New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422591 =80 (0.780)9 (0.110) 4/38 NT 16.0% intergenic (‑278/+184) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter
?REL606 3002837 = 31 (0.380)coding (307/2517 nt) yeeR predicted membrane protein

ACGATTCAGCTAATGAGTCTTTATTTTCCCCCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/422627‑422591
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTG  >  REL606/3002837‑3002869
                                                                      
ACGATTCAGCTAATGAGTCTTTATTTTCCCCCCCA                                     >  1:19644290/1‑35
ACGATTCAGCTAATGAGTCTTTATTTTCCCCCCCA                                     <  1:817555/35‑1
 nGATTCAGCTAATGAGTCTTTATTTTCCCCCCCAC                                    >  1:15836821/2‑35
 CGATTCAGCTAATGAGTCTTTATTTTCCCCCCCAC                                    >  1:18011126/1‑35
 CGATTCAGCTAATGAGTCTTTATTTTCCCCCCCAC                                    >  1:15560677/1‑35
 CGATTCAGCTAATGAGTCTTTATTTTCCCCCCCAC                                    >  1:15147218/1‑35
  GATTCAGCTAATGAGTCTTTATTTTCCCCCCCACC                                   >  1:10535549/1‑35
  GATTCAGCTAATGAGTCTTTATTTTCCCCCCCACC                                   <  1:9170637/35‑1
  GATTCAGCTAATGAGTCTTTATTTTCCCCCCCACC                                   >  1:9026973/1‑35
  GATTCAGCTAATGAGTCTTTATTTTCCCCCCCACC                                   >  1:4748879/1‑35
  GATTCAGCTAATGAGTCTTTATTTTCCCCCCCACC                                   >  1:4957172/1‑35
  GATTCAGCTAATGAGTCTTTATTTTCCCCCCCACC                                   <  1:15359976/35‑1
  GATTCAGCTAATGAGTCTTTATTTTCCCCCCCACC                                   >  1:1234755/1‑35
  GATTCAGCTAATGAGTCTTTATTTTCCCCCCCACC                                   >  1:14703611/1‑35
  GATTCAGCTAATGAGTCTTTATTTTCCCCCCCACC                                   <  1:1436646/35‑1
  GATTCAGCTAATGAGTCTTTATTTTCCCCCCCACC                                   >  1:13457696/1‑35
  GATTCAGCTAATGAGTCTTTATTTTCCCCCCCACC                                   >  1:8085840/1‑35
                     ttTTTTCCCCCCCACCGCTCTCGCCGGTGGTCTGC                <  1:5885077/33‑1
                      tTTTTCCCCCCCACCGCTCTCGCCGGTGGTCTGCT               <  1:3051421/34‑1
                       TTTTCCCCCCCACCGCTCTCGCCGGTGGTCTGCTG              <  1:12077096/35‑1
                       TTTTCCCCCCCACCGCTCTCGCCGGTGGTCTGCTG              <  1:15597821/35‑1
                       TTTTCCCCCCCACCGCTCTCGCCGGTGGTCTGCTG              <  1:3741699/35‑1
                       TTTTCCCCCCCACCGCTCTCGCCGGTGGTCTGCTG              <  1:17314847/35‑1
                        TTTCCCCCCCACCGCTCTCGCAGGTGGTCTGCTGG             <  1:523962/35‑1
                         TTCCCCCCCACCGCTCTCGCCGGTGGTCTGCTGGC            <  1:18601162/35‑1
                          TCCCCCCCACCGCTCTCGCCGGTGGTCTGCTGGCT           <  1:5202221/35‑1
                           gCCCCCCACCGCGCTCGCCGGTGGTCTGCTGGCTG          <  1:11250385/34‑1
                            CCCCCCACCGCTCTCGCCGGTGGTCTGCTGGCTGT         <  1:17526147/35‑1
                            CCCCCCACCGCTCTCGCCGGTGGTCTGCTGGCTGT         <  1:6998721/35‑1
                            CCCCCCACCGCTCTCGCCGGTGGTCTGCTGGCTGT         <  1:5729844/35‑1
                            CCCCCCACCGCTCTCGCCGGTGGTCTGCTGGCTGT         <  1:4815654/35‑1
                             CCCCCACCGCTCTCGCCGGTGGTCTGCTGGCTGTT        <  1:2942602/35‑1
                              CCCCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTC       <  1:3698596/35‑1
                              CCCCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTC       <  1:4948007/35‑1
                                cccCCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCC     <  1:9458990/32‑1
                                CCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCC     <  1:15688254/35‑1
                                CCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCC     <  1:16657015/35‑1
                                CCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCC     <  1:17413320/35‑1
                                CCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCC     <  1:6219819/35‑1
                                CCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCC     <  1:12237246/35‑1
                                CCACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCC     <  1:885531/35‑1
                                 CACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCC    <  1:15661618/35‑1
                                  ACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCT   <  1:14025910/35‑1
                                  ACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCT   <  1:13937304/35‑1
                                  ACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCT   <  1:2340/35‑1
                                  ACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCT   <  1:19902738/35‑1
                                  ACCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCT   <  1:17521371/35‑1
                                   CCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTG  <  1:493070/35‑1
                                   CCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTG  <  1:13344278/35‑1
                                   CCGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTG  <  1:11648480/35‑1
                                                                      
ACGATTCAGCTAATGAGTCTTTATTTTCCCCCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/422627‑422591
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccGCTCTCGCCGGTGGTCTGCTGGCTGTTCCCCTG  >  REL606/3002837‑3002869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.