New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 296632071 (0.690)9 (0.120) 3/36 NT 10.0% coding (1067/1992 nt) tktA transketolase 1, thiamin‑binding
?REL606 3882316 = 109 (1.410)coding (102/816 nt) atpB F0F1 ATP synthase subunit A

Only 100 of 423 total aligned reads displayed.

TGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTACGCA  >  REL606/3882282‑3882350
                                  |                                  
tcaagtacatcgtaacggaaggtggtGTGGCTggg                                    >  1:18230103‑M2/27‑35 (MQ=255)
tactggccggtgctgctgggcgcggggtggctggg                                    >  1:10257085‑M2/34‑35 (MQ=255)
gcttcgatagcattctgagacgctttacggctggg                                    >  1:892599‑M2/35‑35 (MQ=255)
gcttcgatagcattctgagacgctttacggctggg                                    >  1:17732445‑M2/35‑35 (MQ=255)
ctttctatgctgccgaacgccccagcatggctggg                                    >  1:19209049‑M2/34‑35 (MQ=255)
cgcactcagctcaaaagcctcggtttgtggttggg                                    >  1:8377829‑M2/34‑35 (MQ=255)
aatgcgcgtttgcgcgcgatgaatcttcggctggg                                    >  1:19076644‑M2/34‑35 (MQ=255)
aatgcgcgtttgcgcgcgatgaatcttcggatggg                                    >  1:15140634‑M2/34‑35 (MQ=255)
 tttctatgctgccgaacgccccagcatggctgggg                                   >  1:3615120‑M2/33‑35 (MQ=255)
 tcatcggtatgatcggctttggcctgtggctgggg                                   >  1:594318‑M2/33‑35 (MQ=255)
 ggAGTCAATATTGATTGTCCAGAAGGTGGCTgggg                                   >  1:14582167/1‑35 (MQ=255)
 aaggcagtttgaagttgcacgccaaatggctgggg                                   >  1:7053938‑M2/33‑35 (MQ=255)
  ttcgatagcattctgagacgctttacggctggggg                                  >  1:18972715‑M2/33‑35 (MQ=255)
  tgcgcgtttgcgcgcgatgaatcttcggctggggg                                  >  1:6707010‑M2/32‑35 (MQ=255)
  aggcagtttgaagttgcacgccaaatggctggggg                                  >  1:1597008‑M2/32‑35 (MQ=255)
   tggccggtgctgctgggcgcggagtggctgggggg                                 >  1:14259775‑M2/31‑35 (MQ=255)
   tcgatagcattctgagacgctttacggctgggggg                                 >  1:521170‑M2/32‑35 (MQ=255)
   gcgcgtttgcgcgcgatgaatcttcggctgggggg                                 >  1:3342057‑M2/31‑35 (MQ=255)
   aGTCAATATTGATTGTCCAGAAGGTGGCTgggggg                                 <  1:11142192/35‑1 (MQ=255)
    gcagtttgaagttgcacgccaaatggctggggggg                                >  1:9435547‑M2/30‑34 (MQ=255)
    ctatgctgccgaacgccccagcatggctgGGGGGt                                >  1:1728966‑M2/30‑35 (MQ=255)
    cgcggcgtttctccggtatcggtggggggggggtg                                >  1:1680822‑M2/29‑33 (MQ=255)
    cgcggcgtttctccggtatcggtgggggggggggg                                >  1:15295098‑M2/29‑34 (MQ=255)
    cgcggcgtttctccggtatcggtgggggGGGGGGt                                >  1:16468133‑M2/29‑35 (MQ=255)
    cgatagcattctgagacgctttacggctggggggg                                >  1:12739939‑M2/31‑34 (MQ=255)
    cgatagcattctgagacgctttacggctggGGGGt                                >  1:1328991‑M2/31‑35 (MQ=255)
     ttatttagcctggccctgatgctggctgggggggg                               >  1:6914071‑M2/29‑33 (MQ=255)
     ttatttagcctggccctgatgctggctgggggggg                               >  1:10562893‑M2/29‑33 (MQ=255)
     tatgctgccgaacgccccagcatggctgGGGGTtt                               >  1:18111616‑M2/29‑35 (MQ=255)
     gcgtttgcgcgtgatgaatcttcggctgGGGGGtt                               >  1:19934631‑M2/29‑35 (MQ=255)
     gcgtttgcgcgcgatgaatcttcggctgGGGGGtt                               >  1:14969844‑M2/29‑35 (MQ=255)
     gcggcgtttctccggtatcggtgggggGGTGGGtt                               >  1:1966828‑M2/28‑35 (MQ=255)
     gcggcgtttctccggtatcggtgggggGGGGGGtt                               >  1:18890271‑M2/28‑35 (MQ=255)
     gccggtgctgctgggcgcggagtggctgGGGGTtt                               >  1:11936483‑M2/29‑35 (MQ=255)
     ctcctgcatggactccggtaactggctgGGGGGtt                               >  1:3061332‑M2/29‑35 (MQ=255)
     cggtatgatcggctttggcctgtggctgGGGGGtt                               >  1:9099797‑M2/29‑35 (MQ=255)
      tatttagcctggccctgatgctggctggggggggg                              >  1:7651163‑M2/28‑32 (MQ=255)
      tatttagcctggccctgatgctggctggggggggg                              >  1:1002430‑M2/28‑32 (MQ=255)
      tatttagcctggccctgatgctggctgGGGGGgtt                              >  1:1127276‑M2/28‑35 (MQ=255)
      cagctcaaaagcctcggtttgtggttgGGGGGttt                              >  1:17624010‑M2/28‑35 (MQ=255)
      cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt                              >  1:16192227/1‑35 (MQ=255)
      atgctgccgaacgccccagcatggctgGGGGGgtt                              >  1:18690715‑M2/28‑35 (MQ=255)
      atagcattctgagacgctttacggctggGGGTttt                              >  1:2317498‑M2/29‑35 (MQ=255)
       tagcattctgagacgctttacggctggGGGGtttt                             >  1:6624441‑M2/28‑35 (MQ=255)
       gtttgcgcgcgatgaatcttcggctgGGGGGgttt                             >  1:14820217‑M2/27‑35 (MQ=255)
       gtttgaagttgcacgccaaatggctgGGGGGgttt                             >  1:9556537‑M2/27‑35 (MQ=255)
       gtatgatcggctttggcctgtggctgGGGGGtttt                             >  1:10356438‑M2/27‑35 (MQ=255)
       ggcgtttctccggtatcggtgggggGGGGGGgttt                             >  1:5101918‑M2/26‑35 (MQ=255)
       atttagcctggccctgatgctggctgGGGGGtgtt                             >  1:5047186‑M2/27‑35 (MQ=255)
       atttagcctggccctgatgctggctgGGGCgtttg                             >  1:6262844‑M2/27‑34 (MQ=255)
       aaTATTGATTGTCCAGAAGGTGGCTGGGGGGtttt                             <  1:20365660/35‑1 (MQ=255)
       aaTATTGATTGTCCAGAAGGTGGCTGGGGGGtttt                             <  1:10881032/35‑1 (MQ=255)
        ggtgctgctgggcgcggagtggctgGGGGggtttc                            >  1:5542116‑M2/26‑34 (MQ=255)
        gctcaaaagcctcggtttgtggttgGGGGggtttc                            >  1:7944613‑M2/26‑34 (MQ=255)
        gcgtttctccggtatcggtgggggGGGGGgttttc                            >  1:6402107‑M2/25‑34 (MQ=255)
        atcgtaacggaaggtggtGTGGCTGGGGGtttttc                            >  1:15450486‑M2/19‑34 (MQ=255)
        atcgtaacggaaggtggtGTGGCTGGGGGgttttt                            >  1:11621332‑M2/19‑34 (MQ=255)
         ttgcgcgcgatgaatcttcggctgGGGggtttttt                           >  1:15486358‑M2/25‑33 (MQ=255)
         ttgcgcgcgatgaatcttcggctgGGGggtttttt                           >  1:5852907‑M2/25‑33 (MQ=255)
         ttgcgcgcgatgaatcttcggctgGGGGGTTTtgt                           >  1:10147043‑M2/25‑35 (MQ=255)
         tatTGATTGTCCAGAAGGTGGCTGGGGGGTTTtgt                           <  1:19717765/35‑1 (MQ=255)
         cgtttctccggtatcggtgggggGGGGggtttttt                           >  1:8144090‑M2/24‑33 (MQ=255)
          tgcgcgcgatgaatcttcggctgGGGGGTTTtttg                          >  1:5779040‑M2/24‑35 (MQ=255)
          cattctgagacgctttacggctggGgggtttttcc                          >  1:4959003‑M2/25‑32 (MQ=255)
          attgattgTCCAGAAGGTGGCTGGGGGGTTTtgtg                          >  1:14734834/1‑35 (MQ=255)
          attgattgTCCAGAAGGTGGCTGGGGGGTTTtgtg                          <  1:8537398/35‑1 (MQ=255)
           ttgattgTCCAGAAGGTGGCTGGGGGGTTTTTTgg                         >  1:20136167/1‑35 (MQ=255)
            tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa                        <  1:928671/35‑1 (MQ=255)
            tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa                        >  1:4370567/1‑35 (MQ=255)
            tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa                        <  1:12882169/35‑1 (MQ=255)
             gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt                       >  1:2956472/1‑35 (MQ=255)
              attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc                      >  1:4695872/1‑35 (MQ=255)
              attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc                      <  1:283343/35‑1 (MQ=255)
                tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca                    <  1:19432875/35‑1 (MQ=255)
                tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca                    <  1:2606678/35‑1 (MQ=255)
                tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca                    <  1:3752761/35‑1 (MQ=255)
                 gTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccac                   >  1:11520548/1‑35 (MQ=255)
                 gTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccac                   <  1:8655697/35‑1 (MQ=255)
                  tCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc                  >  1:15874337/1‑35 (MQ=255)
                  tCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc                  <  1:3886814/35‑1 (MQ=255)
                  tCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc                  >  1:15043086/1‑35 (MQ=255)
                   ccAGAAGGTGGCTGGGGGGTTTTGTGGATccacca                 >  1:13871952/1‑35 (MQ=255)
                   ccAGAAGGTGGCTGGGGGGTTTTGTGGATccacca                 >  1:15653859/1‑35 (MQ=255)
                    cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg                >  1:5420983/1‑35 (MQ=255)
                    cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg                <  1:18331882/35‑1 (MQ=255)
                    cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg                >  1:2211603/1‑35 (MQ=255)
                     aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc               >  1:2751387/1‑35 (MQ=255)
                      gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg              >  1:8268116/1‑35 (MQ=255)
                       aaGGTGGCTTGGGGGTTTTGTGGATCCACCAGCgg             >  1:1173011/1‑34 (MQ=255)
                       aaGGTGGCTGGGGGGTTTTGTGGATCCGCCAGCga             <  1:4088361/35‑1 (MQ=255)
                        aGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgag            <  1:17483092/35‑1 (MQ=255)
                        aGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgag            <  1:12355174/35‑1 (MQ=255)
                         ggTGGCTGGGGGGTTTTTTGGATCCACCAGCgaga           >  1:7146958/1‑35 (MQ=255)
                            ggctgGGGGGTTTTGTGGATCCACCAGCGAGAATg        <  1:7434918‑M2/30‑1 (MQ=255)
                              ctgGGGGGTTTTGTGGATCCATCAGCGAGAATGTa      >  1:13145248‑M2/4‑35 (MQ=255)
                              ctgGGGGGTTTTGTGGATCCACCAGCGAGAATGTa      <  1:10925614‑M2/32‑1 (MQ=255)
                              ctgGGGGGTTTTGTGGATCCACCAGCGAGAATGTa      <  1:18519260‑M2/32‑1 (MQ=255)
                               tgGGGGGTTTTGTGGATCCACCAGCGAGAATGTAc     <  1:9366146‑M2/33‑1 (MQ=255)
                                 gGGGGTTTTGTGGATCCACCAGCGAGAATGTACGc   >  1:316925‑M2/2‑35 (MQ=255)
                                  ggggTTTTGTGGATCCACCAGCGAGAATGTACGCa  <  1:17036719/35‑1 (MQ=255)
                                  |                                  
TGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTACGCA  >  REL606/3882282‑3882350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.