Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,893,550 | +G | 4.7% | intergenic (+5/‑51) | kup → / → insJ‑5 | potassium transporter/IS150 hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,893,550 | 1 | .→G | 4.7% | 20.6 0.0 ‑0.0 | 128 | intergenic (+5/‑51) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein |
Reads supporting (aligned to +/- strand): new base (3/3): ref base (67/55): total (70/58) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.16e-01 |
Only 100 of 134 total aligned reads displayed.
ATCGAACTGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGACGATGAAA > REL606/3893516‑3893584 | aTCGAACTGGGTACTCAGGTCGAAATCTAACGCC‑‑a < 1:3524980/35‑1 (MQ=255) cGAACTGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑Ga > 1:8567957/1‑35 (MQ=255) cGAACTGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑Ga > 1:13199/1‑35 (MQ=255) gAACTGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GAc > 1:8466115/1‑35 (MQ=255) gAACTGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GAc < 1:15125974/35‑1 (MQ=255) gAACTGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GAc < 1:13000793/35‑1 (MQ=255) aaCTGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑ggac < 1:15948582/35‑4 (MQ=255) aaCTGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACt < 1:2567460/35‑1 (MQ=255) aaCTGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACt < 1:12547314/35‑1 (MQ=255) aaCTGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACt > 1:13942699/1‑35 (MQ=255) aCTGGGTACTCAGTTCGAAATCTAACGCC‑‑A‑‑GACTg > 1:5880668/1‑35 (MQ=255) aCTGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTg < 1:18522639/35‑1 (MQ=255) aCTGGGTACTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGt > 1:3397272/1‑35 (MQ=37) aCTGGGTACTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGt > 1:6001015/1‑35 (MQ=37) aCTGGGTACTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGt > 1:10403113/1‑35 (MQ=37) cTGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGt < 1:8037827/35‑1 (MQ=255) cTGGGTACTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTa > 1:387057/1‑35 (MQ=37) cTGGGTACTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTa > 1:43534/1‑35 (MQ=37) cTGGGTACTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTa > 1:8872603/1‑35 (MQ=37) cTGGGTACTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTa < 1:16408655/35‑1 (MQ=37) tGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTa < 1:2436759/35‑1 (MQ=255) tGGGTACTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTAc > 1:12404993/1‑35 (MQ=38) tGGGTACTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTAc > 1:407990/1‑35 (MQ=38) tGGGTACTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTAc < 1:1877561/35‑1 (MQ=38) tGGGTACTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTAc > 1:7838440/1‑35 (MQ=38) tGGGTACTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTAc > 1:7079601/1‑35 (MQ=38) gggTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTAc < 1:12590829/35‑1 (MQ=255) gggTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTAc < 1:3814987/35‑1 (MQ=255) ggTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACt < 1:14041386/35‑1 (MQ=255) ggTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACt < 1:4809957/35‑1 (MQ=255) ggTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACt < 1:17311730/35‑1 (MQ=255) ggTACTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTACTg > 1:11720369/1‑35 (MQ=38) gTACTCATGTCGAAATCTAACGCC‑‑‑‑‑GACTGTACTGc > 1:10712625/1‑35 (MQ=37) gTACTCAGGTCGAAATCTAACGCC‑‑AG‑GACTGTACt > 1:1687942/1‑35 (MQ=37) gTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTg < 1:7954058/35‑1 (MQ=255) gTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTg < 1:18982549/35‑1 (MQ=255) gTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTg < 1:4901076/35‑1 (MQ=255) tACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGc > 1:13813666/1‑35 (MQ=255) tACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGc > 1:1105679/1‑35 (MQ=255) aCTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCa > 1:6268134/1‑35 (MQ=255) aCTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCa < 1:17349458/35‑1 (MQ=255) aCTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCa < 1:8589558/35‑1 (MQ=255) aCTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCa > 1:15360774/1‑35 (MQ=255) aCTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTACTGCAc < 1:2493460/35‑1 (MQ=38) cTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCAc > 1:12056090/1‑35 (MQ=255) cTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCAc < 1:13449550/35‑1 (MQ=255) cTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCAc < 1:10172757/35‑1 (MQ=255) cTCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTACTGCAcc < 1:5129361/35‑1 (MQ=38) tCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCAcc < 1:12221382/35‑1 (MQ=255) tCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCAcc < 1:13422155/35‑1 (MQ=255) tCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTACTGCAccc > 1:9276157/1‑35 (MQ=38) tCAGGTCGAAATCTAACGCC‑‑‑‑‑GACTGTACTGCAccc < 1:20604119/35‑1 (MQ=38) aGGTCGAAATCTAACGCC‑‑AG‑GACTGTACTGCActc > 1:5969988/1‑33 (MQ=25) ggTCGAAATCTAACGCC‑‑AGGGACTGTACTGCAccc < 1:2156930/35‑1 (MQ=25) ggTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCACCCAt > 1:4080697/1‑35 (MQ=255) ggTCGAAATCTAACGCC‑‑‑‑‑GACTGTACTGAACCCAtt < 1:2324917/35‑1 (MQ=37) gTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCACCCAtt < 1:3058667/35‑1 (MQ=255) gTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCACCCAtt > 1:11448860/1‑35 (MQ=255) gTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCACCCAtt > 1:18337572/1‑35 (MQ=255) tCGAAATCTAACGCC‑‑AG‑GACTGTACTGCACCCAtt < 1:11300379/35‑1 (MQ=25) tCGAAATCTAACGCC‑‑‑‑‑GACTGTACTGCACCCAtttt > 1:7868169/1‑35 (MQ=25) tCGAAATCTAACGCC‑‑‑‑‑GACTGTACTGCACCCAtttt > 1:12577838/1‑35 (MQ=25) cGAAATCTAACGCC‑‑A‑‑GACTGTACTGCACCCAtttt < 1:12837366/35‑1 (MQ=255) cGAAATCTAACGCC‑‑A‑‑GACTGTACTGCACCCAtttt > 1:19607082/1‑35 (MQ=255) cGAAATCTAACGCC‑‑A‑‑GACTGTACTGCACCCAtttt > 1:6247719/1‑35 (MQ=255) cGAAATCTAACGCC‑‑‑‑‑GACTGTACTGCACCCATTttg < 1:11696013/35‑1 (MQ=25) cGAAATCTAACG‑C‑‑A‑‑GACTGTACTGCACCCATTttg < 1:6078691/35‑1 (MQ=25) gAAATCTAACGCCAGA‑‑GACTGTACTGCACCCAttt < 1:8936458/35‑1 (MQ=18) gAAATCTAACGCCAGA‑‑GACTGTACTGCACCCAttt < 1:15502501/35‑1 (MQ=18) gAAATCTAACGCC‑‑A‑‑GACTGTACTGCACCCATTttg < 1:12475066/35‑1 (MQ=255) gAAATCTAACGCC‑‑A‑‑GACTGTACTGCACCCATTttg > 1:6636512/1‑35 (MQ=255) gAAATCTAACGCC‑‑A‑‑GACTGTACTGCACCCATTttg > 1:7463737/1‑35 (MQ=255) gAAATCTAACGCC‑‑‑‑‑GACTGTACTGCACCCATTttgt < 1:12325836/35‑1 (MQ=21) aaaaTCTAACGCC‑‑‑‑‑GACTGTACTGCACCCATTttgt < 1:13333545/34‑1 (MQ=21) aaaTCTAACGCC‑‑A‑‑GACTGTACTGCACCCATTttgt > 1:3448004/1‑35 (MQ=255) aaTCTAACGCC‑‑A‑‑GACTGTACTGCACCCATTttgtt < 1:934360/35‑1 (MQ=255) aaTCTAACGCC‑‑A‑‑GACTGTACTGCACCCATTttgtt > 1:17124981/1‑35 (MQ=255) aTCTAACGCC‑‑‑‑‑GACTGTACTGCACCCATTTTGTTgg > 1:18215698/1‑35 (MQ=18) tCTAACGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTgg > 1:10230123/1‑35 (MQ=255) tCTAACGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTgg > 1:8016303/1‑35 (MQ=255) tCTAACGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTgg > 1:241903/1‑35 (MQ=255) tCTAACGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTgg > 1:19676540/1‑35 (MQ=255) cTAACGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGa < 1:9375308/35‑1 (MQ=255) cTAACGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGa < 1:12577486/35‑1 (MQ=255) cTAACGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGa < 1:4759200/35‑1 (MQ=255) cTAACGCC‑‑‑‑‑GACTGTACTGCACCCATTTTGTTGGAc < 1:5101731/35‑1 (MQ=17) cTAACGCC‑‑‑‑‑GACTGTACTGCACCCATTTTGTTGGAc < 1:3646778/35‑1 (MQ=17) tAACGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTGGGAc < 1:10046849/35‑1 (MQ=255) aaCGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGACg > 1:11718126/1‑35 (MQ=255) aaCGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGACg > 1:15434413/1‑35 (MQ=255) aaCGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGACg > 1:15502888/1‑35 (MQ=255) aaCGCC‑‑‑‑‑GACTGTACTGCACCCATTTTGTTGGACGa > 1:7885979/1‑35 (MQ=14) aCGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGACGa > 1:678807/1‑35 (MQ=255) aCGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGACGa > 1:7307590/1‑35 (MQ=255) cGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGACGAt > 1:19050878/1‑35 (MQ=255) cGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGACGAt < 1:15207157/35‑1 (MQ=255) cGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGACGAt < 1:7521486/35‑1 (MQ=255) cc‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGACGATGa > 1:11225130/1‑35 (MQ=255) c‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:3007875/1‑35 (MQ=40) a‑‑GACTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:514955/1‑35 (MQ=38) | ATCGAACTGGGTACTCAGGTCGAAATCTAACGCC‑‑A‑‑GACTGTACTGCACCCATTTTGTTGGACGATGAAA > REL606/3893516‑3893584 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |