New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1332666 = | 72 (0.700) | 5 (0.060) | 4/36 | NT | 7.6% | coding (440/975 nt) | cysB | DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding |
? | REL606 | = 4432999 | 68 (0.880) | intergenic (‑97/‑213) | ppa/ytfQ | inorganic pyrophosphatase/predicted sugar transporter subunit: periplasmic‑binding component of ABC superfamily |
ATCACTAAATCTTCATACAGATGCAGCGCTTCTGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1332705‑1332666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgaAAAAGGAAAATGAAGACGAAAACAAGCGAAGACA < REL606/4432999‑4432966 ATCACTAAATCTTCATACAGATGCAGCCCTTCTGT > 1:4038513/1‑35 TCACTAAATCTTCATACAGATGCAGCGCTTCTGTG > 1:19536536/1‑35 TCACTAAATCTTCATACAGATGCAGCGCTTCTGTG < 1:6972836/35‑1 CACTAAATCTTCATACAGATGCAGCGCTTCTGTGG > 1:11296421/1‑35 CACTAAATCTTCATACAGATGCAGCGCTTCTGTGG < 1:14152148/35‑1 ACTAAATCTTCATACAGATGCAGCGCTTCTGTGGC < 1:11683919/35‑1 ACTAAATCTTCATACAGATGCAGCGCTTCTGTGGC > 1:12434124/1‑35 ACTAAATCTTCATACAGATGCAGCGCTTCTGTGGC < 1:8467317/35‑1 CTAAATCTTCATACAGATGCAGCGCTTCTGTGGCG < 1:10576553/35‑1 CTAAATCTTCATACAGATGCAGCGCTTCTGTGGCG < 1:15040973/35‑1 CTAAATCTTCATACAGATGCAGCGCTTCTGTGGCG > 1:16448193/1‑35 CTAAATCTTCATACAGATGCAGCGCTTCTGTGGCG < 1:20198915/35‑1 CTAAATCTTCATACAGATGCAGCGCTTCTGTGGCG < 1:13135104/35‑1 CTAAATCTTCATACAGATGCAGCGCTTCTGTGGCG < 1:13880826/35‑1 TAAATCTTCATACAGATGCAGCGCTTCTGTGGCGA > 1:15490790/1‑35 TAAATCTTCATACAGATGCAGCGCTTCTGTGGCGA > 1:5434526/1‑35 TAAATCTTCATACAGATGCAGCGCTTCTGTGGCGA > 1:12073488/1‑35 TAAATCTTCATACAGATGCAGCGCTTCTGTGGCGA > 1:1151521/1‑35 AAATCTTCATACAGATGCAGCGCTTCTGTGGCGAA > 1:17214944/1‑35 AAATCTTCATACAGATGCAGCGCTTCTGTGGCGAA > 1:17476967/1‑35 ATCTTCATACAGATGCAGCGCTTCTGTGGCGAAAA > 1:14715296/1‑35 ATCTTCATACAGATGCAGCGCTTCTGTGGCGAAAA > 1:6690432/1‑35 CTTCATACAGATGCAGCGCTTCTGTGGCGAAAAtg > 1:14890728/1‑33 TTCATACAGATGCAGCGCTTCTGTGGCGAAAACGG > 1:8456915/1‑35 TCATACAGATGCAGCGCTTCTGTGGCGAAAACGGA > 1:17768240/1‑35 CATACAGATGCAGCGCTTCTGTGGCGAAAACGGAA > 1:12877139/1‑35 CATACAGATGCAGCGCTTCTGTGGCGAAAAAGGAA > 1:8680838/1‑35 GATGCAGCGCTTCTGTGGCGAAAAAGGAAAAAGAA > 1:7121480/1‑35 TGGCGAAAAAGGAAAATGAAGACGAAAACAAGCGA > 1:16719874/1‑35 TGGCGAAAAAGGAAAATGAAGACGAAAACAAGCGA < 1:1534831/35‑1 TGGCGAAAAAGGAAAATGAAGACGAAAACAAGCGA > 1:1967099/1‑35 TGGCGAAAAAGGAAAATGAAGACGAAAACAAGCGA > 1:3776144/1‑35 TGGCGAAAAAGGAAAATGAAGACGAAAACAAGCGA < 1:6850604/35‑1 GGCGAAAAAGGAAAATGAAGACGAAAACAAGCGAA < 1:6264497/35‑1 GGCGAAAAAGGAAAATGAAGACGAAAACAAGCGAA < 1:6268450/35‑1 GGCGAAAAAGGAAAATGAAGACGAAAACAAGCGAA > 1:3240461/1‑35 GGCGAAAAAGGAAAATGAAGACGAAAACAAGCGAA > 1:16246215/1‑35 GGCGAAAAAGGAAAATGAAGACGAAAACAAGCGAA > 1:14906554/1‑35 GGCGAAAAAGGAAAATGAAGACGAAAACAAGCGAA > 1:10245122/1‑35 GCGAAAAAGGAAAATGAAGACGAAAACAAGCGAAt > 1:16272669/1‑34 GCGAAAAAGGAAAATGAAGACGAAAACAAGCGAAG > 1:2201208/1‑35 GCGAAAAAGGAAAATGAAGACGAAAACAAGCGAAG > 1:19952737/1‑35 GCGAAAAAGGAAAATGAAGACGAAAACAAGCGAAG > 1:16395471/1‑35 CGAAAAAGGAAAATGAAGACGAAAACAAGCTAAGA > 1:17638866/1‑35 CGAAAAAGGAAAATGAAGACGAAAACAAGCGAAGA > 1:3561084/1‑35 CGAAAAAGGAAAATGAAGACGAAAACAAGCGAAGA > 1:46003/1‑35 CGAAAAAGGAAAATGAAGACGAAAACAAGCGAAGA > 1:16864209/1‑35 GAAAAATGAAAATGAAGACGAAAACAAGCGAAGAC > 1:12422934/1‑35 GAAAAAGGAAAATGAAGACGAAAACAAGCGAAGAC < 1:8045780/35‑1 GAAAAAGGAAAATGAAGACGAAAACAAGCGAAGAC > 1:6169422/1‑35 GAAAAAGGAAAATGAAGACGAAAACAAGCGAAGAC > 1:5241325/1‑35 GAAAAAGGAAAATGAAGACGAAAACAAGCGAAGAC > 1:2894191/1‑35 GAAAAAGGAAAATGAAGACGAAAACAAGCGAAGAC > 1:18700202/1‑35 GAAAAAGGAAAATGAAGACGAAAACAAGCGAAGAC < 1:1421305/35‑1 AAAAAGGAAAATGAAGACGAAAACAAGCGAAGACA > 1:5011474/1‑35 AAAAAGGAAAATGAAGACGAAAACAAGCGAAGACA < 1:8652328/35‑1 AAAAAGGAAAATGAAGACGAAAACAAGCGAAGACA < 1:885363/35‑1 AAAAAGGAAAATGAAGACGAAAACAAGCGAAGACA > 1:9487985/1‑35 ATCACTAAATCTTCATACAGATGCAGCGCTTCTGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1332705‑1332666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgaAAAAGGAAAATGAAGACGAAAACAAGCGAAGACA < REL606/4432999‑4432966 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |