New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2234598 =88 (0.860)15 (0.180) 5/38 NT 16.6% coding (538/1008 nt) yejK nucleoid‑associated protein NdpA
?REL606 3944634 = 81 (1.000)intergenic (+23/‑124) proM/aslB tRNA‑Pro/predicted regulator of arylsulfatase activity

Only 100 of 164 total aligned reads displayed.

CCTTCGCTGGCCCCGAGGAAATCCATAAAGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAA  >  REL606/2234564‑2234632
                                  |                                  
 cTTCGCTGTCCCCGAGGAAATCCATAAAGAAATcc                                   >  1:19475397/1‑35 (MQ=255)
 cTTCGCTGGCCCCGAGGAAATCCATAAAGAAATcc                                   >  1:14444153/1‑35 (MQ=255)
 cTTCGCTGGCCCCGAGGAAATCCATAAAGAAATcc                                   <  1:6297841/35‑1 (MQ=255)
 cTTCGCTGGCCCCGAGGAAATCCATAAAGAAATcc                                   <  1:1358518/35‑1 (MQ=255)
 cTTCGCTGGCCCCGAGGAAATCCATAAAGAAATcc                                   >  1:12642951/1‑35 (MQ=255)
  ttCGCTGGCCCCGAGGAAATCCATAAAGAAATCCg                                  <  1:6249333/35‑1 (MQ=255)
   tCGCTGGCCCCGAGGAAATCCATAAAGAAATCCGc                                 >  1:19325182/1‑35 (MQ=255)
   tCGCTGGCCCCGAGGAAATCCATAAAGAAATCCGc                                 >  1:11388239/1‑35 (MQ=255)
   tCGCTGGCCCAGAGGAAATCCATAAAGAAATCCGc                                 <  1:2869788/35‑1 (MQ=255)
    cGCTGGCCCCGAGGAAATCCATAAAGAAATCCGcc                                <  1:19032745/35‑1 (MQ=255)
    cGCTGGCCCCGAGGAAATCCATAAAGAAATCCGcc                                <  1:19812541/35‑1 (MQ=255)
    cGCTGGCCCCGAGGAAATCCATAAAGAAATCCGcc                                >  1:2560794/1‑35 (MQ=255)
    cGCTGGCCCCGAGGAAATCCATAAAGAAATCCGcc                                <  1:892287/35‑1 (MQ=255)
     gcaggCCCCGAGGAAATCCATAAAGAAATCCGCCa                               >  1:3753560/4‑35 (MQ=255)
     gCTGGCCCCGAGGAAATCCATAAAGAAATCCGCCa                               <  1:1702041/35‑1 (MQ=255)
     gCTGGCCCCGAGGAAATCCATAAAGAAATCCGCCa                               <  1:12077591/35‑1 (MQ=255)
     gCTGGCCCCGAGGAAATCCATAAAGAAATCCACCa                               <  1:15145256/35‑1 (MQ=255)
      cTGGCCCCGAGGAAATCCATAAAGAAATCCGCCAc                              >  1:20074319/1‑35 (MQ=255)
      cTGGCCCCGAGGAAATCCATAAAGAAATCCGCCAc                              >  1:1385258/1‑35 (MQ=255)
       tGGCCCCGAGGAAATCCATAAAGAAATCCGCCACt                             >  1:4987441/1‑35 (MQ=255)
       tGGCCCCGAGGAAATCCATAAAGAAATCCGCCACt                             >  1:14885765/1‑35 (MQ=255)
       tGGCCCCGAGGAAATCCATAAAGAAATCCGCCACt                             >  1:19025231/1‑35 (MQ=255)
        ggCCCCGAGGAAATCCATAAAGAAATCCGCCACtt                            >  1:15550226/1‑35 (MQ=255)
        ggCCCCGAGGAAATCCATAAAGAAATCCGCCACtt                            >  1:19596787/1‑35 (MQ=255)
        ggCCCCGAGGAAATCCATAAAGAAATCCGCCACtt                            >  1:6336987/1‑35 (MQ=255)
        ggCCCCGAGGAAATCCATAAAGAAATCCGCCACtt                            >  1:17534730/1‑35 (MQ=255)
         gCCCCGAGGAAATCCATAAAGAAATCCGCCACttt                           >  1:14725013/1‑35 (MQ=255)
          ccccGAGGAAATCCATAAAGAAATCCGCCACTTTg                          >  1:10368568/1‑35 (MQ=255)
           cccGAGGAAATCCATAAAGAAATCCGCCACTTTgc                         >  1:14762963/1‑35 (MQ=255)
           cccGAGGAAATCCATAAAGAAATCCGCCACTTTgc                         >  1:8302672/1‑35 (MQ=255)
           cccGAGGAAATCCATAAAGAAATCCGCCACTTTgc                         >  1:1228963/1‑35 (MQ=255)
            ccGAGGAAATCCATAAAGAAATCCGCCACTTTgcg                        >  1:15120968/1‑35 (MQ=255)
            ccGAGGAAATCCATAAAGAAATCCGCCACTTTgcg                        >  1:20159922/1‑35 (MQ=255)
             cGAGGAAATCCATAAAGAAATCCGCCACTTTgcgc                       >  1:2515401/1‑35 (MQ=255)
             cGAGGAAATCCATAAAGAAATCCGCCACTTTgcgc                       >  1:10117579/1‑35 (MQ=255)
              gAGGAAATCCATAAAGAAATCCGCCACTTTGCGcc                      >  1:1660692/1‑35 (MQ=255)
               aGGAAATCCATAAAGAAATCCGCCACTTTGCGccc                     >  1:18356654/1‑35 (MQ=255)
                ggAAATCCATAAAGAAATCCGCCACTTTGCGCCCt                    >  1:9171524/1‑35 (MQ=255)
                ggAAATCCATAAAGAAATCCGCCACTTTGCGCCCt                    >  1:1882690/1‑35 (MQ=255)
                ggAAATCCATAAAGAAATCCGCCACTTTGCGCCCt                    >  1:15704811/1‑35 (MQ=255)
                gaaaaTCAAAAAAAAACCCCGCCACTTTGCGCCCt                    <  1:322257/33‑1 (MQ=9)
                 gAAATCCATAAAGAAATCCGCCACTTTGCGCCCTa                   >  1:17723311/1‑35 (MQ=255)
                  aaaTCCATAAAGAAATCCGCCACTTTGCGCCCTAc                  >  1:4364647/1‑35 (MQ=255)
                  aaaTCCATAAAGAAATCCGCCACTTTGCGCCCTAc                  >  1:10353245/1‑35 (MQ=255)
                  aaaTCCATAAAGAAATCCGCCACTTTGCGCCCTAc                  >  1:14434324/1‑35 (MQ=255)
                  aaaTCCATAAAGAAATCCGCCACTTTGCGCCCTAc                  >  1:9242762/1‑35 (MQ=255)
                   aaTCCATAAAGAAATCCGCCACTTTGCGCCCTACt                 >  1:4229140/1‑35 (MQ=255)
                   aaTCCATAAAGAAATCCGCCACTTTGCGCCCTACt                 >  1:13114323/1‑35 (MQ=255)
                    aTCCATAAAGAAATCCTCCACTTTGCGCCCTACTc                >  1:17252662/1‑35 (MQ=255)
                    aTCCATAAAGAAATCCGCCACTTTGCGCCCTACTc                >  1:10167100/1‑35 (MQ=255)
                     tCCATAAAGAATTCCGCCACTTTGCGCCCTACTCg               >  1:17917281/1‑35 (MQ=255)
                      ccATAAAGAAATCCGCCACTTTGCGCCCTACTCGc              >  1:5335090/1‑35 (MQ=255)
                      caaaaaaaaaccCCGCCACTTTGCGCCCTACTCGc              >  1:10663182‑M1/13‑35 (MQ=255)
                      caaaaaaaaaccCCGCCACTTTGCGCCCTACTCGc              >  1:11226143‑M1/13‑35 (MQ=255)
                      aaaaaaaaaaccCCGCCACTTTGCGCCCTACTCGc              >  1:16498765‑M1/13‑35 (MQ=255)
                       caaaaaAAAACCCGCCACTTTGCGCCCTACTCGcc             <  1:4113726/32‑1 (MQ=21)
                       cATAAAGAAATCCGCCACTTTGCGCCCTACTCGcc             >  1:19431987/1‑35 (MQ=255)
                       aaaaaaaaaccCCGCCACTTTGCGCCCTACTCGcc             >  1:8309281‑M1/12‑35 (MQ=255)
                       aaaaaaGAAACCCGCCACTTTGCGCCCTACTCGcc             <  1:9210746/32‑1 (MQ=37)
                        ataaaaaaccCCGCCACTTTGCGCCCTACTCGccc            >  1:13727478‑M1/11‑35 (MQ=255)
                        aaaaaaaaccCCGCCACTTTGCGCCCTACTCGccc            >  1:13716782‑M1/11‑35 (MQ=255)
                        aaaaaGAACCCCGCCACTTTGCGCCCTACTCGccc            <  1:1992420/33‑1 (MQ=25)
                         aaaagaaccCCGCCACTTTGCGCCCTACTCGCCCt           >  1:2322133‑M1/10‑35 (MQ=255)
                         aaaagaaccCCGCCACTTTGCGCCCTACTCGCCCt           >  1:18114667‑M1/10‑35 (MQ=255)
                         aaaaaaaccCCGCCACTTTGCGCCCTACTCGCCCt           >  1:18394381‑M1/10‑35 (MQ=255)
                          aaaaaaccCCGCCACTTTGCGCCCTACTCGCCCtt          >  1:4739356‑M1/9‑35 (MQ=255)
                          aaaaaaacCCGCCACTTTGCGCCCTACTCGCCCtt          >  1:13411492‑M1/9‑35 (MQ=255)
                          aaaGAAATCCGCCACTTTGCGCCCTACTCGCCCtt          >  1:634866/1‑35 (MQ=255)
                          aaaGAAATCCGCCACTTTGCGCCCTACTCGCCCtt          >  1:8009485/1‑35 (MQ=255)
                          aaaGAAATCCGCCACTTTGCGCCCTACTCGCCCtt          >  1:2737340/1‑35 (MQ=255)
                           aagaaccCCGCCACTTTGCGCCCTACTCGCCCttt         >  1:11346253‑M1/8‑35 (MQ=255)
                           aagaaccCCGCCACTTTGCGCCCTACTCGCCCttt         >  1:18578463‑M1/8‑35 (MQ=255)
                           aaGAAATCCGCCACTTTGCGCCCTACTCGCCCttt         >  1:5415049/1‑35 (MQ=255)
                           aaGAAACCCGCCACTTTGCGCCCTACTCGCCCttt         <  1:14149863/35‑1 (MQ=255)
                            agaaccCCGCCACTTTGCGCCCTACTCGCCCTTTc        >  1:12339635‑M1/7‑35 (MQ=255)
                            aGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTc        >  1:6937996/1‑35 (MQ=255)
                            aGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTc        >  1:3116965/1‑35 (MQ=255)
                            aGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTc        >  1:3543029/1‑35 (MQ=255)
                             aaaccCCGCCACTTTGCGCCCTACTCGCCCTTTCa       >  1:871945‑M1/6‑35 (MQ=255)
                             aaaacCCGCCACTTTGCGCCCTACTCGCCCTTTCa       >  1:9010996‑M1/6‑35 (MQ=255)
                              aaccCCGCCACTTTGCGCCCTACTCGCCCTTTCAg      >  1:13995456‑M1/5‑35 (MQ=255)
                              aaccCCGCCACTTTGCGCCCTACTCGCCCTTTCAg      >  1:14425833‑M1/5‑35 (MQ=255)
                              aaaTCCGCCACTTTGCGCCCTACTCGCCCTTTCAg      >  1:13427963/1‑35 (MQ=255)
                              aaaTCCGCCACTTTGCGCCCTACTCGCCCTTTCAg      >  1:5775275/1‑35 (MQ=255)
                              aaaTCCGCCACTTTGCGCCCTACTCGCCCTTTCAg      >  1:18304968/1‑35 (MQ=255)
                              aaaTCCGCCACTTTGCGCCCTACTCGCCCTTTCAg      >  1:16918199/1‑35 (MQ=255)
                               accCCGCCACTTTGCGCCCTACTCGCCCTTTCAgg     >  1:6154315‑M1/4‑35 (MQ=255)
                               accCCGCCACTTTGCGCCCTACTCGCCCTTTCAgg     >  1:15854494‑M1/4‑35 (MQ=255)
                               aaTCCGCCACTTTGCGCCCTACTCGCCCTTTCAgg     >  1:3679952/1‑35 (MQ=255)
                               aaTCCGCCACTTTGCGCCCTACTCGCCCTTTCAgg     >  1:3406033/1‑35 (MQ=255)
                                ccCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGa    >  1:7259333‑M1/3‑35 (MQ=255)
                                aTCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGa    >  1:10546175/1‑35 (MQ=255)
                                aTCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGa    >  1:4642057/1‑35 (MQ=255)
                                aTCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGa    >  1:9578006/1‑35 (MQ=255)
                                 tCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGaa   >  1:5622578/1‑35 (MQ=255)
                                 tCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGaa   >  1:12021527/1‑35 (MQ=255)
                                 cCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGaa   >  1:7706729‑M1/2‑35 (MQ=255)
                                  CCGCCACTTTGCGCCCTACTCGCCCTTTCAGGaaa  >  1:8165639‑M1/1‑35 (MQ=255)
                                  CCGCCACTTTGCGCCCTACTCGCCCTTTCAGGaaa  >  1:12549945‑M1/1‑35 (MQ=255)
                                  CCGCCACTTTGCGCCCTACTCGCCCTTTCAGGaaa  <  1:16867054‑M1/35‑1 (MQ=255)
                                  |                                  
CCTTCGCTGGCCCCGAGGAAATCCATAAAGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAA  >  REL606/2234564‑2234632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.