New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 327441 =112 (1.090)14 (0.140) 5/48 NT 14.4% intergenic (+199/‑37) prpE/codB predicted propionyl‑CoA synthetase with ATPase domain/cytosine transporter
?REL606 1238616 = 54 (0.530)coding (896/1299 nt) dadA D‑amino acid dehydrogenase small subunit

Only 100 of 111 total aligned reads displayed.

CCGGTATCCACCATTCTTGATGAAACCTACAAAATCGCCATTACCCGTTTCGATAACCGCATTCGTGTT  >  REL606/1238582‑1238650
                                  |                                  
ccGGTATCCACCATTCTTGATGAAACCTACAAAAt                                    <  1:3153044/35‑1 (MQ=255)
ccGGTATCCACCATTCTTGATGAAACCTACAAAAt                                    >  1:18364885/1‑35 (MQ=255)
ccGGTATCCACCATTCTTGATGAAACCTACAAAAt                                    <  1:5869364/35‑1 (MQ=255)
ccGGTATCCACCATTCTTGATGAAACCTACAAAAt                                    >  1:15727937/1‑35 (MQ=255)
ccGGTATCCACCATTCTTGATGAAACCTACAAAAt                                    >  1:15402893/1‑35 (MQ=255)
ccGGTATCCACCATTCTTGATGAAACCTACAAAAt                                    >  1:9031361/1‑35 (MQ=255)
ccGGTATCCACCATTCTTGATGAAACCTACAAAAt                                    >  1:10600682/1‑35 (MQ=255)
 cgttATCCACCATTCTTGATGAAACCTACAAAATc                                   <  1:5026829/32‑1 (MQ=255)
 cGGTATCCACCATTCTTGATGAAACCTACAAAATc                                   <  1:17154322/35‑1 (MQ=255)
 cGGTATCCACCATTCTTGATGAAACCTACAAAATc                                   <  1:4446157/35‑1 (MQ=255)
 cGGTATCCACCATTCTTGATGAAACCTACAAAATc                                   >  1:2663883/1‑35 (MQ=255)
 cGGTATCCACCATTCTTGATGAAACCTACAAAATc                                   >  1:2442038/1‑35 (MQ=255)
 cGGTATCCACCATTCTTGATGAAACCTACAAAATc                                   <  1:2192067/35‑1 (MQ=255)
 cGGTATCCAACATTCTTGATGAAACCTACAAAATc                                   <  1:1042563/35‑1 (MQ=255)
  ggTATCCACCATTCTTGATGAAACCTACAAAATCg                                  >  1:14947012/1‑35 (MQ=255)
  ggTATCCACCATTCTTGATGAAACCTACAAAATCg                                  <  1:14489038/35‑1 (MQ=255)
   gTATCCACCATTCTTGATGAAACCTACAAAATCGc                                 <  1:1334635/35‑1 (MQ=255)
   gTATCCACCATTCTTGATGAAACCTACAAAATCGc                                 >  1:18126842/1‑35 (MQ=255)
   gTATCCACCATTCTTGATGAAACCTACAAAATCGc                                 >  1:11129504/1‑35 (MQ=255)
   gTATCCACCATTCTTGATGAAACCTACAAAATCGc                                 <  1:11492943/35‑1 (MQ=255)
   gTATCCACCATTCTTGATGAAACCTACAAAATCGc                                 >  1:18149889/1‑35 (MQ=255)
    tATCCACCATTCTTGATGAAACCTACAAAATCGcc                                >  1:4210095/1‑35 (MQ=255)
    tATCCACCATTCTTGATGAAACCTACAAAATCGcc                                <  1:67636/35‑1 (MQ=255)
     aTCCACCATTCTTGATGAAACCTACAAAATCGCCa                               >  1:10631353/1‑35 (MQ=255)
     aTCCACCATTCTTGATGAAACCTACAAAATCGCCa                               <  1:17384527/35‑1 (MQ=255)
       ccaccaTTCTTGATGAAACCTACAAAATCGCCAtt                             >  1:9183864/1‑35 (MQ=255)
       ccaccaTTCTTGATGAAACCTACAAAATCGCCAtt                             >  1:20061320/1‑35 (MQ=255)
       ccaccaTTCTTGATGAAACCTACAAAATCGCCAtt                             >  1:5406015/1‑35 (MQ=255)
       ccaccaTTCTTGATGAAACCTACAAAATCGCCAtt                             >  1:7224611/1‑35 (MQ=255)
        caccaTTCTTGATGAAACCTACAAAATCGCCATTa                            >  1:12298695/1‑35 (MQ=255)
        caccaTTCTTGATGAAACCTACAAAATCGCCATTa                            >  1:12326695/1‑35 (MQ=255)
         accaTTCTTGATGAAACCTACAAAATCGCCATTAc                           >  1:8985557/1‑35 (MQ=255)
         accaTTCTTGATGAAACCTACAAAATCGCCATTAc                           >  1:19399206/1‑35 (MQ=255)
         accaTTCTTGATGAAACCTACAAAATCGCCATTAc                           >  1:5161583/1‑35 (MQ=255)
          ccaTTCTTGATGAAACCTACAAAATCGCTATTAcc                          >  1:3428564/1‑35 (MQ=255)
          ccaTTCTTGATGAAACCTACAAAATCGCCATTAcc                          >  1:5921439/1‑35 (MQ=255)
          ccaTTCTTGATGAAACCTACAAAATCGCCATTAcc                          >  1:1290461/1‑35 (MQ=255)
           caTTCTTGATGAAACCTACAAAATCGCCATTAccc                         >  1:6066021/1‑35 (MQ=255)
           caTTCTTGATGAAACCTACAAAATCGCCATTAccc                         >  1:6560349/1‑35 (MQ=255)
            aTTCTTGATGAAACCTACAAAATCGCCATTACCCg                        >  1:16131834/1‑35 (MQ=255)
            aTTCTTGATGAAACCTACAAAATCGCCATTACCCg                        >  1:18821707/1‑35 (MQ=255)
            aTTCTTGATGAAACCTACAAAATCGCCATTACCCg                        >  1:12088692/1‑35 (MQ=255)
            aTTCTTGATGAAACCTACAAAATCGCCATTACCCg                        >  1:281932/1‑35 (MQ=255)
             ttCTTGATGAAACCTGCAAAATCGCCATTACCCGt                       >  1:593722/1‑35 (MQ=255)
             ttCTTGATGAAACCTACAAAATCGCCATTACCCGt                       >  1:17576660/1‑35 (MQ=255)
             ttCTTGATGAAACCTACAAAATCGCCATTACCCGt                       >  1:9166616/1‑35 (MQ=255)
             ttCTTGATGAAACCTACAAAATCGCCATTACCCGt                       >  1:15254880/1‑35 (MQ=255)
              tCTTGATGAAACCTACAAAATCGCCATTACCTGtt                      >  1:15564841/1‑35 (MQ=255)
               cTTGATGAAACCTACAAAATCGCCATTACCCGttt                     >  1:14126869/1‑35 (MQ=255)
                 tgatgaAACCTACAAAATCGCCATTACCCGTTTCg                   >  1:3675405/1‑35 (MQ=255)
                  gatgaAACCTACAAAATCGCCATTACCCGTTTCGa                  >  1:15998989/1‑35 (MQ=255)
                  gatgaAACCTACAAAATCGCCATTACCCGTTTCGa                  >  1:7702801/1‑35 (MQ=255)
                  gatgaAACCTACAAAATCGCCATTACCCGTTTCGa                  >  1:9019340/1‑35 (MQ=255)
                   atgaAACCTACAAAATCGCCATTACCCGTTTCGAt                 >  1:10888602/1‑35 (MQ=255)
                   atgaAACCTACAAAATCGCCATTACCCGTTTCGAt                 >  1:8645233/1‑35 (MQ=255)
                   ataaacccaaaaaatTCGCCATTACCCGTTTCGAt                 <  1:993304‑M2/20‑1 (MQ=255)
                    tgaAACCTACAAAATCGCCATTACCCGTTTCGATa                >  1:12130482/1‑35 (MQ=255)
                    tgaAACCTACAAAATCGCCATTACCCGTTTCGATa                >  1:2795535/1‑35 (MQ=255)
                    tgaAACCTACAAAATCGCCATTACCCGTTTCGATa                >  1:17320762/1‑35 (MQ=255)
                    tgaAACCTACAAAATCGCCATTACCCGTTTCGATa                >  1:18097342/1‑35 (MQ=255)
                    taaacccaaaaaaaTCGCCATTACCCGTTTCGATa                <  1:10398839‑M2/21‑1 (MQ=255)
                     gaAACCTACAAAATCGCCATTACCCGTTTCGATaa               >  1:4899369/1‑35 (MQ=255)
                     gaAACCTACAAAATCGCCATTACCCGTTTCGATaa               >  1:16035181/1‑35 (MQ=255)
                     gaAACCTACAAAATCGCCATTACCCGTTTCGATaa               >  1:14186757/1‑35 (MQ=255)
                     gaAACCTACAAAATCGCCATTACCCGTTTCGATaa               >  1:1275784/1‑35 (MQ=255)
                     gaAACCTACAAAATCGCCATTACCCGTTTCGATaa               >  1:214160/1‑35 (MQ=255)
                     gaAACCTACAAAATCGCCATTACCCGTTTCGATaa               >  1:10017106/1‑35 (MQ=255)
                      aacccaaaaaatTCGCCATTACCCGTTTCGATAAc              <  1:6673431‑M2/23‑1 (MQ=255)
                      aaaCCTACAAAATCGCCATTACCCGTTTCGATAAc              >  1:10869605/1‑35 (MQ=255)
                      aaaCCTAAAAAATCGCCATTACCCGTTTCGATAAc              <  1:1156038/35‑1 (MQ=255)
                       acccaaaaaatTCGCCATTACCCGTTTCGATAAcc             <  1:17547192‑M2/24‑1 (MQ=255)
                       acccaaaaaatTCGCCATTACCCGTTTCGATAAcc             <  1:5918530‑M2/24‑1 (MQ=255)
                       acccaaaaaatTCGCCATTACCCGTTTCGATAAcc             <  1:9216358‑M2/24‑1 (MQ=255)
                       aaCCTACAAAATCGCCATTACCCGTTTCGATAAcc             >  1:12635115/1‑35 (MQ=255)
                        cccaaaaaatTCGCCATTACCCGTTTCGATAACCg            <  1:18675674‑M2/25‑1 (MQ=255)
                        cccaaaaaatTCGCCATTACCCGTTTCGATAACCg            <  1:5069163‑M2/25‑1 (MQ=255)
                         ccTACAAAATCGCCATTACCCGTTTCGATAACCGc           >  1:5088952/1‑35 (MQ=255)
                           taaaaatTCGCCATTACCCGTTTCGATAACCGCAt         <  1:9143273‑M2/28‑1 (MQ=255)
                           tACAAAATCGCCATTACCCGTTTCGATAACCGCAt         >  1:1191765/1‑35 (MQ=255)
                           tACAAAATCGCCATTACCCGTTTCGATAACCGCAt         >  1:12993355/1‑35 (MQ=255)
                           aaaaaatTCGCCATTACCCGTTTCGATAACCGCAt         <  1:3065550‑M2/28‑1 (MQ=255)
                           aaaaaatTCGCCATTACCCGTTTCGATAACCGCAt         <  1:454845‑M2/28‑1 (MQ=255)
                            aaaaatTCGCCATTACCCGTTTCGATAACCGCAtt        <  1:2820629‑M2/29‑1 (MQ=255)
                            aaaaatTCGCCATTACCCGTTTCGATAACCGCAtt        <  1:11939163‑M2/29‑1 (MQ=255)
                            aCAAAATCGCCATTACCCGTTTCGATAACCGCAtt        >  1:19009661/1‑35 (MQ=255)
                             cAAAATCGCCATTACCCGTTTCGATAACCGCATTc       >  1:6396718/1‑35 (MQ=255)
                             aaaatTCGCCATTACCCGTTTCGATAACCGCATTc       <  1:5708027‑M2/30‑1 (MQ=255)
                             aaaatTCGCCATTACCCGTTTCGATAACCGCATTc       <  1:16842277‑M2/30‑1 (MQ=255)
                             aaaatTCGCCATTACCCGTTTCGATAACCGCATTc       <  1:13836290‑M2/30‑1 (MQ=255)
                              aaaaTCGCCATTACCCGTTTCGATAACCGCATTCg      >  1:9369434/1‑35 (MQ=255)
                               aatTCGCCATTACCCGTTTCGATAACCGCATTCgt     <  1:6943466‑M2/32‑1 (MQ=255)
                               aatTCGCCATTACCCGTTTCGATAACCGCATTCgt     <  1:11655752‑M2/32‑1 (MQ=255)
                               aaaTCGCCATTACCCGTTTCGATAACCGCATTCgt     >  1:19010136/1‑35 (MQ=255)
                               aaaTCGCCATTACCCGTTTCGATAACCGCATTCgt     >  1:10183033/1‑35 (MQ=255)
                                atTCGCCATTACCCGTTTCGATAACCGCATTCgtg    <  1:4687762‑M2/33‑1 (MQ=255)
                                 tTCGCCATTACCCGTTTCGATAACCGCATTCgtgt   <  1:5522866‑M2/34‑1 (MQ=255)
                                 tTCGCCATTACCCGTTTCGATAACCGCATTCgtgt   <  1:17861928‑M2/34‑1 (MQ=255)
                                 aTCGCCATTACCCGTTTCGATAACCGCATTCgtgt   >  1:8629568/1‑35 (MQ=255)
                                  tCGCCATTACCCGTTTCGATAACCGCATTCGTGtt  <  1:8403073/35‑1 (MQ=255)
                                  tCGCCATTACCCGTTTCGATAACCGCATTCGTGtt  <  1:1609267/35‑1 (MQ=255)
                                  |                                  
CCGGTATCCACCATTCTTGATGAAACCTACAAAATCGCCATTACCCGTTTCGATAACCGCATTCGTGTT  >  REL606/1238582‑1238650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.