New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 65726081 (0.790)7 (0.090) 5/38 NT 8.3% coding (108/2583 nt) leuS leucyl‑tRNA synthetase
?REL606 = 1387545 90 (1.110)coding (247/966 nt) ycjG L‑Ala‑D/L‑Glu epimerase

Only 100 of 195 total aligned reads displayed.

AGGGCTGACACGGGAGGAGTTGCAAAAAATTCTCCCTGCCGGCGCAGCACGTAATGCGCTGGATTGTGC  >  REL606/1387511‑1387579
                                  |                                  
aGGGCTGACACGGGAGGAGTTGCAAAAAATTCTcc                                    <  1:19343828/35‑1 (MQ=255)
 gggCTGACACGGGAGGAGTTGCAAAAAATTCTCCc                                   <  1:15175959‑M2/35‑2 (MQ=255)
  ggCTGACACGGGAGGAGTTGCAAAAAATTCTCCct                                  <  1:20576913‑M2/35‑3 (MQ=255)
  ggCTGACACGGGAGGAGTTGCAAAAAATTCTCCct                                  <  1:1760563‑M2/35‑3 (MQ=255)
  ggCTGACACGGGAGGAGTTGCAAAAAATTCCCCct                                  <  1:1171998‑M2/35‑3 (MQ=255)
   gCTGACACGGGAGGAGTTGCAAAAAATTCTCCctg                                 <  1:3088808‑M2/35‑4 (MQ=255)
   gCTGACACGGGAGGAGTTGCAAAAAATTCTCCctg                                 >  1:8184974‑M2/1‑32 (MQ=255)
    cTGACACGGGAGGAGTTGCAAAAAATTCTCCctgc                                >  1:3650383‑M2/1‑31 (MQ=255)
    cTGACACGGGAGGAGTTGCAAAAAATTCTCCctgc                                <  1:15005318‑M2/35‑5 (MQ=255)
    cTGACACGGGAGGAGTTGCAAAAAATTCTCCctga                                <  1:18775573‑M2/35‑5 (MQ=255)
     tGACACGGGAGGGGTTGCAAAAAATTCTCCctgcc                               <  1:9346379‑M2/35‑6 (MQ=255)
     tGACACGGGAGGAGTTGCAAAAAATTCTCCctgcc                               >  1:12315962‑M2/1‑30 (MQ=255)
      gACACGGGAGGAGTTGCAAAAAATTCTCCCTGCCg                              <  1:5212298/35‑1 (MQ=255)
      gACACGGGAGGAGTTGCAAAAAATTCTCCCTGCCg                              >  1:12127134/1‑35 (MQ=255)
      gACACGGGAGGAGTTGCAAAAAATTCTCCCTGCCg                              <  1:1565672/35‑1 (MQ=255)
      gACACGGGAGGAGTTGCAAAAAATTCTCCCTGCCg                              >  1:18955321/1‑35 (MQ=255)
      gACACGGGAGGAGTTGCAAAAAATTCTCCATGCCg                              <  1:1703709/35‑1 (MQ=255)
       acacGGGAGGAGTTGCAAAAAATTCTCCCTGCCgg                             >  1:15759915/1‑35 (MQ=255)
       acacGGGAGGAGTTGCAAAAAATTCTCCCTGCCgg                             <  1:31729/35‑1 (MQ=255)
        cacGGGAGGAGTTGCAAAAAATTCTCCCTGCCGgc                            >  1:11035143/1‑35 (MQ=255)
        cacGGGAGGAGTTGCAAAAAATTCTCCCTGCCGgc                            >  1:19585708/1‑35 (MQ=255)
        cacGGGAGGAGTTGCAAAAAATTCTCCCTGCCGgc                            >  1:15951966/1‑35 (MQ=255)
        cacGGGAGGAGTTGCAAAAAATTCTCCCTGCCGgc                            >  1:6481217/1‑35 (MQ=255)
         acGGGAGGAGTTGCAAAAAATTCTCCCTGCCGgcg                           <  1:2431230/35‑1 (MQ=255)
         acGGGAGGAGTTGCAAAAAATTCTCCCTGCCGgcg                           <  1:4055234/35‑1 (MQ=255)
          cGGGAGGAGTTGCAAAAAATTCTCCCTGCCGgcgc                          >  1:18651108/1‑35 (MQ=255)
          cGGGAGGAGTTGCAAAAAATTCTCCCTGCCGgcgc                          >  1:16003126/1‑35 (MQ=255)
            ggaggaGTTGCAAAAAATTCTCCCTGCCGGCgcag                        <  1:20074797/35‑1 (MQ=255)
            ggaggaGTTGCAAAAAATCCTCCCTGCCGGCgcag                        >  1:4511381/1‑35 (MQ=255)
             gaggagTTGCAAAAAATTCTCCCTGCCGGCgcagc                       >  1:4978793/1‑35 (MQ=255)
             gaggagTTGCAAAAAATTCTCCCTGCCGGCgcagc                       <  1:5938218/35‑1 (MQ=255)
             gaggagTTGCAAAAAATTCTCCCTGCCGGCgcagc                       <  1:16739009/35‑1 (MQ=255)
              aggagTTGCAAAAAATTCTCCCTGCCGGCgcagca                      >  1:10943526/1‑35 (MQ=255)
              aggagTTGCAAAAAATTCTCCCTGCCGGCgcagca                      <  1:7431969/35‑1 (MQ=255)
              aggagTTGCAAAAAATTCTCCCTGCCGGCgcagca                      >  1:17637905/1‑35 (MQ=255)
               ggagTTGCAAAAAATTCTCCCTGCCGGCGCAGCAc                     <  1:4769574/35‑1 (MQ=255)
               ggagTTGCAAAAAATTCTCCCTGCCGGCGCAGCAc                     >  1:14263886/1‑35 (MQ=255)
               ggagTTGCAAAAAATTCTCCCTGCCGGCGCAGCAc                     <  1:7130507/35‑1 (MQ=255)
                gagTTGCAAAAAATTCTCCCTGCCGGCGCAGCACg                    >  1:10428067/1‑35 (MQ=255)
                gagTTGCAAAAAATTCTCCCTGCCGGCGCAGCACg                    <  1:1457831/35‑1 (MQ=255)
                gagTTGCAAAAAATTCTCCCTGCCGGCGCAGCACg                    <  1:2601705/35‑1 (MQ=255)
                gagTTGCAAAAAATTCTCCCTGCCGGCGCAGCACg                    >  1:7573180/1‑35 (MQ=255)
                 agTTGCAAAAAATTCTCCCTGCCGGCGCAGCACGt                   >  1:17862029/1‑35 (MQ=255)
                 agTTGCAAAAAATTCTCCCTGCCGGCGCAGCACGt                   <  1:13262109/35‑1 (MQ=255)
                  gTTGCAAAAAATTCTCCCTGCCGGCGCAGCACGTa                  <  1:10184976/35‑1 (MQ=255)
                  gTTGCAAAAAATTCTCCCTGCCGGCGCAGCACGTa                  >  1:9304235/1‑35 (MQ=255)
                  gTTGCAAAAAATTCTCCCTGCCGGCGCAGAACGTa                  >  1:91581/1‑35 (MQ=255)
                   ttGCAAAAAATTCTCCCTGCCGGCGCAGCACGTaa                 <  1:17717884/35‑1 (MQ=255)
                   ttGCAAAAAATTCTCCCTGCCGGCGCAGCACGTaa                 <  1:9369753/35‑1 (MQ=255)
                    tGCAAAAAATTCTCCCTGCCGGCGCAGCACGTAAt                <  1:10122454/35‑1 (MQ=255)
                     gCAAAAAATTCTCCCTGCCGGCGCAGCACGTAATg               >  1:15552321/1‑35 (MQ=255)
                     gCAAAAAATTCTCCCTGCCGGCGCAGCACGTAATg               <  1:1970574/35‑1 (MQ=255)
                     gCAAAAAATTCTCCCTGCCGGCGCAGCACGTAATg               >  1:16213820/1‑35 (MQ=255)
                     gCAAAAAATTCTCCCTGCCGGCGCAGCACGTAATg               >  1:2653833/1‑35 (MQ=255)
                      cAAAAAATTCTCCCTGCCGGCGCAGCACGTAATgc              <  1:10663553/35‑1 (MQ=255)
                       aaaaaaTTCTCCGTGCCGGCGCAGCACGTAATgcg             <  1:1378761/35‑1 (MQ=255)
                       aaaaaaTTCTCCCTGCCGGCGCAGCACGTAATgcg             >  1:10137868/1‑35 (MQ=255)
                       aaaaaaTTCTCCCTGCCGGCGCAGCACGTAATgcg             >  1:14736768/1‑35 (MQ=255)
                       aaaaaaTTCTCCCTGCCGGCGCAGCACGTAATgcg             >  1:18475419/1‑35 (MQ=255)
                       aaaaaaTTCTCCCTGCCGGCGCAGCACGTAATgcg             <  1:12262262/35‑1 (MQ=255)
                        aaaaaTTCTCCCTGCCGGCGCAGCACGTAATgcgc            <  1:20261016/35‑1 (MQ=255)
                        aaaaaTTCTCCCTGCCGGCGCAGCACGTAATgcgc            <  1:5615778/35‑1 (MQ=255)
                        aaaaaTTCTCCCTGCCGGCGCAGCAAGTAATgcgc            <  1:3425489/35‑1 (MQ=255)
                         aaaaTTCTCCCTGCCGGCGCAGCACGTAATGCGCt           <  1:8615700/35‑1 (MQ=255)
                         aaaaTTCTCCCTGCCGGCGCAGCACGTAATGCGCt           >  1:9985664/1‑35 (MQ=255)
                         aaaaTTCTCCCTGCCGGCGCAGCACGTAATGCGCt           >  1:9216145/1‑35 (MQ=255)
                         aaaaTTCTCCCTGCCGGCGCAGCACGTAATGCGCt           <  1:9313345/35‑1 (MQ=255)
                         aaaaTTATCCctgcctgtctatgcttccctatcct           >  1:18904275‑M2/1‑10 (MQ=255)
                          aagttCTCCCTGCCGGCGCAGCACGTAATGCGCTg          <  1:6800096/32‑1 (MQ=255)
                          aaaTTCTCCctgcctgtctatgcttccctatcctt          >  1:6709734‑M2/1‑9 (MQ=255)
                          aaaTTCTCCCTGCCGGCGCAGCACGTAATGCGCTg          >  1:8160686/1‑35 (MQ=255)
                          aaaTTCTCCCTGCCGGCGCAGCACGTAATGCGCTg          <  1:11826674/35‑1 (MQ=255)
                          aaaTTCTCCCTGCCGGCGCAGCACGTAATGCGCTg          <  1:13064832/35‑1 (MQ=255)
                           aaTTCTCCCTGCCGGCGCAGCACGTAATGCGCTgg         >  1:7338947/1‑35 (MQ=255)
                             ttTTCCctgcctgtctatgcttccctatccttctg       >  1:2830553‑M2/1‑6 (MQ=255)
                             ttCTCCCTGCCGGCGCAGCACGTAATGCGCTGGAt       >  1:8886419/1‑35 (MQ=255)
                             ttCTCCCTGCCGGCGCAGCACGTAATGCGCTGGAt       >  1:15635460/1‑35 (MQ=255)
                             gtatccctgcctgtctatgcttccctatccttctg       >  1:5394807‑M2/4‑6 (MQ=255)
                              tctcCctgcctgtctatgcttccctatccttctgg      >  1:9671164‑M2/1‑5 (MQ=255)
                              tctcCCTGCCGGCGCAGCACGTAATGCGCTGGAtt      >  1:7959128/1‑35 (MQ=255)
                              tctcCCTGCCGGCGCAGCACGTAATGCGCTGGAtt      <  1:9079981/35‑1 (MQ=255)
                              tctcCCTGCCGGCGCAGCACGTAATGCGCTGGAtt      >  1:12765730/1‑35 (MQ=255)
                              tctcCCTGCCGGCGCAGCACGTAATGCGCTGGAtt      <  1:429449/35‑1 (MQ=255)
                              tctcCCTGCCGGCGCAGCACGTAATGCGCTAGAtt      <  1:9024842/35‑1 (MQ=255)
                              ccccccTGCCGGCGCAGCACGTAATGCGCTGGAtt      <  1:7743563/32‑1 (MQ=255)
                              ccccccTGCCGGCGCAGCACGTAATGCGCTGGAtt      <  1:13426083/32‑1 (MQ=255)
                               tcccctgcctgtctatgcttccctatccttctggt     >  1:15024181‑M2/3‑4 (MQ=255)
                               ctcCCTGCCGGCGCAGCACGTAATGCGCTGGATtg     <  1:10939747/35‑1 (MQ=255)
                               ctcCCTGCCGGCGCAGCACGTAATGCGCTGGATtg     <  1:17531298/35‑1 (MQ=255)
                               ctcCCTGCCGGCGCAGCACGTAATGCGCTGGATtg     >  1:19653436/1‑35 (MQ=255)
                                tcCCTGCCGGCGCAGCACGTAATGCGCTGGATtgt    <  1:1207502/35‑1 (MQ=255)
                                tcCCTGCCGGCGCAGCACGTAATGCGCTGGATtgt    <  1:555235/35‑1 (MQ=255)
                                tcCCTGCCGGCGCAGCACGTAATGCGCTGGATtgt    >  1:19458447/1‑35 (MQ=255)
                                cccctgcctgtctatgcttccctatccttctggtc    >  1:11982018‑M2/2‑3 (MQ=255)
                                 cccTGCCGGCGCAGCACGTAATGCGCTGGATtgtg   >  1:13845487/1‑35 (MQ=255)
                                 cccTGCCGGCGCAGCACGTAATGCGCTGGATtgtg   <  1:6512298/35‑1 (MQ=255)
                                  cctgcctgtctatgcttccctatccttctggtcga  >  1:6238941‑M2/1‑1 (MQ=255)
                                  cctgcctgtctatgcttccctatccttctggtcga  >  1:11359118‑M2/1‑1 (MQ=255)
                                  ccTGCCGGCGCAGCACGTAATGCGCTGGATTGTGc  <  1:14858857/35‑1 (MQ=255)
                                  ccTGCCGGCGCAGCACGTAATGCGCTGGATTGTGc  >  1:15382644/1‑35 (MQ=255)
                                  |                                  
AGGGCTGACACGGGAGGAGTTGCAAAAAATTCTCCCTGCCGGCGCAGCACGTAATGCGCTGGATTGTGC  >  REL606/1387511‑1387579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.