New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1534318 =71 (0.690)12 (0.150) 4/38 NT 24.9% coding (550/1023 nt) yddR D‑ala‑D‑ala transporter subunit
?REL606 = 2036370 16 (0.200)coding (589/1113 nt) wbbC putative glycosyltransferase WbbC

Only 100 of 124 total aligned reads displayed.

TCACCGTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATCCAGCCAG  >  REL606/1534284‑1534352
                                  |                                  
tCACCGTTGCCTTCAAGCAGCGCATCGAGCAGATa                                    >  1:4190406/1‑35 (MQ=255)
tCACCGTTGCCTTCAAGCAGCGCATCGAGCAGATa                                    >  1:10821208/1‑35 (MQ=255)
tCACCGTTGCCTTCAAGCAGCGCATCGAGCAGATa                                    >  1:6089614/1‑35 (MQ=255)
gtttatcttcatgcaaagcacccaccgagaaaaaa                                    <  1:17396908‑M1/1‑1 (MQ=255)
 cACCGTTGCCTTCAAGCAGCGCATCGAGCAGATaa                                   <  1:18574973/35‑1 (MQ=255)
 cACCGTTGCCTTCAAGCAGCGCATCGAGCAGATaa                                   <  1:8682264/35‑1 (MQ=255)
 cACCGTTGCCTTCAAGCAGCGCATCGAGCAGATaa                                   >  1:1119188/1‑35 (MQ=255)
  aCCGTTGCCTTCAAGCAGCGCATCGAGCAGATaaa                                  >  1:1168403/1‑35 (MQ=255)
   ccGTTGCCTTCAAGCAGCGCATCGAGCAGATaaaa                                 <  1:8724956/35‑1 (MQ=255)
   ccGTTGCCTTCAAGCAGCGCATCGAGCAGATaaaa                                 <  1:16556964/35‑1 (MQ=255)
    cGTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAg                                >  1:13989182/1‑35 (MQ=255)
    cGTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAg                                >  1:12277326/1‑35 (MQ=255)
    cGTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAg                                >  1:8890214/1‑35 (MQ=255)
    cGTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAg                                >  1:1504913/1‑35 (MQ=255)
     gTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGc                               >  1:11464603/1‑35 (MQ=255)
     gTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGc                               <  1:14988503/35‑1 (MQ=255)
     gTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGc                               <  1:11944664/35‑1 (MQ=255)
     gTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGc                               >  1:1048451/1‑35 (MQ=255)
     gTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGc                               <  1:19541597/35‑1 (MQ=255)
      ttGCCTTCAAGCAGCGCATCGAGCAGATAAAAGcc                              <  1:12669773/35‑1 (MQ=255)
      ttGCCTTCAAGCAGCGCATCGAGCAGATAAAAGcc                              >  1:5712544/1‑35 (MQ=255)
      ttGCCTTCAAGCAGCGCATCGAGCAGATAAAAGcc                              >  1:1357595/1‑35 (MQ=255)
      ttGCCTTCAAGCAGCGCATCGAGCAGATAAAAGcc                              <  1:3275847/35‑1 (MQ=255)
      ttGCCTTCAAGCAGCGCATCGAGCAGATAAAAGcc                              <  1:559687/35‑1 (MQ=255)
       tGCCTTCAAGCAGCGCATCGAGCAGATAAAAGCCg                             >  1:5189886/1‑35 (MQ=255)
        gCCTTCAAGCAGCGCATCGAGCAGATAAAAGCCgg                            >  1:16271513/1‑35 (MQ=255)
        gCCTTCAAGCAGCGCATCGAGCAGATAAAAGCCgg                            <  1:16798210/35‑1 (MQ=255)
        gCCTTCAAGCAGCGCATCGAGCAGATAAAAGCCgg                            <  1:252084/35‑1 (MQ=255)
         ccTTCAAGCAGCGCATCGAGCATATAAAAGCCGGt                           >  1:8388437/1‑35 (MQ=255)
         ccTTCAAGCAGCGCATCGAGCATATAAAAGCCGGt                           >  1:7549092/1‑35 (MQ=255)
          cTTCAAGCAGCGCATCGAGCAGATAAAAGCCGGTa                          >  1:20354011/1‑35 (MQ=255)
           ttCAAGCAGCGCATCGAGCAGATAAAAGCCGGTaa                         >  1:19437405/1‑35 (MQ=255)
             cAAGCAGCGCATCGAGCAGATAAAAGCCGGTAACg                       >  1:16540015/1‑35 (MQ=255)
             cAAGCAGCGCATCGAGCAGATAAAAGCCGGTAACg                       >  1:10146965/1‑35 (MQ=255)
             cAAGCAGCGCATCGAGCAGATAAAAGCCGGTAACg                       >  1:18374477/1‑35 (MQ=255)
              aaGCAGCGCATCGAGCAGATAAAAGCCGGTAACGt                      >  1:8249816/1‑35 (MQ=255)
              aaGCAGCGCATCGAGCAGATAAAAGCCGGTAACGt                      >  1:4047999/1‑35 (MQ=255)
               agcagcGCATCGAGCAGATAAAAGCCGGTAACTTg                     >  1:6360808/1‑35 (MQ=255)
               agcagcGCATCGAGCAGATAAAAGCCGGTAACGTg                     >  1:14606907/1‑35 (MQ=255)
               agcagcGCATCGAGCAGATAAAAGCCGGTAACGTg                     >  1:5136230/1‑35 (MQ=255)
               agcagcGCATCGAGCAGATAAAAGCCGGTAACGTg                     >  1:19448764/1‑35 (MQ=255)
               agcagcGCATCGAGCAGATAAAAGCAGGTAACGTg                     <  1:7625161/35‑1 (MQ=255)
                 cagcGCATCGAGCAGATAAAAGCCGGTAACGTGCg                   >  1:595663/1‑35 (MQ=255)
                 cagcGCATCGAGCAGATAAAAGCCGGTAACGTGCg                   >  1:14122776/1‑35 (MQ=255)
                  ggcgcATGGAGAAAAAAAAAGCCGGTAACGTGCGt                  <  1:12744973/34‑1 (MQ=12)
                  agcGCATCGAGCAGATAAAAGCCGGTAACGTGCGt                  >  1:17247867/1‑35 (MQ=255)
                  agcGCATCGAGCAGATAAAAGCCGGTAACGTGCGt                  >  1:4921042/1‑35 (MQ=255)
                  agcGCATCGAGCAGATAAAAGCCGGTAACGTGCGt                  >  1:11361002/1‑35 (MQ=255)
                   gcgcATCGAGCAGATAAAAGCCGGTAACGTGCGtt                 >  1:6092542/1‑35 (MQ=255)
                   gcgcATCGAGCAGATAAAAGCCGGTAACGTGCGtt                 >  1:15396349/1‑35 (MQ=255)
                     gcagcgagaaaaaAAAAGCCGGTAACGTGCGTtgg               >  1:7319422‑M1/14‑35 (MQ=255)
                     gcaccaagaaaaaAAAAGCCGGTAACGTGCGTtgg               >  1:14878415‑M1/14‑35 (MQ=255)
                     gcaacgagaaaaaAAAAGCCGGTAACGTGCGTtgg               >  1:7796676‑M1/14‑35 (MQ=255)
                     gcATCGAGCAGATAAAAGCCGGTAACGTGCGTtgg               >  1:18528426/1‑35 (MQ=255)
                     gcATCGAGCAGATAAAAGCCGGTAACGTGCGTtgg               >  1:5186664/1‑35 (MQ=255)
                     gcATCGAGCAGATAAAAGCCGGTAACGTGCGTtgg               >  1:11330444/1‑35 (MQ=255)
                      cATCGAGCAGATAAAAGCCGGTAACGTGCGTtggt              >  1:20482365/1‑35 (MQ=255)
                       accgaaaaaaaAAAAGCCGGTAACGTGCGTtggtg             >  1:3454113‑M1/12‑35 (MQ=255)
                       aTCGAGCAGATAAAAGCCGGTAACGTGCGTtggtg             >  1:14073414/1‑35 (MQ=255)
                        tCGAGCAGATAAAAGCCGGTTACGTGCGTtggtgg            <  1:1489322/35‑1 (MQ=255)
                        tCGAGCAGATAAAAGCCGGTAACGTGCGTtggtgg            >  1:15517431/1‑35 (MQ=255)
                        tCGAGCAGATAAAAGCCGGTAACGTGCGTtggtgg            >  1:13318026/1‑35 (MQ=255)
                        gcgaaaaaaaAAAAGCCGGTAACGTGCGTtggtgg            >  1:16611306‑M1/11‑35 (MQ=255)
                         ggagaaaaaAAAAGCCGGTAACGTGCGTTGGTGGa           >  1:13390894‑M1/10‑35 (MQ=255)
                         cgagaaaaaAAAAGCCGGTAACGTGCGTTGGTGGa           >  1:8514367‑M1/10‑35 (MQ=255)
                         cGAGCAGATAAAAGCCGGTAACGTGCGTTGGTGGa           >  1:3237994/1‑35 (MQ=255)
                         cGAGCAGATAAAAGCCGGTAACGTGCGTTGGTGGa           >  1:19220256/1‑35 (MQ=255)
                         cGAGCAGATAAAAGCCGGTAACGTGCGTTGGTGGa           >  1:13503307/1‑35 (MQ=255)
                         cGAGCAGATAAAAGACGGTAACGTGCGTTGGTGGa           <  1:18535640/35‑1 (MQ=255)
                          gAGCAGATAAAAGCCGGTAACGGGCGTTGGTGGAt          >  1:18440963/1‑35 (MQ=255)
                          aagaaaaaAAAAGCCGGTAACGTGCGTTGGTGGAt          >  1:5416206‑M1/9‑35 (MQ=255)
                           agaaaaaAAAAGCCGGTAACGTGCGTTGGTGGATc         >  1:5664242‑M1/8‑35 (MQ=255)
                           agaaaaaAAAAGCCGGTAACGTGCGTTGGTGGATc         >  1:14162110‑M1/8‑35 (MQ=255)
                           aGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATc         >  1:7574045/1‑35 (MQ=255)
                           aGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATc         >  1:9577740/1‑35 (MQ=255)
                           aGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATc         >  1:11210317/1‑35 (MQ=255)
                           aGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATc         >  1:14670310/1‑35 (MQ=255)
                           aGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATc         >  1:19880852/1‑35 (MQ=255)
                           aGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATc         >  1:20537801/1‑35 (MQ=255)
                            gaaaaaAAAAGCCGGTAACGTGCGTTGGTGGATcc        >  1:18963262‑M1/7‑35 (MQ=255)
                            gCAGATAAAAGCCGGTAACGTGCGTTTGTGGATcc        >  1:11306767/1‑35 (MQ=255)
                             cAGATAAAAGCCGGTAACGTGCGTTGGTGGATcca       >  1:14188385/1‑35 (MQ=255)
                             cAGATAAAAGCCGGTAACGTGCGTTGGTGGATcca       >  1:14680730/1‑35 (MQ=255)
                             cAGATAAAAGCCGGTAACGTGCGTTGGTGGATcca       >  1:4540429/1‑35 (MQ=255)
                             cAGATAAAAGCCGGTAACGTGCGTTGGTGGATcca       >  1:11340583/1‑35 (MQ=255)
                             cAGATAAAAGCCGGTAACGTGCGTTGGTGGATaca       >  1:10413198/1‑35 (MQ=255)
                              aaaaAAAAGCCGGTAACGTGCGTTGGTGGATccag      >  1:8961321‑M1/5‑35 (MQ=255)
                              aaaaAAAAGCCGGTAACGTGCGTTGGTGGATccag      >  1:9761052‑M1/5‑35 (MQ=255)
                              aGATAAAAGCCGGTAACGTGCGTTGGTGGATccag      >  1:4552331/1‑35 (MQ=255)
                               gATAAAAGCCGGTAACGTGCGTTGGTGGATccagc     >  1:9611097/1‑35 (MQ=255)
                               gATAAAAGCCGGTAACGTGCGTTGGTGGATccagc     >  1:9675731/1‑35 (MQ=255)
                               aaaAAAAGCCGGTAACGTGCGTTGGTGGATccagc     >  1:12339290‑M1/4‑35 (MQ=255)
                                aaAAAAGCCGGTAACGTGCGTTGGTGGATccagcc    >  1:8274339‑M1/3‑35 (MQ=255)
                                aTAAAAGCCGGTAACGTGCGTTGGTGGATccagcc    >  1:1954653/1‑35 (MQ=255)
                                 aAAAAGCCGGTAACGTGCGTTGGTGGATccagcca   >  1:15980558‑M1/2‑35 (MQ=255)
                                 aAAAAGCCGGTAACGTGCGTTGGTGGATccagcca   >  1:11059650‑M1/2‑35 (MQ=255)
                                  AAAAGCCGGTAACGTGCGTTGGTGGATccagccag  >  1:14934902‑M1/1‑35 (MQ=255)
                                  AAAAGCCGGTAACGTGCGTTGGTGGATccagccag  <  1:11678990‑M1/35‑1 (MQ=255)
                                  AAAAGCCGGTAACGTGCGTTGGTGGATccagccag  <  1:11124186‑M1/35‑1 (MQ=255)
                                  AAAAGCCGGTAACGTGCGTTGGTGGATccagccag  >  1:10111997‑M1/1‑35 (MQ=255)
                                  |                                  
TCACCGTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATCCAGCCAG  >  REL606/1534284‑1534352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.