New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1495878 =73 (0.710)13 (0.280) 3/22 NT 21.2% coding (215/1500 nt) ansP L‑asparagine transporter
?REL606 = 1714633 138 (1.340)intergenic (‑76/+90) ydhP/ECB_01628 putative transport protein (MFS family); b1657_2/predicted transporter

Only 100 of 219 total aligned reads displayed.

AAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCAT  >  REL606/1714599‑1714667
                                  |                                  
 aaGTGGCGAAAGCATGACAGCAATCACAAAAAAAt                                   <  1:18420323/35‑1 (MQ=255)
 aaGTGGCGAAAGCATGACAGCAATCACAAAAAAAt                                   >  1:13506228/1‑35 (MQ=255)
 aaGTGGCGAAAGCATGACAGCAATCACAAAAAAAt                                   <  1:12112051/35‑1 (MQ=255)
   gTGGCGAAAGCATGACAGCAATCACAAAAAAATGa                                 <  1:6336815/35‑1 (MQ=255)
   gTGGCGAAAGAATGACAGCAATCACAAAAAAATGa                                 <  1:1154468/35‑1 (MQ=255)
    tGGCGAAAGCATGACAGCAATCACAAAAAAATGaa                                >  1:9559337/1‑35 (MQ=255)
    tGGCGAAAGCATGACAGCAATCACAAAAAAATGaa                                >  1:19791964/1‑35 (MQ=255)
    tGGCGAAAGCATGACAGCAATCACAAAAAAATGaa                                >  1:16556956/1‑35 (MQ=255)
     ggCGAAAGCATGACAGCAATCACAAAAAAATGaaa                               <  1:8046928/35‑1 (MQ=255)
     ggCGAAAGCATGACAGCAATCACAAAAAAATGaaa                               <  1:15721240/35‑1 (MQ=255)
     ggCGAAAGCATGACAGCAATCACAAAAAAATGaaa                               <  1:18202746/35‑1 (MQ=255)
     ggCGAAAGAATGACAGCAATCACAAAAAAATGaaa                               <  1:17679729/35‑1 (MQ=255)
      gCGAAAGCATGACAGCAATCACAAAAAAATGaaaa                              <  1:17576838/35‑1 (MQ=255)
      gCGAAAGCATGACAGCAATCACAAAAAAATGaaaa                              <  1:19003585/35‑1 (MQ=255)
       cGAAAGCATGACAGCAATCACAAAAAAATGAAAAt                             >  1:16045035/1‑35 (MQ=255)
       cGAAAGCATGACAGCAATCACAAAAAAATGAAAAt                             <  1:5923813/35‑1 (MQ=255)
       cGAAAGCATGACAGCAATCACAAAAAAATGAAAAt                             >  1:9078208/1‑35 (MQ=255)
        gAAAGCATGACAGCAATCACAAAAAAATGAAAATa                            >  1:13294444/1‑35 (MQ=255)
        gAAAGCATGACAGCAATCACAAAAAAATGAAAATa                            >  1:19306143/1‑35 (MQ=255)
         aaaGCATGACAGCAATCACAAAAAAATGAAAATaa                           <  1:19612623/35‑1 (MQ=255)
         aaaGCATGACAGCAATCACAAAAAAATGAAAATaa                           >  1:1320932/1‑35 (MQ=255)
         aaaGCATGACAGCAATCACAAAAAAATGAAAATaa                           <  1:3284121/35‑1 (MQ=255)
          aaGCATGACAGCAATCACAAAAAAATGAAAATAAc                          <  1:12642890/35‑1 (MQ=255)
           aGCATGACAGCAATCACAAAAAAATGAAAATAACa                         <  1:7648751/35‑1 (MQ=255)
           aGCATGACAGCAATCACAAAAAAATGAAAATAACa                         <  1:3711917/35‑1 (MQ=255)
           aGCATGACAGCAATCACAAAAAAATGAAAATAACa                         <  1:215243/35‑1 (MQ=255)
           aGCATGACAGCAATCACAAAAAAATGAAAATAACa                         <  1:11384988/35‑1 (MQ=255)
           aGCATGACAGCAATCACAAAAAAATGAAAATAACa                         >  1:13074224/1‑35 (MQ=255)
            gCATGACAGCAATCACAAAAAAATGAAAATAACaa                        <  1:20553056/35‑1 (MQ=255)
            gCATGACAGCAATCACAAAAAAATGAAAATAACaa                        >  1:16497940/1‑35 (MQ=255)
             cATGACAGCAATCACAAAAAAATGAAAATAACaaa                       <  1:10492719/35‑1 (MQ=255)
             cATGACAGCAATCACAAAAAAATGAAAATAACaaa                       >  1:6570448/1‑35 (MQ=255)
              aTGACAGCAATCACAAAAAAATGAAAATAACaaaa                      <  1:15039429/35‑1 (MQ=255)
              aTGACAGCAATCACAAAAAAATGAAAATAACaaaa                      <  1:17038177/35‑1 (MQ=255)
              aTGACAGCAATCACAAAAAAATGAAAATAACaaaa                      <  1:2636638/35‑1 (MQ=255)
              aTGACAGCAATCACAAAAAAATGAAAATAACaaaa                      >  1:16240891/1‑35 (MQ=255)
                gACAGCAATCACAAAAAAATGAAAATAACAAAAag                    >  1:10766876/1‑35 (MQ=255)
                gACAGCAATCACAAAAAATGAAAATAACAAAAaga                   >  1:5293948/1‑35 (MQ=37)
                 aCAGCAATCACAAAAAAATGAAAATAACAAAAaga                   <  1:11011144/35‑1 (MQ=255)
                 aCAGCAATCACAAAAAAATGAAAATAACAAAAaga                   >  1:19529223/1‑35 (MQ=255)
                 aCAGCAATCACAAAAAAATGAAAATAACAAAAaga                   >  1:12210539/1‑35 (MQ=255)
                 aCAGCAATCACAAAAAAATGAAAATAACAAAAaga                   <  1:8218571/35‑1 (MQ=255)
                 aCAGCAATCACAAAAAAATGAAAATAACAAAAaga                   <  1:6870064/35‑1 (MQ=255)
                   aGCAATCACAAAAAAATGAAAATAACAAAAAgaga                 <  1:5158439/35‑1 (MQ=255)
                   aGCAATCACAAAAAAATGAAAATAACAAAAAgaga                 <  1:7427146/35‑1 (MQ=255)
                    gCAATCACAAAAAAATGAAAATAACAAAAAGAGaa                <  1:17096420/35‑1 (MQ=255)
                     cAATCACAAAAAAATGAAAATAACAAAAAGAGaaa               <  1:15861801/35‑1 (MQ=255)
                     cAATCACAAAAAAATGAAAATAACAAAAAGAGaaa               >  1:13456653/1‑35 (MQ=255)
                     cAATCACAAAAAAATGAAAATAACAAAAAGAGaaa               <  1:20197823/35‑1 (MQ=255)
                     cAATCACAAAAAAATGAAAATAACAAAAAGAGaaa               >  1:13666872/1‑35 (MQ=255)
                      aaTCACAAAAAAATGAAAATAACAAAAAGAGaaaa              >  1:2727237/1‑35 (MQ=255)
                      aaTCACAAAAAAATGAAAATAACAAAAAGAGaaaa              >  1:2922943/1‑35 (MQ=255)
                      aaTCACAAAAAAATGAAAATAACAAAAAGAGaaaa              <  1:10125518/35‑1 (MQ=255)
                      aaTCACAAAAAAATGAAAATAACAAAAAGAGaaaa              <  1:16396425/35‑1 (MQ=255)
                      aaTCACAAAAAAATGAAAATAACAAAAAGAGaaaa              >  1:8386388/1‑35 (MQ=255)
                       aTCACAAAAAAATGAAAATAACAAAAAGAGAAAac             <  1:4757901/35‑1 (MQ=255)
                        tCACAAAAAAATGAAAATAACAAAAAGAGAAAaca            <  1:9439242/35‑1 (MQ=255)
                        tCACAAAAAAATGAAAATAACAAAAAGAGAAAaca            <  1:12481622/35‑1 (MQ=255)
                        acacaaAAAAAaaaaaaaaaaaaaaagccacaaat            >  1:2278898‑M2/2‑11 (MQ=255)
                         cacaAAAAAATGAAAATAACAAAAAGAGAAAacac           >  1:3789553/1‑35 (MQ=255)
                         cacaAAAAAATGAAAATAACAAAAAGAGAAAacac           <  1:2317730/35‑1 (MQ=255)
                         cacaAAAAAATGAAAATAACAAAAAGAGAAAacac           >  1:6688490/1‑35 (MQ=255)
                         cacaAAAAAATGAAAATAACAAAAAGAGAAAacac           <  1:5618909/35‑1 (MQ=255)
                         cacaAAAAAATGAAAATAACAAAAAGAGAAAacac           >  1:4333990/1‑35 (MQ=255)
                          agaaaaaaaaaaaaaaaaaaaaaagccacaaatta          >  1:18032676‑M2/3‑9 (MQ=255)
                          acgAAAAAAaaaaaaaaaaaaaaagccacaaatta          >  1:13530190‑M2/1‑9 (MQ=255)
                          acgAAAAAAaaaaaaaaaaaaaaagccacaaatta          >  1:2221259‑M2/1‑9 (MQ=255)
                          acaAAAAAATGAAAATAACAAAAAGAGAAAACACt          >  1:12005394/1‑35 (MQ=255)
                          acaAAAAAATGAAAATAACAAAAAGAGAAAACACt          <  1:3504496/35‑1 (MQ=255)
                          aaaaaaaaaaaaaaaaaaaaaaaagccacaaatta          >  1:1513531‑M2/3‑9 (MQ=255)
                           cgaaaaaaaaaaaaaaaaaaaaagccacaaattaa         >  1:6410223‑M2/3‑8 (MQ=255)
                           caAAAAAATGAAAATAACAAAAAGAGAAAACACtt         >  1:4182365/1‑35 (MQ=255)
                           caAAAAAATGAAAATAACAAAAAGAGAAAACACtt         <  1:2546111/35‑1 (MQ=255)
                           caAAAAAATGAAAATAACAAAAAGAGAAAACACtt         <  1:18958319/35‑1 (MQ=255)
                            aaaaaaaTGAAAATAACAAAAAGAGAAAACACttt        >  1:10226536/1‑35 (MQ=255)
                            aaaaaaaTGAAAATAACAAAAAGAGAAAACACttt        >  1:10584364/1‑35 (MQ=255)
                            aaaaaaaTGAAAATAACAAAAAGAGAAAACACttt        >  1:18359209/1‑35 (MQ=255)
                            aaaaaaaTGAAAATAACAAAAAGAGAAAACACttt        >  1:16759114/1‑35 (MQ=255)
                            aaaaaaaTGAAAATAACAAAAAGAGAAAACACttt        <  1:16025618/35‑1 (MQ=255)
                             aaaaaaaaaaaaaaaaaaaaagccacaaattaaat       >  1:14118269‑M2/1‑6 (MQ=255)
                             aaaaaaTGAAAATAACAAAAAGAGAAAACACtttt       >  1:396768/1‑35 (MQ=255)
                             aaaaaaTGAAAATAACAAAAAGAGAAAACACtttt       <  1:15761004/35‑1 (MQ=255)
                              aaaaaaaaaaaaaaaaaaaagccacaaattaaata      >  1:9686595‑M2/1‑5 (MQ=255)
                              aaaaaaaaaaaaaaaaaaaagccacaaattaaata      >  1:11871196‑M2/1‑5 (MQ=255)
                              aaaaaTGAAAATAACAAAAAGAGAAAACACTTTTg      >  1:5752983/1‑35 (MQ=255)
                              aaaaaTGAAAATAACAAAAAGAGAAAACACTTTTg      <  1:7252809/35‑1 (MQ=255)
                               aaaaTGAAAATAACAAAAAGAGAAAACACTTTTGc     <  1:14641619/35‑1 (MQ=255)
                               aaaaTGAAAATAACAAAAAGAGAAAACACTTTTGc     >  1:2023507/1‑35 (MQ=255)
                               aaaaTGAAAATAACAAAAAGAGAAAAAACTTTTGc     <  1:18714388/35‑1 (MQ=255)
                                aaaTGAAAATAACAAAAAGAGAAAACACTTTTGcc    <  1:14187085/35‑1 (MQ=255)
                                aaaTGAAAATAACAAAAAGAGAAAACACTTTTGcc    <  1:13723378/35‑1 (MQ=255)
                                aaaTGAAAATAACAAAAAGAGAAAACACTTTTGcc    <  1:12773974/35‑1 (MQ=255)
                                 aaaaaaaaaaaaaaaaagccacaaattaaataaac   >  1:14144400‑M2/1‑2 (MQ=255)
                                 aaaaaaaaaaaaaaaaagccacaaattaaataaac   >  1:4655794‑M2/1‑2 (MQ=255)
                                 aaTGAAAATAACGAAAAGAGAAAACACTTTTGCCa   <  1:5844451/35‑1 (MQ=255)
                                 aaTGAAAATAACAAAAAGAGAAAACACTTTTGCCa   >  1:14531465/1‑35 (MQ=255)
                                 aaTGAAAATAACAAAAAGAGAAAACACTTTTGCCa   <  1:1447603/35‑1 (MQ=255)
                                  aaaaaaaaaaaaaaaagccacaaattaaataaacc  >  1:11227310‑M2/1‑1 (MQ=255)
                                  aTGAAAATAACAAAAAGAGAAAACACTTTTGCCAt  >  1:16285890/1‑35 (MQ=255)
                                  aTGAAAATAACAAAAAGAGAAAACACTTTTGCCAt  <  1:1636211/35‑1 (MQ=255)
                                  |                                  
AAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCAT  >  REL606/1714599‑1714667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.