New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3331631 =78 (0.760)5 (0.070) 4/34 NT 9.4% coding (257/975 nt) yhdH predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding
?REL606 = 4600665 41 (0.560)coding (36/606 nt) osmY periplasmic protein

Only 100 of 132 total aligned reads displayed.

CCGCGTTTTCATGCCGGTCAGGAGGTGTTACTCACTGGCTGGGGCGTTGGTGAAAACCACTGGGGTGGG  >  REL606/3331597‑3331665
                                  |                                  
ccGCGTTTTCATGCCGGTCAGGAGGTGTTACTCAc                                    <  1:20209357/35‑1 (MQ=255)
ccGCGTTTTCATGCCGGTCAGGAGGTGTTACTCAc                                    <  1:19114928/35‑1 (MQ=255)
 cgcgTTTTCATGCCGGTCAGGAGGTGTTACTCAct                                   <  1:459364/35‑1 (MQ=255)
 cgcgTTTTCATGCCGGTCAGGAGGTGTTACTCAct                                   <  1:9670853/35‑1 (MQ=255)
 cgcgTTTTCATGCCGGTCAGGAGGTGTTACTCAct                                   <  1:3901388/35‑1 (MQ=255)
 cgcgTTTTCATGCCGGTCAGGAGGTGTTACTCAct                                   <  1:18534849/35‑1 (MQ=255)
 cgcgTTTTCATGCCGGTCAGGAGGTGTTACTCAct                                   <  1:1160443/35‑1 (MQ=255)
 cgcgTTTTCATGCCGGTCAGGAGGTGTTACTCAct                                   <  1:17450921/35‑1 (MQ=255)
  gcgTTTTCATGCCGGTCAGGAGGTGTTACTCActg                                  <  1:7028633/35‑1 (MQ=255)
  gcgTTTTCATGCCGGTCAGGAGGTGTTACTCActg                                  <  1:17213424/35‑1 (MQ=255)
  gcgTTTTCATGCCGGTCAGGAGGTGTTACTCActg                                  <  1:15540364/35‑1 (MQ=255)
   cgTTTTCATGCCGGTCAGGAGGTGTTACTCActgg                                 <  1:5681479/35‑1 (MQ=255)
   cgTTTTCATGCCGGTCAGGAGGTGTTACTCActgg                                 >  1:4284241/1‑35 (MQ=255)
   cgTTTTCATGCCGGTCAGGAGGTGTTACTCActgg                                 <  1:4239680/35‑1 (MQ=255)
   cgTTTTCATGCCGGTCAGGAGGTGTTACTCActgg                                 >  1:3926521/1‑35 (MQ=255)
   cgTTTTCATGCCGGTCAGGAGGTGTTACTCActgg                                 <  1:12419213/35‑1 (MQ=255)
   cgTTTTCATGCCGGTCAGGAGGTGTTACTCActgg                                 <  1:6461556/35‑1 (MQ=255)
   cgTTTTCATGCCGGTCAGGAGGTGTTACTCActgg                                 <  1:12321527/35‑1 (MQ=255)
    gTTTTCATGCCGGTCAGGAGGTGTTACTCActggc                                >  1:10928870/1‑35 (MQ=255)
    gTTTTCATGCCGGTCAGGAGGTGTTACTCActggc                                >  1:765445/1‑35 (MQ=255)
    gTTTTCATGCCGGTCAGGAGGTGTTACTCActggc                                <  1:19768764/35‑1 (MQ=255)
    gTTTTCATGCCGGTCAGGAGGTGTTACTCActggc                                >  1:14356757/1‑35 (MQ=255)
    gTTTTCATGCCGGTCAGGAGGTGTTACTCActggc                                <  1:16328646/35‑1 (MQ=255)
    gTTTTCATGCCGGTCAGGAGGTGTTACTCActggc                                >  1:15955043/1‑35 (MQ=255)
     ttttCATGCCGGTCAGGAGGTGTTACTCActggct                               >  1:4481693/1‑35 (MQ=255)
     ttttCATGCCGGTCAGGAGGTGTTACTCActggct                               <  1:19914913/35‑1 (MQ=255)
     ttttCATGCCGGTCAGGAGGTGTTACTCActggct                               <  1:1973570/35‑1 (MQ=255)
     ttttCATGCCGGTCAGGAGGTGTTACTCActggct                               <  1:17216715/35‑1 (MQ=255)
     ttttCATGCCGGTCAGGAGGTGTTACTCActggct                               >  1:8917888/1‑35 (MQ=255)
      tttCATGCCGGTCAGGAGGTGTTACTCActggctg                              >  1:2443944/1‑35 (MQ=255)
      tttCATGCCGGTCAGGAGGTGTTACTCActggctg                              <  1:19822001/35‑1 (MQ=255)
      tttCATGCCGGTCAGGAGGTGTTACTCActggctg                              <  1:19742915/35‑1 (MQ=255)
      tttCATGCCGGTCAGGAGGTGTTACTCActggctg                              <  1:18173719/35‑1 (MQ=255)
       ttCATGCCGGTCAGGAGGTGTTACTCActggctgg                             >  1:2128767/1‑35 (MQ=255)
       ttCATGCCGGTCAGGAGGTGTTACTCActggctgg                             >  1:20319348/1‑35 (MQ=255)
       ttCATGCCGGTCAGGAGGTGTTACTCActggctgg                             >  1:11680710/1‑35 (MQ=255)
       ttCATGCCGGTCAGGAGGTGTTACTCActggctgg                             <  1:9261120/35‑1 (MQ=255)
        tCATGCCGGTCAGGAGGTGTTACTCACTGGCTggg                            <  1:1033393/35‑1 (MQ=255)
        tCATGCCGGTCAGGAGGTGTTACTCACTGGCTggg                            <  1:7686201/35‑1 (MQ=255)
         cATGCCGGTCAGGAGGTGTTACTCACTGGCTgggg                           >  1:377801/1‑35 (MQ=255)
          aTGCCGGTCAGGAGGTGTTACTCACTGGCTggggg                          >  1:18589787/1‑34 (MQ=255)
          aTGCCGGTCAGGAGGTGTTACTCACTGGCTggggg                          >  1:7477549/1‑34 (MQ=255)
          aTGCCGGTCAGGAGGTGTTACTCACTGGCTggggg                          >  1:9050881/1‑34 (MQ=255)
          aTGCCGGTCAGGAGGTGTTACTCACTGGCTGGGGc                          <  1:9412053/35‑1 (MQ=255)
          aTGCCGGTCAGGAGGTGTTACTCACTGGCTGGGGc                          <  1:1078809/35‑1 (MQ=255)
           tGCCGGTCAGGAGGTGTTACTCACTGGCTgggggg                         >  1:7713313/1‑33 (MQ=255)
           tGCCGGTCAGGAGGTGTTACTCACTGGCTGGGGCg                         >  1:5710910/1‑35 (MQ=255)
           tGCCGGTCAGGAGGTGTTACTCACTGGCTGGGGCg                         >  1:7573419/1‑35 (MQ=255)
            gacGGTCAGGAGGTGTTACTCACTGGCTGGGGCGt                        <  1:10168301/33‑1 (MQ=255)
            gCCGGTCAGGAGGTGTTACTAACTGGCTGGGGCGt                        <  1:4689393/35‑1 (MQ=255)
            actgaagatttcgaaaactctgCTGgctggggtgg                        <  1:13832297‑M1/13‑4 (MQ=255)
             ctgaagatttcgaaaactctgCTGGCTGGGGGGtt                       <  1:2823997‑M1/14‑1 (MQ=255)
             ccGGTCAGGAGGTGTTACTCACTGGCTGGGGCGtt                       <  1:9639250/35‑1 (MQ=255)
             ccGGTCAGGAGGTGTTACTCACTGGCTGGGGCGtt                       <  1:8735921/35‑1 (MQ=255)
             ccGGTCAGGAGGTGTTACTCACTGGCTGGGGCGtt                       <  1:13064480/35‑1 (MQ=255)
              cGGTCAGGAGGTGTTACTCACTGGCTGGGGCGTTg                      <  1:7222814/35‑1 (MQ=255)
              cGGTCAGGAGGTGTTACTCACTGGCTGGGGCGTTg                      <  1:9172001/35‑1 (MQ=255)
              cGGTCAGGAGGTGTTACTCACTGGCTGGGGCGTTg                      <  1:15427554/35‑1 (MQ=255)
               ggTCAGGAGGTGTTACTCACTGGCTGGGGGGGTgg                     >  1:13845193/1‑35 (MQ=37)
               ggTCAGGAGGTGTTACTCACTGGCTGGGGGGGTgg                     >  1:1855502/1‑35 (MQ=37)
               ggTCAGGAGGTGTTACTCACTGGCTGGGGCGTTgg                     <  1:7440195/35‑1 (MQ=255)
               ggTCAGGAGGTGTTACTCACTGGCTGGGGCGTTgg                     <  1:10982437/35‑1 (MQ=255)
               gaagatttcgaaaactctgCTGGCTGGGGTGTtgt                     <  1:2733801‑M1/16‑2 (MQ=255)
               gaagatttcgaaaactctgCTGGCTGGGGGGTTgg                     <  1:7307249‑M1/16‑1 (MQ=255)
                gTCAGGAGGTGTTACTCACTGGCTGGGGCGTTGGt                    <  1:13473327/35‑1 (MQ=255)
                gTCAGGAGGTGTTACTCACTGGCTGGGGCGTTGGt                    <  1:11578664/35‑1 (MQ=255)
                gTCAGGAGGTGTTACTCACTGGCTGGGGCGTTGGt                    <  1:12249090/35‑1 (MQ=255)
                aagatttcgaaaactctgCTGGCTGGGGCGTCGGt                    <  1:2358331‑M1/17‑1 (MQ=255)
                 tCAGGAGGTGTTACTCACTGGCTGGGGCGTTGGTg                   <  1:12729075/35‑1 (MQ=255)
                 tCAGGAGGTGTTACTCACTGGCTGGGGCGTTGGTg                   <  1:17740205/35‑1 (MQ=255)
                  cAGGAGGTGTTACTCACTGGCTGGGGCGTTGGTGa                  <  1:6368752/35‑1 (MQ=255)
                  cAGGAGGTGTTACTCACTGGCTGGGGCGTTGGTGa                  <  1:8431002/35‑1 (MQ=255)
                   aggaggTGTTACTCACTGGCTGGGGGGGTGGGGaa                 >  1:10332257/1‑35 (MQ=25)
                   aggaggTGTTACTCACTGGCTGGGGCGTTGGTGaa                 <  1:9792753/35‑1 (MQ=255)
                    ggaggTGTTACTCACTGGCTGGGGCGTTGGTGaaa                <  1:19707283/35‑1 (MQ=255)
                     gaggTGTTACTCACTGGCTGGGGGGGTGGGGaaaa               >  1:5975657/1‑35 (MQ=25)
                     gaggTGTTACTCACTGGCTGGGGCGTTGGTGaaaa               <  1:6150820/35‑1 (MQ=255)
                     gaggTGTTAATCACTGGCTGGGGCGTTGGTGaaaa               <  1:15785723/35‑1 (MQ=255)
                      aggTGTTACTCACTGGCTGGGGGGGTGGTGAAAAc              >  1:17422496/1‑35 (MQ=37)
                      aggTGTTACTCACTGGCTGGGGCGTTGGTGAAAAc              <  1:3621830/35‑1 (MQ=255)
                      aggTGTTACTCACTGGCTGGGGCGTTGGTGAAAAc              <  1:1128947/35‑1 (MQ=255)
                          gtTACTCACTGGCTGGGGCGTTGGTGAAAACCACt          <  1:7615491/35‑1 (MQ=255)
                          gtTACTCACTGGCTGGGGCGTTGGTGAAAACCACt          <  1:14059648/35‑1 (MQ=255)
                           ttACTCACTGGCTGGGGCGTTGGTGAAAACCACTg         <  1:20503173/35‑1 (MQ=255)
                            tACTCACTGGCTGGGGCGTTGGTGAAAACCACTgg        <  1:10772392/35‑1 (MQ=255)
                            tACTCACTGGCTGGGGCGTTGGTGAAAACCACTgg        <  1:10779308/35‑1 (MQ=255)
                            tACTCACTGGCTGGGGCGTTGGTGAAAACCACTgg        <  1:9319763/35‑1 (MQ=255)
                             aCTCACTGGCTGGGGCGTTGGTGAAAACCACTggg       <  1:13013151/35‑1 (MQ=255)
                             aCTCACTGGCTGGGGCGTTGGTGAAAACCACTggg       <  1:14981119/35‑1 (MQ=255)
                              cTCACTGGCTGGGGCGTTGGTGAAAACCACTgggg      <  1:5981945/35‑1 (MQ=255)
                               tCACTGGCTGGGGCGTTGGTGAAAACCACTGGGGt     <  1:3908210/35‑1 (MQ=255)
                               tCACTGGCTGGGGCGTTGGTGAAAACCACTGGGGt     <  1:1531053/35‑1 (MQ=255)
                               tCACTGGCTGGGGCGTTGGTGAAAACCACTGGGGt     <  1:1523622/35‑1 (MQ=255)
                                 aCTGGCTGGGGCGTTGGTGAAAACCACTGGGGTgg   <  1:4120451/35‑1 (MQ=255)
                                 aCTGGCTGGGGCGTTGGTGAAAACCACTGGGGCgg   <  1:5183014/35‑1 (MQ=255)
                                 aCTGGCTGGGGCATTGGTGAAAACCACTGGGGTgg   <  1:6536690/35‑1 (MQ=255)
                                  CTGGCTGGGGCGTTGGTGAAAACCACTGGGGTggg  <  1:8281061‑M1/35‑1 (MQ=255)
                                  CTGGCTGGGGCGTTGGTGAAAACCACTGGGGTggg  <  1:20151774‑M1/35‑1 (MQ=255)
                                  CTGGCTGGGGCGTTGGTGAAAACCACTGGGGTggg  <  1:3450504‑M1/35‑1 (MQ=255)
                                  CTGGCTGGGGCGTTGGTGAAAACCACTGGGGTggg  >  1:10073672‑M1/1‑35 (MQ=255)
                                  |                                  
CCGCGTTTTCATGCCGGTCAGGAGGTGTTACTCACTGGCTGGGGCGTTGGTGAAAACCACTGGGGTGGG  >  REL606/3331597‑3331665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.