New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 672796 | 79 (0.770) | 10 (0.150) | 3/32 | NT | 16.4% | coding (181/1539 nt) | lnt | apolipoprotein N‑acyltransferase |
? | REL606 | 1048881 = | 49 (0.720) | intergenic (‑78/‑349) | serT/hyaA | tRNA‑Ser/hydrogenase 1, small subunit |
CAGTTAATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/672756‑672796 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaaaAGTGCATTGATAGCGTGAAATAACAGCAGATTGA > REL606/1048881‑1048914 CAGTTAATACCGCTGCCAAAGAGACCAAATCCCCA > 1:15195246/1‑35 CAGTTAATACCGCTGCCAAAGAGACCAAATCCCCA > 1:14615106/1‑35 CAGTTAATACCGCTGCCAAAGAGACCAAATCCCCA > 1:726140/1‑35 AGTTAATCCCGCTGCCAAAGAGACCAAATCCCCAG < 1:17431554/35‑1 AGTTAATCCCGCTGCCAAAGAGACCAAATCCCCAG < 1:15033776/35‑1 AGTTAATCCCGCTGCCAAAGAGACCAAATCCCCAG < 1:20502618/35‑1 AGTTAATCCCGCTGCCAAAGAGACCAAATCCCCAG < 1:20117294/35‑1 AGTTAATACCGCTGCCAAAGAGACCAAATCCCCAG > 1:2319807/1‑35 AGTTAATACCGCTGCCAAAGAGACCAAATCCCCAG > 1:9269956/1‑35 tTTAATCCCGCTGCCAAAGAGACCAAATCCCCAGC < 1:1639771/34‑1 GTTAATCCCGCTGCCAAAGAGACCAAATCCCCAGC < 1:7760351/35‑1 GTTAATCCCGCTGCCAAAGAGACCAAATCCCCAGC < 1:19992535/35‑1 TTAATCCCGCTGCCAAAGAGACCAAATCCCCAGCC < 1:12276106/35‑1 TTAATCCCGCTGCCAAAGAGACCAAATCCCCAGCC < 1:17918555/35‑1 TTAATACCGCTGCCAAAGAGACCAAATCCCCAGCC > 1:8629162/1‑35 TTAATACCGCTGCCAAAGAGACCAAATCCCCAGCC > 1:6943202/1‑35 aAATCCCGCTGCCAAAGAGACCAAATCCCCAGCCA < 1:13269353/34‑1 TAATACCGCTGCCAAAGAGACCAAATCCCCAGCCA > 1:475795/1‑35 AATCCCGCTGCCAAAGAGACCAAATCCCCAGCCAA < 1:1810846/35‑1 AATCCCGCTGCCAAAGAGACCAAATCCCCAGCCAA < 1:9583570/35‑1 AATCCCGCTGCCAAAGAGACCAAATCCCCAGCCAA < 1:10108440/35‑1 atcCCGCTGCCAAAGAGACCAAATCCCCAGCCAAA < 1:19256846/32‑1 accCCGCTGCCAAAGAGACCAAATCCCCAGCCAAA < 1:5689657/32‑1 accCCGCTGCCAAAGAGACCAAATCCCCAGCCAAA < 1:2743425/32‑1 ATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA > 1:588896/1‑35 ATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA > 1:7065226/1‑35 ATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA > 1:4230158/1‑35 ATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA > 1:8386155/1‑35 gCCAAAACCCCAGCCAAAAGTGCATTGATAGCGTG < 1:20381842/34‑1 cCCAAAACCCCAGCCAAAAGTGCATTGATAGCGTG < 1:11521607/34‑1 cCCAAAACCCCAGCCAAAAGTGCATTGATAGCGTG < 1:6752924/34‑1 CCAAACCCCCAGCCAAAAGTGCATTGATAGCGTGA < 1:17256024/35‑1 CCAAAACCCCAGCCAAAAGTGCATTGATAGCGTGA < 1:5492179/35‑1 CCAAAACCCCAGCCAAAAGTGCATTGATAGCGTGA < 1:948774/35‑1 aAAAACCCCAGCCAAAAGTGCATTGATAGCGTGAA < 1:924550/34‑1 CAAACCCCCAGCCAAAAGTGCATTGATAGCGTGAA < 1:9039360/35‑1 CAAAACCCCAGCCAAAAGTGCATTGATAGCGTGAA < 1:10665819/35‑1 AAAACCCCAGCCAAAAGTGCATTGATAGCGTGAAA < 1:10316748/35‑1 aaaCCCCAGCCAAAAGTGCATTGATAGCGTGAAAT < 1:3704/32‑1 aaCCCCAGCCAAAAGTGCATTGATAGCGTGAAATA < 1:9153490/33‑1 aCCCCAGCCAAAAGTGCATTGATAGCGTGAAATAA < 1:20069333/34‑1 aCCCCAGCCAAAAGTGCATTGATAGCGTGAAATAA < 1:3630174/34‑1 tCCCAGCCAAAAGTGCATTGATAGCGTGAAATAAC < 1:4992768/34‑1 CCCCAGCCAAAAGTGCATTGATAGCGTGAAATAAC < 1:18752642/35‑1 CCCCAGCCAAAAGTGCATTGATAGCGTGAAATAAC < 1:17245407/35‑1 CCCCAGCCAAAAGTGCATTGATAGAGTGAAATAAC < 1:4236548/35‑1 CCCAGCCAAAAGTGCATTGATAGCGTGAAATAACA < 1:14363741/35‑1 CCCAGCCAAAAGTGCATTGATAGCGTGAAATAACA < 1:8584498/35‑1 CCAGCCAAAAGTGCATTGATAGCGTGAAATAACAG < 1:11767286/35‑1 CCAGCCAAAAGTGCATTGATAGCGTGAAATAACAG < 1:2604552/35‑1 CCAGCCAAAAGTGCATTGATAGCGTGAAATAACAG < 1:17327128/35‑1 CAGCCGAAAGTGCATTGATAGCGTGAAATAACAGC < 1:20133/35‑1 CAGCCAAAAGTGCATTGATAGCGTGAAATAACAGC < 1:9327988/35‑1 CAGCCAAAAGTGCATTGATAGCGTGAAATAACAGC < 1:13117187/35‑1 CAGCCAAAAGTGCATTGATAGCGTGAAATAACAGC < 1:916990/35‑1 AGCCAAAAGTGCATTGATAGCGTGAAATAACAGCA > 1:5040993/1‑35 AGCCAAAAGTGCATTGATAGCGTGAAATAACAGCA > 1:9773785/1‑35 AGCCAAAAGTGCATTGATAGCGTGAAATAACAGCA < 1:19392626/35‑1 AGCCAAAAGTGCATTGATAGCGTGAAATAACAGCA > 1:19262024/1‑35 GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG < 1:11090638/35‑1 GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG < 1:2705613/35‑1 GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG < 1:4376230/35‑1 GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG < 1:16496329/35‑1 GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG > 1:1860706/1‑35 GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG < 1:19606036/35‑1 GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG > 1:18940060/1‑35 GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG > 1:19100133/1‑35 GCCAAAAGTGCATTGATAGCGTGAAATAACAGAAG < 1:15930686/35‑1 CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA < 1:7318025/35‑1 CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA > 1:7579899/1‑35 CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA > 1:18784734/1‑35 CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA > 1:8562455/1‑35 CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA > 1:17239767/1‑35 CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA < 1:8778737/35‑1 CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA < 1:12463528/35‑1 CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA < 1:12090342/35‑1 CAAAAGTGCATTGATATCGTGAAATAACAGCAGAT > 1:330089/1‑35 CAAAAGTGCATTGATAGCGTGAAATAACAGCAGAT > 1:20000678/1‑35 AAAAGTGCATTGATAGCGTGAAATAACAGCAGATT < 1:10695097/35‑1 AAAAGTGCATTGATAGCGTGAAATAACAGCAGATT < 1:2946377/35‑1 AAAAGTGCATTGATAGCGTGAAATAACAGCAGATT < 1:17512076/35‑1 AAAGTGCATTGATAGCGTGAAATAACAGCAGATTG > 1:10295520/1‑35 AAAGTGCATTGATAGCGTGAAATAACAGCAGATTG > 1:12350611/1‑35 AAAGTGCATTGATAGCGTGAAATAACAGCAGATTG > 1:4652336/1‑35 AAAGTGCATTGATAGCGTGAAATAACAGCAGATTG > 1:16728531/1‑35 AAAGTGCATTGATAGCGTGAAATAACAGCAGATTG < 1:5274177/35‑1 AAAGTGCATTGATAGCGTGAAATAACAGCAGATTG < 1:7906556/35‑1 AAGTGCATTTATAGCGTGAAATAACAGCAGATTGA > 1:17419212/1‑35 AAGTGCATTGATAGCGTGAAATAACAGCAGATTGA < 1:20224262/35‑1 AAGTGCATTGATAGCGTGAAATAACAGCAGATTGA > 1:20373955/1‑35 AAGTGCATTGATAGCGTGAAATAACAGCAGATTGA < 1:5822932/35‑1 AAGTGCATTGATAGCGTGAAATAACAGCAGATTGA < 1:17631858/35‑1 AAGTGCATTGATAGCGTGAAATAACAGCAGATTGA > 1:7638751/1‑35 AAGTGCATTGATAGCGTGAAATAACAGCAGATTGA > 1:18230296/1‑35 CAGTTAATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/672756‑672796 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaaaAGTGCATTGATAGCGTGAAATAACAGCAGATTGA > REL606/1048881‑1048914 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |