New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 212468 =63 (0.610)18 (0.200) 5/42 NT 18.6% intergenic (+46/‑53) accA/ldcC acetyl‑CoA carboxylase subunit alpha/lysine decarboxylase 2, constitutive
?REL606 235476 = 117 (1.140)intergenic (+3/+45) yafE/mltD predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase/predicted membrane‑bound lytic murein transglycosylase D

Only 100 of 132 total aligned reads displayed.

TCTGAAAAAGGGTCACTTCGGTGGCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGG  >  REL606/212434‑212502
                                  |                                  
tCTGAAAAAGGGTCACTTCGGTGGCCCTTTTTTAt                                    <  1:9826779/35‑1 (MQ=255)
tCTGAAAAAGGGTCACTTCGGTGGCCCTTTTTTAt                                    <  1:16671571/35‑1 (MQ=255)
tCTGAAAAAGGGTCACTTCGGTGGCCCTTTTTTAt                                    >  1:9299712/1‑35 (MQ=255)
 ttGAAAAAGGGTCACTTCGGTGGCCCTTTTTTATc                                   <  1:3737590/34‑1 (MQ=255)
 cTGAAAAATGGTCACTTCGGTGGCCCTTTTTTATc                                   >  1:11222474/1‑35 (MQ=255)
 cTGAAAAAGGGTCACTTCGGTGGCCCTTTTTTATc                                   <  1:749305/35‑1 (MQ=255)
 cTGAAAAAGGGTCACTTCGGTGGCCCTTTTTTATc                                   <  1:12519956/35‑1 (MQ=255)
 cTGAAAAAGGGTCACTTCGGTGGCCCTTTTTTATc                                   >  1:4764114/1‑35 (MQ=255)
  tGAAAAAGGGTCACTTCTGTGGCCCTTTTTTATCg                                  >  1:9008700/1‑35 (MQ=255)
  tGAAAAAGGGTCACTTCGGTGGCCCTTTTTTATCg                                  <  1:18928159/35‑1 (MQ=255)
  tGAAAAAGGGTCACTTCGGTGGCCCTTTTTTATCg                                  <  1:3869478/35‑1 (MQ=255)
   gAAAAAGGGTCACTTCGGTGGCCCTTTTTTATCGc                                 <  1:20098487/35‑1 (MQ=255)
   gAAAAAGGGTCACTTCGGTGGCCCTTTTTTATCGc                                 >  1:3571417/1‑35 (MQ=255)
   gAAAAAGGGTCACTTCGGTGGCCCTTTTTTATCGc                                 >  1:15434847/1‑35 (MQ=255)
    aaaaaGGGTCACTTCGGTGGCCCTTTTTTATCGcc                                >  1:706495/1‑35 (MQ=255)
    aaaaaGGGTCACTTCGGTGGCCCTTTTTTATCGcc                                >  1:19622616/1‑35 (MQ=255)
    aaaaaGGGTCACTTCGGTGGCCCTTTTTTATCGcc                                >  1:19991247/1‑35 (MQ=255)
    aaaaaGGGTCACTTCGGTGGCCCTTTTTTATCGcc                                >  1:2600808/1‑35 (MQ=255)
    aaaaaGGGTCACTTCGGTGGCCCTTTTTTATCGcc                                >  1:13255779/1‑35 (MQ=255)
    aaaaaGGGTCACTTCGGTGGCCCTTTTTTATCGcc                                >  1:11562994/1‑35 (MQ=255)
     aaaaGGGTCACTTCGGTTGCCCTTTTTTATCGCCa                               >  1:12792601/1‑35 (MQ=255)
     aaaaGGGTCACTTCGGTGGCCCTTTTTTATCGCCa                               >  1:15358601/1‑35 (MQ=255)
      aaaGGGTCACTTCGGTGGCCCTTTTTTATCGCCAc                              >  1:6474076/1‑35 (MQ=255)
       aaGGGTCACTTCTGTGGCCCTTTTTTATCGCCACg                             >  1:14259214/1‑35 (MQ=255)
       aaGGGTCACTTCGGTGGCCCTTTTTTATCGCCACg                             >  1:5062997/1‑35 (MQ=255)
       aaGGGTCACTTCGGTGGCCCTTTTTTATCGCCACg                             >  1:18917245/1‑35 (MQ=255)
       aaGGGTCACTTCGGTGGCCCTTTTTTATCGCCACg                             >  1:17730433/1‑35 (MQ=255)
       aaGGGTCACTTCGGTGGCCCTTTTTTATCGCCACg                             >  1:5994510/1‑35 (MQ=255)
       aaGGGTCACTTCGGTGGCCCTTTTTTATCGCCACg                             >  1:8887499/1‑35 (MQ=255)
       aaGGGTCACTTCGGTGGCCCTTTTTTATCGCCACg                             >  1:13415393/1‑35 (MQ=255)
        aGGGTCACTTCGGTGGCCCTTTTTTATCGCCACgg                            >  1:15247181/1‑35 (MQ=255)
         gggTCACTTCGGTGGCCCTTTTTTATCGCCACGGt                           >  1:12674829/1‑35 (MQ=255)
         gggTCACTTCGGTGGCCCTTTTTTATCGCCACGGt                           >  1:5175817/1‑35 (MQ=255)
          ggTCACTTCGGTGGCCCTTTTTTATCGCCACGGtt                          >  1:4263513/1‑35 (MQ=255)
          ggTCACTTCGGTGGCCCTTTTTTATCGCCACGGtt                          >  1:4598196/1‑35 (MQ=255)
           gTCACTTCGGTGGCCCTTTTTTATCGCCACGGttt                         >  1:19235623/1‑35 (MQ=255)
           gTCACTTCGGTGGCCCTTTTTTATCGCCACGGttt                         >  1:6014897/1‑35 (MQ=255)
           gTCACTTCGGTGGCCCTTTTTTATCGCCACGGttt                         >  1:15570923/1‑35 (MQ=255)
            tCACTTCGGTGGCCCTTTTTTATCGCCACGGTTTg                        >  1:18270206/1‑35 (MQ=255)
             cACTTCGGTGGCCCTTTTTTATCGCCACGGTTTGa                       >  1:13163242/1‑35 (MQ=255)
             cACTTCGGTGGCCCTTTTTTATCGCCACGGTTTGa                       >  1:8914728/1‑35 (MQ=255)
                ttCGGTGGCTTTTTTTTTTCGCCACGGTTTGAGCa                    <  1:7907828/35‑1 (MQ=25)
                ttCGGTGGCCCTTTTTTATCGCCACGGTTTGAGCa                    <  1:12903932/35‑1 (MQ=255)
                tggggTGGCTTTTTTTTTTCGCCACGGTTTGAGCa                    <  1:15759413/32‑1 (MQ=19)
                tgcggtgcctttttttttTCGCCACGGTTTGAGCa                    >  1:5983103‑M1/19‑35 (MQ=255)
                  gggtggctttttttttTCGCCACGGTTTGAGCAgg                  >  1:7447684‑M1/17‑35 (MQ=255)
                  cggtgcctttttttttTCGCCACGGTTTGAGCAgg                  >  1:6581035‑M1/17‑35 (MQ=255)
                   gttgcctttttttttTCGCCACGGTTTGAGCAGGc                 >  1:11531287‑M1/16‑35 (MQ=255)
                   ggTGGCCCTTTTTTATCGCCACGGTTTGAGCAGGc                 >  1:1801005/1‑35 (MQ=255)
                   ggTGGCCCTTTTTTATCGCCACGGTTTGAGCAGGc                 >  1:16885551/1‑35 (MQ=255)
                   ggTGGCCCTTTTTTATCGCCACGGTTTGAGCAGGc                 >  1:457796/1‑35 (MQ=255)
                   ggTGGCCCTTTTTTATCGCCACGGTTTGAGCAGGc                 <  1:14400021/35‑1 (MQ=255)
                    gTGGCCTTTTTTTATCGCCACGGTTTGAGCAGGCt                <  1:10100786/35‑1 (MQ=255)
                    gTGGCCCTTTTTTATCGCCACGGTTTTAGCAGGCt                >  1:16078730/1‑35 (MQ=255)
                    gTGGCCCTTTTTTATCGCCACGGTTTGAGCAGGCt                >  1:15900616/1‑35 (MQ=255)
                    gTGGCCCTTTTTTATCGCCAAGGTTTGAGCAGGCt                <  1:18184331/35‑1 (MQ=255)
                     tGGCCCTTTTTTATCGCCACGGTTTGAGCAGGCTa               >  1:8670763/1‑35 (MQ=255)
                     ggcctttttttttTCGCCACGGTTTGAGCAGGCTa               >  1:9862902‑M1/14‑35 (MQ=255)
                      gtctttttttttTCGCCACGGTTTGAGCAGGCTAt              >  1:1441282‑M1/13‑35 (MQ=255)
                      ggctttttttttTCGCCACGGTTTGAGCAGGCTAt              >  1:19096698‑M1/13‑35 (MQ=255)
                      gccccTTTTTTATCGCCACGGTTTGAGCAGGCTAt              <  1:10319616/33‑1 (MQ=255)
                       tctttttttttTCGCCACGGTTTGAGCAGGCTATg             >  1:4182871‑M1/12‑35 (MQ=255)
                       gcttttttttaTCGCCACGGTTTGAGCAGGCTATg             >  1:2965927‑M1/12‑35 (MQ=255)
                       gCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATg             >  1:6337685/1‑35 (MQ=255)
                       gCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATg             >  1:18155662/1‑35 (MQ=255)
                        ctttttttttTCGCCACGGTTTGAGCAGGCTATGa            >  1:20437696‑M1/11‑35 (MQ=255)
                        ctttttttttTCGCCACGGTTTGAGCAGGCTATGa            >  1:6058309‑M1/11‑35 (MQ=255)
                        cctttttttATCGCCAAGGTTTGAGCAGGCTATGa            <  1:7752794/32‑1 (MQ=37)
                         tttttttttTCGCCACGGTTTGAGCAGGCTATGAt           >  1:1624761‑M1/10‑35 (MQ=255)
                         tttttttttTCGCCACGGTTTGAGCAGGCTATGAt           >  1:6242567‑M1/10‑35 (MQ=255)
                         ttttttttATCGCCACGGTTTGAGCAGGCTATGAt           <  1:14975924/33‑1 (MQ=255)
                         cttttttttTCGCCACGGTTTGAGCAGGCTATGAt           >  1:15146903‑M1/10‑35 (MQ=255)
                         cttttttttTCGCCACGGTTTGAGCAGGCTATGAt           >  1:17214101‑M1/10‑35 (MQ=255)
                         ccTTTTTTATCGCCACGGTTTGAGCAGGCTATGAt           >  1:8754550/1‑35 (MQ=255)
                         ccTTTTTTATCGCCACGGTTTGAGCAGGCTATGAt           >  1:9358355/1‑35 (MQ=255)
                          cTTTTTTATCGCCACGGTTTGAGCAGGCTATGaat          >  1:5231404/1‑33 (MQ=255)
                          cTTTTTTATCGCCACGGTTTGAGCAGGCTATGAtt          >  1:835640/1‑35 (MQ=255)
                           ttttttATCGCCACGGTTTGAGCAGGCTATGAttt         >  1:7073571/1‑34 (MQ=255)
                           ttttttATCGCCACGGTTTGAGCAGGCTATGATTa         >  1:17319341/1‑35 (MQ=255)
                           ttttttATCGCCACGGTTTGAGCAGGCTATGATTa         >  1:16750594/1‑35 (MQ=255)
                            ttttttTCGCCACGGTTTGAGCAGGCTATGATTaa        >  1:16424864‑M1/7‑35 (MQ=255)
                             ttttATCGCCACGGTTTGAGCAGGCTATGATTaag       >  1:12417327/1‑35 (MQ=255)
                             ttttATCGCCACGGTTTGAGCAGGCTATGATTaag       >  1:11437692/1‑35 (MQ=255)
                             ttttATCGCCACGGTTTGAGCAGGCTATGATTaag       >  1:17850969/1‑35 (MQ=255)
                             ttttATCGCCACGGTTTGAGCAGGCTATGATTaag       >  1:15675090/1‑35 (MQ=255)
                              tttATCGCCACGGTTTGAGCAGGCTATGATTaagg      >  1:7676023/1‑35 (MQ=255)
                               tttTCGCCACGGTTTGAGCAGGCTATGATTaagga     >  1:90852‑M1/4‑35 (MQ=255)
                               tttTCGCCACGGTTTGAGCAGGCTATGATTaagga     >  1:606791‑M1/4‑35 (MQ=255)
                               ttATCGCCACTGTTTGAGCAGGCTATGATTaagta     >  1:10108301/1‑33 (MQ=37)
                               ttATCGCCACGGTTTGAGCAGGCTATTATTaaaga     >  1:7731521/1‑35 (MQ=37)
                               ttATCGCCACGGTTTGAGCAGGCTATGATTaagga     >  1:18855171/1‑35 (MQ=255)
                                ttTCGCCACGGTTTGAGCAGGCTATGATTaaggaa    >  1:6411049‑M1/3‑35 (MQ=255)
                                tATCGCCACGGTTTGAGCAGGCTATGATTaaggaa    >  1:19581567/1‑35 (MQ=255)
                                 aTCGCCACGGTTTGAGCAGGCTATGATTtagggag   >  1:7142516/1‑35 (MQ=37)
                                 aTCGCCACGGTTTGAGCAGGCTATGATTaaggaag   >  1:4330012/1‑35 (MQ=255)
                                 aTCGCCACGGTTTGAGCAGGCTATGATTaaggaag   >  1:16698395/1‑35 (MQ=255)
                                 aTCGCCACGGTTTGAGCAGGCTATGATTaaggaag   >  1:16465951/1‑35 (MQ=255)
                                 aTCGCCACGGTTTGAGCAGGCTATGATTaaggaag   >  1:9951668/1‑35 (MQ=255)
                                 aTCGCCACGGTTTGAGCAGGCTATGAATaaggaag   >  1:13782167/1‑35 (MQ=255)
                                  tCGCCACGGTTTGAGCAGGCTATGATTaaggaagg  <  1:19225330/35‑1 (MQ=255)
                                  |                                  
TCTGAAAAAGGGTCACTTCGGTGGCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGG  >  REL606/212434‑212502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.