New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 285065 =85 (0.830)8 (0.120) 3/30 NT 14.3% coding (529/4257 nt) eaeH attaching and effacing protein, pathogenesis factor
?REL606 = 3978905 43 (0.670)coding (1426/2262 nt) metE 5‑methyltetrahydropteroyltriglutamate‑ homocysteine methyltransferase

Only 100 of 200 total aligned reads displayed.

TATTGGTTTTGGCTGGCGTCATTTTTCAGGAAATGACTGGATGGCGGGGGTGAATACTTTTATCGATCA  >  REL606/285031‑285099
                                  |                                  
tatTGGTTTTGGCTGGCGTCATTTTTCAGGAAATg                                    <  1:16708403/35‑1 (MQ=255)
tatTGGTTTTGGCTGGCGTCATTTTTCAGGAAATg                                    <  1:3601410/35‑1 (MQ=255)
tatTGGTTTTGGCTGGCGTCATTTTTAAGGAAATg                                    <  1:4821659/35‑1 (MQ=255)
atcaagcaggccattgttgagcaggaacgtttggg                                    <  1:10119985‑M1/1‑1 (MQ=255)
atcaagcaggccattgttgagcaggaacgtttggg                                    <  1:3368843‑M1/1‑1 (MQ=255)
atcaagcaggccattgttgagcaggaacgtttggg                                    <  1:18584824‑M1/1‑1 (MQ=255)
atcaagcaggccattgttgagcaggaacgtttggg                                    >  1:15388579‑M1/35‑35 (MQ=255)
atcaagcaggccatcgttgagcaggaacgtttggg                                    <  1:286832‑M1/1‑1 (MQ=255)
 tcaagcaggccattgttgagcaggaacgttttgGa                                   <  1:4914183‑M1/2‑1 (MQ=255)
 tcaagcaggccattgttgagcaggaacgtttggGa                                   <  1:169447‑M1/2‑1 (MQ=255)
 tcaagcaggccattgttgagcaggaacgtttggGa                                   <  1:4477349‑M1/2‑1 (MQ=255)
 atTGGTTTTGGCTGGCGTCATTTTTCAGGAAATGa                                   <  1:14126579/35‑1 (MQ=255)
 atTGGTTTTGGCTGGCGTCATTTTTCAGGAAATGa                                   <  1:18040504/35‑1 (MQ=255)
 atTGGTTTTGGCTGGCGTCATTTTTCAGGAAATGa                                   <  1:17421243/35‑1 (MQ=255)
  ttGGTTTTGGCTGGCGTCATTTTTCAGGAAATGAc                                  <  1:6640029/35‑1 (MQ=255)
  caagcaggccattgttgagcaggaacgtttgtGAc                                  <  1:1823478‑M1/3‑1 (MQ=255)
  caagcaggccattgttgagcaggaacgtttggGAc                                  >  1:1434493‑M1/33‑35 (MQ=255)
  caagcaggccattgttgagcaggaacgtttggGAc                                  >  1:1456399‑M1/33‑35 (MQ=255)
  caagcaggccattgttgagcaggaacgtttggGAc                                  >  1:2146522‑M1/33‑35 (MQ=255)
   tGGTTTTGGCTGGCGTCATTTTTCAGGAAATGACt                                 <  1:10813239/35‑1 (MQ=255)
   tGGTTTTGGCTGGCGTCATTTTTCAGGAAATGACt                                 <  1:6245492/35‑1 (MQ=255)
   tGGTTTTGGCTGGCGTCATTTTTCAGGAAATGACt                                 <  1:1495775/35‑1 (MQ=255)
   aagcaggccattgttgagcaggaacgtttggGACt                                 <  1:864084‑M1/4‑1 (MQ=255)
   aagcaggccattgttgagcaggaacgtttggGACt                                 <  1:16180956‑M1/4‑1 (MQ=255)
   aagcaggccattgttgagcaggaacgtttggGACt                                 >  1:8254607‑M1/32‑35 (MQ=255)
   aagcaggccattgttgagcaggaacgtttggGACt                                 >  1:708563‑M1/32‑35 (MQ=255)
   aagcaggccattgttgagcaggaacgtttggGACt                                 >  1:12490915‑M1/32‑35 (MQ=255)
    agcaggccattgttgagcaggaacgtttggGACTg                                <  1:13744813‑M1/5‑1 (MQ=255)
    agcaggccattgttgagcaggaacgtttggGACTg                                <  1:15911780‑M1/5‑1 (MQ=255)
    agcaggccattgttgagcaggaacgtttggGACTg                                >  1:163780‑M1/31‑35 (MQ=255)
    agcaggccattgttgagcaggaacgtttggGACTg                                >  1:6681755‑M1/31‑35 (MQ=255)
    agcaggccattgttgagcaggaacgtttggGACTg                                >  1:9113318‑M1/31‑35 (MQ=255)
     gcaggccattgttgagcaggaacgtttggGACTgg                               <  1:12352770‑M1/6‑1 (MQ=255)
     gcaggccattgttgagcaggaacgtttggGACTgg                               >  1:1982808‑M1/30‑35 (MQ=255)
      caggccattgttgagcaggaacgtttggGActgag                              <  1:14735309‑M1/7‑3 (MQ=255)
      caggccattgttgagcaggaacgtttggGACTGGa                              <  1:17683769‑M1/7‑1 (MQ=255)
      caggccattgttgagcaggaacgtttggGACTGGa                              <  1:12631448‑M1/7‑1 (MQ=255)
      caggccattgttgagcaggaacgtttggGACTGGa                              <  1:7616638‑M1/7‑1 (MQ=255)
      caggccattgttgagcaggaacgttcggGACTGGa                              <  1:3794147‑M1/7‑1 (MQ=255)
       tttGGCTGGCGTCATTTTTCAGGAAATGACTGGAt                             <  1:15521441/35‑1 (MQ=255)
       aggccattgttgagcaggaacgtttggGACTGGAt                             <  1:7256263‑M1/8‑1 (MQ=255)
       aggccattgttgagcaggaacgtttggGACTGGAt                             <  1:9890969‑M1/8‑1 (MQ=255)
       aggccattgttgagcaggaacgtttggGACTGGAt                             >  1:19606032‑M1/28‑35 (MQ=255)
       aggccattgttgagcaggaacgtttggGACTGGAt                             >  1:13125035‑M1/28‑35 (MQ=255)
        ttGGCTGGCGTCATTTTTCAGGAAATGACTGGATg                            <  1:746157/35‑1 (MQ=255)
        ggccattgttgagcaggaacgttttgGACTGGATg                            <  1:6152178‑M1/9‑1 (MQ=255)
        ggccattgttgagcaggaacgtttggGACTGGATg                            >  1:12123272‑M1/27‑35 (MQ=255)
        ggccattgttgagcaggaacgtttggGACTGGATg                            >  1:18298167‑M1/27‑35 (MQ=255)
        ggccattgttgagcaggaacgtttggGACTGGATg                            >  1:7511369‑M1/27‑35 (MQ=255)
         gccattgttgagcaggaacgtttggGACTGGATgg                           <  1:15332343‑M1/10‑1 (MQ=255)
          ggctggcGTCATTTTTCAGGAAATGACTGGATGGc                          <  1:7059541/35‑1 (MQ=255)
          ccattgttgagcaggaacgtttggGACTGGAtggg                          <  1:5874702‑M1/11‑2 (MQ=255)
           gctggcGTCATTTTTCAGGAAATGACTGGATGGCg                         <  1:6895873/35‑1 (MQ=255)
           gctggcGTCATTTTTCAGGAAATGACTGGATGGCg                         <  1:1240913/35‑1 (MQ=255)
           gctggcGTCATTTTTCAGGAAATGACTGGATGGCg                         <  1:5971814/35‑1 (MQ=255)
           gctggcGTCATTTTTCAGGAAATGACTGGATGGCg                         <  1:836671/35‑1 (MQ=255)
           cattgttgagcaggaacgtttggGACTGGatgggg                         <  1:2266948‑M1/12‑3 (MQ=255)
            ctggcGTCATTTTTCAGGAAATGACTGGATGGCgg                        >  1:6653722/1‑35 (MQ=255)
            attgttgagcaggaacgtttggGACTGgatggggg                        <  1:1906697‑M1/13‑4 (MQ=255)
            attgttgagcaggaacgtttggGACTGgatggggg                        <  1:9254145‑M1/13‑4 (MQ=255)
            attgttgagcaggaacgtttggGACTGgatggggg                        <  1:3725135‑M1/13‑4 (MQ=255)
             tggcGTCATTTTTCAGGAAATGACTGGATGGCggg                       <  1:19231486/35‑1 (MQ=255)
             tggcGTCATTTTTCAGGAAATGACTGGATGGCggg                       <  1:6735799/35‑1 (MQ=255)
             tggcGTCATTTTTCAGGAAATGACTGGATGGCggg                       <  1:18807337/35‑1 (MQ=255)
             tggcGTCATTTTTCAGGAAATGACTGGATGGCggg                       >  1:13508891/1‑35 (MQ=255)
              ggcGTCATTTTTCAGGAAATGACTGGATGGCgggg                      >  1:20307974/1‑35 (MQ=255)
              ggcGTCATTTTTCAGGAAATGACTGGATGGCgggg                      >  1:2944977/1‑35 (MQ=255)
              ggcGTCATTTTTCAGGAAATGACTGGATGGCgggg                      >  1:11335740/1‑35 (MQ=255)
              ggcGTCATTTTTCAGGAAATGACTGGATGGCgggg                      >  1:8127739/1‑35 (MQ=255)
               gttgagcaggaacgtttggGACTGGATGGGggggg                     <  1:9497143‑M1/16‑1 (MQ=255)
                ttgagcaggaacgtttggGACTGGATGGggggggg                    <  1:12855924‑M1/17‑2 (MQ=255)
                ttgagcaggaacgtttggGACTGGATGGGGGGGGt                    <  1:2479648‑M1/17‑1 (MQ=255)
                cGTCATTTTTCAGGAAATGACTGGATGGCGGGGGt                    >  1:13299252/1‑35 (MQ=255)
                 gTCATTTTTCAGGAAATGACTGGATGGCGGGGGTg                   <  1:321738/35‑1 (MQ=255)
                 gTCATTTTTCAGGAAATGACTGGATGGCGGGGGTg                   <  1:896115/35‑1 (MQ=255)
                  tCATTTTTCAGGAAATGACTGGATGGCgggggggg                  >  1:52978/1‑32 (MQ=255)
                  tCATTTTTCAGGAAATGACTGGATGGCGGGGGTGa                  <  1:18729919/35‑1 (MQ=255)
                   cATTTTTCAGGAAATGACTGGATGGCGGGGGTGaa                 <  1:11081733/35‑1 (MQ=255)
                   cATTTTTCAGGAAATGACTGGATGGCGGGGGTGaa                 <  1:11786340/35‑1 (MQ=255)
                   cATTTTTCAGGAAATGACTGGATGGCGGGGGGGaa                 >  1:7781460/1‑35 (MQ=255)
                    aTTTTTCAGGAAATGACTGGATGGCGGGGGTGAAt                <  1:6173264/35‑1 (MQ=255)
                    aTTTTTCAGGAAATGACTGGATGGCGGGGGGGAAt                >  1:11236487/1‑35 (MQ=255)
                     tttttCAGGAAATGACTGGATGGCGGGGGTGAATa               <  1:16853459/35‑1 (MQ=255)
                      ttttCAGGAAATGACTGGATGGCGGGGGTGAATAc              <  1:10368786/35‑1 (MQ=255)
                        ttCAGGAAATGACTGGATGGCGGGGGTGAATACtt            <  1:10451524/35‑1 (MQ=255)
                        ttCAGGAAATGACTGGATGGCGGGGGTGAATACtt            <  1:4004944/35‑1 (MQ=255)
                        ttCAGGAAATGACTGGATGGCGGGGGTGAATACtt            <  1:42670/35‑1 (MQ=255)
                         tCAGGAAATGACTGGATGGCGGGGGTGAATACttt           <  1:3970912/35‑1 (MQ=255)
                          cAGGAAATGACTGGATGGCGGGGGTGAATACtttt          <  1:6559136/35‑1 (MQ=255)
                          cAGGAAATGACTGGATGGCGGGGGGGAATACtttt          >  1:14906241/1‑35 (MQ=255)
                           aGGAAATGACTGGATGGCGGGGGTGAATACTTTTa         <  1:4103351/35‑1 (MQ=255)
                           aGGAAATGACTGGATGGCGGGGGTGAATACTTTTa         <  1:17030828/35‑1 (MQ=255)
                           aGGAAATGACTGGATGGCGGGGGTGAATACTTTTa         <  1:7024763/35‑1 (MQ=255)
                            ggAAATGACTGGATGGCGTGGGTGAATACTTTTAt        >  1:7448679/1‑35 (MQ=255)
                             gAAATGACTGGATGGCGTGGGGGAATACTTTTATc       >  1:16452856/1‑35 (MQ=38)
                             gAAATGACTGGATGGCGGGGGGGAATACttttttt       >  1:9739600/1‑32 (MQ=37)
                               aaTGACTGGATGGCGGGGGGGGATACTTTTTTCGa     >  1:5521817/1‑35 (MQ=25)
                                aTGACTGGATGGCGGGGGTGAATACTTTTATCGAt    <  1:7579684/35‑1 (MQ=255)
                                aTGACTGGATGGCGGGGGGGAATACTTTTATCGAt    >  1:7158566/1‑35 (MQ=255)
                                 tGACTGGATGGCGGGGGTGAATACTTTTATCGATc   <  1:1967226/35‑1 (MQ=255)
                                  |                                  
TATTGGTTTTGGCTGGCGTCATTTTTCAGGAAATGACTGGATGGCGGGGGTGAATACTTTTATCGATCA  >  REL606/285031‑285099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.