Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,775,842 | 0 | T→A | 100.0% | 0.1 | 3 | intergenic (‑12/+237) | insJ‑3/cysH | IS150 hypothetical protein/phosphoadenosine phosphosulfate reductase |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (2/0): ref base (1/0): total (3/0) |
GGGTATTTTGGCTTTGACATATTAGGGGCT‑ATTCCATTTCATCGTCCAACAAAATGGGTGC > REL606/2775811‑2775871 | gggTATTTTGGCTTTGACATATTAGGGGCT‑AATct > 1:19531613/1‑34 (MQ=0) gTATTTTGGCTTTGACATATTAGGGGCT‑AATTCAt > 1:8769005/1‑35 (MQ=1) gTATTTTGGCTTTGACATATTAGGGGCT‑AATTCAt > 1:3803619/1‑35 (MQ=1) gTATTTTGGCTTTGACATATTAGGGGCT‑AATTCAt > 1:3066492/1‑35 (MQ=1) gTATTTTGGCTTTGACATATTAGGGGCT‑AATTCAt > 1:20462309/1‑35 (MQ=1) gTATTTTGGCTTTGACATATTAGGGGCT‑AATTCAt > 1:19539415/1‑35 (MQ=1) gTATTTTGGCTTTGACATATTAGGGGCT‑AATTCAt > 1:10196218/1‑35 (MQ=1) gTATTTTGGCTTTGACATATTAGGGGCT‑AATTCAt > 1:11226991/1‑35 (MQ=1) gTATTTTGGCTTTGACATATTAGGGGCT‑AATTCAt > 1:12898767/1‑35 (MQ=1) gTATTTTGGCTTTGACATATTAGGGGCT‑AATTCAt > 1:12919419/1‑35 (MQ=1) gTATTTTGGCTTTGACATATTAGGGGCT‑AATACAt > 1:3610114/1‑35 (MQ=1) gTATTTTGGCTTTGACATATTAGGGGCT‑AAACCAt > 1:6634321/1‑35 (MQ=1) ttttGGCTTTGACATATTAGGGGCT‑AATTCCTTTc > 1:6658228/1‑35 (MQ=1) ttttGGCTTTGACATATTAGGGGCT‑AATTCCTTTc > 1:15329371/1‑35 (MQ=1) ttttGGCTTTGACATATTAGGGGCT‑AATTCCTTTc > 1:14319577/1‑35 (MQ=1) tttGGCTTTGACATATTAGGGGCT‑AATCCActtta > 1:19625523/1‑33 (MQ=1) tttGGCTTTGACATATTAGGGGCT‑AATACAATTct > 1:10990167/1‑34 (MQ=1) ttGGCTTTGACATATTAGGGGCT‑AAATCATTTctt > 1:13044533/1‑33 (MQ=1) ttGGCTTCGACATATTAGGGGCT‑AATCCACTTTAt > 1:20486401/1‑35 (MQ=0) tGGCTTTGACATATTAGGGGCT‑AATTCATTTTAtt > 1:4306105/1‑34 (MQ=1) tGGCTTTGACATATTAGGGGCT‑AATTCATTTTAtt > 1:8726934/1‑34 (MQ=1) tGGCTTTGACATATTAGGGGCT‑AATGCACTTTATc > 1:15182614/1‑35 (MQ=0) ggCTTTGACATATTAGGGGCT‑AATTCATTTTAttg > 1:15927886/1‑33 (MQ=1) ggCTTTGACATATTAGGGGCT‑AATCCCTTTTAttg > 1:5750152/1‑33 (MQ=1) gCTTTGACATATTAGGGGCTAATCCCATTTCTTcc > 1:12383780/1‑34 (MQ=0) tGACATATTAGGGGCT‑AATCCATTTCATCGCccca > 1:11441091/1‑33 (MQ=1) ggCT‑ATTCCATTTCATCGTCCAACAAAATCGGGGc > 1:13894126/1‑35 (MQ=1) | GGGTATTTTGGCTTTGACATATTAGGGGCT‑ATTCCATTTCATCGTCCAACAAAATGGGTGC > REL606/2775811‑2775871 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |