New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 354520181 (0.790)9 (0.120) 3/36 NT 13.7% coding (847/1575 nt) nikA nickel transporter subunit
?REL606 = 4576439 53 (0.690)coding (2/381 nt) hpaF 5‑carboxymethyl‑2‑hydroxymuconate delta‑isomerase

ACCGTGATGCTGGCGCTCAATACCGCCAAAGCCCCCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3545162‑3545201
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccaTGCCGCACTTTATCGTGGAATGTACTGAAAATAT  <  REL606/4576439‑4576406
                                                                          
ACCGTGATGCTGGCGCTCAATACCGCCAAATCCCC                                         >  1:15053472/1‑35
ACCGTGATGCTGGCGCTCAATACCGCCAAAGCCCC                                         >  1:2863960/1‑35
ACCGTGATGCTGGCGCTCAATACCGCCAAAGCCCC                                         >  1:15947222/1‑35
 cctTGATGCTGGCGCTCAATACCGCCAAAGCCCCC                                        >  1:11472520/4‑35
 CCGTGATGCTGGCGCTCAATACCGCCAAAGCCCCC                                        >  1:5477196/1‑35
 CCGTGATGCTGGCGCTCAATACCGCCAAAGCCCCC                                        >  1:9683241/1‑35
 CCGTGATGCTGGCGCTCAATACCGCCAAAGCCCCC                                        >  1:10299052/1‑35
  CGTTATGCTGGCGCTCAATACCGCCAAAGCCCCCA                                       >  1:19091061/1‑35
  CGTGATGCTGGCGCTCAATACCGCCAAAGCCCCCA                                       >  1:15292447/1‑35
  CGTGATGCTGGCGCTCAATACCGCCAAAGCCCCCA                                       >  1:10343012/1‑35
   GTGATGCTGGCGCTCAATACCGCCAAAGCCCCCAC                                      >  1:13016357/1‑35
   GTGATGCTGGCGCTCAATACCGCCAAAGCCCCCAC                                      >  1:14171996/1‑35
   GTGATGCTGGCGCTCAATACCGCCAAAGCCCCCAC                                      >  1:14312759/1‑35
    TGATGCTGGCGCTCAATACCGCCAAAGCCCCCACC                                     >  1:699577/1‑35
     GATGCTTGCGCTCAATACCGCCAAAGCCCCCACCA                                    >  1:4937923/1‑35
     GATGCTGGCGCTCAATACCGCCAAAGCCCCCACCA                                    >  1:1135735/1‑35
                     cCCGCGAAAGCCCCCACCATGCCGCACTTTATCGT                    <  1:3593437/34‑1
                     cCCGCGAAAGCCCCCACCATGCCGCACTTTATCGT                    <  1:12010927/34‑1
                      CCGCAAAAGCCCCCACCATGCCGCACTTTATCGTG                   <  1:3656272/35‑1
                        tctAAAGCCCCCACCATGCCGCACTTTATCGTGGA                 <  1:3043947/32‑1
                         cgtAAGCCCCCACCATGCCGCACTTTATCGTGGAA                <  1:16331035/32‑1
                          gAAAGCCCCCACCATGCCGCACTTTATCGTGGAAT               <  1:9051795/34‑1
                          gAAACCCCCCACCATGCCGCACTTTATCGTGGAAT               <  1:3895577/34‑1
                           AAAGCCCCCACCATGCCGCACTTTATCGTGGAATG              <  1:3328647/35‑1
                            AAGCCCCCACCATGCCGCACTTTATCGTGGAATGT             <  1:8621291/35‑1
                             AGCCCCCACCATGCCGCACTTTATCGTGGAATGTA            <  1:10449628/35‑1
                             AGCCCCCACCATGCCGCACTTTATCGTGGAATGTA            <  1:4285340/35‑1
                              GCCCCCACCATGCCGCACTTTATCGTGGAATGTAC           <  1:14907072/35‑1
                               CCCCCACCATGCCGCACTTTATCGTGGAATGTACT          <  1:1987610/35‑1
                               CCCCCACCATGCCGCACTTTATCGTGGAATGTACT          <  1:11029827/35‑1
                                 CCCACCATGCCGCACTTTATCGTGGAATGTACTGA        <  1:14883858/35‑1
                                  CCACCATGCCGCACTTTATCGTGGAATGTACTGAA       >  1:20373429/1‑35
                                  CCACCATGCCGCACTTTATCGTGGAATGTACTGAA       >  1:4676236/1‑35
                                  CCACCATGCCGCACTTTATCGTGGAATGTACTGAA       <  1:13715684/35‑1
                                  CCACCATGCCGCACTTTATCGTGGAATGTACTGAA       >  1:12818447/1‑35
                                  CCACCATGCCGCACTTTATCGTGGAATGTACTGAA       <  1:9752776/35‑1
                                   CACCATGCCGCACTTTATCGTGGAATGTACTTAAA      >  1:1615572/1‑35
                                   CACCATGCCGCACTTTATCGTGGAATGTACTGAAA      <  1:3882798/35‑1
                                   CACCATGCCGCACTTTATCGTGGAATGTACTGAAA      >  1:3438335/1‑35
                                   CACCATGCCGCACTTTATCGTGGAATGTACTGAAA      <  1:9002565/35‑1
                                   CACCATGCCGCACTTTATCGTGGAATGTACTGAAA      >  1:9999940/1‑35
                                   CACCATGCCGCACTTTATCGTGGAATGTACTGAAA      >  1:10130808/1‑35
                                   CACCATGCCGCACTTTATCGTGGAATGTACTGAAA      <  1:11731382/35‑1
                                   CACCATGCCGCACTTTATCGTGGAATGTACTGAAA      <  1:13356027/35‑1
                                   CACCATGCCGCACTTTATCGTGGAATGTACTGAAA      <  1:2272536/35‑1
                                   CACCATGCCGCACTTTATCGTGGAATGTACTGAAA      <  1:1896025/35‑1
                                    ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA     <  1:11345073/35‑1
                                    ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA     >  1:9098347/1‑35
                                    ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA     >  1:2069380/1‑35
                                    ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA     <  1:7962095/35‑1
                                    ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA     >  1:19889601/1‑35
                                    ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA     >  1:1365787/1‑35
                                    ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA     >  1:15583880/1‑35
                                    ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA     >  1:17025022/1‑35
                                    ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA     <  1:18737406/35‑1
                                     CCATGCCGCACTTTATCGTGGAATGTACTGAAAAT    <  1:4991504/35‑1
                                     CCATGCCGCACTTTATCGTGGAATGTACTGAAAAT    >  1:1336618/1‑35
                                     CCATGCCGCACTTTATCGTGGAATGTACTGAAAAT    <  1:18732614/35‑1
                                     CCATGCCGCACTTTATCGTGGAATGTACTGAAAAT    >  1:10694644/1‑35
                                      CATGCCGCACTTTATCGTGGCATGTACTGAAAATA   >  1:14283988/1‑35
                                      CATGCCGCACTTTATCGTGGAATGTACTGAAAATA   <  1:15690075/35‑1
                                      CATGCCGCACTTTATCGTGGAATGTACTGAAAATA   >  1:11876456/1‑35
                                      CATGCCGCACTTTATCGTGGAATGTACTGAAAATA   >  1:3620269/1‑35
                                       ATGCCGCACTTTATCGTGGAATGTACTGAAAATAT  <  1:15967651/35‑1
                                       ATGCCGCACTTTATCGTGGAATGTACTGAAAATAT  <  1:11443485/35‑1
                                                                          
ACCGTGATGCTGGCGCTCAATACCGCCAAAGCCCCCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3545162‑3545201
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccaTGCCGCACTTTATCGTGGAATGTACTGAAAATAT  <  REL606/4576439‑4576406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.