New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 581288 = | 99 (0.960) | 12 (0.150) | 3/38 | NT | 17.1% | coding (1672/3144 nt) | cusA | copper/silver efflux system, membrane component |
? | REL606 | 1956195 = | 38 (0.470) | coding (420/579 nt) | flhC | DNA‑binding transcriptional dual regulator with FlhD |
CAAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/581326‑581288 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccGCAGCAGTTGCAGCTGGAAAGTTGCAGTAATCCA > REL606/1956195‑1956228 CAAGTCGCCTTCATTGATCTGCGGTAAAAATTCCC < 1:9344956/35‑1 CAAGTCGCCTTCATTGATCTGCGGTAAAAATTCCC > 1:8813450/1‑35 CAAGTCGCCTTCATTGATCTGCGGTAAAAATTCCC > 1:15138617/1‑35 CAAGTCGCATTCATTGATCTGCGGTAAAAATTCCC < 1:9460740/35‑1 AAGTCGCCTTCATTGATTTGCGGTAAAAATTCCCC > 1:1423798/1‑35 AAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCC > 1:7795791/1‑35 AAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCC < 1:7636275/35‑1 AAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCC > 1:2943919/1‑35 AAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCC < 1:20520015/35‑1 AAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCC < 1:19135314/35‑1 AAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCC > 1:18187393/1‑35 AAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCC < 1:1661/35‑1 AAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCC < 1:1498418/35‑1 AAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCC > 1:14858856/1‑35 AAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCC > 1:14065371/1‑35 AAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCC > 1:13701629/1‑35 AAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCC > 1:11570140/1‑35 AAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCC > 1:11928556/1‑35 AGTCGCCTTCATTGATTTGCGGTAAAAATTCCCCG > 1:1997372/1‑35 AGTCGCCTTCATTGATCTGCTGTAAAAATTCCCCG > 1:10662114/1‑35 AGTCGCCTTCATTGATCTGCGGTAAAAATTCCCCG < 1:15674068/35‑1 AGTCGCCTTCATTGATCTGCGGTAAAAATTCCCCG > 1:20147151/1‑35 AGTCGCCTTCATTGATCTGCGGTAAAAATTCCCCG > 1:8338188/1‑35 AGTCGCCTTCATTGATCTGCGGTAAAAATTCCCCG < 1:17823251/35‑1 AGTCGCCTTCATTGATCTGCGGTAAAAATTCCCCG > 1:12004508/1‑35 GTCGCCTTCATTGATCTGCGGTAAAAATTCCCCGC < 1:13068005/35‑1 TCGCCTTCATTGATCTGCGGTAAAAATTCCCCGCC > 1:2026986/1‑35 TCGCCTTCATTGATCTGCGGTAAAAATTCCCCGCC > 1:1120311/1‑35 TCGCCTTCATTGATCTGCGGTAAAAATTCCCCGCC > 1:17851133/1‑35 TCGCCTTCATTGATATGCGGTAAAAATTCCCCGCC < 1:7701130/35‑1 taaAAAAATTCCCCGCCGCAGCAGTTGCAGCTGGA < 1:1682463/32‑1 aaAAAAATTCCCCGCCGCAGCAGTTGCAGCTGGAA < 1:13300431/33‑1 aAAAAATTCCCCGCCGCAGCAGTTGCAGCTGGAAA < 1:14807839/34‑1 aAAAAAATCCCCGCCGCAGCAGTTGCAGCTGGAAA < 1:14808121/34‑1 AAAAATTCCCCGCCGCAGCAGTTGCAGCTGGAAAG < 1:16950389/35‑1 AAAAATTCCCCGCCGCAGCAGTTGCAGCTGGAAAG < 1:4189421/35‑1 AAAAAGTCCCCGCCGCAGCAGTTGCAGCTGGAAAG < 1:19772725/35‑1 AAAAAGTCCCCGCCGCAGCAGTTGCAGCTGGAAAG < 1:10757383/35‑1 AAAAAATCCCCGCCGCAGCAGTTGCAGCTGGAAAG < 1:20053617/35‑1 AAAAAATCCCCGCCGCAGCAGTTGCAGCTGGAAAG < 1:4444775/35‑1 AAAATTCCCCGCCGCAGCAGTTGCAGCTGGAAAGT < 1:6117308/35‑1 AAATTGCCCGCCGCAGCAGTTGCAGCTGGAAAGTT < 1:1471769/35‑1 aaaTCCCCGCCGCAGCAGTTGCAGCTGGAAAGTTG < 1:16125289/32‑1 ATTCCCCGCCGCAGCAGTTGCAGCTGGAAAGTTGC < 1:5927766/35‑1 tcCCCCGCCGCAGCAGTTGCAGCTGGAAAGTTGCA < 1:2736104/33‑1 tgCCCGCCGCAGCAGTTGCAGCTGGAAAGTTGCAG < 1:19759564/33‑1 gCCCCGCCGCAGCAGTTGCAGCTGGAAAGTTGCAG < 1:1283865/34‑1 TCCCCGCCGCAGCAGTTGCAGCTGGAAAGTTGCAG < 1:7749457/35‑1 TCCCCGCCGCAGCAGTTGCAGCTGGAAAGTTGCAG < 1:10801265/35‑1 TCCCCGCCGCAGCAGTTGCAGCTGGAAAGTTGCAG < 1:13559617/35‑1 CCCCGCCGCAGCAGTTGCAGCTGGAAAGTTGCAGT < 1:11704614/35‑1 CCCCGCCGCAGCAGTTGCAGCTGGAAAGTTGCAGT < 1:1275676/35‑1 CCCGCCGCAGCAGTTGCAGCTGGAAAGTTGCAGTA < 1:3458871/35‑1 CCGCCGCAGCAGTTGCAGCTGGAAAGTTGCAGTAA < 1:4660255/35‑1 CGCCGCAGCAGTTGCAGCTGGAAAGTTGCAGTAAT < 1:6041142/35‑1 CGCCGCAGCAGTTGCAGCTGGAAAGTTGCAGGAAa > 1:6526368/1‑34 GCCGCAGCAGTTGCAGCTGGAAAGTTGCAGTAATC < 1:11826965/35‑1 CCGCAGCAGTTGCAGCTGGAAAGTTGCAGTAATCC < 1:6134207/35‑1 CGCAGCAGTTGCAGCTGGAAAGTTGCAGTAATCCA < 1:3630984/35‑1 CGCAGCAGTTGCAGCTGGAAAGTTGCAGTAATCCA < 1:237603/35‑1 CAAGTCGCCTTCATTGATCTGCGGTAAAAATTCCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/581326‑581288 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccGCAGCAGTTGCAGCTGGAAAGTTGCAGTAATCCA > REL606/1956195‑1956228 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |