New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 411751 =19 (0.180)8 (0.080) 3/44 NT 12.3% coding (313/591 nt) thiJ hypothetical protein
?REL606 = 1138232 97 (1.030)coding (395/648 nt) grxB glutaredoxin 2 (Grx2)

Only 100 of 164 total aligned reads displayed.

CAGACCGTCAGAGTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTGTCGACGAAATA  >  REL606/1138198‑1138266
                                  |                                  
cAGACCGTCAGAGTGGGCCAGCAGGTCGGCAAAAt                                    >  1:3568286/1‑35 (MQ=255)
cAGACCGTCAGAGTGGGCCAGCAGGTCGGCAAAAt                                    <  1:16454147/35‑1 (MQ=255)
 aGACCGTCAGAGTGGGCCAGCAGGTCGGCAAAATt                                   <  1:20121274‑M2/35‑2 (MQ=255)
  gACCGTCAGAGTGGGCCAGCAGGTCGGCAAAATta                                  >  1:9402505‑M2/1‑33 (MQ=255)
  gACCGTCAGAGTGGGCCAGCAGGTCGGCAAAATta                                  >  1:16046240‑M2/1‑33 (MQ=255)
   aCCGTCAGAGTGGGCCAGCAGGTCGGCAAAATTAc                                 <  1:9715724/35‑1 (MQ=255)
   aCCGTCAGAGTGGGCCAGCAGGTCGGCAAAATTAc                                 >  1:7841932/1‑35 (MQ=255)
   aCCGTCAGAGTGGGCCAGCAGGTCGGCAAAATTAc                                 >  1:13720529/1‑35 (MQ=255)
   aCCGTCAGAGGGGGCCAGCAGGTCGGCAAAATTAc                                 >  1:6306389/1‑35 (MQ=255)
    ccGTCAGAGTGGGCCAGCAGGTCGGCAAAATTAcc                                <  1:14159549/35‑1 (MQ=255)
    ccGTCAGAGTGGGCCAGCAGGTCGGCAAAATTAcc                                <  1:1490767/35‑1 (MQ=255)
    ccGTCAGAGTGGGCCAGCAGGTCGGCAAAATTAcc                                <  1:19638180/35‑1 (MQ=255)
    ccGTCAGAGTGGGCCAGCAGGTCGGCAAAATTAcc                                <  1:12650316/35‑1 (MQ=255)
     cGTCAGAGTGGGCCAGCAGGTCGGCAAAATTAccc                               <  1:11348979/35‑1 (MQ=255)
     cGTCAGAGTGGGCCAGCAGGTCGGCAAAATTAccc                               <  1:2687811/35‑1 (MQ=255)
      gTCAGAGTGGGCCAGCAGGTCGGCAAAATTACCcg                              <  1:13110195/35‑1 (MQ=255)
      gTCAGAGTGGGCCAGCAGGTCGGCAAAATTACCcg                              <  1:20589775/35‑1 (MQ=255)
      gTCAGAGTGGGCCAGCAGGTCGGCAAAATTACCcg                              >  1:13969493/1‑35 (MQ=255)
       tCAGAGTGGGCCAGCAGGTCGGCAAAATTACCcgc                             <  1:19551369/35‑1 (MQ=255)
       tCAGAGTGGGCCAGCAGGTCGGCAAAATTACCcgc                             >  1:19840859/1‑35 (MQ=255)
        cAGAGTGGGCCAGCAGGTCGGCAAAATTACCcgcg                            >  1:11250848/1‑35 (MQ=255)
        cAGAGTGGGCCAGCAGGTCGGCAAAATTACCcgcg                            >  1:12736596/1‑35 (MQ=255)
        cAGAGTGGGCCAGCAGGTCGGCAAAATTACCcgcg                            <  1:19008150/35‑1 (MQ=255)
         agagTGGGCCAGCAGGTCGGCAAAATTACCCgcgc                           >  1:1477167/1‑35 (MQ=255)
         agagTGGGCCAGCAGGTCGGCAAAATTACCCgcgc                           >  1:20387139/1‑35 (MQ=255)
         agagTGGGCCAGCAGGTCGGCAAAATTACCCgcgc                           >  1:3172372/1‑35 (MQ=255)
         agagTGGGCCAGCAGGTCGGCAAAATTACCCgcgc                           >  1:5963230/1‑35 (MQ=255)
          gagTGTGCCAGCAGGTCGGCAAAATTACCCGCGCt                          >  1:17211565/1‑35 (MQ=255)
          gagTGGGCCAGCAGGTCGGCAAAATTACCCGCGCt                          <  1:3295095/35‑1 (MQ=255)
          gagTGGGCCAGCAGGTCGGCAAAATTACCCGCGCt                          <  1:10404918/35‑1 (MQ=255)
           agTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTg                         <  1:663805/35‑1 (MQ=255)
            gTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTgg                        >  1:726418/1‑35 (MQ=255)
            gTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTgg                        >  1:5872402/1‑35 (MQ=255)
            gTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTgg                        <  1:19718169/35‑1 (MQ=255)
            gTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTgg                        <  1:12025657/35‑1 (MQ=255)
            gTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTgg                        >  1:8854529/1‑35 (MQ=255)
             tGGGCCAGCAGGTCGGCAAAATTACCCGCGCTGGc                       <  1:2203043/35‑1 (MQ=255)
               ggCCAGCAGGTCGGCAAAATTACCCGCGCTGGCct                     >  1:6468774/1‑35 (MQ=255)
               ggCCAGCAGGTCGGCAAAATTACCCGCGCTGGCct                     >  1:7713245/1‑35 (MQ=255)
               ggCCAGCAGGTCGGCAAAATTACCCGCGCTGGCct                     >  1:12833624/1‑35 (MQ=255)
               ggCCAGCAGGTCGGCAAAATTACCCGCGCTGGCct                     <  1:1810788/35‑1 (MQ=255)
               ggCCAGCAGGTCGGCAAAATTACCCGCGCTGGCct                     <  1:11867965/35‑1 (MQ=255)
                gCCAGCAGGTCGGCAAAATTACCCGCGCTGGCctc                    >  1:16872896/1‑35 (MQ=255)
                gCCAGCAGGTCGGCAAAATTACCCGCGCTGGCctc                    <  1:7912903/35‑1 (MQ=255)
                 ccAGCAGGTCGGCAAAATTACCCGCGCTGGCctct                   >  1:17572803/1‑35 (MQ=255)
                 ccAGCAGGTCGGCAAAATTACCCGCGCTGGCctct                   <  1:8394361/35‑1 (MQ=255)
                 ccAGCAGGTCGGCAAAATTACCCGCGCTGGCctct                   <  1:14928945/35‑1 (MQ=255)
                 ccAGCAGGTCGGCAAAATTACCCGCGCTGGCctcc                   >  1:20395011/1‑34 (MQ=255)
                 ccAGCAGGTCGGCAAAATTACCAGCGCTGGCctct                   <  1:14127601/35‑1 (MQ=255)
                   agcagGTCGGCAAAATTACCCGCGCTGGCCtcttt                 <  1:15236947/35‑1 (MQ=255)
                   agcagGTCGGCAAAATTACCCGCGCTGGCAtcttt                 <  1:14956018/35‑1 (MQ=255)
                    gcagGTCGGCAAAATTACCCGCGCTGGCCtctttc                >  1:2318693/1‑35 (MQ=255)
                    gcagGTCGGCAAAATTACCCGCGCTGGCCtctttc                <  1:4059675/35‑1 (MQ=255)
                    gcagGTCGGCAAAATTACCCGCGCTGGCCtctttc                >  1:5257255/1‑35 (MQ=255)
                     cagGTCGGCAAAATTACCCGCGCTGGCCtctttct               <  1:14171984/35‑1 (MQ=255)
                     cagGTCGGCAAAATTACCCGCGCTGGCCtctttct               >  1:16036647/1‑35 (MQ=255)
                      agGTCGGCAAAATTACCCGCGCTGGCCtctttctt              >  1:10229565/1‑35 (MQ=255)
                      agGTCGGCAAAATTACCCGCGCTGGCCtctttctt              <  1:18284938/35‑1 (MQ=255)
                      agGTCGGCAAAATTACCCGCGCTGGCCtctttctt              <  1:7796096/35‑1 (MQ=255)
                      agGTCGGCAAAATTACCCGCGCTGGCCtctttctt              >  1:6819694/1‑35 (MQ=255)
                      agGTCGGCAAAATTACCCGCGCTGGCCtctttctt              <  1:16340876/35‑1 (MQ=255)
                      agGTCGGCAAAATTACCCGCGCTGGCCtctttctt              <  1:16361535/35‑1 (MQ=255)
                       ggTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTg             <  1:9454990/35‑1 (MQ=255)
                       ggTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTg             >  1:736318/1‑35 (MQ=255)
                       ggTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTg             <  1:6921369/35‑1 (MQ=255)
                       ggTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTg             >  1:4294951/1‑35 (MQ=255)
                        gTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTGt            >  1:5650776/1‑35 (MQ=255)
                        cggggcaaAATtagccgcgacgatacgcccggaac            >  1:1830325‑M2/4‑11 (MQ=255)
                         tCGGCAAAATTACCCGCGCTGGCCTCTTTCTTGTc           >  1:7088972/1‑35 (MQ=255)
                         tCGGCAAAATTACCCGCGCTGGCCTCTTTCTTGTc           >  1:11818281/1‑35 (MQ=255)
                         gcgGCGAAATtagccgcgacgatacgcccggaacg           >  1:3806041‑M2/2‑10 (MQ=255)
                          cGGCAAAATTACCCGCGCTGGCCTCTTTCTTGTcg          >  1:6217143/1‑35 (MQ=255)
                           ggCGAAATtagccgcgacgatacgcccggaacggt         >  1:15156006‑M2/1‑8 (MQ=255)
                           ggCAAAATtagccgcgacgatacgcccggaacggt         >  1:3610130‑M2/1‑8 (MQ=255)
                           ggCAAAATTACCCGCGCTGGCCTCTTTCTTGTcga         <  1:8104309/35‑1 (MQ=255)
                            gCAAAATTACCCGCGCTGGCCTCTTTCTTGTcgac        >  1:5169604/1‑35 (MQ=255)
                            gCAAAATTACCCGCGCTGGCCTCTTTCTTGTcgac        >  1:6158264/1‑35 (MQ=255)
                            gCAAAATTACCCGCGCTGGCCTCTTTCTTGTcgac        >  1:3223613/1‑35 (MQ=255)
                            gCAAAATTACCCGCGCTGGCCTCTTTCTTGTcgac        >  1:16320717/1‑35 (MQ=255)
                            acaAAATtagccgcgacgatacgcccggaacggtg        >  1:17698701‑M2/2‑7 (MQ=255)
                             cAAAATTACCCGCGCTGGCCTCTTTCTTGTcgacg       <  1:17160062/35‑1 (MQ=255)
                             cAAAATTACCCGCGCTGGCCTCTTTCTTGTcgacg       >  1:13391040/1‑35 (MQ=255)
                              aaaaTtagccgcgacgatacgcccggaacggtgga      >  1:8080771‑M2/1‑5 (MQ=255)
                              aaaaTTACCCGCGCTGGCCTCTTTCTTGTcgacga      <  1:10621874/35‑1 (MQ=255)
                              aaaaTTACCCGCGCTGGCCTCTTTCTTGTcgacga      <  1:13179403/35‑1 (MQ=255)
                              aaaaTTACCCGCGCTGGCCTCTTTCTTGTcgacga      <  1:8440802/35‑1 (MQ=255)
                               aaaTtagccgcgacgatacgcccggaacggtggaa     >  1:11059888‑M2/1‑4 (MQ=255)
                               aaaTTGCCCGCGCTGGCCTCTTTCTTGTCGACGaa     <  1:4713970/35‑1 (MQ=255)
                               aaaTTACCCGCGCTGGCCTCTTTCTTGTCGACGaa     <  1:6456501/35‑1 (MQ=255)
                               aaaTTACCCGCGCTGGCCTCTTTCTTGTCGACGaa     >  1:16715892/1‑35 (MQ=255)
                                aaTTACCCGCGCTGGCCTCTTTCTTGTCGACGaaa    >  1:6759262/1‑35 (MQ=255)
                                 tttagccgcgacgatacgcccggaacggtggaact   >  1:10236124‑M2/2‑2 (MQ=255)
                                 tttagccgcgacgatacgcccggaacggtggaact   >  1:875189‑M2/2‑2 (MQ=255)
                                 aTtagccgcgacgatacgcccggaacggtggaact   >  1:9558335‑M2/1‑2 (MQ=255)
                                 aTTACCCGCGCTGGCCTCTTTCTTGTCGACGAAat   >  1:5255192/1‑35 (MQ=255)
                                 aTTACCCGCGCTGGCCTCTTTCTTGTCGACGAAat   <  1:15591513/35‑1 (MQ=255)
                                 aTTACCCGCGCTGGCCTCTTTCTTGTCGACGAAat   >  1:16861051/1‑35 (MQ=255)
                                 aTTACCCGCGCTGGCCTCTTTCTTGTCGACGAAat   >  1:3831188/1‑35 (MQ=255)
                                  ttagccgcgacgatacgccaggaacggtggaactg  >  1:17439896‑M2/1‑1 (MQ=255)
                                  ttACCCGCGCTGGCCTCTTTCTTGTCGACGAAata  <  1:15712882/35‑1 (MQ=255)
                                  |                                  
CAGACCGTCAGAGTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTGTCGACGAAATA  >  REL606/1138198‑1138266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.