New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 875814 =63 (0.610)19 (0.220) 5/40 NT 23.4% coding (127/597 nt) ybjG undecaprenyl pyrophosphate phosphatase
?REL606 = 3285418 72 (0.840)coding (277/654 nt) yhbL isoprenoid biosynthesis protein with amidotransferase‑like domain

Only 100 of 149 total aligned reads displayed.

AAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCG  >  REL606/3285384‑3285452
                                  |                                  
 aaTTGCTTAAATTCTTCGCCGCGCCAAACCCCCCc                                   <  1:4694345‑M2/35‑2 (MQ=255)
 aaTTGCTTAAATTCTTCGCCGCGCCAAACCCCCCc                                   >  1:10988355‑M2/1‑34 (MQ=255)
  aTTGCTTAAATTCTTCGCCGCGCCAAACCCCCCcg                                  <  1:7164230‑M2/35‑3 (MQ=255)
  aTTGCTTAAATTCTTCGCCGCGCCAAACCCCCCcg                                  <  1:5363426‑M2/35‑3 (MQ=255)
  aTTGCTTAAATTCTTCGCCGCGCCAAACCCCCCcg                                  >  1:18066657‑M2/1‑33 (MQ=255)
   ttGCTTAAATTCTTCGCCGCGCCAAACCCCCCcgg                                 <  1:2216517‑M2/35‑4 (MQ=255)
   ttGCTTAAATTCTTCGCCGCGCCAAACCCCACcgg                                 >  1:7615931‑M2/1‑32 (MQ=255)
    tGCTTAAATTCTTCGCCGCGCCAAACCCCCCcggc                                <  1:3122640‑M2/35‑5 (MQ=255)
    tGCTTAAATTCTTCGCCGCGCCAAACCCCCCcggc                                <  1:10737366‑M2/35‑5 (MQ=255)
    tGCTTAAATTCTTCGCCGCGCCAAACCCCCCcggc                                <  1:15067253‑M2/35‑5 (MQ=255)
    tGCTTAAATTCTTCGCCGCGCCAAACCCCCCcggc                                <  1:11895661‑M2/35‑5 (MQ=255)
    tGCTTAAATTCTTCGCCGCGACAAACCCCCCcggc                                >  1:14664523‑M2/1‑31 (MQ=255)
     gCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGca                               <  1:692619/35‑1 (MQ=255)
     gCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGca                               >  1:1094461/1‑35 (MQ=255)
      cTTAAATTCTTCGCCGCGCCAAACCCCCCCGGcac                              <  1:15252493/35‑1 (MQ=255)
      cTTAAATTCTTCGCCGCGCCAAACCCCCCCGGcac                              <  1:13116697/35‑1 (MQ=255)
      cTTAAATTCTTCGCCGCGCCAAACCCCCCCGGcac                              >  1:11009178/1‑35 (MQ=255)
       ttAAATTCTTCGCCGCGCCAAACCCCCCCGGcaca                             <  1:14837007/35‑1 (MQ=255)
       ttAAATTCTTCGCCGCGCCAAACCCCCCCGGcaca                             <  1:18211445/35‑1 (MQ=255)
        tAAATTCTTCGCCGCGCCAAACCCCCCCGGCACaa                            <  1:9133224/35‑1 (MQ=255)
         aaaTTCTTCGCCGCGCCAAACCCCCCCGGCACAAt                           <  1:6184026/35‑1 (MQ=255)
         aaaTTCTTCGCCGCGCCAAACCCCCCCGGCACAAt                           <  1:19127497/35‑1 (MQ=255)
           aTTCTTCGCCGCGCCAAACCCCCCCGGCACAATCa                         >  1:17378618/1‑35 (MQ=255)
           aTTCTTCGCCGCGCCAAACCCCCCCGGCACAATCa                         >  1:470793/1‑35 (MQ=255)
           aTTCTTCGCCGCGCCAAACCCCCCCGGCACAATCa                         <  1:19844240/35‑1 (MQ=255)
            ttcttcGCCGCGCCAAACCCCCCCGGCACAATCaa                        <  1:691553/35‑1 (MQ=255)
             tcttcGCCGCGCCAAACCCCCCCTGCACAATCAAc                       >  1:11350894/1‑35 (MQ=255)
             tcttcGCCGCGCCAAACCCCCCCGGCACAATCAAc                       >  1:20234836/1‑35 (MQ=255)
             tcttcGCCGCGCCAAACCCCCCCGGCACAATCAAc                       <  1:14429547/35‑1 (MQ=255)
             tcttcGCCGCGCCAAACCCCCCCGGCACAATCAAc                       >  1:7543674/1‑35 (MQ=255)
             tcttcGCCGCGCCAAACCCCCCCGGCACAATCAAc                       <  1:1822133/35‑1 (MQ=255)
             tcttcGCCGCGCCAAACCCCCCCGGCACAATCAAc                       <  1:20068928/35‑1 (MQ=255)
              cttcGCCGCGCAAACCCCCCCCGTCACAATCAACg                      <  1:19265406/35‑1 (MQ=25)
               ttcGCCGCGCCAAACCCCCCCGGCACAATCAACGc                     >  1:18557344/1‑35 (MQ=255)
               ttcGCCGCGCCAAACCCCCCCGGCACAATCAACGc                     >  1:8955079/1‑35 (MQ=255)
               ttcGCCGCGCCAAACCCCCCCGGCACAATCAACGc                     >  1:15963905/1‑35 (MQ=255)
               ttcGCCGCGCCAAACCCCCCCGGCACAATCAACGc                     <  1:15257295/35‑1 (MQ=255)
                 cgccgcGCCAAACCCCCCCGGCACAATCAACGCAt                   <  1:7419883/35‑1 (MQ=255)
                  gccgcGCCAAACCCCCCCGGCACAATCAACGCATc                  <  1:19068475/35‑1 (MQ=255)
                   ccgcGCCAAACCCCCCCGGCACAATCAACGCATcc                 >  1:7345985/1‑35 (MQ=255)
                   ccgcGCCAAACCCCCCCGGCACAATCAACGCATcc                 <  1:9915241/35‑1 (MQ=255)
                   ccgcGCCAAACCCCCCCGGCACAATCAACGCATcc                 <  1:11796913/35‑1 (MQ=255)
                   ccgcGCCAAACCCCCCCGGCACAATCAACGCATcc                 >  1:11571291/1‑35 (MQ=255)
                   ccgcGCCAAACCCCCCCGGCACAATCAACGCATcc                 <  1:8141955/35‑1 (MQ=255)
                   ccgaGCCAAACCCCCCCGGCACAATCAACGCATcc                 <  1:19296014/35‑1 (MQ=255)
                    cgcgCCAAACCCCCCCGGCACAATCAACGCATCCa                >  1:12608143/1‑35 (MQ=255)
                     gcgcCAAACCCCCCCGGCACAATCAACGCATCCAg               <  1:5813564/35‑1 (MQ=255)
                     gcgcCAAACCCCCCCGGCACAATCAACGCATCCAg               <  1:12751001/35‑1 (MQ=255)
                     ccaccaaaCCCCCCcggccagcaacggcaccacgg               >  1:15312708‑M2/4‑14 (MQ=255)
                      cgcCAAACCCCCCCGGCACAATCAACGCATCCAGt              >  1:18542799/1‑35 (MQ=255)
                      cgcCAAACCCCCCCGGCACAATCAACGCATCCAGt              >  1:3409301/1‑35 (MQ=255)
                      cgcCAAACCCCCCCGGCACAATCAACGCATCCAGt              >  1:4116386/1‑35 (MQ=255)
                       gcCAAACCCCCCCGGCACAATCAACGCATCCAGtt             >  1:10298830/1‑35 (MQ=255)
                       gcCAAACCCCCCCGGCACAATCAACGCATCCAGtt             <  1:17521996/35‑1 (MQ=255)
                       gcCAAACCCCCCCGGCACAATCAACGCATCCAGtt             >  1:12086909/1‑35 (MQ=255)
                       gcCAAACCCCCCCGGCACAATCAACGCATCCAGtt             >  1:1534679/1‑35 (MQ=255)
                        ccAACCCCCCCCGGCACAATCAACGCATCCAGTTc            <  1:13985431/35‑1 (MQ=255)
                        ccAAACCCCCCCGGCACAATCAACGCATCCAGTTc            >  1:1135822/1‑35 (MQ=255)
                        ccAAACCCCCCCGGCACAATCAACGCATCCAGTTc            >  1:12662739/1‑35 (MQ=255)
                        ccAAACCCCCCCGGCACAATCAACGCATCCAGTTc            >  1:264379/1‑35 (MQ=255)
                         nAAACCCCCCcggccagcaacggcaccacggtaat           >  1:9942611‑M2/1‑10 (MQ=255)
                         cAAACCCCCCcggccagcaacggcaccacggtaat           >  1:9442202‑M2/1‑10 (MQ=255)
                         cAAACCCCCCCGGCACAATCAACGCATCCAGTTCa           >  1:8646877/1‑35 (MQ=255)
                         cAAACCCCCCCGGCACAATCAACGCATCCAGTTCa           >  1:6197055/1‑35 (MQ=255)
                         aaaacCCCCCcggccagcaacggcaccacggtaat           >  1:18119420‑M2/2‑10 (MQ=255)
                          aagCCCCCCcggccagcaacggcaccacggtaatc          >  1:2347548‑M2/1‑9 (MQ=255)
                          aagCCCCCCcggccagcaacggcaccacggtaatc          >  1:13597295‑M2/1‑9 (MQ=255)
                          aaccccccccGGCACAATCAACGCATCCAGTTCAg          <  1:18540848/32‑1 (MQ=255)
                          aaaCCCCCCcggccagcaacggcaccacggtaatc          >  1:14925027‑M2/1‑9 (MQ=255)
                          aaaCCCCCCCGGCACAATCAACGCATCCAGTTCAg          >  1:8905042/1‑35 (MQ=255)
                          aaaCCCCCCCGGCACAATCAACGCATCCAGTTCAg          >  1:7173355/1‑35 (MQ=255)
                          aaaCCCCCCCGGCACAATCAACGCATCCAGTTCAg          <  1:11654166/35‑1 (MQ=255)
                          aaaCCCCCCCGGCACAATCAACGCATCCAGTTCAg          >  1:5030592/1‑35 (MQ=255)
                          aaaCACCCCCGGCACAATCAACGCATCCAGTTCAg          <  1:13242424/35‑1 (MQ=255)
                           aaGCCCCCcggccagcaacggcaccacggtaatca         >  1:9494065‑M2/1‑8 (MQ=255)
                           aaCCCCCCcggccagcaacggcaccacggtaatca         >  1:7997012‑M2/1‑8 (MQ=255)
                           aaCCCCCCCGGCACAATCAACGCATCCAGTTCAGc         >  1:15137429/1‑35 (MQ=255)
                           aaCCCCCCCGGCACAATCAACGCATCCAGTTCAGc         <  1:13932692/35‑1 (MQ=255)
                            aCCCCCCcggccagcaacggcaccacggtaatcaa        >  1:8949098‑M2/1‑7 (MQ=255)
                            aCCCCCCcggccagcaacggcaccacggtaatcaa        >  1:4140564‑M2/1‑7 (MQ=255)
                            aCCCCCCCGGCACAATCAACGCATCCAGTTCAGct        >  1:16545802/1‑34 (MQ=255)
                             tccccccggccagcaacggcaccacggtaatcaaa       >  1:17674200‑M2/2‑6 (MQ=255)
                             cccccccggccagcaacggcaccacggtaatcaaa       >  1:11815992‑M2/1‑6 (MQ=255)
                             cccccccggccagcaacggcaccacggtaatcaaa       >  1:2777538‑M2/1‑6 (MQ=255)
                             cccccccggccagcaacggcaccacggtaatcaaa       >  1:20455775‑M2/1‑6 (MQ=255)
                             cccccccggccagcaacggcaccacggtaatcaaa       >  1:13750854‑M2/1‑6 (MQ=255)
                             cccccccGGCACAATCAACGCATCCAGTTCAGCgg       >  1:17622731/1‑35 (MQ=255)
                             cccccccGGCACAATCAACGCATCCAGTTCAGCgg       >  1:20576312/1‑35 (MQ=255)
                              ccccccggccagcaacggcaccacggtaatcaaat      >  1:5820602‑M2/1‑5 (MQ=255)
                              ccccccggccagcaacggcaccacggtaatcaaat      >  1:12745906‑M2/1‑5 (MQ=255)
                              ccccccggccagcaacggcaccacggtaatcaaat      >  1:4932315‑M2/1‑5 (MQ=255)
                               cccccggccagcaacggcaccacggtaatcaaatc     >  1:8574143‑M2/1‑4 (MQ=255)
                               cccccggccagcaacggcaccacggtaatcaaatc     >  1:15772664‑M2/1‑4 (MQ=255)
                               cccccGGCACAATCAACGCATCCAGTTCAGCGGCa     >  1:10449583/1‑35 (MQ=255)
                                ccccGGCACAATCAACGCATCCAGTTCAGCGGCAt    <  1:14148155/35‑1 (MQ=255)
                                ccccGGCACAATCAACGCATCCAGTTCAGCGGCAt    >  1:481178/1‑35 (MQ=255)
                                 cccggccagcaacggcaccacggtaataaaatctt   >  1:14217126‑M2/1‑2 (MQ=255)
                                 cccGGCACAATCAACGCATCCAGTTCAGCGGCATc   >  1:20109918/1‑35 (MQ=255)
                                 cccGGCACAATCAACGCATCCAGTTCAGCGGCATc   >  1:10200390/1‑35 (MQ=255)
                                  ccggccagcaacggcaccacggtaatcaaatcttt  >  1:16400411‑M2/1‑1 (MQ=255)
                                  |                                  
AAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCG  >  REL606/3285384‑3285452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.