New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1213353 | 36 (0.350) | 4 (0.060) | 3/30 | NT | 9.5% | intergenic (‑85/+136) | ycgX/ycgE | hypothetical protein/predicted DNA‑binding transcriptional regulator |
? | REL606 | = 4512602 | 54 (0.840) | coding (720/747 nt) | yjhP | predicted methyltransferase |
Only 100 of 164 total aligned reads displayed.
CCTGTTGTTACCGGGCGATGAGTGCGAACACGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCACGTAGC > REL606/4512568‑4512636 | cTGTTGTTACCGGGCGATGAGTGCGAACACGCCCc > 1:17972211‑M2/1‑34 (MQ=255) cTGTTGTTACCGGGCGATGAGTGCGAACACGCCCc > 1:15583823‑M2/1‑34 (MQ=255) cTGTTGTTACCGGGCGATGAGTGCGAACACGCCCc > 1:7700004‑M2/1‑34 (MQ=255) cTGTTGTTACCGGGCGATGAGTGCGAACACGCCCc < 1:11242715‑M2/35‑2 (MQ=255) cTGTTGTTACCGGGCGATGAGTGCGAACACGCCCc < 1:3451034‑M2/35‑2 (MQ=255) gttgttACCGGGCGATGAGTGCGAACACGCCCcag > 1:5714748‑M2/1‑32 (MQ=255) gttgttACCGGGCGATGAGTGCGAACACGCCCcag > 1:959803‑M2/1‑32 (MQ=255) ttgttGCCGGGCGATGAGTGCGAACACGCCCcagc > 1:5145869‑M2/1‑31 (MQ=255) ttgttACCGGGCGATGAGTGCGAACACGCCCcagc < 1:8188745‑M2/35‑5 (MQ=255) ttgttACCGGGCGATGAGTGCGAACACGCCCcaag < 1:17569471‑M2/35‑5 (MQ=255) tgttACCGGGCGATGAGTGCGAACACGCCCcagcc < 1:5985667‑M2/35‑6 (MQ=255) tgttACCGGGCGATGAGTGCGAACACGCCCcagcc > 1:15340886‑M2/1‑30 (MQ=255) gttACCGGGCAATGAGTGCGAACACGCCCcagcca < 1:5099512‑M2/35‑7 (MQ=255) gtcACCGGGCGATGAGTGCGAACACGCCCcagcca < 1:11084962‑M2/35‑7 (MQ=255) ttACCGGGCGATGAGTGCGAACACGCCCcagccaa < 1:17492339‑M2/35‑8 (MQ=255) ttACCGGGCGATGAGTGCGAACACGCCCcagccaa < 1:17531671‑M2/35‑8 (MQ=255) ttACCGGGCGATGAGTGCGAACACGCCCcagccaa > 1:20471189‑M2/1‑28 (MQ=255) ttACCGGGCGATGAGTGCGAACACGCCCcagccaa < 1:7824901‑M2/35‑8 (MQ=255) ttACCGGGCGATGAGTGCGAACACGCCCcagccaa < 1:3146775‑M2/35‑8 (MQ=255) ttACCGGGCGATGAGTGCGAACACGCACcagccaa > 1:16783554‑M2/1‑28 (MQ=255) tACCGGGCGATGAGTGCGAACACGCCCcagccaaa > 1:13897757‑M2/1‑27 (MQ=255) tACCGGGCGATGAGTGCGAACACGCCCcagccaaa < 1:5199706‑M2/35‑9 (MQ=255) tACCGGGCGATGAGTGCGAACACGCCCcagccaaa < 1:3006353‑M2/35‑9 (MQ=255) aCCGGGCGATGAGTGCGAACACGCCCcagccaaag < 1:1856579‑M2/35‑10 (MQ=255) ccGGGCGATGAGTGCGAACACGCCCCAGCCAAAGc > 1:14266209/1‑35 (MQ=255) ccGGGCGATGAGTGCGAACACGCCCCAGCCAAAGc < 1:5410471/35‑1 (MQ=255) ccGGGCGATGAGTGCGAACACGCCCCAGCCAAAGc < 1:5894811/35‑1 (MQ=255) cGGGCGATTAGTGCGAACACGCCCCAGCAAAAGCa < 1:3239575/35‑1 (MQ=38) cGGGCGATGAGTGCGAACACGCCCCAGCCAAAGCa < 1:5573764/35‑1 (MQ=255) cGGGCGATGAGTGCGAACACGCCCCAGCCAAAGCa > 1:13055639/1‑35 (MQ=255) gggCGATTAGTGCGAACACGCCCCAGCCAAAGCAt > 1:7397588/1‑35 (MQ=255) gggCGATGAGTGCGAACACGCCCCAGCCAAAGCAt > 1:3405440/1‑35 (MQ=255) gggCGATGAGTGCGAACACGCCCCAGCCAAAGCAt > 1:16791235/1‑35 (MQ=255) gggCGATGAGTGCGAACACGCCCCAGCCAAAGCAt < 1:980238/35‑1 (MQ=255) ggCGATGAGTGCGAACACGCCCCAGCCAAAGCAtt > 1:7469458/1‑35 (MQ=255) ggCGATGAGTGCGAACACGCCCCAGCCAAAGCAtt < 1:11694284/35‑1 (MQ=255) ggCGATGAGTGCGAACACGCCCCAGCCAAAGCAtt < 1:16112084/35‑1 (MQ=255) gCGATGAGTGCGAACACGCCCCAGCCAAAGCATTc < 1:14824498/35‑1 (MQ=255) gCGATGAGTGCGAACACGCCCCAGCCAAAGCATTc < 1:15599044/35‑1 (MQ=255) gCGATGAGTGCGAACACGCCCCAGCCAAAGCATTc > 1:16025921/1‑35 (MQ=255) gCGATGAGTGCGAACACGCCCCAGCCAAAGCATTc < 1:18002006/35‑1 (MQ=255) cGATGAGTGCGAACACGCCCCAGCCAAAGCATTcc < 1:4946797/35‑1 (MQ=255) gATGAGTGCGAACACGCCCCAGCCAAAGCATTccc < 1:7952628/35‑1 (MQ=255) aTGAGTGCGAACACGCCCCAGCCAAAGCATTCCcg > 1:17044029/1‑35 (MQ=255) tGAGTGCGAACACGCCCCAGCCAAAGCATTCCcgc > 1:4677506/1‑35 (MQ=255) tGAGTGCGAACACGCCCCAGCCAAAGCATTCCcgc > 1:15873183/1‑35 (MQ=255) tGAGTGCGAACACGCCCCAGCCAAAGCATTCCcgc < 1:14403616/35‑1 (MQ=255) tGAGTGCGAACACGCCCCAGCCAAAGCATTCCcgc > 1:20350456/1‑35 (MQ=255) gTGCGAACACGCCCCAGCCAAAGCATTCCcgcgcg > 1:10924414/1‑35 (MQ=255) gTGCGAACACGCCCCAGCCAAAGCATTCCcgcgcg > 1:12115124/1‑35 (MQ=255) gTGCGAACACGCCCCAGCCAAAGCATTCCcgcgcg < 1:3764052/35‑1 (MQ=255) gTGCGAACACGCCCCAGCCAAAGCATTCCcgcgcg < 1:17602920/35‑1 (MQ=255) ggCGAACACCCCCCAGCCAAAGCATTCCCGCGCGt < 1:9639846/34‑1 (MQ=255) gCGAACACGCCCCAGCCAAAGCATTCCCGCGCGTa < 1:15815827/35‑1 (MQ=255) gCGAACACGCCCCAGCCAAAGCATTCCCGCGCGTa < 1:13636455/35‑1 (MQ=255) gCGAACACGCCCCAGCCAAAGCATTCCCGCGCGTa < 1:18256014/35‑1 (MQ=255) gCGAACACGCCCCAGCCAAAGCATTCCCGCGCGTa < 1:1817775/35‑1 (MQ=255) cGAACACGCCCCAGCCAAAGCATTCCCGCGCGTAg < 1:5842350/35‑1 (MQ=255) cGAACACGCCCCAGCCAAAGCATTCCCGCGCGTAg > 1:2681550/1‑35 (MQ=255) cGAACACGCCCCAGCCAAAGCATTCACGCGCGTAg < 1:2166477/35‑1 (MQ=255) gAACACGCCCCAGCCAAAGCATTCCCGCGCGTAgg > 1:16158079/1‑35 (MQ=255) gAACACGCCCCAGCCAAAGCATTCCCGCGCGTAgg > 1:15270164/1‑35 (MQ=255) aaCACGCCCCAGCCAAAGCATTCCCGCGCGTAGGt < 1:17750990/35‑1 (MQ=255) ccaccCCCcagccaaaggacagaccagattgaagt > 1:10349426‑M2/2‑8 (MQ=255) acacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTc < 1:17838778/35‑1 (MQ=255) acacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTc < 1:7048804/35‑1 (MQ=255) acacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTc > 1:12785658/1‑35 (MQ=255) acacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTc > 1:7439167/1‑35 (MQ=255) cacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCa < 1:14245302/35‑1 (MQ=255) cacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCa > 1:19354864/1‑35 (MQ=255) cacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCa < 1:20446136/35‑1 (MQ=255) cacGCCCCAGCAAAAGCATTCCCGCGCGTAGGTCa < 1:2361259/35‑1 (MQ=255) cccccccagccaaaggacagaccagattgaagtgg > 1:4211252‑M2/4‑6 (MQ=255) cccccccAGCCAAAGCATTCCCGCGCGTAGGTCAc < 1:5524631/32‑1 (MQ=255) acGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCAc < 1:1013692/35‑1 (MQ=255) acGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCAc > 1:9287330/1‑35 (MQ=255) acGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCAc > 1:19050648/1‑35 (MQ=255) acGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCAc > 1:2637649/1‑35 (MQ=255) ccccccagccaaaggacagaccagattgaagtggt > 1:10282912‑M2/3‑5 (MQ=255) ccccccagccaaaggacagaccagattgaagtggt > 1:13666154‑M2/3‑5 (MQ=255) gCCCCAGCCAAAGCATTCCCGCGCGTAGGTCACGt > 1:3397454/1‑35 (MQ=255) gCCCCAGCCAAAGCATTCCCGCGCGTAGGTCACGt > 1:8255596/1‑35 (MQ=255) gCCCCAGCCAAAGCATTCCCGCGCGTAGGTCACGt < 1:67215/35‑1 (MQ=255) cccccagccaaaggacagaccagattgaagtggta > 1:16285893‑M2/2‑4 (MQ=255) ccccagccaaaggacagaccagattgaagtggtaa > 1:12367271‑M2/1‑3 (MQ=255) ccccAGCCAAAGCATTCCCGCGCGTAGGTCACGTa < 1:101006/35‑1 (MQ=255) ccccAGCCAAAGCATTCCCGCGCGTAGGTCACGTa < 1:68873/35‑1 (MQ=255) ccccAGCCAAAGCATTCCCGCGCGTAGGTCACGTa < 1:10819630/35‑1 (MQ=255) ccccAGCCAAAGCATTCCCGCGCGTAGGTCACGTa < 1:17332040/35‑1 (MQ=255) cccagccaaaggacagaccagattgaagtggtaaa > 1:8317961‑M2/1‑2 (MQ=255) cccagccaaaggacagaccagattgaagtggtaaa > 1:2719290‑M2/1‑2 (MQ=255) cccagccaaaggacagaccagattgaagtggtaaa > 1:18101977‑M2/1‑2 (MQ=255) cccAGCCAAAGCATTCCCGCGCGTAGGTCACGTAg < 1:19503747/35‑1 (MQ=255) cccAGCCAAAGCATTCCCGCGCGTAGGTCACGTAg < 1:2183171/35‑1 (MQ=255) ccagccaaaggacagaccagattgaagtggtaaaa > 1:9040781‑M2/1‑1 (MQ=255) ccAGCCAAAGCATTCCCGCGCGTAGGTCNCGTANn > 1:8538124/1‑35 (MQ=255) ccAGCCAAAGCATTCCCGCGCGTAGGTCACGTAGc < 1:2318371/35‑1 (MQ=255) ccAGCCAAAGCATTCCCGCGCGTAGGTCACGTAGc > 1:20581221/1‑35 (MQ=255) ccAGCCAAAGCATTCCCGCGCGTAGGTCACGTAGc < 1:3658484/35‑1 (MQ=255) ccAGCCAAAGCATTCCCGCGCGTAGGTCACGTAGc < 1:5644890/35‑1 (MQ=255) | CCTGTTGTTACCGGGCGATGAGTGCGAACACGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCACGTAGC > REL606/4512568‑4512636 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |