New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 283622259 (0.570)12 (0.120) 7/46 NT 15.4% coding (29/396 nt) ygdD conserved inner membrane protein
?REL606 = 4349299 75 (0.760)intergenic (‑166/‑110) yjeH/groES predicted transporter/co‑chaperonin GroES

GCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2836188‑2836222
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGGAAAAAGAAAAAAAATTCTGATCAGCACAAA  <  REL606/4349299‑4349266
                                                                     
GCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGG                                    >  1:9735235/1‑35
GCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGG                                    >  1:5374517/1‑35
GCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGG                                    >  1:15284786/1‑35
GCCCAGAGCCACAAAAATGAAGCAGCTAATGGCGG                                    >  1:2562129/1‑35
 CCCAGAGCCACAAAAATGAAGCCGCTAATGGCGGG                                   >  1:4006493/1‑35
 CCCAGAGCCACAAAAATGAAGCCGCTAATGGCGGG                                   >  1:3934002/1‑35
 CCCAGAGCCACAAAAATGAAGCCGCTAATGGCGGG                                   >  1:14687055/1‑35
  CCAGAGCCACAAAAATGAAGCCGCTAATGGCGGGG                                  >  1:7193411/1‑35
  CCAGAGCCACAAAAATGAAGCCGCTAATGGCGGGG                                  >  1:58400/1‑35
  CCAGAGCCACAAAAATGAAGCCGCTAATGGCGGGG                                  >  1:2863657/1‑35
   CAGAGCCACAAAAATGAAGCCGCTAATGGCGGGGG                                 >  1:10496118/1‑35
   CAGAGCCACAAAAATGAAGCCGCTAATGGCGGGGG                                 >  1:15319086/1‑35
    AGAGCCACAAAAATGAAGCCGCTAATGGCGGGGGa                                >  1:14571760/1‑34
    AGAGCCACAAAAATGAAGCCGCTAATGGCGGGGGa                                >  1:8868909/1‑34
      AGCCACAAAAATGAAGCCGCTAATGGCGGGGGAAA                              >  1:1693075/1‑35
       GCCACAAAAATGAAGCCGCTAATGGCGGGGGGAga                             >  1:7090406/1‑33
       GCCACAAAAATGAAGCCGCTAATGGCGGGGGAAAA                             >  1:12384829/1‑35
       GCCACAAAAATGAAGCCGCTAATGGCGGGGGAAAA                             >  1:7830177/1‑35
        CCACAAAAATGAAGCCGCTAATGGCGGGGGGAAAc                            >  1:10596405/1‑34
        CCACAAAAATGAAGCCGCTAATGGCGGGGGGAAAA                            >  1:8432535/1‑35
         CACAAAAATGAAGCCGCTAATGGCGGGGGGAAAca                           >  1:5534186/1‑33
         CACAAAAATGAAGCCGCTAATGGCGGGGGAAAAAA                           >  1:13607276/1‑35
         CACAAAAATGAAGCCGCTAATGGCGGGGGAAAAAA                           >  1:18774791/1‑35
           CAAAAATGAAGCCGCTAATGGCGGGGGAAAAAAGc                         >  1:8448551/1‑34
              AAATGAAGCCGCTAATGGCGGGGGGAAAAAGAAAA                      >  1:9172282/1‑35
               AATGAAGCCGCTAATGGCGGGGGGAAAAAGAAAAA                     >  1:8649812/1‑35
                ATGAAGCCGCTAATGGCGGGGGGAAAAAGAATAAA                    >  1:2532559/1‑35
                                  GGGGGAAAAAGAAAAAAAATTCTGATCAGCACAAA  >  1:1828663/1‑35
                                  GGGGGAAAAAGAAAAAAAATTCTGATCAGCACAAA  >  1:7241996/1‑35
                                                                     
GCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2836188‑2836222
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGGAAAAAGAAAAAAAATTCTGATCAGCACAAA  <  REL606/4349299‑4349266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.