New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3656754 =92 (0.900)4 (0.070) 3/28 NT 7.1% coding (410/996 nt) yiaH conserved inner membrane protein
?REL606 = 4045305 51 (0.850)coding (165/1407 nt) yihP predicted transporter

AATCACTACCATTAGTACCAGCAACATTTTTCCGCCGACGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3656797‑3656754
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacgttctGGGGCTGCCAGGCACCTATGGCGGCATTATCTTT  <  REL606/4045305‑4045272
                                                                              
AATCCCTACCATTAGTACCAGCAACATTTTTCCGC                                             <  1:2391377/35‑1
AATCACTACCATTAGTACCAGCAACATTTTTCCGC                                             >  1:3947711/1‑35
 ATCATTACCATTAGTACCAGCAACATTTTTCCGCC                                            >  1:6765497/1‑35
 ATCACTACCATTAGTACCAGCAACATTTTTCCGCC                                            >  1:9799217/1‑35
  cccCTACCATTAGTACCAGCAACATTTTTCCGCCG                                           <  1:19237639/32‑1
  cccCTACCATTAGTACCAGCAACATTTTTCCGCCG                                           <  1:9105539/32‑1
   ccCTACCATTAGTACCAGCAACATTTTTCCGCCGA                                          <  1:6682389/33‑1
   CACTACCATTAGTACCAGCAACATTTTTCCGCCGA                                          >  1:8068441/1‑35
    ACTACCATTAGTACCAGCAACATTTTTCCGCCGAC                                         >  1:493200/1‑35
     CTACCATTAGTACCAGCAACATTTTTCCGCCGACG                                        >  1:19682419/1‑35
     CTACCATTAGTACCAGCAACATTTTTCCGCCGACG                                        >  1:20393221/1‑35
     CTACCATTAGTACCAGCAACATTTTTCCGCCGACG                                        >  1:18261404/1‑35
     CTACCATTAGTACCAGCAACATTTTTCCGCCGACG                                        <  1:4981091/35‑1
     CTACCATTAGTACCAGCAACATTTTTCCGCCGACG                                        <  1:10601048/35‑1
     CTACCATTAGTACCAGCAACATTTTTCCGCCGACG                                        >  1:935486/1‑35
     CTACCATTAGTACCAGCAACATTTTTCCGCCGACG                                        >  1:876500/1‑35
      TACCATTAGTACCAGCAACATTTTTCCGCCGACGT                                       >  1:1715408/1‑35
       ACCATTAGTACCAGCAACATTTTTCCGCCGACGTT                                      >  1:19822027/1‑35
       ACCATTAGTACCAGCAACATTTTTCCGCAGACGTT                                      <  1:6878230/35‑1
        CCATTAGTCCCAGCAACATTTTTCCGCCGACGTTC                                     <  1:2163706/35‑1
        CCATTAGTACCAGCAACATTTTTCCGCCGCCGTTC                                     >  1:16427855/1‑35
        CCATTAGTACCAGCAACATTTTTCCGCCGACGTTC                                     <  1:16706530/35‑1
        CCATTAGTACCAGCAACATTTTTCCGCCGACGTTC                                     >  1:2604825/1‑35
        CCATTAGTACCAGCAACATTTTTCCGCCGACGTTC                                     >  1:1491891/1‑35
        CCATTAGTACCAGCAACATTTTTCCGCCGACGTTC                                     <  1:13692086/35‑1
         CATTAGTCCCAGCAACATTTTTCCGCCGACGTTCT                                    <  1:16118515/35‑1
         CATTAGTACCAGCAACATTTTTCCGCCGACGTTCT                                    >  1:2513690/1‑35
         CATTAGTACCAGCAACATTTTCCCGCCGACGTTCT                                    <  1:2942341/35‑1
                          TTTTTCCCCCGACGTTCTGGGGCTGCCAGGCACCT                   <  1:5868579/35‑1
                           TTTTCCCCCGACGTTCTGGGGCTGCCAGGCACCTA                  <  1:7237962/35‑1
                           TTTTCCCCCGACGTTCTGGGGCTGCCAGGCACCTA                  <  1:10969683/35‑1
                            TTTCCCCCGACGTTCTGGGGCTGCCAGGCACCTAT                 <  1:3516354/35‑1
                             TTCCCCCGACGTTCTGGGGCTGCCAGGCACCTATG                <  1:12473131/35‑1
                               accCCGACGTTCTGGGGCTGCCAGGCACCTATGGC              <  1:5760073/32‑1
                               accCCGACGTTCTGGGGCTGCCAGGCACCTATGGC              <  1:17194179/32‑1
                                ccCCGACGTTCTGGGGCTGCCAGGCACCTATGGCG             <  1:18236714/33‑1
                                ccCCGACGTTCTGGGGCTGCCAGGCACCTATGGCG             <  1:4042087/33‑1
                                ccCCGACGTTCTGGGGCTGCCAGGCACCTATGGCG             <  1:2699706/33‑1
                                acCCGACGTTCTGGGGCTGCCAGGCACCTATGGCG             <  1:1913319/33‑1
                                 cCCGACGTTCTGGGGCTGCCAGGCACCTATGGCGG            <  1:9891996/34‑1
                                 cCCGACGTTCTGGGGCTGCCAGGCACCTATGGCGG            <  1:2874248/34‑1
                                 cCCGACGTTCTGGGGCTGCCAGGCACCTATGGCGG            <  1:16348443/34‑1
                                 cCCGACGTTCTGGGGATGCCAGGCACCTATGGCGG            <  1:15061927/34‑1
                                  CCGACGTTCTGGGGCTGCCAGGCACCTATGGCGGg           >  1:18272024/1‑34
                                   CGACGTTCTGGGGCTGCCAGGCACCTATGGCGGgg          >  1:7387351/1‑33
                                   CGACGTTCTGGGGCTGCCAGGCACCTATGGCGGCA          <  1:6172956/35‑1
                                   CGACGTTCTGGGGCTGCCAGGCACCTATGGCGGCA          <  1:20328470/35‑1
                                   CGACGTTCTGGGGCTGCCAGGCACCTATGGCGGCA          <  1:828138/35‑1
                                    GACGTTCTGGGGCTGCCAGGCACCTATGGGGGCAT         <  1:6320245/35‑1
                                    GACGTTCTGGGGCTGCCAGGCACCTATGGCGGggg         >  1:7821823/1‑32
                                    GACGTTCTGGGGCTGCCAGGCACCTATGGCGGggg         >  1:5743883/1‑32
                                    GACGTTCTGGGGCTGCCAGGCACCTATGGCGGggg         >  1:3915377/1‑32
                                    GACGTTCTGGGGCTGCCAGGCACCTATGGCGGggg         >  1:4068314/1‑32
                                    GACGTTCTGGGGCTGCCAGGCACCTATGGCGGggc         >  1:5120442/1‑32
                                    GACGTTCTGGGGCTGCCAGGCACCTATGGCGGCAT         <  1:11563066/35‑1
                                    GACGTTCTGGGGCTGCCAGGCACCTATGGCGGCAT         <  1:13414611/35‑1
                                    GACGTTCTGGGGCTGCCAGGCACCTATGGCGGCAT         <  1:13451379/35‑1
                                    GACGTTCTGGGGCTGCCAGGCACCTATGGCGGCAT         <  1:9268650/35‑1
                                    GACGTTCTGGGGCTGCCAGGCACCTATGGCGGCAT         <  1:19506456/35‑1
                                    GACGTTCTGGGGCTGCCAGGCACCTATGGCGGCAT         <  1:19362577/35‑1
                                    GACGTTCTGGGGCTGCCAGGCACCTATGGCGGCAT         <  1:16844323/35‑1
                                     ACGTTCTGGGGCTGCCAGGCACCTATGGCGGCATT        <  1:1094176/35‑1
                                     ACGTTCTGGGGCTGCCAGGCACCTATGGCGGCATT        <  1:16041242/35‑1
                                     ACGTTCTGGGGCTGCCAGGCACCTATGGCGGCATT        <  1:16825966/35‑1
                                     ACGTTCTGGGGCTGCCAGGCACCTATGGCGGCATT        <  1:12176396/35‑1
                                      CGTTCTGGGGCTGCCAGGCACCTATGGCGGCATTA       <  1:11297063/35‑1
                                      CGTTCTGGGGCTGCCAGGCACCTATGGCGGCATTA       <  1:13663131/35‑1
                                      CGTTCTGGGGCTGCCAGGCACCTATGGCGGCATTA       <  1:8674602/35‑1
                                      CGTTCTGGGGCTGCCAGGCACCTATGGCGGCATTA       <  1:2098833/35‑1
                                       GTTCTGGGGCTGCCAGGCACCTATGGCGGCATTAT      <  1:8262233/35‑1
                                       GTTCTGGGGCTGCCAGGCACCTATGGCGGCATTAT      <  1:11811635/35‑1
                                       GTTCTGGGGCTGCCAGGCACCTATGGCGGCATTAT      <  1:16090883/35‑1
                                       GTTCTGGGGCTGCCAGGCACCTATGGCGGCATTAT      <  1:15830959/35‑1
                                       GTTCTGGGGCTGCAAGGCACCTATGGCGGCATTAT      <  1:12252997/35‑1
                                        TTCTGGGGCTGCCAGGCACCTATGGCGGCATTATC     <  1:17993828/35‑1
                                        TTCTGGGGCTGCCAGGCACCTATGGCGGCATTATC     <  1:9287825/35‑1
                                         TCTGGGGCTGCCAGGCACCTATGGCGGCATTATCT    <  1:11542982/35‑1
                                         TCTGGGGCTGCCAGGCACCTATGGCGGCATTATCT    <  1:11462184/35‑1
                                         TCTGGGGCTGCCAGGCACCTATGGCGGCATTATCT    <  1:14318973/35‑1
                                         TCTGGGGCTGCCAGGAACCTATGGCGGCATTATCT    <  1:1534504/35‑1
                                          CTGGGGCTGCCAGGCACCTATGGCGGCATTATCTT   <  1:736012/35‑1
                                          CTGGGGCTGCCAGGCACCTATGGCGGCATTATCTT   <  1:10948748/35‑1
                                           TGGGGCTGCCAGGCACCTATGGCGGCATTATCTTT  <  1:6701251/35‑1
                                           TGGGGCTGCCAGGCACCTATGGCGGCATTATCTTT  <  1:12847364/35‑1
                                           TGGGGCTGCCAGGCACCTATGGCGGCATTATCTTT  <  1:6395353/35‑1
                                           TGGGGCTGCCAGGCACCTATGGCGGCATTATCTTT  <  1:16584042/35‑1
                                           TGGGGCTGCCAGGCACCTATGGCGGCATTATCTTT  <  1:324298/35‑1
                                                                              
AATCACTACCATTAGTACCAGCAACATTTTTCCGCCGACGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3656797‑3656754
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacgttctGGGGCTGCCAGGCACCTATGGCGGCATTATCTTT  <  REL606/4045305‑4045272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.