New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 327441 =112 (1.090)14 (0.140) 5/48 NT 14.4% intergenic (+199/‑37) prpE/codB predicted propionyl‑CoA synthetase with ATPase domain/cytosine transporter
?REL606 1238616 = 54 (0.530)coding (896/1299 nt) dadA D‑amino acid dehydrogenase small subunit

Only 100 of 183 total aligned reads displayed.

TGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATT  >  REL606/327407‑327475
                                  |                                  
tGCTTTTTATCTTCAGATGAATAGAATGCGGCGGa                                    >  1:9369274/1‑35 (MQ=255)
acacgaatgcggttatcgaaacgggtaatggcgaa                                    <  1:17861928‑M1/1‑1 (MQ=255)
 gCTTTTTATCTTCAGATGAATAGAATGCGGCGGAt                                   <  1:18091505/35‑1 (MQ=255)
 gCTTTTTATCTTCAGATGAATAGAATGCGGCGGAt                                   <  1:7994246/35‑1 (MQ=255)
  acgaatgcggttatcgaaacgggtaatggcgaAtt                                  <  1:11655752‑M1/3‑1 (MQ=255)
  acgaatgcggttatcgaaacgggtaatggcgaAtt                                  <  1:6943466‑M1/3‑1 (MQ=255)
   tttttATCTTCAGATGAATAGAATGCGGCGGAttt                                 <  1:2910143/35‑1 (MQ=255)
   tttttATCTTCAGATGAATAGAATGCGGCGGAttt                                 >  1:5168591/1‑35 (MQ=255)
    ttttATCTTCAGATGAATAGAATGCGGCGGGtttt                                >  1:12336382/1‑35 (MQ=255)
    ttttATCTTCAGATGAATAGAATGCGGCGGAtttt                                >  1:16770570/1‑35 (MQ=255)
    ttttATCTTCAGATGAATAGAATGCGGCGGAtttt                                <  1:14565389/35‑1 (MQ=255)
    gaatgcggttatcgaaacgggtaatggcgaAtttt                                <  1:5708027‑M1/5‑1 (MQ=255)
    gaatgcggttatcgaaacgggtaatggcgaAtttt                                <  1:13836290‑M1/5‑1 (MQ=255)
     tttATCTTCAGATGAATAGAATGCGGCGGGttttt                               >  1:7227004/1‑35 (MQ=255)
     tttATCTTCAGATGAATAGAATGCGGCGGAttttt                               <  1:18546132/35‑1 (MQ=255)
     tttATCTTCAGATGAATAGAATGCGGCGGAttttt                               >  1:3349579/1‑35 (MQ=255)
     tttATCTTCAGATGAATAGAATGCGGCGGAttttt                               <  1:13136214/35‑1 (MQ=255)
     tttATCTTCAGATGAATAGAATGCGGCGGAttttt                               <  1:12211414/35‑1 (MQ=255)
     aatgcggttatcgaaacgggtaatggcgaAttttt                               <  1:11939163‑M1/6‑1 (MQ=255)
      ttATCTTCAGATGAATAGAATGCGGCGGAtttttt                              >  1:11299023/1‑35 (MQ=255)
      ttATCTTCAGATGAATAGAATGCGGCGGAtttttt                              <  1:19525823/35‑1 (MQ=255)
      atgcggttatcgaaacgggtaatggcgaAtttttt                              <  1:454845‑M1/7‑1 (MQ=255)
       tATCTTCAGATGAATAGAATGCGGCGGATTTTTTg                             >  1:8752894/1‑35 (MQ=255)
       tATCTTCAGATGAATAGAATGCGGCGGATTTTTTg                             <  1:13223119/35‑1 (MQ=255)
       tATCTTCAGATGAATAGAATGCGGCGGATTTTTTg                             <  1:14765953/35‑1 (MQ=255)
       tATCTTCAGATGAATAGAATGCGGCGGATTTTTTg                             <  1:18375244/35‑1 (MQ=255)
       tATCTTCAGATGAATAGAATGCGGCGGATTTTTTg                             <  1:2742694/35‑1 (MQ=255)
        aTCTTCAGATGAATAGAATGCGGCGGGTTTTTTgg                            >  1:20155886/1‑35 (MQ=255)
        aTCTTCAGATGAATAGAATGCGGCGGATTTTTTgg                            >  1:19310752/1‑35 (MQ=255)
         tCTTCAGATGAATAGAATGCGGCGGGTTTTTTggg                           >  1:8386084/1‑35 (MQ=255)
         tCTTCAGATGAATAGAATGCGGCGGATTTTTTggg                           >  1:12522833/1‑35 (MQ=255)
