New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 101794468 (0.660)11 (0.110) 7/48 NT 11.4% coding (1638/2601 nt) ycbS predicted outer membrane usher protein
?REL606 = 3424887 103 (1.000)intergenic (+105/‑21) nirD/nirC nitrite reductase small subunit/nitrite transporter

Only 100 of 169 total aligned reads displayed.

CATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACAC  >  REL606/3424853‑3424921
                                  |                                  
cATTTTTTAAACTTTTTGTTTTATTTTTTGttttt                                    <  1:6576919/35‑1 (MQ=255)
 aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa                                   <  1:9555831/35‑1 (MQ=255)
 aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa                                   <  1:8077502/35‑1 (MQ=255)
 aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa                                   >  1:8701756/1‑35 (MQ=255)
 aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa                                   <  1:563000/35‑1 (MQ=255)
 aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa                                   >  1:4844142/1‑35 (MQ=255)
 aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa                                   <  1:19826885/35‑1 (MQ=255)
  ttttttAAACTTTTTGTTTTATTTTTTGTTTTTAt                                  <  1:7056002/35‑1 (MQ=255)
   tttttAAACTTTTTTTTTTATTTTTTGTTTTTAtt                                 >  1:14887760/1‑35 (MQ=255)
   tttttAAACTTTTTGTTTTATTTTTTGTTTTTAtt                                 >  1:14457138/1‑35 (MQ=255)
   tttttAAACTTTTTGTTTTATTTTTTGTTTTTAtt                                 <  1:257761/35‑1 (MQ=255)
    ttttAAACTTTTTGTTTTATTTTTTGTTTTTAttt                                <  1:20294406/35‑1 (MQ=255)
    ttttAAACTTTTTGTTTTATTTTTTGTTTTTAttt                                <  1:8610547/35‑1 (MQ=255)
    ttttAAACTTTTTGTTTTATTTTTTGTTTTTAttt                                >  1:2873631/1‑35 (MQ=255)
     tttAAACTTTTTGTTTTATTTTTTGTTTTTAtttt                               >  1:225515/1‑35 (MQ=255)
     tttAAACTTTTTGTTTTATTTTTTGTTTTTAtttt                               <  1:18458225/35‑1 (MQ=255)
     tttAAACTTTTTGTTTTATTTTTTGTTTTTAtttt                               <  1:4758577/35‑1 (MQ=255)
      ttAAACTTTTTGTTTTATTTTTTGTTTTTAttttt                              >  1:9328096/1‑35 (MQ=255)
      ttAAACTTTTTGTTTTATTTTTTGTTTTTAttttt                              >  1:3797546/1‑35 (MQ=255)
        aaaCTTTTTGTTTTATTTTTTGTTTTTATTTTTTa                            <  1:17693802/35‑1 (MQ=255)
        aaaCTTTTTGTTTTATTTTTTGTTTTTATTTTTTa                            <  1:16692905/35‑1 (MQ=255)
        aaaCTTTTTGTTTTATTTTTTGTTTTTATTTTTTa                            >  1:13822495/1‑35 (MQ=255)
          aCTTTTTGTTTTATTTTTTGTTTTTATTTTTTaaa                          >  1:12427624/1‑35 (MQ=255)
          aCTTTTTGTTTTATTTTTTGTTTTTATTTTTTaaa                          >  1:14932759/1‑35 (MQ=255)
          aCTTTTTGTTTTATTTTTTGTTTTTATTTTTTaaa                          >  1:5098233/1‑35 (MQ=255)
           cTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAg                         >  1:19091734/1‑35 (MQ=255)
           cTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAg                         >  1:1356268/1‑35 (MQ=255)
            tttttGTTTTATTTTTTGTTTTTATTTTTTAAAgg                        >  1:4289971/1‑35 (MQ=255)
            tttttGTTTTATTTTTTGTTTTTATTTTTTAAAgg                        >  1:12314819/1‑35 (MQ=255)
            tttttGTTTTATTTTTTGTTTTTATTTTTTAAAgg                        >  1:8582267/1‑35 (MQ=255)
            tttttGTTTTATTTTTTGTTTTTATTTTTTAAAgg                        <  1:1379688/35‑1 (MQ=255)
            tttttGTTTTATTTTTTGTTTTTATTTTTTAAAgg                        >  1:7927135/1‑35 (MQ=255)
             ttttGTTTTATTTTTTGTTTTTATTTTTTAAAGGa                       <  1:19799718/35‑1 (MQ=255)
             ttttGTTTTATTTTTTGTTTTTATTTTTTAAAGGa                       >  1:16657802/1‑35 (MQ=255)
             ttttGTTTTATTTTTTGTTTTTATTTTTTAAAGGa                       >  1:12422236/1‑35 (MQ=255)
              tttGTTTTATTTTTTGTTTTTATTTTTTAAAGGAt                      >  1:811462/1‑35 (MQ=255)
              tttGTTTTATTTTTTGTTTTTATTTTTTAAAGGAt                      >  1:18625674/1‑35 (MQ=255)
                tGTTTTATTTTTTGTTTTTATTTTTTAAAGGATaa                    >  1:20244530/1‑35 (MQ=255)
                tGTTTTATTTTTTGTTTTTATTTTTTAAAGGATaa                    >  1:15519001/1‑35 (MQ=255)
                tGTTTTATTTTTTGTTTTTATTTTTTAAAGGATaa                    >  1:12754513/1‑35 (MQ=255)
                tGTTTTATTTTTTGTTTTTATTTTTTAAAGGATaa                    >  1:17762665/1‑35 (MQ=255)
                 gTTTTATTTTTTGTTTTTATTTTTTAAAGGATAAt                   >  1:7772314/1‑35 (MQ=255)
                 gTTTTATTTTTTGTTTTTATTTTTTAAAGGATAAt                   >  1:20549924/1‑35 (MQ=255)
                 gTTTTATTTTTTGTTTTTATTTTTTAAAGGATAAt                   >  1:3701371/1‑35 (MQ=255)
                  ttttATTTTTTTTTTTTtagccgatcctgttgatc                  >  1:3420825‑M2/1‑17 (MQ=255)
                  ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc                  <  1:14911736/35‑1 (MQ=255)
                  ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc                  >  1:35606/1‑35 (MQ=255)
                  ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc                  <  1:5226727/35‑1 (MQ=255)
                  ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc                  <  1:16278075/35‑1 (MQ=255)
                  ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc                  <  1:6299530/35‑1 (MQ=255)
                  ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc                  >  1:7191355/1‑35 (MQ=255)
                  ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc                  >  1:847058/1‑35 (MQ=255)
                  ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc                  <  1:19437533/35‑1 (MQ=255)
                   tttATTTTTTGTTTTTATTTTTTAAAGGATAATCa                 <  1:20200164/35‑1 (MQ=255)
                    ttATTTTTTTTTTTTtagccgatcctgttgatccg                >  1:12537491‑M2/1‑15 (MQ=255)
                    ttATTTTTTGTTTTTATTTTTTAAAGGATAATCaa                <  1:176260/35‑1 (MQ=255)
                    ttATTTTTTGTTTTTATTTTTTAAAGGATAATCaa                <  1:8748361/35‑1 (MQ=255)
                    ttATTTTTTGTTTTTATTTTTTAAAGGATAATCaa                <  1:7683273/35‑1 (MQ=255)
                     tATTTTTTGTTTTTATTTTTTAAAGGATAATCaaa               <  1:19201951/35‑1 (MQ=255)
                     tATTTTTTGTTTTTATTTTTTAAAGGATAATCaaa               <  1:18400420/35‑1 (MQ=255)
                      aTTTTTTGTTTTTATTTTTTAAAGGATAATCAAAt              >  1:12771977/1‑35 (MQ=255)
                      aTTTTTTGTTTTTATTTTTTAAAGGATAATCAAAt              <  1:4356060/35‑1 (MQ=255)
                      aTTTTTTGTTTTTATTTTTTAAAGGATAATCAAAt              >  1:17523590/1‑35 (MQ=255)
                      aTTTTTTGTTTTTATTTTTTAAAGGATAATCAAAt              <  1:960272/35‑1 (MQ=255)
                       ttttttTTTTTTtagccgatcctgttgatccgtat             >  1:18225007‑M2/1‑12 (MQ=255)
                       ttttttTTTTTTtagccgatcctgttgatccgtat             >  1:8332556‑M2/1‑12 (MQ=255)
                       ttttttGTTTTTATTTTTTAAAGGATAATCAAATg             <  1:5845915/35‑1 (MQ=255)
                       ttttttGTTTTTATTTTTTAAAGGATAATCAAATg             >  1:2388316/1‑35 (MQ=255)
                       ttttttGTTTTTATTTTTTAAAGGATAATCAAATg             >  1:10608734/1‑35 (MQ=255)
                       ttttttGTTTTTATTTTTTAAAGGATAATCAAATg             >  1:20588693/1‑35 (MQ=255)
                        tttttGTTTTTATTTTTTAAAGGATAATCAAATGt            >  1:12981082/1‑35 (MQ=255)
                        tttttGTTTTTATTTTTTAAAGGATAATCAAATGt            >  1:19215928/1‑35 (MQ=255)
                         ttttGTTTTTATTTTTTAAAGGATAATCAAATGtt           <  1:13455623/35‑1 (MQ=255)
                         ttttGTTTTTATTTTTTAAAGGATAATCAAATGtt           >  1:15875560/1‑35 (MQ=255)
                         ttttGTTTTTATTTTTTAAAGGATAATCAAATGtt           >  1:17154729/1‑35 (MQ=255)
                          tttGTTTTTATTTTTTAAAGGATAATCAAATGttt          <  1:14588236/35‑1 (MQ=255)
                          tttGTTTTTATTTTTTAAAGGATAATCAAATGttt          <  1:17304390/35‑1 (MQ=255)
                          tttGTTTTTATTTTTTAAAGGATAATCAAATGttt          <  1:5447655/35‑1 (MQ=255)
                          tttGTTTTTATTTTTTAAAGGATAATCAAATGttt          >  1:3286466/1‑35 (MQ=255)
                          gtttTTTTTtagccgatcctgttgatccgtatgcc          >  1:2443475‑M2/2‑9 (MQ=255)
                           ttTTTTTTtagccgatcctgttgatccgtatgcca         >  1:5364837‑M2/1‑8 (MQ=255)
                           ttGTTTTTATTTTTTAAAGGATAATCAAATGTTTa         <  1:11911955/35‑1 (MQ=255)
                           ttGTTTTTATTTTTTAAAGGATAATCAAATGTTTa         <  1:15614317/35‑1 (MQ=255)
                           ttGTTTTTATTTTTTAAAGGATAATCAAATGTTTa         <  1:7708363/35‑1 (MQ=255)
                           ttGTTTTTATTTTTTAAAGGATAATCAAATGTTTa         <  1:14304938/35‑1 (MQ=255)
                           ttGTTTTTATTTTTTAAAGGATAATCAAATGTTTa         >  1:4181641/1‑35 (MQ=255)
                            tGTTTTTATTTTTTAAAGGATAATCAAATGTTTAc        <  1:13304972/35‑1 (MQ=255)
                            tGTTTTTATTTTTTAAAGGATAATCAAATGTTTAc        >  1:15452885/1‑35 (MQ=255)
                            tGTTTTTATTTTTTAAAGGATAATCAAATGTTTAc        <  1:5680363/35‑1 (MQ=255)
                              ttttttagccgatcctgttgatccgtatgccagta      >  1:15299535‑M2/1‑5 (MQ=255)
                              ttttttagccgatcctgttgatccgtatgccagta      >  1:11388539‑M2/1‑5 (MQ=255)
                               tttttagccgatcctgttgatccgtatgccagtaa     >  1:15835781‑M2/1‑4 (MQ=255)
                               ttttATTTTTTAAAGGATAATCAAATGTTTACAGa     <  1:13637365/35‑1 (MQ=255)
                               ttttATTTTTTAAAGGATAATCAAATGTTTACAGa     >  1:9473293/1‑35 (MQ=255)
                               ttttATTTTTTAAAGGATAATCAAATGTTTACAGa     >  1:11086660/1‑35 (MQ=255)
                                ttttagccgatcctgttgatccgtatgccagtaag    >  1:2107722‑M2/1‑3 (MQ=255)
                                tttATTTTTTAAAGGATAATCAAATGTTTACAGac    >  1:11659497/1‑35 (MQ=255)
                                 ttATTTTTTAAAGGATAATCAAATGTTTACAGaca   <  1:13970178/35‑1 (MQ=255)
                                  ttagccgatcctgttgatccgtatgccagtaagtt  >  1:19656895‑M2/1‑1 (MQ=255)
                                  ttagccgatcctgttgatccgtatgccagtaagtt  >  1:9637745‑M2/1‑1 (MQ=255)
                                  |                                  
CATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACAC  >  REL606/3424853‑3424921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.