New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3016826 =44 (0.430)12 (0.160) 5/36 NT 14.8% coding (561/741 nt) ECB_02817 KpsU protein
?REL606 3882315 = 105 (1.360)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

TGATTCTGCCTGCTCCTGCATGGACTCCGGTAACTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3016865‑3016826
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGGGGGTTTTGTGGATCCACCAGCGAGAATGTA  >  REL606/3882315‑3882346
                                                                        
TGATTCTGCCTGCTCCTGCATGGACTCCTGTAACT                                       >  1:1341152/1‑35
TGATTCTGCCTGCTCCTGCATGGACTCCGGTAACT                                       <  1:8868164/35‑1
TGATTCTGCCTGCTCCTGCATGGACTCCGGTAACT                                       >  1:3767589/1‑35
TGATTCTGCCTGCTCCTGCATGGACTCCGGTAACT                                       >  1:8415053/1‑35
 tcTTCTGCCTGCTCCTGCATGGACTCCGGTAACTG                                      <  1:6218001/33‑1
 GATTCTGCCTGCTCCTGCATGGACTCCGGTAACTG                                      >  1:2498887/1‑35
 GATTCTGCCTGCTCCTGCATGGACTCCGGTAACTG                                      >  1:20539161/1‑35
 GATTCTGCCTGCTCCTGCATGGACTCCGGTAACTG                                      <  1:6506907/35‑1
 GATTCTGCCTGCTCCTGCATGGACTCCGGTAACTG                                      >  1:121791/1‑35
 GATTCTGCCTGCTCCTGCATGGACTCCGGTAACTG                                      <  1:11928731/35‑1
 GATTCTGCCTGCTCCTGCATGGACTCCGGTAACTG                                      >  1:7414619/1‑35
 GATTCTGCCTGCTCCTGCATGGACTCAGGTAACTG                                      <  1:10094466/35‑1
 GATTCTGCATGCTCCTGCATGGACTCCGGTAACTG                                      <  1:3914933/35‑1
  ATTCTGCCTGCTCCTGCATGGACTCCGGTAACTGG                                     <  1:18630600/35‑1
  ATTCTGCCTGCTCCTGCATGGACTCCGGTAACTGG                                     <  1:12431121/35‑1
  ATTCTGCCTGCTCCTGCATGGACTCCGGTAACTGG                                     <  1:16969160/35‑1
  ATTCTGCCTGCTCCTGCATGGACTCCGGTAACTGG                                     <  1:1609335/35‑1
  ATTCTGCCTGCTCCTGCATGGACTCCGGTAACTGG                                     >  1:16576841/1‑35
  ATTCTGCCTGCTCCTGCATGGACTCCGGTAACTGG                                     >  1:16965817/1‑35
   TTCTGCCTGGTCCTGCATGGACTCCGGTAACTGGC                                    <  1:7949870/35‑1
   TTCTGCCTGCTCCTGCATGGACTCCGGTAACTGGC                                    <  1:2253900/35‑1
   TTCTGCCTGCTCCTGCATGGACTCCGGTAACTGGC                                    >  1:4261414/1‑35
   TTCTGCCTGCTCCTGCATGGACTCCGGTAACTGGC                                    <  1:3073/35‑1
    TCTGCCTGCTCCTGCATGGACTCCGGTAACTGGCT                                   <  1:334640/35‑1
    TCTGCCTGCTCCTGCATGGACTCCGGTAACTGGCT                                   >  1:10721811/1‑35
    TCTGCCTGCTCCTGCATGGACTCCGGTAACTGGCT                                   >  1:17673310/1‑35
    TCTGCCTGCTCCTGCATGGACTCCGGTAACTGGCT                                   >  1:13486497/1‑35
    TCTGCCTGCTCCTGCATGGACTCCGGTAACTGGCT                                   <  1:2572915/35‑1
     CTGCCTGCTCCTGCATGGACTCCGGTAACTGGCTG                                  >  1:16607291/1‑35
      TGCCTGCTCCTGCATGGACTCCTGTAACTGGCTGG                                 >  1:15103180/1‑35
      TGCCTGCTCCTGCATGGACTCCGGTAACTGGCTGG                                 >  1:4133008/1‑35
      TGCCTGCTCCTGCATGGACTCCGGTAACTGGCTGG                                 >  1:2013881/1‑35
       GCCTGCTCCTGCATGGACTCCGGTAACTGGCTGGG                                >  1:14761317/1‑35
        CCTGCTCCTGCATGGACTCCGGTAACTGGCTGGGG                               >  1:5647560/1‑35
         CTGCTCCTGCATGGACTCCGGTAACTGGCTGGGGG                              >  1:12400399/1‑35
         CTGCTCCTGCATGGACTCCGGTAACTGGCTGGGGG                              >  1:1728341/1‑35
         CTGCTCCTGCATGGACTCCGGTAACTGGCTGGGGG                              >  1:1466420/1‑35
          TGCTCCTGCATGGACTCCGGTAACTGGCTGGGGGG                             >  1:10157847/1‑35
           GCTCCTGCATGGACTCCGGTAACTGGCTGGGGGGT                            >  1:6961041/1‑35
            CTCCTGCATGGACTCCGGTAACTGGCTGGGGGTTT                           >  1:18900140/1‑35
            CTCCTGCATGGACTCCGGTAACTGGCTGGGGGGTT                           >  1:3061332/1‑35
            CTCCTGCATGGACTCCGGTAACTGGCTGGGGGGTT                           >  1:7055214/1‑35
             TCCTGCATTGACTCCGGTAACTGGCTGGGGGGTTg                          >  1:6856697/1‑34
             TCCTGCATGGACTCCGGTAACTGGCTGGGGGGTTg                          >  1:10053933/1‑34
             TCCTGCATGGACTCCGGTAACTGGCTGGGGGGTTT                          >  1:11174834/1‑35
              CCTGCATGGACTCCGGTAACTGGCTGGGGGGTTgt                         >  1:8148853/1‑33
              CCTGCATGGACTCCGGTAACTGGCTGGGGGGTTTg                         >  1:3711806/1‑34
              CCTGCATGGACTCCGGTAACTGGCTGGGGGGTTTT                         >  1:6475693/1‑35
               CTGCATGGACTCCGGTAACTGGCTGGGGGGTTgta                        >  1:3104288/1‑32
               CTGCATGGACTCCGGTAACTGGCTGGGGGGTTGTG                        >  1:19055405/1‑35
                                  TGGCTGGGGGGTTTTGTGGATCCACCAGCGAGAAT     >  1:1982484/1‑35
                                  TGGCTGGGGGGTTTTGTGGATCCACCAGCGAGAAT     <  1:11692488/35‑1
                                  TGGCTGGGGGGTTTTGTGGATCAACCAGCGAGAAT     <  1:6431257/35‑1
                                   GGCTGGGGGGTTTTGTGGATCCACCAGCGAGAATG    <  1:17195532/35‑1
                                   GGCTGGGGGGTTTTGTGGATCCACCAGCGAGAATG    <  1:7434918/35‑1
                                   GGCTGGGGGGTTTTGTGGATCCACCAGCGAGAATG    <  1:12896502/35‑1
                                    GCTGGGGGGTTTTGTGGATCCACCAGTGAGAATGT   >  1:12737131/1‑35
                                    GCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGT   >  1:8530939/1‑35
                                    GCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGT   <  1:11632022/35‑1
                                    GCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGT   >  1:12798440/1‑35
                                    GCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGT   >  1:20329303/1‑35
                                     CTGGGGGGTTTTGTGGATCCATCAGCGAGAATGTA  >  1:13145248/1‑35
                                     CTGGGGGGTTTTGTGGATCCACCCGCGAGAATGTA  >  1:18909907/1‑35
                                     CTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTA  >  1:12829738/1‑35
                                     CTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTA  <  1:12883888/35‑1
                                     CTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTA  >  1:18029413/1‑35
                                     CTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTA  <  1:18519260/35‑1
                                     CTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTA  <  1:10925614/35‑1
                                     CTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTA  <  1:9085420/35‑1
                                                                        
TGATTCTGCCTGCTCCTGCATGGACTCCGGTAACTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3016865‑3016826
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGGGGGTTTTGTGGATCCACCAGCGAGAATGTA  >  REL606/3882315‑3882346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.