New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2288961 =52 (0.510)12 (0.140) 4/40 NT 19.0% coding (1909/3753 nt) yfaL adhesin
?REL606 = 3625456 59 (0.690)pseudogene (7/738 nt) yhjQ b3534; cell division protein (chromosome partitioning ATPase)

Only 100 of 110 total aligned reads displayed.

AGTGCGCCCCACTGCGTGTCTACCCCCGCATCAACTGCCACTTCACCGTCGGCGCGCATTTCAATATCA  >  REL606/2288927‑2288995
                                  |                                  
aGTGCGCCCCACTGCGTGTCTACCCCCGCATCAAc                                    >  1:10247998/1‑35 (MQ=255)
aGTGCGCCCCACTGCGTGTCTACCCCCGCATCAAc                                    >  1:19355335/1‑35 (MQ=255)
aGTGCGCCCCACTGCGTGTCTACCCCCGCATCAAc                                    >  1:18105635/1‑35 (MQ=255)
aGTGCGCCCCACTGCGTGTCTACCCCCGCATCAAc                                    >  1:10861424/1‑35 (MQ=255)
aGTGCCCCCCACTGCGTGTCTACCCCCGCATCAAc                                    <  1:10096507/35‑1 (MQ=255)
 gTGCGCCCCCCTGCGTGTCTACCCCCGCATCAACt                                   <  1:10747097/35‑1 (MQ=255)
 gTGCGCCCCCCTGCGTGTCTACCCCCGCATCAACt                                   <  1:15261635/35‑1 (MQ=255)
 gTGCGCCCCACTGCGTGTCTACCCCCGCATCAACt                                   <  1:14568708/35‑1 (MQ=255)
  tGCGCCCCACTGCGTGTCTACCCCCGCATCAACTg                                  >  1:8979831/1‑35 (MQ=255)
  tGCGCCCCACTGCGTGTCTACCCCCGCATCAACTg                                  >  1:17933106/1‑35 (MQ=255)
   gcgcCCCCCTGCGTGTCTACCCCCGCATAAACTGc                                 <  1:18693404/35‑1 (MQ=255)
   gcgcCCCACTGCGTGTCTACCCCCGCATCAACTGc                                 >  1:5519424/1‑35 (MQ=255)
   gcgcCCCACTGCGTGTCTACCCCCGCATCAACTGc                                 <  1:8340584/35‑1 (MQ=255)
   gcgcCCCACTGCGTGTCTACCCCCGCATCAACTGc                                 >  1:6226609/1‑35 (MQ=255)
   cccccccCCTGCGTGTCTCCCCCAGCATCAACTGc                                 <  1:11307165/32‑1 (MQ=19)
   acgcCCCACTGCGTGTCTACCCCCGCATCAACTGc                                 >  1:11860386/2‑35 (MQ=255)
    cgcCCCACTGCGTGTCTACCCCCGCATCAACTGcc                                >  1:3403018/1‑35 (MQ=255)
    cgcCCCACTGCGTGTCTACCCCCGCATCAACAGcg                                >  1:11485900/1‑34 (MQ=255)
     gcCCCACTGCGTGTCTACCCCCGCATCAACTGCCa                               >  1:12178908/1‑35 (MQ=255)
     gcCCCACTGCGTGTCTACCCCCGCATCAACTGCCa                               >  1:8894730/1‑35 (MQ=255)
     gcCCCACTGCGTGTCTACCCCCGCATCAACTGCCa                               >  1:753082/1‑35 (MQ=255)
      ccccACTGCGTGTCTACCCCCGCATCAACTGCCAc                              >  1:18622709/1‑35 (MQ=255)
      ccccACTGCGTGTCTACCCCCGCATCAACTGCCAc                              >  1:5223743/1‑35 (MQ=255)
       cccACTGCGTGTCTACCCCCGCATCAACTGCCACt                             >  1:11216345/1‑35 (MQ=255)
        ccACTGCGTGTCTACCCCCGCATCAACTGCCACtt                            >  1:19428466/1‑35 (MQ=255)
        ccACTGCGTGTCTACCCCCGCATCAACTGCCACtt                            >  1:16047421/1‑35 (MQ=255)
         cACTGCGTGTCTACCCCCGCATCAACTGCTACTTc                           >  1:429166/1‑35 (MQ=255)
         cACTGCGTGTCTACCCCCGCATCAACTGCCACTTc                           >  1:2171696/1‑35 (MQ=255)
          aCTGCGTGTCTACCCCCGCATCAACTGCCACTTCa                          >  1:2704608/1‑35 (MQ=255)
          aCTGCGTGTCTACCCCCGCATCAACTGCCACTTCa                          >  1:11747780/1‑35 (MQ=255)
            tGCGTGTCTACCCCCGCATCAACTGCCACTTCAcc                        >  1:341049/1‑35 (MQ=255)
            tGCGTGTCTACCCCCGCATCAACTGCCACTTCAcc                        >  1:4936381/1‑35 (MQ=255)
             gCGTGTCTACCCCCGCATCAACTGCCACTTCACCg                       >  1:11513132/1‑35 (MQ=255)
             gCGTGTCTACCCCCGCATCAACTGCCACTTCACCg                       >  1:4166447/1‑35 (MQ=255)
             gCGTGTCTACCCCCGCATCAACTGCCACTTCACCg                       >  1:12335973/1‑35 (MQ=255)
              cGTGTCTCCCCCCGCATCAACTGCAACTTCACCGt                      <  1:12184305/35‑1 (MQ=37)
              cGTGTCTACCCCCGCATCAACTGCCACTTCACCGt                      >  1:14784604/1‑35 (MQ=255)
              cGTGTCTACCCCCGCATCAACTGCCACTTCACCGt                      >  1:5933187/1‑35 (MQ=255)
              cGTGTCTACCCCCGCATCAACTGCCACTTCACCGt                      >  1:19810655/1‑35 (MQ=255)
               gtgtCTACCCCCGCATCAACTGCCACTTCACCGta                     >  1:8533696/1‑34 (MQ=255)
               gtgtCTACCCCCGCATCAACTGCCACTTCACCGTc                     >  1:4166286/1‑35 (MQ=255)
               gtgtCTACCCCCGCATCAACTGCCACTTCACCGTc                     >  1:2724465/1‑35 (MQ=255)
                tgtCTACCCCCGCATCAACTGCCACTTCACCGTCg                    >  1:5152135/1‑35 (MQ=255)
                tgtCTACCCCCGCATCAACTGCCACTTCACCGTCg                    >  1:3772071/1‑35 (MQ=255)
                tgtCTACCCCCGCATCAACTGCCACTTCACCGTCg                    >  1:13078813/1‑35 (MQ=255)
                tgtCTACCCCCGCATCAACTGCCACTTCACCGTCg                    >  1:19399790/1‑35 (MQ=255)
                tgtCTACCCCCGCATCAACTGCCACTTCACCGCCg                    >  1:20334821/1‑35 (MQ=255)
                 gtCTACCCCCGCATCAACTGCCACTTCACCGTCgg                   >  1:12071262/1‑35 (MQ=255)
                 gtCTACCCCCGCATCAACTGCCACTTCACCGTCgg                   >  1:16005886/1‑35 (MQ=255)
                  tCTACCCCCGCATCAACTGCCACTTCACCGTCGgc                  >  1:19197567/1‑35 (MQ=255)
                   cTACCCCCGCATCAACTGCCACTTCACCGTCGgcg                 >  1:11836412/1‑35 (MQ=255)
                   cTACCCCCGCATCAACTGCCACTTCACCGTCGgcg                 >  1:10335636/1‑35 (MQ=255)
                   cTACCCCCGCATCAACTGCCACTTCACCGTCGgcg                 >  1:16499935/1‑35 (MQ=255)
                    tACCCCCGCATCAACTGCCACTTCACCGTCGgcgc                >  1:19111892/1‑35 (MQ=255)
                     aCCCCAGCATCAACTGCCACTTCACCGTCGgcgcg               >  1:1390075/1‑35 (MQ=255)
                      cccccGCATCAACTGCCGCTTCACCGTCGgcgcgc              >  1:2348573/1‑35 (MQ=255)
                       cccccccccccCTGCCACTTCACCGTCGGCGCGCa             >  1:2731959‑M1/12‑35 (MQ=255)
                       ccccGCATCAACTGCCACTTCACCGTCGGCGCCCa             >  1:4151111/1‑35 (MQ=255)
                        ccccccccccCTGCCACTTCACCGTCGGCGCGCAt            >  1:7168522‑M1/11‑35 (MQ=255)
                        ccccccccccCTGCCACTTCACCGTCGGCGCGCAt            >  1:10836935‑M1/11‑35 (MQ=255)
                        ccccccccccCTGCCACTTCACCGTCGGCGCGCAt            >  1:3450120‑M1/11‑35 (MQ=255)
                        ccccccccccCTGCCACTTCACCGTCGGCGCGCAt            >  1:19013933‑M1/11‑35 (MQ=255)
                        cccGCATCAACTGCCACTTCACCGTCGGCGCGCAt            >  1:16498757/1‑35 (MQ=255)
                         ccgccccccCTGCCACTTCACCGTCGGCGCGCAtt           >  1:6275178‑M1/10‑35 (MQ=255)
                         ccGCATCAACTGCCACTTCACCGTCGGCGCGCCtt           >  1:6537332/1‑35 (MQ=255)
                         ccGCATCAACTGCCACTTCACCGTCGGCGCGCAtt           >  1:20105233/1‑35 (MQ=255)
                         ccGCATCAACTGCCACTTCACCGTCGGCGCGCAtt           >  1:13524622/1‑35 (MQ=255)
                          ccccccccCTGCCACTTCACCGTCGGCGCGCAttt          >  1:3463329‑M1/9‑35 (MQ=255)
                          ccccccccCTGCCACTTCACCGTCGGCGCGCAttt          >  1:12921888‑M1/9‑35 (MQ=255)
                           gCATCAACTGCCACTTCACCGTCGGCGCGCATTTc         >  1:6251843/1‑35 (MQ=255)
                           gCATCAACTGCCACTTCACCGTCGGCGCGCATTTc         >  1:1277008/1‑35 (MQ=255)
                           gCATCAACTGCCACTTCACCGTCGGCGCGCATTTc         >  1:1559058/1‑35 (MQ=255)
                           gCATCAACTGCCACTTCACCGTCGGCGCGCATTTc         >  1:17612498/1‑35 (MQ=255)
                           cccccccCTGCCACTTCACCGTCGGCGCGCATTTc         >  1:12664443‑M1/8‑35 (MQ=255)
                            ccccccCTGCCACTTCACCGTCGGCGCGCATTTCa        >  1:10303060‑M1/7‑35 (MQ=255)
                            ccccccCTGCCACTTCACCGTCGGCGCGCATTTCa        >  1:19346849‑M1/7‑35 (MQ=255)
                            cATCAACTGCCACTTCACCGTCGGCGCGCATTTCa        >  1:4779516/1‑35 (MQ=255)
                             cccccCTGCCACTTCACCGTCGGCGCGCATTTCaa       >  1:15449872‑M1/6‑35 (MQ=255)
                             cccccCTGCCACTTCACCGTCGGCGCGCATTTCaa       >  1:13638740‑M1/6‑35 (MQ=255)
                             cccccCTGCCACTTCACCGTCGGCGCGCATTTCaa       >  1:8417468‑M1/6‑35 (MQ=255)
                             cccccCTGCCACTTCACCGTCGGCGCGCATTTCaa       >  1:8634771‑M1/6‑35 (MQ=255)
                             aTCAACTGCCACTTCACCGTCGGCGCGCCTTTCaa       >  1:13171844/1‑35 (MQ=255)
                             aTCAACTGCCACTTCACCGTCGGCGCGCATTTCaa       >  1:10162721/1‑35 (MQ=255)
                             aTCAACTGCCACTTCACCGTCGGCGCGCATTTCaa       >  1:4659952/1‑35 (MQ=255)
                              tCAACTGCCACTTCACCGTCGGCGCGCATTTCAat      >  1:8763689/1‑35 (MQ=255)
                              tCAACTGCCACTTCACCGTCGGCGCGCATTTCAat      >  1:3926526/1‑35 (MQ=255)
                              ccccCTGCCACTTCACCGTCGGCGCGCATTTCAat      >  1:20425662‑M1/5‑35 (MQ=255)
                              ccccCTGCCACTTCACCGTCGGCGCGCATTTCAat      >  1:3709337‑M1/5‑35 (MQ=255)
                              ccccCTGCCACTTCACCGTCGGCGCGCATTTCAat      >  1:18378869‑M1/5‑35 (MQ=255)
                               cccCTGCCACTTCACCGTCGGCGCGCATTTCAata     >  1:10809731‑M1/4‑35 (MQ=255)
                               cccCTGCCACTTCACCGTCGGCGCGCATTTCAata     >  1:6222435‑M1/4‑35 (MQ=255)
                               cAACTGCCACTTCACCGTCGGCGCGCATTTCAata     >  1:15488732/1‑35 (MQ=255)
                                ccCTGCCACTTCACCGTCGGCGCGCATTTCAatat    >  1:15323672‑M1/3‑35 (MQ=255)
                                aaCTGCCACTTCACCGTCGGCGCGCATTTCAatat    >  1:16909619/1‑35 (MQ=255)
                                aaCTGCCACTTCACCGTCGGCGCGCATTTCAatat    >  1:7249661/1‑35 (MQ=255)
                                aaCTGCCACTTCACCGTCGGCGCGCATTTCAatat    >  1:3468823/1‑35 (MQ=255)
                                 cCTGCCACTTCACCGTCGGCGCGCATTTCAATATc   >  1:4516450‑M1/2‑35 (MQ=255)
                                 aCTGCCACTTCACCGTCGGCGCGCATTTCAATATc   >  1:6261401/1‑35 (MQ=255)
                                  CTGCCACTTCACCGTCGGCGCGCATTTCAATATCa  >  1:10679106‑M1/1‑35 (MQ=255)
                                  CTGCAACTTCACCGTCGGCGCGCATTTCAATATCa  >  1:6768052‑M1/1‑35 (MQ=255)
                                  |                                  
AGTGCGCCCCACTGCGTGTCTACCCCCGCATCAACTGCCACTTCACCGTCGGCGCGCATTTCAATATCA  >  REL606/2288927‑2288995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.