New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1054933 | 86 (0.840) | 11 (0.120) | 4/44 | NT | 9.8% | coding (103/1545 nt) | appC | cytochrome bd‑II oxidase, subunit I |
? | REL606 | = 3766502 | 123 (1.310) | coding (1206/1206 nt) | gltS | glutamate transporter |
Only 100 of 215 total aligned reads displayed.
AGCGTTTCCGGTTCCTTCCGACGCTTTTTCATTTTTAACCGGCAAAAATCGGCAACATTAAATACAGCT > REL606/3766468‑3766536 | aGCGTTTCCGGTTCCTTCCGACGCTTTTTCAtttt < 1:16644274/35‑1 (MQ=255) gCGTTTCCGGTTCCTTCCGACGCTTTTTCATTTTt < 1:9044338‑M2/35‑2 (MQ=255) gCGTTTCCGGTTCCTTCCGACGCTTTTTCATTTTt < 1:16745864‑M2/35‑2 (MQ=255) gCGTTTCCGGTTCCTTCCGACGCTTTTTCATTTTt < 1:3987933‑M2/35‑2 (MQ=255) gTTTCCGGTTCCTTCCGACGCTTTTTCATTTTTaa > 1:8876458/1‑35 (MQ=255) tttCCGGTTCCTTCCGACGCTTTTTCATTTTTAAc < 1:17425908/35‑1 (MQ=255) tttCCGGTTCCTTCCGACGCTTTTTCATTTTTAAc < 1:19461776/35‑1 (MQ=255) tttCCGGTTCCTTCCGACGCTTTTTCATTTTTAAc < 1:521381/35‑1 (MQ=255) tttCCGGTTCCTTCCGACGCTTTTTCATTTTTAAc < 1:9692027/35‑1 (MQ=255) tttCCGGTTCCTTCCGACGCTTTTTCATTTTTAAc < 1:10970421/35‑1 (MQ=255) ttCCGGTTCCTTCCGACGCTTTTTCATTTTTAAcc > 1:6850728/1‑35 (MQ=255) tCCGGTTCCTTCCGACGCTTTTTCATTTTTAACCg > 1:8424779/1‑35 (MQ=255) tCCGGTTCCTTCCGACGCTTTTTCATTTTTAACCg < 1:13582589/35‑1 (MQ=255) tCCGGTTCCTTCCGACGCTTTTTCATTTTTAACCg > 1:14091225/1‑35 (MQ=255) ccGGTTCCTTCCGACGCTTTTTCATTTTTAACAgg < 1:8249268/35‑1 (MQ=255) cGGTTCCTTCCGACGCTTTTTCATTTTTAACCGGc > 1:5496933/1‑35 (MQ=255) cGGTTCCTTCCGACGCTTTTTCATTTTTAACCGGc < 1:17798457/35‑1 (MQ=255) ggTTCCTTCCGACGCTTTTTCATTTTTNACAGGCa < 1:17895122/35‑1 (MQ=255) ggTTCCTTCCGACGCTTTTTCATTTTTAACCGGCa > 1:18194791/1‑35 (MQ=255) ggTTCCTTCCGACGCTTTTTCATTTTTAACCGGCa < 1:7137794/35‑1 (MQ=255) gTTCCTTCCGACGCTTTTTCATTTTTAACCGGCaa < 1:4641937/35‑1 (MQ=255) ttccttccGACGCTTTTTCATTTTTAACCGGCaaa > 1:13412031/1‑35 (MQ=255) ttccttccGACGCTTTTTCATTTTTAACCGGCaaa < 1:8327446/35‑1 (MQ=255) ttccttccGACGCTTTTTCATTTTTAACCGGCaaa < 1:11969692/35‑1 (MQ=255) tccttccGACGCTTTTTCATTTTTAACCGGCaaaa < 1:2159938/35‑1 (MQ=255) tccttccGACGCTTTTTCATTTTTAACCGGCaaaa > 1:1939334/1‑35 (MQ=255) tccttccGACGCTTTTTCATTTTTAACCGGCaaaa > 1:8113817/1‑35 (MQ=255) gccttccGACGCTTTTTCATTTTTAACCGGCaaaa < 1:14298/34‑1 (MQ=255) ccttccGACGCTTTTTCATTTTTAACCGGCaaaaa < 1:3190375/35‑1 (MQ=255) ccttccGACGCTTTTTCATTTTTAACCGGCaaaaa > 1:1666661/1‑35 (MQ=255) ttccGACGCTTTTTTATTTTTAACCGGCAAAAATc > 1:7946485/1‑35 (MQ=255) tccGACGCTTTTTCATTTTTAACCGGCAAAAATCg < 1:9431796/35‑1 (MQ=255) ccGACGCTTTTTCATTTTTAACCGGCAAAAATCgg < 1:3398239/35‑1 (MQ=255) ccGACGCTTTTTCATTTTTAACCGGCAAAAATCgg > 1:5052405/1‑35 (MQ=255) ccGACGCTTTTTCATTTTTAACCGGCAAAAATCgg < 1:11622319/35‑1 (MQ=255) ccGACGCTTTTTCATTTTTAAACGGCAAAAATCgg < 1:14402992/35‑1 (MQ=255) cGACGCTTTTTCATTTTTAACCGGCAAAAATCGGc > 1:14869366/1‑35 (MQ=255) cGACGCTTTTTCATTTTTAACCGGCAAAAATCGGc > 1:11288856/1‑35 (MQ=255) gACGCTTTTTCATTTTTAACCGGCAAAAATCGGCa > 1:10773265/1‑35 (MQ=255) aCGCTTTTTCATTTTTAACCGGCAAAAATCGGCaa > 1:20526698/1‑35 (MQ=255) aCGCTTTTTCATTTTTAACCGGCAAAAATCGGCaa > 1:4899778/1‑35 (MQ=255) aCGCTTTTTCATTTTTAACCGGCAAAAATCGGCaa > 1:4339600/1‑35 (MQ=255) aCGCTTTTTCATTTTTAACCGGCAAAAATCGGCaa < 1:18972435/35‑1 (MQ=255) cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc > 1:848871/1‑35 (MQ=255) cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc < 1:10649144/35‑1 (MQ=255) cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc > 1:19743942/1‑35 (MQ=255) cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc > 1:12302673/1‑35 (MQ=255) cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc < 1:17984868/35‑1 (MQ=255) cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc < 1:16116411/35‑1 (MQ=255) cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc < 1:3694663/35‑1 (MQ=255) gCTTTTTCATTTTTAACCGGCAAAAATCGGCAACa > 1:3853229/1‑35 (MQ=255) gCTTTTTCATTTTTAACCGGCAAAAATCGGCAACa < 1:18548223/35‑1 (MQ=255) gCTTTTTCATTTTTAACCGGCAAAAATCGGCAACa < 1:15040422/35‑1 (MQ=255) gCTTTTTCATTTTTAACCGGCAAAAATCGGCAACa > 1:655554/1‑35 (MQ=255) gCTTTTTCATTTTTAACCGGCAAAAATCGGCAACa > 1:11819189/1‑35 (MQ=255) ttttttcATTTTtagccagcaaaaaaatcagcccc > 1:1317822‑M2/2‑12 (MQ=255) cTTTTTCATTTTTAACCGGCAAAAATCGGCAACAt < 1:7737727/35‑1 (MQ=255) cTTTTTCATTTTTAACCGGCAAAAATCGGCAACAt > 1:2995267/1‑35 (MQ=255) cTTTTTCATTTTTAACCGGCAAAAATCGGCAACAt > 1:15316504/1‑35 (MQ=255) tttttCATTTTtagccagcaaaaaaatcagcccca > 1:6705855‑M2/1‑11 (MQ=255) tttttCATTTTTAACCGGCAAAAATCGGCAACAtt < 1:12245906/35‑1 (MQ=255) tttttCATTTTTAACCGGCAAAAATCGGCAACAtt < 1:9245450/35‑1 (MQ=255) gttttcAATTTtagccagcaaaaaaatcagcccca > 1:8033628‑M2/2‑11 (MQ=255) ttttCATTTTTAACCGGCAAAAATCGGCAACATTa < 1:12025210/35‑1 (MQ=255) ttttCATTTTTAACCGGCAAAAATCGGCAACATTa < 1:15059406/35‑1 (MQ=255) ttttCATTTTTAACCGGCAAAAATCGGCAACATTa > 1:18401391/1‑35 (MQ=255) ttttCATTTTTAACCGGCAAAAATCGGCAACATTa < 1:20072280/35‑1 (MQ=255) tttCATTTTTAACCGGCAAAAATCGGCAACATTaa > 1:2732384/1‑35 (MQ=255) tttCAATTTtagccagcaaaaaaatcagccccagg > 1:20311894‑M2/1‑9 (MQ=255) tttCAATTTtagccagcaaaaaaatcagccccagg > 1:16346057‑M2/1‑9 (MQ=255) ttCATTTTTAACCGGCAAAAATCGGCAACATTaaa > 1:1873816/1‑35 (MQ=255) ttCATTTTTAACCGGCAAAAATCGGCAACATTaaa > 1:19533287/1‑35 (MQ=255) ttCATTTTTAACCGGCAAAAATCGGCAACATTaaa > 1:2535881/1‑35 (MQ=255) ttCATTTTTAACCGGCAAAAATCGGCAAAATTaaa < 1:15462502/35‑1 (MQ=255) ttCATTATtagccagcaaaaaaatcagccccaggg > 1:15561178‑M2/1‑8 (MQ=255) ttCATTATtagccagcaaaaaaatcagccccaggg > 1:10422132‑M2/1‑8 (MQ=255) tCATTTTTAACCGGCAAAAATCGGCAACATTAAAt < 1:17026974/35‑1 (MQ=255) tCATTTTTAACCGGCAAAAATCGGCAACATTAAAt < 1:17275996/35‑1 (MQ=255) cATTTTTAACCGGCAAAAATCGGCAACATTAAATa < 1:7586967/35‑1 (MQ=255) tattttagccagcaaaaaaatcagccccagggtaa > 1:13794526‑M2/3‑5 (MQ=255) aTTTTTAACCGGCAAAAATCGGCAACATTAAATAc > 1:8302094/1‑35 (MQ=255) aTTTTTAACCGGCAAAAATCGGCAACATTAAATAc < 1:7995198/35‑1 (MQ=255) tttttAACCGGCAAAAATCGGCAACATTAAATACa > 1:6190707/1‑35 (MQ=255) tttttAACCGGCAAAAATCGGCAACATTAAATACa > 1:4420847/1‑35 (MQ=255) tttttAACCGGCAAAAATCGGCAACATTAAATACa < 1:10198634/35‑1 (MQ=255) ttttAACCGGCAAAAATCGGCAACATTAAATACAg < 1:8726660/35‑1 (MQ=255) ttttAACCGGCAAAAATCGGCAACATTAAATACAg > 1:9476755/1‑35 (MQ=255) ttttAACCGGCAAAAATCGGCAACATTAAATACAg > 1:16954147/1‑35 (MQ=255) ttttAACCGGCAAAAATCGGCAACATTAAATACAg < 1:5954604/35‑1 (MQ=255) ttttAACCGGCAAAAATCGGCAACATTAAATACAg > 1:17667055/1‑35 (MQ=255) ttttAACCGGCAAAAATCGGCAACATTAAATACAg < 1:14574271/35‑1 (MQ=255) tttAACCGGCAGAAATCGGCAACATTAAATACAGc > 1:7347856/1‑35 (MQ=255) tttAACCGGCAAAAATCGGCAACATTAAATACAGc < 1:16183205/35‑1 (MQ=255) tttAACCGGCAAAAATCGGCAACATTAAATACAGc < 1:15240904/35‑1 (MQ=255) tttAACCGGCAAAAATCGGCAACATTAAATACAGc > 1:5125007/1‑35 (MQ=255) tttAACCGGCAAAAATCGGCAACATTAAATACAGc < 1:13596990/35‑1 (MQ=255) ttagccagcaaaaaaatcagccccagggtaagggg > 1:10285532‑M2/1‑1 (MQ=255) ttAACCGGCAAAAATCGGCAACATTAAATACAGCt < 1:10858151/35‑1 (MQ=255) ttAACCGGCAAAAATCGGCAACATTAAATACAGCt < 1:15667516/35‑1 (MQ=255) ttAACCGGCAAAAATCGGCAACATTAAATACAGCt < 1:2482961/35‑1 (MQ=255) | AGCGTTTCCGGTTCCTTCCGACGCTTTTTCATTTTTAACCGGCAAAAATCGGCAACATTAAATACAGCT > REL606/3766468‑3766536 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |