New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 640115 =106 (1.030)28 (0.380) 5/34 NT 24.6% intergenic (+33/+22) cspE/ccrB cold shock protein E/camphor resistance protein CrcB
?REL606 2746531 = 97 (1.330)coding (671/873 nt) hypB GTP hydrolase involved in nickel liganding into hydrogenases

Only 100 of 141 total aligned reads displayed.

GGCCTCAACCGCACACTAAAGACCAAAAAAAAACCCGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/640155‑640115
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctgaAATATCCGCATATGTTTGCCGCCGCCTCGCTGAT  >  REL606/2746531‑2746564
                                                                           
GGCCTCAACCGCACACTAAAGACCAAAAAAAAACC                                          <  1:5928910/35‑1
GGCCTCAACCGCACACTAAAGACCAAAAAAAAACC                                          <  1:8068183/35‑1
GGCCTCAACCGCACACTAAAGACCAAAAAAAAACC                                          <  1:8801774/35‑1
GGCCTCAACCGCACACTAAAGACCAAAAAAAAACC                                          <  1:12716487/35‑1
 GCCTCAACCGCACACTAAAGACCAAAAAAAAACCC                                         <  1:12166108/35‑1
 GCCTCAACCGCACACTAAAGACCAAAAAAAAACCC                                         <  1:18977278/35‑1
 GCCTCAACCGCACACTAAAGACCAAAAAAAAACCC                                         <  1:18789380/35‑1
 GCCTCAACCGCACACTAAAGACCAAAAAAAAACCC                                         >  1:18597881/1‑35
 GCCTCAACCGCACACTAAAGACCAAAAAAAAACCC                                         >  1:18015238/1‑35
  CCTCAACCGCACACTAAAGACCAAAAAAAAACCCG                                        >  1:11861123/1‑35
  CCTCAACCGCACACTAAAGACCAAAAAAAAACCCG                                        <  1:11500702/35‑1
  CCTCAACCGCACACTAAAGACCAAAAAAAAACCCG                                        <  1:8181045/35‑1
  CCTCAACCGCACACTAAAGACCAAAAAAAAACCCG                                        <  1:9837443/35‑1
  CCTCAACCGCACACTAAAGACCAAAAAAAAACCCG                                        <  1:1596340/35‑1
  CCTCAACCGCACACTAAAGACCAAAAAAAAACCCG                                        <  1:2006220/35‑1
    TCAACCGCACACTAAAGACCAAAAAAAAACCCGCT                                      >  1:681934/1‑35
    TCAACCGCACACTAAAGACCAAAAAAAAACCCGCT                                      <  1:6472917/35‑1
    TCAACCGCACACTAAAGACCAAAAAAAAACCCGCT                                      >  1:6365103/1‑35
    TCAACCGCACACTAAAGACCAAAAAAAAACACGCT                                      <  1:3593459/35‑1
     CAACCGCACACTAAAGACCAAAAAAAAACCCGCTG                                     >  1:19800603/1‑35
     CAACCGCACACTAAAGACCAAAAAAAAACCCGCTG                                     >  1:518581/1‑35
     CAACCGCACACTAAAGACCAAAAAAAAACCCGCTG                                     <  1:6957270/35‑1
     CAACCGCACACTAAAGACCAAAAAAAAACCCGCTG                                     <  1:8974168/35‑1
     CAACCGCACACTAAAGACCAAAAAAAAACCCGCTG                                     >  1:9915041/1‑35
      AACCGCACGCTAAAGACCAAAAAAAAACCCGCTGA                                    <  1:4985725/35‑1
      AACCGCACACTAAAGACCAAAAAAAAACCCGCTGA                                    <  1:18801464/35‑1
      AACCGCACACTAAAGACCAAAAAAAAACCCGCTGA                                    <  1:16671636/35‑1
      AACCGCACACTAAAGACCAAAAAAAAACCCGCTGA                                    >  1:17518592/1‑35
                      ggAAAAAAAAACCCGCTGAAATATCCGCATATGTT                    <  1:16074179/33‑1
                      gatAAAAAAAACCCGCTGAAATATCCGCATATGTT                    <  1:15676456/32‑1
                        tAAAAAAAACCCGCTGAAATATCCGCATATGTTTG                  <  1:9115174/34‑1
                        gAAAAAAAACCCGCTGAAATATCCGCATATGTTTG                  <  1:15748421/34‑1
                        AAAAGAAAACCCGCTGAAATATCCGCATATGTTTG                  <  1:923192/35‑1
                        AAAAAAAAACCCGCTGAAATATCCGCATATGTTTG                  <  1:8477470/35‑1
                         AAAGAAAACCCGCTGAAATATCCGCATATGTTTGC                 <  1:10124959/35‑1
                         AAAAAAAACCCGCTGAAATATCCGCATATGTTTGC                 <  1:5658159/35‑1
                         AAAAAAAAACCGCTGAAATATCCGCATATGTTTGC                 <  1:1211896/35‑1
                          AAAAAAACCCGCTGAAATATCCGCATATGTTTGCC                <  1:5565390/35‑1
                          AAAAAAACCCGCTGAAATATCCGCATATGTTTGCC                <  1:12025664/35‑1
                          AAAAAAACCCGCTGAAATATCCGCATATGTTTGCC                <  1:2040775/35‑1
                           AAAAAACCCGCTGAAATATCCGCATATGTTTGCCG               <  1:10609030/35‑1
                           AAAAAACCCGCTGAAATATCCGCATATGTTTGCCG               <  1:20088637/35‑1
                            AAAAACCCGCTGAAATATCCGCATATGTTTGCCGC              <  1:14588622/35‑1
                            AAAAACCCGCTGAAATATCCGCATATGTTTGCCGC              <  1:4296574/35‑1
                            AAAAACCCGCTGAAATATCCGCATATGTTTGCCGC              <  1:16216074/35‑1
                            AAAAAACCGCTGAAATATCCGCATATGTTTGCCGC              <  1:20322690/35‑1
                             AAAACCCGCTAAAATATCCGCATATGTTTGCCGCC             <  1:17338986/35‑1
                                 CCCGCTGAAATATCCGCATATGTTTGCCGCCGCCT         <  1:13043662/35‑1
                                 CCCGCTGAAATATCCGCATATGTTTGCCGCCGCCT         <  1:12717486/35‑1
                                 CCCGCTGAAATATCCGCATATGTTTGCCGCCGCCT         <  1:1508468/35‑1
                                  CCGTTGAAATATCCGCATATGTTTGCCGCCGCCTC        <  1:14931991/35‑1
                                  CCGCTGAAATATCCGCATATGTTTGCCGCCGCCTC        >  1:5156752/1‑35
                                  CCGCTGAAATATCCGCATATGTTTGCCGCCGCCTC        <  1:4089930/35‑1
                                  CCGCTGAAATATCCGCATATGTTTGCCGCCGCCTC        >  1:17040267/1‑35
                                   CGCTGAAATATCCGCATATGTTTGCCGCCGCCTCG       >  1:16343230/1‑35
                                   CGCTGAAATATCCGCATATGTTTGCCGCCGCCTCG       >  1:14003968/1‑35
                                   CGCTGAAATATCCGCATATGTTTGCCGCCGCCTCG       >  1:7177549/1‑35
                                   CGCTGAAATATCCGCATATGTTTGCCGCCGCCTCG       >  1:3225589/1‑35
                                   CGCTAAAATATCCGCATATGTTTGCCGCCGCCTCG       <  1:5835279/35‑1
                                   CGCTAAAATATCCGCATATGTTTGCCGCCGCCTCG       >  1:20160988/1‑35
                                    GCTGATATATCCGCATATGTTTGCCGCCGCCTCGC      >  1:1392522/1‑35
                                    GCTGAAATATCCGCATATGTTTGCCGCCGCCTCGC      >  1:1992585/1‑35
                                    GCTGAAATATCCGCATATGTTTGCCGCCGCCTCGC      <  1:3896212/35‑1
                                    GCTGAAATATCCGCATATGTTTGCCGCCGCCTCGC      >  1:2918394/1‑35
                                    GCTGAAATATCCGCATATGTTTGCCGCCGCCTCGC      >  1:20584333/1‑35
                                    GCTGAAATATCCGCATATGTTTGCCGCCGCCTCGC      >  1:18837714/1‑35
                                     ctaAAATATCCGCATATGTTTGCCGCCGCCTCGCT     <  1:16449326/32‑1
                                     CTGAAATATCCGCATATGTTTGCCGCCGCCTCGCT     >  1:19874877/1‑35
                                     CTGAAATATCCGCATATGTTTGCCGCCGCCTCGCT     <  1:17586402/35‑1
                                     CTGAAATATCCGCATATGTTTGCCGCCGCCTCGCT     >  1:8692796/1‑35
                                      taAAATATCCGCATATGTTTGCCGCCGCCTCGCTG    <  1:4246639/33‑1
                                      gaAAATATCCGCATATGTTTGCCGCCGCCTCGCTG    <  1:13323487/33‑1
                                      TGAATTATCCGCATATGTTTGCCGCCGCCTCGCTG    <  1:6942165/35‑1
                                      TGAAATATCCGCATATGTTTGGCGCCGCCTCGCTG    >  1:6603027/1‑35
                                      TGAAATATCCGCATATGTTTGCCGCCGCCTCGCTG    >  1:4354737/1‑35
                                      TGAAATATCCGCATATGTTTGCCGCCGCCTCGCTG    >  1:13972445/1‑35
                                      TGAAATATCCGCATATGTTTGCCGCCGCCTCGCTG    <  1:6436837/35‑1
                                      TGAAATATCCGCATATGTTTGCCGCCGCCTCGCTG    >  1:13635006/1‑35
                                      TGAAATATCCGCATATGTTTGCCGCCGCCTCGCTG    >  1:13581892/1‑35
                                      TGAAATATCCGCATATGTTTGCCGCCGCCTCGCTG    >  1:7138718/1‑35
                                      TGAAATATCCGCATATGTTTGCCGCCGCCTCGCTG    >  1:4141922/1‑35
                                      TGAAATATCCGCATATGTTTGCCGCCGCCTCGCTG    >  1:19819794/1‑35
                                      TGAAATATCCGCATATGTTTGCCGCCGCCTCGCTG    <  1:3704577/35‑1
                                      TGAAATATCCGCATATGTTTGCCGCCGCCTCCCTG    >  1:19776058/1‑35
                                       aAAATATCCGCATATGTTTGCCGCCGCCTCGCTGA   <  1:5423459/34‑1
                                       aAAATATCCGCATATGTTTGCAGCCGCCTCGCTGA   <  1:11126324/34‑1
                                       aAAATACCCGCATATGTTTGCCGCCGCCTCGCTGA   <  1:84256/34‑1
                                       GAAATATCCGCATATGTTTGCCGCCGCCTCGCTGA   >  1:9467842/1‑35
                                       GAAATATCCGCATATGTTTGCCGCCGCCTCGCTGA   >  1:7358147/1‑35
                                       GAAATATCCGCATATGTTTGCCGCCGCCTCGCTGA   >  1:14661672/1‑35
                                       GAAATATCCGCATATGTTTGCCGCCGCCTCGCTGA   >  1:4506377/1‑35
                                       GAAATATCCGCATATGTTTGCCGCCGCCTCGCTGA   >  1:16730929/1‑35
                                       GAAATATCCGCATATGTTTGCCGCCGCCTCGCTGA   >  1:16910309/1‑35
                                       GAAATATCCGCATATGTTTGCCGCCGCCTCGCTGA   >  1:17395814/1‑35
                                        AAATATCCGCATATGTTTGCCGCCGCCTCGCTGAT  >  1:13047306/1‑35
                                        AAATATCCGCATATGTTTGCCGCCGCCTCGCTGAT  >  1:7913559/1‑35
                                        AAATATCCGCATATGTTTGCCGCCGCCTCGCTGAT  <  1:4807778/35‑1
                                        AAATATCCGCATATGTTTGCCGCCGCCTCGCTGAT  <  1:3808837/35‑1
                                        AAATATCCGCATATGTTTGCCGCCGCCTCGCTGAT  >  1:9608696/1‑35
                                        AAATATCCGCATATGTTTGCCGCCGCCTCGCTGAT  >  1:18105474/1‑35
                                                                           
GGCCTCAACCGCACACTAAAGACCAAAAAAAAACCCGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/640155‑640115
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctgaAATATCCGCATATGTTTGCCGCCGCCTCGCTGAT  >  REL606/2746531‑2746564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.