New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1587129 = | 65 (0.630) | 7 (0.090) | 3/36 | NT | 12.3% | coding (244/435 nt) | marR | DNA‑binding transcriptional repressor of multiple antibiotic resistance |
? | REL606 | 2696580 = | 51 (0.660) | coding (481/2145 nt) | nrdE | ribonucleotide‑diphosphate reductase alpha subunit |
Only 100 of 130 total aligned reads displayed.
CGATGAAATGCTGTCAGGACGCTTTCAGCCAGCCACGCCAACATTCCTCAACTGCGGTAAGCAGCAGCG > REL606/2696546‑2696614 | cGATGAAATGCTGTCAGGACGCTTTCAgccagcca < 1:2496727/35‑1 (MQ=255) cGATGAAATGCTGTCAGGACGCTTTCAgccagcca > 1:2144571/1‑35 (MQ=255) cGATGAAATGCTGTCAGGACGCTTTCAgccagcca > 1:14884169/1‑35 (MQ=255) cGATGAAATGCTGTCAGGACGCTTTCAgccagcca > 1:1439513/1‑35 (MQ=255) cGATGAAATGCTGTCAGGACGCTTTCAgccagcca > 1:14151484/1‑35 (MQ=255) gATGAAATGCTGTCAGGACGCTTTCAGCCAGCCAc > 1:2582038/1‑35 (MQ=255) aTGAAATGCTGTCAGGACGCTTTCAGCCAGCCACg > 1:7016920/1‑35 (MQ=255) aTGAAATGCTGTCAGGACGCTTTCAGCCAGCCACg > 1:12133296/1‑35 (MQ=255) aTGAAATGCTGTCAGGACGCTTTCAGCCAGCCACg > 1:13635622/1‑35 (MQ=255) tGAAATGCTGTCAGGACGCTTTCAGCCAGCCACGc < 1:6675312/35‑1 (MQ=255) tGAAATGCTGTCAGGACGCTTTCAGCCAGCCACGc < 1:16200133/35‑1 (MQ=255) tGAAATGCTGTCAGGACGCTTTCAGCCAGCCACGc > 1:13321337/1‑35 (MQ=255) gAAATGCTGTCAGGACGCTTTCAGCCAGCCACGcc > 1:19497856/1‑35 (MQ=255) gAAATGCTGTCAGGACGCTTTCAGCCAGCCACGcc > 1:13785131/1‑35 (MQ=255) aaaTGCTGTCAGGACGCTTTCAGCCAGCCACGcta > 1:13042626/1‑33 (MQ=255) aaaTGCTGTCAGGACGCTTTCAGCCAGCCACGCCa > 1:15398054/1‑35 (MQ=255) aaTGCTGTCAGGACGCTTTCAGCCAGCCACGCCaa > 1:7928941/1‑35 (MQ=255) aaTGCTGTCAGGACGCTTTCAGCCAGCCACGCCaa > 1:11235852/1‑35 (MQ=255) aaTGCTGTCAGGACGCTTTCAGCCAGCCACGCCaa > 1:10457984/1‑35 (MQ=255) tGCTGTCAGGACGCTTTCAGCCAGCCACGCCAACa > 1:11110323/1‑35 (MQ=255) gCTGTCAGGACGCTTTCAGCCAGCCACGCCAACAt > 1:11398649/1‑35 (MQ=255) cTGTCAGGACGCTTTCAGCCAGCCACGCCAACAtt > 1:11466668/1‑35 (MQ=255) tGTCAGGACGCTTTCAGCCAGCCACGCCAACATTc > 1:8425408/1‑35 (MQ=255) tGTCAGGACGCTTTCAGCCAGCCACGCCAACATTc > 1:13554223/1‑35 (MQ=255) tGTCAGGACGCTTTCAGCCAGCCACGCCAACATTc > 1:2710158/1‑35 (MQ=255) tGTCAGGACGCTTTCAGCCAGCCACGCCAACATTc > 1:14894228/1‑35 (MQ=255) tGTCAGGACGCTTTCAGCCAGCCACGCCAAAATTc > 1:17619949/1‑35 (MQ=255) tCAGGACGCTTTCAGCCAGCCACGCCAACATTCCt > 1:4925054/1‑35 (MQ=255) cAGGACGCTTTCAGCCAGCCACGCCAACATTCCTc > 1:20195838/1‑35 (MQ=255) cAGGACGCTTTCAGCCAGCCACGCCAACATTCCTc > 1:11017227/1‑35 (MQ=255) gggACGCTTTCAGCCAGCCACGCCAACATTCCTCa < 1:19040767/34‑1 (MQ=255) aGGACGTTTTCACCCAGCCACGCCAACATTCCTCa < 1:1706468/35‑1 (MQ=37) aGGACGCTTTCAGCCAGCCACGCCAACATTCCTCa > 1:6527483/1‑35 (MQ=255) aGGACGCTTTCAGCCAGCCACGCCAACATTCCTCa > 1:16085355/1‑35 (MQ=255) ggACGCTTTCAGCCAGCCACGCCAACATTCCTCaa > 1:15773018/1‑35 (MQ=255) ggACGCTTCCAGCCAGCCACGCCAACATTCCTCaa < 1:245777/35‑1 (MQ=255) gACGCTTTCAGCCAGCCACGCCAACATTCCTCacc > 1:15350013/1‑33 (MQ=255) gACGCTTTCAGCCAGCCACGCCAACATTCCTCAAc > 1:2753555/1‑35 (MQ=255) ccGCTTTCACCCAGCCACGCCAACATTCCTCAACt < 1:3604297/34‑1 (MQ=255) aCGTTTTCACCCAGCCACGCCAACATTCCTCAACt < 1:5537152/35‑1 (MQ=37) aCGCTTTCAGCCAGCCACGCCAACATTCCTCAACt > 1:19102639/1‑35 (MQ=255) aCGCTTTCAGCCAGCCACGCCAACATTCCTCAACt > 1:8563865/1‑35 (MQ=255) aCGCTTTCAGCCAGCCACGCCAACATTCCTCAACt < 1:1166542/35‑1 (MQ=255) aCGCTTCCAGCCAGCCACGCCAACATTCCTCAACt < 1:4969669/35‑1 (MQ=255) cGCTTTCAGCCAGCCACGCCAACATTCCTCAACTg < 1:3320685/35‑1 (MQ=255) gCTTTCAGCCAGCCACGCCAACATTCCTCAACTGc > 1:16934220/1‑35 (MQ=255) gCTTTCAGCCAGCCACGCCAACATTCCTCAACTGc > 1:10641274/1‑35 (MQ=255) gCTTTCAGCCAGCCACGCCAACATTCCTCAACTGc > 1:13968420/1‑35 (MQ=255) gCTTTCAGCCAGCCACGCCAACATTCCTCAACTGc > 1:5974172/1‑35 (MQ=255) cttccgcccagccACGCCAACATTCCTCAACTGCg < 1:16941114‑M2/22‑1 (MQ=255) cttccacccagccACGCCAACATTCCTCAACTGCg < 1:3390100‑M2/22‑1 (MQ=255) tttcacccagccACGCCAACATTCCTCAACTGCgg < 1:4653510‑M2/23‑1 (MQ=255) tttcacccagccACGCCAACATTCCTCAACTGCgg < 1:1796549‑M2/23‑1 (MQ=255) tttCAGCCAGCCACGCCAACATTCCTCAACTGCgg > 1:6147632/1‑35 (MQ=255) tttCAGCCAGCCACGCCAACATTCCTCAACTGCgg > 1:10487140/1‑35 (MQ=255) ttccagccagccACGCCAACATTCCTCAACTGCgg < 1:12331768‑M2/23‑1 (MQ=255) ttccacccagccACGCCAACATTCCTCAACTGCgg < 1:16847028‑M2/23‑1 (MQ=255) ttCAGCCAGCCACGCCAACATTCCTCAACTGCgtt > 1:8034655/1‑33 (MQ=255) ttCAGCCAGCCACGCCAACATTCCTCAACTGCGGt < 1:2647006/35‑1 (MQ=255) ttCAGCCAGCCACGCAAACATTCCTCAACTGCGGt < 1:4562007/35‑1 (MQ=255) tccacccagccACGCCAACATTCCTCAACTGCGGt < 1:15557753‑M2/24‑1 (MQ=255) tCAGCCAGCCACGCCAACATTCCTCAACTGCGGTa > 1:12872319/1‑35 (MQ=255) tCAGCCAGCCACGCCAACATTCCTCAACTGCGGTa > 1:20292548/1‑35 (MQ=255) tCAGCCAGCCACGCCAACATTCCTCAACTGCGGTa > 1:19087775/1‑35 (MQ=255) ccagccagcCACGCCAACATTCCTCAACTGCGGTa < 1:15496316/34‑1 (MQ=255) ccagccagcCACGCCAACATTCCTCAACTGCGGTa < 1:8216039/34‑1 (MQ=255) ccacccagccACGCCAACATTCCTCAACTGCGGTa < 1:2896823‑M2/25‑1 (MQ=255) ccacccagccACGCCAACATTCCTCAACTGCGGTa < 1:4165843‑M2/25‑1 (MQ=255) nngccnnccaCGCCAACATTCCTCAACTGCGGTaa < 1:15712252/33‑1 (MQ=255) cagccagcCACGCCAACATTCCTCAACTGCGGTaa > 1:14222569/1‑35 (MQ=255) cacccagccACGCCAACATTCCTCAACTGCGGTaa < 1:13846632‑M2/26‑1 (MQ=255) cacccagccACGCCAACATTCCTCAACTGCGGTaa < 1:8977748‑M2/26‑1 (MQ=255) agccagccACGCCAACATTCCTCAACTGCGGTAag > 1:13371293/1‑35 (MQ=255) acccagccACGCCAACATTCCTCAACTGCGGTAag < 1:471338‑M2/27‑1 (MQ=255) gccagccaCGCCAACATTCCTCAACTGCGGTAagc > 1:7014367/1‑35 (MQ=255) gccagccaCGCCAACATTCCTCAACTGCGGTAagc > 1:4609784/1‑35 (MQ=255) cccagccACGCCAACATTCCTCAACTGCGGTAagc < 1:6177876‑M2/28‑1 (MQ=255) cccagccACGCCAACATTCCTCAACTGCGGTAagc < 1:10736242‑M2/28‑1 (MQ=255) cccagccACGCCAACATTCCTCAACTGCCGTAagc < 1:12697658‑M2/28‑1 (MQ=255) ccagccACGCCAACATTCCTCAACTGCGGTAagcn < 1:15732409‑M2/29‑1 (MQ=255) ccagccACGCCAACATTCCTCAACTGCGGTAagca < 1:6435942‑M2/29‑1 (MQ=255) ccagccACGCCAACATTCCTCAACTGCGGTAagca < 1:12441941‑M2/29‑1 (MQ=255) ccagccACGCCAACATTCCTCAACTGCGGTAagca < 1:14073691‑M2/29‑1 (MQ=255) cagccACGCCAACATTCCTCAACTGCGGTAagcag > 1:9511675‑M2/6‑35 (MQ=255) cagccACGCCAACATTCCTCAACTGCGGTAagcag > 1:4482718‑M2/6‑35 (MQ=255) cagccACGCCAACATTCCTCAACTGCGGTAagcag < 1:3964350‑M2/30‑1 (MQ=255) cagccACGCCAACATTCCTCAACTGCGGTAagcag < 1:3158460‑M2/30‑1 (MQ=255) gccACGCCAACATTCCTCAACTGCGTTAagcagca > 1:20065600‑M2/4‑35 (MQ=255) gccACGCCAACATTCCTCAACTGCGGTAagcagca < 1:7426445‑M2/32‑1 (MQ=255) gccACGCCAACATTCCTCAACTGCGGTAagcagca < 1:8057963‑M2/32‑1 (MQ=255) gccACGCCAACATTCCTCAACTGCGGTAagcagca < 1:8376519‑M2/32‑1 (MQ=255) gccACGCCAACATTCCTCAACTGCGGTAagcagca < 1:9380835‑M2/32‑1 (MQ=255) gccACGCCAACATTCCTCAACTGCGGTAagcagca < 1:12938985‑M2/32‑1 (MQ=255) ccACGCCAACATTCCTCAACTGCGGTAagcagcag < 1:2143897‑M2/33‑1 (MQ=255) ccACGCCAACATTCCTCAACTGCGGTAagcagcag > 1:20361811‑M2/3‑35 (MQ=255) caCGCCACCATTCCTCACCTGCGGTAagcagcagc < 1:3498512/35‑1 (MQ=37) cACGCCAACATTCCTCAACTGCTGTAagcagcagc > 1:17653050‑M2/2‑35 (MQ=255) cACGCCAACATTCCTCAACTGCGGTAagcagcagc < 1:3679970‑M2/34‑1 (MQ=255) cACCCCAACATTCCTCAACTGCGGTAagcagcagc < 1:4163973‑M2/34‑1 (MQ=255) aCGCCAACATTCCTCAACTGCGGTAAGCAGCAgcg < 1:16295717/35‑1 (MQ=255) | CGATGAAATGCTGTCAGGACGCTTTCAGCCAGCCACGCCAACATTCCTCAACTGCGGTAAGCAGCAGCG > REL606/2696546‑2696614 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |