New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1493949 = | 71 (0.690) | 13 (0.160) | 5/38 | NT | 17.3% | coding (533/1062 nt) | yncE | hypothetical protein |
? | REL606 | = 1619524 | 68 (0.840) | intergenic (‑133/+84) | rem/hokD | predicted protein/small toxic polypeptide |
CCAGACCGGTACTCATTTTACCGGTGTTCTGGATGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1493987‑1493949 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTTC < REL606/1619524‑1619491 CCAGACCGGTACTCATTTTACCGGTGTTCTGGATG > 1:18203157/1‑35 CCAGACCGGTACTCATTTTACCGGTGTTCTGGATG > 1:18805499/1‑35 CCAGACCGGTACTCATTTTACCGGTGTTCTGGATG > 1:3740289/1‑35 CCAGACCGGTACTCATTTTACCGGTGTTCTGGATG < 1:4560170/35‑1 CCAGACCGGTACTCATTTTACCGGTGTTCTGGATG > 1:9293947/1‑35 CAGGCCGGTACTCATTTTACCGGTGTTCTGGATGG < 1:4005279/35‑1 CAGACCGGTACTCATTTTACCGGTGTTCTGGATGG > 1:17674301/1‑35 CAGACCGGTACTCATTTTACCGGTGTTCTGGATGG > 1:15021576/1‑35 CAGACCGGTACTCATTTTACCGGTGTTCTGGATGG > 1:13010276/1‑35 CAGACCGGTACTCATTTTACCGGTGTTCTGGATGG > 1:11236303/1‑35 CAGACCGGTACTCATTTTACCGGTGTTCTGGATGG < 1:10503620/35‑1 AGACCGGTACTCATTTTACCGGTGTTCTGGATGGC > 1:9626797/1‑35 AGACCGGTACTCATTTTACCGGTGTTCTGGATGGC < 1:7252037/35‑1 AGACCGGTACTCATTTTACCGGTGTTCTGGATGGC < 1:714071/35‑1 AGACCGGTACTCATTTTACCGGTGTTCTGGATGGC > 1:1429901/1‑35 GACCGGTACTCATTTTACCGGTGTTCTGGATGGCG < 1:10964658/35‑1 GACCGGTACTCATTTTACCGGTGTTCTGGATGGCG > 1:18778460/1‑35 GACCGGTACTCATTTTACCGGTGTTCTGGATGGCG > 1:15936910/1‑35 ACCGGTACTCATTTTACCGGTGTTCTGGATGGCGG < 1:10034769/35‑1 ACCGGTACTCATTTTACCGGTGTTCTGGATGGCGG < 1:17270124/35‑1 ACCGGTACTCATTTTACCGGTGTTCTGGATGGCGG < 1:2693915/35‑1 ACCGGTACTCATTTTACCGGTGTTCTGGATGGCGG < 1:11751545/35‑1 CCGGTACTCATTTTACCGGTGTTCTGGATGGCGGG > 1:12106453/1‑35 CGGTACTCATTTTACCGTTGTTCTGGATGGCGGGg > 1:935245/1‑34 CGGTACTCATTTTACCGGTGTTCTGGATGGCGGGg > 1:12091203/1‑34 GGTACTCATTTTACCGGTGTTCTGGATGGCGGGTT > 1:17900060/1‑35 GTACTCATTTTACCGGTGTTCTGGATGGCGGGGTT > 1:17586912/1‑35 TACTCATTTTACCGGTGTGCTGGATGGCGGGTTTT > 1:9579456/1‑35 ACTCATTTTACCGGTGTTCTGGATGGCGGGTTTTT > 1:270466/1‑35 CTCATTTTACCGGTGTTCTGGATGGCGGGTTTTag > 1:10955909/1‑33 CTCATTTGACCGGTGTTCTGGATGGCGGGTTTTTG > 1:18308091/1‑35 TCATTTTACCGGTGTTCTGGATGGCGGGTTTTTtg > 1:8290189/1‑33 TCATTTTACCGGTGTTCTGGATGGCGGGTTTTAGT > 1:14411600/1‑35 CATTTTACCGGTGTTCTGGATGGCGGGTTTTTGTT > 1:17076364/1‑35 CATTTTACCGGTGTTCTGGATGGCGGGTTTTTGTT > 1:1617294/1‑35 TTTTACCGGTGTTCTGGATGGCGGGTTTTTGTTTT > 1:13754252/1‑35 TTTTACCGGTGTTCTGGATGGCGGGTTTTTGTTTT > 1:3632109/1‑35 TTTTACCGGTGTTCTGGATGGCGGGTTTTCGTTTg > 1:6922144/1‑34 TTTTACCGGTGTTCTGGATGGCGGGTTTCTGTTTT > 1:7512858/1‑35 TTACCGGTGTTCTGGATGGCGGGTTTTTGTTTgtt > 1:7700613/1‑32 TTACCGGTGTTCTGGATGGCGGGTTTTTGTTTTTt > 1:13756006/1‑34 TACCGGTGTTCTGGATGGCGGGTTTTTGTTTTTtt > 1:929666/1‑33 GGCGGGTTTTTGTTTTTATTTTCAACGCGTTTGAA < 1:6192710/35‑1 GGCGGGTTTTTGTTTTTATTTTCAACGCGTTTGAA > 1:11931900/1‑35 GGCGGGTTTTTGTTTTTATTTTCAACGCGTTTGAA > 1:10061760/1‑35 GGCGGGGTTTTGTTTTTATTTTCAACGCGTTTGAA > 1:17856380/1‑35 GGCGCGTTTTTGTTTTTATTTTCAACGCGTTTGAA < 1:9383852/35‑1 nCGGGNNTTTGTTTTTATTTTCAACGCGTTTGAAG < 1:16437002/34‑1 GCGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAG > 1:12524557/1‑35 GCGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAG > 1:9743582/1‑35 GCGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAG < 1:6517045/35‑1 GCGGGGTTTTGTTTTTATTTTCAACGCGTTTGAAG > 1:17563354/1‑35 CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT > 1:16744628/1‑35 CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT > 1:9412540/1‑35 CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT < 1:3653118/35‑1 CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT < 1:4080292/35‑1 CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT > 1:1281762/1‑35 CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT > 1:493672/1‑35 CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT > 1:5885642/1‑35 GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT > 1:4587415/1‑35 GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT > 1:14254217/1‑35 GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT > 1:9060267/1‑35 GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT > 1:3393636/1‑35 GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT < 1:10452702/35‑1 GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT > 1:15243980/1‑35 GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT > 1:5216480/1‑35 GGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTTC < 1:295981/35‑1 GGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTTC > 1:10109535/1‑35 CCAGACCGGTACTCATTTTACCGGTGTTCTGGATGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1493987‑1493949 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTTC < REL606/1619524‑1619491 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |