New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 29354872 (0.700)8 (0.090) 5/42 NT 9.4% coding (673/855 nt) ykgD predicted DNA‑binding transcriptional regulator
?REL606 2499664 = 92 (1.020)coding (171/951 nt) talA transaldolase A

CTTTTCCGTGATGTTTCCGGAACCACGCCGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/293512‑293548
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGGGTAAAAAAAATGGCAAGACCCAGGAACAACAG  >  REL606/2499664‑2499697
                                                                       
CTTTTCCGTGATGTTTCCGGAACCACGCCGCTGGC                                      <  1:11393609/35‑1
 TTTTCCGTGATGTTTCCGGAACCACGCCGCTGGCT                                     <  1:15617103/35‑1
 TTTTCCGTGATGTTTCCGGAACCACGCCGCTGGCT                                     <  1:3233013/35‑1
 TTTTCCGTGATGTTTCCGGAACCACGCCGCTGGCT                                     <  1:2675126/35‑1
  TTTCCGTGATGTTTCCGGAACCACGCCGCTGGCTG                                    <  1:9222910/35‑1
  TTTCCGTGATGTTTCCGGAACCACGCCGCTGGCTG                                    <  1:18928225/35‑1
  TTTCCGTGATGTTTCCGGAACCACGCCGCTGGCTG                                    >  1:20583692/1‑35
   TTCCGTGATGTTTCCGGAACCACGCCGCTGGCTGG                                   >  1:188588/1‑35
    TCCGTGATGTTTCCGGAACCACGCCGCTGGCTGGG                                  >  1:9781566/1‑35
    TCCGTGATGTTTCCGGAACCACGCCGCTGGCTGGG                                  >  1:12369593/1‑35
    TCCGTGATGTTTCCGGAACCACGCCGCTGGCTGGG                                  >  1:3438991/1‑35
     CCGTGATGTTTCCGGAACCACGCCGCTGGCTGGGG                                 >  1:7252076/1‑35
     CCGTGATGTTTCCGGAACCACGCCGCTGGCTGGGG                                 >  1:5172696/1‑35
     CCGTGATGTTTCCGGAACCACGCCGCTGGCTGGGG                                 >  1:3489510/1‑35
      CGTGATGTTTCCGGAACCACGCCGCTGGCTGGGGg                                >  1:4707327/1‑34
       GTGATGTTTCCGGAACCACGCCGCTGGCTGGGGga                               >  1:3515771/1‑33
       GTGATGTTTCCGGAACCACGCCGCTGGCTGGGGTt                               >  1:1034722/1‑34
       GTGATGTTTCCGGAACCACGCCGCTGGCTGGGGTg                               >  1:14875917/1‑34
        TGATGTTTCCGGAACCACGCCGCTGGCTGGGGgtt                              >  1:18537440/1‑32
        TGATGTTTCCGGAACCACGCCGCTGGCTGGGGgta                              >  1:5334112/1‑32
        TGATGTTTCCGGAACCACGCCGCTGGCTGGGGTAA                              >  1:18949629/1‑35
           TGTTTCCGGAACCACGCCGCTGGCTGGGGTTAAAA                           >  1:9944165/1‑35
            GTTTCCGGAACCACGCCGCTGGCTGGGGTTAAAAA                          >  1:19848010/1‑35
            GTTTCCGGAACCACGCCGCTGGCTGGGGTAACAAA                          >  1:20106708/1‑35
            GTTTCCGGAACCACGCCGCTGGCTGGGGTAAAAAA                          >  1:7345752/1‑35
             TTTCCGGAACCACGCCGCTGGCTGGGGTTAAAAAA                         >  1:13866670/1‑35
             TTTCCGGAACCACGCCGCTGGCTGGGGTTAAAAAA                         >  1:5147344/1‑35
                CCGGAACCACGCCGCTGGCTGGGGTTAAAAAAATG                      >  1:6788244/1‑35
                                  CTGGGGTAAAAAAAATGGCAAGCCCCAGGAACAAC    <  1:15492635/35‑1
                                  CTGGGGTAAAAAAAATGGCAAGACCCAGGAACAAC    >  1:12909872/1‑35
                                   cGGGGTAAAAAAAATGGCAAGACCCAGGAACAACA   <  1:11342634/34‑1
                                   TGGGGTAAAAAAAATGGCAAGGCCCAGGAACAACA   <  1:3333261/35‑1
                                   TGGGGTAAAAAAAATGGCAAGACCCAGGAACAACA   <  1:19016989/35‑1
                                   TGGGGTAAAAAAAATGGCAAGACCCAGGAACAACA   >  1:17467494/1‑35
                                    GGGGTAAAAAAAATGGCAAGACCCAGGAACAACAG  >  1:5784354/1‑35
                                    GGGGTAAAAAAAATGGCAAGACCCAGGAACAACAG  >  1:12676865/1‑35
                                    GGGGTAAAAAAAATGGCAAGACCCAGGAACAACAG  >  1:365293/1‑35
                                    GGGGTAAAAAAAATGGCAAGACCCAGGAACAACAG  >  1:9083873/1‑35
                                    GGGGTAAAAAAAATGGCAAGACCCAGGAACAACAG  <  1:312491/35‑1
                                                                       
CTTTTCCGTGATGTTTCCGGAACCACGCCGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/293512‑293548
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGGGTAAAAAAAATGGCAAGACCCAGGAACAACAG  >  REL606/2499664‑2499697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.