New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1199795 = | 69 (0.670) | 4 (0.060) | 3/30 | NT | 7.4% | coding (20/828 nt) | potB | spermidine/putrescine ABC transporter membrane protein |
? | REL606 | = 3283512 | 57 (0.890) | intergenic (+39/‑175) | ptsO/yrbL | phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr)/hypothetical protein |
Only 100 of 161 total aligned reads displayed.
CAGGTTGGGCAGAAAGACAAACAACACAAGCCAACCGACAATAGTGACAATCACTACATTCTGGAACTT > REL606/1199761‑1199829 | atcactttgacatacaactcccttcaaactccccc < 1:15300364‑M1/1‑1 (MQ=255) atcactttgacatacaactcccttcaaactccccc > 1:20570389‑M1/35‑35 (MQ=255) agcactttgacatacaactcccttcaaactccccc > 1:11608897‑M1/35‑35 (MQ=255) tcactttgacatacaactcccttcaaactcccccc < 1:10316035‑M1/2‑1 (MQ=255) tcactttgacatacaactcccttcaaactcccccc < 1:18540439‑M1/2‑1 (MQ=255) aGGTTGGGCAGAAAGACAAACAACACAATCCAAcc > 1:8248214/1‑35 (MQ=255) aGGTTGGGCAGAAAGACAAACAACACAAGCCAAcc < 1:13500349/35‑1 (MQ=255) aGGTTGGGCAGAAAGACAAACAACACAAGCCAAcc > 1:10505037/1‑35 (MQ=255) aGGTTGGGCAGAAAGACAAACAACACAAGCCAAcc > 1:3501867/1‑35 (MQ=255) ggTTGGGCAGAAAGACAAACAACACAAGCCAACCg < 1:14417119/35‑1 (MQ=255) ggTTGGGCAGAAAGACAAACAACACAAGCCAACCg > 1:16354471/1‑35 (MQ=255) ggTTGGGCAGAAAGACAAACAACACAAGCCAACCg > 1:19103973/1‑35 (MQ=255) ggTTGGGCAGAAAGACAAACAACACAAGCCAACCg > 1:5231465/1‑35 (MQ=255) cactttgacatacaactcccttcaaactccccCCg > 1:12869415‑M1/33‑35 (MQ=255) cactttgacatacaactcccttcaaactccccCCg < 1:5457204‑M1/3‑1 (MQ=255) gTTGGGCAGAAAGACAAACAACACAAGCCAACCGa > 1:19282123/1‑35 (MQ=255) gTTGGGCAGAAAGACAAACAACACAAGCCAACCGa > 1:11039282/1‑35 (MQ=255) gTTGGGCAGAAAGACAAACAACACAAGCCAACCGa > 1:12160364/1‑35 (MQ=255) gTTGGGCAGAAAGACAAACAACACAAGCCAACCGa > 1:7294604/1‑35 (MQ=255) actttgacatacaactcccttcaaactccccCCGa < 1:18334360‑M1/4‑1 (MQ=255) actttgacatacaactcccttcaaactccccCCGa > 1:17734722‑M1/32‑35 (MQ=255) ttGGGCATAAAGACAAACAACACAAGCCAACCGAc > 1:19373516/1‑35 (MQ=255) ctttgacatacaactcccttcaaactcctcCCGAc < 1:986674‑M1/5‑1 (MQ=255) ctttgacatacaactcccttcaaactccccCCGAc < 1:2490102‑M1/5‑1 (MQ=255) tttgacatacaactcccttcaaactccccCCGACa < 1:9748028‑M1/6‑1 (MQ=255) tttgacatacaactcccttcaaactccccCCGACa > 1:15891616‑M1/30‑35 (MQ=255) tttgacatacaactcccttcaaactccccCCGACa > 1:16369798‑M1/30‑35 (MQ=255) tGGGCAGAAAGACAAACAACACAAGCCAACCGACa > 1:18921002/1‑35 (MQ=255) ttgacatacaactcccttcaaactccccCCGACaa > 1:14140842‑M1/29‑35 (MQ=255) ttgacatacaactcccttcaaactccccCCGACaa > 1:9072429‑M1/29‑35 (MQ=255) ttgacatacaactcccttcaaactccccCCGACaa < 1:6827372‑M1/7‑1 (MQ=255) ttgacatacaactcccttcaaactccccCCGACaa < 1:4016460‑M1/7‑1 (MQ=255) ttgacatacaactcccttcaaactccccCCGACaa > 1:18104756‑M1/29‑35 (MQ=255) ttgacatacaactcccttcaaactccccCCGACaa < 1:13099873‑M1/7‑1 (MQ=255) gggCAGAAAGACAAACAACACAAGCCAACCGACaa > 1:20559374/1‑35 (MQ=255) gggCAGAAAGACAAACAACACAAGCCAACCGACaa > 1:17386825/1‑35 (MQ=255) tgacatacaactcccttcaaactccccCCGACAAt < 1:4501734‑M1/8‑1 (MQ=255) ggCAGAAAGACAAACAACACAAGCCAACCGACAAt > 1:20328654/1‑35 (MQ=255) ggCAGAAAGACAAACAACACAAGCCAACCGACAAt > 1:3330657/1‑35 (MQ=255) ggCAGAAAGACAAACAACACAAGCCAACCGACAAt > 1:1460199/1‑35 (MQ=255) gacatacaactcccttcaaactccccCCGACAATa < 1:1154976‑M1/9‑1 (MQ=255) gCAGAAATACAAACAACACAAGCCAACCGACAATa > 1:3484064/1‑35 (MQ=255) gCAGAAAGACAAACAACACAAGCCAACCGACAATa > 1:18018347/1‑35 (MQ=255) gCAGAAAGACAAACAACACAAGCCAACCGACAATa > 1:6626783/1‑35 (MQ=255) cAGAAAGACAAACAACACAAGCCAACCGACAATAg > 1:17817271/1‑35 (MQ=255) cAGAAAGACAAACAACACAAGCCAACCGACAATAg > 1:13466445/1‑35 (MQ=255) aGAAAGACAAACAACACAAGCCAACCGACAATAGt > 1:11861418/1‑35 (MQ=255) aGAAAGACAAACAACACAAGCCAACCGACAATAGt > 1:9152055/1‑35 (MQ=255) aGAAAGACAAACAACACAAGCCAACCGACAATAGt > 1:12312270/1‑35 (MQ=255) aGAAAGACAAACAACACAAGCCAACCGACAATAGt > 1:18466646/1‑35 (MQ=255) aaaGACAAACAACACAAGCCAACCGACAATAGTGa > 1:5601488/1‑35 (MQ=255) aaaGACAAACAACACAAGCCAACCGACAATAGTGa > 1:17026579/1‑35 (MQ=255) aaGACAAACAACACAAGCCAACCGACAATAGTGAc > 1:606012/1‑35 (MQ=255) aaGACAAACAACACAAGCCAACCGACAATAGTGAc > 1:10704599/1‑35 (MQ=255) gACAAACAACACAAGCCAACCGACAATAGTGACaa > 1:9351657/1‑35 (MQ=255) acaaacaaCACAAGCCAACCGACAATAGTGACAAt > 1:16697887/1‑35 (MQ=255) acaaacaaCACAAGCCAACCGACAATAGTGACAAt > 1:14925678/1‑35 (MQ=255) acaaacaaCACAAGCCAACCGACAATAGTGACAAt > 1:19669655/1‑35 (MQ=255) acaaacaaCACAAGCCAACCGACAATAGTGACAAt > 1:10250110/1‑35 (MQ=255) caaacaaCACAAGCCAACCGACAATAGTGACAATc > 1:6373581/1‑35 (MQ=255) caaacaaCACAAGCCAACCGACAATAGTGACAATc > 1:1115567/1‑35 (MQ=255) caaacaaCACAAGCCAACCGACAATAGTGACAATc > 1:1934285/1‑35 (MQ=255) aaacaaCACAAGCCAACCGACAATAGTGACAATCa > 1:15619986/1‑35 (MQ=255) aaacaaCACAAGCCAACCGACAATAGTGACAATCa > 1:14265644/1‑35 (MQ=255) aaacaaCACAAGCCAACCGACAATAGTGACAATCa > 1:2929642/1‑35 (MQ=255) aacaacACAAGCCAACCGACAATAGTGACAATCAc > 1:3812392/1‑35 (MQ=255) acaacaCAAGCCAACCGACAATAGTGACAATCACt > 1:3345848/1‑35 (MQ=255) acaacaCAAGCCAACCGACAATAGTGACAATCACt > 1:10064513/1‑35 (MQ=255) caacaCAAGCCAACCGACAATAGTGACAATCACTa > 1:8166092/1‑35 (MQ=255) caacaCAAGCCAACCGACAATAGTGACAATCACTa > 1:17189700/1‑35 (MQ=255) nacacAAGCCAACCGACAATAGTGACAATCACTAc > 1:13840071/2‑35 (MQ=255) aacaCAAGCCAACCGACAATAGTGACAATCACTAc > 1:6375249/1‑35 (MQ=255) acacAAGCCAACCGACAATAGTGACAATCACTACa > 1:16404412/1‑35 (MQ=255) acacAAGCCAACCGACAATAGTGACAATCACTACa > 1:14504442/1‑35 (MQ=255) cacaAGCCAACCGACAATAGTGACAATCACTACAt > 1:14877043/1‑35 (MQ=255) caaccccccCCGACAATAGTGACAATCACTACAtt > 1:7447060‑M1/10‑35 (MQ=255) aaccccccCCGACAATAGTGACAATCACTACATTc > 1:786345‑M1/9‑35 (MQ=255) cccccccCCGACAATAGTGACAATCACTACATTCt > 1:10082290‑M1/8‑35 (MQ=255) accccccCCGACAATAGTGACAATCACTACATTCt > 1:15157728‑M1/8‑35 (MQ=255) aaGCCAACCGACAATAGTGACAATCACTACATTCt > 1:17338606/1‑35 (MQ=255) aaGCCAACCGACAATAGTGACAATCACTACATTCt > 1:19534359/1‑35 (MQ=255) aGCCAACCGACAATAGTGACAATCACTACATTCTg > 1:17222618/1‑35 (MQ=255) gCCAACCGACAATAGTGACAATCACTACATTCTgg > 1:4501616/1‑35 (MQ=255) cccccCCGACAATAGTGACAATCACTACATTCTgg > 1:9126804‑M1/6‑35 (MQ=255) ccccCCGACAATAGTGACAATCACTACATTCTGGa > 1:5797897‑M1/5‑35 (MQ=255) ccccCCGACAATAGTGACAATCACTACATTCTGGa > 1:4088878‑M1/5‑35 (MQ=255) ccAACCGACAATAGTGACAATCACTACATTCTGGa > 1:6022047/1‑35 (MQ=255) ccAACCGACAATAGTGACAATCACTACATTCTGGa > 1:15335032/1‑35 (MQ=255) cccCCGACAATAGTGACAATCACTACATTCTGGaa > 1:11897271‑M1/4‑35 (MQ=255) cAACCGACAATAGTGACAATCACTACATTCTGGaa > 1:7419071/1‑35 (MQ=255) cAACCGACAATAGTGACAATCACTACATTCTGGaa > 1:13343488/1‑35 (MQ=255) cAACCGACAATAGTGACAATCACTACATTCTAGaa > 1:17818208/1‑35 (MQ=255) cAACCGACAATAGTGAC‑ATCACTACATTCTGGAac > 1:2559451/1‑35 (MQ=38) ccCCGACAATAGGGACAATCACTACATTCTGGAac > 1:10951581‑M1/3‑35 (MQ=255) aaCCGACAATAGTGACAATCACTACATTCTGGAac > 1:10855488/1‑35 (MQ=255) aaCCGACAATAGTGACAATCACTACATTCTGGAac > 1:237818/1‑35 (MQ=255) cCCGACAATAGTGACAATCACTACATTCTGGAact > 1:3275219‑M1/2‑35 (MQ=255) aCCGACAATAGTGACAATCACTACATTCTGGAact > 1:16695674/1‑35 (MQ=255) CCGACAATAGTGACAATCACTACATTCTGGAactt > 1:2734520‑M1/1‑35 (MQ=255) CCGACAATAGTGACAATCACTACATTCTGGAactt > 1:12128564‑M1/1‑35 (MQ=255) | CAGGTTGGGCAGAAAGACAAACAACACAAGCCAACCGACAATAGTGACAATCACTACATTCTGGAACTT > REL606/1199761‑1199829 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |