New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1500892 = | NA (NA) | 5 (0.060) | 3/36 | NT | 12.2% | coding (616/4224 nt) | rhsE | rhsE element core protein RshE |
? | REL606 | = 1977657 | 48 (0.470) | coding (181/1005 nt) | yedY | hypothetical protein |
Only 100 of 125 total aligned reads displayed.
GTTTAAAGGGAACGATCGCCCACCCGCCCCCGCCGGAAAACCGCTGGAGTTCAGCAAGCCTGCCGCCTG > REL606/1977623‑1977691 | gTTTAAAGGGAACGATCGCCCACCCGCCCCCGCCG < 1:7733453‑M2/35‑1 (MQ=255) tttAAAGGGAACGATCGCCCACCCGCCCCCGCCgg > 1:4801922/1‑35 (MQ=255) tttAAAGGGAACGATCGCCCACCCGCCCCCGCCgg > 1:188759/1‑35 (MQ=255) cttAAAGGGAACGATCGCCCACCCGCCCCCGCCgg < 1:11127394/34‑1 (MQ=255) tAAAGGGAACGATCGCCCACCCGCCCCCGCCGGaa > 1:19075598/1‑35 (MQ=255) aaaGGGAACGATCGCCCACCCGCCCCCGCCGGaaa > 1:12004081/1‑35 (MQ=255) aaaGGGAACGATCGCCCACCCGCCCCCGCCGCaaa > 1:3679858/1‑35 (MQ=255) aaGGGAACGATCGCCCACCCGCCCCCGCCGGaaaa > 1:11187714/1‑35 (MQ=255) aaGGGAACGATCGCCCACACGCCCCCGCCGGaaaa < 1:10086738/35‑1 (MQ=255) aaCGATCGCCCACCCGCCCCCGCCGGAAAACCGCt > 1:10079637/1‑35 (MQ=255) actaTCGCCCACCCGCCCCCGCCGGAAAACCGCTg > 1:11422756/4‑35 (MQ=255) aCGATCGCCCACCCGCCCCCGCCGGAAAACCGCTg > 1:18255328/1‑35 (MQ=255) cGATCGCCCACCCGCCCCCGCCGGAAAACCGCTgg > 1:8314971/1‑35 (MQ=255) cGATCGCCCACCCGCCCCCGCCGGAAAACCGCTgg > 1:3358538/1‑35 (MQ=255) cGATCGCCCACCCGCCCCCGCCGGAAAACCGCTgg > 1:2196236/1‑35 (MQ=255) cGATCGCCCACCCGCCCCCGCCGGAAAACCGCTgg > 1:1246314/1‑35 (MQ=255) gATCGCCCACCCGCCCCCGCCGGAAAACCGCTGGa > 1:9560520/1‑35 (MQ=255) tcccccCCCCGCCCCCGCCGGAAAACCGCTGGAGt < 1:5005203/32‑1 (MQ=25) tCGCCCACCCGCCCCCGCCGGAAAACCGCTGGAGt > 1:20447359/1‑35 (MQ=255) tCGCCCACCCGCCCCCGCCGGAAAACCGCTGGAGt > 1:2237057/1‑35 (MQ=255) tCGCCCACCCGCCCCCGCCGGAAAACCGCTGGAGt > 1:691137/1‑35 (MQ=255) cccccCCCCGCCCCCGCCGGAAAACCGCTGGAGtt < 1:1147417/33‑1 (MQ=37) cccccCCCCGCCCCCGCCGGAAAACCGCTGGAGtt < 1:17177840/33‑1 (MQ=37) gCCCACCCGCCCCCGCCGGAACACAGCTGGAGTTc > 1:150421/1‑35 (MQ=37) gCCCACCCGCCCCCGCCGGAAAACCGCTTGAGTTc > 1:3998707/1‑35 (MQ=255) gCCCACCCGCCCCCGCCGGAAAACCGCTGGAGTTc > 1:14786719/1‑35 (MQ=255) cccCCCCGCCCCCGCCGtaccgggtgcttaccggg > 1:9839778‑M2/1‑17 (MQ=255) cccCCCCCCCCCCGCCGGAAAACCGCTGGAGTTCa < 1:17928483/35‑1 (MQ=25) cccACCCGCCCCCGCCGGAAAACCGCTGGAGTTCa > 1:13067253/1‑35 (MQ=255) ccACCCGCCCCCGCCGGAAAACCGCTGGAGTTCAg > 1:17592480/1‑35 (MQ=255) ccACCCGCCCCCGCCGGAAAACCGCTGGAGTTCAg > 1:5405177/1‑35 (MQ=255) gccccccccccgccGGTAAGCCGCAGGATTTCAgg < 1:19979009/33‑2 (MQ=21) cccccgcccccgccGGAAAACCGCTGGAGTTCAGc < 1:15622576/33‑1 (MQ=255) cACCCGCCCCCGCCGGAAAACCGCTGGAGTTCAGc > 1:1036984/1‑35 (MQ=255) ccccccccccgccgtaccgggtgcttaccgggctg > 1:17415119‑M2/2‑14 (MQ=255) aCCCGCCCCCGCCGGAAAACCGCTGGAGTTCAGCa > 1:17006453/1‑35 (MQ=255) aCCCGCCCCCGCCGGAAAACCGCTGGAGTTCAGCa > 1:6499680/1‑35 (MQ=255) cccgcccccgccGGAAAACCGCTGGAGTTCAGCaa < 1:20173378/35‑1 (MQ=255) cccgcccccgccGGAAAACCGCTGGAGTTCAGCaa < 1:13093896/35‑1 (MQ=255) ccgcccccgccGGAAAACCGCTGGAGTTCAGCAAg > 1:15517545/1‑35 (MQ=255) ccccccccgccGtaccgggtgcttaccgggctggc > 1:16523565‑M2/1‑12 (MQ=255) ccccccccgccGtaccgggtgcttaccgggctggc > 1:13077526‑M2/1‑12 (MQ=255) cgcccccgccGGAAAACCGCTGGAGTTCAGCAAGc < 1:11706789/35‑1 (MQ=255) ccccccgccgtgccgggtgcttaccgggctggcag > 1:6093629‑M2/2‑10 (MQ=255) ccccccgccgtaccgggtgcttaccgggctggcag > 1:9427694‑M2/2‑10 (MQ=255) ccccccgccgtaccgggtgcttaccgggctggcag > 1:11069850‑M2/2‑10 (MQ=255) ccccccgccGGAAAACCGCTGGAGTTCAGCAAGcc < 1:5384513/34‑1 (MQ=255) cccccgccGtaccgggtgcttaccgggctggcaga > 1:8604085‑M2/1‑9 (MQ=255) cccccgccGtaccgggtgcttaccgggctggcaga > 1:11863092‑M2/1‑9 (MQ=255) cccccgccGGAAAACCGCTGGAGTTCAGCAAGCCt < 1:8899802/35‑1 (MQ=255) cccccgccGGAAAACCGCTGGAGTTCAGCAAGCCt < 1:8878514/35‑1 (MQ=255) ccccgccGGAAAACCGCTGGAGTTCAGCAAGCCTg < 1:20234555/35‑1 (MQ=255) ccccgccGGAAAACCGCTGGAGTTCAGCAAGCCTg > 1:13524584/1‑35 (MQ=255) cccccccGGAAACCCGCTGGAGTTCAGCAAGCCTg < 1:18114222/35‑1 (MQ=37) cccgccGtaccgggtgcttaccgggctggcagacc > 1:811841‑M2/1‑7 (MQ=255) cccgccGtaccgggtgcttaccgggctggcagacc > 1:11486651‑M2/1‑7 (MQ=255) cccgccGtaccgggtgcttaccgggctggcagacc > 1:2302599‑M2/1‑7 (MQ=255) cccgccGtaccgggtgcttaccgggctggcagacc > 1:9127478‑M2/1‑7 (MQ=255) cccgccGtaccgggtgcttaccgggctggcagacc > 1:16134047‑M2/1‑7 (MQ=255) cccgccGtaccgggtgcttaccgggctggcagacc > 1:4603775‑M2/1‑7 (MQ=255) cccgccGGAAAACCGCTGGAGTTCAGCAAGCCTgc > 1:14795048/1‑35 (MQ=255) cccgccGGAAAACCGCTGGAGTTCAGCAAGCCTgc > 1:12518691/1‑35 (MQ=255) cccgccGAAAACCCGCTGGAGTTCAGCAAGCCTgc < 1:9817807/35‑1 (MQ=37) ccgccgtaccgggtgcttaccgggctggccgaccg < 1:16442327‑M2/35‑30 (MQ=255) ccgccgAAAACCCGCTGGAGTTCAGCAAGCCTgcc < 1:7640440/35‑1 (MQ=37) cgccgtaccgggtgcttaccgggctggcagaccgt > 1:20309879‑M2/1‑5 (MQ=255) cgccgtaccgggtgcttaccgggctggcagaccgt < 1:6694488‑M2/35‑31 (MQ=255) gccttaccgggtgcttaccgggctggcagaccgtt > 1:17514070‑M2/1‑4 (MQ=255) gccgtaccgggtgcttaccgggctggcagaccgtt < 1:12658480‑M2/35‑32 (MQ=255) gccgtaccgggtgcttaccgggctggcagaccgtt > 1:7561415‑M2/1‑4 (MQ=255) gccgtaccgggtgcttaccgggctggcagaccgtt < 1:12792917‑M2/35‑32 (MQ=255) gccgtaccgggtgcttaccgggctggcagaccgtt > 1:13047564‑M2/1‑4 (MQ=255) gccgtaccgggtgcttaccgggctggcagaccgtt > 1:13329229‑M2/1‑4 (MQ=255) gccgtaccgggtgcttaccgggctggcagaccgtt < 1:57241‑M2/35‑32 (MQ=255) gccgtaccgggtgcttaccgggctggcagaccgtt > 1:14554192‑M2/1‑4 (MQ=255) gccgtaccgggtgcttaccgggctggcagaccgtt > 1:15397990‑M2/1‑4 (MQ=255) gccgtaccgggtgcttaccgggctggcagaccgtt < 1:16744474‑M2/35‑32 (MQ=255) gccgtaccgggtgcttaccgggctggcagaccgtt > 1:11408079‑M2/1‑4 (MQ=255) gccgGAAAACCGCTGGAGTTCAGCAAGCCTgccgc > 1:17040408/1‑35 (MQ=255) gccgGAAAACCGCTGGAGTTCAGCAAGCCTgccgc > 1:17886113/1‑35 (MQ=255) cccgtaccgggtgcttaccgggctggcagaccgtt > 1:18675272‑M2/2‑4 (MQ=255) ccgtaccgggtgcttaccgggctggcagaccgttt < 1:14083865‑M2/35‑33 (MQ=255) ccgtaccgggtgcttaccgggctggcagaccgttt > 1:9228907‑M2/1‑3 (MQ=255) ccgtaccgggtgcttaccgggctggcagaccgttt < 1:9158137‑M2/35‑33 (MQ=255) cgtaccgggtgcttaccgggctggcagaccgtttc > 1:9479995‑M2/1‑2 (MQ=255) cgtaccgggtgcttaccgggctggcagaccgtttc > 1:848565‑M2/1‑2 (MQ=255) cgtaccgggtgcttaccgggctggcagaccgtttc > 1:9885083‑M2/1‑2 (MQ=255) cgtaccgggtgcttaccgggctggcagaccgtttc < 1:8125076‑M2/35‑34 (MQ=255) cgtaccgggtgcttaccgggctggcagaccgtttc < 1:5595042‑M2/35‑34 (MQ=255) cgtaccgggtgcttaccgggctggcagaccgtttc < 1:17271040‑M2/35‑34 (MQ=255) cgtaccgggtgcttaccgggctggcagaccgcttc < 1:17933636‑M2/35‑34 (MQ=255) cgGAAAACCGCTGGAGTTCAGCAAGCCTGCCGCCt > 1:176339/1‑35 (MQ=255) cgGAAAACCGCTGGAGTTCAGCAAGCCTGCCGCCt > 1:11091837/1‑35 (MQ=255) gtaccgggtgcttaccgggctggcagaccgtttcg < 1:4801756‑M2/35‑35 (MQ=255) gtaccgggtgcttaccgggctggcagaccgtttcg < 1:3487501‑M2/35‑35 (MQ=255) gtaccgggtgcttaccgggctggcagaccgtttcg < 1:14675201‑M2/35‑35 (MQ=255) gtaccgggtgcttaccgggctggcagaccgtttcg < 1:12013986‑M2/35‑35 (MQ=255) gtaccgggtgcttaccgggctggcagaccgtttcg < 1:10089946‑M2/35‑35 (MQ=255) ggAAACCCGCTGGAGTTCAGCAAGCCTGCCGCCTg < 1:7431144/35‑1 (MQ=255) ggAAAACCGCTGGAGTTCAGCAAGCCTGCCGCCTg > 1:15866227/1‑35 (MQ=255) | GTTTAAAGGGAACGATCGCCCACCCGCCCCCGCCGGAAAACCGCTGGAGTTCAGCAAGCCTGCCGCCTG > REL606/1977623‑1977691 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |