New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 734239 =59 (0.570)18 (0.180) 6/48 NT 29.0% coding (1021/1284 nt) gltA citrate synthase
?REL606 1556579 = 29 (0.280)intergenic (‑104/+298) ydeN/ydeO hypothetical protein/predicted DNA‑binding transcriptional acfivator

CTGGGCACGAAGGATGACCTGCTGGAAGTGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/734272‑734239
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAAGGGAAATAA  >  REL606/1556579‑1556594
                                                  
CTGGGCACGAAGGATGACCTGCTGGAAGTGGCTAA                 >  1:9766914/1‑35
CTGGGCACGAAGGATGACCTGCTGGAAGTGGCTAA                 >  1:4851503/1‑35
CTGGGCACAAAGGATGACCTGCTGGAAGTGGCTAA                 >  1:19130757/1‑35
 TGGGCACGAAGGATGACCTGCTGGAAGTGGCTAAA                >  1:5725825/1‑35
 TGGGCACGAAGGATGACCTGCTGGAAGTGGCTAAA                >  1:12812535/1‑35
 TGGGCACGAAGGATGACCTGCTGGAAGTGGCTAAA                >  1:3419595/1‑35
 TGGGCACGAAGGATGACCTGCTGGAAGTGGCTAAA                >  1:16176944/1‑35
  GGGCACGAAGGATGACCTGCTGGAAGTGGCTAAAA               >  1:14204160/1‑35
   GGCACGAAGGATGACCTGCTGGAAGTGGCTAAAAA              >  1:7722065/1‑35
    GCACGAAGGATGACCTGCTGGAAGTGGCTAAAAAA             >  1:256071/1‑35
     CACGAAGGATGACCTGCTGGAAGTGGCTAAAAAga            >  1:11515633/1‑33
     CACGAAGGATGACCTGCTGGAAGTGGCTAAAAAAA            >  1:9510464/1‑35
     CACGAAGGATGACCTGCTGGAAGTGGCTAAAAAAA            >  1:5806688/1‑35
     CACGAAGGATGACCTGCTGGAAGTGGCTAAAAAAA            >  1:13001542/1‑35
     CACGAAGGATGACCTGCTGGAAGTGGCTAAAAAAA            >  1:16940476/1‑35
      ACGAAGGATGACCTGCTGGAAGTGGCTAAAAAGAA           >  1:15601973/1‑35
      ACGAAGGATGACCTGCTGGAAGTGGCTAAAAAAAA           >  1:6120905/1‑35
       CGAAGGATGACCTGCTGGAAGTGGCTAAAAAAAAa          >  1:9095395/1‑34
       CGAAGGATGACCTGCTGGAAGTGGCTAAAAAAAAG          >  1:17533132/1‑35
         AAGGATGACCTGCTGGAAGTGGCTAAAAAAGAGGa        >  1:912370/1‑34
         AAGGATGACCTGCTGGAAGTGGCTAAAAAAGAGGG        >  1:13719390/1‑35
         AAGGATGACCTGCTGGAAGTGGCTAAAAAAAGGGG        >  1:18182106/1‑35
            GATGACCTGCTGGAAGTGGCTAAAAAAAGGGGAAA     >  1:12733759/1‑35
            GATGACCTGCTGGAAGTGGCTAAAAAAAAGGGAAA     >  1:740683/1‑35
            GATGACCTGCTGGAAGTGGCTAAAAAAAAAGGAAA     >  1:10771/1‑35
             ATGACCTGCTGGAAGTGGCTAAAAAAAAGGGAAAa    >  1:2789605/1‑34
             ATGACCTGCTGGAAGTGGCTAAAAAAAAGGGAAAa    >  1:7359520/1‑34
              TGACCTGCTGGAAGTGGCTAAAAAAAAGGGAAAaa   >  1:8491449/1‑33
               GACCTGCTGGAAGTGGCTAAAAAAAAGGGAAAAAA  >  1:1525721/1‑35
                                                  
CTGGGCACGAAGGATGACCTGCTGGAAGTGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/734272‑734239
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAAGGGAAATAA  >  REL606/1556579‑1556594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.