New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3894996NA (NA)5 (0.050) 5/46 NT 5.3% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 4415712 90 (0.910)coding (850/1413 nt) cycA D‑alanine/D‑serine/glycine transporter

Only 100 of 146 total aligned reads displayed.

GTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGC  >  REL606/4415678‑4415746
                                  |                                  
gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTttg                                    >  1:6641919/1‑35 (MQ=255)
 tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGt                                   <  1:6506952‑M2/35‑2 (MQ=255)
 tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGt                                   >  1:760567‑M2/1‑34 (MQ=255)
 tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGt                                   >  1:11569198‑M2/1‑34 (MQ=255)
 tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGt                                   >  1:16015047‑M2/1‑34 (MQ=255)
 tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGt                                   <  1:554506‑M2/35‑2 (MQ=255)
  ggAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgtt                                  <  1:2896608/35‑1 (MQ=255)
  ggAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgtt                                  <  1:535449/35‑1 (MQ=255)
  ggAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgtt                                  <  1:1106037/35‑1 (MQ=255)
  ggAGTTCGGTAGTCACGGAGAAAAGCCCGTttgtt                                  <  1:7792592/35‑1 (MQ=255)
   gAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgttg                                 >  1:5918974/1‑35 (MQ=255)
    aGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgta                                >  1:19346761‑M2/1‑31 (MQ=255)
    aGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGa                                >  1:12259460/1‑35 (MQ=255)
     gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGaa                               >  1:9506145/1‑35 (MQ=255)
     gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGaa                               <  1:18560802/35‑1 (MQ=255)
     gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGaa                               >  1:19438570/1‑35 (MQ=255)
      ttCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtact                              >  1:5690821‑M2/1‑29 (MQ=255)
      ttCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtact                              >  1:444259‑M2/1‑29 (MQ=255)
       tCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACt                             <  1:5562285/35‑1 (MQ=255)
       tCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACt                             <  1:13589088/35‑1 (MQ=255)
        cGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTg                            <  1:3286300/35‑1 (MQ=255)
        cGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTg                            <  1:19869694/35‑1 (MQ=255)
        cGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTg                            <  1:19828439/35‑1 (MQ=255)
         ggTAGTCCCTGAGAAAAGCCCGTTTGTTGAACTGt                           >  1:8939744/1‑35 (MQ=255)
         ggTAGTCCCGGAGAAAAGCCCGTTTGtgtactgac                           >  1:2233858‑M2/1‑26 (MQ=255)
         ggTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGt                           >  1:13574637/1‑35 (MQ=255)
         ggTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGt                           <  1:14683937/35‑1 (MQ=255)
         ggTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGt                           <  1:6390609/35‑1 (MQ=255)
          gTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGtt                          <  1:6974723/35‑1 (MQ=255)
           tAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTc                         <  1:5681111/35‑1 (MQ=255)
           tAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTc                         <  1:9762545/35‑1 (MQ=255)
           tAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTc                         <  1:13150990/35‑1 (MQ=255)
           tAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTc                         <  1:15861180/35‑1 (MQ=255)
             gTCCCGGAGAAAAGCCCGTTTGtgtactgacccca                       >  1:1372567‑M2/1‑22 (MQ=255)
              tCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCgtg                      >  1:16190679/1‑35 (MQ=255)
              tCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCgtg                      >  1:4984624/1‑35 (MQ=255)
               cccGGAGAAAAGCCCGTTTGTTGAACTGTTCgtgt                     <  1:867092/35‑1 (MQ=255)
               cccGGAGAAAAGCCCGTTTGTTGAACTGTTCgtgt                     <  1:18760768/35‑1 (MQ=255)
               cccGGAGAAAAGCCCGTTTGTTGAACTGTTCgtgt                     >  1:19085955/1‑35 (MQ=255)
               cccGGAGAAAAGCCCGTTTGTTGAACTGTTCgtgt                     >  1:19512451/1‑35 (MQ=255)
                ccGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGtt                    <  1:11892130/35‑1 (MQ=255)
                ccGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGtt                    >  1:6533648/1‑35 (MQ=255)
                ccGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGtt                    >  1:9390066/1‑35 (MQ=255)
                ccGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGtt                    <  1:19730676/35‑1 (MQ=255)
                 cGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTg                   <  1:399597/35‑1 (MQ=255)
                 cGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTg                   <  1:2764709/35‑1 (MQ=255)
                 cGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTg                   >  1:5658939/1‑35 (MQ=255)
                  ggAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTgg                  <  1:10240283/35‑1 (MQ=255)
                   gagaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGt                 <  1:18598526/35‑1 (MQ=255)
                   gagaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGt                 >  1:11017431/1‑35 (MQ=255)
                   gagaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGt                 <  1:2457357/35‑1 (MQ=255)
                    ctaaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTa                <  1:8169333/33‑1 (MQ=255)
                    agaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTa                >  1:13891463/1‑35 (MQ=255)
                     gaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAg               >  1:5343588/1‑35 (MQ=255)
                     gaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAg               >  1:10631228/1‑35 (MQ=255)
                     gaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAg               <  1:19973946/35‑1 (MQ=255)
                     gaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAg               >  1:20245003/1‑35 (MQ=255)
                     gaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAg               >  1:3619562/1‑35 (MQ=255)
                      aaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTaag              >  1:502015/1‑33 (MQ=255)
                      aaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTAgg              >  1:11219355/1‑35 (MQ=255)
                      aaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTAgg              >  1:12248410/1‑35 (MQ=255)
                      aaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTAgg              >  1:2530240/1‑35 (MQ=255)
                      aaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTAgg              <  1:20059491/35‑1 (MQ=255)
                      aaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTAgg              <  1:16054846/35‑1 (MQ=255)
                       aaaGCCCGTTTGtgtactgaccccaaaaagttgga             >  1:16495139‑M2/1‑12 (MQ=255)
                       aaaGCCCGTTTGTTGAACTGTTCGTGTTGGTAggg             >  1:10217690/1‑35 (MQ=255)
                       aaaGCCCGTTTGTTGAACTGTTCGTGTTGGGAggg             >  1:9460728/1‑35 (MQ=255)
                       aaaGCCCGTTTGTTGAACTGTTCGTGTTGGGAggg             >  1:6548381/1‑35 (MQ=255)
                        aaGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGc            <  1:1316904/35‑1 (MQ=255)
                        aaGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGc            <  1:20353520/35‑1 (MQ=255)
                        aaGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGc            >  1:9124792/1‑35 (MQ=255)
                        aaGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGc            <  1:14100202/35‑1 (MQ=255)
                         aGCCGGTTTGTTGAACTGTTCGTGTTGGTAGGGct           <  1:12222275/35‑1 (MQ=255)
                         aGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGct           <  1:7598167/35‑1 (MQ=255)
                         aGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGct           <  1:4523461/35‑1 (MQ=255)
                         aGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGct           >  1:16781688/1‑35 (MQ=255)
                          gCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctg          >  1:10046671/1‑35 (MQ=255)
                          gCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctg          <  1:15602156/35‑1 (MQ=255)
                          gCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctg          <  1:1913865/35‑1 (MQ=255)
                          gCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctg          >  1:2223899/1‑35 (MQ=255)
                           cccGTTTGTTGAACTGTTCGCGTTGGTAGGGctgc         >  1:7221571/1‑35 (MQ=255)
                            ccGTTTGTTGAACTGTTCGTGTTGGTAGGGctgcc        >  1:137656/1‑35 (MQ=255)
                             cGTTTGTTGAACTGTTCGTGTTGGTAGGGctgcct       >  1:6713835/1‑35 (MQ=255)
                             cGTTTGTTGAACTGTTCGTGTTGGTAGGGctgcct       >  1:17495956/1‑35 (MQ=255)
                             cGTTTGTTGAACTGTTCGTGTTGGTAGGGctgccc       >  1:5858256/1‑34 (MQ=255)
                              gTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctg      <  1:4807875/35‑1 (MQ=255)
                              gTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctg      >  1:15449515/1‑35 (MQ=255)
                              gTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctg      >  1:13946737/1‑35 (MQ=255)
                              gTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctg      <  1:14390381/35‑1 (MQ=255)
                              gTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctg      >  1:14332347/1‑35 (MQ=255)
                               tttGTTGAACTGTTCGTGTTGGTAGGGctgcctgc     <  1:4650796/35‑1 (MQ=255)
                               tttGTTGAACTGTTCGTGTTGGTAGGGctgcctgc     <  1:7593971/35‑1 (MQ=255)
                               tttGTTGAACTGTTCGTGTTGGTAGGGctgcctgc     >  1:8711128/1‑35 (MQ=255)
                                ttgttgAACTGTTCGTGTTGGTAGGGCTGCctgct    >  1:11340011/1‑35 (MQ=255)
                                 tgttgAACTGTTCGTGTTGTTAGGGCTGCctgctg   >  1:3389648/1‑35 (MQ=255)
                                 tgttgAACTGTTCGTGTTGGTAGGGctgcctgccg   >  1:1062705/1‑33 (MQ=255)
                                 tgttgAACTGTTCGTGTTGGTAGGGCTGCctgctg   >  1:15307331/1‑35 (MQ=255)
                                 tgttgAACTGTTCGTGTTGGTAGGGCTGCctgctg   <  1:394687/35‑1 (MQ=255)
                                  gttgAACTGTTCGTGTTGGTAGGGCTGCCtgctgc  <  1:13992518/35‑1 (MQ=255)
                                  gttgAACTGTTCGTGTTGGTAGGGCTGCCtgctgc  >  1:20185177/1‑35 (MQ=255)
                                  |                                  
GTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGC  >  REL606/4415678‑4415746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.