New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1830987 = | 34 (0.330) | 6 (0.080) | 4/36 | NT | 13.9% | coding (221/1359 nt) | ydjE | predicted transporter |
? | REL606 | = 1996585 | 49 (0.640) | coding (1262/1644 nt) | yeeO | predicted multidrug efflux system |
Only 100 of 107 total aligned reads displayed.
CTGGGTGTAAAACGATGCCATAACCCCGGCAAA‑GGGAGCCGTTAGCCAGGCGATGGCCGTTAATCCAAG > REL606/1996551‑1996619 | cTGGGTGTAAAACGATGCCATAACCCCGGCAAA‑gg > 1:18149595/1‑35 (MQ=255) cTGGGTGTAAAACGATGCCATAACCCCGGCAAA‑gg > 1:12702890/1‑35 (MQ=255) cTGGGTGTAAAACGATGCCATAACCCCGGCAAA‑gg < 1:3188620/35‑1 (MQ=255) cTGGGTGTAAAACGATGCCATAACCCCGGCAAA‑gg > 1:6432158/1‑35 (MQ=255) tGGGTGTAAAACGATGCCATAACCCCGGCAAA‑GGg < 1:14915155‑M2/35‑2 (MQ=255) tGGGTGTAAAACGATGCCATAACCCCGGCAAA‑GGg > 1:2679925‑M2/1‑34 (MQ=255) tGGGTGTAAAACGATGCCATAACCCCGGCAAA‑GGg < 1:10585439‑M2/35‑2 (MQ=255) gggTGTAAAACGATGCCATAACCCCGGCAAA‑GGga > 1:12485819‑M2/1‑33 (MQ=255) gggTGTAAAACGATGCCATAACCCCGGCAAA‑GGga < 1:5687446‑M2/35‑3 (MQ=255) gggTGTAAAACGATGCCATAACCCCGGCAAA‑GGga > 1:11943329‑M2/1‑33 (MQ=255) gggTGTAAAACGATGCCATAACCCCGGCAAA‑GGga < 1:10818660‑M2/35‑3 (MQ=255) ggTGTAAAACGATGCCATAACCCCTGCAAA‑GGgag < 1:3786344‑M2/35‑4 (MQ=255) ggTGTAAAACGATGCCATAACCCCGGCAAA‑GGgag < 1:10666178‑M2/35‑4 (MQ=255) ggTGTAAAACGATGCCATAACCCCGGCAAA‑GGgag < 1:16930980‑M2/35‑4 (MQ=255) ggTGTAAAACGATGCCATAACCCCGGCAAA‑GGTAg > 1:919049/1‑35 (MQ=255) gtgtAAACCGATGCCATAACCCCGGCAAA‑GGgagc > 1:13475329‑M2/1‑31 (MQ=255) gtgtAAAACGATGCCATAACCTCGGCAAA‑GGgagc < 1:9361167‑M2/35‑5 (MQ=255) gtgtAAAACGATGCCATAACCCCGGCAAA‑GGgagc < 1:2176140‑M2/35‑5 (MQ=255) tgtAAAACGATGCCATAACCCCGGCAAA‑GGgagcc > 1:1586854‑M2/1‑30 (MQ=255) tgtAAAACGATGCCATAACCCCGGCAAA‑GGgagcc > 1:4810066‑M2/1‑30 (MQ=255) tgtAAAACGATGCCATAACCCCGGCAAA‑GGgagcc < 1:7030298‑M2/35‑6 (MQ=255) tgtAAAACGATGCCATAACCCCGGCAAA‑GGgagcc > 1:6463181‑M2/1‑30 (MQ=255) tAAAACGATGCCATAACCCCGGCAAA‑GGgagcagt > 1:10828241‑M2/1‑28 (MQ=255) tAAAACGATGCCATAACCCCGGCAAA‑GGGAGCCGt < 1:3076909/35‑1 (MQ=255) aaaaCGATGCCATAACCCCGGCAAA‑GGGAGCCGtt > 1:6995775/1‑35 (MQ=255) aaaaCGATGCCATAACCCCGGCAAA‑GGGAGCCGtt > 1:5262795/1‑35 (MQ=255) aaaCGATGCCATAACCCCGGCAAA‑GGGAGCCGTTa > 1:546377/1‑35 (MQ=255) aaCGATGCCATAACCCCGGCAAA‑GGGAGCCGTTAg < 1:12389922/35‑1 (MQ=255) aaCGATGCCATAACCCCGGCAAA‑GGGAGCCGTTAg > 1:11225053/1‑35 (MQ=255) aCGATGCCATAACCCCGGCAAA‑GGGAGCCGTTAGc > 1:19457377/1‑35 (MQ=255) aCGATGCCATAACCCCGGCAAA‑GGGAGCCGTTAGc > 1:6192058/1‑35 (MQ=255) cGATGCCATAACCCCGGCAAA‑GGGAGCCGTTAGcc > 1:19575063/1‑35 (MQ=255) gATGCCATAACCCCGGCAAA‑GGGAGCCGTTAGCCa > 1:5413516/1‑35 (MQ=255) gATGCCATAACCCCGGCAAA‑GGGAGCCGTTAGCCa > 1:15989559/1‑35 (MQ=255) gATGCCATAACCCCGGCAAA‑GGGAGCCGTTAGCCa > 1:3841688/1‑35 (MQ=255) gtGCCAAAACCCCGGGAAAGGGGAGCCGTTAGCCa < 1:11707811/34‑1 (MQ=16) aTGCCATAACCCCGGCAAA‑GGGAGCCGTTAGCCAg > 1:19103684/1‑35 (MQ=255) aTGCCATAACCCCGGCAAA‑GGGAGCCGTTAGCCAg > 1:15673378/1‑35 (MQ=255) aTGCCATAACCCCGGCAAA‑GGGAGCCGTTAGCCAg > 1:10500388/1‑35 (MQ=255) aTGCCATAACCCCGGCAAA‑GGGAGCCGTTAGCCAg > 1:6804165/1‑35 (MQ=255) aTGCCATAACCCCGGCAAA‑GGGAGCCGTTAGCCAg > 1:17934138/1‑35 (MQ=255) gCCATACCCCCGGCAAG‑GGGAGCCGTTAGCCAGGc < 1:12927891/35‑1 (MQ=37) gCCATAACCCCGGCAAA‑GGGAGCCGTTAGCCAGGc > 1:5479504/1‑35 (MQ=255) ccATAACCCCGGCAAA‑GGGAGCCGTTAGCCAGGCg > 1:4056916/1‑35 (MQ=255) ccATAACCCCGGCAAA‑GGGAGCCGTTAGCCAGGCg > 1:3772073/1‑35 (MQ=255) ccATAACCCCGGCAAA‑GGGAGCCGTTAGCCAGGCg > 1:918239/1‑35 (MQ=255) cATAACCCCGGCAAA‑GGGAGCCGTTAGCCAGGCGa > 1:8496427/1‑35 (MQ=255) cATAACCCCGGCAAA‑GGGAGCCGTTAGCCAGGCGa > 1:20393728/1‑35 (MQ=255) aaTACCCCCGGCAAG‑GGGAGCCGTTAGCCAGGCGa < 1:12821114/34‑1 (MQ=37) aTAACCCCGGCAAA‑GGGAGCCGTTAGCCAGGCGAt > 1:16219801/1‑35 (MQ=255) aTAACCCCGGCAAA‑GGGAGCCGTTAGCCAGGCGAt > 1:1930889/1‑35 (MQ=255) tacccccGGCAAG‑GGGAGCCGTTAGCCAGGCGATg < 1:19387946/32‑1 (MQ=37) tacccccGGCAAA‑GGGAGCCGTTAGCAAGGCGATg < 1:13290381/32‑1 (MQ=38) tacccccGGAAAG‑GGGAGCCGTTAGCCAGGCGATg < 1:14340223/32‑1 (MQ=25) gacccccGGAAAG‑GGGAGCCGTTAGCCAGGCGATg < 1:8642628/32‑1 (MQ=25) acccccGGCAAG‑GGGAGCCGTTAGCCAGGCGATgg < 1:10202426/33‑1 (MQ=38) acccccGGCAAG‑GGGAGCCGTTAGCCAGGCGATgg < 1:6818704/33‑1 (MQ=38) acccccGGCAAA‑GGGAGCCGTTAGCCAGGCGATgg < 1:1023700/33‑1 (MQ=255) acccccGGAAAA‑GGGAGCCGTTAGCCAGGCGATgg < 1:14821932/33‑1 (MQ=37) acccccGAAAAG‑GGGAGCCGTTAGCCAGGCGATgg < 1:3902071/33‑1 (MQ=21) aaCCCCGGCAAA‑GGGAGCCGTTAGCCAGGCGATgg > 1:1820244/1‑35 (MQ=255) aaCCCCGGCAAA‑GGGAGCCGTTAGCCAGGCGATgg > 1:10248037/1‑35 (MQ=255) cccccgGGAAA‑GGgagccgatgaaataaccaaaca > 1:2694542‑M2/2‑13 (MQ=255) cccccGGCAAG‑GGGAGCCATTAGCCAGGCGATGGc < 1:5198578/34‑1 (MQ=25) ccccGGGAAA‑GGgagccgatgaaataaccaaacat > 1:6924732‑M2/1‑12 (MQ=255) ccccGGGAAA‑GGgagccgatgaaataaccaaacat > 1:15027576‑M2/1‑12 (MQ=255) ccccGGCAAA‑GGGAGCCGTTAGCCAGGCGATGGcc > 1:4200826/1‑35 (MQ=255) ccccGGAAAG‑GGGAGCCGTTAGCCAGGCGATGGcc < 1:3595389/35‑1 (MQ=37) ccccGGAAAG‑GGGAGCCGTTAGCCAGGCGATGGcc < 1:4895207/35‑1 (MQ=37) cccGGGAAA‑GGgagccgatgaaataaccaaacatt > 1:3944599‑M2/1‑11 (MQ=255) cccGGCAAA‑GGGAGCCGTTAGCCAGGCGATGGCCg > 1:6210000/1‑35 (MQ=255) cccGGCAAA‑GGGAGCCGTTAGCCAGGCGATGGCCg > 1:13927290/1‑35 (MQ=255) cccGGCAAA‑GGGAGCCGTTAGCCAGGCGATGGCCg > 1:15901259/1‑35 (MQ=255) ccGGGAAAGGGGAGCCGTTAGCCAGGCGATGGCCg < 1:5556690/35‑1 (MQ=25) ccGGGAAA‑GGgagccgatgaaataaccaaacatta > 1:4623321‑M2/1‑10 (MQ=255) ccGGCAAA‑GGGAGCCGTTAGCCAGGCGATGGCCgg > 1:6020417/1‑34 (MQ=255) cGGCAAA‑GGGAGCCGTTAGCCAGGCGATGGCCggt > 1:11492080/1‑33 (MQ=255) cGGCAAA‑GGGAGCCGTTAGCCAGGCGATGGCCggt > 1:8839749/1‑33 (MQ=255) ggGAAA‑GGgagccgatgaaataaccaaacattaat > 1:12789494‑M2/1‑8 (MQ=255) gCAAA‑GGGAGCCGTTAGCCAGGCGATGGCCGGTaa > 1:5045189/1‑35 (MQ=255) gCAAA‑GGGAGCCGTTAGCCAGGCGATGGCCGGTaa > 1:2065898/1‑35 (MQ=255) gCAAA‑GGGAGCCGTTAGCCAGGCGATGGCAGTTaa < 1:16815695/35‑1 (MQ=255) gaag‑gGgagccgatgaaataaccaaacattaatgc > 1:9581073‑M2/2‑6 (MQ=255) gaag‑gGgagccgatgaaataaccaaacattaatgc > 1:13457623‑M2/2‑6 (MQ=255) aaa‑GGGAGCCGTTAGCCAGGCGATGGCCGGTAATc > 1:1644478/1‑35 (MQ=255) aaa‑GGGAGCCGTTAGCCAGGCGATGGCCGGTAATc > 1:13802962/1‑35 (MQ=255) aaa‑GGGAGCCGTTAGCCAGGCGATGGCCGGTAATc > 1:13014881/1‑35 (MQ=255) aaa‑GGGAGCCGTTAGCCAGGCGATGGCCGGTAATc > 1:7391439/1‑35 (MQ=255) aaa‑GGGAGCCGTTAGCCACGCGATGGCCGGTAATc > 1:8821876/1‑35 (MQ=37) aa‑GGgagccgatgaaataaccaaacattaatgccg > 1:135099‑M2/1‑4 (MQ=255) aa‑GGGAGCCGTTAGCCAGGCGATGGCCGTTAATcc > 1:10853889/1‑35 (MQ=255) aa‑GGGAGCCGTTAGCCAGGCGATGGCCGTTAACcc > 1:12240553/1‑35 (MQ=255) aa‑GGGAGCCGTTAGCCAGGCGATGGCCCCTAATcc > 1:18867582/1‑35 (MQ=37) a‑GGGAGCCGTTAGCCAGGCGATGGCCGGTAATccc > 1:10143151/1‑34 (MQ=255) ggggagccgatgaaataaccaaacattaatgccga > 1:6340809‑M2/2‑3 (MQ=255) gggagccgatgaaataaccaaacattaatgccgag > 1:13517369‑M2/1‑2 (MQ=255) gggAGCCGTTAGCCAGGCGATGGCCGGTAAACCaa > 1:16227241/1‑35 (MQ=37) gggAGCCGTTAGCCAGGCGATGGCCGGTAAACCaa > 1:19825291/1‑35 (MQ=37) ggAGCCGTTAGCCAGGCGATGGCCGGTAATCCaaa > 1:10268467/1‑34 (MQ=255) ggAGCCGTTAGCCAGGCGATGGCCGGTAATCCAag > 1:8208385/1‑35 (MQ=255) | CTGGGTGTAAAACGATGCCATAACCCCGGCAAA‑GGGAGCCGTTAGCCAGGCGATGGCCGTTAATCCAAG > REL606/1996551‑1996619 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |