New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 9903115 (1.120)22 (0.220) 8/46 NT 23.0% intergenic (+12/+23) mogA/yaaH molybdenum cofactor biosynthesis protein/conserved inner membrane protein associated with acetate transport
?REL606 = 1095351 37 (0.380)intergenic (‑185/‑238) putA/putP fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase/proline:sodium symporter

CAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/9869‑9903
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTGCCGCAGAGAAAAAGTCTGAGTTATTTTTTTAA  <  REL606/1095351‑1095318
                                                                     
CAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC                                    <  1:1083726/35‑1
CAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC                                    >  1:3703000/1‑35
CAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC                                    >  1:17973559/1‑35
CAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC                                    <  1:17505532/35‑1
CAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC                                    <  1:12422233/35‑1
CAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC                                    <  1:6943112/35‑1
CAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC                                    >  1:17121142/1‑35
CAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC                                    >  1:1679146/1‑35
CAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC                                    <  1:7826596/35‑1
                   tTAAAAAAACCCCCCCTGCCGCAGAGAAAAAGTCT                 <  1:9302933/34‑1
                    aAAAAAAATCCCCCCTGCCGCAGAGAAAAAGTCTG                <  1:14224085/34‑1
                    TAAAAAAATCCCCCCTGCCGCAGAGAAAAAGTCTG                <  1:16382893/35‑1
                     AAAAAACTCCCCCCTGCCGCAGAGAAAAAGTCTGA               <  1:12570803/35‑1
                     AAAAAAATCCCCCCTGCCGCAGAGAAAAAGTCTGA               <  1:6960326/35‑1
                      AAAAAATCCCCCCTGCCGCAGAGAAAAAGTCTGAG              <  1:2641651/35‑1
                      AAAAAACCCCCCCTGCCGCAGAGAAAAAGTCTGAG              <  1:9127101/35‑1
                       AAAAATCCCCCCTGCCGCTGAGAAAAAGTCTGAGT             <  1:20266695/35‑1
                       AAAAATCCCCCCTGCCGCAGAGAAAAAGTCTGAGT             <  1:4792748/35‑1
                       AAAAATCCCCCCTGCCGCAGAGAAAAAGTCTGAGT             <  1:14652739/35‑1
                       AAAAACCCCCCCTGCCGCAGAGAAAAAGTCTGAGT             <  1:11651501/35‑1
                        AAATTCCCCCCTGCCGCAGAGAAAAAGTCTGAGTT            <  1:14431954/35‑1
                        AAAATCCCCCCTGCCGCAGAGAAAAAGTCTGAGTT            <  1:16605153/35‑1
                        AAAATCCCCCCTGCCGCAGAGAAAAAGTCTGAGTT            <  1:5287529/35‑1
                        AAAATCCCCCCTGCCGCAGAGAAAAAGTCTGAGTT            <  1:11470188/35‑1
                        AAAATACCCCCTGCCGCAGAGAAAAAGTCTGAGTT            <  1:17191463/35‑1
                        AAAAGCCCCCCTGCCGCAGAGAAAAAGTCTGAGTT            <  1:7447617/35‑1
                          atcCCCCCCTGCCGCAGAGAAAAAGTCTGAGTTAT          <  1:11628459/32‑1
                          atTCCCCCCTGCCGCAGAGAAAAAGTCTGAGTTAT          <  1:3973074/33‑1
                          aacCCCCCCTGCCGCAGAGAAAAAGTCTGAGTTAT          <  1:13107111/32‑1
                          AATCCCCCCTGCCGCAGAGAAAAAGTCTGAGTTAT          <  1:8486402/35‑1
                           actCCCCCTGCCGCAGAGAAAAAGTCTGAGTTATT         <  1:20125180/32‑1
                           ATCCCCCCTGCCGCAGAGAAAAAGTCTGAGTTATT         <  1:15154420/35‑1
                            tctCCCCTGCCGCAGAGAAAAAGTCTGAGTTATTT        <  1:19161684/32‑1
                            TCCCCCCTGCCGCAGAGAAAAAGTCTGAGTTATTT        <  1:18412769/35‑1
                            TCCCCCCTGCCGCAGAGAAAAAGTCTGAGTTATTT        <  1:12473679/35‑1
                             tCCCCCTGCCGCAGAGAAAAAGTCTGAGTTATTTT       <  1:8427068/34‑1
                             CCCCCCTGCCGCAGAGAAAAAGTCTGAGTTATTTT       <  1:9429627/35‑1
                              CCCCCTGCCGCAGAGAAAAAGTCTGAGTTATTTTT      <  1:1926217/35‑1
                              CCCCCTGCCGCAGAGAAAAAGTCTGAGTTATTTTT      <  1:8023717/35‑1
                              CCCCCTGCCGCAGAGAAAAAGTATGAGTTATTTTT      <  1:18171623/35‑1
                               CCCCTGCCGCAGAGAAAAAGTCTGAGTTATTTTTT     <  1:9307513/35‑1
                               CCCCTGCCGCAGAGAAAAAGTCTGAGTTATTTTTT     <  1:14530699/35‑1
                               CCCCTGCCGCAGAGAAAAAGTCTGAGTTATTTTTT     <  1:19761401/35‑1
                                CCCTGCCGCAGAGAAAAAGTCTGAGTTATTTTTTT    <  1:15307348/35‑1
                                CCCTGCCGCAGAGAAAAAGTCTGAGTTATTTTTTT    <  1:17432365/35‑1
                                 CCTGCCGCAGAGAAAAAGTCTGAGTTATTTTTTTA   <  1:16782255/35‑1
                                 CCTGCCGCAGAGAAAAAGTCTGAGTTATTTTTTTA   <  1:17221644/35‑1
                                 CCTGCCGCAGAGAAAAAGTCTGAGTTATTTTTTTA   <  1:879792/35‑1
                                  CTGCTGCAGAGAAAAAGTCTGAGTTATTTTTTTAA  <  1:5367464/35‑1
                                  CTGCCGCAGAGAAAAAGTCTGAGTTATTTTTTTAA  <  1:16242753/35‑1
                                  CTGCCGCAGAGAAAAAGTCTGAGTTATTTTTTTAA  <  1:6708188/35‑1
                                  CTGCCGCAGAGAAAAAGTCTGAGTTATTTTTTTAA  >  1:11784478/1‑35
                                  CTGCCGCAGAGAAAAAGTCTGAGTTATTTTTTTAA  >  1:9399431/1‑35
                                  CTGCCGAAGAGAAAAAGTCTGAGTTATTTTTTTAA  <  1:4935071/35‑1
                                                                     
CAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/9869‑9903
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTGCCGCAGAGAAAAAGTCTGAGTTATTTTTTTAA  <  REL606/1095351‑1095318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.