New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 167341370 (0.680)24 (0.250) 7/44 NT 28.7% intergenic (‑147/+244) uidA/uidR beta‑D‑glucuronidase/DNA‑binding transcriptional repressor
?REL606 = 4601575 55 (0.580)intergenic (+52/‑70) ytjA/yjjU hypothetical protein/predicted esterase

ATCAAAAAACCAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1673398‑1673413
‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaAAGCCAGTCCGCTGGACTGGCTTTGGATAAAATT  <  REL606/4601575‑4601542
                                                  
tcCAAAAAACCAAAAAAAGCCAGTCCGCTGGACTG                 <  1:1639897/33‑1
tTCAAAAAAACAAAAAAAGCCAGTCCGCTGGACTG                 <  1:9482729/34‑1
 cCAAAAAACCCAAAAAAGCCAGTCCGCTGGACTGG                <  1:3710027/34‑1
  ccAAAAACCAAAAAAAGCCAGTCCGCTGGACTGGC               <  1:2665239/33‑1
  CAAAAAACCAAAAAAAGCCAGTCCGCTGGACTGGC               <  1:8469514/35‑1
  CAAAAAAACAAAAAAAGCCAGTCCGCTGGACTGGC               <  1:8243275/35‑1
  CAAAAAAACAAAAAAAGCCAGTCCGCTGGACTGGC               <  1:16267233/35‑1
   cAAAAAACAAAAAAAGCCAGTCCGCTGGACTGGCT              <  1:19003734/34‑1
   AAAAAACCAAAAAAAGCCAGTCCGCTGGACTGGCT              <  1:1633777/35‑1
   AAAAAAACAAAAAAAGCCAGTCCGCTGGACTGGCT              <  1:641020/35‑1
   AAAAAAACAAAAAAAGCCAGTCCGCTGGACTGGCT              <  1:2331310/35‑1
    AAAAACCAAAAAAAGCCAGTCCGCTGGACTGGCTT             <  1:15705529/35‑1
    AAAAACCAAAAAAAGCCAGTCCGCTGGACTGGCTT             <  1:11899091/35‑1
    AAAAACCAAAAAAAGCCAGTCCGCTGGACTGGCTT             <  1:12163945/35‑1
    AAAAAACAAAAAAAGCCAGTCCGCTGGACTGGCTT             <  1:19387833/35‑1
     AAAACCAGAAAAAGCCAGTCCGCTGGACTGGCTTT            <  1:4367675/35‑1
      AAACCCAAAAAAGCCAGTCCGCTGGACTGGCTTTG           <  1:5574627/35‑1
      AAAACAAAAAAAGCCAGTCCGCTGGACTGGCTTTG           <  1:328481/35‑1
       AACCCAAAAAAGCCAGTCCGCTGGACTGGCTTTGG          <  1:3016295/35‑1
       AACCAAAAAAAGCCAGTCCGCTGGACTGGCTTTGG          <  1:3458783/35‑1
       AACCAAAAAAAGCCAGTCCGCTGGACTGGCTTTGG          <  1:13785954/35‑1
       AACCAAAAAAAGCCAGTCCGCTGGACTGGCTTTGG          <  1:19629110/35‑1
        ACCCAAAAAAGCCAGTCCGCTGGACTGGCTTTGGA         <  1:11612747/35‑1
        ACCAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGA         <  1:9772349/35‑1
         caAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGAT        <  1:14225253/33‑1
         caAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGAT        <  1:3278654/33‑1
         CCAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGAT        <  1:17031991/35‑1
          agAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATA       <  1:435387/33‑1
          aAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATA       <  1:16257160/34‑1
          CAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATA       <  1:9332146/35‑1
          CAAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATA       <  1:14609413/35‑1
           AAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATAA      <  1:11733675/35‑1
           AAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATAA      <  1:7135542/35‑1
           AAAAAAAGCCAGTCCGCTGGACTGGCTTTGGATAA      <  1:6753900/35‑1
           AAAAAAAGCCAGTACGCTGGACTGGCTTTGGATAA      <  1:9991151/35‑1
            AAAAAAGCCAGTCCGCTGGACTGGCTTTGGATAAA     <  1:4602315/35‑1
             AAAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAA    <  1:17989862/35‑1
             AAAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAA    <  1:15850565/35‑1
              AAAAGCCAGTCCGCTGGACTGGCTTTTGATAAAAT   >  1:2805806/1‑35
              AAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAAT   >  1:6151916/1‑35
              AAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAAT   <  1:6435527/35‑1
              AAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAAT   <  1:7085985/35‑1
              AAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAAT   >  1:20220957/1‑35
              AAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAAT   <  1:16031065/35‑1
              AAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAAN   <  1:4435753/35‑1
               AAAGCCAGTCCTCTGGACTGGCTTTGGATAAAATT  >  1:11823070/1‑35
               AAAGCCAGTCCGCTGGACTGGCTTTGGATAAAATT  <  1:6434995/35‑1
                                                  
ATCAAAAAACCAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1673398‑1673413
‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaAAGCCAGTCCGCTGGACTGGCTTTGGATAAAATT  <  REL606/4601575‑4601542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.