New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1183967102 (0.990)18 (0.180) 7/48 NT 19.3% intergenic (+43/+40) ycfR/ycfS hypothetical protein/hypothetical protein
?REL606 = 3012564 49 (0.480)coding (248/1020 nt) ECB_02814 conserved hypothetical protein

Only 100 of 112 total aligned reads displayed.

ATTCTTTCAGGAATGGGTAAATCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCTGGCCTCTACGGGT  >  REL606/3012530‑3012598
                                  |                                  
aTTCTTTCAGGAATGGGTAAATCAGGGCATgtcgg                                    <  1:18429874/35‑1 (MQ=255)
aTTCTTTCAGGAATGGGTAAATCAGGGCATgtcgg                                    >  1:6384554/1‑35 (MQ=255)
aTTCTTTCAGGAATGGGTAAATCAGGGCATgtcgg                                    >  1:17420415/1‑35 (MQ=255)
aTTCTTTCAGGAATGGGTAAATCAGGGCATgtcgg                                    <  1:1173635/35‑1 (MQ=255)
aTTCTTTCAGGAATGGGTAAATCAGGGCATgtcgg                                    >  1:17587667/1‑35 (MQ=255)
aTTCTTTCAGGAATGGGTAAATCAGGGCATgtcgg                                    <  1:9186507/35‑1 (MQ=255)
 ttCTTTCAGGAATGGGTAAATCAGGGCATgtcggt                                   <  1:16088274/35‑1 (MQ=255)
 ttCTTTCAGGAATGGGTAAATCAGGGCATgtcggt                                   <  1:14245202/35‑1 (MQ=255)
 ttCTTTCAGGAATGGGTAAATCAGGGCATgtcggt                                   <  1:4615365/35‑1 (MQ=255)
 ttCTTTCAGGAATGGGTAAATCAGGGCATGTCGGg                                   <  1:18680286‑M2/35‑2 (MQ=255)
  tCTTTCAGGAATGGGTAAATCAGGGCATgtcggtc                                  <  1:19272391/35‑1 (MQ=255)
  tCTTTCAGGAATGGGTAAATCAGGGCATgtcggtc                                  <  1:10871191/35‑1 (MQ=255)
  tCTTTCAGGAATGGGTAAATCAGGGCATGTCGGgg                                  <  1:1125036‑M2/35‑3 (MQ=255)
   cTTTCAGGAATGGGTAAATCAGGGCATgtcggtcg                                 <  1:10941492/35‑1 (MQ=255)
   cTTTCAGGAATGGGTAAATCAGGGCATgtcggtcg                                 <  1:13194860/35‑1 (MQ=255)
    tttCAGGAATGGGTAAATCAGGGCATGTCGGTCGt                                <  1:18890248/35‑1 (MQ=255)
    tttCAGGAATGGGTAAATCAGGGCATGTCGGTCGt                                <  1:12621644/35‑1 (MQ=255)
    tttCAGGAATGGGTAAATCAGGGCATGTCGGTCGt                                <  1:4903102/35‑1 (MQ=255)
     ttCAGGAATGGGTAAATCAGGGCATGTCGGggggg                               <  1:14659518‑M2/35‑6 (MQ=255)
     ttCAGGAATGGGTAAATCAGGGCATGTCGGggggg                               <  1:8579810‑M2/35‑6 (MQ=255)
     ttCAGGAATGGGTAAATCAGGGCATGTCGGTCGTa                               <  1:16077672/35‑1 (MQ=255)
     ttCAGGAATGGGTAAATCAGGGCATGTCGGTCGTa                               <  1:7876778/35‑1 (MQ=255)
      tCAGGAATGGGTAAATCAGGGCATGTCGGgggggg                              <  1:5796092‑M2/35‑7 (MQ=255)
      tCAGGAATGGGTAAATCAGGGCATGTCGGggggca                              <  1:13754556‑M2/35‑7 (MQ=255)
      tCAGGAATGGGTAAATCAGGGCATGTCGGggggaa                              <  1:17009617‑M2/35‑7 (MQ=255)
      tCAGGAATGGGTAAATCAGGGCATGTCGGTCGTaa                              <  1:2339907/35‑1 (MQ=255)
      ctaGGAATGGGTAAATCAGGGCATGTCGGTCGTaa                              <  1:7452965/33‑1 (MQ=255)
       cAGGAATGGGTAAATCAGGGCATGTCGGgggtaaa                             <  1:15240856‑M2/35‑8 (MQ=255)
       cAGGAATGGGTAAATCAGGGCATGTCGGgggggaa                             <  1:13560055‑M2/35‑8 (MQ=255)
       cAGGAATGGGTAAATCAGGGCATGTCGGTCGTaaa                             <  1:12196838/35‑1 (MQ=255)
        aGGAATGGGTAAATCAGGGCATGTCGGgggggaaa                            <  1:13313666‑M2/35‑9 (MQ=255)
        aGGAATGGGTAAATCAGGGCATGTCGGggggaaaa                            <  1:9118992‑M2/35‑9 (MQ=255)
        aGGAATGGGTAAATCAGGGCATGTCGGTCGTaaaa                            <  1:11478515/35‑1 (MQ=255)
        aGGAATGGGTAAATCAGGGCATGTCGGTCGTaaaa                            <  1:14578117/35‑1 (MQ=255)
        aGGAATGGGTAAATCAGGGCATGTCGGTCGTaaaa                            <  1:19976233/35‑1 (MQ=255)
         ggAATGGGTAAATCAGGGCATGTCGGgggggaaaa                           <  1:15009878‑M2/35‑10 (MQ=255)
         ggAATGGGTAAATCAGGGCATGTCGGgggggaaaa                           <  1:9064727‑M2/35‑10 (MQ=255)
         ggAATGGGTAAATCAGGGCATGTCGGTCGTAAAAt                           <  1:7690587/35‑1 (MQ=255)
         ggAATGGGTAAATCAGGGCATGTCGGTCGTAAAAt                           <  1:6176816/35‑1 (MQ=255)
         ggAATGGGTAAATCAGGGCATGTCGGTCGTAAAAt                           <  1:9546388/35‑1 (MQ=255)
          gAATGGGTAAATCAGGGCATGTCGGgggggaaaag                          <  1:17640164‑M2/35‑11 (MQ=255)
          gAATGGGTAAATCAGGGCATGTCGGgggggaaaaa                          <  1:15703514‑M2/35‑11 (MQ=255)
          gAATGGGTAAATCAGGGCATGTCGGgggggaaaaa                          <  1:19795009‑M2/35‑11 (MQ=255)
          gAATGGGTAAATCAGGGCATGTCGGgggggaaaaa                          <  1:14609295‑M2/35‑11 (MQ=255)
          gAATGGGTAAATCAGGGCATGTCGGgggggaaaaa                          <  1:7897060‑M2/35‑11 (MQ=255)
          gAATGGGTAAATCAGGGCATGTCGGgggggaaaaa                          <  1:9661755‑M2/35‑11 (MQ=255)
          gAATGGGTAAATCAGGGCATGTCGGggggaaaaat                          <  1:17617533‑M2/35‑11 (MQ=255)
           aaTGGGTAAATCAGGGCATGTCGGgggggaaaaat                         <  1:18387730‑M2/35‑12 (MQ=255)
           aaTGGGTAAATCAGGGCATGTCGGgggggaaaaat                         <  1:12583644‑M2/35‑12 (MQ=255)
           aaTGGGTAAATCAGGGCATGTCGGgggggaaaaag                         <  1:6435111‑M2/35‑12 (MQ=255)
            aTGTGTAAATCAGGGCATGTCGGTGCTAAAAAGTc                        >  1:11991044/1‑35 (MQ=19)
            aTGGGTAAATCAGGGCATGTCGGggggaaaaaaac                        <  1:5976034‑M2/35‑13 (MQ=255)
            aTGGGTAAATCAGGGCATGTCGGTCGTAAAATGTc                        <  1:2833804/35‑1 (MQ=255)
            aTGGGTAAATCAGGGCATGTCGGTCGTAAAATGTc                        <  1:4308989/35‑1 (MQ=255)
            aTGGGTAAATCAGGGCATGTCGGTCGTAAAATGTc                        <  1:13840841/35‑1 (MQ=255)
            aTGGGTAAATCAGGGCATGTCGGGCGTAAAAtatt                        >  1:20448259/1‑32 (MQ=37)
             tGGGTAAATCAGGGCATGTCGGTCGTAAAATGTCa                       <  1:12138433/35‑1 (MQ=255)
             tGGGTAAATCAGGGCATGTCGGTCGTAAAATGTCa                       <  1:18069950/35‑1 (MQ=255)
              gggTAAATCAGGGCATGTCGGTCGTAAAATGTCAg                      <  1:18462730/35‑1 (MQ=255)
               ggTAAATCAGGGCATGTCGGTCGTAAAATGTCAGc                     <  1:15480691/35‑1 (MQ=255)
               ggTAAATCAGGGCATGTCGGTCGTAAAATGTCAGc                     <  1:6083861/35‑1 (MQ=255)
               ggTAAATCAGGGCATGTCGGTCGTAAAATGTCAGc                     <  1:3186087/35‑1 (MQ=255)
               gatAAATCAGGGCATGTCGGTCGTAAAATGTCAGc                     <  1:8399633/33‑1 (MQ=255)
                gTAAATCAGGGCATGTCGGTCGTAAAATGTCAGCg                    <  1:19671091/35‑1 (MQ=255)
                 tAAATCAGGGCATGTCGGTCGTAAAATGTCAGCGa                   <  1:14724169/35‑1 (MQ=255)
                  aaaTCAGGGCATGTCGGTCGTAAAATGTCAGCGAc                  <  1:12522403/35‑1 (MQ=255)
                  aaaTCAGGGCATGTCGGTCGTAAAATGTCAGCGAc                  <  1:421219/35‑1 (MQ=255)
                  aaaTCAGGGCATGTCGGTCGTAAAATGTCAGCGAc                  <  1:1724733/35‑1 (MQ=255)
                  aaaTCAGGGCATGTCGGTCGTAAAATGTCAGCGAc                  <  1:16879953/35‑1 (MQ=255)
                     tCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCt               <  1:4172094/35‑1 (MQ=255)
                     tCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCt               <  1:2329311/35‑1 (MQ=255)
                     tCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCt               <  1:1422369/35‑1 (MQ=255)
                     tCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCt               <  1:10248912/35‑1 (MQ=255)
                     tCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCt               <  1:2043635/35‑1 (MQ=255)
                     tCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCt               <  1:19425854/35‑1 (MQ=255)
                      cAGGGCATGTCGGTCGTAAAATGTCAGCGACGCTg              <  1:3545159/35‑1 (MQ=255)
                      cAGGGCATGTCGGTCGTAAAATGTCAGCGACGCTg              <  1:11293608/35‑1 (MQ=255)
                      cAGGGCATGTCGGTCGTAAAATGTCAGCGACGCTg              <  1:6723386/35‑1 (MQ=255)
                       aGGGCATGTCGGTCGTAAAATGTCAGCGACGCTgg             <  1:2114136/35‑1 (MQ=255)
                        gggCATGTCGGTCGTAAAATGTCAGCGACGCTGGc            <  1:8268767/35‑1 (MQ=255)
                        gggCATGTCGGTCGTAAAATGTCAGCGACGCTGGc            <  1:20564397/35‑1 (MQ=255)
                        gggCATGTCGGTCGTAAAATGTCAGCGACGCTGGc            <  1:9097661/35‑1 (MQ=255)
                         ggCATGTCGGTCGTAAAATGTCAGCGACGCTGGcc           <  1:16705644/35‑1 (MQ=255)
                          gCATGTCGGTCGTAAAATGTCAGCGACGCTGGCct          <  1:14407048/35‑1 (MQ=255)
                          ctaTGTCGGTCGTAAAATGTCAGCGACGCTGGCct          <  1:10041623/33‑1 (MQ=255)
                           cATGTCGGTCGTAAAATGTCAGCGACGCTGGCctc         <  1:9372688/35‑1 (MQ=255)
                              gtcggtcgTAAAATGTCAGCGACGCTGGCCTCTAc      <  1:13794316/35‑1 (MQ=255)
                               tcggtcgTAAAATGTCAGCGACGCTGGCCTCTACg     <  1:15583045/35‑1 (MQ=255)
                               tcggtcgTAAAATGTCAGCGACGCTGGCCTCTACg     <  1:12408508/35‑1 (MQ=255)
                               tcggtcgTAAAATGTCAGCGACGCTGGCCTCTACg     <  1:13674152/35‑1 (MQ=255)
                               tcggtcgTAAAATGTCAGCGACGCTGGCCTCTACg     <  1:9524109/35‑1 (MQ=255)
                                cggtcgTAAAATGTCAGCGACGCTGGCCTCTACgg    <  1:13834412/35‑1 (MQ=255)
                                cggtcgTAAAATGTCAGCGACGCTGGCCTCTACgg    <  1:3838209/35‑1 (MQ=255)
                                 ggtcgTAAAATGTCAGCGACGCTGGCCTCTACggg   <  1:5700103/35‑1 (MQ=255)
                                  gtcgTAAAATGTCAGCGCCGCTGGCCTCTACGGGt  <  1:8248224/35‑1 (MQ=255)
                                  gtcgTAAAATGTCAGCGACGCTGGCCTCTACgggg  >  1:15282064/1‑34 (MQ=255)
                                  gtcgTAAAATGTCAGCGACGCTGGCCTCTACGGGt  <  1:7119736/35‑1 (MQ=255)
                                  gtcgTAAAATGTCAGCGACGCTGGCCTCTACGGGt  <  1:14821687/35‑1 (MQ=255)
                                  gtcgTAAAATGTCAGCGACGCTGGCCTCTACGGGt  >  1:10445574/1‑35 (MQ=255)
                                  gtcgTAAAATGTCAGCGACGCTGGCCTCTACGGGt  >  1:10279256/1‑35 (MQ=255)
                                  |                                  
ATTCTTTCAGGAATGGGTAAATCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCTGGCCTCTACGGGT  >  REL606/3012530‑3012598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.