New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 159309734 (0.330)11 (0.130) 6/40 NT 16.5% intergenic (+40/+4) ydeJ/dcp competence damage‑inducible protein A/dipeptidyl carboxypeptidase II
?REL606 4085859 = 83 (0.970)intergenic (+57/‑92) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F

AGGCTGGCCTGGCGATATCTCAGGCCAGCCATTGGTGG‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1593060‑1593097
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggGGGTTTTTTTT  >  REL606/4085859‑4085869
                                                 
AGGCTGGCCTGGCGATATCTCAGGCCAGCCCTTGG                >  1:17545466/1‑35
AGGCTGGCCTGGCGATATCTCAGGCCAGCCATTGG                >  1:10662463/1‑35
AGGCTGGCCTGGCGATATCTCAGGCCAGCCATTGG                >  1:3437187/1‑35
AGGCTGGCCTGGCGATATCTCAGGCCAGCCATTGG                >  1:19557470/1‑35
 GGCTGGCCTGGCGATATCTCAGGCCAGCCATTGGT               <  1:14949260/35‑1
 GGCGGGCCTGGCGATATCTCAGGCCAGCCATTGGT               <  1:17118764/35‑1
  GCTGGCCTGGCGATATCTCAGGCCAGCCATTGGTG              <  1:5552631/35‑1
   CTGGCCTGGCGATATCTCAGGCCAGCCATTGGTGG             >  1:9844102/1‑35
   CTGGCCTGGCGATATCTCAGGCCAGCCATTGGTGG             >  1:15970300/1‑35
   CTGGCCTGGCGATATCTCAGGCCAGCCATTGGTGG             >  1:15308802/1‑35
    TGGCCTGGCGATATCTCAGGCCAGCCATTGGTGGG            >  1:17105971/1‑35
    TGGCCTGGCGATATCTCAGGCCAGCCATTGGTGGG            >  1:6165689/1‑35
     GGCCTGGCGATATCTCAGGCCAGCCATTGGTGGGG           >  1:7738155/1‑35
      GCCTGGCGATATCTCAGGCCAGCCATTGGTGGGGG          >  1:7553621/1‑35
       CCTGGCGATATCTCAGGCCAGCCATTGGTGGGGGg         >  1:609670/1‑34
       CCTGGCGATATCTCAGGCCAGCCATTGGTGGGGGT         >  1:16092292/1‑35
        CTGGCGATATCTCAGGCCAGCCATTGGTGGGGGTT        >  1:942740/1‑35
         TGGCGATATCTCAGGCCAGCCATTGGTGGGGGTTT       >  1:146038/1‑35
         TGGCGATATCTCAGGCCAGCCATTGGTGGGGGGTT       >  1:13956717/1‑35
          GGCGATATCTCAGGCCAGCCATTGGTGGGGGTTTT      >  1:1414326/1‑35
           GCGATATCTCAGGCCAGCCATTGGTGGGGGTTTTT     >  1:9220986/1‑35
            CGATATCTCAGGCCAGCCATTGGTGGGGGTTTTTT    >  1:7959438/1‑35
             GATATCTCAGGCCAGCCATTGGTGGGGGTTTTTT  >  1:15943169/1‑34
             GATATCTCAGGCCAGCCATTGGTGGGGGTTTTTTT   >  1:475245/1‑35
             GATATCTCAGGCCAGCCATTGGTGGGGGTTTTATT   >  1:3264642/1‑35
              ATATCTCAGGCCAGCCATTGGTGGGGTTTTTTTTT  >  1:10162136/1‑35
              ATATCTCAGGCCAGCCATTGGTGGGGGTTTTTTgt  >  1:20319346/1‑33
              ATATCTCAGGCCAGCCATTGGTGGGGGTTTTTTgt  >  1:10079397/1‑33
                                                 
AGGCTGGCCTGGCGATATCTCAGGCCAGCCATTGGTGG‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1593060‑1593097
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggGGGTTTTTTTT  >  REL606/4085859‑4085869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.