New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1332936 =97 (0.940)12 (0.150) 5/38 NT 15.3% coding (710/975 nt) cysB DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding
?REL606 = 2871320 56 (0.690)coding (101/1032 nt) galR DNA‑binding transcriptional repressor

Only 100 of 178 total aligned reads displayed.

GATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTG  >  REL606/1332902‑1332970
                                  |                                  
gATGCTGACGTCATTAAAACTTACGTCCGGTTAgg                                    >  1:16092672/1‑35 (MQ=255)
gATGCTGACGTCATTAAAACTTACGTCCGGTTAgg                                    >  1:5247026/1‑35 (MQ=255)
gATGCTGACGTCATTAAAACTTACGTCCGGTTAgg                                    <  1:5674263/35‑1 (MQ=255)
ataattcacctaaagccagtgaagcttcccggctg                                    <  1:14392096‑M1/1‑1 (MQ=255)
ataattcacctaaagccagtgaagcttcccggctg                                    >  1:12315878‑M1/35‑35 (MQ=255)
 taattcacctaaagccagtgaagcttccctgctgg                                   <  1:9341445‑M1/2‑1 (MQ=255)
 aTGCTGACGTCATTAAAACTTACGTCCGGTTAggg                                   >  1:1967042/1‑35 (MQ=255)
 aTGCTGACGTCATTAAAACTTACGTCCGGTTAggg                                   >  1:11540109/1‑35 (MQ=255)
  tGCTGACGTCATTAAAACTTACGTCCGGCTAGGGc                                  <  1:7593720/35‑1 (MQ=255)
  aattcacctaaagccagtgaagcttcccggctggc                                  <  1:3531552‑M1/3‑1 (MQ=255)
  aattcacctaaagccagtgaagcttcccggctggc                                  <  1:5615524‑M1/3‑1 (MQ=255)
   attcacctaaagccagtgaagcttcccggctggct                                 >  1:19074617‑M1/32‑35 (MQ=255)
   attcacctaaagccagtgaagcttcccggctggct                                 >  1:19404827‑M1/32‑35 (MQ=255)
   attcacctaaagccagtgaagcttcccggctggct                                 <  1:18758958‑M1/4‑1 (MQ=255)
    ttcacctaaagccagtgaagcttcccggcttgctg                                <  1:5957547‑M1/5‑1 (MQ=255)
    ttcacctaaagccagtgaagcttcccggctggctg                                <  1:17686168‑M1/5‑1 (MQ=255)
     tcacctaaagccattgaagcttcccggctggctgg                               <  1:2008120‑M1/6‑1 (MQ=255)
     tGACGTCATTAAAACTTACGTCCGGTTAGGGCTgg                               <  1:20403649/35‑1 (MQ=255)
     tGACGTCATTAAAACTTACGTCCGGTTAGGGCTgg                               <  1:3689766/35‑1 (MQ=255)
      taCGTCATTAAAACTTACGTCCGGTTAGGGCTggg                              >  1:15612452/2‑35 (MQ=255)
      gACGTCATTAAAACTTACGTCCGGTTAGGGCTggg                              <  1:1027446/35‑1 (MQ=255)
      gACGTCATTAAAACTTACGTCCGGTTAGGGCTggg                              >  1:18663052/1‑35 (MQ=255)
      gACGTCATTAAAACTTACGTCCGGTTAGGGCTggg                              <  1:17391270/35‑1 (MQ=255)
      gACGTCATTAAAACTTACGTCCGGTTAGGGCTggg                              >  1:5130504/1‑35 (MQ=255)
      gACGTCATTAAAACTTACGTCCGGTTAGGGCTggg                              <  1:15057825/35‑1 (MQ=255)
      gACGTCATTAAAACTTACGTCCGGTTAGGGCTggg                              <  1:9357143/35‑1 (MQ=255)
       aCGTCATTAAAACTTACGTCCGGTTAGGGCTgggg                             <  1:1068059/35‑1 (MQ=255)
       aCGTCATTAAAACTTACGTCCGGTTAGGGCTgggg                             <  1:13609902/35‑1 (MQ=255)
       aCGTCATTAAAACTTACGTCCGGTTAGGGCTgggg                             <  1:3359641/35‑1 (MQ=255)
        cctaaagccagtgaagcttcccggctGGCTggggg                            <  1:11569582‑M1/9‑1 (MQ=255)
        cGTCATTAAAACTTACGTCCGGTTAGGGCTggggg                            >  1:1465170/1‑35 (MQ=255)
        cGTCATTAAAACTTACGTCCGGTTAGGGCTggggg                            <  1:5996015/35‑1 (MQ=255)
         gTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGt                           >  1:10956779/1‑35 (MQ=255)
         gTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGt                           >  1:17184590/1‑35 (MQ=255)
         ctaaagccagtgaagcttcccggctGGCtgggggg                           <  1:15244839‑M1/10‑2 (MQ=255)
         ctaaagccagtgaagcttcccggctGGCtggggga                           <  1:20190005‑M1/10‑2 (MQ=255)
          taaagccagtgaagcttcccggctGGCTGGGGGTa                          <  1:20320243‑M1/11‑1 (MQ=255)
          taaagccagtgaagcttcccggctGGCTGGGGGTa                          <  1:10503289‑M1/11‑1 (MQ=255)
          tCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTa                          >  1:16650861/1‑35 (MQ=255)
          tCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTa                          >  1:3030054/1‑35 (MQ=255)
           cATTAAAACTTACGTCCGGTTAGGGCTTGGGGTAg                         >  1:19994947/1‑35 (MQ=255)
           cATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAg                         >  1:2854425/1‑35 (MQ=255)
           cATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAg                         <  1:10137929/35‑1 (MQ=255)
           aaagccagtgaagcttcccggctGGCTGGGCGTAg                         <  1:152075‑M1/12‑1 (MQ=255)
            aagccagtgaagcttcccggctGGCTGGGGGTagt                        <  1:1416064‑M1/13‑2 (MQ=255)
            aagccagtgaagcttcccggctGGCTGGGGGTagt                        <  1:8654104‑M1/13‑2 (MQ=255)
            aagccagtgaagcttcccggctGGCTGGGGGGAgg                        <  1:13074805‑M1/13‑1 (MQ=255)
            aTTAAAACTTACGTCCTGTTAGGGCTGGGGGTAgg                        >  1:2399943/1‑35 (MQ=255)
            aTTAAAACTTACGTCCTGTTAGGGCTGGGGGTAgg                        >  1:9714330/1‑35 (MQ=255)
            aTTAAAACTTACGTCCGGTTAGGGCTGGGGGTAgg                        <  1:11344020/35‑1 (MQ=255)
            aTTAAAACTTACGTCCGGTTAGGGCTGGGGGTAgg                        >  1:8265184/1‑35 (MQ=255)
            aTTAAAACTTACGTCCGGTTAGGGCTGGGGGTAgg                        <  1:4980999/35‑1 (MQ=255)
             ttAAAACTTACGTCCGGTTAGGGCTGGGGGTAggg                       >  1:10023211/1‑35 (MQ=255)
             ttAAAACTTACGTCCGGTTAGGGCTGGGGGTAggg                       >  1:16758360/1‑35 (MQ=255)
             agccagtgaagcttcccggctGGCTGGGGGTAggg                       <  1:9313639‑M1/14‑1 (MQ=255)
             agccagtgaagcttcccggctGGCTGGGGGTAggg                       <  1:1480182‑M1/14‑1 (MQ=255)
              tAAAACTTACGTCCGGTTAGGGCTGGGGGTAgggg                      >  1:9543942/1‑35 (MQ=255)
              tAAAACTTACGTCCGGTTAGGGCTGGGGGTAgggg                      <  1:8273775/35‑1 (MQ=255)
              tAAAACTTACGTCCGGTTAGGGCTGGGGGTAgggg                      >  1:4855188/1‑35 (MQ=255)
              tAAAACTTACGTCCGGTTAGGGCTGGGGGTAgggg                      <  1:4553757/35‑1 (MQ=255)
               aaaaCTTACGTCCGGTTAGGGCTGGGGGTAGGGGt                     <  1:19554402/35‑1 (MQ=255)
               aaaaCTTACGTCCGGTTAGGGCTGGGGGTAGGGGt                     <  1:12641988/35‑1 (MQ=255)
                aaaCTTACGTCCGGTTAGGGCTGGGGGTAGGGGTc                    >  1:1881379/1‑35 (MQ=255)
                 aaCTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCa                   >  1:9353742/1‑35 (MQ=255)
                  aCTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCAt                  <  1:11281867/35‑1 (MQ=255)
                  aCTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCAt                  <  1:5325217/35‑1 (MQ=255)
                   cTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCAtt                 <  1:18205970/35‑1 (MQ=255)
                   cTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCAtt                 >  1:1781681/1‑35 (MQ=255)
                   cTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCAtt                 <  1:11194352/35‑1 (MQ=255)
                   cTTACGTCCGGTTAGGGCTGGGGGGAGGGGTCAtt                 >  1:17346986/1‑35 (MQ=255)
                   cTTACGTCCGGTTAGGGCTGGGCGGAGGGGGCAtt                 >  1:5897375/1‑35 (MQ=25)
                    ttACGTCCGGTTAGTGCTGGGGGTAGGGGTCATTg                >  1:10862315/1‑35 (MQ=255)
                     tACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGc               <  1:7000106/35‑1 (MQ=255)
                      aCGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGcc              >  1:18927786/1‑35 (MQ=255)
                       cGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCa             >  1:7893127/1‑35 (MQ=255)
                       cGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCa             <  1:3117267/35‑1 (MQ=255)
                       cGTCCGGTTAGGGATGGGGGTAGGGGTCATTGCCa             <  1:13466632/35‑1 (MQ=255)
                        gTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAg            >  1:17972294/1‑35 (MQ=255)
                         tCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGc           <  1:8961208/35‑1 (MQ=255)
                         tCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGc           >  1:468607/1‑35 (MQ=255)
                         tCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGc           <  1:1205969/35‑1 (MQ=255)
                          nngnTNNGGGCTGGGGGTAGGGGTCATTGCCAGCa          <  1:2423871/33‑1 (MQ=38)
                          ccGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCa          <  1:10691967/35‑1 (MQ=255)
                          ccGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCa          <  1:7450996/35‑1 (MQ=255)
                           cGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCAt         >  1:16258656/1‑35 (MQ=255)
                           cGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCAt         >  1:6857470/1‑35 (MQ=255)
                           cGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCAt         <  1:5439111/35‑1 (MQ=255)
                           cGGTTAGGGATGGGGGTAGGGGTCATTGCAAGCAt         <  1:11508388/35‑1 (MQ=38)
                            ggTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATg        >  1:17247166/1‑35 (MQ=255)
                             gTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATgg       >  1:2902516/1‑35 (MQ=255)
                              ttAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGc      >  1:5954240/1‑35 (MQ=255)
                               tAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCg     <  1:13343106/35‑1 (MQ=255)
                               tAGGGCTGGGGGTAGGGGTCATTGCAAGCATGGCg     <  1:8056033/35‑1 (MQ=255)
                               tAGGGCTCGGGGTAGGGGTCATTGCCAGCATGGCg     >  1:19845897/1‑35 (MQ=255)
                                aGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCgg    >  1:12793965/1‑35 (MQ=255)
                                aGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCgg    >  1:10718655/1‑35 (MQ=255)
                                  GGCTGGGGGTAGGGGTCATTGCCAGCATGgcgggg  <  1:14003197‑M1/35‑3 (MQ=255)
                                  GGCTGGGGGTAGGGGTCATTGCCAGCATGgcgggg  <  1:12923166‑M1/35‑3 (MQ=255)
                                  GGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTg  >  1:14878969‑M1/1‑35 (MQ=255)
                                  GGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTg  >  1:16590535‑M1/1‑35 (MQ=255)
                                  |                                  
GATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTG  >  REL606/1332902‑1332970

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.