New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3517490 | 69 (0.670) | 13 (0.130) | 8/48 | NT | 14.7% | coding (10/1743 nt) | ggt | gamma‑glutamyltranspeptidase periplasmic precursor |
? | REL606 | = 4266659 | 82 (0.800) | intergenic (‑355/‑38) | acs/nrfA | acetyl‑coenzyme A synthetase/nitrite reductase, formate‑dependent, cytochrome |
Only 100 of 143 total aligned reads displayed.
AGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCC > REL606/4266625‑4266693 | aGGTGCGGTTACTGTCGTGAAAAACAATAAAAAcc < 1:11460054/35‑1 (MQ=255) ggTGCGGTTACTGTCGTGAAAAACAATAAAAACCg < 1:15023501/35‑1 (MQ=255) ggTGCGGTTACTGTCGTGAAAAACAATAAAAACCg < 1:15776274/35‑1 (MQ=255) gTGCGTTTCCTGTCGTGAAAAACAATAAAAACCGc < 1:4756042/35‑1 (MQ=38) gTGCGGTTACTGTCGTGAAAAACAATAAAAACCGc < 1:8234692/35‑1 (MQ=255) tGCGGTTACTGTCGTGAAAAACAATAAAAACCGcc > 1:18974187/1‑35 (MQ=255) tGCGGTTACTGTCGTGAAAAACAATAAAAACCGcc > 1:11548445/1‑35 (MQ=255) cGGTTACTGTCGTGAAAAACAATAAAAACCGCCAt > 1:3258157/1‑35 (MQ=255) cGGTTACTGTCGTGAAAAACAATAAAAACCGCCAt > 1:10409958/1‑35 (MQ=255) cGGTTACTGTCGTGAAAAACAATAAAAACCGCCAt > 1:20575529/1‑35 (MQ=255) cGGTTACTGTCGTGAAAAACAATAAAAACCGCCAt > 1:10714533/1‑35 (MQ=255) cGGTTACTGTCGTGAAAAACAATAAAAACCGCCAt > 1:9291103/1‑35 (MQ=255) ttACTGTCGTGAAAAACAATAAAAACCGCCATTGc > 1:13667475/1‑35 (MQ=255) tACTGTCGTGAAAAACAATAAAAACCGCCATTGca > 1:1294903/1‑35 (MQ=255) tACTGTCGTGAAAAACAATAAAAACCGCCATTGca > 1:7008387/1‑35 (MQ=255) tACTGTCGTGAAAAACAATAAAAACCGCCATTGca > 1:7508926/1‑35 (MQ=255) tACTGTCGTGAAAAACAATAAAAACCGCCATTGca > 1:3723101/1‑35 (MQ=255) aCTGTCGTGAAAAACAATAAAAACCGCCATTGcaa > 1:20048375/1‑35 (MQ=255) aCTGTCGTGAAAAACAATAAAAACCGCCATTGcaa > 1:6236158/1‑35 (MQ=255) aCTGTCGTGAAAAACAATAAAAACCGCCATTGcaa > 1:10466731/1‑35 (MQ=255) cTGTCGTGAAAAACAATAAAAACCGCCATTGcaac > 1:5701300/1‑35 (MQ=255) cTGTCGTGAAAAACAATAAAAACCGCCATTGcaac > 1:9786250/1‑35 (MQ=255) tGTCGTGAAAAACAATAAAAACCGCCATTGcaaca > 1:3844130/1‑35 (MQ=255) tGTCGTGAAAAACAATAAAAACCGCCATTGcaaca > 1:7024120/1‑35 (MQ=255) tGTCGTGAAAAACAATAAAAACCGCCATTGcaaca > 1:8276828/1‑35 (MQ=255) tGTCGTGAAAAACAATAAAAACCGCCATTGcaaca > 1:10353951/1‑35 (MQ=255) gTCGTGAAAAACATTAAAAACCGCCATTGcaacaa > 1:2701133/1‑35 (MQ=255) gTCGTGAAAAACAATAAAAACCGCCATTGcaacaa > 1:2276676/1‑35 (MQ=255) gTCGTGAAAAACAATAAAAACCGCCATTGcaacaa > 1:8665341/1‑35 (MQ=255) gTCGTGAAAAACAATAAAAACCGCCATTGcaacaa > 1:19933213/1‑35 (MQ=255) tCGTGAAAAACAATAAAAACCGCCATTGCAACAAt > 1:11898789/1‑35 (MQ=255) tCGTGAAAAACAATAAAAACCGCCATTGCAACAAt > 1:5018457/1‑35 (MQ=255) cGTGAAAAACAATAAAAACCGCCATTGCAACAATg > 1:17898945/1‑35 (MQ=255) gTGAAGAACAATAAAAACCGCCATTGCAACAATgg > 1:19197091/1‑35 (MQ=255) gTGAAAAACAATAAAAACCGCCATTGCAACAATgg > 1:3627194/1‑35 (MQ=255) gTGAAAAACAATAAAAACCGCCATTGCAACAATgg > 1:9725772/1‑35 (MQ=255) gTGAAAAACAATAAAAACCGCCATTGCAACAATgg > 1:4603795/1‑35 (MQ=255) gTGAAAAACAATAAAAACCGCCATTGCAACAATgg > 1:9259120/1‑35 (MQ=255) gTGAAAAACAATAAAAACCGCCATTGCAACAATgg > 1:810681/1‑35 (MQ=255) gTGAAAAACAATAAAAACCGCCATTGCAACAATgg > 1:17838934/1‑35 (MQ=255) gTGAAAAACAATAAAAACCGCCATTGCAACAATgg > 1:1475832/1‑35 (MQ=255) gTGAAAAACAATAAAAACCGCCATTGCAACAATgg > 1:16700395/1‑35 (MQ=255) gTGAAAAACAATAAAAACCGCCAATGCAACAATgg > 1:18706866/1‑35 (MQ=255) gTGAAAAACAATAAAAACCGCAATTGCAACAATgg < 1:10550341/35‑1 (MQ=255) tGAAAAACAATAAAAACCGCCATTGCAACAATGgc > 1:8250621/1‑35 (MQ=255) tGAAAAACAATAAAAACCGCCATTGCAACAATGgc > 1:18851616/1‑35 (MQ=255) tGAAAAACAATAAAAACCGCCATTGCAACAATGgc > 1:18121225/1‑35 (MQ=255) gAAAAACAATAAAAACCGCCATTGCAACAATGgcg > 1:6178822/1‑35 (MQ=255) aaaaaCAATAAAAACCccgacgtttttacgccggg > 1:8887032‑M2/1‑16 (MQ=255) aaaaaCAATAAAAACCGCCATTGCAACAATGgcgc > 1:12785660/1‑35 (MQ=255) aaaaaCAATAAAAACCGCCATTGCAACAATGgcgc > 1:20216765/1‑35 (MQ=255) aaaaCAATAAAAACCGCCATTGCAACAATGGCGCa > 1:12461512/1‑35 (MQ=255) aaaaCAATAAAAACCGCCATTGCAACAATGGCGCa > 1:3317841/1‑35 (MQ=255) aaaaCAATAAAAACCGCCATTGCAACAATGGCGCa > 1:14892800/1‑35 (MQ=255) aaaCAATGAAAACCccgacgtttttacgccgggtg > 1:14343073‑M2/1‑14 (MQ=255) aaaCAATAAAAACCGCCATTGCAACAATGGCGCaa > 1:13698390/1‑35 (MQ=255) aaCGATAAAAACCccgacgtttttacgccgggtgg > 1:4209508‑M2/1‑13 (MQ=255) aaCAATAAAAACCGCCATTGCAACAATGGCGCAAt > 1:3063173/1‑35 (MQ=255) aaCAAAAAAAACCccgacgtttttacgccgggtgg > 1:17312233‑M2/1‑13 (MQ=255) aCAATAAAAACCGCCATTGCAACAATGGCGCAAtt > 1:20171280/1‑35 (MQ=255) aCAATAAAAACCGCCATTGCAACAATGGCGCAAtt > 1:13584927/1‑35 (MQ=255) cAATAAAACCCccgacgtttttacgccgggtggcc > 1:4371276‑M2/1‑11 (MQ=255) cAATAAAAACCGCCATTGCAACAATGGCGCAATTc > 1:8392827/1‑35 (MQ=255) aaTAAAAACCGCCATTGCAACAATGGCGCAATTCg > 1:9328936/1‑35 (MQ=255) aaTAAAAAACccgacgtttttacgccgggtggcca > 1:9170726‑M2/1‑10 (MQ=255) aaAAAAAACCccgacgtttttacgccgggtggcca > 1:15193966‑M2/1‑10 (MQ=255) aTAAAAACCGCCATTGCAACAATGGCGCAATTCgg > 1:2645937/1‑35 (MQ=255) aTAAAAACCGCCATTGCAACAATGGCGCAATTCgg > 1:8399427/1‑35 (MQ=255) aTAAAAACCGCCATTGCAACAATGGCGCAATTCgg > 1:5223260/1‑35 (MQ=255) tAAAAACCGCCATTGCAACAATGGCGCAATTCGGa > 1:9838595/1‑35 (MQ=255) tAAAAACCGCCATTGCAACAATGGCGCAATTCGGa > 1:16237897/1‑35 (MQ=255) tAAAAACCGCCATTGCAACAATGGCGCAATTCGGa > 1:3947712/1‑35 (MQ=255) tAAAAACCGCCATTGCAACAATGGCGCAATTCGGa > 1:18732296/1‑35 (MQ=255) tAAAAACCGCCATTGCAACAATGGCGCAATTCGGa > 1:1652223/1‑35 (MQ=255) aaaacCCccgacgtttttacgccgggtggccattg > 1:15700351‑M2/1‑7 (MQ=255) aaaacCCccgacgtttttacgccgggtggccattg > 1:12190113‑M2/1‑7 (MQ=255) aaaaaCCGCCATTGCAACAATGGCGCAATTCGGAt > 1:13782328/1‑35 (MQ=255) aaaaaCCGCCATTGCAACAATGGCGCAATTCGGAt > 1:20425373/1‑35 (MQ=255) aaacCCccgacgtttttacgccgggtggccattgc > 1:18674071‑M2/1‑6 (MQ=255) aaaaCCGCCATTGCAACAATGGCGCAATTCGGATg > 1:5447218/1‑35 (MQ=255) aaaaCCGCCATTGCAACAATGGCGCAATTCGGATg > 1:4735554/1‑35 (MQ=255) aacCCccgacgtttttacgccgggtggccattgct > 1:17697441‑M2/1‑5 (MQ=255) aacCCccgacgtttttacgccgggtggccattgct > 1:2412569‑M2/1‑5 (MQ=255) aaaCCGCCATTGCAACAATGGCGCAATTCGGATGa > 1:13770871/1‑35 (MQ=255) aaaCCGCCATTGCAACAATGGCGCAATTCGGATGa > 1:16144908/1‑35 (MQ=255) aaaCCGCCATTGCAACAATGGCGCAATTCGGATGa > 1:6397361/1‑35 (MQ=255) ccccGCCATTGCAACAATGGCGCAATTCGGATGaa < 1:18274349/33‑1 (MQ=255) ccccGCCATTGCAACAATGGCGCAATTCGGATGaa < 1:11817490/33‑1 (MQ=255) aaCCccgacgtttttacgccgggtggccattgctg > 1:11883899‑M2/1‑4 (MQ=255) aaCCGCCATTGCAACAATGGCGCAATTCGGATGaa > 1:9351258/1‑35 (MQ=255) aCCccgacgtttttacgccgggtggccattgctgc > 1:20453676‑M2/1‑3 (MQ=255) aCCGCCATTGCAACAATGGCGCAATTCGGATGAAg > 1:4487924/1‑35 (MQ=255) aCCGCCATTGCAACAATGGCGCAATTCGGATGAAg > 1:20080477/1‑35 (MQ=255) aCCGCCATTGCAACAATGGCGCAATTCGGATGAAg > 1:2779531/1‑35 (MQ=255) ccccgacgtttttacgccgggtggccattgctgct > 1:16473555‑M2/1‑2 (MQ=255) ccGCCATTGCAACAATGGCGCAATTCGGATGAAGc > 1:15460500/1‑35 (MQ=255) cccgacgtttttacgccgggtggccattgctgctc > 1:18039722‑M2/1‑1 (MQ=255) cGCCATTGCAACAATGGCGCAATTCGGATGAAGcc < 1:15070374/35‑1 (MQ=255) cGCCATTGCAACAATGGCGCAATTCGGATGAAGcc > 1:18481755/1‑35 (MQ=255) cGCCATTGCAACAATGGCGCAATTCGGATGAAGcc < 1:918643/35‑1 (MQ=255) | AGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCC > REL606/4266625‑4266693 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |