New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2017663 =30 (0.290)18 (0.200) 5/42 NT 23.5% intergenic (‑158/+109) yeeF/yeeY predicted amino‑acid transporter/predicted DNA‑binding transcriptional regulator
?REL606 3912266 = 91 (1.010)intergenic (+46/‑94) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

AAAAATGACTAAAAACCGACGTTTCATCAGCGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2017698‑2017663
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGTTTTTTTTGA  >  REL606/3912266‑3912278
                                                 
AAAAATTACTAAAAACCGACGTTTCATCAGCGTCG                >  1:3036473/1‑35
AAAAATGACTAAAAACCGACGTTTCATCAGCGTCG                >  1:18318872/1‑35
AAAAATGACTAAAAACCGACGTTTCATCAGCGTCG                >  1:11165611/1‑35
   AATGACTAAAAACCGACGTTTCATCAGCGTCGGGG             >  1:17216064/1‑35
     TGACTAAAAACCGACGTTTCATCAGCGTCGGGGGT           >  1:1279604/1‑35
       ACTAAAAACCGACGTTTCATCAGCGTCGGGGGTTT         >  1:19030614/1‑35
       ACTAAAAACCGACGTTTCATCAGCGTCGGGGGGTT         >  1:9056801/1‑35
       ACTAAAAACCGACGTTTCATCAGCGTCGGGGGGTT         >  1:20276429/1‑35
        CTAAAAACCGACGTTTCATCAGCGTCGGGGGTTTT        >  1:10625995/1‑35
        CTAAAAACCGACGTTTCATCAGCGTCGGGGGGTTT        >  1:10934208/1‑35
         TAAAAACCTACGTTTCATCAGCGTCGGGGGTTTTT       >  1:5424980/1‑35
         TAAAAACCGACGTTTCATCAGCGTCTGGGGTTTTT       >  1:902871/1‑35
         TAAAAACCGACGTTTCATCAGCGTCGGGGGGTTTT       >  1:5798182/1‑35
           AAAACCGACGTTTCATCAGCGTCGGGGGTTTTTTT     >  1:15893402/1‑35
           AAAACCGACGTTTCATCAGCGTCGGGGGTTTTTTT     >  1:12780314/1‑35
           AAAACCGACGTTTCATCAGCGTCGGGGGTTTTTTT     >  1:8058193/1‑35
           AAAACCGACGTTTCATCAGCGTCGGGGGGTTTTTT     >  1:1111737/1‑35
           AAAACCGACGTTTCATCAGCGTCGGGGGGTTTTTT     >  1:10421962/1‑35
            AAACCGACGTTTCATCAGCGTCGGGGGTTTTTTTT    >  1:5702640/1‑35
             AACCGACGTTTCATCAGCGTCGGGGGTTTTTTTTt   >  1:10243371/1‑34
             AACCGACGTTTCATCAGCGTCGGGGGGTTTTTTTt   >  1:5180529/1‑34
              ACCGACGTTTCATCAGCGTCGGGGGTTTTTTTTtt  >  1:16882405/1‑33
              ACCGACGTTTCATCAGCGTCGGGGGTTTTTTTTtt  >  1:6223666/1‑33
                                                 
AAAAATGACTAAAAACCGACGTTTCATCAGCGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2017698‑2017663
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGTTTTTTTTGA  >  REL606/3912266‑3912278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.