New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3006451 = | 87 (0.850) | 9 (0.100) | 4/44 | NT | 11.8% | coding (461/819 nt) | yafZ | conserved protein |
? | REL606 | 4115747 = | 55 (0.580) | coding (1806/2181 nt) | katG | catalase/hydroperoxidase HPI(I) |
Only 100 of 169 total aligned reads displayed.
AATGTGGTGGAGAAAGTTATTGAAGGGGCTTACGAGGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAG > REL606/3006417‑3006485 | caccagcgcagtcatttccggcgcggtcagcgtca > 1:20473329‑M1/35‑35 (MQ=255) caccagcgcagtcatttccggcgcggtcagcgtca > 1:2265940‑M1/35‑35 (MQ=255) caccagcgcagtcatttccggcgcggtcagcgtca < 1:8134000‑M1/1‑1 (MQ=255) aaTGTGGTGGAGAAAGTTATTGAAGGGGCTTACGa < 1:20146627/35‑1 (MQ=255) aaTGTGGTGGAGAAAGTTATTGAAGGGGCTTACGa < 1:4582656/35‑1 (MQ=255) aaTGTGGTGGAGAAAGTTATTGAAGGGGCTTACGa > 1:4799038/1‑35 (MQ=255) aaTGTGGTGGAGAAAGTTATTGAAGGGGCTTACGa > 1:10110245/1‑35 (MQ=255) aaTGTGGTGGAGAAAGTTATTGAAGGGGCTTACGa > 1:8423022/1‑35 (MQ=255) aaTGTGGTGGAGAAAGTTATTGAAGGGGCTTACGa < 1:10673483/35‑1 (MQ=255) accagcgcagtcatttccggcgcggtcagcgtcAg > 1:78794‑M1/34‑35 (MQ=255) accagcgcagtcatttccggcgcggtcagcgtcAg < 1:18933139‑M1/2‑1 (MQ=255) accagcgcagtcatttccggcgcggtcagcgtcAg > 1:18971399‑M1/34‑35 (MQ=255) accagcgcagtcatttccggcgcggtcagcgtcAg > 1:2915549‑M1/34‑35 (MQ=255) aTGTGGTGGAGAAAGTTATTGAAGGGGCTTACGAg < 1:15421411/35‑1 (MQ=255) aTGTGGTGGAGAAAGTTATTGAAGGGGCTTACGAg < 1:6992018/35‑1 (MQ=255) aTGTGGTGGAGAAAGTTATTGAAGGGGCTTACGAg > 1:5583433/1‑35 (MQ=255) aTGTGGTGGAGAAAGTTATTGAAGGGGCTTACGAg > 1:13695460/1‑35 (MQ=255) aTGTGGTGGAGAAAGTTATTGAAGGGGCTTACGAg > 1:2110491/1‑35 (MQ=255) tgtgGTGGAGAAAGTTATTGAAGGGGCTTACGAgg > 1:4761385/1‑35 (MQ=255) tgtgGTGGAGAAAGTTATTGAAGGGGCTTACGAgg < 1:8480748/35‑1 (MQ=255) gtggtgGAGAAAGTTATTGAAGGGGCTTACGAggt < 1:6327224/35‑1 (MQ=255) gtggtgGAGAAAGTTATTGAAGGGGCTTACGAggt > 1:10329511/1‑35 (MQ=255) gtggtgGAGAAAGTTATTGAAGGGGCTTACGAggg > 1:8318906/1‑34 (MQ=255) cagcgcagtcatttccggcgcggtcagcgtcAggt < 1:15020124‑M1/4‑1 (MQ=255) cagcgcagtcatttccggcgcggtcagcgtcAggt < 1:7888284‑M1/4‑1 (MQ=255) cagcgcagtcatttccggcgcgggcagcgtcaggg < 1:13207224‑M1/4‑2 (MQ=255) tggtggAGAAAGTTATTGAAGGGGCTTACGGgggg > 1:17117632/1‑33 (MQ=38) tggtggAGAAAGTTATTGAAGGGGCTTACGAggtg < 1:7731371/35‑1 (MQ=255) tggtggAGAAAGTTATTGAAGGGGCTTACGAgggg > 1:4931105/1‑33 (MQ=255) agcgcagtcatttccggcgcggtcagcgtcAggtg < 1:9598456‑M1/5‑1 (MQ=255) ggtggAGAAAGTTATTGAAGGGGCTTACGAggtgg < 1:7353651/35‑1 (MQ=255) tggAGAAAGTTATTGAAGGGGCTTACGAggggggg > 1:14196533/1‑33 (MQ=255) tggAGAAAGTTATTGAAGGGGCTTACGAGgtggtg < 1:12485193/35‑1 (MQ=255) ggAGAAAGTTATTGAAGGGGCTTACGAGGtggtgg < 1:13916896/35‑1 (MQ=255) ggAGAAAGTTATTGAAGGGGCTTACGAGGtggtgg < 1:8926708/35‑1 (MQ=255) ggAGAAAGTTATTGAAGGGGCTTACGAGGtggtgg < 1:2713236/35‑1 (MQ=255) cagtcatttccggcgcggtcagcgtcaggtggttg < 1:17535526‑M1/9‑3 (MQ=255) cagtcatttccggcgcggtcagcgtcAggtggtgt < 1:9018580‑M1/9‑2 (MQ=255) cagtcatttccggcgcggtcagcgtcAGGtggtgg < 1:7306515‑M1/9‑1 (MQ=255) cagtcatttccggcgcggtcagcgtcAGGtggtgg < 1:2521851‑M1/9‑1 (MQ=255) tctaaaGTTATTGAAGGGGCTTACGAGGTGGTggg < 1:18581998/32‑1 (MQ=255) gagaAAGTTATTGAAGGGGCTTACGAGGTGGTggg < 1:9059169/35‑1 (MQ=255) gagaAAGTTATTGAAGGGGCTTACGAGGTGGTggg < 1:5155531/35‑1 (MQ=255) gagaAAGTTATTGAAGGGGCTTACGAGGTGGGggg > 1:17131004/1‑35 (MQ=255) gagaAAGTTATTGAAGGGGCTTACGAGGTGGGggg > 1:10979141/1‑35 (MQ=255) agaAAGTTATTGAAGGGGCTTACGAGGTGGGgggg > 1:1474389/1‑35 (MQ=255) agaAAGTTATTGAAGGGGCTTACGAGGAGGGgggg > 1:14576890/1‑35 (MQ=255) aaaGTTATTGAAGGGGCTTACGAGGTGGGgggggg > 1:4162291/1‑34 (MQ=255) aaaGTTATTGAAGGGGCTTACGAGGTGGGGGGGGt > 1:19171659/1‑35 (MQ=255) aaGTTATTGAAGGGGCTTACGAGGTGGTggggggt > 1:11353693/1‑33 (MQ=255) aaGTTATTGAAGGGGCTTACGAGGTGGTggggggt > 1:12716284/1‑33 (MQ=255) aaGTTATTGAAGGGGCTTACGAGGTGGTGGGGGtt < 1:5845881/35‑1 (MQ=255) aaGTTATTGAAGGGGCTTACGAGGTGGTGGGGGtt < 1:8478777/35‑1 (MQ=255) aaGTTATTGAAGGGGCTTACGAGGTGGTGGGGGtt > 1:12728785/1‑35 (MQ=255) aGTTATTGAAGGGGCTTACGAGGTGGTGGGGGttt < 1:2162732/35‑1 (MQ=255) aGTTATTGAAGGGGCTTACGAGGTGGGGGGGGgtt > 1:18983852/1‑35 (MQ=255) aGTTATTGAAGGGGCTTACGAGGTGGGGGGGGgtt > 1:16961308/1‑35 (MQ=255) gTTATTGAAGGGGCTTACGAGGTGGTGGGGGtttt < 1:20056006/35‑1 (MQ=255) gTTATTGAAGGGGCTTACGAGGTGGTGGGGGtttt < 1:10132769/35‑1 (MQ=255) ttATTGAAGGGGCTTACGAGGTGGTGGGGGttttt < 1:3048100/35‑1 (MQ=255) ttATTGAAGGGGCTTACGAGGTGGTGGGGGgtttt > 1:1022777/1‑35 (MQ=255) ttATTGAAGGGGCTTACGAGGTGGGGGGGGgtttt > 1:3933300/1‑35 (MQ=255) tATTGAAGGGGCTTACGAGGTGGTGGGGGGTTTTg > 1:14519738/1‑35 (MQ=255) aTTGAAGGGGCTTACGAGGTGGTGGGGGgttttta > 1:6831848/1‑33 (MQ=255) aTTGAAGGGGCTTACGAGGTGGGGGGGGgtttttg > 1:4327508/1‑33 (MQ=255) aTTGAAGGGGCTTACGAGGTGGGGGGGGGTTTTgt > 1:5346896/1‑34 (MQ=255) ttGAAGGGGCTTACGAGGTGGTGGGGGTTTTTGAc < 1:10683441/35‑1 (MQ=255) ttGAAGGGGCTTACGAGGTGGTGGGGGTTTTTGAc < 1:14601626/35‑1 (MQ=255) ttGAAGGGGCTTACGAGGTGGTGGGGGTTTTTGAc < 1:20293911/35‑1 (MQ=255) ttGAAGGGGCTTACGAGGTGGTGGGGGTTTTTGAc < 1:13371474/35‑1 (MQ=255) ttGAAGGGGCTTACGAGGTGGGGGGGGGTTTTGAc > 1:16455984/1‑35 (MQ=255) tGAAGGGGCTTACGAGGTGGGGGGGGGTTTTTAcc > 1:391589/1‑35 (MQ=255) tGAAGGGGCTTACGAGGTGGGGGGGGGTTTTGAcc > 1:5278429/1‑35 (MQ=255) gAAGGGGCTTACGAGGTGGTGGGGGTTTTTGACCg < 1:8656133/35‑1 (MQ=255) gAAGGGGCTTACGAGGTGGTGGGGGTTTTTGACCg < 1:11507504/35‑1 (MQ=255) aaGGGGCTTACGAGGTGGTGGGGGTTTTTGACCgg < 1:11472497/35‑1 (MQ=255) aaGGGGCTTACGAGGTGGTGGGGGTTTTTGACCgg > 1:11180938/1‑35 (MQ=255) aGGGGCTTACGAGGTGGTGGGGGTTTTTGACCGGa < 1:19466436/35‑1 (MQ=255) ggggCTTACGAGGTGGTGGGGGTTTTTGACCGGAt < 1:16408881/35‑1 (MQ=255) gggCTTACGAGGTGGTGGGGGTTTTTGACCGGAtt < 1:8683415/35‑1 (MQ=255) gggCTTACGAGGTGGTGGGGGTTTTTGACCGGAtt < 1:2779189/35‑1 (MQ=255) gggCTTACGAGGTGGTGGGGGTTTTTGACCGGAtt < 1:3673350/35‑1 (MQ=255) ggCTTACGAGGTGGTGGGGGTTTTTGACCGGATTg < 1:857933/35‑1 (MQ=255) cTTACGAGGTGGTGGGGGTTTTTGACCGGATTGAg < 1:9475039/35‑1 (MQ=255) cTTACGAGGTGGTGGGGGTTTTTGACCGGATTGAg > 1:1771377/1‑35 (MQ=255) cTTACGAGGTGGTGGGGGGTTTTTACCGGATTGAg > 1:18038924/1‑35 (MQ=37) ttACGAGGTGGTGGGGGTTTTTGACCGGATTGAgg < 1:1834682/35‑1 (MQ=255) tACGAGGTGGTGGGGGTTTTTGACCGGATTGAGGa < 1:15085159/35‑1 (MQ=255) aCGAGGTGGTGGGGGTTTTTGACCGGATTGAGGaa < 1:18312222/35‑1 (MQ=255) aCGAGGTGGTGGGGGTTTTTGACCGGATTGAGGaa > 1:14003431/1‑35 (MQ=255) cGAGGTGGTGGGGGTTTTTGACCGGATTGAGGaaa < 1:10471241/35‑1 (MQ=255) gAGGTGGTGGGGGTTTTTGACCGGATTGAGGaaaa < 1:3369155/35‑1 (MQ=255) gAGGTGGTGGGGGTTTTTGACCGGATCGAGGaaaa < 1:4266494/35‑1 (MQ=255) aGGTGGTGGGTGTTTTTTACCGGATTGGGGAAAAg > 1:606792/1‑35 (MQ=25) AGGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAg < 1:10350784‑M1/35‑1 (MQ=255) AGGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAg > 1:10874635‑M1/1‑35 (MQ=255) AGGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAg > 1:13360686‑M1/1‑35 (MQ=255) AGGTGGTGGGGGTTGTTGACCGGATTGAGGAAAAg > 1:17330895‑M1/1‑35 (MQ=255) AGGTGGTGGGGGGTTTTGACCGGATTGAGgaaaat < 1:12343930‑M1/35‑2 (MQ=255) AGGTGGGGGGGGTTTTTGACCGGATTGAGGAAAAg < 1:19477543‑M1/35‑1 (MQ=255) | AATGTGGTGGAGAAAGTTATTGAAGGGGCTTACGAGGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAG > REL606/3006417‑3006485 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |