New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3698836 = | NA (NA) | 15 (0.210) | 4/34 | NT | 13.9% | coding (1960/4134 nt) | rhsA | rhsA element core protein RshA |
? | REL606 | 3882308 = | 131 (1.270) | coding (110/816 nt) | atpB | F0F1 ATP synthase subunit A |
Only 100 of 281 total aligned reads displayed.
GAAGAACATGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGA > REL606/3882274‑3882341 | ccagccggtcaagtacatcgtaacggaaggtggtg < 1:8992625‑M2/1‑1 (MQ=255) ccagccggtcaagtacatcgtaacggaaggtggtg < 1:8733245‑M2/1‑1 (MQ=255) cagccggtcaagtacatcgtaacggaaggttgtgt > 1:18023676‑M2/34‑35 (MQ=255) cagccggtcaagtacatcgtaacggaaggtggtgt > 1:12917836‑M2/34‑35 (MQ=255) cagccggtcaagtacatcgtaacggaaggtggtgt < 1:18358928‑M2/2‑1 (MQ=255) cagccggtcaagtacatcgtaacggaaggtggtgt < 1:7173737‑M2/2‑1 (MQ=255) cagccggtcaagtacatcgtaaccgaaggtggtgt > 1:956072‑M2/34‑35 (MQ=255) aagaaCATTGAGTCAATATTGATTGTCCAGAAGGt > 1:2663318/1‑35 (MQ=255) agccggtcaagtacatcgtaacggaaggtggtgtg < 1:7809977‑M2/3‑1 (MQ=255) agccggtcaagtacatcgtaacggaaggtggtgtg < 1:6141939‑M2/3‑1 (MQ=255) agccggtcaagtacatcgtaacggaaggtggtgtg > 1:4732078‑M2/33‑35 (MQ=255) agccggtcaagtacatcgtaacggaaggtggtgtg < 1:15597890‑M2/3‑1 (MQ=255) agccggtcaagtacatcgtaacggaaggtggtgtg > 1:17373553‑M2/33‑35 (MQ=255) agccggtcaagtacatcgtaacggaagggggtgtg > 1:3982990‑M2/33‑35 (MQ=255) gccggtcaagtacatcgtaacggaaggtggtGTgg < 1:20371721‑M2/4‑1 (MQ=255) gaaCATGGAGTCAATATTGATTGTCCAGAAGGTgg > 1:16238874/1‑35 (MQ=255) gaaCATGGAGTCAATATTGATTGTCCAGAAGGTgg < 1:5628687/35‑1 (MQ=255) ccggtcaagtacatcgtaacggaaggtggtGTGGc < 1:11262100‑M2/5‑1 (MQ=255) ccggtcaagtacatcgtaacggaaggtggtGTGGc < 1:15668116‑M2/5‑1 (MQ=255) ccggtcaagtacatcgtaacggaaggtggtGTGGc < 1:10621299‑M2/5‑1 (MQ=255) ccggtcaagtacatcgtaacggaaggtggtGTGGc < 1:20414773‑M2/5‑1 (MQ=255) aaCATGGAGTCAATATTGATTGTCCAGAAGGTGGc > 1:3425811/1‑35 (MQ=255) aaCATGGAGTAAATATTGATTGTCCAGAAGGTGGc < 1:17570903/35‑1 (MQ=255) cggtcaagtacatcgtaacggaaggtggtGTGGCt < 1:255831‑M2/6‑1 (MQ=255) aCATGGAGTCAATATTGATTGTCCAGAAGGTGGCt > 1:11555794/1‑35 (MQ=255) aCATGGAGTCAATATTGATTGTCCAGAAGGTGGCt > 1:16872720/1‑35 (MQ=255) ggtcaagtacatcgtaacggaaggtggtGTGGCTg < 1:3090526‑M2/7‑1 (MQ=255) ggtcaagtacatcgtaacggaaggtggtGTGGCTg < 1:19219862‑M2/7‑1 (MQ=255) ggtcaagtacatcgtaacggaaggtggtGTGGCTg > 1:9312470‑M2/29‑35 (MQ=255) cATGGAGTCAATATTGATTGTCCAGAAGGTGGCTg > 1:1320938/1‑35 (MQ=255) cATGGAGTCAATATTGATTGTCCAGAAGGTGGCTg > 1:1908773/1‑35 (MQ=255) cATGGAGTCAATATTGATTGTCCAGAAGGTGGCTg < 1:10915671/35‑1 (MQ=255) cATGGAGTCAATATTGATTGTCCAGAAGGGGGCtt > 1:17233781/1‑34 (MQ=255) gtcaagtacatcgtaacggaaggtggtGTGGCTgg > 1:4593393‑M2/28‑35 (MQ=255) gtcaagtacatcgtaacggaaggtggtGTGGCTgg > 1:9877530‑M2/28‑35 (MQ=255) tcaagtacatcgtaacggaaggtggtGTGGCTggg > 1:2177594‑M2/27‑35 (MQ=255) tcaagtacatcgtaacggaaggtggtGTGGCTggg > 1:18230103‑M2/27‑35 (MQ=255) tcaagtacatcgtaacggaaggtggtGTGGCTggg > 1:10045598‑M2/27‑35 (MQ=255) tcaagtacatcgtaacggaaggtggtGTGGCTggg > 1:16539336‑M2/27‑35 (MQ=255) tGGAGTCAATATTGATTGTCCAGAAGGGGGCTggg > 1:17710355/1‑35 (MQ=255) ggAGTCAATATTGATTGTCCAGAAGGTGGCTgggg > 1:14582167/1‑35 (MQ=255) ggAGTCAATATTGATTGTCCAGAAGGTGGCTgggg < 1:9128284/35‑1 (MQ=255) caagtacatcgtaacggaaggtggtGTGGCTgggg > 1:20253491‑M2/26‑35 (MQ=255) nagtacatcgtaacggaaggtggtGTGGCTggggg > 1:7142801‑M2/25‑35 (MQ=255) gAGTCAATATTGATTGTCCAGAAGGTGGCTggggg > 1:7007562/1‑35 (MQ=255) aGTCAATATTGATTGTCCAGAAGGTGGGTgggggg < 1:4414568/35‑1 (MQ=255) aGTCAATATTGATTGTCCAGAAGGTGGCTgggggg < 1:6054748/35‑1 (MQ=255) gTCAATATTGATTGTCGAGAAGGGGGCTggggggg > 1:494228/1‑34 (MQ=37) gTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGt < 1:9368952/35‑1 (MQ=255) tCAATATTGATTGTCCAGAAGGTGGCTGGGGGGtt > 1:2953384/1‑35 (MQ=255) tCAATATTGATTGTCCAGAAGGTGGCTGGGGGGtt < 1:12078352/35‑1 (MQ=255) tCAATATTGATTGTCAAGAAGGTGGCTGGGGGGtt < 1:3052333/35‑1 (MQ=255) cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt < 1:4240004/35‑1 (MQ=255) cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt > 1:15799152/1‑35 (MQ=255) cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt < 1:10141837/35‑1 (MQ=255) cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt < 1:5409304/35‑1 (MQ=255) acatcgtaacggaaggtggtGTGGCTGGGGGGttt > 1:1703037‑M2/21‑35 (MQ=255) atcgtaacggaaggtggtGTGGCTGGGGGgttttt > 1:11621332‑M2/19‑34 (MQ=255) atatTGATTGTCCAGAAGGTGGCTGGGGGGttttt > 1:18572220/1‑34 (MQ=255) tatTGATTGTCCAGAAGGTGGCTGGGGGGTTTtgt > 1:10906528/1‑35 (MQ=255) tatTGATTGTCCAGAAGGTGGCTGGGGGGTTTtgt < 1:19717765/35‑1 (MQ=255) cgtaacggaaggtggtGTGGCTGGGGGGTTTtctg > 1:3559942‑M2/17‑35 (MQ=255) attgattgTCCAGAAGGTGGCTGGGGGGTTTtgtg > 1:14734834/1‑35 (MQ=255) attgattgTCCAGAAGGTGGCTGGGGGGTTTtgtg < 1:11864693/35‑1 (MQ=255) attgattgTCCAGAAGGTGGCTGGGGGGTTTtgtg < 1:8537398/35‑1 (MQ=255) ttgattgTCCAGAAGGTGGCTGGGGGGTTTTGTgg < 1:10665631/35‑1 (MQ=255) ttgattgTCCAGAAGGTGGCTGGGGGGTTTTGTgg > 1:6308633/1‑35 (MQ=255) ttgattgTCCAGAAGGTGGCTGGGGGGTTTTGTgg < 1:10862982/35‑1 (MQ=255) ttgattgTCCAGAAGGTGGCTGGGGGGTTTTGTgg < 1:20127745/35‑1 (MQ=255) gtaacggaaggtggtGTGGCTGGGGGGTTTTCTgg > 1:12876851‑M2/16‑35 (MQ=255) tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa > 1:1112173/1‑35 (MQ=255) gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt > 1:5064562/1‑35 (MQ=255) gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt > 1:14999282/1‑35 (MQ=255) gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt < 1:19692452/35‑1 (MQ=255) attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc < 1:283343/35‑1 (MQ=255) attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc < 1:5142531/35‑1 (MQ=255) attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc < 1:14883966/35‑1 (MQ=255) attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc > 1:7496128/1‑35 (MQ=255) ttgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcc > 1:3353508/1‑35 (MQ=255) ttgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcc > 1:15916412/1‑35 (MQ=255) tgTCCAGAAGGTGGCTGGGGGGTTTTTTGGATcca > 1:8362869/1‑35 (MQ=255) tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca < 1:3752761/35‑1 (MQ=255) tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca < 1:8162752/35‑1 (MQ=255) tCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc > 1:17278962/1‑35 (MQ=255) tCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc < 1:6670622/35‑1 (MQ=255) ccAGAAGGTGGCTGGGGGGTTTTGTGGATccacca > 1:18815787/1‑35 (MQ=255) ccAGAAGGTGGCTGGGGGGTTTTGTGGATccacca > 1:13871952/1‑35 (MQ=255) ccAGAAGGTGGCTGGGGGGTTTTGTGGATccacaa < 1:16171863/35‑3 (MQ=255) cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg < 1:19957150/35‑1 (MQ=255) cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg < 1:5496371/35‑1 (MQ=255) aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc < 1:15485056/35‑1 (MQ=255) aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc < 1:7722681/35‑1 (MQ=255) aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc > 1:2751387/1‑35 (MQ=255) gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg < 1:223505/35‑1 (MQ=255) gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg > 1:8268116/1‑35 (MQ=255) aaGGTGGCTGGGGGGTTTTGTGGATCCGCCAGCga < 1:4088361/35‑1 (MQ=255) aGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgag < 1:12355174/35‑1 (MQ=255) aGGTGGCTGGGGGGTTTTGTGGATCCACCAGAgag > 1:15085730/1‑35 (MQ=255) ggTGGCTGGGGGGTTTTGTGGATCCACCAGCgaga < 1:11450472/35‑1 (MQ=255) ggTGGCTGGGGGGTTTTGTGGATCCACCAGCgaga < 1:17482997/35‑1 (MQ=255) | GAAGAACATGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGA > REL606/3882274‑3882341 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |