Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,420,709 +GA :: IS3 (+) +4 bp 14.6% intergenic (+21/‑9) ynaK → / → ECB_01341 conserved protein/hypothetical protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1420709 =60 (0.780)11 (0.120) 10/44 NT 13.0% intergenic (+21/‑12) ynaK/ECB_01341 conserved protein/hypothetical protein
?REL606 = 1443893 NA (NA)noncoding (1255/1255 nt) IS3 repeat region
* ? REL606 = 142071269 (0.810)11 (0.110) 11/46 NT 12.2% intergenic (+24/‑9) ynaK/ECB_01341 conserved protein/hypothetical protein
?REL606 1607918 = NA (NA)coding (15/1320 nt) ECB_01510 putative tail component of prophage

TCGCAGCAATAAAAAAGGCCACCCGAAGGTAGCCtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1420742‑1420709
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  REL606/1443893‑1443858
                                                                      
TCGCAGCAATAAAAAAGGCCACCCGAAGGTAGCCT                                     <  1:10334803/35‑1
TCGCAGCAATAAAAAAGGCCACCCGAAGGTAGCCT                                     >  1:16723613/1‑35
TCGCAGCAATAAAAAAGGCCACCCGAAGGTAGCCT                                     <  1:777406/35‑1
TCGCAGCAATAAAAAAGGCCACCCGAAGGTAGCCT                                     <  1:15246881/35‑1
TCGCAGCAATAAAAAAGGCCACCCGAAGGTAGCCT                                     <  1:2303163/35‑1
 CGCAGCAATAAAAAAGGCCACCCGAAGGTAGCCTG                                    <  1:7326418/35‑1
 CGCAGAAATAAAAAAGGCCACCCGAAGGTAGCCTN                                    <  1:7947799/35‑1
  GCAGCAATAAAAAAGGCCACCCGAAGGTAGCCTGA                                   >  1:18539655/1‑35
  GCAGCAATAAAAAAGGCCACCCGAAGGTAGCCTGA                                   >  1:7127080/1‑35
     GCAATAAAAAAGGCCACCCGAAGGTAGCCTGATCC                                <  1:14869056/35‑1
        ATAAAAAAGGCCACCCGAAGGTAGCCTGATCCTAC                             <  1:10082081/35‑1
           AAAAAGGCCACCCGAAGGTAGCCTGATCCTACCCA                          <  1:13378089/35‑1
            AAAAGGCCCCCCGAAGGTAGCCTGATCCTACCCAC                         <  1:6506581/35‑1
            AAAAGGCCACCCGAAGGTAGCCTGATCCTACCCAC                         >  1:4195193/1‑35
             AAAGGCCCCCCGAAGGTAGCCTGATCCTACCCACG                        <  1:19310640/35‑1
                 GCCACCCGAAGGTAGCCTGATCCTACCCACGTAAT                    >  1:3548724/1‑35
                  CCACCCGAAGGTAGCCTGATCCTACCCACGTAATA                   <  1:3920792/35‑1
                     CCCGAAGGTAGCCTGATCCTACCCACGTAATATGG                >  1:12725740/1‑35
                     CCCGAAGGTAGCCTGATCCTACCCACGTAATATGG                >  1:19998679/1‑35
                      CCGAAGGTAGCCTGATCCTACCCACGTAATATGGA               >  1:8243402/1‑35
                         AAGGTAGCCTGATCCTACCCACGTAATATGGACAC            >  1:16358749/1‑35
                                 nTGATCCTACCCACGTAATATGGACACAGGCCTAA    >  1:1843248/2‑35
                                 CTGATCCTACCCGCGTAATATGGACACAGGCCTAA    <  1:846702/35‑1
                                 CTGATCCTACCCACGTAATATGGACACAGGCCTAA    <  1:3657377/35‑1
                                 CTGATCCTACCCACGTAATATGGACACAGGCCTAA    >  1:3249249/1‑35
                                 CTGATCCTACCCACGTAATATGGACACAGGCCTAA    >  1:270751/1‑35
                                 CTGATCCTACCCACGTAATATGGACACAGGCCTAA    >  1:4997309/1‑35
                                 CTGATCCTACCCACGTAATATGGACACAGGCCTAA    >  1:2099639/1‑35
                                 CTGATCCTACCCACGTAATATGGACACAGGCCTAA    >  1:9492621/1‑35
                                 CTGATCCTACCCACGTAATATGGACACAGGCCTAA    >  1:10688580/1‑35
                                 CTGATCCTACCCACGTAATATGGACACAGGCCTAA    <  1:16785604/35‑1
                                 CTGATCCTACCCACGTAATATGGACACAGGCCTAA    <  1:14446718/35‑1
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   >  1:14255265/1‑35
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   <  1:5392390/35‑1
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   <  1:5507841/35‑1
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   <  1:5891223/35‑1
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   <  1:2841123/35‑1
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   >  1:13861848/1‑35
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   >  1:14960661/1‑35
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   >  1:20523907/1‑35
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   >  1:15890668/1‑35
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   >  1:11723888/1‑35
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   <  1:11002238/35‑1
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   >  1:19599286/1‑35
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   >  1:19199398/1‑35
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   >  1:8625241/1‑35
                                  TGATCCTACCCACGTAATATGGACACAGGCCTAAG   <  1:18522724/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGTCTAAGC  >  1:4179088/1‑35
                                   GATCCTACCCACGTAATATGGACACAGGCCTACGC  >  1:4263355/1‑35
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:11798652/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:1364721/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:6379146/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  >  1:10886969/1‑35
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  >  1:10781133/1‑35
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  >  1:14201708/1‑35
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  >  1:4760026/1‑35
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:14206982/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:3580950/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:14480682/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:3489920/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:14578057/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:14743777/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:14930065/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:20331146/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:2028011/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:19845567/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  >  1:197837/1‑35
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:19323859/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:16040275/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:18606991/35‑1
                                   GATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  1:17907441/35‑1
                                                                      
TCGCAGCAATAAAAAAGGCCACCCGAAGGTAGCCtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1420742‑1420709
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGATCCTACCCACGTAATATGGACACAGGCCTAAGC  <  REL606/1443893‑1443858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.