New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1036071104 (1.010)18 (0.180) 6/46 NT 17.6% intergenic (+43/+33) ycbG/ompA hypothetical protein/outer membrane protein A (3a;II*;G;d)
?REL606 = 2316746 69 (0.700)coding (216/891 nt) yfbH hypothetical protein

Only 100 of 134 total aligned reads displayed.

TGCTGCGCTCAAACGCGGCATCGCTTTATGGCTGGGATATTTTACTGGCAGGTACGGCCTGGCCAGGT  >  REL606/2316712‑2316779
                                  |                                 
tgctgcGCTCAAACGCGGCATCGCTTTATGGCTgg                                   <  1:4342194/35‑1 (MQ=255)
tgctgcGCTCAAACGCGGCATCGCTTTATGGCTgg                                   >  1:8151683/1‑35 (MQ=255)
tgctgcGCTCAAACGCGGCATCGCTTTATGGCTgg                                   <  1:16313995/35‑1 (MQ=255)
tgctgcGCTCAAACGCGGCATCGCTTTATGGCTgg                                   <  1:8433555/35‑1 (MQ=255)
 gctgcGCTCAAACGCGGCATCGCTTTATGGCTGGg                                  <  1:1445528‑M2/35‑2 (MQ=255)
 gctgcGCTCAAACGCGGCATCGCTTTATGGCTGGg                                  <  1:13701810‑M2/35‑2 (MQ=255)
 gctgcGCTCAAACGCGGCATCGCTTTATGGCTGGg                                  <  1:9172959‑M2/35‑2 (MQ=255)
 gctgcGCTCAAACGCGGCATCGCTTTATGGCTGGg                                  <  1:20407724‑M2/35‑2 (MQ=255)
  ctgcGCTCAAACGCGGCATCGCTTTATGGCTGGgg                                 <  1:12959373‑M2/35‑3 (MQ=255)
  ctgcGCTCAAACGCGGCATCGCTTTATGGCTGGgg                                 <  1:1092614‑M2/35‑3 (MQ=255)
   tgcGCTCAAACGCGTCATCGCTTTATGGCTGGggg                                <  1:18384630‑M2/35‑4 (MQ=255)
   tgcGCTCAAACGCGGCATCGCTTTATGGCTGGggg                                <  1:13104275‑M2/35‑4 (MQ=255)
   tgcGCTCAAACGCGGCATCGCTTTATGGCTGGggg                                <  1:4147445‑M2/35‑4 (MQ=255)
   tgcGCTCAAACCCGGCATCGCTTTATGGCTGGggg                                <  1:19546198‑M2/35‑4 (MQ=255)
    gcgcTCAAACGCGGCATCGCTTTATGGCTGGgggg                               <  1:16532210‑M2/35‑5 (MQ=255)
    gcgcTCAAACGCGGCATCGCTTTATGGCTGGgggg                               <  1:3436941‑M2/35‑5 (MQ=255)
     cgcTCAAACGCGGCATCGCTTTATGGCTNGggggn                              <  1:342741‑M2/35‑6 (MQ=255)
     cgcTCAAACGCGGCATCGCTTTATGGCTGGGatat                              <  1:11738238/35‑1 (MQ=255)
     cgcTCAAACGCGGCATCGCTTTATGGCTGGGatat                              <  1:2323457/35‑1 (MQ=255)
     cgcTCAAACGCGGCATCGCTTTATGGCTGGGatat                              <  1:15683208/35‑1 (MQ=255)
     cgcTCAAACGCGGCATCGCTTTATGGCTGGGatat                              <  1:3887602/35‑1 (MQ=255)
      gcTCAAACGCGGCATCGCTTTATGGCTGGgggggt                             <  1:7579882‑M2/35‑7 (MQ=255)
      gcTCAAACGCGGCATCGCTTTATGGCTGGgggatt                             <  1:10745308‑M2/35‑7 (MQ=255)
      gcTCAAACGCGGCATCGCTTTATGGCTGGgggatt                             <  1:4047775‑M2/35‑7 (MQ=255)
       cTCAAACGCGGCATCGCTTTATGGCTGGgggattt                            <  1:5144373‑M2/35‑8 (MQ=255)
       cTCAAACGCGGCATCGCTTTATGGCTGGGATAttt                            <  1:17721900/35‑1 (MQ=255)
       cTCAAACGCGGCATCGCTTTATGGCTGGGATAttt                            <  1:10126103/35‑1 (MQ=255)
        tCAAACGCGGCATCGCTTTATGGCTGGggggtttt                           <  1:3697308‑M2/35‑9 (MQ=255)
        tCAAACGCGGCATCGCTTTATGGCTGGgggatttt                           <  1:9444665‑M2/35‑9 (MQ=255)
        tCAAACGCGGCATCGCTTTATGGCTGGGATAtttt                           <  1:3164475/35‑1 (MQ=255)
         cAAACGCGGCATCGCTTTATGGCTGGggggttttt                          <  1:7713578‑M2/35‑10 (MQ=255)
         cAAACGCGGCATCGCTTTATGGCTGGGATATTTTa                          <  1:9897120/35‑1 (MQ=255)
          aaaCGCGGCATCGCTTTATGGCTGGggggtttttt                         <  1:3426826‑M2/35‑11 (MQ=255)
          aaaCGCGGCATCGCTTTATGGCTGGgggatttttt                         <  1:13744137‑M2/35‑11 (MQ=255)
          aaaCGCGGCATCGCTTTATGGCTGGGATATTTTAc                         <  1:20375353/35‑1 (MQ=255)
          aaaCGCGGCATCGCTTTATGGCTGGGATATTTTAc                         <  1:15822717/35‑1 (MQ=255)
          aaaCGCGGCATCGCTTTATGGCTGGGATATTTTAc                         <  1:12300485/35‑1 (MQ=255)
           aaCGCGGCATCGCTTTATGGCTGGggggtttttct                        <  1:3556755‑M2/35‑12 (MQ=255)
           aaCGCGGCATCGCTTTATGGCTGGGATATTTTACt                        <  1:18957704/35‑1 (MQ=255)
           aaCGCGGCATCGCTTTATGGCTGGGATATTTTACt                        <  1:18525111/35‑1 (MQ=255)
           aaCGCGGCATCACTTTATGGCTGGGATATTTTACt                        <  1:14010413/35‑1 (MQ=255)
            aCGCGGCATCGCTTTATGGCTGGggggtttttttt                       <  1:5212776‑M2/35‑13 (MQ=255)
            aCGCGGCATCGCTTTATGGCTGGggggtttttttg                       <  1:9622703‑M2/35‑13 (MQ=255)
            aCGCGGCATCGCTTTATGGCTGGggggtttttttg                       <  1:12711325‑M2/35‑13 (MQ=255)
            aCGCGGCATCGCTTTATGGCTGGGATATTTTACTg                       <  1:3509709/35‑1 (MQ=255)
            aCGCGGCATCGCTTTATGGCTGGGATATTTTACTg                       <  1:1112615/35‑1 (MQ=255)
            aCGCGGCATCGCTTTATGGCTGGGATATTTTACTg                       <  1:6666467/35‑1 (MQ=255)
            aCGCGGCATCGCTTTATGGCTGGGATATTTTACTg                       <  1:276379/35‑1 (MQ=255)
             cgcgGCATCGCTTTATGGCTGGGATATTTTACTgg                      <  1:14106126/35‑1 (MQ=255)
             cgcgGCATCGCTTTATGGCTGGGATATTTTACTgg                      <  1:1051178/35‑1 (MQ=255)
             cgcgGCATCGCTTTATGGCTGGGATATTTTACTgg                      <  1:9732080/35‑1 (MQ=255)
              gcgGCATCGCTTTATGGCTGGggggttttttttgt                     <  1:10539573‑M2/35‑15 (MQ=255)
              gcgGCATCGCTTTATGGCTGGggggttttttttgg                     <  1:4701778‑M2/35‑15 (MQ=255)
              gcgGCATCGCTTTATGGCTGGggggttttttttgc                     <  1:5987452‑M2/35‑15 (MQ=255)
              gcgGCATCGCTTTATGGCTGGGATATTTTACTGGc                     <  1:18522523/35‑1 (MQ=255)
               cgGCATCGCTTTATGGCTGGGATATTTTACTGGCa                    <  1:19449409/35‑1 (MQ=255)
               cgGCATCGCTTTATGGCTGGGATATTTTACTGGCa                    <  1:15193463/35‑1 (MQ=255)
                ggCATCGCTTTATGGCTGGGATATTTTACTGGCAg                   <  1:2612886/35‑1 (MQ=255)
                ggCATCGCTTTATGGCTGGGATATTTTACTGGCAg                   <  1:15833132/35‑1 (MQ=255)
                 gCATCGCTTTATGGCTGGGCTATTTTACTGGCAgg                  <  1:18157981/35‑1 (MQ=255)
                 gCATCGCTTTATGGCTGGGATATTTTACTGGCAgg                  <  1:5552280/35‑1 (MQ=255)
                 gCATCGCTTTATGGCTGGGATATTTTACTGGCAgg                  <  1:5781253/35‑1 (MQ=255)
                  cATCGCTTTATGGCTGGGATATTTTACTGGCAGGt                 <  1:9877413/35‑1 (MQ=255)
                  cATCGCTTTATGGCTGGGATATTTTACTGGCAGGt                 <  1:20420874/35‑1 (MQ=255)
                  cATCGCTTTATGGCTGGGATATTTTACTGGCAGGt                 <  1:11148943/35‑1 (MQ=255)
                   aTCGCTTTATGGCTGGGATATTTTACTGGCAGGTa                <  1:4340404/35‑1 (MQ=255)
                   aTCGCTTTATGGCTGGGATATTTTACTGGCAGGTa                <  1:17881065/35‑1 (MQ=255)
                   aTCGCTTTATGGCTGGGATATTTTACTGGCAGGTa                <  1:18665550/35‑1 (MQ=255)
                   aTCGCTTTATGGCTGGGATATTTTACTGGCAGGTa                <  1:15173638/35‑1 (MQ=255)
                    tCGCTTTATGGCTGGGATATTTTACTGGCAGGTAc               <  1:17088474/35‑1 (MQ=255)
                    tCGCTTTATGGCTGGGATATTTTACTGGCAGGTAc               <  1:16639549/35‑1 (MQ=255)
                    tCGCTTTATGGCTGGGATATTTTACTGGCAGGTAc               <  1:13360894/35‑1 (MQ=255)
                    tCGCTTTATGGCTGGGATATTTTACTGGCAGGTAc               <  1:4740272/35‑1 (MQ=255)
                     cGCTTTATGGCTGGGATATTTTACTGGCAGGTACg              <  1:6033070/35‑1 (MQ=255)
                     cGCTTTATGGCTGGGATATTTTACTGGCAGGTACg              <  1:16588082/35‑1 (MQ=255)
                     cGCTTTATGGCTGGGATATTTTACTGGCAGGTACg              <  1:16150878/35‑1 (MQ=255)
                      gCTTTATGGCTGGGATATTTTACTGGCAGGTACgg             <  1:16290476/35‑1 (MQ=255)
                      gCTTTATGGCTGGGATATTTTACTGGCAGGTACgg             <  1:1717859/35‑1 (MQ=255)
                      gCTTTATGGCTGGGATATTTTACTGGCAGGTACgg             <  1:20314235/35‑1 (MQ=255)
                       cTTTATGGCTGGGATATTTTACTGGCAGGTACGGc            <  1:11197349/35‑1 (MQ=255)
                       cTTTATGGCTGGGATATTTTACTGGCAGGTACGGc            <  1:9188369/35‑1 (MQ=255)
                         ttATGGCTGGGATATTTTACTGGCAGGTACGGCCt          <  1:17247379/35‑1 (MQ=255)
                         ttATGGCTGGGATATTTTACTGGCAGGTACGGCCt          <  1:8388224/35‑1 (MQ=255)
                         ttATGGCTGGGATATTTTACTGGCAGGTACGGCCt          <  1:14522574/35‑1 (MQ=255)
                          tATGGCTGGGATATTTTACTGGCAGGTACGGCCTg         <  1:2696774/35‑1 (MQ=255)
                          tATGGCTGGGATATTTTACTGGCAGGTACGGCCTg         <  1:6387579/35‑1 (MQ=255)
                          tATGGCTGGGATATTTTACTGGCAGGTACGGCCTg         <  1:17577884/35‑1 (MQ=255)
                           aTGGCTGGGATATTTTACTGGCAGGTACGGCCTgg        <  1:18819368/35‑1 (MQ=255)
                            tGGCTGGGATATTTTACTGGCAGGTACGGCCTGGc       <  1:7644393/35‑1 (MQ=255)
                            tGGCTGGGATATTTTACTGGCAGGTACGGCCTGGc       <  1:10006892/35‑1 (MQ=255)
                             ggCTGGGATATTTTACTGGCAGGTACGGCCTGGcc      <  1:11206127/35‑1 (MQ=255)
                             ggCTGGGATATTTTACTGGCAGGTACGGCCTGGcc      <  1:18197522/35‑1 (MQ=255)
                             ggCTGGGATATTTTACTGGCAGGTACGGCCTGGcc      <  1:10047125/35‑1 (MQ=255)
                              gCTGGGATATTTTACTGGCAGGTACGGCCTGGCCa     <  1:12216495/35‑1 (MQ=255)
                              gCTGGGATATTTTACTGGCAGGTACGGCATGGCCa     <  1:669722/35‑1 (MQ=255)
                              gCTGGGATATTTTACTGGCAGGGGGGGCCTCGccc     >  1:6967713/1‑34 (MQ=12)
                               cTGGGATATTTTACTGGCAGGTACGGCCTGGCCAg    <  1:19494777/35‑1 (MQ=255)
                                tGGGATATTTTACTGGCAGGTACGGCCTGGCCAgg   <  1:12261018/35‑1 (MQ=255)
                                tGGGATATTTTACTGGCAGGTACGGCCTGGCCAgg   <  1:5654776/35‑1 (MQ=255)
                                 gggATATTTTACTGGCAGGTACGGCCTGGCCAGGt  <  1:8518417/35‑1 (MQ=255)
                                  |                                 
TGCTGCGCTCAAACGCGGCATCGCTTTATGGCTGGGATATTTTACTGGCAGGTACGGCCTGGCCAGGT  >  REL606/2316712‑2316779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.