New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1036071104 (1.010)18 (0.180) 6/46 NT 17.6% intergenic (+43/+33) ycbG/ompA hypothetical protein/outer membrane protein A (3a;II*;G;d)
?REL606 = 2316746 69 (0.700)coding (216/891 nt) yfbH hypothetical protein

Only 100 of 224 total aligned reads displayed.

AGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTT  >  REL606/1036037‑1036105
                                  |                                  
cgaggttgccacaatgcggctaaAAAAAAAAaccc                                    <  1:13993658‑M1/12‑1 (MQ=255)
aGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC                                    <  1:16973270‑M1/35‑1 (MQ=255)
aGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC                                    <  1:19956978‑M1/35‑1 (MQ=255)
aGTAAGTTCAATTTACTAAAGGCAAAAAAAACCCC                                    <  1:20563512‑M1/35‑1 (MQ=255)
  aggttgccacaatgcggctaaAAAAAAATCCCCgc                                  <  1:7984060‑M1/14‑1 (MQ=255)
   ggttgccacaatgcggctaaAAAAAAAACCCcgcg                                 <  1:8441329‑M1/15‑2 (MQ=255)
   cAGTTCAATTTACTAAAGGCAAAAAAAACCCCgca                                 >  1:14209868/1‑35 (MQ=255)
   aaGTTCAATTTACTAAAGGCAAAAAAAACCCCgca                                 <  1:12478444/34‑1 (MQ=255)
    aGTTCAATTTACTAAAGGCAAAAAAAACCCCgcag                                >  1:11379077/1‑35 (MQ=255)
    aGTTCAATTTACTAAAGGCAAAAAAAACCCCgcag                                >  1:16639227/1‑35 (MQ=255)
    aGTTCAATTTACTAAAGGCAAAAAAAACCCCgcag                                >  1:16873241/1‑35 (MQ=255)
     ttgccacaatgcggctaaAAAAAAAACcccgcggg                               <  1:13519580‑M1/17‑4 (MQ=255)
     ttgccacaatgcggctaaAAAAAAAACcccgcggc                               <  1:9598511‑M1/17‑4 (MQ=255)
     ttgccacaatgcggctaaAAAAAAAACcccgccgg                               <  1:5371146‑M1/17‑4 (MQ=255)
     gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc                               >  1:16418169/1‑35 (MQ=255)
     gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc                               >  1:5097525/1‑35 (MQ=255)
     gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc                               <  1:3761958/35‑1 (MQ=255)
      ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca                              <  1:12200025/35‑1 (MQ=255)
      ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca                              <  1:7883378/35‑1 (MQ=255)
       tCAATTTACTAGAGGCAAAAAAAACCCCGcagcag                             >  1:6259066/1‑35 (MQ=255)
       tCAATTTACTAAAGGCAAAAAAAACCCCGcagcag                             >  1:13855601/1‑35 (MQ=255)
       tCAATTTACTAAAGGCAAAAAAAACCCCGcagcag                             >  1:4403629/1‑35 (MQ=255)
        cAATTTCCAAAAGGAAAAAAAACCCCCGCagcagc                            <  1:18657580/35‑1 (MQ=19)
        cAATTTACTAAAGGCAAAAAAAACCCCGCagcagc                            <  1:15224963/35‑1 (MQ=255)
         aaTTTACTAAAGGCAAAAAAAACACCGCAGCAGCg                           <  1:803175/35‑1 (MQ=255)
          aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCgg                          >  1:6104314/1‑35 (MQ=255)
          aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCgg                          >  1:5154779/1‑35 (MQ=255)
          aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCgg                          >  1:2755253/1‑35 (MQ=255)
          aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCgg                          >  1:3910496/1‑35 (MQ=255)
           tttACTAAAGGCAAAAAAAACCCCGCAGCAGCggg                         >  1:20420935/1‑35 (MQ=255)
           tttACTAAAGGCAAAAAAAACCCCGCAGCAGCggg                         <  1:1309313/35‑1 (MQ=255)
           tttACTAAAGGCAAAAAAAACCCCGCAGCAGCggg                         >  1:4749420/1‑35 (MQ=255)
             tACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGt                       >  1:14398195/1‑35 (MQ=255)
             tACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGt                       >  1:18383979/1‑35 (MQ=255)
             tACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGt                       >  1:11089236/1‑35 (MQ=255)
              aCTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGtt                      <  1:15888722/35‑1 (MQ=255)
               cTAAAGGCAAAAAAAACCCCGCAGCAGCGTGGgtt                     >  1:9784866/1‑35 (MQ=37)
               cTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGttt                     <  1:8295419/35‑1 (MQ=255)
               cTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGttt                     >  1:19113832/1‑35 (MQ=255)
                tAAAGGCAAAAAAATCCCCGCAGCAGCGGGGtttt                    <  1:20038400/35‑1 (MQ=255)
                tAAAGGCAAAAAAAACCCCGCAGCAGCGGGGtttt                    >  1:10047213/1‑35 (MQ=255)
                tAAAGGCAAAAAAAACCCCGAAGCAGCGGGGtttt                    <  1:13300148/35‑1 (MQ=255)
                 aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt                   >  1:14576198/1‑35 (MQ=255)
                 aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt                   <  1:6719121/35‑1 (MQ=255)
                  aaGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTc                  >  1:13913022/1‑35 (MQ=255)
                  aaGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTc                  <  1:2377649/35‑1 (MQ=255)
                   ccgcaAAAAAAACCCCccagccataaagcgatgcc                 <  1:10323102‑M1/33‑20 (MQ=255)
                   aGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCt                 <  1:3333535/35‑1 (MQ=255)
                    ggCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTa                >  1:6129370/1‑35 (MQ=255)
                     gCAAAAAAAACCCCagccgcgcggcgcaggtgaag               <  1:8829321‑M1/35‑22 (MQ=255)
                     acaAAAAAAACCCCccagccataaagcgatgccgc               <  1:10539573‑M1/34‑22 (MQ=255)
                      cAAAAAAAACCCCagccgcgcggcgcaggtgaagt              <  1:8264588‑M1/35‑23 (MQ=255)
                      cAAAAAAAACCCCagccgcgcggcgcaggtgaagt              <  1:18229389‑M1/35‑23 (MQ=255)
                      cAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTAcc              >  1:10318546/1‑35 (MQ=255)
                      cAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTAcc              >  1:4681299/1‑35 (MQ=255)
                       aaaaaaaaCCCCagccgcgcggcgcaggtgaagtg             <  1:8983058‑M1/35‑24 (MQ=255)
                       aaaaaaaaCCCCagccgcgcggcgcaggtgaagtg             <  1:4902896‑M1/35‑24 (MQ=255)
                       aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa             <  1:16044588/35‑1 (MQ=255)
                       aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa             >  1:18314026/1‑35 (MQ=255)
                       aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa             >  1:3040645/1‑35 (MQ=255)
                       aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa             >  1:9689606/1‑35 (MQ=255)
                        aaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAg            >  1:9332347/1‑35 (MQ=255)
                        aaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAg            <  1:16842969/35‑1 (MQ=255)
                         aaaaacCCCCagccgcgcggcgcaggtgaagtgac           <  1:6483821‑M1/35‑26 (MQ=255)
                         aaaaaaTCCCccagccataaagcgatgccgcgttt           <  1:5927032‑M1/35‑26 (MQ=255)
                         aaaaaaCCCCccagccataaagcgatgccgcgttt           <  1:3426826‑M1/35‑26 (MQ=255)
                         aaaaaaCCCCccagccataaagcgatgccgcgttt           <  1:13124348‑M1/35‑26 (MQ=255)
                          aaaaaCCCCccagccataaagcgatgccgcgtttg          <  1:7713578‑M1/35‑27 (MQ=255)
                          aaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGAc          >  1:19517578/1‑35 (MQ=255)
                          aaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGAc          >  1:13623803/1‑35 (MQ=255)
                          aaaaaCCCCGCAGCAGCGGGGTTTATCTACCAGAc          >  1:1254785/1‑35 (MQ=255)
                           aaaaCCCCccagccataaagcgatgccgcgtttga         <  1:3697308‑M1/35‑28 (MQ=255)
                           aaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACg         <  1:20381588/35‑1 (MQ=255)
                           aaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACg         <  1:20482619/35‑1 (MQ=255)
                            aaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACga        <  1:221169/35‑1 (MQ=255)
                             ccccccagccgcgcggcgcaggtgaagtgacgatt       <  1:8599492‑M1/33‑30 (MQ=255)
                             actcccccagccataaagcgatgccgcgtttgagc       <  1:18782504‑M1/32‑30 (MQ=255)
                             aatcccccagccataaagcgatgccgcgtttgagc       <  1:10745308‑M1/32‑30 (MQ=255)
                             aaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgag       >  1:14958006/1‑35 (MQ=255)
                             aaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgag       >  1:15450368/1‑35 (MQ=255)
                             aaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgag       >  1:693185/1‑35 (MQ=255)
                              cccccagccgcgcggcgcaggtgaagtgacgatta      <  1:3616404‑M1/34‑31 (MQ=255)
                              cccccGCAGCAGCGGGGTTTTTCTACCAGACgaga      <  1:7440704/34‑1 (MQ=255)
                              aCCCCccagccataaagcgatgccgcgtttgagcg      <  1:14502340‑M1/35‑31 (MQ=255)
                              aCCCCGCAGCAGCGGGGTTTTTCTACCAGACgaga      >  1:4349079/1‑35 (MQ=255)
                               ccccccagccataaagcgatgccgcgtttgagcgc     <  1:3436941‑M1/35‑32 (MQ=255)
                               ccccagccgcgcggcgcaggtgaagtgacgattat     <  1:11496360‑M1/35‑32 (MQ=255)
                               ccccGCAGCAGCGGGGTTTTTCTACCAGACGAGaa     <  1:17054161/35‑1 (MQ=255)
                               ccccGCAGCAGCGGGGTTTTTCTACCAGACGAGaa     <  1:17417374/35‑1 (MQ=255)
                                cccccagccataaagcgatgccgcgtttgagcgca    <  1:9742113‑M1/35‑33 (MQ=255)
                                cccccagccataaagcgatgccgcgtttgagcgca    <  1:16483554‑M1/35‑33 (MQ=255)
                                cccccagccataaagcgatgccgcgtttgagcgca    <  1:4147445‑M1/35‑33 (MQ=255)
                                 ccccagccataaagcgatgccgcgtttgagcgcag   <  1:12959373‑M1/35‑34 (MQ=255)
                                 ccccagccataaagcgatgccgcgtttgagcgcag   <  1:1092614‑M1/35‑34 (MQ=255)
                                 ccagccgcgcggcgcaggtgaagtgacgattatcg   <  1:16706219‑M1/35‑34 (MQ=255)
                                  cccagccataaagcgatgccgcgtttgagcgcagc  <  1:9172959‑M1/35‑35 (MQ=255)
                                  cccagccataaagcgatgccgcgtttgagcgcagc  <  1:13701810‑M1/35‑35 (MQ=255)
                                  cccagccataaagcgatgccgcgtttgagcgcagc  <  1:1445528‑M1/35‑35 (MQ=255)
                                  cGCAGCAGCGGGGTTTTTCTACCAGACGAGAACtt  <  1:19629538/35‑1 (MQ=255)
                                  cGCAGCAGCGGGGTTTTTCTACCAGACGAGAACtt  <  1:17660567/35‑1 (MQ=255)
                                  |                                  
AGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTT  >  REL606/1036037‑1036105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.