New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 4085856 =100 (0.970)24 (0.250) 5/44 NT 23.2% intergenic (+54/‑95) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F
?REL606 4214283 = 67 (0.710)coding (1595/1650 nt) pgi glucose‑6‑phosphate isomerase

GATAAAAAAAACCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/4085872‑4085856
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGCCACGATAGCTCGACCAATGGTCTGATTAACCG  >  REL606/4214283‑4214316
                                                   
aaaAAAAAAAACCCCCAGCCACGATAGCTCGACCA                  <  1:14650465/32‑1
 aaAAAAAAAACCCCCAGCCACGATAGCTCGACCAA                 <  1:14417619/33‑1
 aaAAAAAAAACCCCCAGCCACGATAGCTCGACCAA                 <  1:11125523/33‑1
  atAAAAAAACCCCCAGCCACGATAGCTCGACCAAT                <  1:20308495/33‑1
  aAAAAGAAACCCCCAGCCACGATAGCTCGACCAAT                <  1:4561742/34‑1
  aAAAAAAAACCCCCAGCCACGATAGCTCGACCAAT                <  1:6242381/34‑1
  aAAAAAAAACCCCCAGCCACGATAGCTCGACCAAT                <  1:16486149/34‑1
  aAAAAAAAACCACCAGCCACGATAGCTCGACCAAT                <  1:5490673/34‑1
   tAAAAAAATCCCCAGCCACGATAGCTCGACCAATG               <  1:12278591/34‑1
   AAAAAAAACCCCCAGCCACGATAGCTCGACCAATG               <  1:11234372/35‑1
   AAAAAAAACCCCCAGCCACGATAGCTCGACCAATG               <  1:9571317/35‑1
   AAAAAAAACCCCCAGCCACGATAGCTCGACCAATG               <  1:7855256/35‑1
   AAAAAAAACCACCAGCCACGATAGCTCGACCAATG               <  1:20446137/35‑1
   AAAAAAAACCACCAGCCACGATAGCTCGACCAATG               <  1:15385062/35‑1
    AAAAAACCCCCCAGCCACGATAGCTCGACCAATGG              <  1:18818946/35‑1
    AAAAAAACCCCCAGCCACGATAGCTCGACCAATGG              <  1:2118457/35‑1
    AAAAAAACCCCCAGCCACGATAGCTCGACCAATGG              <  1:12154751/35‑1
    AAAAAAACCACCAGCCACGATAGCTCGACCAATGG              <  1:10149824/35‑1
       AAAACCCCCAGCCACGATAGCTCGACCAATGGTCT           <  1:20032548/35‑1
        AAACCCCCAGCCACGATAGCTCGACCAATGGTCTG          <  1:15158048/35‑1
         acCCCCCAGCCACGATAGCTCGACCAATGGTCTGA         <  1:2156478/33‑1
         AACCCCCAGCCACGATAGCTCGACCAATGGTCTGA         <  1:8010719/35‑1
         AACCCCCAGCCACGATAGCTCGACCAATGGTCTGA         <  1:9177471/35‑1
         AACCCCCAGCCACGATAGCTCGACCAATGGTCTGA         <  1:14000037/35‑1
         AACCCCCAGCCACGATAGCTCGACCAATGGTCTGA         <  1:6851947/35‑1
           gCCCCAGCCACGATAGCTCGACCAATGGTCTGATT       <  1:11703544/34‑1
            CCCCAGCCACGATAGCTCGACCAATGGTCTGATTA      <  1:7914919/35‑1
            CCCCAGCCACGATAGCTCGACCAATGGTCTGATTA      <  1:15677561/35‑1
            CCCCAGCCACGATAGCTCGACCAATGGTCTGATTA      <  1:9589721/35‑1
             aCCAGCCACGATAGCTCGACCAATGGTCTGATTAA     <  1:15416521/34‑1
             CCCAGCCACGATAGCTCGACCAATGGTCTGATTAA     <  1:18781774/35‑1
             CCCAGCCACGATAGCTCGACCAATGGTCTGATTAA     <  1:16986395/35‑1
              ctAGCCACGATAGCTCGACCAATGGTCTGATTAAC    <  1:661409/33‑1
              CCAGCCACGATAGCTCGGCCAATGGTCTGATTAAC    <  1:8952963/35‑1
              CCAGCCACGATAGCTCGACCAATGGTCTGATTAAC    <  1:19929136/35‑1
              CCAGCCACGATAGCTCGACCAATGGTCTGATTAAC    <  1:17580807/35‑1
              CCAGCCACGATAGCTCGACCAATGGTCTGATTAAC    <  1:15435378/35‑1
              CCAGCCACGATAGCTCGACCAATGGTCTGATTAAC    <  1:11245895/35‑1
              CCAGCCACGATAGCTCGACCAATGGTCTGATTAAC    <  1:10238223/35‑1
              CCAGCCACGATAGCTCGACCAATGGTCTGATTAAC    <  1:6552748/35‑1
               CAGCCACGATAGCTCGACCAATGGTCTGATTAACC   <  1:9732069/35‑1
               CAGCCACGATAGCTCGACCAATGGTCTGATTAACC   >  1:264802/1‑35
               CAGCCACGATAGCTCGACCAATGGTCTGATTAACC   <  1:18671073/35‑1
               CAGCCACGATAGCTCGACCAATGGTCTGATTAACC   <  1:16384973/35‑1
               CAGCCACGATAGCTCGACCAATGGTCTGATTAACC   <  1:12804321/35‑1
                AGCCACGATAGCTCGGCCAATGGTCTGATTAACCG  >  1:1002665/1‑35
                AGCCACGATAGCTCGACCAATGGTCTGATTAACCG  <  1:7752239/35‑1
                AGCCACGATAGCTCGACCAATGGTCTGATTAACCG  <  1:5280031/35‑1
                AGCCACGATAGCTCGACCAATGGTCTGATTAACCG  >  1:7940061/1‑35
                AGCCACGATAGCTCGACCAATGGTCTGATTAACCG  <  1:17856009/35‑1
                AGCCACGATAGCTCGACAAATGGTCTGATTAACCG  <  1:6291614/35‑1
                                                   
GATAAAAAAAACCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/4085872‑4085856
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGCCACGATAGCTCGACCAATGGTCTGATTAACCG  >  REL606/4214283‑4214316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.