New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1760819 =58 (0.560)7 (0.080) 5/42 NT 9.0% coding (575/1701 nt) ydiD hypothetical protein
?REL606 = 4434365 91 (1.010)coding (58/1503 nt) ytfR predicted sugar transporter subunit: ATP‑binding component of ABC superfamily

Only 100 of 170 total aligned reads displayed.

GATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATTTCAG  >  REL606/4434331‑4434399
                                  |                                  
gaTCCTCCGCACCGAAGGATTAAGTAAATTTTTcc                                    <  1:5384450/35‑1 (MQ=255)
 aTCCTCCGCACCGAAGGATTAAGTAAATTTTTCCc                                   <  1:10054729‑M2/35‑2 (MQ=255)
 aTCCTCCGCACCGAAGGATTAAGTAAATTTTTCCc                                   <  1:18337673‑M2/35‑2 (MQ=255)
 aTCCTCCGCACCGAAGGATTAAGTAAATTTTTCCc                                   <  1:18481861‑M2/35‑2 (MQ=255)
 aTCCTCCGCACCGAAGGATTAAGTAAATTTTTCCc                                   >  1:656950‑M2/1‑34 (MQ=255)
  tcctccGCACCGAAGGATTAAGTAAATTTTTCCcc                                  >  1:3784254‑M2/1‑33 (MQ=255)
  tcctccGCACCGAAGGATTAAGTAAATTTTTCCcc                                  <  1:3102003‑M2/35‑3 (MQ=255)
  tcctccGCACCGAAGGATTAAGTAAATTTTTCCcc                                  >  1:16572893‑M2/1‑33 (MQ=255)
  tcctccGCACCGAAGGATTAAGTAAATTTTTCCcc                                  <  1:9098792‑M2/35‑3 (MQ=255)
   cctccGCACCGAAGGATTAAGTAAATTTTTCCccg                                 >  1:2217837‑M2/1‑32 (MQ=255)
   cctccGAACCGAAGGATTAAGTAAATTTTTCCccg                                 >  1:19087128‑M2/1‑32 (MQ=255)
    ctccGCACCGAAGGATTAAGTAAATTTTTCCCCgg                                <  1:11216767/35‑1 (MQ=255)
    ctccGCACCGAAGGATTAAGTAAATTTTTCCCCgg                                <  1:2289761/35‑1 (MQ=255)
    ctccGCACCGAAGGATTAAGTAAATTTTTCCCCgg                                <  1:2500723/35‑1 (MQ=255)
    ctccGCACCGAAGGATTAAGTAAATTTTTCCCCgg                                <  1:10816305/35‑1 (MQ=255)
    ctccGCACCGAAGGATTAAGTAAATTTTTCCCCgg                                >  1:2743768/1‑35 (MQ=255)
    ctccGCACCGAAGGATTAAGTAAATTTTTCCCCgg                                <  1:14345863/35‑1 (MQ=255)
     tccGCACCGAAGGATTAAGTAAATTTTTCCCCGGc                               <  1:4940564/35‑1 (MQ=255)
     tccGCACCGAAGGATTAAGTAAATTTTTCCCCGGc                               <  1:10146950/35‑1 (MQ=255)
      ccGCACCGAAGGATTAAGTAAATTTTTCCCCGGCg                              <  1:14469654/35‑1 (MQ=255)
      ccGCACCGAAGGATTAAGTAAATTTTTCCCCGGCg                              <  1:17356938/35‑1 (MQ=255)
      ccGCACCGAAGGATTAAGTAAATTTTTCCCCGGCg                              <  1:6024017/35‑1 (MQ=255)
       cGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGt                             >  1:6963662/1‑35 (MQ=255)
       cGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGt                             >  1:15261598/1‑35 (MQ=255)
       cGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGt                             >  1:16120829/1‑35 (MQ=255)
        gCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTc                            <  1:3520344/35‑1 (MQ=255)
        gCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTc                            >  1:4042812/1‑35 (MQ=255)
        gCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTc                            <  1:5037590/35‑1 (MQ=255)
        gCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTc                            >  1:6477280/1‑35 (MQ=255)
        gCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTc                            >  1:10382645/1‑35 (MQ=255)
        gCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTc                            <  1:16585894/35‑1 (MQ=255)
        gCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTc                            >  1:15753853/1‑35 (MQ=255)
        gCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTc                            <  1:8135577/35‑1 (MQ=255)
         cACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCa                           <  1:871832/35‑1 (MQ=255)
         cACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCa                           >  1:16947356/1‑35 (MQ=255)
         cACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCa                           >  1:8058041/1‑35 (MQ=255)
         cACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCa                           <  1:15494591/35‑1 (MQ=255)
         cACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCa                           >  1:11833064/1‑35 (MQ=255)
         cACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCa                           >  1:13865137/1‑35 (MQ=255)
          aCCGAAGGATTAAGTAAATTTTTCCCCGGCGTCaa                          >  1:829277/1‑35 (MQ=255)
           ccGAAGGATTAAGTAAATTTTTCCCCGGCGTCaaa                         >  1:18959913/1‑35 (MQ=255)
           ccGAAGGATTAAGTAAATTTTTCCCCGGCGTCaaa                         <  1:8130637/35‑1 (MQ=255)
           ccGAAGGATTAAGTAAATTTTTCCCCGGCGTCaaa                         >  1:10654938/1‑35 (MQ=255)
           ccGAAGGATTAAGTAAATTTTTCCCCGGCGTCaaa                         <  1:16767531/35‑1 (MQ=255)
            cGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAg                        >  1:10348694/1‑35 (MQ=255)
            cGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAg                        <  1:12971772/35‑1 (MQ=255)
            cGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAg                        >  1:18779262/1‑35 (MQ=255)
            cGAAGGATTAAGTAAATTTTTCCCAGGCGTCAAAg                        <  1:20142841/35‑1 (MQ=255)
             gAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGc                       >  1:11755112/1‑35 (MQ=255)
              aaGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCg                      >  1:361017/1‑35 (MQ=255)
               aGGATTAAGTAAATTTTTCCCGGGCGTCAAAGCGt                     >  1:14881215/1‑35 (MQ=255)
               aGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGt                     >  1:1711256/1‑35 (MQ=255)
                ggATTAAGTAAATTTTTCCCCGGCGTCAAAGCGtt                    >  1:460175/1‑35 (MQ=255)
                ggATTAAGTAAATTTTTCCCCGGCGTCAAAGCGtt                    >  1:14912750/1‑35 (MQ=255)
                ggATTAAGTAAATTTTTCCCCGGCGTCAAAGCGtt                    <  1:16018892/35‑1 (MQ=255)
                 gATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTa                   >  1:9898631/1‑35 (MQ=255)
                 gATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTa                   <  1:9312523/35‑1 (MQ=255)
                 gATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTa                   <  1:19441148/35‑1 (MQ=255)
                 gATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTa                   <  1:19361870/35‑1 (MQ=255)
                  aTTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAg                  <  1:9410779/35‑1 (MQ=255)
                  aTTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAg                  >  1:12230497/1‑35 (MQ=255)
                  aTTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAg                  >  1:14156252/1‑35 (MQ=255)
                  aTTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAg                  <  1:1367034/35‑1 (MQ=255)
                   ttAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGa                 >  1:5112142/1‑35 (MQ=255)
                   ttAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGa                 >  1:17084011/1‑35 (MQ=255)
                    tAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGAc                >  1:10286953/1‑35 (MQ=255)
                    tAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGAc                >  1:13122798/1‑35 (MQ=255)
                    tAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGAc                <  1:13341061/35‑1 (MQ=255)
                     aaGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACa               <  1:12196114/35‑1 (MQ=255)
                      aGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACaa              >  1:5674691/1‑35 (MQ=255)
                      aGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACaa              <  1:15426714/35‑1 (MQ=255)
                      aGTAAATTTTTCCACGGCGTCAAAGCGTTAGACaa              <  1:17510838/35‑1 (MQ=255)
                       gTAAATTTTTCCccgacaatatcccactgaccacg             >  1:9628592‑M2/1‑12 (MQ=255)
                       gTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAAc             >  1:19923934/1‑35 (MQ=255)
                       gTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAAc             >  1:7008931/1‑35 (MQ=255)
                       gTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAAc             >  1:5039492/1‑35 (MQ=255)
                       gTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAAc             <  1:14332311/35‑1 (MQ=255)
                       gTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAAc             <  1:18900263/35‑1 (MQ=255)
                         aagTTTTTCCccgacaatatcccactgaccacggc           >  1:2664451‑M2/1‑10 (MQ=255)
                         aaaTTTTTCCccgacaatatcccactgaccacggc           >  1:1950362‑M2/1‑10 (MQ=255)
                          aaTTTTTCCCCGGCGTCAAAGCGTTAGACAACggt          >  1:12173775/1‑33 (MQ=255)
                          aaTTTTTCCCCGGCGTCAAAGCGTTAGACAACGtt          <  1:20553269/35‑1 (MQ=255)
                           aTTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTg         <  1:646381/35‑1 (MQ=255)
                            tttttCCccgacaatatcccactgaccacggcgat        >  1:6349113‑M2/1‑7 (MQ=255)
                            tttttCCCCGGCGTCAAAGCGTTAGACAACGTTGa        >  1:1552013/1‑35 (MQ=255)
                             ttttCCccgacaatatcccactgaccacggcgata       >  1:2151917‑M2/1‑6 (MQ=255)
                             ttttCCCCGGCGTCAAAGCGTTAGACAACGTTGAt       <  1:7393678/35‑1 (MQ=255)
                             ttttCCCCGGCGTCAAAGCGTTAGACAACGTTGAt       >  1:17970455/1‑35 (MQ=255)
                             ttttCCCCGGCGTCAAAGCGTTAGACAACGTTGAt       <  1:2169801/35‑1 (MQ=255)
                              tttCCCCGGCGTCAAAGCGTTAGACAACGTTGAtt      >  1:10930433/1‑35 (MQ=255)
                               ttCCCCGGCGTCAAAGCGTTAGACAACGTTGAttt     <  1:7415102/35‑1 (MQ=255)
                               ttCCCCGGCGTCAAAGCGTTAGACAACGTTGAttt     <  1:17457242/35‑1 (MQ=255)
                               ttCCCCGGCGTCAAAGCGTTAGACAACGTTGAttt     >  1:8753689/1‑35 (MQ=255)
                                tCCccgacaatatcccactgaccacggcgataacg    >  1:6767428‑M2/1‑3 (MQ=255)
                                tCCCCGGCGTCAAAGCGTTAGACAACGTTGAtttt    >  1:15966645/1‑34 (MQ=255)
                                tCCCCGGCGTCAAAGCGTTAGACAACGGTGATTTc    >  1:12717868/1‑35 (MQ=255)
                                 ccccGGCGTCAAAGCGTTAGACAACGTTGATTTCa   <  1:19819686/35‑1 (MQ=255)
                                  cccgacaatatccccctgaccacggcgataacgac  >  1:761807‑M2/1‑1 (MQ=255)
                                  cccGGCGTCAAAGCGTTAGACAACGTTGATTTCAg  <  1:12965558/35‑1 (MQ=255)
                                  cccGGCGTCAAAGCGTTAGACAACGTTGATTTCAg  <  1:11455232/35‑1 (MQ=255)
                                  |                                  
GATCCTCCGCACCGAAGGATTAAGTAAATTTTTCCCCGGCGTCAAAGCGTTAGACAACGTTGATTTCAG  >  REL606/4434331‑4434399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.