Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 3,894,997 Δ6,460 bp 100% IS150‑mediated rbsD[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3893577–3894996 3901456 6461–7880 51 [46] [0] 180 insJ‑5–[yieO] insJ‑5, insK‑5, rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3652533NA (NA)95 (0.960) 38/46 NT 100% noncoding (1443/1443 nt) IS150 repeat region
?REL606 3901457 = 0 (0.000)coding (963/1428 nt) yieO predicted multidrug or homocysteine efflux system

Only 100 of 180 total aligned reads displayed.

CCACTAATGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAAC  >  REL606/3901423‑3901491
                                  |                                  
gtgtttaactgtccaactttttggggtcagtacag                                    <  1:12785453‑M2/1‑1 (MQ=255)
gtgtttaactgtccaactttttggggtcagtacag                                    >  1:13023974‑M2/35‑35 (MQ=255)
gtgtttaactgtccaactttttggggtcagtacag                                    <  1:13679283‑M2/1‑1 (MQ=255)
gtgtttaactgtccaactttttggggtcagtacag                                    >  1:16530983‑M2/35‑35 (MQ=255)
gtgtttaactgtccaactttttggggtcagtacag                                    >  1:4031172‑M2/35‑35 (MQ=255)
gtgtttaactgtccaactttttggggtcagtacag                                    <  1:18412951‑M2/1‑1 (MQ=255)
gtgtttaactgtccaactttttggggtcagtacag                                    <  1:2431657‑M2/1‑1 (MQ=255)
gtgtttaactgtccaactttttggggtcagtacag                                    <  1:1992758‑M2/1‑1 (MQ=255)
gtgtttaactgtccaactttttggggtcagtacag                                    <  1:9553650‑M2/1‑1 (MQ=255)
gtgtttaactgtccaactttttggggtcagtacag                                    >  1:9849515‑M2/35‑35 (MQ=255)
 tgtttaactttccaactttttggggtcagtacaGa                                   >  1:109099‑M2/34‑35 (MQ=255)
 tgtttaactgtccaactttttggggtcagtacagc                                   >  1:3246610‑M2/34‑34 (MQ=255)
 tgtttaactgtccaactttttggggtcagtacagc                                   >  1:10690846‑M2/34‑34 (MQ=255)
 tgtttaactgtccaactttttggggtcagtacagc                                   >  1:15708287‑M2/34‑34 (MQ=255)
 tgtttaactgtccaactttttggggtcagtacagc                                   >  1:13082010‑M2/34‑34 (MQ=255)
 tgtttaactgtccaactttttggggtcagtacaGa                                   >  1:18149228‑M2/34‑35 (MQ=255)
 tgtttaactgtccaactttttggggtcagtacaGa                                   >  1:12510031‑M2/34‑35 (MQ=255)
  gtttaactgtccaactttttggggtcagtacagag                                  <  1:20524651‑M2/3‑2 (MQ=255)
  gtttaactgtccaactttttggggtcagtacaGAc                                  <  1:11202547‑M2/3‑1 (MQ=255)
  gtttaactgtccaactttttggggtcagtacaGAc                                  <  1:2301884‑M2/3‑1 (MQ=255)
  gtttaactgtccaactttttggggtcagtacaGAc                                  <  1:5528796‑M2/3‑1 (MQ=255)
   tttaactgtccaactttttggggtcagtacaggat                                 >  1:5327745‑M2/32‑32 (MQ=255)
   tttaactgtccaactttttggggtcagtacagagt                                 >  1:185481‑M2/32‑33 (MQ=255)
   tttaactgtccaactttttggggtcagtacagagt                                 >  1:19969590‑M2/32‑33 (MQ=255)
   tttaactgtccaactttttggggtcagtacagagt                                 >  1:546002‑M2/32‑33 (MQ=255)
   tttaactgtccaactttttggggtcagtacagagt                                 <  1:18724318‑M2/4‑3 (MQ=255)
   tttaactgtccaactttttggggtcagtacagagt                                 >  1:10829043‑M2/32‑33 (MQ=255)
   tttaactgtccaactttttggggtcagtacagagt                                 <  1:665986‑M2/4‑3 (MQ=255)
   tttaactgtccaactttttggggtcagtacagagt                                 >  1:19491014‑M2/32‑33 (MQ=255)
   tttaactgtccaactttttggggtcagtacaGCCt                                 <  1:17498861‑M2/4‑1 (MQ=255)
    ttaactgtccaactttttggggtcagtacagagta                                >  1:16682999‑M2/31‑32 (MQ=255)
    ttaactgtccaactttttggggtcagtacaGACtt                                <  1:18240773‑M2/5‑1 (MQ=255)
    ttaactgtccaactttttggggtcagtacaGACtt                                <  1:3426037‑M2/5‑1 (MQ=255)
    ttaactgtccaactttttggggtcagtacaGACtt                                >  1:8542630‑M2/31‑35 (MQ=255)
     taactgtccaactttttggggtcagtacaGACTTg                               <  1:10609841‑M2/6‑1 (MQ=255)
      aactgtccaactttttggggtcagtacaGACTTgg                              <  1:11435746‑M2/7‑1 (MQ=255)
       actgtccaactttttggggtcagtacaGACTTggn                             <  1:16678628‑M2/8‑1 (MQ=255)
       actgtccaactttttggggtcagtacaGACTTggg                             <  1:9132159‑M2/8‑1 (MQ=255)
       actgtccaactttttggggtcagtacaGACTTggg                             >  1:743393‑M2/28‑35 (MQ=255)
       actgtccaactttttggggtcagtacaGACTTggg                             >  1:11350951‑M2/28‑35 (MQ=255)
       actgtccaactttttcgggtcagtacaGACTTggg                             >  1:612560‑M2/28‑35 (MQ=255)
         tgtccaactttttggggtcagtacaGACTTGGGTa                           <  1:11658601‑M2/10‑1 (MQ=255)
         tgtccaactttttggggtcagtacaGACTTGGGTa                           <  1:20302536‑M2/10‑1 (MQ=255)
          gtccaactttttggggtcagtacaGACTTGGGTaa                          >  1:1464204‑M2/25‑35 (MQ=255)
          gtccaactttttggggtcagtacaGACTTGGGTaa                          <  1:20064717‑M2/11‑1 (MQ=255)
           tccaactttttggggtcagtacaGACTTGGGTAAc                         >  1:19386997‑M2/24‑35 (MQ=255)
           tccaactttttggggtcagtacaGACTTGGGTAAc                         >  1:1016137‑M2/24‑35 (MQ=255)
           tccaactttttggggtcagtacaGACTTGGGTAAc                         <  1:3679766‑M2/12‑1 (MQ=255)
           tccaactttttggggtcagtacaGACTTGGGTAAc                         >  1:16213340‑M2/24‑35 (MQ=255)
             caactttttggggtcagtacaGACTTGGGTAACCa                       >  1:15599971‑M2/22‑35 (MQ=255)
              aactttttggggtcagtacaGACTTGGGTAACCAt                      <  1:8610337‑M2/15‑1 (MQ=255)
              aactttttggggtcagtacaGACTTGGGTAACCAt                      <  1:14988109‑M2/15‑1 (MQ=255)
              aactttttggggtcagtacaGACTTGGGTAACCAt                      >  1:2853941‑M2/21‑35 (MQ=255)
              aactttttggggtcagtacaGACTTGGGTAACCAt                      >  1:17581139‑M2/21‑35 (MQ=255)
               actttttggggtcagtacaGACTTGGGTAACCATc                     <  1:15050923‑M2/16‑1 (MQ=255)
               actttttggggtcagtacaGACTTGGGTAACCATc                     <  1:4614475‑M2/16‑1 (MQ=255)
               actttttggggtcagtacaGACTTGGGTAACCATc                     <  1:9025197‑M2/16‑1 (MQ=255)
                ctttttggggtcagtacaGACTTGGGTAACCATCg                    <  1:11501802‑M2/17‑1 (MQ=255)
                ctttttggggtcagtacaGACTTGGGTAACCATCg                    <  1:13174939‑M2/17‑1 (MQ=255)
                ctttttggggtcagtacaGACTTGGGTAACCATCg                    <  1:7598149‑M2/17‑1 (MQ=255)
                 tttttggggtcagtacaGACTTGGGTAACCATCGa                   >  1:14810088‑M2/18‑35 (MQ=255)
                 tttttggggtcagtacaGACTTGGGTAACCATCGa                   >  1:14005820‑M2/18‑35 (MQ=255)
                 tttttggggtcagtacaGACTTGGGTAACCATCGa                   <  1:13473251‑M2/18‑1 (MQ=255)
                  ttttggggtcagtacaGACTTGGGTAACCATCGAt                  <  1:704330‑M2/19‑1 (MQ=255)
                  ttttggggtcagtacaGACTTGGGTAACCATCGAt                  >  1:11876497‑M2/17‑35 (MQ=255)
                  ttttggggtcagtacaGACTTGGGTAACCATCGAt                  <  1:18509776‑M2/19‑1 (MQ=255)
                  tttgggggtcagtacaGACTTGGGTAACCATCGAt                  <  1:11134821‑M2/19‑1 (MQ=255)
                   tttggggtcagtacaGACTTGGGTAACCATCGAtt                 >  1:9456877‑M2/16‑35 (MQ=255)
                    ttggggtcagtacaGACTTGGGTAACCATCGAttt                <  1:14410248‑M2/21‑1 (MQ=255)
                    ttggggtcagtacaGACTTGGGTAACCATCGAttt                <  1:16510729‑M2/21‑1 (MQ=255)
                     tggggtcagtacaGACTTGGGTAACCATCGAtttt               >  1:10055194‑M2/14‑35 (MQ=255)
                     tggggtcagtacaGACTTGGGTAACCATCGAtttt               <  1:19239536‑M2/22‑1 (MQ=255)
                      ggggtcagtacaGACTTGGGTAACCATCGATTTTg              <  1:12142496‑M2/23‑1 (MQ=255)
                      ggggtcagtacaGACTTGGGTAACCATCGATTTTg              <  1:6854847‑M2/23‑1 (MQ=255)
                      ggggtcagtacaGACTTGGGTAACCATCGATTTTg              <  1:14536336‑M2/23‑1 (MQ=255)
                       gggtcagtacaGACTTGGGTAACCATCGATTTTGc             <  1:13885134‑M2/24‑1 (MQ=255)
                       gggtcagtacaGACTTGGGTAACCATCGATTTTGc             <  1:9132018‑M2/24‑1 (MQ=255)
                        ggtcagtacaGACTTGGGTAACCATCGATTTTGCa            >  1:16075524‑M2/11‑35 (MQ=255)
                        ggtcagtacaGACTTGGGTAACCATCGATTTTGCa            >  1:2696436‑M2/11‑35 (MQ=255)
                         gtcagtacaGACTTGGGTAACCATCGATTTTGCaa           >  1:4345834‑M2/10‑35 (MQ=255)
                         gtcagtacaGACTTGGGTAACCATCGATTTTGCaa           <  1:19316722‑M2/26‑1 (MQ=255)
                         gtcagtacaGACTTGGGTAACCATCGATTTTGCaa           >  1:6523920‑M2/10‑35 (MQ=255)
                         gtcagtacaGACTTGGGTAACCATCGATTTTGCaa           >  1:6927628‑M2/10‑35 (MQ=255)
                          tcagtacaGACTTGGGTAACCATCGATTTTGCaat          >  1:12329930‑M2/9‑35 (MQ=255)
                           cagtacaGACTTGTGTAACCATCGATTTTGCaata         >  1:2907459‑M2/8‑35 (MQ=255)
                           cagtacaGACTTGGGTAACCATCGATTTTGCaata         >  1:7945956‑M2/8‑35 (MQ=255)
                            agtacaGACTTGGGTAACCATCGATTTTGCaataa        >  1:7896792‑M2/7‑35 (MQ=255)
                            agtacaGACTTGGGTAACCATCGATTTTGCaataa        >  1:17099102‑M2/7‑35 (MQ=255)
                            agtacaGACTTGGGTAACCATCGATTTTGCaataa        >  1:14591369‑M2/7‑35 (MQ=255)
                            agtacaGACTTGGGTAACCATCGATTTTGCaataa        <  1:2009210‑M2/29‑1 (MQ=255)
                             gtacaGACTTGGGTAACCATAGATTTTGCaataat       <  1:12681162‑M2/30‑1 (MQ=255)
                              tacaGACTTGGGTAACCATTGATTTTGCAATAATg      >  1:14182493‑M2/5‑35 (MQ=255)
                               acaGACTTGGGTAACCATCGATTTTGCAATAATgg     >  1:236424‑M2/4‑35 (MQ=255)
                                caGACTTGGGTAACCATCGATTTTGCAATAATGGa    <  1:16910189‑M2/33‑1 (MQ=255)
                                  gACTTGGGTAACCATCGATTTTGCAATAATGGAAc  <  1:8190224/35‑1 (MQ=255)
                                  gACTTGGGTAACCATCGATTTTGCAATAATGGAAc  <  1:781477/35‑1 (MQ=255)
                                  gACTTGGGTAACCATCGATTTTGCAATAATGGAAc  <  1:7665148/35‑1 (MQ=255)
                                  gACTTGGGTAACCATCGATTTTGCAATAATGGAAc  >  1:19725458/1‑35 (MQ=255)
                                  gACTTGGGTAACCATCGATTTTGCAATAATGGAAc  <  1:17652753/35‑1 (MQ=255)
                                  gACTTGGGTAACCATCGATTTTGCAATAATGGAAc  <  1:10473946/35‑1 (MQ=255)
                                  |                                  
CCACTAATGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAAC  >  REL606/3901423‑3901491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.