New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1004939 =65 (0.630)15 (0.180) 5/40 NT 19.2% coding (1138/1401 nt) asnS asparaginyl‑tRNA synthetase
?REL606 1339539 = 72 (0.840)coding (610/1170 nt) yciM hypothetical protein

Only 100 of 157 total aligned reads displayed.

CAGCGACGATCTCGATCGTGCCATGACCTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCCG  >  REL606/1339505‑1339573
                                  |                                  
cgccttaacgaagacggtaaaaccgttgcggctaa                                    >  1:10920229‑M2/35‑35 (MQ=255)
cgccttaacgaagacggtaaaaccgttgcggctaa                                    >  1:18870936‑M2/35‑35 (MQ=255)
cgccttaacgaagacggtaaaaccgttgcggctaa                                    >  1:12651748‑M2/35‑35 (MQ=255)
cAGCGACGATCTCGATCGTGCCATGACCTTGCTaa                                    <  1:12282428/35‑1 (MQ=255)
 gccttaacgaagactgtaaaaccgttgcggctaaa                                   >  1:8482125‑M2/34‑35 (MQ=255)
 gccttaacgaagacggtaaaaccgttgcggctaaa                                   >  1:4295859‑M2/34‑35 (MQ=255)
 aGCGACGATCTCGATCGTGCCATGACCTTGCTaaa                                   >  1:20152597/1‑35 (MQ=255)
  gCGACGATCTCGATCGTGCCATGACCTTGCTaaaa                                  >  1:693554/1‑35 (MQ=255)
  ccttaacgaatacggtaaaaccgttgcggctaaaa                                  >  1:11400412‑M2/33‑35 (MQ=255)
  ccttaacgaagacggtaaaaccgttgcggctaaaa                                  >  1:12795527‑M2/33‑35 (MQ=255)
   cttaacgaagacggtaaaaccgttgcggctaaaaa                                 >  1:2672908‑M2/32‑35 (MQ=255)
   cgacgaTCTCGATCGTGCCATGACCTTGCTaaaaa                                 <  1:16962018/35‑1 (MQ=255)
   cgacgaTCTCGATCGTGCCATGACCTTGCTaaaaa                                 >  1:18028784/1‑35 (MQ=255)
    ttaacgaagacggtaaaaccgttgcggctaaagaa                                >  1:1589813‑M2/31‑35 (MQ=255)
    ttaacgaagacggtaaaaccgttgcggctaaaaaa                                >  1:910705‑M2/31‑35 (MQ=255)
    gacgaTCTCGATCGTGCCATGACCTTGCTaaaaaa                                >  1:19216209/1‑35 (MQ=255)
    gacgaTCTCGATCGTGCCATGACCTTGCTaaaaaa                                >  1:14545827/1‑35 (MQ=255)
     taacgaagacggtaaaaccgttgcggctaaaaaaa                               >  1:18681435‑M2/30‑35 (MQ=255)
     acgaTCTCGATCGTGCCATGACCTTGCTaaaaaaa                               >  1:20461054/1‑35 (MQ=255)
      cgaTCTCGATCGTGCCATGACCTTGCTAAAAAAAg                              >  1:3636042/1‑35 (MQ=255)
      aacgaagacggtaaaaccgttgcggctaaaaaagg                              >  1:10963992‑M2/29‑33 (MQ=255)
      aacgaagacggtaaaaccgttgcggctaaaaaaaa                              >  1:20144081‑M2/29‑34 (MQ=255)
      aacgaagacggtaaaaccgttgcggctaaaaaaaa                              >  1:1840674‑M2/29‑34 (MQ=255)
       gaTCTCGATCGTGCCATGACCTTGCTAAAAAAAgg                             >  1:11312800/1‑35 (MQ=255)
       gaTCTCGATCGTGCCATGACCTTGCTAAAAAAAgg                             >  1:10438321/1‑35 (MQ=255)
       acgaagacggtaaaaccgttgcggctaAAAAAAgg                             >  1:6168927‑M2/28‑35 (MQ=255)
        aTCTCGATCGTGCCATGACCTTGCTAAAAAAAggg                            >  1:19727222/1‑35 (MQ=255)
        aTCTCGATCGTGCCATGACCTTGCTAAAAAAAggg                            >  1:2654611/1‑35 (MQ=255)
        aTCTCGATCGTGCCATGACCTTGCTAAAAAAAggg                            <  1:3915075/35‑1 (MQ=255)
        aTCTCGATCGTGCCATGAACTTGCTAAAAAAAggg                            <  1:3489261/35‑1 (MQ=255)
         tctcGATCGTGCCATGACCTTGCTAAAAAAAgggg                           >  1:2260694/1‑35 (MQ=255)
         gaagacggtaaaaccgttgcggctaAAAAAAaggg                           >  1:5460775‑M2/26‑35 (MQ=255)
          ctcGATCGTGCCATGACCTTGCTAAAAAAAGGggc                          >  1:15282837/1‑35 (MQ=255)
          ctcGATCGTGCCATGACCTTGCTAAAAAAAGGggc                          <  1:3622526/35‑1 (MQ=255)
          ctcGATCGTGCCATGACCTTGCTAAAAAAAGGggc                          >  1:8026499/1‑35 (MQ=255)
           tcGATCGTGCCATTACCTTGCTAAAAAAAGGggcg                         >  1:6518590/1‑35 (MQ=255)
           tcGATCGTGCCATGACCTTGCTAAAAAAAGGggcg                         >  1:14844854/1‑35 (MQ=255)
           tcGATCGTGCCATGACCTTGCTAAAAAAAGGggcg                         <  1:14832818/35‑1 (MQ=255)
           tcGATCGTGCCATGACCTTGCTAAAAAAAGGggcg                         <  1:12724179/35‑1 (MQ=255)
           agacggtaaaaccgttgcggctaAAAAaaggggtg                         >  1:2261549‑M2/24‑33 (MQ=255)
            gacggtaaaaccgttgcggctaAAAAAAGGggggg                        >  1:7033477‑M2/23‑35 (MQ=255)
            cGATCGTGCCATGACCTTGCTAAAAAAAGGggcgg                        <  1:17773949/35‑1 (MQ=255)
            cGATCGTGCCATGACCTTGCTAAAAAAAGGggcgg                        <  1:6313505/35‑1 (MQ=255)
            cGATCGTGCCATGACCTTGCTAAAAAAAGGggcgg                        <  1:6878169/35‑1 (MQ=255)
             gATCGTGCCATGACCTTGCTAAAAAAAGGggcggc                       <  1:15454483/35‑1 (MQ=255)
             gATCGTGCCATGACCTTGCTAAAAAAAGGggcggc                       >  1:812742/1‑35 (MQ=255)
             gATCGTGCCATGACCTTGCTAAAAAAAGGggcggc                       >  1:5989548/1‑35 (MQ=255)
              aTCGTGCCATGACCTTGCTAAAAAAAGGggcggcg                      <  1:17658327/35‑1 (MQ=255)
              aTCGTGCCATGACCTTGCTAAAAAAAGGggcggcg                      <  1:8614839/35‑1 (MQ=255)
              aTCGTGCCATGACCTTGCTAAAAAAAGGggcggcg                      <  1:11611127/35‑1 (MQ=255)
                cGTGCCATGACCTTGCTAAAAAAAGGggcggcggc                    >  1:17464285/1‑35 (MQ=255)
                cGTGCCATGACCTTGCTAAAAAAAGGggcggcggc                    <  1:18478488/35‑1 (MQ=255)
                cGTGCCATGACCTTGCTAAAAAAAGGggcggcggc                    <  1:16387419/35‑1 (MQ=255)
                 gTGCCATGACCTTGCTAAAAAAAGGGGCGGCGGCa                   <  1:4108449/35‑1 (MQ=255)
                 gTGCCATGACCTTGCTAAAAAAAGGGGCGGCGGCa                   >  1:12918215/1‑35 (MQ=255)
                 gTGCCATGACCTTGCTAAAAAAAGGGGCGGCGGCa                   >  1:4300621/1‑35 (MQ=255)
                  tGCCATGACCTTGCTAAAAAAAGGGGCGGCGGCAg                  >  1:10103874/1‑35 (MQ=255)
                  tGCCATGACCTTGCTAAAAAAAGGGGCGGCGGCAg                  <  1:12090051/35‑1 (MQ=255)
                  tGCCATGACCTTGCTAAAAAAAGGGGCGGCGGCAg                  >  1:6312859/1‑35 (MQ=255)
                   gCCATGACCTTGCTAAAAAAAGGGGCGGCGGCAGa                 <  1:12152480/35‑1 (MQ=255)
                   gCCATGACCTTGCTAAAAAAAGGGGCGGCGGCAGa                 <  1:11052431/35‑1 (MQ=255)
                   gCCATGACCTTGCTAAAAAAAGGGGCGGCGGCAGa                 >  1:10482669/1‑35 (MQ=255)
                    ccATGACCTTGCTAAAAAAAGGGGCGGCGGCAGAt                >  1:2366080/1‑35 (MQ=255)
                    ccATGACCTTGCTAAAAAAAGGGGCGGCGGCAGAt                >  1:14556055/1‑35 (MQ=255)
                     cATGACCTTGCTAAAAAAAGGGGCGGCGGCAGATa               >  1:11787317/1‑35 (MQ=255)
                     cATGACCTTGCTAAAAAAAGGGGCGGCGGCAGATa               <  1:7725668/35‑1 (MQ=255)
                     cATGACCTTGCTAAAAAAAGGGGCGGCGGCAGATa               <  1:7111960/35‑1 (MQ=255)
                      aTGACCTTGCTAAAAAAAGGGGCGGCGGCAGATaa              >  1:1208579/1‑35 (MQ=255)
                      aTGACCTTGCTAAAAAAAGGGGCGGCGGCAGATaa              >  1:19313986/1‑35 (MQ=255)
                      aTGACCTTGCTAAAAAAAGGGGCGGCGGCAGATaa              >  1:2747808/1‑35 (MQ=255)
                       tGACCTTGCTAAAAAAAGGGGCGGCGGCAGATaaa             <  1:19405580/35‑1 (MQ=255)
                       tGACCTTGCTAAAAAAAGGGGCGGCGGCAGATaaa             >  1:3067702/1‑35 (MQ=255)
                        gACCTTGCTAAAAAAAGGGGCGGCGGCAGATaaaa            >  1:6662868/1‑35 (MQ=255)
                        gACCTTGCTAAAAAAAGGGGCGGCGGCAGATaaaa            <  1:20505905/35‑1 (MQ=255)
                        gACCTTGCTAAAAAAAGGGGCGGCGGCAGATaaaa            <  1:10074429/35‑1 (MQ=255)
                        gACCTTGCTAAAAAAAGGGGCGGCGGCAGATaaaa            >  1:13880950/1‑35 (MQ=255)
                         aCCTTGCTAAAAAAAGGGGCGGCGGCAGATaaaaa           <  1:10944242/35‑1 (MQ=255)
                         aCCGTGCTAAAAAAAGGGGCGGCGGCAGATaaaaa           <  1:15158554/35‑1 (MQ=255)
                          ccTTGCTAAAAAAAGGGGCGGCGGGAGATAAAAAc          >  1:19793026/1‑35 (MQ=255)
                          ccTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAAc          >  1:9823790/1‑35 (MQ=255)
                          ccTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAAc          <  1:6123359/35‑1 (MQ=255)
                          ccTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAAc          <  1:13897968/35‑1 (MQ=255)
                          ccTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAAc          <  1:8749558/35‑1 (MQ=255)
                           cTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAACa         >  1:12252011/1‑35 (MQ=255)
                           cTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAACa         >  1:15912529/1‑35 (MQ=255)
                           cTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAACa         >  1:18267564/1‑35 (MQ=255)
                            ttGCTAAAAAAAGGGGCGGCGGCAGATAAAAACAg        <  1:7651719/35‑1 (MQ=255)
                            ttGCTAAAAAAAGGGGCGGCGGCAGATAAAAACAg        >  1:2362542/1‑35 (MQ=255)
                            ttGCTAAAAAAAGGGGCGGCGGCAGATAAAAACAg        >  1:11524906/1‑35 (MQ=255)
                             tGCTAAAAAAAGGGGCGGCGGCAGATAAAAACAgc       <  1:13424374/35‑1 (MQ=255)
                              gctaAAAAAAGGGGCGGCGGCAGATAAAAACAgcg      >  1:8891801‑M2/5‑35 (MQ=255)
                              gctaAAAAAAGGGGCGGCGGCAGATAAAAACAgcg      >  1:20230753‑M2/5‑35 (MQ=255)
                               ctaAAAAAAGGGGCGGCGGCAGATAAAAACAgcgc     <  1:16897670‑M2/32‑1 (MQ=255)
                               ctaAAAAAAGGGGCGGCGGCAGATAAAAACAgcgc     >  1:17417505‑M2/4‑35 (MQ=255)
                               ctaAAAAAAGGGGCGGCGGCAGATAAAAACAgcgc     >  1:8407172‑M2/4‑35 (MQ=255)
                                 aAAAAAAGGGGCGGCGGCAGATAAAAACAGCGccc   >  1:1569094‑M2/2‑35 (MQ=255)
                                 aAAAAAAGGGGCGGCGGCAGATAAAAACAGCGccc   <  1:15745319‑M2/34‑1 (MQ=255)
                                 aAAAAAAGGGGCGGCGGCAGATAAAAACAGCGccc   >  1:4638167‑M2/2‑35 (MQ=255)
                                  aaaaaaGGGGCGGCGGCAGATAAAAACAGCGCCcg  <  1:17919004/35‑1 (MQ=255)
                                  aaaaaaGGGGCGGCGGCAGATAAAAACAGCGCCcg  >  1:3298725/1‑35 (MQ=255)
                                  |                                  
CAGCGACGATCTCGATCGTGCCATGACCTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCCG  >  REL606/1339505‑1339573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.