New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 411751 = | 19 (0.180) | 8 (0.080) | 3/44 | NT | 12.3% | coding (313/591 nt) | thiJ | hypothetical protein |
? | REL606 | = 1138232 | 97 (1.030) | coding (395/648 nt) | grxB | glutaredoxin 2 (Grx2) |
TGCGGTACCAGCACGGTGGCTGGCGCGGCGCAAA‑TAGCCGCGACGATACGCCCGGAACGGTGGAACTGT > REL606/411717‑411785 | tGCGGTACCAGCACGGTGGCTGGCGCGGCGCAAA‑t < 1:14923551/35‑1 (MQ=255) tGCGGTACCAGCACGGTGGCTGGCGCGGCGCAAA‑t < 1:7231498/35‑1 (MQ=255) gCGGTACCAGCACGGTGGCTGGCGCGGCGCAAA‑Ta < 1:16011013/35‑1 (MQ=255) gCGGTACCAGCACGGTGGCTGGCGCGGCGCAAA‑Ta < 1:13957409/35‑1 (MQ=255) gCGGTACCAGCACGGTGGCTGGCGCGGCGCAAA‑Ta < 1:17863705/35‑1 (MQ=255) gCGGTACCAGCACGGTGGCTGGCGCGGCGCAAA‑Ta < 1:10133163/35‑1 (MQ=255) agaccgtcagagtgggccagcaggtcggcaaaatt < 1:3495012‑M1/1‑1 (MQ=255) agaccgtcagagtgggccagcaggtcggcaaaatt > 1:7436980‑M1/35‑35 (MQ=255) agaccgtcagagtgggccagcaggtcggcaaaatt < 1:18798501‑M1/1‑1 (MQ=255) agaccgtcagagtgggccagcaggtcggcaaaatt > 1:19423722‑M1/35‑35 (MQ=255) agaccgtcagagtgggccagcaggtcggcaaaatt < 1:20121274‑M1/1‑1 (MQ=255) agaccgtcagagtgggccagcaggtccgcaaaatt < 1:16852742‑M1/1‑1 (MQ=255) gaccgtcagagtgggccagcaggtcggcaaaatTa < 1:6843817‑M1/2‑1 (MQ=255) gaccgtcagagtgggccagcaggtcggcaaaatTa > 1:16046240‑M1/34‑35 (MQ=255) gaccgtcagagtgggccagcaggtcggcaaaatTa > 1:9402505‑M1/34‑35 (MQ=255) cGGTACCAGCACGGTGGCTGGCGCGGCGCAAA‑TAg < 1:11538101/35‑1 (MQ=255) cGGTACCAGCACGGTGGCTGGCGCGGCGCAAA‑TAg < 1:6965140/35‑1 (MQ=255) ggTACCAGCACGGTGGCTGGCGCGGCGCAAA‑TAGc < 1:7649917/35‑1 (MQ=255) gtcccAGCGCGGTGGCTGGCGCGGCGCAAA‑TAGcc < 1:13592663/32‑1 (MQ=37) gTACCAGCACGGTGGCTGGCGCGGGGCCAA‑Taaga > 1:10829153/1‑32 (MQ=25) gTACCAGCACGGTGGCTGGCGCGGCGCAAA‑TAGcc < 1:7494089/35‑1 (MQ=255) ggctggcGCGGCGCAAA‑TATCCGCGACGAAACGcc > 1:2732964/1‑35 (MQ=37) cgggcgcggcaaAAT‑TAGCCGCGACGATACGCCCg < 1:17660675/33‑1 (MQ=21) tggcGCGGCGCAAA‑TAGCCGCGACGATACGCCCgg > 1:15201330/1‑35 (MQ=255) tggcGCGGCGCAAA‑TAGCCGCGACGATACGCCCgg > 1:14622639/1‑35 (MQ=255) tggcGCGGCGCAAA‑TAGCCGCGAAGATACGCCCgg > 1:17645617/1‑35 (MQ=255) gggcgcggcagATT‑TAGCCGCGACGATACGCCCgg < 1:13952355/34‑1 (MQ=16) ggcgcggcgcAAA‑TAGCCGCGACGATACGGCCGGa > 1:20496253/1‑35 (MQ=255) ggcgcggcgcAAA‑TAGCCGCGACGATACGCCCGGa > 1:13429123/1‑35 (MQ=255) ggcgcggcgcAAA‑TAGCCGCGACGATACGCCCGGa > 1:360111/1‑35 (MQ=255) gcgcggcgcAAA‑TAGCCGCGACGATACGCCCGGaa > 1:18908766/1‑35 (MQ=255) cgcggcgcAAA‑TAGCCGCGACGATACGCCCGGAAc > 1:14697672/1‑35 (MQ=255) cgcggcgcAAA‑TAGCCGCGACGATACGCCAGGAAc > 1:19112656/1‑35 (MQ=255) gcggcgcAAA‑TAGCCGCGACGATACGCCCGGAACg > 1:10348133/1‑35 (MQ=255) gcggcgcAAA‑TAGCCGCGACGATACGCCCGGAACg > 1:7769451/1‑35 (MQ=255) gcggcgcAAA‑TAGCCGCGACGATACGCCCGGAACg > 1:12056440/1‑35 (MQ=255) cggggcaaaatTAGCCGCGACGATACGCCCGGAAc > 1:1830325‑M1/12‑35 (MQ=255) gggcggAAATTAGCCGCGACGATACGCCCGGAACg < 1:11700070/34‑1 (MQ=25) gcggcgaaatTAGCCGCGACGATACGCCCGGAACg > 1:3806041‑M1/11‑35 (MQ=255) cggcgcAAA‑TAGCCGCGACGATACGCCCGGAACgg > 1:8668289/1‑35 (MQ=255) cggcaaaatTAGCCGCGACGATACGCCCGGAACgg > 1:6307786‑M1/10‑35 (MQ=255) ggcgaaatTAGCCGCGACGATACGCCCGGAACGGt > 1:15156006‑M1/9‑35 (MQ=255) ggcaaattTAGCCGCGACGATACGCCCGGAACGGt > 1:20469088‑M1/9‑35 (MQ=255) ggcaaaatTAGCCGCGACGATACGCCCGGAACGGt > 1:3610130‑M1/9‑35 (MQ=255) gcgcAAA‑TAGCCGCGACGATACGCCCGGAACGGTg > 1:14050651/1‑35 (MQ=255) gcacaatTAGCCGCGACGATACGCCCGGAACGGTg > 1:6535422‑M1/8‑35 (MQ=255) cgcAAA‑TAGCCGCGACGATACGCCCGGAACGGTgg > 1:15841771/1‑35 (MQ=255) acaaaatTAGCCGCGACGATACGCCCGGAACGGTg > 1:17698701‑M1/8‑35 (MQ=255) gcAAA‑TAGCCGCGACGATACGCCCGGAACGGTggg > 1:6953025/1‑34 (MQ=255) gcAAA‑TAGCCGCGACGATACGCCCGGAACGGTGGa > 1:11206/1‑35 (MQ=255) gcAAA‑TAGCCGCGACGATACGCCCGGAACGGGGGa > 1:18619851/1‑35 (MQ=255) cAAA‑TAGCCGCGACGATACGCCCGGAACGGTggga > 1:149350/1‑33 (MQ=255) cAAA‑TAGCCGCGACGATACGCCCGGAACGGTGGaa > 1:3329349/1‑35 (MQ=255) cAAA‑TAGCCGCGACGATACGCCCGGAACGGTGGaa > 1:12133708/1‑35 (MQ=255) cAAA‑TAGCCGCGACGATACGCCCGGAACGGTGGaa > 1:1740426/1‑35 (MQ=255) aaaatTAGCCGCGACGATACGCCCGGAACGGTGGa > 1:8080771‑M1/6‑35 (MQ=255) aaatTAGCCGCGACGATACGCCCGGAACGGTGGaa > 1:11059888‑M1/5‑35 (MQ=255) aaatTAGCCGCGACGATACGCCCGGAACGGTGGaa > 1:5716611‑M1/5‑35 (MQ=255) aaa‑TAGCCGCGACGATACGCCCGGAACGGTGGAAc > 1:7774605/1‑35 (MQ=255) aaa‑TAGCCGCGACGATACGCCCGGAACGGTGGAAc > 1:18990876/1‑35 (MQ=255) aaa‑TAGCCGCGACGATACGCCCGGAACGGTGGAAc > 1:1679046/1‑35 (MQ=255) atttAGCCGCGACGATACGCCAGGAACGGTGGAAc < 1:9629859/32‑1 (MQ=37) attTAGCCGCGACGATACGCCCGGAACGGTGGAAc > 1:13311324‑M1/4‑35 (MQ=255) aatTAGCCGCGACGATACGCCCGGAACGGTGGAAc > 1:12676024‑M1/4‑35 (MQ=255) aatTAGCCGCGACGATACGCCCGGAACGGTGGAAc > 1:3233185‑M1/4‑35 (MQ=255) aa‑TAGCCGCGACGATACGCCCGGAACGGTGGAACt > 1:8481779/1‑35 (MQ=255) ttTAGCCGCGACGATACGCCCGGAACGGTGGAACt > 1:10236124‑M1/3‑35 (MQ=255) ttTAGCCGCGACGATACGCCCGGAACGGTGGAACt > 1:875189‑M1/3‑35 (MQ=255) atTAGCCGCGACGATACGCCCGGAACGGTGGAACt > 1:2958818‑M1/3‑35 (MQ=255) atTAGCCGCGACGATACGCCCGGAACGGTGGAACt > 1:9558335‑M1/3‑35 (MQ=255) atTAGCCGCGACGATACGCCCGGAACGGTGGAACt > 1:10396159‑M1/3‑35 (MQ=255) a‑TAGCCGCGACGATACGCCCTGAACGGTGGAACTg > 1:14294355/1‑35 (MQ=255) a‑TAGCCGCGACGATACGCCCGGAACTGTGGAACTg > 1:2016243/1‑35 (MQ=255) tTAGCCGCGACGATACGCCAGGAACGGTGGAACTg > 1:17439896‑M1/2‑35 (MQ=255) tAGCCGCGATGATACGCCCGGAACGGGGGAACTGt > 1:8819811/1‑35 (MQ=37) TAGCCGCGACGATACGCCCGGAACGGTGGCACTGt < 1:4238296‑M1/35‑1 (MQ=255) TAGCCGCGACGATACGCCCGGAACGGTGGAACTGt < 1:18070390‑M1/35‑1 (MQ=255) TAGCCGCGACGATACGCCCGGAACGGTGGAACTGt > 1:5247114‑M1/1‑35 (MQ=255) TAGCCGCGACGATACGCCCGGAACGGTGGAACTGt > 1:16660168‑M1/1‑35 (MQ=255) | TGCGGTACCAGCACGGTGGCTGGCGCGGCGCAAA‑TAGCCGCGACGATACGCCCGGAACGGTGGAACTGT > REL606/411717‑411785 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |