New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 389983 | 64 (0.620) | 8 (0.100) | 5/36 | NT | 10.3% | coding (575/1374 nt) | proY | predicted cryptic proline transporter |
? | REL606 | = 3813056 | 92 (1.190) | intergenic (‑137/‑797) | ivbL/emrD | ilvB operon leader peptide/multidrug efflux system protein |
GGCAACCGACCGGTATTCATAACCTGTGGAGCAACGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/389944‑389983 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT < REL606/3813056‑3813023 GGCAACCGACCGGTATTCATAGCCTGTGGAGCAAC < 1:3641864/35‑1 GGCAACCGACCGGTATTCATAACCTGTGGAGCAAC > 1:9734554/1‑35 GGCAACCGACCGGTATTCATAACCTGTGGAGCAAC > 1:12732437/1‑35 GCAACCGACCGGTATTCATAACCTGTGGAGCAACG > 1:4890729/1‑35 GCAACCGACCGGTATTCATAACCTGTGGAGCAACG > 1:20327558/1‑35 CAACCGACCGGTATTCATAACCTGTGGAGCAACGG > 1:9977584/1‑35 CAACCGACCGGTATTCATAACCTGTGGAGCAACGG > 1:7237678/1‑35 CAACCGACCGGTATTCATAACCTGTGGAGCAACGG > 1:9829909/1‑35 AACCGCCCGGTATTCATAACCTGTGGAGCAACGGC < 1:14732398/35‑1 AACCGACCGGTATTCATAACCTGTGGAGCAACGGC > 1:8844121/1‑35 AACCGACCGGTATTCATAACCTGTGGAGCAACGGC > 1:1199364/1‑35 AACCGACCGGTATTCATAACCTGTGGAGCAACGGC > 1:9542785/1‑35 cCCGACCGGTATTCATAACCTGTGGAGCAACGGCG < 1:7444242/34‑1 ACCGACCGGTGTTCATAACCTGTGGAGCAACGGCG < 1:9844057/35‑1 ACCGACCGGTATTCATAACCTGTGGAGCAACGTCG > 1:16902442/1‑35 ACCGACCGGTATTCATAACCTGTGGAGCAACGGCG > 1:12405081/1‑35 CCGACCGGTATTCATAACCTGTGGAGCAACGGCGG > 1:16485979/1‑35 GACCGGTATTCATAACCTGTTGAGCAACGGCGGGt > 1:8444178/1‑34 GACCGGTATTCATAACCTGTGGAGCAACGGCGGGt > 1:2686075/1‑34 GACCGGTATTCATAACCTGTGGAGCAACGGCGGGt > 1:4231159/1‑34 GACCGGTATTCATAACCTGTGGAGCAACGGCGGGt > 1:6503178/1‑34 GACCGGTATTCATAACCTGTGGAGCAACGGCGGGc > 1:19253509/1‑34 GACCGGTATTCATAACCTGTGGAGCAACGGCGGGG > 1:5652978/1‑35 ACCGGTATTCATAACCTGTGGAGCAACGGCGGGGT > 1:19367179/1‑35 ACCGGTATTCATAACCTGTGGAGCAACGGCGGGGT > 1:19327987/1‑35 CCGGTATTCATAACCTGTGGAGCAACGGCGGGGTc > 1:6717725/1‑34 CCGGTATTCATAACCTGTGGAGCAACGGCGGGGTc > 1:4493295/1‑34 CCGGTATTCATAACCTGTGGAGCAACGGCGGGGTT > 1:7252045/1‑35 CCGGTATTCATAACCTGTGGAGCAACGGCGGGCTT > 1:13568657/1‑35 CCGGTATTCATAACCTGTGGAGCAACGGCGGCGTT > 1:5382434/1‑35 GTATTCATAACCTGTGGAGCAACGGCGGGTTTTTT > 1:11090048/1‑35 GTATTCATAACCTGTGGAGCAACGGCGGGTTTTTT > 1:18344343/1‑35 TATTCATAACCTGTGGAGCAACGGCGGGTTTTTTT > 1:3803041/1‑35 TATTCATAACCTGTGGAGCAACGGCGGGGTCTTTa > 1:12143159/1‑34 ATTCATAACCTGTGGAGCAACGGCGGGTTTTTTTG > 1:3818064/1‑35 ATTCATAACCTGTGGAGCAACGGCGGGGTTTTTTG > 1:7720340/1‑35 TTCATAACCTGTGGAGCAACGGCGGGGTTTTTTGT > 1:7550068/1‑35 CATAACCTGTGGAGCAACGGCGGGGTCTTTTGTTA > 1:3453930/1‑35 CGGCGGGGTTTTTTGTTATCTGCAATTCAGTACAA < 1:18907714/35‑1 CGGCGGGGTTTTTTGTTATCTGCAATTCAGTACAA < 1:1800338/35‑1 CGGCGGGGTTTTTTGTTATCTGCAATTCAGTACAA < 1:13395831/35‑1 CGGCGGGGTTTTTTGTTATCTGCAATTCAGTACAA < 1:17451156/35‑1 CGGCGGGGTTTTTTGTTATCTGCAATTAAGTACAA < 1:6496409/35‑1 ggaGGGGTTTTTTGTTATCTGCAATTCAGTACAAA < 1:1829410/32‑1 GGCTGGGTTTTTTGTTATCTGCAATTCAGTACAAA > 1:934885/1‑35 GGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAA < 1:5496811/35‑1 GGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAA > 1:1017486/1‑35 GGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAA > 1:2723911/1‑35 GGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAA > 1:13782962/1‑35 GGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAA < 1:11151765/35‑1 GGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAA < 1:12547245/35‑1 GCGGGGTTTTTTGTTATCTGCAATTCAGTACAAAA > 1:1141607/1‑35 CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC < 1:156321/35‑1 CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC > 1:14254001/1‑35 CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC < 1:6794658/35‑1 CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC > 1:7947040/1‑35 CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC < 1:18659189/35‑1 CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC < 1:5471956/35‑1 CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC < 1:5359911/35‑1 CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC < 1:19743797/35‑1 GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG < 1:8381026/35‑1 GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG > 1:10814122/1‑35 GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG > 1:1060720/1‑35 GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG > 1:16612700/1‑35 GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG > 1:16802864/1‑35 GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG > 1:18741165/1‑35 GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG > 1:483400/1‑35 GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG > 1:2379911/1‑35 GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG > 1:3319778/1‑35 GGGTTTTTTGTTATCTGCAATTTAGTACAAAACGT < 1:18465832/35‑1 GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT > 1:16082044/1‑35 GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT > 1:16709205/1‑35 GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT < 1:6670381/35‑1 GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT < 1:8014081/35‑1 GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT < 1:8422595/35‑1 GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT > 1:12836542/1‑35 GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT < 1:17485325/35‑1 GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT > 1:11032337/1‑35 GGCAACCGACCGGTATTCATAACCTGTGGAGCAACGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/389944‑389983 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT < REL606/3813056‑3813023 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |