New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3517490 | 69 (0.670) | 13 (0.130) | 8/48 | NT | 14.7% | coding (10/1743 nt) | ggt | gamma‑glutamyltranspeptidase periplasmic precursor |
? | REL606 | = 4266659 | 82 (0.800) | intergenic (‑355/‑38) | acs/nrfA | acetyl‑coenzyme A synthetase/nitrite reductase, formate‑dependent, cytochrome |
GAGCAGCAATGGCCACCCGGCGTAAAAACGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3517457‑3517490 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTTTTTATTGTTTTT < REL606/4266659‑4266644 GAGCAGCAATGGCCACCCGGCGTAAAAACGTCGGG > 1:18039722/1‑35 AGCAGCAATGGCCACCCGGCGTAAAAACGTCGGGG > 1:18957227/1‑35 AGCAGCAATGGCCACCCGGCGTAAAAACGTCGGGG > 1:16473555/1‑35 GCAGCAATGGCCACCCGGCGTAAAAACGTCGGGGT > 1:2775594/1‑35 GCAGCAATGGCCACCCGGCGTAAAAACGTCGGGGT > 1:20453676/1‑35 CAGCAATGGCCACCCGGCGTAAAAACGTCGGGGTT > 1:11883899/1‑35 AGCAATGGCCACCCGGCGTAAAAACGTCGGGGTTT > 1:18678355/1‑35 AGCAATGGCCACCCGGCGTAAAAACGTCGGGGGTT > 1:17697441/1‑35 AGCAATGGCCACCCGGCGTAAAAACGTCGGGGGTT > 1:2412569/1‑35 AGCAATGGCCACCCGGCGTAAAAACGTCGGGGGTT > 1:11918581/1‑35 GCAATGGCCACCCGGCGTAAAAACGTCGGGGGTTT > 1:18674071/1‑35 CAATGGCCACCCGGCGTAAAAACGTCGGGGTTTTT > 1:8605776/1‑35 CAATGGCCACCCGGCGTAAAAACGTCGGGGGTTTT > 1:15700351/1‑35 CAATGGCCACCCGGCGTAAAAACGTCGGGGGTTTT > 1:12190113/1‑35 TGGCCACCCGGCGTAAAAACGTCGGGTTTTTTATT > 1:9170726/1‑35 TGGCCACCCGGCGTAAAAACGTCGGGGTTTTTttc > 1:2285395/1‑32 TGGCCACCCGGCGTAAAAACGTCGGGGTTTTTTTT > 1:15193966/1‑35 GGCCACCCGGCGTAAAAACGTCGGGGGTTTTATTG > 1:4371276/1‑35 CCACCCGGCGTAAAAACGTCGGGGTTTTTTTTGTT > 1:17312233/1‑35 CCACCCGGCGTAAAAACGTCGGGGTTTTTATCGTT > 1:4209508/1‑35 CACCCGGCGTAAAAACGTCGGGGTTTTCATTGTTT > 1:14343073/1‑35 ACCCGGCGTAAAAACGTCGGGGTTTTTATTGTTTT > 1:4880736/1‑35 CCCGGCGTAAAAACGTCGGGGTTTTTATTGTTTTT > 1:8887032/1‑35 GAGCAGCAATGGCCACCCGGCGTAAAAACGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3517457‑3517490 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTTTTTATTGTTTTT < REL606/4266659‑4266644 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |