Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 378,366 | 1 | .→G | 1.3% | 0.3 ‑1.7 ‑0.0 | 159 | coding (77/912 nt) | rdgC | recombination associated protein |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (2/0): ref base (65/92): total (67/92) | ||||||||||
Fisher's exact test strand distribution p-value = 1.76e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.99e-01 |
Only 100 of 179 total aligned reads displayed.
GCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAATCTC > REL606/378332‑378400 | gCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCt > 1:14105129/1‑35 (MQ=255) cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCT‑g > 1:1855836/1‑35 (MQ=255) cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCT‑g < 1:182367/35‑1 (MQ=255) cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCT‑g < 1:19226084/35‑1 (MQ=255) cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCT‑g < 1:19884633/35‑1 (MQ=255) cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCT‑g < 1:20238703/35‑1 (MQ=255) cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCT‑g < 1:9265430/35‑1 (MQ=255) cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCT‑g > 1:11128369/1‑35 (MQ=255) tGCCGCATGGGGTAAATGCCATCGAGGCTAGCT‑gg > 1:17103843/1‑34 (MQ=255) tGCCGCATGGGGTAAATGCCATCGAGGCTAGCT‑Gt < 1:2129760/35‑1 (MQ=255) gCCGCATGGGGTAAATGCCATCGAGGCTAGCT‑Gtt < 1:19568457/35‑1 (MQ=255) ccGCATGGGGTAAATGCCATCGAGGCTAGCT‑Gttt < 1:14426891/35‑1 (MQ=255) cGCATGGGGTAAATGCCATCGAGGCTAGCT‑Gtttt < 1:16023852/35‑1 (MQ=255) cGCATGGGGTAAATGCCATCGAGGCTAGCT‑Gtttt < 1:640704/35‑1 (MQ=255) cGCATGGGGTAAATGCCATCGAGGCTAGCT‑Gtttt < 1:3914730/35‑1 (MQ=255) cGCATGGGGTAAATGCCATCGAGGCTAGCT‑Ggttt > 1:17019572/1‑35 (MQ=255) gCATGGGGTAAATGCCATCGAGGCTAGCT‑Gttttt < 1:1551219/35‑1 (MQ=255) gCATGGGGTAAATGCCATCGAGGCTAGCT‑Ggtttt > 1:11711418/1‑35 (MQ=255) gCATGGGGTAAATGCCATCGAGGCTAGCT‑Ggtttt > 1:17012768/1‑35 (MQ=255) cATGGGGTAAATGCCATCGAGGCTAGCT‑GTTTTTc < 1:15952508/35‑1 (MQ=255) cATGGGGTAAATGCCATCGAGGCTAGCT‑GTTTTTc > 1:14811818/1‑35 (MQ=255) cATGGGGTAAATGCCATCGAGGCTAGCT‑GTTTTTc < 1:10786445/35‑1 (MQ=255) aTGGGGTAAATGCCATCGAGGCTAGCT‑Ggtttttc > 1:2181252/1‑33 (MQ=37) aTGGGGTAAATGCCATCGAGGCTAGCT‑Ggtttttc > 1:189676/1‑33 (MQ=37) tGGGGTAAATGCCATCGAGGATAGCT‑GTTTTTCCa < 1:13363152/35‑1 (MQ=255) tGGGGTAAAGGCCATCGAGGCTAGCT‑GTTTTTCCa < 1:8866526/35‑1 (MQ=255) gggggT‑AATGCCATCGAGGCTAGCT‑GTTTTTCCAt < 1:126025/34‑1 (MQ=38) ggggTAAATGCCATCGAGGCTAGCTGGTTTTTcct > 1:2399023/1‑34 (MQ=25) ggggTAAATGCCATCGAGGCTAGCTGGTTTTTcct > 1:8521332/1‑34 (MQ=25) ggggTAAATGCCATCGAGGCTAGCT‑GTTTTTCCAt < 1:19711986/35‑1 (MQ=255) ggggTAAATGCCATCGAGGCTAGCT‑GTTTTTCCAt > 1:6963073/1‑35 (MQ=255) ggggTAAATGCCATCGAGGCTAGCT‑GTTTTTCCAt < 1:7226527/35‑1 (MQ=255) ggggTAAATGCCATCGAGGCTAGCT‑GTTTTTCCAt > 1:12079684/1‑35 (MQ=255) gggTAAATGCCATCGAGGCTAGCT‑GGTTTTCCAtc > 1:11393974/1‑35 (MQ=255) ggTAAATGCCATCGAGGCTAGCT‑GTTTTTCCAtct < 1:15869751/35‑1 (MQ=255) ggTAAATGCCATCGAGGCTAGCT‑GTTTTTCCAtct < 1:2276405/35‑1 (MQ=255) ggTAAATGCCATCGAGGCTAGCT‑GTTTTTCCAtct < 1:3916952/35‑1 (MQ=255) ggTAAATGCCATCGAGGCTAGCT‑GTTTTTCCAtct < 1:8004419/35‑1 (MQ=255) ggTAAATGCCATCGAGGCTAGCT‑GGTTTTTCAtct > 1:5661979/1‑35 (MQ=37) ggTAAATGCCATCGAGGCTAGCT‑GGTTTTCCAtct > 1:15624774/1‑35 (MQ=255) gTAAATGCCATCGAGGCTAGCT‑GTTTTTTCCtctc > 1:9635284/1‑35 (MQ=37) gTAAATGCCATCGAGGCTAGCT‑GTTTTTCCAtctc < 1:7560250/35‑1 (MQ=255) tAAATGCCATCGAGGCTAGCT‑GGTTTTTCCTctct > 1:16845881/1‑35 (MQ=25) aaaTGCCATCGAGGCTAGCT‑GTTTTTCCATCtctt < 1:5266843/35‑1 (MQ=255) aaaTGCCATCGAGGCTAGCT‑GTTTTTCCATCtctt < 1:8027981/35‑1 (MQ=255) aaTGCCATCGAGGCTAGCT‑GTTTTTCCATCtcttc < 1:6795284/35‑1 (MQ=255) aaTGCCATCGAGGCTAGCT‑GTTTTTCCATCtcttc < 1:9854508/35‑1 (MQ=255) aaTGCCATCGAGGCTAGCT‑GGTTTTCCCTTtcttc > 1:20009420/1‑35 (MQ=25) aTGCCATCGAGGCTAGCT‑GTTTTTCCATCtcttct < 1:3682272/35‑1 (MQ=255) aTGCCATCGAGGCTAGCT‑GTTTTTCCATCtcttct < 1:17928642/35‑1 (MQ=255) aTGCCATCGAGGCTAGCT‑GTTTTTCCATCtcttct < 1:6140740/35‑1 (MQ=255) aTGCCATCGAGGCTAGCT‑GGTTTTCCATCtcttct > 1:11675666/1‑35 (MQ=255) tGCCATCGAGGCTAGCT‑GTTTTTCCATCTCTTCTg < 1:3515067/35‑1 (MQ=255) tGCCATCGAGGCTAGCT‑GTTTTTCCATCTCTTCTg < 1:4277325/35‑1 (MQ=255) tGCCATCGAGGCTAGCT‑GTTTTTCCATCTCTTCTg < 1:12195471/35‑1 (MQ=255) tGCCATCGAGGCTAGCT‑GTTTTTCCATCTCTTCTg < 1:13194895/35‑1 (MQ=255) gCCATCGAGGCTAGCT‑GTTTTTCCATCTCTTCTGc < 1:16986387/35‑1 (MQ=255) gCCATCGAGGCTAGCT‑GTTTTTCCATCTCTTCTGc < 1:3359073/35‑1 (MQ=255) gCCATCGAGGCTAGCT‑GTTTTTCCATCTCTTCTGc < 1:12364402/35‑1 (MQ=255) gCCATCGAGGCTAGCT‑GTTTTTCCATCTCTTCTGc < 1:12618656/35‑1 (MQ=255) ccATCGATGCTAGCT‑GTTTTTCCATCTCTTCTGCa > 1:15515737/1‑35 (MQ=255) ccATCGAGGCTAGCT‑GTTTTTCCATCTCTTCTGCa < 1:2764232/35‑1 (MQ=255) cATCGAGGCTAGCT‑GTTTTTCCATCTCTTCTGCAc < 1:569029/35‑1 (MQ=255) cATCGAGGCTAGCT‑GTTTTTCCATCTCTTCTGCAc < 1:8436388/35‑1 (MQ=255) tCGAGGCTAGCT‑GTTTTTCCATCTCTTCTGCACGc < 1:4405416/35‑1 (MQ=255) tCGAGGCTAGCT‑GTTTTTCCATCTCTTCTGCACGc < 1:6996610/35‑1 (MQ=255) aGGCTAGCT‑GTTTTTCCATCTCTTCTGCACGCAGc < 1:13780913/35‑1 (MQ=255) aGGCTAGCT‑GTTTTTCCATCTCTTCTGCACGCAGc > 1:4446589/1‑35 (MQ=255) aGGCTAGCT‑GTTTTTCCATCTCTTCTGCACGCAGc > 1:13467119/1‑35 (MQ=255) ggCTAGCT‑GTTTTTCCATCTCTTCTGCACGCAgtg < 1:650527/35‑3 (MQ=255) ggCTAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCg < 1:16490459/35‑1 (MQ=255) ggCTAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCg < 1:7468238/35‑1 (MQ=255) gCTAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGa > 1:18586517/1‑35 (MQ=255) gCTAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGa < 1:18315138/35‑1 (MQ=255) gCTAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGa < 1:1605665/35‑1 (MQ=255) gCTAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGa < 1:4997963/35‑1 (MQ=255) gCTAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGa > 1:17057760/1‑35 (MQ=255) cTAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGaa < 1:10209989/35‑1 (MQ=255) tAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGaaa > 1:17852035/1‑35 (MQ=255) tAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGaaa > 1:1355071/1‑35 (MQ=255) tAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGaaa > 1:9226368/1‑35 (MQ=255) tAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGaaa > 1:1094360/1‑35 (MQ=255) aGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAt > 1:10110427/1‑35 (MQ=255) aGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAt > 1:9808289/1‑35 (MQ=255) aGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAt > 1:786690/1‑35 (MQ=255) aGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAt < 1:12871836/35‑1 (MQ=255) aGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAt > 1:494345/1‑35 (MQ=255) aGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAt > 1:4081450/1‑35 (MQ=255) aGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAt > 1:3275592/1‑35 (MQ=255) gCT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAtc > 1:3761557/1‑35 (MQ=255) gCT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAtc < 1:1046072/35‑1 (MQ=255) gCT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAtc > 1:14539157/1‑35 (MQ=255) cT‑GTTTTTCCATCTCTTCTGCACGCAGCTAAAtct > 1:5746862/1‑35 (MQ=255) cT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAtct > 1:7314419/1‑35 (MQ=255) cT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAtct > 1:11819370/1‑35 (MQ=255) cT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAtct > 1:11763977/1‑35 (MQ=255) cT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAtct > 1:4040413/1‑35 (MQ=255) cT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAtct < 1:1532989/35‑1 (MQ=255) cT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAtct > 1:19900583/1‑35 (MQ=255) t‑GTTTTTCCATCTCTTCTGCACGCAGCGAAAtctc > 1:13971969/1‑35 (MQ=255) | GCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCT‑GTTTTTCCATCTCTTCTGCACGCAGCGAAATCTC > REL606/378332‑378400 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |