New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1924962 =56 (0.540)10 (0.100) 4/48 NT 12.3% intergenic (‑216/‑59) ruvA/yebB Holliday junction DNA helicase motor protein/hypothetical protein
?REL606 = 2078183 86 (0.840)coding (1712/3306 nt) yegE predicted diguanylate cyclase, GGDEF domain signalling protein

Only 100 of 102 total aligned reads displayed.

AAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTCG  >  REL606/1924928‑1924996
                                  |                                  
aaaTGCGTAATAAAAATATACATTGCGCCTCCTGa                                    >  1:14114372/1‑35 (MQ=255)
aaaTGCGTAATAAAAATATACATTGCGCCTCCTGa                                    >  1:9482200/1‑35 (MQ=255)
aaaTGCGTAATAAAAATATACATTGCGCCTCCTGa                                    <  1:1749997/35‑1 (MQ=255)
aaaTGCGTAATAAAAATATACATTGCGCCTCCTGa                                    <  1:16513399/35‑1 (MQ=255)
aaaTGCGTAATAAAAATATACATTGCGCCTCCTGa                                    >  1:2199191/1‑35 (MQ=255)
aaaTGCGTAATAAAAATATACATTGCGCCTCCTGa                                    <  1:17164633/35‑1 (MQ=255)
aaaTGCGTAATAAAAATATACATTGCGCATCCTGa                                    <  1:12648738/35‑1 (MQ=255)
 aaTGCGTAATAAAAATATACATTGCGCCTCCTGaa                                   <  1:9351409/35‑1 (MQ=255)
 aaTGCGTAATAAAAATATACATTGCGCCTCCTGaa                                   <  1:6466284/35‑1 (MQ=255)
 aaTGCGTAATAAAAATATACATTGCGCCTCCTGaa                                   <  1:7623276/35‑1 (MQ=255)
 aaTGCGTAATAAAAATATACATTGCGCCTCCTGaa                                   >  1:2413908/1‑35 (MQ=255)
  ggtgaagccgtggtctgtattgatatggcgaaaaa                                  <  1:14541309‑M1/3‑1 (MQ=255)
  ggtgaagccgtggtctgtattgatatggcgaaaaa                                  <  1:17291426‑M1/3‑1 (MQ=255)
  aTGCGTAATAAAAATATACATTGCGCCTCCTGaaa                                  >  1:17268575/1‑35 (MQ=255)
  aTGCGTAATAAAAATATACATTGCGCCTCCTGaaa                                  <  1:3607079/35‑1 (MQ=255)
  aTGCGTAATAAAAATATACATTGCGCCTCCTGaaa                                  >  1:17548449/1‑35 (MQ=255)
  aTGCGTAATAAAAATATACATTGCGCCTCCTGaaa                                  >  1:15741345/1‑35 (MQ=255)
   tGCGTAATAAAAATATACATTGCGCCTCCTGaaaa                                 >  1:15087760/1‑35 (MQ=255)
   gtgaagccgtggtctgtattgatatggcgaaaaaa                                 <  1:8758845‑M1/4‑1 (MQ=255)
    tgaagccgtggtctgtattgatatggcgaaaaaaa                                <  1:18675770‑M1/5‑1 (MQ=255)
    gCGTAATAAAAATATACATTGCGCCTCCTGaaaaa                                <  1:17128826/35‑1 (MQ=255)
     gaagccgtggtctgtattgatatggcgaaaaaaaa                               <  1:4540234‑M1/6‑1 (MQ=255)
     gaagccgtggtctgtattgatatggcgaaaaaaaa                               <  1:18501860‑M1/6‑1 (MQ=255)
     gaagccgtggtctgtattgatatggcgaaaaaaaa                               <  1:14781394‑M1/6‑1 (MQ=255)
     cGTAATAAAAATATACATTGCGCCTCCTGaaaaaa                               >  1:14882452/1‑35 (MQ=255)
     cGTAATAAAAATATACATTGCGCCTCCTGaaaaaa                               >  1:10528585/1‑35 (MQ=255)
     cGTAATAAAAATATACATTGCGCCTCCTGaaaaaa                               <  1:5382785/35‑1 (MQ=255)
     cGTAATAAAAATATACATTGCGCCTCCTGaaaaaa                               >  1:20227188/1‑35 (MQ=255)
     cGTAATAAAAATATACATTGCGCCTCCTGaaaaaa                               >  1:1208299/1‑35 (MQ=255)
      gTAATAAAAATATACATTGCGCCTCCTGAAAaaat                              <  1:3617496/35‑1 (MQ=255)
      gTAATAAAAATATACATTGCGCCTCCTGAAAaaat                              >  1:12282217/1‑35 (MQ=255)
      aagccgtggtctgtattgatatggcgaaaaaaaaa                              <  1:11169321‑M1/7‑2 (MQ=255)
       taataaAAATATACATTGCGCCTCCTGAAAaaata                             >  1:20112799/1‑35 (MQ=255)
       agccgtggtctgtattgatatggcgaaAAAaaata                             <  1:14398271‑M1/8‑1 (MQ=255)
        aataaAAATATACATTGCGCCTCCTGAAAaaataa                            <  1:8750760/35‑1 (MQ=255)
         ccgtggtctgtattgatatggcgaaAAaaaataac                           <  1:4708753‑M1/10‑2 (MQ=255)
         ataaAAATATACATTGCGCCTCCTGAAAaaataaa                           >  1:11992179/1‑35 (MQ=255)
          taaAAATATACATTGCGCCTCCTGAAAaaataaat                          <  1:5307012/35‑1 (MQ=255)
          cgtggtctgtattgatatggcgaaAAaaaataaac                          <  1:10485714‑M1/11‑2 (MQ=255)
           gtggtctgtattgatatggcgaaAAAAAATAAAtt                         <  1:19771840‑M1/12‑1 (MQ=255)
           aaaaaTATACATTGCGCCTCCTGAAAAAATAAAtt                         <  1:6867938/35‑1 (MQ=255)
            aaaaTATACATTGCGCCTCCTGAAAAAATAAAttt                        >  1:11884746/1‑35 (MQ=255)
            aaaaTATACATTGCGCCTCCTGAAAAAATAAAttt                        >  1:12096940/1‑35 (MQ=255)
             ggtctgtattgatatggcgaaAAAAAATAAAtttt                       <  1:3755659‑M1/14‑1 (MQ=255)
             aaaTATACATTGCGCCTCCTGAAAAAATAAAtttt                       >  1:11370744/1‑35 (MQ=255)
             aaaTATACATTGCGCCTCCTGAAAAAATAAAtttt                       >  1:4617573/1‑35 (MQ=255)
              aaTATACATTGCGCCTCCTGAAAAAATAAAttttt                      <  1:7249995/35‑1 (MQ=255)
               atatACATTGCGCCTCCTGAAAAAATAAAtttttt                     <  1:19079404/35‑1 (MQ=255)
               atatACATTGCGCCTCCTGAAAAAATAAAtttttt                     >  1:15484846/1‑35 (MQ=255)
               atatACATTGCGCCTCCTGAAAAAATAAAtttttt                     >  1:15874085/1‑35 (MQ=255)
                tataCATTGCGCCTCCTGAAAAAATAAATTTTTTa                    <  1:13723001/35‑1 (MQ=255)
                 ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt                   <  1:12133238/35‑1 (MQ=255)
                 ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt                   <  1:8533865/35‑1 (MQ=255)
                 ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt                   <  1:18464955/35‑1 (MQ=255)
                 ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt                   >  1:8465776/1‑35 (MQ=255)
                 ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt                   >  1:13038311/1‑35 (MQ=255)
                 ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt                   >  1:14947933/1‑35 (MQ=255)
                 ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt                   >  1:16267587/1‑35 (MQ=255)
                 ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt                   >  1:2383418/1‑35 (MQ=255)
                   aCATTGCGCCTCCTGAAAAAATAAATTTTTTATGc                 <  1:18573750/35‑1 (MQ=255)
                    cATTGCGCCTCCTGAAAAAATAAATTTTTTATGCt                >  1:16981463/1‑35 (MQ=255)
                     aTTGCGCCTCCTGAAAAAATAAATTTTTTATGCTa               >  1:17266419/1‑35 (MQ=255)
                     aTTGCGCCTCCTGAAAAAATAAATTTTTTATGCTa               >  1:547602/1‑35 (MQ=255)
                     aTTGCGCCTCCTGAAAAAATAAATTTTTTATGCTa               <  1:19598581/35‑1 (MQ=255)
                     aTTGCGCCTCCTGAAAAAATAAATTTTTTATGCTa               >  1:17454409/1‑35 (MQ=255)
                     aTTGCGCCTCCTGAAAAAATAAATTTTTTATGCTa               <  1:15608624/35‑1 (MQ=255)
                     aTTGCGCCTCCTGAAAAAATAAATTTTTTATGCTa               <  1:8231403/35‑1 (MQ=255)
                     aTTGCACCTCCTGAAAAAATAAATTTTTTATGCTa               >  1:6817701/1‑35 (MQ=255)
                      ttGCGCCTCCTGAAAAAATAAATTTTTTATGCTAt              >  1:7884283/1‑35 (MQ=255)
                       tGCGCCTCCTGAAAAAATAAATTTTTTATGCTAtt             >  1:8292269/1‑35 (MQ=255)
                        gcgcCTCCTGAAAAAATAAATTTTTTATGCTATTa            <  1:11105253/35‑1 (MQ=255)
                         cgcCTCCTGAAAAAATAAATTTTTTATGCTATTAc           <  1:6777026/35‑1 (MQ=255)
                         cgcCTCCTGAAAAAATAAATTTTTTATGCTATTAc           <  1:5545035/35‑1 (MQ=255)
                         cgcCTCCTGAAAAAATAAATTTTTTATGCTATTAc           <  1:11808909/35‑1 (MQ=255)
                         cgcCTCCTGAAAAAATAAATTTTTTATGCTATTAc           <  1:20299177/35‑1 (MQ=255)
                         cgcCTCCTGAAAAAATAAATTTTTTATGCTATTAc           <  1:9531871/35‑1 (MQ=255)
                          gcCTCCTGAAAAAATAAATTTTTTATGCTATTACg          >  1:2998830/1‑35 (MQ=255)
                          gcCTCCTGAAAAAATAAATTTTTTATGCTATTACg          <  1:6359161/35‑1 (MQ=255)
                          gcCTCCTGAAAAAATAAATTTTTTATGCTATTACg          <  1:13220597/35‑1 (MQ=255)
                           cctcctGAAAAAATAAATTTTTTATGCTATTACGt         <  1:18238268/35‑1 (MQ=255)
                           cctcctGAAAAAATAAATTTTTTATGCTATTACGt         >  1:9293846/1‑35 (MQ=255)
                           cctcctGAAAAAATAAATTTTTTATGCTATTACGt         >  1:13311446/1‑35 (MQ=255)
                           ccgcctGAAAAAATAAATTTTTTATGCTATTACGt         <  1:19538851/32‑1 (MQ=255)
                            ctcctGAAAAAATAAATTTTTTATGCTATTACGta        <  1:7406314/35‑1 (MQ=255)
                            ctcctGAAAAAATAAATTTTTTATGCTATTACGta        <  1:7372026/35‑1 (MQ=255)
                            ctcctGAAAAAATAAATTTTTTATGCTATTACGta        >  1:13669237/1‑35 (MQ=255)
                             tcctGAAAAAATAAATTTTTTATGCTATTACGtat       <  1:5130552/35‑1 (MQ=255)
                             tcctGAAAAAATAAATTTTTTATGCTATTACGtat       >  1:17395945/1‑35 (MQ=255)
                             tcctGAAAAAATAAATTTTTTATGCTATTACGtat       <  1:2707120/35‑1 (MQ=255)
                              cctGAAAAAATAAATTTTTTATGCTATTACGtata      >  1:13713199/1‑35 (MQ=255)
                              cctGAAAAAATAAATTTTTTATGCTATTACGtata      >  1:19977642/1‑35 (MQ=255)
                              cctGAAAAAATAAATTTTTTATGCTATTACGtata      <  1:2041785/35‑1 (MQ=255)
                                tGAAAAAATAAATTTTTTATGCTATTACGTATAtt    >  1:13793101/1‑35 (MQ=255)
                                 gAAAAAATAAATTTTTTATGCTATTACGTATATTc   >  1:18932072/1‑35 (MQ=255)
                                  aaaaaaTAAATTTTTTATGCTATTACGTATATTCg  <  1:7442916/35‑1 (MQ=255)
                                  aaaaaaTAAATTTTTTATGCTATTACGTATATTCg  >  1:7919287/1‑35 (MQ=255)
                                  aaaaaaTAAATTTTTTATGCTATTACGTATATTCg  >  1:4955114/1‑35 (MQ=255)
                                  aaaaaaTAAATTTTTTATGCTATTACGTATATTCg  <  1:19503020/35‑1 (MQ=255)
                                  aaaaaaTAAATTTTTTATGCTATTACGTATATTCg  <  1:2281139/35‑1 (MQ=255)
                                  aaaaaaTAAATTTTTTATGCTATTACGTATATTCg  >  1:10969563/1‑35 (MQ=255)
                                  |                                  
AAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTCG  >  REL606/1924928‑1924996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.