New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3600745 =41 (0.400)9 (0.120) 3/34 NT 18.7% intergenic (+12/+39) treF/yhjB cytoplasmic trehalase/predicted DNA‑binding response regulator in two‑component regulatory system
?REL606 3792210 = 49 (0.670)coding (316/414 nt) ECB_03532 hypothetical protein

Only 100 of 167 total aligned reads displayed.

CGACACGCCGAACGAGCCGAACCGCTTCGGCTGGGTGGGGGAAATCGATCCATATGGTTATTTTTCAGA  >  REL606/3792176‑3792244
                                  |                                  
ttccattttgctggcacgagaaaacttcggctggg                                    >  1:2513761‑M2/34‑35 (MQ=255)
ctgttcctgcaatacacgcagcaacttcgggtggg                                    >  1:824909‑M2/34‑35 (MQ=255)
ctgttcctgcaatacacgcagcaacttcggctggg                                    >  1:6090207‑M2/34‑35 (MQ=255)
ctgttcctgcaatacacgcagcaacttcggctggg                                    >  1:12678453‑M2/34‑35 (MQ=255)
ataattttacagccagcaggaagttagcggctggg                                    >  1:14859057‑M2/35‑35 (MQ=255)
 tgttcctgcaatacacgcagcaacttcggctgggg                                   >  1:10015394‑M2/33‑34 (MQ=255)
 tgttcctgcaatacacgcagcaacttcggctgggg                                   >  1:18518801‑M2/33‑34 (MQ=255)
 tgttcctgcaatacacgcagcaacttcggctgggg                                   >  1:13227504‑M2/33‑34 (MQ=255)
 tccattttgctggcacgagaaaacttcggctgggg                                   >  1:9638748‑M2/33‑34 (MQ=255)
 tccattttgctggcacgagaaaacttcggctgggg                                   >  1:786004‑M2/33‑34 (MQ=255)
 gacACGCCGAACGAGCCTAACCGCTTCGGCtgggg                                   >  1:7252879/1‑34 (MQ=255)
  gttcctgcaatacacgcagcaacttcggctggggg                                  >  1:16889909‑M2/32‑33 (MQ=255)
  gttcctgcaatacacgcagcaacttcggctggggg                                  >  1:19564377‑M2/32‑33 (MQ=255)
  gttcctgcaatacacgcagcaacttcggctggggg                                  >  1:20240763‑M2/32‑33 (MQ=255)
  gttcctgcaatacacgcagcaacttcggctggggg                                  >  1:5513499‑M2/32‑33 (MQ=255)
  gttcctgcaatacacgcagcaacttcggctgggac                                  >  1:14853295‑M2/32‑33 (MQ=255)
  aattttacagccagcaggaagttagcggctggggg                                  >  1:13270661‑M2/33‑33 (MQ=255)
   ttcctgcaatacacgcagcaacttcggctgggggg                                 >  1:2765371‑M2/31‑35 (MQ=255)
   ttcctgcaatacacgcagcaacttcggctgggggg                                 >  1:11644745‑M2/31‑35 (MQ=255)
   ttcctgcaatacacgcagcaacttcggctgggggg                                 >  1:10455857‑M2/31‑35 (MQ=255)
   gatccgctgtttaaagagttggcgcggctgggggg                                 >  1:1355159‑M2/32‑35 (MQ=255)
   gatccgctgtttaaagagttggcgcggctgggggg                                 >  1:15363002‑M2/32‑35 (MQ=255)
   cattttgctggcacgagaaaacttcggctggggcg                                 >  1:1234235‑M2/31‑32 (MQ=255)
   attttacagccagcaggaagttagcggctgggtgg                                 >  1:3805542‑M2/32‑35 (MQ=255)
    ttttacagccagcaggaagttagcggctgggtggg                                >  1:1828605‑M2/31‑35 (MQ=255)
    ttttacagccagcaggaagttagcggctgggtggg                                >  1:17511086‑M2/31‑35 (MQ=255)
    ttttacagccagcaggaagttagcggctggggggg                                >  1:3284442‑M2/31‑35 (MQ=255)
    tcctgcaatacacgcagcaacttcggctggggggg                                >  1:1839989‑M2/30‑35 (MQ=255)
    attttgctggcacgagaaaacttcggctggggggg                                >  1:5622200‑M2/30‑35 (MQ=255)
    attttgctggcacgagaaaacttcggctggggggg                                >  1:19010381‑M2/30‑35 (MQ=255)
     ttttgctggcacgagaaaacttcggctgggggggc                               >  1:835127‑M2/29‑34 (MQ=255)
     ttttgctggcacgagaaaacttcggctgGGGgggg                               >  1:7376667‑M2/29‑35 (MQ=255)
     tttacagccagcaggaagttagcggctggGTgggg                               >  1:15179166‑M2/30‑35 (MQ=255)
     tttacagccagcaggaagttagcggctggCTgggg                               >  1:16482691‑M2/30‑35 (MQ=255)
     cctgcaatacacgcagcaacttcggctgggggggc                               >  1:6666308‑M2/29‑34 (MQ=255)
     cctgcaatacacgcagcaacttcggctgGGGgggg                               >  1:1977314‑M2/29‑35 (MQ=255)
     cctgcaatacacgcagcaacttcggctgGGGgggg                               >  1:7629614‑M2/29‑35 (MQ=255)
      tttgctggcacgagaaaacttcggctgGGGggggg                              >  1:16490765‑M2/28‑35 (MQ=255)
      ctgcaatacacgcagcaacttcggctgGGGggggg                              >  1:340565‑M2/28‑35 (MQ=255)
      ctgcaatacacgcagcaacttcggctgGGGggggg                              >  1:15418527‑M2/28‑35 (MQ=255)
      ccgctgtttaaagagttggcgcggctggGTggggg                              >  1:3095025‑M2/29‑35 (MQ=255)
       ttgctggcacgagaaaacttcggctgGGggggggc                             >  1:3193025‑M2/27‑34 (MQ=255)
       tgcaatacacgcagcaacttcggctgGGggggggg                             >  1:14210332‑M2/27‑34 (MQ=255)
       tgcaatacacgcagcaacttcggctgGGggggggg                             >  1:11034453‑M2/27‑34 (MQ=255)
       tgcaatacacgcagcaacttcggctgGGGGGGGGa                             >  1:1190238‑M2/27‑35 (MQ=255)
       cgctgtttaaagagttggcgcggctgggtggggaa                             >  1:738952‑M2/28‑33 (MQ=255)
       cgctgtttaaagagttggcgcggctggGTGAGGGa                             >  1:3368885‑M2/28‑35 (MQ=255)
       ccGAACGAGCCGAACCGCTTCGGCTGGGGGGGGGa                             >  1:9155747/1‑35 (MQ=255)
        gctgtttaaagagttggcgcggctggGTGGGGGaa                            >  1:5185258‑M2/27‑35 (MQ=255)
        cGAACGAGCCGAACCGCTTCGGCTGGGGGGGGGaa                            >  1:18699225/1‑35 (MQ=255)
        agAACGAACCGATCGGCTTTGTCGGGGTGGGGGat                            >  1:4440903/2‑34 (MQ=16)
        acagccagcaggaagttagcggctggGTGGGGGaa                            >  1:7128610‑M2/27‑35 (MQ=255)
         gAACGAGCCGAACCGCTTCGGCTGGGTGGGGGaaa                           >  1:12298654/1‑35 (MQ=255)
         gAACGAGCCGAACCGCTTCGGCTGGGGGGGGGgaa                           >  1:8077121/1‑35 (MQ=37)
         cagccagcaggaagttagcggctggGTGGGGAaaa                           >  1:251892‑M2/26‑35 (MQ=255)
         cagccagcaggaagttagcggctggCTGGGGGaaa                           >  1:19324930‑M2/26‑35 (MQ=255)
          aaggAGCCGACCCGCTTCGGCTGGGTGGGGGAAAt                          <  1:13064332/32‑1 (MQ=37)
          aaCGAGCCGAACCGCTTCGGCTGGGGGGGGGgaaa                          >  1:15908225/1‑34 (MQ=37)
           gtttaaagagttggcgcggctggGTGGGggaaagc                         >  1:9586665‑M2/24‑33 (MQ=255)
           gggAGCCGAACCGCTTCGGCTGGGTGGGGGAAATc                         <  1:12923334/33‑1 (MQ=255)
            ggAGCCGACCCGCTTCGGCTGGGTGGGGGAAATCg                        <  1:2447458/34‑1 (MQ=255)
             gAGCCGACCCGCTTCGGCTGGGTGGGGGAAATCGa                       <  1:5675628/35‑1 (MQ=255)
             gAGCCAACCCGCTTCGGCTGGGTGGGGGAAATCGa                       <  1:13010300/35‑1 (MQ=37)
              ggCCGACCCGCTTCGGCTGGGTGGGGGAAATCGAt                      <  1:13177454/34‑1 (MQ=255)
              cgCCGAACCGCTTCGGCTGGGTGGGGGAAATCGAt                      <  1:13566971/34‑1 (MQ=255)
              aGCCGAACCGCTTCGGCTGGGTGGGGGGAAACgct                      >  1:6622781/1‑33 (MQ=21)
              aGCCGAACCGCTTCGGCTGGGTGGGGGAAATCGAt                      <  1:4253547/35‑1 (MQ=255)
               gCCGACCCGCTTCGGCTGGGTGGGGGAAATCGATc                     <  1:9395103/35‑1 (MQ=255)
               gCCGAACCGCTTCGGCTGGGTGGGGGAAATCGATc                     <  1:7635466/35‑1 (MQ=255)
               gCCGAACCGCTTCGGCTGGGTGGGGGAAATCGATc                     <  1:10618285/35‑1 (MQ=255)
               gCCGAACCGCTTCGGCTGGGTGGGGGAAATCGATc                     <  1:6225987/35‑1 (MQ=255)
               cccGACCCGCTTCGGCTGGGTGGGGGAAATCGATc                     <  1:4511805/34‑1 (MQ=255)
                ccGAACCGCTTCGGCTGGGTGGGGGAAATAGATcc                    <  1:11698575/35‑1 (MQ=255)
                 cGACCCGCTTCGGCTGGGTGGGGGAAATCGATCCa                   <  1:14565636/35‑1 (MQ=255)
                 cGAACCGCTTCGGCTGGGTGGGGGAAATCGATCCa                   <  1:19226551/35‑1 (MQ=255)
                 cGAACCGCTTCGGCTGGGCGGGGGAAATAGATCCa                   >  1:4002917/1‑35 (MQ=37)
                  gAACCGCTTCGGCTGGGTGGGGGAAATCGATCCat                  <  1:11484526/35‑1 (MQ=255)
                  gAACCGCTTCGGCTGGGTGGGGGAAATCGATCCat                  <  1:9472566/35‑1 (MQ=255)
                    aCCGCTTCGGCTGGGTGGGGGAAATCGATCCatat                <  1:10312132/35‑1 (MQ=255)
                    aCCGCTTCGGCTGGGTGGGGGAAATCGATCCatat                <  1:791244/35‑1 (MQ=255)
                    aCCGCTTCGGCTGGGTGGGGGAAATCGATCCatat                <  1:4754978/35‑1 (MQ=255)
                    aCCGCTTCGGCTGGGTGGGGGAAATCGATCCatat                >  1:4075402/1‑35 (MQ=255)
                    aCCGCTTCGGCTGGGGGGGGGAAATCGATCCatat                >  1:14054381/1‑35 (MQ=255)
                      cGCTTCGGCTGGGTGGGGGAAATCGATCCATATgg              <  1:4640023/35‑1 (MQ=255)
                      cGCTTCGGCTGGGTGGGGGAAATCGATCCATATgg              <  1:4447347/35‑1 (MQ=255)
                       gCTTCGGCTGGGTGGGGGAAATCGATCCATATGGt             <  1:15463170/35‑1 (MQ=255)
                          tcggctgGGTGGGGGAAATCGATCCATATGGTTAt          <  1:19013258‑M2/28‑1 (MQ=255)
                           cggctggGTGGGGGAAATCGATCCATATGGTTAtt         <  1:17922336‑M2/28‑1 (MQ=255)
                            ggctggGTGGGGGAAATCGATACATATGGTTAttt        <  1:20097486‑M2/29‑1 (MQ=255)
                             gctggGTGGGGGAAATCGATCCATATGGTTAtttt       <  1:1984745‑M2/30‑1 (MQ=255)
                             gctggGTGGGGGAAATCGATCCATATGGTTAtttt       <  1:1757506‑M2/30‑1 (MQ=255)
                              ctggGTGGGGGAAATCGATCCATATGGTTAttttt      <  1:7692850‑M2/31‑1 (MQ=255)
                              ctggGTGGGGGAAATCGATCCATATGGTTAttttt      <  1:20495253‑M2/31‑1 (MQ=255)
                               tggGTGGGGGAAATCTATCCATATGGTTATTTTTc     >  1:16041226‑M2/4‑35 (MQ=255)
                               tggGTGGGGGAAATCGATCCATATGGTTATTTTTc     >  1:13859242‑M2/4‑35 (MQ=255)
                               caggtggtGGAAATCGATCCATATGGTTATTTTTc     >  1:19305838/3‑35 (MQ=38)
                                 gGTGGGGGAAATCGATCCATATGGTTATTTTTCAg   >  1:7544366‑M2/2‑35 (MQ=255)
                                 gGTGGGGGAAATCGATCCATATGGTTATTTTTCAg   <  1:17461139‑M2/34‑1 (MQ=255)
                                 gGTGGGGGAAATCGATCCATATGGTTATTTTTCAg   <  1:15877813‑M2/34‑1 (MQ=255)
                                  gtgggGGAAATCGATCCATATGGTTATTTTTCAGa  >  1:18146859/1‑35 (MQ=255)
                                  |                                  
CGACACGCCGAACGAGCCGAACCGCTTCGGCTGGGTGGGGGAAATCGATCCATATGGTTATTTTTCAGA  >  REL606/3792176‑3792244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.