New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2979870135 (1.310)6 (0.060) 3/44 NT 6.2% coding (962/981 nt) yggR predicted transporter
?REL606 4245169 = 59 (0.630)coding (456/1080 nt) alr alanine racemase

ATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2979835‑2979870
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGCCGGTGAATATCGTCAGCCATTTTGCGCGCGCG  >  REL606/4245169‑4245202
                                                                      
ATCGGGCATGGCAACGTCACAAACGCCCTTCCCCC                                     >  1:5340597/1‑35
ATCGGGCATGGCAACGTCACAAACGCCCTTCCCCC                                     >  1:2282509/1‑35
ATCGGGCATGGCAACGTCACAAACGCCCTTCCCCC                                     >  1:13985486/1‑35
ATCGGGCATGGCAACGTCACAAACGCCCTTCCCCC                                     >  1:14935536/1‑35
 TCGGGCATGGCGACGTCACAAACGCCCTTCCCCCA                                    >  1:18985409/1‑35
 TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA                                    <  1:6199437/35‑1
 TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA                                    <  1:4358524/35‑1
 TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA                                    <  1:17782010/35‑1
 TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA                                    <  1:16945498/35‑1
 TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA                                    >  1:1554551/1‑35
 TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA                                    <  1:8381385/35‑1
                         CCCTTCCCCCAGCCGGTGAATATCGTCAGCCATTT            <  1:5592449/35‑1
                         CCCTTCCCCCAGCCGGTGAATATCGTCAGCCATTT            <  1:16767006/35‑1
                         CCCGTCCCCCAGCCGGTGAATATCGTCAGCCATTT            <  1:6353918/35‑1
                          CCTTCCCCCAGCCGGTGAATATCGTCAGCCATTTT           <  1:7472216/35‑1
                          CCTTCCCCCAGCCGGTGAATATCGTCAGCAATTTT           <  1:234016/35‑1
                            tcCCCCCAGCCGGTGAATATCGTCAGCCATTTTGC         <  1:12286861/33‑1
                            TTCCCCCAGCCGGTGAATATAGTCAGCCATTTTGC         <  1:11771260/35‑1
                              CCCCCAGCCGGTGAATATCGTCAGCCATTTTGCGC       <  1:7991776/35‑1
                              CCCCCAGCCGGTGAATATCGTCAGCCATTTTGCGC       <  1:16538202/35‑1
                              CCCCCAGCCGGTGAATATCGTCAGCCATTTTGCGC       <  1:5913218/35‑1
                               CCCCAGCCGGTGAATATCGTCAGCCATTTTGCGCG      <  1:11849682/35‑1
                                CCCAGCCGGTGAATATCGTCAGCCATTTTGCGCGC     <  1:13049195/35‑1
                                CCCAGCCGGTGAATATCGTCAGCCATTTTGCGCGC     <  1:15680501/35‑1
                                CCCAGCCGGTGAATATCGTCAGCCATTTTGCGCGC     <  1:10529672/35‑1
                                  CAGCCGGTGAATATCGTCAGCCATTTTTCGCGCGC   >  1:877193/1‑35
                                  CAGCCGGTGAATATCGTCAGCCATTTTTCGCGCGC   >  1:2128167/1‑35
                                  CAGCCGGTGAATATCGCCAGCCATTTTGCGCGCGC   >  1:11367485/1‑35
                                   AGCCTGTGAATATCGTCAGCCATTTTGCGCGCGCG  <  1:20203347/35‑1
                                   AGCCGGTGAATATCGTCAGCCATTTTTCGCGCGCG  >  1:19913371/1‑35
                                   AGCCGGTGAATATCGTCAGCCATTTTGCGCGCGCG  >  1:6840634/1‑35
                                   AGCCGGTGAATATCGTCAGCCATTTTGCGCGCGCG  >  1:14208843/1‑35
                                                                      
ATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2979835‑2979870
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGCCGGTGAATATCGTCAGCCATTTTGCGCGCGCG  >  REL606/4245169‑4245202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.