New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1493949 =71 (0.690)13 (0.160) 5/38 NT 17.3% coding (533/1062 nt) yncE hypothetical protein
?REL606 = 1619524 68 (0.840)intergenic (‑133/+84) rem/hokD predicted protein/small toxic polypeptide

Only 100 of 150 total aligned reads displayed.

AGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAGG  >  REL606/1619490‑1619558
                                  |                                  
aGAACTTCAAACGCGTTGAAAATaaaaacaaaaac                                    >  1:10029457/1‑35 (MQ=255)
aGAACTTCAAACGCGTTGAAAATaaaaacaaaaac                                    >  1:5621587/1‑35 (MQ=255)
aGAACTTCAAACGCGTTGAAAATaaaaacaaaaac                                    <  1:3872951/35‑1 (MQ=255)
aGAACTTCAAACGCGTTGAAAATaaaaacaaaaac                                    <  1:3755621/35‑1 (MQ=255)
 gAACTTCAAACGCGTTGAAAATAAAAACAAAAACc                                   >  1:10109535‑M2/1‑34 (MQ=255)
 gAACTTCAAACGCGTTGAAAATAAAAACAAAAACc                                   <  1:295981‑M2/35‑2 (MQ=255)
  aaCTTCAAACGCGTTGAAAATAAAAACAAAAACcc                                  <  1:10452702‑M2/35‑3 (MQ=255)
  aaCTTCAAACGCGTTGAAAATAAAAACAAAAACcc                                  >  1:4587415‑M2/1‑33 (MQ=255)
  aaCTTCAAACGCGTTGAAAATAAAAACAAAAACcc                                  >  1:14254217‑M2/1‑33 (MQ=255)
   aCTTCAAACGCGTTGAAAATAAAAACAAAAACccg                                 >  1:493672‑M2/1‑32 (MQ=255)
    cTTCAAACGCGTTGAAAATAAAAACAAANNCccgn                                <  1:16437002‑M2/35‑5 (MQ=255)
    cTTCAAACGCGTTGAAAATAAAAACAAAAACccgc                                >  1:9743582‑M2/1‑31 (MQ=255)
    cTTCAAACGCGTTGAAAATAAAAACAAAAACccgc                                >  1:12524557‑M2/1‑31 (MQ=255)
     ttCAAACGCGTTGAAAATAAAAACAAAAACgcgcc                               <  1:9383852‑M2/35‑6 (MQ=255)
     ttCAAACGCGTTGAAAATAAAAACAAAAACccgcc                               >  1:10061760‑M2/1‑30 (MQ=255)
     ttCAAACGCGTTGAAAATAAAAACAAAAACccgcc                               <  1:6192710‑M2/35‑6 (MQ=255)
       cAAACGCGTTGAAAATAAAAACAAAAACCCGCCGa                             >  1:14067813/1‑35 (MQ=255)
        aaaCGCGTTGAAAATAAAAACAAAAACCCGCCGaa                            >  1:9086799/1‑35 (MQ=255)
         aaCGCGTTGAAAATAAAAACAAAAACCCGCCGAAg                           >  1:18336427/1‑35 (MQ=255)
          aCGCGTTGAAAATAAAAACAAAAACCCGCCGAAGc                          >  1:20560289/1‑35 (MQ=255)
           cgcgTTGAAAATAAAAACAAAAACCCGCCGAAGCg                         >  1:2671653/1‑35 (MQ=255)
           cgcgTTGAAAATAAAAACAAAAACCCGCCGAAGCg                         >  1:6229985/1‑35 (MQ=255)
           cgcgTTGAAAATAAAAACAAAAACCCGCCGAAGCg                         >  1:4361732/1‑35 (MQ=255)
            gcgTTGAAAATAAAAACAAAAACCCGCCGAAGCgg                        >  1:11448381/1‑35 (MQ=255)
             cgTTGAAAATAAAAACAAAACCCCGCCGAAGCggg                       <  1:9040067/35‑1 (MQ=255)
             cgTTGAAAATAAAAACAAAACCCCGCCGAAGCggg                       <  1:10830812/35‑1 (MQ=255)
             cgTTGAAAATAAAAACAAAACCCCGCCGAAGCggg                       <  1:5242530/35‑1 (MQ=255)
             cgTTGAAAATAAAAACAAAAACCCGCCGAAGCggg                       >  1:8976565/1‑35 (MQ=255)
              gTTGAAAATAAAAACAAAAACCCGCCGAATCGGGt                      >  1:11959001/1‑35 (MQ=255)
              gTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGt                      >  1:20090291/1‑35 (MQ=255)
              gTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGt                      >  1:9468118/1‑35 (MQ=255)
               ttGAAAATAAAAACAAAAACCCGCCGAAGCGGGtt                     >  1:5205906/1‑35 (MQ=255)
               ttGAAAAAAAAAACAAAACCCCGCCGAAGCGGGtt                     <  1:3201702/35‑1 (MQ=18)
                tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTa                    >  1:5385695/1‑35 (MQ=255)
                tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTa                    >  1:852920/1‑35 (MQ=255)
                tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTa                    >  1:20328986/1‑35 (MQ=255)
                tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTa                    >  1:12843184/1‑35 (MQ=255)
                 gAAAATAAAAACAAAAACCCGCCGAAGCGGGTTaa                   >  1:15100864/1‑35 (MQ=255)
                 aaaaaTAAAAACAAAACCCCGCCGAAGCGGGTTaa                   <  1:9610551/34‑1 (MQ=255)
                  aaaaTAAAAACAAAAACCCGCCGAAGCGGGTTAag                  >  1:5089788/1‑35 (MQ=255)
                  aaaaAAAAACCAAAACCCCGCCGAAGCGGGTTAag                  <  1:1725202/35‑1 (MQ=17)
                  aaaaAAAAAAAAAAACCCCGCCGAAGCGGGTTAag                  <  1:5597045/35‑1 (MQ=14)
                   aaaTAAAAACAAAACCCCGCCGAAGCGGGTTAagt                 <  1:3392385/35‑1 (MQ=255)
                   aaaTAAAAACAAAACCCCGCCGAAGCGGGTTAagt                 <  1:18311406/35‑1 (MQ=255)
                   aaaTAAAAACAAAAACCCGCCGAAGCGGGTTAagt                 >  1:12417268/1‑35 (MQ=255)
                   aaaAAAAAACAAAACCCCGCCGAAGCGGGTTAagt                 <  1:8931596/35‑1 (MQ=18)
                    aaTAAAAACAAAAACCCGCCGAAGCGGGTTAcgtg                >  1:6729913/1‑35 (MQ=255)
                    aaTAAAAACAAAAACCCGCCGAAGCGGGTTAagtg                >  1:2757464/1‑35 (MQ=255)
                    aaTAAAAACAAAAACCCGCCGAAGCGGGTTAagtg                >  1:12331682/1‑35 (MQ=255)
                     aaaaaaacaaaaacccgccatccagaacaccggta               >  1:929666‑M2/3‑14 (MQ=255)
                     aTAAAAACAAAAACCCGCCGAAGCGGGTTAagtgc               >  1:19246305/1‑35 (MQ=255)
                      aaaaaacaaaaacccgccatccagaacaccggtaa              >  1:13756006‑M2/2‑13 (MQ=255)
                       aaaaacaaaaccCCGCCGAAGCGGGTTAagtgcga             <  1:10705091/35‑1 (MQ=255)
                       aaaaacaaaaacCCGCCGAAGCGGGTTAagtgcga             <  1:4942284/35‑1 (MQ=255)
                       aaaaacaaaaacCCGCCGAAGCGGGTTAagtgcga             >  1:784214/1‑35 (MQ=255)
                        aaaacagaaacccgccatccagaacaccggtaaaa            >  1:7512858‑M2/1‑11 (MQ=255)
                        aaaacaaaaacccgccatccagaacaccggtaaaa            >  1:3632109‑M2/1‑11 (MQ=255)
                        aaaacaaaaacCCGCCGAAGCGGGTTAagtgcgag            >  1:9235435/1‑35 (MQ=255)
                         aaacaaaaacCCGCAGAAGCGGGTTAagtgcgagt           <  1:6744141/35‑1 (MQ=255)
                          aacaaaaacccgccatccagaacaccggtaaaatg          >  1:17076364‑M2/1‑9 (MQ=255)
                          aacaaaaacccgccatccagaacaccggtaaaatg          >  1:1617294‑M2/1‑9 (MQ=255)
                          aacaaaaacCCGCCGAAGCGGGTTAagtgcgagtg          >  1:11162702/1‑35 (MQ=255)
                          aacaaaaacCCGCCGAAGCGGGTTAagtgcgagtg          >  1:914157/1‑35 (MQ=255)
                           caaaaaacccgccatccagaacaccggtaaaatga         >  1:8290189‑M2/3‑8 (MQ=255)
                           actaaaacccgccatccagaacaccggtaaaatga         >  1:14411600‑M2/1‑8 (MQ=255)
                           acaaaagcCCGCCGAAGCGGGTTAagtgcgagtgc         >  1:1769094/1‑35 (MQ=255)
                           acaaaaccCCGCCGAAGCGGGTTAagtgcgagtgc         <  1:3709668/35‑1 (MQ=255)
                           acaaaaccCCGCCGAAGCGGGTTAagtgcgagtgc         <  1:11716050/35‑1 (MQ=255)
                            ctaaaacccgccatccagaacaccggtaaaatgag        >  1:10955909‑M2/3‑7 (MQ=255)
                            caaaaccCCGCCGAAGCGGGTTAagtgcgagtgcg        <  1:7591328/35‑1 (MQ=255)
                            caaaaccCCGCCGAAGCGGGTTAagtgcgagtgcg        <  1:20014121/35‑1 (MQ=255)
                            caaaaccCCGCCGAAGCGGGTTAagtgcgagtgcg        <  1:251406/35‑1 (MQ=255)
                            caaaaacCCGCCCAAGCGGGTTAagtgcgagtgcg        >  1:14494372/1‑35 (MQ=255)
                             aaaaccCCGCCGAAGCGGGTTAagtgcgagtgcgg       <  1:15707614/35‑2 (MQ=255)
                             aaaaccCCGCCGAAGCGGGTTAAGTGCGAGTGCGt       <  1:13633494/35‑1 (MQ=255)
                             aaaaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGt       >  1:17866067/1‑35 (MQ=255)
                              aaaacccgccatccagcacaccggtaaaatgagta      >  1:9579456‑M2/1‑5 (MQ=255)
                               aaccccgccatccagaacaccggtaaaatgagtac     >  1:17586912‑M2/1‑4 (MQ=255)
                               aaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTg     >  1:7656428/1‑35 (MQ=255)
                               aaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTg     >  1:15415174/1‑35 (MQ=255)
                               aaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTg     >  1:11873135/1‑35 (MQ=255)
                               aaacCCGCCGAAGCGGGTTAAGTGCGAGTCCGTTg     >  1:19375034/1‑35 (MQ=255)
                               aaacCCGCAGAAGCGGGTTAAGTGCGAGTGCGTTg     <  1:15571034/35‑1 (MQ=255)
                                accccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGa    <  1:12704399/33‑1 (MQ=255)
                                accccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGa    <  1:16434098/33‑1 (MQ=255)
                                aacccgccatccagaacaccggtaaaatgagtacc    >  1:17900060‑M2/1‑3 (MQ=255)
                                aacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGa    >  1:15646342/1‑35 (MQ=255)
                                aacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGa    >  1:12852590/1‑35 (MQ=255)
                                aacCCGCCGAAGAGGGTTAAGTGCGAGTGCGTTGa    <  1:7701631/35‑1 (MQ=255)
                                 ccccgccatccagaacaccggtaaaatgagtaccg   >  1:12091203‑M2/2‑2 (MQ=255)
                                 ccccgccatccagaacaacggtaaaatgagtaccg   >  1:935245‑M2/2‑2 (MQ=255)
                                 ccccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAg   <  1:13799468/34‑1 (MQ=255)
                                 ccccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAg   <  1:16108051/34‑1 (MQ=255)
                                  cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg  <  1:13490901/35‑1 (MQ=255)
                                  cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg  >  1:3406113/1‑35 (MQ=255)
                                  cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg  >  1:11154502/1‑35 (MQ=255)
                                  cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg  >  1:3911301/1‑35 (MQ=255)
                                  cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg  <  1:11531876/35‑1 (MQ=255)
                                  cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg  >  1:10656930/1‑35 (MQ=255)
                                  cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg  <  1:15043088/35‑1 (MQ=255)
                                  |                                  
AGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAGG  >  REL606/1619490‑1619558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.