New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1534318 = | 71 (0.690) | 12 (0.150) | 4/38 | NT | 24.9% | coding (550/1023 nt) | yddR | D‑ala‑D‑ala transporter subunit |
? | REL606 | = 2036370 | 16 (0.200) | coding (589/1113 nt) | wbbC | putative glycosyltransferase WbbC |
Only 100 of 124 total aligned reads displayed.
TCACCGTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATCCAGCCAG > REL606/1534284‑1534352 | tCACCGTTGCCTTCAAGCAGCGCATCGAGCAGATa > 1:4190406/1‑35 (MQ=255) tCACCGTTGCCTTCAAGCAGCGCATCGAGCAGATa > 1:10821208/1‑35 (MQ=255) tCACCGTTGCCTTCAAGCAGCGCATCGAGCAGATa > 1:6089614/1‑35 (MQ=255) gtttatcttcatgcaaagcacccaccgagaaaaaa < 1:17396908‑M1/1‑1 (MQ=255) cACCGTTGCCTTCAAGCAGCGCATCGAGCAGATaa < 1:18574973/35‑1 (MQ=255) cACCGTTGCCTTCAAGCAGCGCATCGAGCAGATaa < 1:8682264/35‑1 (MQ=255) cACCGTTGCCTTCAAGCAGCGCATCGAGCAGATaa > 1:1119188/1‑35 (MQ=255) aCCGTTGCCTTCAAGCAGCGCATCGAGCAGATaaa > 1:1168403/1‑35 (MQ=255) ccGTTGCCTTCAAGCAGCGCATCGAGCAGATaaaa < 1:8724956/35‑1 (MQ=255) ccGTTGCCTTCAAGCAGCGCATCGAGCAGATaaaa < 1:16556964/35‑1 (MQ=255) cGTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAg > 1:13989182/1‑35 (MQ=255) cGTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAg > 1:12277326/1‑35 (MQ=255) cGTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAg > 1:8890214/1‑35 (MQ=255) cGTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAg > 1:1504913/1‑35 (MQ=255) gTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGc > 1:11464603/1‑35 (MQ=255) gTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGc < 1:14988503/35‑1 (MQ=255) gTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGc < 1:11944664/35‑1 (MQ=255) gTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGc > 1:1048451/1‑35 (MQ=255) gTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGc < 1:19541597/35‑1 (MQ=255) ttGCCTTCAAGCAGCGCATCGAGCAGATAAAAGcc < 1:12669773/35‑1 (MQ=255) ttGCCTTCAAGCAGCGCATCGAGCAGATAAAAGcc > 1:5712544/1‑35 (MQ=255) ttGCCTTCAAGCAGCGCATCGAGCAGATAAAAGcc > 1:1357595/1‑35 (MQ=255) ttGCCTTCAAGCAGCGCATCGAGCAGATAAAAGcc < 1:3275847/35‑1 (MQ=255) ttGCCTTCAAGCAGCGCATCGAGCAGATAAAAGcc < 1:559687/35‑1 (MQ=255) tGCCTTCAAGCAGCGCATCGAGCAGATAAAAGCCg > 1:5189886/1‑35 (MQ=255) gCCTTCAAGCAGCGCATCGAGCAGATAAAAGCCgg > 1:16271513/1‑35 (MQ=255) gCCTTCAAGCAGCGCATCGAGCAGATAAAAGCCgg < 1:16798210/35‑1 (MQ=255) gCCTTCAAGCAGCGCATCGAGCAGATAAAAGCCgg < 1:252084/35‑1 (MQ=255) ccTTCAAGCAGCGCATCGAGCATATAAAAGCCGGt > 1:8388437/1‑35 (MQ=255) ccTTCAAGCAGCGCATCGAGCATATAAAAGCCGGt > 1:7549092/1‑35 (MQ=255) cTTCAAGCAGCGCATCGAGCAGATAAAAGCCGGTa > 1:20354011/1‑35 (MQ=255) ttCAAGCAGCGCATCGAGCAGATAAAAGCCGGTaa > 1:19437405/1‑35 (MQ=255) cAAGCAGCGCATCGAGCAGATAAAAGCCGGTAACg > 1:16540015/1‑35 (MQ=255) cAAGCAGCGCATCGAGCAGATAAAAGCCGGTAACg > 1:10146965/1‑35 (MQ=255) cAAGCAGCGCATCGAGCAGATAAAAGCCGGTAACg > 1:18374477/1‑35 (MQ=255) aaGCAGCGCATCGAGCAGATAAAAGCCGGTAACGt > 1:8249816/1‑35 (MQ=255) aaGCAGCGCATCGAGCAGATAAAAGCCGGTAACGt > 1:4047999/1‑35 (MQ=255) agcagcGCATCGAGCAGATAAAAGCCGGTAACTTg > 1:6360808/1‑35 (MQ=255) agcagcGCATCGAGCAGATAAAAGCCGGTAACGTg > 1:14606907/1‑35 (MQ=255) agcagcGCATCGAGCAGATAAAAGCCGGTAACGTg > 1:5136230/1‑35 (MQ=255) agcagcGCATCGAGCAGATAAAAGCCGGTAACGTg > 1:19448764/1‑35 (MQ=255) agcagcGCATCGAGCAGATAAAAGCAGGTAACGTg < 1:7625161/35‑1 (MQ=255) cagcGCATCGAGCAGATAAAAGCCGGTAACGTGCg > 1:595663/1‑35 (MQ=255) cagcGCATCGAGCAGATAAAAGCCGGTAACGTGCg > 1:14122776/1‑35 (MQ=255) ggcgcATGGAGAAAAAAAAAGCCGGTAACGTGCGt < 1:12744973/34‑1 (MQ=12) agcGCATCGAGCAGATAAAAGCCGGTAACGTGCGt > 1:17247867/1‑35 (MQ=255) agcGCATCGAGCAGATAAAAGCCGGTAACGTGCGt > 1:4921042/1‑35 (MQ=255) agcGCATCGAGCAGATAAAAGCCGGTAACGTGCGt > 1:11361002/1‑35 (MQ=255) gcgcATCGAGCAGATAAAAGCCGGTAACGTGCGtt > 1:6092542/1‑35 (MQ=255) gcgcATCGAGCAGATAAAAGCCGGTAACGTGCGtt > 1:15396349/1‑35 (MQ=255) gcagcgagaaaaaAAAAGCCGGTAACGTGCGTtgg > 1:7319422‑M1/14‑35 (MQ=255) gcaccaagaaaaaAAAAGCCGGTAACGTGCGTtgg > 1:14878415‑M1/14‑35 (MQ=255) gcaacgagaaaaaAAAAGCCGGTAACGTGCGTtgg > 1:7796676‑M1/14‑35 (MQ=255) gcATCGAGCAGATAAAAGCCGGTAACGTGCGTtgg > 1:18528426/1‑35 (MQ=255) gcATCGAGCAGATAAAAGCCGGTAACGTGCGTtgg > 1:5186664/1‑35 (MQ=255) gcATCGAGCAGATAAAAGCCGGTAACGTGCGTtgg > 1:11330444/1‑35 (MQ=255) cATCGAGCAGATAAAAGCCGGTAACGTGCGTtggt > 1:20482365/1‑35 (MQ=255) accgaaaaaaaAAAAGCCGGTAACGTGCGTtggtg > 1:3454113‑M1/12‑35 (MQ=255) aTCGAGCAGATAAAAGCCGGTAACGTGCGTtggtg > 1:14073414/1‑35 (MQ=255) tCGAGCAGATAAAAGCCGGTTACGTGCGTtggtgg < 1:1489322/35‑1 (MQ=255) tCGAGCAGATAAAAGCCGGTAACGTGCGTtggtgg > 1:15517431/1‑35 (MQ=255) tCGAGCAGATAAAAGCCGGTAACGTGCGTtggtgg > 1:13318026/1‑35 (MQ=255) gcgaaaaaaaAAAAGCCGGTAACGTGCGTtggtgg > 1:16611306‑M1/11‑35 (MQ=255) ggagaaaaaAAAAGCCGGTAACGTGCGTTGGTGGa > 1:13390894‑M1/10‑35 (MQ=255) cgagaaaaaAAAAGCCGGTAACGTGCGTTGGTGGa > 1:8514367‑M1/10‑35 (MQ=255) cGAGCAGATAAAAGCCGGTAACGTGCGTTGGTGGa > 1:3237994/1‑35 (MQ=255) cGAGCAGATAAAAGCCGGTAACGTGCGTTGGTGGa > 1:19220256/1‑35 (MQ=255) cGAGCAGATAAAAGCCGGTAACGTGCGTTGGTGGa > 1:13503307/1‑35 (MQ=255) cGAGCAGATAAAAGACGGTAACGTGCGTTGGTGGa < 1:18535640/35‑1 (MQ=255) gAGCAGATAAAAGCCGGTAACGGGCGTTGGTGGAt > 1:18440963/1‑35 (MQ=255) aagaaaaaAAAAGCCGGTAACGTGCGTTGGTGGAt > 1:5416206‑M1/9‑35 (MQ=255) agaaaaaAAAAGCCGGTAACGTGCGTTGGTGGATc > 1:5664242‑M1/8‑35 (MQ=255) agaaaaaAAAAGCCGGTAACGTGCGTTGGTGGATc > 1:14162110‑M1/8‑35 (MQ=255) aGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATc > 1:7574045/1‑35 (MQ=255) aGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATc > 1:9577740/1‑35 (MQ=255) aGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATc > 1:11210317/1‑35 (MQ=255) aGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATc > 1:14670310/1‑35 (MQ=255) aGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATc > 1:19880852/1‑35 (MQ=255) aGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATc > 1:20537801/1‑35 (MQ=255) gaaaaaAAAAGCCGGTAACGTGCGTTGGTGGATcc > 1:18963262‑M1/7‑35 (MQ=255) gCAGATAAAAGCCGGTAACGTGCGTTTGTGGATcc > 1:11306767/1‑35 (MQ=255) cAGATAAAAGCCGGTAACGTGCGTTGGTGGATcca > 1:14188385/1‑35 (MQ=255) cAGATAAAAGCCGGTAACGTGCGTTGGTGGATcca > 1:14680730/1‑35 (MQ=255) cAGATAAAAGCCGGTAACGTGCGTTGGTGGATcca > 1:4540429/1‑35 (MQ=255) cAGATAAAAGCCGGTAACGTGCGTTGGTGGATcca > 1:11340583/1‑35 (MQ=255) cAGATAAAAGCCGGTAACGTGCGTTGGTGGATaca > 1:10413198/1‑35 (MQ=255) aaaaAAAAGCCGGTAACGTGCGTTGGTGGATccag > 1:8961321‑M1/5‑35 (MQ=255) aaaaAAAAGCCGGTAACGTGCGTTGGTGGATccag > 1:9761052‑M1/5‑35 (MQ=255) aGATAAAAGCCGGTAACGTGCGTTGGTGGATccag > 1:4552331/1‑35 (MQ=255) gATAAAAGCCGGTAACGTGCGTTGGTGGATccagc > 1:9611097/1‑35 (MQ=255) gATAAAAGCCGGTAACGTGCGTTGGTGGATccagc > 1:9675731/1‑35 (MQ=255) aaaAAAAGCCGGTAACGTGCGTTGGTGGATccagc > 1:12339290‑M1/4‑35 (MQ=255) aaAAAAGCCGGTAACGTGCGTTGGTGGATccagcc > 1:8274339‑M1/3‑35 (MQ=255) aTAAAAGCCGGTAACGTGCGTTGGTGGATccagcc > 1:1954653/1‑35 (MQ=255) aAAAAGCCGGTAACGTGCGTTGGTGGATccagcca > 1:15980558‑M1/2‑35 (MQ=255) aAAAAGCCGGTAACGTGCGTTGGTGGATccagcca > 1:11059650‑M1/2‑35 (MQ=255) AAAAGCCGGTAACGTGCGTTGGTGGATccagccag > 1:14934902‑M1/1‑35 (MQ=255) AAAAGCCGGTAACGTGCGTTGGTGGATccagccag < 1:11678990‑M1/35‑1 (MQ=255) AAAAGCCGGTAACGTGCGTTGGTGGATccagccag < 1:11124186‑M1/35‑1 (MQ=255) AAAAGCCGGTAACGTGCGTTGGTGGATccagccag > 1:10111997‑M1/1‑35 (MQ=255) | TCACCGTTGCCTTCAAGCAGCGCATCGAGCAGATAAAAGCCGGTAACGTGCGTTGGTGGATCCAGCCAG > REL606/1534284‑1534352 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |