New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 159874160 (0.580)10 (0.100) 3/46 NT 15.9% intergenic (‑61/+28) ydfI/ydfJ predicted mannonate dehydrogenase/predicted transporter
?REL606 = 3347592 48 (0.490)coding (552/918 nt) yhdW predicted amino‑acid transporter subunit

AAGCTATATGTTTTGTTATATGAATAAAAATCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1598707‑1598741
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTCCGGTAAGACAATCCATTCAGCTGGGTTGCTT  <  REL606/3347592‑3347559
                                                                     
AAGCTATATGTTTTGTTATATGAATAAAAATCCCC                                    <  1:9893666/35‑1
AAGCTATATGTTTTGTTATATGAATAAAAATCCCC                                    >  1:9604283/1‑35
AAGCTATATGTTTTGTTATATGAATAAAAATCCCC                                    >  1:20122305/1‑35
AAGCTATATGTTTTGTTATATGAATAAAAATCCCC                                    >  1:19896564/1‑35
AAGCTATATGTTTTGTTATATGAATAAAAATCCCC                                    >  1:14789048/1‑35
                       tTAAAAAACCCCCTCCGGTAAGACAATCCATTCAG             <  1:10202061/34‑1
                       tTAAAAAACCCCCTCCGGTAAGACAATCCATTCAG             <  1:12349030/34‑1
                        TAAAAAACCCCCTCCGGTAAGACAATCCATTCAGC            <  1:15355956/35‑1
                        TAAAAAACCCCCTCCGGTAAGACAATCCATTCAGC            <  1:4884487/35‑1
                         AAAAAACCCCCTCCGGTAAGACAATCCATTCAGCT           <  1:9104984/35‑1
                         AAAAAACCCCCTCCGGTAAGACAATCCATTCAGCT           <  1:14694821/35‑1
                         AAAAAACCCCCTCCGGTAAGACAATCCATTCAGCT           <  1:16506143/35‑1
                           AAAACCCCCTCCGGTAAGACAATCCATTCAGCTGG         <  1:20260919/35‑1
                           AAAACCCCCTCCGGTAAGACAATCCATTCAGCTGG         <  1:12284684/35‑1
                           AAAACCCCCTCCGGTAAGACAATCCATTCAGCTGG         <  1:19093200/35‑1
                            aaaCCCCCTCCGGTAAGACAATCCATTCAGCTGGG        <  1:11520705/32‑1
                             aaCCCCCTCCGGTAAGACAATCCATTCAGCTGGGT       <  1:2218762/33‑1
                              ccaCCCTCCGGTAAGACAATCCATTCAGCTGGGTT      <  1:9309469/32‑1
                              cCCCCCTCCGGTAAGACAATCCATTCAGCTGGGTT      <  1:19263462/34‑1
                              aCCCCCTCCGGTAAGACAATCCATTCAGCTGGGTT      <  1:16342880/34‑1
                               CCCCCTCCGGTAAGACAATCCATTCAGCTGGGTTG     <  1:7998560/35‑1
                                 CCCTCCGGTAAGACAATCCATTCAGCTGGGTTGCT   <  1:56136/35‑1
                                 CCCTCCGGTAAGACAATCCATTCAGCTGGGTTGCT   <  1:7496982/35‑1
                                  CCTCCGGTAAGACAATCCATTCAGCTGGGTTGCTT  <  1:19589235/35‑1
                                  CCTCCGGTAAGACAATCCATTCAGCTGGGTTGCTT  >  1:5561128/1‑35
                                  CCTCCGGTAAGACAATCCATTCAGCTGGGTTGCTT  <  1:148485/35‑1
                                  CCTCCGGTAAGACAATCCATTCAGCTGGGTTGCTT  <  1:9876757/35‑1
                                                                     
AAGCTATATGTTTTGTTATATGAATAAAAATCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1598707‑1598741
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTCCGGTAAGACAATCCATTCAGCTGGGTTGCTT  <  REL606/3347592‑3347559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.