New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 313085 | 24 (0.230) | 4 (0.040) | 3/48 | NT | 6.4% | coding (272/951 nt) | yahI | predicted carbamate kinase‑like protein |
? | REL606 | = 661462 | 93 (0.910) | intergenic (+13/+47) | ybeV/hscC | Hsc56 co‑chaperone of HscC/Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription |
ACTGTGTGGCAGATACGCAGGGCGGCATCGGCTA‑‑‑‑‑‑‑‑ > REL606/313052‑313085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAACA < REL606/661462‑661455 ACTGTGTGGCAGATACGCAGGGCTGCATCGGCTAA > 1:2686087/1‑35 ACTGTGTGGCAGATACGCAGGGCGGCATCGGCTAA > 1:2946702/1‑35 ACTGTGTGGCAGATACGCAGGGCGGCATCGGCTAA > 1:5327017/1‑35 CTGTGTGACAGATACGCAGGGCGGCATCGGCTAAA > 1:1811277/1‑35 TGTGTGGCAGATACGCAGGGCGGCATCGGGTAAAA > 1:14153899/1‑35 TGTGTGGCAGATACGCAGGGCGGCATCGGCTAAca > 1:6851068/1‑33 TGTGTGGCAGATACGCAGGGCGGCATCGGCTAAAA > 1:1373953/1‑35 GTGGCAGATACGCAGGGCGGCATCGGCTAAAAAAA > 1:13624852/1‑35 TGGCAGATACGCAGGGCGGCATCGGCTAAAAAAtc > 1:4535506/1‑33 TGGCAGATACGCAGGGCGGCATCGGCTAAAAAAAC > 1:4488996/1‑35 GGCAGATATGCAGGGCGGCATCGGCTAAAAAAACA > 1:674702/1‑35 GGCAGATACGCAGGGCGGCATCGGCTAAAAAAACc > 1:5174974/1‑34 ACTGTGTGGCAGATACGCAGGGCGGCATCGGCTA‑‑‑‑‑‑‑‑ > REL606/313052‑313085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAACA < REL606/661462‑661455 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |