Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,990 IS150 (+) +3 bp 100% intergenic (‑32/‑496) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16990 =0 (0.000)81 (0.790) 38/48 NT 100% intergenic (‑32/‑498) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 590471 NA (NA)noncoding (1977/1977 nt) IS150 repeat region
* ? REL606 = 169920 (0.000)58 (0.560) 29/48 NT 100% intergenic (‑34/‑496) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 181 total aligned reads displayed.

TATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGC  >  REL606/16958‑17026
                                  |                                  
tataGGGGGCCTCGGGTTGATAGTAAAATATCACt                                    >  1:10947537/1‑35 (MQ=255)
tataGGGGGCCTCGGGTTGATAGTAAAATATCACt                                    >  1:14496406/1‑35 (MQ=255)
gtttaactgtccaactttttggggtcagtacaACt                                    <  1:14056798‑M1/3‑1 (MQ=255)
gtttaactgtcaaactttttggggtcagtacaACt                                    >  1:15646708‑M1/33‑35 (MQ=255)
 tttaactgtccaactttttggggtcagtacaACTc                                   >  1:9527921‑M1/32‑35 (MQ=255)
 tttaactgtccaactttttggggtcagtacaACTc                                   >  1:6612182‑M1/32‑35 (MQ=255)
 tttaactgtccaactttttggggtcagtacaACTc                                   <  1:4307335‑M1/4‑1 (MQ=255)
 tttaactgtccaactttttggggtcagtacaACTc                                   <  1:17125584‑M1/4‑1 (MQ=255)
  ttaactgtccaactttttggggtcagtacaACTCg                                  >  1:17821865‑M1/31‑35 (MQ=255)
  taGGGGGCCTCGGGTTGATAGTAAAATATCACTtg                                  >  1:8961776‑M1/1‑33 (MQ=255)
   taactgtccaactttttggggtcagtacaACTCgg                                 >  1:8864062‑M1/30‑35 (MQ=255)
   taactgtccaactttttggggtcagtacaACTCgg                                 >  1:19192595‑M1/30‑35 (MQ=255)
   aGGGGGCCTCGGGTTGATAGTAAAATATCACTtgt                                 >  1:5052183‑M1/1‑32 (MQ=255)
     actgtccaactttttggggtcagtacaACTCgggg                               >  1:9843746‑M1/28‑35 (MQ=255)
      gggCCTCGGGTTGATAGTAAAATATCACTtgtact                              >  1:8353596‑M1/1‑29 (MQ=255)
      gggCCTCGGGTTGATAGTAAAATATCACTtgtact                              >  1:5993962‑M1/1‑29 (MQ=255)
      ctgtccaactttttggggtcagtacaACTCGGGGc                              <  1:16976552‑M1/9‑1 (MQ=255)
      ctgtccaactttttggggtcagtacaACTCGGGGc                              <  1:16740188‑M1/9‑1 (MQ=255)
      ctgtccaactttttggggtcagtacaACTCGGGGc                              >  1:5256587‑M1/27‑35 (MQ=255)
       tgtccaactttttggggtcagtacaACTCGGGGCt                             <  1:18080528‑M1/10‑1 (MQ=255)
       tgtccaactttttggggtcagtacaACTCGGGGCt                             <  1:1716522‑M1/10‑1 (MQ=255)
       tgtccaactttttggggtcagtacaACTCGGGGCt                             <  1:16010254‑M1/10‑1 (MQ=255)
       tgtccaactttttggggtcagtacaACTCGGGGCt                             >  1:271521‑M1/26‑35 (MQ=255)
       ggCCTCGGGTTGATAGTAAAATATCACTtgtactg                             <  1:3828421‑M1/35‑8 (MQ=255)
       ggCCTCGGGTTGATAGTAAAATATCACTtgtactg                             >  1:17143979‑M1/1‑28 (MQ=255)
        gtccaactttttggggtcagtacaACTCGGGGCtt                            >  1:14460477‑M1/25‑35 (MQ=255)
        gtccaactttttggggtcagtacaACTCGGGGCtt                            >  1:9649708‑M1/25‑35 (MQ=255)
        gtccaactttttggggtcagtacaACTCGGGGCtt                            >  1:17608611‑M1/25‑35 (MQ=255)
        gtccaactttttggggtcagtacaACTCGGGGCtt                            >  1:17250590‑M1/25‑35 (MQ=255)
        gtccaactttttggggtcagtacaACTCGGGGCtt                            >  1:15839655‑M1/25‑35 (MQ=255)
        gtccaactttttggggtcagtacaACTCGGGGCtt                            >  1:3354373‑M1/25‑35 (MQ=255)
         tccaactttttggggtcagtacaACTCGGGGCttt                           <  1:4087498‑M1/12‑1 (MQ=255)
         tccaactttttggggtcagtacaACTCGGGGCttt                           >  1:2587083‑M1/24‑35 (MQ=255)
          cgcggGTTGATAGTAAAATATCACTtgtactgcac                          <  1:17364000‑M1/33‑11 (MQ=255)
          ccaactttttggggtcagtacaACTCGGGGCtttt                          >  1:13874678‑M1/23‑35 (MQ=255)
          ccaactttttggggtcagtacaACTCGGGGCtttt                          <  1:7380613‑M1/13‑1 (MQ=255)
          ccaactttttggggtcagtacaACTCGGGGCtttt                          <  1:339824‑M1/13‑1 (MQ=255)
          ccaactttttggggtcagtacaACTCGGGGCtttt                          >  1:2883616‑M1/23‑35 (MQ=255)
          cTCGGGTTGATAGTAAAATATCACTtgtactgcac                          <  1:15139544‑M1/35‑11 (MQ=255)
          cTCGGGTTGATAGTAAAATATCACTtgtactgcac                          <  1:14841937‑M1/35‑11 (MQ=255)
            cGGGTTGATAGTAAAATATCACTtgtactgcaccc                        >  1:15724519‑M1/1‑23 (MQ=255)
            aactttttggggtcagtacaACTCGGGGCTTTtct                        >  1:19955870‑M1/21‑35 (MQ=255)
            aactttttggggtcagtacaACTCGGGGCTTTtct                        >  1:4764112‑M1/21‑35 (MQ=255)
              ctttttggggtcagtacaACTCGGGGCTTTTctct                      <  1:14304705‑M1/17‑1 (MQ=255)
              ctttttggggtcagtacaACTCGGGGCTTTTctct                      >  1:19131480‑M1/19‑35 (MQ=255)
               tttttggggtcagtacaACTCGGGGCTTTTCTCTa                     <  1:20383412‑M1/18‑1 (MQ=255)
                ttttggggtcagtacaACTCGGGGCTTTTCTCTAt                    <  1:11581269‑M1/19‑1 (MQ=255)
                ttttggggtcagtacaACTCGGGGCTTTTCTCTAt                    >  1:14785681‑M1/17‑35 (MQ=255)
                ttGATAGTAAAATATCACTtgtactgcacccattt                    <  1:18534574‑M1/35‑17 (MQ=255)
                ttGATAGTAAAATATCACTtgtactgcacccattt                    >  1:19606351‑M1/1‑19 (MQ=255)
                ttGATAGTAAAATATCACTtgtactgcacccattt                    <  1:13620988‑M1/35‑17 (MQ=255)
                 tttggggtcagtacaACTCGGGGCTTTTCTCTATc                   <  1:16140927‑M1/20‑1 (MQ=255)
                 tttggggtcagtacaACTCGGGGCTTTTCTCTATc                   >  1:5909647‑M1/16‑35 (MQ=255)
                 tGATAGTAAAATATCACTtgtactgcacccatttt                   <  1:6690504‑M1/35‑18 (MQ=255)
                  tttgggtcagtacaACTCGGGGCTTTTCTCTATCt                  <  1:10753225‑M1/21‑1 (MQ=255)
                  ttggggtcagtacaACTCGGGGCTTTTCTCTATCt                  >  1:6185761‑M1/15‑35 (MQ=255)
                  ttggggtcagtacaACTCGGGGCTTTTCTCTATCt                  >  1:6380233‑M1/15‑35 (MQ=255)
                  ttggggtcagtacaACTCGGGGCTTTTCTCTATCt                  >  1:12181362‑M1/15‑35 (MQ=255)
                  ttggggtcagtacaACTCGGGGCTTTTCTCTATCt                  >  1:8425105‑M1/15‑35 (MQ=255)
                  ttggggtcagtacaACTCGGGGCTTTTCTCTATCt                  >  1:18705317‑M1/15‑35 (MQ=255)
                   tggggtcagtacaACTCGGGGCTTTTCTCTATCTg                 >  1:18508548‑M1/14‑35 (MQ=255)
                   tggggtcagtacaACTCGGGGCTTTTCTCTATCTg                 >  1:11507293‑M1/14‑35 (MQ=255)
                   aTAGTAAAATATCACTtgtactgcacccattttgt                 <  1:8605442‑M1/35‑20 (MQ=255)
                   aTAGTAAAATATCACTtgtactgcacccattttgt                 <  1:11299600‑M1/35‑20 (MQ=255)
                   aTAGTAAAATATCACTtgtactgcacccattttgt                 <  1:11238373‑M1/35‑20 (MQ=255)
                    ggggtcagtacaACTCGGGGCTTTTCTCTATCTGc                >  1:6825455‑M1/13‑35 (MQ=255)
                     aGTAAAATATCACTtgtactgcacccattttgttt               >  1:11670229‑M1/1‑14 (MQ=255)
                     aGTAAAATATCACTtgtactgcacccattttgttg               >  1:17978715‑M1/1‑14 (MQ=255)
                       tAAAATATCACTtgtactgcacccattttgttgga             >  1:8021345‑M1/1‑12 (MQ=255)
                       tAAAATATCACTtgtactgcacccattttgttgga             >  1:963334‑M1/1‑12 (MQ=255)
                       gtcagtacaACTCGGGGCTTTTCTCTATCTGCcgg             <  1:2786296‑M1/26‑2 (MQ=255)
                        aaaaTATCACTtgtactgcacccattttgttggac            >  1:8669952‑M1/1‑11 (MQ=255)
                        aaaaTATCACTtgtactgcacccattttgttggac            >  1:10467269‑M1/1‑11 (MQ=255)
                        aaaaTATCACTtgtactgcacccattttgttggac            <  1:16589599‑M1/35‑25 (MQ=255)
                         cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc           >  1:10164638‑M1/8‑35 (MQ=255)
                         cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc           >  1:5260650‑M1/8‑35 (MQ=255)
                         cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc           <  1:15894172‑M1/28‑1 (MQ=255)
                         cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc           >  1:3448358‑M1/8‑35 (MQ=255)
                         aaaTATCACTtgtactgcacccattttgttggacg           >  1:6968977‑M1/1‑10 (MQ=255)
                         aaaTATCACTtgtactgcacccattttgttggacg           >  1:17462557‑M1/1‑10 (MQ=255)
                         aaaTATCACTtgtactgcacccattttgttggacg           >  1:8608878‑M1/1‑10 (MQ=255)
                         aaaTATCACTtgtactgcacccattttgttggacg           <  1:11176700‑M1/35‑26 (MQ=255)
                         aaaTATCACTtgtactgcacccattttgttggacg           >  1:9355197‑M1/1‑10 (MQ=255)
                          agtacaACTCGGGGCTTTTCTCTATCTGCCGTTCa          <  1:19304301‑M1/29‑1 (MQ=255)
                          agtacaACTCGGGGCTTTTCTCTATCTGCCGTTCa          <  1:13747648‑M1/29‑1 (MQ=255)
                          agtacaACTCGGGGCTTTTCTCTATCTGCCGTTCa          >  1:12968855‑M1/7‑35 (MQ=255)
                          aaTATCACTtgtactgcacccattttgttggacga          <  1:9186861‑M1/35‑27 (MQ=255)
                            tacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGc        <  1:19668581‑M1/31‑1 (MQ=255)
                             atCACTtgtactgcacccattttgttggacgatga       <  1:5610025‑M1/35‑30 (MQ=255)
                             atCACTtgtactgcacccattttgttggacgatga       <  1:11205532‑M1/35‑30 (MQ=255)
                             atCACTtgtactgcacccattttgttggacgatga       >  1:3006609‑M1/1‑6 (MQ=255)
                             atCACTtgtactgcacccattttgttggacgatga       <  1:11645009‑M1/35‑30 (MQ=255)
                              tCACTtgtactgcacccattttgttggacgatgaa      >  1:10125823‑M1/1‑5 (MQ=255)
                              caACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTa      >  1:369874‑M1/3‑35 (MQ=255)
                                aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt    >  1:828908/1‑35 (MQ=255)
                                aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt    <  1:19768282/35‑1 (MQ=255)
                                aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt    <  1:17816292/35‑1 (MQ=255)
                                 cTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATg   <  1:4069433/35‑1 (MQ=255)
                                  tCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGc  <  1:2495305/35‑1 (MQ=255)
                                  tCGGGGCTTTTCTCTATCTGCCGGTCAGCTAATGc  >  1:13383927/1‑35 (MQ=255)
                                  |                                  
TATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGC  >  REL606/16958‑17026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.