New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 188990587 (0.850)12 (0.130) 5/42 NT 17.4% coding (1053/1374 nt) yebQ predicted transporter
?REL606 2379272 = 38 (0.420)coding (970/1014 nt) usg hypothetical protein

Only 100 of 166 total aligned reads displayed.

GGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATA  >  REL606/1889871‑1889939
                                   |                                  
ggTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTG                                    <  1:3070340‑M1/35‑1 (MQ=255)
 gttgttCATCATGGCTGGGGGGGTTTTTTTCCCTg                                    >  1:15862005/1‑35 (MQ=19)
  ttgttCATCATGGCTGCGGGGCTTTTTTCCCTGGt                                  <  1:6434714/35‑1 (MQ=255)
   tgttCATCATGGCTGCGGGGCTTTTTTCCCTGGtt                                 <  1:5714139/35‑1 (MQ=255)
    gttCATCATGGCTGCGGGGCTTTTTTCCCTGGTTc                                <  1:12715300/35‑1 (MQ=255)
     ttCATCATGGCTGCGGGGCTTTTTTTCCTGGTTcc                               >  1:13460193/1‑34 (MQ=255)
     ttCATCATGGCTGCGGGGCTTTTTTCCCTGGTTct                               <  1:3377282/35‑1 (MQ=255)
      tcatcaTGGCTGCGGGGCTTTTTTCCCTGGTTctg                              <  1:8068421/35‑1 (MQ=255)
      tcatcaTGGCTGCGGGGCTTTTTTCCCTGGTTctg                              <  1:19473033/35‑1 (MQ=255)
       catcatGGCTGAGGGGCTTTTTTCCCTGGTTctgc                             <  1:14832979/35‑1 (MQ=255)
        atcatGGCTGCGGGGCTTTTTTCCCTGGTTctgct                            <  1:9257443/35‑1 (MQ=255)
        atcatGGCTGCGGGGCTTTTTTCCCTGGTTctgct                            <  1:6456616/35‑1 (MQ=255)
        atcatGCTGCGGGGCTTTTTTCCCTGGTTctgctg                           >  1:4319062/1‑35 (MQ=37)
         tcatGGCTGCGGGGCTTTTTTCCCTGGTTctgctg                           <  1:10076882/35‑1 (MQ=255)
         tcatGGCTGCGGGGCTTTTTTCCCTGGTTctgctg                           <  1:15358525/35‑1 (MQ=255)
         tcatGGCTGCGGGGCTTTTTTCACTGGTTctgctg                           <  1:143185/35‑1 (MQ=255)
          catGGCTGCGGGGCTTTTTTCCCTGGTTCtgctgc                          <  1:3417247/35‑1 (MQ=255)
           atGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGcc                         <  1:494486/35‑1 (MQ=255)
           atGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGcc                         <  1:10061502/35‑1 (MQ=255)
            tGGCTGCGTGGCTTTTTTCCCTGGTTCTGCTGccc                        <  1:14682537/35‑1 (MQ=255)
            tGGCTGCGGGGCTTTTTTCCCTGGGTCTGCTGccc                        >  1:14654822/1‑35 (MQ=255)
             ggCTGCGGGGCTTTTTTGCCTGGTTCTGCTGCCcg                       <  1:12684795/35‑1 (MQ=255)
             ggCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCcg                       <  1:18288725/35‑1 (MQ=255)
             ggCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCcg                       >  1:16250041/1‑35 (MQ=255)
             ggCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCcg                       <  1:6205193/35‑1 (MQ=255)
              gCTGCGGGGCTTTTTTCCCTGGTTCTGCTGGCcgc                      <  1:13174008/35‑1 (MQ=255)
              gCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCcgc                      <  1:11179178/35‑1 (MQ=255)
               cTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCcgcg                     >  1:12802473/1‑35 (MQ=255)
               cTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCcgcg                     <  1:5272245/35‑1 (MQ=255)
               cTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCcgcg                     >  1:3542432/1‑35 (MQ=255)
                  gCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTc                   <  1:18128792/35‑1 (MQ=255)
                  gCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTc                   >  1:17776830/1‑35 (MQ=255)
                  gCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTc                   <  1:17245119/35‑1 (MQ=255)
                  gCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTc                   <  1:16216384/35‑1 (MQ=255)
                   cGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCa                  >  1:4592889/1‑35 (MQ=255)
                   cGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCa                  >  1:7844174/1‑35 (MQ=255)
                   cGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCa                  >  1:15966380/1‑35 (MQ=255)
                   cGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCa                  <  1:20574069/35‑1 (MQ=255)
                     gggCTTTTTTCCATGGTTCTGCTGCCCGCGTCAcc                <  1:15320425/35‑1 (MQ=255)
                      gggttttttcccTGccatcagcgcgccgccaaagc               <  1:8997447‑M1/32‑22 (MQ=255)
                      ggCTTTTTTCCCTGccatcagcgcgccgccaaagc               <  1:5650751‑M1/35‑22 (MQ=255)
                      ggCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCt               <  1:11479158/35‑1 (MQ=255)
                      ggCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCt               >  1:10383211/1‑35 (MQ=255)
                      ggCTTTTTTCCCTGGTTCTGATGCCCGCGTCACCt               <  1:13799402/35‑1 (MQ=255)
                       gCTTTTTTCCCTGccatcagcgcgccgccaaagcg              <  1:1300602‑M1/35‑23 (MQ=255)
                       gCTTTTTTCCCTGccatcagcgcgcagccaaagcg              <  1:13900200‑M1/35‑23 (MQ=255)
                       gCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTg              <  1:19159411/35‑1 (MQ=255)
                       gCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTg              <  1:3897350/35‑1 (MQ=255)
                        cTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGc             >  1:8177749/1‑35 (MQ=255)
                        cTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGc             <  1:10641186/35‑1 (MQ=255)
                        cTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGc             <  1:18663470/35‑1 (MQ=255)
                        cTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGc             >  1:8484662/1‑35 (MQ=255)
                         ttttttTCCTGccatcagcgcgccgccaaagcgaa            <  1:4676770‑M1/35‑25 (MQ=255)
                         ttttttCCCTGGTTCTGCTGCCCGCGTCACCTGCg            >  1:19220583/1‑35 (MQ=255)
                         ttttttCCCTGGTTCTGCTGCCCGCGTCACCTGCg            <  1:16048139/35‑1 (MQ=255)
                          tttttCCCTGccatcagcgcgccgccaaagcgaac           <  1:7328979‑M1/35‑26 (MQ=255)
                          tttttCCCTGGTTCTGCTGCCCGCGTCACCTGCgg           <  1:15040330/35‑1 (MQ=255)
                          tttttCCCTGGTTCTGCTGCCCGCGTCACCTGCgg           <  1:15896960/35‑1 (MQ=255)
                          tttttCCCTGGTTCTGCTGCCCGCGTCACCTGCgg           <  1:5119243/35‑1 (MQ=255)
                          tttttCCCTGGTTCTGCTGCCCGCGTCACCTGCgg           >  1:13973805/1‑35 (MQ=255)
                           ttttCCCTGccatcagcgcgccgccaaagcgaacg          <  1:16873137‑M1/35‑27 (MQ=255)
                           ttttCCCTGccatcagcgcgccgccaaagcgaacg          <  1:15476900‑M1/35‑27 (MQ=255)
                           ttttCCCTGGTTCTGCTGCCCGCGTCACCTGCGGa          >  1:16541303/1‑35 (MQ=255)
                           ttttCCCTGGTTCTGCTGCCCGCGTCACCTGCGGa          >  1:5043743/1‑35 (MQ=255)
                            tttCCCTGccatcagcgcgccgccaaagcgaacgt         <  1:7138812‑M1/35‑28 (MQ=255)
                            tttCCCTGGTTCTGCTGCCCGCGTCACCTGCGGat         >  1:10123895/1‑35 (MQ=255)
                             ttCCCTGccatcagcgcgccgccaaagcgaacgtt        <  1:9634183‑M1/35‑29 (MQ=255)
                             ttCCCTGGTTCTGCTGCCCGCGTCACCTGCGGata        >  1:17142009/1‑35 (MQ=255)
                             ttCCCTGGTTCTGCTGCCCGCGTCACCTGCGGata        >  1:15513274/1‑35 (MQ=255)
                             ttCCATGGTTCTGCTGCCCGCGTCACCTGCGGata        <  1:5750797/35‑1 (MQ=255)
                              tCCCTGGTTCTGCTGCCCGCGTCACCTGCGGatat       >  1:18954918/1‑35 (MQ=255)
                              tCCCTGGTTCTGCTGCCCGCGTCACCTGCGGatat       >  1:17626316/1‑35 (MQ=255)
                              accctGccatcagcgcgccgccaaagcgaacgtta       <  1:11081078‑M1/34‑30 (MQ=255)
                               cccTGGTTCTGCTGCCCGCGTCACCTGCGGATATc      <  1:19687354/35‑1 (MQ=255)
                               cccTGGTTCTCCTGCCCGCGTCACCTGCGGATATc      <  1:15809066/35‑1 (MQ=255)
                                ccTGccatcagcgcgccgccaaagcgaacgttatc     <  1:11349244‑M1/35‑32 (MQ=255)
                                ccTGccatcagcgcgccgccaaagcgaacgttatc     <  1:8993298‑M1/35‑32 (MQ=255)
                                ccTGGTTCTGCTGCCCGCGTCCCCTGCGGATATCa     >  1:20303227/1‑35 (MQ=255)
                                ccTGGTTCTGCTGCCCGCGTCACCTGCGGATATCa     >  1:2352960/1‑35 (MQ=255)
                                ccTGGTTCTGCTGCCCGCGTCACCTGCGGATATCa     <  1:5448801/35‑1 (MQ=255)
                                ccTGGTTCTGCTGCCCGCGTCACCTGCGGATATCa     >  1:9934511/1‑35 (MQ=255)
                                 cTGccatcagcgcgccgccaaagcgaacgttatcg    >  1:14095834‑M1/1‑3 (MQ=255)
                                 cTGccatcagcgcgccgccaaagcgaacgttatcg    <  1:3037976‑M1/35‑33 (MQ=255)
                                 cTGGTTCTGCTGCCCGCTTCACCTGCGGATATCaa    >  1:5751869/1‑35 (MQ=255)
                                 cTGGTTCTGCTGCCCGCGTCACCTGCGGATATCaa    >  1:13927928/1‑35 (MQ=255)
                                 cTGGTTCTGCTGCCCGCGTCACCTGCGGATATCaa    <  1:9626914/35‑1 (MQ=255)
                                 cTGGTTCTGCTGCCCGCGTCACCTGCGGATATCaa    >  1:10551677/1‑35 (MQ=255)
                                 cTGGTTCTGCTGCCCGCGTCACCTGCGGATATCaa    <  1:10820846/35‑1 (MQ=255)
                                  tGccatcagcgcgccgccaaagcgaacgttatcgg   >  1:3229861‑M1/1‑2 (MQ=255)
                                  tGccatcagcgcgccgccaaagcgaacgttatcgg   <  1:18630399‑M1/35‑34 (MQ=255)
                                  tGccatcagcgcgccgccaaagcgaacgttatcgg   <  1:15609270‑M1/35‑34 (MQ=255)
                                  tGccaccagcgcgccgccaaagcgaacgttatcgg   <  1:20603326‑M1/35‑34 (MQ=255)
                                  tGGTTCTGCTGCCCGCGTCACCTGCGGATATCAat   <  1:6937131/35‑1 (MQ=255)
                                  tGGTTCTGCTGCCCGCGTCACCTGCGGATATCAat   >  1:17451997/1‑35 (MQ=255)
                                   ggTTCTGCTGCCCGCGTCACCTGCGGATATCAata  <  1:19890464/35‑1 (MQ=255)
                                   ggTTCTGCTGCCCGCGTCACCTGCGGATATCAata  <  1:10141132/35‑1 (MQ=255)
                                   ggTTCTGCTGCCCGCGTCACCTGCGGATATCAata  <  1:18445671/35‑1 (MQ=255)
                                   ggTTCTGCTGCCCGCGTCACCTGCGGATATCAata  >  1:11112545/1‑35 (MQ=255)
                                   ggTTCTGCTGCCCGCGTCACCTGCGGATATAAata  <  1:3776483/35‑1 (MQ=255)
                                   gccatcagcgcgccgccaaagcgaacgttatcggc  >  1:11999660‑M1/1‑1 (MQ=255)
                                   |                                  
GGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTGGTTCTGCTGCCCGCGTCACCTGCGGATATCAATA  >  REL606/1889871‑1889939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.