New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2880569 =60 (0.580)11 (0.140) 4/36 NT 19.1% coding (101/1230 nt) yqeG predicted transporter
?REL606 3287064 = 48 (0.620)coding (1197/2337 nt) arcB hybrid sensory histidine kinase in two‑component regulatory system with ArcA

CGACCAGAGCAGTAATAAACAGGACCACAGCCCCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2880607‑2880569
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT  >  REL606/3287064‑3287097
                                                                         
ccACCAGAGCAGTAATAAACAGGACCACAGCCCCT                                        >  1:7820264/3‑35
CGACCAGAGCAGTAATAAACAGGAACACAGCCCCT                                        >  1:4790928/1‑35
 GACCAGAGCAGTAATAAACAGGACCACAGCCCCTG                                       >  1:5221244/1‑35
 GACCAGAGCAGTAATAAACAGGACCACAGCCCCTG                                       >  1:14736254/1‑35
 GACCAGAGCAGTAATAAACAGGACCACAGCCCCTG                                       >  1:8247438/1‑35
 GACCAGAGCAGTAATAAACAGGACCACAGCCCCTG                                       >  1:20404895/1‑35
   CCAGAGCAGTAATAAACAGGACCACAGCCCCTGCC                                     >  1:10643793/1‑35
    CAGAGCAGTAATAAACAGGACCACAGCCCCTGCCG                                    >  1:15725580/1‑35
    CAGAGCAGTAATAAACAGGACCACAGCCCCTGCCG                                    >  1:16510414/1‑35
    CAGAGCAGTAATAAACAGGACCACAGCCCCTGCCG                                    >  1:19284041/1‑35
                      tcCCACAGCCCCTGCCGTAAACGCGTCCCGTCGGT                  <  1:2308832/33‑1
                      tcCCACAGCCCCTGCCGTAAACGCGTCCCGTCGGT                  <  1:11471076/33‑1
                      ccCCACAGCCCCTGCCGTAAACGCGTCCCGTCGGT                  <  1:15978071/33‑1
                       cCCACAGGCCCTGCCGTAAACGCGTCCCGTCGGTA                 <  1:15580750/34‑1
                        cccCAGCCCCTGCCGTAAACGCGTCCCGTCGGTAA                <  1:12764582/32‑1
                        CCACAGCCCCTGCCGTAAACGCGTCCCGTCGGTAA                <  1:3544434/35‑1
                         ccCAGCCCCTGCCGTAAACGCGTCCCGTCGGTAAT               <  1:6864622/33‑1
                         CACAGCCCCTGCCGTAAACGCGTCCCGTCGGTAAT               <  1:5312267/35‑1
                          cCAGCCCCTGCCGTAAACGCGTCCCGTCGGTAATG              <  1:52181/34‑1
                          ACAGCCCCTGCCGTAAACGCGTCCCGTCGGTAATG              <  1:16954208/35‑1
                           ggGCCCCTGCCGTAAACGCGTCCCGTCGGTAATGA             <  1:18002285/33‑1
                           cgGCCCCTGCCGTAAACGCGTCCCGTCGGTAATGA             <  1:1350822/33‑1
                           CAGCCCCTGCCGTAAACGCGTCCCGTCGGTAATGA             <  1:12085552/35‑1
                            ggtCCCTGCCGTAAACGCGTCCCGTCGGTAATGAC            <  1:6724584/32‑1
                            AGCCCCTGCCGTAAACGCGTCCCGTCGGTAATGAC            <  1:15025485/35‑1
                               CCCTGCCGTAAACGCGTCCCGTCGGTAATGACCTG         <  1:15579451/35‑1
                               CCCTGCCGTAAACGCGTCCCGTCGGTAATGACCTG         <  1:20347724/35‑1
                               CCCTGCCGTAAACGCGTCCCGTCGGTAATGACCTG         <  1:2335118/35‑1
                                CCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGA        <  1:11398269/35‑1
                                CCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGA        <  1:18274853/35‑1
                                 CTGCCGTAAACGCGTCCCGTCGTTAATGACCTGAT       >  1:18477769/1‑35
                                 CTGCCGTAAACGCGTCCCGTCGGTAATGACCTGAT       <  1:12452400/35‑1
                                 CTGCCGTAAACGCGTCCCGTCGGTAATGACCTGAT       <  1:4450937/35‑1
                                 CTGCCGTAAACGCGTCCCGTCGGTAATGACCTGAT       <  1:11907427/35‑1
                                 CTGCCGTAAACGCGTCCCGTCGGTAATGACCCGAT       >  1:14437258/1‑35
                                 CTGCCGTAAACGCGTCCCGTCGGGAATGACCTGAT       >  1:4857428/1‑35
                                  TGCCGTAAACGCGTCCCGTCGGTAATGACCTGATG      <  1:12790138/35‑1
                                  TGCCGTAAACGCGTCCCGTCGGTAATGACCTGATG      <  1:20391470/35‑1
                                  TGCCGTAAACGCGTCCCGTCGGGAATGACCTGATG      >  1:6204887/1‑35
                                    CCGTAAACGCGTCCCGTCGGTAATGACCTGATGCG    >  1:418492/1‑35
                                    CCGTAAACGCGTCCCGTCGGGAATGACCTGATGCG    >  1:12715676/1‑35
                                    CCGTAAACGCGTCCCGTCGGGAATGACCTGATGCG    >  1:16058615/1‑35
                                     CGTAAACGCGTCCCGTCGGTAATGACCTGATGCGG   <  1:18605720/35‑1
                                      GTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT  <  1:835696/35‑1
                                      GTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT  >  1:6788530/1‑35
                                      GTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT  <  1:6005754/35‑1
                                      GTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT  <  1:2000805/35‑1
                                      GTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT  <  1:1905398/35‑1
                                      GTAAACGCGTCCCGTCGGGAATGACCTGATGCGGg  >  1:8002158/1‑34
                                                                         
CGACCAGAGCAGTAATAAACAGGACCACAGCCCCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2880607‑2880569
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgTAAACGCGTCCCGTCGGTAATGACCTGATGCGGT  >  REL606/3287064‑3287097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.