New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2064682 =77 (0.750)9 (0.110) 3/38 NT 10.8% coding (595/1218 nt) wcaC predicted glycosyl transferase
?REL606 = 3433062 88 (1.080)pseudogene (399/621 nt) yhfS putative enzyme; b3376_1

Only 100 of 160 total aligned reads displayed.

GCTTTTGCGCCTCTTCCAGCACTCTGGCGGCAATCGGCTGATGAAACTCGACAATCAACACCTTCGACT  >  REL606/3433028‑3433096
                                  |                                  
gcTTTTGCGCCTCTTCCAGCACTCTGGCGGCAATc                                    >  1:13732954/1‑35 (MQ=255)
 cTTTTGCGCCTCTTCCAGCACTCTGGCGGCAATCg                                   >  1:10053085‑M2/1‑34 (MQ=255)
 cTTTTGCGCCTCTTCCAGCACTCTGGCGGCAATCg                                   >  1:5399197‑M2/1‑34 (MQ=255)
 cTTTGGCGCCTCTTCCAGCGCTCTGGCGGCAATCg                                   <  1:19404839/35‑1 (MQ=25)
  ttttGCGCCTCTTCCAGCACTCTGGCGGCAATCgg                                  <  1:10215943‑M2/35‑3 (MQ=255)
  ttttGCGCCTCTTCCAGCACTCTGGCGGCAATCgg                                  >  1:3141308‑M2/1‑33 (MQ=255)
  ttttGCGCCTCTTCCAGCACTCTGGCGGCAATCgg                                  <  1:4138472‑M2/35‑3 (MQ=255)
  ttttGCGCCTCTTCCAGCACTCTGGCGGCAATCgg                                  >  1:8009132‑M2/1‑33 (MQ=255)
  ttttGCGCCTCTTCCAGCACTCTGGCGGCAATCgg                                  >  1:13137954‑M2/1‑33 (MQ=255)
   tttGCGCCTCTTCCAGCACTCTGGCGGCAATCggc                                 >  1:19575113‑M2/1‑32 (MQ=255)
   tttGCGCCTCTTCCAGCACTCTGGCGGCAATCggc                                 <  1:5561104‑M2/35‑4 (MQ=255)
   tttGCGCCTCTTCCAGCACTCTGGCGGCAATCggc                                 <  1:6281905‑M2/35‑4 (MQ=255)
    ttGCGCCTCTTCCAGCACTCTGGCGGCAATCggct                                >  1:20265990‑M2/1‑31 (MQ=255)
    ttGCGCCTCTTCCAGCACTCTGGCGGCAATCggct                                <  1:1716092‑M2/35‑5 (MQ=255)
       cgcCTCTTCCAGCACTCTGGCGGCAATCggctggg                             <  1:9357627‑M2/35‑8 (MQ=255)
       cgcCTCTTCCAGCACTCTGGCGGCAATCggctggg                             <  1:14576504‑M2/35‑8 (MQ=255)
       cgcCTCTTCCAGCACTCTGGCGGCAATCGGCtgat                             <  1:11647304/35‑1 (MQ=255)
        gcCTCTTCCAGCACTCTGGCGGCAATCggctggtt                            <  1:7886900‑M2/35‑9 (MQ=255)
        gcCTCTTCCAGCACTCTGGCGGCAATCggctgggg                            <  1:20414309‑M2/35‑9 (MQ=255)
         ccTCTTCCAGCACTCTGGCGTCAATCGGCtggtga                           >  1:9612221/1‑35 (MQ=25)
         ccTCTTCCAGCACTCTGGCGGCAATCggctggagg                           <  1:7290745‑M2/35‑10 (MQ=255)
         ccTCTTCCAGCACTCTGGCGGCAATCGGCtgatga                           <  1:13103538/35‑1 (MQ=255)
         ccTCTTCCAGCACTCTGGCGGCAATCGGCtgatga                           <  1:11294904/35‑1 (MQ=255)
          ctctTCCAGCACTCTGGCGGCAATCggctggtgga                          <  1:4494686‑M2/35‑11 (MQ=255)
          ctctTCCAGCACTCTGGCGGCAATCGGCTGATGaa                          <  1:15788439/35‑1 (MQ=255)
           tctTCCAGCACTCTGGCGGCAATCggctgggggaa                         <  1:15953539‑M2/35‑12 (MQ=255)
           tctTCCAGCACTCTGGCGGCAATCGGCTGGTGaaa                         >  1:18400692/1‑35 (MQ=255)
           tctTCCAGCACTCTGGCGGCAATCGGCTGATGaaa                         <  1:6387172/35‑1 (MQ=255)
            ctTCCAGCACTCTGGCGGCAATCGGCTGATGAAAc                        <  1:19068022/35‑1 (MQ=255)
            ctTCCAGCACTCTGGCGGCAATCGGCTGATGAAAc                        <  1:10813568/35‑1 (MQ=255)
             ttCCAGCTCTCTGGCGGCAATCggctgggggaaac                       <  1:20059548‑M2/35‑14 (MQ=255)
             ttCCAGCACTCTGGCTGCAATCggctgggggaaat                       <  1:3248176‑M2/35‑14 (MQ=255)
             ttCCAGCACTCTGGCGGCAATCggctgggggaaaa                       <  1:17052878‑M2/35‑14 (MQ=255)
             ttCCAGCACTCTGGCGGCAATCggctgagggaaat                       <  1:4639022‑M2/35‑14 (MQ=255)
             ttCCAGCACTCTGGCGGCAATCGGCTGATGAAACt                       <  1:14884237/35‑1 (MQ=255)
             ttCCAGCACTCTGGCGGCAATCGGCTGATGAAACt                       <  1:6967984/35‑1 (MQ=255)
              tCCAGTACTCTGGCGGCAATCGGCTGGGGAAAATc                      >  1:11541679/1‑35 (MQ=16)
              tCCAGCACTCTGGCGGCAATCggctgggggaaata                      <  1:8336365‑M2/35‑15 (MQ=255)
              tCCAGCACTCTGGCGGCAATCggctggggaaaatc                      <  1:10470975‑M2/35‑15 (MQ=255)
              tCCAGCACTCTGGCGGCAATCGGCTGGTGAAAATc                      >  1:20592981/1‑35 (MQ=25)
              tCCAGCACTCTGGCGGCAATCGGCTGATGAAACTc                      <  1:110128/35‑1 (MQ=255)
              tCCAGCACTCTGGCGGCAATCGGCTGATGAAACTc                      <  1:9340975/35‑1 (MQ=255)
              tCCAGCACTCTGGCGGCAATCGGCTGATGAAACTc                      <  1:19664367/35‑1 (MQ=255)
              tCCACCACTCTGGCGGCAATCGGCTGATGAAACTc                      <  1:4217776/35‑1 (MQ=255)
               ctaGCACTCTGGCGGCAATCGGCTGATGAAACTCg                     <  1:128393/33‑1 (MQ=255)
               ccAGCACTCTGGCGGCAATCggctgggggaaatcg                     <  1:17351053‑M2/35‑16 (MQ=255)
               ccAGCACTCTGGCGGCAATCGGCTGGTGGAAATCg                     >  1:8634834/1‑35 (MQ=21)
               ccAGCACTCTGGCGGCAATCGGCTGATGAAACTca                     >  1:7603447/1‑34 (MQ=255)
               ccAGCACTCTGGCGGCAATCGGCTGATGAAACTCg                     <  1:3552080/35‑1 (MQ=255)
               ccAGCACTCTGGCGGCAATCGGCTGATGAAACTCg                     <  1:16187875/35‑1 (MQ=255)
               ccAGCACTCTGGCGGCAATCGGCTGATGAAACTCg                     <  1:14435741/35‑1 (MQ=255)
                cAGCACTCTGGCGGCAATCGGCTGATGAAACTCGa                    <  1:10498630/35‑1 (MQ=255)
                cAGCACTCTGGCGGCAATCGGCTGATGAAACTCGa                    <  1:13517979/35‑1 (MQ=255)
                 aGCACTCTGGCGGCAATCGGCTGGTGAAAATCGAc                   >  1:3451506/1‑35 (MQ=25)
                 aGCACTCTGGCGGCAATCGGCTGATGAAACTCGAc                   <  1:844778/35‑1 (MQ=255)
                 aGCACTCTGGCGGCAATCGGCTGATGAAACTCGAc                   <  1:20136103/35‑1 (MQ=255)
                 aGCACTCTGGCGGCAATCGGCTGATGAAACTCGAc                   <  1:19656992/35‑1 (MQ=255)
                 aGCACTCTGGCGGCAATCGGCTGATGAAACTCGAc                   <  1:18926189/35‑1 (MQ=255)
                  gCACTCTGGCGGCAATCGGCTGATGAAACTCGACa                  <  1:8441474/35‑1 (MQ=255)
                  gCACTCTGGCGGCAATCGGCTGATGAAACTCGACa                  <  1:6119607/35‑1 (MQ=255)
                   cACTCTGGCGGCAATCGGCTGGTGGAAATCGACaa                 >  1:5232669/1‑35 (MQ=21)
                   cACTCTGGCGGCAATCGGCTGATGAAACTCGACaa                 <  1:2410166/35‑1 (MQ=255)
                    aCTCTGGCGGCAATCGGCTGATGAAACTCGACAAt                <  1:9854761/35‑1 (MQ=255)
                    aCTCTGGCGGCAATCGGCTGATGAAACTCGACAAt                <  1:8398041/35‑1 (MQ=255)
                    aCTCTGGCGGCAATCGGCTGATGAAACTCGACAAt                <  1:16894691/35‑1 (MQ=255)
                     ctctGGCGGCAATCGGCTGATGAAACTCGACAATc               <  1:16077177/35‑1 (MQ=255)
                     ctctGGCGGCAATCGGCTGATGAAACTCGACAATc               <  1:19943303/35‑1 (MQ=255)
                      tctGGCGGCAATCGGCTGATGAGACTCGACAATCa              <  1:14869334/35‑1 (MQ=255)
                      tctGGCGGCAATCGGCTGATGAAACTCGACAATCa              <  1:13674202/35‑1 (MQ=255)
                      tctGGCGGCAATCGGCTGATGAAACTCGACAATCa              <  1:13336007/35‑1 (MQ=255)
                      tctGGCGGCAATCGGCTGATGAAACTCGACAATCa              <  1:15075470/35‑1 (MQ=255)
                       ctGGCGGCAATCGGCTGATGAAACTCGACAATCaa             <  1:14329132/35‑1 (MQ=255)
                        tGGCGGCAATCGGCTGATGAAACTCGACAATCAac            <  1:18132082/35‑1 (MQ=255)
                        tGGCGGCAATCGGCTGATGAAACTCGACAATCAac            <  1:9043095/35‑1 (MQ=255)
                         ggcggcAATCGGCTGATGAAACTCGACAATCAaca           <  1:16656903/35‑1 (MQ=255)
                         ggcggcAATCGGCTGATGAAACTCGACAATCAaca           <  1:6549690/35‑1 (MQ=255)
                          gcggcAATCGGCTGATGAAACTCGACAATCAacac          <  1:9694008/35‑1 (MQ=255)
                          gcggcAATCGGCTGATGAAACTCGACAATCAacac          <  1:20123326/35‑1 (MQ=255)
                          gcggcAATCGGATGATGAAACTCGACAATCAacac          <  1:7783405/35‑1 (MQ=255)
                          gaggcAATCGGCTGATGAAACTCGACAATCAacac          <  1:5011747/33‑1 (MQ=255)
                           gggcAATCGGCTGATGAAACTCGACAATCAACAcc         <  1:10668225/34‑1 (MQ=255)
                           cggcAATCGGCTGATGAAACTCGACAATCAACAcc         <  1:14804410/35‑1 (MQ=255)
                           cggcAATCGGCTGATGAAACTAGACAATCAACAcc         <  1:12348590/35‑1 (MQ=255)
                            ggcAATCGGCTGATGAAACTCGACAATCAacacat        <  1:4400352/35‑3 (MQ=255)
                            ggcAATCGGCTGATGAAACTCGACAATCAACACCt        <  1:12360391/35‑1 (MQ=255)
                              cAATCTGCTGATGAAACTCGACAATCAACACCTTc      >  1:17740972/1‑35 (MQ=255)
                              cAATCGGCTTATGAAACTCGACAATCAACACCTTc      >  1:13329380/1‑35 (MQ=255)
                              cAATCGGCTGATGAAACTCGACAATCAACACCTTc      <  1:15451179/35‑1 (MQ=255)
                              cAATCGGCTGATGAAACTCGACAATCAACACCTTc      <  1:9181627/35‑1 (MQ=255)
                              cAATCGGCTGATGAAACTCGACAATCAACACCTTc      <  1:11032502/35‑1 (MQ=255)
                              cAATCGGCTGATGAAACTCGACAATAAACACCTTc      <  1:14660379/35‑1 (MQ=255)
                               aaTCGGCTGATGAAACTCGACAATCAACACCTTCg     <  1:2755020/35‑1 (MQ=255)
                               aaTCGGCTGATGAAACTCGACAATCAACACCTTCg     >  1:15709080/1‑35 (MQ=255)
                                aTCGGCTGATGAAACTCGACAATCAACACCTTCGa    <  1:15090954/35‑1 (MQ=255)
                                aTCGGCTGATGAAACTCGACAATCAACACCTTCGa    <  1:4184173/35‑1 (MQ=255)
                                  cGGCTGATGAAACTCGACAATCAACACCTTCGACt  <  1:14347430/35‑1 (MQ=255)
                                  cGGCTGATGAAACTCGACAATCAACACCTTCGACt  >  1:2417863/1‑35 (MQ=255)
                                  cGGCTGATGAAACTCGACAATCAACACCTTCGACt  <  1:19902467/35‑1 (MQ=255)
                                  cGGCTGATGAAACTCGACAATCAACACCTTCGACt  <  1:4726343/35‑1 (MQ=255)
                                  cGGCTGATGAAACTCGACAATCAACACCTTCGACt  <  1:1060879/35‑1 (MQ=255)
                                  |                                  
GCTTTTGCGCCTCTTCCAGCACTCTGGCGGCAATCGGCTGATGAAACTCGACAATCAACACCTTCGACT  >  REL606/3433028‑3433096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.