New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1199795 =69 (0.670)4 (0.060) 3/30 NT 7.4% coding (20/828 nt) potB spermidine/putrescine ABC transporter membrane protein
?REL606 = 3283512 57 (0.890)intergenic (+39/‑175) ptsO/yrbL phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr)/hypothetical protein

ACACAAGTAAGTTCCAGAATGTAGTGATTGTCACTATTGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1199837‑1199795
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattgtcggGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTGAT  <  REL606/3283512‑3283479
                                                                             
ACACAAGTAAGTTCCAGAATGTAGTGATTGTCACT                                            >  1:4703650/1‑35
ACACAAGTAAGTTCCAGAATGTAGTGATTGTCACT                                            >  1:10089000/1‑35
ACACAAGTAAGTTCCAGAATGTAGTGATTGTCACT                                            <  1:2430722/35‑1
 CACAAGTAAGTTCCAGAATGTAGTGATTGTCACTA                                           <  1:4671978/35‑1
 CACAAGTAAGTTCCAGAATGTAGTGATTGTCACTA                                           <  1:10248512/35‑1
 CACAAGTAAGTTCCAGAATGTAGTGATTGTCACTA                                           <  1:11186482/35‑1
  ACAAGTAAGTTCCAGAATGTAGTGATTGTCACTAT                                          >  1:5546166/1‑35
  ACAAGTAAGTTCCAGAATGTAGTGATTGTCACTAT                                          <  1:14069035/35‑1
  ACAAGTAAGTTCCAGAATGTAGTGATTGTCACTAT                                          <  1:19603567/35‑1
  ACAAGTAAGTTCCAGAATGTAGTGATTGTCACTAT                                          >  1:15743689/1‑35
  ACAAGTAAGTTCCAGAATGTAGTGATTGTCACTAT                                          <  1:18087987/35‑1
   CAAGTAAGTTCCAGAATGTAGTGATTGTCACTATT                                         <  1:13105931/35‑1
   CAAGTAAGTTCCAGAATGTAGTGATTGTCACTATT                                         <  1:14150519/35‑1
   CAAGTAAGTTCCAGAATGTAGTGATTGTCACTATT                                         >  1:5956935/1‑35
    AAGTAAGTTCCAGAATGTAGTGATTGTCACTATTG                                        <  1:8479432/35‑1
    AAGTAAGTTCCAGAATGTAGTGATTGTCACTATTG                                        >  1:19799670/1‑35
    AAGTAAGTTCCAGAATGTAGTGATTGTCACTATTG                                        <  1:2314125/35‑1
     AGTAAGTTCCAGAATGTAGTGATTGTCACTATTtt                                       >  1:13724978/1‑33
     AGTAAGTTCCAGAATGTAGTGATTGTCACTATTGT                                       >  1:6631195/1‑35
     AGTAAGTTCCAGAATGTAGTGATTGTCACTATTGT                                       >  1:15427362/1‑35
     AGTAAGTTCCAGAATGTAGTGATTGTCACTATTGT                                       <  1:15074049/35‑1
     AGTAAGTTCCAGAATGTAGTGATTGTCACTATTGT                                       >  1:9308095/1‑35
     AGTAAGTTCCAGAATGTAGTGATTGTCACTATTGT                                       >  1:9098531/1‑35
      GTAAGTTCCAGAATGTAGTGATTGTCACTATTGTC                                      >  1:11684923/1‑35
      GTAAGTTCCAGAATGTAGTGATTGTCACTATTGTC                                      >  1:7436972/1‑35
       TAAGTTCCAGAATGTAGTGATTGTCACTATTGTCG                                     <  1:3956468/35‑1
       TAAGTTCCAGAATGTAGTGATTGTCACTATTGTCG                                     <  1:20217073/35‑1
       TAAGTTCCAGAATGTAGTGATTGTCACTATTGTCG                                     <  1:19035734/35‑1
       TAAGTTCCAGAATGTAGTGATTGTCACTATTGTCG                                     <  1:7568685/35‑1
       TAAGTTCCAGAATGTAGTGATTGTCACTATTGTCG                                     <  1:17380414/35‑1
       TAAGTTCCAGAATGTAGTGATTGTCACTATTGTCG                                     <  1:8079059/35‑1
       TAAGTTCCAGAATGTAGTGATTGTCACTATTGTCG                                     >  1:16221866/1‑35
       TAAGTTCCAGAATGTAGTGATTGTCACTATTGTCG                                     <  1:1206644/35‑1
       TAAGTTCCAGAATGTAGTGATTGTCACTATTGTCG                                     <  1:15318713/35‑1
       TAAGTTCCAGAATGTAGTGATTGTCACTATTGTCG                                     >  1:13344630/1‑35
       TAAGTTCCAGAATGTAGTGATTGTCACTATTGTCG                                     <  1:12237133/35‑1
        AAGTTCCAGAATGTAGTGATTGTCACTATTGTCGG                                    >  1:12128564/1‑35
        AAGTTCCAGAATGTAGTGATTGTCACTATTGTCGG                                    >  1:2734520/1‑35
        AAGTTCCAGAATGTAGTGATTGTCACTATTGTCGG                                    >  1:1430714/1‑35
        AAGTTCCAGAATGTAGTGATTGTCACTATTGTCGG                                    >  1:11128817/1‑35
         AGTTCCAGAATGTAGTGATTGTCACTATTGTCGGG                                   >  1:3275219/1‑35
          GTTCCAGAATGTAGTGATTGTCCCTATTGTCGGGG                                  >  1:10951581/1‑35
          GTTCCAGAATGTAGTGATTGTCACTATTGTCGGGG                                  >  1:9316594/1‑35
           TTCCAGAATGTAGTGATTGTCACTATTGTCGGGGG                                 >  1:11897271/1‑35
            TCCAGAATGTAGTGATTGTCACTATTGTCGGGGGG                                >  1:4088878/1‑35
            TCCAGAATGTAGTGATTGTCACTATTGTCGGGGGG                                >  1:5797897/1‑35
             CCAGAATGTAGTGATTGTCACTATTGTCGGGGGGg                               >  1:9126804/1‑34
               AGAATGTAGTGATTGTCACTATTGTCGGGGGGggg                             >  1:10082290/1‑32
               AGAATGTAGTGATTGTCACTATTGTCGGGGGGGGT                             >  1:15157728/1‑35
                GAATGTAGTGATTGTCACTATTGTCGGGGGGGGTT                            >  1:786345/1‑35
                 AATGTAGTGATTGTCACTATTGTCGGGGGGGGTTg                           >  1:7447060/1‑34
                  ATGTAGTGATTGTCACTATTGTCGGGGGGGGTTTG                          >  1:1334685/1‑35
                                  TATTGTCGGGGGGAGTTTGAAGGGAGTTGTATGTC          <  1:1154976/35‑1
                                   ATTGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCA         <  1:4501734/35‑1
                                   ATTGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCA         <  1:14040764/35‑1
                                    TTGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAA        <  1:4016460/35‑1
                                    TTGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAA        >  1:14140842/1‑35
                                    TTGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAA        >  1:5887402/1‑35
                                    TTGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAA        <  1:11825015/35‑1
                                    TTGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAA        >  1:9072429/1‑35
                                    TTGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAA        <  1:13099873/35‑1
                                    TTGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAA        <  1:6827372/35‑1
                                    TTGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAA        >  1:18104756/1‑35
                                     TGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAAA       >  1:17103541/1‑35
                                     TGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAAA       >  1:16369798/1‑35
                                     TGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAAA       <  1:3305814/35‑1
                                     TGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAAA       <  1:9748028/35‑1
                                     TGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAAA       >  1:15891616/1‑35
                                     TGTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAAA       <  1:1532071/35‑1
                                      GTCGGGGGGAGTTTGAAGGGAGTTGTATGTCAAAG      <  1:2490102/35‑1
                                      GTCGGGAGGAGTTTGAAGGGAGTTGTATGTCAAAG      <  1:986674/35‑1
                                       TCGGGGGGAGTTTGAAGTGAGTTGTATGTCAAAGT     >  1:17901371/1‑35
                                       TCGGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGT     <  1:20547763/35‑1
                                       TCGGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGT     <  1:8986553/35‑1
                                       TCGGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGT     <  1:6410326/35‑1
                                       TCGGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGT     <  1:18334360/35‑1
                                       TCGGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGT     <  1:17735997/35‑1
                                       TCGGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGT     >  1:17734722/1‑35
                                        CGGGGGGAGTTTGAAGGGAGTTGTATTTCAAAGTG    >  1:10111896/1‑35
                                        CGGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTG    >  1:12869415/1‑35
                                        CGGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTG    <  1:13530109/35‑1
                                        CGGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTG    <  1:16859769/35‑1
                                        CGGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTG    <  1:1723665/35‑1
                                        CGGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTG    <  1:5457204/35‑1
                                         GGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTGA   <  1:18540439/35‑1
                                         GGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTGA   <  1:3670582/35‑1
                                         GGGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTGA   <  1:10316035/35‑1
                                          GGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTGct  >  1:11608897/1‑33
                                          GGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTGAT  <  1:15300364/35‑1
                                          GGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTGAT  <  1:19518365/35‑1
                                          GGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTGAT  >  1:20570389/1‑35
                                          GGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTGAT  <  1:12474052/35‑1
                                          GGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTGAT  >  1:10618766/1‑35
                                                                             
ACACAAGTAAGTTCCAGAATGTAGTGATTGTCACTATTGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1199837‑1199795
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattgtcggGGGGAGTTTGAAGGGAGTTGTATGTCAAAGTGAT  <  REL606/3283512‑3283479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.