New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3476747 =59 (0.570)10 (0.120) 3/38 NT 12.0% coding (1924/2085 nt) malQ 4‑alpha‑glucanotransferase (amylomaltase)
?REL606 4031309 = 100 (1.230)coding (968/1374 nt) hemN coproporphyrinogen III oxidase

ACAGTGCTCTGTTAGGACTACAGCCGGAAGACTGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3476785‑3476747
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggGGATGGGCGTTTCCGCCATCAGCATGATTGGCGA  >  REL606/4031309‑4031342
                                                                         
ACAGTGCTCTGTTAGGACTACAGCCGGAAGACTGG                                        >  1:11154790/1‑35
ACAGTGCTCTGTTAGGACTACAGCCGGAAGACTGG                                        >  1:6330282/1‑35
ACAGTGCTCTGTTAGGACTACAGCCGGAAGACTGG                                        >  1:16537410/1‑35
ACAGTGCTCTGTTAGGACTACAGCCGGAAGACTGG                                        >  1:6028075/1‑35
ACAGTGCTCTGTTAGGACTACAGCCGGAAGACTGG                                        >  1:5975400/1‑35
 CAGTGCTCTGTTAGGACTACAGCCGGAAGACTGGC                                       >  1:7671493/1‑35
  AGTGCTCTGTTAGGACTACAGCCGGCAGACTGGCT                                      >  1:20475966/1‑35
  AGTGCTCTGTTAGGACTACAGCCGGAAGACTGGCT                                      >  1:8657366/1‑35
    TGCTCTGTTAGGACTACAGCCGGAAGACTGGCTGG                                    >  1:9641433/1‑35
    TGCTCTGTTAGGACTACAGCCGGAAGACTGGCTGG                                    >  1:9337670/1‑35
    TGCTCTGTTAGGACTACAGCCGGAAGACTGGCTGG                                    >  1:6219612/1‑35
    TGCTCTGTTAGGACTACAGCCGGAAGACTGGCTGG                                    >  1:19782764/1‑35
    TGCTCTGTTAGGACTACAGCCGGAAGACTGGCTGG                                    >  1:14210827/1‑35
     GCTCTGTTAGGACTACAGCCGGAAGACTGGCTGGG                                   >  1:18845470/1‑35
      CTCTGTTAGGACTACAGCCGGAAGACTGGCTGGGt                                  >  1:3882443/1‑34
      CTCTGTTAGGACTACAGCCGGAAGACTGGCTGGGt                                  >  1:7136299/1‑34
      CTCTGTTAGGACTACAGCCGGAAGACTGGCTGGGG                                  >  1:2989299/1‑35
       TCTGTTAGGGCTACAGCCGGAAGACTGGCTGGGGA                                 >  1:20467125/1‑35
       TCTGTTAGGACTACAGCCGGAAGACTGGCTGGGGg                                 >  1:3243865/1‑34
       TCTGTTAGGACTACAGCCGGAAGACTGGCTGGGGg                                 >  1:2647222/1‑34
       TCTGTTAGGACTACAGCCGGAAGACTGGCTGGGGA                                 >  1:16518220/1‑35
        CTGTTAGGACTACAGCCGGAAGACTGGCTGGGTAT                                >  1:15341984/1‑35
         TGTTAGGACTACAGCCGGAAGACTGGCTGGGTATt                               >  1:12543565/1‑34
          GTTAGGACTACAGCCGGAAGACTGGCTGGGTATGG                              >  1:14472036/1‑35
           TTAGGACTACAGCCGGAAGACTGGCTGGGTATGGG                             >  1:1880972/1‑35
           TTAGGACTACAGCCGGAAGACTGGCTGGGGATGGc                             >  1:4102755/1‑34
           TTAGGACTACAGCCGGAAGACTGGCTGGGGATGGG                             >  1:17322102/1‑35
            TAGGACTACAGCCGGAAGACTGGCTGGGTATGGGC                            >  1:10097268/1‑35
            TAGGACTACAGCCGGAAGACTGGCTGGGGATGGGC                            >  1:423611/1‑35
             AGGACTACAGCCGGAAGACTGGCTGGGTATGGGCG                           >  1:8840312/1‑35
             AGGACTACAGCCGGAAGACTGGCTGGGGATGGGCG                           >  1:9645660/1‑35
              GGACTACAGCCGGAAGACTGGCTGGGGATGGGggg                          >  1:17677823/1‑32
              GGACTACAGCCGGAAGACTGGCTGGGGATGGGagg                          >  1:18985076/1‑32
                                  GCTGGGGGTGGGCGTTTCCGCCATCAGCATGATTG      <  1:12365851/35‑1
                                  GCTGGGGATGGGCGTTTCCGCCATCAGCATGATTG      <  1:16760619/35‑1
                                  GCTGGGGATGGGCGTTTCCGCCATCAGCATGATTG      <  1:13540746/35‑1
                                  GCTGGGGATGGGCGTTTCCGCCATCAGCATGATTG      <  1:11434616/35‑1
                                  GCTGGGGATGGGCGTTTCCGCCATCAGCATGATTG      <  1:17939576/35‑1
                                  GCTGGGGATGGGCGTTTCCGCCATCAGCATGATTG      <  1:18170750/35‑1
                                  GCTGGGGATGGGCGTTTCCGCCATCAGCATGATTG      >  1:18003434/1‑35
                                  GCTGGGGAGGGGCGTTTCCGCCATCAGCATGATTG      <  1:6805592/35‑1
                                   CTGGGGATGGGCGTTTCCGCCATCAGCATGATTGG     >  1:11717381/1‑35
                                   CTGGGGATGGGCGTTTCCGCCATCAGCATGATTGG     <  1:12285082/35‑1
                                   CTGGGGATGGGCGTTTCCGCCATCAGCATGATTGG     <  1:10215438/35‑1
                                   CTGGGGATGGGCGTTTCCGCCATCAGCATGATTGG     >  1:4198800/1‑35
                                   CTGGGGATGGGCGTTTCCGCCATCAGCATGATTGG     >  1:15946762/1‑35
                                   CTGGGGATGGGCGTTTCCGCCATCAGCATGATTGG     >  1:19712449/1‑35
                                    TGGGGATGGGCGTTTCCGCCATCAGCATGATTGGC    >  1:7745108/1‑35
                                    TGGGGATGGGCGTTTCCGCCATCAGCATGATTGGC    <  1:20047270/35‑1
                                    TGGGGATGGGCGTTTCCGCCATCAGCATGATTGGC    <  1:20292924/35‑1
                                    TGGGGATGGGCGTTTCCGCCATCAGCATGATTGGC    >  1:12564281/1‑35
                                    TGGGGATGGGCGTTTCCGCCATCAGCATGATTGGC    >  1:5009586/1‑35
                                    TGGGGATGGGCGTTTCCGCCATCAGCATGATTGGC    <  1:17236676/35‑1
                                    TGGGGATGGGCGTTTCCGCCATCAGCATGATTGGC    >  1:17165972/1‑35
                                    TGGGGATGGGCGTTTCCGCCATCAGCATGATTGGC    >  1:16912456/1‑35
                                    TGGGGATGGGCGCTTCCGCCATCAGCATGATTGGC    >  1:18756640/1‑35
                                     GGGGATGGGCGTTTCCGCCATCAGCATGATTGGCG   >  1:13502089/1‑35
                                     GGGGATGGGCGTTTCCGCCATCAGCATGATTGGCG   >  1:13022765/1‑35
                                     GGGGATGGGCGTTTCCGCCATCAGCATGATTGGCG   >  1:16973424/1‑35
                                     GGGGATGGGCGTTTCCGCCATCAGCATGATTGGCG   >  1:18092888/1‑35
                                     GGGGATGGGCGTTTCCGCCATCAGCATGATTGGCG   >  1:9866093/1‑35
                                      GGGATGGGCGTTTCCGCCATCAGCATGATTGGCta  >  1:17844091/1‑33
                                      GGGATGGGCGTTTCCGCCATCAGCATGATTGGCGA  >  1:5200193/1‑35
                                      GGGATGGGCGTTTCCGCCATCAGCATGATTGGCGA  <  1:19879455/35‑1
                                      GGGATGGGCGTTTCCGCCATCAGCATGATTGGCGA  <  1:19661742/35‑1
                                      GGGATGGGCGTTTCCGCCATCAGCATGATTGGCGA  <  1:18460062/35‑1
                                                                         
ACAGTGCTCTGTTAGGACTACAGCCGGAAGACTGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3476785‑3476747
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggGGATGGGCGTTTCCGCCATCAGCATGATTGGCGA  >  REL606/4031309‑4031342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.