New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1494073 = | 76 (0.740) | 15 (0.170) | 7/42 | NT | 16.6% | coding (657/1062 nt) | yncE | hypothetical protein |
? | REL606 | 4351442 = | 84 (0.930) | intergenic (+50/‑88) | groEL/yjeI | chaperonin GroEL/hypothetical protein |
Only 100 of 135 total aligned reads displayed.
TGATTACCATCGACACCGCCGACAATAAAATCCTCAGCCGTAAAAAGCTGCTGGATGACGGCAAAGAGC > REL606/1494039‑1494107 | tGATTACCATCGACACCGCCGACAATAAAATCCTc > 1:17000170/1‑35 (MQ=255) tGATTACCATCGACACCGCCGACAATAAAATCCTc > 1:19774542/1‑35 (MQ=255) cttatactagaaagatgaccaaaagaaaaaccccc > 1:19414826‑M1/35‑35 (MQ=255) cttatactagaaagatgaccaaaagaaaaaccccc < 1:16320942‑M1/1‑1 (MQ=255) ttatactagaaagatgaccaaaagaaaaaccccCa < 1:552994‑M1/2‑1 (MQ=255) ttatactagaaagatgaccaaaagaaaaaccccCa > 1:17970720‑M1/34‑35 (MQ=255) gATTACCATCGACACCGCCGACAATAAAATCCTCa > 1:13861885/1‑35 (MQ=255) aTTACCATCGACACCGCCGACAATAAAATCCTCAg > 1:16800743/1‑35 (MQ=255) aTTACCATCGACACCGCCGACAATAAAATCCTCAg > 1:16108901/1‑35 (MQ=255) ttACCATCGACACCGCCGACCATAAAATCCTCacc > 1:2316063/1‑33 (MQ=25) ttACCATCGACACCGCCGACAATAAAATCCTCatc > 1:14986880/1‑33 (MQ=255) ttACCATCGACACCGCCGACAATAAAATCCTCAGc > 1:12550598/1‑35 (MQ=255) ttACCATCGACACCGCCGACAATAAAATCCTCAGc > 1:3673217/1‑35 (MQ=255) ttACCATCGACACCGCCGACAATAAAATCCTCAGc > 1:1827679/1‑35 (MQ=255) aCCATCGACACCGCCGACAATAAAATCCTCAGCCg > 1:2682485/1‑35 (MQ=255) ccATCGACACCGCCGACAATAAAATCCTCAGCCGt > 1:8633902/1‑35 (MQ=255) aTCGACACCGCCGACAATAAAATCCTCAGCCGTaa > 1:16419474/1‑35 (MQ=255) aTCGACACCGCCGACAATAAAATCCTCAGCCGTaa > 1:6124775/1‑35 (MQ=255) cGACACCGCCGACAATATAATCCTCAGCCGTaaaa > 1:15004094/1‑35 (MQ=255) cGACACCGCCGACAATAAAATCCTCAGCCGCaaaa > 1:8203509/1‑35 (MQ=255) gACACCGCCGACAATAAAATCCTCAGCCGTaaaaa > 1:3340682/1‑35 (MQ=255) gACACCGCCGACAATAAAATCCTCAGCCGTaaaaa > 1:12452848/1‑35 (MQ=255) gACACCGCCGACAATAAAATCCTCAGCCGTaaaaa > 1:7243795/1‑35 (MQ=255) gACACCGCCGACAATAAAATCCTCAGCCGTaaaaa > 1:18728036/1‑35 (MQ=255) acacCGCCGACAATAAAATCCTCAGCCGTAAAAAg > 1:8819058/1‑35 (MQ=255) acacCGCCGACAATAAAATCCTCAGCCGTAAAAAg > 1:9854220/1‑35 (MQ=255) acacCGCCGACAATAAAATCCTCAGCCGTAAAAAg > 1:285468/1‑35 (MQ=255) acCGCCGACAATAAAATCCTCAGCCGTAAAAAgct > 1:18333823/1‑35 (MQ=255) acCGCCGACAATAAAATCCTCAGCCGTAAAAAgct > 1:17510203/1‑35 (MQ=255) acCGCCGACAATAAAATCCTCAGCCGTAAAAAgct > 1:7226360/1‑35 (MQ=255) acCGCCGACAATAAAATCCTCAGCCGTAAAAAgct > 1:12823960/1‑35 (MQ=255) acCGCCGACAATAAAATCCTCAGCCGTAAAAAgct > 1:7742180/1‑35 (MQ=255) ccgccgACAATAAAATCCTCAGCCGTAAAAAgctg > 1:11808903/1‑35 (MQ=255) ccgccgACAATAAAATCCTCAGCCGTAAAAAgctg > 1:4233492/1‑35 (MQ=255) ccgccgACAATAAAATCCTCAGCCGTAAAAAgctg > 1:13310185/1‑35 (MQ=255) cagccgACAATAAAATCCTGAGCCGTAAAAAgctg < 1:8846806/33‑1 (MQ=38) gccgACAATAAAATCCTCAGCCGTAAAAAgctgct > 1:12012277/1‑35 (MQ=255) gccgACAATAAAATCCTCAGCCGTAAAAAgctgct > 1:10824361/1‑35 (MQ=255) gccgACAATAAAATCCTCAGCCGTAAAAAgctgct > 1:10780292/1‑35 (MQ=255) ccgACAATAAAATCCTCAGCCGTAAAAAGctgctg > 1:11161533/1‑35 (MQ=255) ccgACAATAAAATCCTCAGCCGTAAAAAGctgctg > 1:1106344/1‑35 (MQ=255) ccgACAATAAAATCCTCAGCCGTAAAAAGctgctg > 1:9844955/1‑35 (MQ=255) ccgACAATAAAATCCTCAGCCGTAAAAAGctgctg > 1:186277/1‑35 (MQ=255) ccgACAATAAAATCCTCAGCCGTAAAAAGctgctg > 1:15400965/1‑35 (MQ=255) ccgAAAAAAAATTCCCCAGCCGTAAAAAGctgctg < 1:10615165/35‑1 (MQ=19) ccaaaaaaaaaaccccCAGCCGTAAAAAGctgctg > 1:1544121‑M1/17‑35 (MQ=255) cgACAATAAAATCCTCAGCCGTAAAAAGCTGCTgg > 1:7052900/1‑35 (MQ=255) cgACAATAAAATCCTCAGCCGTAAAAAGCTGCTgg > 1:9326910/1‑35 (MQ=255) cgACAATAAAATCCTCAGCCGTAAAAAGCTGCTgg > 1:13677187/1‑35 (MQ=255) caaaaaaaaaaccccCAGCCGTAAAAAGCTGCTgg > 1:3740673‑M1/16‑35 (MQ=255) gACAATAAAATCCTCAGCCGTAAAAAGCTGCTGGa > 1:5324395/1‑35 (MQ=255) gACAATAAAATCCTCAGCCGTAAAAAGCTGCTGGa > 1:2810983/1‑35 (MQ=255) gACAATAAAATCCTCAGCCGTAAAAAGCTGCTGGa > 1:8835945/1‑35 (MQ=255) gACAATAAAATCCTCAGCCGTAAAAAGCTGCTGGa > 1:15393210/1‑35 (MQ=255) aaaaaaaaaccccCAGCCGTAAAAAGCTGCTGGAt > 1:592166‑M1/14‑35 (MQ=255) aCAATAAAATCCTCAGCCGTAAAAAGCTGCTGGAt > 1:327988/1‑35 (MQ=255) aCAATAAAATCCTCAGCCGTAAAAAGCTGCTGGAt > 1:10837800/1‑35 (MQ=255) aCAATAAAATCCTCAGCCGTAAAAAGCTGCTGGAt > 1:1597326/1‑35 (MQ=255) aCAATAAAATCCTCAGCCGTAAAAAGCTGCTGGAt > 1:19123516/1‑35 (MQ=255) aCAAAAAAACCCCCAGCCGTAAAAAGCTGCTGGAt < 1:17999341/35‑1 (MQ=25) cAAAAAAATCCCCAGCCGTAAAAAGCTGCTGGATg < 1:6802883/35‑1 (MQ=25) aaaaaaaaccccCAGCCGTAAAAAGCTGCTGGATg > 1:373708‑M1/13‑35 (MQ=255) aaaTAAAATCCCCAGCCGTAAAAAGCTGCTGGATg < 1:3384760/34‑1 (MQ=255) aaTAAAATCCTCAGCCGTAAAAAGCTGCTGGATgg > 1:10417095/1‑34 (MQ=255) aaTAAAATCCTCAGCCGTAAAAAGCTGCTGGATGa > 1:7679917/1‑35 (MQ=255) ataaaaccccCAGCCGTAAAAAGCTGCTGGATGAc > 1:4589836‑M1/11‑35 (MQ=255) aTAAAATCCTCAGCCGTAAAAAGCTGCTGGATggc > 1:734547/1‑33 (MQ=255) aTAAAATCCTCAGCCGTAAAAAGCTGCTGGATGAc > 1:14636078/1‑35 (MQ=255) taaaaccccCAGCCGTAAAAAGCTGCTGGATGACg > 1:755307‑M1/10‑35 (MQ=255) tAAAATCCTCAGCCGTAAAAAGCTGCTGGATGACg > 1:18721910/1‑35 (MQ=255) tAAAACCCTCAGCCGTAAAAAGCTGCTGGATGACg < 1:15483699/35‑1 (MQ=255) aaaaccccCAGCCGTAAAAAGCTGCTGGATGACgg > 1:405141‑M1/9‑35 (MQ=255) aaaaccccCAGCCGTAAAAAGCTGCTGGATGACgg > 1:16047544‑M1/9‑35 (MQ=255) aaaaTCCTCAGCCGTAAAAAGCTGCTGGATGACgt > 1:1920763/1‑34 (MQ=255) aaaTCCTCAGCCGTAAAAAGCTGCTGGATGACGGc > 1:20167229/1‑35 (MQ=255) aaaTCCTCAGCCGTAAAAAGCTGCTGGATGACGGc > 1:6237763/1‑35 (MQ=255) actcccCAGCCGTAAAAAGCTGCTGGATGACGGCa > 1:11345337‑M1/7‑35 (MQ=255) accccCAGCCGTAAAAAGCTGCTGGATGACGGCaa > 1:1204213‑M1/6‑35 (MQ=255) aTCCTCAGCCGTAAAAAGCTGCTGGATGACTGCaa > 1:3023544/1‑35 (MQ=255) aTCCTCAGCCGTAAAAAGCTGCTGGATGACGGCaa > 1:2724560/1‑35 (MQ=255) aTCCTCAGCCGTAAAAAGCTGCTGGATGACGGCaa > 1:18288366/1‑35 (MQ=255) aTCCTCAGCCGTAAAAAGCTGCTGGATGACGGCaa > 1:19817764/1‑35 (MQ=255) tCCTCAGCCGTAAAAAGCTGCTGGATGACGGCaaa > 1:4552815/1‑35 (MQ=255) cccCAGCCGTAAAAAGCTGCTGGATGACGGCAAag > 1:626954‑M1/4‑35 (MQ=255) ccTCAGCCGTAAAAATCTGCTGGATGACGGCAAag > 1:13334540/1‑35 (MQ=255) ccTCAGCCGTAAAAAGCTGCTGGATGACGGCAAag > 1:6372784/1‑35 (MQ=255) ccCAGCCGTAAAAAGCTGCTGGATGACGGCAAaga > 1:14310074‑M1/3‑35 (MQ=255) ccCAGCCGTAAAAAGCTGCTGGATGACGGCAAaga > 1:19531394‑M1/3‑35 (MQ=255) ccCAGCCGTAAAAAGCTGCTGGATGACGGCAAaga > 1:7355330‑M1/3‑35 (MQ=255) cTCAGCCGTAAAAAGCTGCTGGATGACGGCAAaga > 1:13106656/1‑35 (MQ=255) cTCAGCCGTAAAAAGCTGCTGGATGACGGCAAaga < 1:18083369/35‑1 (MQ=255) cTCAGCCGTAAAAAGCTGCTGGATGACGGCAAaga > 1:17750841/1‑35 (MQ=255) tCAGCCGTAAAAAGCTGCTGGATGACGGCAAagag > 1:15989131/1‑35 (MQ=255) cCAGCCGTAAAAAGCTGCTGGATGACGGCAAagag > 1:11037933‑M1/2‑35 (MQ=255) cCAGCCGTAAAAAGATGCTGGATGACGGCAAagag > 1:4874778‑M1/2‑35 (MQ=255) CAGCCGTAAAAAGCTGCTGGATGACGGCAaagagn > 1:9369610‑M1/1‑34 (MQ=255) CAGCCGTAAAAAGCTGCTGGATGACGGCAAAGAGc < 1:4177067‑M1/35‑1 (MQ=255) CAGCCGTAAAAAGCTGCTGGATGACGGCAAAGAGc < 1:1466311‑M1/35‑1 (MQ=255) CAGCCGTAAAAAGCTGCTGGATGACGGCAAAGAGc < 1:16989190‑M1/35‑1 (MQ=255) CAGCCGTAAAAAGCTGCTGGATGACGGCAAAGAGc < 1:20417044‑M1/35‑1 (MQ=255) | TGATTACCATCGACACCGCCGACAATAAAATCCTCAGCCGTAAAAAGCTGCTGGATGACGGCAAAGAGC > REL606/1494039‑1494107 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |