Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 546,191 IS1 (+) +9 bp 100% coding (346‑354/384 nt) ybcQ → predicted antitermination protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 546191 =0 (0.000)77 (0.780) 35/46 NT 100% coding (346/384 nt) ybcQ predicted antitermination protein
?REL606 546932 = NA (NA)noncoding (768/768 nt) IS1 repeat region
* ? REL606 = 5461990 (0.000)125 (1.220) 42/48 NT 100% coding (354/384 nt) ybcQ predicted antitermination protein
?REL606 = 547699 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 318 total aligned reads displayed.

CATAATTGAAGGGATGTTAATGGCATTAGATATCCGGTTAGAGATGGATATCGTTGTTAATAACTCTAA  >  REL606/546157‑546225
                                  |                                  
cataaagcactatcaataagttggagtcattaccc                                    >  1:4825968‑M1/35‑35 (MQ=255)
cataaaacactatcaataagttggattcattaccc                                    <  1:18059994‑M1/1‑1 (MQ=255)
cataaaacactatcaataagttggagtcattaccc                                    <  1:13155318‑M1/1‑1 (MQ=255)
cataaaacactatcaataagttggagtcattaccc                                    >  1:12971504‑M1/35‑35 (MQ=255)
cataaaacactatcaataagttggagtcattaccc                                    <  1:1943077‑M1/1‑1 (MQ=255)
cataaaacactatcaataagttggagtcattaccc                                    <  1:6047906‑M1/1‑1 (MQ=255)
cataaaacactatcaataagttggagtcattaccc                                    >  1:17241158‑M1/35‑35 (MQ=255)
cataaaacactatcaataagttggagtcattaccc                                    <  1:11792484‑M1/1‑1 (MQ=255)
cataaaacactatcaataagttggagtcattaccc                                    >  1:2315682‑M1/35‑35 (MQ=255)
cataaaacactatcaataagttggagtcattaccc                                    >  1:4393588‑M1/35‑35 (MQ=255)
cataaaacactatcaataagttggagtcattaccc                                    <  1:20419602‑M1/1‑1 (MQ=255)
cataaaacactatcaataagttggagtcattaccc                                    <  1:20112014‑M1/1‑1 (MQ=255)
cataaaacactatcaataagttggagtcattaccc                                    <  1:10056404‑M1/1‑1 (MQ=255)
cataaaacactatcaataagttggagtcattaccc                                    >  1:20242203‑M1/35‑35 (MQ=255)
 ataaaacactatcaataagttggagtcattaccCg                                   >  1:13862281‑M1/34‑35 (MQ=255)
  taaaacactatcaataagttggagtcattaccCgg                                  >  1:7823345‑M1/33‑35 (MQ=255)
  tAATTGAAGGGATGTTAATGGCATTAGATATCCgg                                  >  1:3235015/1‑35 (MQ=255)
   aaaacactatcaataagttggagtcattaccCGGt                                 >  1:14201348‑M1/32‑35 (MQ=255)
    aaacactatcaataagttggagtcattaccCGGtt                                >  1:13519835‑M1/31‑35 (MQ=255)
    aTTGAAGGGATGTTAATGGCATTAGATATCCGGtt                                >  1:14787482/1‑35 (MQ=255)
    aTTGAAGGGATGTTAATGGCATTAGATATCCGGtt                                <  1:11992993/35‑1 (MQ=255)
    aTTGAAGGGATGTTAATGGCATTAGATATCCGGtt                                <  1:4264496/35‑1 (MQ=255)
    aTTGAAGGGATGTTAATGGAATTAGATATCCGGtt                                <  1:17070011/35‑1 (MQ=255)
     aacactatcaataagttggagtcattaccCGGTTa                               >  1:17659706‑M1/30‑35 (MQ=255)
     aacactatcaataagttggagtcattaccCGGTTa                               >  1:5781762‑M1/30‑35 (MQ=255)
      acactatcaataagttggagtcattaccCGGTTag                              <  1:8781496‑M1/7‑1 (MQ=255)
       gAAGGGATGTTAATGGCATTAGATATCCGGTTaga                             >  1:17449182/1‑35 (MQ=255)
       cactatcaataagttggagtcattaccCGGTTaga                             >  1:15867910‑M1/28‑35 (MQ=255)
        nctatcaataagttggagtcattaccCGGTTagag                            <  1:15070322‑M1/9‑1 (MQ=255)
        actatcaataagttggagtcattaccCGGTTagag                            >  1:10923229‑M1/27‑35 (MQ=255)
        aaGGGATGTTAATGGCATTAGATATCCGGTTagag                            >  1:2986931/1‑35 (MQ=255)
        aaGGGATGTTAATGGCATTAGATATCCGGTTagag                            <  1:20609277/35‑1 (MQ=255)
         aGGGATGTTAATGGCATTAGATATCCGGTTAGAGg                           >  1:2818694‑M1/1‑34 (MQ=255)
         aGGGATGTTAATGGCATTAGATATCCGGTTAGAGg                           <  1:19500190‑M1/35‑2 (MQ=255)
         aGGGATGTTAATGGCATTAGATATCCGGTTAGAGg                           >  1:9813676‑M1/1‑34 (MQ=255)
         aGGGATGTTAATGGCATTAGATATCCGGTTAGAGg                           <  1:16390059‑M1/35‑2 (MQ=255)
          tatcaataagttggagtcattaccCGGTTAGAGAt                          >  1:2340821‑M1/25‑35 (MQ=255)
          tatcaataagttggagtcattaccCGGTTAGAGAt                          >  1:812012‑M1/25‑35 (MQ=255)
          gggATGTTAATGTCATTAGATATCCGGTTAGAGgg                          >  1:18691228‑M1/1‑33 (MQ=255)
           ggATGTTAATGGCATTAGATATCCGGTTAGAGggt                         <  1:2659742‑M1/35‑4 (MQ=255)
           atcaataagttggagtcattaccCGGTTAGAGATg                         >  1:1366200‑M1/24‑35 (MQ=255)
            gATGTTAATGGCATTAGATATCCGGTTAGAGggtg                        <  1:10861903‑M1/35‑5 (MQ=255)
            gATGTTAATGGCATTAGATATCCGGTTAGAGggtg                        >  1:7253375‑M1/1‑31 (MQ=255)
             caataagttggagtcattaccCGGTTAGAGATGGa                       >  1:16824568‑M1/22‑35 (MQ=255)
             aTGTTAATGGCATTAGATATCCGGTTAGAGggtga                       >  1:8210915‑M1/1‑30 (MQ=255)
               gTTAATGGCATTAGATATCCGGTTAGAGggtgatg                     >  1:9137402‑M1/1‑28 (MQ=255)
               gTTAATGGCATTAGATATCCGGTTAGAGggtgatg                     >  1:17823488‑M1/1‑28 (MQ=255)
                ttAATGGCATTAGATATCCGGTTAGAGggtgatgc                    >  1:8865926‑M1/1‑27 (MQ=255)
                ttAATGGCATTAGATATCCGGTTAGAGggtgatgc                    >  1:16895485‑M1/1‑27 (MQ=255)
                ttAATGGCATTAGATATCCGGTTAGAGggtgatgc                    <  1:14082116‑M1/35‑9 (MQ=255)
                taagttggagtcattaccCGGTTAGAGATGGatat                    <  1:12598689‑M1/17‑1 (MQ=255)
                taagttggagtcattaccCGGTTAGAGATGGatat                    <  1:718105‑M1/17‑1 (MQ=255)
                taagttggagtcattaccCGGTTAGAGATGGatat                    >  1:5645197‑M1/19‑35 (MQ=255)
                taagttggagtcattaccCGGTTAGAGATGGatat                    >  1:11397371‑M1/19‑35 (MQ=255)
                 tAATGGCATTAGATATCCGGTTAGAGggtgatgct                   >  1:3447166‑M1/1‑26 (MQ=255)
                 tAATGGCATTAGATATCCGGTTAGAGggtgatgct                   >  1:15347100‑M1/1‑26 (MQ=255)
                 tAATGGCATTAGATATCCGGTTAGAGggtgatgct                   >  1:16951131‑M1/1‑26 (MQ=255)
                 aagttggagtcattaccCGGTTAGAGATGGATATc                   <  1:8661841‑M1/18‑1 (MQ=255)
                 aagttggagtcattaccCGGTTAGAGATGGATATc                   <  1:19277568‑M1/18‑1 (MQ=255)
                 aagttggagtcattaccCGGTTAGAGATGGATATc                   >  1:18964149‑M1/18‑35 (MQ=255)
                  agttggagtcattaccCGGTTAGAGATGGATATCg                  >  1:16099180‑M1/17‑35 (MQ=255)
                  aaTGGCATTAGATATCCGGTTAGAGggtgatgctg                  >  1:9359063‑M1/1‑25 (MQ=255)
                   gttggagtcattaccCGGTTAGAGATGGATATCgt                 >  1:657186‑M1/16‑35 (MQ=255)
                   aTGGCATTAGATATCCGGTTAGAGggtgatgctgc                 <  1:14464090‑M1/35‑12 (MQ=255)
                   aTGGCATTAGATATCCGGTTAGAGggtgatgctgc                 <  1:7550376‑M1/35‑12 (MQ=255)
                    ttggagtcattaccCGGTTAGAGATGGATATCgtt                >  1:14739441‑M1/15‑35 (MQ=255)
                    ttggagtcattaccCGGTTAGAGATGGATATCgtt                >  1:16145761‑M1/15‑35 (MQ=255)
                    tGGCATTAGATATCCGGTTAGAGggtgatgctgcc                <  1:16594383‑M1/35‑13 (MQ=255)
                     tggagtcattaccCGGTTAGAGATGGATATCgttg               >  1:8367476‑M1/14‑35 (MQ=255)
                     tggagtcattaccCGGTTAGAGATGGATATCgttg               >  1:19756346‑M1/14‑35 (MQ=255)
                     tggagtcattaccCGGTTAGAGATGGATATCgttg               <  1:19813119‑M1/22‑1 (MQ=255)
                      gCATTAGATATCCGGTTAGAGggtgatgctgccaa              <  1:13290230‑M1/35‑15 (MQ=255)
                        aTTAGATATCCGGTTAGAGggtgatgctgccaact            <  1:634518‑M1/35‑17 (MQ=255)
                         ttAGATATCCGGTTAGAGggtgatgctgccaactt           <  1:3943545‑M1/35‑18 (MQ=255)
                         ttAGATATCCGGTTAGAGggtgatgctgccaactt           <  1:4592960‑M1/35‑18 (MQ=255)
                          tcattaccCGGTTAGAGATGGATATCGTTGTtaat          >  1:7057684‑M1/9‑35 (MQ=255)
                          tAGATATCCGGTTAGAGggtgatgctgccaactta          <  1:5372766‑M1/35‑19 (MQ=255)
                           aGATATCCGGTTAGAGggtgatgctgccaacttac         <  1:14027416‑M1/35‑20 (MQ=255)
                           aGATATCCGGTTAGAGggtgatgctgccaacttac         >  1:10028640‑M1/1‑16 (MQ=255)
                           aGATATCCGGTTAGAGggtgatgctgccaacttac         >  1:5264795‑M1/1‑16 (MQ=255)
                            gATATCCGGTTAGAGggtgatgctgccaacttact        >  1:9645306‑M1/1‑15 (MQ=255)
                            gATATCCGGTTAGAGggtgatgctgccaacttact        <  1:18739272‑M1/35‑21 (MQ=255)
                             atatCCGGTTAGAGtgtgatgctgccaacttactg       >  1:9477142‑M1/1‑14 (MQ=255)
                              tatCCGGTTAGAGggtgatgctgcccacttactga      <  1:10256773‑M1/35‑23 (MQ=255)
                              tatCCGGTTAGAGggtgatgctgccaacttactga      <  1:14620458‑M1/35‑23 (MQ=255)
                              tatCCGGTTAGAGggtgatgctgccaacttactga      <  1:4155960‑M1/35‑23 (MQ=255)
                              tatCCGGTTAGAGggtgatgctgccaacttactga      <  1:3189113‑M1/35‑23 (MQ=255)
                              tatCCGGTTAGAGggtgatgctgccaacttactga      <  1:18361601‑M1/35‑23 (MQ=255)
                              tatCAGGTTAGAGggtgatgctgccaacttactga      <  1:7463799‑M1/35‑23 (MQ=255)
                              taccCGGTTAGAGATGGATATCGTTGTTAATAAct      >  1:3717577‑M1/5‑35 (MQ=255)
                               ctcCGGTTAGAGggtgatgctgccaacttactgat     <  1:15544257‑M1/34‑24 (MQ=255)
                                tCCGGTTAGAGggtgatgctgccaacttactgatt    <  1:10716841‑M1/35‑25 (MQ=255)
                                tCCGGTTAGAGggtgatgctgccaacttactgatt    <  1:12763864‑M1/35‑25 (MQ=255)
                                 ccGGTTAGAGggtgatgctgccaacttactgattt   >  1:1582231‑M1/1‑10 (MQ=255)
                                  cGGTTAGAGggtgatgctgccaacttactgattta  >  1:12244170‑M1/1‑9 (MQ=255)
                                  cGGTTAGAGggtgatgctgccaacttactgattta  <  1:4509084‑M1/35‑27 (MQ=255)
                                  cGGTTAGAGggtgatgctgccaacttactgattta  >  1:19944545‑M1/1‑9 (MQ=255)
                                  cGGTTAGAGATGGATATCGTTGTTAATAACTCtaa  <  1:12074632/35‑1 (MQ=255)
                                  cGGTTAGAGATGGATATCGTTGTTAATAACTCtaa  <  1:12478336/35‑1 (MQ=255)
                                  cGGTTAGAGATGGATATCGTTGTTAATAACTCtaa  >  1:17789662/1‑35 (MQ=255)
                                  |                                  
CATAATTGAAGGGATGTTAATGGCATTAGATATCCGGTTAGAGATGGATATCGTTGTTAATAACTCTAA  >  REL606/546157‑546225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.