New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1076727 = | 60 (0.580) | 8 (0.090) | 5/40 | NT | 14.4% | coding (1182/2547 nt) | torA | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
? | REL606 | 3786648 = | 45 (0.530) | coding (75/339 nt) | ECB_03525 | conserved hypothetical protein |
AACCAAAACCACCACCTGGCAGGCCAATTTGCCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1076764‑1076727 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcCTGGCCGCCAACTGTGATAACGGCATGTTTGAGC > REL606/3786648‑3786681 acCCAAAACCACCACCTGGCAGGCCAATTTGCCCC < 1:16963798/33‑1 AACCAAAACCACCACCTGGCAGGCCAATTTGCCCC > 1:14145970/1‑35 ACCAAACCCACCACCTGGCAGGCCAATTTGCCCCA < 1:8403974/35‑1 ACCAAAACCACCACCTGGCAGGCCAATTTGCCCCA > 1:350076/1‑35 ACCAAAACCACCACCTGGCAGGCCAATTTGCCCCA > 1:11915771/1‑35 ACCAAAACCACCACCTGGCAGGCCAATTTGCCCCA < 1:17054633/35‑1 CCAAAACCACCACCTGGCAGGCCAATTTGCCCCAG > 1:19299331/1‑35 CCAAAACCACCACCTGGCAGGCCAATTTGCCCCAG < 1:15772686/35‑1 CAAACCCACCACCTGGCAGGCCAATTTGCCCCAGC < 1:7384009/35‑1 CAAACCCACCACCTGGCAGGCCAATTTGCCCCAGC < 1:6972888/35‑1 CAAACCCACCACCTGGCAGGCCAATTTGCCCCAGC < 1:10086977/35‑1 CAAAACCACCACCTGGCAGGCCAATTTGCCCCAGC > 1:6678937/1‑35 CCAATTTGCCCCAGCCTGGCCGCCAACTGTGATAA < 1:1599937/35‑1 AATTTCCCCCAGCCTGGCCGCCAACTGTGATAACG < 1:9927840/35‑1 AATATGCCCCAGCCTGGCCGCCAACTGTGATAACG < 1:10905499/35‑1 AATATGCCCCAGCCTGGCCGCCAACTGTGATAACG < 1:9249030/35‑1 ATTTGGCCCAGCCTGGCCGCCAACTGTGATAACGG < 1:203262/35‑1 ATTTCCCCCAGCCTGGCCGCCAACTGTGATAACGG < 1:11372977/35‑1 TTTCCCCCAGCCTGGCCGCCAACTGTGATAACGGC < 1:194887/35‑1 aTGCCCCAGCCTGGCCGCCAACTGTGATAACGGCA < 1:1310456/34‑1 TTGCCCCAGCCTGGCCGCCAACTGTGATAACGGCA < 1:6536941/35‑1 ttgCCCAGCCTGGCCGCCAACTGTGATAACGGCAT < 1:15175033/32‑1 TGCCCCAGCCTGGCCGCCAACTGTGATAACGGCAT < 1:2798884/35‑1 CCCCAGCCTGGCCGCCAACTGTGATAACGGCATGT < 1:15279511/35‑1 CCCAGCCTGGCCGCCAACTGTGATAACGGCATGTT < 1:894581/35‑1 CCCAGCCTGGCCGCCAACTGTGATAACGGCATGTT < 1:11612674/35‑1 CCAGCCTGGCCGCCAACTGTGATAACGGCATGTTT < 1:13965963/35‑1 CCAGCCTGGCCGCCAACTGTGATAACGGCATGTTT < 1:15097603/35‑1 CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG > 1:13297404/1‑35 CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG > 1:13362535/1‑35 CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG > 1:19478588/1‑35 CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG > 1:16835668/1‑35 CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG > 1:19495353/1‑35 CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG > 1:378190/1‑35 CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG < 1:5958240/35‑1 AGCCTGGCCGCCAACTGTGATAACGGCATGTTTGA < 1:8507605/35‑1 AGCCTGGCCGCCAACTGTGATAACGGCATGTTTGA < 1:5172150/35‑1 AGCCTGGCCGCCAACTGTGATAACGGCATGTTTGA < 1:2756243/35‑1 AGCCTGGCCGCCAACTGTGATAACGGCATGTTTGA > 1:2206674/1‑35 AGCCTGGCCGCCAACTGTGATAACGGCATGTTTGA > 1:19010127/1‑35 AGCCTGGCCGCCAACTGTGATAACGGCATGTTTGA > 1:17369187/1‑35 GCCTGGCCGCCAACTGTGATAACGGCATGTTTGAG > 1:3367634/1‑35 GCCTGGCCGCCAACTGTGATAACGGCATGTTTGAG > 1:6894233/1‑35 GCCTGGCCGCCAACTGTGATAACGGCATGTTTGAG < 1:15678713/35‑1 GCCTGGCCGCCAACTGTGATAACGGCATGTTTGAG < 1:14457345/35‑1 CCTGGCCGCCAACTGTGATAACGGCATGTTTGAGC < 1:5147051/35‑1 CCTGGCCGCCAACTGTGATAACGGCATGTTTGAGC > 1:18295397/1‑35 AACCAAAACCACCACCTGGCAGGCCAATTTGCCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1076764‑1076727 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcCTGGCCGCCAACTGTGATAACGGCATGTTTGAGC > REL606/3786648‑3786681 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |