New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1255973 =72 (0.700)12 (0.140) 4/40 NT 19.0% coding (130/2868 nt) ycgV predicted adhesin
?REL606 = 3223859 42 (0.490)coding (537/696 nt) yraI predicted periplasmic pilin chaperone

Only 100 of 147 total aligned reads displayed.

GTGCCATATTGACTTCCTGTATCAGCAGCTATCAGCAGGGGGGGAAATATAATTGCATTCAAACCAATA  >  REL606/1255939‑1256007
                                  |                                   
gTGCCATATTGCCTTCCTGTATCAGCAGCTATcag                                     <  1:865102/35‑1 (MQ=255)
gTGCCATATTGACTTCCTGTATCAGCAGCTATcag                                     >  1:13646613/1‑35 (MQ=255)
cccaactgaatattacgtcgtatttgccggattgg                                     <  1:17789208‑M1/1‑1 (MQ=255)
cccaactgaatattacgtcgtatttgccggattgg                                     >  1:13410612‑M1/35‑35 (MQ=255)
cccaactgaatattacgtcgtatttgccggattgg                                     >  1:1324206‑M1/35‑35 (MQ=255)
 tGCCATATTGACTTCCTGTATCAGCAGCTATccgc                                    >  1:12510119/1‑35 (MQ=255)
 tGCCATATTGACTTCCTGTATCAGCAGCTATcagc                                    >  1:19219462/1‑35 (MQ=255)
 tGCCATATGGACTTCCTGTATCAGCAGCTATcagc                                    <  1:2161427/35‑1 (MQ=255)
 ccaactgaatattacgtcgtatttgccggattgGc                                    <  1:16487033‑M1/2‑1 (MQ=255)
  gCCATATTGCCTTCCTGTATCAGCAGCTATcagcn                                   <  1:18198877/35‑1 (MQ=255)
  gCCATATTGACTTCCTGTATCAGCAGCTATcagca                                   <  1:10414337/35‑1 (MQ=255)
  cccATATTGCCTTCCTGTATCAGCAGCTATcagca                                   <  1:5523499/34‑1 (MQ=255)
  cccATATTGCCTTCCTGTATCAGCAGCTATcagca                                   <  1:12059573/34‑1 (MQ=255)
   ccATTTTGACTTCCTGTATCAGCAGCTATcagcag                                 <  1:19410819/35‑1 (MQ=255)
   ccATATTGACTTCCTGTATCAGCAGCTATcagccg                                  >  1:18518823/1‑33 (MQ=255)
   ccATATTGACTTCCTGTATCAGCAGCTATcagcag                                 >  1:19855069/1‑35 (MQ=255)
   aactgaatattacgtcgtatttgccggattgGCAg                                 >  1:14751169‑M1/32‑35 (MQ=255)
   aactgaatattacgtcgtatttgccggattgGCAg                                 >  1:189368‑M1/32‑35 (MQ=255)
     ctgaatattacgtcgtatttgccggattgGCAggg                               <  1:4100215‑M1/6‑1 (MQ=255)
     ctgaatattacgtcgtatttgccggattgGCAggg                               <  1:9596495‑M1/6‑1 (MQ=255)
     atatTGACTTCCTGTATCAGCAGCTATCAGCAggg                               >  1:20134134/1‑35 (MQ=255)
     atatTGACTTCCTGTATCAGCAGCTATCAGCAggg                               >  1:19869604/1‑35 (MQ=255)
       gaatattacgtcgtatttgccggattgGCAggggg                             <  1:3485255‑M1/8‑1 (MQ=255)
       gaatattacgtcgtatttgccggattgGCAggggg                             <  1:4602869‑M1/8‑1 (MQ=255)
       gaatattacgtcgtatttgccggattgGCAggggg                             <  1:7830448‑M1/8‑1 (MQ=255)
       gaatattacgtcgtatttgccggattgGCAggggg                             <  1:17261712‑M1/8‑1 (MQ=255)
       atTGACTTCCTGTATCAGCAGCTATCAGCAggggg                             <  1:12953377/35‑1 (MQ=255)
        ttGCCTTCCTGTATCAGCAGCTATCAGCAgggggg                            <  1:11108347/35‑1 (MQ=255)
        ttGCCTTCCTGTATAAGCAGCCATCAGCAgggggg                            <  1:3109674/35‑1 (MQ=25)
        ttGACTTCCTGTATCAGCAGCTATCAGCAgggggg                            >  1:19069767/1‑35 (MQ=255)
        aatattacgtcgtatttgccggattgGCAgggggg                            <  1:6567349‑M1/9‑1 (MQ=255)
         tGACTTCCTGTATCAGCAGCTATCAGCAggggggg                           <  1:9277343/35‑1 (MQ=255)
         tGACTTCCTGTACCAGCAGCTATCAGCAggggggg                           >  1:1808782/1‑35 (MQ=255)
         atattacgtcgtatttgccggattgGCAggggggg                           <  1:15299865‑M1/10‑1 (MQ=255)
         atattacgtcgtatttgccggattgGCAggggggg                           <  1:3945430‑M1/10‑1 (MQ=255)
          tattacgtcgtatttgccggattgGCAGGGGGGGa                          <  1:3219985‑M1/11‑1 (MQ=255)
          gccTTCCTGTATCAGCAGCTATCAGCAGGGGGGGa                          <  1:20304003/33‑1 (MQ=255)
          gACTTCCTGTATCAGCAGCTATCAGCAGGGGGGGa                          <  1:14261701/35‑1 (MQ=255)
           attacgtcgtatttgccggattgGCAGGGGGGGaa                         <  1:9875090‑M1/12‑1 (MQ=255)
           aCTTCCTGTATCAGCAGCTATCAGCAgggggggga                         >  1:6570739/1‑33 (MQ=255)
           aCTTCCTGTATCAGCAGCTATCAGCAGGGGGGGaa                         <  1:9527569/35‑1 (MQ=255)
           aCTTCCTGTATCAGCAGCTATCAGCAGGGGGGGaa                         >  1:10031795/1‑35 (MQ=255)
            ttacgtcgtatttgccggattgGCAGGGGGGGaaa                        <  1:6505031‑M1/13‑1 (MQ=255)
            cTTCCTGTATCAGCAGCTATCAGCAGGGGGGGgaa                        >  1:7918130/1‑35 (MQ=255)
            cTTCCTGTATCAGCAGCTATCAGCAGGGGGGGaaa                        <  1:5420008/35‑1 (MQ=255)
             ttCCTGTATCAGCAGCTATCAGCAGGGGGGGGAat                       >  1:7053684/1‑35 (MQ=255)
             ttCCTGTATCAGCAGCTATCAGCAGGGGGGGGAat                       >  1:19943127/1‑35 (MQ=255)
             ttCCTGTATCAGCAGCTATCAGCAGGGGGGGAAat                       <  1:1004883/35‑1 (MQ=255)
             ttCCTGTATCAGCAGCTATCAGCAGGGGGGGAAat                       <  1:5337419/35‑1 (MQ=255)
             ttCCTGTATCAGCAGCTATCAGCAGGGGGGGAAat                       >  1:11138150/1‑35 (MQ=255)
             ttCCTGTATCAGCAGCTATCAGCAGGGGGGGAAat                       >  1:9842560/1‑35 (MQ=255)
              tCCTGTATCAGCAGCTATCAGCAGGGGGGGgaaaa                      >  1:1182796/1‑33 (MQ=38)
              tCCTGTATCAGCAGCTATCAGCAGGGGGGGAAata                      <  1:2261735/35‑1 (MQ=255)
              acgtcgtatttgccggattgGCAGGGGGggaaaaa                      <  1:5174791‑M1/15‑3 (MQ=255)
              acgtcgtatttgccggattgGCAGGGGGggaaaaa                      <  1:16706786‑M1/15‑3 (MQ=255)
              acgtcgtatttgccggattgGCAGGGGGggaaaaa                      <  1:16270749‑M1/15‑3 (MQ=255)
              acgtcgtatttgccggattgGCAGGGGGggaaaaa                      <  1:19415412‑M1/15‑3 (MQ=255)
              acgtcgtatttgccggattgGCAGGGGGggaaaaa                      <  1:11405117‑M1/15‑3 (MQ=255)
              acgtcgtatttgccggattgGCAGGGGGggaaaaa                      <  1:2173898‑M1/15‑3 (MQ=255)
               ccTGTATCAGCAGCTATCAGCAGGGGGGGAAatat                     <  1:18746643/35‑1 (MQ=255)
                cTGTATCAGCAGCTATCAGCAGGGGGGGGAAtata                    >  1:11472482/1‑35 (MQ=255)
                cTGTATCAGCAGCTATCAGCAGGGGGGGGAAtata                    >  1:14467064/1‑35 (MQ=255)
                 tGTATCAGCAGCTATCAGCAGGGGGGGAAATATaa                   <  1:6969611/35‑1 (MQ=255)
                 tGTATCAGCAGCTATCAGCAGGGGGGGAAATATaa                   <  1:10223872/35‑1 (MQ=255)
                  gTATCAGCAGCTATCAGCAGGGGGGGGAATATAAt                  >  1:14275553/1‑35 (MQ=255)
                   tATCAGCAGCTATCAGCAGGGGGGGGAATATAAtt                 >  1:3621009/1‑35 (MQ=255)
                   tATCAGCAGCTATCAGCAGGGGGGGGAATATAAtt                 >  1:10837810/1‑35 (MQ=255)
                   tATCAGCAGCTATCAGCAGGGGGGGAAATATAAtt                 <  1:2959905/35‑1 (MQ=255)
                   tATCAGCAGCTATCAGCAGGGGGGGAAATATAAtt                 <  1:4161995/35‑1 (MQ=255)
                    aTCAGCAGCTATCAGCAGGGGGGGAAATATAATTg                <  1:890605/35‑1 (MQ=255)
                    aTCAGCAGCTATCAGCAGGGGGGGAAATATAATTg                <  1:12757944/35‑1 (MQ=255)
                     tCAGCAGCTATCAGCAGGGGGGGAAATATAATTGc               <  1:1947686/35‑1 (MQ=255)
                     tCAGCAGCTATCAGCAGGGGGGGAAATATAATTGc               <  1:17103971/35‑1 (MQ=255)
                       agcagcTATCAGCAGGGGGGGAAATATAATTGCAt             <  1:2298955/35‑1 (MQ=255)
                        gcagcTATCAGCAGGGGGGGAAATATAATTGCAtt            <  1:15804797/35‑1 (MQ=255)
                        gcagcTATCAGCAGGGGGGGAAATATAATTGCAtt            >  1:4470541/1‑35 (MQ=255)
                         cagcTATCAGCAGGGGGGGAAATATAATTGCATTc           <  1:3297093/35‑1 (MQ=255)
                         cagcTATCAGCAGGGGGGGAAATATAATTGCATTc           <  1:10616223/35‑1 (MQ=255)
                          agcTATCAGCAGGGGGGGAAATATAATTGCATTCa          <  1:9950646/35‑1 (MQ=255)
                          agcTATCAGCAGGGGGGGAAATATAATTGCATTCa          <  1:7328938/35‑1 (MQ=255)
                           gcTATCAGCAGGGGGGGAAATATAATTGCATTCaa         <  1:17467798/35‑1 (MQ=255)
                            cTATCAGCAGGGGGGGAAATATAATTGCATTCaaa        <  1:10444685/35‑1 (MQ=255)
                            cTATCAGCAGGGGGGGAAATATAATTGCATTCaaa        <  1:18522178/35‑1 (MQ=255)
                            cTATCAGCAGGGGGGGAAATATAATTGCATTCaaa        >  1:6845032/1‑35 (MQ=255)
                             tATCAGCAGGGGGGGAAATATAATTGCATTCAAAc       <  1:17409975/35‑1 (MQ=255)
                              aTCAGCAGGGGGGGAAATATAATTGCATTCAAAcc      >  1:6116264/1‑35 (MQ=255)
                               tCAGCAGGGGGGGGAAATATAATTGCATTCAAAcc      >  1:13582326/1‑35 (MQ=38)
                               tCAGCAGGGGGGGGAAATATAATTGCATTCAAAcc      >  1:15111042/1‑35 (MQ=38)
                               tCAGCAGGTGGTGAAATATAATTGCATTCAAACCa     >  1:13005919/1‑35 (MQ=38)
                               tCAGCAGGTGGGGAAATATAATTGCATTCAAACCa     >  1:18015229/1‑35 (MQ=255)
                               tCAGCAGGGGGGGAAATATAATTGCATTCAAACCa     <  1:19503307/35‑1 (MQ=255)
                               tCAGCAGGGGGGGAAATATAATTGCATTCAAACCa     <  1:1921070/35‑1 (MQ=255)
                               tCAGCAGGGGGGGAAATATAATTGCATTCAAACCa     >  1:16791373/1‑35 (MQ=255)
                               tCAGCAGGGGGGGAAATATAATTGCATTCAAACCa     >  1:1671757/1‑35 (MQ=255)
                               tCAGCAGGGGGGGAAATATAATTGCATTCAAACCa     <  1:14065622/35‑1 (MQ=255)
                                cagcagGGGGGTAAATATAATTGCATTCAAACCaa    >  1:17300128/1‑35 (MQ=255)
                                cagcagGGGGGGAAATATAATTGCATTCAAACCag    >  1:621473/1‑34 (MQ=255)
                                 agcagGGGGGGAAATATAATTGCATTCAAACCAAt   >  1:1459979/1‑35 (MQ=255)
                                  GCAGGGGGGGAAATATAATTGCATTCAAACCAATa  >  1:14288450‑M1/1‑35 (MQ=255)
                                  GCAGGGGGGGAAATATAATTGCATTCAAACCAATa  >  1:20347213‑M1/1‑35 (MQ=255)
                                  |                                   
GTGCCATATTGACTTCCTGTATCAGCAGCTATCAGCAGGGGGGGAAATATAATTGCATTCAAACCAATA  >  REL606/1255939‑1256007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.