Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 547,700 | Δ2,651 bp | 100% | IS1‑mediated | [nmpC]–[ybcU] | [nmpC], ybcR, ybcS, ybcT, [ybcU] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 546953–547700 | 550350 | 2651–3398 | 55 [48] | [7] 94 | [insB‑6]–[ybcU] | [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, [ybcU] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 547699 | NA (NA) | 59 (0.570) | 34/48 | NT | 93.7% | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 550351 = | 4 (0.040) | coding (12/294 nt) | ybcU | predicted lipoprotein |
ATACACTAAATCAGTAAGTTGGCAGCATCACCACCGAAACCATCACCATTGGCTTCAGTTACG > REL606/547668‑547730 | atACACTAAATCAGTAAGTTGGCAGCATcaccacg > 1:11365908/1‑34 (MQ=17) atACACTAAATCAGTAAGTTGGCAGCATCaccacc > 1:17445301/1‑35 (MQ=35) cacTAAATCAGTAAGTTGGCAGCATCACCACCGaa > 1:12314564/1‑35 (MQ=38) cAGTAAGTTGGCAGCATCACCACCGAAACCATCAc > 1:10370722/1‑35 (MQ=255) gcaTCACCACCGAAACCATCACCATTGGCTTCAGt > 1:3543552/1‑35 (MQ=255) caacaccGAAACCATCACAATTGGCTTCAGTTACg < 1:12604645/32‑1 (MQ=38) | ATACACTAAATCAGTAAGTTGGCAGCATCACCACCGAAACCATCACCATTGGCTTCAGTTACG > REL606/547668‑547730 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |