New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1587129 =65 (0.630)7 (0.090) 3/36 NT 12.3% coding (244/435 nt) marR DNA‑binding transcriptional repressor of multiple antibiotic resistance
?REL606 2696580 = 51 (0.660)coding (481/2145 nt) nrdE ribonucleotide‑diphosphate reductase alpha subunit

Only 100 of 130 total aligned reads displayed.

CGATGAAATGCTGTCAGGACGCTTTCAGCCAGCCACGCCAACATTCCTCAACTGCGGTAAGCAGCAGCG  >  REL606/2696546‑2696614
                                  |                                  
cGATGAAATGCTGTCAGGACGCTTTCAgccagcca                                    <  1:2496727/35‑1 (MQ=255)
cGATGAAATGCTGTCAGGACGCTTTCAgccagcca                                    >  1:2144571/1‑35 (MQ=255)
cGATGAAATGCTGTCAGGACGCTTTCAgccagcca                                    >  1:14884169/1‑35 (MQ=255)
cGATGAAATGCTGTCAGGACGCTTTCAgccagcca                                    >  1:1439513/1‑35 (MQ=255)
cGATGAAATGCTGTCAGGACGCTTTCAgccagcca                                    >  1:14151484/1‑35 (MQ=255)
 gATGAAATGCTGTCAGGACGCTTTCAGCCAGCCAc                                   >  1:2582038/1‑35 (MQ=255)
  aTGAAATGCTGTCAGGACGCTTTCAGCCAGCCACg                                  >  1:7016920/1‑35 (MQ=255)
  aTGAAATGCTGTCAGGACGCTTTCAGCCAGCCACg                                  >  1:12133296/1‑35 (MQ=255)
  aTGAAATGCTGTCAGGACGCTTTCAGCCAGCCACg                                  >  1:13635622/1‑35 (MQ=255)
   tGAAATGCTGTCAGGACGCTTTCAGCCAGCCACGc                                 <  1:6675312/35‑1 (MQ=255)
   tGAAATGCTGTCAGGACGCTTTCAGCCAGCCACGc                                 <  1:16200133/35‑1 (MQ=255)
   tGAAATGCTGTCAGGACGCTTTCAGCCAGCCACGc                                 >  1:13321337/1‑35 (MQ=255)
    gAAATGCTGTCAGGACGCTTTCAGCCAGCCACGcc                                >  1:19497856/1‑35 (MQ=255)
    gAAATGCTGTCAGGACGCTTTCAGCCAGCCACGcc                                >  1:13785131/1‑35 (MQ=255)
     aaaTGCTGTCAGGACGCTTTCAGCCAGCCACGcta                               >  1:13042626/1‑33 (MQ=255)
     aaaTGCTGTCAGGACGCTTTCAGCCAGCCACGCCa                               >  1:15398054/1‑35 (MQ=255)
      aaTGCTGTCAGGACGCTTTCAGCCAGCCACGCCaa                              >  1:7928941/1‑35 (MQ=255)
      aaTGCTGTCAGGACGCTTTCAGCCAGCCACGCCaa                              >  1:11235852/1‑35 (MQ=255)
      aaTGCTGTCAGGACGCTTTCAGCCAGCCACGCCaa                              >  1:10457984/1‑35 (MQ=255)
        tGCTGTCAGGACGCTTTCAGCCAGCCACGCCAACa                            >  1:11110323/1‑35 (MQ=255)
         gCTGTCAGGACGCTTTCAGCCAGCCACGCCAACAt                           >  1:11398649/1‑35 (MQ=255)
          cTGTCAGGACGCTTTCAGCCAGCCACGCCAACAtt                          >  1:11466668/1‑35 (MQ=255)
           tGTCAGGACGCTTTCAGCCAGCCACGCCAACATTc                         >  1:8425408/1‑35 (MQ=255)
           tGTCAGGACGCTTTCAGCCAGCCACGCCAACATTc                         >  1:13554223/1‑35 (MQ=255)
           tGTCAGGACGCTTTCAGCCAGCCACGCCAACATTc                         >  1:2710158/1‑35 (MQ=255)
           tGTCAGGACGCTTTCAGCCAGCCACGCCAACATTc                         >  1:14894228/1‑35 (MQ=255)
           tGTCAGGACGCTTTCAGCCAGCCACGCCAAAATTc                         >  1:17619949/1‑35 (MQ=255)
             tCAGGACGCTTTCAGCCAGCCACGCCAACATTCCt                       >  1:4925054/1‑35 (MQ=255)
              cAGGACGCTTTCAGCCAGCCACGCCAACATTCCTc                      >  1:20195838/1‑35 (MQ=255)
              cAGGACGCTTTCAGCCAGCCACGCCAACATTCCTc                      >  1:11017227/1‑35 (MQ=255)
               gggACGCTTTCAGCCAGCCACGCCAACATTCCTCa                     <  1:19040767/34‑1 (MQ=255)
               aGGACGTTTTCACCCAGCCACGCCAACATTCCTCa                     <  1:1706468/35‑1 (MQ=37)
               aGGACGCTTTCAGCCAGCCACGCCAACATTCCTCa                     >  1:6527483/1‑35 (MQ=255)
               aGGACGCTTTCAGCCAGCCACGCCAACATTCCTCa                     >  1:16085355/1‑35 (MQ=255)
                ggACGCTTTCAGCCAGCCACGCCAACATTCCTCaa                    >  1:15773018/1‑35 (MQ=255)
                ggACGCTTCCAGCCAGCCACGCCAACATTCCTCaa                    <  1:245777/35‑1 (MQ=255)
                 gACGCTTTCAGCCAGCCACGCCAACATTCCTCacc                   >  1:15350013/1‑33 (MQ=255)
                 gACGCTTTCAGCCAGCCACGCCAACATTCCTCAAc                   >  1:2753555/1‑35 (MQ=255)
                  ccGCTTTCACCCAGCCACGCCAACATTCCTCAACt                  <  1:3604297/34‑1 (MQ=255)
                  aCGTTTTCACCCAGCCACGCCAACATTCCTCAACt                  <  1:5537152/35‑1 (MQ=37)
                  aCGCTTTCAGCCAGCCACGCCAACATTCCTCAACt                  >  1:19102639/1‑35 (MQ=255)
                  aCGCTTTCAGCCAGCCACGCCAACATTCCTCAACt                  >  1:8563865/1‑35 (MQ=255)
                  aCGCTTTCAGCCAGCCACGCCAACATTCCTCAACt                  <  1:1166542/35‑1 (MQ=255)
                  aCGCTTCCAGCCAGCCACGCCAACATTCCTCAACt                  <  1:4969669/35‑1 (MQ=255)
                   cGCTTTCAGCCAGCCACGCCAACATTCCTCAACTg                 <  1:3320685/35‑1 (MQ=255)
                    gCTTTCAGCCAGCCACGCCAACATTCCTCAACTGc                >  1:16934220/1‑35 (MQ=255)
                    gCTTTCAGCCAGCCACGCCAACATTCCTCAACTGc                >  1:10641274/1‑35 (MQ=255)
                    gCTTTCAGCCAGCCACGCCAACATTCCTCAACTGc                >  1:13968420/1‑35 (MQ=255)
                    gCTTTCAGCCAGCCACGCCAACATTCCTCAACTGc                >  1:5974172/1‑35 (MQ=255)
                     cttccgcccagccACGCCAACATTCCTCAACTGCg               <  1:16941114‑M2/22‑1 (MQ=255)
                     cttccacccagccACGCCAACATTCCTCAACTGCg               <  1:3390100‑M2/22‑1 (MQ=255)
                      tttcacccagccACGCCAACATTCCTCAACTGCgg              <  1:4653510‑M2/23‑1 (MQ=255)
                      tttcacccagccACGCCAACATTCCTCAACTGCgg              <  1:1796549‑M2/23‑1 (MQ=255)
                      tttCAGCCAGCCACGCCAACATTCCTCAACTGCgg              >  1:6147632/1‑35 (MQ=255)
                      tttCAGCCAGCCACGCCAACATTCCTCAACTGCgg              >  1:10487140/1‑35 (MQ=255)
                      ttccagccagccACGCCAACATTCCTCAACTGCgg              <  1:12331768‑M2/23‑1 (MQ=255)
                      ttccacccagccACGCCAACATTCCTCAACTGCgg              <  1:16847028‑M2/23‑1 (MQ=255)
                       ttCAGCCAGCCACGCCAACATTCCTCAACTGCgtt             >  1:8034655/1‑33 (MQ=255)
                       ttCAGCCAGCCACGCCAACATTCCTCAACTGCGGt             <  1:2647006/35‑1 (MQ=255)
                       ttCAGCCAGCCACGCAAACATTCCTCAACTGCGGt             <  1:4562007/35‑1 (MQ=255)
                       tccacccagccACGCCAACATTCCTCAACTGCGGt             <  1:15557753‑M2/24‑1 (MQ=255)
                        tCAGCCAGCCACGCCAACATTCCTCAACTGCGGTa            >  1:12872319/1‑35 (MQ=255)
                        tCAGCCAGCCACGCCAACATTCCTCAACTGCGGTa            >  1:20292548/1‑35 (MQ=255)
                        tCAGCCAGCCACGCCAACATTCCTCAACTGCGGTa            >  1:19087775/1‑35 (MQ=255)
                        ccagccagcCACGCCAACATTCCTCAACTGCGGTa            <  1:15496316/34‑1 (MQ=255)
                        ccagccagcCACGCCAACATTCCTCAACTGCGGTa            <  1:8216039/34‑1 (MQ=255)
                        ccacccagccACGCCAACATTCCTCAACTGCGGTa            <  1:2896823‑M2/25‑1 (MQ=255)
                        ccacccagccACGCCAACATTCCTCAACTGCGGTa            <  1:4165843‑M2/25‑1 (MQ=255)
                         nngccnnccaCGCCAACATTCCTCAACTGCGGTaa           <  1:15712252/33‑1 (MQ=255)
                         cagccagcCACGCCAACATTCCTCAACTGCGGTaa           >  1:14222569/1‑35 (MQ=255)
                         cacccagccACGCCAACATTCCTCAACTGCGGTaa           <  1:13846632‑M2/26‑1 (MQ=255)
                         cacccagccACGCCAACATTCCTCAACTGCGGTaa           <  1:8977748‑M2/26‑1 (MQ=255)
                          agccagccACGCCAACATTCCTCAACTGCGGTAag          >  1:13371293/1‑35 (MQ=255)
                          acccagccACGCCAACATTCCTCAACTGCGGTAag          <  1:471338‑M2/27‑1 (MQ=255)
                           gccagccaCGCCAACATTCCTCAACTGCGGTAagc         >  1:7014367/1‑35 (MQ=255)
                           gccagccaCGCCAACATTCCTCAACTGCGGTAagc         >  1:4609784/1‑35 (MQ=255)
                           cccagccACGCCAACATTCCTCAACTGCGGTAagc         <  1:6177876‑M2/28‑1 (MQ=255)
                           cccagccACGCCAACATTCCTCAACTGCGGTAagc         <  1:10736242‑M2/28‑1 (MQ=255)
                           cccagccACGCCAACATTCCTCAACTGCCGTAagc         <  1:12697658‑M2/28‑1 (MQ=255)
                            ccagccACGCCAACATTCCTCAACTGCGGTAagcn        <  1:15732409‑M2/29‑1 (MQ=255)
                            ccagccACGCCAACATTCCTCAACTGCGGTAagca        <  1:6435942‑M2/29‑1 (MQ=255)
                            ccagccACGCCAACATTCCTCAACTGCGGTAagca        <  1:12441941‑M2/29‑1 (MQ=255)
                            ccagccACGCCAACATTCCTCAACTGCGGTAagca        <  1:14073691‑M2/29‑1 (MQ=255)
                             cagccACGCCAACATTCCTCAACTGCGGTAagcag       >  1:9511675‑M2/6‑35 (MQ=255)
                             cagccACGCCAACATTCCTCAACTGCGGTAagcag       >  1:4482718‑M2/6‑35 (MQ=255)
                             cagccACGCCAACATTCCTCAACTGCGGTAagcag       <  1:3964350‑M2/30‑1 (MQ=255)
                             cagccACGCCAACATTCCTCAACTGCGGTAagcag       <  1:3158460‑M2/30‑1 (MQ=255)
                               gccACGCCAACATTCCTCAACTGCGTTAagcagca     >  1:20065600‑M2/4‑35 (MQ=255)
                               gccACGCCAACATTCCTCAACTGCGGTAagcagca     <  1:7426445‑M2/32‑1 (MQ=255)
                               gccACGCCAACATTCCTCAACTGCGGTAagcagca     <  1:8057963‑M2/32‑1 (MQ=255)
                               gccACGCCAACATTCCTCAACTGCGGTAagcagca     <  1:8376519‑M2/32‑1 (MQ=255)
                               gccACGCCAACATTCCTCAACTGCGGTAagcagca     <  1:9380835‑M2/32‑1 (MQ=255)
                               gccACGCCAACATTCCTCAACTGCGGTAagcagca     <  1:12938985‑M2/32‑1 (MQ=255)
                                ccACGCCAACATTCCTCAACTGCGGTAagcagcag    <  1:2143897‑M2/33‑1 (MQ=255)
                                ccACGCCAACATTCCTCAACTGCGGTAagcagcag    >  1:20361811‑M2/3‑35 (MQ=255)
                                 caCGCCACCATTCCTCACCTGCGGTAagcagcagc   <  1:3498512/35‑1 (MQ=37)
                                 cACGCCAACATTCCTCAACTGCTGTAagcagcagc   >  1:17653050‑M2/2‑35 (MQ=255)
                                 cACGCCAACATTCCTCAACTGCGGTAagcagcagc   <  1:3679970‑M2/34‑1 (MQ=255)
                                 cACCCCAACATTCCTCAACTGCGGTAagcagcagc   <  1:4163973‑M2/34‑1 (MQ=255)
                                  aCGCCAACATTCCTCAACTGCGGTAAGCAGCAgcg  <  1:16295717/35‑1 (MQ=255)
                                  |                                  
CGATGAAATGCTGTCAGGACGCTTTCAGCCAGCCACGCCAACATTCCTCAACTGCGGTAAGCAGCAGCG  >  REL606/2696546‑2696614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.