New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1857572 =NA (NA)13 (0.200) 4/30 NT 17.7% noncoding (509/1343 nt) IS186 repeat region
?REL606 = 2118058 97 (0.940)coding (720/2292 nt) ECB_02004 Replication gene A protein

Only 100 of 358 total aligned reads displayed.

AAGGAGAACGGTCTTTATTGACCTCCCCGACAGCAATCAGTAACGCCTCATGCCAGCGCATACGCTGGC  >  REL606/2118024‑2118092
                                  |                                  
  ggAGAACGGTCTTTATTGCCCTCCCCGACAGCAAt                                  <  1:14992720/35‑1 (MQ=255)
    agaACGGTCTTTATTGACCTCCCCGACAGCAATCa                                >  1:12907843/1‑35 (MQ=255)
    agaACGGTCTTTATTGACCTCCCCGACAGCAATCa                                >  1:20401929/1‑35 (MQ=255)
     gaACGGTCTTTATTGCCCTCCCCGACAGCAATCAg                               <  1:15490614/35‑1 (MQ=255)
     gaACGGTCTTTATTGACCTCCCCGACAGCAATCAg                               <  1:11215409/35‑1 (MQ=255)
      aaCGTTCTTTATTGACCTCCCCGACAGCAATCAGt                              >  1:1680228/1‑35 (MQ=255)
      aaCGGTCTTTATTGCCCTCCCCGACAGCAATCAGt                              <  1:3590142/35‑1 (MQ=255)
      aaCGGTCTTTATTGACCTCCCCGACAGCAATCAGt                              >  1:20557566/1‑35 (MQ=255)
        cGGTCTTTATTGCCCTCCCCGACAGCAATCAGTaa                            <  1:1255788/35‑1 (MQ=255)
        cGGTCTTTATTGACCTCCCCGATAGCAATCAGTaa                            >  1:1076177/1‑35 (MQ=255)
         ggTCTTTATTGACCTCCCCGACAGCAATCAGTAAc                           >  1:2238897/1‑35 (MQ=255)
           tCTTTATTGACCTCCCCGACAGCAATCAGTAACGc                         >  1:4925541/1‑35 (MQ=255)
             tttATTGACCTCCCCGACAGCAATCAGTAACGCCt                       >  1:8823050/1‑35 (MQ=255)
             tttATTGACCTCCCCGACAGCAATCAGTAACGCCt                       <  1:9022110/35‑1 (MQ=255)
               tATTGCCCTCCCCGACAGCAATCAGTAACGCCTCa                     <  1:1052791/35‑1 (MQ=255)
                tttgACCTACCCGACAGCAgagacgctgaacggct                    >  1:18985418‑M2/2‑19 (MQ=255)
                 ttGAGCTCCCCGACAGCAgagacgctgaacggctg                   >  1:4012855‑M2/1‑18 (MQ=255)
                 ttGACCTCCCCGACAGCAgagacgctgaacggctg                   >  1:8016734‑M2/1‑18 (MQ=255)
                 ttGACCTCCCCGACAGCAATCAGTAACGCCTCATg                   >  1:12714337/1‑35 (MQ=255)
                 ttGACCTCCCCGACAGCAATCAGTAACGCCTCATg                   >  1:8727006/1‑35 (MQ=255)
                  tgcccTCCCCGACAGCAATCAGTAACGCCTCATGc                  <  1:1724920/32‑1 (MQ=255)
                  tccccTCCCCGACAGCAATCAGTAACGCCTCATGc                  <  1:8291445/32‑1 (MQ=255)
                  taaccTCCCCGACAGCAgagacgctgaacggctgg                  >  1:10145678‑M2/3‑17 (MQ=255)
                  tGACCTCCCCGACAGCAATCAGTAACGCCTCATGc                  <  1:19434218/35‑1 (MQ=255)
                   gcccTCCCCGACAGCAATCAGTAACGCCTCATGcc                 <  1:6212399/33‑1 (MQ=255)
                   gACCTCCCCGACAGCAATCAGTAACGCCTCATGcc                 >  1:6816601/1‑35 (MQ=255)
                    cccaCCCCGACAGCAgagacgctgaacggctggac                >  1:15910967‑M2/2‑15 (MQ=255)
                    cccTCCCCGACAGCAATCAGTAACGCCTCATGCCa                <  1:562122/34‑1 (MQ=255)
                    aCCACCCCGACAGCAgagacgctgaacggctggac                >  1:5493950‑M2/1‑15 (MQ=255)
                     gcaccccgacAGCAgagacgctgaacggctggacc               >  1:14250453‑M2/4‑14 (MQ=255)
                     cccccccGACAGCAATCAGTAACGCCTCATGCCAg               <  1:13104166/32‑1 (MQ=255)
