New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2283386 =61 (0.590)10 (0.110) 3/44 NT 11.2% intergenic (‑42/+107) yfaA/gyrA hypothetical protein/DNA gyrase subunit A
?REL606 2645822 = 102 (1.080)coding (151/273 nt) yfiM hypothetical protein

Only 100 of 118 total aligned reads displayed.

TTCCTTGTGTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAG  >  REL606/2283352‑2283420
                                  |                                  
ttCTTTTTGTATAGCCAGCCATTTTTTACGGGcac                                    <  1:19912648/35‑1 (MQ=37)
ttCTTTGTGTATAGCCAGCCATTTTTTACGGGcac                                    <  1:1359139/35‑1 (MQ=255)
ttCCTTGTGTATAGCCAGCCATTTTTTACGGGcac                                    >  1:11883635/1‑35 (MQ=255)
cggggcggctatcccaaagctcttttgacgccccc                                    >  1:6395116‑M1/35‑35 (MQ=255)
 tCCTTGTGTATAGCCAGCCATTTTTTACGGGcaca                                   >  1:15334203/1‑35 (MQ=255)
 ggggcggctatcccaaagctcttttgacgccccCa                                   >  1:10501013‑M1/34‑35 (MQ=255)
  ccTTGTTTATAGCCAGCCATTTTTTACGGGCACAg                                  <  1:10425888/35‑1 (MQ=255)
  ccTTGTGTATAGCCAGCCATTTTTTACGGGCACAg                                  >  1:17329554/1‑35 (MQ=255)
   tttGTTTTTACCCAGCCATTTTTTACGGGCACAGc                                 <  1:4721904/34‑1 (MQ=17)
   tttGTTTATAGCCAGCCATTTTTTACGGGCACAGc                                 <  1:9239273/34‑1 (MQ=255)
   cTTGTGTATAGCCAGCCATTTTTTACGGGCACAGc                                 >  1:16471330/1‑35 (MQ=255)
    ttGTGTATAGCCAGCCATTTTTTACGGGCACAGcc                                >  1:4394719/1‑35 (MQ=255)
    ttGTGTATAGCCAGCCATTTTTTACGGGCACAGcc                                >  1:9173674/1‑35 (MQ=255)
     tgtgTATAGCCAGCCATTTTTTACGGGCACAGCCa                               >  1:18235569/1‑35 (MQ=255)
      gtgtATAGCCAGCCATTTTTTACGGGCACAGCCaa                              >  1:14301288/1‑35 (MQ=255)
      gtgtATAGCCAGCCATTTTTTACGGGCACAGCCaa                              >  1:6294309/1‑35 (MQ=255)
      gtgtATAGCCAGCCATTTTTTACGGGCACAGCCaa                              >  1:15756849/1‑35 (MQ=255)
       tgtATAGCCAGCCATTTTTTACGGGCACAGCCaaa                             >  1:2729953/1‑35 (MQ=255)
       tgtATAGCCAGCCATTTTTTACGGGCACAGCCaaa                             >  1:4798575/1‑35 (MQ=255)
        gtATAGCCAGCCATTTTTTACGGGCACAGCCAAAc                            >  1:12260308/1‑35 (MQ=255)
          ataGCCAGCCATTTTTTACGGGCACAGCCAAACtt                          >  1:16936071/1‑35 (MQ=255)
          ataGCCAGCCATTTTTTACGGGCACAGCCAAACtt                          >  1:16899894/1‑35 (MQ=255)
           taGCCAGCCATTTTTTACGGGCACAGCCAAACttt                         >  1:17355093/1‑35 (MQ=255)
           taGCCAGCCATTTTTTACGGGCACAGCCAAACttt                         >  1:7628256/1‑35 (MQ=255)
            agccagccATTTTTTACGGGCACAGCCAAACTTTa                        >  1:2125380/1‑35 (MQ=255)
            agccagccATTTTTTACGGGCACAGCCAAACTTTa                        >  1:8457969/1‑35 (MQ=255)
             gccagccaTTTTTTACGGGCACAGCCAAACTTTAc                       >  1:20075944/1‑35 (MQ=255)
             gccagccaTTTTTTACGGGCACAGCCAAACTTTAc                       >  1:4212136/1‑35 (MQ=255)
              ccagccaTTTTTTACGGGCACAGCCAAACTTTAcc                      >  1:6741419/1‑35 (MQ=255)
              ccagccaTTTTTTACGGGCACAGCCAAACTTTAcc                      >  1:1898080/1‑35 (MQ=255)
                agccaTTTTTTACGGGCACAGCCAAACTTTACCGt                    >  1:6165953/1‑35 (MQ=255)
                agccaTTTTTTACGGGCACAGCCAAACTTTACCGt                    >  1:12981176/1‑35 (MQ=255)
                aaccaTTTTTTACGGGCACATACAAACTTTACCGt                    <  1:11580788/33‑1 (MQ=37)
                 gccaTTTTTTACGGGCACAGCCAAACTTTACCGTg                   >  1:5879587/1‑35 (MQ=255)
                 gccaTTTTTTACGGGCACAGCCAAACTTTACCGTg                   >  1:16441523/1‑35 (MQ=255)
                 gccaTTTTTTACGGGCACAGCCAAACTTTACCGTg                   >  1:8352794/1‑35 (MQ=255)
                 gccaTTTTTTACGGGCACAGCCAAACTTTACCGTg                   >  1:18271264/1‑35 (MQ=255)
                  ccaTTTTTTACGGGCACAGCCAAACTTTACCGTGc                  >  1:2856782/1‑35 (MQ=255)
                  ccaTTTTTTACGGGCACAGCCAAACTTTACCGTGc                  >  1:15238260/1‑35 (MQ=255)
                  ccaTTTTTTACGGGCACAGCCAAACTTTACCGTGc                  >  1:14671046/1‑35 (MQ=255)
                   caTTTTTTACGGGCACAGCCAAACTTTACCGTGcc                 >  1:8525722/1‑35 (MQ=255)
                   caTTTTTTACGGGCACAGCCAAACTTTACCGTGcc                 >  1:12268312/1‑35 (MQ=255)
                   caTTTTTTACGGGCACAGCCAAACTTTACCGTGcc                 >  1:18987985/1‑35 (MQ=255)
                    ttttttcGCGGCCCCAGCCAAACTTTACCGTGccc                <  1:6321054/34‑1 (MQ=19)
                    ttttttcACGGCCCCAGCCAAACTTTACCGTGccc                <  1:9369993/34‑1 (MQ=25)
                    aTTTTTTACGGGCACAGCCAAACTTTACCGTGccc                >  1:7908233/1‑35 (MQ=255)
                    aTTTTTTACGGGCACAGCCAAACTTTACCGTGccc                >  1:11873961/1‑35 (MQ=255)
                    aTTTTTTACGGGCACAGCCAAACTTTACCGTGccc                >  1:10155485/1‑35 (MQ=255)
                     ttttttACGGGCACAGCCAAACTTTACCGTGCCCt               >  1:3940811/1‑35 (MQ=255)
                     ttttttACGGGCACAGCCAAACTTTACCGTGCCCt               >  1:9381937/1‑35 (MQ=255)
                      tttttCCGGCCCCAGCCAAACTTTACCGTGCCCTa              <  1:3457234/35‑1 (MQ=25)
                      tttttCCGGCCCCAGCCAAACTTTACCGTGCCCTa              <  1:15132110/35‑1 (MQ=25)
                      tttttACGGGCACAGCCAAACTTTACCGCGCCCTa              >  1:1323577/1‑35 (MQ=255)
                      tttttACGGGCACAGCCAAACCTTACCGTGCCCTa              >  1:4220616/1‑35 (MQ=255)
                       ttttCCGGCCCCAGCCAAACTTTACCGTGCCCTaa             <  1:1378078/35‑1 (MQ=25)
                       ttttACGGGCACAGCCAAACTTTACCGTGCCCTaa             >  1:18369717/1‑35 (MQ=255)
                       tttgacgccccCAGCCAAACTTTACCGTGCCCTaa             >  1:5977588‑M1/12‑35 (MQ=255)
                        tttCCGGCCCCAGCCAAACTTTACCGTGCCCTAAt            <  1:16216850/35‑1 (MQ=25)
                        tttCCGGCCCCAGCCAAACTTTACCGTGCCCTAAt            <  1:10924462/35‑1 (MQ=25)
                        tttCCGGCCCCAGCCAAACTTTACCGTGCCCTAAt            <  1:15876748/35‑1 (MQ=25)
                        tttACGGGCACAGCCAAACTTTACCGTGCCCTAAt            >  1:5362430/1‑35 (MQ=255)
                        tttACGGGCACAGCCAAACTTTACCGTGCCCTAAt            >  1:16344401/1‑35 (MQ=255)
                         ttACGGGCACAGCCAAACTTTACCGTGCCCTAATa           >  1:17517688/1‑35 (MQ=255)
                         tcccgccccCAGCCAAACTTTACCGTGCCCTAATa           >  1:14416748‑M1/10‑35 (MQ=255)
                          tACGGGCCCAGCCAAACTTTACCGTGCCCTAATAc          <  1:20131534/35‑1 (MQ=255)
                          tACGGGCACAGCCAAACCTTACCGTGCCCTAATAc          >  1:2693405/1‑35 (MQ=255)
                          cccgccccCAGCCAAACTTTACCGTGCCCTAATAc          >  1:8839604‑M1/9‑35 (MQ=255)
                           ccggcccCAGCCAAACTTTACCGTGCCCTAATACg         >  1:5725753‑M1/8‑35 (MQ=255)
                           ccgccccCAGCCAAACTTTACCGTGCCCTAATACg         >  1:18772611‑M1/8‑35 (MQ=255)
                           aCGGGCACAGCCAAACTTTACCGTGCCCTAATACg         >  1:662538/1‑35 (MQ=255)
                            gggcccCAGCCAAACTTTACCGTGCCCTAATACGa        >  1:1656956‑M1/7‑35 (MQ=255)
                            gcgcccCAGCCAAACTTTACCGTGCCCTAATACGa        >  1:17847047‑M1/7‑35 (MQ=255)
                            cggcccCAGCCAAACTTTACCGTGCCCTAATACGa        >  1:1053734‑M1/7‑35 (MQ=255)
                            cggcccCAGCCAAACTTTACCGTGCCCTAATACGa        >  1:10468763‑M1/7‑35 (MQ=255)
                            cgccccCAGCCAAACTTTACCGTGCCCTAATACGa        >  1:17086886‑M1/7‑35 (MQ=255)
                            cGGGCACAGCCAAACTTTACCGTGCCCTAATACGa        >  1:20104024/1‑35 (MQ=255)
                            cGGGCACAGCCAAACTTTACCGTGCCCTAATACGa        >  1:752827/1‑35 (MQ=255)
                             gggCACAGCCAAACTTTACCGTGCCCTAATACGAc       >  1:20350501/1‑35 (MQ=255)
                             cgcccCAGCCAAACTTTACCGTGCCCTAATACGAc       >  1:8655983‑M1/6‑35 (MQ=255)
                              ggCACAGCCAAACTTTACCGTGCCCTAATACGACa      >  1:18797945/1‑35 (MQ=255)
                              ggCACAGCAAAACTTTACCGTGCCCTAATACGACa      <  1:11958378/35‑1 (MQ=255)
                               gCACAGCCAAACTTTACCGTGCCCTAATACGACaa     >  1:9329045/1‑35 (MQ=255)
                               gCACAGCCAAACTTTACCGTGCCCTAATACGACaa     >  1:17514328/1‑35 (MQ=255)
                               gCACAGCCAAACTTTACCGTGCCCTAATACGACaa     >  1:16631555/1‑35 (MQ=255)
                               cccCAGCCAAACTTTACCGTGCCCTAATACGACaa     >  1:16613256‑M1/4‑35 (MQ=255)
                               ccacaGCCAAACTTTACCGTGCCCTAATACGACaa     <  1:8835966/34‑1 (MQ=255)
                                ccCAGCCAAACTTTACCGTGCCCTAATACGACaaa    >  1:14269404‑M1/3‑35 (MQ=255)
                                ccCAGCCAAACTTTACCGTGCCCTAATACGACaaa    >  1:12732516‑M1/3‑35 (MQ=255)
                                cacaGCCAAACTTTACCGTGCCCTAATACGACaaa    >  1:15292500/1‑35 (MQ=255)
                                cacaGCCAAACTTTACCGTGCCCTAATACGACaaa    >  1:6389958/1‑35 (MQ=255)
                                cacaGCCAAACTTTACCGTGCCCTAATACGACaaa    >  1:14364479/1‑35 (MQ=255)
                                 acaGCCAAACTTTACCGTGCCCTAATACGACaaaa   >  1:19151486/1‑35 (MQ=255)
                                 acaGCCAAACTTTACCGTGCCCTAATACGACaaaa   >  1:17961300/1‑35 (MQ=255)
                                 acaGCCAAACTTTACCGTGCCCTAATACGACaaaa   >  1:12711433/1‑35 (MQ=255)
                                 acaGCCAAACTTTACCGTGCCCTAATACGACaaaa   >  1:14135917/1‑35 (MQ=255)
                                 acaGCCAAACTTTACCGTGCCCTAATACGACaaaa   >  1:564539/1‑35 (MQ=255)
                                  CAGCCAAACTTTACCGTGCCCTAATACGACAAAAg  >  1:19304921‑M1/1‑35 (MQ=255)
                                  CAGCCAAACTTTACCGTGCCCTAATACGACAAAAg  >  1:19619160‑M1/1‑35 (MQ=255)
                                  CAGCCAAACTTTACCGTGCCCTAATACGACAAAAg  >  1:17295892‑M1/1‑35 (MQ=255)
                                  CAGCCAAACTTTACCGTGCCCTAATACGACAAAAg  <  1:5344304‑M1/35‑1 (MQ=255)
                                  |                                  
TTCCTTGTGTATAGCCAGCCATTTTTTACGGGCACAGCCAAACTTTACCGTGCCCTAATACGACAAAAG  >  REL606/2283352‑2283420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.