New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3411408 =52 (0.510)21 (0.310) 4/32 NT 37.7% coding (302/1023 nt) yheT predicted hydrolase
?REL606 3433812 = NA (NA)noncoding (418/768 nt) IS1 repeat region

Only 100 of 1046 total aligned reads displayed.

GCCCACGGTCTGGTTGAGGCGGCGCAAAAGCGCGGCTGGCTGGGCGTGGTGATGCATTTTCGCGGATGC  >  REL606/3411374‑3411442
                                  |                                  
gCCCACGGTCTGGTTGAGGCGGCGCAAAAGCGCgg                                    <  1:914635/35‑1 (MQ=255)
cagtggggctatgtctgggctaaatcgcgccagcg                                    <  1:4109429‑M1/1‑1 (MQ=255)
cagtggggctatgtcggggctaaatcgcgcccgcg                                    <  1:3894076‑M1/1‑1 (MQ=255)
cagtggggctatgtcggggctaaatcgcgcccgcg                                    <  1:6304791‑M1/1‑1 (MQ=255)
cagtggggctatgtcggggctaaatcgcgccagcg                                    <  1:16837220‑M1/1‑1 (MQ=255)
cagtggggctatgtcggggctaaatcgcgccagcg                                    >  1:8723446‑M1/35‑35 (MQ=255)
cagtggggctatgtcggggctaaatcgcgccagcg                                    <  1:13306201‑M1/1‑1 (MQ=255)
cagtggggctatgtcggggctaaatcgcgccagcg                                    >  1:12798196‑M1/35‑35 (MQ=255)
cagtggggctatgtcggggctaaatcgcgccagcg                                    >  1:5908595‑M1/35‑35 (MQ=255)
cagtggggctatgtcggggctaaatcgcgccagcg                                    >  1:10004200‑M1/35‑35 (MQ=255)
cagtggggctatgtcggggctaaatcgcgccagcg                                    <  1:1098257‑M1/1‑1 (MQ=255)
 agtggggctatgtcggggctaaatcgcgccagcgc                                   >  1:16411454‑M1/34‑35 (MQ=255)
 agtggggctatgtcggggctaaatcgcgccagcgc                                   >  1:17046916‑M1/34‑35 (MQ=255)
 agtggggctatgtcggggctaaatcgcgccagcgc                                   >  1:11903040‑M1/34‑35 (MQ=255)
 agtggggctatgtcggggctaaatcgcgccagcgc                                   <  1:1151208‑M1/2‑1 (MQ=255)
 agtggggctatgtcggggctaaatcgccccagcgc                                   <  1:16557691‑M1/2‑1 (MQ=255)
  gtggggctatgtcggggctaaatcgcgccagcgct                                  >  1:12254333‑M1/33‑35 (MQ=255)
  gtggggctatgtcggggctaaatcgcgccagcgct                                  >  1:2663871‑M1/33‑35 (MQ=255)
  gtggggctatgtcggggctaaatcgcgccagcgct                                  >  1:3002528‑M1/33‑35 (MQ=255)
  gtggggctatgtcggggctaaatcgcgccagcgct                                  <  1:15549799‑M1/3‑1 (MQ=255)
  gtggggctatgtaggggctaaatcgcgccagcgct                                  >  1:10190832‑M1/33‑35 (MQ=255)
   tgggtctatgtcggggctaaatcgcgccagcgctg                                 >  1:18275259‑M1/32‑35 (MQ=255)
   tggggctatgtcggggctaaatcgcgccagcgctg                                 >  1:20393844‑M1/32‑35 (MQ=255)
   tggggctatgtcggggctaaatcgcgccagcgctg                                 >  1:2140410‑M1/32‑35 (MQ=255)
   tggggctatgtcggggctaaatcgcgccagcgctg                                 >  1:248323‑M1/32‑35 (MQ=255)
   tggggctatgtcggggctaaatcgcgccagcgctg                                 >  1:17681700‑M1/32‑35 (MQ=255)
   tggggctatgtcggggctaaatcgcgccagcgctg                                 >  1:7780359‑M1/32‑35 (MQ=255)
   tggggctatgtcggggctaaatcgcgccagcgctg                                 >  1:7485055‑M1/32‑35 (MQ=255)
   tggggctatgtcggggctaaatcgcgacagcgctg                                 >  1:8240268‑M1/32‑35 (MQ=255)
   cgcGGTCTGGTTGAGGCGGCGCAAAAGCGCggctg                                 <  1:2825425/33‑1 (MQ=255)
   cACGGTCTGGTTGATGCGGCGCAAAAGCGCggctg                                 >  1:18496835/1‑35 (MQ=255)
