New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1145450100 (0.970)8 (0.100) 4/36 NT 10.0% intergenic (‑15/‑140) flgA/flgB flagellar basal body P‑ring biosynthesis protein A/flagellar basal‑body rod protein B
?REL606 = 3613817 69 (0.900)coding (1255/1950 nt) yhjK predicted diguanylate cyclase

CCACGCTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1145411‑1145450
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaCAGGTCGAGATGACCAGCGGTAAACTGGTCAGTG  <  REL606/3613817‑3613784
                                                                          
CCACGCTACGTTTTATTATCAGCATTTTCGCCCCC                                         >  1:20611451/1‑35
CCACGCTACGTTTTATTATCAGCATTTTCGCCCCC                                         >  1:5458719/1‑35
CCACGCTACGTTTTATTATCAGCATTTTCGCCCCC                                         >  1:2095500/1‑35
CCACGCTACGTTTTATTATCAGCATTTTCGCCCCC                                         >  1:19930627/1‑35
 CACGCTACGTTTTATTATCAGCATTTTCGCCCCCA                                        >  1:15692998/1‑35
 CACGCTACGTTTTATTATCAGCATTTTCGCCCCCA                                        <  1:18979981/35‑1
  ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG                                       <  1:15206029/35‑1
  ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG                                       >  1:14460504/1‑35
  ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG                                       <  1:1413090/35‑1
  ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG                                       >  1:6786419/1‑35
  ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG                                       <  1:7567780/35‑1
  ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG                                       >  1:4495391/1‑35
  ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG                                       >  1:8444740/1‑35
  ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG                                       <  1:3745178/35‑1
  ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG                                       >  1:17469295/1‑35
  ACGCTACGTTTTATTATCAGCATTTTCGCCCCCAG                                       >  1:1952671/1‑35
  ACGCTACGTTTTATTATCAGCATTTTCGACCCCAG                                       <  1:5705020/35‑1
   CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC                                      >  1:5633765/1‑35
   CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC                                      >  1:175815/1‑35
   CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC                                      <  1:18401008/35‑1
   CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC                                      >  1:6747868/1‑35
   CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC                                      >  1:14149553/1‑35
   CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC                                      >  1:7414008/1‑35
   CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC                                      <  1:8268338/35‑1
   CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC                                      >  1:11239937/1‑35
   CGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC                                      >  1:312920/1‑35
    GCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC                                     <  1:3832916/35‑1
    GCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC                                     >  1:2231038/1‑35
    GCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC                                     >  1:3288261/1‑35
    GCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC                                     >  1:5609996/1‑35
    GCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC                                     <  1:8742543/35‑1
     CTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA                                    <  1:8261194/35‑1
     CTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA                                    <  1:4074734/35‑1
                      gcTTTTCGCCCCCAGCCACAGGTCGAGATGACCAG                   <  1:2976972/33‑1
                       tTTTTCCCCCCCAGCCACAGGTCGAGATGACCAGC                  <  1:18138525/34‑1
                       cTTTTCCCCCCCAGCCACAGGTCGAGATGACCAGC                  <  1:3456711/34‑1
                        TTTTCCCCCCCAGCCACAGGTCGAGATGACCAGCG                 <  1:5227241/35‑1
                         TTTCCCCCCCAGCCACAGGTCGAGATGACCAGCGG                <  1:14765201/35‑1
                          cTCGCCCCCAGCCACAGGTCGAGATGACCAGCGGT               <  1:9844940/34‑1
                          TTCGCCCCCAGCCACAGGTCGAGATGACCAGCGGT               <  1:3871715/35‑1
                           tccCCCCCAGCCACAGGTCGAGATGACCAGCGGTA              <  1:15258991/32‑1
                           tccCCCCCAGCCACAGGTCGAGATGACCAGCGGTA              <  1:11139360/32‑1
                            ccCCCCCAGCCACAGGTCGAGATGACCAGCGGTAA             <  1:1663014/33‑1
                            CGCTCCCAGCCACAGGTCGAGATGACCAGCGGTAA             <  1:5267305/35‑1
                             cCCCCCAGCCACAGGTCGAGATGACCAGCGGTAAA            <  1:6472871/34‑1
                             cCCCCCAGCCACAGGTCGAGATGACCAGCGGTAAA            <  1:1139372/34‑1
                             cCCCCCAGCCACAGGTCGAGATGACCAGCGGTAAA            <  1:9341412/34‑1
                             aCCCCCAGCCACAGGTCGAGATGACCAGCGGTAAA            <  1:10148076/34‑1
                              CCCCCAGCCACAGGTCGAGATGACCAGCGGTAAAC           <  1:11272368/35‑1
                              CCCCCAGCCACAGGTCGAGATGACCAGCGGTAAAC           <  1:8867781/35‑1
                              CCCCCAGCCACAGGTCGAGATGACCAGCGGTAAAC           <  1:8329763/35‑1
                              CCCCCAGCCACAGGTCGAGATGACCAGCGGTAAAC           <  1:4234132/35‑1
                               CCCCAGCCACAGGTCGAGATGACCAGCGGTAAACT          <  1:8356968/35‑1
                               CCCCAGCCACAGGTCGAGATGACCAGCGGTAAACT          <  1:16577309/35‑1
                                CCCAGCCACAGGTCGAGATGACCAGCGGTAAACTG         <  1:2845872/35‑1
                                 CCAGCCACAGGTCGAGATGACCAGCGGTAAACTGG        <  1:9601908/35‑1
                                 CCAGCCACAGGTCGAGATGACCAGCGGTAAACTGG        <  1:18163114/35‑1
                                  CAGCCACAGGTCGAGATGACCAGCGGTAAAATGGT       >  1:13628533/1‑35
                                  CAGCCACAGGTCGAGATGACCAGCGGTAAAATGGT       >  1:6897450/1‑35
                                   AGCCACAGGTCGAGATGACCAGCTGTAAACTGGTC      >  1:7027816/1‑35
                                   AGCCACAGGTCGAGATGACCAGCGGTAAACTGGTC      <  1:3723687/35‑1
                                   AGCCACAGGTCGAGATGACCAGCGGTAAACTGGTC      >  1:5377387/1‑35
                                   AGCCACAGGTCGAGATGACCAGCGGTAAACTGGTC      <  1:17130524/35‑1
                                   AGCCACAGGTCGAGATGACCAGCGGTAAACTGGTC      <  1:11405897/35‑1
                                   AGCCACAGGTCGAGATGACCAGCGGTAAACTGGTC      >  1:15376374/1‑35
                                   AGCCACAGGTCGAGATGACCAGCGGGAAACTGGTC      >  1:385226/1‑35
                                   AGCCACAGGTCGAGATGACCAGCGGGAAACTGGTC      >  1:11420197/1‑35
                                   AGCCACAGGTCGAGATGACCAGCGGGAAACTGGTC      >  1:11620837/1‑35
                                    GCCACAGGTCGAGATGACCAGCGGTAAACTGGTCA     <  1:7735430/35‑1
                                    GCCACAGGTCGAGATGACCAGCGGTAAACTGGTCA     <  1:15296884/35‑1
                                    GCCACAGGTCGAGATGACCAGCGGTAAACTGGTCA     <  1:13623530/35‑1
                                    GCCACAGGTCGAGATGACCAGCGGTAAACTGGTCA     <  1:18945157/35‑1
                                    GCCACAGGTCGAGATGACCAGCGGTAAACTGGTCA     <  1:20185828/35‑1
                                    GCCACAGGTCGAGATGACCAGCGGGAAACTGGTCA     >  1:20168428/1‑35
                                     CCACAGGTCGAGATGACCAGCGGTAAACTGGTCAG    <  1:5996164/35‑1
                                     CCACAGGTCGAGATGACCAGCGGTAAACTGGTCAG    <  1:15419607/35‑1
                                     CCACAGGTCGAGATGACCAGCGGTAAACTGGTCAG    >  1:2342955/1‑35
                                     CCACAGGTCGAGATGACCAGCGGTAAACTGGTCAG    <  1:4176129/35‑1
                                      CACAGGTCGAGATGACCAGCGGTAAACTGGTCAGT   <  1:13664452/35‑1
                                      CACAGGTCGAGATGACCAGCGGTAAACTGGTCAGT   <  1:2093270/35‑1
                                      CACAGGTCGAGATGACCAGCGGTAAACTGGTCAGT   <  1:16560975/35‑1
                                      CACAGGTCGAGATGACCAGCGGTAAACTGGTCAGT   <  1:5629024/35‑1
                                       ACAGGTCGAGATGACCAGCGGTAAACTGGTCAGTG  >  1:13202349/1‑35
                                       ACAGGTCGAGATGACCAGCGGTAAACTGGTCAGTG  <  1:17822454/35‑1
                                       ACAGGTCGAGATGACCAGCGGTAAACTGGTCAGTG  <  1:2730403/35‑1
                                                                          
CCACGCTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1145411‑1145450
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaCAGGTCGAGATGACCAGCGGTAAACTGGTCAGTG  <  REL606/3613817‑3613784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.