New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 506020 = | 104 (1.010) | 12 (0.120) | 4/48 | NT | 14.8% | intergenic (+28/‑62) | allR/gcl | DNA‑binding transcriptional repressor/glyoxylate carboligase |
? | REL606 | 758029 = | 34 (0.330) | coding (806/1266 nt) | tolA | cell envelope integrity inner membrane protein TolA |
TCAAAAAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/506031‑506020 ‑‑‑‑‑‑‑‑‑‑‑‑CCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAG > REL606/758029‑758061 ggAAAAAAACCCCCGCCGCAGACAAAAAAGCGGCA < 1:5963280/33‑1 ggAAAAAACCCCCGCCGCAGACAAAAAAGCGGCAG < 1:10548781/33‑1 gAAAAAAACCCCCGCCGCAGACAAAAAAGCGGCAG < 1:8593529/34‑1 gAAAAAAAACCCCGCCGCAGACAAAAAAGCGGCAG < 1:1696975/34‑1 gAAAAAAAACCCCGCCGCAGACAAAAAAGCGGCAG < 1:1378270/34‑1 AAAAAAACCCCCGCCGCAGACAAAAAAGCGGCAGC < 1:9787701/35‑1 AAAAAACCCCCGCCGCAGACAAAAAAGCGGCAGCG < 1:1359483/35‑1 AAAAAACCCCCGCCGCAGACAAAAAAGCGGCAGCG < 1:13892608/35‑1 AAAAAAACCCCGCCGCAGACAAAAAAGCGGCAGCG < 1:10900420/35‑1 AAAACCCCCGCCGCAGACAAAAAAGCGGCAGCGGC < 1:11503203/35‑1 AAAAACCCCGCCGCAGACAAAAAAGCGGCAGCGGC < 1:13383065/35‑1 AAACCCCCGCCGCAGACAAAAAAGCGGCAGCGGCA < 1:3844024/35‑1 aaaCCCCGCCGCAGACAAAAAAGCGGCAGCGGCAA < 1:12630599/32‑1 AACCCCCGCCGCAGACAAAAAAGCGGCAGCGGCAA < 1:11144650/35‑1 AACCCCCGCCGCAGACAAAAAAGCGGCAGCGGCAA < 1:2313847/35‑1 AACCCCCGCCGCAGACAAAAAAGCGGCAGCAGCAA < 1:14534837/35‑1 aaCCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAA < 1:6388349/33‑1 ACCCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAA < 1:11491063/35‑1 ACCCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAA < 1:11588932/35‑1 cgCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAA < 1:116035/33‑1 CCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAG < 1:19457405/35‑1 CCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAG < 1:14445539/35‑1 CCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAG < 1:13371087/35‑1 TCAAAAAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/506031‑506020 ‑‑‑‑‑‑‑‑‑‑‑‑CCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAG > REL606/758029‑758061 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |