New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 610886 = | 57 (0.550) | 19 (0.260) | 4/34 | NT | 28.5% | coding (485/858 nt) | entB | isochorismatase |
? | REL606 | 1306336 = | 55 (0.760) | intergenic (‑97/+274) | cls/kch | cardiolipin synthetase/voltage‑gated potassium channel |
Only 100 of 150 total aligned reads displayed.
GTATATGCCCACATTGGTTGTATGACCACCGCAACCGACGCATTTATGCGCGATATTAAACCGTTTATG > REL606/610852‑610920 | gTATATGCCCACATTGGTTGGATGACCACCGCCAc > 1:17156221/1‑35 (MQ=37) atgcaataacagaatggtcattatacccccgcccc > 1:9402648‑M1/35‑35 (MQ=255) atgcaataacagaatggtcattatacccccgcccc > 1:6451332‑M1/35‑35 (MQ=255) tgcaataacagaatggtcattatacccccgccccc > 1:15739156‑M1/34‑35 (MQ=255) tgcaataacagaatggtcattatacccccgccccc < 1:51545‑M1/2‑1 (MQ=255) tgcaataacagaatggtcattatacccccgccccc < 1:8807097‑M1/2‑1 (MQ=255) tataTGCCCACATTGGTTGTATGACCACCGCAAcc > 1:18895658/1‑35 (MQ=255) tataTGCCCACATTGGTTGTATGACCACCGCAAcc > 1:9144224/1‑35 (MQ=255) ggcaataacagaatggtcattatacccccgccccc > 1:20087150‑M1/34‑35 (MQ=255) gcaataacagaatggtcattatacccccgcccccg < 1:17283776‑M1/3‑1 (MQ=255) gcaataacagaatggtcattatacccccgcccccg < 1:13019764‑M1/3‑1 (MQ=255) gcaataacagaatggtcattatacccccgcccccg < 1:12757251‑M1/3‑1 (MQ=255) atatGCCCACATTGGTTGTATGACCACCGCAACCg > 1:16434145/1‑35 (MQ=255) atatGCCCACATTGGTTGGATGGCCACCGCAACCg > 1:3896253/1‑35 (MQ=38) tatGCCCACATTGGTTGTATGACCACCGCAACCGa > 1:17414437/1‑35 (MQ=255) tatGCCCACATTGGTTGGATGACCACCGCAACCGa > 1:6070424/1‑35 (MQ=255) caataacagaatggtcattatacccccgcccCCGa < 1:8047265‑M1/4‑1 (MQ=255) caataacagaatggtcattatacccccgcccCCGa < 1:6028338‑M1/4‑1 (MQ=255) caataacagaatggtcattatacccccgcccCCGa < 1:6182135‑M1/4‑1 (MQ=255) caataacagaatggtcattatacccacgcccCCGa > 1:9292607‑M1/32‑35 (MQ=255) atGCCCACATTGGTTGGATGACCACCGCAACCggc > 1:899365/1‑33 (MQ=38) aataacagaattgtcattatacccccgcccCCGAc < 1:2386677‑M1/5‑1 (MQ=255) aataacagaatggtcattatacccccgcccCCGAc < 1:13111540‑M1/5‑1 (MQ=255) aataacagaatggtcattatacccccgcccCCGAc < 1:8926571‑M1/5‑1 (MQ=255) aataacagaatggtcattatacccccgcccCCGAc < 1:6816632‑M1/5‑1 (MQ=255) ataacagaatggtcattatccccccgcccCCGACg > 1:8628107‑M1/30‑35 (MQ=255) taacagaatggtcattatacccccgcccCCGACGc < 1:11441430‑M1/7‑1 (MQ=255) taacagaatggtcattatacccccgcccCCGACGc < 1:18655143‑M1/7‑1 (MQ=255) taacagaatggtcattatacccccgcccCCGACGc > 1:13582595‑M1/29‑35 (MQ=255) taacagaatggtcattatacccccgcccCCGACGc < 1:13663117‑M1/7‑1 (MQ=255) cccACATTGGTTGGATGACCACCGCAACCGACGCa > 1:3217454/1‑35 (MQ=255) ccACATTGGTTGTATGACCACCGCAACCGACGcct > 1:6928899/1‑33 (MQ=255) ccACATTGGTTGTATGACCACCGCAACCGACGCac > 1:96082/1‑34 (MQ=255) ttGGTTGTATGACCACCGCAACCGACGCATTTATg > 1:4792629/1‑35 (MQ=255) ttGGTTGTATGACCACCGCAACCGACGCATTTATg > 1:5566011/1‑35 (MQ=255) ttGGTTGTATGACCACCGCAACCGACGCATTTATg > 1:19453471/1‑35 (MQ=255) tGGTTGTATGACCACCGCAACCGACGCATTTATgc > 1:13535437/1‑35 (MQ=255) tGGTTGTATGACCACCGCAACCGACGCATTTATgc > 1:16660967/1‑35 (MQ=255) gTTGTATGACCACCGCAACCGACGCATTTATgcgc > 1:20341560/1‑35 (MQ=255) ttGTATGACCACCGCAACCGACGCATTTATGcgcg > 1:4120182/1‑35 (MQ=255) ttGTATGACCACCGCAACCGACGCATTTATGcgcg > 1:3184202/1‑35 (MQ=255) ttGTATGACCACCGCAACCGACGCATTTATGcgcg > 1:4942459/1‑35 (MQ=255) tGTATGACCACCGCAACCGACGCATTTATGCGCGa > 1:16346666/1‑35 (MQ=255) tGTATGACCACCGCAACCGACGCATTTATGCGCGa > 1:16893722/1‑35 (MQ=255) gTATGACCACCGCAACCGACGCATTTATGCGCTat > 1:11003967/1‑35 (MQ=255) gTATGACCACCGCAACCGACGCATTTATGCGCGat > 1:15430886/1‑35 (MQ=255) gTATGACCACCGCAACCGACGCATTTATGCGCGat > 1:10353416/1‑35 (MQ=255) gTATGACCACCGCAACCGACGCATTTATGCGCGat > 1:11371609/1‑35 (MQ=255) gTATGACCACCGCAACCGACGCATTTATGCGCGat > 1:1129587/1‑35 (MQ=255) gTATGACCACCGCAACCGACGCATTTATGCGCGat > 1:10513194/1‑35 (MQ=255) tATGACCACCGCAACCGACGCATTTATGCGCGata > 1:10626386/1‑35 (MQ=255) tATGACCACCGCAACCGACGCATTTATGCGCGata > 1:2110247/1‑35 (MQ=255) tATGACCACCGCAACCGACGCATTTATGCGCGata > 1:784987/1‑35 (MQ=255) tATGACCACCGCAACCGACGCATTTATGCGCGata > 1:5985169/1‑35 (MQ=255) aTGACCACCGCAACCGACGCATTTATGCGCGatat > 1:1537510/1‑35 (MQ=255) tGACCACCGCAACCGACGCATTTATGCGCGATAtt > 1:13095896/1‑35 (MQ=255) tGACCACCGCAACCGACGCATTTATGCGCGATAtt > 1:12823049/1‑35 (MQ=255) gACCACCGCAACCGACGCATTTATGCGCGATATTa > 1:4948278/1‑35 (MQ=255) ccccccccccCCGACGCATTTATGCGCGATATTaa > 1:8087375‑M1/11‑35 (MQ=255) accaccGCAACCGACGCATTTATGCGCGATATTaa > 1:17160682/1‑35 (MQ=255) cccccccccCCGACGCATTTATGCGCGATATTaaa > 1:10998283‑M1/10‑35 (MQ=255) cccccccccCCGACGCATTTATGCGCGATATTaaa > 1:2256202‑M1/10‑35 (MQ=255) cccccccccCCGACGCATTTATGCGCGATATTaaa > 1:12067980‑M1/10‑35 (MQ=255) cccccccccCCGACGCATTTATGCGCGATATTaaa > 1:1225908‑M1/10‑35 (MQ=255) cccccccccCCGACGCATTTATGCGCGATATTaaa > 1:12267700‑M1/10‑35 (MQ=255) ccccccccCCGACGCATTTATGCGCGATATTAAAc > 1:10177065‑M1/9‑35 (MQ=255) caccGCAACCGACGCATTTATGCGCGATATTAAAc > 1:5718359/1‑35 (MQ=255) cccgcccCCGACGCATTTATGCGCGATATTAAAcc > 1:5368361‑M1/8‑35 (MQ=255) cccccccCCGACGCATTTATGCGCGATATTAAAcc > 1:18222684‑M1/8‑35 (MQ=255) cccccccCCGACGCATTTATGCGCGATATTAAAcc > 1:14125139‑M1/8‑35 (MQ=255) cccccccCCGACGCATTTATGCGCGATATTAAAcc > 1:5156231‑M1/8‑35 (MQ=255) accGCAACCGACGCATTTATGCGCGATATTAAAcc > 1:13042694/1‑35 (MQ=255) accGCAACCGACGCATTTATGCGCGATATTAAAcc > 1:2437003/1‑35 (MQ=255) cgccccCCGACGCATTTATGCGCGATATTAAACCg > 1:1592207‑M1/7‑35 (MQ=255) ccccccCCGACGCATTTATGCGCGATATTAAACCg > 1:564741‑M1/7‑35 (MQ=255) ccccccCCGACGCATTTATGCGCGATATTAAACCg > 1:12070471‑M1/7‑35 (MQ=255) ccGCAACCGACGCATTTATGCGCGATATTAAACCg > 1:17832128/1‑35 (MQ=255) ccGCAACCGACGCATTTATGCGCGATATTAAACCg > 1:18212111/1‑35 (MQ=255) ngCAACCGACGCATTTATGCGCGATATTAAACCGt > 1:5964996/2‑35 (MQ=255) cccccCCGACGCATTTATGCGCGATATTAAACCGt > 1:2395777‑M1/6‑35 (MQ=255) cGCAACCGACGCATTTATGCGCGATATTAAACCGt > 1:3460400/1‑35 (MQ=255) cGCAACCGACGCATTTATGCGCGATATTAAACCGt > 1:7344879/1‑35 (MQ=255) ccccCCGACGCATTTATGCGCGATATTAAACCGtt > 1:3342856‑M1/5‑35 (MQ=255) ccccCCGACGCATTTATGCGCGATATTAAACCGtt > 1:5961157‑M1/5‑35 (MQ=255) ccccCCGACGCATTTATGCGCGATATTAAACCGtt > 1:14816966‑M1/5‑35 (MQ=255) cccCCGACGCATTTATGCGCGATATTAAACCGttt > 1:16916912‑M1/4‑35 (MQ=255) cccCCGACGCATTTATGCGCGATATTAAACCGttt > 1:14924612‑M1/4‑35 (MQ=255) cAACCGACGCATTTATGCGCGATATTAAACCGttt > 1:6694208/1‑35 (MQ=255) cAACCGACGCATTTATGCGCGATATTAAACCGttt > 1:20205086/1‑35 (MQ=255) cAACCGACGCATTTATGCGCGATATTAAACCGttt > 1:1589413/1‑35 (MQ=255) cgCCGACGCATTTATGCGCGATATTAAACCGTTTa > 1:15723336‑M1/3‑35 (MQ=255) ccCCGACGCATTTATGCGCGATATTAAACCGTTTa > 1:4026768‑M1/3‑35 (MQ=255) acCCGACGAATTTATGCGCGATATTAAACCGTTTa > 1:16622759‑M1/3‑35 (MQ=255) aaCCGACGCATTTATGCGCGATATTAAACCGTTTa > 1:20001882/1‑35 (MQ=255) aaCCGACGCATTTATGCGCGATATTAAACCGTTTa > 1:2429411/1‑35 (MQ=255) aCCGACGCATTTATGCGCGATATTAAACCGTTTAt > 1:9313862/1‑35 (MQ=255) CCGACGCATTTATGCGCGATATTAAACCGTTTAtg < 1:8947597‑M1/35‑1 (MQ=255) CCGACGCATTTATGCGCGATATTAAACCGTTTAtg < 1:19614876‑M1/35‑1 (MQ=255) CCGACGCATTTATGCGCGATATTAAACCGTTTAtg > 1:11457015‑M1/1‑35 (MQ=255) CCGACGCATTTATGCGCGATATTAAACCATTTAtg < 1:17920626‑M1/35‑1 (MQ=255) | GTATATGCCCACATTGGTTGTATGACCACCGCAACCGACGCATTTATGCGCGATATTAAACCGTTTATG > REL606/610852‑610920 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |