New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 82013 =70 (0.680)10 (0.160) 3/30 NT 19.5% coding (245/606 nt) leuD isopropylmalate isomerase small subunit
?REL606 3792209 = 39 (0.610)coding (315/414 nt) ECB_03532 hypothetical protein

ATCAGGGCGCTTCCATTTTGCTGGCACGAGAAAACTTCGGCTG‑‑‑‑‑‑‑‑‑  <  REL606/82055‑82013
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcggctgGGTGGGGGA  >  REL606/3792209‑3792217
                                                    
ATCAGTGCGCTTCCATTTTGCTGGCACGAGAAAAC                   >  1:15311420/1‑35
ATCAGGGCGCTTCCATTTTGCTGGCACGAGAAAAC                   >  1:8132901/1‑35
ATCAGGGCGCTTCCATTTTGCTGGCACGAGAAAAC                   >  1:2317190/1‑35
ATCAGGGCGCTTCCATTTTGCTGGCACGAGAAAAC                   >  1:8270531/1‑35
ATCAGGGCGCTTCCATTTTGCTGGCACGAGAAAAC                   <  1:17387250/35‑1
ATCAGGGCGCTTCCATTTTGCTGGCACGAGAAAAC                   <  1:16874735/35‑1
ATCAGGGCGCTTCCATTTTGCTGGCACGAGAAAAC                   <  1:15692224/35‑1
ATCAGGGCGCTTCCATTTTGCTGGCACGAGAAAAC                   >  1:13040350/1‑35
ATCAGGGCGCTTCCATTTTGCTGGCACGAGAAAAC                   >  1:12413626/1‑35
 TCAGGGCGCTTCCATTTTGCTGGCACGAGAAAACT                  >  1:17539658/1‑35
 TCAGGGCGCTTCCATTTTGCTGGCACGAGAAAACT                  <  1:2496046/35‑1
 TCAGGGCGCTTCCATTTTGCTGGCACGAGAAAACT                  <  1:7972499/35‑1
 TCAGGGCGCTTCCATTTTGCTGGCACGAGAAAACT                  >  1:15741644/1‑35
 TCAGGGCGCTTCCATTTTGCTGGCACGAGAAAACT                  <  1:13960695/35‑1
 TCAGGGCGCTTCCATTTTGCTGGCACGAGAAAACT                  >  1:4060093/1‑35
 TCAGGGCGCTTCCATTTTGCTGGCACGAGAAAACT                  >  1:5344391/1‑35
 TCAGGGCGCTTCCATTTTGCTGGCAAGAGAAAACT                  <  1:10712027/35‑1
  CAGGGCGCTTCCATTTTGCTGGCACGAGAAAACTT                 <  1:10059927/35‑1
  CAGGGCGCTTCCATTTTGCTGGCACGAGAAAACTT                 <  1:8245658/35‑1
  CAGGGCGCTTCCATTTTGCTGGCACGAGAAAACTT                 <  1:18113197/35‑1
  CAGGGCGCTTCCATTTTGCTGGCACGAGAAAACTT                 >  1:4645209/1‑35
  CAGGGCGCTTCCATTTTGCTGGCACGAGAAAACTT                 <  1:13558371/35‑1
  CAGGGCGCTTCCATTTTGCTGGCACGAGAAAACTT                 <  1:8482397/35‑1
  CAGGGCGCTTCCATTTTGCTGGCACGAGAAAACTT                 >  1:366018/1‑35
  CAGGGCGCTTCCATTTTGCTGGCACGAGAAAACTT                 >  1:5950785/1‑35
   AGGGCGCTTCCATTTTGCTGGCACGAGAAAACTTC                <  1:6049183/35‑1
   AGGGCGCTTCCATTTTGCTGGCACGAGAAAACTTC                >  1:17245292/1‑35
   AGGGCGCTTCCATTTTGCTGGCACGAGAAAACTTC                <  1:7135025/35‑1
   AGGGCGCTTCCATTTTGCTGGCACGAGAAAACTTC                <  1:18939760/35‑1
   AGGGCGCTTCCATTTTGCTGGCACGAGAAAACTTC                <  1:6680826/35‑1
   AGGGCGCTTCCATTTTGCTGGCACGACAAAACTTC                >  1:11912582/1‑35
   AGGGCGCTTCCATTTCGCTGGCACGAGAAAACTTC                >  1:6077688/1‑35
    GGGCGCTTCCATTTTGCTGGCACGAGAAAACTTCG               >  1:19313335/1‑35
    GGGCGCTTCCATTTTGCTGGCACGAGAAAACTTCG               >  1:5941049/1‑35
    GGGCGCTTCCATTTTGCTGGCACGAGAAAACTTCG               >  1:7926864/1‑35
    GGGCGCTTCCATTTTGCTGGCACGAGAAAACTTCG               <  1:286081/35‑1
     GGCGCTTCCATTTTGCTGGCACGAGAAAACTTCGG              <  1:11367848/35‑1
     GGCGCTTCCATTTTGCTGGCACGAGAAAACTTCGG              <  1:11923141/35‑1
     GGCGCTTCCATTTTGCTGGCACGAGAAAACTTCGG              <  1:4540233/35‑1
     GGCGCTTCCATTTTGCTGGCACGAGAAAACTTCGG              >  1:4108523/1‑35
     GGCGCTTCCATTTTGCTGGCACGAGAAAACTTCGG              <  1:17068752/35‑1
      GCGCTTCCATTTTGCTGGCACGAGAAAACTTCGGC             >  1:18552558/1‑35
       CGCTTCCATTTTGCTGGCACGAGAAACCTTCGGCT            <  1:284561/35‑1
       CGCTTCCATTTTGCTGGCACGAGAAAACTTCGGCT            >  1:19943147/1‑35
       CGCTTCCATTTTGCTGGCACGAGAAAACTTCGGCT            >  1:12170849/1‑35
       CGCTTCCATTTTGCTGGCACGAGAAAACTTCGGCT            >  1:5657788/1‑35
       CGCTTCCATTTTGCTGGCACGAGAAAACTTCGGCT            >  1:668685/1‑35
       CGCTTCCATTTTGCTGGCACGAGAAAACTTCGGCT            >  1:13049587/1‑35
       CGCTTCCATTTTGCTGGCACGAGAAAACTTCGGCT            >  1:13528059/1‑35
       CGCTTCCATTTTGCTGGCACGAGAAAACTTCGGCT            <  1:15561723/35‑1
       CGCTTCCATTTTGCTGGCACGAGAAAACTTCGGCT            <  1:1597175/35‑1
        GCTTCCATTTTGCTGGCACGAGAAAACTTCGGCTG           >  1:5254435/1‑35
        GCTTCCATTTTGCTGGCACGAGAAAACTTCGGCTG           >  1:13598698/1‑35
        GCTTCCATTTTGCTGGCACGAGAAAACTTCGGCTG           >  1:7980116/1‑35
        GCTTCCATTTTGCTGGCACGAGAAAACTTCGGCTG           >  1:20221510/1‑35
        GCTTCCATTTTGCTGGCACGAGAAAACTTCGGCTG           >  1:2972325/1‑35
         CTTCCATTTTGCTGGCACGAGAAAACTTCGGCTGG          >  1:2336841/1‑35
         CTTCCATTTTGCTGGCACGAGAAAACTTCGGCTGG          >  1:918764/1‑35
         CTTCCATTTTGCTGGCACGAGAAAACTTCGGCTGG          >  1:16785434/1‑35
          TTCCATTTTGCTGGCACGAGAAAACTTCGGCTGGG         >  1:2513761/1‑35
           TCCATTTTGCTGGCACGAGAAAACTTCGGCTGGGg        >  1:9638748/1‑34
           TCCATTTTGCTGGCACGAGAAAACTTCGGCTGGGg        >  1:786004/1‑34
             CATTTTGCTGGCACGAGAAAACTTCGGCTGGGgcg      >  1:1234235/1‑32
             CATTTTGCTGGCACGAGAAAACTTCGGCTGGGGGG      >  1:3844906/1‑35
              ATTTTGCTGGCACGAGAAAACTTCGGCTGGGGGGc     >  1:1756571/1‑34
              ATTTTGCTGGCACGAGAAAACTTCGGCTGGGGGGc     >  1:18153296/1‑34
              ATTTTGCTGGCACGAGAAAACTTCGGCTGGGGGGG     >  1:19010381/1‑35
              ATTTTGCTGGCACGAGAAAACTTCGGCTGGGGGGG     >  1:3322749/1‑35
              ATTTTGCTGGCACGAGAAAACTTCGGCTGGGGGGG     >  1:5622200/1‑35
               TTTTGCTGGCACGAGAAAACTTCGGCTGGGGGGG   >  1:835127/1‑34
               TTTTGCTGGCACGAGAAAACTTCGGCTGGGGGGGG    >  1:7376667/1‑35
               TTTTGCTGGCACGAGAAAACTTCGGCTGGGGGGGG    >  1:9385579/1‑35
                TTTGCTGGCACGAGAAAACTTCGGCTGGGGGGGGc   >  1:5673042/1‑34
                TTTGCTGGCACGAGAAAACTTCGGCTGGGGGGGGG   >  1:8243624/1‑35
                TTTGCTGGCACGAGAAAACTTCGGCTGGGGGGGGG   >  1:16490765/1‑35
                 TTGCTGGCACGAGAAAACTTCGGCTGGGGGGGGGc  >  1:3193025/1‑34
                                                    
ATCAGGGCGCTTCCATTTTGCTGGCACGAGAAAACTTCGGCTG‑‑‑‑‑‑‑‑‑  <  REL606/82055‑82013
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcggctgGGTGGGGGA  >  REL606/3792209‑3792217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.