New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2169426 =52 (0.510)13 (0.160) 6/38 NT 13.2% coding (329/1158 nt) yehY predicted transporter subunit: membrane component of ABC superfamily
?REL606 = 2730083 130 (1.600)coding (2203/2253 nt) hypF carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases

Only 100 of 247 total aligned reads displayed.

TCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGT  >  REL606/2730049‑2730117
                                  |                                  
tCACCCGCTAACCAACGCGCCGCAGCAATAAcccc                                    <  1:11576514/35‑1 (MQ=255)
 cccccgcTAACCAACGCGCCGCAGCAATAACCCCc                                   >  1:10030078‑M2/3‑34 (MQ=255)
  aCCCGCTAACCAACGCGCCGCAGCAATAACCCCct                                  <  1:9640583‑M2/35‑3 (MQ=255)
  aCCCGCTAACCAACGCGCCGCAGCAATAACCCCct                                  >  1:288838‑M2/1‑33 (MQ=255)
  aCCCGCTAACCAACGCGCCGCAGCAATAACCCCct                                  <  1:1486409‑M2/35‑3 (MQ=255)
   cccGCTAACCAACGCGCCGCAGCAATAACCCCctg                                 >  1:4658110‑M2/1‑32 (MQ=255)
   cccGCTAACCAACGCGCCGAAGCAATAACCCCctg                                 >  1:19162950‑M2/1‑32 (MQ=255)
    ccGCTACCCAACGCGCCGCAGCAATAACCCCctgc                                >  1:1958201‑M2/1‑31 (MQ=255)
    ccGCTAACCAACGCGCCGCAGCAATAACCCCctgc                                <  1:6185667‑M2/35‑5 (MQ=255)
    ccGCTAACCAACGCGCCGCAGCAATAACCCCctgc                                <  1:5018383‑M2/35‑5 (MQ=255)
    ccGCTAACCAACGCGCCGCAGCAATAACCCCctgc                                <  1:4242470‑M2/35‑5 (MQ=255)
    acgCTACCCAACGCGCCGCAGCAATAACCCCctgc                                >  1:395554‑M2/2‑31 (MQ=255)
     cGCTAACCAACGCGCCGCAGCAATAACCCCctgcc                               <  1:10681289‑M2/35‑6 (MQ=255)
     cGCTAACCAACGCGCCGCAGCAATAACCCCctgcc                               <  1:1603213‑M2/35‑6 (MQ=255)
     cGCTAACCAACGCGCCGCAGCAATAACACCctgcc                               >  1:12800169‑M2/1‑30 (MQ=255)
      gCTAACCAACGCGCCGCAGCAATAACCCCCTGccc                              <  1:19313744/35‑1 (MQ=255)
      gCTAACCAACGCGCCGCAGCAATAACCCCCTGccc                              >  1:11817158/1‑35 (MQ=255)
      gCTAACCAACGCGCCGCAGCAATAACCCCCTGccc                              >  1:10087165/1‑35 (MQ=255)
       cTAACCAACGCGCCGCAGCAATAACCCCCTGcccc                             <  1:17560163/35‑1 (MQ=255)
       cTAACCAACGCGCCGCAGCAATAACCCCCTGcccc                             >  1:8374852/1‑35 (MQ=255)
       cTAACCAACGCGCCGCAGCAATAACCCCCTGcccc                             >  1:20028662/1‑35 (MQ=255)
       cTAACCAACGCGCCGCAGCAATAACCCCCTGcccc                             >  1:10305964/1‑35 (MQ=255)
        tAACCAACGCGCCGCAGCAATAACCCCCTGCTCCa                            >  1:1763121/1‑35 (MQ=255)
        tAACCAACGCGCCGCAGCAATAACCCCCTGCCCCa                            >  1:7236348/1‑35 (MQ=255)
        tAACCAACGCGCCGCAGCAATAACCCCCTGCCCCa                            <  1:8298275/35‑1 (MQ=255)
         aaCCAACGCGCCGCAGCAATAACCCCCTGCCCCag                           <  1:3089785/35‑1 (MQ=255)
         aaCCAACGCGCCGCAGCAATAACCCCCTGCCCCag                           <  1:18280128/35‑1 (MQ=255)
          aCCAACGCGCCGCAGCAATAACCCCCTGCCCCaga                          >  1:636817/1‑35 (MQ=255)
          aCCAACGCGCCGCAGCAATAACCCCCTGCCCCaga                          <  1:8619807/35‑1 (MQ=255)
           ccAACGCTCCGCAGCAATAACCCCCTGCCCCagag                         >  1:1665942/1‑35 (MQ=255)
           ccAACGCGCCGCAGCAATAACCCCCTGCCCCagag                         <  1:207867/35‑1 (MQ=255)
           ccAACGCGCCGCAGCAATAACCCCCTGCCCCagag                         <  1:14401415/35‑1 (MQ=255)
           ccAACGCGCCGCAGCAATAACCCCCTGCCCCagag                         >  1:15926950/1‑35 (MQ=255)
           ccAACGCGCCGCAGCAATAACCCCCTGCCCCagag                         >  1:18112640/1‑35 (MQ=255)
            cAACGCGCCGCAGCAATAACCCCCTGCCCCAgaga                        >  1:7620092/1‑35 (MQ=255)
            cAACGCGCCGCAGCAATAACCCCCTGCCCCAgaga                        <  1:16947681/35‑1 (MQ=255)
            cAACGCGCCGCAGCAATAACCCCCTGCCCCAgaga                        >  1:3207889/1‑35 (MQ=255)
             aaCGCGCCGCAGCAATAACCCCCTGCCCCAGAGAc                       <  1:6081869/35‑1 (MQ=255)
             aaCGCGCCGCAGCAATAACCCCCTGCCCCAGAGAc                       >  1:13773700/1‑35 (MQ=255)
             aaCGCGCCGCAGCAATAACCCCCTGCCCCAGAGAc                       <  1:6930291/35‑1 (MQ=255)
             aaCGCGCCGCAGCAATAACCCCCTGCCCAAGAGAc                       >  1:669472/1‑35 (MQ=255)
              aCGCGCCGCAGCAATACCCCCCTGCCCCAGAGACa                      <  1:11607052/35‑1 (MQ=255)
              aCGCGCCGCAGCAATAACCCCCTGCCCCAGAGACa                      >  1:17767205/1‑35 (MQ=255)
              aCGCGCCGCAGCAATAACCCCCTGCCCCAGAGACa                      <  1:16269427/35‑1 (MQ=255)
              aCGCGCCGCAGCAATAACCCCCTGCCCCAGAGACa                      >  1:8723473/1‑35 (MQ=255)
              aCGCGCCGCAGCAATAACCCCCTGCCCCAGAGACa                      >  1:2363315/1‑35 (MQ=255)
               cgcgCCGCAGCAATAACCCCCTGCGCCAGAGACaa                     <  1:1973801/35‑1 (MQ=255)
               cgcgCCGCAGCAATAACCCCCTGCCCCAGAGACaa                     >  1:6764020/1‑35 (MQ=255)
               cgcgCCGCAGCAATAACCCCCTGCCCCAGAGACaa                     <  1:4534801/35‑1 (MQ=255)
               cgcgCCGCAGCAATAACCCCCTGCCCCAGAGACaa                     >  1:15080639/1‑35 (MQ=255)
               cgcgCCGCAGCAATAACCCCCTGCCCCAGAGACaa                     <  1:10844605/35‑1 (MQ=255)
                gcgcCGCAGCAATAACCCCCTGCCCCAGAGACaaa                    >  1:16357454/1‑35 (MQ=255)
                gcgcCGCAGCAATAACCCCCTGCCCCAGAGACaaa                    >  1:10517460/1‑35 (MQ=255)
                gcgcCGCAGCAATAACCCCCTGCCCCAGAGACaaa                    >  1:10545201/1‑35 (MQ=255)
                gcgcCGCAGCAATAACCCCCTGCCCCAGAGACaaa                    >  1:2450378/1‑35 (MQ=255)
                gccccgcAGCAATAACCCCCTGCCCCAGAGACaaa                    <  1:13472426/32‑1 (MQ=255)
                 cgccgcAGCAATAACCCCCTGCCCCAGAGACAAAc                   <  1:9900617/35‑1 (MQ=255)
                 cgccgcAGCAATAACCCCCTGCCCCAGAGACAAAc                   >  1:12447985/1‑35 (MQ=255)
                 cgccgcAGCAATAACCCCCTGCCCCAGAGACAAAc                   >  1:14193389/1‑35 (MQ=255)
                  gccgcAGCAATAACCCCCTGCCCCAGAGACAAAcc                  <  1:11872061/35‑1 (MQ=255)
                  gccgcAGCAATAACCCCCTGCCCCAGAGACAAAcc                  >  1:2409214/1‑35 (MQ=255)
                  gccgcAGCAATAACCCCCTGCCCCAGAGACAAAcc                  <  1:2872772/35‑1 (MQ=255)
                  gccgcAGCAATAACCCCCTGCCCCAGAGACAAAcc                  >  1:3616581/1‑35 (MQ=255)
                  gccgcAGCAATAACCCCCTGCCCCAGAGACAAAcc                  >  1:5969157/1‑35 (MQ=255)
                  gccgcAGCAATAACCCCCTGCCCCAGAGACAAAcc                  >  1:10408220/1‑35 (MQ=255)
                   ccgcAGCAATACCCCCCTGCCCCAGAGACAAACCg                 <  1:4855081/35‑1 (MQ=255)
                   ccgcAGCAATAACCCCCTGCCCCAGAGACAAACCg                 >  1:20428044/1‑35 (MQ=255)
                   ccgcAGCAATAACCCCCTGCCCCAGAGACAAACCg                 >  1:14993804/1‑35 (MQ=255)
                   ccgcAGCAATAACCCCCTGCCCCAGAGACAAACCg                 <  1:5995961/35‑1 (MQ=255)
                    cgcAGCAATAACCCCCTGCCCCAGAGACAAACCGc                <  1:976360/35‑1 (MQ=255)
                    cgcAGCAATAACCCCCTGCCCCAGAGACAAACCGc                >  1:132037/1‑35 (MQ=255)
                    cgcAGCAATAACCCCCTGCCCCAGAGACAAACCGc                >  1:19486744/1‑35 (MQ=255)
                    cgcAGCAATAACCCCCTGCCCCAGAGACAAACCGc                >  1:1330675/1‑35 (MQ=255)
                    cgcAGCAATAACCCCCTGCCCCAGAGACAAACCGc                >  1:13568769/1‑35 (MQ=255)
                     gcagcaATAACCCCCTGCCCCAGAGACAAACCGcc               >  1:12961292/1‑35 (MQ=255)
                     ccagcaaAAACCCCctgccgaggctggtacgcgcc               >  1:18836726‑M2/2‑14 (MQ=255)
                      cagcaATAACCCCCTGCCCCAGAGACAAACCGCCa              >  1:19003243/1‑35 (MQ=255)
                      cagcaATAACCCCCTGCCCCAGAGACAAACCGCCa              >  1:19363090/1‑35 (MQ=255)
                      cagcaATAACCCCCTGCCCCAGAGACAAACCGCCa              >  1:6353198/1‑35 (MQ=255)
                      cagcaATAACCCCCTGCCCCAGAGACAAACCGCCa              >  1:15560223/1‑35 (MQ=255)
                       agcaATAACCCCCTGCCCCAGAGACAAACCGCCAt             >  1:15462124/1‑35 (MQ=255)
                       agcaAAAACCCCctgccgaggctggtacgcgccag             >  1:774022‑M2/1‑12 (MQ=255)
                        gcaATAACCCCCTGCCCCAGAGACAAACCGCCATc            >  1:5280635/1‑35 (MQ=255)
                         caATAACCCCCTGCCCCAGAGACAAACCGCCATCa           >  1:5480285/1‑35 (MQ=255)
                         caATAACCCCCTGCCCCAGAGACAAACCGCCATCa           >  1:2177696/1‑35 (MQ=255)
                         caATAACCCCCTGCCCCAGAGACAAACCGCCATCa           >  1:18643575/1‑35 (MQ=255)
                          aaTAACCCCCTGCCCCAGAGACAAACCGCCATCAc          >  1:4271602/1‑35 (MQ=255)
                          aaTAACCCCCTGCCCCAGAGACAAACCGCCATCAc          >  1:9055270/1‑35 (MQ=255)
                          aaAAACCCCctgccgaggctggtacgcgccagcgc          >  1:10311820‑M2/1‑9 (MQ=255)
                           aaaaccCCctgccgaggctggtacgcgccagcgca         >  1:12289531‑M2/3‑8 (MQ=255)
                            tAACCCCCTGCCCCAGAGACAAACCGCCATCAccc        >  1:15147358/1‑35 (MQ=255)
                            tAACCCCCTGCCCCAGAGACAAACCGCCATCAccc        >  1:7934387/1‑35 (MQ=255)
                            aaacCCCctgccgaggctggtacgcgccagcgcac        >  1:13515520‑M2/2‑7 (MQ=255)
                             aaCCCCCTGCCCCAGAGACAAACCGCCATCACccg       >  1:11410186/1‑35 (MQ=255)
                             aaCCCCCTGCCCCAGAGACAAACCGCCATCACccg       >  1:15619334/1‑35 (MQ=255)
                              aCCCCctgccgaggctggtacgcgccagcgcactg      >  1:370236‑M2/1‑5 (MQ=255)
                              aCCCCCTGCCCCAGAGACAAACCGCCATCACccgc      >  1:11463481/1‑35 (MQ=255)
                                ccccTGCCCCAGAGACAAACCGCCATCACccgccg    >  1:6573672/1‑35 (MQ=255)
                                 cccTGCCCCAGAGACAAACCGCCATCACCCGCCgg   >  1:7047308/1‑35 (MQ=255)
                                 cccTGCCCCAGAGACAAACCGCCATCACCCGCCgg   >  1:12206386/1‑35 (MQ=255)
                                  |                                  
TCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGT  >  REL606/2730049‑2730117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.