New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3826321 =43 (0.420)5 (0.060) 3/42 NT 9.5% coding (314/1662 nt) yidE hypothetical protein
?REL606 = 3885956 58 (0.650)coding (39/1890 nt) gidA glucose‑inhibited division protein A

Only 100 of 102 total aligned reads displayed.

ATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTT  >  REL606/3826287‑3826355
                                   |                                  
atCAAACAGTTTATGCAGGATGGCGGTAACCAGac                                    <  1:14483707/35‑1 (MQ=255)
atCAAACAGTTTATGCAGGATGGCGGGAAACAGac                                    >  1:2006619/1‑35 (MQ=25)
 tCAACCAGTTTATGCAGGATGGCGGTAACCAGacc                                   <  1:3855975/35‑1 (MQ=255)
 tCAAACAGTTTATGCAGGATGGCGGTAACCAGacc                                   <  1:12821681/35‑1 (MQ=255)
 tCAAACAGTTTATGCAGGATGGCGGGAAACAAacc                                   >  1:5747611/1‑35 (MQ=21)
 tCAAACAGTTTATGCAGGATGGCGGGAAACAAaca                                   >  1:2700507/1‑34 (MQ=21)
 ggccatcgcggcctcggtgcctgcatgacccccgc                                    <  1:8733523‑M1/1‑1 (MQ=255)
 ggccatcgcggcctcggtgccggcatgacccccgc                                    >  1:39411‑M1/35‑35 (MQ=255)
  gccatcgcggcctcggtgcctgcatgacccccgcc                                   >  1:4368942‑M1/34‑35 (MQ=255)
  cAAACAGTTTATGCAGGATGGCGGTGAACCAAacc                                   >  1:15401810/1‑35 (MQ=21)
  cAAACAGTTTATGCAGGATGGCGGTAACCAGacca                                  <  1:14061573/35‑1 (MQ=255)
  cAAACAGTTTATGCAGGATGGCGGGGAACAGacca                                  >  1:359312/1‑35 (MQ=21)
  cAAACAGTTTATGCAGGATGGCGGGGAACAGacca                                  >  1:8965995/1‑35 (MQ=21)
   ccttcgcggcctcggtgcctgcatgacccccgCCa                                  >  1:5020117‑M1/33‑35 (MQ=255)
   ccatcgcggcctcggtgcctgcatgacccccgCCa                                  <  1:14863452‑M1/3‑1 (MQ=255)
   ccatcgcggcctcggtgcatgcatgacccccgCCa                                  >  1:19313459‑M1/33‑35 (MQ=255)
   ccagcgcggcctcggtgcctgcatgacccccgCCa                                  >  1:16688094‑M1/33‑35 (MQ=255)
   aaaCAGTTTATGCAGGATGGCGGTAACCAGaccan                                 <  1:4871005/35‑1 (MQ=255)
   aaaCAGTTTATGCAGGATGGCGGTAACCAGaccac                                 <  1:3043617/35‑1 (MQ=255)
   aaaCAGTTTATGCAGGATGGCGGTAACCAGaccac                                 <  1:12092337/35‑1 (MQ=255)
   aaaCAGTTTATGCAGGATGGCGGTAACCAGaccac                                 <  1:9048062/35‑1 (MQ=255)
   aaaCAGTTTATGCAGGATGGCGGTAACCAGaccac                                 <  1:16726092/35‑1 (MQ=255)
   aaaCAGTTTATGCAGGATGGCGGTAACCAGacaac                                 <  1:11570961/35‑1 (MQ=255)
    aaCAGTTTATGCAGGATGGCGGTAACCAGaccacc                                <  1:15952868/35‑1 (MQ=255)
    aaCAGTTTATGCAGGATGGCGGGAAACAGaacacc                                >  1:13473594/1‑35 (MQ=21)
    aaCAGTTTATGCAGGATGGCGGGAAACAGaacacc                                >  1:9573793/1‑35 (MQ=21)
      cAGTTTATGCAGGATGGCGGGAACCAGACCCCCga                              >  1:7136630/1‑35 (MQ=25)
      cAGTTTATGCAGGATGGCGGGAAACCGaacaccca                              >  1:19952160/1‑33 (MQ=12)
      cAGTTTATGCAGGATGGCGGGAAACAGaccacccc                              >  1:7067550/1‑33 (MQ=25)
       aGTTTATGCAGGATGGCGGGAAACAAaccacccac                             >  1:3647583/1‑32 (MQ=16)
            aTGCAGGATGGCGGGAAACAGACCACCGAtgatga                        >  1:11956901/1‑35 (MQ=37)
             tGCAGGATGGCGGTAACCAGACCACAGATGATGAc                       <  1:10926860/35‑1 (MQ=255)
                  gATGGCGGTAACCACCCCCCGATGATGACGATCAg                 <  1:4430647/35‑1 (MQ=25)
                      gctgTAACCAGACCACCGATGATGACGATCAGAAc              >  1:5190266/4‑35 (MQ=255)
                      gCGGTAACCATACCACCGATGATGACGATCAGAAc              >  1:18445639/1‑35 (MQ=255)
                      gCGGTAACCAGACCACCGATGATGACGATCAGAAc              >  1:5989055/1‑35 (MQ=255)
                      gCGGTAACCAGACCACCGATGATGACGATCAGAAc              >  1:2722714/1‑35 (MQ=255)
                      gCGGTAACCAGACCACCGATGATGACGATCAGAAc              >  1:18963700/1‑35 (MQ=255)
                      gCGGTAACCAGACCACCGATGATGACGATCAGAAc              >  1:19293175/1‑35 (MQ=255)
                       cGGTAACCAGACCACCGATGATGACGATCAGAACa             >  1:17568508/1‑35 (MQ=255)
                       cGGTAACCAGACCACCGATGATGACGATCAGAACa             >  1:9442187/1‑35 (MQ=255)
                       cGGTAACCAGACCACCGATGATGACGATCAGAACa             >  1:17806576/1‑35 (MQ=255)
                       cGGTAACCAGACCACCGATGATGACGATCAGAACa             >  1:17823029/1‑35 (MQ=255)
                       cGGTAACCAGACCACCGATGATGACGATCAGAACa             >  1:17983610/1‑35 (MQ=255)
                       cGGTAACCAGACCACCGATGATGACGATCAGAACa             >  1:2085443/1‑35 (MQ=255)
                       cGGTAACCAGACCACCGATGATGACGATCAGAACa             >  1:7534049/1‑35 (MQ=255)
                       cGGTAACCAGACCACCGATGATGACGATCAGAACa             >  1:14407196/1‑35 (MQ=255)
                        ggTAACCAGACCACCTATGATGACGATCAGAACAg            >  1:4173886/1‑35 (MQ=255)
                        ggTAACCAGACCACCGATGATGACGATCAGAACAg            >  1:4906009/1‑35 (MQ=255)
                        ggTAACCAGACCACCGATGATGACGATCAGAACAg            >  1:4721151/1‑35 (MQ=255)
                        ggTAACCAGACCACCGATGATGACGATCAGAACAg            >  1:18367447/1‑35 (MQ=255)
                        ggTAACCAGACCACCGATGATGACGATCAGAACAg            >  1:16354792/1‑35 (MQ=255)
                        ggTAACCAGACCACCGATGATGACGATCAGAACAg            >  1:5547525/1‑35 (MQ=255)
                        attAACCACCCCACCGATGATGACGATCAGAACAg            <  1:5761895/33‑1 (MQ=25)
                         gTAACCAGACCACCGATGATGACGATCAGAACAGc           >  1:20005724/1‑35 (MQ=255)
                         gTAACCAGACCACCGATGATGACGATCAGAACAGc           >  1:10021739/1‑35 (MQ=255)
                         gTAACCAGACCACCGATGATGACGATCAGAACAGc           >  1:17165299/1‑35 (MQ=255)
                         gTAACCAGACCACCGATGATGACGATCAGAACAGc           >  1:13679605/1‑35 (MQ=255)
                         gTAACCAGACCACCGATGATGACGATCAGAACAGc           >  1:11368268/1‑35 (MQ=255)
                          tAACCAGACCACCGATGATGACGATCAGAACAGCa          >  1:15368871/1‑35 (MQ=255)
                          tAACCAGACCACCGATGATGACGATCAGAACAGCa          >  1:15386378/1‑35 (MQ=255)
                          tAACCAGACCACCGATGATGACGATCAGAACAGCa          >  1:18861304/1‑35 (MQ=255)
                          tAACCAGACCACCGATGATGACGATCAGAACAGCa          >  1:20311865/1‑35 (MQ=255)
                           nacccAGCCCACCGATGATGACGATCAGAACAGCa          <  1:7233480/32‑1 (MQ=37)
                           gaccccccCCACCGATGATGACGATCAGAACAGCa          >  1:7885463‑M1/9‑35 (MQ=255)
                            cccccccCCACCGATGATGACGATCAGAACAGCaa         >  1:752571‑M1/8‑35 (MQ=255)
                            accccccCCACCGATGATGACGATCAGAACAGCaa         >  1:7376010‑M1/8‑35 (MQ=255)
                            aaCCAGACCACCGATGATGACGATCAGAACAGCaa         >  1:7349139/1‑35 (MQ=255)
                            aaCCAGACCACCGATGATGACGATCAGAACAGCaa         >  1:1743635/1‑35 (MQ=255)
                            aaCCAGACCACCGATGATGACGATCAGAACAGCaa         >  1:11045295/1‑35 (MQ=255)
                            aaCCAGACCACCGATGATGACGATCAGAACAGCaa         >  1:19623450/1‑35 (MQ=255)
                             ccccccCCACCGATGATGACGATCAGAACAGCaaa        >  1:12042794‑M1/7‑35 (MQ=255)
                             ccccccCCACCGATGATGACGATCAGAACAGCaaa        >  1:13702779‑M1/7‑35 (MQ=255)
                             aCCAGACCACCGATGATGACGATCAGAACAGCaaa        >  1:14787423/1‑35 (MQ=255)
                             aCCAGACCACCGATGATGACGATCAGAACAGCaaa        >  1:14023970/1‑35 (MQ=255)
                             aCCAGACCACCGATGATGACGATCAGAACAGCaaa        >  1:1780281/1‑35 (MQ=255)
                             aCCAGACCACCGATGATGACGATCAGAACAGCaaa        >  1:5064400/1‑35 (MQ=255)
                              cccccCCACCGATGATGACGATCAGAACAGCAAAc       >  1:18638028‑M1/6‑35 (MQ=255)
                              ccAGACCACCGATGATGACGATCAGAACAGCAAAc       >  1:4441170/1‑35 (MQ=255)
                              ccAGACCACCGATGATGACGATCAGAACAGCAAAc       >  1:11065432/1‑35 (MQ=255)
                              ccAGACCACCGATGATGACGATCAGAACAGCAAAc       >  1:11171334/1‑35 (MQ=255)
                              ccAGACCACCGATGATGACGATCAGAACAGCAAAc       >  1:19455801/1‑35 (MQ=255)
                              ccAGACCACCGATGATGACGATCAGAACAGCAAAc       >  1:12844067/1‑35 (MQ=255)
                               naGACCACCGATGATGACGATCAGAACAGCAAACa      >  1:3490755/2‑35 (MQ=255)
                                cccCCACCGATGATGACGATCAGAACAGCAAACAg     >  1:6782207‑M1/4‑35 (MQ=255)
                                cccCCACCGATGATGACGATCAGAACAGCAAACAg     >  1:2400438‑M1/4‑35 (MQ=255)
                                cccCCACCGATGATGACGATCAGAACAGCAAACAg     >  1:11309648‑M1/4‑35 (MQ=255)
                                cccCCACCGATGATGACGATCAGAACAGCAAACAg     >  1:19525106‑M1/4‑35 (MQ=255)
                                aGACCACCGATGATGACGATCAGAACAGCAAACAg     >  1:18913673/1‑35 (MQ=255)
                                aGACCACCGATGATGACGATCAGAACAGCAAACAg     >  1:13677191/1‑35 (MQ=255)
                                aGACCACCGATGATGACGATCAGAACAGCAAACAg     >  1:11133074/1‑35 (MQ=255)
                                aGACCACCGATGATGACGATCAGAACAGCAAACAg     >  1:19718470/1‑35 (MQ=255)
                                 gACCACCGATGATGACGATCAGAACAGCAAACAgg    >  1:11394990/1‑35 (MQ=255)
                                 gACCACCGATGATGACGATCAGAACAGCAAACAgg    >  1:11818035/1‑35 (MQ=255)
                                 ccCCACCGATGATGACGATCAGAACAGCAAACAgg    >  1:7139689‑M1/3‑35 (MQ=255)
                                  cCCACCGATGATGACGATCAGAACAGCAAACAGGt   >  1:14881051‑M1/2‑35 (MQ=255)
                                  accaccGATGATGACGATCAGAACAGCAAACAGGt   >  1:3423727/1‑35 (MQ=255)
                                  accaccGATGATGACGATCAGAACAGCAAACAGGt   >  1:7488035/1‑35 (MQ=255)
                                  accaccGATGATGACGATCAGAACAGCAAACAGGt   >  1:18315577/1‑35 (MQ=255)
                                   CCACCGATGATGACGATCAGAACAGCAAACAGGtt  <  1:19494423‑M1/35‑1 (MQ=255)
                                   |                                  
ATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTT  >  REL606/3826287‑3826355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.