New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1183967 | 102 (0.990) | 15 (0.150) | 4/46 | NT | 15.2% | intergenic (+43/+40) | ycfR/ycfS | hypothetical protein/hypothetical protein |
? | REL606 | = 4549416 | 69 (0.700) | coding (18/1233 nt) | yjiO | multidrug efflux system protein |
CCTCATTAATGCCTGCTACTGCTGATTTTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1183933‑1183967 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCCGCCATGCCGCCACGCTGTTTTTCCCGATGGCG < REL606/4549416‑4549383 ctTCATTAATGCCTGCTACTGCTGATTTTTTCCCC < 1:14463684/33‑1 CCTCATTAATGCCTGCTACTGCTGATTTTTTCCCC < 1:7340627/35‑1 CCTCATTAATGCCTGCTACTGCTGATTTTTTCCCC < 1:14767608/35‑1 CCTCATTAATGCCTGCTACTGCTGATTTTTTCCCC > 1:13658258/1‑35 CCTCATTAATGCCTGCTACTGCTGATTTTTTCCCC < 1:12046307/35‑1 CCTCATTAATGCCTGCTACTGCTGATTTTTTCCCC > 1:11554786/1‑35 CCTCATTAATGCCTGCTACTGCTGATTTTTTCCCC > 1:11333471/1‑35 tttTTTTTTCCCCCCGCCATGCCGCCACGCTGTTT < 1:12292925/32‑1 gcTTTTTTCCCCCCGCCATGCCGCCACGCTGTTTT < 1:1760127/33‑1 TTTTTTTCCCCCGCCATGCCGCCACGCTGTTTTTC < 1:6746825/35‑1 TTTTTTTCCCCCGCCATGCCGCCACGCTGTTTTTC < 1:15658226/35‑1 TTTTTTCCCCCCGCCATGCCGCCACGCTGTTTTTC < 1:1288440/35‑1 TTTTTTCCCCCCGCCATGCCGCCACGCTGTTTTTC < 1:8198188/35‑1 TTTTTTCCCCCGCCATGCCGCCACGCTGTTTTTCC < 1:17518976/35‑1 TTTTTCCCCCCGCCATGCCGCCACGCTGTTTTTCC < 1:2945115/35‑1 TTTTTCCCCCGCCATGCCGCCACGCTGTTTTTCCC < 1:18549360/35‑1 TTTTTCCCCCGCCATGCCGCCACGCTGTTTTTCCC < 1:12979548/35‑1 TTTTTCCCCCGCCATGCCGCCACGCTGTTTTTCCC < 1:16269/35‑1 TTTTTCCCCCGCCATGCCGCCACGCTGTTTTTCCC < 1:16185623/35‑1 TTTTCCCCCCGCCATGCCGCCACGCTGTTTTTCCC < 1:4589606/35‑1 TTTTCCCCCGCCATGCCGCCACGCTGTTTTTCCCG < 1:11305994/35‑1 TTTTCCCCCGCCATGCCGCCACGCTGTTTTTCCCG < 1:12370689/35‑1 tttCCCCCGCCATGCCGCCACGCTGTTTTTCCCGA < 1:7759203/32‑1 tttCCCCCGCCATGCCGCCACGCTGTTTTTCCCGA < 1:9421530/32‑1 TTCCCCCCGCCATGCCGCAACGCTGTTTTTCCCGA < 1:9448927/35‑1 TCCCCCCGCCATGCCGCCACGCTGTTTTTCCCGAT < 1:2734175/35‑1 TCCCCCCGCCATGCCGCCACGCTGTTTTTCCCGAT < 1:11239219/35‑1 TCCCCCCGCCATGCCGCCACGCTGTTTTTCCCGAT < 1:11840345/35‑1 CCCCCGCCATGCCGCCACGCTGTTTTTCCCGATGG < 1:20451367/35‑1 CCCCCGCCATGCCGCCACGCTGTTTTTCCCGATGG < 1:13132157/35‑1 CCCCCCCCATGCCGCCACGCTGTTTTTCCCGATGG < 1:10621928/35‑1 CCCCGCCATGCCGCCACGCTGTTTTTCCCGATGGC < 1:8090966/35‑1 CCCCGCCATGCCGCCACGCTGTTTTTCCCGATGGC < 1:12102784/35‑1 CCCGCCATGCCGCCACGCTGTTTTTCCCGATGGCG > 1:15102925/1‑35 CCCGCCATGCCGCCACGCTGTTTTTCCCGATGGCG > 1:14222808/1‑35 CCTCATTAATGCCTGCTACTGCTGATTTTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1183933‑1183967 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCCGCCATGCCGCCACGCTGTTTTTCCCGATGGCG < REL606/4549416‑4549383 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |