New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 212468 =63 (0.610)18 (0.200) 5/42 NT 18.6% intergenic (+46/‑53) accA/ldcC acetyl‑CoA carboxylase subunit alpha/lysine decarboxylase 2, constitutive
?REL606 235476 = 117 (1.140)intergenic (+3/+45) yafE/mltD predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase/predicted membrane‑bound lytic murein transglycosylase D

CTTCCTTAATCATAGCCTGCTCAAACCGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/212501‑212468
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGGCACCGGG  >  REL606/235476‑235490
                                  |||               
CTTCCTTAATCATAGCCTGCTCAAACCGTGGCGAA                   >  1:15256465/1‑35
 TTCCTTAATCATAGCCTGCTCAAACCGTGGCGAAA                  >  1:6411049/1‑35
  TCCTTAATCATAGCCTGCTCAAACCGTGGCGAAAA                 >  1:90852/1‑35
  TCCTTAATCATAGCCTGCTCAAACCGTGGCGAAAA                 >  1:606791/1‑35
     TTAATCATAGCCTGCTCAAACCGTGGCGAAAAAAA              >  1:16424864/1‑35
      TAATCATAGCCTGCTCAAACCGTGGCGAAAAAAAA             >  1:7156247/1‑35
        ATCATAGCCTGCTCAAACCGTGGCGAAAAAAAAAg           >  1:15146903/1‑34
        ATCATAGCCTGCTCAAACCGTGGCGAAAAAAAAAg           >  1:17214101/1‑34
        ATCATAGCCTGCTCAAACCGTGGCGAAAAAAAAAA           >  1:1624761/1‑35
        ATCATAGCCTGCTCAAACCGTGGCGAAAAAAAAAA           >  1:6242567/1‑35
         TCATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAG          >  1:6058309/1‑35
         TCATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAG          >  1:20437696/1‑35
          CATAGCCTGCTCAAACCGTGGCGATAAAAAAAAGc         >  1:2965927/1‑34
          CATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGc         >  1:8213368/1‑34
          CATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGa         >  1:4182871/1‑34
           ATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGcc        >  1:19096698/1‑33
           ATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGac        >  1:1441282/1‑33
           ATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGGC        >  1:9979774/1‑35
            TAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGacc       >  1:9400043/1‑32
            TAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGGCc       >  1:9862902/1‑34
              GCCTGCTCAAACCGTGGCGAAAAAAAAAAGGCAac     >  1:11531287/1‑33
              GCCTGCTCAAACCGTGGCGAAAAAAAAAAGGCACC     >  1:7683869/1‑35
               CCTGCTCAAACCGTGGCGAAAAAAAAAAGGCACCG    >  1:6581035/1‑35
               CCTGCTCAAACCGTGGCGAAAAAAAAAAGCCACCc    >  1:7447684/1‑34
                 TGCTCAAACCGTGGCGAAAAAAAAAAGGCACCcga  >  1:14244051/1‑32
                 TGCTCAAACCGTGGCGAAAAAAAAAAGGCACCGca  >  1:5983103/1‑33
                                  |||               
CTTCCTTAATCATAGCCTGCTCAAACCGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/212501‑212468
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGGCACCGGG  >  REL606/235476‑235490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.