New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 449635 =24 (0.230)5 (0.070) 3/34 NT 11.1% coding (1050/1551 nt) ylaB conserved inner membrane protein
?REL606 = 3144237 63 (0.870)coding (314/1746 nt) dnaG DNA primase

Only 100 of 138 total aligned reads displayed.

AATCTTGAAGTGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGATCGAGCGCCATCAGAGGCAAACGCTT  >  REL606/3144203‑3144271
                                  |                                  
aaTCTTGAAGTGCCATTTGAAGCAGGCAGCTGccc                                    >  1:17618711/1‑35 (MQ=255)
aaTCTTGAAGTGCCATTTGAAGCAGGCAGCGGccc                                    >  1:5441445/1‑35 (MQ=255)
aaTCTTGAAGTGCCATTTGAAGCAGGCAGCGGccc                                    <  1:16391621/35‑1 (MQ=255)
  tattgaAGTGCCATTTGAAGCAGGCAGCGGCCCca                                  >  1:19549700‑M2/3‑33 (MQ=255)
  tCTTGAAGTGCCATTTGAAGCAGGCAGCGGCCCca                                  >  1:18721836‑M2/1‑33 (MQ=255)
  tCTTGAAGTGCCATTTGAAGCAGGCAGCGGCCCca                                  >  1:11458835‑M2/1‑33 (MQ=255)
   cTTGAAGTGCCATTTGAAGCAGGCAGCGGCCCcag                                 <  1:13429530‑M2/35‑4 (MQ=255)
   cTTGAAGTGCCATTTGAAGCAGGCAGCGGCCCcag                                 >  1:6046492‑M2/1‑32 (MQ=255)
    ttGAAGTGCCATTTGAAGCAGGCAGCGGCCCcagc                                >  1:20518156‑M2/1‑31 (MQ=255)
      gAAGTGCCATTTGACGCAGGCAGCGGCCccaccca                              >  1:10249430/1‑35 (MQ=37)
      gAAGTGCCATTTGAAGCAGGCAGCGGCCCcagcca                              <  1:8017071‑M2/35‑7 (MQ=255)
       aaGTGCCATTTGAAGCAGGCAGCGGCCCcagccag                             <  1:11627382‑M2/35‑8 (MQ=255)
       aaGTGCCATTTGAAGCAGGCAGCGGCCCcagccag                             <  1:7795776‑M2/35‑8 (MQ=255)
       aaGTGCCATTTGAAGCAGGCAGCGGCCCcagccag                             >  1:14692364‑M2/1‑28 (MQ=255)
       aaGTGCCATTTGAAGCAGGCAGCGGCCCcagccag                             <  1:8251241‑M2/35‑8 (MQ=255)
        aGTGCCATTTGAAGCAGGCAGCGTCCCCAGCCAGa                            >  1:4593118/1‑35 (MQ=255)
        aGTGCCATTTGAAGCAGGCAGCGGGCCCAGCCAGa                            >  1:1725656/1‑35 (MQ=255)
        aGTGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGa                            >  1:3580109/1‑35 (MQ=255)
        aGTGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGa                            >  1:15837079/1‑35 (MQ=255)
        aGTGCCATTTGAAGCAGGCAGCGGCCACAGCCAGa                            >  1:5393820/1‑35 (MQ=255)
         gTGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGAt                           <  1:18361432/35‑1 (MQ=255)
         gTGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGAt                           <  1:8340679/35‑1 (MQ=255)
          tGCCTTTTGAAGCAGGCAGCGGCCCCAGCCAGATc                          <  1:16468367/35‑1 (MQ=255)
          tGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGATc                          <  1:15436766/35‑1 (MQ=255)
          tGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGATc                          <  1:10953098/35‑1 (MQ=255)
           gCCATTTGAAGCAGGCAGCGGCCCCAGCCAGATCg                         <  1:7207575/35‑1 (MQ=255)
            ccATTTGAAGCAGGCAGCGGCCCCAGCCAGATCGa                        <  1:19432387/35‑1 (MQ=255)
             cttttGAAGCAGGCAGCGGCCCCAGCCAGATCGAg                       <  1:1409036/33‑1 (MQ=255)
             cATTTGAAGCAGGCAGCGGCCCCCGCCAGATCGAg                       >  1:8669664/1‑35 (MQ=255)
             cATTTGAAGCAGGCAGCGGCCCCCGCCAGATCGAg                       >  1:11736842/1‑35 (MQ=255)
             cATTTGAAGCAGGCAGCGGCCCCAGCCAGATCGAg                       >  1:12017496/1‑35 (MQ=255)
             cATTTGAAGCAGGCAGCGGCCCCAGCCAGATCGAg                       >  1:4635323/1‑35 (MQ=255)
             cATTTGAAGCAGGCAGCGGCCCCAGCCAGATCGAg                       >  1:15590423/1‑35 (MQ=255)
             cATTTGAAGCAGGCAGCGGCCCCAGCCAGATCGAg                       >  1:10872514/1‑35 (MQ=255)
              ttttGAAGCAGGCAGCGGCCCCAGCCAGATCGAgc                      <  1:11668951/34‑1 (MQ=255)
              aTTTGAAGCAGGCAGCGGCCCCCGCCAGGTCGAgc                      >  1:8048775/1‑35 (MQ=37)
              aTTTGAAGCAGGCAGCGGCCCCAGCCAGATCGAgc                      <  1:7862778/35‑1 (MQ=255)
               tttGAAGCAGGCAGCGGCCCCAGCCAGATCGAgcg                     >  1:15626544/1‑35 (MQ=255)
                ttGAAGCAGGCAGCGGCCCCAGCCAGATCGAgcgc                    <  1:4308431/35‑1 (MQ=255)
                ttGAAGCAGGCAGCGGCCCCAGCCAGATCGAgcgc                    >  1:19728689/1‑35 (MQ=255)
                 tGAAGCAGGCAGCGGCCCCAGCCAGATCGAGCGcc                   >  1:20376270/1‑35 (MQ=255)
                  gaggcaggcagCGGCCCCAGCCAGATCGAGCGCCa                  <  1:13327559/32‑1 (MQ=255)
                  gAAGCAGGCAGCGGCCCCAGCCAGATCGAGCGCCa                  >  1:17625284/1‑35 (MQ=255)
                   aaGCAGGCAGCGGCCCCAGCCAGATCGAGCGCCAt                 >  1:15822126/1‑35 (MQ=255)
                    aGCGGGCAGCGGCCCCAGCCAGATCGAGCGCCATc                <  1:12037005/35‑1 (MQ=255)
                    aGCAGGCAGCTGCCCCAGCCAGATCGAGCGCCATc                >  1:8194554/1‑35 (MQ=255)
                    aGCAGGCAGCGGCCCCAGCCAGATCGAGCGCCATc                <  1:20108040/35‑1 (MQ=255)
                    aGCAGGCAGCGGCCCCAGCCAGATCGAGCGCCATc                <  1:16504485/35‑1 (MQ=255)
                     gcgggcagCGGCCCCAGCCAGATCGAGCGCCATCa               <  1:8244765/32‑1 (MQ=255)
                     ccaggcagCGGCCCCAGCCAGATCGAGCGCCATCa               <  1:714694/34‑1 (MQ=255)
                      cgggcagCGGCCCCAGACAGATCGAGCGCCATCag              <  1:18657288/33‑1 (MQ=38)
                      caggcagCGGCCCCAGCCAGATCGAGCGCCATCag              >  1:7212620/1‑35 (MQ=255)
                      caggcagCGGCCCCAGCCAGATCGAGCGCCATCag              >  1:2467674/1‑35 (MQ=255)
                      caggcagCGGCCCCAGCCAGATCGAGCGCCATCag              <  1:17413332/35‑1 (MQ=255)
                      caggcagCGGCCCCAGCCAGATCGAGCGCCATCag              >  1:2865360/1‑35 (MQ=255)
                       aggcagCGGCCCCAGCCAGATCGAGCGCCATCaca             >  1:2771283/1‑33 (MQ=255)
                        ggccgCGGCCCcagccagtcgcccatatcttcaaa            >  1:6606941‑M2/1‑11 (MQ=255)
                        ggcagCGGCCCCAGCCAGATCGAGCGCCATCagag            >  1:7496204/1‑35 (MQ=255)
                        ggcagCGGCCCCAGCCAGATCGAGCGCCATCagag            <  1:8105993/35‑1 (MQ=255)
                        ggcagCGGCCCCAGCCAGATCGAGCGCCATCagag            <  1:16186595/35‑1 (MQ=255)
                         gcggCGCCCCCAGCCAGATCGAGCGCCATCAGAgg           <  1:90565/32‑1 (MQ=37)
                         gcagCGGCCCCAGCCAGATCGAGCGCCATCAGAgg           >  1:1123316/1‑35 (MQ=255)
                         gcagCGCCCCCAGCCAGATCGAGCGCCATCAGAgg           <  1:10302852/35‑1 (MQ=255)
                          cagCGGCCCCAGCCAGATCGAGCGCCATCAGAGGc          >  1:4478603/1‑35 (MQ=255)
                          cagCGGCCCCAGCCAGATCGAGCGCCATCAGAGGc          <  1:20225180/35‑1 (MQ=255)
                          cagCGGCCCCAGCCAGATCGAGCGCCATCAGAGGc          <  1:15138908/35‑1 (MQ=255)
                          cagCGGCCCCAGCCAGATCGAGCGCCATCAGAGGc          >  1:13449893/1‑35 (MQ=255)
                           ggcGGCCCcagccagtcgcccatatcttcaaagac         >  1:13004132‑M2/2‑8 (MQ=255)
                           agCGGCCCCAGCCAGATCGAGCGCCATCAGAGGCa         >  1:695804/1‑35 (MQ=255)
                           agCGGCCCCAGCCAGATCGAGCGCCATCAGAGGCa         >  1:5286685/1‑35 (MQ=255)
                           agCGGCCCCAGCCAGATCGAGCGCCATCAGAGGCa         >  1:9611299/1‑35 (MQ=255)
                           agCGGCCCCAGCCAGATCGAGCGCCATCAGAGGCa         >  1:15575667/1‑35 (MQ=255)
                           agCGGCCCCAGCCAGATCGAGCGCCATCAGAGGCa         >  1:1973936/1‑35 (MQ=255)
                            gCGGCCCcagccagtcgcccatatcttcaaagacg        >  1:6691224‑M2/1‑7 (MQ=255)
                            ccgCCCCcagccagtcgcccatatcttcaaagacg        >  1:162656‑M2/2‑7 (MQ=255)
                             ggcccccAGCCAGATCGAGCGCCATCAGAGGCaaa       <  1:18757502/32‑1 (MQ=255)
                             cGGCCCCAGCCAGATCGAGCGCCATCAGAGGCaaa       <  1:10151887/35‑1 (MQ=255)
                             cGCCCCcagccagtcgcccatatcttcaaagacgc       >  1:18349036‑M2/1‑6 (MQ=255)
                              ggCCCCAGCCAGATCGAGCGCCATCAGAGGCaaaa      >  1:13578036/1‑34 (MQ=255)
                              ggCCCCAGCCAGATCGAGCGCCATCAGAGGCAAAc      >  1:2132795/1‑35 (MQ=255)
                              ggCCCCAGCCAGATCGAGCGCCATCAGAGGCAAAc      >  1:414112/1‑35 (MQ=255)
                              gcccccagccagtcgcccatatcttcaaagacgct      >  1:17817003‑M2/3‑5 (MQ=255)
                               gCCCcagccagtcgcccatatcttcaaagacgctt     >  1:4056725‑M2/1‑4 (MQ=255)
                               gCCCcagccagtcgcccatatcttcaaagacgctt     >  1:17324112‑M2/1‑4 (MQ=255)
                               cccccagccagtcgcccatatcttcaaagacgctt     >  1:16133215‑M2/2‑4 (MQ=255)
                                ccccagccagtcgcccatatcttcaaagacgcttc    >  1:2607843‑M2/1‑3 (MQ=255)
                                ccccACCCAGATCGAGCGCCATCAGAGGCAAACGc    <  1:12259846/35‑1 (MQ=255)
                                 cccagccagtcgcccatatcttcaaagacgcttct   >  1:11045371‑M2/1‑2 (MQ=255)
                                 cccagccagtcgcccatatcttcaaagacgcttct   >  1:6633266‑M2/1‑2 (MQ=255)
                                 cccagccagtcgcccatatcttcaaagacgcttct   >  1:9396718‑M2/1‑2 (MQ=255)
                                 cccAGCCAGATCGAGCGCCATCAGAGGCAAACGCt   >  1:3430818/1‑35 (MQ=255)
                                  ccagccagtcgcccatatcttcaaagacgcttctt  >  1:14590627‑M2/1‑1 (MQ=255)
                                  ccagccagtcgcccatatcttcaaagacgcttctt  >  1:16607884‑M2/1‑1 (MQ=255)
                                  ccagccagtcgcccatatcttcaaagacgcttctt  >  1:7309435‑M2/1‑1 (MQ=255)
                                  ccagccagtcgcccatatcttcaaagacgcttctt  >  1:1978645‑M2/1‑1 (MQ=255)
                                  ccagccagtcgcccatatcttcaaagacgcttctt  >  1:4635681‑M2/1‑1 (MQ=255)
                                  ccagccagATCGAGCGCCATCAGAGGCAAACGCtt  <  1:17036920/35‑1 (MQ=255)
                                  ccagccagATCGAGCGCCATCAGAGGCAAACGCtt  <  1:19467808/35‑1 (MQ=255)
                                  ccagccagATCGAGCGCCATCAGAGGCAAACGCtt  <  1:2884184/35‑1 (MQ=255)
                                  ccagccagATCGAGCGCCATCAGAGGCAAACGCtt  >  1:4202690/1‑35 (MQ=255)
                                  |                                  
AATCTTGAAGTGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGATCGAGCGCCATCAGAGGCAAACGCTT  >  REL606/3144203‑3144271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.