New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1590579 = | 43 (0.420) | 11 (0.140) | 3/38 | NT | 20.2% | intergenic (+294/+147) | ydeE/ydeH | predicted transporter/hypothetical protein |
? | REL606 | = 3487475 | 53 (0.650) | coding (608/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
TACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAA > REL606/1590545‑1590612 | acttcaaccgcatgattgagcagatcgaaaaagtg > 1:6410432‑M1/35‑35 (MQ=255) acttcaaccgcatgattgagcagatcgaaaaagtg < 1:20521425‑M1/1‑1 (MQ=255) acttcaaccgcatgattgagcagatcgaaaaagtg < 1:20612514‑M1/1‑1 (MQ=255) cttcaaccgcatgattgagcagatcgaaaaagtgg < 1:19016883‑M1/2‑1 (MQ=255) aCAGTTGTGTACAAGGGGCCTGATTTTTATTACgg > 1:12502424/1‑35 (MQ=255) aCAGTTGTGTACAAGGGGCCTGATTTTTATGACgg > 1:2174466/1‑35 (MQ=255) aCAGTTGTGTACAAGGGGCCTGATTTTTATGACgg > 1:11066439/1‑35 (MQ=255) aCAGTTGTGTACAAGGGGCCTGATTTTTATGACgg < 1:6419705/35‑1 (MQ=255) ttcaaccgcatgattgagcagatcgaaaaagtGGc > 1:10616647‑M1/33‑35 (MQ=255) ttcaaccgcatgattgagcagatcgaaaaagtGGc < 1:10278498‑M1/3‑1 (MQ=255) ttcaaccgcatgattgagcagatcgaaaaagtGGc > 1:12327083‑M1/33‑35 (MQ=255) cAGTTGTGTACAAGGGGCCTGATTTTTATGACGGc < 1:2256361/35‑1 (MQ=255) cAGTTGTGTACAAGGGGCCTGATTTTTATGACGGc < 1:17406571/35‑1 (MQ=255) tcaaccgcatgattgagcagatcgaaaaagtGGCg > 1:4239889‑M1/32‑35 (MQ=255) tcaaccgcatgattgagcagatcgaaaaagtGGCg > 1:19985045‑M1/32‑35 (MQ=255) tcaaccgcatgattgagcagatcgaaaaagtGGCg > 1:6572698‑M1/32‑35 (MQ=255) aGTTGTGTACAAGGGGCCTGATTTTTATGACGGCg < 1:4381530/35‑1 (MQ=255) gTTGTGTACAAGGGGCCTGATTTTTATGACGGCGa > 1:15113084/1‑35 (MQ=255) gTTGTGTACAAGGGGCCTGATTTTTATGACGGCGa < 1:10082194/35‑1 (MQ=255) gTTGTGTACAAGGGGCCTGATTTTTATGACGGCGa < 1:20173026/35‑1 (MQ=255) gTTGTGTACAAGGGGCCTGATTTTTATGACGGCGa > 1:910892/1‑35 (MQ=255) caaccgcatgattgagcagatcgaaaaagtGGCGa < 1:10459502‑M1/5‑1 (MQ=255) caaccgcatgattgagcagatcgaaaaagtGGCGa > 1:13062326‑M1/31‑35 (MQ=255) caaccgcatgattgagcagatcgaaaaagtGGCGa < 1:9537884‑M1/5‑1 (MQ=255) ttGTGTACAAGGGGCCTGATTTTTATGACGGCGaa < 1:9580572/35‑1 (MQ=255) ttGTGTACAAGGGGCCTGATTTTTATGACGGCGaa > 1:14424319/1‑35 (MQ=255) ttGTGTACAAGGGGCCTGATTTTTATGACGGCGaa < 1:3379516/35‑1 (MQ=255) ttGTGTACAAGGGGCATGATTTTTATGACGGCGaa < 1:19964684/35‑1 (MQ=255) aaccgcattattgagcagatcgaaaaagtGGCGaa < 1:13152973‑M1/6‑1 (MQ=255) aaccgcatgattgagcagatcgaaaaagtGGCGaa < 1:11538492‑M1/6‑1 (MQ=255) aaccgcatgattgagcagatcgaaaaagtGGCGaa < 1:18750840‑M1/6‑1 (MQ=255) aaccgcatgattgagcagatcgaaaaagtGGCGaa < 1:17631285‑M1/6‑1 (MQ=255) accgcatgattgagcagatcgaaaaagtGGCgaac < 1:12537832‑M1/7‑2 (MQ=255) accgcatgattgagcagatcgaaaaagtGGCGaaa < 1:16137520‑M1/7‑1 (MQ=255) gtgtACAAGGGGCCTGATTTTTATGACGGCGaaca > 1:11390366/1‑33 (MQ=255) gtgtACAAGGGGCCTGATTTTTATGACGGCGaaaa > 1:13291639/1‑35 (MQ=255) tgtACAAGGGGCCTGATTTTTATGACGGCGaaaaa > 1:17658423/1‑35 (MQ=255) tgtACAAGGGGCCTGATTTTTATGACGGCGaaaaa > 1:13925576/1‑35 (MQ=255) tgtACAAGGGGCCTGATTTTTATGACGGCGaaaaa < 1:130391/35‑1 (MQ=255) tgtACAAGGGGCCTGATTTTTATGACGGCGaaaaa > 1:12413054/1‑35 (MQ=255) cgcatgattgagcagatcgaaaaagtGgcgaacaa < 1:7585344‑M1/9‑4 (MQ=255) gtACAAGGGGCCTGATTTTTATGACGGCGaaaaaa > 1:16101079/1‑35 (MQ=255) gtACAAGGGGCCTGATTTTTATGACGGCGaaaaaa > 1:1208261/1‑35 (MQ=255) gtACAAGGGGCCTGATTTTTATGACGGCGaaaaaa > 1:16961024/1‑35 (MQ=255) gcatgattgagcagatcgaaaaagtGGCGaacaaa < 1:14658524‑M1/10‑1 (MQ=255) gcatgattgagcagatcgaaaaagtGGCGaacaaa < 1:10020831‑M1/10‑1 (MQ=255) gcatgattgagcagatcgaaaaagtGGCGaaaaaa < 1:5027353‑M1/10‑1 (MQ=255) gcatgattgagcagatcgaaaaagtGGCGaaaaaa < 1:8572953‑M1/10‑1 (MQ=255) tACAAGGGGCCTGATTTTTATGACGGGGaaaaaaa > 1:18113005/1‑35 (MQ=255) catgattgagcagatcgaaaaagtGGCGataaaaa < 1:18850492‑M1/11‑1 (MQ=255) catgattgagcagatcgaaaaagtGGCGaacaaaa < 1:15339911‑M1/11‑1 (MQ=255) catgattgagcagatcgaaaaagtGGCGaaaaaaa < 1:13633383‑M1/11‑1 (MQ=255) aCAAGGGGCCTGATTTTTATGACGGGGaaaaaaaa < 1:1161782/35‑1 (MQ=255) aCAAGGGGCCTGATTTTTATGACGGCGaaaaaaaa > 1:3993371/1‑35 (MQ=255) aCAAGGGGCCTGATTTTTATGACGGCGaaaaaaaa > 1:13826705/1‑35 (MQ=255) aCAAGGGGCCTGATTTTTATGACGGCGaaaaaaaa < 1:11649722/35‑1 (MQ=255) tgattgagcagatcgaaaaagtGgcgaaaaaatac < 1:17610558‑M1/13‑4 (MQ=255) tgattgagcagatcgaaaaagtGGCTAAAAAAAAc < 1:16179311‑M1/13‑1 (MQ=255) tgattgagcagatcgaaaaagtGGCGAACAAAAAc < 1:13906628‑M1/13‑1 (MQ=255) cAAGGGGCCTGATTTTTATGACGGCGAAAAAAAAc < 1:19645974/35‑1 (MQ=255) cAAGGGGCCTGATTTTTATGACGGCGAAAAAAAAc > 1:10935747/1‑35 (MQ=255) cAAGGGGCCTGATTTTTATGACGGCGAAAAAAAAc < 1:18599181/35‑1 (MQ=255) cAAGGGGCCTGATTTTTATGACGGCGAAAAAAAAc < 1:12560400/35‑1 (MQ=255) cAAGGGGCCTGATTTTTATGACGGCGAAAAAAAAc < 1:12676285/35‑1 (MQ=255) gattgagcagatcgaaaaagtGgcgaaaaaaaccc < 1:11442122‑M1/14‑4 (MQ=255) aaGGGGCCTGATTTTTATGACGGCGAAAAAAAAcc < 1:449338/35‑1 (MQ=255) attgagcagatcgaaaaagtGGCGAACAAAAaccc < 1:2894254‑M1/15‑2 (MQ=255) aGGGGCCTGATTTTTATGACGGCGAAAAAAAATCg > 1:5399162/1‑35 (MQ=255) aGGGGCCTGATTTTTATGACGGCGAAAAAAAACCg < 1:5934731/35‑1 (MQ=255) ttgagcagatcgaaaaagtGGCGAAAAAACACCGc < 1:8406154‑M1/16‑1 (MQ=255) ggggCCTGATTTTTATGACGGCGAAAAAAAACCGc > 1:19401886/1‑35 (MQ=255) tgagcagatcgaaaaagtGGCGAACAAAAACCgcg < 1:5325702‑M1/17‑2 (MQ=255) tgagcagatcgaaaaagtGGCGAAAAAaaaccccc < 1:5680333‑M1/17‑4 (MQ=255) tgagcagatcgaaaaagtGGCGAAAAAaaaccacg < 1:11552360‑M1/17‑4 (MQ=255) gggCCTGATTTTTATGACGGCGAAAAAAAACCGcc > 1:7315677/1‑35 (MQ=255) gggCCTGATTTTTAAGACGGCGAAAAAAAACCGcc > 1:19877848/1‑35 (MQ=255) gCCTGATTTTTATGACGGCGAAAAAAAACCGCCAg > 1:14618849/1‑35 (MQ=255) gCCTGATTTTTATGACGGCGAAAAAAAACCGCCAg > 1:13468928/1‑35 (MQ=255) gCCTGATTTTTATGACGGCGAAAAAAAACCGCCAg > 1:765718/1‑35 (MQ=255) ccTGATTTTTATGACGGCGAAAAAAAACCGCCAGt > 1:5752957/1‑35 (MQ=255) gATTTTTATGACGGCGAAAAAAAACCGCCAGTaaa > 1:6503297/1‑35 (MQ=255) aTTTTTATGACGGCGAAAAAAAACCGCCAGTAAAc > 1:8446364/1‑35 (MQ=255) aTTTTTATGACGGCGAAAAAAAACCGCCAGTAAAc > 1:8046353/1‑35 (MQ=255) tttttATGACTGCGAAAAAAAACCGCCAGTAAAcc > 1:2806770/1‑35 (MQ=255) tttttATGACGGCGAAAAAAAACCGCCAGTAAAcc > 1:15419529/1‑35 (MQ=255) tttttATGACGGCGAAAAAAAACCGCCAGTAAAcc > 1:1535881/1‑35 (MQ=255) ttttATGACGGCGAAAAAAAACCGCCAGTAAACcg > 1:1504142/1‑35 (MQ=255) tttATGACGGCGAAAAAAAACCGCCAGTAAACcgg > 1:6020278/1‑35 (MQ=255) ttATGACGGCGAAAAAAAACCGCCAGTAAACcggc > 1:18992652/1‑35 (MQ=255) tATGACGGCGAAAAAAAACCGCCAGTAAACcggct > 1:15354857/1‑34 (MQ=255) aTGACGGCGAAAAAAAACCGCCAGTAAACcggctg > 1:7358076/1‑33 (MQ=255) aTGACGGCGAAAAAAAACCGCCAGTAAACcggcgg > 1:18634497/1‑35 (MQ=255) aTGACGGCGAAAAAAAACCGCCAGTAAACcggcgg > 1:18858119/1‑35 (MQ=255) aTGACGGCGAAAAAAAACCGCCAGTAAACcggcgg > 1:9774007/1‑35 (MQ=255) gACGGCGAAAAAAAACCGCCAGTAAACcggcgggg > 1:11607784/1‑33 (MQ=255) gACGGCGAAAAAAAACCGCCAGTAAACcggcgggg > 1:11027842/1‑33 (MQ=255) aCGGCGAAAAAAAACCGCCAGTAAACcggcggggg > 1:4835745/1‑32 (MQ=255) cGGCGAAAAAAAACCGCCAGTAAACCTGCGGTGaa > 1:7863497/1‑35 (MQ=255) | TACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAA > REL606/1590545‑1590612 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |