New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 64299484 (0.820)9 (0.110) 4/38 NT 12.4% intergenic (‑195/+14) lipA/ybeF lipoyl synthase/predicted DNA‑binding transcriptional regulator
?REL606 967183 = 61 (0.750)coding (423/591 nt) ycaK hypothetical protein

GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/642956‑642994
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgGGAAAAAAATATAAGCGATTATTTAAAAAATAT  >  REL606/967183‑967215
                                                                        
GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG                                       >  1:17760742/1‑35
GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG                                       >  1:19004929/1‑35
GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG                                       <  1:14475931/35‑1
GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG                                       >  1:1274135/1‑35
GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG                                       <  1:12238570/35‑1
GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG                                       <  1:7970186/35‑1
GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG                                       >  1:10248986/1‑35
 ATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGG                                      <  1:7924533/35‑1
 ATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGG                                      <  1:7557319/35‑1
 ATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGG                                      <  1:5996633/35‑1
 ATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGG                                      >  1:15737285/1‑35
 ATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGG                                      <  1:18818091/35‑1
 ATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGG                                      >  1:18787805/1‑35
  TTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGC                                     <  1:698035/35‑1
  TTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGC                                     <  1:536213/35‑1
  TTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGC                                     <  1:5344027/35‑1
  TTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGC                                     >  1:4972237/1‑35
  TTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGC                                     >  1:9753087/1‑35
  TTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGC                                     <  1:14263436/35‑1
   TGTGCCATTTTATCGTTCTGCGCTGTGATCTGGCT                                    <  1:6335504/35‑1
   TGTGCCATTTTATCGTTCTGCGCTGTGATCTGGCT                                    <  1:9173835/35‑1
   TGTGCCATTTTATCGTTCTGCGCTGTGATCTGGCT                                    >  1:530191/1‑35
   TGTGCAATTTTATCGTTCTGCGCTGTGATCTGGCT                                    <  1:5301481/35‑1
    GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG                                   <  1:15156957/35‑1
    GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG                                   >  1:12248690/1‑35
    GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG                                   >  1:15455843/1‑35
    GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG                                   <  1:19367317/35‑1
    GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG                                   >  1:19958181/1‑35
    GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG                                   <  1:10875118/35‑1
    GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG                                   <  1:3762887/35‑1
    GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG                                   >  1:8157158/1‑35
     TGCCATTTTATCGTTCTGCGCTGTGATCTGGCTGG                                  >  1:17960374/1‑35
      GCCATTTTATCGTTCTGCGCTGTGATCTGGCTGGG                                 >  1:17373698/1‑35
       CCATTTTATCGTTCTGCGCTGTGATCTGGCTGGGA                                >  1:16894857/1‑35
        CATTTTATCGTTCTGCGCTGTGATCTGGCTGGaac                               >  1:14190145/1‑32
           TTTATCGTTCTGCGCTGTGATCTGGCTGGGAAAAA                            >  1:4799175/1‑35
            TTATCGTTCTGCGCTGTGATCTGGCTGGTAAAAAA                           >  1:20525288/1‑35
            TTATCGTTCTGCGCTGTGATCTGGCTGGGAAAAAA                           >  1:703448/1‑35
            TTATCGTTCTGCGCTGTGATCTGGCTGGGAAAAAA                           >  1:17219780/1‑35
             TATCGTTCTGCGCTGTGATCTGGCTGGGGAAAAAA                          >  1:20147231/1‑35
             TATCGTTCTGCGCTGTGATCTGGCTGGGAAAAtac                          >  1:3881840/1‑32
              ATCGTTCTGCGCTGTGATCTGGCTGGGAAAAAAct                         >  1:20539198/1‑33
              ATCGTTCTGCGCTGTGATCTGGCTGGGAAAAAAAT                         >  1:3924247/1‑35
                 GTTCTGCGCTGTGATCTGGCTGGGAAAAAAATttt                      >  1:16201907/1‑32
                                  GGCTGGGAAAAAAATATAAGCGATTATTTAAAAAA     >  1:18608557/1‑35
                                  GGCTGGGAAAAAAATATAAGCGATTATTTAAAAAA     >  1:19133477/1‑35
                                  GGCTGGGAAAAAAATATAAGCGATTATTTAAAAAA     <  1:2619710/35‑1
                                   GCTGGGAAAAAAATATAAGCGATTATTTAAAAAAT    <  1:12946803/35‑1
                                   GCTGGGAAAAAAATATAAGCGATTATTTAAAAAAT    >  1:10491770/1‑35
                                   GCTGGGAAAAAAATATAAGCGATTATTTAAAAAAT    >  1:5182388/1‑35
                                   GCTGGGAAAAAAATATAAGCGATTATTTAAAAAAT    <  1:5170351/35‑1
                                    CTGGGAAAAAAATATAAGCGATTATTTAAAAAATA   <  1:14802851/35‑1
                                    CTGGGAAAAAAATATAAGCGATTATTTAAAAAATA   <  1:1868350/35‑1
                                    CTGGGAAAAAAATATAAGCGATTATTTAAAAAATA   <  1:17952124/35‑1
                                     TGGGAAAAAAATATAAGCGATTATTTAAAAAATAT  <  1:46747/35‑1
                                     TGGGAAAAAAATATAAGCGATTATTTAAAAAATAT  >  1:3036409/1‑35
                                     TGGGAAAAAAATATAAGCGATTATTTAAAAAATAT  <  1:9418802/35‑1
                                                                        
GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/642956‑642994
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgGGAAAAAAATATAAGCGATTATTTAAAAAATAT  >  REL606/967183‑967215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.