New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 924276 =93 (0.910)10 (0.100) 3/46 NT 12.3% coding (714/1431 nt) ybjT conserved protein with NAD(P)‑binding Rossmann‑fold domain
?REL606 = 1365457 53 (0.540)coding (824/978 nt) pspF DNA‑binding transcriptional activator

Only 100 of 219 total aligned reads displayed.

TCACATTGAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGATCAACCAGCGGCGCTTAC  >  REL606/924242‑924310
                                  |                                  
tgttttttcaggtcgatagcctgcaaCAGCGGGTg                                    <  1:8685552‑M1/9‑1 (MQ=255)
tgctgcatctgaaactcacgtaaatccagcggcag                                    >  1:6517882‑M1/35‑35 (MQ=255)
tgctgcatctgaaactcacgtaaatccagcggcag                                    >  1:2105873‑M1/35‑35 (MQ=255)
tCACATTGAGAAACCACACCGAAATCCAGCGGGTg                                    >  1:9799450/1‑35 (MQ=255)
tCACATTGAGAAACCACACCGAAATCCAGCGGGTg                                    >  1:16490352/1‑35 (MQ=255)
tCACATTGAGAAACCACACCGAAATCCAGCGGGTg                                    <  1:10027844/35‑1 (MQ=255)
cgagcaaggccgtctgcgtgttggtgCAGGGGGTg                                    <  1:13054510‑M1/9‑1 (MQ=255)
cgagcaaggccgtctgcgtgttggtgCAGCGGGTg                                    <  1:3516559‑M1/9‑1 (MQ=255)
 gttttttcaggtcgatagcctgcaaCAGCGGGTgg                                   <  1:9119237‑M1/10‑1 (MQ=255)
 gctgcatctgaaactcacgtaaatccagcggcagg                                   <  1:10567469‑M1/2‑1 (MQ=255)
 gagcaaggccgtctgcgtgttggtgCAGCGGGTgg                                   <  1:15060910‑M1/10‑1 (MQ=255)
 cacaTTGAGAAACCACACCGAAATCCAGCGGGTgg                                   >  1:9270563/1‑35 (MQ=255)
  ttttttcaggtcgatagcctgcaaCAGCGGCTggg                                  <  1:16784976‑M1/11‑1 (MQ=255)
  gtcggcctgatgaatttgccgtagCAGCGGGTggg                                  <  1:3206408‑M1/11‑1 (MQ=255)
  gtcggcctgatgaatttgccgtagCAGCGGGGggg                                  <  1:4885443‑M1/11‑1 (MQ=255)
  ctgcatctgaaactcacgtaaatccagcggcaggg                                  <  1:4242041‑M1/3‑1 (MQ=255)
  acaTTGAGAAACCACACCGAAATCCAGCGGGTggg                                  <  1:11594694/35‑1 (MQ=255)
   tttttcaggtcgatagcctgcaaCAGCGGGTgggg                                 <  1:6791967‑M1/12‑1 (MQ=255)
   tcggcctgatgaatttgccgtagCAGCGGGCgggg                                 <  1:1479523‑M1/12‑1 (MQ=255)
   tacatctgaaactcacgtaaatccagcggcagggg                                 <  1:4813469‑M1/4‑1 (MQ=255)
   gcaagtccgtctgcgtgttggtgCAGCGGGTgggg                                 <  1:11401794‑M1/12‑1 (MQ=255)
   caTTGAGAAACCACACCGAAATCCAGCGGGTgggg                                 >  1:11288141/1‑35 (MQ=255)
   atttGAGAAACCACACCGAAATCCAGCGGGTgggg                                 <  1:11826340/33‑1 (MQ=255)
    ttttcaggtcgatagcctgcaaCAGCGGGtggggg                                <  1:2718463‑M1/13‑2 (MQ=255)
    gcatctgaaactcacgtaaatccagcggcaggggg                                <  1:6607796‑M1/5‑2 (MQ=255)
    gcatctgaaactcacgtaaatccagcggcaggggg                                <  1:2511394‑M1/5‑2 (MQ=255)
    cggcctgatgaatttgccgtagCAGCGGGtggggg                                <  1:14018094‑M1/13‑2 (MQ=255)
    cggcctgatgaatttgccgtagCAGCGGGtggggg                                <  1:12571008‑M1/13‑2 (MQ=255)
    aTTGAGAAACCACACCGAAATCCAGCGGGTGGGGa                                <  1:14237191/35‑1 (MQ=255)
    aTTGAGAAACCACACCGAAATCCAGCGGGTGGGGa                                >  1:7674932/1‑35 (MQ=255)
    aTTGAGAAACCACACCGAAATCCAGCGGGTGGGGa                                >  1:310105/1‑35 (MQ=255)
    aTTGAGAAACCACACCGAAATCCAGCGGGTGGGGa                                >  1:19832265/1‑35 (MQ=255)
     ttGAGAAACCACACCGAAATCCAGCGGGTGGGGAg                               >  1:5405766/1‑35 (MQ=255)
     ttGAGAAACCACACCGAAATCCAGCGGGTGGGGAg                               >  1:15905007/1‑35 (MQ=255)
     ttGAGAAACCACACCGAAATCCAGCGGGCGGGGAg                               >  1:13069049/1‑35 (MQ=255)
     ggcctgatgaatttgccgtagCAGCGGgtgggggg                               <  1:2584000‑M1/14‑3 (MQ=255)
      tGAGAAACCACACCGAAATCCAGCGGGTGGGGAgg                              >  1:6051386/1‑35 (MQ=255)
      tGAGAAACCACACCGAAATCCAGCGGGTGGGGAgg                              <  1:19705341/35‑1 (MQ=255)
      tGAGAAACCACACCGAAATCCAGCGGGTGGGGAgg                              <  1:8026821/35‑1 (MQ=255)
      tGAGAAACCACACCGAAATCAAGCGGGTGGGGAgg                              <  1:3913305/35‑1 (MQ=255)
      gcctgatgaatttgccgtagCAGCGggtggggggg                              <  1:16142693‑M1/15‑4 (MQ=255)
      atctgaaactcacgtaaatccagcggcaggggggg                              <  1:14119579‑M1/7‑4 (MQ=255)
      aggccgtctgcgtgttggtgCAGCGggtggggcgg                              <  1:18086626‑M1/15‑4 (MQ=255)
       tctgaaactcacgtaaatccagcggcagggggggg                             <  1:19073614‑M1/8‑1 (MQ=255)
       tctgaaactcacgtaaatccagcggcagggggggg                             <  1:4453917‑M1/8‑1 (MQ=255)
       gagaAACCACACCGAAATCCAGCGGGTGGGGAggg                             <  1:3123831/35‑1 (MQ=255)
       gagaAACCACACCGAAATCCAGCGGGTGGGGAggg                             >  1:10812087/1‑35 (MQ=255)
       gagaAACCACACCGAAATCCAGCGGGTGGGGAggg                             >  1:16457697/1‑35 (MQ=255)
        ctgaaactcacgtaaatccagcggcaggggggggg                            <  1:14561847‑M1/9‑1 (MQ=255)
        caggtcgatagcctgcaaCAGCGGGTGGGGGgggg                            <  1:5784655‑M1/17‑1 (MQ=255)
        agaAACCACACCGAAATCCAGCGGGTGGGGAgggg                            <  1:7400466/35‑1 (MQ=255)
         tgaaactcacgtaaatccagcggcaGGGGGggggg                           <  1:13459544‑M1/10‑1 (MQ=255)
         gaAACCACACCGAAATCCAGCGGGTGGGGAggggg                           >  1:5628438/1‑35 (MQ=255)
         ccgtctgcgtgttggtgCAGCGGGTGGGGCggggg                           <  1:16179321‑M1/18‑1 (MQ=255)
          aaaCCACACCGAAATCCAGCTGGTGGGGAGgggga                          >  1:14834241/1‑35 (MQ=255)
          aaaCCACACCGAAATCCAGCGGGTGGGGAGgggga                          >  1:2991347/1‑35 (MQ=255)
          aaaCCACACCGAAATCCAGCGGGTGGGGAGgggga                          >  1:8329016/1‑35 (MQ=255)
          aaaCCACACCGAAATCCAGCGGGTGGGGAGgggga                          >  1:9362919/1‑35 (MQ=255)
          aaaCCACACCGAAATCCAGCGGGTGGGGAGgggga                          <  1:12952816/35‑1 (MQ=255)
           aaCCACACCGAAATCCAGCGGGTGGGGAGggggat                         >  1:9701470/1‑35 (MQ=255)
            aCCACACCGAAATCCAGCGGGTGGGGAGggggatg                        <  1:5324040/35‑1 (MQ=255)
            aCCACACCGAAATCCAGCGGGTGGGGAGggggatg                        >  1:8273181/1‑35 (MQ=255)
             ccACACCGAAATCCAGCGGGTGGGGAGggggatgg                       <  1:16872874/35‑1 (MQ=255)
             ccACACCGAAATCCAGCGGGTGGGGAGggggatgg                       <  1:18514231/35‑1 (MQ=255)
               acacCGAAATCCAGCGGGTGGGGAGggggatgggg                     <  1:3180820/35‑1 (MQ=255)
               acacCGAAATCCAGCGGGTGGGGAGggggatgggg                     >  1:1624157/1‑35 (MQ=255)
                cacCGAAATCCAGCGGGTGGGGAGggggatgggga                    <  1:16629486/35‑1 (MQ=255)
                cacCGAAATCCAGCGGGTGGGGAGggggatgggga                    <  1:1992328/35‑1 (MQ=255)
                 acCGAAATCCAGCGGGTGGGGCGggggatggggat                   >  1:9032849/1‑35 (MQ=255)
                 acCGAAATCCAGCGGGTGGGGAGggggatggggat                   <  1:9447905/35‑1 (MQ=255)
                  ccGAAATCCAGCGGGTGGGGAGGGGGGTGGGGATc                  <  1:12012110/35‑1 (MQ=255)
                  ccGAAATCCAGCGGGTGGGGAGGGGGATGTGGATc                  >  1:8919581/1‑35 (MQ=255)
                  ccGAAATCCAGCGGGTGGGGAGGGGGATGGGGATc                  >  1:19340414/1‑35 (MQ=255)
                  ccGAAATCCAGCGGGTGGGGAGGGGGATGGGGATc                  <  1:17748258/35‑1 (MQ=255)
                   cGAAATCCAGCGGGTGGGGAGGGGGATGGGGATCa                 >  1:15403418/1‑35 (MQ=255)
                   cGAAATCCAGCGGGTGGGGAGGGGGATGGGGATCa                 >  1:1744872/1‑35 (MQ=255)
                    gAAATCCAGCGGGTGGGGAGGGGGATGGGGATCaa                <  1:7984693/35‑1 (MQ=255)
                    gAAATCCAGCGGGTGGGGAGGGGGATGGGGATCaa                <  1:1100836/35‑1 (MQ=255)
                    gAAATCCAGCGGGTGGGGAGGGGGATGGGGATCaa                >  1:11495630/1‑35 (MQ=255)
                    gAAATCCAGCGGGTGGGGAGGGGGATGGGGATCaa                <  1:5698409/35‑1 (MQ=255)
                    gAAATCCAGCGGGTGGGGAGGGGGATGGGGATCaa                >  1:2477400/1‑35 (MQ=255)
                    gAAATCCAGCGGGTGGGGAGGGGGATGGGGATCaa                >  1:15837827/1‑35 (MQ=255)
                     aaaTCCAGCGGGTGGGGAGGGGGATGGGGATCAAc               <  1:2809098/35‑1 (MQ=255)
                      aaTCCAGCGGGTGGGGAGGGGGATGGGGATCAAcc              <  1:1825292/35‑1 (MQ=255)
                      aaTCCAGCGGGTGGGGAGGGGGATGGGGATCAAcc              >  1:7161409/1‑35 (MQ=255)
                       aTCCAGCGGGTGGGGAGGGGGATGGGGATCAACCa             <  1:5436798/35‑1 (MQ=255)
                        tCCAGCGGGTGGGGAGGGGGATGGGGATCAACCAg            >  1:17875728/1‑35 (MQ=255)
                        tCCAGCGGGTGGGGAGGGGGATGGGGATCAACCAg            <  1:10317080/35‑1 (MQ=255)
                        tCCAGCGGGTGGGGAGGGGGATGGGGATCAACCAg            <  1:3809827/35‑1 (MQ=255)
                        tCCAGCGGGTGGGGAGGGGGATGGGGATCAACCAg            <  1:6188992/35‑1 (MQ=255)
                           AGCGGGTGGGGAGGGGGATGGGGATCAACCagcgt         <  1:18161341‑M1/35‑2 (MQ=255)
                           AGCGGGTGGGGAGGGGGATGGGGATCAACCAgcgg         <  1:6960923‑M1/35‑1 (MQ=255)
                            GCGGGTGGGGAGGGGGATGGGGATCAACCAgcggc        >  1:17857781‑M1/1‑35 (MQ=255)
                              GGGTGGGGAGGGGGATGGGGATCAACCAGCGgcgc      >  1:14362642‑M1/1‑35 (MQ=255)
                               GGTGGGGAGGTGGATGGGGATCAACCAGCGGCGCt     <  1:16758406‑M1/35‑1 (MQ=255)
                               GGTGGGGAGGGGGATGGGGATCAACCAGCGGCGCt     >  1:7892919‑M1/1‑35 (MQ=255)
                               GGTGGGGAGGGGGATGGGGATCAACCAGCGGCGCt     <  1:4365142‑M1/35‑1 (MQ=255)
                               GGTGGGGAGGGGGATGGGGATCAACCAGCGGCGCt     <  1:10435300‑M1/35‑1 (MQ=255)
                                 tGGGGAGGGGGATGGGGATCAACCAGCGTCGCTTa   >  1:1572724/1‑35 (MQ=255)
                                  GGGGAGGGGGATGGGGATCAACCAGCGGCGCTTAc  >  1:19633346‑M1/1‑35 (MQ=255)
                                  |                                  
TCACATTGAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGATCAACCAGCGGCGCTTAC  >  REL606/924242‑924310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.