                     ccCCCCCGACAGCAgagacgctgaacggctggacc               >  1:712887‑M2/1‑14 (MQ=255)
                     accccccgacAGCAgagacgctgaacggctggacc               >  1:16345166‑M2/4‑14 (MQ=255)
                      ccccccgaCAGCAgagacgctgaacggctggaccg              >  1:11612888‑M2/3‑13 (MQ=255)
                      ccccccgaCAGCAgagacgctgaacggctggaccg              >  1:13694568‑M2/3‑13 (MQ=255)
                      ccccccgaCAGCAgagacgctgaacggctggaccg              >  1:13489342‑M2/3‑13 (MQ=255)
                      caccccgaCAGCAgagacgctgaacggctggaccg              >  1:16482523‑M2/3‑13 (MQ=255)
                      cTCCCGGACAGCAATCAGTAACGCCTCATGCCAgc              <  1:16912689/35‑1 (MQ=255)
                      cTCCCCGACAGCAATCAGTAACGCCTCATGCCAgc              <  1:11783490/35‑1 (MQ=255)
                      cTCCCCGACAGCAATCAGTAACGCCTCATGCCAgc              >  1:11909064/1‑35 (MQ=255)
                      cTCCCCGACAGCAATCAGTAACGCCTCATGCCAgc              <  1:5175479/35‑1 (MQ=255)
                      acccccGACAGCAATCAGTAACGCCTCATGCCAgc              <  1:14521046/33‑1 (MQ=255)
                       tCCCCGACAGCAATCAGTAACGCCTCATGCCAgcg             >  1:17030131/1‑35 (MQ=255)
                       cccccgCCAGCAgagacgctgaacggctggaccga             >  1:9276979‑M2/2‑12 (MQ=255)
                       cccccgACAGCAgagacgctgaacggctggaccga             >  1:15817036‑M2/2‑12 (MQ=255)
                       cccccgACAGCAgagacgctgaacggctggaccga             >  1:13903530‑M2/2‑12 (MQ=255)
                       cacccgaCAGCAgagacgctgaacggctggaccga             >  1:17949608‑M2/3‑12 (MQ=255)
                        ccccGCCAGCAgagacgctgaacggctggaccgat            >  1:2727619‑M2/1‑11 (MQ=255)
                        ccccGACAGCAgagacgctgaacggctggaccgat            >  1:19102211‑M2/1‑11 (MQ=255)
                        ccccGACAGCAgagacgctgaacggctggaccgat            >  1:18501668‑M2/1‑11 (MQ=255)
                        ccccGACAGCAgagacgctgaacggctggaccgat            >  1:15164072‑M2/1‑11 (MQ=255)
                        ccccGACAGCAgagacgctgaacggctggaccgat            >  1:12383919‑M2/1‑11 (MQ=255)
                         ccgGACAGCAgagacgctgaacggctggaccgatt           >  1:15221371‑M2/1‑10 (MQ=255)
                         cccGCCAGCAgagacgctgaacggctggaccgatt           >  1:10311398‑M2/1‑10 (MQ=255)
                         cccGACAGCAgagacgctgaacggctggaccgatt           >  1:7341089‑M2/1‑10 (MQ=255)
                          ccGACAGCAgagacgctgaacggctggaccgattt          >  1:4621594‑M2/1‑9 (MQ=255)
                          ccGACAGCAgagacgctgaacggctggaccgattt          >  1:3683183‑M2/1‑9 (MQ=255)
                          ccGACAGCAgagacgctgaacggctggaccgattt          >  1:14337899‑M2/1‑9 (MQ=255)
                          ccGACAGCAgagacgctgaacggctggaccgattt          >  1:13045565‑M2/1‑9 (MQ=255)
                          ccGACAGCAATCAGTAACGCCTCATGCCAGCGCAt          >  1:18165555/1‑35 (MQ=255)
                           cGACAGCAgagacgctgaacggctggaccgatttg         >  1:7207541‑M2/1‑8 (MQ=255)
                           cGACAGCAgagacgctgaacggctggaccgatttg         >  1:3488259‑M2/1‑8 (MQ=255)
                           cGACAGCAgagacgctgaacggctggaccgatttg         >  1:17205260‑M2/1‑8 (MQ=255)
                           cGACAGCAgagacgctgaacggctggaccgatttg         >  1:955437‑M2/1‑8 (MQ=255)
                           cGACAGCAATCAGTAACGCCTCATGCCAGCTCATa         >  1:20292996/1‑35 (MQ=255)
                           cGACAGCAATCAGTAACGCCTCATGCCAGCGCATa         <  1:13013347/35‑1 (MQ=255)
                           cGACAGCAATCAGTAACGCCTCATGCCAGCGCATa         <  1:12608594/35‑1 (MQ=255)
                            gACAGCAgagacgctgaacggctggaccggtttgc        <  1:2462860‑M2/35‑29 (MQ=255)
                            gACAGCAgagacgctgaacggctggaccgatttgc        >  1:17119352‑M2/1‑7 (MQ=255)
                            gACAGCAgagacgctgaacggctggaccgatttgc        >  1:2290636‑M2/1‑7 (MQ=255)
                            gACAGCAgagacgctgaacggctggaccgatttgc        >  1:14181347‑M2/1‑7 (MQ=255)
                            gACAGCAgagacgctgaacggctggaccgatttgc        >  1:3887285‑M2/1‑7 (MQ=255)
                            gACAGCAATCAGTAACGCCTCATGCCAGCGCATAc        >  1:9889233/1‑35 (MQ=255)
                            gACAGCAATCAGTAACGCCTCATGCCAGCGCATAc        <  1:16086010/35‑1 (MQ=255)
                             aCAGCAgagacgctgaacggctggaccgatttgcg       >  1:15073675‑M2/1‑6 (MQ=255)
                             aCAGCAgagacgctgaacggctggaccgatttgcg       >  1:10689451‑M2/1‑6 (MQ=255)
                             aCAGCAgagacgctgaacggctggaccgatttgcg       >  1:8166344‑M2/1‑6 (MQ=255)
                             aCAGCAgagacgctgaacggctggaccgatttgcg       >  1:19682165‑M2/1‑6 (MQ=255)
                             aCAGCAgagacgctgaacggctggaccgatttgcg       >  1:15843956‑M2/1‑6 (MQ=255)
                              cagcagagacgctgaacggctggaccgatttgcgc      >  1:10259080‑M2/1‑5 (MQ=255)
                              cagcagagacgctgaacggctggaccgatttgcac      >  1:9616450‑M2/1‑5 (MQ=255)
                              cAGCAATCAGTAACGCCTCATGCCAGCGCATACGc      >  1:3228562/1‑35 (MQ=255)
                              cAGCAATCAGTAACGCCTCATGCCAGCGCATACGc      >  1:20066097/1‑35 (MQ=255)
                               agcagagacgctgaactgctggaccgatttgcgca     <  1:13292546‑M2/35‑32 (MQ=255)
                               agcagagacgctgaacggctggaccgatttgcgca     >  1:8658797‑M2/1‑4 (MQ=255)
                               agcagagacgctgaacggctggaccgatttgcgca     >  1:7519105‑M2/1‑4 (MQ=255)
                               agcagagacgctgaacggctggaccgatttgcgca     <  1:14759626‑M2/35‑32 (MQ=255)
                               agcagagacgctgaacggctggaccgatttgcgca     >  1:4493865‑M2/1‑4 (MQ=255)
                               aGCAATCAGTAACGCCTCATGCCAGCGCATACGCt     >  1:3297363/1‑35 (MQ=255)
                                gcagagacgctgaacggctggaccgatttgcgcaa    >  1:7739277‑M2/1‑3 (MQ=255)
                                gcagagacgctgaacggctggaccgatttgcgcaa    >  1:6313939‑M2/1‑3 (MQ=255)
                                 cAATCAGTAACGCCTCATGCCAGCGCATACGCTgg   >  1:5791702/1‑35 (MQ=255)
                                 cAATCAGTAACGCCTCATGCCAGCGCATACGCTgg   <  1:8409329/35‑1 (MQ=255)
                                 cAATCAGTAACGCCTCATGCCAGCGCATACGCTgg   <  1:17376410/35‑1 (MQ=255)
                                  agagacgctgaacggctggaccgatttgcgcaaac  >  1:15652961‑M2/1‑1 (MQ=255)
                                  agagacgctgaacggctggaccgatttgcgcaaac  >  1:19316241‑M2/1‑1 (MQ=255)
                                  agagacgctgaacggctggaccgatttgcgcaaac  >  1:17802898‑M2/1‑1 (MQ=255)
                                  aaTCAGTAACGCCTCATGCCAGCGCATACGCTGGc  <  1:11062311/35‑1 (MQ=255)
                                  aaTCAGTAACGCCTCATGCCAGCGCATACGCTGGc  <  1:4077603/35‑1 (MQ=255)
                                  aaTCAGTAACGCCTCATGCCAGCGCATACGCTGGc  >  1:18726389/1‑35 (MQ=255)
                                  |                                  
AAGGAGAACGGTCTTTATTGACCTCCCCGACAGCAATCAGTAACGCCTCATGCCAGCGCATACGCTGGC  >  REL606/2118024‑2118092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.