New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1036060 = | 100 (0.970) | 19 (0.190) | 7/46 | NT | 20.0% | intergenic (+32/+44) | ycbG/ompA | hypothetical protein/outer membrane protein A (3a;II*;G;d) |
? | REL606 | 3483139 = | 59 (0.570) | coding (1455/2706 nt) | malT | transcriptional regulator MalT |
GCTGCGGGGTTTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1036076‑1036060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA > REL606/3483139‑3483172 | gccGCGGGGTTTTTTTTTTAGCCGCATTGTGGCAA < 1:9598511/32‑1 ccgGCGGGGTTTTTTTTTTAGCCGCATTGTGGCAA < 1:5371146/32‑1 cccGCGGGGTTTTTTTTTTAGCCGCATTGTGGCAA < 1:13519580/32‑1 cGCGGGGTTTTTTTTTTAGCCGCATTGTGGCAACC < 1:8441329/34‑1 GCGGGGATTTTTTTTTAGCCGCATTGTGGCAACCT < 1:7984060/35‑1 CGGTGTTTTTTTTTTAGCCGCATTGTGGCAACCTC < 1:20589806/35‑1 CGGGGTTTTTTTTTTAGCCGCATTGTGGCAACCTC < 1:5047690/35‑1 cGGGTTTTTTTTTTAGCCGCATTGTGGCAACCTCG < 1:5120000/34‑1 cGGGGTTTTTTTTTAGCCGCATTGTGGCAACCTCG < 1:11579557/34‑1 GGGTTTTTTTTTTTAGCCGCATTGTGGCAACCTCG < 1:13993658/35‑1 GGGGTTTTTTTTTTAGCCGCATTGTGGCAACCTCG < 1:6126377/35‑1 GGGTTTTTTTTTTAGCCGCATTGTGGCAACCTCGG < 1:18354127/35‑1 ttTTTTTTTTTTAGCCGCATTGTGGCAACCTCGGT < 1:19542539/33‑1 cGTTGTTTTTTTAGCCGCATTGTGGCAACCTCGGT < 1:13624980/34‑1 GGTTTTTTTTTTAGCCGCATTGTGGCAACCTCGGT < 1:15610536/35‑1 GGTTGTTTTTTTAGCCGCATTGTGGCAACCTCGGT < 1:9473417/35‑1 GGTTGTTTTTTTAGCCGCATTGTGGCAACCTCGGT < 1:2560320/35‑1 GTTTTTTTTTTAGCCGCATTGTGGCAACCTCGGTG < 1:2638718/35‑1 tgTTTTTTTAGCCGCATTGTGGCAACCTCGGTGCT < 1:1210775/33‑1 TTTTTTTTAGCCGCATTGTGGCAACCTCGGTGCTG < 1:1538629/35‑1 TTTTTTTAGCCGCATTGTGGCAACCTCGGTGCTGG < 1:12993922/35‑1 TTTTTTAGCCGCATTGTGGCAACCTCGGTGCTGGG < 1:15034236/35‑1 TTTTTAGCCGCATTGTGGCAACCTCGGTGCTGGGT < 1:17952083/35‑1 TTTTAGCCGCATTGTGGCAACCTCGGTGCTGGGTG < 1:14042026/35‑1 TTTTAGCCGCATTGTGGCAACCTCGGTGCTGGGTG < 1:19654103/35‑1 TTTTAGCCGCATTGTGGCAACCTCGGTGCTGGGTG < 1:17089994/35‑1 TTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA < 1:3623770/35‑1 TTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA < 1:3180709/35‑1 TTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA < 1:2839559/35‑1 TTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA < 1:13360541/35‑1 TTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA < 1:759604/35‑1 | GCTGCGGGGTTTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1036076‑1036060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA > REL606/3483139‑3483172 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |