New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3331631 =78 (0.760)5 (0.070) 4/34 NT 9.4% coding (257/975 nt) yhdH predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding
?REL606 = 4600665 41 (0.560)coding (36/606 nt) osmY periplasmic protein

CGCCAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3331671‑3331631
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagCAGAGTTTTCGAAATCTTCAGT  <  REL606/4600665‑4600644
                                                               
CGCCAGCCCACCCCAGTGGTTTTCACCAACGCCCC                              >  1:11926932/1‑35
CGCCAGCCCACCCCAGTGGTTTTCACCAACGCCCC                              <  1:5869772/35‑1
CGCCAGCCCACCCCAGTGGTTTTCACCAACGCCCC                              >  1:13036214/1‑35
  CCAGCCCACCCCAGTGGTTTTCACCAACGCCCCAG                            >  1:4098032/1‑35
  CCAGCCCACCCCAGTGGTTTTCACCAACGCCCCAG                            <  1:11765225/35‑1
  CCAGCCCACCCCAGTGGTTTTCACCAACGCCCCAG                            <  1:15811124/35‑1
  CCAGCCCACCCCAGTGGTTTTCACCAACGCCCCAG                            <  1:1823465/35‑1
   CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC                           >  1:3351380/1‑35
   CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC                           <  1:5158062/35‑1
   CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC                           >  1:2728488/1‑35
   CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC                           >  1:20208599/1‑35
   CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC                           <  1:19231315/35‑1
   CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC                           >  1:1688172/1‑35
   CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC                           >  1:16230035/1‑35
    AGCCCACCCCAGTGGTTTTCACCAACGCCCCAGCC                          <  1:574439/35‑1
    AGCCCACCCCAGTGGTTTTCACCAACGCCCCAGCC                          <  1:12109629/35‑1
     GCCCACCCCAGTGGTTTTCACCAACGCCCCAGCCA                         <  1:10695000/35‑1
     GCCCACCCCAGTGGTTTTCACCAACGCCCCAGCCA                         >  1:4501450/1‑35
     GCCCACCCCAGTGGTTTTCACCAACGCCCCAGCCA                         <  1:10676942/35‑1
      CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAt                        >  1:5761904/1‑34
      CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG                        <  1:5863603/35‑1
      CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG                        <  1:8281061/35‑1
      CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG                        <  1:3450504/35‑1
      CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG                        <  1:20151774/35‑1
      CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG                        >  1:12166031/1‑35
      CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG                        >  1:10073672/1‑35
                        ACCGACGCCCCAGCCAGCAGAGTTTTCGAAATCTT      <  1:2358331/35‑1
                         aCAACACCCCAGCCAGCAGAGTTTTCGAAATCTTC     <  1:2733801/34‑1
                         CCAACCCCCCAGCCAGCAGAGTTTTCGAAATCTTC     <  1:7307249/35‑1
                          CAACCCCCCAGCCAGCAGAGTTTTCGAAATCTTCA    <  1:7458817/35‑1
                           AACCCCCCAGCCAGCAGAGTTTTCGAAATCTTCAG   <  1:2823997/35‑1
                            ccaCCCCAGCCAGCAGAGTTTTCGAAATCTTCAGT  <  1:13832297/32‑1
                                                               
CGCCAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3331671‑3331631
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagCAGAGTTTTCGAAATCTTCAGT  <  REL606/4600665‑4600644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.