New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 149942988 (0.860)12 (0.150) 6/38 NT 14.1% coding (1346/2127 nt) ECB_01413 conserved hypothetical protein
?REL606 1692278 = 76 (0.930)coding (806/864 nt) pdxY pyridoxine kinase

Only 100 of 158 total aligned reads displayed.

ATGTTCTGGTTTGGCAATACGATCCTGAGCAGCCACCACTTGCAGCTCATATTCCTGCATTGCTTTGGT  >  REL606/1692244‑1692312
                                  |                                  
aTGTTCTGGTTTGGCAATACGATCCTGAGCAGcca                                    >  1:10162196/1‑35 (MQ=255)
aTGTTCTGGTTTGGCAATACGATCCTGAGCAGcca                                    <  1:17941183/35‑1 (MQ=255)
aTGTTCTGGTTTGGCAATACGATCCTGAGCAGcca                                    <  1:15741986/35‑1 (MQ=255)
aTGTTCTGGTTTGGCAATACGATCCTGAGCAGcca                                    >  1:8952244/1‑35 (MQ=255)
   ttCTGGTTTGGCAATACGATCCTGAGCAGccacca                                 >  1:18794947/1‑35 (MQ=255)
   ttCTGGTTTGGCAATACGATCCTGAGCAGccacca                                 >  1:6105916/1‑35 (MQ=255)
   ttCTGGTTTGGCAATACGATCCTGAGCAGccacca                                 >  1:9054413/1‑35 (MQ=255)
    tCTGGTTTGGCAATACGATCCTGAGCAGCcaccac                                >  1:15082083/1‑35 (MQ=255)
    tCTGGTTTGGCAATACGATCCTGAGCAGCcaccac                                >  1:4362107/1‑35 (MQ=255)
     cTGGTTTGGCAATACGATCCTGAGCAGCCACCACt                               >  1:17092948/1‑35 (MQ=255)
      tGGTTTGGCAATACGATCCTGAGCAGCCACCACtt                              >  1:14535917/1‑35 (MQ=255)
      tGGTTTGGCAATACGATCCTGAGCAGCCACCACtt                              >  1:5615141/1‑35 (MQ=255)
      tGGTTTGGCAATACGATCCTGAGCAGCCACCACtt                              >  1:11889543/1‑35 (MQ=255)
      tGGTTTGGCAATACGATCCTGAGCAGCCACCACtt                              >  1:17315112/1‑35 (MQ=255)
       ggTTTGGCAATACGATCCTGAGCAGCCACCACTTg                             >  1:912078/1‑35 (MQ=255)
       ggTTTGGCAATACGATCCTGAGCAGCCACCACTTg                             >  1:16560420/1‑35 (MQ=255)
       ggTTTGGCAATACGATCCTGAGCAGCCACCACTTg                             >  1:18374367/1‑35 (MQ=255)
        gTTTGGCAATACGATCCTGAGCAGCCACCACTTGc                            >  1:6370809/1‑35 (MQ=255)
        gTTTGGCAATACGATCCTGAGCAGCCACCACTTGc                            >  1:10327994/1‑35 (MQ=255)
         tttGGCAATACGATCCTGAGCAGCCACCACTTGCa                           >  1:17893959/1‑35 (MQ=255)
         tttGGCAATACGATCCTGAGCAGCCACCACTTGCa                           >  1:5910092/1‑35 (MQ=255)
         tttGGCAATACGATCCTGAGCAGCCACCACTTGCa                           >  1:260529/1‑35 (MQ=255)
          ttGGCAATACGATCCTGAGCAGCCACCACTTGCAg                          >  1:16340403/1‑35 (MQ=255)
          ttGGCAATACGATCCTGAGCAGCCACCACTTGCAg                          >  1:9741389/1‑35 (MQ=255)
          ttGGCAATACGATCCTGAGCAGCCACCACTTGCAg                          >  1:8943832/1‑35 (MQ=255)
           tGGCAATACGATCCTGAGCAGCCACCACTTGCAGc                         >  1:13906096/1‑35 (MQ=255)
            ggCAATACGATCCTGAGCAGCCACCACTTGCAGCt                        >  1:19148572/1‑35 (MQ=255)
            ggCAATACGATCCTGAGCAGCCACCACTTGCAGCt                        >  1:993449/1‑35 (MQ=255)
            ggCAATACGATCCTGAGCAGCAACCACTTGCAGCt                        <  1:8290837/35‑1 (MQ=255)
             gCAATACGATCCTGAGCAGCCACCACTTGCAGCTc                       >  1:13156307/1‑35 (MQ=255)
             gCAATACGATCCTGAGCAGCCACCACTTGCAGCTc                       >  1:9775887/1‑35 (MQ=255)
             gCAATACGATCCTGAGCAGCCACCACTTGCAGCTc                       >  1:10875748/1‑35 (MQ=255)
             gCAATACGATCCTGAGCAGCCACCACTTGCAGCTc                       >  1:296881/1‑35 (MQ=255)
              cAATACGATCCTGAGCAGCCACCACTTGCAGCTCa                      >  1:9560015/1‑35 (MQ=255)
               aaTACGATCCTGAGCAGCCACCACTTGCAGCTCat                     >  1:2006442/1‑35 (MQ=255)
               aaTACGATCCTGAGCAGCCACCACTTGCAGCTCat                     >  1:4140370/1‑35 (MQ=255)
               aaTACGATCCTGAGCAGCCACCACTTGCAGCTCat                     >  1:9232748/1‑35 (MQ=255)
                aTACGATCCTGAGCAGCCACCACTTGCAGCTCata                    >  1:6443759/1‑35 (MQ=255)
                aTACGATCCTGAGCAGCCACCACTTGCAGCTCata                    >  1:7266049/1‑35 (MQ=255)
                 tACGATCCTGAGCAGCCACCACTTGCAGCTCatat                   >  1:12486649/1‑35 (MQ=255)
                 tACGATCCTGAGCAGCCACCACTTGCAGCTCatat                   >  1:5884171/1‑35 (MQ=255)
                 tACGATCCTGAGCAGCCACCACTTGCAGCTCatat                   >  1:14809309/1‑35 (MQ=255)
                 tACGATCCTGAGCAGCCACCACTTGCAGCTCatat                   >  1:19062866/1‑35 (MQ=255)
                  gcgacccggaccagccACCACTTGCAGCTCATAtt                  <  1:276754‑M2/19‑1 (MQ=255)
                  aCGATCCTGAGCAGCCACCACTTTCAGCTCATAtt                  >  1:12684025/1‑35 (MQ=255)
                  aCGATCCTGAGCAGCCACCACTTGCAGCTCATAtt                  >  1:16316757/1‑35 (MQ=255)
                   ctaTCCTGACCAGCCACCACTTGCAGCTCATGTTc                 <  1:15019827/33‑1 (MQ=25)
                   cgccccggaccagccACCACTTGCAGCTCATATTc                 <  1:13427519‑M2/20‑1 (MQ=255)
                   cgaccctgaccagccACCACTTGCAGCTCATATTc                 <  1:8643418‑M2/20‑1 (MQ=255)
                   cgacccggaccagccACCACTTGCAGCTCATATTc                 <  1:10084924‑M2/20‑1 (MQ=255)
                   cGATCCTGAGCAGCCACCACTTGCAGCTCATATTc                 >  1:11964003/1‑35 (MQ=255)
                   cGATCCTGAGCAGCCACCACTTGCAGCTCATATTc                 >  1:1810083/1‑35 (MQ=255)
                   cGATCCTGAGCAGCCACCACTTGCAGCTCATATTc                 >  1:17664306/1‑35 (MQ=255)
                    gatccggaccagccACCACTTGCAGCTCATATTcc                <  1:11736599‑M2/21‑1 (MQ=255)
                    gATCCTGAGCAGCCACCCCTTGCAGCTCATATTcc                >  1:17862657/1‑35 (MQ=255)
                    gATCCTGAGCAGCCACCACTTGCAGCTCATATTcc                >  1:905331/1‑35 (MQ=255)
                    gATCCTGAGCAGCCACCACTTGCAGCTCATATTcc                >  1:13690567/1‑35 (MQ=255)
                     accctgaccagccACCACTTGCAGCTCATATTCCt               <  1:11464230‑M2/22‑1 (MQ=255)
                     aTCCTGAGCAGCCACCACTTGCAGCTCATATTCCt               >  1:7290884/1‑35 (MQ=255)
                     aTCCTGACCAGCCACCACTTGCAGCTCATATTCCt               <  1:3555855/35‑1 (MQ=255)
                      tCCTGAGCAGCCACCACTTGCAGCTCATATTCCTg              >  1:7519403/1‑35 (MQ=255)
                      tCCTGAGCAGCCACCACTTGCAGCTCATATTCCTg              >  1:4656239/1‑35 (MQ=255)
                      tCCTGAGCAGCCACCACTTGCAGCTCATATTCCTg              >  1:14891167/1‑35 (MQ=255)
                      cccggcccagccACCACTTGCAGCTCATATTCCTg              <  1:18738431‑M2/23‑1 (MQ=255)
                       ccggaccagccACCACTTGCAGCTCATATTACTGc             <  1:1376535‑M2/24‑1 (MQ=255)
                        cgggccagccACCACTTGCAGCTCATATTCCTGCa            <  1:6739339‑M2/25‑1 (MQ=255)
                        cggcccagccACCACTTGCAGCTCATATTCCTGCa            <  1:15982189‑M2/25‑1 (MQ=255)
                        cggaccagccACCACTTGCAGCTCATATTCCTGCa            <  1:15072871‑M2/25‑1 (MQ=255)
                        ccgAGCAGCCACCACTTGCAGCTCATATTCCTGCa            <  1:19996521/33‑1 (MQ=255)
                        cTGAGCAGCCACCACTTGCAGCTCATATTCCTGCa            <  1:18768872/35‑1 (MQ=255)
                         tgaccagccACCACTTGCAGCTCATATTCCTGCAt           <  1:11901462‑M2/26‑1 (MQ=255)
                         tGAGCAGCCACCACTTGCAGCTCATATTCCTGCAt           >  1:3890789/1‑35 (MQ=255)
                         gggccagccACCACTTGCAGCTCATATTCCTGCAt           <  1:9574507‑M2/26‑1 (MQ=255)
                         ggaccagccACCACTTGCAGCTCATATTCCTGCAt           <  1:16324782‑M2/26‑1 (MQ=255)
                          gAGCAGCCACCACTTGCAGCTCATATTCCTGCAtt          >  1:1595551/1‑35 (MQ=255)
                          cgccagccACCACTTGCAGCTCATATTCCTGCAtt          <  1:6847400‑M2/27‑1 (MQ=255)
                          aaccagccACCACTTGCAGCTCATATTCCTGCAtt          <  1:16675901‑M2/27‑1 (MQ=255)
                           gccagccACCACTTGCAGCTCATATTCCTGCATTn         <  1:179258‑M2/28‑1 (MQ=255)
                           cccagccACAACTTGCAGCTCATATTCCTGCATTg         <  1:6895095‑M2/28‑1 (MQ=255)
                           cccagccACAACTTGCAGCTCATATTCCTGCATTg         <  1:777253‑M2/28‑1 (MQ=255)
                           accagccACCACTTGCAGATCATATTCCTGCATTg         <  1:517149‑M2/28‑1 (MQ=255)
                            gcagcCACCACTTGCAGCTCATATTCCTGCATTGc        >  1:6653116/1‑35 (MQ=255)
                            gcagcCACCACTTGCAGCTCATATTCCTGCATTGc        >  1:12973578/1‑35 (MQ=255)
                            gcagcAACCACTTGCAGCTCATATTCCTGCATTGc        <  1:16973741/35‑1 (MQ=255)
                            ccagccACCACTTGCAGCTCATATTCCTGCATTGc        <  1:5017184‑M2/29‑1 (MQ=255)
                             cagccACCACTTGCAGCTCATATTCCTGCATTGCt       >  1:17405769‑M2/6‑35 (MQ=255)
                              agccACCACTTGCAGCTCATATTCCTGCATTGCtt      >  1:12598625‑M2/5‑35 (MQ=255)
                              agccACCACTTGCAGCTCATATTCCTGCATTGCtt      >  1:15634409‑M2/5‑35 (MQ=255)
                              agccACCACTTGCAGCTCATATTCCTGCATTGCtt      >  1:3320896‑M2/5‑35 (MQ=255)
                               gccACCACTTGCAGCTCATATTCCTGCATTGCttt     >  1:2600830‑M2/4‑35 (MQ=255)
                               gccACCACTTGCAGCTCATATTCCTGCATTGCttt     >  1:10687993‑M2/4‑35 (MQ=255)
                               gccACCACTTGCAGCTCATATTCCTGCATTGCttt     <  1:10106947‑M2/32‑1 (MQ=255)
                                ccACCACTTGCAGCTCATATTCCTGCATTGCTTTg    <  1:1119625‑M2/33‑1 (MQ=255)
                                ccACCACTTGCAGCTCATATTCCTGCATTGCTTTg    >  1:181136‑M2/3‑35 (MQ=255)
                                ccACAACTTGCAGCTCATATTCCTGCATTGCTTTg    <  1:18608239‑M2/33‑1 (MQ=255)
                                caaccacTTGCAGCTCATATTCCTGCATTGCTTtn    <  1:16807179/33‑1 (MQ=255)
                                  accacTTGCAGCTCATATTCCTGCATTGCTTtggt  <  1:12662929/35‑1 (MQ=255)
                                  accacTTGCAGCTCATATTCCTGCATTGCTTtggt  <  1:3482301/35‑1 (MQ=255)
                                  accacTTGCAGCTCATATTCCTGCATTGCTTtggt  >  1:19477099/1‑35 (MQ=255)
                                  accacTTGCAGCTCATATTCCTGCATTGCTTtggt  >  1:9385898/1‑35 (MQ=255)
                                  |                                  
ATGTTCTGGTTTGGCAATACGATCCTGAGCAGCCACCACTTGCAGCTCATATTCCTGCATTGCTTTGGT  >  REL606/1692244‑1692312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.