New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2533712 =95 (0.920)9 (0.130) 3/32 NT 14.4% coding (987/2007 nt) hyfR DNA‑binding transcriptional activator, formate sensing
?REL606 3554407 = 44 (0.640)coding (321/384 nt) yhhH hypothetical protein

Only 100 of 135 total aligned reads displayed.

AAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGA  >  REL606/3554373‑3554441
                                  |                                  
cagattcgaaaggagctgctcgctaagctggtggg                                    >  1:19046285‑M2/35‑35 (MQ=255)
cagattcgaaaggagctgctcgctaagctggtggg                                    >  1:15364957‑M2/35‑35 (MQ=255)
cagattcgaaaggagctgctcgctaagctgggggg                                    >  1:8870901‑M2/35‑35 (MQ=255)
aaGGTACCATTCACTCAGACCAAATTGCTGGTggg                                    >  1:16679194/1‑35 (MQ=255)
aaGGTACCATTCACTCAGACCAAATTGCTGGTggg                                    >  1:4126298/1‑35 (MQ=255)
 aGGTACCATTCACTCAGACCAAATTGCTGGTgggg                                   >  1:17717118/1‑35 (MQ=255)
 aGGTACCATTCACTCAGACCAAATTGCTGGTgggg                                   >  1:17187778/1‑35 (MQ=255)
 aGGTACCATTCACTCAGACCAAATTGCTGGTgggg                                   >  1:11818712/1‑35 (MQ=255)
  ggTACCATTCACTCAGACCAAATTGCTGGTGGGGt                                  <  1:19928712/35‑1 (MQ=255)
  ggTACCATTCACTCAGACCAAATTGCTGGTGGGGt                                  >  1:15697409/1‑35 (MQ=255)
  ggTACCATTCACTCAGACCAAATTGCTGGTGGGGt                                  <  1:526321/35‑1 (MQ=255)
  ggTACCATTCACTCAGACCAAATTGCTGGTGGGGt                                  >  1:13359989/1‑35 (MQ=255)
  ggTACCATTCACTCAGACCAAATTGCTGGTGGGGt                                  <  1:7658984/35‑1 (MQ=255)
  ggTACCATTCACTCAGACCAAATTGCTGGTGGGGt                                  <  1:12237032/35‑1 (MQ=255)
   gTACCATTCACTCAGACCAAATTGCTGGTGGGGtt                                 <  1:15301629/35‑1 (MQ=255)
   attcgaaaggagctgctcgctaagctggtggGTtt                                 >  1:8031583‑M2/32‑35 (MQ=255)
   attcgaaaggagctgctcgctaagctggtggGGtt                                 >  1:2336992‑M2/32‑35 (MQ=255)
    ttcgaaaggagctgctcgctaagctggtggGTttt                                >  1:13794622‑M2/31‑35 (MQ=255)
    ttccATTCACTCAGACCAAATTGCTGGTGGGGttt                                <  1:9050175/33‑1 (MQ=255)
    tACCATTCACTCAGACCAAATTGCTGGTGGGGttt                                <  1:17008099/35‑1 (MQ=255)
    tACCATTCACTCAGACCAAATTGCTGGTGGGGtag                                >  1:15781064/1‑33 (MQ=255)
     aCCATTCACTCAGACCAAATTGCTGGTGGGGtttt                               >  1:12041957/1‑35 (MQ=255)
     aCCATTCACTCAGACCAAATTGCTGGTGGGGtttt                               <  1:5819480/35‑1 (MQ=255)
     aCCATTCACTCAGACCAAATTGCTGGTGGGGtttt                               <  1:6649533/35‑1 (MQ=255)
      cgaaaggagctgctcgctaagctggtggGTttttt                              >  1:10521608‑M2/29‑35 (MQ=255)
      cgaaaggagctgctcgctaagctggtggGGttttt                              >  1:6520106‑M2/29‑35 (MQ=255)
      cgaaaggagctgctcgctaagctggtggGGttttt                              >  1:18092958‑M2/29‑35 (MQ=255)
      ccATTCACTCAGACCAAATTGCTGGTGGGGttttt                              >  1:1053213/1‑35 (MQ=255)
      ccATTCACTCAGACCAAATTGCTGGTGGGGatttt                              >  1:5372768/1‑35 (MQ=255)
       gaaaggagctgctcgctaagctggtggGttttttt                             >  1:9650119‑M2/28‑34 (MQ=255)
       cATTCACTCAGACCAAATTGCTGGTGGGGTTTtta                             >  1:19116842/1‑35 (MQ=255)
       cATTCACTCAGACCAAATTGCTGGTGGGGTTTtta                             >  1:17466708/1‑35 (MQ=255)
        aaaggagctgctcgctaagctggtggggttttttt                            >  1:1155497‑M2/27‑33 (MQ=255)
        aTTCACTCAGACCAAATTGCTGGTGGGGTTTttat                            <  1:4739526/35‑1 (MQ=255)
        aTTCACTCAGACCAAATTGCTGGTGGGGTTTttat                            >  1:3035388/1‑35 (MQ=255)
        aTTCACTCAGACCAAATTGCTGGTGGGGTTTttat                            >  1:19383262/1‑35 (MQ=255)
         ttCACTCAGACCAAATTGCTGGTGGGGTTTttatt                           >  1:9821930/1‑35 (MQ=255)
         aaggagctgctcgctaagctggtggggtttttgct                           >  1:9151‑M2/26‑32 (MQ=255)
         aaggagctgctcgctaagctggtggGGTTTttttt                           >  1:4106208‑M2/26‑35 (MQ=255)
          tCACTCAGACCAAATTGCTGGTGGGGTTTttatta                          <  1:8078865/35‑1 (MQ=255)
           cACTCAGACCAAATTGCTGGTGGGGTTTTtattat                         >  1:15913245/1‑35 (MQ=255)
           cACTCAGACCAAATTGCTGGTGGGGTTTTtattat                         <  1:186295/35‑1 (MQ=255)
           cACTCAGACCAAATTGCTGGTGGGGTTTTtattat                         <  1:1194874/35‑1 (MQ=255)
           cACTCAGACCAAATTGCTGGTGCGGTTTTtattat                         >  1:14090998/1‑35 (MQ=255)
            aCTCATACCAAATTGCTGGTGGGGTTTTTATtata                        >  1:887903/1‑35 (MQ=255)
            aCTCAGACCAAATTGCTGGTGGGGTTTTTATtata                        <  1:14698448/35‑1 (MQ=255)
            aCTCAGACCAAATTGCTGGTGGGGTTTTTATtata                        >  1:2997552/1‑35 (MQ=255)
            aCTCAGACCAAATTGCTGGTGGGGTTTTTATtata                        >  1:7526820/1‑35 (MQ=255)
              tCAGACCAAATTGCTGGTGGGGTTTTTATTATAGa                      >  1:4089771/1‑35 (MQ=255)
               cAGACCAAATTGCTGGTGGGGTTTTTATTATAGaa                     >  1:19645240/1‑35 (MQ=255)
                aGACCAAATTGCTGGTGGGGTTTTTATTATAGaaa                    >  1:2865630/1‑35 (MQ=255)
                 gACCAAATTGCTGGTGGGGTTTTTATTATAGAAAt                   <  1:18168529/35‑1 (MQ=255)
                 gACCAAATTGCTGGTGGGGTTTTTATTATAGAAAt                   <  1:9470412/35‑1 (MQ=255)
                   ccAAATTGCTGGTGGGGTTTTTATTATAGAAATAg                 >  1:5178880/1‑35 (MQ=255)
                    cAAATTGCTGGTGGGGTTTTTATTATAGAAATAgg                <  1:4831427/35‑1 (MQ=255)
                     aaaTTGCTGGTGGGGTTTTTATTATAGAAATAGGc               >  1:11089105/1‑35 (MQ=255)
                     aaaTTGCTGGTGGGGTTTTTATTATAGAAATAGGc               >  1:9740479/1‑35 (MQ=255)
                     aaaTTGCTGGTGGGGTTTTTATTATAGAAATAGGc               <  1:15421905/35‑1 (MQ=255)
                     aaaTTGCTGGTGGGGTTTTTATTATAGAAATAGGc               <  1:20415128/35‑1 (MQ=255)
                      aaTTGCTGGTGGGGTTTTTATTATAGAAATAGGCa              >  1:20169051/1‑35 (MQ=255)
                      aaTTGCTGGTGGGGTTTTTATTATAGAAATAGGCa              >  1:5626517/1‑35 (MQ=255)
                      aaTTGCTGGTGGGGTTTTTATTATAGAAATAGGCa              <  1:5886175/35‑1 (MQ=255)
                      aaTTGCTGGTGGGGTTTTTATTATAGAAATAGGCa              <  1:665062/35‑1 (MQ=255)
                       aTTGCTGGTGGGGTTTTTATTATAGAAATAggaca             >  1:19020468/1‑32 (MQ=255)
                       aTTGCTGGTGGGGTTTTTATTATAGAAATAGGCaa             >  1:10559977/1‑35 (MQ=255)
                       aTTGCTGGTGGGGTTTTTATTATAGAAATAGGCaa             >  1:16055519/1‑35 (MQ=255)
                       aTTGCTGGTGGGGTTTTTATTATAGAAATAGGCaa             >  1:18716035/1‑35 (MQ=255)
                        ttGCTGGTTGGGTTTTTATTATAGAAATAGGCaaa            >  1:6917709/1‑35 (MQ=255)
                        ttGCTGGTGGGGTTTTTATTATAGAAATAGGCaaa            >  1:18145243/1‑35 (MQ=255)
                        ttGCTGGTGGGGTTTTTATTATAGAAATAGGCaaa            >  1:355759/1‑35 (MQ=255)
                        ttGCTGGTGGGGTTTTTATTATAGAAATAGGCaaa            >  1:18191778/1‑35 (MQ=255)
                        ttGCTGGTGGGGTTTTTATTATAGAAATAGGCaaa            >  1:18213268/1‑35 (MQ=255)
                        ttGCTGGTGGGGTTTTTATTATAGAAATAGGCaaa            >  1:1908080/1‑35 (MQ=255)
                        ttGCTGGTGGGGTTTTTATTATAGAAATAGGCaaa            >  1:13400544/1‑35 (MQ=255)
                         tGCTGGTGGGGTTTTTATTATAGAAATAGGCaaaa           >  1:8108752/1‑35 (MQ=255)
                         tGCTGGTGGGGTTTTTATTATAGAAATAGGCaaaa           <  1:17425011/35‑1 (MQ=255)
                         tGCTGGTGGGGTTTTTATTATAGAAATAGGCaaaa           <  1:6298791/35‑1 (MQ=255)
                          gctggtggGGTTTTTATTATAGAAATAGGCaaaaa          >  1:13288128‑M2/9‑35 (MQ=255)
                          gctggtggGGTTTTTATTATAGAAATAGGCaaaaa          >  1:365031‑M2/9‑35 (MQ=255)
                          gctggtggGGTTCTTATTATAGAAATAGGCaaaaa          <  1:19160119‑M2/27‑1 (MQ=255)
                           ctggtggGGTTTTTATTATAGAAATAGGCAAAAat         <  1:18004504‑M2/28‑1 (MQ=255)
                           ctggtggGGTTTTTATTATAGAAATAGGCAAAAat         >  1:11963447‑M2/8‑35 (MQ=255)
                           ctggtggGGTTTTTATTATAGAAATAGGCAAAAat         <  1:1953386‑M2/28‑1 (MQ=255)
                            tggtggGGTTTTTATTATAGAAATAGGCAAAAatg        >  1:13597918‑M2/7‑35 (MQ=255)
                            tggtggGGTTTTTATTATAGAAATAGGCAAAAatg        >  1:3434711‑M2/7‑35 (MQ=255)
                            tggtggGGTTTTTATTATAGAAATAGGCAAAAatg        >  1:1875117‑M2/7‑35 (MQ=255)
                             ggtggGGTTTTTATTATAGAAATAGGCAAAAatga       >  1:1086840‑M2/6‑35 (MQ=255)
                             ggtggGGTTTTTATTATAGAAATAGGCAAAAatga       <  1:7692554‑M2/30‑1 (MQ=255)
                             ggtggGGTTTTTATTATAGAAATAGGCAAAAatga       <  1:19331659‑M2/30‑1 (MQ=255)
                             ggtggGGTTTTTATTATAGAAATAGGCAAAAatga       >  1:17452073‑M2/6‑35 (MQ=255)
                              gtggGGTTTTTATTATAGAAATAGGCAAAAatgat      <  1:16157264‑M2/31‑1 (MQ=255)
                              gtggGGTTTTTATTATAGAAATAGGCAAAAatgat      <  1:19839807‑M2/31‑1 (MQ=255)
                               tggGGTTTTTATTATAGAAATAGGCAAAAatgatg     <  1:4943237‑M2/32‑1 (MQ=255)
                               tggGGTTTTTATTATAGAAATAGGCAAAAatgatg     <  1:12616153‑M2/32‑1 (MQ=255)
                                ggGGTTTTTATTATAGAAATAGGCAAAAATGATgg    <  1:9250186‑M2/33‑1 (MQ=255)
                                ggGGTTTTTATTATAGAAATAGGCAAAAATGATgg    >  1:16992404‑M2/3‑35 (MQ=255)
                                 gGGTTTTTATTATAGAAATAGGCAAaaatgatgtg   >  1:864000‑M2/2‑33 (MQ=255)
                                 gGGTTTTTATTATAGAAATAGGCAAAAATGATggg   >  1:14323314‑M2/2‑35 (MQ=255)
                                  ggTTTTTATTATAGAAATAGGCAAAAATGATGGga  >  1:9649769/1‑35 (MQ=255)
                                  ggTTTTTATTATAGAAATAGGCAAAAATGATGGga  >  1:17567996/1‑35 (MQ=255)
                                  |                                  
AAGGTACCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGA  >  REL606/3554373‑3554441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.