New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 370831 =66 (0.640)3 (0.050) 3/28 NT 8.4% intergenic (+23/‑96) phoA/psiF bacterial alkaline phosphatase/hypothetical protein
?REL606 4533970 = 27 (0.450)coding (156/1461 nt) uxuB D‑mannonate oxidoreductase, NAD‑binding

CATTAAGTCTGGTTGCTAACAGCAAAAAAACCACCCGACAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/370874‑370831
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacagcgaCTGGGGCATCTGCGAAGTTAACCTGATGCCAGGC  >  REL606/4533970‑4534003
                                                                              
CATTAAGTCTGGTTGCTAACAGCAAAAAAACCACC                                             >  1:537358/1‑35
CATTAAGTCTGGTTGCTAACAGCAAAAAAACCACC                                             >  1:12895696/1‑35
CATTAAGTCTGGTTGCTAACAGCAAAAAAACCACC                                             >  1:6471777/1‑35
CATTAAGTCTGGTTGCTAACAGCAAAAAAACCACC                                             >  1:19389246/1‑35
 ATTAAGTCTGGTTGCTAACAGCAAAAAAACCACCC                                            <  1:5181343/35‑1
 ATTAAGTCTGGTTGCTAACAGCAAAAAAACCACCC                                            >  1:3999746/1‑35
  TTAATTCTGGTTGCTAACAGCAAAAAAACCACCCG                                           >  1:333716/1‑35
  TTAAGTCTGGTTGCTAACAGCAAAAAAACCACCCG                                           >  1:8387452/1‑35
  TTAAGTCTGGTTGCTAACAGCAAAAAAACCACCCG                                           <  1:7479374/35‑1
  TTAAGTCTGGTTGCTAACAGCAAAAAAACCACCCG                                           >  1:19491651/1‑35
  TTAAGTCTGGTTGCTAACAGCAAAAAAACCACCCG                                           <  1:20277189/35‑1
   TAAGTCTGGTTGCTAACAGCAAAAAAACCACCCGA                                          >  1:20609364/1‑35
   TAAGTCTGGTTGCTAACAGCAAAAAAACCACCCGA                                          >  1:18402093/1‑35
   TAAGTCTGGTTGCTAACAGCAAAAAAACCACCCGA                                          <  1:14108154/35‑1
    aaaTCTGGTTGCTAACAGCAAAAAAACCACCCGAC                                         <  1:12594384/32‑1
    AAGTCTGGTTGCTAACAGCAAAAAAACCACCCGAC                                         >  1:11230759/1‑35
    AAGTCTGGTTGCTAACAGCAAAAAAACCACCCGAC                                         >  1:4396325/1‑35
    AAGTCTGGTTGCTAACAGCAAAAAAACCACCCGAC                                         <  1:17116738/35‑1
    AAGTCTGGTTGCTAACAGCAAAAAAACCACCCGAC                                         >  1:9740277/1‑35
     AGTCTGGTTGCTAACAGCAAAAAAACCACCCGACA                                        <  1:2175065/35‑1
     AGTCTGGTTGCTAACAGCAAAAAAACCACCCGACA                                        >  1:18686072/1‑35
     AGTCTGGTTGCTAACAGCAAAAAAACCACCCGACA                                        <  1:17770038/35‑1
     AGTCTGGTTGCTAACAGCAAAAAAACCACCCGACA                                        <  1:794875/35‑1
     AGTCTGGTTGCTAACAGCAAAAAAACCACCCGACA                                        <  1:9649292/35‑1
     AGTCTGGTTGCTAACAGCAAAAAAACCACCCGACA                                        <  1:9497329/35‑1
     AGTCTGGTTGCTAACAGCAAAAAAACCACCCGACA                                        <  1:8901480/35‑1
      GTCTGGTTGCTAACAGCAAAAAAACCACCCGACAG                                       <  1:1657994/35‑1
      GTCTGGTTGCTAACAGCAAAAAAACCACCCGACAG                                       <  1:13640011/35‑1
      GTCTGGTTGCTAACAGCAAAAAAACCACACGACAG                                       <  1:15284493/35‑1
        CTGGTTGCTAACAGCAAAAAAACCACCCGACAGCG                                     >  1:18366350/1‑35
        CTGGTTGCTAACAGCAAAAAAACCACCCGACAGCG                                     >  1:12805312/1‑35
         TGGTTGCTAACAGCAAAAAAACCACCCGACAGCGA                                    >  1:14251567/1‑35
         TGGTTGCTAACAGCAAAAAAACCACCCGACAGCGA                                    >  1:15897867/1‑35
         TGGTTGCTAACAGCAAAAAAACCACCCGACAGCGA                                    >  1:12095561/1‑35
                          AAAACCCCCCGACAGCGACTGGGGCATCTGCGAAG                   <  1:11477547/35‑1
                           AAACCCCCCGACAGCGACTGGGGCATCTGCGAAGT                  <  1:8101715/35‑1
                            AACCCCCCGACAGCGACTGGGGCATCTGCGAAGTT                 <  1:11891280/35‑1
                              cccCCCGACAGCGACTGGGGCATCTGCGAAGTTAA               <  1:16723651/32‑1
                               ccCCCGACAGCGACTGGGGCATCTGCGAAGTTAAC              <  1:5421707/33‑1
                               ccCCCGACAGCGACTGGGGCATCTGCGAAGTTAAC              <  1:11621065/33‑1
                               ccCCCGACAGCGACTGGGGCATCTGCGAAGTTAAC              <  1:17031703/33‑1
                               ccCCCGACAGCGACTGGGGCATCTGCGAAGTTAAC              <  1:1338585/33‑1
                                cCCCGACAGCGACTGGGGCATCTGCGAAGTTAACC             <  1:5892746/34‑1
                                cCCCGACAGCGACTGGGGCATCTGCGAAGTTAACC             <  1:7355381/34‑1
                                cCCCGACAGCGACTGGGGCATCTGCGAAGTTAACC             <  1:3015760/34‑1
                                 CCCGACAGCGACTGGGGCATCTGCGAAGTTAATCT            <  1:4076519/35‑1
                                  caGACAGCGACTGGGGCATCTGCGAAGTTAACCTG           <  1:7887687/33‑1
                                  CCGCCAGCGACTGGGGCATCTGCGAAGTTAACCTG           <  1:2040954/35‑1
                                  CCGACAGCGACTGGGGCATCTGCGAAGTTAACCTG           <  1:13641741/35‑1
                                  CCGACAGCGACTGGGGCATCTGCGAAGTTAACCTG           >  1:6139652/1‑35
                                  CCGACAGCGACTGGGGCATCTGCGAAGTTAACCTG           <  1:6427595/35‑1
                                  CCGACAGCGACTGGGGCATCTGCGAAGTTAACCTG           <  1:283572/35‑1
                                  CCGACAGCGACTGGGGCATCTGCGAAGTTAACCTG           >  1:18616039/1‑35
                                   cgcCAGCGACTGGGGCATCTGCGAAGTTAACCTGA          <  1:6750503/32‑1
                                   CGACAGCGACTGGGGCATCTGCGAAGTTAACCTGA          <  1:9071574/35‑1
                                   CGACAGCGACTGGGGCATCTGCGAAGTTAACCTGA          >  1:9629643/1‑35
                                   CGACAGCGACTGGGGCATCTGCGAAGTTAACCTGA          >  1:11068150/1‑35
                                   CGACAGCGACTGGGGCATCTGCGAAGTTAACCTGA          >  1:8737902/1‑35
                                   CGACAGCGACTGGGGCATCTGCGAAGTTAACCTGA          >  1:10462819/1‑35
                                    GACAGCGGCTGGGGCATCTGCGAAGTTAACCTGAT         <  1:5813243/35‑1
                                    GACAGCGACTGGGGCATCTGCGAAGTTAACCTGAT         <  1:17276307/35‑1
                                    GACAGCGACTGGGGCATCTGCGAAGTTAACCTGAT         <  1:6979392/35‑1
                                    GACAGCGACTGGGGCATCTGCGAAGTTAACCTGAT         <  1:7061161/35‑1
                                    GACAGCGACTGGGGCATCTGCGAAGTTAACCTGAT         <  1:19483399/35‑1
                                     ACAGCGACTGGGGCATCTGCGAAGTTAACCTGATG        >  1:16026546/1‑35
                                     ACAGCGACTGGGGCATCTGCGAAGTTAACCTGATG        >  1:18577186/1‑35
                                      CAGCGACTGGGGCATCTGCGAAGTTGACCTGATGC       >  1:17194130/1‑35
                                      CAGCGACTGGGGCATCTGCGAAGTTAACCTGATGC       <  1:6167700/35‑1
                                      CAGCGACTGGGGCATCTGCGAAGTTAACCTGATGC       <  1:10113770/35‑1
                                      CAGCGACTGGGGCATCTGCGAAGTTAACCTGATGC       >  1:10964908/1‑35
                                       AGCGACTGGGGCATCTGCGAAGTTAACCTGATGCC      >  1:11755400/1‑35
                                       AGCGACTGGGGCATCTGCGAAGTTAACCTGATGCC      >  1:2843641/1‑35
                                       AGCGACTGGGGCATCTGCGAAGTTAACCTGATGCC      >  1:14308570/1‑35
                                       AGCGACTGGGGCATCTGCGAAGTTAACCTGATGCC      >  1:16682704/1‑35
                                        GCGACTGGGGCATCTGCGAAGTTAACCTGATGCCA     <  1:4716444/35‑1
                                        GCGACTGGGGCATCTGCGAAGTTAACCTGATGCCA     <  1:3655244/35‑1
                                        GCGACTGGGGCATCTGCGAAGTTAACCTGATGCCA     >  1:20208747/1‑35
                                        GCGACTGGGGCATCTGCGAAGTTAACCTGATGCCA     <  1:19236408/35‑1
                                         CGACTGGGGCATCTGCGAAGTTAACGTGATGCCAG    <  1:5096554/35‑1
                                         CGACTGGGGCATCTGCGAAGTTAACCTGATGCCAG    <  1:9762324/35‑1
                                         CGACTGGGGCATCTGCGAAGTTAACCTGATGCCAG    <  1:16794470/35‑1
                                         CGACTGGGGCATCTGCGAAGTTAACCTGATGCCAG    <  1:5519072/35‑1
                                          GACTGGGGCATCTGCGAAGTTAACCTGATGCCAGG   <  1:17902915/35‑1
                                          GACTGGGGCATCTGCGAAGTTAACCTGATGCCAGG   >  1:18919941/1‑35
                                          GACTGGGGCATCTGCGAAGTTAACCTGATGCCAGG   >  1:7949074/1‑35
                                          GACTGGGGCATCTGCGAAGTTAACCTGATGCCAGG   <  1:20540004/35‑1
                                          GACTGGGGCATCTGCGAAGTTAACCTGATGCCAGG   >  1:12566317/1‑35
                                          GACTGGGGCATCTGCGAAGTTAACCTGATGCCAGG   >  1:2948459/1‑35
                                          GACTGGGGCATCTGCGAAGTTAACCTGATGCCAGG   >  1:116778/1‑35
                                          GACTGGGGCATCTGCGAAGTTAACCTGATGCCAGG   >  1:5329754/1‑35
                                           ACTGGGGCATCTGCGAAGTTAACCTGATGCCAGGC  >  1:6832221/1‑35
                                           ACTGGGGCATCTGCGAAGTTAACCTGATGCCAGGC  >  1:11900254/1‑35
                                           ACTGGGGCATCTGCGAAGTTAACCTGATGCCAGGC  >  1:9586683/1‑35
                                           ACTGGGGCATCTGCGAAGTTAACCTGATGCCAGGC  <  1:11161269/35‑1
                                           ACTGGGGCATCTGCGAAGTTAACCTGATGCCAGGC  >  1:5373693/1‑35
                                                                              
CATTAAGTCTGGTTGCTAACAGCAAAAAAACCACCCGACAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/370874‑370831
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacagcgaCTGGGGCATCTGCGAAGTTAACCTGATGCCAGGC  >  REL606/4533970‑4534003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.