Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 16,990 | IS150 (+) +3 bp | 100% | intergenic (‑32/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 16990 = | 0 (0.000) | 81 (0.790) | 38/48 | NT | 100% | intergenic (‑32/‑498) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
* | ? | REL606 | = 16992 | 0 (0.000) | 58 (0.560) | 29/48 | NT | 100% | intergenic (‑34/‑496) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region |
Only 100 of 188 total aligned reads displayed.
CATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAT > REL606/16956‑17024 | tgtttaactgtccaactttttggggtcagtacaAc < 1:9648855‑M1/2‑1 (MQ=255) tgtttaactgtccaactttttggggtcagtacaAc < 1:1526632‑M1/2‑1 (MQ=255) tgtttaactgtccaactttttggggtcagtacaAc > 1:2065093‑M1/34‑35 (MQ=255) tgtttaactgtccaactttttggggtcagtacaAc > 1:2551389‑M1/34‑35 (MQ=255) tgtttaactgtccaactttttggggtcagtacaAc > 1:589515‑M1/34‑35 (MQ=255) atatAGGGGGCCTCGGGTTGATAGTAAAATATCAc > 1:14178275/1‑35 (MQ=255) atatAGGGGGCCTCGGGTTGATAGTAAAATATCAc < 1:3123372/35‑1 (MQ=255) tataGGGGGCCTCGGGTTGATAGTAAAATATCACt > 1:14496406/1‑35 (MQ=255) gtttaactgtccaactttttggggtcagtacaACt > 1:19284257‑M1/33‑35 (MQ=255) gtttaactgtccaactttttggggtcagtacaACt < 1:14056798‑M1/3‑1 (MQ=255) gtttaactgtcaaactttttggggtcagtacaACt > 1:15646708‑M1/33‑35 (MQ=255) tttaactgtccaactttttggggtcagtacaACTc > 1:3798717‑M1/32‑35 (MQ=255) tttaactgtccaactttttggggtcagtacaACTc > 1:6920623‑M1/32‑35 (MQ=255) tttaactgtccaactttttggggtcagtacaACTc < 1:11647322‑M1/4‑1 (MQ=255) tttaactgtccaactttttggggtcagtacaACTc < 1:17125584‑M1/4‑1 (MQ=255) ataGGGGGCCTCGGGTTGATAGTAAAATATCACTt > 1:7323851‑M1/1‑34 (MQ=255) taGGGGGCCTCGGGTTGATAGTAAAATATCACTtg < 1:4147269‑M1/35‑3 (MQ=255) taGGGGGCCTCGGGTTGATAGTAAAATATCACTtg > 1:8961776‑M1/1‑33 (MQ=255) taactgtccaactttttggggtcagtacaACTCgg > 1:2593181‑M1/30‑35 (MQ=255) taactgtccaactttttggggtcagtacaACTCgg > 1:8864062‑M1/30‑35 (MQ=255) aGGGGGCCTCGTGTTGATAGTAAAATATCACTtgt > 1:14426984‑M1/1‑32 (MQ=255) aGGGGGCCTCGGGTTGATAGTAAAATATCACTtgt > 1:17930161‑M1/1‑32 (MQ=255) actgtccaactttttggggtcagtacaACTCgggg > 1:9843746‑M1/28‑35 (MQ=255) gggCCTCGGGTTGATAGTAAAATATCACTtgtact < 1:17983665‑M1/35‑7 (MQ=255) gggCCTCGGGTTGATAGTAAAATATCACTtgtact < 1:4432378‑M1/35‑7 (MQ=255) gggCCTCGGGTTGATAGTAAAATATCACTtgtact > 1:8353596‑M1/1‑29 (MQ=255) gggCCTCGGGTTGATAGTAAAATATCACTtgtact > 1:5993962‑M1/1‑29 (MQ=255) gggCCTCGGGTTGATAGTAAAATATCACTtgtact > 1:6552350‑M1/1‑29 (MQ=255) ctgtccaactttttggggtcagtacaACTCGGGGc > 1:9542034‑M1/27‑35 (MQ=255) ctgtccaactttttggggtcagtacaACTCGGGGc < 1:10889814‑M1/9‑1 (MQ=255) ctgtccaactttttggggtcagtacaACTCGGGGc < 1:16740188‑M1/9‑1 (MQ=255) ctgtccaactttttggggtcagtacaACTCGGGGc < 1:16976552‑M1/9‑1 (MQ=255) tgtccaactttttggggtcagtacaACTCGGGGCt > 1:271521‑M1/26‑35 (MQ=255) tgtccaactttttggggtcagtacaACTCGGGGCt < 1:16010254‑M1/10‑1 (MQ=255) ggCCTCGGGTTGATAGTAAAATATCACTtgtactg > 1:17143979‑M1/1‑28 (MQ=255) gtccaactttttggggtcagtacaACTCGGGGCtt > 1:17608611‑M1/25‑35 (MQ=255) gtccaactttttggggtcagtacaACTCGGGGCtt > 1:9649708‑M1/25‑35 (MQ=255) tccaactttttggggtcagtacaACTCGGGGCttt < 1:20215807‑M1/12‑1 (MQ=255) ccaactttttggggtcagtacaACTCGGGGCtttt < 1:7380613‑M1/13‑1 (MQ=255) ccaactttttggggtcagtacaACTCGGGGCtttt > 1:13874678‑M1/23‑35 (MQ=255) ccaactttttggggtcagtacaACTCGGGGCtttt < 1:339824‑M1/13‑1 (MQ=255) ccaactttttggggtcagtacaACTCGGGGCtttt > 1:2883616‑M1/23‑35 (MQ=255) cTCGGGTTGATAGTAAAATATCACTtgtactgcac < 1:15139544‑M1/35‑11 (MQ=255) cTCGGGTTGATAGTAAAATATCACTtgtactgcac < 1:14841937‑M1/35‑11 (MQ=255) caactttttggggtcagtacaACTCGGGGCTTTtc > 1:17359638‑M1/22‑35 (MQ=255) caactttttggggtcagtacaACTCGGGGCTTTtc > 1:4847296‑M1/22‑35 (MQ=255) actttttggggtcagtacaACTCGGGGCTTTtctc > 1:17227164‑M1/20‑35 (MQ=255) ggTTGATAGTAAAATATCACTtgtactgcacccat > 1:11426101‑M1/1‑21 (MQ=255) tttttggggtcagtacaACTCGGGGCTTTTCTCTa > 1:10540238‑M1/18‑35 (MQ=255) ttttggggtcagtacaACTCGGGGCTTTTCTCTAt < 1:11581269‑M1/19‑1 (MQ=255) ttttggggtcagtacaACTCGGGGCTTTTCTCTAt > 1:14785681‑M1/17‑35 (MQ=255) ttGATAGTAAAATATCACTtgtactgcacccattt > 1:19606351‑M1/1‑19 (MQ=255) ttGATAGTAAAATATCACTtgtactgcacccattt < 1:18534574‑M1/35‑17 (MQ=255) tttggggtcagtacaACTCGGGGCTTTTCTCTATc < 1:16140927‑M1/20‑1 (MQ=255) tttggggtcagtacaACTCGGGGCTTTTCTCTATc > 1:5909647‑M1/16‑35 (MQ=255) tGATAGTAAAATATCACTtgtactgcacccatttt < 1:1876136‑M1/35‑18 (MQ=255) tGATAGTAAAATATCACTtgtactgcacccatttt < 1:6690504‑M1/35‑18 (MQ=255) ttggggtcagtacaACTCGGGGCTTTTCTCTATCt > 1:8425105‑M1/15‑35 (MQ=255) ttggggtcagtacaACTCGGGGCTTTTCTCTATCt > 1:12127682‑M1/15‑35 (MQ=255) ttggggtcagtacaACTCGGGGCTTTTCTCTATCt > 1:6185761‑M1/15‑35 (MQ=255) gATAGTAAAATATCACTtgtactgcacccattttg > 1:8644247‑M1/1‑17 (MQ=255) tggggtcagtacaACTCGGGGCTTTTCTCTATCTg < 1:1739613‑M1/22‑1 (MQ=255) tggggtcagtacaACTCGGGGCTTTTCTCTATCTg < 1:19711171‑M1/22‑1 (MQ=255) tggggtcagtacaACTCGGGGCTTTTCTCTATCTg > 1:11507293‑M1/14‑35 (MQ=255) aTAGTAAAATATCACTtgtactgcacccattttgt < 1:11238373‑M1/35‑20 (MQ=255) aTAGTAAAATATCACTtgtactgcacccattttgt < 1:11299600‑M1/35‑20 (MQ=255) aTAGTAAAATATCACTtgtactgcacccattttgt < 1:8605442‑M1/35‑20 (MQ=255) aGTAAAATATCACTtgtactgcacccattttgttg > 1:8671‑M1/1‑14 (MQ=255) ggtcagtacaACTCGGGGCTTTTCTCTATCTGCCg > 1:13199820‑M1/11‑35 (MQ=255) gTAAAATATCACTtgtactgcacccattttgttgg > 1:18476787‑M1/1‑13 (MQ=255) gTAAAATATCACTtgtaatgcacccattttgttgg < 1:1045786‑M1/35‑23 (MQ=255) tAAAATATCACTtgtactgcacccattttgttgga > 1:8021345‑M1/1‑12 (MQ=255) gtcagtacaACTCTGGGCTTTTCTCTATCTGCCGt < 1:1280460‑M1/26‑1 (MQ=255) gtcagtacaACTCGGGGCTTTTCTCTATCTGCcgg < 1:2786296‑M1/26‑2 (MQ=255) tcagtacaACTCGGGGCTTTTCTCTATCTGCCGtt < 1:15851334‑M1/27‑1 (MQ=255) cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc < 1:15894172‑M1/28‑1 (MQ=255) cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc > 1:10164638‑M1/8‑35 (MQ=255) cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc > 1:3448358‑M1/8‑35 (MQ=255) cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc < 1:13725858‑M1/28‑1 (MQ=255) cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc > 1:5260650‑M1/8‑35 (MQ=255) aaaTATCACTtgtactgcacccattttgttggacg > 1:4028777‑M1/1‑10 (MQ=255) aaaTATCACTtgtactgcacccattttgttggacg < 1:1979318‑M1/35‑26 (MQ=255) agtacaACTCGGGGCTTTTCTCTATCTGCCGTtcc < 1:19137257‑M1/29‑2 (MQ=255) agtacaACTCGGGGCTTTTCTCTATCTGCCGTTCa < 1:13747648‑M1/29‑1 (MQ=255) agtacaACTCGGGGCTTTTCTCTATCTGCCGTTCa < 1:15780948‑M1/29‑1 (MQ=255) agtacaACTCGGGGCTTTTCTCTATCTGCCGTTCa < 1:19304301‑M1/29‑1 (MQ=255) aaTATCACTtgtactgcacccattttgttggacga < 1:9186861‑M1/35‑27 (MQ=255) atatCACTtgtactgcacccattttgttggacgat < 1:5154771‑M1/35‑28 (MQ=255) atatCACTtgtactgcacccattttgttggacaga > 1:17463347‑M1/1‑8 (MQ=255) tacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGc < 1:11151918‑M1/31‑1 (MQ=255) atCACTtgtactgcacccattttgttggacgatga < 1:11205532‑M1/35‑30 (MQ=255) atCACTtgtactgcacccattttgttggacgatga < 1:5610025‑M1/35‑30 (MQ=255) atCACTtgtactgcacccattttgttggacgatga > 1:3006609‑M1/1‑6 (MQ=255) tCACTtgtactgcacccattttgttggacgatgaa > 1:10125823‑M1/1‑5 (MQ=255) caACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTa > 1:369874‑M1/3‑35 (MQ=255) aACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTaa > 1:16644898‑M1/2‑35 (MQ=255) aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt > 1:828908/1‑35 (MQ=255) aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt < 1:6625480/35‑1 (MQ=255) aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt < 1:950802/35‑1 (MQ=255) aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt < 1:17816292/35‑1 (MQ=255) | CATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAT > REL606/16956‑17024 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |