New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 588495 =NA (NA)5 (0.050) 4/44 NT NA noncoding (1/1977 nt) IS150 repeat region
?REL606 589936 = NA (NA)noncoding (387/768 nt) IS1 repeat region

Only 100 of 249 total aligned reads displayed.

ATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/588521‑588495
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  REL606/589936‑589969
                                                             
nnCGTNNAACAAAATGGGTGCAGTACACTGTTCGT                            <  1:19895980/33‑1
       AACAAAATGGGTGCAGTACACTGTTCGTCCATTTC                     <  1:140212/35‑1
                       cACACTGTTCGTCAATTTCCGCGCAGACGATGACG     <  1:3920168/34‑1
                        caACTGTTCGTCCATTTCCGCGCAGACGATGACGT    <  1:17564121/33‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGGTGACGTC   <  1:12298214/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGcc   >  1:17893363/1‑33
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   >  1:14258073/1‑35
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   >  1:14457921/1‑35
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   >  1:4357812/1‑35
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:15187023/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:3604858/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:3114324/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   >  1:2945829/1‑35
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:15675593/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:2280101/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:16227682/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   >  1:20531887/1‑35
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   >  1:1655822/1‑35
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:16753513/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:19064989/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   >  1:18551641/1‑35
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:17847944/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:9622021/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:10321017/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:9151283/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   >  1:10590189/1‑35
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   >  1:10656144/1‑35
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   >  1:9022300/1‑35
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:882021/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:8198480/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   >  1:810977/1‑35
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   >  1:711338/1‑35
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   >  1:6861417/1‑35
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:675807/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:6100320/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:593843/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:12729544/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:12788813/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:5320666/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:5084583/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:4906721/35‑1
                         CACTGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:4801526/35‑1
                         CACTGTTCGTCCATTTCAGCGCAGACGATGACGTC   <  1:27802/35‑1
                         CACGGTTCGTCCATTTCCGCGCAGACGATGACGTC   <  1:4407591/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATTACGTCA  >  1:20017148/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACTTCA  >  1:10030872/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGaga  >  1:16526428/1‑32
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCN  <  1:8878426/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:4638258/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:13776562/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:13520212/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:1331527/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:5375836/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:5489806/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:124486/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:11773145/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:11737447/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:1161069/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:7433167/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:7594600/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:771808/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:1139635/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:11207756/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:8571387/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:8641076/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:10914041/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:8966240/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:1080301/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:10444940/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:9282621/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:9568080/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:17674186/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:17663617/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:18040409/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:18349710/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:17507247/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:18932561/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:17263305/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:19396966/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:19624671/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:16678525/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:20516110/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:1614388/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:2544497/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:2607118/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:15561648/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:328477/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:3478055/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:15398256/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:3694303/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:14765894/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:412858/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:14623921/35‑1
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  1:1413676/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACGGCA  >  1:17029893/1‑35
                          ACTGTTCGTCCATTTCCGCGCAGACGATGACCTCA  >  1:1148329/1‑35
                          ACTGTTCGTCAATTTCCGCGCAGACGATGACGTCA  <  1:15597014/35‑1
                          ACTGTTCGCCCATTTCCGCGCAGACGATGACGTCA  <  1:13431848/35‑1
                          ACTGTTCCTCCATTTCCGCGCAGACGATGACGTCA  >  1:15933530/1‑35
                          ACTGTCCGTCCATTTCCGCGCAGACGATGACGTCA  <  1:5543345/35‑1
                                                             
ATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/588521‑588495
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCTGTTCGTCCATTTCCGCGCAGACGATGACGTCA  >  REL606/589936‑589969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.