTGAc > 1:12010311/1‑35 (MQ=38) gtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTGAc < 1:3372512/35‑1 (MQ=255) gtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTGAc > 1:12177092/1‑35 (MQ=255) tcGCATCCCGCTCTGCGGAGCGGGTTTTTTTGACa > 1:5727122/1‑35 (MQ=255) nngNATCCCGCTCTGCGGAGCGGGTTTTTTTGACn < 1:16382361/33‑1 (MQ=255) cGCATCCCGCTCTGCGGAGCGGGTTTTTTTGACaa < 1:12316295/35‑1 (MQ=255) cGCATCCCGCTCTGCGGAGCGGGTTTTTTTGACaa < 1:4260981/35‑1 (MQ=255) gCATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaa < 1:18351427/35‑1 (MQ=255) gCATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaa > 1:10001112/1‑35 (MQ=255) gCATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaa < 1:11512460/35‑1 (MQ=255) gCATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaa < 1:13107440/35‑1 (MQ=255) cATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaaa < 1:10249246/35‑1 (MQ=255) cATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaaa > 1:6091502/1‑35 (MQ=255) cATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaaa < 1:2939664/35‑1 (MQ=255) cATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaaa < 1:17000832/35‑1 (MQ=255) aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt < 1:5296522/35‑1 (MQ=255) aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt < 1:11579366/35‑1 (MQ=255) aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt < 1:4433417/35‑1 (MQ=255) aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt < 1:2923006/35‑1 (MQ=255) aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt > 1:14765810/1‑35 (MQ=255) aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt > 1:9483847/1‑35 (MQ=255) aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt < 1:18580535/35‑1 (MQ=255) aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt > 1:19335983/1‑35 (MQ=255) tCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAtt > 1:12686898/1‑35 (MQ=255) cccGCTCTGCGGAGCGGGTTTTTTTGACAAAAttt < 1:10725174/35‑1 (MQ=255) cccGCTCTGCGGAGCGGGTTTTTTTGACAAAAttt > 1:19494349/1‑35 (MQ=255) ccGCTCTGCGGAGCGGGTTTTTTTGACAAAATTTg > 1:14886972/1‑35 (MQ=255) cGCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGa > 1:4131837/1‑35 (MQ=255) gCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGaa > 1:9028960/1‑35 (MQ=255) gCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGaa > 1:16348002/1‑35 (MQ=255) gCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGaa < 1:16087099/35‑1 (MQ=255) gCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGaa < 1:6205578/35‑1 (MQ=255) ctctGCGGAGCGGGTTTTTTTGACAAAATTTGaaa < 1:36764/35‑1 (MQ=255) ctctGCGGAGCGGGTTTTTTTGACAAAATTTGaaa < 1:3080247/35‑1 (MQ=255) ctctGCGGAGCGGGTTTTTTTGACAAAATTTGaaa < 1:14564148/35‑1 (MQ=255) tctGCGGAGCGGGTTTTTTTGACAAAATTTGAAAg > 1:6446821/1‑35 (MQ=255) tctGCGGAGCGGGTTTTTTTGACAAAATTTGAAAg > 1:11117057/1‑35 (MQ=255) tctGCGGAGCGGGTTTTTTTGACAAAATTTGAAAg > 1:4050970/1‑35 (MQ=255) tctGCGGAGCGGGTTTTTTTGACAAAATTTGAAAg < 1:14728418/35‑1 (MQ=255) tctGCGGAGCGGGTTTTTTTGACAAAATTTGAAAg < 1:16893621/35‑1 (MQ=255) ctGCGGAGCTGGTTTTTTTGACAAAATTTGAAAGt > 1:22024/1‑35 (MQ=255) tGCGGAGCGGGTTTTTTTGACAAAATTTGAAAGtt > 1:17453651/1‑35 (MQ=255) tGCGGAGCGGGTTTTTTTGACAAAATTTGAAAGtt < 1:10069422/35‑1 (MQ=255) gCGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTg < 1:8515220/35‑1 (MQ=255) gCGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTg > 1:18436599/1‑35 (MQ=255) gCGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTg < 1:11650257/35‑1 (MQ=255) gCGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTg < 1:2611127/35‑1 (MQ=255) cGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTgg > 1:5161854/1‑35 (MQ=255) cGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTgg > 1:4834149/1‑35 (MQ=255) cGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTgg < 1:1045284/35‑1 (MQ=255) ggAGCGGGTTTTTTTGACAAAATTTGAAAGTTGGa < 1:18738820/35‑1 (MQ=255) ggAGCGGGTTTTTTTGACAAAATTTGAAAGTTGGa > 1:20395459/1‑35 (MQ=255) aGCGGGTTTTTTTGACAAAATTTGAAAGTTGGaaa < 1:13858797/35‑1 (MQ=255) aGCGGGTTTTTTTGACAAAATTTGAAAGTTGGaaa > 1:199848/1‑35 (MQ=255) aGCGGGTTTTTTTGACAAAATTTGAAAGTTGGaaa > 1:1511511/1‑35 (MQ=255) gCGGGTTTTTTTGACAAAATTTGAAAGTTGGaaaa > 1:11262789/1‑35 (MQ=255) gCGGGTTTTTTTGACAAAATTTGAAAGTTGGaaaa < 1:9182045/35‑1 (MQ=255) cGGGTTTTTTTGACAAAATTTGAAAGTTGGaaaaa > 1:8420895/1‑35 (MQ=255) cGGGTTTTTTTGACAAAATTTGAAAGTTGGaaaaa > 1:19595396/1‑35 (MQ=255) cGGGTTTTTTTGACAAAATTTGAAAGTTGGaaaaa < 1:4574400/35‑1 (MQ=255) gggTTTTTTTGACAAAATTTGAAAGTTGGAAAAAt > 1:11212498/1‑35 (MQ=255) gggTTTTTTTGACAAAATTTGAAAGTTGGAAAAAt < 1:14427774/35‑1 (MQ=255) gggTTTTTTTGACAAAATTTGAAAGTTGGAAAAAt > 1:17394146/1‑35 (MQ=255) gggTTTTTTTGACAAAATTTGAAAGTTGGAAAAAt > 1:5371321/1‑35 (MQ=255) | TCCATAATGTCTGTCGCATCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTGGAAAAAT > REL606/505986‑506054 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |