Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,728,186 | 1 | .→G | 1.2% | 0.3 ‑4.9 ‑0.0 | 169 | coding (851/1440 nt) | norV | anaerobic nitric oxide reductase flavorubredoxin |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (2/0): ref base (13/154): total (15/154) | ||||||||||
Fisher's exact test strand distribution p-value = 7.40e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.28e-01 |
Only 100 of 220 total aligned reads displayed.
GCCCAGGGAATTGCGGAAACCGACCCACGCGTGGCGGTGAAAATTTTCAACGTCGCCCGAAGCGATAAA > REL606/2728152‑2728220 gCCCAGGGAATTGCGGAAACCGACCCACGCGTGGc < 1:3302589/35‑1 (MQ=255) gCCCAGGGAATTGCGGAAACCGACCCACGCGTGGc < 1:8622854/35‑1 (MQ=255) gCCCAGGGAATTGCGGAAACCGACCCACGCGTGGc > 1:19950873/1‑35 (MQ=255) gCCCAGGGAATTGCGGAAACCGACCCACGCGTGGc < 1:19297910/35‑1 (MQ=255) gCCCAGGGAATTGCGGAAACCGACCCACGCGTGGc < 1:12436494/35‑1 (MQ=255) gCCCAGGGAATTGCGGAAACCGACCCACGCGTGGc < 1:11484795/35‑1 (MQ=255) cccGGGGAATTGCGGAAACCGACCCACGCGTGGCg < 1:18369278/35‑1 (MQ=255) cccAGGGAATTGCGGAAACCGACCCACGCGTGGCg < 1:18850236/35‑1 (MQ=255) cccAGGGAATTGCGGAAACCGACCCACGCGTGGCg < 1:8127357/35‑1 (MQ=255) ccAGGGAATTGCTGAAACCGACCCACGCGTGGCgg > 1:9044983/1‑35 (MQ=255) ccAGGGAATTGCGGAAACCGACCCACGCGTGGCgg > 1:16680743/1‑35 (MQ=255) ccAGGGAATTGCGGAAACCGACCCACGCGTGGCga > 1:5243747/1‑34 (MQ=255) ccAGGGAATTGCGGAAACCCACCCACGCGTGGCgg > 1:4864648/1‑35 (MQ=255) cAGGGAATTGCGGAAACCGACCCACGCGTGGCggg > 1:11837833/1‑34 (MQ=255) cAGGGAATTGCGGAAACCGACCCACGCGTGGCggg > 1:2189330/1‑34 (MQ=255) cAGGGAATTGCGGAAACCGACCCACGCGTGGCGGt < 1:6176006/35‑1 (MQ=255) cAGGGAATTGCGGAAACCGACCCACGCGTGGCGGt < 1:12671786/35‑1 (MQ=255) cAGGGAATTGCGGAAACCGACCCACGCGTGGCGGt < 1:7540370/35‑1 (MQ=255) cAGGGAATTGCGGAAACCGACCCACGCGCGGCggg > 1:351356/1‑34 (MQ=255) aGGGAATTGCGGAAACCGACCCACGCGTGGCgggg > 1:7265708/1‑33 (MQ=255) aGGGAATTGCGGAAACCGACCCACGCGTGGCgggg > 1:8081721/1‑33 (MQ=255) aGGGAATTGCGGAAACCGACCCACGCGTGGCgggg > 1:959459/1‑33 (MQ=255) aGGGAATTGCGGAAACCGACCCACGCGTGGCgggg > 1:13597710/1‑33 (MQ=255) aGGGAATTGCGGAAACCGACCCACGCGTGGCgggg > 1:13915626/1‑33 (MQ=255) aGGGAATTGCGGAAACCGACCCACGCGTGGCGGTg < 1:2278946/35‑1 (MQ=255) aGGGAATTGCGGAAACCGACCCACGCGTGGCGGTg < 1:14549745/35‑1 (MQ=255) aGGGAATTGCGGAAACCGACCCACGCGTGGCGGTg < 1:13012947/35‑1 (MQ=255) aGGGAATTGCGGAAACCGACCCACGCGTGGCGGTg < 1:3874064/35‑1 (MQ=255) aGGGAATTGCGGAAACCGACCCACGCGTGGCGGTg < 1:16884120/35‑1 (MQ=255) gggAATTGCGGAAACCGACCCACGCGTGGCggggg > 1:3327548/1‑32 (MQ=255) gggAATTGCGGAAACCGACCCACGCGTGGCggggg > 1:3336305/1‑32 (MQ=255) gggAATTGCGGAAACCGACCCACGCGTGGCGGTGa < 1:3623843/35‑1 (MQ=255) ggAATTGCGGAAACCGACCCACGCGTGGCGGTGaa < 1:174449/35‑1 (MQ=255) ggAATTGCGGAAACCGACCCACGCGTGGCGGTGaa < 1:20535381/35‑1 (MQ=255) ggAATTGCGGAAACCGACCCACGCGTGGCGGTGaa < 1:8360665/35‑1 (MQ=255) ggAATTGCGGAAACCGACCCACGCGTGGCGGTGaa < 1:9863767/35‑1 (MQ=255) gAATTGCGGAAACCGACCCACGCGTGGCGGTGaaa < 1:16470070/35‑1 (MQ=255) gAATTGCGGAAACCGACCAACGCGTGGCGGTGaaa < 1:5716704/35‑1 (MQ=255) aaTTGCGGAAACCGACCCACGCGTGGCGGTGaaaa < 1:15068954/35‑1 (MQ=255) aaTTGCGGAAACCGACCCACGCGTGGCGGTGaaaa < 1:11390226/35‑1 (MQ=255) aaTTGCGGAAACAGACCCACGCGTGGCGGTGaaaa < 1:1343258/35‑1 (MQ=255) aTTGCGGAAACCGACCCACGCGTGGCGGTGAAAAt < 1:15407618/35‑1 (MQ=255) gCGGAAACCGACCCACGCGTGGCGGTGAAAAtttt < 1:9260292/35‑1 (MQ=255) gCGGAAACCGACCCACGCGTGGCGGTGAAAAtttt < 1:13648777/35‑1 (MQ=255) gCGGAAACAGACCCACGCGTGGCGGTGAAAAtttt < 1:14273763/35‑1 (MQ=255) cGGAAACCGACCCACGCGTGGCGGTGAAAATTTTc < 1:8878689/35‑1 (MQ=255) cGGAAACCGACCCACGCGTGGCGGTGAAAATTTTc < 1:18055808/35‑1 (MQ=255) cGGAAACCGACCCACGCGTGGCGGTGAAAATTTTc < 1:11279882/35‑1 (MQ=255) ggAAACCGACCCACGCGTGGCGTTGAAAATTTTCa > 1:2795921/1‑35 (MQ=255) ggAAACCGACCCACGCGTGGCGGTGAAAATTTTCa < 1:107360/35‑1 (MQ=255) ggAAACCGACCCACGCGTGGCGGTGAAAATTTTCa < 1:1281750/35‑1 (MQ=255) ggAAACCGACCCACGCGTGGCGGTGAAAATTTTCa < 1:8803032/35‑1 (MQ=255) gAAACCGACCCACGCGTGGCGGTGAAAATTTTCaa < 1:9709078/35‑1 (MQ=255) cccccGACACACGCGTGGCGGTGAAAATTTTCAAc < 1:6825395/32‑1 (MQ=37) aacccGGCCCACGCGTGGCGGTGAAAATTTTCAAc < 1:3791129/32‑1 (MQ=25) aaaCCGACCCACGCGTGGCGGTGAAAATTTTCAAc < 1:15142444/35‑1 (MQ=255) aaaCCGACCCACGCGTGGCGGTGAAAATTTTCAAc < 1:6695766/35‑1 (MQ=255) aaaCCGACCCACGCGTGGCGGTGAAAATTTTCAAc < 1:11636320/35‑1 (MQ=255) agccGACCCACGCGTGGCGGTGAAAATTTTCAACg < 1:17499713/33‑1 (MQ=255) aaCCGACCCACGCGTGGCGGTGAAAATTTTCAACg < 1:10399015/35‑1 (MQ=255) aaCCGACCCACGCGTGGCGGTGAAAATTTTCAACg < 1:17914899/35‑1 (MQ=255) aaCCGACCCACGCGTGGCGGTGAAAATTTTCAACg < 1:9505596/35‑1 (MQ=255) aaCCGACCCACGCGTGGCGGTGAAAATTTTCAACg < 1:16046117/35‑1 (MQ=255) aaCCGACCCACGCGTGGCGGTGAAAATTTTCAACg < 1:19590839/35‑1 (MQ=255) aaCCGACCCACGCGTGGCGGTGAAAATTTTCAACg < 1:10488618/35‑1 (MQ=255) aCCGACCCACGCGTGGCGGTGAAAATTTTCAACGt < 1:3652555/35‑1 (MQ=255) aCCGACCCACGCGTGGCGGTGAAAATTTTCAACGt < 1:19497664/35‑1 (MQ=255) ccGACCCACGCGTGGCGGTGAAAATTTTCAACGTc < 1:11020739/35‑1 (MQ=255) ccGACCCACGCGTGGCGGTGAAAATTTTCAACGTc < 1:3072320/35‑1 (MQ=255) ccGACCCACGCGTGGCGGTGAAAATTTTCAACGTc < 1:2088396/35‑1 (MQ=255) cGACCCACGCGTGGCGGTGAAAATTTTCAACGTCg < 1:4682113/35‑1 (MQ=255) cGACCCACGCGTGGCGGTGAAAATTTTCAACGTCg < 1:12133772/35‑1 (MQ=255) cGACCCACGCGTGGCGGTGAAAATTTTCAACGTCg < 1:17980807/35‑1 (MQ=255) gACCCACGCGTGGCGGTGAAAATTTTCAACGTCGc < 1:4261304/35‑1 (MQ=255) aCCCACGCGTGGCGGTGAAAATTTTCAACGTCGcc < 1:7655112/35‑1 (MQ=255) aCCCACGCGTGGCGGTGAAAATTTTCAACATCGcc < 1:8278549/35‑1 (MQ=255) cccACGCGTGGCGGTGAAAATTTTCAACGTCGccc < 1:7668815/35‑1 (MQ=255) cccACGCGTGGCGGTGAAAATTTTCAACGTCGccc < 1:17373626/35‑1 (MQ=255) cccACGCGTGGCGGTGAAAATTTTCAACGTCGccc < 1:20287739/35‑1 (MQ=255) cccACGCGTGGCGGTGAAAATTTTCAACGTCGccc < 1:2677662/35‑1 (MQ=255) cccACGCGTCGCGGTGAAAATTTTCAACGTCGccc > 1:6765423/1‑35 (MQ=255) cACGCGTGGCGGTGAAAATTTTCAACGTCGCCCGa < 1:6352956/35‑1 (MQ=255) aCGCGTGGCGGTGAAAATTTTCAACGTCGCCCGaa < 1:6800209/35‑1 (MQ=255) aCGCGTGGCGGTGAAAATTTTCAACGTCGCCCGaa < 1:11817362/35‑1 (MQ=255) aCGCGTGGCGGTGAAAATTTTCAACGTCGCCCGaa < 1:8497672/35‑1 (MQ=255) cgcgTGGCGGTGAAAATTTTCAACGTCGCCCGAAg < 1:16780343/35‑1 (MQ=255) cgcgTGGCGGTGAAAATTTTCAACGTCGCCCGAAg < 1:10835821/35‑1 (MQ=255) gcgTGGCGGTGAAAATTTTCAACGTCGCCCGAAGc < 1:1022230/35‑1 (MQ=255) gcgTGGCGGTGAAAATTTTCAACGTCGCCCGAAGc < 1:19920426/35‑1 (MQ=255) gcgTGGCGGTGAAAATTTTCAACGTCGCCCGAAGc < 1:1402974/35‑1 (MQ=255) gcgTGGCGGTGAAAATTTTCAACGTCGCCCGAAGc < 1:13176857/35‑1 (MQ=255) cgTGGCGGTGAAAATTTTCAACGTCGCCCGAAGCg < 1:3745100/35‑1 (MQ=255) cgTGGCGGTGAAAATTTTCAACGTCGCCCGAAGCg < 1:5441994/35‑1 (MQ=255) tGGCGGTGAAAATTTTCAACGTCGCCCGAAGCGAt < 1:7961148/35‑1 (MQ=255) tGGCGGTGAAAATTTTCAACGTCGCCCGAAGCGAt < 1:17308736/35‑1 (MQ=255) tGGCGGTGAAAATTTTCAACGTCGCCCGAAGCGAt < 1:6955838/35‑1 (MQ=255) ggCGGTGAAAATTTTCAACGTCGCCCGAAGCGATa < 1:11276068/35‑1 (MQ=255) ggCGGTGAAAATTTTCAACGTCGCCCGAAGCGATa < 1:5046556/35‑1 (MQ=255) gCGGTGAAAATTTTCAACGTCGCCCGAAGCGATaa < 1:7240676/35‑1 (MQ=255) cGGTGAAAATTTTCAACGTCGCCCGAAGCGATaaa < 1:14671242/35‑1 (MQ=255) GCCCAGGGAATTGCGGAAACCGACCCACGCGTGGCGGTGAAAATTTTCAACGTCGCCCGAAGCGATAAA > REL606/2728152‑2728220 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |