New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3040639 | 97 (0.940) | 17 (0.220) | 5/36 | NT | 21.2% | coding (648/810 nt) | pppA | bifunctional prepilin leader peptidase/ methylase |
? | REL606 | 3224905 = | 54 (0.700) | coding (858/2517 nt) | yraJ | predicted outer membrane protein |
Only 100 of 142 total aligned reads displayed.
TCGCTTCCGACGATAATATGCTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAA > REL606/3224871‑3224939 | tCGCTTCCGACGATAATATGCTGCCAAAcagccag > 1:18568190/1‑35 (MQ=255) cGCTTCCGACGATAATATGCTGCCAAAcagccagc > 1:1122709/1‑35 (MQ=255) gCTTCCGACGATAATATGCTGCCAAACAGCCAgcg > 1:8549807/1‑35 (MQ=255) gCTTCCGACGATAATATGCTGCCAAACAGCCAgcg > 1:14013556/1‑35 (MQ=255) gCTTCCGACGATAATATGCTGCCAAACAGCCAgcg > 1:3601457/1‑35 (MQ=255) cTTCCGACGATAATATGCTGCCAAACAGCCAgcgc > 1:12586932/1‑35 (MQ=255) ttCCGACGATAATATGCTGCCAAACAGCCAGcgcg > 1:17713547/1‑35 (MQ=255) ttCCGACGATAATATGCTGCCAAACAGCCAGcgcg > 1:6167562/1‑35 (MQ=255) tCCGACGATAATATGCTGCCAAACAGCCAGCGCgg > 1:19023635/1‑35 (MQ=255) tCCGACGATAATATGCTGCCAAACAGCCAGCGCgg > 1:19586916/1‑35 (MQ=255) tCCGACGATAATATGCTGCCAAACAGCCAGCGCgg > 1:5182034/1‑35 (MQ=255) tCCGACGATAATATGCTGCCAAACAGCCAGCGCgg > 1:5574879/1‑35 (MQ=255) ccGACGATAATATGCTGCCAAACAGCCAGCGCGGa > 1:20520118/1‑35 (MQ=255) ccGACGATAATATGCTGCCAAACAGCCAGCGCGGa > 1:19685706/1‑35 (MQ=255) cgacgaTAATATGCTGCCAAACAGCCAGCGCGGAt > 1:5784507/1‑35 (MQ=255) cgacgaTAATATGCTGCCAAACAGCCAGCGCGGAt > 1:16937650/1‑35 (MQ=255) cgacgaTAATATGCTGCCAAACAGCCAGCGCGGAt > 1:4090416/1‑35 (MQ=255) cgacgaTAATATGCTGCCAAACAGCCAGCGCGGAt > 1:11290503/1‑35 (MQ=255) cgacgaTAATATGCTGCCAAACAGCCAGCGCGGAt > 1:8728910/1‑35 (MQ=255) gacgaTAATATGCTGCCAAACAGCCAGCGCGGAtt > 1:3108314/1‑35 (MQ=255) gacgaTAATATGCTGCCAAACAGCCAGCGCGGAtt > 1:9576829/1‑35 (MQ=255) gacgaTAATATGCTGCCAAACAGCCAGCGCGGAtt > 1:16622907/1‑35 (MQ=255) acgaTAATATGCTGCCAAACAGCCAGCGCGGAttt > 1:579552/1‑35 (MQ=255) acgaTAATATGCTGCCAAACAGCCAGCGCGGAttt > 1:5885936/1‑35 (MQ=255) acgaTAATATGCTGCCAAACAGCCAGCGCGGAttt > 1:18506312/1‑35 (MQ=255) cgaTAATATGCTGCCAAACAGCCAGCGCGGATTTg > 1:10149991/1‑35 (MQ=255) gaTAATATGCTGCCAAACAGCCAGCGCGGATTTGc > 1:4788117/1‑35 (MQ=255) gaTAATATGCTGCCAAACAGCCAGCGCGGATTTGc > 1:9613237/1‑35 (MQ=255) gaTAATATGCTGCCAAACAGCCAGCGCGGATTTGc > 1:13866862/1‑35 (MQ=255) ataataTTCTGCCAAACAGCCAGCGCGGATTTGcc > 1:18244603/1‑35 (MQ=255) ataataTGCTGCCAAACAGCCAGCGCGGATTTGcc > 1:7953419/1‑35 (MQ=255) taataTGCTGCCAAACAGCCAGCGCGGATTTGccc > 1:10196063/1‑35 (MQ=255) aataTGCTGCCAAACAGCCAGCGCGGATTTGcccc > 1:7473548/1‑35 (MQ=255) aataTGCTGCCAAACAGCCAGCGCGGATTTGcccc > 1:8416449/1‑35 (MQ=255) aataTGCTGCCAAACAGCCAGCGCGGATTTGcccc > 1:1748769/1‑35 (MQ=255) atatGCTGCCAAACAGCCAGCGCGGATTTGCCCCa > 1:19581981/1‑35 (MQ=255) atatGCTGCCAAACAGCCAGCGCGGATTTGCCCCa > 1:4697642/1‑35 (MQ=255) tatGCTGCCAAACAGCCAGCGCGGATTTGCCCCaa > 1:13837301/1‑35 (MQ=255) tatGCTGCCAAACAGCCAGCGCGGATTTGCCCCaa > 1:17083534/1‑35 (MQ=255) acgcccccaaccagccaGCGCGGATTTGCCCCAAc < 1:13334631‑M2/18‑1 (MQ=255) acccccccacccagccaGCGCGGATTTGCCCCAAc < 1:14210319‑M2/18‑1 (MQ=255) tgctgcCAAACAGCCAGCGCGGATTTGCCCCAACg > 1:15703276/1‑35 (MQ=255) tgctgcCAAACAGCCAGCGCGGATTTGCCCCAACg > 1:7656087/1‑35 (MQ=255) gctgcCAAACAGCCGGCGCGGATTTGCCCCAACgg > 1:15128009/1‑35 (MQ=255) gctgcCAAACAGCCAGCGCGGATTTGCCCCAACgg > 1:15715871/1‑35 (MQ=255) gctgcCAAACAGCCAGCGCGGATTTGCCCCAACgg > 1:15202046/1‑35 (MQ=255) gcccccacccagccaGCGCGGATTTGCCCCAACgg < 1:10627634‑M2/20‑1 (MQ=255) gcccccacccagccaGCGCGGATTTGCCCCAACgg < 1:5717603‑M2/20‑1 (MQ=255) gcacccacccagccaGCGCGGATTTGCCCCAACgg < 1:12857338‑M2/20‑1 (MQ=255) ccccccacccagccaGCGCGGATTTGCCCCAACgg < 1:17683028‑M2/20‑1 (MQ=255) ccccccacccagccaGCGCGGATTTGCCCCAACgg < 1:9301780‑M2/20‑1 (MQ=255) ccccccacccagccaGCGCGGATTTGCCCCAACgg < 1:3703897‑M2/20‑1 (MQ=255) ctgcCAAACAGCCAGCGCGGATTTGCCCCAACGGt > 1:14405274/1‑35 (MQ=255) ctgcCAAACAGCCAGCGCGGATTTGCCCCAACGGt > 1:13969488/1‑35 (MQ=255) cccccacccagccaGCGCGGATTTGCCCCAACGGt < 1:19894792‑M2/21‑1 (MQ=255) cccccacccagccaGCGCGGATTTGCCCCAACGGt < 1:1692492‑M2/21‑1 (MQ=255) tgcCAAACAGCCAGCGCGGATTTGCCCCAACggga > 1:8193729/1‑33 (MQ=255) ccccccccagccaGCGCGGATTTGCCCCAACGGTa < 1:4383169‑M2/22‑1 (MQ=255) ccccacccagccaGCGCGGATTTGCCCCAACGGTa < 1:17235531‑M2/22‑1 (MQ=255) gcCAAACAGCCAGCGCGGATTTGCCCCAACGGTAc > 1:6650504/1‑35 (MQ=255) cccacccagccaGCGCGGATTTGCCCCAACGGTAc < 1:4475286‑M2/23‑1 (MQ=255) cccacccagccaGCGCGGATTTGCCCCAACGGTAc < 1:2481547‑M2/23‑1 (MQ=255) ccAAACAGCCAGCGCGGATTTGCCCCAACGGTAcg > 1:1696769/1‑35 (MQ=255) cAAACAGCCAGCGCGGATTTGCCCCAACGGTAcgc > 1:8801300/1‑35 (MQ=255) cAAACAGCCAGCGCGGATTTGCCCCAACGGTAcgc > 1:12590772/1‑35 (MQ=255) acccagccaGCGCGGATTTGCCCCAACGGTAcgcg < 1:5540549‑M2/26‑1 (MQ=255) aaaCAGCCAGCGCGGATTTGCCCCAACGGTAcgcg > 1:11083235/1‑35 (MQ=255) cccagccaGCGCGGATTTGCCCCAACGGTACGCgg < 1:17896658‑M2/27‑1 (MQ=255) cccagccaGCGCGGATTTGCCCCAACGGTACGCgg < 1:3207811‑M2/27‑1 (MQ=255) cccagccaGCGCGGATTTGCCCCAACGGTACGCgg < 1:17943456‑M2/27‑1 (MQ=255) cccagccaGCGCGGATTTGCCCCAACGGTACGCgg < 1:16312711‑M2/27‑1 (MQ=255) accagccaGCGGGGATTTGCCCCAACGGTACGCgg < 1:7532043‑M2/27‑1 (MQ=255) accagccaGCGCGGATTTGCCCCAACGGTACGCgg < 1:3805004‑M2/27‑1 (MQ=255) aaCAGCCAGCGCGGATTTTCCCCAACGGTACGCgg > 1:9271411/1‑35 (MQ=255) ccagccaGCGCGGATTTGCCCCAACGGTACGCGGt < 1:19870804‑M2/28‑1 (MQ=255) ccagccaGCGCGGATTTGCCCCAACGGTACGCGGt < 1:1487574‑M2/28‑1 (MQ=255) cagccaGCGCGGATTTGCCCCAACGGTACGCGGTa > 1:8056085‑M2/7‑35 (MQ=255) cagccaGCGCGGATTTGCCCCAACGGTACGCGGTa < 1:6066684‑M2/29‑1 (MQ=255) agccaGCGCGGATTTGCCCCAACGGTACGCGGTAt > 1:5659997‑M2/6‑35 (MQ=255) agccaGCGCGGATTTGCCCCAACGGTACGCGGTAt > 1:18040797‑M2/6‑35 (MQ=255) agccaGCGCGGATTTGCCCCAACGGTACGCGGTAt > 1:18638649‑M2/6‑35 (MQ=255) gccaGCGCGGATTTGCCCCAACGGTACGCGGTATc < 1:16169703‑M2/31‑1 (MQ=255) gccaGCGCGGATTTGCCCCAACGGTACGCGGTATc < 1:11902399‑M2/31‑1 (MQ=255) gccaGCGCGGATTTGCCCCAACGGTACGCGGTATc > 1:5386961‑M2/5‑35 (MQ=255) gccaGCGCGGATTTGCCCCAACGGTACGCGGTATc < 1:15449437‑M2/31‑1 (MQ=255) ccaGCGCGGATTTGCCCCAACGGTACGCGGTATCg < 1:10100476‑M2/32‑1 (MQ=255) ccaGCGCGGATTTGCCCCAACGGTACGCGGTATCg < 1:2370892‑M2/32‑1 (MQ=255) ccaGCGCGGATTTGCCCCAACGGTACGCGGTATCg < 1:8208414‑M2/32‑1 (MQ=255) ccaGCGCGGATTTGCCCCAACGGTACGCGGTATCg < 1:3055189‑M2/32‑1 (MQ=255) ccaGCGCGGATTTGCCCCAACGGTACGCGGTATCg < 1:13344123‑M2/32‑1 (MQ=255) ccaGCGCGGATTTGCCCCAACGGTACGCGGTATCg < 1:11657809‑M2/32‑1 (MQ=255) caGCGCGTATTTGCCCCAACGGTACGCGGTATCGc > 1:465975‑M2/3‑35 (MQ=255) caGCGCGGATTTGCCCCAACGGTACGCGGTATCGc > 1:864839‑M2/3‑35 (MQ=255) caGCGCGGATTTGCCCCAACGGTACGCGGTATCGc > 1:6660442‑M2/3‑35 (MQ=255) aGCGCGGATTTGCCCCAACGGTACGCGGTATCGCa > 1:8080059‑M2/2‑35 (MQ=255) aGCGCGGATTTGCCCCAACGGTACGCGGTATCGCa > 1:17669725‑M2/2‑35 (MQ=255) gcgcGGATTTGCCCCAACGGTACGCGGTATCGCaa > 1:349487/1‑35 (MQ=255) gcgcGGATTTGCCCCAACGGTACGCGGTATCGCaa > 1:2651827/1‑35 (MQ=255) gcgcGGATTTGCCCCAACGGTACGCGGTATCGCaa < 1:16074502/35‑1 (MQ=255) gcgcGGATTTGCCCAAACGGTACGCGGTATCGCaa < 1:10541256/35‑1 (MQ=255) | TCGCTTCCGACGATAATATGCTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAA > REL606/3224871‑3224939 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |