New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3281469 =113 (1.100)21 (0.220) 7/44 NT 18.2% coding (62/288 nt) yhbH predicted ribosome‑associated, sigma 54 modulation protein
?REL606 = 4043982 85 (0.900)coding (42/1404 nt) yihO predited transporter

GGTCAAAATATTGCTCAAGTTTGGCAAATTTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3281504‑3281469
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGAAAAAATCGCCTATGGTATGGGCGACGTTGGT  <  REL606/4043982‑4043949
                                                                      
GGTCAAAATATTGCTCAAGTTTGGCAAATTTGGCT                                     >  1:10069788/1‑35
GGTCAAAATATTGCTCAAGTTTGGCAAATTTGGCT                                     >  1:8824707/1‑35
GGTCAAAATATTGCTCAAGTTTGGCAAATTTGGCT                                     >  1:19663820/1‑35
GGTCAAAATATTGCTCAAGTTTGGCAAATTTGGCT                                     >  1:11813290/1‑35
GGTCAAAATATTGCTCAAGTTTGGCAAATTTGGCT                                     <  1:7163442/35‑1
GGTCAAAATATTGCTCAAGTTTGGCAAATTTGGCT                                     >  1:1340365/1‑35
GGTCAAAATATTGCTCAAGTTTGGCAAATTTGGCT                                     <  1:8417392/35‑1
GGTCAAAATATTGCTCAAGTTTGGCAAATTTGGCT                                     <  1:17360505/35‑1
GGTCAAAATATTGCTCAAGTTTGGCAAATTTGGCT                                     <  1:5833547/35‑1
 gtaAAAATATTGCTCAAGTTTGGCAAATTTGGCTG                                    <  1:14940784/32‑1
 GTCAAAATATTGCTCAAGTTTGGCAAATTTGGCTG                                    >  1:4228198/1‑35
 GTCAAAATATTGCTCAAGTTTGGCAAATTTGGCTG                                    <  1:11015315/35‑1
 GTCAAAATATTGCTCAAGTTTGGCAAATTTGGCTG                                    >  1:19329214/1‑35
 GTCAAAATATTGCTCAAGTTTGGCAAATTTGGCTG                                    >  1:7751660/1‑35
 GTCAAAATATTGCTCAAGTTTGGCAAATTTGGCTG                                    >  1:18534189/1‑35
 GTCAAAATATTGCTCAAGTTTGGCAAATTTGGCTG                                    <  1:16903856/35‑1
   CAAAATATTGCTCAAGTTTGGCAAATTTGGCTGGa                                  >  1:588280/1‑34
   CAAAATATTGCTCAAGTTTGGCAAATTTGGCTGGa                                  >  1:12902545/1‑34
   CAAAATATTGCTCAAGTTTGGCAAATTTGGCTGGa                                  >  1:10888773/1‑34
   CAAAATATTGCTCAAGTTTGGCAAATTTGGCTGGG                                  >  1:16189878/1‑35
   CAAAATATTGCTCAAGTTTGGCAAATTTGGCTGGG                                  >  1:18123752/1‑35
   CAAAATATTGCTCAAGTTTGGCAAATTTGGCTGGG                                  >  1:5664923/1‑35
    AAAATATTGCTCAAGTTTGGCAAATTTGGCTGGGA                                 >  1:8675197/1‑35
    AAAATATTGCTCAAGTTTGGCAAATTTGGCTGGGA                                 >  1:10826747/1‑35
     AAATATTGCTCAAGTTTGGCAAATTTGGCTGGGAg                                >  1:2209296/1‑34
     AAATATTGCTCAAGTTTGGCAAATTTGGCTGGGAc                                >  1:10845657/1‑34
     AAATATTGCTCAAGTTTGGCAAATTTGGCTGGGAA                                >  1:19362022/1‑35
      AATATTGCTCAAGTTTGGCAAATTTGGCTGGGAAA                               >  1:17865687/1‑35
       ATATTGCTCAAGTTTGGCAAATTTGGCTGGGACAA                              >  1:7973578/1‑35
       ATATTGCTCAAGTTTGGCAAATTTGGCTGGGACAA                              >  1:1606401/1‑35
       ATATTGCTCAAGTTTGGCAAATTTGGCTGGGAAAA                              >  1:9043253/1‑35
        TATTGCTCAAGTTTGGCAAATTTGGCTGGGACAAA                             >  1:14345810/1‑35
        TATTGCTCAAGTTTGGCAAATTTGGCTGGGACAAA                             >  1:625610/1‑35
        TATTGCTCAAGTTTGGCAAATTTGGCTGGGAAAAA                             >  1:9328863/1‑35
        TATTGCTCAAGTTTGGCAAATTTGGCTGGAAAAAA                             >  1:6156943/1‑35
         ATTGCTCAAGTTTGGCAAATTTGGCTGGGAAAAAA                            >  1:4908655/1‑35
          TTGCTCAAGTTTGGCAAATTTGGCTGGGACAAAAT                           >  1:12864044/1‑35
          TTGCTCAAGTTTGGCAAATTTGGCTGGGACAAAAT                           >  1:4785506/1‑35
          TTGCTCAAGTTTGGCAAATTTGGCTGGGACAAAAT                           >  1:6241117/1‑35
          TTGCTCAAGTTTGGCAAATTTGGCTGGAAAAAAAT                           >  1:924299/1‑35
           TGCTCAAGTTTGGCAAATTTGGCTGGGACAAAATa                          >  1:2775335/1‑34
           TGCTCAAGTTTGGCAAATTTGGCTGGGACAAAATC                          >  1:5965406/1‑35
            GCTCAAGTTTGGCAAATTTGGCTGGGACAAAATCG                         >  1:2143180/1‑35
            GCTCAAGTTTGGCAAATTTGGCTGGGAAAAAATCG                         >  1:8944999/1‑35
             CTCAAGTTTGGCAAATTTGGCTGGGACAAAATCGC                        >  1:5780013/1‑35
             CTCAAGTTTGGCAAATTTGGCTGGGACAAAATCGC                        >  1:12247741/1‑35
             CTCAAGTTTGGCAAATTTGGCTGGGAAAAAATTGC                        >  1:12874592/1‑35
             CTCAAGTTTGGCAAATTTGGCTGGGAAAAAATCGC                        >  1:8692780/1‑35
              TCAAGTTTGGCAAATTTGGCTGGGAAAAAATCGCg                       >  1:9068143/1‑34
                                tggGGGAAAAAATCGCCTATGGTATGGGCGACGTT     <  1:982918/32‑1
                                gggGGGAAAAAATCGCCTATGGTATGGGCGACGTT     <  1:4821611/32‑1
                                 ggGGGAAAAAATCGCCTATGGTATGGGCGACGTTG    <  1:2024046/33‑1
                                  TGGGAAAAAATCGCCTATGGTATGGGCGACGTTGG   >  1:6389363/1‑35
                                  TGGGAAAAAATCGCCTATGGTATGGGCGACGTTGG   >  1:16300179/1‑35
                                   GGGAAAAAATCGCCTATGTTATGGGCGACGTTGGT  >  1:429827/1‑35
                                   GGGAAAAAATCGCCTATGGTATGGGCGACGTTGGT  >  1:7158098/1‑35
                                   GGGAAAAAATCGCCTATGGTATGGGCGACGTTGGT  <  1:2438209/35‑1
                                   GGGAAAAAATCGCCTATGGTATGGGCGACGTTGGT  >  1:20368352/1‑35
                                   GGGAAAAAATCGCCTATGGTATGGGCGACGTTGGT  <  1:2003310/35‑1
                                   GGGAAAAAATCGCCTATGGTATGGGCGACGTTGGT  >  1:16019840/1‑35
                                                                      
GGTCAAAATATTGCTCAAGTTTGGCAAATTTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3281504‑3281469
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGAAAAAATCGCCTATGGTATGGGCGACGTTGGT  <  REL606/4043982‑4043949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.