New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1494073 =76 (0.740)15 (0.170) 7/42 NT 16.6% coding (657/1062 nt) yncE hypothetical protein
?REL606 4351442 = 84 (0.930)intergenic (+50/‑88) groEL/yjeI chaperonin GroEL/hypothetical protein

Only 100 of 135 total aligned reads displayed.

TGATTACCATCGACACCGCCGACAATAAAATCCTCAGCCGTAAAAAGCTGCTGGATGACGGCAAAGAGC  >  REL606/1494039‑1494107
                                  |                                  
tGATTACCATCGACACCGCCGACAATAAAATCCTc                                    >  1:17000170/1‑35 (MQ=255)
tGATTACCATCGACACCGCCGACAATAAAATCCTc                                    >  1:19774542/1‑35 (MQ=255)
cttatactagaaagatgaccaaaagaaaaaccccc                                    >  1:19414826‑M1/35‑35 (MQ=255)
cttatactagaaagatgaccaaaagaaaaaccccc                                    <  1:16320942‑M1/1‑1 (MQ=255)
 ttatactagaaagatgaccaaaagaaaaaccccCa                                   <  1:552994‑M1/2‑1 (MQ=255)
 ttatactagaaagatgaccaaaagaaaaaccccCa                                   >  1:17970720‑M1/34‑35 (MQ=255)
 gATTACCATCGACACCGCCGACAATAAAATCCTCa                                   >  1:13861885/1‑35 (MQ=255)
  aTTACCATCGACACCGCCGACAATAAAATCCTCAg                                  >  1:16800743/1‑35 (MQ=255)
  aTTACCATCGACACCGCCGACAATAAAATCCTCAg                                  >  1:16108901/1‑35 (MQ=255)
   ttACCATCGACACCGCCGACCATAAAATCCTCacc                                 >  1:2316063/1‑33 (MQ=25)
   ttACCATCGACACCGCCGACAATAAAATCCTCatc                                 >  1:14986880/1‑33 (MQ=255)
   ttACCATCGACACCGCCGACAATAAAATCCTCAGc                                 >  1:12550598/1‑35 (MQ=255)
   ttACCATCGACACCGCCGACAATAAAATCCTCAGc                                 >  1:3673217/1‑35 (MQ=255)
   ttACCATCGACACCGCCGACAATAAAATCCTCAGc                                 >  1:1827679/1‑35 (MQ=255)
     aCCATCGACACCGCCGACAATAAAATCCTCAGCCg                               >  1:2682485/1‑35 (MQ=255)
      ccATCGACACCGCCGACAATAAAATCCTCAGCCGt                              >  1:8633902/1‑35 (MQ=255)
        aTCGACACCGCCGACAATAAAATCCTCAGCCGTaa                            >  1:16419474/1‑35 (MQ=255)
        aTCGACACCGCCGACAATAAAATCCTCAGCCGTaa                            >  1:6124775/1‑35 (MQ=255)
          cGACACCGCCGACAATATAATCCTCAGCCGTaaaa                          >  1:15004094/1‑35 (MQ=255)
          cGACACCGCCGACAATAAAATCCTCAGCCGCaaaa                          >  1:8203509/1‑35 (MQ=255)
           gACACCGCCGACAATAAAATCCTCAGCCGTaaaaa                         >  1:3340682/1‑35 (MQ=255)
           gACACCGCCGACAATAAAATCCTCAGCCGTaaaaa                         >  1:12452848/1‑35 (MQ=255)
           gACACCGCCGACAATAAAATCCTCAGCCGTaaaaa                         >  1:7243795/1‑35 (MQ=255)
           gACACCGCCGACAATAAAATCCTCAGCCGTaaaaa                         >  1:18728036/1‑35 (MQ=255)
            acacCGCCGACAATAAAATCCTCAGCCGTAAAAAg                        >  1:8819058/1‑35 (MQ=255)
            acacCGCCGACAATAAAATCCTCAGCCGTAAAAAg                        >  1:9854220/1‑35 (MQ=255)
            acacCGCCGACAATAAAATCCTCAGCCGTAAAAAg                        >  1:285468/1‑35 (MQ=255)
              acCGCCGACAATAAAATCCTCAGCCGTAAAAAgct                      >  1:18333823/1‑35 (MQ=255)
              acCGCCGACAATAAAATCCTCAGCCGTAAAAAgct                      >  1:17510203/1‑35 (MQ=255)
              acCGCCGACAATAAAATCCTCAGCCGTAAAAAgct                      >  1:7226360/1‑35 (MQ=255)
              acCGCCGACAATAAAATCCTCAGCCGTAAAAAgct                      >  1:12823960/1‑35 (MQ=255)
              acCGCCGACAATAAAATCCTCAGCCGTAAAAAgct                      >  1:7742180/1‑35 (MQ=255)
               ccgccgACAATAAAATCCTCAGCCGTAAAAAgctg                     >  1:11808903/1‑35 (MQ=255)
               ccgccgACAATAAAATCCTCAGCCGTAAAAAgctg                     >  1:4233492/1‑35 (MQ=255)
               ccgccgACAATAAAATCCTCAGCCGTAAAAAgctg                     >  1:13310185/1‑35 (MQ=255)
               cagccgACAATAAAATCCTGAGCCGTAAAAAgctg                     <  1:8846806/33‑1 (MQ=38)
                 gccgACAATAAAATCCTCAGCCGTAAAAAgctgct                   >  1:12012277/1‑35 (MQ=255)
                 gccgACAATAAAATCCTCAGCCGTAAAAAgctgct                   >  1:10824361/1‑35 (MQ=255)
                 gccgACAATAAAATCCTCAGCCGTAAAAAgctgct                   >  1:10780292/1‑35 (MQ=255)
                  ccgACAATAAAATCCTCAGCCGTAAAAAGctgctg                  >  1:11161533/1‑35 (MQ=255)
                  ccgACAATAAAATCCTCAGCCGTAAAAAGctgctg                  >  1:1106344/1‑35 (MQ=255)
                  ccgACAATAAAATCCTCAGCCGTAAAAAGctgctg                  >  1:9844955/1‑35 (MQ=255)
                  ccgACAATAAAATCCTCAGCCGTAAAAAGctgctg                  >  1:186277/1‑35 (MQ=255)
                  ccgACAATAAAATCCTCAGCCGTAAAAAGctgctg                  >  1:15400965/1‑35 (MQ=255)
                  ccgAAAAAAAATTCCCCAGCCGTAAAAAGctgctg                  <  1:10615165/35‑1 (MQ=19)
                  ccaaaaaaaaaaccccCAGCCGTAAAAAGctgctg                  >  1:1544121‑M1/17‑35 (MQ=255)
                   cgACAATAAAATCCTCAGCCGTAAAAAGCTGCTgg                 >  1:7052900/1‑35 (MQ=255)
                   cgACAATAAAATCCTCAGCCGTAAAAAGCTGCTgg                 >  1:9326910/1‑35 (MQ=255)
                   cgACAATAAAATCCTCAGCCGTAAAAAGCTGCTgg                 >  1:13677187/1‑35 (MQ=255)
                   caaaaaaaaaaccccCAGCCGTAAAAAGCTGCTgg                 >  1:3740673‑M1/16‑35 (MQ=255)
                    gACAATAAAATCCTCAGCCGTAAAAAGCTGCTGGa                >  1:5324395/1‑35 (MQ=255)
                    gACAATAAAATCCTCAGCCGTAAAAAGCTGCTGGa                >  1:2810983/1‑35 (MQ=255)
                    gACAATAAAATCCTCAGCCGTAAAAAGCTGCTGGa                >  1:8835945/1‑35 (MQ=255)
                    gACAATAAAATCCTCAGCCGTAAAAAGCTGCTGGa                >  1:15393210/1‑35 (MQ=255)
                     aaaaaaaaaccccCAGCCGTAAAAAGCTGCTGGAt               >  1:592166‑M1/14‑35 (MQ=255)
                     aCAATAAAATCCTCAGCCGTAAAAAGCTGCTGGAt               >  1:327988/1‑35 (MQ=255)
                     aCAATAAAATCCTCAGCCGTAAAAAGCTGCTGGAt               >  1:10837800/1‑35 (MQ=255)
                     aCAATAAAATCCTCAGCCGTAAAAAGCTGCTGGAt               >  1:1597326/1‑35 (MQ=255)
                     aCAATAAAATCCTCAGCCGTAAAAAGCTGCTGGAt               >  1:19123516/1‑35 (MQ=255)
                     aCAAAAAAACCCCCAGCCGTAAAAAGCTGCTGGAt               <  1:17999341/35‑1 (MQ=25)
                      cAAAAAAATCCCCAGCCGTAAAAAGCTGCTGGATg              <  1:6802883/35‑1 (MQ=25)
                      aaaaaaaaccccCAGCCGTAAAAAGCTGCTGGATg              >  1:373708‑M1/13‑35 (MQ=255)
                      aaaTAAAATCCCCAGCCGTAAAAAGCTGCTGGATg              <  1:3384760/34‑1 (MQ=255)
                       aaTAAAATCCTCAGCCGTAAAAAGCTGCTGGATgg             >  1:10417095/1‑34 (MQ=255)
                       aaTAAAATCCTCAGCCGTAAAAAGCTGCTGGATGa             >  1:7679917/1‑35 (MQ=255)
                        ataaaaccccCAGCCGTAAAAAGCTGCTGGATGAc            >  1:4589836‑M1/11‑35 (MQ=255)
                        aTAAAATCCTCAGCCGTAAAAAGCTGCTGGATggc            >  1:734547/1‑33 (MQ=255)