         tCTTCAGATGAATAGAATGCGGCGGATTTTTTggg                           <  1:10165972/35‑1 (MQ=255)
         cggttatcgaaacgggtaatggcgaATTTTTTggg                           <  1:18675674‑M1/10‑1 (MQ=255)
          ggttatcgaaacgggtaatggcgaATTTTTTGGGt                          <  1:17547192‑M1/11‑1 (MQ=255)
          ggttatcgaaacgggtaatggcgaATTTTTTGGGt                          <  1:5918530‑M1/11‑1 (MQ=255)
          ggttatcgaaacgggtaatggcgaATTTTTTGGGt                          <  1:9216358‑M1/11‑1 (MQ=255)
          cTTCAGATGAATAGAATGCGGCGGATTTTTTGGGt                          >  1:11309942/1‑35 (MQ=255)
           ttCAGATGAATAGAATGCGGCGGATTTTTTggggt                         >  1:16560445/1‑33 (MQ=255)
           ttCAGATGAATAGAATGCGGCGGATTTTTTGGGtt                         <  1:6446757/35‑1 (MQ=255)
           ttCAGATGAATAGAATGCGGCGGATTTTTTGGGtt                         <  1:763090/35‑1 (MQ=255)
           ttCAGATGAATAGAATGCGGCGGATTTTTTGGGtt                         <  1:11083978/35‑1 (MQ=255)
           gttatcgaaacgggtaatggcgaATTTTTTGGGtt                         <  1:6673431‑M1/12‑1 (MQ=255)
            tCAGATGAATAGAATGCGGCGGATTTTTTGGGttt                        <  1:15989455/35‑1 (MQ=255)
            tCAGATGAATAGAATGCGGCGGATTTTTTGGGttt                        >  1:5041685/1‑35 (MQ=255)
             tatcgaaacgggtaatggcgaTTTTTTTGGgttta                       <  1:10398839‑M1/14‑2 (MQ=255)
             cAGATGAATAGAATGCGGCGGATTTTTTGGGGTTc                       >  1:6937307/1‑35 (MQ=255)
              ctaTGAATAGAATGCGGCGGATTTTTTGGGTTTCa                      <  1:3770591/33‑1 (MQ=255)
              atcgaaacgggtaatggcgaATTTTTTGggtttat                      <  1:993304‑M1/15‑3 (MQ=255)
              aGATGAATAGAATGCGGCGGATTTTTTGGGTTTCa                      <  1:14060410/35‑1 (MQ=255)
               gATGAATAGAATGCGGCGGATTTTTTGGGTTTCaa                     >  1:6950279/1‑35 (MQ=255)
                aTGAATAGAATGCGGCTGATTTTTTGGGTTTCaaa                    >  1:17049221/1‑35 (MQ=255)
                aTGAATAGAATGCGGCGGGTTTTTTGGGGTTCaaa                    >  1:7179399/1‑35 (MQ=37)
                aTGAATAGAATGCGGCGGATTTTTTTGGGTTCaaa                    >  1:19674846/1‑35 (MQ=37)
                aTGAATAGAATGCGGCGGATTTTTTGGGTTTTaaa                    >  1:16547029/1‑35 (MQ=255)
                aTGAATAGAATGCGGCGGATTTTTTGGGTTTCaaa                    >  1:18411996/1‑35 (MQ=255)
                aTGAATAGAATGCGGCGGATTTTTTGGGTTTCaaa                    <  1:15131619/35‑1 (MQ=255)
                aTGAATAGAATGCGGCGGATTTTTTGGGTTTCaaa                    <  1:19504116/35‑1 (MQ=255)
                aTGAATAGAATGCGGCGGATTTTTTGGGTTTCaaa                    >  1:18162836/1‑35 (MQ=255)
                aTGAATAGAATGCGGCGGATTTTTTGGGTTTCaaa                    <  1:16317056/35‑1 (MQ=255)
                 tGAATAGAATGCGGCGGGTTTTTTTGGTTCCAAAc                   >  1:2373350/1‑35 (MQ=21)
                 tGAATAGAATGCGGCGGATTTTTTGGGTTTCAAAc                   <  1:18275092/35‑1 (MQ=255)
                 tGAATAGAATGCGGCGGATTTTTTGGGTTTCAAAc                   <  1:344096/35‑1 (MQ=255)
                  gAATAGAATGCGGCGGATTTTTTGGGTTTCAAACa                  <  1:1379836/35‑1 (MQ=255)
                  gAATAGAATGCGGCGGATTTTTTGGGTTTCAAACa                  >  1:8986478/1‑35 (MQ=255)
                   aaTAGAATGCGGCGGGTTTTTTGGGTTTCAAACAg                 >  1:6810606/1‑35 (MQ=255)
                   aaTAGAATGCGGCGGATTTTTTGGGTTTCAAAccg                 >  1:4691262/1‑33 (MQ=255)
                   aaTAGAATGCGGCGGATTTTTTGGGTTTCAAACAg                 <  1:2955664/35‑1 (MQ=255)
                   aaTAGAATGCGGCGGATTTTTTGGGTTTCAAACAg                 <  1:14485886/35‑1 (MQ=255)
                   aaTAGAATGCGGCGGATTTTTTGGGTTTCAAACAg                 <  1:9029991/35‑1 (MQ=255)
                    aTAGAATGCGGCGGATTTTTTGGGTTTCAAACAGc                <  1:542149/35‑1 (MQ=255)
                     tAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCa               <  1:7813971/35‑1 (MQ=255)
                      aGAATGCGGCGGATTTTTTGGGTTTCAAACAGCaa              >  1:230722/1‑35 (MQ=255)
                      aGAATGCGGCGGATTTTTTGGGTTTCAAACAGCaa              <  1:10660064/35‑1 (MQ=255)
                       gAATGCGGCGGATTTTTTGGGTTTCAAACAGCaaa             <  1:16853255/35‑1 (MQ=255)
                        aaTGCGGCGGATTTTTTGGGTTTCAAACAGCaaaa            <  1:4487591/35‑1 (MQ=255)
                         aTGCGGCGGATTTTTTGGGTTTCAAACAGCaaaaa           >  1:15786343/1‑35 (MQ=255)
                           gcggcgGATTTTTTGGGTTTCAAACAGCAAAAAgg         <  1:15556752/35‑1 (MQ=255)
                            cggcggATTTTTTGGGTTTCAAACAGCAAAAAggt        >  1:7470158/1‑34 (MQ=255)
                            cggcggATTTTTTGGGTTTCAAACAGCAAAAAggg        <  1:9671870/35‑1 (MQ=255)
                             ggcggATTTTTTGGGTTTCAAACAGCAAAAAtggg       >  1:1414455/1‑35 (MQ=255)
                             ggcggATTTTTTGGGTTTCAAACAGCAAAAAgggg       <  1:3883855/35‑1 (MQ=255)
                             ggcggATTTTTTGGGTTTCAAACAGCAAAAAgggg       >  1:12595906/1‑35 (MQ=255)
                             ggcggATTTTTTGGGTTTCAAACAGCAAAAAgggg       >  1:7561004/1‑35 (MQ=255)
                             ggcggATTTTTTGGGTTTCAAACAGCAAAAAgggg       >  1:20476957/1‑35 (MQ=255)
                             ggcggATTTTTTGGGTTTCAAACAGCAAAAAgggg       >  1:19914837/1‑35 (MQ=255)
                              gcggATTTTTTGGGTTTCAAACAGCAAAAAggggg      >  1:1242328/1‑35 (MQ=255)
                              gcggATTTTTTGGGTTTCAAACAGCAAAAAggggg      >  1:12143974/1‑35 (MQ=255)
                              gcggATTTTTTGGGTTTCAAACAGCAAAAAggggg      >  1:1000272/1‑35 (MQ=255)
                               cggATTTTTTGGGTTTCAAACATCAAAAAGGGGGa     >  1:11358764/1‑35 (MQ=255)
                               cggATTTTTTGGGTTTCAAACAGCAAAAAGGGGGa     >  1:13248249/1‑35 (MQ=255)
                               cggATTTTTTGGGTTTCAAACAGCAAAAAGGGGGa     <  1:5824774/35‑1 (MQ=255)
                               cggATTTTTTGGGTTTCAAACAGCAAAAAGGGGGa     <  1:1534830/35‑1 (MQ=255)
                               aggATTTTTTGGGTTTCAAACAGCAAAAAGGGGGa     <  1:1520282/34‑1 (MQ=255)
                                ggATTTTTTGGGTTTCAAACAGCAAAAAGGGGGaa    <  1:471667/35‑1 (MQ=255)
                                ggATTTTTTGGGTTTCAAACAGCAAAAAGGGGGaa    >  1:4632770/1‑35 (MQ=255)
                                 gATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAAt   <  1:18822353/35‑1 (MQ=255)
                                 gATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAAt   <  1:2450615/35‑1 (MQ=255)
                                  aTTTTTTGGGTTTCAAACAGCAAAAATGGGGAAtt  >  1:8853728/1‑35 (MQ=255)
                                  aTTTTTTGGGTTTCAAACAGCAAAAAGGGGGAAtt  >  1:1339743/1‑35 (MQ=255)
                                  aTTTTTTGGGTTTCAAACAGCAAAAAGGGGGAAtt  >  1:1357766/1‑35 (MQ=255)
                                  |                                  
TGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATT  >  REL606/327407‑327475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.