Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 546,191 IS1 (+) +9 bp 100% coding (346‑354/384 nt) ybcQ → predicted antitermination protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 546191 =0 (0.000)77 (0.780) 35/46 NT 100% coding (346/384 nt) ybcQ predicted antitermination protein
?REL606 546932 = NA (NA)noncoding (768/768 nt) IS1 repeat region
* ? REL606 = 5461990 (0.000)125 (1.220) 42/48 NT 100% coding (354/384 nt) ybcQ predicted antitermination protein
?REL606 = 547699 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 338 total aligned reads displayed.

AAGGGATGTTAATGGCATTAGATATCCGGTTAGAGATGGATATCGTTGTTAATAACTCTAATTAATATG  >  REL606/546165‑546233
                                  |                                  
 aGGGATGTTAATGGCATTAGATATCCGGTTAGAGg                                   <  1:10448072‑M1/35‑2 (MQ=255)
 aGGGATGTTAATGGCATTAGATATCCGGTTAGAGg                                   >  1:17381956‑M1/1‑34 (MQ=255)
  tatcaataagttggagtcattaccCGGTTAGAGAt                                  >  1:812012‑M1/25‑35 (MQ=255)
  tatcaataagttggagtcattaccCGGTTAGAGAt                                  >  1:2340821‑M1/25‑35 (MQ=255)
  tatcaataagttggagtcattaccCGGTTAGAGAt                                  >  1:12184504‑M1/25‑35 (MQ=255)
  gggATGTTAATGGCATTAGATATCCGGTTAGAGgg                                  <  1:9842563‑M1/35‑3 (MQ=255)
  gggATGTTAATGGCATTAGATATCCGGTTAGAGgg                                  >  1:19374848‑M1/1‑33 (MQ=255)
  gggATGTTAATGGCATTAGATATCCGGTTAGAGgg                                  >  1:13454755‑M1/1‑33 (MQ=255)
   ggATGTTAATGGCATTAGATATCCGGTTAGAGggg                                 >  1:4163813‑M1/1‑32 (MQ=255)
    gATGTTAATGGCATTAGATATCCGGTTAGAGggtg                                >  1:15195354‑M1/1‑31 (MQ=255)
    gATGTTAATGGCATTAGATATCCGGTTAGAGggtg                                >  1:7253375‑M1/1‑31 (MQ=255)
    gATGTTAATGGCATTAGATATCCGGTTAGAGggtg                                <  1:3390104‑M1/35‑5 (MQ=255)
     caataagttggagtcattaccCGGTTAGAGATGGa                               >  1:5692580‑M1/22‑35 (MQ=255)
     aTGTTAATGGCATTAGATATCCGGTTAGAGggtga                               >  1:8210915‑M1/1‑30 (MQ=255)
     aTGTTAATGGCATTAGATATCCGGTTAGAGggtga                               <  1:13840325‑M1/35‑6 (MQ=255)
      tGTTAATGGCATTAGATATCCGGTTAGAGggtgat                              >  1:20326258‑M1/1‑29 (MQ=255)
      aataagttggagtcattaccCGGTTAGAGATGGat                              >  1:16912535‑M1/21‑35 (MQ=255)
        ttAATGGCATTAGATATCCGGTTAGAGggtgatgc                            <  1:14082116‑M1/35‑9 (MQ=255)
        taagttggagtcattaccCGGTTAGAGATGGatat                            >  1:9500860‑M1/19‑35 (MQ=255)
        taagttggagtcattaccCGGTTAGAGATGGatat                            <  1:12598689‑M1/17‑1 (MQ=255)
        taagttggagtcattaccCGGTTAGAGATGGatat                            >  1:1503437‑M1/19‑35 (MQ=255)
        taagttggagtcattaccCGGTTAGAGATGGatat                            <  1:718105‑M1/17‑1 (MQ=255)
          agttggagtcattaccCGGTTAGAGATGGATATCg                          >  1:4494967‑M1/17‑35 (MQ=255)
          agttggagtcattaccCGGTTAGAGATGGATATCg                          >  1:16099180‑M1/17‑35 (MQ=255)
          agttggagtcattaccCGGTTAGAGATGGATATCg                          <  1:17793904‑M1/19‑1 (MQ=255)
           aTGGCATTAGATATCCGGTTAGAGggtgatgctgc                         <  1:14464090‑M1/35‑12 (MQ=255)
            ttggagtcattaccCGGTTAGAGATGGATATCgtt                        >  1:4776112‑M1/15‑35 (MQ=255)
            ttggagtcattaccCGGTTAGAGATGGATATCgtt                        >  1:16145761‑M1/15‑35 (MQ=255)
            tGGCATTAGATATCCGGTTAGAGggtgatgctgcc                        <  1:16594383‑M1/35‑13 (MQ=255)
             tggagtcattaccCGGTTAGAGATGGATATCgttg                       >  1:8424670‑M1/14‑35 (MQ=255)
              gCATTAGATATCCTGTTAGAGggtgatgctgccaa                      >  1:15458656‑M1/1‑21 (MQ=255)
              gCATTAGATATCCGGTTAGAGggtgatgctgccaa                      >  1:11352824‑M1/1‑21 (MQ=255)
               cATTAGATATCCGGTTAGAGggtgatgctgccaac                     >  1:10197524‑M1/1‑20 (MQ=255)
                agtcattaccCGGTTAGAGATGGATATCGTTGTta                    <  1:18740879‑M1/25‑1 (MQ=255)
                aTTAGATATCCGGTTAGAGggtgatgctgccaact                    >  1:554627‑M1/1‑19 (MQ=255)
                 ttAGATATCCGGTTAGAGggtgatgctgccaactt                   <  1:4592960‑M1/35‑18 (MQ=255)
                 ttAGATATCCGGTTAGAGggtgatgctgccaactt                   <  1:651350‑M1/35‑18 (MQ=255)
                 ttAGATATCCGGTTAGAGggtgatgctgccaactt                   <  1:11814558‑M1/35‑18 (MQ=255)
                  tcattaccCGGTTAGAGATGGATATCGTTGTtaat                  >  1:19468198‑M1/9‑35 (MQ=255)
                  tcagtaccCGGTTAGAGATGGATATCGTTGTtaat                  >  1:12414211‑M1/9‑35 (MQ=255)
                  tAGATATCCGGTTAGAGggtgatgctgccaactta                  >  1:3963589‑M1/1‑17 (MQ=255)
                   aGATATCCGGTTAGAGggtgatgctgccaacttac                 >  1:5264795‑M1/1‑16 (MQ=255)
                   aGATATCCGGTTAGAGggtgatgctgccaacttac                 >  1:261337‑M1/1‑16 (MQ=255)
                   aGATATCCGGTTAGAGggtgatgctgccaacttac                 >  1:10028640‑M1/1‑16 (MQ=255)
                   aGATATCCGGTTAGAGggtgatgctgccaacttac                 <  1:14027416‑M1/35‑20 (MQ=255)
                    gATATCCGGTTAGAGggtgatgctgccaacttact                >  1:9645306‑M1/1‑15 (MQ=255)
                     ttaccCGGTTAGAGATGGATATCGTTGTTAATAAc               <  1:8819139‑M1/30‑1 (MQ=255)
                     atatCCGGTTAGAGggtgatgctgccaacttactg               >  1:12804802‑M1/1‑14 (MQ=255)
                     atatCCGGTTAGAGggtgatgctgccaacttactg               <  1:9433332‑M1/35‑22 (MQ=255)
                      tatCCGGTTAGAGggtgatgctgccaacttactga              >  1:3063595‑M1/1‑13 (MQ=255)
                      tatCCGGTTAGAGggtgatgctgccaacttactga              >  1:18697252‑M1/1‑13 (MQ=255)
                      tatCCGGTTAGAGggtgatgctgccaacttactga              <  1:14620458‑M1/35‑23 (MQ=255)
                      taccCGGTTAGAGATGGATATCGTTGTTAATAAct              >  1:3717577‑M1/5‑35 (MQ=255)
                       atCCGGTTAGAGggtgatgctgccaacttactgat             <  1:3201096‑M1/35‑24 (MQ=255)
                       accCGGTTAGAGATGGATATCTTTGTTAATAActc             <  1:7397293‑M1/32‑1 (MQ=255)
                        tCCGGTTAGAGggtgatgctgccaacttactgatt            <  1:18517505‑M1/35‑25 (MQ=255)
                        tCCGGTTAGAGggtgatgctgccaacttactgatt            <  1:211641‑M1/35‑25 (MQ=255)
                        tCCGGTTAGAGggtgatgctgccaacttactgatt            <  1:10716841‑M1/35‑25 (MQ=255)
                          cGGTTAGGGATGGATATCGTTGTTAATAACTCtaa          <  1:17858787/35‑1 (MQ=255)
                          cGGTTAGAGggtgatgctgccaacttactgattta          >  1:6854476‑M1/1‑9 (MQ=255)
                          cGGTTAGAGggtgatgctgccaacttactgattta          >  1:19944545‑M1/1‑9 (MQ=255)
                          cGGTTAGAGATGGATATCGTTGTTAATAACTCtaa          <  1:12074632/35‑1 (MQ=255)
                           ggTTAGAGggtgatgctgccaacttactgatttag         <  1:17629856‑M1/35‑28 (MQ=255)
                           ggTTAGAGggtgatgctgccaacttactgatttag         >  1:13259159‑M1/1‑8 (MQ=255)
                           ggTTAGAGggtgatgctgccaacttactgatttag         >  1:7472802‑M1/1‑8 (MQ=255)
                           ggTTAGAGggtgatgctgccaacttactgatttag         >  1:20413730‑M1/1‑8 (MQ=255)
                           ggTTAGAGggtgatgctgccaacttactgatttag         <  1:13118631‑M1/35‑28 (MQ=255)
                           ggTTAGAGggtgatgctgccaacttactgatttag         <  1:19807052‑M1/35‑28 (MQ=255)
                           ggTTAGAGATGGATATCGTTGTTAATAACTCtaat         >  1:10814710/1‑35 (MQ=255)
                            gTTAGAGggtgatgctgccaacttactgatttagt        >  1:14155196‑M1/1‑7 (MQ=255)
                             ttAGAGggtgatgctgccaacttactgatttagtg       <  1:20546688‑M1/35‑30 (MQ=255)
                             ttAGAGggtgatgctgccaacttactgatttagtg       >  1:15950854‑M1/1‑6 (MQ=255)
                             ttAGAGATGGATATCGTTGTTAATAACTCtaatta       >  1:19094245/1‑35 (MQ=255)
                             ttAGAGATGGATATCGTTGTTAATAACTCtaatta       <  1:16783089/35‑1 (MQ=255)
                             ttAGAGATGGATATCGTTGTTAATAACTCtaatta       >  1:430844/1‑35 (MQ=255)
                              tAGAGggtgatgctgccaacttactgatttagtgt      >  1:16296963‑M1/1‑5 (MQ=255)
                              tAGAGATGGATATCGTTGTTAATAACTCtaattaa      <  1:15704812/35‑1 (MQ=255)
                               agagggtgatgctgccaacttactgatttagtgta     >  1:14813104‑M1/1‑4 (MQ=255)
                               agagggtgatgctgccaacttactgatttagtgta     <  1:9086983‑M1/35‑32 (MQ=255)
                               agagggtgatgctgccaacttactgatttagtgta     <  1:2778906‑M1/35‑32 (MQ=255)
                               agagATGGATATCGTTGTTAATAACTCtaattaat     >  1:896855/1‑35 (MQ=255)
                                gagggtgatgctgccaacttactgatttagtgtat    >  1:18114739‑M1/1‑3 (MQ=255)
                                 agggtgatgcttccaacttactgatttagtgtatg   >  1:2898119‑M1/1‑2 (MQ=255)
                                 agggtgatgctgccaacttactgatttagtgtatg   >  1:18061008‑M1/1‑2 (MQ=255)
                                 agaTGGATATCGTTGTTAATAACTCTAATTAatat   <  1:17457367/35‑1 (MQ=255)
                                 agaTGGATATCGTTGTTAATAACTCTAATTAatat   >  1:19575688/1‑35 (MQ=255)
                                  gggtgatgctgccaacttactgatttagtgtatta  >  1:20056477‑M1/1‑1 (MQ=255)
                                  gggtgatgctgccaacttactgatttagtgtatga  >  1:18280511‑M1/1‑1 (MQ=255)
                                  gggtgatgctgccaacttactgatttagtgtatga  >  1:11427945‑M1/1‑1 (MQ=255)
                                  gggtgatgctgccaacttactgatttagtgtatga  <  1:18933776‑M1/35‑35 (MQ=255)
                                  gggtgatgctgccaacttactgatttagtgtatga  >  1:9176348‑M1/1‑1 (MQ=255)
                                  gggtgatgctgccaacttactgatttagtgtatga  >  1:8673679‑M1/1‑1 (MQ=255)
                                  gggtgatgctgccaacttactgatttagtgtatga  <  1:7847245‑M1/35‑35 (MQ=255)
                                  gggtgatgctgccaacttactgatttagtgtatga  >  1:1367880‑M1/1‑1 (MQ=255)
                                  gggtgatgctgccaacttactgatttagtgtatga  <  1:3498460‑M1/35‑35 (MQ=255)
                                  gggtgatgctgccaacttactgatttagtgtatga  >  1:10950583‑M1/1‑1 (MQ=255)
                                  gggtgatgctgccaacttactgatttagtgtatga  >  1:6125371‑M1/1‑1 (MQ=255)
                                  gggtgatgctgccaacttactgatttagtgtatga  <  1:5894306‑M1/35‑35 (MQ=255)
                                  gggtgatgctgccaacttactgatttagtgtatga  <  1:15344964‑M1/35‑35 (MQ=255)
                                  gggtcatgctgccaacttactgatttagtgtatga  <  1:4526461‑M1/35‑35 (MQ=255)
                                  |                                  
AAGGGATGTTAATGGCATTAGATATCCGGTTAGAGATGGATATCGTTGTTAATAACTCTAATTAATATG  >  REL606/546165‑546233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.