New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 756509 | 64 (0.620) | 16 (0.210) | 4/36 | NT | 23.0% | coding (475/693 nt) | tolQ | membrane spanning protein in TolA‑TolQ‑TolR complex |
? | REL606 | 1539626 = | 59 (0.770) | coding (46/2400 nt) | dos | cAMP phosphodiesterase, heme‑regulated |
GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGGGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/756470‑756509 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcggGGAAAAAAATGCCATCGGCGGCATTTTCC > REL606/1539626‑1539654 GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG > 1:1061194/1‑35 GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG > 1:10824136/1‑35 GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG > 1:10897787/1‑35 GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG < 1:11877972/35‑1 GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG > 1:13331092/1‑35 GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG > 1:12627756/1‑35 GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG > 1:12837838/1‑35 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG < 1:15939517/35‑1 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG > 1:16017662/1‑35 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG > 1:14545737/1‑35 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG < 1:5346197/35‑1 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG > 1:6716168/1‑35 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG < 1:7913728/35‑1 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG < 1:1978047/35‑1 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG < 1:19461745/35‑1 CTGGGGGATCATGCACGCCTTTATCGCCCTCGGGG > 1:13508519/1‑35 CTGGGGGATCATGCACGCCTTTATCGCCCTCGGGG > 1:14015466/1‑35 CTGGGGGATCATGCACGCCTTTATCGCCCTCGGGG > 1:5323725/1‑35 CTGGGGGATCATGCACGCCTTTATCGCCCTCGGGG < 1:18678751/35‑1 TGGGGGATCATGCACGCCTTTATCGCCCTCGTGGC > 1:9165441/1‑35 TGGGGGATCATGCACGCCTTTATCGCCCTCGGGGC < 1:2602558/35‑1 TGGGGGATCATGCACGCCTTTATCGCCCTCGGGGC < 1:5171291/35‑1 TGGGGGATCATGCACGCCTTTATCGCCCTCGGGGC > 1:14603858/1‑35 nGGGGATCATGCACGCCTTTATCGCCCTCGGGGCG > 1:10802018/2‑35 GGGGGATCATGCACGCCTTTATCGCCCTCGGGGCG < 1:3893147/35‑1 GGGGGATCATGCACGCCTTTATCGCCCTCGGGGCG > 1:18093670/1‑35 GGGGATCATGCACGCCTTTATCGCCCTCGTGGCGG > 1:8572960/1‑35 GGGGATCATGCACGCCTTTATCGCCCTCGGGGCGG < 1:20413601/35‑1 GGGGATCATGCACGCCTTTATCGCCCTCGGGGCGG < 1:17935926/35‑1 GGGGATCATGCACGCCTTTATCGCCCTCGGGGCGG > 1:10197429/1‑35 GGGGATCATGCACGCCTTTATCGCCCTCGGGGCGG < 1:14211036/35‑1 GGGATCATGCACGCCTTTATCGCCCTCGGGGCGGG > 1:18112307/1‑35 GGGATCATGCACGCCTTTATCGCCCTCGGGGCGGG > 1:4816494/1‑35 GGGATCATGCACGCCTTTATCGCCCTCGGGGCGGG > 1:11980529/1‑35 GGGATCATGCACGCCTTTATCGCCCTCGGGGCGGG > 1:2168112/1‑35 GGATCATGCACGCCTTTATCGCCCTCGTGGCGGGG > 1:20244372/1‑35 GGATCATGCACGCCTTTATCGCCCTCGGGGCGGGG > 1:13708483/1‑35 GGATCATGCACGCCTTTATCGCCCTCGGGGCGGGG > 1:11223072/1‑35 GATCATGCACGCCTTTATCGCCCTCGGGGCGGGGA > 1:19945817/1‑35 ATCATGCACGCCTTTATCGCCCTCGGGGCGGGGAA > 1:15565978/1‑35 TCATGCACGCCTTTATCGCCCTCGGGGCGGGAAAg > 1:748425/1‑34 CATGCACGCCTTTATCTCCCTCGGGGCGGGGAAAA > 1:4059524/1‑35 CATGCACGCCTTTATCGCCCTCGGGGCGGGGAAAc > 1:20476655/1‑34 CATGCACGCCTTTATCGCCCTCGGGGCGGGGAAAA > 1:15565613/1‑35 ATGCACGCCTTTATCGCCCTCGGGGCGGGGAAAca > 1:8902588/1‑33 ATGCACGCCTTTATCGCCCTCGGGGCGGGGAAAAA > 1:8496589/1‑35 ATGCACGCCTTTATCGCCCTCGGGGCGGGGAAAAA > 1:16701578/1‑35 TGCACGCCTTTATCGCCCTCGGGGCGGGGGAAAAA > 1:3153834/1‑35 TGCACGCCTTTATCGCCCTCGGGGCGGGGAAAAAA > 1:6047672/1‑35 TGCACGCCTTTATCGCCCTCGGGGCGGGGAAAAAA > 1:9892283/1‑35 GCACGCCTTTATCGCCCTCGGGGCGGGGAAACAAA > 1:5288674/1‑35 GCACGCCTTTATCGCCCTCGGGGCGGGGAAAAAAA > 1:2703605/1‑35 CACGCCTTTATCGCCCTCGGGGCGGGGAAAAAAAa > 1:6467856/1‑34 CACGCCTTTATCGCCCTCGGGGCGGGGAAAAAAAa > 1:15051438/1‑34 CACGCCTTTATCGCCCTCGGGGCGGGAAAAAAAAc > 1:16779729/1‑34 ACGCCTTTATCGCCCTCGGGGCGGGGAAAAAAAca > 1:12542969/1‑33 ACGCCTTTATCGCCCTCGGGGCGGGGAAAAAAAca > 1:2710176/1‑33 ACGCCTTTATCGCCCTCGGGGCGGGGAAAAAAAaa > 1:16835855/1‑33 CGCCTTTATCGCCCTCGGGGCGGGGAAAAAAAcaa > 1:19771969/1‑32 GGGCGGGGAAAAAAATGCCATAGGCGGCATTTTCC < 1:4431046/35‑1 GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGGGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/756470‑756509 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcggGGAAAAAAATGCCATCGGCGGCATTTTCC > REL606/1539626‑1539654 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |