Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,606,814 | G→A | 3.7% | A86A (GCG→GCA) | deoC → | deoxyribose‑phosphate aldolase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,606,814 | 0 | G→A | 3.7% | 2.7 ‑0.4 ‑0.1 | 134 | A86A (GCG→GCA) | deoC | deoxyribose‑phosphate aldolase |
Reads supporting (aligned to +/- strand): new base (2/3): ref base (73/56): total (75/59) | ||||||||||
Fisher's exact test strand distribution p-value = 6.54e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.62e-01 |
Only 100 of 158 total aligned reads displayed.
ACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTG > REL606/4606780‑4606848 | aCTTCCCACACGGTAACGATGACATCGAAATcgcg < 1:3880321/35‑1 (MQ=255) aCTTCCCACACGGTAACGATGACATCGAAATcgcg < 1:4835492/35‑1 (MQ=255) cTTCACACACGGTAACGATGACATCGAAATCgcgc < 1:2796320/35‑1 (MQ=255) ttCCCACACGGTAACGATGACATCGAAATCGCGCt > 1:17642076/1‑35 (MQ=255) ttCCCACACGGTAACGATGACATCGAAATCGCACt < 1:16366218/35‑1 (MQ=255) tCCCACACGGTAACGATGACATCGAAATCGCGCTg > 1:19881750/1‑35 (MQ=255) tCCCACACGGTAACGATGACATCGAAATCGCGCTg > 1:3850645/1‑35 (MQ=255) tCCCACACGGTAACGATGACATCGAAATCGCGCTg < 1:15466028/35‑1 (MQ=255) cccACACTGTAACGATGACATCGAAATCGCGCTgg < 1:16106837/35‑1 (MQ=255) cccACACGGTAACGATGACATCGAAATCGCGCTgg > 1:10212501/1‑35 (MQ=255) cccACACGGTAACGATGACATCGAAATCGCGCTgg > 1:8935200/1‑35 (MQ=255) cccACACGGTAACGATGACATCGAAATCGCGCTgg < 1:13907151/35‑1 (MQ=255) cccACACGGTAACGATGACATCGAAATCGCGCTgg < 1:621432/35‑1 (MQ=255) cccACACGGTAACGATGACATCGAAATCGCGCCgg > 1:1706282/1‑35 (MQ=255) cgacacGGTAACGATGACATCGAAATCGCGCTGGc < 1:5528533/33‑1 (MQ=255) ccACACGGTAACGATGACATCGAAATCGCGCTGGc > 1:15400068/1‑35 (MQ=255) cacgCGGTAACGATGACATCGAAATCGCGCTGGCa < 1:14267794/35‑1 (MQ=255) cacaCGGTAACGCTGACATCGAAATCGCGCTGGCa > 1:19942245/1‑35 (MQ=255) cacaCGGTAACGATGACATCGAAATCGCGCTGGCa < 1:13293619/35‑1 (MQ=255) acacGGTAACGATGACATCGAAATCGCGCTGGCAg > 1:1353848/1‑35 (MQ=255) acacGGTAACGATGACATCGAAATCGCGCTGGCAg > 1:4607626/1‑35 (MQ=255) cacGGTAACGATGACATCGAAATCGCGCTGGCAGa < 1:7878517/35‑1 (MQ=255) cacGGTAACGATGACATCGAAATCGCGCTGGCAGa < 1:8868122/35‑1 (MQ=255) acGGTAACGATGACATCGAAATCGCGCTGGCAGaa > 1:6564452/1‑35 (MQ=255) cGGTAACGATGACATCGAAATCGCGCTGGCAGaaa < 1:16890826/35‑1 (MQ=255) cGGTAACGATGACATCGAAATCGCGCTGGCAGaaa > 1:2067101/1‑35 (MQ=255) cGGTAACGATGACATCGAAATCGCGCTGGCAGaaa > 1:6600411/1‑35 (MQ=255) cGGTAACGATGACATCGAAATCGCGCTGGCAGaaa > 1:9143115/1‑35 (MQ=255) cGGTAACGATGACATCGAAATCGCGCTGGCAGaaa > 1:10072549/1‑35 (MQ=255) cGGTAACGATGACATCGAAATCGCGCTGGCAGaaa < 1:15053291/35‑1 (MQ=255) ngTAACGATGACATCGAAATCGCGCTGGCAGAAAc > 1:15952800/2‑35 (MQ=255) ggTAACGATGACATCGAAATCGCGCTGGCAGAAAc < 1:12415520/35‑1 (MQ=255) gTAACGATGACATCGAAATCGCGCTGGCAGAAAcc > 1:3995646/1‑35 (MQ=255) tAACGATGACATCGAAATCGCGCTGGCAGAAAccc > 1:14050382/1‑35 (MQ=255) aaCGATGACATCGAAATCGCGCTGGCAGAAACCCg < 1:19420494/35‑1 (MQ=255) aaCGATGACATCGAAATCGCGCTGGCAGAAACCCg < 1:17560166/35‑1 (MQ=255) aaCGATGACATCGAAATCGCGCTGGCAGAAACCCg > 1:6258311/1‑35 (MQ=255) aaCGATGACATCGAAATCGCGCTGGCAGAAACCCg > 1:6352990/1‑35 (MQ=255) aCGATGACATCGAAATCGCGCTGGCAGAAACCCGt < 1:12054596/35‑1 (MQ=255) aCGATGACATCGAAATCGCGCTGGCAGAAACCCGt > 1:11477586/1‑35 (MQ=255) aCGATGACATCGAAATCGCGCTGGCAGAAACCCGt > 1:12249940/1‑35 (MQ=255) aCGATGACATCGAAATCGCGCTGGCAGAAACCCGt > 1:10540212/1‑35 (MQ=255) aCGATGACATCGAAATCGCGCTGGCAGAAACCCGt < 1:2811125/35‑1 (MQ=255) cGATGACATCGAAATCGCGCTGGCAGAACCCCGTg < 1:9560211/35‑1 (MQ=255) cGATGACATCGAAATCGCGCTGGCAGAAACCCGTg < 1:14328853/35‑1 (MQ=255) cGATGACATCGAAATCGCGCTGGCAGAAACCCGTg < 1:20611069/35‑1 (MQ=255) cGATGACATCGAAATAGCGCTGGCAGAAACCCGTg < 1:9135962/35‑1 (MQ=255) gATGACATCGAAATCGCGCTGGCAGAAACCCGTGc > 1:7349709/1‑35 (MQ=255) gATGACATCGAAATCGCGCTGGCAGAAACCCGTGc < 1:9755501/35‑1 (MQ=255) gATGACATCGAAATCGCGCTGGCAGAAACCCGTGc > 1:15562459/1‑35 (MQ=255) aTGACATCGAAATCGCGCTGGCAGAAACCCGTGCg < 1:16581706/35‑1 (MQ=255) aTGACATCGAAATCGCGCTGGCAGAAACCCGTGCg > 1:16883901/1‑35 (MQ=255) aTGACATCGAAATCGCGCTGGCAGAAACCCGTGCg > 1:11491253/1‑35 (MQ=255) aTGACATCGAAATCGCGCTGGCAGAAACCCGTGCg > 1:4549715/1‑35 (MQ=255) aTGACATCGAAATCGCGCTGGCAGAAACCCGTGCg < 1:341919/35‑1 (MQ=255) tGACATCGAAATCGCGCTGGCAGAAACCCGTGCgg < 1:5899533/35‑1 (MQ=255) tGACATCGAAATCGCGCTGGCAGAAACCCGTGCgg < 1:5759694/35‑1 (MQ=255) tGACATCGAAATCGCGCTGGCAGAAACCCGTGCgg < 1:17558572/35‑1 (MQ=255) tGACATCGAAATCGCACTGGCAGAAACCCGTGCgg < 1:927692/35‑1 (MQ=255) gACATCGAAATCGCGCTGGCAGAAACCCGTGCGGc > 1:8549546/1‑35 (MQ=255) aCATCGAAATCGCGCTGGCAGAAACCCGTGCGGCa > 1:20220367/1‑35 (MQ=255) aCATCGAAATCGCGCTGGCAGAAACCCGTGCGGCa < 1:7947605/35‑1 (MQ=255) cATCGAAATCGCGCTGGCAGAAACCCGTGCGGCaa < 1:6095898/35‑1 (MQ=255) cATCGAAATCGCGCTGGCAGAAACCCGTGCGGCaa < 1:19651388/35‑1 (MQ=255) cATCGAAATCGCGCTGGCAGAAACCCGTGCGGCaa > 1:14173708/1‑35 (MQ=255) cATCGAAATCGCGCTGGCAGAAACCCGTGCGGCaa > 1:2485696/1‑35 (MQ=255) aTCGAAATCGCGCTGGCAGAAACCCGTGCGGCAAt < 1:17359452/35‑1 (MQ=255) aTCGAAATCGCGCTGGCAGAAACCCGTGCGGCAAt < 1:8061986/35‑1 (MQ=255) aTCGAAATCGCGCTGGCAGAAACCCGTGCGGCAAt < 1:8388088/35‑1 (MQ=255) aTCGAAATCGCGCTGGCAGAAACCCGTGCGGCAAt < 1:15657374/35‑1 (MQ=255) aTCGAAATCGCACTGGCAGAAACCCGTGCGGCAAt > 1:5978048/1‑35 (MQ=255) tCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATc > 1:5169901/1‑35 (MQ=255) tCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATc > 1:5298147/1‑35 (MQ=255) tCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATc < 1:6743457/35‑1 (MQ=255) tCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATc < 1:16748245/35‑1 (MQ=255) gcGAAATCGCGCTGGCAGAAACCCGTGCGGCAATc < 1:5412673/34‑1 (MQ=255) cGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCg > 1:6841613/1‑35 (MQ=255) cGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCg > 1:19754497/1‑35 (MQ=255) cGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCg > 1:18229060/1‑35 (MQ=255) gAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGc < 1:1934197/35‑1 (MQ=255) gAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGc > 1:3582863/1‑35 (MQ=255) gAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGc > 1:13509282/1‑35 (MQ=255) gAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGc > 1:2271345/1‑35 (MQ=255) gAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGc > 1:17435382/1‑35 (MQ=255) gAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGc > 1:11618036/1‑35 (MQ=255) aaaTCGCGCTGGCAGAAACCCGTGCGGCAATCGcc > 1:1291359/1‑35 (MQ=255) aaaTCGCGCTGGCAGAAACCCGTGCGGCAATCGcc > 1:15118582/1‑35 (MQ=255) aaTCGCGCTGGCAGAAACCCGTGCGGCAATCGCCt > 1:8867813/1‑35 (MQ=255) aTCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTa > 1:4252065/1‑35 (MQ=255) aTCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTa < 1:8407977/35‑1 (MQ=255) cgcgCTGGCAGAAACCCGTGCGGCAATCGCCTACg > 1:14999565/1‑35 (MQ=255) cgcgCTGGCAGAAACCCGTGCGGCAATCGCCTACg < 1:1189274/35‑1 (MQ=255) gcgcTGGCAGAAACCCGTGCGGCAATCGCCTACgg < 1:1068563/35‑1 (MQ=255) gcgcTGGCAGAAACCCGTGCGGCAATCGCCTACgg > 1:8747124/1‑35 (MQ=255) gcgcTGGCAGAAACCCGTGCGGCAATCGCCTACgg > 1:13239599/1‑35 (MQ=255) cgcTGGCAGAAACCCGTGCGGCAATCGCCTACggg > 1:432973/1‑34 (MQ=255) cgcTGGCAGAAACCCGTGCGGCAATCGCATACGGt < 1:17664439/35‑1 (MQ=255) gcTGGCAGAAACCCGTGCGGCAATCGCCTACGGTg < 1:12793523/35‑1 (MQ=255) gcTGGCAGAAACCCGTGCGGCAATCGCCTACGGTg > 1:12638577/1‑35 (MQ=255) gcTGGCAGAAACCCGTGCGGCAATCGCCTACGGTg > 1:20551116/1‑35 (MQ=255) | ACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTG > REL606/4606780‑4606848 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |