New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1095862 =53 (0.520)3 (0.050) 3/28 NT 10.4% coding (274/1509 nt) putP proline:sodium symporter
?REL606 1585457 = 21 (0.350)coding (495/666 nt) marC predicted transporter

TGGCCTGACATTAGGCGCGTGGATCAACTGGAAGCTGGTGGCGGGGCGGTTGCGTGTGCATACCGAAT  >  REL606/1095828‑1095895
                                  |                                 
tGGCCTGACATTAGGCGCGTGGATCAACTGGAAGc                                   >  1:5934951/1‑35 (MQ=255)
tGGCCTGACATTAGGCGCGTGGATCAACTGGAAGc                                   <  1:1124877/35‑1 (MQ=255)
ggtactgatggttgcgccgccgctgatctttttcc                                   <  1:14201917‑M1/1‑1 (MQ=255)
  tactgatggttgcgccgccgctgatctttttcCtg                                 <  1:12950621‑M1/3‑1 (MQ=255)
  gCCTGACATTAGGCGCGTGGATGAACTGGAAGCtg                                 <  1:20135029/35‑1 (MQ=255)
  gCCTGACATTAGGCGCGTGGATCAACTGGAAGCtg                                 <  1:5639359/35‑1 (MQ=255)
  gCCTGACATTAGGCGCGTGGATCAACTGGAAGCtg                                 <  1:5120047/35‑1 (MQ=255)
  gCCTGACATTAGGCGCGTGGATCAACTGGAAGCtg                                 >  1:20048420/1‑35 (MQ=255)
  gCCTGACATTAGGCGCGTGGATCAACTGGAAGCtg                                 <  1:8105731/35‑1 (MQ=255)
  gCCTGACATTAGGCGCGTGGATCAACTGGAAGCtg                                 <  1:3390832/35‑1 (MQ=255)
  gCCTGACATTAGGCGCGTGGATCAACTGGAAGCtg                                 >  1:3042671/1‑35 (MQ=255)
  gCCTGACATTAGGCGCGTGGATCAACTGGAAGCtg                                 >  1:6548571/1‑35 (MQ=255)
  gCCTGACATTAGGCGCGTGGATCAACTGGAAGCtg                                 <  1:9429262/35‑1 (MQ=255)
   ccTGACATTATGCGCGTGGATCAACTGGAAGCtgg                                >  1:6592603/1‑35 (MQ=255)
   ccTGACATTAGGCGCGTGGATCAACTGGAAGCtgg                                <  1:13317223/35‑1 (MQ=255)
   ccTGACATTAGGCGCGTGGATCAACTGGAAGCtgg                                >  1:3321076/1‑35 (MQ=255)
   actgatggctgcgccgccgctgatctttttcCtgg                                <  1:16332014‑M1/4‑1 (MQ=255)
    cTGACATTAGGCGCGTGGATCAACTGGAAGCtggt                               >  1:12754904/1‑35 (MQ=255)
    cTGACATTAGGCGCGTGGATCAACTGGAAGCtggt                               <  1:6595617/35‑1 (MQ=255)
    cTGACATTAGGCGCGTGGATCAACTGGAAGCtggt                               >  1:2057529/1‑35 (MQ=255)
    cTGACATTAGGCGCGTGGATCAACTGGAAGCtggt                               <  1:9147629/35‑1 (MQ=255)
     tGACATTAGGCGCGTGGATCAACTGGAAGCtggtg                              <  1:17049005/35‑1 (MQ=255)
     tGACATTAGGCGCGTGGATCAACTGGAAGCtggtg                              >  1:5909442/1‑35 (MQ=255)
     tGACATTAGGCGCGTGGATCAACTGGAAGCtggcg                              <  1:9725554/35‑3 (MQ=255)
      gACATTAGGCGCGTGGATCAACTGGAAGCtggtgg                             >  1:11545028/1‑35 (MQ=255)
      gACATTAGGCGCGTGGATCAACTGGAAGCtggtgg                             >  1:19733946/1‑35 (MQ=255)
      gACATTAGGCGCGTGGATCAACTGGAAGCtggtgg                             >  1:16714048/1‑35 (MQ=255)
       atggttgcgccgccgctgatctttttcCTGGTggc                            <  1:14666411‑M1/8‑1 (MQ=255)
       atggttgcgccgccgctgatctttttcCTGGTggc                            <  1:14051809‑M1/8‑1 (MQ=255)
       atggttgcgccgccgctgatccttttcCTGGTggc                            <  1:1235556‑M1/8‑1 (MQ=255)
       aCATTAGGCGCGTGGATCAACTGGAAGCTGGTggc                            <  1:19338574/35‑1 (MQ=255)
       aCATTAGGCGCGTGGATCAACTGGAAGCTGGTggc                            <  1:10484463/35‑1 (MQ=255)
        tggtttcgccgccgctgatctttttcCTGGTggcg                           <  1:13096617‑M1/9‑1 (MQ=255)
        tggttgcgccgccgctgatctttttcCTGGTggcg                           <  1:14405645‑M1/9‑1 (MQ=255)
        tggctgcgccgccgctgatctttttcCTGGTggcg                           <  1:20301505‑M1/9‑1 (MQ=255)
        cATTAGGCGCGTGGATCAACTGGAAGCTGGTggct                           >  1:8273844/1‑34 (MQ=255)
        cATTAGGCGCGTGGATCAACTGGAAGCTGGTggcg                           <  1:1364331/35‑1 (MQ=255)
        cATTAGGCGCGTGGATCAACTGGAAGCTGGTggcg                           >  1:5233421/1‑35 (MQ=255)
        cATTAGGCGCGTGGATCAACTGGAAGCTGGTggcg                           <  1:1571808/35‑1 (MQ=255)
         aTTAGGCGCGTGGATCAACTGGAAGCTGGTggcgg                          >  1:945740/1‑35 (MQ=255)
         aTTAGGCGCGTGGATCAACTGGAAGCTGGTggcgg                          >  1:3987080/1‑35 (MQ=255)
         aTTAGGCGCGTGGATCAACTGGAAGCTGGTggcgg                          <  1:5788819/35‑1 (MQ=255)
          ttAGGCGCGTGGATCAACTGGAAGCTGGTggcggg                         <  1:3164011/35‑1 (MQ=255)
          ttAGGCGCGTGGATCAACTGGAAGCTGGTggcggg                         >  1:15151524/1‑35 (MQ=255)
          ttAGGCGCGTGGATCAACTGGAAGCTGGTggcggg                         >  1:11924181/1‑35 (MQ=255)
          gttgcgccgccgctgatctttttcCTGGTggcggg                         <  1:10089573‑M1/11‑1 (MQ=255)
           ttgcgccgccgctgatctttttcCTGGTggcgggg                        <  1:14390364‑M1/12‑1 (MQ=255)
           tAGGCGCGTGGATCAACTGGAAGCTGGTggcgggg                        >  1:7370641/1‑35 (MQ=255)
           tAGGCGCGTGGATCAACTGGAAGCTGGTggcgggg                        >  1:13456276/1‑35 (MQ=255)
           tAGGCGCGTGGATCAACTGGAAGCTGGTggcgggg                        <  1:5438822/35‑1 (MQ=255)
            aGGCGCGTGGATCAACTGGAAGCTGGTggcggggc                       >  1:2396960/1‑35 (MQ=255)
             ggCGCGTGGATCAACTGGAAGCTGGTggcgggggg                      >  1:4156381/1‑33 (MQ=255)
             gcgccgccgctgatctttttcCTGgtggcgggggg                      <  1:303035‑M1/14‑3 (MQ=255)
             gcgccgccgctgatctttttcCTGgtggcgggggg                      <  1:4393222‑M1/14‑3 (MQ=255)
              cgccgccgctgatctttttcCTggtggcggggggt                     <  1:2207295‑M1/15‑4 (MQ=255)
              cgccgccgctgatctttttcCTggtggcggggggg                     <  1:8565600‑M1/15‑4 (MQ=255)
               gccgccgctgatctttttcCTGGTGGCGGGGGGGt                    <  1:8492430‑M1/16‑1 (MQ=255)
               cgcgTGGATCAACTGGAAGCTGGTggctgggcggg                    >  1:5518324/1‑34 (MQ=255)
               cgcgTGGATCAACTGGAAGCTGGTGGCGGGGCGGt                    <  1:20071279/35‑1 (MQ=255)
                gcgTGGATCAACTGGAAGCTGGTggcggggcgggg                   >  1:17275752/1‑33 (MQ=255)
                gcgTGGATCAACTGGAAGCTGGTGGCGGGGCGGtt                   <  1:3255367/35‑1 (MQ=255)
                ccgccgctgatctttttcCTGGTGGCGGGGGGGtt                   <  1:7920503‑M1/17‑1 (MQ=255)
                 cgccgctgatctttttcCTGGTGGCGGGGGGGTTg                  <  1:4683427‑M1/18‑1 (MQ=255)
                  gTGGATCAACTGGAAGCTGGTGGCGGGGCGGTTGc                 <  1:4802246/35‑1 (MQ=255)
                   tGGATCAACTGGAAGCTGGTGGCGGGGCGGTTGCg                <  1:757909/35‑1 (MQ=255)
                   tGGATCAACTGGAAGCTGGTGGCGGGGCGGTTGCg                <  1:12532767/35‑1 (MQ=255)
                    ggATCAACTGGAAGCTGGTGGCGGGGCGGTTGCgt               <  1:4704407/35‑1 (MQ=255)
                    ggATCAACTGGAAGCTGGTGGCGGGGCGGTTGCgt               <  1:11186943/35‑1 (MQ=255)
                    ggATCAACTGGAAGCTGGTGGCGGGGCGGTTGCgt               <  1:12495226/35‑1 (MQ=255)
                     gATCAACTGGAAGCTGGTGGCGGGGCGGTTGCgtg              <  1:4159089/35‑1 (MQ=255)
                     gATCAACTGGAAGCTGGTGGCGGGGCGGTTGCgtg              <  1:4861405/35‑1 (MQ=255)
                     gATCAACTGGAAGCTGGTGGCGGGGCGGTTGCgtg              <  1:9416607/35‑1 (MQ=255)
                     gATCAACTGGAAGCTGGTGGCGGGGCGGTTGCgtg              <  1:8456239/35‑1 (MQ=255)
                     gATCAACTAGAAGCTGGTGGCGGGGCGGTTGCgtg              <  1:13913238/35‑1 (MQ=255)
                      aTCAACTGGAAGCTGGTGGCGGGGCGGTTGCgtgt             <  1:2139565/35‑1 (MQ=255)
                      aTCAACTGGAAGCTGGTGGCGGGGCGGTTGCgtgt             <  1:6694719/35‑1 (MQ=255)
                      aTCAACTGGAAGCTGGTGGCGGGGCGGTTGCgtgt             <  1:8209786/35‑1 (MQ=255)
                       tCAACTGGAAGCTGGTGGCGGGGCGGTTGCGtgtg            <  1:7205239/35‑1 (MQ=255)
                        cAACTGGAAGCTGGTGGCGGGGCGGTTGCGTGTGc           <  1:4300261/35‑1 (MQ=255)
                         aaCTGGAAGCTGGTGGCGGGGCGGTTGCGTGTGCa          <  1:16355695/35‑1 (MQ=255)
                          aCTGGAAGCTGGTGGCGGGGCGGTTGCGTGTGCAt         <  1:17904299/35‑1 (MQ=255)
                          aCTGGAAGCTGGTGGCGGGGCGGTTGCGTGTGCAt         <  1:18422444/35‑1 (MQ=255)
                           cTGGAAGCTGGTGGCGGGGCGGTTGCGTGTGCATa        <  1:11585153/35‑1 (MQ=255)
                           cTGGAAGCTGGTGGCGGGGCGGTTGCGTGTGCATa        <  1:1960277/35‑1 (MQ=255)
                           cTGGAAGCTGGTGGCGGGGCGGTTGCGTGTGCATa        <  1:11930522/35‑1 (MQ=255)
                           cTGGAAGCTGGTGGCGGGGCGGTTGCGTGTGCATa        <  1:710627/35‑1 (MQ=255)
                            tGGAAGCTGGTGGCGGGGCGGTTGCGTGTGCATAc       <  1:1425180/35‑1 (MQ=255)
                            tGGAAGCTGGTGGCGGGGCGGTTGCGTGTGCATAc       <  1:4462790/35‑1 (MQ=255)
                            tGGAAGCTGGTGGCGGGGCGGTTGCGTGTGCATAc       <  1:1634908/35‑1 (MQ=255)
                            tGGAAGCTGGTGGCGGGGCGGTTGCGTGTGCATAc       <  1:19446920/35‑1 (MQ=255)
                             ggAAGCTGGTGGCGGGGCGGTTGCGTGTGCATAcc      <  1:16010251/35‑1 (MQ=255)
                             ggAAGCTGGTGGCGGGGCGGTTGCGTGTGCATAcc      <  1:9120203/35‑1 (MQ=255)
                             ggAAGCTGGTGGCGGGGCGGTTGCGTGTGCATAcc      <  1:11337148/35‑1 (MQ=255)
                              gAAGCTGGTGGCGGGGCGGTTGCGTGTGCATACCg     <  1:12145367/35‑1 (MQ=255)
                              gAAGCTGGTGGCGGGGCGGTTGCGTGTGCATACCg     <  1:3972529/35‑1 (MQ=255)
                              gAAGCTGGTGGCGGGGCGGTTGCGTGTGCATACCg     <  1:1078510/35‑1 (MQ=255)
                               aaGCTGGTGGCGGGGCGGTTGCGTGTGCATACCGa    <  1:9130201/35‑1 (MQ=255)
                                aGCTGGTGGCGGGGCGGTTGCGTGTGCATACCGaa   <  1:6756401/35‑1 (MQ=255)
                                 gCTGGTGGCGGGGCGGTTGCGTGTGCATACCGAAt  <  1:14517326/35‑1 (MQ=255)
                                  |                                 
TGGCCTGACATTAGGCGCGTGGATCAACTGGAAGCTGGTGGCGGGGCGGTTGCGTGTGCATACCGAAT  >  REL606/1095828‑1095895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.