New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422127 =69 (0.670)8 (0.120) 4/32 NT 15.8% coding (187/948 nt) cyoA cytochrome o ubiquinol oxidase subunit II
?REL606 4480474 = 39 (0.570)coding (497/1191 nt) intB predicted integrase

GCCTGATGTTGATTGTCGTTATTCCCGCAATCTTGATGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/422168‑422127
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggctgGGGCGGTTGCTTCCTGTAATCGACAACATCGT  >  REL606/4480474‑4480505
                                                                          
GCCTGATGTTGATTGTCGTTATTCCCGCAATCTTG                                         <  1:8173190/35‑1
GCCTGATGTTGATTGTCGTTATTCCCGCAATCTTG                                         >  1:15312225/1‑35
GCCTGATGTTGATTGTCGTTATTCCCGCAATCTTG                                         >  1:8544808/1‑35
GCCTGATGTTGATTGTCGTTATTCCCGCAATCTTG                                         >  1:12014579/1‑35
GCCTGATGTTGATTGTCGTTATTCCCGCAATCTTG                                         <  1:13421298/35‑1
GCCTGATGTTGATTGTCGTTATTCCCGCAATCTTG                                         <  1:12489604/35‑1
GCCTGATGTTGATTGTCGTTATTCCCGCAATCTTG                                         <  1:18238575/35‑1
 CCTGATGTTGATTGTCGTTATTCCCGCAATCTTGA                                        <  1:9291869/35‑1
 CCTGATGTTGATTGTCGTTATTCCCGCAATCTTGA                                        >  1:6792455/1‑35
 CCTGATGTTGATTGTCGTTATTCCCGCAATCTTGA                                        <  1:6510086/35‑1
  CTGATGTTGATTGTCGTTATTCCCGCAATCTTGAT                                       >  1:503834/1‑35
  CTGATGTTGATTGTCGTTATTCCCGCAATCTTGAT                                       >  1:16967861/1‑35
  CTGATGTTGATTGTCGTTATTCCCGCAATCTTGAT                                       >  1:2524626/1‑35
  CTGATGTTGATTGTCGTTATTCCCGCAATCTTGAT                                       >  1:12368503/1‑35
   TGATGTTGATTGTCGTTATTCCCTCAATCTTGATG                                      >  1:6980558/1‑35
   TGATGTTGATTGTCGTTATTCCCGCAATCTTGATG                                      >  1:18346776/1‑35
   TGATGTTGATTGTCGTTATTCCCGCAATCTTGATG                                      >  1:13121664/1‑35
    GATGTTGATTGTCGTTATTCCCGCAATCTTGATGG                                     <  1:17649347/35‑1
    GATGTTGATTGTCGTTATTCCCGCAATCTTGATGG                                     >  1:82029/1‑35
    GATGTTGATTGTCGTTATTCCCGCAATCTTGATGG                                     <  1:17565587/35‑1
    GATGTTGATTGTCGTTATTCCCGCAATCTTGATGG                                     <  1:16528189/35‑1
    GATGTTGATTGTCGTTATTCCCGCAATCTTGATGG                                     >  1:6642647/1‑35
    GATGTTGATTGTCGTTATTCCCGCAATCTTGATGG                                     <  1:11133009/35‑1
    GATGTTGATTGTCGTTATTCCCGCAATCTTGATGG                                     <  1:5349706/35‑1
    GATGTTGATTGTCGTTATTCCCGCAATCTTGATGG                                     >  1:4563999/1‑35
    GATGTTGATTGTCGTTATTCCCGCAATCTTGATGG                                     >  1:10185132/1‑35
    GATGTTGATTGTCGTTATTCCCGCAATCTTGATGG                                     <  1:10074659/35‑1
    GATGTTGATTGTCGTTATTCCCGCAATCTTGATGG                                     >  1:4579439/1‑35
     ATGTTGATTGTCGTTATTCCCGCAATCTTGATGGC                                    >  1:20201259/1‑35
     ATGTTGATTGTCGTTATTCCCGCAATCTTGATGGC                                    <  1:3250984/35‑1
     ATGTTGATTGTCGTTATTCCCGCAATCTTGATGGC                                    <  1:10018044/35‑1
     ATGTTGATTGTCGTTATTCCCGCAATCTTGATGGC                                    >  1:12222662/1‑35
     ATGTTGATTGTCGTTATTCCCGCAATATTGATGGC                                    <  1:10641292/35‑1
     ATGTTGATTGACGTTATTCCCGCAATCTTGATGGC                                    >  1:17604277/1‑35
      TGTTGATTGTCGTTATTCCCGCAATCTTGATGGCT                                   >  1:11924007/1‑35
      TGTTGATTGTCGTTATTCCCGCAATCTTGATGGCT                                   >  1:8472934/1‑35
      TGTTGATTGTCGTTATTCCCGCAATCTTGATGGCT                                   >  1:14682259/1‑35
      TGTTGATTGTCGTTATTCCCGCAATCTTGATGGCT                                   >  1:7743507/1‑35
      TGTTGATTGTCGTTATTCCCGCAATCTTGATGGCT                                   >  1:7177949/1‑35
      TGTTGATTGTCGTTATTCCCGCAATCTTGATGGCT                                   <  1:15817375/35‑1
      TGTTGATTGTCGTTATTCCCGCAATCTTGATGGCT                                   <  1:7021899/35‑1
       GTTGATTGTCGTTATTCCCGCAATCTTGATGGCTG                                  <  1:4403221/35‑1
       GTTGATTGTCGTTATTCCCGCAATCTTGATGGCTG                                  <  1:3108741/35‑1
       GTTGATTGTCGTTATTCCCGCAATCTTGATGGCTG                                  <  1:6443620/35‑1
       GTTGATTGTCGTTATTCCCGCAATCTTGATGGCTG                                  <  1:19928724/35‑1
       GTTGATTGTCGTTATTCCCGCAATCTTGATGGCTG                                  >  1:15252426/1‑35
       GTTGATTGTCGTTATTCCCGCAATCTTGATGGCTG                                  >  1:12665964/1‑35
       GTTGATTGTCGTTATTCCCGCAATCTTGATGGCTG                                  <  1:14542898/35‑1
        TTGATTGTCGTTATTCCCGCAATCTTGATGGCTGG                                 >  1:10315029/1‑35
        TTGATTGTCGTTATTCCCGCAATCTTGATGGCTGG                                 >  1:442479/1‑35
        TTGATTGTCGTTATTCCCGCAATCTTGATGGCTGG                                 >  1:15279353/1‑35
        TTGATTGTCGTTATTCCCGCAATCTTGATGGCTGG                                 >  1:16716276/1‑35
        TTGATTGTCGTTATTCCCGCAATCTTGATGGCTGG                                 >  1:659408/1‑35
        TTGATTGTCGTTATTCCCGCAATCTTGATGGCTGG                                 >  1:6552802/1‑35
         TGATTGTCGTTATTCCCGCAATCTTGATGGCTtgt                                >  1:20318266/1‑32
         TGATTGTCGTTATTCCCGCAATCTTGATGGCTGGG                                >  1:6236969/1‑35
         TGATTGTCGTTATTCCCGCAATCTTGATGGCTGGG                                >  1:13461869/1‑35
         TGATTGTCGTTATTCCCGCAATCTTGATGGCTGGG                                >  1:8979982/1‑35
          GATTGTCGTTATTCCCGCAATCTTGATGGCTGGGG                               >  1:584637/1‑35
          GATTGTCGTTATTCCCGCAATCTTGATGGCTGGGG                               >  1:11324810/1‑35
          GATTGTCGTTATTCCCGCAATCTTGATGGCTGGGG                               >  1:10895186/1‑35
          GATTGTCGTTATTCCCGCAATCTTGATGGCTGGGG                               >  1:15346050/1‑35
           ATTGTCGTTATTCCCGCAATCTTGATGGCTGGGGg                              >  1:5742913/1‑34
           ATTGTCGTTATTCCCGCAATCTTGATGGCTGGGGg                              >  1:3343076/1‑34
           ATTGTCGTTATTCCCGCAATCTTGATGGCTGGGGg                              >  1:2749446/1‑34
           ATTGTCGTTATTCCCGCAATCTTGATGGCTGGGGg                              >  1:15233919/1‑34
           ATTGTCGTTATTCCCGCAATCTTGATGGCTGGGGg                              >  1:15392298/1‑34
           ATTGTCGTTATTCCCGCAATCTTGATGGCTGGGGg                              >  1:19136938/1‑34
           ATTGTCGTTATTCCCGCAATCTTGATGGCTGGGGg                              >  1:18384973/1‑34
           ATTGTCGTTATTCCCGCAATCTTGATGGCTGGGGg                              >  1:16785081/1‑34
            TTGTCGTTATTCCCGCAATCTTGATGGCTGGGGgg                             >  1:2950493/1‑33
            TTGTCGTTATTCCCGCAATCTTGATGGCTGGGGgg                             >  1:6131121/1‑33
            TTGTCGTTATTCCCGCAATCTTGATGGCTGGGGgg                             >  1:8680921/1‑33
            TTGTCGTTATTCCCGCAATCTTGATGGCTGGGGgg                             >  1:2641005/1‑33
            TTGTCGTTATTCCCGCAATCTTGATGGCTGGGGgg                             >  1:1885167/1‑33
             TGTCGTTATTCCCGCAATCTTGATGGCTGGGGggt                            >  1:18563728/1‑32
             TGTCGTTATTCCCGCAATCTTGATGGCTGGGGggt                            >  1:16350274/1‑32
              GTCGTTATTCCCGCAATCTTGATGGCTGGGGGGGT                           >  1:8049433/1‑35
               TCGTTATTCCCGCAATCTTGATGGCTGGGGGGGTg                          >  1:9780545/1‑34
               TCGTTATTCCCGCAATCTTGATGGCTGGGGGGGTT                          >  1:20179805/1‑35
               TCGTTATTCCCGCAATCTTGATGGCTGGGGGGGTT                          >  1:3376620/1‑35
                CGTTATTCCCGCAATCTTGATGGCTGGGGGGGTTG                         >  1:616367/1‑35
                 GTTATTCCCGCAATCTTGATGGCTGGGGGGGTTGg                        >  1:6237070/1‑34
                 GTTATTCCCGCAATCTTGATGGCTGGGGGGGTTGC                        >  1:16715812/1‑35
                 GTTATTCCCGCAATCTTGATGGCTGGGGGGGTTGC                        >  1:15946991/1‑35
                                    TGGCTGGGGCGGTTGCTTCCTGTAATCGACAACAT     <  1:6692275/35‑1
                                    TGGCTGGGGCGGTTGCTTCCTGTAATCGACAACAT     <  1:1872209/35‑1
                                    TGGCTGGGGCGGTTGCTTCCTGTAATAGACAACAT     <  1:1435247/35‑1
                                     GGCTGGGGCGGTTGCTTCCTGTAATAGACAACATC    <  1:11065160/35‑1
                                      GCTGGGGCGGTTGCTTCCTGTAATCGACAACATCG   <  1:13848248/35‑1
                                      GCTGGGGCGGTTGCTTACTGTAATCGACAACATCG   <  1:7191091/35‑1
                                       CTGGGGCGGTTGCTTCCTGTAATCGACAACATCGT  <  1:7134872/35‑1
                                       CTGGGGCGGTTGCTTCCTGTAATCGACAACATCGT  <  1:12637170/35‑1
                                                                          
GCCTGATGTTGATTGTCGTTATTCCCGCAATCTTGATGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/422168‑422127
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggctgGGGCGGTTGCTTCCTGTAATCGACAACATCGT  >  REL606/4480474‑4480505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.