Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL606378,3661.→G 1.3% 0.3 ‑1.7 ‑0.0159coding (77/912 nt)rdgCrecombination associated protein
Rejected: E-value exceeds prediction threshold.
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands.
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (65/92):  total (67/92)
Fisher's exact test strand distribution p-value = 1.76e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.99e-01

Only 100 of 179 total aligned reads displayed.

GCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTC  >  REL606/378332‑378400
                                   |                                  
gCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCt                                     >  1:14105129/1‑35 (MQ=255)
 cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTg                                   >  1:1855836/1‑35 (MQ=255)
 cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTg                                   <  1:182367/35‑1 (MQ=255)
 cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTg                                   <  1:19226084/35‑1 (MQ=255)
 cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTg                                   <  1:19884633/35‑1 (MQ=255)
 cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTg                                   <  1:20238703/35‑1 (MQ=255)
 cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTg                                   <  1:9265430/35‑1 (MQ=255)
 cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTg                                   >  1:11128369/1‑35 (MQ=255)
  tGCCGCATGGGGTAAATGCCATCGAGGCTAGCTgg                                  >  1:17103843/1‑34 (MQ=255)
  tGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGt                                  <  1:2129760/35‑1 (MQ=255)
   gCCGCATGGGGTAAATGCCATCGAGGCTAGCTGtt                                 <  1:19568457/35‑1 (MQ=255)
    ccGCATGGGGTAAATGCCATCGAGGCTAGCTGttt                                <  1:14426891/35‑1 (MQ=255)
     cGCATGGGGTAAATGCCATCGAGGCTAGCTGtttt                               <  1:16023852/35‑1 (MQ=255)
     cGCATGGGGTAAATGCCATCGAGGCTAGCTGtttt                               <  1:640704/35‑1 (MQ=255)
     cGCATGGGGTAAATGCCATCGAGGCTAGCTGtttt                               <  1:3914730/35‑1 (MQ=255)
     cGCATGGGGTAAATGCCATCGAGGCTAGCTGgttt                               >  1:17019572/1‑35 (MQ=255)
      gCATGGGGTAAATGCCATCGAGGCTAGCTGttttt                              <  1:1551219/35‑1 (MQ=255)
      gCATGGGGTAAATGCCATCGAGGCTAGCTGgtttt                              >  1:11711418/1‑35 (MQ=255)
      gCATGGGGTAAATGCCATCGAGGCTAGCTGgtttt                              >  1:17012768/1‑35 (MQ=255)
       cATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTc                             <  1:15952508/35‑1 (MQ=255)
       cATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTc                             >  1:14811818/1‑35 (MQ=255)
       cATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTc                             <  1:10786445/35‑1 (MQ=255)
        aTGGGGTAAATGCCATCGAGGCTAGCTGgtttttc                            >  1:2181252/1‑33 (MQ=37)
        aTGGGGTAAATGCCATCGAGGCTAGCTGgtttttc                            >  1:189676/1‑33 (MQ=37)
         tGGGGTAAATGCCATCGAGGATAGCTGTTTTTCCa                           <  1:13363152/35‑1 (MQ=255)
         tGGGGTAAAGGCCATCGAGGCTAGCTGTTTTTCCa                           <  1:8866526/35‑1 (MQ=255)
         gggggTAATGCCATCGAGGCTAGCTGTTTTTCCAt                          <  1:126025/34‑1 (MQ=38)
          ggggTAAATGCCATCGAGGCTAGCTGGTTTTTcct                           >  1:2399023/1‑34 (MQ=25)
          ggggTAAATGCCATCGAGGCTAGCTGGTTTTTcct                           >  1:8521332/1‑34 (MQ=25)
          ggggTAAATGCCATCGAGGCTAGCTGTTTTTCCAt                          <  1:19711986/35‑1 (MQ=255)
          ggggTAAATGCCATCGAGGCTAGCTGTTTTTCCAt                          >  1:6963073/1‑35 (MQ=255)
          ggggTAAATGCCATCGAGGCTAGCTGTTTTTCCAt                          <  1:7226527/35‑1 (MQ=255)
          ggggTAAATGCCATCGAGGCTAGCTGTTTTTCCAt                          >  1:12079684/1‑35 (MQ=255)
           gggTAAATGCCATCGAGGCTAGCTGGTTTTCCAtc                         >  1:11393974/1‑35 (MQ=255)
            ggTAAATGCCATCGAGGCTAGCTGTTTTTCCAtct                        <  1:15869751/35‑1 (MQ=255)
            ggTAAATGCCATCGAGGCTAGCTGTTTTTCCAtct                        <  1:2276405/35‑1 (MQ=255)
            ggTAAATGCCATCGAGGCTAGCTGTTTTTCCAtct                        <  1:3916952/35‑1 (MQ=255)
            ggTAAATGCCATCGAGGCTAGCTGTTTTTCCAtct                        <  1:8004419/35‑1 (MQ=255)
            ggTAAATGCCATCGAGGCTAGCTGGTTTTTCAtct                        >  1:5661979/1‑35 (MQ=37)
            ggTAAATGCCATCGAGGCTAGCTGGTTTTCCAtct                        >  1:15624774/1‑35 (MQ=255)
             gTAAATGCCATCGAGGCTAGCTGTTTTTTCCtctc                       >  1:9635284/1‑35 (MQ=37)
             gTAAATGCCATCGAGGCTAGCTGTTTTTCCAtctc                       <  1:7560250/35‑1 (MQ=255)
              tAAATGCCATCGAGGCTAGCTGGTTTTTCCTctct                      >  1:16845881/1‑35 (MQ=25)
               aaaTGCCATCGAGGCTAGCTGTTTTTCCATCtctt                     <  1:5266843/35‑1 (MQ=255)
               aaaTGCCATCGAGGCTAGCTGTTTTTCCATCtctt                     <  1:8027981/35‑1 (MQ=255)
                aaTGCCATCGAGGCTAGCTGTTTTTCCATCtcttc                    <  1:6795284/35‑1 (MQ=255)
                aaTGCCATCGAGGCTAGCTGTTTTTCCATCtcttc                    <  1:9854508/35‑1 (MQ=255)
                aaTGCCATCGAGGCTAGCTGGTTTTCCCTTtcttc                    >  1:20009420/1‑35 (MQ=25)
                 aTGCCATCGAGGCTAGCTGTTTTTCCATCtcttct                   <  1:3682272/35‑1 (MQ=255)
                 aTGCCATCGAGGCTAGCTGTTTTTCCATCtcttct                   <  1:17928642/35‑1 (MQ=255)
                 aTGCCATCGAGGCTAGCTGTTTTTCCATCtcttct                   <  1:6140740/35‑1 (MQ=255)
                 aTGCCATCGAGGCTAGCTGGTTTTCCATCtcttct                   >  1:11675666/1‑35 (MQ=255)
                  tGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTg                  <  1:3515067/35‑1 (MQ=255)
                  tGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTg                  <  1:4277325/35‑1 (MQ=255)
                  tGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTg                  <  1:12195471/35‑1 (MQ=255)
                  tGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTg                  <  1:13194895/35‑1 (MQ=255)
                   gCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGc                 <  1:16986387/35‑1 (MQ=255)
                   gCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGc                 <  1:3359073/35‑1 (MQ=255)
                   gCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGc                 <  1:12364402/35‑1 (MQ=255)
                   gCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGc                 <  1:12618656/35‑1 (MQ=255)
                    ccATCGATGCTAGCTGTTTTTCCATCTCTTCTGCa                >  1:15515737/1‑35 (MQ=255)
                    ccATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCa                <  1:2764232/35‑1 (MQ=255)
                     cATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCAc               <  1:569029/35‑1 (MQ=255)
                     cATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCAc               <  1:8436388/35‑1 (MQ=255)
                       tCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGc             <  1:4405416/35‑1 (MQ=255)
                       tCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGc             <  1:6996610/35‑1 (MQ=255)
                          aGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGc          <  1:13780913/35‑1 (MQ=255)
                          aGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGc          >  1:4446589/1‑35 (MQ=255)
                          aGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGc          >  1:13467119/1‑35 (MQ=255)
                           ggCTAGCTGTTTTTCCATCTCTTCTGCACGCAgtg         <  1:650527/35‑3 (MQ=255)
                           ggCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCg         <  1:16490459/35‑1 (MQ=255)
                           ggCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCg         <  1:7468238/35‑1 (MQ=255)
                            gCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGa        >  1:18586517/1‑35 (MQ=255)
                            gCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGa        <  1:18315138/35‑1 (MQ=255)
                            gCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGa        <  1:1605665/35‑1 (MQ=255)
                            gCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGa        <  1:4997963/35‑1 (MQ=255)
                            gCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGa        >  1:17057760/1‑35 (MQ=255)
                             cTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGaa       <  1:10209989/35‑1 (MQ=255)
                              tAGCTGTTTTTCCATCTCTTCTGCACGCAGCGaaa      >  1:17852035/1‑35 (MQ=255)
                              tAGCTGTTTTTCCATCTCTTCTGCACGCAGCGaaa      >  1:1355071/1‑35 (MQ=255)
                              tAGCTGTTTTTCCATCTCTTCTGCACGCAGCGaaa      >  1:9226368/1‑35 (MQ=255)
                              tAGCTGTTTTTCCATCTCTTCTGCACGCAGCGaaa      >  1:1094360/1‑35 (MQ=255)
                               aGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAAt     >  1:10110427/1‑35 (MQ=255)
                               aGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAAt     >  1:9808289/1‑35 (MQ=255)
                               aGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAAt     >  1:786690/1‑35 (MQ=255)
                               aGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAAt     <  1:12871836/35‑1 (MQ=255)
                               aGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAAt     >  1:494345/1‑35 (MQ=255)
                               aGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAAt     >  1:4081450/1‑35 (MQ=255)
                               aGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAAt     >  1:3275592/1‑35 (MQ=255)
                                gCTGTTTTTCCATCTCTTCTGCACGCAGCGAAAtc    >  1:3761557/1‑35 (MQ=255)
                                gCTGTTTTTCCATCTCTTCTGCACGCAGCGAAAtc    <  1:1046072/35‑1 (MQ=255)
                                gCTGTTTTTCCATCTCTTCTGCACGCAGCGAAAtc    >  1:14539157/1‑35 (MQ=255)
                                 cTGTTTTTCCATCTCTTCTGCACGCAGCTAAAtct   >  1:5746862/1‑35 (MQ=255)
                                 cTGTTTTTCCATCTCTTCTGCACGCAGCGAAAtct   >  1:7314419/1‑35 (MQ=255)
                                 cTGTTTTTCCATCTCTTCTGCACGCAGCGAAAtct   >  1:11819370/1‑35 (MQ=255)
                                 cTGTTTTTCCATCTCTTCTGCACGCAGCGAAAtct   >  1:11763977/1‑35 (MQ=255)
                                 cTGTTTTTCCATCTCTTCTGCACGCAGCGAAAtct   >  1:4040413/1‑35 (MQ=255)
                                 cTGTTTTTCCATCTCTTCTGCACGCAGCGAAAtct   <  1:1532989/35‑1 (MQ=255)
                                 cTGTTTTTCCATCTCTTCTGCACGCAGCGAAAtct   >  1:19900583/1‑35 (MQ=255)
                                  tGTTTTTCCATCTCTTCTGCACGCAGCGAAAtctc  >  1:13971969/1‑35 (MQ=255)
                                   |                                  
GCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTC  >  REL606/378332‑378400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.