New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2216192 = | 62 (0.600) | 25 (0.310) | 6/38 | NT | 27.2% | coding (1142/1182 nt) | setB | lactose/glucose efflux system |
? | REL606 | = 3911582 | 85 (1.040) | coding (218/1551 nt) | yifB | predicted bifunctional enzyme and transcriptional regulator |
Only 100 of 184 total aligned reads displayed.
CACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAT > REL606/2216158‑2216226 | cACGCTGTGTTCTGGTTTGCGATGGTGATGATTAt < 1:6238779/35‑1 (MQ=255) cACGCTGTGTTCTGGTTTGCGATGGTGATGATTAt < 1:9402850/35‑1 (MQ=255) agatcagctggagccaggttgatggtgattttttt > 1:14402591‑M1/35‑35 (MQ=255) agatcagctggagccaggttgatggtgattttttt < 1:6011967‑M1/1‑1 (MQ=255) agatcagctggagccaggttgatggtgattttttt < 1:8050893‑M1/1‑1 (MQ=255) agatcagctggagccaggttgatggtgattttttt > 1:10695383‑M1/35‑35 (MQ=255) agatcagctggagccaggttgatggtgattttttt < 1:964487‑M1/1‑1 (MQ=255) agatcagctggagccaggttgatggcgattttttt < 1:19773184‑M1/1‑1 (MQ=255) gatcagctggagccaggttgatggtgattttttTc > 1:12297785‑M1/34‑35 (MQ=255) gatcagctggagccaggttgatggtgattttttTc > 1:797215‑M1/34‑35 (MQ=255) aCGCTGTGTTCTGGTTTGCGATGGTGATGATTATc > 1:7979581/1‑35 (MQ=255) aCGCTGTGTTCTGGTTTGCGATGGTGATGATTATc < 1:6703225/35‑1 (MQ=255) aCGCTGTGTTCTGGTTTGCGATGGTGATGATTATc > 1:3948737/1‑35 (MQ=255) aCGCTGTGTTCTGGTTTGCGATGGTGATGATTATc < 1:8707342/35‑1 (MQ=255) cGCTGTGTTCTGGTTTGCGATGGTGATGATTATCg < 1:18675580/35‑1 (MQ=255) cGCTGTGTTCTGGTTTGCGATGGTGATGATTATCg > 1:13432382/1‑35 (MQ=255) cGCTGTGTTCTGGTTTGCGATGGTGATGATTATCg > 1:3442029/1‑35 (MQ=255) atcagctggagccaggttgatggtgattttttTCg < 1:7322589‑M1/3‑1 (MQ=255) atcagctggagccaggttgatggtgattttttTCg < 1:18435123‑M1/3‑1 (MQ=255) tcagctggagccaggttgattgtgattttttTCGc < 1:16643655‑M1/4‑1 (MQ=255) tcagctggagccaggttgatggtgattttttTCGc > 1:2312938‑M1/32‑35 (MQ=255) tcagctggagccaggttgatggtgattttttTCGc > 1:5919155‑M1/32‑35 (MQ=255) gCTGTGTTCTGGTTTGCGATGGTGATGATTATCGc > 1:18140484/1‑35 (MQ=255) gCTGTGTTCTGGTTTGCGATGGTGATGATTATCGc > 1:5747440/1‑35 (MQ=255) gCTGTGTTCTGGTTTGCGATGGTGATGATTATCGc > 1:13125245/1‑35 (MQ=255) gCTGTGTTCTGGTTTGCGATGGTGATGATTATCGc > 1:8029300/1‑35 (MQ=255) cagctggagccaggttgatggtgattttttTCGcc > 1:15505987‑M1/31‑35 (MQ=255) cagctggagccaggttgatggtgattttttTCGcc > 1:9277491‑M1/31‑35 (MQ=255) cagctggagccaggttgatggtgattttttTCGcc < 1:8585542‑M1/5‑1 (MQ=255) cTGTGTTCTGGTTTGCGATGGTGATGATTATCGcc > 1:4373999/1‑35 (MQ=255) cTGTGTTCTGGTTTGCGATGGTGATGATTATCGcc < 1:14568157/35‑1 (MQ=255) cTGTGTTCTGGTTTGCGATGGTGATGATTATCGcc > 1:17310428/1‑35 (MQ=255) cTGTGTTCTGGTTTGCGATGGTGATGATTATCGca > 1:1585994/1‑34 (MQ=255) tgtgTTCTGGTTTGCGATTGTGATGATTATCGCCa > 1:14163977/1‑35 (MQ=255) tgtgTTCTGGTTTGCGATGGTGATGATTATCGccc > 1:11901605/1‑34 (MQ=255) tgtgTTCTGGTTTGCGATGGTGATGATTATCGCCa < 1:9847506/35‑1 (MQ=255) tgtgTTCTGGTTTGCGATGGTGATGATTATCGCCa < 1:713245/35‑1 (MQ=255) gtgtTCTGGTTTGCGATGGTGATGATTATCGCCAc > 1:16869786/1‑35 (MQ=255) ttCTGGTTTGAGATGGTGATGATTATCGCAActct < 1:17933095/35‑1 (MQ=37) cTGGTTTGCGATGGTGATGATTATCGCCACTCTGt > 1:14607503/1‑35 (MQ=255) tGGTTTGCGATGGTGATGATTATCGCCACTCTGtt > 1:17363432/1‑35 (MQ=255) tGGTTTGCGATGGTGATGATTATCGCCACTCTGtt > 1:12852260/1‑35 (MQ=255) tGGTTTGCGATGGTGATGATTATCGCCACTCTGtt > 1:11917403/1‑35 (MQ=255) ggTTTGCGATGGTGATGATTATCGCCACTCTGttt > 1:4244241/1‑35 (MQ=255) ggTTTGCGATGGTGATGATTATCGCCACTCTGttt > 1:13623391/1‑35 (MQ=255) ggTTTGCGATGGTGATGATTATCGCCACTCTGttt > 1:4029582/1‑35 (MQ=255) gTTTGCGATGGTGATGATTATCGCCACTCTGtttt > 1:16081271/1‑35 (MQ=255) tttGCGATGGTGATGATTATCGCCACTCTGTTTTg > 1:9816695/1‑35 (MQ=255) tttGCGATGGTGATGATTATCGCCACTCTGTTTTg > 1:6811180/1‑35 (MQ=255) ttGCGATGGTGATGATTATCGCCACTCTGTTTTGc > 1:18322773/1‑35 (MQ=255) ttGCGATGGTGATGATTATCGCCACTCTGTTTTGc > 1:12595760/1‑35 (MQ=255) gATGGTGATGATTATCGCCACTCTGTTTTGCTTAc > 1:19862196/1‑35 (MQ=255) gATGGTGATGATTATCGCCACTCTGTTTTGCTTAc > 1:17986729/1‑35 (MQ=255) gATGGTGATGATTATCGCCACTCTGTTTTGCTTAc > 1:11649803/1‑35 (MQ=255) gATGGTGATGATTATCGCCACTCTGTTTTGCTTAc > 1:18023464/1‑35 (MQ=255) ttggtgatgttttTCGCCACTCTGTTTTGCTTACt > 1:1376070‑M1/14‑35 (MQ=255) gtggttattttttTCGCCACTCTGTTTTGCTTACt > 1:4978654‑M1/14‑35 (MQ=255) aTGGTGATGATTATCGCCACTCTGTTTTGCTTACt > 1:16695101/1‑35 (MQ=255) tGGTGATGATTATCGCCACTCTGTTTTGCTTACTg > 1:19509233/1‑35 (MQ=255) tGGTGATGATTATCGCCACTCTGTTTTGCTTACTg > 1:7486155/1‑35 (MQ=255) tGGTGATGATTATCGCCACTCTGTTTTGCTTACTg > 1:316990/1‑35 (MQ=255) ggtgtttttttTCGCCACTCTGTTTTGCTTACTGc > 1:5308582‑M1/12‑35 (MQ=255) gtgtttttttTCGCCACTCTGTTTTGCTTACTGCg > 1:4687927‑M1/11‑35 (MQ=255) gtgtttttttTCGCCACTCTGTTTTGCTTACTGCg > 1:5396241‑M1/11‑35 (MQ=255) tgtttttttTCGCCACTCTGTTTTGCTTACTGCgg > 1:3042381‑M1/10‑35 (MQ=255) tgtttttttTCGCCACTCTGTTTTGCTTACTGCgg > 1:2362885‑M1/10‑35 (MQ=255) tgaagaTTATCGCCACTCTGTTTTGCTTACTGCgg > 1:16093649/1‑35 (MQ=255) ggagtttttTCGCCACTCTGTTTTGCTTACTGCgg > 1:558547‑M1/10‑35 (MQ=255) gatgatTATCGCCACTCTGTTTTGCTTACTGCGGa > 1:13381374/1‑35 (MQ=255) gatgatTATCGCCACTCTGTTTTGCTTACTGCGGa > 1:10927087/1‑35 (MQ=255) gatgatTATCGCCACTCTGTTTTGCTTACTGCGGa > 1:17194985/1‑35 (MQ=255) gatgatTATCGCAACTCTGTTTTGCTTACTGCGGa < 1:19371191/35‑1 (MQ=255) attttttTCGCCACTCTGTTTTGCTTACTGCGGAt > 1:2931501‑M1/8‑35 (MQ=255) atgatTATCGCCACTCTGTTTTGCTTACTGCGGAt > 1:130019/1‑35 (MQ=255) atgatTATCGCCACTCTGTTTTGCTTACTGCGGAt > 1:6485889/1‑35 (MQ=255) ttttttTCGCCACTCTGTTTTGCTTACTGCGGAtt > 1:3697724‑M1/7‑35 (MQ=255) ttttttTCGCCACTCTGTTTTGCTTACTGCGGAtt > 1:12332625‑M1/7‑35 (MQ=255) ttttttTCGCCACTCTGTTTTGCTTACTGCGGAtt > 1:13833679‑M1/7‑35 (MQ=255) ttttttTCGCCACTCTGTTTTGCTTACTGCGGAtt > 1:12005343‑M1/7‑35 (MQ=255) ttttttTCGCCACTCTGTTTTGCTTACTGCGGAtt > 1:6042406‑M1/7‑35 (MQ=255) tgatTATCGCCACTCTGTTTTGCTTACTGCGGAtt > 1:14208856/1‑35 (MQ=255) tgatTATCGCCACTCTGTTTTGCTTACTGCGGAtt > 1:13469514/1‑35 (MQ=255) tttttTCGCCACTCTGTTTTGCTTACTGCGGATTa > 1:17257692‑M1/6‑35 (MQ=255) gatTATCTCCACTCTGTTTTGCTTACTGCGGATTa > 1:4820125/1‑35 (MQ=255) gatTATCTCCACTCTGTTTTGCTTACTGCGGATTa > 1:8361929/1‑35 (MQ=255) gatTATCGCCACTCTGTTTTGCTTACTGCGGATTa > 1:10699348/1‑35 (MQ=255) gatTATCGCCACTCTGTTTTGCTTACTGCGGATTa > 1:17569826/1‑35 (MQ=255) gatTATCGCCACTCTGTTTTGCTTACTGCGGATTa > 1:5896433/1‑35 (MQ=255) ttATCGCCACTCTGTTTTGCTTACTGCGGATTaaa > 1:12792373/1‑35 (MQ=255) tTCGCCACTCTGTTTTGCTTACTGCGGATTAAAGa > 1:2383593‑M1/2‑35 (MQ=255) tTCGCCACTCTGTTTTGCTTACTGCGGATTAAAGa > 1:8113712‑M1/2‑35 (MQ=255) tTCGCCACTCTGTTTTGCTTACTGCGGATTAAAGa > 1:19235242‑M1/2‑35 (MQ=255) aTCGCCACTCTGTTTTGCTTACTGCGGATTAAAGa > 1:11570128/1‑35 (MQ=255) aTCGCCACTCTGTTTTGCTTACTGCGGATTAAAGa > 1:11006925/1‑35 (MQ=255) aTCGCCACTCTGTTTTGCTTACTGCGGATTAAAGa > 1:6895412/1‑35 (MQ=255) TCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAt < 1:15679635‑M1/35‑1 (MQ=255) TCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAt > 1:19886845‑M1/1‑35 (MQ=255) TCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAt < 1:2880224‑M1/35‑1 (MQ=255) TCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAt > 1:18539506‑M1/1‑35 (MQ=255) TCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAt > 1:14973679‑M1/1‑35 (MQ=255) | CACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAT > REL606/2216158‑2216226 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |