New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1087708 = | 57 (0.550) | 7 (0.090) | 3/36 | NT | 11.8% | coding (342/801 nt) | ycdJ | predicted hydrolase |
? | REL606 | = 1145443 | 62 (0.800) | intergenic (‑8/‑147) | flgA/flgB | flagellar basal body P‑ring biosynthesis protein A/flagellar basal‑body rod protein B |
TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1087747‑1087708 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggGGGCGAAAATGCTGATAATAAAACGTAGCGTGGC < REL606/1145443‑1145410 TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACG < 1:735679/35‑1 TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACG < 1:3274871/35‑1 TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACG < 1:18121894/35‑1 TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACG < 1:11848459/35‑1 TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACG < 1:10892571/35‑1 TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACG < 1:11598947/35‑1 CCCGCGTCGGTAACTGTGCTGATCAGCGTTAACGG < 1:152442/35‑1 CCCGCGTCGGTAACTGTGCTGATCAGCGTTAACGG < 1:4428691/35‑1 CCCGCGTCGGTAACTGTGCTGATCAGCGTTAACGG < 1:16987084/35‑1 CCGCGTCGGTAACTGTGCTGATCAGCGTTAACGGC < 1:15439289/35‑1 CCGCGTCGGTAACTGTGCTGATCAGCGTTAACGGC < 1:16610005/35‑1 CGCGTCGGTAACTGTGCTGATCAGCGTTAACGGCT < 1:13227205/35‑1 CGCGTCGGTAACTGTGCTGATCAGCGTTAACGGCT < 1:3918175/35‑1 GCGTCGGTAACTGTGCTGATCAGCGTTAACGGCTG < 1:17872182/35‑1 GCGTCGGTAACTGTGCTGATCAGCGTTAACGGATG < 1:9410194/35‑1 aGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG < 1:9859970/34‑1 CGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG < 1:8452182/35‑1 CGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG < 1:7277536/35‑1 CGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG < 1:631870/35‑1 CGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG < 1:6221339/35‑1 CGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG < 1:4510291/35‑1 TCGGTAACTGTGCTGATCAGCGTTAACGGCTGGGG > 1:8461431/1‑35 TCGGTAACTGTGCTGATCAGCGTTAACGGCTGGGG > 1:16129658/1‑35 TCGGTAACTGTGCTGATCAGCGTTAACGGCTGGGG > 1:18176561/1‑35 CGGTAACTGTGCTGATCAGCGTTAACGGCTGGGGt > 1:12949014/1‑34 CGGTAACTGTGCTGATCAGCGTTAACGGCTGGGGc > 1:7605655/1‑34 GTAACTGTGCTGATCAGCGTTAACGGCTGGGGGCG > 1:5449062/1‑35 GTAACTGTGCTGATCAGCGTTAACGGCTGGGGACG > 1:17940490/1‑35 AACTGTGCTGATCAGCGTTAACGGCTGGGGTCGAA > 1:5736915/1‑35 AACTGTGCTGATCAGCGTTAACGGCTGGGGGCGAA > 1:1103353/1‑35 AACTGTGCTGATCAGCGTTAACGGCTGGGGGCGAA > 1:978401/1‑35 AACTGTGCTGATCAGCGTTAACGGCTGGGGACGAA > 1:15487954/1‑35 ACTGTGCTGATCAGCGTTAACGGCTGGGGGGGAAA > 1:2198900/1‑35 ACTGTGCTGATCAGCGTTAACGGCTGGGGGCGAAA > 1:9477507/1‑35 CTGTGCTGATCAGCGTTAACGGCTGGGGGCGGAAA > 1:8882734/1‑35 GGGGCGAAAATGCTGATAATAAAACGTAGCGTGGC > 1:16371427/1‑35 GGGGCGAAAATGCTGATAATAAAACGTAGCGTGGC > 1:437840/1‑35 GGGGCGAAAATGCTGATAATAAAACGTAGCGTGGC < 1:19051556/35‑1 GGGGCGAAAATGCTGATAATAAAACGTAGCGTGGC < 1:9569787/35‑1 TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1087747‑1087708 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggGGGCGAAAATGCTGATAATAAAACGTAGCGTGGC < REL606/1145443‑1145410 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |