Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,990 IS150 (+) +3 bp 100% intergenic (‑32/‑496) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16990 =0 (0.000)81 (0.790) 38/48 NT 100% intergenic (‑32/‑498) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 590471 NA (NA)noncoding (1977/1977 nt) IS150 repeat region
* ? REL606 = 169920 (0.000)58 (0.560) 29/48 NT 100% intergenic (‑34/‑496) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 107 total aligned reads displayed.

TTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/17023‑16990
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACA  <  REL606/590471‑590439
                                                                   
TTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTT                                  >  1:16644898/1‑35
TTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTT                                  <  1:16981471/35‑1
 TAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTTG                                 <  1:9122142/35‑1
 TAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTTG                                 >  1:1536623/1‑35
   GCTGAACGGCAGATAGAGAAAAGCCCCGAGTTGTA                               <  1:11151918/35‑1
   GCTGAACGGCAGATAGAGAAAAGCCCCGAGTTGTA                               <  1:19668581/35‑1
     gGAACGGCAGATAGAGAAAAGCCCCGAGTTGTACT                             <  1:19137257/34‑1
     TGAACGGCAGATAGAGAAAAGCCCCGAGTTGTACT                             <  1:19304301/35‑1
     TGAACGGCAGATAGAGAAAAGCCCCGAGTTGTACT                             >  1:12968855/1‑35
     TGAACGGCAGATAGAGAAAAGCCCCGAGTTGTACT                             <  1:15780948/35‑1
     TGAACGGCAGATAGAGAAAAGCCCCGAGTTGTACT                             >  1:14106864/1‑35
      GAACGGCAGATAGAGAAAAGCCCCGAGTTGTACTG                            >  1:3448358/1‑35
      GAACGGCAGATAGAGAAAAGCCCCGAGTTGTACTG                            >  1:5260650/1‑35
      GAACGGCAGATAGAGAAAAGCCCCGAGTTGTACTG                            <  1:13725858/35‑1
      GAACGGCAGATAGAGAAAAGCCCCGAGTTGTACTG                            >  1:10164638/1‑35
       agCGGCAGATAGAGAAAAGCCCCGAGTTGTACTGA                           <  1:9648921/33‑1
       AACGGCAGATAGAGAAAAGCCCCGAGTTGTACTGA                           <  1:15851334/35‑1
        cCGGCAGATAGAGAAAAGCCCCGAGTTGTACTGAC                          <  1:2786296/34‑1
        ACGGCAGATAGAGAAAAGCCCAGAGTTGTACTGAC                          <  1:1280460/35‑1
         CGGCAGATAGAGAAAAGCCCCGAGTTGTACTGACC                         <  1:17127603/35‑1
         CGGCAGATAGAGAAAAGCCCCGAGTTGTACTGACC                         >  1:13199820/1‑35
           GCAGATAGAGAAAAGCCCCGAGTTGTACTGACCCC                       >  1:6825455/1‑35
            CAGATAGAGAAAAGCCCCGAGTTGTACTGACCCCA                      <  1:19711171/35‑1
            CAGATAGAGAAAAGCCCCGAGTTGTACTGACCCCA                      >  1:2360928/1‑35
            CAGATAGAGAAAAGCCCCGAGTTGTACTGACCCCA                      <  1:1739613/35‑1
            CAGATAGAGAAAAGCCCCGAGTTGTACTGACCCCA                      >  1:18508548/1‑35
            CAGATAGAGAAAAGCCCCGAGTTGTACTGACCCCA                      >  1:11507293/1‑35
             AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA                     >  1:8425105/1‑35
             AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA                     >  1:6380233/1‑35
             AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA                     >  1:12181362/1‑35
             AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA                     >  1:6185761/1‑35
             AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA                     <  1:1677598/35‑1
             AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA                     >  1:12127682/1‑35
             AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA                     >  1:18705317/1‑35
             AGATAGAGAAAAGCCCCGAGTTGTACTGACCCAAA                     <  1:10753225/35‑1
              GATAGAGAAAAGCCCCGAGTTGTACTGACCCCAAA                    >  1:2802206/1‑35
              GATAGAGAAAAGCCCCGAGTTGTACTGACCCCAAA                    <  1:16140927/35‑1
              GATAGAGAAAAGCCCCGAGTTGTACTGACCCCAAA                    >  1:5909647/1‑35
               ATAGAGAAAAGCCCCGAGTTGTACTGACCCCAAAA                   >  1:14785681/1‑35
               ATAGAGAAAAGCCCCGAGTTGTACTGACCCCAAAA                   <  1:11581269/35‑1
                TAGAGAAAAGCCCCGAGTTGTACTGACCCCAAAAA                  >  1:8413549/1‑35
                TAGAGAAAAGCCCCGAGTTGTACTGACCCCAAAAA                  >  1:10540238/1‑35
                 AGAGAAAAGCCCCGAGTTGTACTGACCCCAAAAAG                 <  1:14304705/35‑1
                 AGAGAAAAGCCCCGAGTTGTACTGACCCCAAAAAG                 >  1:19131480/1‑35
                  GAGAAAAGCCCCGAGTTGTACTGACCCCAAAAAGT                >  1:17227164/1‑35
                   aaAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTT               <  1:17802022/33‑1
                   AGAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTT               >  1:19955870/1‑35
                   AGAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTT               >  1:4764112/1‑35
                   AGAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTT               >  1:13799072/1‑35
                    GAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTG              >  1:19394123/1‑35
                    GAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTG              <  1:11256195/35‑1
                    GAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTG              >  1:17359638/1‑35
                    GAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTG              >  1:4847296/1‑35
                     AAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGG             <  1:339824/35‑1
                     AAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGG             <  1:5935759/35‑1
                     AAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGG             <  1:7380613/35‑1
                     AAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGG             >  1:2883616/1‑35
                     AAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGG             >  1:13874678/1‑35
                      AAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGA            <  1:4087498/35‑1
                      AAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGA            <  1:20215807/35‑1
                      AAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGA            >  1:2587083/1‑35
                      AAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGA            >  1:8569858/1‑35
                       AAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGAC           >  1:9649708/1‑35
                       AAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGAC           >  1:3354373/1‑35
                       AAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGAC           >  1:2972537/1‑35
                       AAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGAC           >  1:14460477/1‑35
                       AAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGAC           >  1:15839655/1‑35
                       AAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGAC           >  1:17250590/1‑35
                        AGCCCCGAGTTGTACTGACCCCAAAAAGTTGGACA          >  1:271521/1‑35
                        AGCCCCGAGTTGTACTGACCCCAAAAAGTTGGACA          <  1:16010254/35‑1
                        AGCCCCGAGTTGTACTGACCCCAAAAAGTTGGACA          <  1:18080528/35‑1
                        AGCCCCGAGTTGTACTGACCCCAAAAAGTTGGACA          <  1:1716522/35‑1
                         GCCCCGAGTTGTACTGACCCCAAAAAGTTGGACAG         <  1:10889814/35‑1
                         GCCCCGAGTTGTACTGACCCCAAAAAGTTGGACAG         >  1:9542034/1‑35
                         GCCCCGAGTTGTACTGACCCCAAAAAGTTGGACAG         <  1:16740188/35‑1
                         GCCCCGAGTTGTACTGACCCCAAAAAGTTGGACAG         <  1:16976552/35‑1
                         GCCCCGAGTTGTACTGACCCCAAAAAGTTGGACAG         >  1:5256587/1‑35
                          CCCCGAGTTGTACTGACCCCAAAAAGTTGGACAGT        <  1:8328984/35‑1
                            CCGAGTTGTACTGACCCCAAAAAGTTGGACAGTTA      >  1:2593181/1‑35
                            CCGAGTTGTACTGACCCCAAAAAGTTGGACAGTTA      >  1:8864062/1‑35
                            CCGAGTTGTACTGACCCCAAAAAGTTGGACAGTTA      <  1:5539140/35‑1
                            CCGAGTTGTACTGACCCCAAAAAGTTGGACAGTTA      >  1:19192595/1‑35
                             CGAGTTGTACTGACCCCAAAAAGTTGGACAGTTAA     >  1:17821865/1‑35
                              GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA    <  1:11647322/35‑1
                              GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA    >  1:9527921/1‑35
                              GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA    <  1:4307335/35‑1
                              GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA    >  1:3094557/1‑35
                              GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA    >  1:6920623/1‑35
                              GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA    >  1:6612182/1‑35
                              GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA    <  1:17125584/35‑1
                              GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA    >  1:3798717/1‑35
                               AGTTGTACTGACCCCAAAAAGTTTGACAGTTAAAC   >  1:15646708/1‑35
                               AGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC   <  1:14056798/35‑1
                               AGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC   >  1:19284257/1‑35
                                GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA  >  1:2065093/1‑35
                                GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA  >  1:589515/1‑35
                                GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA  <  1:1526632/35‑1
                                GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA  <  1:15889587/35‑1
                                GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA  >  1:2551389/1‑35
                                GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA  <  1:9648855/35‑1
                                                                   
TTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/17023‑16990
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACA  <  REL606/590471‑590439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.