New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2377427 =84 (0.820)11 (0.120) 6/42 NT 16.1% coding (92/915 nt) accD acetyl‑CoA carboxylase subunit beta
?REL606 3367495 = 41 (0.460)intergenic (‑81/+26) yhdN/rplQ hypothetical protein/50S ribosomal protein L17

Only 100 of 151 total aligned reads displayed.

GTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGC  >  REL606/3367461‑3367529
                                  |                                  
ggaacttctgccggcgtaatcacaaactggccggg                                    >  1:15709084‑M2/34‑35 (MQ=255)
ctgaatgggtgtggactaagtgtgatagctgcggg                                    >  1:15307373‑M2/35‑35 (MQ=255)
atattccaaaaacactgtttacctttaccggcggg                                    >  1:18236943‑M2/35‑35 (MQ=255)
atattccaaaaacactgtttacctttaccggcggg                                    >  1:3097882‑M2/35‑35 (MQ=255)
 tattccaaaaacactgtttacctttaccggcgggg                                   >  1:18970392‑M2/34‑35 (MQ=255)
 tattccaaaaacactgtttacctttaccggcgggg                                   >  1:19648369‑M2/34‑35 (MQ=255)
 tattccaaaaacactgtttacctttaccggcgggg                                   >  1:2600791‑M2/34‑35 (MQ=255)
 tattccaaaaacactgtttacctttaccggcgggg                                   >  1:4440412‑M2/34‑35 (MQ=255)
 tattccaaaaacactgtttacctttaccggcgggg                                   >  1:38785‑M2/34‑35 (MQ=255)
 gaacttctgccggcgtaatcacaaactggccgggg                                   >  1:10954597‑M2/33‑35 (MQ=255)
 gaacttctgccggcgtaatcacaaactggccgggg                                   >  1:6814676‑M2/33‑35 (MQ=255)
  attccaaaaacactgtttacctttaccggcggggg                                  >  1:17670330‑M2/33‑34 (MQ=255)
  aacttctgccggcgtaatcacaaactggccggggg                                  >  1:2002588‑M2/32‑34 (MQ=255)
  aacttctgccggcgtaatcacaaactggccggggg                                  >  1:18597655‑M2/32‑34 (MQ=255)
   ttccaaaaacactgtttacctttaccggcgggggg                                 >  1:15732245‑M2/32‑33 (MQ=255)
   gggATACTACGGGTATAAAAAAACCCGCCGGGGCg                                 <  1:3161170/35‑1 (MQ=255)
   gggATACTACGGGTAAAAAAAAACCCGCCgggggg                                 >  1:898313/1‑33 (MQ=37)
   acttctgccggcgtaatcacaaactggccgggggg                                 >  1:9933351‑M2/31‑33 (MQ=255)
   acttctgccggcgtaatcacaaactggccgggggg                                 >  1:4569320‑M2/31‑33 (MQ=255)
   acttctgccggcgtaatcacaaactggccgggggg                                 >  1:14009682‑M2/31‑33 (MQ=255)
   acttctgccggcgtaatcacaaactggccgggggg                                 >  1:6705003‑M2/31‑33 (MQ=255)
   acttctgccggcgtaatcacaaactggccgggggg                                 >  1:8065194‑M2/31‑33 (MQ=255)
   aaggggtgtggactaagtgtgatagctgcgggcgg                                 >  1:1341177‑M2/32‑32 (MQ=255)
   aaggggtgtggactaagtgtgatagctgcgggccg                                 >  1:1774825‑M2/32‑35 (MQ=255)
    tccaaaaacactgtttacctttaccggcggggggg                                >  1:18331714‑M2/31‑35 (MQ=255)
    tccaaaaacactgtttacctttaccggcggggggg                                >  1:16011278‑M2/31‑35 (MQ=255)
    cttctgccggcgtaatcacaaactggccgGGGGgg                                >  1:16182297‑M2/30‑35 (MQ=255)
    cttctgccggcgtaatcacaaactggccgGGGGgg                                >  1:7907057‑M2/30‑35 (MQ=255)
     ttctgccggcgtaatcacaaactggccgGGGGggg                               >  1:13294908‑M2/29‑35 (MQ=255)
     ggggtgtggactaagtgtgatagctgcgggggggg                               >  1:4769571‑M2/30‑35 (MQ=255)
     gATACTACGGGTATAAAAAAACCCCCCCGGGGggg                               >  1:211683/1‑35 (MQ=25)
      tctgccggcgtaatcacaaactggccgGGGGGGGt                              >  1:6313059‑M2/28‑35 (MQ=255)
      tctgccggcgtaatcacaaactggccgGGGGGGGt                              >  1:2988450‑M2/28‑35 (MQ=255)
      tctgccggcgtaatcacaaactggccgGGGGGGGt                              >  1:7540865‑M2/28‑35 (MQ=255)
      caaaaacactgtttacctttaccggcggggggggg                              >  1:2637853‑M2/29‑34 (MQ=255)
      aTACTACGGGTATAAAAAAACCCGCCGGGGCgggg                              >  1:9046209/1‑34 (MQ=255)
       tactacGGGTATAAAAAAACCCGCCGGGGCGGGtt                             <  1:5005597/35‑1 (MQ=255)
       tactacGGGTATAAAAAAACCCGCCGGGGCGGGtt                             <  1:19177530/35‑1 (MQ=255)
       ggtgtggactaagtgtgatagctgcggGGAGGGtt                             >  1:7158767‑M2/28‑35 (MQ=255)
       ctgccggcgtaatcacaaactggccgGGGGGGgtg                             >  1:6650613‑M2/27‑34 (MQ=255)
        gtgtggactaagtgtgatagctgcggGGGGGGttt                            >  1:6111191‑M2/27‑35 (MQ=255)
        gtgtggactaagtgtgatagctgcggGGGGGGttt                            >  1:16525521‑M2/27‑35 (MQ=255)
        gtgtggactaagtgtgatagctgcggGGAGGGttt                            >  1:16043175‑M2/27‑35 (MQ=255)
        actacGGGTATAAAAAAACCCGCCGGGGCGGGgtt                            >  1:15441159/1‑35 (MQ=255)
        aaaacactgtttacctttaccggcggGGGGGGttt                            >  1:18643198‑M2/27‑35 (MQ=255)
        aaaacactgtttacctttaccggcggGGGGGGttt                            >  1:1231938‑M2/27‑35 (MQ=255)
         tgtggactaagtgtgatagctgcggGGCGGGtttt                           >  1:1390425‑M2/26‑35 (MQ=255)
         tgtggactaagtgtgatagctgcggGGAGGGtttt                           >  1:12183143‑M2/26‑35 (MQ=255)
         aaacactgtttacctttaccggcggGGGGGGtttt                           >  1:5469835‑M2/26‑35 (MQ=255)
          tacGGGTATAAAAAAACGCGCCGGGGCGGGttttt                          <  1:11781420/35‑1 (MQ=255)
          tacGGGTATAAAAAAACCCGCCGGGGCGGGttttt                          <  1:13378554/35‑1 (MQ=255)
          gtggactaagtgtgatagctgcggGGTGGGttttt                          >  1:15294299‑M2/25‑35 (MQ=255)
           tggactaagtgtgatagctgcggGGTGGgttttta                         >  1:19179028‑M2/24‑34 (MQ=255)
           acactgtttacctttaccggcggGGGGGGtttttt                         >  1:9087393‑M2/24‑35 (MQ=255)
           acGGGTATAAAAAAACCCGCCGGGGGGGGgttttt                         >  1:6358161/1‑35 (MQ=25)
           acGGGTATAAAAAAACCCGCCGGGGCGGGtttttt                         <  1:7374621/35‑1 (MQ=255)
           acGGGTATAAAAAAACCCGCCGGGGCGGGgttttt                         >  1:17022269/1‑35 (MQ=255)
            cactgtttacctttaccggcggGGGGGgttttttc                        >  1:15435451‑M2/23‑34 (MQ=255)
            cGGGTATAAAAAAACCCGCCGGGGCGGGgtttttt                        >  1:10651758/1‑35 (MQ=255)
            cGGGTATAAAAAAACCCGCCGGGGCGGGgtttttt                        >  1:314636/1‑35 (MQ=255)
             actgtttacctttaccggcggGGGGGgtttttttc                       >  1:4099871‑M2/22‑34 (MQ=255)
              ggTATAAAAAAACCCGCCGGGGCGGGTTTTTTTAc                      >  1:18675907/1‑35 (MQ=255)
              ggTATAAAAAAACCCGCCGGGGCGGGTTTTTTTAc                      >  1:8628171/1‑35 (MQ=255)
               gTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACg                     <  1:5572708/35‑1 (MQ=255)
                tataAAAAAACCCGCCGGGGCGGGTTTTTTTACGt                    <  1:3833687/35‑1 (MQ=255)
                 ataAAAAACCCCGCCGGGGCGGGTTTTTTTACGtt                   <  1:3358393/35‑1 (MQ=255)
                 ataAAAAAACCCGCCGGGGCGGGTTTTTTTACGtt                   >  1:8937023/1‑35 (MQ=255)
                 ataAAAAAACCCGCCGGGGCGGGTTTTTTTACGtt                   <  1:8734640/35‑1 (MQ=255)
                 ataAAAAAACCCGCCGGGGCGGGTTTTATTACGtt                   <  1:4889178/35‑1 (MQ=255)
                  taAAAAACCCCGCCGGGGCGGGTTTTTTTACGTTg                  <  1:11194588/35‑1 (MQ=255)
                  taAAAAAACCCGCCGGGGCGGGGTTTTTTACGTTg                  >  1:732152/1‑35 (MQ=255)
                   aaaaaatCCCGCCGGGGCGGGTTTTTTTACGTTGc                 <  1:17122352/35‑1 (MQ=255)
                    aaaaaaCCCGCCGGGGCGGGTTTTTTTACGTTGCt                >  1:12516316/1‑35 (MQ=255)
                       aaaCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCa             <  1:17323377/35‑1 (MQ=255)
                        aaCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAg            <  1:3659019/35‑1 (MQ=255)
                         aCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGa           <  1:636426/35‑1 (MQ=255)
                         aCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGa           >  1:17371052/1‑35 (MQ=255)
                          cccGCCGGGGCGGGTTTTTTTACGTTGCTTCAGAt          >  1:232632/1‑35 (MQ=255)
                          cccGCCGGGGCGGGTTTTTTTACGTTGCTTCAGAt          >  1:10318620/1‑35 (MQ=255)
                          cccGCCGGGGCGGGTTTTTTTACGTTGCTTCAGAt          <  1:17587176/35‑1 (MQ=255)
                            cgccgGGGCGGGTTTTTTTACGTTGCTTCAGATTa        <  1:5443100/35‑1 (MQ=255)
                            cgccgGGGCGGGTTTTTTTACGTTGCTTCAGATTa        >  1:4327956/1‑35 (MQ=255)
                             gccgGGGCGGGTTTTTTTACGTTGCTTCAGATTAc       <  1:6218336‑M2/31‑1 (MQ=255)
                             gccgGGGCGGGTTTTTTTACGTTGCTTCAGATTAc       <  1:19595732‑M2/31‑1 (MQ=255)
                              ccgGGGCGGGTTTTTTTACGTTGCTTCAGATTAct      >  1:19636477‑M2/4‑35 (MQ=255)
                              ccgGGGCGGGTTTTTTTACGTTGCTTCAGATTAct      <  1:20176470‑M2/32‑1 (MQ=255)
                              ccgGGGCGGGTTTTTTTACGTTGCTTCAGATTAct      <  1:13568273‑M2/32‑1 (MQ=255)
                              ccgGGGCGGGTTTTTTTACGTTGCTTCAGATTAct      >  1:4052160‑M2/4‑35 (MQ=255)
                               cgGGGCGGGTTTTTTTACGTTGCTTCAGATTActc     <  1:10098887‑M2/33‑1 (MQ=255)
                               cgGGGCGGGGTTTTTTACGTTGCTTCAGATTActc     >  1:7259565‑M2/3‑35 (MQ=255)
                               cgGGGCGGGGTTTTTTACGTTGCTTCAGATTActc     >  1:5606228‑M2/3‑35 (MQ=255)
                                gGGGCGGGTTTTTTTACGTTGCTTCAGATTActct    >  1:10278170‑M2/2‑35 (MQ=255)
                                gGGGCGGGTTTTTTTACGTTGCTTCAGATTActct    <  1:17595087‑M2/34‑1 (MQ=255)
                                gGGGCGGGGTTTTTTACGTTGCTTCAGATTActct    >  1:2447313‑M2/2‑35 (MQ=255)
                                 gGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTg   >  1:6860370‑M2/2‑35 (MQ=255)
                                 gGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTg   <  1:11691360‑M2/34‑1 (MQ=255)
                                 gGGCGGGTTTTTTTACGTTGATTCAGATTACTCTg   <  1:769407‑M2/34‑1 (MQ=255)
                                  ggCGGGTTTTTTTACGTTGCTTCAGATTACTCTgc  >  1:19687303/1‑35 (MQ=255)
                                  ggCGGGTTTTTTTACGTTGCTTCAGATTACTCTgc  <  1:6094458/35‑1 (MQ=255)
                                  ggCGGGTTTTTTTAAGTTGCTTCAGATTACTCTgc  <  1:12296552/35‑1 (MQ=255)
                                  |                                  
GTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGC  >  REL606/3367461‑3367529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.