Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,460 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3893577–3894996 | 3901456 | 6461–7880 | 51 [46] | [0] 180 | insJ‑5–[yieO] | insJ‑5, insK‑5, rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3652533 | NA (NA) | 95 (0.960) | 38/46 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901457 = | 0 (0.000) | coding (963/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
Only 100 of 171 total aligned reads displayed.
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652500‑3652533 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGACTTGGGTAACCATCGATTTTGCAATAATGGAA > REL606/3901457‑3901490 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:9849515/1‑35 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:9553650/35‑1 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:572453/1‑35 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:4031172/1‑35 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:1992758/35‑1 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:18412951/35‑1 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:16530983/1‑35 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:13679283/35‑1 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:13023974/1‑35 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:12785453/35‑1 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGg > 1:20022141/1‑34 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGc > 1:16015204/1‑34 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGc > 1:13082010/1‑34 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGc > 1:10690846/1‑34 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGA < 1:2492371/35‑1 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGA < 1:3276690/35‑1 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGAg < 1:2059442/35‑2 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGAC < 1:11202547/35‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGgat > 1:5327745/1‑32 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGCCT > 1:2822628/1‑35 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGAgt < 1:18724318/35‑3 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGAgt > 1:185481/1‑33 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGAgt > 1:10829043/1‑33 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGAgt > 1:19491014/1‑33 TTAACTGTCCAACTTTTTGGGGTCAGTACAGAtcc < 1:10681568/35‑4 TTAACTGTCCAACTTTTTGGGGTCAGTACAGAgta > 1:16682999/1‑32 TTAACTGTCCAACTTTTTGGGGTCAGTACAGAgta > 1:16104655/1‑32 TTAACTGTCCAACTTTTTGGGGTCAGTACAGACTg > 1:3557506/1‑34 TTAACTGTCCAACTTTTTGGGGTCAGTACAGACTT < 1:17260166/35‑1 TTAACTGTCCAACTTTTTGGGGTCAGTACAGACTT < 1:18240773/35‑1 TTAACTGTCCAACTTTTTGGGGTCAGTACAGACTT < 1:15502902/35‑1 TTAACTGTCCAACTTTTTGGGGTCAGTACAGACTT > 1:12777707/1‑35 ACTGTCCAACTTTTTGGGGTCAGTACAGACTTGGN < 1:16678628/35‑1 ACTGTCCAACTTTTTGGGGTCAGTACAGACTTGGG > 1:11350951/1‑35 ACTGTCCAACTTTTTGGGGTCAGTACAGACTTGGG > 1:743393/1‑35 ACTGTCCAACTTTTTCGGGTCAGTACAGACTTGGG > 1:612560/1‑35 CTGTCCAACTTTTTGGGGTCAGTACAGACTTGGGT < 1:14637174/35‑1 CTGTCCAACTTTTTGGGGTCAGTACAGACTTGGGT < 1:2327384/35‑1 TGTCCAACTTTTTGGGGTCAGTACAGACTTGGGTA < 1:20302536/35‑1 TGTCCAACTTTTTGGGGTCAGTACAGACTTGGGTA > 1:11859688/1‑35 GTCCAACTTTTTGGGGTCAGTACAGACTTGGGTAA < 1:2035601/35‑1 GTCCAACTTTTTGGGGTCAGTACAGACTTGGGTAA < 1:7930162/35‑1 GTCCAACTTTTTGGGGTCAGTACAGACTTGGGTAA > 1:1196079/1‑35 TCCAACTTTTTGGGGTCAGTACAGACTTGGGTAAC > 1:1016137/1‑35 TCCAACTTTTTGGGGTCAGTACAGACTTGGGTAAC < 1:4368180/35‑1 TCCAACTTTTTGGGGTCAGTACAGACTTGGGTAAC < 1:10528609/35‑1 TCCAACTTTTTGGGGTCAGTACAGACTTGGGTAAC < 1:3679766/35‑1 TCCAACTTTTTGGGGTCAGTACAGACTTGGGTAAC > 1:16213340/1‑35 CAACTTTTTTGGGTCAGTACAGACTTGGGTAACCA > 1:8766938/1‑35 CAACTTTTTGGGGTCAGTACAGACTTGGGTAACCA > 1:10931319/1‑35 CAACTTTTTGGGGTCAGTACAGACTTGGGTAACCA > 1:15599971/1‑35 AACTTTTTGGGGTCAGTACAGACTTGGGTAACCAT > 1:2853941/1‑35 ACTTTTTGGGGTCAGTACAGACTTGGGTAACCATC < 1:18210954/35‑1 ACTTTTTGGGGTCAGTACAGACTTGGGTAACCATC < 1:9025197/35‑1 CTTTTTGGGGTCAGTACAGACTTGGGTAACCATCG < 1:14983914/35‑1 CTTTTTGGGGTCAGTACAGACTTGGGTAACCATCG < 1:7598149/35‑1 CTTTTTGGGGTCAGTACAGACTTGGGTAACCATCG < 1:13174939/35‑1 CTTTTTGGGGTCAGTACAGACTTGGGTAACCATCG < 1:11501802/35‑1 TTTTTGGGGTCAGTACAGACTTGGGTAACCATCGA > 1:14810088/1‑35 TTTTTGGGGTCAGTACAGACTTGGGTAACCATCGA > 1:8475019/1‑35 TTTTTGGGGTCAGTACAGACTTGGGTAACCATCGA < 1:13473251/35‑1 TTTTGGGGTCAGTACAGACTTGGGTAACCATCGAT < 1:18509776/35‑1 TTTTGGGGTCAGTACAGACTTGGGTAACCATCGAT < 1:704330/35‑1 TTTGGGGGTCAGTACAGACTTGGGTAACCATCGAT < 1:11134821/35‑1 TTTGGGGTCAGTACAGACTTGGGTAACCATCGATT > 1:9456877/1‑35 TTGGGGTCAGTACAGACTTGGGTAACCATCGATTT < 1:16510729/35‑1 TTGGGGTCAGTACAGACTTGGGTAACCATCGATTT < 1:14410248/35‑1 TGGGGTCAGTACAGACTTGGGTAACCATCGATTTT > 1:10055194/1‑35 TGGGGTCAGTACAGACTTGGGTAACCATCGATTTT < 1:19239536/35‑1 GGGGTCAGTACAGACTTGGGTAACCATCGATTTTG < 1:6854847/35‑1 GGGGTCAGTACAGACTTGGGTAACCATCGATTTTG < 1:6810547/35‑1 GGGGTCAGTACAGACTTGGGTAACCATCGATTTTG < 1:5488022/35‑1 GGGGTCAGTACAGACTTGGGTAACCATCGATTTTG < 1:12142496/35‑1 GGGTCAGTACAGACTTGGGTAACCATCGATTTTGC < 1:9132018/35‑1 GGGTCAGTACAGACTTGGGTAACCATCGATTTTGC < 1:1756292/35‑1 GGGTCAGTACAGACTTGGGTAACCATCGATTTTGC < 1:13885134/35‑1 GTCAGTACAGACTTGGGTAACCATCGATTTTGCAA > 1:4345834/1‑35 GTCAGTACAGACTTGGGTAACCATCGATTTTGCAA < 1:19316722/35‑1 GTCAGTACAGACTTGGGTAACCATCGATTTTGCAA < 1:14433775/35‑1 GTCAGTACAGACTTGGGTAACCATCGATTTTGCAA > 1:6523920/1‑35 GTCAGTACAGACTTGGGTAACCATCGATTTTGCAA < 1:8569431/35‑1 GTCAGTACAGACTTGGGTAACCATCGATTTTGCAA > 1:6927628/1‑35 GTCAGTACAGACTTGGGGAACCATCGATTTTGCAA > 1:19752327/1‑35 TCAGTACAGACTTGGGTAACCATCGATTTTGCAAT > 1:19319158/1‑35 TCAGTACAGACTTGGGTAACCATCGATTTTGCAAT > 1:12329930/1‑35 TCAGTACAGACTTGGGTAACCATCGATTTTGAAAT < 1:13969996/35‑1 CAGTACAGACTTGTGTAACCATCGATTTTGCAATA > 1:2907459/1‑35 CAGTACAGACTTGGGTAACCATCGATTTTGCAATA < 1:937952/35‑1 AGTACAGACTTGGGTAACCATCGATTTTGCAATAA > 1:17099102/1‑35 AGTACAGACTTGGGTAACCATCGATTTTGCAATAA > 1:7896792/1‑35 AGTACAGACTTGGGTAACCATCGATTTTGCAATAA < 1:2009210/35‑1 GTACAGACTTGGGTAACCATCGATTTTGCAATAAT < 1:11568326/35‑1 GTACAGACTTGGGTAACCATCGATTTTGCAATAAT < 1:7703147/35‑1 TACAGACTTGGGTAACCATTGATTTTGCAATAATG > 1:14182493/1‑35 ACAGACTTGGGTAACCATCGATTTTGCAATAATGG > 1:236424/1‑35 CAGACTTGGGTAACCATCGATTTTGCAATAATGGA < 1:14544597/35‑1 CAGACTTGGGTAACCATCGATTTTGCAATAATGGA < 1:15021309/35‑1 CAGACTTGGGTAACCATCGATTTTGCAATAATGGA < 1:16910189/35‑1 CAGACTTGCGTAACCATCGATTTTGCAATAATGGA > 1:12596981/1‑35 CAGACTTGCGTAACCATCGATTTTGCAATAATGGA > 1:18052006/1‑35 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652500‑3652533 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGACTTGGGTAACCATCGATTTTGCAATAATGGAA > REL606/3901457‑3901490 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |