New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1332666 =72 (0.700)5 (0.060) 4/36 NT 7.6% coding (440/975 nt) cysB DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding
?REL606 = 4432999 68 (0.880)intergenic (‑97/‑213) ppa/ytfQ inorganic pyrophosphatase/predicted sugar transporter subunit: periplasmic‑binding component of ABC superfamily

ATCACTAAATCTTCATACAGATGCAGCGCTTCTGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1332705‑1332666
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgaAAAAGGAAAATGAAGACGAAAACAAGCGAAGACA  <  REL606/4432999‑4432966
                                                                          
ATCACTAAATCTTCATACAGATGCAGCCCTTCTGT                                         >  1:4038513/1‑35
 TCACTAAATCTTCATACAGATGCAGCGCTTCTGTG                                        >  1:19536536/1‑35
 TCACTAAATCTTCATACAGATGCAGCGCTTCTGTG                                        <  1:6972836/35‑1
  CACTAAATCTTCATACAGATGCAGCGCTTCTGTGG                                       >  1:11296421/1‑35
  CACTAAATCTTCATACAGATGCAGCGCTTCTGTGG                                       <  1:14152148/35‑1
   ACTAAATCTTCATACAGATGCAGCGCTTCTGTGGC                                      <  1:11683919/35‑1
   ACTAAATCTTCATACAGATGCAGCGCTTCTGTGGC                                      >  1:12434124/1‑35
   ACTAAATCTTCATACAGATGCAGCGCTTCTGTGGC                                      <  1:8467317/35‑1
    CTAAATCTTCATACAGATGCAGCGCTTCTGTGGCG                                     <  1:10576553/35‑1
    CTAAATCTTCATACAGATGCAGCGCTTCTGTGGCG                                     <  1:15040973/35‑1
    CTAAATCTTCATACAGATGCAGCGCTTCTGTGGCG                                     >  1:16448193/1‑35
    CTAAATCTTCATACAGATGCAGCGCTTCTGTGGCG                                     <  1:20198915/35‑1
    CTAAATCTTCATACAGATGCAGCGCTTCTGTGGCG                                     <  1:13135104/35‑1
    CTAAATCTTCATACAGATGCAGCGCTTCTGTGGCG                                     <  1:13880826/35‑1
     TAAATCTTCATACAGATGCAGCGCTTCTGTGGCGA                                    >  1:15490790/1‑35
     TAAATCTTCATACAGATGCAGCGCTTCTGTGGCGA                                    >  1:5434526/1‑35
     TAAATCTTCATACAGATGCAGCGCTTCTGTGGCGA                                    >  1:12073488/1‑35
     TAAATCTTCATACAGATGCAGCGCTTCTGTGGCGA                                    >  1:1151521/1‑35
      AAATCTTCATACAGATGCAGCGCTTCTGTGGCGAA                                   >  1:17214944/1‑35
      AAATCTTCATACAGATGCAGCGCTTCTGTGGCGAA                                   >  1:17476967/1‑35
        ATCTTCATACAGATGCAGCGCTTCTGTGGCGAAAA                                 >  1:14715296/1‑35
        ATCTTCATACAGATGCAGCGCTTCTGTGGCGAAAA                                 >  1:6690432/1‑35
          CTTCATACAGATGCAGCGCTTCTGTGGCGAAAAtg                               >  1:14890728/1‑33
           TTCATACAGATGCAGCGCTTCTGTGGCGAAAACGG                              >  1:8456915/1‑35
            TCATACAGATGCAGCGCTTCTGTGGCGAAAACGGA                             >  1:17768240/1‑35
             CATACAGATGCAGCGCTTCTGTGGCGAAAACGGAA                            >  1:12877139/1‑35
             CATACAGATGCAGCGCTTCTGTGGCGAAAAAGGAA                            >  1:8680838/1‑35
                   GATGCAGCGCTTCTGTGGCGAAAAAGGAAAAAGAA                      >  1:7121480/1‑35
                                  TGGCGAAAAAGGAAAATGAAGACGAAAACAAGCGA       >  1:16719874/1‑35
                                  TGGCGAAAAAGGAAAATGAAGACGAAAACAAGCGA       <  1:1534831/35‑1
                                  TGGCGAAAAAGGAAAATGAAGACGAAAACAAGCGA       >  1:1967099/1‑35
                                  TGGCGAAAAAGGAAAATGAAGACGAAAACAAGCGA       >  1:3776144/1‑35
                                  TGGCGAAAAAGGAAAATGAAGACGAAAACAAGCGA       <  1:6850604/35‑1
                                   GGCGAAAAAGGAAAATGAAGACGAAAACAAGCGAA      <  1:6264497/35‑1
                                   GGCGAAAAAGGAAAATGAAGACGAAAACAAGCGAA      <  1:6268450/35‑1
                                   GGCGAAAAAGGAAAATGAAGACGAAAACAAGCGAA      >  1:3240461/1‑35
                                   GGCGAAAAAGGAAAATGAAGACGAAAACAAGCGAA      >  1:16246215/1‑35
                                   GGCGAAAAAGGAAAATGAAGACGAAAACAAGCGAA      >  1:14906554/1‑35
                                   GGCGAAAAAGGAAAATGAAGACGAAAACAAGCGAA      >  1:10245122/1‑35
                                    GCGAAAAAGGAAAATGAAGACGAAAACAAGCGAAt     >  1:16272669/1‑34
                                    GCGAAAAAGGAAAATGAAGACGAAAACAAGCGAAG     >  1:2201208/1‑35
                                    GCGAAAAAGGAAAATGAAGACGAAAACAAGCGAAG     >  1:19952737/1‑35
                                    GCGAAAAAGGAAAATGAAGACGAAAACAAGCGAAG     >  1:16395471/1‑35
                                     CGAAAAAGGAAAATGAAGACGAAAACAAGCTAAGA    >  1:17638866/1‑35
                                     CGAAAAAGGAAAATGAAGACGAAAACAAGCGAAGA    >  1:3561084/1‑35
                                     CGAAAAAGGAAAATGAAGACGAAAACAAGCGAAGA    >  1:46003/1‑35
                                     CGAAAAAGGAAAATGAAGACGAAAACAAGCGAAGA    >  1:16864209/1‑35
                                      GAAAAATGAAAATGAAGACGAAAACAAGCGAAGAC   >  1:12422934/1‑35
                                      GAAAAAGGAAAATGAAGACGAAAACAAGCGAAGAC   <  1:8045780/35‑1
                                      GAAAAAGGAAAATGAAGACGAAAACAAGCGAAGAC   >  1:6169422/1‑35
                                      GAAAAAGGAAAATGAAGACGAAAACAAGCGAAGAC   >  1:5241325/1‑35
                                      GAAAAAGGAAAATGAAGACGAAAACAAGCGAAGAC   >  1:2894191/1‑35
                                      GAAAAAGGAAAATGAAGACGAAAACAAGCGAAGAC   >  1:18700202/1‑35
                                      GAAAAAGGAAAATGAAGACGAAAACAAGCGAAGAC   <  1:1421305/35‑1
                                       AAAAAGGAAAATGAAGACGAAAACAAGCGAAGACA  >  1:5011474/1‑35
                                       AAAAAGGAAAATGAAGACGAAAACAAGCGAAGACA  <  1:8652328/35‑1
                                       AAAAAGGAAAATGAAGACGAAAACAAGCGAAGACA  <  1:885363/35‑1
                                       AAAAAGGAAAATGAAGACGAAAACAAGCGAAGACA  >  1:9487985/1‑35
                                                                          
ATCACTAAATCTTCATACAGATGCAGCGCTTCTGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1332705‑1332666
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgaAAAAGGAAAATGAAGACGAAAACAAGCGAAGACA  <  REL606/4432999‑4432966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.