New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3190470 =58 (0.560)12 (0.120) 5/46 NT 19.7% coding (511/1269 nt) yhaO predicted transporter
?REL606 4585732 = 42 (0.430)coding (509/1023 nt) yjjN predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding

TTCGACCGGCATGGTGCTGACCAAGCTGCTGGTGG‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3190504‑3190470
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGCGGGGCCA  >  REL606/4585732‑4585742
                                              
TTCGACCGGCATGGTGCTGACCAAGCTGCTGGTGG             >  1:14195444/1‑35
 TCGACCGGCATGGTGCTGACCAAGCTGCTGGTGGG            >  1:6214916/1‑35
 TCGACCGGCATGGTGCTGACCAAGCTGCTGGTGGG            >  1:14047314/1‑35
 TCGACCGGCATGGTGCTGACCAAGCTGCTGGTGGG            >  1:19973809/1‑35
 TCGACCGGCATGGTGCTGACCAAGCTGCTGGGGGG            >  1:19151639/1‑35
  CGACCGGCATGGTGCTGACCAAGCTGCTGGTGGGG           >  1:4776801/1‑35
   GACCGGCATGGTGCTGACCAAGCTGCTGGTGGGcg          >  1:11371999/1‑33
   GACCGGCATGGTGCTGACCAAGCTGCTGGTGGGcg          >  1:5661890/1‑33
   GACCGGCATGGTGCTGACCAAGCTGCTGGTGGGGG          >  1:6974053/1‑35
   GACCGGCATGGTGCTGACCAAGCTGCTGGTGGGGG          >  1:18551789/1‑35
   GACCGGCATGGTGCTGACCAAGCTGCTGGTGGGGG          >  1:19283847/1‑35
    ACCGGCATGGTGCTGACCAAGCTGCTGGTGGGCGC         >  1:10718703/1‑35
    ACCGGCATGGTGCTGACCAAGCTGCTGGTGGGCGC         >  1:15586999/1‑35
     CCGGCATGGTGCTGACCAAGCTGCTGGTGGGGGgg        >  1:8646032/1‑33
     CCGGCATGGTGCTGACCAAGCTGCTGGTGGGGGCG        >  1:19376094/1‑35
     CCGGCATGGTGCTGACCAAGCTGCTGGTGGGCGCG        >  1:19206156/1‑35
     CCGGCATGGTGCTGACCAAGCTGCTGGTGGGCGCG        >  1:9831368/1‑35
      CGGCATGGTGCTGACCAAGCTGCTGGTGGGGCCGN       >  1:20615978/1‑35
      CGGCATGGTGCTGACCAAGCTGCTGGTGGGCGCGG       >  1:3026104/1‑35
       GGCATGGTGCTGACCAAGCTGCTGGTGGGCGCGGG      >  1:14252824/1‑35
        GCATGTTGCTGACCAAGCTGCTGGTGGGGGCGGGG     >  1:13242958/1‑35
        GCATGGTGCTGACCAAGCTGCTGGTGGGGGGGGGG     >  1:15049191/1‑35
        GCATGGTGCTGACCAAGCTGCTGGTGGGGGCGGGG     >  1:1986747/1‑35
         CATGGTGCTGACCAAGCTGCTGGTGGGGGCGGGGC    >  1:5544946/1‑35
         CATGGTGCTGACCAAGCTGCTGGTGGGCGCGGGGC    >  1:2914075/1‑35
          ATGGTGCTGACCAAGCTGCTGGTGGGCGCGGGGCt   >  1:11840951/1‑34
          ATGGTGCTGACCAAGCTGCTGGTGGGCGCGGGGCC   >  1:20287833/1‑35
           TGGTGCTGACCAAGCTGCTGGTGGGGGGGGGGCCg  >  1:13853646/1‑34
           TGGTGCTGACCAAGCTGCTGGTGGGGGCGGGGgcg  >  1:675483/1‑32
                                              
TTCGACCGGCATGGTGCTGACCAAGCTGCTGGTGG‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3190504‑3190470
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGCGGGGCCA  >  REL606/4585732‑4585742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.