New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2183026 =73 (0.710)12 (0.160) 5/34 NT 15.2% intergenic (+74/‑56) yohK/cdd predicted inner membrane protein/cytidine deaminase
?REL606 = 3512380 82 (1.130)intergenic (‑122/‑211) yhhX/yhhY predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase

Only 100 of 184 total aligned reads displayed.

TCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGA  >  REL606/3512346‑3512414
                                  |                                  
tCCCGTGGATAAATTGAGAACGAAAGATCaaaaaa                                    <  1:3711773/35‑1 (MQ=255)
 cccGTGGATAAATTGAGATCGAAAGATCAAAAAAa                                   >  1:19745571‑M2/1‑34 (MQ=255)
 cccGTGGATAAATTGAGAACGAAAGATCAAAAAAa                                   >  1:2770833‑M2/1‑34 (MQ=255)
 cccGTGGATAAATTGAGAACGAAAGATCAAAAAAa                                   <  1:9487265‑M2/35‑2 (MQ=255)
 cccGTGGATAAATTGAGAACGAAAGATCAAAAAAa                                   >  1:19402635‑M2/1‑34 (MQ=255)
 cccGTGGATAAATTGAGAACGAAAGATCAAAAAAa                                   <  1:19330174‑M2/35‑2 (MQ=255)
  ccGTGGATAAATTGAGAACGAAAGATCAAAAAAaa                                  <  1:5160531‑M2/35‑3 (MQ=255)
   cGTGGATAAATTGAGAACGAAAGATCAAAAAAaaa                                 <  1:20053322‑M2/35‑4 (MQ=255)
   cGTGGATAAATTGAGAACGAAAGATCAAAAAAaaa                                 >  1:4118029‑M2/1‑32 (MQ=255)
   cGTGGATAAATTGAGAACGAAAGATCAAAAAAaaa                                 >  1:11692822‑M2/1‑32 (MQ=255)
   cGTGGATAAATTGAGAACGAAAGATCAAAAAAaaa                                 >  1:16434492‑M2/1‑32 (MQ=255)
    gTGGATAAATTGAGAACGAAAGATCAAAAAAaaag                                >  1:6123365‑M2/1‑31 (MQ=255)
    gTGGATAAATTGAGAACGAAAGATCAAAAAAaaag                                <  1:16028015‑M2/35‑5 (MQ=255)
     tGGATAAATTGAGAACGAAAGATCAAAAAAaaagc                               >  1:16714711‑M2/1‑30 (MQ=255)
     tGGATAAATTGAGAACGAAAGATCAAAAAAaaagc                               >  1:7777932‑M2/1‑30 (MQ=255)
     tGGATAAATTGAGAACGAAAGATCAAAAAAaaaga                               <  1:2797749‑M2/35‑6 (MQ=255)
       gATAAATTGAGAACGAAAGATCAAAAAAaaagcca                             >  1:11777784‑M2/1‑28 (MQ=255)
       gATAAATTGAGAACGAAAGATCAAAAAAaaagcca                             <  1:15057371‑M2/35‑8 (MQ=255)
        aTAAATTGAGAACGAAAGATCAAAAAAAAAGCCAg                            <  1:11375/35‑1 (MQ=255)
        aTAAATTGAGAACGAAAGATCAAAAAAAAAGCCAg                            <  1:15188876/35‑1 (MQ=255)
         tAAATTGAGAACGAAAGATAAAAAAAAAAGCCAGc                           <  1:8277930/35‑1 (MQ=255)
          aaaTTGAGAACGAAAGATCAAAAAAAAAGCCAGCa                          >  1:17596989/1‑35 (MQ=255)
           aaTTGAGAACGAAAGATCAAAAAAAAAGCCAGCAc                         >  1:3890747/1‑35 (MQ=255)
             ttGAGAACGAAAGATCAAAAAAAAAGCCAGCAccc                       >  1:9285083/1‑35 (MQ=255)
             ttGAGAACGAAAGATCAAAAAAAAAGCCAGCAccc                       >  1:3509635/1‑35 (MQ=255)
             ttGAGAACGAAAGATCAAAAAAAAAGCCAGCAccc                       <  1:17648895/35‑1 (MQ=255)
               gagaACGAAAGATCAAAAAAAAAGCCAGCACCCgg                     <  1:13910020/35‑1 (MQ=255)
               gagaACGAAAGATCAAAAAAAAAGCCAGCACCCgg                     >  1:13509662/1‑35 (MQ=255)
               gagaACGAAAGATCAAAAAAAAAGCCAGCACCCgg                     >  1:6033769/1‑35 (MQ=255)
               gagaACGAAAGATC‑‑AAAAAAACCCAGCACCCggct                   >  1:4963461/1‑35 (MQ=21)
                agaACGAAAGATCAAAAAAAAAGCCAGCACCCggc                    >  1:7805705/1‑35 (MQ=255)
                agaACGAAAGATCAAAAAAAAAGCCAGCACCCggc                    >  1:16040903/1‑35 (MQ=255)
                 gaACGAAAGATCAAAAAAAAGCCAGCACCCggctg                  >  1:19065318/1‑35 (MQ=37)
                  aaCGAAAGATCAAAAAAAAAGCCAGCACCCggctg                  <  1:1042896/35‑1 (MQ=255)
                  aaCGAAAGATCAAAAAAAAAGCCAGCACCCggctg                  >  1:9547634/1‑35 (MQ=255)
                  aaCGAAAGATCAAAAAAAAAGCCAGCACCCggctg                  >  1:16346268/1‑35 (MQ=255)
                  aaCGAAAGATCAAAAAAAAAGCCAGCACCCggctg                  <  1:8543754/35‑1 (MQ=255)
                  aaCGAAAGATCAAAAAAAAAGCCAGCACCCggctg                  >  1:17156193/1‑35 (MQ=255)
                  aaCGAAAGACCAAAAAAAAAGCCAGCACCCggctg                  <  1:5939194/35‑1 (MQ=255)
                   acaaaaGAGCAAAAAAAAAGCCAGCACCCggctgg                 <  1:12974722/32‑1 (MQ=37)
                   aCGAAAGATCAAAAAAAAAGCCAGCACCCggctgg                 >  1:3641319/1‑35 (MQ=255)
                   aCGAAAGATCAAAAAAAAAGCCAGCACCCggctgg                 >  1:10141655/1‑35 (MQ=255)
                    cGAAAGATCAAAAAAAAAGCCAGCACCCggctggc                >  1:8646906/1‑35 (MQ=255)
                    cGAAAGATCAAAAAAAAAGCCAGCACCCggctggc                >  1:4496415/1‑35 (MQ=255)
                     gAAAGATCAAAAAAAAAGCCAGCACCCggctggct               >  1:9072710/1‑35 (MQ=255)
                     gAAAGATCAAAAAAAAAGCCAGCACCCggctggct               >  1:6231493/1‑35 (MQ=255)
                      taagACCAAAAAAaaagccacaacgggttcgtaaa              >  1:7269684‑M2/2‑13 (MQ=255)
                      aaaGATCAAAAAAAAAGCCAGCACCCGGCTGGCTa              >  1:7950189/1‑35 (MQ=255)
                       caaatcaAAAAAaaagccacaacgggttcgtaaac             >  1:17808384‑M2/4‑12 (MQ=255)
                       aaGATCAAAAAAAAAGCCAGCACCCGGCTGGCTaa             <  1:7679377/35‑1 (MQ=255)
                        aGATCACAAAAaaagccacaacgggttcgtaaact            >  1:7287443‑M2/1‑11 (MQ=255)
                        aGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAg            <  1:12516241/35‑1 (MQ=255)
                        aGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAg            <  1:7805209/35‑1 (MQ=255)
                        aGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAg            <  1:13602431/35‑1 (MQ=255)
                         gATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAgc           >  1:18532008/1‑34 (MQ=255)
                         gATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGt           <  1:16910148/35‑1 (MQ=255)
                         gATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGt           >  1:11997802/1‑35 (MQ=255)
                         gATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGt           <  1:4079588/35‑1 (MQ=255)
                         gATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGt           >  1:7552749/1‑35 (MQ=255)
                         gATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGt           >  1:149099/1‑35 (MQ=255)
                          aTCAAAAAAaaagccacaacgggttcgtaaactgt          >  1:4710806‑M2/1‑9 (MQ=255)
                          aTCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTa          <  1:971991/35‑1 (MQ=255)
                           tCACAAAAaaagccacaacgggttcgtaaactgtt         >  1:10940642‑M2/1‑8 (MQ=255)
                           tCAAATAAaaagccacaacgggttcgtaaactgtt         >  1:17592800‑M2/1‑8 (MQ=255)
                           tCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTaa         >  1:20579064/1‑35 (MQ=255)
                           tCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTaa         <  1:6651179/35‑1 (MQ=255)
                            cAAAAAAaaagccacaacgggttcgtaaactgtta        >  1:5139475‑M2/1‑7 (MQ=255)
                            cAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAAt        >  1:10319368/1‑35 (MQ=255)
                            aacaaaaaaagccacaacgggttcgtaaactgtta        >  1:6497796‑M2/4‑7 (MQ=255)
                             cagaaaaaagccataaagaatgatacccagacgta       >  1:1078202‑M2/4‑7 (MQ=255)
                             aagaaaaaagccataaagaatgatacccagacgta       >  1:17402799‑M2/1‑7 (MQ=255)
                             aaaaaaaaagccacaacgggttcgtaaactgttat       >  1:17182702‑M2/1‑6 (MQ=255)
                             aaaaaaaaaGCCAGCACCCGGCTGGCTAAGTAATa       <  1:15008667/35‑1 (MQ=255)
                             aaaaaaaaaGCCAGCACCCGGCTGGCTAAGTAATa       >  1:10463403/1‑35 (MQ=255)
                              aaaaaaaagccataaagaatgatacccagacgtaa      >  1:133325‑M2/1‑6 (MQ=255)
                              aaaaaaaaGCCAGCACCCGGCTGGCTAAGTAATAc      <  1:10908870/35‑1 (MQ=255)
                               gaagaaagccataaagaatgatacccagacgtaat     >  1:2462102‑M2/2‑5 (MQ=255)
                               aaaaaaagccataaagaatgatacccagacgtaat     >  1:14256175‑M2/1‑5 (MQ=255)
                               aaaaaaagccacaacgggttcgtaaactgttatcc     >  1:12334072‑M2/1‑4 (MQ=255)
                               aaaaaaagccacaacgggttcgtaaactgttatcc     >  1:15467329‑M2/1‑4 (MQ=255)
                               aaaaaaagccacaacgggttcgtaaactgttatcc     >  1:18687608‑M2/1‑4 (MQ=255)
                               aaaaaaaGCCAGCACCCGGCTGGCTAAGTAATACt     <  1:17047323/35‑1 (MQ=255)
                                taaaaagccacaacgggttcgtaaactgttatccc    >  1:1496584‑M2/2‑3 (MQ=255)
                                gaaaaagccataaagaatgatacccagacgtaata    >  1:1320746‑M2/2‑4 (MQ=255)
                                aaaaaagccataaagaatgatacccagacgtaata    >  1:8055474‑M2/1‑4 (MQ=255)
                                aaaaaagccacaacgggttcgtaaactgttatccc    >  1:4380870‑M2/1‑3 (MQ=255)
                                aaaaaaGCCAGCACCCGGCTGGCTAAGTAATACTg    <  1:7409516/35‑1 (MQ=255)
                                aaaaaaGCCAGCACCCGGCTGGCTAAGTAATACTg    <  1:16546701/35‑1 (MQ=255)
                                aaaaaaGCCAGCACCCGGCTGGCTAAGTAATACTg    >  1:8788357/1‑35 (MQ=255)
                                 aaaaagccataaagaatgatacccagacgtaataa   >  1:19541059‑M2/1‑3 (MQ=255)
                                 aaaaagccacaacgggttcgtaaactgttatccca   >  1:17527816‑M2/1‑2 (MQ=255)
                                 aaaaagccacaacgggttcgtaaactgttatccca   >  1:14660304‑M2/1‑2 (MQ=255)
                                 aaaaaGCCAGCACCCGGCTGGCTAAGTAATACTgg   <  1:12866709/35‑1 (MQ=255)
                                 aaaaaGCCAGCACCCGGCTGGCTAAGTAATACTgg   >  1:19890250/1‑35 (MQ=255)
                                  aaaagccataaagaatgatacccagacgtaataaa  >  1:537652‑M2/1‑2 (MQ=255)
                                  aaaagccacaacgggttcgtaaactgttatcccat  >  1:15918728‑M2/1‑1 (MQ=255)
                                  aaaaGCCAGCACCCGGCTGGCTAAGTAATACTGGa  >  1:10085472/1‑35 (MQ=255)
                                  aaaaGCCAGCACCCGGCTGGCTAAGTAATACTGGa  <  1:15637474/35‑1 (MQ=255)
                                  aaaaGCCAGCACCCGGCTGGCTAAGTAATACTGGa  >  1:18790987/1‑35 (MQ=255)
                                  aaaaGCCAGCACCCGGCTGGCTAAGTAATACTGGa  <  1:202826/35‑1 (MQ=255)
                                  |                                  
TCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGA  >  REL606/3512346‑3512414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.