New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2880569 = | 60 (0.580) | 11 (0.140) | 4/36 | NT | 19.1% | coding (101/1230 nt) | yqeG | predicted transporter |
? | REL606 | 3287064 = | 48 (0.620) | coding (1197/2337 nt) | arcB | hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
CGACCAGAGCAGTAATAAACAGGACCACAGCCCCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2880607‑2880569 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT > REL606/3287064‑3287097 ccACCAGAGCAGTAATAAACAGGACCACAGCCCCT > 1:7820264/3‑35 CGACCAGAGCAGTAATAAACAGGAACACAGCCCCT > 1:4790928/1‑35 GACCAGAGCAGTAATAAACAGGACCACAGCCCCTG > 1:5221244/1‑35 GACCAGAGCAGTAATAAACAGGACCACAGCCCCTG > 1:14736254/1‑35 GACCAGAGCAGTAATAAACAGGACCACAGCCCCTG > 1:8247438/1‑35 GACCAGAGCAGTAATAAACAGGACCACAGCCCCTG > 1:20404895/1‑35 CCAGAGCAGTAATAAACAGGACCACAGCCCCTGCC > 1:10643793/1‑35 CAGAGCAGTAATAAACAGGACCACAGCCCCTGCCG > 1:15725580/1‑35 CAGAGCAGTAATAAACAGGACCACAGCCCCTGCCG > 1:16510414/1‑35 CAGAGCAGTAATAAACAGGACCACAGCCCCTGCCG > 1:19284041/1‑35 tcCCACAGCCCCTGCCGTAAACGCGTCCCGTCGGT < 1:2308832/33‑1 tcCCACAGCCCCTGCCGTAAACGCGTCCCGTCGGT < 1:11471076/33‑1 ccCCACAGCCCCTGCCGTAAACGCGTCCCGTCGGT < 1:15978071/33‑1 cCCACAGGCCCTGCCGTAAACGCGTCCCGTCGGTA < 1:15580750/34‑1 cccCAGCCCCTGCCGTAAACGCGTCCCGTCGGTAA < 1:12764582/32‑1 CCACAGCCCCTGCCGTAAACGCGTCCCGTCGGTAA < 1:3544434/35‑1 ccCAGCCCCTGCCGTAAACGCGTCCCGTCGGTAAT < 1:6864622/33‑1 CACAGCCCCTGCCGTAAACGCGTCCCGTCGGTAAT < 1:5312267/35‑1 cCAGCCCCTGCCGTAAACGCGTCCCGTCGGTAATG < 1:52181/34‑1 ACAGCCCCTGCCGTAAACGCGTCCCGTCGGTAATG < 1:16954208/35‑1 ggGCCCCTGCCGTAAACGCGTCCCGTCGGTAATGA < 1:18002285/33‑1 cgGCCCCTGCCGTAAACGCGTCCCGTCGGTAATGA < 1:1350822/33‑1 CAGCCCCTGCCGTAAACGCGTCCCGTCGGTAATGA < 1:12085552/35‑1 ggtCCCTGCCGTAAACGCGTCCCGTCGGTAATGAC < 1:6724584/32‑1 AGCCCCTGCCGTAAACGCGTCCCGTCGGTAATGAC < 1:15025485/35‑1 CCCTGCCGTAAACGCGTCCCGTCGGTAATGACCTG < 1:15579451/35‑1 CCCTGCCGTAAACGCGTCCCGTCGGTAATGACCTG < 1:20347724/35‑1 CCCTGCCGTAAACGCGTCCCGTCGGTAATGACCTG < 1:2335118/35‑1 CCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGA < 1:11398269/35‑1 CCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGA < 1:18274853/35‑1 CTGCCGTAAACGCGTCCCGTCGTTAATGACCTGAT > 1:18477769/1‑35 CTGCCGTAAACGCGTCCCGTCGGTAATGACCTGAT < 1:12452400/35‑1 CTGCCGTAAACGCGTCCCGTCGGTAATGACCTGAT < 1:4450937/35‑1 CTGCCGTAAACGCGTCCCGTCGGTAATGACCTGAT < 1:11907427/35‑1 CTGCCGTAAACGCGTCCCGTCGGTAATGACCCGAT > 1:14437258/1‑35 CTGCCGTAAACGCGTCCCGTCGGGAATGACCTGAT > 1:4857428/1‑35 TGCCGTAAACGCGTCCCGTCGGTAATGACCTGATG < 1:12790138/35‑1 TGCCGTAAACGCGTCCCGTCGGTAATGACCTGATG < 1:20391470/35‑1 TGCCGTAAACGCGTCCCGTCGGGAATGACCTGATG > 1:6204887/1‑35 CCGTAAACGCGTCCCGTCGGTAATGACCTGATGCG > 1:418492/1‑35 CCGTAAACGCGTCCCGTCGGGAATGACCTGATGCG > 1:12715676/1‑35 CCGTAAACGCGTCCCGTCGGGAATGACCTGATGCG > 1:16058615/1‑35 CGTAAACGCGTCCCGTCGGTAATGACCTGATGCGG < 1:18605720/35‑1 GTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT < 1:835696/35‑1 GTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT > 1:6788530/1‑35 GTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT < 1:6005754/35‑1 GTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT < 1:2000805/35‑1 GTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT < 1:1905398/35‑1 GTAAACGCGTCCCGTCGGGAATGACCTGATGCGGg > 1:8002158/1‑34 CGACCAGAGCAGTAATAAACAGGACCACAGCCCCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2880607‑2880569 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT > REL606/3287064‑3287097 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |