Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,990 IS150 (+) +3 bp 100% intergenic (‑32/‑496) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16990 =0 (0.000)81 (0.790) 38/48 NT 100% intergenic (‑32/‑498) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 590471 NA (NA)noncoding (1977/1977 nt) IS150 repeat region
* ? REL606 = 169920 (0.000)58 (0.560) 29/48 NT 100% intergenic (‑34/‑496) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region

ATAGGGGGCCTCGGGTTGATAGTAAAATATCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/16959‑16992
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAA  <  REL606/2775877‑2775848
                                                                
ATAGGGGGCCTCGGGTTGATAGTAAAATATCACTT                               >  1:7323851/1‑35
 TAGGGGGCCTCGGGTTGATAGTAAAATATCACTTG                              >  1:8961776/1‑35
 TAGGGGGCCTCGGGTTGATAGTAAAATATCACTTG                              <  1:4147269/35‑1
  AGGGGGCCTCGTGTTGATAGTAAAATATCACTTGT                             >  1:14426984/1‑35
  AGGGGGCCTCGGGTTGATAGTAAAATATCACTTGT                             >  1:17930161/1‑35
  AGGGGGCCTCGGGTTGATAGTAAAATATCACTTGT                             >  1:5052183/1‑35
   GGGGGCCTCGGGTTGATAGTAAAATATCACTTGTA                            <  1:11542302/35‑1
     GGGCCTCGGGTTGATAGTAAAATATCACTTGTACT                          <  1:17983665/35‑1
     GGGCCTCGGGTTGATAGTAAAATATCACTTGTACT                          <  1:4432378/35‑1
     GGGCCTCGGGTTGATAGTAAAATATCACTTGTACT                          >  1:5993962/1‑35
     GGGCCTCGGGTTGATAGTAAAATATCACTTGTACT                          >  1:6552350/1‑35
     GGGCCTCGGGTTGATAGTAAAATATCACTTGTACT                          >  1:8353596/1‑35
     GGGCCTCGGGTTGATAGTAAAATATCACTTGTACT                          >  1:9969976/1‑35
      GGCCTCGGGTTGATAGTAAAATATCACTTGTACTG                         <  1:3828421/35‑1
      GGCCTCGGGTTGATAGTAAAATATCACTTGTACTG                         >  1:15055666/1‑35
      GGCCTCGGGTTGATAGTAAAATATCACTTGTACTG                         >  1:17143979/1‑35
         cgCGGGTTGATAGTAAAATATCACTTGTACTGCAC                      <  1:17364000/33‑1
         CTCGGGTTGATAGTAAAATATCACTTGTACTGCAC                      <  1:14841937/35‑1
         CTCGGGTTGATAGTAAAATATCACTTGTACTGCAC                      <  1:15139544/35‑1
           CGGGTTGATAGTAAAATATCACTTGTACTGCACCC                    >  1:15724519/1‑35
            GGGTTGATAGTAAAATATCACTTGTACTGCACCCA                   >  1:11209783/1‑35
            GGGTTGATAGTAAAATATCACTTGTACTGCACCCA                   <  1:8074118/35‑1
             GGTTGATAGTAAAATATCACTTGTACTGCACCCAT                  >  1:11426101/1‑35
               TTGATAGTAAAATATCACTTGTACTGCACCCATTT                <  1:6041729/35‑1
               TTGATAGTAAAATATCACTTGTACTGCACCCATTT                >  1:19606351/1‑35
               TTGATAGTAAAATATCACTTGTACTGCACCCATTT                <  1:18534574/35‑1
               TTGATAGTAAAATATCACTTGTACTGCACCCATTT                <  1:15901115/35‑1
               TTGATAGTAAAATATCACTTGTACTGCACCCATTT                <  1:13620988/35‑1
                TGATAGTAAAATATCACTTGTACTGCACCCATTTT               <  1:6690504/35‑1
                TGATAGTAAAATATCACTTGTACTGCACCCATTTT               <  1:1876136/35‑1
                 GATAGTAAAATATCACTTGTACTGCACCCATTTTG              >  1:8644247/1‑35
                  ATAGTAAAATATCACTTGTACTGCACCCATTTTGT             <  1:8605442/35‑1
                  ATAGTAAAATATCACTTGTACTGCACCCATTTTGT             <  1:11238373/35‑1
                  ATAGTAAAATATCACTTGTACTGCACCCATTTTGT             <  1:11299600/35‑1
                    AGTAAAATATCACTTGTACTGCACCCATTTTGTTt           >  1:11670229/1‑34
                    AGTAAAATATCACTTGTACTGCACCCATTTTGTTG           >  1:8671/1‑35
                    AGTAAAATATCACTTGTACTGCACCCATTTTGTTG           >  1:9766008/1‑35
                    AGTAAAATATCACTTGTACTGCACCCATTTTGTTG           >  1:17978715/1‑35
                     GTAAAATATCACTTGTACTGCACCCATTTTGTTGG          >  1:18476787/1‑35
                     GTAAAATATCACTTGTAATGCACCCATTTTGTTGG          <  1:1045786/35‑1
                      TAAAATATCACTTGTACTGCACCCATTTTGTTGGA         >  1:963334/1‑35
                      TAAAATATCACTTGTACTGCACCCATTTTGTTGGA         >  1:8021345/1‑35
                      TAAAATATCACTTGTACTGCACCCATTTTGTTGGA         <  1:5790305/35‑1
                       AAAATATCACTTGTACTGCACCCATTTTGTTGGAC        >  1:8669952/1‑35
                       AAAATATCACTTGTACTGCACCCATTTTGTTGGAC        <  1:16589599/35‑1
                       AAAATATCACTTGTACTGCACCCATTTTGTTGGAC        >  1:10467269/1‑35
                       AAAATATCACTTGTACTGCACCCATTTTGTTGGAC        >  1:16079460/1‑35
                       AAAATATCACTTGTACTGCACCCATTTTGTTGGAC        <  1:277032/35‑1
                        AAATATCACTTGTACTGCACCCATTTTGTTGGACG       >  1:9355197/1‑35
                        AAATATCACTTGTACTGCACCCATTTTGTTGGACG       >  1:6968977/1‑35
                        AAATATCACTTGTACTGCACCCATTTTGTTGGACG       <  1:1979318/35‑1
                        AAATATCACTTGTACTGCACCCATTTTGTTGGACG       >  1:14005015/1‑35
                        AAATATCACTTGTACTGCACCCATTTTGTTGGACG       <  1:11176700/35‑1
                        AAATATCACTTGTACTGCACCCATTTTGTTGGACG       >  1:4028777/1‑35
                        AAATATCACTTGTACTGCACCCATTTTGTTGGACG       >  1:8608878/1‑35
                        AAATATCACTTGTACTGCACCCATTTTGTTGGACG       >  1:17462557/1‑35
                         AATATCACTTGTACTGCACCCATTTTGTTGGACGA      <  1:9186861/35‑1
                         AATATCACTTGTACTGCACCCATTTTGTTGGACGA      >  1:1482931/1‑35
                          ATATCACTTGTACTGCACCCATTTTGTTGGACaga     >  1:17463347/1‑32
                          ATATCACTTGTACTGCACCCATTTTGTTGGACGAT     <  1:5154771/35‑1
                           TATCACTTGTACTGCACCCATTTTGTTGGACGATG    <  1:14774894/35‑1
                            ATCACTTGTACTGCACCCATTTTGTTGGACGATGA   <  1:11205532/35‑1
                            ATCACTTGTACTGCACCCATTTTGTTGGACGATGA   <  1:11645009/35‑1
                            ATCACTTGTACTGCACCCATTTTGTTGGACGATGA   <  1:5610025/35‑1
                            ATCACTTGTACTGCACCCATTTTGTTGGACGATGA   >  1:3006609/1‑35
                             TCACTTGTACTGCACCCATTTTGTTGGACGATGAA  <  1:8871152/35‑1
                             TCACTTGTACTGCACCCATTTTGTTGGACGATGAA  >  1:3430756/1‑35
                             TCACTTGTACTGCACCCATTTTGTTGGACGATGAA  >  1:10125823/1‑35
                                                                
ATAGGGGGCCTCGGGTTGATAGTAAAATATCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/16959‑16992
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAA  <  REL606/2775877‑2775848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.