New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 805852 =114 (1.110)112 (1.380) 8/38 NT 55.4% intergenic (+279/‑300) bioD/uvrB dethiobiotin synthetase/excinuclease ABC subunit B
?REL606 = 1193676 NA (NA)noncoding (62/768 nt) IS1 repeat region

Only 100 of 617 total aligned reads displayed.

TGGCGTTAAAGACGGCTCAAAGAAATATCTTTTATTTTTTAACTGGTTAGATAAATGCAATGGCAGTCA  >  REL606/805818‑805886
                                  |                                  
atggtgtttttgaggtgctccagtggctttttttt                                    <  1:10062221‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggctttttttt                                    <  1:18103204‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggctttttttt                                    <  1:19488875‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggctttttttt                                    <  1:15837296‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggctttttttt                                    <  1:3920372‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggctttttttt                                    <  1:15091417‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggctttttttt                                    <  1:8014877‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggctttttttt                                    <  1:14743549‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggctttttttt                                    <  1:14434131‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggcttttgttt                                    <  1:17411959‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggcttttgttt                                    <  1:18822437‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggcttttgttt                                    <  1:540611‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggcttttgttt                                    <  1:7872897‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggcttttgttt                                    <  1:2343502‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggcttttgttt                                    <  1:2499403‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggcttttgttt                                    <  1:3501670‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggcttttgttt                                    <  1:12449348‑M1/1‑1 (MQ=255)
atggtgtttttgaggtgctccagtggcttttgttt                                    <  1:4805926‑M1/1‑1 (MQ=255)
 tggtgtttttgaggtgctccagtggcttttttttt                                   <  1:6419406‑M1/2‑1 (MQ=255)
 tggtgtttttgaggtgctccagtggcttttttttt                                   <  1:10577958‑M1/2‑1 (MQ=255)
 tggtgtttttgaggtgctccagtggcttttttttt                                   <  1:8213440‑M1/2‑1 (MQ=255)
 tggtgtttttgaggtgctccagtggcttttttttc                                   <  1:3380281‑M1/2‑2 (MQ=255)
 tggtgtttttgaggtgctccagtggcttttttttc                                   <  1:3752427‑M1/2‑2 (MQ=255)
 tggtgtttttgaggtgctccagtggcttttgtttt                                   <  1:1299399‑M1/2‑1 (MQ=255)
 tggtgtttttgaggtgctccagtggcttttgtttt                                   <  1:7618751‑M1/2‑1 (MQ=255)
 ggCGTTAAAGACGGCTCAAAGAAATATCTTTTAtt                                   <  1:20007575/35‑1 (MQ=255)
  ggtgttttttaggtgctccagtggctttttttttt                                  <  1:5767615‑M1/3‑1 (MQ=255)
  ggtgtttttgaggtgctccagtggctttttttttt                                  <  1:4331617‑M1/3‑1 (MQ=255)
  ggtgtttttgaggtgctccagtggctttttttttt                                  <  1:20281699‑M1/3‑1 (MQ=255)
  ggtgtttttgaggtgctccagtggctttttttttt                                  <  1:11828236‑M1/3‑1 (MQ=255)
  ggtgtttttgaggtgctccagtggctttttttttt                                  <  1:1256210‑M1/3‑1 (MQ=255)
  ggtgtttttgaggtgctccagtggcttttttttct                                  <  1:12177379‑M1/3‑3 (MQ=255)
  ggtgtttttgaggtgctccagtggcttttgttttt                                  <  1:214410‑M1/3‑1 (MQ=255)
  ggtgtttttgaggtgctccagtggcttttgttttt                                  <  1:4207951‑M1/3‑1 (MQ=255)
  ggtgtttttgaggtgctccagtggcttttgttttt                                  <  1:2997420‑M1/3‑1 (MQ=255)
  ggtgtttttgaggtgctccagtggcttttgttttt                                  <  1:8432317‑M1/3‑1 (MQ=255)
  ggtgtttttgaggtgctccagtggcttttgttttt                                  <  1:10208899‑M1/3‑1 (MQ=255)
  ggtgtttttgaggtgctccagtggcttttgttttt                                  <  1:13302439‑M1/3‑1 (MQ=255)
  gCGTTAAAGACGGCTCAAAGAAATATCTTTTAttt                                  <  1:874916/35‑1 (MQ=255)
   gtgtttttgaggtgctccagtggcttttttttttt                                 <  1:3217032‑M1/4‑1 (MQ=255)
   gtgtttttgaggtgctccagtggcttttttttttt                                 <  1:4599977‑M1/4‑1 (MQ=255)
   gtgtttttgaggtgctccagtggcttttttttttt                                 <  1:5934497‑M1/4‑1 (MQ=255)
   gtgtttttgaggtgctccagtggcttttttttttt                                 <  1:6109279‑M1/4‑1 (MQ=255)
   gtgtttttgaggtgctccagtggcttttttttttt                                 <  1:11331957‑M1/4‑1 (MQ=255)
   gtgtttttgaggtgctccagtggcttttttttttt                                 <  1:16381683‑M1/4‑1 (MQ=255)
   gtgtttttgaggtgctccagtggctttttttttta                                 <  1:8305537‑M1/4‑2 (MQ=255)
   gtgtttttgaggtgctccagtggcttttttttcta                                 <  1:1928512‑M1/4‑4 (MQ=255)
   gtgtttttgaggtgctccagtggcttttgtttttt                                 <  1:2796139‑M1/4‑1 (MQ=255)
   gtgtttttgaggtgctccagtggcttttgttttta                                 <  1:17181080‑M1/4‑2 (MQ=255)
   gtgtttttgaggtgctccagtggcttttgttttta                                 <  1:1895541‑M1/4‑2 (MQ=255)
   gtgtttttgaggtgctccagtggcttttgttttta                                 <  1:728430‑M1/4‑2 (MQ=255)
   gtgtttttgaggtgctccagtggcttctttttttt                                 <  1:11163790‑M1/4‑1 (MQ=255)
    tgtttttgaggtgctccagtggctttttttttttt                                <  1:10795030‑M1/5‑1 (MQ=255)
    tgtttttgaggtgctccagtggctttttttttttt                                <  1:12828640‑M1/5‑1 (MQ=255)
    tgtttttgaggtgctccagtggctttttttttttt                                <  1:2892809‑M1/5‑1 (MQ=255)
    tgtttttgaggtgctccagtggctttttttttttt                                <  1:14177673‑M1/5‑1 (MQ=255)
    tgtttttgaggtgctccagtggctttttttttttt                                <  1:8126422‑M1/5‑1 (MQ=255)
    tgtttttgaggtgctccagtggctttttttttttt                                <  1:19146415‑M1/5‑1 (MQ=255)
    tgtttttgaggtgctccagtggctttttttttttt                                <  1:6905490‑M1/5‑1 (MQ=255)
    tgtttttgaggtgctccagtggcttttttttttct                                <  1:13719966‑M1/5‑3 (MQ=255)
    tgtttttgaggtgctccagtggcttcttttttttt                                <  1:16600260‑M1/5‑1 (MQ=255)
    gTTAAAGACGGCTCAAAGAAATATCTTTTAttttt                                <  1:14284432/35‑1 (MQ=255)
     gtttttgaggtgctccagtggcttttttttttttt                               <  1:15644839‑M1/6‑1 (MQ=255)
     gtttttgaggtgctccagtggcttttttttttttt                               <  1:924548‑M1/6‑1 (MQ=255)
     gtttttgaggtgctccagtggcttttttttttttt                               <  1:17034336‑M1/6‑1 (MQ=255)
     gtttttgaggtgctccagtggcttttttttttttt                               <  1:9587917‑M1/6‑1 (MQ=255)
     gtttttgaggtgctccagtggcttttttttttttc                               <  1:5195440‑M1/6‑2 (MQ=255)
     gtttttgaggtgctccagtggcttttttttttttc                               <  1:12771244‑M1/6‑2 (MQ=255)
     gtttttgaggtgctccagtggcttttttttttatc                               <  1:20575811‑M1/6‑4 (MQ=255)
     gtttttgaggtgctccagtggcttttttttttatc                               <  1:11972366‑M1/6‑4 (MQ=255)
     gtttttgaggtgctccagtggcttttgtttttttc                               <  1:20404666‑M1/6‑2 (MQ=255)
      tttttgaggtgctccagtggcttttttttttttct                              <  1:19745614‑M1/7‑3 (MQ=255)
      tttttgaggtgctccagtggctttttttTTTTTTa                              <  1:13984822‑M1/7‑1 (MQ=255)
      tttttgaggtgctccagtggctttttttTTTTTTa                              <  1:18419488‑M1/7‑1 (MQ=255)
      tttttgaggtgctccagtggctttttttTTTTTTa                              <  1:17641075‑M1/7‑1 (MQ=255)
       ttttgaggtgctccagtggcttttttttttttttc                             <  1:13573812‑M1/8‑3 (MQ=255)
        tttgaggtgctccagtggctttttttTTTTttacc                            <  1:6611989‑M1/9‑3 (MQ=255)
        tttgaggtgctccagtggctttttttTTTTTTAAc                            <  1:9078890‑M1/9‑1 (MQ=255)
        tttgaggtgctccagtggcttttgttTTTTTTAAc                            <  1:11009431‑M1/9‑1 (MQ=255)
        aaGACGGCTCAAAGAAATATCTTTTATTTTTTAAc                            <  1:11534444/35‑1 (MQ=255)
         aGACGGCTCAAAGAAATATCTTTTATTTTTTAACt                           >  1:15231922/1‑35 (MQ=255)
         aGACGGCTCAAAGAAATATCTTTTATTTTTTAACt                           >  1:14983074/1‑35 (MQ=255)
           gaggtgctccagtggctttttttTTTTTTAGCTgg                         <  1:14671483‑M1/12‑1 (MQ=255)
           gaggtgctccagtggctttttttTTTTTTAACTgg                         <  1:4037395‑M1/12‑1 (MQ=255)
           aCGGCTCAAAGAAATATCTTTTATTTTTTAACTgg                         <  1:8875068/35‑1 (MQ=255)
           aCGGCTCAAAGAAATATCTTTTATTTTTTAACTgg                         >  1:14554790/1‑35 (MQ=255)
              gCTCAAAGAAATATCTTTTATTTTTTAACTGGTTa                      <  1:5578074/35‑1 (MQ=255)
              gCTCAAAGAAATATCTTTTATTTTTTAACTGGTTa                      >  1:19883754/1‑35 (MQ=255)
                tCAAAGAAATATCTTTTATTTTTTAACTGGTTAGa                    >  1:7192193/1‑35 (MQ=255)
                  aaaGAAATATCTTTTATTTTTTAACTGGTTAGATa                  >  1:10458448/1‑35 (MQ=255)
                    aGAAATATCTTTTATTTTTTAACTGGTTAGATaaa                >  1:16778128/1‑35 (MQ=255)
                        atatCTTTTATTTTTTAACTGGTTAGATAAATGCa            <  1:4943788/35‑1 (MQ=255)
                         tatCTTTTATTTTTTAACTGGTTAGATAAATGCaa           >  1:9795533/1‑35 (MQ=255)
                         tatCTTTTATTTTTTAACTGGTTAGATAAATGCaa           >  1:15459033/1‑35 (MQ=255)
                          atCTTTTATTTTTTAACTGGTTAGATAAATGCAAt          <  1:17850644/35‑1 (MQ=255)
                            cTTTTATTTTTTAACTGGTTAGATAAATGCAATgg        >  1:7697521/1‑35 (MQ=255)
                            cTTTTATTTTTTAACTGGTTAGATAAATGCAATgg        <  1:16096181/35‑1 (MQ=255)
                            cTTTTATTTTTTAACTGGTTAGATAAATGCAATgg        >  1:7092064/1‑35 (MQ=255)
                                 aTTTTTTAACTGGTTAGATAAATGCAATGGCAGTc   <  1:9493439/35‑1 (MQ=255)
                                 aTTTTTTAACTGGTTAGATAAATGCAATGGCAGTc   <  1:17976962/35‑1 (MQ=255)
                                  |                                  
TGGCGTTAAAGACGGCTCAAAGAAATATCTTTTATTTTTTAACTGGTTAGATAAATGCAATGGCAGTCA  >  REL606/805818‑805886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.