New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1673413 | 70 (0.680) | 24 (0.250) | 7/44 | NT | 28.7% | intergenic (‑147/+244) | uidA/uidR | beta‑D‑glucuronidase/DNA‑binding transcriptional repressor |
? | REL606 | = 4601575 | 55 (0.580) | intergenic (+52/‑70) | ytjA/yjjU | hypothetical protein/predicted esterase |
Only 100 of 128 total aligned reads displayed.
AAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTT > REL606/4601541‑4601609 | aaaTTTTATCCAAAGCCAGTCCAGCGGACTGGCtt > 1:17458936/1‑35 (MQ=255) aaaTTTTATCCAAAGCCAGTCCAGCGGACTGGCtt > 1:18838276/1‑35 (MQ=255) aaaTTTTATCCAAAGCCAGTCCAGCGGACTGGCtt < 1:4712022/35‑1 (MQ=255) atttttACCCAAAGCCAGTCCAGCGGACTGGCttt < 1:3883907/33‑1 (MQ=37) aaTTTTATCCAAAGCCAGTCCAGCGGACTGGCTTt < 1:6434995‑M2/35‑2 (MQ=255) aaTTTTATCCAAAGCCAGTCCAGAGGACTGGCTTt > 1:11823070‑M2/1‑34 (MQ=255) gtttaATCAAAAGCCAGTCCAGCGGACTGGCtttt < 1:8714057/34‑1 (MQ=21) aTTTTATCCAAAGCCAGTCCAGCGGACTGGCTTtt > 1:6151916‑M2/1‑33 (MQ=255) aTTTTATCCAAAGCCAGTCCAGCGGACTGGCTTtt < 1:7085985‑M2/35‑3 (MQ=255) aTTTTATCCAAAGCCAGTCCAGCGGACTGGCTTtt > 1:20220957‑M2/1‑33 (MQ=255) aTTTTATCCAAAGCCAGTCCAGCGGACTGGCTTtt < 1:6435527‑M2/35‑3 (MQ=255) aTTTTATCAAAAGCCAGTCCAGCGGACTGGCTTtt > 1:2805806‑M2/1‑33 (MQ=255) ttttATCCAAAGCCAGTCCAGCGGACTGGCTTttt < 1:15850565‑M2/35‑4 (MQ=255) ttttATCCAAAGCCAGTCCAGCGGACTGGCTTttt < 1:17989862‑M2/35‑4 (MQ=255) ttttATCCAAAGCCAGTCCAGCGGACTGGCTTTTg < 1:13687262/35‑1 (MQ=255) tttATCCAAAGCCAGTCCAGCGGACTGGCTTtttt < 1:4602315‑M2/35‑5 (MQ=255) ttATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCg < 1:16685524/35‑1 (MQ=255) ttATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCg < 1:8411317/35‑1 (MQ=255) tATCCAAAGCCAGTCCAGCGGACTGGCTTtttttt < 1:16257160‑M2/35‑7 (MQ=255) tATCCAAAGCCAGTCCAGCGGACTGGCTTtttttg < 1:9332146‑M2/35‑7 (MQ=255) tATCCAAAGCCAGTCCAGCGGACTGGCTTttttct < 1:435387‑M2/35‑7 (MQ=255) tATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCgg < 1:17861493/35‑1 (MQ=255) aTCCAAAGCCAGTCCAGCGGACTGGCTTttttttg < 1:14225253‑M2/35‑8 (MQ=255) aTCCAAAGCCAGTCCAGCGGACTGGCTTttttttg < 1:3278654‑M2/35‑8 (MQ=255) aTCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGt < 1:16202743/35‑1 (MQ=255) tCCAAAGCCAGTCCAGCGGACTGGCTTtttttggt < 1:9772349‑M2/35‑9 (MQ=255) tCCAAAGCCAGTCCAGCGGACTGGCTTttttgggt < 1:11612747‑M2/35‑9 (MQ=255) cccAAAGCCAGTCCAGCGGACTGGCTTTTGCGGtt < 1:5589189/34‑1 (MQ=255) ccAAAGCCAGTCCAGCGGACTGGCTTtttttggtt < 1:13785954‑M2/35‑10 (MQ=255) ccAAAGCCAGTCCAGCGGACTGGCTTtttttggtt < 1:3458783‑M2/35‑10 (MQ=255) cAAAGCCAGTCCAGCGGACTGGCTTtttttgtttt < 1:328481‑M2/35‑11 (MQ=255) cAAAGCCAGTCCAGCGGACTGGCTTttttgggttt < 1:5574627‑M2/35‑11 (MQ=255) cAAAGCCAGTCCAGCGGACTGGCTTTTGCGGtttt < 1:14974250/35‑1 (MQ=255) cAAAGCCAGTCCAGCGGACTGGCTTTTGCGGtttt < 1:18788395/35‑1 (MQ=255) aaaGCCAGTCCAGCGGACTGGCTTtttctggtttt < 1:4367675‑M2/35‑12 (MQ=255) aaaGCCAGTCCAGCGGACTGGCTTTTTTGGttttt > 1:14283964/1‑34 (MQ=25) aaaGCCAGTCCAGCGGACTGGCTTTTTTGGttttt > 1:11265841/1‑34 (MQ=25) aaaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTa < 1:237952/35‑1 (MQ=255) aaaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTa < 1:5453621/35‑1 (MQ=255) aaaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTa < 1:16841351/35‑1 (MQ=255) aaaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTa < 1:7026283/35‑1 (MQ=255) aaGCCAGTCCAGCGGACTGGCTTtttttgtttttt < 1:19387833‑M2/35‑13 (MQ=255) aaGCCAGTCCAGCGGACTGGCTTtttttggttttt < 1:11899091‑M2/35‑13 (MQ=255) aaGCCAGTCCAGCGGACTGGCTTtttttggttttt < 1:12163945‑M2/35‑13 (MQ=255) aaGCCAGTCCAGCGGACTGGCTTtttttggttttt < 1:15705529‑M2/35‑13 (MQ=255) aaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAg < 1:4829748/35‑1 (MQ=255) aGCCAGTCCAGCGGACTGGCTTtttttgttttttt < 1:641020‑M2/35‑14 (MQ=255) aGCCAGTCCAGCGGACTGGCTTtttttgttttttg < 1:19003734‑M2/35‑14 (MQ=255) gCCAGTCCAGCGGACTGGCTTtttttgtttttttg < 1:16267233‑M2/35‑15 (MQ=255) gCCAGTCCAGCGGACTGGCTTtttttggttttttg < 1:8469514‑M2/35‑15 (MQ=255) gCCAGTCCAGCGGACTGGCTTtttttggtttttgg < 1:2665239‑M2/35‑15 (MQ=255) gCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCg < 1:816536/35‑1 (MQ=255) ccAGTCCAGCGGACTGGCTTttttgggttttttgg < 1:3710027‑M2/35‑16 (MQ=255) ccAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGa < 1:19009902/35‑1 (MQ=255) ccAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGa < 1:3887824/35‑1 (MQ=255) cAGTCCAGCGGACTGGCTTtttttgtttttttgaa < 1:9482729‑M2/35‑17 (MQ=255) cAGTCCAGCGGACTGGCTTtttttggttttttgga < 1:1639897‑M2/35‑17 (MQ=255) cAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaa < 1:7371600/35‑1 (MQ=255) cAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaa < 1:13199552/35‑1 (MQ=255) aGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat < 1:2333572/35‑1 (MQ=255) aGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat < 1:20264474/35‑1 (MQ=255) gTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaata < 1:11929168/35‑1 (MQ=255) tCCAGCGGACTGGCTTTTGCGGTTTTAGCGaataa < 1:1702153/35‑1 (MQ=255) ccAGCGGACTGGCTTTTGCGGTTTTAGCGaataat < 1:1700543/35‑1 (MQ=255) ccAGCGGACTGGCTTTTGCGGTTTTAGCGaataat < 1:17114918/35‑1 (MQ=255) ccAGCGGACTGGCTTTTGCGGTTTTAGCGaataat < 1:5019028/35‑1 (MQ=255) ccAGCGGACTGGCTTTTGCGGTTTTAGCGaataat < 1:3269316/35‑1 (MQ=255) aGCGGACTTGCTTTTGCGGTTTTAGCGAAtaataa > 1:5912941/1‑35 (MQ=255) aGCGGACTGGCTTTTGCGGTTTTAGCGAAtaataa < 1:7888625/35‑1 (MQ=255) cGGACTGGCTTTTGCGGTTTTAGCGAATAATAAAt < 1:6610496/35‑1 (MQ=255) cGGACTGGCTTTTGCGGTTTTAGCGAATAATAAAt < 1:16981678/35‑1 (MQ=255) cGGACTGGCTTTTGCGGTTTTAGCGAATAATAAAt < 1:12297069/35‑1 (MQ=255) cGGACTGGCTTTTGCGGTTTTAGCGAATAATAAAt < 1:3992423/35‑1 (MQ=255) ggACTGGCTTTTGCGGTTTTAGCGAATAATAAAtt < 1:4613112/35‑1 (MQ=255) ggACTGGCTTTTGCGGTTTTAGCGAATAATAAAtt < 1:9497221/35‑1 (MQ=255) gACTGGCTTTTGCGGTTTTAGCGAATAATAAATTg < 1:15481389/35‑1 (MQ=255) gACTGGCTTTTGCGGTTTTAGCGAATAATAAATTg < 1:14653002/35‑1 (MQ=255) gACTGGCTTTTGCGGTTTTAGCGAATAATAAATTg < 1:18331048/35‑1 (MQ=255) gACTGGCTTTTGCGGTTTTAGCGAATAATAAATTg < 1:13209680/35‑1 (MQ=255) gACTCGCTTTTGCGGTTTTAGCGAATAATAAATTg > 1:15760901/1‑35 (MQ=255) aCTGGCTTTTGCGGTTTTAGCGAATAATAAATTGc < 1:15414069/35‑1 (MQ=255) aCTGGCTTTTGCGGTTTTAGCGAATAATAAATTGc < 1:6036786/35‑1 (MQ=255) cTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCg > 1:7234545/1‑35 (MQ=255) cTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCg > 1:16521185/1‑35 (MQ=255) cTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCg > 1:17412257/1‑35 (MQ=255) tGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGt < 1:16592612/35‑1 (MQ=255) tGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGt < 1:78003/35‑1 (MQ=255) tGGCCTTTGCGGTTTTAGCGAATAATAAATTGCGt > 1:6035216/1‑35 (MQ=255) ggCTTTTGCGGTTTTAGCGAATAATAAATTGCGtt > 1:4912125/1‑35 (MQ=255) gCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTa < 1:18878874/35‑1 (MQ=255) gCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTa < 1:20069603/35‑1 (MQ=255) cTTTTGCGGTTTTAGCGAATAATAAATTGCGTTAc > 1:11172058/1‑35 (MQ=255) cTTTTGCGGTTTTAGCGAATAATAAATTGCGTTAc > 1:1723738/1‑35 (MQ=255) cTTTTGCGGTTTTAGCGAATAATAAATTGCGTTAc < 1:5030372/35‑1 (MQ=255) ttttGCGGTTTTAGCGAATAATAAATTGCGTTACt > 1:7977108/1‑35 (MQ=255) ttttGCGGTTTTAGCGAATAATAAATTGCGTTACt < 1:7333336/35‑1 (MQ=255) ttttGCGGTTTTAGCGAATAATAAATTGCGTTACt > 1:6985483/1‑35 (MQ=255) ttttGCGGTTTTAGCGAATAATAAATTGCGTTACt < 1:11436957/35‑1 (MQ=255) tttGCGGTTTTAGCGAATAATAAATTGCGTTACtt < 1:396326/35‑1 (MQ=255) tttGCGGTTTTAGCGAATAATAAATTGCGTTACtt < 1:19357650/35‑1 (MQ=255) | AAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTT > REL606/4601541‑4601609 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |