New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1306329 =80 (0.780)14 (0.190) 4/34 NT 22.1% intergenic (‑90/+281) cls/kch cardiolipin synthetase/voltage‑gated potassium channel
?REL606 = 3839377 42 (0.580)coding (1104/2415 nt) gyrB DNA gyrase subunit B

Only 100 of 298 total aligned reads displayed.

CTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGCGGGGGTATAATGACCATTCT  >  REL606/1306295‑1306359
                                  |                              
tgcagcatcgataattttgccaaccacgattttcg                                >  1:16261348‑M1/35‑35 (MQ=255)
ggcagcatcgataattttgccaaccacgattttcg                                <  1:16852067‑M1/1‑1 (MQ=255)
ggcagcatcgataattttgccaaccacgattttcg                                >  1:662487‑M1/35‑35 (MQ=255)
cgcacatcatacaccaaatgcaccagcctttTCAg                                >  1:14150806‑M1/32‑35 (MQ=255)
cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAg                                <  1:15308929/35‑1 (MQ=255)
 tGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGc                               <  1:13327805/35‑1 (MQ=255)
 tGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGc                               <  1:19762784/35‑1 (MQ=255)
 tGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGc                               <  1:3862686/35‑1 (MQ=255)
 gcagcatcgataattttgccaaccacgattttcgc                               <  1:20056396‑M1/2‑1 (MQ=255)
 gcagcatcgataattttgccaaccacgattttcgc                               <  1:3213306‑M1/2‑1 (MQ=255)
 gcagcatcgataattttgccaaccacgattttcgc                               <  1:11478283‑M1/2‑1 (MQ=255)
 gcagcatcgataattttgccaaccacgattttcgc                               <  1:5616079‑M1/2‑1 (MQ=255)
 gcagcatcgataattttgccaaccacgattttcgc                               <  1:6143029‑M1/2‑1 (MQ=255)
 gcaccatcgataattttgccaaccacgattttcgc                               >  1:19572273‑M1/34‑35 (MQ=255)
 gcacatcatacaccaaatgcaccagcctttTCAGc                               >  1:2902803‑M1/31‑35 (MQ=255)
 gcacatcatacaccaaatgcaccagcctttTCAGc                               >  1:11029556‑M1/31‑35 (MQ=255)
 gcacatcatacaccaaatgcaccagcctttTCAGc                               <  1:14908225‑M1/5‑1 (MQ=255)
 gcacatcatacaccaaatgcaccagcctttTCAGc                               >  1:13161140‑M1/31‑35 (MQ=255)
 caaagaacagcccctggataaacttgctctcCAGc                               <  1:12894880‑M1/4‑1 (MQ=255)
  ggCAAATAAAAACGCGGGAAAAGCACTGGTCAGCg                              <  1:13556982/35‑1 (MQ=255)
  ggCAAATAAAAACGCGGGAAAAGCACTGGTCAGCg                              >  1:17275964/1‑35 (MQ=255)
  cagcatggataattttgccaaccacgattttcgcg                              >  1:6330722‑M1/33‑35 (MQ=255)
  cagcatcgataattttgccaaccacgattttcgcg                              >  1:10159023‑M1/33‑35 (MQ=255)
  cagcatcgataattttgccaaccacgattttcgcg                              >  1:9343872‑M1/33‑35 (MQ=255)
  cacatcatacaccaaatgcaccagcctttTCAGCg                              >  1:12383721‑M1/30‑35 (MQ=255)
  cacatcatacaccaaatgcaccagcctttTCAGCg                              <  1:16540506‑M1/6‑1 (MQ=255)
  aaagcacagcccctggataaacttgctctcCAGCg                              <  1:5788795‑M1/5‑1 (MQ=255)
   gCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGt                             <  1:20129171/35‑1 (MQ=255)
   agcatcgataattttgcgaaccacgattttcGCGt                             >  1:19927966‑M1/32‑35 (MQ=255)
   agcatcgataattttgccaaccacgattttcGCGt                             <  1:2551552‑M1/4‑1 (MQ=255)
   acatcatactccaaatgcaccagcctttTCAGCGt                             <  1:15609913‑M1/7‑1 (MQ=255)
   acatcatacaccaaatgcaccagcctttTCAGCGt                             <  1:18275543‑M1/7‑1 (MQ=255)
   acatcatacaccaaatgcaccagcctttTCAGCGt                             <  1:10092681‑M1/7‑1 (MQ=255)
    cAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTc                            <  1:2653047/35‑1 (MQ=255)
    agaacagcccctggataaacttgctctcCAGCGTc                            <  1:4581970‑M1/7‑1 (MQ=255)
    agaacagcccctggataaacttgctctcCAGCGTc                            <  1:3054985‑M1/7‑1 (MQ=255)
    agaacagcccctggataaacttgctctcCAGCGTc                            <  1:7032122‑M1/7‑1 (MQ=255)
     gaacagcccctggataaacttgctctcCAGCGTcg                           <  1:2046542‑M1/8‑1 (MQ=255)
     atcatacaccaaatgcaccagcctttTCAGCGTcg                           <  1:15361005‑M1/9‑1 (MQ=255)
     atcatacaccaaatgcaccagcctttTCAGCGTcg                           >  1:6378456‑M1/27‑35 (MQ=255)
     aaaTAAAAACGCGGGAAAAGCACTGGTCAGCGTcg                           <  1:11226190/35‑1 (MQ=255)
     aaaTAAAAACGCGGGAAAAGCACTGGTCAGCGTcg                           <  1:5271978/35‑1 (MQ=255)
      tcatacaccaaatgcaccagcctttTCAGCgtctg                          <  1:13382392‑M1/10‑3 (MQ=255)
      tcatacaccaaatgcaccagcctttTCAGCGTcgg                          <  1:16423013‑M1/10‑1 (MQ=255)
      aacagcccctggataaacttgctctcCAGCGTcgg                          <  1:750125‑M1/9‑1 (MQ=255)
      aacagcccctggataaacttgctctcCAGCGTcgg                          <  1:4270302‑M1/9‑1 (MQ=255)
      aaTAAAAACGCGGGAAAAGCACTGGTCAGCGTcgg                          <  1:10634780/35‑1 (MQ=255)
      aaTAAAAACGCGGGAAAAGCACTGGTCAGCGTcgg                          <  1:19485758/35‑1 (MQ=255)
       tcgataattttgccaaccacgattttcGcgtctgg                         <  1:11600657‑M1/8‑4 (MQ=255)
       aTAAAAACGCGGGAAAAGCACTGGTCAGCGTcggg                         >  1:12035878/1‑35 (MQ=255)
       aTAAAAACGCGGGAAAAGCACTGGTCAGCGTcggg                         >  1:10718072/1‑35 (MQ=255)
       aTAAAAACGCGGGAAAAGCACTGGTCAGCGTcggg                         >  1:15910464/1‑35 (MQ=255)
        cgataattttgccaaccacgattttcGCGTcgggg                        <  1:5132009‑M1/9‑1 (MQ=255)
        cagcccctggataaacttgctctcCAGCGTcgggg                        <  1:1820504‑M1/11‑1 (MQ=255)
         agccccttgataaacttgctctcCAGCGTcggggg                       <  1:10288919‑M1/12‑1 (MQ=255)
         agcccctggataaacctgctctcCAGCGTcggggg                       <  1:6770817‑M1/12‑1 (MQ=255)
         aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggt                       >  1:2269612/1‑34 (MQ=255)
         aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggg                       >  1:3685548/1‑35 (MQ=255)
         aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggg                       <  1:8365631/35‑1 (MQ=255)
         aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggg                       >  1:9571039/1‑35 (MQ=255)
         aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggg                       >  1:14483045/1‑35 (MQ=255)
          gcccctggataaacttgctctcCAGCGtcgggggg                      <  1:20092454‑M1/13‑2 (MQ=255)
          gcccctggataaacttgctctcCAGCGtcgggggg                      <  1:7062122‑M1/13‑2 (MQ=255)
          ataattttgccaaccacgattttcGCGtcgggggg                      <  1:16377498‑M1/11‑2 (MQ=255)
          ataattttgccaaccacgattttcGCGtcgggggg                      <  1:8568513‑M1/11‑2 (MQ=255)
          ataattttgccaaccacgattttcGCGtcgggggg                      <  1:18671535‑M1/11‑2 (MQ=255)
           cccctggataaacttgctctcCAGCgtcggggggg                     <  1:17674231‑M1/14‑3 (MQ=255)
            ccctggataaacttgctctcCAGcgtcgggggggg                    <  1:6541698‑M1/15‑4 (MQ=255)
            accaaatgcaccagcctttTCAGcgtcgggggggg                    <  1:17395240‑M1/16‑4 (MQ=255)
            aattttgccaaccacgattttcGcgtcgggggggg                    <  1:18781573‑M1/13‑4 (MQ=255)
            aaCGCGGGAAAAGCACTGGTCAGCGTcgggggcgg                    >  1:5020385/1‑35 (MQ=255)
             ccaaatgcaccagcctttTCAGCGTcggggggggg                   <  1:20593097‑M1/17‑1 (MQ=255)
             ccaaatgcaccagcctttTCAGCGTcggggggggg                   <  1:17894124‑M1/17‑1 (MQ=255)
             attttgccaaccacgattttcGCGTcggggggggg                   <  1:10434952‑M1/14‑1 (MQ=255)
             attttgccaaccacgattttcGCGTcggggggggg                   <  1:4952202‑M1/14‑1 (MQ=255)
             aCGCGGGAAAAGCACTGGTCAGCGTcgggggcggg                   <  1:7654821/35‑1 (MQ=255)
             aCGCGGGAAAAGCACTGGTCAGCGTcgggggcggg                   <  1:5425988/35‑1 (MQ=255)
             aCGCGGGAAAAGCACTGGTCAGCGTcgggggcggg                   <  1:19245348/35‑1 (MQ=255)
              ttttgccaaccacgattttcGCGtcgggggggggt                  <  1:2148225‑M1/15‑2 (MQ=255)
              ttttgccaaccacgattttcGCGTcgggggggggg                  <  1:14713936‑M1/15‑1 (MQ=255)
              ttttgccaaccacgattttcGCGTcgggggggggg                  <  1:19819937‑M1/15‑1 (MQ=255)
              ctggataaacttgctctcCAGCGTcgggggggggg                  <  1:10799009‑M1/17‑1 (MQ=255)
              cgcgGGAAAAGCACTGGTCAGCGTcgggggcgggg                  <  1:14448949/35‑1 (MQ=255)
              cgcgGGAAAAGCACTGGTCAGAGTcgggggcgggg                  <  1:3516590/35‑1 (MQ=255)
              caaatgcaccagcctttTCAGCGTcgggggggggg                  <  1:8994798‑M1/18‑1 (MQ=255)
               tttgccaaccacgattttcGCGtcggggggggggt                 <  1:19099097‑M1/16‑2 (MQ=255)
               tttgccaaccacgattttcGCGTcggggggggggg                 <  1:4094026‑M1/16‑1 (MQ=255)
               tttgccaaccacgattttcGCGTcggggggggggg                 <  1:7278522‑M1/16‑1 (MQ=255)
               aaatgcaccagcctttTCAGCGTcggggggggggg                 <  1:6445589‑M1/19‑1 (MQ=255)
                cgGGAAAAGCACTGGTCAGCGTcgggggcgggggg                >  1:11529836/1‑34 (MQ=255)
                aatgcaccagcctttTCAGCGtcgggggtgggggg                <  1:13009705‑M1/20‑2 (MQ=255)
                  ggAAAAGCACTGGTCAGCGTCGGGGGCGGGGGgat              >  1:8100089/1‑35 (MQ=255)
                   gAAAAGCACTGGTCAGCGTCGGGGGCGGGGGtata             <  1:19177848/35‑1 (MQ=255)
                   gAAAAGCACTGGTCAGCGTCGGGGGCGGGGGgata             >  1:8201132/1‑35 (MQ=255)
                    aaaaGCACTGGTCAGCGTCGGGGGCGGGGGTATaa            <  1:16690718/35‑1 (MQ=255)
                    aaaaGCACTGGTCAGCGTCGGGGGCGGGGGGATaa            >  1:7918355/1‑35 (MQ=255)
                     aaaGCACTGGTCAGCGTCGGGGGCGGGGGGATAAt           >  1:9166935/1‑35 (MQ=255)
                        gCACTGGTCAGCGTCGGGGGCGGGGGTATAATGAc        <  1:12684086/35‑1 (MQ=255)
                           cTGGTCAGCGTCGGGGGCGGGGGTATAATGACCAt     >  1:11714167/1‑35 (MQ=255)
                              gTCAGCGTCGGGGGCGGGGGTATAATGAACAtttt  >  1:15755710/1‑33 (MQ=38)
                                  |                              
CTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGCGGGGGTATAATGACCATTCT  >  REL606/1306295‑1306359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.