New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 326204 =101 (0.980)10 (0.130) 4/36 NT 14.1% coding (849/1887 nt) prpE predicted propionyl‑CoA synthetase with ATPase domain
?REL606 = 4116137 46 (0.600)intergenic (+15/‑78) katG/yijE catalase/hydroperoxidase HPI(I)/predicted permease

Only 100 of 213 total aligned reads displayed.

AAGCGGGCGGTGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTGGGGCATTCGTATATCGTCTACGC  >  REL606/326170‑326239
                                  |                                   
ccgtttcgacctgctgtaatctgaccccgttcagc                                     >  1:4173189‑M1/35‑35 (MQ=255)
ccgtttcgacctgctgtaatctgaccccgttcagc                                     >  1:13861614‑M1/35‑35 (MQ=255)
ccgtttcgacctgctgtaatctgaccccgttcagc                                     >  1:17309337‑M1/35‑35 (MQ=255)
ccgtttcgacctgctgtaatctgaccccgttcagc                                     >  1:10384505‑M1/35‑35 (MQ=255)
aggcgggcggTGTGTTCTTTTGTGCTTCGGATATc                                     <  1:545851/33‑1 (MQ=255)
aaGCGGGCGGTGTGTTCTTTTGTGCTTCGGATATc                                     <  1:16956666/35‑1 (MQ=255)
aaGCGGGCGGTGTGTTCTTTTGTGCTTCGGATATc                                     >  1:19627923/1‑35 (MQ=255)
aaGCGGGCGGTGTGTTCTTTTGTGCTTCGGATATc                                     >  1:1486063/1‑35 (MQ=255)
 cgtttcgacctgctgtaatctgaccccgttcagCg                                    >  1:6229989‑M1/34‑35 (MQ=255)
 cgtttcgacctgctgtaatctgaccccgttcagCg                                    >  1:1232172‑M1/34‑35 (MQ=255)
 cgtttcgacctgctgtaatctgaccccgttcagCg                                    >  1:2298412‑M1/34‑35 (MQ=255)
 agagggcggTGTGTTCTTTTGTGCTTCGGATATCg                                    <  1:10535200/32‑1 (MQ=255)
 aGCGGGCGGTGTGTTCTTTTGTGCTTCGGATATCg                                    <  1:9576616/35‑1 (MQ=255)
 aGCGGGCGGTGTGTTCTTTTGTGCTTCGGATATCg                                    >  1:6904373/1‑35 (MQ=255)
 aGCGGGCGGTGTGTTCTTTTGTGCTTCGGATATCg                                    >  1:17661466/1‑35 (MQ=255)
  gtttcgacctgctgtaatctgaccccgttcagCgg                                   >  1:13955956‑M1/33‑35 (MQ=255)
  gtttcgacctgctgtaatctgaccccgttcagCgg                                   <  1:11041670‑M1/3‑1 (MQ=255)
  gtttcgacctgctgtaatctgaccccgttcagCgg                                   <  1:13272372‑M1/3‑1 (MQ=255)
  gtttcgacctgctgtaatctgaccccgctcagCgg                                   <  1:4960235‑M1/3‑1 (MQ=255)
  gcgggcggTGTGTTCTTTTGTGCTTCGGATTTCgg                                   <  1:752096/35‑1 (MQ=255)
  gcgggcggTGTGTTCTTTTGTGCTTCGGATATCgg                                   <  1:6718208/35‑1 (MQ=255)
  gcgggcggTGTGTTCTTTTGTGCTTCGGATATCgg                                   <  1:3654514/35‑1 (MQ=255)
  gcgggcggTGTGTTCTTTTGTGCTTCGGATATCgg                                   <  1:1108855/35‑1 (MQ=255)
   tttcgacctgctgtaatctgaccccgttcagCGGc                                  >  1:13663855‑M1/32‑35 (MQ=255)
   cgggcggTGTGTTCTTTTGTGCTTCGGATATCGGc                                  <  1:13551155/35‑1 (MQ=255)
    gggcgtTGTGTTCTTTTGTGCTTCGGATATCGGCt                                 >  1:10424999/1‑35 (MQ=255)
    gggcggTGTGTTCTTTTTTGCTTCGGATATTGGcc                                 >  1:15833029/1‑34 (MQ=37)
    gggcggTGTGTTCTTTTGTGCTTCGGATATCgggt                                 >  1:18358570/1‑33 (MQ=255)
    gggcggTGTGTTCTTTTGTGCTTCGGATATCGGCt                                 >  1:18804718/1‑35 (MQ=255)
    gggcggTGTGTTCTTTTGTGCTTCGGATATCGGCt                                 <  1:10646187/35‑1 (MQ=255)
    gggcggTGTGTTCTTTTGTGATTCGGATATCGGCt                                 <  1:19245021/35‑1 (MQ=255)
     tcgacctgctgtaatctgaccccgttcagCGGCTg                                >  1:8650427‑M1/30‑35 (MQ=255)
     ggcggTGTGTTCTTTTGTGCTTCGGATATCGGCTg                                <  1:19251401/35‑1 (MQ=255)
     ggcggTGTGTTCTTTTGTGCTTCGGATATCGGCTg                                <  1:2665115/35‑1 (MQ=255)
       gacctgctgtaatctgaccccgttcagCGGGTggg                              <  1:8882106‑M1/8‑1 (MQ=255)
       gacctgctgtaatctgaccccgttcagCGGCTggg                              <  1:7143198‑M1/8‑1 (MQ=255)
       cggTGTGTTCTTTTGTGCTTCGGATATCGGCTggg                              >  1:11587789/1‑35 (MQ=255)
       cggTGTGTTCTTTTGTGCTTCGGATATCGGCTggg                              >  1:12792187/1‑35 (MQ=255)
        ggTGTGTTCTTTTGTGCTTCGGATATCGGCTgggg                             >  1:8307466/1‑34 (MQ=255)
        ggTGTGTTCTTTTGTGCTTCGGATATCGGCTgggg                             >  1:15866701/1‑34 (MQ=255)
        ggTGTGTTCTTTTGTGCTTCGGATATCGGCTgggg                             >  1:10215012/1‑34 (MQ=255)
        ggTGTGTTCTTTTGTGCTTCGGATATCGGCTGggt                             <  1:15590060/35‑1 (MQ=255)
         gtgtgtTCTTTTGTGCTTCGGATATCGGCTGggtg                            <  1:16798312/35‑1 (MQ=255)
         gtgtgtTCTTTTGTGCTTCGGATATCGGCTGggtg                            <  1:13057429/35‑1 (MQ=255)
         cctgctgtaatctgaccccgttcagCGGCTGggtg                            <  1:12151299‑M1/10‑1 (MQ=255)
          tgtgtTCTTTTGTGCTTCGGATATCGGCTGggtgg                           <  1:18557962/35‑1 (MQ=255)
          tgtgtTCTTTTGTGCTTCGGATATCGGCTGggggg                           >  1:3949410/1‑35 (MQ=255)
          tgtgtTCTTTTGTGCTTCGGATATCGGCTGggggg                           >  1:146021/1‑35 (MQ=255)
          tgtgtTCTTTTGTGCTTCGGATATCGGCTGggggg                           >  1:5056107/1‑35 (MQ=255)
          ctgctgtaatctgaccccgttcagCGGCTGggtgg                           <  1:16241669‑M1/11‑1 (MQ=255)
          ctgctgtaatctgaccccgttcagCGGCTGggtgg                           <  1:10113398‑M1/11‑1 (MQ=255)
           tgctgtaatctgaccccgttcagCGGCTGggtggt                          <  1:5690320‑M1/12‑1 (MQ=255)
           gtgtTCTTTTGTGCTTCGGATATCGGCTGggtggt                          <  1:6612041/35‑1 (MQ=255)
           gtgtTCTTTTGTGCTTCGGATATCGGCTGggtggt                          <  1:10076864/35‑1 (MQ=255)
           gtgtTCTTTTGTGCTTCGGATATCGGCTGggtggt                          <  1:14694155/35‑1 (MQ=255)
           gtgtTCTTTTGTGCTTCGGATATCGGCTGgggggg                          >  1:1521357/1‑34 (MQ=255)
            tgtTCTTTTGTGCTTCGGATATCGGCTGggggggg                         >  1:4606953/1‑33 (MQ=38)
            tgtTCTTTTGTGCTTCGGATATCGGCTGGgtggtg                         <  1:3258629/35‑1 (MQ=255)
            gctgtaatctgaccccgttcagCGGCTGGggggtg                         <  1:13349467‑M1/13‑1 (MQ=255)
             gtTCTTTTGTGCTTCGGATATCGGCTGGGtggtgg                        <  1:7285575/35‑1 (MQ=255)
             gtTCTTTTGTGCTTCGGATATCGGCTGGGgggggg                        >  1:3005147/1‑35 (MQ=38)
             gtTCTTTTGTGCTTCGGATATCGGCTGGGgggggg                        >  1:12462708/1‑35 (MQ=38)
             gtTCTTTTGTGCTTCGGATATCGGCTGGGgggggg                        >  1:16602058/1‑35 (MQ=38)
             ctgtaatctgaccccgttcagCGGctgggtggcgg                        <  1:10739194‑M1/14‑4 (MQ=255)
              ttCTTTTGTGCTTCGGATATCGGCTGGGGGGGggg                       >  1:10875157/1‑35 (MQ=38)
              ttCTTTTGTGCTTCGGATATCGGCTGGGGGGGggg                       >  1:12724014/1‑35 (MQ=38)
              ttCTTTTGTGCTTCGGATATCGGCTGGGGGGGggg                       >  1:9318540/1‑35 (MQ=38)
              tgtaatctgaccccgttcagCGGCTGGgtggtggt                       <  1:16142710‑M1/15‑2 (MQ=255)
                taatctgaccccgttcagCGGCTgggtggtggcgg                     <  1:13330638‑M1/17‑4 (MQ=255)
                taatctgaccccgttcagCGGCTGGGTGgtgggag                     <  1:11989631‑M1/17‑3 (MQ=255)
                cTTTTGTGCTTCGGATATCGGCTGGGGGGGggggg                     >  1:12636069/1‑34 (MQ=255)
                cTTTTGTGCTTCGGATATCGGCTGGGGGGGggggg                     >  1:8263419/1‑34 (MQ=255)
                 ttttGTGCTTCGGATATCGGCTGGGGGGGgggggg                    >  1:6302782/1‑33 (MQ=255)
                  tttGTGCTTCGGATATCGGCTGGGTGGTGGGGCAt                   <  1:5817071/35‑1 (MQ=255)
                  tttGTGCTTCGGATATCGGCTGGGGGGGggggggg                   >  1:12895886/1‑32 (MQ=255)
                  tttGTGCTTCGGATATCGGCTGGGGGGGggggggg                   >  1:9666895/1‑32 (MQ=255)
                  atctgaccccgttcagCGGCTGGGTggtggggggg                   <  1:19657853‑M1/19‑4 (MQ=255)
                     gtgCTTCGGATATCGGCTGGGTGGTGGGGCATTCg                <  1:17877911/35‑1 (MQ=255)
                     gtgCTTCGGATATCGGCTGGGTGGTGGGGCATTCg                <  1:20293835/35‑1 (MQ=255)
                     gtgCTTCGGATATCGGCTGGGTGGTGGGGCATTCg                <  1:14398574/35‑1 (MQ=255)
                      tgattCGGATATCGGCTGGGTGGTGGGGCATTCGt               <  1:14746787/32‑1 (MQ=255)
                       gCTTCGGATATCGGCTGGGTGGTGGGGCATTCGta              <  1:2930238/35‑1 (MQ=255)
                       gCTTCGGATATCGGCTGGGTGGTGGGGCATTCGta              <  1:15407410/35‑1 (MQ=255)
                        cTTCGGATATCGGCTGGGTGGTGGGGCATTCGtat             <  1:16394061/35‑1 (MQ=255)
                           cGGATATCGGCTGGGTGGTGGGGCATTCGTATATc          <  1:2373380/35‑1 (MQ=255)
                           cGGATATCGGCTGGGTGGTGGGGCATTCGTATATc          <  1:4273066/35‑1 (MQ=255)
                           cGGATATCGGCTGGGGGGGGGGGGGCTCGTCTATc          >  1:15086419/1‑35 (MQ=255)
                            ggATATCGGCTGGGTGGTGGGGCATTCGTATATCg         <  1:19313775/35‑1 (MQ=255)
                            ggATATCGGCTGGGTGGTGGGGCATTCGTATATCg         <  1:7917929/35‑1 (MQ=255)
                            ggATATCGGCTGGGTGGTGGGGCATTCGTATATCg         <  1:11509330/35‑1 (MQ=255)
                             gATATCGGCTGGGTGGTGGGGCATTCGTATATCGt        <  1:11477961/35‑1 (MQ=255)
                             gATATCGGCTGGGTGGTGGGGCATTCGTATATCGt        <  1:2737391/35‑1 (MQ=255)
                              atatCGGCTGGGTGGGGGGGCATTCGTATATCGTc       <  1:19583684/35‑1 (MQ=255)
                              atatAGGCTGGGTGGTGGGGCATTCGTATATCGTc       <  1:17821980/35‑1 (MQ=255)
                               tatCGGCTGGGTGGTGGGGCATTCGTATATCGTCt      <  1:6736435/35‑1 (MQ=255)
                               tatCGGCTGGGTGGTGGGGCATTCGTATATCGTCt      <  1:6055899/35‑1 (MQ=255)
                               tatCGGCTGGGGGGGGGGGGGGTCGTATATTGttt      >  1:11229296/1‑33 (MQ=255)
                                atCGGCTGGGTGGTGGGGCATTCGTATATCGTCTa     <  1:20123649/35‑1 (MQ=255)
                                  cGGCTGGGTGGGGGGCATTCGTATATCGTCTAcgc  <  1:5594053/35‑1 (MQ=38)
                                  CGGCTGGGTGGTGGGGCATTCGTATATCGTCTAcg   >  1:16733429‑M1/1‑35 (MQ=255)
                                  |                                   
AAGCGGGCGGTGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTGGGGCATTCGTATATCGTCTACGC  >  REL606/326170‑326239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.