   cACGGTCTGGTTGAGGCGGCGCAAAAGCGCggctg                                 <  1:461920/35‑1 (MQ=255)
    gggtctatgtcggggctaaatcgcgccagcgctgg                                <  1:16017119‑M1/5‑1 (MQ=255)
    ggggctatgtcggggctaaatcgcgcccgcgctgg                                <  1:6050360‑M1/5‑1 (MQ=255)
    ggggctatgtcggggctaaatcgcgcccgcgctgg                                <  1:14382933‑M1/5‑1 (MQ=255)
    ggggctatgtcggggctaaatcgcgccagcgctgg                                >  1:7970008‑M1/31‑35 (MQ=255)
    ggggctatgtcggggctaaatcgcgccagcgctgg                                >  1:5070655‑M1/31‑35 (MQ=255)
    ggggctatgtcggggctaaatcgcgccagcgctgg                                >  1:11112066‑M1/31‑35 (MQ=255)
    ggggctatgtcggggctaaatcgcgccagcgctgg                                >  1:6436149‑M1/31‑35 (MQ=255)
    ggggctatgtcggggctaaatcgcgccagcgctgg                                >  1:13201652‑M1/31‑35 (MQ=255)
    ggggctatgtcggggctaaatcgcgccagcgctgg                                >  1:9306510‑M1/31‑35 (MQ=255)
    ggggctatgtcggggctaaatcgcgccagcgctgg                                >  1:13802233‑M1/31‑35 (MQ=255)
    ggggctatgtcggggctaaatcgcgccagcgctgg                                >  1:10535301‑M1/31‑35 (MQ=255)
    ggggctatgtcggggctaaatcgcgccagcgctgg                                >  1:12119862‑M1/31‑35 (MQ=255)
     gggctatgtcggggctaaatcgcgccagcgctggc                               >  1:19371541‑M1/30‑35 (MQ=255)
     gggctatgtcggggctaaatcgcgccagcgctggc                               >  1:12415929‑M1/30‑35 (MQ=255)
     gggctatgtcggggctaaatcgcgccagcgctggc                               >  1:5682332‑M1/30‑35 (MQ=255)
     gggctatgtcggggctaaatcgcgccagcgctggc                               >  1:19219057‑M1/30‑35 (MQ=255)
     gggctatgtcggggctaaatcgcgccagcgctggc                               >  1:14001160‑M1/30‑35 (MQ=255)
     gggctatgtcggggctaaatcgcgccagcgctggc                               <  1:3472648‑M1/6‑1 (MQ=255)
     gggctatgtcggggctaaatcgcgccagcgctggc                               >  1:15802256‑M1/30‑35 (MQ=255)
     gggctatgtcggggctaaatcgcgccagcgctggc                               <  1:3708031‑M1/6‑1 (MQ=255)
     gggctatgtcggggctaaaacgcgccagcgctggc                               <  1:17428719‑M1/6‑1 (MQ=255)
     cGGTCTGGTTGAGGCGGCGCAAAAGCGCggctggc                               >  1:14190978/1‑35 (MQ=255)
      ggctatgtcggggctaaatcgcgccagcgctggct                              >  1:6191252‑M1/29‑35 (MQ=255)
      ggctatgtcggggctaaatcgcgccagcgctggct                              >  1:4758613‑M1/29‑35 (MQ=255)
      ggctatgtcggggctaaatcgcgccagcgctggct                              >  1:4288974‑M1/29‑35 (MQ=255)
      ggctatgtcggggctaaatcgcgccagcgctggct                              >  1:1468694‑M1/29‑35 (MQ=255)
      ggctatgtcggggctaaatcgcgccagcgctggct                              >  1:16169386‑M1/29‑35 (MQ=255)
      ggctatgtcggggctaaatcgcgccagcgctggct                              >  1:7639254‑M1/29‑35 (MQ=255)
      ggTCTGGTTGAGGCGGCGCAAAAGCGCggctggct                              <  1:10668642/35‑1 (MQ=255)
       gctatgtcggggctaaatcgcgcccgcgctggctg                             <  1:15407499‑M1/8‑1 (MQ=255)
       gctatgtcggggctaaatcgcgcccgcgctggctg                             <  1:1508652‑M1/8‑1 (MQ=255)
       gctatgtcggggctaaatcgcgccagcgctggctg                             >  1:17290656‑M1/28‑35 (MQ=255)
       gctatgtcggggctaaatcgcgccagcgctggctg                             >  1:858666‑M1/28‑35 (MQ=255)
       gctatgtcggggctaaatcgcgccagcgctggctg                             <  1:658364‑M1/8‑1 (MQ=255)
       gctatgtcggggctaaatcgcgccagcgctggctg                             <  1:11311921‑M1/8‑1 (MQ=255)
       gctatgtcggggctaaatcgcgccagcgctggctg                             >  1:555339‑M1/28‑35 (MQ=255)
       gctatgtcggggctaaatcgcgccagcgctggctg                             >  1:1174390‑M1/28‑35 (MQ=255)
        ctatgtcggggctaaatcgcgcccgcGctggctgg                            <  1:20152272‑M1/9‑1 (MQ=255)
        ctatgtcggggctaaatcgcgccagcGctggctgg                            <  1:13020457‑M1/9‑1 (MQ=255)
        ctatgtcggggctaaatcgcgccagcGctggctgg                            <  1:19497918‑M1/9‑1 (MQ=255)
        ctatgtcggggctaaatcgcgccagcGctggctgg                            <  1:4437632‑M1/9‑1 (MQ=255)
        ctatgtcggggctaaatcgcgccagcGctggctgg                            <  1:6896608‑M1/9‑1 (MQ=255)
        ctatgtcggggctaaatcgcgccagcGctggctgg                            <  1:8411285‑M1/9‑1 (MQ=255)
         tatgtcggggctaaatcgcgcccgcGCTGGCTggg                           <  1:1869940‑M1/10‑1 (MQ=255)
         tatgtcggggctaaatcgcgcccgcGCTGGCTggg                           <  1:10316838‑M1/10‑1 (MQ=255)
          atgtcggggctaaatcgcgccagcGCTGGCtgggt                          <  1:9847370‑M1/11‑2 (MQ=255)
          atgtcggggctaaatcgcgccagcGCTGGCtgggt                          <  1:4918500‑M1/11‑2 (MQ=255)
          atgtcggggctaaatcgcgccagcGCTGGCtgggg                          <  1:12609140‑M1/11‑2 (MQ=255)
          atgtcggggctaaatcgcgccagcGCTGGCtgggg                          <  1:9540862‑M1/11‑2 (MQ=255)
          atgtcggggctaaatcgcgccagcGCTGGCtgggg                          <  1:8119098‑M1/11‑2 (MQ=255)
          atgtcggggctaaatcgcgccagcGCTGGCtgggg                          <  1:19879899‑M1/11‑2 (MQ=255)
          atgtcggggctaaatcgcgccagcGCTGGCtgggg                          <  1:5351140‑M1/11‑2 (MQ=255)
          atgtcggggctaaatcgcgccagcGCTGGCtgggg                          <  1:7131678‑M1/11‑2 (MQ=255)
          atgtcggggctaaatcgcgccagcGCTGGCtgggg                          <  1:2287426‑M1/11‑2 (MQ=255)
           tgtcggggctaaatcgcgccagcGCTGGctggggt                         <  1:20332747‑M1/12‑3 (MQ=255)
           tgtcggggctaaatcgcgccagcGCTGGctggggt                         <  1:3224373‑M1/12‑3 (MQ=255)
           tgtcggggctaaatcgcgccagcGCTGGctggggg                         <  1:18980312‑M1/12‑3 (MQ=255)
           tgtcggggctaaatcgcgccagcGCTGGctggggg                         <  1:18123189‑M1/12‑3 (MQ=255)
            gtcggggctaaatcgcgccagcGCTGgctggggtt                        <  1:8899649‑M1/13‑4 (MQ=255)
            gtcggggctaaatcgcgccagcGCTGgctggggtg                        <  1:14988338‑M1/13‑4 (MQ=255)
            gtcggggctaaatcgcgccagcGCTGgctggggtg                        <  1:16737166‑M1/13‑4 (MQ=255)
            gtcggggctaaatcgcgccagcGCTGgctggggtg                        <  1:17967037‑M1/13‑4 (MQ=255)
            gtcggggctaaatcgcgccagcGCTGgctgggggg                        <  1:15270471‑M1/13‑4 (MQ=255)
            gtcggggctaaatcgcgccagcGCTGgctgggggg                        <  1:9032668‑M1/13‑4 (MQ=255)
            gtcggggctaaatcgcgccagcGCTGgctgggggg                        <  1:1968906‑M1/13‑4 (MQ=255)
               gAGGCGGCGCAAAAGCTCGGCTGGGGGGGCggggg                     >  1:9756466/1‑34 (MQ=16)
                     gcgcAAAAGCGCGGCTGGCTGGGCGTGGTGATGCa               <  1:13550990/35‑1 (MQ=255)
                                 ggctggctGGGCGTGGTGATGCATTTTCGCGGATg   >  1:7429696/1‑35 (MQ=255)
                                  |                                  
GCCCACGGTCTGGTTGAGGCGGCGCAAAAGCGCGGCTGGCTGGGCGTGGTGATGCATTTTCGCGGATGC  >  REL606/3411374‑3411442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.