New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 471760 =64 (0.620)13 (0.140) 5/42 NT 15.0% coding (281/960 nt) aes acetyl esterase
?REL606 3912266 = 91 (1.010)intergenic (+46/‑94) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

Only 100 of 136 total aligned reads displayed.

GCGATCGTGGGTATCGAGATTGCCGAGAATAAAACCGCCTCCATGCAAATAAAATAGCGTCGCCGGGCT  >  REL606/471726‑471794
                                  |                                  
gCGATCGTGGGTATCGAGATTGCCGAGAATAAAAc                                    >  1:8912409/1‑35 (MQ=255)
 ctaTCGTGGGTATCGAGATTGCCGAGAATAAAAcc                                   <  1:15534548/33‑1 (MQ=255)
 cGATCGTGGGTATCGAGATTGCCGAGAATAAAAcc                                   <  1:4306152/35‑1 (MQ=255)
 cGATCGTGGGTATCGAGATTGCCGAGAATAAAAcc                                   >  1:8665231/1‑35 (MQ=255)
  gATCGTGGGTATCGAGATTGCCGAGAATAAAACCg                                  >  1:13412588/1‑35 (MQ=255)
  gATCGTGGGTATCGAGATTGCCGAGAATAAAACCg                                  >  1:16509777/1‑35 (MQ=255)
  gATCGTGGGTATCGAGATTGCCGAGAATAAAACCg                                  >  1:7921995/1‑35 (MQ=255)
   aTCGTGGGTATCGAGATTGCCGAGAATAAAACCGc                                 >  1:5484833/1‑35 (MQ=255)
   aTCGTGGGTATCGAGATTGCCGAGAATAAAACCGc                                 >  1:13073408/1‑35 (MQ=255)
    tCGTTGGTATCGAGATTGCCGAGAATAAAACCGcc                                >  1:16011673/1‑35 (MQ=255)
    tCGTGGGTATCGAGATTGCCGAGAATAAAACCGcc                                >  1:8958492/1‑35 (MQ=255)
     cGTGGGTATCGAGATTGCCGAGAATAAAACCGCCt                               >  1:11843200/1‑35 (MQ=255)
     cGTGGGTATCGAGATTGCCGAGAATAAAACCGCCt                               >  1:16269068/1‑35 (MQ=255)
     cGTGGGTATCGAGATTGCCGAGAATAAAACCGCCt                               >  1:14004294/1‑35 (MQ=255)
     cGTGGGTATCGAGATTGCCGAGAATAAAACCGCCt                               >  1:10158395/1‑35 (MQ=255)
      gTGGGTATCGAGATTGCCGAGAATAAAACCGCCTc                              >  1:16900160/1‑35 (MQ=255)
      gTGGGTATCGAGATTGCCGAGAATAAAACCGCCTc                              >  1:16645217/1‑35 (MQ=255)
      gTGGGTATCGAGATTGCCGAGAATAAAACCGCCTc                              >  1:16947650/1‑35 (MQ=255)
      gTGGGTATCGAGATTGCCGAGAATAAAACCGCCTc                              >  1:10744966/1‑35 (MQ=255)
       tGGGTATCGAGATTGCCGAGAATAAAACCGCCTcc                             >  1:2678592/1‑35 (MQ=255)
       tGGGTATCGAGATTGCCGAGAATAAAACCGCCTcc                             >  1:2476354/1‑35 (MQ=255)
        gggTATCGAGATTGCCGAGAATAAAACCGCCTCCa                            >  1:15048584/1‑35 (MQ=255)
         ggTATCGAGATTGCCGAGAATAAAACCGCCTCCAt                           >  1:18365971/1‑35 (MQ=255)
         ggTATCGAGATTGCCGAGAATAAAACCGCCTCCAt                           >  1:4570771/1‑35 (MQ=255)
         ggTATCGAGATTGCCGAGAATAAAACCGCCTCCAt                           >  1:18756084/1‑35 (MQ=255)
          gTATCGAGATTGCCGAGAATAAAACGGCCTCCATg                          >  1:5217269/1‑35 (MQ=255)
          gTATCGAGATTGCCGAGAATAAAACCGCCTCCATg                          >  1:16254042/1‑35 (MQ=255)
           tATCGAGATTGCCGAGAATAAAACCGCCTCCATGc                         >  1:16020897/1‑35 (MQ=255)
            aTCGAGATTGCCGAGAATAAAACCGCCTCCATGCa                        >  1:4028542/1‑35 (MQ=255)
            aTCGAGATTGCCGAGAATAAAACCGCCTCCATGCa                        >  1:19266979/1‑35 (MQ=255)
              cGAGATTGCCGAGAATAAAACCGCCTCCATGCaaa                      >  1:11857445/1‑35 (MQ=255)
               gagaTTGCCGAGAATAAAACCGCCTCCATGCaaat                     >  1:15444295/1‑35 (MQ=255)
               gagaTTGCCGAGAATAAAACCGCCTCCATGCaaat                     >  1:14948983/1‑35 (MQ=255)
               gagaTTGCCGAGAATAAAACCGCCTCCATGCaaat                     >  1:16611645/1‑35 (MQ=255)
                agaTTGCCGAGAATAAAACCGCCTCCATGCaaata                    >  1:15825982/1‑35 (MQ=255)
                agaTTGCCGAGAATAAAACCGCCTCCATGCaaata                    >  1:1857870/1‑35 (MQ=255)
                 gaTTGCCGAGAATAAAACCGCCTCCATGCaaataa                   >  1:14785964/1‑35 (MQ=255)
                 gaTTGCCGAGAATAAAACCGCCTCCATGCaaataa                   >  1:17237858/1‑35 (MQ=255)
                 gaTTGCCGAGAATAAAACCGCCTCCATGCaaataa                   >  1:10485893/1‑35 (MQ=255)
                  aTTGCCGAGAATAAAACCGCCTCCATGCaaataaa                  >  1:19742406/1‑35 (MQ=255)
                  aTTGCCGAGAATAAAACCGCCTCCATGCaaataaa                  >  1:6938354/1‑35 (MQ=255)
                  aTTGCCGAGAATAAAACCGCCTCCATGCaaataaa                  >  1:14556347/1‑35 (MQ=255)
                   ttGCCGAGAATAAAACCGCCTCCATGCaaataaaa                 >  1:7680733/1‑35 (MQ=255)
                   ttGCCGAGAATAAAACCGCCTCCATGCaaataaaa                 >  1:3772235/1‑35 (MQ=255)
                    tGCCGAGAATAAAACCGCCTCCATGCaaataaaat                >  1:11133624/1‑35 (MQ=255)
                    tGCCGACAATAAAACCGCCTCCATGCaaataaaat                >  1:16230240/1‑35 (MQ=255)
                     gCCGAGAATAAAACCGCCTCCATGCacataaaata               >  1:20438226/1‑35 (MQ=255)
                     ccaaaacaaacccCCGCCTCCATGCaaataaaata               >  1:16976257‑M1/14‑35 (MQ=255)
                      ccGAGAATAAAACCGCCTCCATGCAAATAAAATAg              >  1:2650334/1‑35 (MQ=255)
                      ccGAGAATAAAACCGCCTCCATGCAAATAAAATAg              >  1:17687952/1‑35 (MQ=255)
                      ccGAGAATAAAACCGCCTCCATGCAAATAAAATAg              >  1:11219868/1‑35 (MQ=255)
                      ccGAGAATAAAACCGCCTCCATGCAAATAAAATAg              >  1:19969202/1‑35 (MQ=255)
                      caaaaaaaacccCCGCCTCCATGCAAATAAAATAg              >  1:2375831‑M1/13‑35 (MQ=255)
                       caaaaaaccccCCGCCTCCATGCAAATAAAATAGc             >  1:12690822‑M1/12‑35 (MQ=255)
                       aaaaaacacccCCGCCTCCATGCAAATAAAATAGc             >  1:4783166‑M1/12‑35 (MQ=255)
                       aaaaaaaacccCCGCCTCCATGCAAATAAAATAGc             >  1:5547638‑M1/12‑35 (MQ=255)
                        aaaaacacccCCGCCTCCATGCAAATAAAATAGCg            >  1:13712156‑M1/11‑35 (MQ=255)
                         agaATAAAACCGCCTCCATGCAAATAAAATAGcag           >  1:7392183/1‑33 (MQ=255)
                         agaATAAAACCGCCTCCATGCAAATAAAATAGCGt           >  1:19180439/1‑35 (MQ=255)
                          gaATAAAACCGCCTCCATGCAAATAAAATAGCGTc          >  1:18130547/1‑35 (MQ=255)
                           cacacccCCGCCTCCATGCAAATAAAATAGCGTCg         >  1:17353970‑M1/8‑35 (MQ=255)
                           accacccCCGCCTCCATGCAAATAAAATAGCGTCg         >  1:17626877‑M1/8‑35 (MQ=255)
                           aacacccCCGCCTCCATGCAAATAAAATAGCGTCg         >  1:10630245‑M1/8‑35 (MQ=255)
                           aacacccCCGCCTCCATGCAAATAAAATAGCGTCg         >  1:4725881‑M1/8‑35 (MQ=255)
                           aaaacccCCGCCTCCATGCAAATAAAATAGCGTCg         >  1:869692‑M1/8‑35 (MQ=255)
                           aaaaaacCCACCTCCATGCAAATAAAATAGCGTCg         <  1:19916985/32‑1 (MQ=25)
                           aaTAAAACCGCCTCCATGCAAATAAAATAGCGTCg         >  1:16848050/1‑35 (MQ=255)
                           aaTAAAACCGCCTCCATGCAAATAAAATAGCGTCg         >  1:5389121/1‑35 (MQ=255)
                            ccccccCCGCCTCCATGCAAATAAAATAGCGTCGc        >  1:12050657‑M1/7‑35 (MQ=255)
                            acccccCCGCCTCCATGCAAATAAAATAGCGTCGc        >  1:1701827‑M1/7‑35 (MQ=255)
                            acacccCCGCCTCCATGCAAATAAAATAGCGTCGc        >  1:7510359‑M1/7‑35 (MQ=255)
                             tAAAACCGCCTCCATGCAAATAAAATAGCGTCGcc       >  1:820134/1‑35 (MQ=255)
                             cccccCCGCCTCCATGCAAATAAAATAGCGTCGcc       >  1:8497307‑M1/6‑35 (MQ=255)
                             cccccCCGCCTCCATGCAAATAAAATAGCGTCGcc       >  1:2849161‑M1/6‑35 (MQ=255)
                             cacccCCGCCTCCATGCAAATAAAATAGCGTCGcc       >  1:7150790‑M1/6‑35 (MQ=255)
                             accccCCGCCTCCATGCAAATAAAATAGCGTCGcc       >  1:1296295‑M1/6‑35 (MQ=255)
                              ccccCCGCCTCCATGCAAATAAAATAGCGTCGCCg      >  1:15767842‑M1/5‑35 (MQ=255)
                              ccccCCGCCTCAATGCAAATAAAATAGCGTCGCCg      >  1:20558347‑M1/5‑35 (MQ=255)
                              ccccCCGCCTCAATGCAAATAAAATAGCGTCGCCg      >  1:18243084‑M1/5‑35 (MQ=255)
                              ccccCCGCCTCAATGCAAATAAAATAGCGTCGCCg      >  1:17411356‑M1/5‑35 (MQ=255)
                               cccCCGCCTCCATGCAAATAAAATAGCGTCGCCgg     >  1:5356382‑M1/4‑35 (MQ=255)
                               cccCCGCCTCCATGCAAATAAAATAGCGTCGCCgg     >  1:3339176‑M1/4‑35 (MQ=255)
                               cccCCGCCTCCATGCAAATAAAATAGCGTCGCCgg     >  1:8906060‑M1/4‑35 (MQ=255)
                               cccCCGCCTCCATGCAAATAAAATAGCGTCGCCgg     >  1:11420354‑M1/4‑35 (MQ=255)
                               aaaCCGCCTCCATGCAAATAAAATAGCGTCGccag     >  1:9238927/1‑33 (MQ=255)
                               aaaCCGCCTCCATGCAAATAAAATAGCGTCGCCgg     >  1:8329398/1‑35 (MQ=255)
                               aaaCCGCCTCCATGCAAATAAAATAGCGTCGCCgg     >  1:698175/1‑35 (MQ=255)
                               aaaCCGCCTCCATGCAAATAAAATAGCGTCGCCgg     >  1:7082949/1‑35 (MQ=255)
                               aaaCCGCCTCCATGCAAATAAAATAGCGTCGCCgc     >  1:7777278/1‑34 (MQ=255)
                                ccCCGCCTCCATGCAAATAAAATAGCGTCGCCggg    >  1:931771‑M1/3‑35 (MQ=255)
                                ccCCGCCTCCATGCAAATAAAATAGCGTCGCCggg    >  1:1820570‑M1/3‑35 (MQ=255)
                                aaCCGCCTCCATGCAAATAAAATAGCGTCGCCggg    >  1:362552/1‑35 (MQ=255)
                                aaCCGCCTCCATGCAAATAAAATAGCGTCGCCggg    >  1:17276761/1‑35 (MQ=255)
                                aaCCGCCTCCATGCAAATAAAATAGCGTCGCCggg    >  1:14191594/1‑35 (MQ=255)
                                aaCCGCCTCCATGCAAATAAAATAGCGTCGCCggg    >  1:10088633/1‑35 (MQ=255)
                                 cCCGCCTCCATGCAAATAAAATAGCGTCGCCGGGc   >  1:12429985‑M1/2‑35 (MQ=255)
                                 aCCGCCTCCATGCAAATAAAATAGCGTCGCCGGGc   >  1:1006753/1‑35 (MQ=255)
                                  CCGCCTCCATGCAAATAAAATAGCGTCGCCGGGCt  <  1:5867762‑M1/35‑1 (MQ=255)
                                  CCGCCTCCATGCAAATAAAATAGCGTCGCCGGGCt  <  1:17540802‑M1/35‑1 (MQ=255)
                                  CCGCCTCCATGCAAATAAAATAGCGTCGCCGGGCt  <  1:13099057‑M1/35‑1 (MQ=255)
                                  |                                  
GCGATCGTGGGTATCGAGATTGCCGAGAATAAAACCGCCTCCATGCAAATAAAATAGCGTCGCCGGGCT  >  REL606/471726‑471794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.