New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 213184671 (0.690)4 (0.040) 3/46 NT 7.0% coding (848/1053 nt) fbaB fructose‑bisphosphate aldolase
?REL606 2517490 = 38 (0.390)coding (76/864 nt) ypfJ hypothetical protein

CCGCCTTTACCGCTTGGCAGGCGAAAACCGGGACCGCCCATAGATGGACCACCAGAGCTGTTGCGCCTG  >  REL606/2517456‑2517524
                                  |                                  
ccGCCTTTACCGCTTGGCAGGGGAAAACCGGGAcc                                    >  1:15988176/1‑35 (MQ=255)
ccGCCTTTACCGCTTGGCAGGCGAAAACCGGGAcc                                    <  1:9568770/35‑1 (MQ=255)
ccGCCTTTACCGCTTGGCAGGCGAAAACCGGGAcc                                    <  1:18555468/35‑1 (MQ=255)
ccGCCTTTACCGCTTGGCAGGCGAAAACCCGGGcc                                    >  1:12926155/1‑35 (MQ=37)
ccGCCTTTACCGCTTGGCAGGCGAAAACAGGGAcc                                    <  1:5251363/35‑1 (MQ=255)
ccGCCATTACCGCTTGGCAGGCGAAAACCGGGAcc                                    <  1:20236594/35‑1 (MQ=255)
acGCCTTTACCGCTTGGCAGGCGAAAACCGGGAcc                                    <  1:5287364/34‑1 (MQ=255)
 cgacTTTACCGCTTGGCAGGAGAAAACCGGGACCg                                   <  1:19991228/32‑1 (MQ=37)
 cGCCTTTACCGCTTGGCAGGCGAAAACCGGGACCg                                   <  1:19984706/35‑1 (MQ=255)
 cGCCTTTACCGCTTGGCAGGCGAAAACCGGGACCg                                   >  1:16561103/1‑35 (MQ=255)
 cGCCTTTACCGCTTGGCAGGCGAAAACCGGGACCg                                   >  1:9094786/1‑35 (MQ=255)
 cGCCTTTAACGCTTGGCAGGCGAAAACCGGGACCg                                   <  1:8371531/35‑1 (MQ=255)
  gCCTTTACCGCTTGGCAGGCGAAAACCGGGACCGc                                  >  1:6253157/1‑35 (MQ=255)
    cTTTCCCGCTTGGCAGGCGAAAACCGGGACCGccc                                <  1:17726616/35‑1 (MQ=255)
    cTTTACCGCTTGGCAGGTGAAAACCGGGACCGccc                                >  1:14985111/1‑35 (MQ=255)
    cTTTACCGCTTGGCAGGCGAAAACCGGGACCGccc                                >  1:19529368/1‑35 (MQ=255)
     tttACCGCTTGGCAGGCGAAAACCGGGACCGCCCa                               <  1:6568629/35‑1 (MQ=255)
     tttACCGCTTGGCAGGCGAAAACAGGGACCGCCCa                               <  1:14015757/35‑1 (MQ=255)
       tACCGCTTGGCAGGCGAAAACCGGGACCGCACATa                             <  1:13896453/35‑1 (MQ=255)
           gCTTGGCAGGCGAAAACCGGGACCGCCCATAGATg                         >  1:9043886/1‑35 (MQ=255)
              tGGCAGGCGAAAACCGGGACCGCCCATAGATGGac                      >  1:11616889/1‑35 (MQ=255)
                 cAGGCGAAACCCGGGCCCGCCCATAGATGGaccac                   <  1:20565438/35‑1 (MQ=37)
                 cAGGCGAAAACCGGGACCGCCCATAGATGGaccac                   >  1:2680993/1‑35 (MQ=255)
                 cAGGCGAAAACCGGGACCGCCCATAGATGGaccac                   >  1:468396/1‑35 (MQ=255)
                 cAGGCGAAAACCGGGACCGCCCATAGATGGaccac                   >  1:19527252/1‑35 (MQ=255)
                 cAGGCGAAAACCGGGACCGCCCATAGATGGaccac                   >  1:18870347/1‑35 (MQ=255)
                 cAGGCGAAAACCGGGACCGCCCATAGATGGaccac                   >  1:12853297/1‑35 (MQ=255)
                 cAGGCGAAAACCGGGACCGCACATAGATGGaccac                   <  1:4375963/35‑1 (MQ=255)
                  aGGCGAAAACCGGGACCGCCCATAGATGGaccacc                  >  1:20022866/1‑35 (MQ=255)
                  aGGCGAAAACCGGGACCGCCCATAGATGGaccacc                  >  1:1447686/1‑35 (MQ=255)
                  aGGCGAAAACCGGGACCGCCCATAGATGGaccacc                  >  1:1497308/1‑35 (MQ=255)
                  aGGCGAAAACCGGGACCGCCCATAGATGGaccacc                  >  1:18023740/1‑35 (MQ=255)
                  aGGCGAAAACCGGGACCGCCCATAGATGGaccacc                  >  1:1602468/1‑35 (MQ=255)
                   ggCGAAAACCGGGACCGCCCATAGATGGAccacca                 >  1:12970377/1‑35 (MQ=255)
                   ggCGAAAACCGGGACCGCCCATAGATGGAccacca                 >  1:8508104/1‑35 (MQ=255)
                    gCGAAAACCGGGACCGCCCATAGATGGACCACCag                >  1:5268351/1‑35 (MQ=255)
                    gCGAAAACCGGGACCGCCCATAGATGGACCACCag                >  1:1021838/1‑35 (MQ=255)
                     cGAAAACCGGGACCGCCCATAGATGGACCACCaga               >  1:15541980/1‑35 (MQ=255)
                     cGAAAACCGGGACCGCCCATAGATGGACCACCaga               >  1:17987218/1‑35 (MQ=255)
                      gAAAACCGGGACCGCCCATAGATGGACCACCagag              >  1:4987470/1‑35 (MQ=255)
                      gAAAACCGGGACCGCCCATAGATGGACCACCagag              >  1:11245834/1‑35 (MQ=255)
                      gAAAACCGGGACCGCCCATAGATGGACCACCagag              >  1:3906377/1‑35 (MQ=255)
                        aacccggcccCGCCCATAGATGGACCACCAGAGCt            <  1:9533917‑M2/25‑1 (MQ=255)
                        aaaCCGGGACCGCCCATAGATGGACCACCAGAGCt            >  1:1545116/1‑35 (MQ=255)
                        aaaCCGGGACCGCCCATAGATGGACCACCAGAGCt            >  1:1446103/1‑35 (MQ=255)
                        aaaCCGGGACCGCCCATAGATGGACCACCAGAGCt            >  1:10884005/1‑35 (MQ=255)
                        aaaCCGGGACCGCCCATAGATGGACCACCAGAGCt            >  1:10739574/1‑35 (MQ=255)
                        aaaCCGGGACCGCCCATAGATGGACCACCAGAGCt            >  1:4878567/1‑35 (MQ=255)
                        aaaCCGGGACCGCCCATAGATGGACCACCAGAGCt            >  1:797854/1‑35 (MQ=255)
                        aaaCCGGGACCGCCCATAGATGGACCACCAGAGCt            >  1:11389151/1‑35 (MQ=255)
                         acccggcccCGCCCATAGATGGACCACCAGAGCTg           <  1:8847089‑M2/26‑1 (MQ=255)
                         acccggcccCGCCCATAGATGGACCACCAGAGCTg           <  1:11478054‑M2/26‑1 (MQ=255)
                         aaCCGGGACCGCCCATAGATGGACCACCAGAGCTg           >  1:18783585/1‑35 (MQ=255)
                          cccggcccCGCCCATAGATGGACCACCAGAGCTGt          <  1:6092893‑M2/27‑1 (MQ=255)
                          aCCGGGACCGCCCATAGATGGACCACCAGAGCTGt          >  1:6880364/1‑35 (MQ=255)
                          aCCGGGACCGCCCATAGATGGACCACCAGAGCTGt          >  1:3752217/1‑35 (MQ=255)
                           cggggCCCGCCCATAGATGGACCACCAGAGCTGtt         <  1:18538726/33‑1 (MQ=38)
                           ccGGGACCGCCCATAGATTGACCACCAGATCTGtt         >  1:7012518/1‑35 (MQ=37)
                           ccGGGACCGCCCATAGATGGACCACCAGAGCTGtt         >  1:5336301/1‑35 (MQ=255)
                            cGGGACCGCCCATAGATGGACCACCAGAGCTGTTg        >  1:242099/1‑35 (MQ=255)
                            cGGGACCGCCCATAGATGGACCACCAGAGCTGTTg        >  1:2314590/1‑35 (MQ=255)
                            cGGGACCGCCCATAGATGGACCACCAGAGCTGTTg        >  1:1667323/1‑35 (MQ=255)
                            cGGGAACGCCCATAGATGGACCACCAGAGCTGTTg        <  1:13085555/35‑1 (MQ=255)
                             gggACCGCCCATAGATGGACCACCAGAGCTGTTgc       >  1:18215341/1‑35 (MQ=255)
                             gggACCGCCCATAGATGGACCACCAGAGCTGTTgc       >  1:13608024/1‑35 (MQ=255)
                             ggcccCGCCCATAGATGGACCACCAGAGCTGTTgc       <  1:20403071‑M2/30‑1 (MQ=255)
                             ggcccCGCCCATAGATGGACCACCAGAGCTGTTgc       <  1:20179815‑M2/30‑1 (MQ=255)
                             ggcccCGCCCATAGATGGACCACCAGAGCTGTTgc       <  1:1909173‑M2/30‑1 (MQ=255)
                              ggccCGCCCATAGATGGACCACCAGAGCTGTTgcg      <  1:271233‑M2/31‑1 (MQ=255)
                              ggACCGCCCATAGATGGACCACCAGAGCTGTTgcg      >  1:10201662/1‑35 (MQ=255)
                               gACCGCCCATAGATGGACCACCAGAGCTGTTgcgc     >  1:6319016/1‑35 (MQ=255)
                               gACCGCCCATAGATGGACCACCAGAGCTGTTgcgc     >  1:17811852/1‑35 (MQ=255)
                               gACCGCCCATAGATGGACCACCAGAGCTGTTgcgc     >  1:11331585/1‑35 (MQ=255)
                               cccCGCCCATAGATGGACCACCAGAGCTGTTgcgc     <  1:19893074‑M2/32‑1 (MQ=255)
                                ccCGCCCATAGATGGACCACCAGAGCTGTTGCGcc    <  1:11400163‑M2/33‑1 (MQ=255)
                                ccCGCCCATAGATGGACCACCAGAGCTGTTGCGcc    <  1:11257680‑M2/33‑1 (MQ=255)
                                aCCGCCCATAGATGGACCACCAGAGCTGTTGCGcc    >  1:6573189/1‑35 (MQ=255)
                                 cCGCCCATAGATGGACCACCAGAGCTGTTGCGCCt   >  1:6091900‑M2/2‑35 (MQ=255)
                                 cCGCCCATAGATGGACCACCAGAGCTGTTGCGCCt   <  1:2661434‑M2/34‑1 (MQ=255)
                                  cGCCCATAGATGGACCACCAGAGCTGTTGCGCCTg  >  1:3134739/1‑35 (MQ=255)
                                  cGCCCATAGATGGACCACCAGAGCTGTTGCGCCTg  >  1:2794649/1‑35 (MQ=255)
                                  cGCCCATAGATGGACCACCAGAGCTGTTGCGCCTg  <  1:2144712/35‑1 (MQ=255)
                                  cGCCCATAGATGGACCACCAGAGCTGTTGCGCCTg  <  1:13262198/35‑1 (MQ=255)
                                  |                                  
CCGCCTTTACCGCTTGGCAGGCGAAAACCGGGACCGCCCATAGATGGACCACCAGAGCTGTTGCGCCTG  >  REL606/2517456‑2517524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.