New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2533712 =95 (0.920)9 (0.130) 3/32 NT 14.4% coding (987/2007 nt) hyfR DNA‑binding transcriptional activator, formate sensing
?REL606 3554407 = 44 (0.640)coding (321/384 nt) yhhH hypothetical protein

Only 100 of 180 total aligned reads displayed.

TGACCGATTTGCAGGAAAGTTTGCAGCAAGAAAACCACCAGCTTAGCGAGCAGCTCCTTTCGAATCTGG  >  REL606/2533678‑2533746
                                  |                                   
tGACCGATTTGCAGGAAAGTTTGCAGCAAGAAAac                                     >  1:9825381/1‑35 (MQ=255)
tGACCGATTTGCAGGAAAGTTTGCAGCAAGAAAac                                     >  1:10321707/1‑35 (MQ=255)
tGACCGATTTGCAGGAAAGTTTGCAGCAAGAAAac                                     >  1:15522652/1‑35 (MQ=255)
 gACCGATTTGCAGGAAAGTTTGCAGCAAGAAAacc                                    <  1:4562835/35‑1 (MQ=255)
 ccatcatttttgcctatttctataataaaaacccc                                    <  1:9250186‑M1/2‑1 (MQ=255)
 ccatcatttttgcctatttctataataaaaacccc                                    >  1:16992404‑M1/34‑35 (MQ=255)
  aCCGATTTGCAGGAAAGTTTGCAGCAAGAAAacca                                  <  1:5891479/35‑1 (MQ=255)
  aCCGATTTGCAGGAAAGTTTGCAGCAAGAAAacca                                  >  1:2308901/1‑35 (MQ=255)
  aCCGATTTGCAGGAAAGTTTGCAGCAAGAAAacca                                  <  1:2065920/35‑1 (MQ=255)
   ccGATTTGCAGGAAAGTTTGCAGCAAGAAAaccac                                 >  1:957164/1‑35 (MQ=255)
   ccGATTTGCAGGAAAGTTTGCAGCAAGAAAaccac                                 >  1:2218009/1‑35 (MQ=255)
   ccGATTTGCAGGAAAGTTTGCAGCAAGAAAaccac                                 <  1:17205737/35‑1 (MQ=255)
   atcatttttgcctatttctataataaaaaccccac                                 <  1:19839807‑M1/4‑1 (MQ=255)
   atcatttttgcctatttctataataaaaaccccac                                 <  1:19106268‑M1/4‑1 (MQ=255)
   atcatttttgcctatttctataataaaaaccccac                                 <  1:16157264‑M1/4‑1 (MQ=255)
    tcatttttgcctatttctataataaaaaccccacc                                <  1:7692554‑M1/5‑1 (MQ=255)
    cGATTTGCAGGAAAGTTTGCAGCAAGAAAaccacc                                >  1:1938864/1‑35 (MQ=255)
     catttttgcctatttctataataaaaaccccacca                               >  1:3434711‑M1/30‑35 (MQ=255)
     catttttgcctatttctataataaaaaccccacca                               >  1:1875117‑M1/30‑35 (MQ=255)
      atttttgcctatttctataataaaaaccCCACCAg                              <  1:18004504‑M1/7‑1 (MQ=255)
      atttttgcctatttctataataaaaaccCCACCAg                              <  1:1953386‑M1/7‑1 (MQ=255)
      aTTTGCAGGAAAGTTTGCAGCAAGAAAACCACCAg                              >  1:14868210/1‑35 (MQ=255)
       tttttgcctatttctataataaaaaccCCACCAGc                             <  1:11990589‑M1/8‑1 (MQ=255)
       tttttgcctatttctataataaaaaccCCACCAGc                             >  1:13288128‑M1/28‑35 (MQ=255)
        ttGCAGGAAAGTTTGCAGCAAGAAAACCACCAGCt                            >  1:3376986/1‑35 (MQ=255)
        ttGCAGGAAAGTTTGCAGCAAGAAAACCACCAGCt                            >  1:17546875/1‑35 (MQ=255)
        ttGCAGGAAAGTTTGCAGCAAGAAAACCACCAGCt                            >  1:6465107/1‑35 (MQ=255)
        ttGCAGGAAAGTTTGCAGCAAGAAAACCACCAGCt                            >  1:19905984/1‑35 (MQ=255)
        ttGCAGGAAAGTTTGCAGCAAGAAAACCACCAGCt                            >  1:8439772/1‑35 (MQ=255)
        ttGCAGGAAAGTTTGCAGCAAGAAAACCACCAGCt                            <  1:8497965/35‑1 (MQ=255)
        ttGCAGGAAAGTTTGCAGCAAGAAAACCACCAGCt                            >  1:15703175/1‑35 (MQ=255)
         tGCAGGAAAGTTTGCAGCAAGAAAACCACCAGCtt                           >  1:2985216/1‑35 (MQ=255)
          gCAGGAAAGTTTGCAGCAAGAAAACCACCAGCTTa                          >  1:8688468/1‑35 (MQ=255)
          gCAGGAAAGTTTGCAGCAAGAAAACCACCAGCTTa                          >  1:14058854/1‑35 (MQ=255)
          gCAGGAAAGTTTGCAGCAAGAAAACCACCAGCTTa                          >  1:6873365/1‑35 (MQ=255)
          gCAGGAAAGTTTGCAGCAAGAAAACCACCAGCTTa                          <  1:12894152/35‑1 (MQ=255)
           cAGGAAAGTTTGCAGCAAGAAAACCACCAGCTTAg                         >  1:8950236/1‑35 (MQ=255)
           cAGGAAAGTTTGCAGCAAGAAAACCACCAGCTTAg                         >  1:1597027/1‑35 (MQ=255)
            aGGAAAGTTTGCAGCAAGAAAACCACCAGCTTAGc                        >  1:15175556/1‑35 (MQ=255)
            aGGAAAGTTTGCAGCAAGAAAACCACCAGCTTAGc                        >  1:16792752/1‑35 (MQ=255)
            aGGAAAGTTTGCAGCAAGAAAACCACCAGCTTAGc                        >  1:501704/1‑35 (MQ=255)
            aGGAAAGTTTGCAGCAAGAAAACCACCAGCTTAGc                        >  1:9298483/1‑35 (MQ=255)
            aGGAAAGTTTGCAGCAAGAAAAACACCAGCTTAGc                        <  1:5129887/35‑1 (MQ=255)
             ggAAATTTTGCAGCAAGAAAACCACCAGCTTAGCg                       >  1:6687710/1‑35 (MQ=255)
             ggAAAGTTTGCAGCAAGAAAACCACCAGCTTAGCg                       >  1:2433339/1‑35 (MQ=255)
             ggAAAGTTTGCAGCAAGAAAACCACCAGCTTAGCg                       >  1:5321128/1‑35 (MQ=255)
               aaaGTTTGCAGCAAGAAAACCACCAGCTTATCGag                     >  1:13575522/1‑35 (MQ=255)
               aaaGTTTGCAGCAAGAAAACCACCAGCTTAGCGag                     >  1:18120051/1‑35 (MQ=255)
               aaaGTTTGCAGCAAGAAAACCACCAGCTTAGCGag                     >  1:11115543/1‑35 (MQ=255)
                aaGTTTGCAGCAAGAAAACCACCAGCTTAGCGagc                    >  1:5474903/1‑35 (MQ=255)
                aaGTTTGCAGCAAGAAAACCACCAGCTTAGCGagc                    >  1:16198910/1‑35 (MQ=255)
                 aGTTTGCAGCAAGAAAACCACCAGCTTAGCGagca                   >  1:5367660/1‑35 (MQ=255)
                 aGTTTGCAGCAAGAAAACCACCAGCTTAGCGagca                   >  1:11191814/1‑35 (MQ=255)
                 aGTTTGCAGCAAGAAAACCACCAGCTTAGCGagca                   >  1:13802264/1‑35 (MQ=255)
                 aGTTGGCAGCAAGAAACCCACCAGCTTAGCGagca                   <  1:10072445/35‑1 (MQ=37)
                  gTTTGCAGCAATAAAACCACCAGCTTAGCGagcag                  >  1:19127514/1‑35 (MQ=255)
                   tttGCAGCAAGAAAACCACCAGCTTAGCGagcagc                 >  1:5725449/1‑35 (MQ=255)
                    ttGCAGCAAGAAAACCACCAGCTTAGCGAGCAGCt                >  1:2153187/1‑35 (MQ=255)
                     tGCAGCAAGAAACCCACAAGCTTAGCGAGCAGCTc               <  1:20052567/35‑1 (MQ=38)
                     tGCAGCAAGAAAACCACCAGCTTAGCGAGCAGCTc               >  1:4943685/1‑35 (MQ=255)
                      gcagcaAGAAAACCACCAGCTTAGCGAGCAGCTcc              >  1:11885507/1‑35 (MQ=255)
                      gcagcaAGAAAACCACCAGCTTAGCGAGCAGCTcc              >  1:16886239/1‑35 (MQ=255)
                       cagcaAGAAAACCACCAGCTTAGCTAGCAGCTCCt             >  1:1021725/1‑35 (MQ=255)
                       cagcaAGAAAACCACCAGCTTAGCGAGCAGCTCCt             >  1:4529914/1‑35 (MQ=255)
                        agcaaaaaccCCACCAGCTTAGCGAGCAGCTCCtt            >  1:9151‑M1/11‑35 (MQ=255)
                        agcaAGAAAACCACCAGCTTAGCGAGCAGCTCCtt            >  1:4442916/1‑35 (MQ=255)
                        aacaAAAAACCCACCAGCTTAGCGAGAAGCTCCtt            <  1:3770432/33‑1 (MQ=25)
                        aaaaaaaaccCCACCAGCTTAGCGAGCAGCTCCtt            >  1:4106208‑M1/11‑35 (MQ=255)
                         gcaAGAAAACCACCAGCTTAGCGAGCAGCTCCttt           >  1:8898256/1‑35 (MQ=255)
                         gcaAGAAAACCACCAGCTTAGCGAGCAGCTCCttt           >  1:18510590/1‑35 (MQ=255)
                         aaaaaaaccCCACCAGCTTAGCGAGCAGCTCCttt           >  1:1155497‑M1/10‑35 (MQ=255)
                          caAGAAAACCACCAGCTTAGCGAGCAGCTCCTTTc          >  1:13020060/1‑35 (MQ=255)
                          caAGAAAACCACCAGCTTAGCGAGCAGCTCCTTTc          >  1:7196291/1‑35 (MQ=255)
                          caAGAAAACCACCAGCTTAGCGAGCAGCTCCTTTc          >  1:12105226/1‑35 (MQ=255)
                          aaaaaaacCCACCAGCTTAGCGAGCAGCTCCTTTc          >  1:18930214‑M1/9‑35 (MQ=255)
                           aaaaaacCCACCAGCTTAGCGAGCAGCTCCTTTCg         >  1:10521608‑M1/8‑35 (MQ=255)
                           aaGAAAACCACCAGCTTAGCGAGCAGCTCCTTTCg         >  1:3656132/1‑35 (MQ=255)
                            aaaaaaCCAACCAGCTTAGCGAGCAGCTCCTTTCg         <  1:2037986/33‑1 (MQ=25)
                            aGAAAACCACCAGCTTAGCGAGCAGCTCCTTTCGa        >  1:1702365/1‑35 (MQ=255)
                            aGAAAACCACCAGCTTAGCGAGCAGCTCCTTTCGa        >  1:323634/1‑35 (MQ=255)
                             gAAAACCACCAGCTTAGCGAGCAGCTCCTTTCGaa       >  1:14218981/1‑35 (MQ=255)
                             aaaccCCACCAGCTTAGCGAGCAGCTCCTTTCGaa       >  1:10820514‑M1/6‑35 (MQ=255)
                             aaaacCCACCAGCTTAGCGAGCAGCTCCTTTCGaa       >  1:13794622‑M1/6‑35 (MQ=255)
                              aaacCCACCAGCTTAGCGAGCAGCTCCTTTCGAAt      >  1:8031583‑M1/5‑35 (MQ=255)
                              aaaaCCACCAGCTTAGCGAGCAGCTCCTTTCGAAt      >  1:13359267/1‑35 (MQ=255)
                              aaaaCCACCAGCTTAGCGAGCAGCTCCTTTCGAAt      >  1:18643144/1‑35 (MQ=255)
                               aaaCCACCAGCTTAGCGAGCAGCTCCTTTCGAATc     >  1:11484738/1‑35 (MQ=255)
                               aaaCCACCAGCTTAGCGAGCAGCTCCTTTCGAATc     >  1:19195671/1‑35 (MQ=255)
                               aaaCCACCAGCTTAGCGAGCAGCTCCTTTCGAATc     >  1:8666521/1‑35 (MQ=255)
                                aaCCACCAGCTTAGCGAGCAGCTCCTTTCGAATCt    >  1:2650310/1‑35 (MQ=255)
                                aaCCACCAGCTTAGCGAGCAGCTCCTTTCGAATCt    >  1:14562823/1‑35 (MQ=255)
                                aaCCACCAGCTTAGCGAGCAGCTCCTTTCGAATCt    >  1:5529607/1‑35 (MQ=255)
                                aaCCACCAGCTTAGCGAGCAGCTCCTTTCGAATCt    >  1:5430149/1‑35 (MQ=255)
                                 cCCACCAGCTTAGCGAGCAGCTCCTTTCGAATCTg   >  1:19046285‑M1/2‑35 (MQ=255)
                                 cCCACCAGCTTAGCGAGCAGCTCCTTTCGAATCTg   >  1:15364957‑M1/2‑35 (MQ=255)
                                 accaccAGCTTAGCGAGCAGCTCCTTTCGAATCTg   >  1:3154302/1‑35 (MQ=255)
                                 accaccAGCTTAGCGAGCAGCTCCTTTCGAATCTg   >  1:4033690/1‑35 (MQ=255)
                                  CCACCAGCTTAGCGAGCAGCTCCTTTCGAATCTgg  >  1:14328098‑M1/1‑35 (MQ=255)
                                  CCACCAGCTTAGCGAGCAGCTCCTTTCGAATCTgg  <  1:9060249‑M1/35‑1 (MQ=255)
                                  CCACCAGCTTAGCGAGCAGCTCCTTTCGAATCTgg  <  1:12814568‑M1/35‑1 (MQ=255)
                                  |                                   
TGACCGATTTGCAGGAAAGTTTGCAGCAAGAAAACCACCAGCTTAGCGAGCAGCTCCTTTCGAATCTGG  >  REL606/2533678‑2533746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.