New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2312280 = | 75 (0.730) | 5 (0.050) | 3/44 | NT | 9.1% | intergenic (‑147/‑143) | ais/yfbE | hypothetical protein/uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
? | REL606 | = 4042610 | 31 (0.330) | intergenic (‑57/+10) | yshA/yihO | predicted outer membrane porin L/predited transporter |
GGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAGCCGTTTTT > REL606/4042576‑4042644 | gggAGGCCGCCACCCACCAGGATGGAAATAGCGGc > 1:17137763/1‑35 (MQ=255) gggAGGCCGCCACACACCAGGATGGAAATAGCGGc < 1:15088418/35‑1 (MQ=255) ggAGGCCGCCACCCACCAGGATGGAAATAGCGGCt < 1:7491178‑M2/35‑2 (MQ=255) ggAGGCCGCCACCCACCAGGATGGAAATAGCGGCt > 1:6664507‑M2/1‑34 (MQ=255) ggAGGCCGCCACCCACCAGGATGGAAATAGCGGCt < 1:19414125‑M2/35‑2 (MQ=255) ggAGGCCGCCACCCACCAGGATGGAAATAGCGGCt > 1:14129374‑M2/1‑34 (MQ=255) gATGCCGCCACCCACCAGGATGGAAATAGCGGCta < 1:3986566‑M2/35‑3 (MQ=255) gAGGCCGCCACCCACCAGTATGGAAATAGCGGCta < 1:4657701‑M2/35‑3 (MQ=255) gAGGCCGCCACCCACCAGGATGGAAATAGCGGCta > 1:8122389‑M2/1‑33 (MQ=255) gAGGCCGCCACCCACCAGGATGGAAATAGCGGCta < 1:772473‑M2/35‑3 (MQ=255) gAGGCCGCCACCCACCAGGATGGAAATAGCGGCta < 1:17172086‑M2/35‑3 (MQ=255) gAGCCCGCCACCCACCAGGATGGAAATAGCGGCta > 1:3580627‑M2/1‑33 (MQ=255) aGGCCGCCACCCACCAGGATGGAAATAGCGGCtaa < 1:9857231‑M2/35‑4 (MQ=255) aGGCCGCCACCCACCAGGATGGAAATAGCGGCtaa < 1:15372953‑M2/35‑4 (MQ=255) aGGCCGCCACCCACCAGGATGGAAATAGCGGCtaa < 1:13918176‑M2/35‑4 (MQ=255) aGGCCGCCACCCACCAGGATGGAAATAGCGGCTAt < 1:5575313/35‑1 (MQ=255) ggCCGCCACCCACCAGGATGGAAATAGCGGCtaaa < 1:1902604‑M2/35‑5 (MQ=255) ggCCGCCACCCACCAGGATGGAAATAGCGGCtaaa < 1:14195482‑M2/35‑5 (MQ=255) gccgccACCCACCAGGATGGAAATAGCGGCTATTg < 1:9801432/35‑1 (MQ=255) cgccCCCCACCAGGATGGAAATAGCGGCTATTGAc < 1:8736454/35‑1 (MQ=255) cgccCCCCACCAGGATGGAAATAGCGGCTATTGAc < 1:10880030/35‑1 (MQ=255) cgccACCCACCAGGATGGAAATAGCGGCTATTGAc < 1:5640102/35‑1 (MQ=255) gccCCCCACCAGGATGGAAATAGCGGCTATTGACa < 1:1016252/35‑1 (MQ=255) ccacccacCAGGATGGAAATAGCGGCtaaaaaaaa < 1:13869675‑M2/35‑10 (MQ=255) ccccccccAGGAGGGAAATAGCGGCTATTGACAtt < 1:15616415/33‑1 (MQ=37) caccccccAGGAGGGAAATAGCGGCTATTGACAtt < 1:13783359/35‑1 (MQ=38) cacccaccAGGATGGAAATAGCGGCtaaaaaaaaa < 1:17227563‑M2/35‑11 (MQ=255) cacccaccAGGATGGAAATAGCGGCtaaaaaaaaa < 1:7749188‑M2/35‑11 (MQ=255) cacccaccAGGATGGAAATAGCGGCTATTGACAtt < 1:20306310/35‑1 (MQ=255) acccaccAGGATGGAAATAGCGGCtaaaaaaaaaa < 1:8886485‑M2/35‑12 (MQ=255) acccaccAGGATGGAAATAGCGGCTATTGACAttt < 1:12609566/35‑1 (MQ=255) acccaccAGGATGGAAATAGCGGCTATTGACAttt < 1:2712505/35‑1 (MQ=255) acacaccaGGATGGAAATAGCGGCTATTGACAttt < 1:13387022/32‑1 (MQ=255) ccaccaGGATGGAAATAGCGGCTATTGACATTtat < 1:10016120/35‑1 (MQ=255) ccaccaGGATGGAAATAGCGGCTATTGACATTtat < 1:16082600/35‑1 (MQ=255) ccaccaGGATGGAAATAGCGGCTATTGACATTtat < 1:1743319/35‑1 (MQ=255) ccaccaGGATGGAAATAGCGGCTATTGACATTtat < 1:12157127/35‑1 (MQ=255) caccaGGAGGGAAATAGCGGCTATTGACATTtata < 1:1138031/35‑1 (MQ=255) accaGGATGGAAATAGCGGCTATTGACATTTATaa < 1:3672691/35‑1 (MQ=255) aGGATGGAAATAGCGGCtaaaaaaaaatataaaaa < 1:2680590‑M2/35‑19 (MQ=255) aGGATGGAAATAGCGGCTATTGACATTTATAACGt < 1:18964838/35‑1 (MQ=255) aGGATGGAAATAGCGGCTATTGACATTTATAACGt < 1:11906705/35‑1 (MQ=255) ttGGAATTAGCGGCTATTGACATTTATAACGTTAc < 1:4413014/34‑1 (MQ=255) aTGGAAATAGCGTCTATTGACATTTATAACGTTAc > 1:19838540/1‑35 (MQ=255) aTGGAAATAGCGGCTATTGACATTTATAACGTTAc < 1:17488342/35‑1 (MQ=255) tGGAAATAGCGGCTATTGACATTTATAACGTTACg < 1:6904458/35‑1 (MQ=255) gAAATAGCGGCTATTGACATTTATAACGTTACGGa < 1:2830170/35‑1 (MQ=255) gAAATAGCGGCTATTGACATTTATAACGTTACGGa < 1:15291800/35‑1 (MQ=255) gAAATAGCGGCTATTGACATTTATAACGTTACGGa < 1:5089339/35‑1 (MQ=255) aaaTAGCGGCTATTGACATTTATAACGTTACGGaa < 1:9115151/35‑1 (MQ=255) aTAGCTGCTATTGACATTTATAACGTTACGGAAgg > 1:4079124/1‑34 (MQ=255) aTAGCGGCTATTGACATTTATAACGTTACGGAAGc < 1:18956296/35‑1 (MQ=255) aTAGCGGCTATTGACATTTATAACGTTACGGAAGc < 1:3800737/35‑1 (MQ=255) aTAGCGGCTATTGACATTTATAACGTTACGGAAGc < 1:7686251/35‑1 (MQ=255) tAGCGGCTATTGACATTTATAACGTTACGGAAGcc < 1:13629523/35‑1 (MQ=255) tAGCGGCTATTGACATTTATAACGTTACGGAAGcc < 1:17842310/35‑1 (MQ=255) tAGCGGCTATTGACATTTATAACGTTACGGAAGcc < 1:9628691/35‑1 (MQ=255) aGCGGCTATTGACATTTATAACGTTACGGAAGCCg < 1:17293062/35‑1 (MQ=255) cgtcTATTGACATTTATAACGTTACGGAAGGCGtt > 1:9846369/4‑35 (MQ=37) ggCTATTGACATTTATAAAGTTACGGAAGCCGttt < 1:7473350/35‑1 (MQ=255) gCTATTGACATTTATAACGTTACGGAAGGCGcttt > 1:15054750/1‑35 (MQ=37) gCTATTGACATTTATAACGTTACGGAAGCCGtttt > 1:3036839/1‑35 (MQ=255) gCTATTGACATTTATAACGTTACGGAAGCCGgttt > 1:12393060/1‑35 (MQ=255) cTATTGACATTTATAACGTTACGGAAGCCGttttt > 1:18707881/1‑35 (MQ=255) | GGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAGCCGTTTTT > REL606/4042576‑4042644 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |