New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3809862 = | 86 (0.840) | 7 (0.100) | 4/34 | NT | 8.2% | coding (207/1503 nt) | uhpB | sensory histidine kinase in two‑component regulatory sytem with UhpA |
? | REL606 | 3882315 = | 96 (1.320) | coding (103/816 nt) | atpB | F0F1 ATP synthase subunit A |
GCGCGGATACTGGCCGGTGCTGCTGGGCGCGGAGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3809901‑3809862 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggctgGGGGGTTTTGTGGA > REL606/3882315‑3882328 GCGCGGATACTGGCCGGTGCTGCTGGGCGCGGAGT < 1:9441669/35‑1 nGCGGATACTGGCCGGTGCTGCTGGGCGCGGAGTG < 1:7398537/34‑1 CGCGGATTCTGGCCGGTGCTGCTGGGCGCGGAGTG < 1:19386055/35‑1 CGCGGATACTGGCCGGTGCTGCTGGGCGCGGAGTG < 1:10492491/35‑1 CGCGGATACTGGCCGGTGCTGCTGGGCGCGGAGTG < 1:10917132/35‑1 CGCGGATACTGGCCGGTGCTGCTGGGCGCGGAGTG < 1:19902757/35‑1 GCGGATACTGGCCTGTGCTGCTGGGCGCGGAGTGG > 1:14573148/1‑35 GCGGATACTGGCAGGTGCTGCTGGGCGCGGAGTGG < 1:12325232/35‑1 CGGATACTGGCCGGTGCTGCTGGGCGCGGAGTGGC < 1:15070948/35‑1 GGATACTGGCCGGTGCTGCTGGGCGCGGAGTGGCT < 1:8600766/35‑1 GGATACTGGCCGGTGCTGCTGGGCGCGGAGGGGCT > 1:11123580/1‑35 TACTGGCCGGTGCTGCTGGGCGCGGGGTGGCTGGG > 1:5829660/1‑35 TACTGGCCGGTGCTGCTGGGCGCGGGGTGGCTGGG > 1:10257085/1‑35 TGGCCGGTGCTGCTGGGCGCGGAGTGGCTGGGGGG > 1:2498400/1‑35 TGGCCGGTGCTGCTGGGCGCGGAGTGGCTGGGGGG > 1:14259775/1‑35 TGGCCGGTGCTGCTGGGCGCGGAGTGGCTGGGGGG > 1:9302866/1‑35 GGCCGGTGCTGCTGGGCGCGGAGTGGCTGGGGGGT > 1:7619774/1‑35 GCCGGTGCTGCTGGGCGCGGAGTGGCTGGGGGTTT > 1:11936483/1‑35 CCGGTGCTGCTGGGCGCGGAGTGGCTGGGGGGTTT > 1:16493296/1‑35 CCGGTGCTGCTGGGCGCGGAGTGGCTGGGGGGTTT > 1:5036265/1‑35 GGTGCTGCTGGGCGCGGAGTGGCTGGGGGGGTTTc > 1:5542116/1‑34 GCTGCTGGGCGCGGAGTGGCTGGGGGGTTTTTTGG > 1:1683037/1‑35 CTGCTGGGCGCGGAGTGGCTGGGGGGTTTTTTGGt > 1:15075308/1‑34 GCGCGGATACTGGCCGGTGCTGCTGGGCGCGGAGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3809901‑3809862 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggctgGGGGGTTTTGTGGA > REL606/3882315‑3882328 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |