New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 201988385 (0.830)18 (0.210) 5/40 NT 23.7% intergenic (‑312/‑115) yeeZ/hisL predicted epimerase, with NAD(P)‑binding Rossmann‑fold domain/his operon leader peptide
?REL606 = 3163334 45 (0.530)coding (1630/2352 nt) ygjK predicted glycosyl hydrolase

Only 100 of 159 total aligned reads displayed.

CGACAAAGAACAGTTGGATAAATATGTCGCTAATGGCGGCAAACGTAGCGACTGGACGGTGAAATTCGC  >  REL606/3163300‑3163368
                                  |                                  
cGACAAAGAACAGTTGGATAAATATGTCGCTAATg                                    >  1:2616935/1‑35 (MQ=255)
cGACAAAGAACAGTTGGATAAATATGTCGCTAATg                                    >  1:12521095/1‑35 (MQ=255)
 gACAAAGAACAGTTTGATAAATATGTCTCTAATgg                                   >  1:2341256/1‑35 (MQ=37)
 gACAAAGAACAGTTGGATAAATATGTCGCTAATGg                                   <  1:16753407‑M2/35‑2 (MQ=255)
 gACAAAGAACAGTTGGATAAATATGTCGCTAATGg                                   <  1:17461153‑M2/35‑2 (MQ=255)
 gACAAAGAACAGTTGGATAAATATGTCGCTAATGg                                   <  1:4415774‑M2/35‑2 (MQ=255)
 gACAAAGAACAGTTGGATAAATATGTCGCTAATGg                                   <  1:4440837‑M2/35‑2 (MQ=255)
 gACAAAGAACAGTTGGATAAATATGTCGCTAATGg                                   <  1:17610270‑M2/35‑2 (MQ=255)
 gACAAAGAACAGTTGGATAAATATGTCGCTAATGg                                   <  1:10983041‑M2/35‑2 (MQ=255)
 gACAAAGAACAGTTGGATAAATATGTCGCTAATGg                                   <  1:19414082‑M2/35‑2 (MQ=255)
 gACAAAGAACAGTTGGATAAATATGTCGCTAATGg                                   >  1:1908858‑M2/1‑34 (MQ=255)
  aCAAAGAACAGTTGGATAAATATGTCGCTAATGgc                                  <  1:5413815‑M2/35‑3 (MQ=255)
   cAAAGAACAGTTGGATAAATATGTCGCTAATGgcg                                 <  1:18125586‑M2/35‑4 (MQ=255)
   cAAAGAACAGTTGGATAAATATGTCGCTAATGgcg                                 <  1:6052453‑M2/35‑4 (MQ=255)
   cAAAGAACAGTTGGATAAATATGTCGCTAATGgcg                                 <  1:20371265‑M2/35‑4 (MQ=255)
   cAAAGAACAGTTGGATAAATATGTCGCTAATGgcg                                 >  1:10522470‑M2/1‑32 (MQ=255)
   cAAAGAACAGTTGGATAAATATGTCGCTAATGgcg                                 <  1:10419128‑M2/35‑4 (MQ=255)
   cAAAGAACAGTTGGATAAATATGTCGCTAATGgcg                                 <  1:17006813‑M2/35‑4 (MQ=255)
    aaaGAACAGTTGGATAAATATGTCGATAATGgcgg                                >  1:2717987‑M2/1‑31 (MQ=255)
      aGAACAGTTGGATAAATATGTCGCTAATGgcgggg                              <  1:18091760‑M2/35‑7 (MQ=255)
      aGAACAGTTGGATAAATATGTCGCTAATGgcgggg                              <  1:15809753‑M2/35‑7 (MQ=255)
      aGAACAGTTGGATAAATATGTCGCTAATGgcgggg                              <  1:2351382‑M2/35‑7 (MQ=255)
      aGAACAGTTGGATAAATATGTCGCTAATGgcgggg                              <  1:4098559‑M2/35‑7 (MQ=255)
      aGAACAGTTGGATAAATATGTCGCTAATGGCGGCa                              <  1:9130098/35‑1 (MQ=255)
      aGAACAGTTGGATAAATATGTCGCTAATGGCGGCa                              <  1:13892249/35‑1 (MQ=255)
      aGAACAGTTGGATAAATATGTCGCTAATGGCGGCa                              <  1:10445579/35‑1 (MQ=255)
      aGAACAGTTGGATAAATATGTCGCTAATGGCGGCa                              <  1:10710261/35‑1 (MQ=255)
      aGAACAGTTGGATAAATATGTCGCTAATGGCGGCa                              <  1:18237720/35‑1 (MQ=255)
       gAACAGTTGGATAAATATGTCGCTAATGgcgggga                             <  1:7197033‑M2/35‑8 (MQ=255)
       gAACAGTTGGATAAATATGTCGCTAATGgcgggga                             <  1:14108780‑M2/35‑8 (MQ=255)
       gAACAGTTGGATAAATATGTCGCTAATGGCGGCaa                             <  1:11871309/35‑1 (MQ=255)
        aaCAGTTGGATAAATATGTCGCTAATGgcggggga                            <  1:14738577‑M2/35‑9 (MQ=255)
        aaCAGTTGGATAAATATGTCGCTAATGGCGGCaaa                            <  1:5082417/35‑1 (MQ=255)
        aaCAGTTGGATAAATATGTCGCTAATGGCGGCaaa                            <  1:12121599/35‑1 (MQ=255)
         aCAGTTTGATAAATATGTCGCTAATGgcggggaac                           <  1:5647528‑M2/35‑10 (MQ=255)
         aCAGTTGGATAAATATGTCGCTAATGgcgggggaa                           <  1:1086139‑M2/35‑10 (MQ=255)
         aCAGTTGGATAAATATGTCGCTAATGgcgggggaa                           <  1:20292850‑M2/35‑10 (MQ=255)
         aCAGTTGGATAAATATGTCGCTAATGgcgggggaa                           <  1:4611032‑M2/35‑10 (MQ=255)
         aCAGTTGGATAAATATGTCGCTAATGgcggggaaa                           <  1:9447217‑M2/35‑10 (MQ=255)
         aCAGTTGGATAAATATGTCGCTAATGgcggggaaa                           <  1:13176827‑M2/35‑10 (MQ=255)
         aCAGTTGGATAAATATGTCGCTAATGgcggggaaa                           <  1:16662287‑M2/35‑10 (MQ=255)
         aCAGTTGGATAAATATGTCGCTAATGGCGGCAAAc                           <  1:1129870/35‑1 (MQ=255)
         aCAGTTGGATAAATATGTCGCTAATGGCGGCAAAc                           <  1:8241033/35‑1 (MQ=255)
         aCAGTTGGATAAATATGTCGCTAATGGCGGCAAAc                           <  1:17675947/35‑1 (MQ=255)
         aCAGTTGGATAAATATGTCGCTAATGGCGGCAAAc                           <  1:7901079/35‑1 (MQ=255)
          cAGTTGTATAAATATGTCGCTAATGgcggggaaag                          <  1:6898178‑M2/35‑11 (MQ=255)
          cAGTTGGATAAATATGTCGCTAATGgcggggaaag                          <  1:6179572‑M2/35‑11 (MQ=255)
          cAGTTGGATAAATATGTCGCTAATGgcggggaaag                          <  1:7076052‑M2/35‑11 (MQ=255)
          cAGTTGGATAAATATGTCGCTAATGGCGGCAAACg                          <  1:17903398/35‑1 (MQ=255)
          cAGTTGGATAAATATGTCGCTAATCGCGGCAAACg                          >  1:6818683/1‑35 (MQ=255)
           aGTTGGATAAATATGTCGCTAATGgcgggggaagg                         <  1:13006010‑M2/35‑12 (MQ=255)
           aGTTGGATAAATATGTCGCTAATGgcgggggaagc                         <  1:15594047‑M2/35‑12 (MQ=255)
           aGTTGGATAAATATGTCGCTAATGgcggggcaaga                         <  1:14466506‑M2/35‑12 (MQ=255)
           aGTTGGATAAATATGTCGCTAATGgcggggaacgg                         <  1:6474337‑M2/35‑12 (MQ=255)
           aGTTGGATAAATATGTCGCTAATGgcggggaaagg                         <  1:896361‑M2/35‑12 (MQ=255)
           aGTTGGATAAATATGTCGCTAATGgcggggaaagg                         <  1:3990170‑M2/35‑12 (MQ=255)
           aGTTGGATAAATATGTCGCTAATGgcggggaaagg                         <  1:3179300‑M2/35‑12 (MQ=255)
           aGTTGGATAAATATGTCGCTAATGgcggggaaaac                         <  1:10523507‑M2/35‑12 (MQ=255)
           aGTTGGATAAATATGTCGCTAATGGCAGCAAACGt                         <  1:1407500/35‑1 (MQ=255)
            gTTGGATAAATATGTCGCTAATGGCGGCAAACGTa                        <  1:10035588/35‑1 (MQ=255)
             ttGGATAAATATGTCGCTAATGgcggggaaagaag                       <  1:14248138‑M2/35‑14 (MQ=255)
             ttGGATAAATATGTCGCTAATGgcggggaaagaag                       <  1:11308081‑M2/35‑14 (MQ=255)
              tGGATAAATATGTCGCTAATGgcggggaaagaagg                      <  1:6544524‑M2/35‑15 (MQ=255)
              tGGATAAATATGTCGCTAATGGCGGCAAACGTAGc                      <  1:5821841/35‑1 (MQ=255)
              tGGATAAATATGTCGCTAATGGCGGCAAACGTAGc                      <  1:10203456/35‑1 (MQ=255)
               ggATAAATATGTCGCTAATGgcggggaaaggaggg                     <  1:6876927‑M2/35‑16 (MQ=255)
                gATAAATATGTCGCTAATGGCGGCAAACGTAGCGa                    <  1:15088046/35‑1 (MQ=255)
                gATAAATATGTCGCTAATGGCGGCAAACGTAGCGa                    <  1:18047790/35‑1 (MQ=255)
                 aTAAATATGTCGCTAATGgcggggaaaggaggggg                   <  1:5701223‑M2/35‑18 (MQ=255)
                 aTAAATATGTCGCTAATGgcggggaaaggagggga                   <  1:18046928‑M2/35‑18 (MQ=255)
                 aTAAATATGTCGCTAATGgcggggaaaggagggac                   <  1:7441400‑M2/35‑18 (MQ=255)
                 aTAAATATGTCGCTAATGGCGGCAAACGTAGCGAc                   <  1:17616855/35‑1 (MQ=255)
                 aTAAATATGTCGCTAATGGCGGCAAACGTAGCGAc                   <  1:13060473/35‑1 (MQ=255)
                 aTAAATAGGTCGCTAATGGCGGCAAACGTAGCGAc                   <  1:20400653/35‑1 (MQ=255)
                  tAAATATGTCGCTAATGGCGGGGAACGCAGAGACt                  >  1:9164557/1‑35 (MQ=16)
                  tAAATATGTCGCTAATGGCGGCAAACGTAGCGACt                  <  1:19620627/35‑1 (MQ=255)
                   aaaTATGTCGCTAATGGCGGGGAAAGGAGCGAGTg                 >  1:19852321/1‑35 (MQ=12)
                   aaaTATGTCGCTAATGGCGGCAAACGTAGCGACTg                 <  1:15718709/35‑1 (MQ=255)
                   aaaTATGTCGCTAATGGCGGCAAACGTAGCGACTg                 <  1:4218796/35‑1 (MQ=255)
                   aaaTATGTCGCTAATGGCGGCAAACGTAGCGACTg                 <  1:20144432/35‑1 (MQ=255)
                    aaTATGTCGCTAATGGCGGCAAACGTAGCGACTgg                <  1:5406387/35‑1 (MQ=255)
                     atatGTCGCTAATGGCGGCAAACGTAGCGACTGGa               <  1:8741535/35‑1 (MQ=255)
                       atGTCGCTAATGGCGGCAAACGTAGCGACTGGACg             <  1:13980205/35‑1 (MQ=255)
                       atGTCGCTAATGGCGGCAAACGTAGCGACTGGACg             <  1:13434382/35‑1 (MQ=255)
                        tGTCGCTAATGGCGGCAAACGTAGCGACTGGACgg            <  1:4027200/35‑1 (MQ=255)
                         gTCGCTAATGGCGGCAAACGTAGCGACTGGACGGt           <  1:17550984/35‑1 (MQ=255)
                          tCGCTAATGGCGGCAAACGTAGCGACTGGACGGTg          <  1:8186585/35‑1 (MQ=255)
                          tCGCTAATGGCGGCAAACGTAGCGACTGGACGGTg          <  1:12442535/35‑1 (MQ=255)
                           cGCTAATGGCGGCAAACGTAGCGACTGGACGGTGa         <  1:15427770/35‑1 (MQ=255)
                           cGCTAATGGCGGCAAACGTAGCGACTGGACGGTGa         <  1:8032197/35‑1 (MQ=255)
                             cTAATGGCGGCAAACGTAGCGACTGGACGGTGaaa       <  1:12208692/35‑1 (MQ=255)
                              tAATGGCGGCAAACGTAGCGACTGGACGGTGAAAt      <  1:1132947/35‑1 (MQ=255)
                              tAATGGCGGCAAACGTAGCGACTGGACGGTGAAAt      <  1:11698290/35‑1 (MQ=255)
                               gaTGGCGGCAAACGTAGCGACTGGACGGTGAAAtt     <  1:4223515/34‑1 (MQ=255)
                               aaTGGCGGCAAACGTAGCGACTGGACGGTGAAAtt     <  1:8585615/35‑1 (MQ=255)
                                aTGGCGGCAAACGTAGCGACTGGACGGTGAAATTc    <  1:12155097/35‑1 (MQ=255)
                                 tGGCGGCAAACGTAGCGACTGGACGGTGAAATTCg   <  1:5158948/35‑1 (MQ=255)
                                 tGGCGGCAAACGTAGCGACTGGACGGTGAAATTCg   <  1:13735614/35‑1 (MQ=255)
                                 tGGCGGCAAACGTAGCGACTGGACGGGGAAATTCg   >  1:18689788/1‑35 (MQ=255)
                                  ggcggcAAACGTAGCGACTGGACGGTGAAATTCGc  <  1:17741987/35‑1 (MQ=255)
                                  |                                  
CGACAAAGAACAGTTGGATAAATATGTCGCTAATGGCGGCAAACGTAGCGACTGGACGGTGAAATTCGC  >  REL606/3163300‑3163368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.