New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 177442943 (0.420)8 (0.090) 4/40 NT 14.3% coding (783/2388 nt) pheT phenylalanyl‑tRNA synthetase beta subunit
?REL606 = 2595910 60 (0.700)coding (551/1062 nt) yphC predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding

Only 100 of 129 total aligned reads displayed.

CAATGCGATCTTTATCGAAAGCGTGCATCGGCTGGCCCAGTTCGAGCAGCACATAGTTGGTGACGTCAA  >  REL606/1774395‑1774463
                                  |                                  
cAATGCGATCTTTATCGAAAGCGTGCATCGGCTGG                                    <  1:8450383‑M1/35‑1 (MQ=255)
cAATGCGATCTTTATCGAAAGCGTGCATCGGCTGG                                    >  1:7445544‑M1/1‑35 (MQ=255)
cAATGCGATCTTTATCGAAAGCGTGCATCGGCTGG                                    <  1:19991068‑M1/35‑1 (MQ=255)
cAATGCGATCTTTATCGAAAGCGTGCATCGGCTGG                                    <  1:12979658‑M1/35‑1 (MQ=255)
 aaTGCGATCTTTATCGAAAGCGTGCATCGGCTGGg                                   >  1:7919196‑M1/1‑34 (MQ=255)
 aaTGCGATCTTTATCGAAAGCGTGCATCGGCTGGg                                   >  1:20276736‑M1/1‑34 (MQ=255)
 aaTGCGATCTTTATCGAAAGCGTGCATCGGCTGGg                                   >  1:15122842‑M1/1‑34 (MQ=255)
 aaTGCGATCTTTATCGAAAGCGTGCATCGGCTGGg                                   >  1:1157368‑M1/1‑34 (MQ=255)
 aaTGCGATCTTTATCGAAAGCGTGCATCGGCTGGg                                   >  1:14161753‑M1/1‑34 (MQ=255)
  aTGCGATCTTTATCGAAAGCGTGCATCGGCTGGgg                                  >  1:19607030‑M1/1‑33 (MQ=255)
  aTGCGATCTTTATCGAAAGCGTGCATCGGCTGGgc                                  >  1:14953498‑M1/1‑33 (MQ=255)
   tGCGATCTTTATCGAAAGCGTGCATCGGCTGGgcc                                 >  1:10067001‑M1/1‑32 (MQ=255)
   tGCGATCTTTATCGAAAGCGTGCATCGGCTGGccc                                 <  1:17097878/35‑1 (MQ=255)
   tGCGATCTTTATCGAAAGCGTGCATCGGCTGGccc                                 <  1:20231159/35‑1 (MQ=255)
    gCGATCTTTATCGAAAGCGTGCATCGGCTGGggcg                                >  1:19033125‑M1/1‑31 (MQ=255)
    gCGATCTTTATCGAAAGCGTGCATCGGCTGGggcg                                >  1:12213351‑M1/1‑31 (MQ=255)
    gCGATCTTTATCGAAAGCGTGCATCGGCTGGggcc                                >  1:15012455‑M1/1‑31 (MQ=255)
    gCGATCTTTATCGAAAGCGTGCATCGGCTGGCCCa                                <  1:11000958/35‑1 (MQ=255)
    gCGATCTTTATCGAAAGCGTGCATCGGCTGGCCCa                                <  1:5038983/35‑1 (MQ=255)
    gCGATCTTTATCGAAAGCGTGCATCGGCTGGCCCa                                <  1:14174745/35‑1 (MQ=255)
    gCGATCTTTATCGAAAGCGTGCATCGGCTGGCCCa                                <  1:13400214/35‑1 (MQ=255)
     cGATCTTTATCGAAAGCGTGCATCGGCTGGCCCAg                               <  1:19553174/35‑1 (MQ=255)
     cGATCTTTATCGAAAGCGTGCATCGGCTGGCCCAg                               <  1:8279578/35‑1 (MQ=255)
     cGATCTTTATCGAAAGCGTGCATCGGCTGGCCCAg                               <  1:989191/35‑1 (MQ=255)
      gATCTTTATCGAAAGCGTGCATCGGCTGGggcggg                              >  1:1208349‑M1/1‑29 (MQ=255)
       aTCTTTATCGAAAGCGTGCATCGGCTGGggcgggg                             >  1:6852737‑M1/1‑28 (MQ=255)
       aTCTTTATCGAAAGCGTGCATCGGCTGGCCCAGtt                             <  1:5584489/35‑1 (MQ=255)
        tCTTTATCGAAAGCGTGCATCGGCTGGCCCAGTTc                            <  1:10314552/35‑1 (MQ=255)
        tCTTTATCGAAAGCGTGCATCGGCTGGCCCAGTTc                            <  1:20066932/35‑1 (MQ=255)
        tCTTTATCGAAAGCGTGCATCGGCTGGCCCAGTTc                            <  1:1915737/35‑1 (MQ=255)
         cTTTATCGAAAGCGTGCATCGGCTGGgggcggtcg                           >  1:15869106‑M1/1‑26 (MQ=255)
         cTTTATCGAAAGCGTGCATCGGCTGGGCCGGGTCg                           >  1:20061850/1‑35 (MQ=25)
         cTTTATCGAAAGCGTGCATCGGCTGGCCCAGTTCg                           <  1:5923163/35‑1 (MQ=255)
         cTTTATCGAAAGCGTGCATCGGCTGGCCCAGTTCg                           <  1:4557919/35‑1 (MQ=255)
          tttATCGAAAGCGTGCATCGGCTGGggccggtcgg                          >  1:9919687‑M1/1‑25 (MQ=255)
          tttATCGAAAGCGTGCATCGGCTGGggccggtcgg                          >  1:4390020‑M1/1‑25 (MQ=255)
          tttATCGAAAGCGTGCATCGGCTGGCCCAGTTCGa                          <  1:11367121/35‑1 (MQ=255)
          tttATCGAAAGCGTGCATCGGCTGGCCCAGTTCGa                          <  1:19908026/35‑1 (MQ=255)
           ttATCGAAAGCGTGCATCGGCTGGggccggtcggg                         >  1:11291789‑M1/1‑24 (MQ=255)
           ttATCGAAAGCGTGCATCGGCTGGCCCAGTTCGag                         <  1:6506507/35‑1 (MQ=255)
            tATCGAAAGCGTGCATCTGCTGGCCCAGTTCGggc                        >  1:3075034/1‑35 (MQ=37)
             aTCGAAAGCGTGCATCGGCTGGCCCAGTTCGagca                       <  1:5083317/35‑1 (MQ=255)
             aTCGAAAGCGTGCATCGGCTGGCCCAGTTCGagca                       <  1:4344313/35‑1 (MQ=255)
             aTCGAAAGCGTGCATAGGCTGGCCCAGTTCGagca                       <  1:20590732/35‑1 (MQ=255)
               cGAAAGCGTGCATCGGCTGGCCCAGTTCGagcagc                     <  1:8076138/35‑1 (MQ=255)
                gAAAGCGTGCATCGGCTGGCCCAGTTCGAgcagca                    <  1:327471/35‑1 (MQ=255)
                gAAAGCGTGCATCGGCTGGCCCAGTTCGAgcagca                    <  1:18022637/35‑1 (MQ=255)
                 aaaGCGTGCATCGGCTGGCCCAGTTCGAGCAGcac                   <  1:18772763/35‑1 (MQ=255)
                  aaGCGTGCATCGGCTGGCCCAGTTCGAGCAGcaca                  <  1:5592558/35‑1 (MQ=255)
                  aaGCGTGCATCGGCTGGCCCAGTTCGAGCAGcaca                  <  1:15228349/35‑1 (MQ=255)
                  aaGCGTGCATCGGCTGGCCCAGTTCGAGCAGcaca                  <  1:19086987/35‑1 (MQ=255)
                   aGCGTGCATCGGCTGGCCCAGTTCGAGCAGCACAt                 <  1:19669155/35‑1 (MQ=255)
                    gCGTGCATCGGCTGGCCCAGTTCGAGCAGCACATa                <  1:743645/35‑1 (MQ=255)
                       tGCATCGGCTGGCCCAGTTCGAGCAGCACATAGtt             <  1:9660823/35‑1 (MQ=255)
                       tGCATCGGCTGGCCCAGTTCGAGCAGCACATAGtt             <  1:16970516/35‑1 (MQ=255)
                           tCGGCTGGCCCAGTTCGAGCAGCACATAGTTGGTg         <  1:14627632/35‑1 (MQ=255)
                           tCGGCTGGCCCAGTTCGAGCAGCACATAGTTGGTg         <  1:3067013/35‑1 (MQ=255)
                            cGGCTGGCCCAGTTCGAGCAGCACATAGTTGGTGa        <  1:5866239/35‑1 (MQ=255)
                             ggCTGGCCCAGTTCGAGCAGCACATAGTTGGTGAc       >  1:11929538/1‑35 (MQ=255)
                             ggCTGGCCCAGTTCGAGCAGCACATAGTTGGTGAc       <  1:8118928/35‑1 (MQ=255)
                             ggCTGGCCCAGTTCGAGCAGCACATAGTTGGTGAc       <  1:6410085/35‑1 (MQ=255)
                             ggCTGGCCCAGTTCGAGCAGCACATAGTTGGTGAc       <  1:5591369/35‑1 (MQ=255)
                             ggCTGGCCCAGTTCGAGCAGCACATAGTTGGTGAc       >  1:3370959/1‑35 (MQ=255)
                             ggCTGGCCCAGTTCGAGCAGCACATAGTTGGGGAc       >  1:20275427/1‑35 (MQ=255)
                              gCTGGCCCAGTTCGAGCAGCACATAGTTGGTGACg      <  1:16263509/35‑1 (MQ=255)
                              gCTGGCCCAGTTCGAGCAGCACATAGTTGGTGACg      >  1:73460/1‑35 (MQ=255)
                              gCTGGCCCAGTTCGAGCAGCACATAGTTGGTGACg      >  1:5939726/1‑35 (MQ=255)
                              gCTGGCCCAGTTCGAGCAGCACATAGTTGGTGACg      <  1:16283882/35‑1 (MQ=255)
                              gCTGGCCCAGTTCGAGCAGCACATAGTTGGTGACg      >  1:8094310/1‑35 (MQ=255)
                              gCTGGCCCAGTTCGAGCAGCACATAGTTGGTGACg      >  1:8579297/1‑35 (MQ=255)
                              gCTGGCCCAGTTCGAGCAGCACATAGTTGGTGACg      >  1:3348561/1‑35 (MQ=255)
                               cTGGggccggtcggcgtgatggcgatgatgctggc     <  1:11373628‑M1/35‑32 (MQ=255)
                               cTGGggccggtcggcgtgatggcgatgatgctggc     <  1:15268549‑M1/35‑32 (MQ=255)
                               cTGGggccggtcggcatgatggcgatgatgctggc     <  1:12690644‑M1/35‑32 (MQ=255)
                               cTGGggccggtcggcatgatggcgatgatgctggc     >  1:783797‑M1/1‑4 (MQ=255)
                               cTGGCCCAGTTCGAGCAGCACATAGTTGGTGACGt     >  1:17098782/1‑35 (MQ=255)
                               cTGGCCCAGTTCGAGCAGCACATAGTTGGTGACGt     >  1:11604515/1‑35 (MQ=255)
                               cTGGCCCAGTTCGAGCAGCACATAGTTGGTGACGt     >  1:7506061/1‑35 (MQ=255)
                               cTGGCCCAGTTCGAGCAGCACATAGTTGGTGACGt     >  1:9645324/1‑35 (MQ=255)
                                tGGggccggtcggcatgatggcgatgatgctggcg    <  1:11533596‑M1/35‑33 (MQ=255)
                                tGGggccggtcggcatgatggcgatgatgctggcg    <  1:17601995‑M1/35‑33 (MQ=255)
                                tGGCCCAGTTCGAGCAGCACATAGTTGGTGACGTc    <  1:9786818/35‑1 (MQ=255)
                                tGGCCCAGTTCGAGCAGCACATAGTTGGTGACGTc    <  1:17920527/35‑1 (MQ=255)
                                tGGCCCAGTTCGAGCAGCACATAGTTGGTGACGTc    >  1:14586234/1‑35 (MQ=255)
                                tGGCCCAGTTCGAGCAGCACATAGTTGGTGACGTc    <  1:2280908/35‑1 (MQ=255)
                                tGGCCCAGTTCGAGCAGCACATAGTTGGTGACGTc    >  1:17850456/1‑35 (MQ=255)
                                 ggCCCAGTTCGAGCAGCACATAGTTGGTGACGTca   <  1:1492640/35‑1 (MQ=255)
                                 ggCCCAGTTCGAGCAGCACATAGTTGGTGACGTca   <  1:10441298/35‑1 (MQ=255)
                                 ggCCCAGTTCGAGCAGCACATAGTTGGTGACGTca   >  1:18595912/1‑35 (MQ=255)
                                 ggCCCAGTTCGAGCAGCACATAGTTGGTGACGTca   >  1:18481238/1‑35 (MQ=255)
                                  gggccggtcggcatgatggcgatgatgctggcgaa  <  1:12168262‑M1/35‑35 (MQ=255)
                                  gggccggtcggcatgatggcgatgatgctggcgaa  <  1:5283613‑M1/35‑35 (MQ=255)
                                  gggccggtcggcatgatggcgatgatgctggcgaa  >  1:5315485‑M1/1‑1 (MQ=255)
                                  gggcaggtcggcatgatggcgatgatgctggcgaa  <  1:6381408‑M1/35‑35 (MQ=255)
                                  gCCCAGTTCGAGCAGCACATAGTTGGTGACGTcaa  >  1:15228100/1‑35 (MQ=255)
                                  gCCCAGTTCGAGCAGCACATAGTTGGTGACGTcaa  <  1:14485946/35‑1 (MQ=255)
                                  gCCCAGTTCGAGCAGCACATAGTTGGTGACGTcaa  <  1:13669845/35‑1 (MQ=255)
                                  gCCCAGTTCGAGCAGCACATAGTTGGTGACGTcaa  >  1:19419703/1‑35 (MQ=255)
                                  gCCCAGTTCGAGCAGCACATAGTTGGTGACGTcaa  >  1:14764890/1‑35 (MQ=255)
                                  gCCCAGTTCGAGCAGCACATAGTTGGTGACGTcaa  <  1:14030800/35‑1 (MQ=255)
                                  |                                  
CAATGCGATCTTTATCGAAAGCGTGCATCGGCTGGCCCAGTTCGAGCAGCACATAGTTGGTGACGTCAA  >  REL606/1774395‑1774463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.