New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2583271 | NA (NA) | 32 (0.530) | 3/28 | NT | 49.9% | intergenic (‑441/+11) | iscR/yfhQ | DNA‑binding transcriptional repressor/predicted methyltransferase |
? | REL606 | = 3686161 | 55 (0.540) | coding (401/741 nt) | yiaT | hypothetical protein |
Only 100 of 208 total aligned reads displayed.
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGgcaacggctg‑‑‑‑‑‑‑‑‑ > REL606/2583238‑2583271 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAACGGCTGGGTGGGGGA < REL606/3686161‑3686143 TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:9963353/1‑35 TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:8659788/1‑35 TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG < 1:20594243/35‑1 TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG < 1:19859616/35‑1 TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:18904059/1‑35 TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:16555565/1‑35 TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG < 1:15809410/35‑1 TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:14144478/1‑35 TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG < 1:12820538/35‑1 TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG < 1:11494923/35‑1 TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG < 1:11127429/35‑1 AGGCCTTATAAGACGCATTACGCGTCGCATCAGGC > 1:15477949/1‑35 AGGCCTGATAAGACGCATTATGCGTCGCATCAGGC > 1:10653076/1‑35 AGGCCTGATAAGACGCATTACGCGTCGCATCAGGC < 1:16901007/35‑1 AGGCCTGATAAGACGCATTACGCGTCGCATCAGGC < 1:3020346/35‑1 AGGCCTGATAAGACGCATTACGCGTCGCATCAGGC < 1:14533479/35‑1 AGGCCTGATAAGACGCATTACGCGTCGCATCAGGC > 1:1922724/1‑35 GGCCTGATAAGACGCATTACGCGTCGCATCAGGCA < 1:11833382/35‑1 GGCCTGATAAGACGCATTACGCGTCGCATCAGGCA > 1:3210125/1‑35 GGCCTGATAAGACGCATTACGCGTCGCATCAGGCA < 1:7284933/35‑1 GGCCTGATAAGACGCATTACGCGTCGCATCAGGCA < 1:14018855/35‑1 GGCCTGATAAGACGCATTACGCGTCGCATCAGGCA > 1:5636643/1‑35 GCCTGATAAGACGCATTACGCGTCGCATCAGGCAA > 1:2163620/1‑35 GCCTGATAAGACGCATTACGCGTCGCATCAGGCAA < 1:19377031/35‑1 GCCTGATAAGACGCATTACGCGTCGCATCAGGCAA > 1:6081075/1‑35 GCCTGATAAGACGCATTACGCGTCGCATCAGGCAA > 1:8537222/1‑35 GCCTGATAAGACGCATTACGCGTCGCATCAGGCAA > 1:16671964/1‑35 GCCTGATAAGACGCATTACGCGTCGCATCAGGCAA > 1:9384337/1‑35 CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC > 1:19029707/1‑35 CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC < 1:18019542/35‑1 CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC < 1:3629265/35‑1 CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC < 1:14472761/35‑1 CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC > 1:5861182/1‑35 CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC < 1:6737280/35‑1 CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC < 1:9499053/35‑1 CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC > 1:11657467/1‑35 CTGATAAGACGCATTACGCGTCGCATCAGGCAAag < 1:16056878/35‑3 CTGATAAGACGCATTACGCGTCGCATCAGGCAACG < 1:18214455/35‑1 CTGATAAGACGCATTACGCGTCGCATCAGGCAACG > 1:92857/1‑35 CTGATAAGACGCATTACGCGTCGCATCAGGCAACG > 1:18064223/1‑35 TGATAAGACGCATTACGCGTCGCATCAGGCAACGG < 1:1056423/35‑1 TGATAAGACGCATTACGCGTCGCATCAGGCAACGG < 1:643100/35‑1 TGATAAGACGCATTACGCGTCGCATCAGGCAACGG > 1:7705043/1‑35 TGATAAGACGCATTACGCGTCGCATCAGGCAACGG < 1:14840055/35‑1 GATAAGACGCATTACGCGTCGCATCAGGCAACGGC > 1:845169/1‑35 GATAAGACGCATTACGCGTCGCATCAGGCAACGGC > 1:2350919/1‑35 GATAAGACGCATTACGCGTCGCATCAGGCAACGGC < 1:8879568/35‑1 ATAAGACGCATTACGCGTCGCATCAGGCAACGGCT < 1:13739306/35‑1 ATAAGACGCATTACGCGTCGCATCAGGCAACGGCT > 1:5428367/1‑35 ATAAGACGCATTACGCGTCGCATCAGGCAACGGCT < 1:445628/35‑1 ATAAGACGCATTACGCGTCGCATCAGGCAAAGGCT < 1:15997001/35‑1 ATAAGACGCATTACGCGTCGCATAAGGCAACGGCT < 1:20069985/35‑1 TAAGACGCATTACGCGTCGCATCAGGCAACGGCTG < 1:6902223/35‑1 TAAGACGCATTACGCGTCGCATCAGGCAACGGCTG > 1:11391053/1‑35 TAAGACGCATTACGCGTCGCATCAGGCAACGGCTG > 1:4371293/1‑35 TAAGACGCATTACGCGTCGCATCAGGCAACGGCTG > 1:15048114/1‑35 TAAGACGCATTACGCGTCGCATCAGGCAACGGCTG > 1:17485590/1‑35 AAGACGCATTACGCGTCGCATCAGGCAACGGCTGG > 1:17345753/1‑35 AAGACGCATTACGCGTCGCATCAGGCAACGGCTGG > 1:342602/1‑35 AAGACGCATTACGCGTCGCATCAGGCAACGGCTGG > 1:18640028/1‑35 AAGACGCATTACGCGTCGCATCAGGCAACGGCTGG > 1:14886805/1‑35 AGACGCATTACGCGTCGCATCAGGCAACGGCTGGG > 1:17827781/1‑35 AGACGCATTACGCGTCGCATCAGGCAACGGCTGGG > 1:8022352/1‑35 AGACGCATTACGCGTCGCATCAGGCAACGGCTGGG > 1:292020/1‑35 AGACGCATTACGCGTCGCATCAGGCAACGGCTGGG > 1:15327606/1‑35 AGACGCATTACGCGTCGCATCAGGCAACGGCTGGG > 1:2648281/1‑35 AGACGCATTACGCGTCGCATCAGGCAACGGCTGGG > 1:15600769/1‑35 GACGCATTACGCGTCTCATCAGGCAACGGCTGGGg > 1:12672594/1‑34 GACGCATTACGCGTCTCATCAGGCAACGGCTGGGg > 1:5323601/1‑34 GACGCATTACGCGTCGCATCAGGCAACGGCTGGGg > 1:14330618/1‑34 GACGCATTACGCGTCGCATCAGGCAACGGCTGGGg > 1:2748991/1‑34 ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg > 1:10314786/1‑33 ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg > 1:13294247/1‑33 ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg > 1:11006735/1‑33 ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg > 1:9711751/1‑33 ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg > 1:8297873/1‑33 ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg > 1:1776677/1‑33 ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg > 1:696539/1‑33 CGCATTACGCGTCGCATCAGGCAACGGCTGGGGGG > 1:13362243/1‑35 CGCATTACGCGTCGCATCAGGCAACGGCTGGGGGG > 1:1623568/1‑35 CGCATTACGCGTCGCATCAGGCAACGGCTGGGGGG > 1:20453023/1‑35 CGCATTACGCGTCGCATCAGGCAACGGCTGGGGGG > 1:13938402/1‑35 GCATTACGCGTCGCATCAGGCAACGGCTGGGGGGG > 1:10070073/1‑35 GCATTACGCGTCGCATCAGGCAACGGCTGGGGGGG > 1:7228551/1‑35 GCATTACGCGTCGCATCAGGCAACGGCTGGGGGGG > 1:4892767/1‑35 GCATTACGCGTCGCATCAGGCAACGGCTGGGGGGG > 1:4021739/1‑35 GCATTACGCGTCGCATCAGGCAACGGCTGGGGGGG > 1:14693484/1‑35 CATTACGCGTCGCATCAGGCAACGGCTGGGGGGGG > 1:716638/1‑35 CATTACGCGTCGCATCAGGCAACGGCTGGGGGGGG > 1:1310974/1‑35 CATTACGCGTCGCATCAGGCAACGGCTGGGGGGGG > 1:12150379/1‑35 CATTACGCGTCGCATCAGGCAACGGCTGGGGGGGG > 1:17035659/1‑35 ATTACGCGTCGCATCAGGCAACGGCTGGGGGGGGG > 1:3837067/1‑35 ATTACGCGTCGCATCAGGCAACGGCTGGGGGGGGG > 1:2536266/1‑35 ATTACGCGTCGCATCAGGCAACGGCTGGGGGGGGG > 1:20491208/1‑35 ATTACGCGTCGCATCAGGCAACGGCTGGGGGGGGG > 1:15859047/1‑35 ATTACGCGTCGCATCAGGCAACGGCTGGGGGGGGG > 1:1003579/1‑35 TTACGCGTCGCATCAGGCAACGGCTGGGGGGGGGg > 1:6814173/1‑34 TTACGCGTCGCATCAGGCAACGGCTGGGGGGGGGg > 1:1365427/1‑34 TTACGCGTCGCATCAGGCAACGGCTGGGGGGGGGg > 1:20315824/1‑34 TTACGCGTCGCATCAGGCAACGGCTGGGGGGGGGg > 1:12051679/1‑34 TAGGCCTGATAAGACGCATTACGCGTCGCATCAGgcaacggctg‑‑‑‑‑‑‑‑‑ > REL606/2583238‑2583271 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAACGGCTGGGTGGGGGA < REL606/3686161‑3686143 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |