New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1337070 =141 (1.370)6 (0.070) 5/42 NT 7.6% coding (463/591 nt) ribA GTP cyclohydrolase II protein
?REL606 4326307 = 22 (0.240)coding (1153/1341 nt) dcuB C4‑dicarboxylate antiporter

Only 100 of 214 total aligned reads displayed.

ACAATATTAATCCCTGCTTCGGTCAGAATTTCGACTTTTTTCGGGTTATTGGTTAACAAGCGGACTTCA  >  REL606/1337036‑1337104
                                  |                                  
gttgatccggcatacatcgtggcttcagcaccggc                                    >  1:997233‑M1/35‑35 (MQ=255)
acaaTATTAATCCCTGCTTCGGTCAGAATTTCGAc                                    >  1:4273062/1‑35 (MQ=255)
acaaTATTAATCCCTGCTTCGGTCAGAATTTCGAc                                    <  1:11457526/35‑1 (MQ=255)
 ttgatccggcatacatcgtggcttcagcaccggCt                                   >  1:17001189‑M1/34‑35 (MQ=255)
 caaTATTAATCCCTGCTTCGGTCAGAATTTCGACt                                   >  1:8693070/1‑35 (MQ=255)
 caaTATTAATCCCTGCTTCGGTCAGAATTTCGACt                                   >  1:2264980/1‑35 (MQ=255)
 caaTATTAATCCCTGCTTCGGTCAGAATTTCGACt                                   <  1:17273998/35‑1 (MQ=255)
 caaTATTAATCCCTGCTTCGGTCAGAATTTCGACt                                   <  1:10098681/35‑1 (MQ=255)
  tgatccggcatacatcgtggcttcagcaccggCtt                                  <  1:9770302‑M1/3‑1 (MQ=255)
  aaTATTAATCCCTGCTTCGGTCAGAATTTCGACtt                                  >  1:11930587/1‑35 (MQ=255)
   gatccggcatacatcgtggctttagcaccggCttt                                 <  1:15816083‑M1/4‑1 (MQ=255)
   gatccggcatacatcgtggcttcagccccggCttt                                 <  1:2847948‑M1/4‑1 (MQ=255)
   gatccggcatacatcgtggcttcagcaccggCttt                                 <  1:19267876‑M1/4‑1 (MQ=255)
   atatTAATCCCTGCTTCTGTCAGAATTTCGACttt                                 >  1:9608241/1‑35 (MQ=255)
   atatTAATCCCTGCTTCGGTCAGAATTTCGACttt                                 <  1:7508928/35‑1 (MQ=255)
   atatTAATCCCTGCTTCGGTCAGAATTTCGACttt                                 <  1:4887945/35‑1 (MQ=255)
    tatTAATCCCTGCTTCGGTCAGAATTTCGACtttt                                >  1:6973898/1‑35 (MQ=255)
    tatTAATCCCTGCTTCGGTCAGAATTTCGACtttt                                >  1:15556119/1‑35 (MQ=255)
    tatTAATCCCTGCTTCGGTCAGAATTTCGACtttt                                <  1:5419895/35‑1 (MQ=255)
    tatTAATCCCTGCTTCGGTCAGAATTTCGACtttt                                >  1:2598751/1‑35 (MQ=255)
     atTAATCCCTGCTTCGGTCAGAATTTCGACttttt                               <  1:19018492/35‑1 (MQ=255)
     atTAATCCCTGCTTCGGTCAGAATTTCGACttttt                               <  1:13949504/35‑1 (MQ=255)
     atTAATCCCTGCTTCGGTCAGAATTTCGACttttt                               <  1:5802247/35‑1 (MQ=255)
     atTAATCACTGCTTCGGTCAGAATTTCGACttttt                               <  1:3799297/35‑1 (MQ=255)
      ttAATCCCTGCTTCGGTCAGAATTTCGACtttttt                              <  1:3515146/35‑1 (MQ=255)
      ttAATCCCTGCTTCGGTCAGAATTTCGACtttttt                              <  1:2671286/35‑1 (MQ=255)
      ttAATCCCTGCTTCGGTCAGAATTTCGACtttttt                              <  1:20545897/35‑1 (MQ=255)
      ttAATCCCTGCTTCGGTCAGAATTTCGACtttttt                              >  1:5527889/1‑35 (MQ=255)
      ttAATCCCTGCTTCGGTCAGAATTTCGACtttttt                              >  1:7832947/1‑35 (MQ=255)
       tAATCCCTGCTTCGGTCAGAATTTCGACTTTTTTc                             <  1:15291795/35‑1 (MQ=255)
        ggcatacatcgtggcttcagcaccggctttttccg                            <  1:201886‑M1/9‑4 (MQ=255)
        aaTCCCTGCTTCGGTCAGAATTTCGACTTTTTTCg                            >  1:6534416/1‑35 (MQ=255)
        aaTCCATGCTTCGGTCAGAATTTCGACTTTTTTCg                            <  1:4153181/35‑1 (MQ=255)
         aTCCCTGCTTCGGTCAGAATTTCGACTTTTTTCgg                           <  1:5136432/35‑1 (MQ=255)
         aTCCCTGCTTCGGTCAGAATTTCGACTTTTTTCgg                           <  1:11142396/35‑1 (MQ=255)
         aTCCCTGCTTCGGTCAGAATTTCGACTTTTTTCgg                           <  1:1312205/35‑1 (MQ=255)
         aTCCCTGCTTCGGTCAGAATTTCGACTTTTTTCgg                           <  1:16514090/35‑1 (MQ=255)
          tCCCTGCTTCGGTCAGAATTTCGACTTTTTTCggg                          >  1:126431/1‑35 (MQ=255)
          tCCCTGCTTCGGTCAGAATTTCGACTTTTTTCggg                          <  1:4809447/35‑1 (MQ=255)
          tCCCTGCTTCGGTCAGAATTTCGACTTTTTTCggg                          <  1:16676245/35‑1 (MQ=255)
           cccTGCTTCGGTCAGAATTTCGACTTTTTTCGGGt                         <  1:1189160/35‑1 (MQ=255)
           cccTGCTTCGGTCAGAATTTCGACTTTTTTCGGGt                         <  1:7057048/35‑1 (MQ=255)
           cccTGCTTCGGTCAGAATTTCGACTTTTTTCGGGt                         >  1:2560622/1‑35 (MQ=255)
            ccTGCTTCGGTCAGAATTTCGACTTTTTTCGGGtt                        <  1:11569655/35‑1 (MQ=255)
            ccTGCTTCGGTCAGAATTTCGACTTTTTTCGGGtt                        <  1:9669619/35‑1 (MQ=255)
            ccTGCTTCGGTCAGAATTTCGACTTTTTTCGGGtt                        <  1:7962564/35‑1 (MQ=255)
            ccTGCTTCGGTCAGAATTTCGACTTTTTTCGGGtt                        <  1:1093678/35‑1 (MQ=255)
             cTGCTTCGGTCAGAATTTCGACTTTTTTCGGGTTa                       <  1:8489390/35‑1 (MQ=255)
             cTGCTTCGGTCAGAATTTCGACTTTTTTCGGGTTa                       >  1:5885891/1‑35 (MQ=255)
             cTGCTTCGGTCAGAATTTCGACTTTTTTCGGGTTa                       <  1:3097601/35‑1 (MQ=255)
              tGCTTCGGTCAGAATTTCGACTTTTTTCGGGTTAt                      <  1:4029169/35‑1 (MQ=255)
              tGCTTCGGTCAGAATTTCGACTTTTTTCGGGTTAt                      <  1:18133830/35‑1 (MQ=255)
              tGCTTCGGTCAGAATTTCGACTTTTTTCGGGTTAt                      >  1:17696932/1‑35 (MQ=255)
              tGCTTCGGTCAGAATTTCGACTTTTTTCGGGTTAt                      <  1:17567826/35‑1 (MQ=255)
               gCTTCGGTCAGAATTTCGACTTTTTTCGGGTTAtt                     <  1:11025659/35‑1 (MQ=255)
               gCTTCGGTCAGAATTTCGACTTTTTTCGGGTTAtt                     >  1:4699226/1‑35 (MQ=255)
               gCTTCGGTCAGAATTTCGACTTTTTTCGGGTTAtt                     <  1:6770332/35‑1 (MQ=255)
                cTTCGGTCAGAATTTCGACTTTTTTCGGGTTATTg                    >  1:18452383/1‑35 (MQ=255)
                 ttCGGTCAGAATTTCGACTTTTTTCGGGTTATTgg                   >  1:14738892/1‑35 (MQ=255)
                 ttCGGTCAGAATTTCGACTTTTTTCGGGTTATTgg                   >  1:2508644/1‑35 (MQ=255)
                  tctgTCAGAATTTCGACTTTTTTCGGGTTATTGGt                  <  1:4788105/32‑1 (MQ=255)
                  tCGGTCAGAATTTCGACTTTTTTCGGGTTATTGGt                  <  1:10809817/35‑1 (MQ=255)
                  tCGGTCAGAATTTCGACTTTTTTCGGGTTATTGGt                  <  1:19455757/35‑1 (MQ=255)
                  tCGGTCAGAATTTCGACTTTTTTCGGGGTATTGGt                  >  1:14801970/1‑35 (MQ=255)
                   cGGTCAGAATTTCGACTTTTTTCGGGTTATTGGtt                 <  1:19656168/35‑1 (MQ=255)
                   cGGTCAGAATTTCGACTTTTTTCGGGTTATTGGtt                 >  1:12103432/1‑35 (MQ=255)
                    ggTCAGAATTTCGACTTTTTTCGGGTTATTGGTTa                >  1:14514230/1‑35 (MQ=255)
                    ggTCAGAATTTCGACTTTTTTCGGGTTATTGGTTa                >  1:18793391/1‑35 (MQ=255)
                    ggTCAGAATTTCGACTTTTTTCGGGTTATTGGTTa                <  1:5190553/35‑1 (MQ=255)
                     gTCAGAATTTCGACTTTTTTCGGGTTATTGGTTaa               >  1:797553/1‑35 (MQ=255)
                     gTCAGAATTTCGACTTTTTTCGGGTTATTGGTTaa               >  1:16161512/1‑35 (MQ=255)
                      tCAGAATTTCTACTTTTTTCGGGTTATTGGTTAAc              >  1:11592346/1‑35 (MQ=255)
                      tCAGAATTTCGACTTTTTTCTGGTTATTGGTTAAc              >  1:14060092/1‑35 (MQ=255)
                      tCAGAATTTCGACTTTTTTCGGGTTATTGGTTAAc              >  1:17602631/1‑35 (MQ=255)
                       cAGAATTTCGACTTTTTTCGGGTTATTGGTTAACa             <  1:13233377/35‑1 (MQ=255)
                       cAGAATTTCGACTTTTTTCGGGTTATTGGTTAACa             >  1:7559765/1‑35 (MQ=255)
                       cAGAATTTCGACTTTTTTCGGGTTATTGGTTAACa             <  1:1596275/35‑1 (MQ=255)
                        aGAATTTCGACTTTTTTCGGGTTATTGGTTAACaa            <  1:8358206/35‑1 (MQ=255)
                         gAATTTCGACTTTTTTCGGGTTATTGGTTAACAAg           <  1:13588434/35‑1 (MQ=255)
                         gAATTTCGACTTTTTTCGGGTTATTGGTTAACAAg           <  1:17398730/35‑1 (MQ=255)
                          aaTTTCGACTTTTTTCGGGTTATTGGTTAACAAGc          >  1:9451428/1‑35 (MQ=255)
                          aaTTTCGACTTTTTTCGGGTTATTGGTTAACAAGc          >  1:6202483/1‑35 (MQ=255)
                           aTTTCGACTTTTTTCGGGTTATTGGTTAACAAGCg         <  1:7733548/35‑1 (MQ=255)
                           aTTTCGACTTTTTTCGGGTTATTGGTTAACAAGCg         >  1:12496931/1‑35 (MQ=255)
                           aTTTCGACTTTTTTCGGGTTATTGGTTAACAAGCg         <  1:19223331/35‑1 (MQ=255)
                           aTTTCGACTTTTTTCGGGTTATTGGTTAACAAGCg         <  1:507219/35‑1 (MQ=255)
                            tttCGACTTTTTTCGGGTTATTGGTTAACAAGCgg        >  1:12861063/1‑35 (MQ=255)
                            tttCGACTTTTTTCGGGTTATTGGTTAACAAGCgg        >  1:13013254/1‑35 (MQ=255)
                             ttCGACTTTTTTCGGGTTATTGGTTAACAAGCGGa       >  1:7030850/1‑35 (MQ=255)
                             ttCGACTTTTTTCGGGTTATTGGTTAACAAGCGGa       >  1:3048300/1‑35 (MQ=255)
                             ttCGACTTTTTTCGGGTTATTGGTTAACAAGCGGa       >  1:6176914/1‑35 (MQ=255)
                             ttCGACTTTTTTCGGGTTATTGGTTAACAAGCGGa       <  1:10493717/35‑1 (MQ=255)
                             ttCGACTTTTTTCGGGTTATTGGTTAACAAGCGGa       >  1:10608233/1‑35 (MQ=255)
                              tCGACTTTTTTCGGGTTATTGGTTAACAAGCGGAc      <  1:926126/35‑1 (MQ=255)
                               cGACTTTTTTCGGGTTATTGGTTAACAAGCGGACt     <  1:15014711/35‑1 (MQ=255)
                               cGACTTTTTTCGGGTTATTGGTTAACAAGCGGACt     >  1:13504726/1‑35 (MQ=255)
                               cGACTTTTTTCGGGTTATTGGTTAACAAGCGGACt     <  1:16804815/35‑1 (MQ=255)
                               cGACTTTTTTCGGGTTATTGGTTAACAAGCGGACt     >  1:747164/1‑35 (MQ=255)
                                 aCTTTTTTCGGGTTATTGGTTAACAAGCGGACTTc   >  1:14573577/1‑35 (MQ=255)
                                  CTTTTTTCGGGTTATTGGTTAACAAGCGGACTTCa  <  1:9353470‑M1/35‑1 (MQ=255)
                                  |                                  
ACAATATTAATCCCTGCTTCGGTCAGAATTTCGACTTTTTTCGGGTTATTGGTTAACAAGCGGACTTCA  >  REL606/1337036‑1337104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.