New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 481061 =70 (0.680)12 (0.160) 4/34 NT 13.9% coding (2487/2505 nt) copA copper transporter
?REL606 = 606452 99 (1.360)coding (767/957 nt) fepB iron‑enterobactin transporter subunit

Only 100 of 200 total aligned reads displayed.

ACCGGCGAACAGGAATAGCGATTCACCGTTTAACCCCGCAGCCAGATTTTCCCCACCAAGCTGAATGAT  >  REL606/606418‑606486
                                  |                                  
  cGGCGAACAGGAATAGCGATTCACCGTTTAACCcc                                  >  1:439003‑M2/1‑33 (MQ=255)
   ggCGAACAGGAATAGCGATTCACCGTTTAACCccg                                 <  1:2928250‑M2/35‑4 (MQ=255)
   ggCGAACAGGAATAGCGATTCACCGTTTAACCccg                                 >  1:6537336‑M2/1‑32 (MQ=255)
    gCGAACAGGAATAGCGATTCACCGTTTAACCccgc                                <  1:13886599‑M2/35‑5 (MQ=255)
    gCGAACAGGAATAGCGATTCACCGTTTAACCccgc                                <  1:6950703‑M2/35‑5 (MQ=255)
    gCGAACAGGAATAGCGATTCACCGTTTAACCccgc                                >  1:11195143‑M2/1‑31 (MQ=255)
     cGAACAGGAATAGCGATTCACCGTTTAACCccgca                               <  1:150528‑M2/35‑6 (MQ=255)
     cGAACAGGAATAGCGATTCACCGTTTAACCccgca                               <  1:17474278‑M2/35‑6 (MQ=255)
     cGAACAGGAATAGCGATTCACCGTTTAACCccgca                               >  1:1768374‑M2/1‑30 (MQ=255)
     cGAACAGGAATAGCGATTCACCGTTTAACCccgca                               >  1:10652768‑M2/1‑30 (MQ=255)
     cGAACAGGAATAGCGATTCACCGTTTAACCccgca                               >  1:10042606‑M2/1‑30 (MQ=255)
      gAACAGGAATAGCGATTCACCGTTTAACCccgcag                              <  1:16922913‑M2/35‑7 (MQ=255)
      gAACAGGAATAGCGATTCACCGTTTAACCccgcag                              <  1:8313476‑M2/35‑7 (MQ=255)
       aaCAGGAATAGCGATTCACCGTTTAACCccgcagc                             >  1:10548571‑M2/1‑28 (MQ=255)
        aCAGGAATAGCGATTCACCGTTTAACCccgcagtc                            <  1:17781161‑M2/35‑9 (MQ=255)
        aCAGGAATAGCGATTCACCGTTTAACCCCGCAGcc                            <  1:10658366/35‑1 (MQ=255)
        aCAGGAATAGCGATTCACCGTTTAACCCCGCAGcc                            >  1:12640437/1‑35 (MQ=255)
        aCAGGAATAGCGATTCACCGTTTAACCCCGCAGcc                            <  1:13363434/35‑1 (MQ=255)
        aCAGGAATAGCGATTCACCGTTTAACCCCGCAGcc                            >  1:2376821/1‑35 (MQ=255)
         catgAATAGCGATTCACCGTTTAACCCCGCAGCCa                           >  1:10086582/4‑35 (MQ=255)
         cAGGAATAGCGATTCACCGTTTAACCCCGCAGCCa                           >  1:16679874/1‑35 (MQ=255)
         cAGGAATAGCGATTCACCGTTTAACCCCGCAGCCa                           >  1:10159900/1‑35 (MQ=255)
         cAGGAATAGCGATTCACCGTTTAACCCCGCAGCCa                           <  1:18114498/35‑1 (MQ=255)
         cAGGAATAGCGATTCACCGTTTAAACCCGCAGACa                           <  1:14970579/35‑1 (MQ=38)
          aGGAATAGCGATTCACCGTTTAACCCCGCAGCCAg                          <  1:18665483/35‑1 (MQ=255)
          aGGAATAGCGATTCACCGTTTAACCCCGCAGCCAg                          <  1:15173785/35‑1 (MQ=255)
          aGGAATAGCGATTCACCGTTTAACCCCGCAGCCAg                          <  1:776300/35‑1 (MQ=255)
          aGGAATAGCGATTCACCGTTTAACCCCGCAGCCAg                          <  1:15634978/35‑1 (MQ=255)
           ggAATAGCGATTCACCGTTTAACCCCGCAGCCata                         >  1:13139065/1‑33 (MQ=255)
           ggAATAGCGATTCACCGTTTAACCCCGCAGCCAGa                         >  1:12429607/1‑35 (MQ=255)
            gAATAGCGATTCACCGTTTAACCCCGCAGCCAGAt                        >  1:18434032/1‑35 (MQ=255)
             aaTAGCGATTCACCGTTTAACCCCGCAGCCAGAtt                       >  1:12967892/1‑35 (MQ=255)
              aTAGCGATTCACCGTTTAACCCCTCAGCCAGAttt                      >  1:6249573/1‑35 (MQ=255)
               tAGCGATTCACCGTTTAACCCCGCAGCCAGAtttt                     <  1:6064072/35‑1 (MQ=255)
               tAGCGATTCACCGTTTAACCCCGCAGCCAGAtttt                     >  1:12329087/1‑35 (MQ=255)
               tAGCGATTCACCGTTTAACCCCGCAGCCAGAtttt                     <  1:11872830/35‑1 (MQ=255)
                aGCGATTCGCCGTTTAACCCCGCAGCCAGATTTTc                    >  1:7289474/1‑35 (MQ=255)
                aGCGATTCACCGTTTAACCCCGCAGCCAGATTTTc                    <  1:5047739/35‑1 (MQ=255)
                  cGATTCACCGTTTAACCCCGCAGCCAGATTTTccc                  >  1:17916768/1‑35 (MQ=255)
                  cGATTCACCGTTTAACCCCGCAGCCAGATTTTccc                  >  1:877726/1‑35 (MQ=255)
                  cGATTCACCGTTTAACCCCGCAGCCAGATTTTccc                  >  1:16203886/1‑35 (MQ=255)
                  cGATTCACCGTTTAACCCCGCAGCCAGATTTTccc                  <  1:14062221/35‑1 (MQ=255)
                   gATTCACCGTTTAACCCCGCAGCCAGNTTTTcccc                 <  1:12726888/35‑1 (MQ=255)
                   gATTCACCGTTTAACCCCGCAGCCAGATTTTcccc                 >  1:19886431/1‑35 (MQ=255)
                   gATGCACCGTTTAACCCCGCAGCCAGATTTTcccc                 <  1:2611929/35‑1 (MQ=255)
                    aTTCACCGTTTAACCCCGCAGCCAGATTTTCCcca                <  1:6407090/35‑1 (MQ=255)
                    aTTCACCGTTTAACCCCGCAGCCAGATTTTCCcca                <  1:16581951/35‑1 (MQ=255)
                    aTTCACCGTTTAACCCCGCAGCCAGATTTTCCcca                <  1:646686/35‑1 (MQ=255)
                     ttCACCGTTTAACCCCGCAGCCAGATTTTCCccac               <  1:6220738/35‑1 (MQ=255)
                     ttCACCGTTTAACCCCGCAGCCAGATTTTCCccac               >  1:11568505/1‑35 (MQ=255)
                     ttCACCGTTTAACCCCGCAGCCAGATTTTCCccac               >  1:11028165/1‑35 (MQ=255)
                      tCACCGTTTAACCCCGCAGCCAGATTTTCCccacc              >  1:13994336/1‑35 (MQ=255)
                      tCACCGTTTAACCCCGCAGCCAGATTTTCCccacc              >  1:6472126/1‑35 (MQ=255)
                      tCACCGTTTAACCCCGCAGCCAGATTTTCCccacc              <  1:5697841/35‑1 (MQ=255)
                      tCACCGTTTAACCCCGCAGCCAGATTTTCCccaca              <  1:13242220/35‑2 (MQ=255)
                       ccccGTTTAACCCCGCAGCCAGATTTTCCccacca             <  1:4593668/33‑1 (MQ=255)
                        cccGTTTAACCACGCAGCCAGATTTTCCCCACCaa            <  1:113248/34‑1 (MQ=255)
                        aCCGTTTAACCCCGCAGCCAGATTTTCCCCACCaa            <  1:19971881/35‑1 (MQ=255)
                        aCCGTTTAACCCCGCAGCCAGATTTTCCCCACCaa            <  1:14841560/35‑1 (MQ=255)
                        aCCGTTTAACCCCGCAGCCAGATTTTCCCCACCaa            <  1:12829274/35‑1 (MQ=255)
                        aCCGTTTAACCCCGCAGCCAGATTTTCCCCACCaa            <  1:3467576/35‑1 (MQ=255)
                         ccGTTTAACCCCGCAGCCAGATTTTCCCCACCAAg           <  1:12031627/35‑1 (MQ=255)
                         ccGTTTAACCCCGCAGCCAGATTTTCCCCACCAAg           >  1:15749128/1‑35 (MQ=255)
                          cGTTTAACCccgcagcaaccggttggcgttactca          >  1:3637635‑M2/1‑9 (MQ=255)
                          cGTTTAACCCCGCAGCCAGATTTTCCCCACCAAGc          >  1:6732929/1‑35 (MQ=255)
                          cGTTTAACCCCGCAGCCAGATTTTCCCCACCAAGc          <  1:8868454/35‑1 (MQ=255)
                           gTTTAACCccgcagcaaccggttggcgttactcac         >  1:10324344‑M2/1‑8 (MQ=255)
                           gTTTAACCCCGCAGCCAGATTTTCCCCACCAAGCt         <  1:952072/35‑1 (MQ=255)
                           gTTTAACCCCGCAGCCAGATTTTCCCCACCAAGCt         <  1:4000603/35‑1 (MQ=255)
                           gTTTAACCCCGCAGCCAGATTTTCCCCACCAAGCt         <  1:13453905/35‑1 (MQ=255)
                            tttAACCccgcagcaaccggttggcgttactcact        >  1:14190448‑M2/1‑7 (MQ=255)
                            tttAACCccgcagcaaccggttggcgttactcact        >  1:5860934‑M2/1‑7 (MQ=255)
                            tttAACCCCGCAGCCAGATTTTCCCCACCAAGCTg        <  1:18768371/35‑1 (MQ=255)
                            tttAACCCCGCAGCCAGATTTTCCCCACCAAGCTg        <  1:19035124/35‑1 (MQ=255)
                            ttaAACCccgcagcaaccggttggcgttactcact        >  1:16887233‑M2/1‑7 (MQ=255)
                            gttaAACccgcagcaaccggttggcgttactcact        >  1:8164462‑M2/2‑7 (MQ=255)
                             ttAACCCCGCAGCCAGATTTTCCCCACCAAGCTGa       <  1:14405473/35‑1 (MQ=255)
                             ttAACCCCGCAGCCAGATTTTCCCCACCAAGCTGa       >  1:3873551/1‑35 (MQ=255)
                             ttAAACccgcagcaaccggttggcgttactcacta       >  1:1360440‑M2/1‑6 (MQ=255)
                              tacccccGCAGCCAGATTTTCCCCACCAAGCTGaa      <  1:109178/32‑1 (MQ=255)
                              tAACCCCGCAGCCAGATTTTCCCCACCAAGCTGaa      >  1:14909679/1‑35 (MQ=255)
                              tAACCCCGCAGCCAGATTTTCCCCACCAAGCTGaa      <  1:20401158/35‑1 (MQ=255)
                              tAACCCCGCAGCCAGATTTTCCCCACCAAGCTGaa      <  1:5099308/35‑1 (MQ=255)
                              tAACCCCGCAGCCAGATTTTCCCCACCAAGCTGaa      <  1:7674670/35‑1 (MQ=255)
                              tAACCCCGCAGCCAGATTTTCCCCACCAAGCTGaa      <  1:6939335/35‑1 (MQ=255)
                              tAAACccgcagcaaccggttggcgttactcactac      >  1:3958296‑M2/1‑5 (MQ=255)
                              tAAACccgcagcaaccggttggcgttactcactac      >  1:4258879‑M2/1‑5 (MQ=255)
                               aaACccgcagcaaccggttggcgttactcactacg     >  1:8507465‑M2/1‑4 (MQ=255)
                               aaACccgcagcaaccggttggcgttactcactacg     >  1:5323323‑M2/1‑4 (MQ=255)
                                aCCCCGCAGCCAGATTTTCCCCACCGAGCTGAatg    >  1:18243076/1‑35 (MQ=255)
                                aCCCCGCAGCCAGATTTTCCCCACCAAGCTGAatt    >  1:8025559/1‑34 (MQ=255)
                                aCCCCGCAGCCAGATTTTCCCCACCAAGCTGAatg    <  1:3532823/35‑1 (MQ=255)
                                aCCCCGCAGCCAGATTTTCCCCACCAAGCTGAatg    >  1:13337256/1‑35 (MQ=255)
                                aCCCCGCAGCCAGATTTTCCCCACCAAGCTGAatg    >  1:1925679/1‑35 (MQ=255)
                                 ccccgcagcaaccggttggcgttactcactacggt   >  1:2802724‑M2/1‑2 (MQ=255)
                                 ccccGCAGCCAGATTTTCCCCACCAAGCTGAatga   <  1:1040046/35‑1 (MQ=255)
                                 ccccGCAGCCAGATTTTCCCCACCAAGCTGAatga   >  1:19086640/1‑35 (MQ=255)
                                  cccgcagcaaccggttggcgttactcactacggta  >  1:12790336‑M2/1‑1 (MQ=255)
                                  cccGCAGCCAGATTTTCCCCACCAAGCTGAatgat  <  1:13679506/35‑1 (MQ=255)
                                  cccGCAGCCAGATTTTCCCCACCAAGCTGAatgat  >  1:16323163/1‑35 (MQ=255)
                                  |                                  
ACCGGCGAACAGGAATAGCGATTCACCGTTTAACCCCGCAGCCAGATTTTCCCCACCAAGCTGAATGAT  >  REL606/606418‑606486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.