New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 370493571 (0.690)362 (5.280) 9/32 NT 88.4% intergenic (+1603/+1) yibG/yibH hypothetical protein/hypothetical protein
?REL606 = 3741809 NA (NA)noncoding (157/768 nt) IS1 repeat region

Only 100 of 1428 total aligned reads displayed.

CTCCCCCCTCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3704922‑3704935
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGCCGTAAAACATGGCAACTGCAGTTCACTTAC  <  REL606/3741809‑3741776
              ||||||||                                  
ccCCCCCCTCCCCCCCCCCCCCCTGCCGTAAAACA                       <  1:16562603/33‑1
ccCCCCCCTCCCCCCCCCCCCCCTGCCGTAAAACA                       <  1:11189743/33‑1
 ccgCCCCTCCCCCCCCCCCCCCTGCCGTAAAACAT                      <  1:13091166/32‑1
 cCCCCCCTCCCCCCCCCCCCCCTGCCGTAAAACAT                      <  1:19899725/34‑1
  ccgCCCTCCCCCCCCCCCCCCTGCCGTAAAACATG                     <  1:134482/32‑1
  CCCCCCTCCCCCCCCCCCCCCTGCCGTAAAACATG                     <  1:12496193/35‑1
   gCCCCCCCCCCCCCCCCCCCTGCCGTAAAACATGG                    <  1:16338767/34‑1
   CCCCCCCCCCCCCCCCCCCCTGCCGTAAAACATGG                    <  1:10181136/35‑1
   CCCCCCCCCCCCCCCCCCCCTGCCGTAAAACATGG                    <  1:12290255/35‑1
    gctCTCCCCCCCCCCCCCCTGCCGTAAAACATGGC                   <  1:13269454/32‑1
    gCCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGC                   <  1:10001363/34‑1
    CCCCTCCCCCCCCCCCCCCTGCCGTAAAACATGGC                   <  1:11637148/35‑1
    CCCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGC                   <  1:5023491/35‑1
    CCCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGC                   <  1:8260161/35‑1
     CCCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCA                  <  1:7115115/35‑1
     CCCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCA                  <  1:12726152/35‑1
     CCCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCA                  <  1:4839660/35‑1
     CCCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCA                  <  1:15366799/35‑1
     CCCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCA                  <  1:10996631/35‑1
     CCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGCA                  <  1:6633059/35‑1
     CCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGCA                  <  1:2156964/35‑1
     CCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGCA                  <  1:3464658/35‑1
     CCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGCA                  <  1:13544178/35‑1
     CCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGCA                  <  1:953177/35‑1
      cccCCCCCCCCCCCCCCTGCCGTAAAACATGGCAA                 <  1:20246604/32‑1
      cccCCCCCCCCCCCCCCTGCCGTAAAACATGGCAA                 <  1:10546486/32‑1
      CCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCAA                 <  1:5750491/35‑1
      CCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCAA                 <  1:8488334/35‑1
       ccCCCCCCCCCCCCCCTGCCGTAAAACATGGCAAC                <  1:7309215/33‑1
       ccCCCCCCCCCCCCCCTGCCGTAAAACATGGCAAC                <  1:4658288/33‑1
       ccCCCCCCCCCCCCCCTGCCGTAAAACATGGCAAC                <  1:17656568/33‑1
       ccCCCCCCCCCCCCCCTGCCGTAAAACATGGCAAC                <  1:15839218/33‑1
        ttCCCCCCCCCCCCCTGCCGTAAAACATGGCAACT               <  1:14925773/33‑1
        cCCCCCCCCCCCCCCTGCCGTAAAACATGGCAACT               <  1:4540572/34‑1
        cCCCCCCCCCCCCCCTGCCGTAAAACATGGCAACT               <  1:18251634/34‑1
        cCCCCCCCCCCCCCCTGCCGTAAAACATGGCAACT               <  1:7792014/34‑1
        cCCCCCCCCCCCCCCTGCCGTAAAACATGGAAACT               <  1:16987091/34‑1
        TCCCCCCCCCCCCCCTGCCGTAAAACATGGCAACT               <  1:289379/35‑1
         CCCCCCCCCCCCCCTGCCGTAAAACATGGCAACTG              <  1:9188639/35‑1
         CCCCCCCCCCCCCCTGCCGTAAAACATGGCAACTG              <  1:16768607/35‑1
         CCCCCCCCCCCCCCTGCCGTAAAACATGGCAACTG              <  1:4238951/35‑1
         CCCCCCCCCCCCCCTGCCGTAAAACATGGCAACTG              <  1:19801274/35‑1
         CCCCCCCCCCCCCCTGCCGTAAAACATGGCAACTG              <  1:3356437/35‑1
         CCCCCCCCCCCCCCTGCCGTAAAACATGGCAACTG              <  1:3047848/35‑1
          tCCCCCCCCGCCCTGCCGTAAAACATGGCAACTGC             <  1:2009064/34‑1
          tCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC             <  1:14500874/34‑1
          CCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC             <  1:2045847/35‑1
          CCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC             <  1:5495623/35‑1
          CCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC             <  1:1912960/35‑1
          CCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC             <  1:13953747/35‑1
          CCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC             <  1:4299801/35‑1
          CCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC             <  1:9355949/35‑1
           CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA            <  1:267106/35‑1
           CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA            <  1:3568619/35‑1
           CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA            <  1:3671991/35‑1
           CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA            <  1:12193846/35‑1
           CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA            <  1:10798583/35‑1
           CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA            <  1:6543043/35‑1
           CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA            <  1:15479819/35‑1
           CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA            <  1:6337117/35‑1
           CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA            <  1:6163083/35‑1
           CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA            <  1:1938383/35‑1
            CCCCCCCCCCCTGCCGTAAAACATGGCAACTGCAG           <  1:10650638/35‑1
            CCCCCCCCCCCTGCCGTAAAACATGGAAACTGCAG           <  1:18099281/35‑1
             CCCCCCCCCCTGCCGTAAAACATGGCAACTGCAGT          <  1:3217206/35‑1
             CCCCCCCCCCTGCCGTAAAACATGGCAACTGCAGT          <  1:8000402/35‑1
             CCCCCCCCCCTGCCGTAAAACATGGCAACTGCAGT          <  1:4072154/35‑1
             CCCCCCCCCCTGCCGTAAAACATGGCAACTGCAGT          <  1:15679881/35‑1
             CCCCCCCCCCTGCCGTAAAACATGGCAACTGCAGT          <  1:8986124/35‑1
              CCCCCCCCCTGCCGTAAAACATGGCAACTGCAGTT         <  1:18735877/35‑1
              CCCCCCCCCTGCCGTAAAACATGGCAACTGCAGTT         <  1:16008297/35‑1
              CCCCCCCCCTGCCGTAAAACATGGCAACTGCAGTT         <  1:6959430/35‑1
              CCCCCCCCCTGCCGTAAAACATGGCAACTGCAGTT         <  1:14128340/35‑1
               CCCCCCCCTGCCGTAAAACATGGCAACTGCAGTTC        <  1:5151348/35‑1
               CCCCCCCCTGCCGTAAAACATGGCAACTGCAGTTC        <  1:19665904/35‑1
               CCCCCCCCTGCCGTAAAACATGGCAACTGCAGTTC        <  1:18959362/35‑1
               CCCCCCCCTGCCGTAAAACATGGCAACTGCAGTTC        <  1:1140522/35‑1
               CCCCCCCCTGCCGTAAAACATGGAAACTGCAGTTC        <  1:16200511/35‑1
               CCCCCCCCTGCCGTAAAAAATGGCAACTGCAGTTC        <  1:6795767/35‑1
                CCCCCCCTGCCGTAAAACATGGCAACTGCAGTTCA       <  1:8721943/35‑1
                CCCCCCCTGCCGTAAAACATGGCAACTGCAGTTCA       <  1:12882306/35‑1
                CCCCCCCTGCCGTAAAACATGGAAACTGCAGTTCA       <  1:14285429/35‑1
                 CCCCCCTGCCGTAAAACATGGCAACTGCAGTTCAC      <  1:14694550/35‑1
                  CCCCCTGCCGTAAAACATGGCAACTGCAGTTCACT     <  1:3896382/35‑1
                  CCCCCTGCCGTAAAACATGGCAACTGCAGTTCACT     <  1:2296792/35‑1
                  CCCCCTGCCGTAAAACATGGCAACTGCAGTTCACT     <  1:5959274/35‑1
                  CCCCCTGCCGTAAAACATGGCAACTGCAGTTCACT     <  1:13815919/35‑1
                   CCCCTGCCGTAAAACATGGCAACTGCAGTTCACTT    <  1:9684651/35‑1
                   CCCCTGCCGTAAAACATGGCAACTGCAGTTCACTT    <  1:7553959/35‑1
                   CCCCTGCCGTAAAACATGGCAACTGCAGTTCACTT    <  1:15151505/35‑1
                   CCCCTGCCGTAAAACATGGCAACTGCAGTTCACTT    <  1:18475860/35‑1
                    CCCTGCCGTAGAACATGGCAACTGCAGTTCACTTA   <  1:17251822/35‑1
                    CCCTGCCGTAAAACATGGCAACTGCAGTTCACTTA   <  1:8140645/35‑1
                    CCCTGCCGTAAAACATGGCAACTGCAGTTCACTTA   <  1:11988707/35‑1
                    CCCTGCCGTAAAACATGGCAACTGCAGTTCACTTA   <  1:5317748/35‑1
                    CCCTGCCGTAAAACATGGCAACTGCAGTTCACTTA   <  1:983237/35‑1
                     CCTGCCGTAAAACATGGCAACTGCAGTTCACTTAC  <  1:17482300/35‑1
                     CCTGCCGTAAAACATGGCAACTGCAGTTCACTTAC  <  1:17897707/35‑1
                     CCTGCCGTAAAACATGGCAACTGCAGTTCACTTAC  <  1:11845708/35‑1
                     CCTGCCGTAAAACATGGCAACTGCAGTTCACTTAC  <  1:10361655/35‑1
              ||||||||                                  
CTCCCCCCTCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3704922‑3704935
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGCCGTAAAACATGGCAACTGCAGTTCACTTAC  <  REL606/3741809‑3741776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.