                        aTAAAATCCTCAGCCGTAAAAAGCTGCTGGATGAc            >  1:14636078/1‑35 (MQ=255)
                         taaaaccccCAGCCGTAAAAAGCTGCTGGATGACg           >  1:755307‑M1/10‑35 (MQ=255)
                         tAAAATCCTCAGCCGTAAAAAGCTGCTGGATGACg           >  1:18721910/1‑35 (MQ=255)
                         tAAAACCCTCAGCCGTAAAAAGCTGCTGGATGACg           <  1:15483699/35‑1 (MQ=255)
                          aaaaccccCAGCCGTAAAAAGCTGCTGGATGACgg          >  1:405141‑M1/9‑35 (MQ=255)
                          aaaaccccCAGCCGTAAAAAGCTGCTGGATGACgg          >  1:16047544‑M1/9‑35 (MQ=255)
                          aaaaTCCTCAGCCGTAAAAAGCTGCTGGATGACgt          >  1:1920763/1‑34 (MQ=255)
                           aaaTCCTCAGCCGTAAAAAGCTGCTGGATGACGGc         >  1:20167229/1‑35 (MQ=255)
                           aaaTCCTCAGCCGTAAAAAGCTGCTGGATGACGGc         >  1:6237763/1‑35 (MQ=255)
                            actcccCAGCCGTAAAAAGCTGCTGGATGACGGCa        >  1:11345337‑M1/7‑35 (MQ=255)
                             accccCAGCCGTAAAAAGCTGCTGGATGACGGCaa       >  1:1204213‑M1/6‑35 (MQ=255)
                             aTCCTCAGCCGTAAAAAGCTGCTGGATGACTGCaa       >  1:3023544/1‑35 (MQ=255)
                             aTCCTCAGCCGTAAAAAGCTGCTGGATGACGGCaa       >  1:2724560/1‑35 (MQ=255)
                             aTCCTCAGCCGTAAAAAGCTGCTGGATGACGGCaa       >  1:18288366/1‑35 (MQ=255)
                             aTCCTCAGCCGTAAAAAGCTGCTGGATGACGGCaa       >  1:19817764/1‑35 (MQ=255)
                              tCCTCAGCCGTAAAAAGCTGCTGGATGACGGCaaa      >  1:4552815/1‑35 (MQ=255)
                               cccCAGCCGTAAAAAGCTGCTGGATGACGGCAAag     >  1:626954‑M1/4‑35 (MQ=255)
                               ccTCAGCCGTAAAAATCTGCTGGATGACGGCAAag     >  1:13334540/1‑35 (MQ=255)
                               ccTCAGCCGTAAAAAGCTGCTGGATGACGGCAAag     >  1:6372784/1‑35 (MQ=255)
                                ccCAGCCGTAAAAAGCTGCTGGATGACGGCAAaga    >  1:14310074‑M1/3‑35 (MQ=255)
                                ccCAGCCGTAAAAAGCTGCTGGATGACGGCAAaga    >  1:19531394‑M1/3‑35 (MQ=255)
                                ccCAGCCGTAAAAAGCTGCTGGATGACGGCAAaga    >  1:7355330‑M1/3‑35 (MQ=255)
                                cTCAGCCGTAAAAAGCTGCTGGATGACGGCAAaga    >  1:13106656/1‑35 (MQ=255)
                                cTCAGCCGTAAAAAGCTGCTGGATGACGGCAAaga    <  1:18083369/35‑1 (MQ=255)
                                cTCAGCCGTAAAAAGCTGCTGGATGACGGCAAaga    >  1:17750841/1‑35 (MQ=255)
                                 tCAGCCGTAAAAAGCTGCTGGATGACGGCAAagag   >  1:15989131/1‑35 (MQ=255)
                                 cCAGCCGTAAAAAGCTGCTGGATGACGGCAAagag   >  1:11037933‑M1/2‑35 (MQ=255)
                                 cCAGCCGTAAAAAGATGCTGGATGACGGCAAagag   >  1:4874778‑M1/2‑35 (MQ=255)
                                  CAGCCGTAAAAAGCTGCTGGATGACGGCAaagagn  >  1:9369610‑M1/1‑34 (MQ=255)
                                  CAGCCGTAAAAAGCTGCTGGATGACGGCAAAGAGc  <  1:4177067‑M1/35‑1 (MQ=255)
                                  CAGCCGTAAAAAGCTGCTGGATGACGGCAAAGAGc  <  1:1466311‑M1/35‑1 (MQ=255)
                                  CAGCCGTAAAAAGCTGCTGGATGACGGCAAAGAGc  <  1:16989190‑M1/35‑1 (MQ=255)
                                  CAGCCGTAAAAAGCTGCTGGATGACGGCAAAGAGc  <  1:20417044‑M1/35‑1 (MQ=255)
                                  |                                  
TGATTACCATCGACACCGCCGACAATAAAATCCTCAGCCGTAAAAAGCTGCTGGATGACGGCAAAGAGC  >  REL606/1494039‑1494107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.