New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 278928365 (0.630)8 (0.080) 4/46 NT 11.2% coding (192/1278 nt) yqcE predicted transporter
?REL606 3161174 = 67 (0.650)coding (557/1071 nt) ygjJ hypothetical protein

Only 100 of 143 total aligned reads displayed.

CAGAACTTAAGCGGCAACTTTCGTTATAGCGTCACCGCGACTCCTGCCGGACATCATGATGAAAGCAAA  >  REL606/3161140‑3161208
                                  |                                  
cAGAACTTAAGCGGCAACTTTCGTTATAGCGTCAc                                    <  1:14708427/35‑1 (MQ=255)
cAGAACTTAAGCGGCAACTTTCGTTATAGCGTCAc                                    >  1:3492322/1‑35 (MQ=255)
cAGAACTTAAGCGGCAACTTTCGTTATAGCGTCAc                                    >  1:9836135/1‑35 (MQ=255)
cAGAACTTAAGCGGCAACTTTCGTTATAGCGTCAc                                    >  1:8327699/1‑35 (MQ=255)
cAGAACTTAAGCGGCAACTTTCGTTATAGCGTCAc                                    >  1:1362947/1‑35 (MQ=255)
cAGAACTTAAGCGGCAACTTTCGTTATAGCGTCAc                                    <  1:13031941/35‑1 (MQ=255)
cAGAACTTAAGCGGCAACTTTCGTTATAGCGTCAc                                    >  1:4791274/1‑35 (MQ=255)
cAGAACTTAAGCGGCAACTTTCGTTATAGCGTCAc                                    <  1:875880/35‑1 (MQ=255)
 aGAACTTAAGCGGCAACTTTCGTTATAGCGTCAcc                                   >  1:10278872/1‑35 (MQ=255)
 aGAACTTAAGCGGCAACTTTCGTTATAGCGTCAcc                                   >  1:17961708/1‑35 (MQ=255)
 aGAACTTAAGCGGCAACTTTCGTTATAGCGTCAcc                                   >  1:4644384/1‑35 (MQ=255)
 aGAACTAAAGCGGCAACTTTCGTTATAGCGTCAcc                                   <  1:4288266/35‑1 (MQ=255)
  gaccTTAAGCGGCAACTTTCGTTATAGCGTCACcg                                  <  1:14074263/32‑1 (MQ=255)
  gAACTTAAGCGGCAACTTTCGTTATAGCGTCACcg                                  >  1:846941/1‑35 (MQ=255)
  gAACTAAAGCGGCAACTTTCGTTATAGCGTCACcg                                  <  1:7487364/35‑1 (MQ=255)
   aaCTTAAGCGGCAACTTTCGTTATAGCGTCACcgc                                 >  1:9222911/1‑35 (MQ=255)
    aCTTAAGCGGCAACTTTCGTTATAGCGTCACcgcg                                >  1:14789593/1‑35 (MQ=255)
    aCTTAAGCGGCAACTTTCGTTATAGCGTCACcgcg                                >  1:4991161/1‑35 (MQ=255)
    aCTTAAGCGGCAACTTTCGTTATAGCGTCACcgcg                                >  1:12698980/1‑35 (MQ=255)
    aCTTAAGCGGCAACTTTCGTTATAGCGTCACcgcg                                >  1:17642791/1‑35 (MQ=255)
    aCTTAAGCGGCAACTTTCGTTATAGCGTCACcgcg                                >  1:18656929/1‑35 (MQ=255)
     cTTAAGCGGCAACTTTCGTTATAGCGTCACCGCGa                               >  1:5836096/1‑35 (MQ=255)
     cTTAAGCGGCAACTTTCGTTATAGCGTCACCGCGa                               >  1:9936979/1‑35 (MQ=255)
      ttAAGCGGCAACTTTCGTTATAGCGTCACCGCGAc                              >  1:17431488/1‑35 (MQ=255)
       tAAGCGGCAACTTTCGTTATAGCGTCACCGCGACt                             >  1:274217/1‑35 (MQ=255)
       tAAGCGGCAACTTTCGTTATAGCGTCACCGCGACt                             >  1:4552902/1‑35 (MQ=255)
         aGCGGCAACTTTCGTTATAGCGTCACCGCGACTcc                           >  1:12848877/1‑35 (MQ=255)
          gCGGCAACTTTCGTTATAGCGTCACCGCGACTCCt                          >  1:8204090/1‑35 (MQ=255)
           cGGCAACTTTCGTTATAGCGTCACCGCGACTCCta                         >  1:11495852/1‑34 (MQ=255)
            ggCAACTTTCGTTATAGCGTCACCGCGACTCCTGc                        >  1:2212858/1‑35 (MQ=255)
            ggCAACTTTCGTTATAGCGTCACCGCGACTCCTGc                        >  1:4288601/1‑35 (MQ=255)
            ggCAACTTTCGTTATAGCGTCACCGCGACTCCTGc                        >  1:16087242/1‑35 (MQ=255)
             gCAACTTTCGTTATAGCGTCACCGCGACTCCTGcc                       >  1:3084019/1‑35 (MQ=255)
             gCAACTTTCGTTATAGCGTCACCGCGACTCCTGcc                       >  1:14149047/1‑35 (MQ=255)
             gCAACTTTCGTTATAGCGTCACCGCGACTCCTGcc                       >  1:15075561/1‑35 (MQ=255)
             gCAACTTTCGTTATAGCGTCACCGCGACTCCTGcc                       >  1:12116446/1‑35 (MQ=255)
              cAACTTTCGTTATAGCGTCACCGCGACTCCTGCCg                      >  1:14205998/1‑35 (MQ=255)
              cAACTTTCGTTATAGCGTCACCGCGACTCCTGCCg                      >  1:18182872/1‑35 (MQ=255)
               aaCTTTCGTTATAGCGTCACCGCGACTCCTGCCgg                     >  1:7438603/1‑35 (MQ=255)
               aaCTTTCGTTATAGCGTCACCGCGACTCCTGCCgg                     >  1:11856228/1‑35 (MQ=255)
               aaCTTTCGTTATAGCGTCACCGCGACTCCTGCCgg                     >  1:15376546/1‑35 (MQ=255)
               aaCTTTCGTTATAGCGTCACCGCGACTCCTGCCgg                     >  1:1694479/1‑35 (MQ=255)
               aaCTTTCGTTATAGCGTCACCGCGACTCCTGCCgg                     >  1:15489496/1‑35 (MQ=255)
                 cTTTCGTTATAGCGTCACCGCGACTCCTGCCGGAc                   >  1:520347/1‑35 (MQ=255)
                 cTTTCGTTATAGCGTCACCGCGACTCCTGCCGGAc                   >  1:10096575/1‑35 (MQ=255)
                 cTTTCGTTATAGCGTCACCGCGACTCCTGCCGGAc                   >  1:61512/1‑35 (MQ=255)
                  tttCGTTATAGCGTCACCGCGACTCCTGCCGGAca                  >  1:4437621/1‑35 (MQ=255)
                   ttctttatgccccccCCGCGACTCCTGCCGGAcat                 <  1:6737546‑M2/20‑1 (MQ=255)
                   ttCGTTATAGCGTCACCGCGACTCCTGCCGGAcat                 >  1:9091923/1‑35 (MQ=255)
                    tctttatgccccccCCGCGACTCCTGCCGGAcatc                <  1:358603‑M2/21‑1 (MQ=255)
                      gTTATAGCGTCACCGCGACTCCTGCCGGAcatcat              >  1:19846228/1‑35 (MQ=255)
                      gTTATAGCGTCACCGCGACTCCTGCCGGAcatcat              >  1:18207209/1‑35 (MQ=255)
                       ttatcccccccCCGCGACTCCTGCCGGACATCatg             <  1:13670509‑M2/24‑1 (MQ=255)
                       ttATAGCGTCACCGCTACTCCTGCCAGACATCatg             >  1:4410409/1‑35 (MQ=37)
                       ttATAGCGTCACCGCGACTCCTGCCGGACATCatg             >  1:14595829/1‑35 (MQ=255)
                       ttATAGCCCCCCCGCGACTCCTGCAGGACATCatg             <  1:19888516/35‑1 (MQ=19)
                        tataGCGTCACCGCGACTCCTGCCGGACATCatga            >  1:8868210/1‑35 (MQ=255)
                        tataGCGCCCCCGCGACTCCTGCCGGACATCatga            <  1:4097175/35‑1 (MQ=37)
                         cacccccccCCGCGACTCCTGCCGGACATCatgat           <  1:20557883‑M2/26‑1 (MQ=255)
                         ataccccccCCGCGACTCCTGCCGGACATCatgat           <  1:4630988‑M2/26‑1 (MQ=255)
                         ataGCGTCACCGCGACTCCTGCCGGACATCatgat           >  1:7955977/1‑35 (MQ=255)
                         ataGCGTCACCGCGACTCCTGCCGGACATCatgat           >  1:8115398/1‑35 (MQ=255)
                         ataGCGTCACCGCGACTCCTGCCGGACATCatgat           >  1:9199903/1‑35 (MQ=255)
                         aggccccccCCGCGACTCCTGCCGGACATCatgat           <  1:11410107‑M2/26‑1 (MQ=255)
                          tcgcccccCCGCGACTCCTGCCGGACATCatgatg          <  1:1979009‑M2/27‑1 (MQ=255)
                          taGCGTCACCGCGACTCCTGCCGGACATCatgatg          >  1:14093698/1‑35 (MQ=255)
                          taGCGTCACCGCGACTCCTGCCGGACATCatgatg          >  1:17998111/1‑35 (MQ=255)
                          taGCGTCACCGCGACTCCTGCCGGACATCatgatg          >  1:15468306/1‑35 (MQ=255)
                          ggccccccCCGCGACTCCTGCCGGACATCatgatg          <  1:5549364‑M2/27‑1 (MQ=255)
                          gaccccccCCGCGACTCCTGCCGGACATCatgatg          <  1:615801‑M2/27‑1 (MQ=255)
                          agccccccCCGCGACTCCTGCCGGACATCatgatg          <  1:14343630‑M2/27‑1 (MQ=255)
                           cccccccCCGCGACTCCTGCCGGACATCAtgatga         <  1:14643040‑M2/28‑1 (MQ=255)
                           aGCGTCACCGCGACTCCTGCCGGACATCAtgatga         >  1:2389839/1‑35 (MQ=255)
                           aGCGTCACCGCGACTCCTGCCGGACATCAtgatga         >  1:5992381/1‑35 (MQ=255)
                            gcccccCCGCGACTCCTGCCGGACATCATGATGaa        <  1:11617578‑M2/29‑1 (MQ=255)
                            gCGTCACCGCGACTCCTGCCGGACATCATGATGaa        >  1:19372995/1‑35 (MQ=255)
                            gCGTCACCGCGACTCCTGCCGGACATCATGATGaa        >  1:185525/1‑35 (MQ=255)
                            gCGTCACCGCGACTCCTGCCGGACATCATGATGaa        >  1:6588900/1‑35 (MQ=255)
                             cccccCCGCGACTCCTGCCGGACATCATGATGaaa       <  1:13754472‑M2/30‑1 (MQ=255)
                             cccccCCGCGACTACTGCCGGACATCATGATGaaa       <  1:6008348‑M2/30‑1 (MQ=255)
                             cGTCACCGCGACTCCTGCCGGACATCATGATGaaa       >  1:4986632/1‑35 (MQ=255)
                             cGTCACCGCGACTCCTGCCGGACATCATGATGaaa       >  1:18203182/1‑35 (MQ=255)
                              gcccCCGCGACTCCTGCCGGACATCATGATGAAAg      <  1:5680410‑M2/31‑1 (MQ=255)
                              gTCACCGCGACTCCTGCCGGACATCAtgatgagat      >  1:10071448/1‑32 (MQ=255)
                              gTCACCGCGACTCCTGCCGGACATCATGATGaagg      >  1:14128068/1‑33 (MQ=255)
                               tCACCGCGACTCCTGCCGGACATCATGATGaaagc     >  1:2143478/1‑35 (MQ=255)
                                ccCCGCGACTCCTGCCGGACATCATGATGAAAGCa    <  1:17648253‑M2/33‑1 (MQ=255)
                                cACCGCGACTCCTGCCGGACATCATGATGaaagca    >  1:7931935/1‑35 (MQ=255)
                                cACCGCGACTCCTGCCGGACATCATGATGaaagca    >  1:17102591/1‑35 (MQ=255)
                                cACCGCGACTCCTGCCGGACATCATGATGaaagca    >  1:2800596/1‑35 (MQ=255)
                                cACCGCGACTCCTGCCGGACATCATGATGaaagca    >  1:1589281/1‑35 (MQ=255)
                                 cCCGCGACTCCTGCCGGACATCATGATGAAAGCaa   <  1:769005‑M2/34‑1 (MQ=255)
                                 cCCGCGACTCCTGCCGGACATCATGATGAAAGCaa   <  1:13135272‑M2/34‑1 (MQ=255)
                                 cCCGCGACTCCTGCCGGACATCATGATGAAAGCaa   <  1:16792504‑M2/34‑1 (MQ=255)
                                  ccGCGACTCCTGCCGGACATCATGATGaaagcaaa  <  1:4222685/35‑1 (MQ=255)
                                  ccGCGACTCCTGCCGGACATCATGATGaaagcaaa  >  1:5360591/1‑35 (MQ=255)
                                  ccGCGACTCCTGCCGGACATCATGATGaaagcaaa  >  1:13401436/1‑35 (MQ=255)
                                  ccGCGACTCCTGCCGGACATCATGATGaaagcaaa  <  1:13336659/35‑1 (MQ=255)
                                  ccGCGACTCCTGCCGGACATCATGATGaaagcaaa  <  1:19391787/35‑1 (MQ=255)
                                  ccGCGACTCCTGCCGGACATCATGATGaaagcaaa  <  1:16464146/35‑1 (MQ=255)
                                  |                                  
CAGAACTTAAGCGGCAACTTTCGTTATAGCGTCACCGCGACTCCTGCCGGACATCATGATGAAAGCAAA  >  REL606/3161140‑3161208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.