New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1157306 =35 (0.340)4 (0.050) 4/38 NT 11.3% coding (1631/3186 nt) rne fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein
?REL606 = 1452435 35 (0.430)intergenic (‑244/‑14) acpD/hrpA acyl carrier protein phosphodiesterase/ATP‑dependent helicase

AGGTGCTGGGGCTACGACAGGCGCGGCAGGTTCAGCTGGGGTTGGCGCTGGCGGCACATCCGGCATGGC  >  REL606/1157272‑1157340
                                  |                                  
aacaaaaattgacctttacggccttgcagcagcgg                                    >  1:19163935‑M1/35‑35 (MQ=255)
aacaaaaattgacctttacggccttgcagcagcgg                                    <  1:18406681‑M1/1‑1 (MQ=255)
aacaaaaattgacctttacggccttgcagcagcgg                                    <  1:11566845‑M1/1‑1 (MQ=255)
aacaaaaattgacctttacggccttgcagcagcgg                                    >  1:5939704‑M1/35‑35 (MQ=255)
aacaaaaattgacctttacggccttgcagcagcgg                                    <  1:7121499‑M1/1‑1 (MQ=255)
aacaaaaattgacctttacggccttgcagaagcgg                                    <  1:6379086‑M1/1‑1 (MQ=255)
aGGTGCTGGGGCTACGACAGGCGCGGCAGGTTCAg                                    <  1:18940687/35‑1 (MQ=255)
aGGTGCTGGGGCTACGACAGGCGCGGCAGGTTCAg                                    <  1:18322092/35‑1 (MQ=255)
aGGTGCGGGGGCTACGACAGGCGCGGCAGGTTCAg                                    <  1:2642546/35‑1 (MQ=255)
 ggTGCTGGGGCTACGACAGGCGCGGCAGGTTCAGc                                   <  1:8556472/35‑1 (MQ=255)
 ggTGCTGGGGCTACGACAGGCGCGGCAGGTTCAGc                                   <  1:20091637/35‑1 (MQ=255)
 ggTGCTGGGGCTACGACAGGCGCGGCAGGTTCAGc                                   <  1:14050940/35‑1 (MQ=255)
 acaaaaattgacctttacggccttgcagcagcggg                                   <  1:15746550‑M1/2‑2 (MQ=255)
 acaaaaattgacctttacggccttgcagcagcgGc                                   >  1:1735460‑M1/34‑35 (MQ=255)
 acaaaaattgacctttacggccttgcagcagcgGc                                   <  1:11480904‑M1/2‑1 (MQ=255)
  gTGCTGGGGCTACGACAGGCGCGGCAGGTTCAGCt                                  <  1:670827/35‑1 (MQ=255)
  gTGCTGGGGCTACGACAGGCGCGGCAGGTTCAGCt                                  <  1:1544795/35‑1 (MQ=255)
  gTGCTGGGGCTACGACAGGCGCGGCAGGTTCAGCt                                  <  1:7454198/35‑1 (MQ=255)
  gTGCTGGGGCTACGACAGGCGCGGCAGGTTCAGCt                                  <  1:5888387/35‑1 (MQ=255)
  caaaaattgacctttacggccttgcagcagcgGCt                                  >  1:6516239‑M1/33‑35 (MQ=255)
   tGCTGGGGCTACGACAGGCGCGGCAGGTTCAGCTg                                 <  1:3369890/35‑1 (MQ=255)
   aaaaattgacctttacggccttgcagcagcgggtg                                 <  1:3891892‑M1/4‑4 (MQ=255)
   aaaaattgacctttacggccttgcagcagcgGCTg                                 >  1:18472557‑M1/32‑35 (MQ=255)
    gCTGGGCCTACGACAGGCGCGGCAGGTTCAGCTgg                                <  1:3271450/35‑1 (MQ=255)
    aaaattgacctttacggccttgcagcagcgGCTgg                                <  1:8519525‑M1/5‑1 (MQ=255)
    aaaattgacctttacggccttgcagcagcgGCTgg                                <  1:3459593‑M1/5‑1 (MQ=255)
    aaaattgacctttacggccttgcagcagcgGCTgg                                <  1:5563369‑M1/5‑1 (MQ=255)
    aaaattgacctttaaggccttgcagcagcgGCTgg                                >  1:3542467‑M1/31‑35 (MQ=255)
     aaattgacctttacggccttgcagcagcgGCTggg                               <  1:20085705‑M1/6‑1 (MQ=255)
     aaattgacctttacggccttgcagcagcgGCTggg                               <  1:10837843‑M1/6‑1 (MQ=255)
      tGGGGCTACGACAGGCGCGGCAGGTTCAGCTgggg                              <  1:5535510/35‑1 (MQ=255)
      tGGGGCTACGACAGGCGCGGCAGGTTCAGCTgggg                              <  1:17002341/35‑1 (MQ=255)
      tGGGGCTACGACAGGCGCGGCAGGTTCAGCTgggg                              <  1:10443377/35‑1 (MQ=255)
      aattgacctttacggccttgcagcagcgGCTgggg                              <  1:8571796‑M1/7‑1 (MQ=255)
      aattgacctttacggccttgcagcagcgGCTgggg                              <  1:11749525‑M1/7‑1 (MQ=255)
       ggggCTACGACAGGCGCGGCAGGTTCAGCTGGGGt                             <  1:615354/35‑1 (MQ=255)
       attgacctttacggccttgcagcagcgGCtggggg                             <  1:14297942‑M1/8‑2 (MQ=255)
       attgacctttacggccttgcagcagcgGCTGGGGt                             <  1:12833508‑M1/8‑1 (MQ=255)
       attgacctttacggccttgcagcagcgGCTGGGGt                             <  1:2050457‑M1/8‑1 (MQ=255)
       attgacctttacggccttgcagcagcgGCTGGGGt                             <  1:7036638‑M1/8‑1 (MQ=255)
        ttgacctttacggccttgcagcagcggctgggttc                            <  1:6950465‑M1/9‑4 (MQ=255)
        ttgacctttacggccttgcagcagcgGCTGGGGtt                            <  1:20529202‑M1/9‑1 (MQ=255)
        ttgacctttacggccttgcagcagcgGCTGGGGtt                            <  1:14829150‑M1/9‑1 (MQ=255)
        ttgacctttacggccttgcagcagcgGCTGGGGtt                            <  1:11632577‑M1/9‑1 (MQ=255)
        gggCTACGACAGGCGCGGCAGGTTCAGCTGGGGtt                            <  1:17973785/35‑1 (MQ=255)
        gggCTACAACAGGCGCGGCAGGTTCAGCTGGGGtt                            <  1:3866165/35‑1 (MQ=255)
        agccTACGACAGTCGCGGCAGGTTCAGCTGGGGtt                            <  1:9852325/32‑1 (MQ=37)
         ggCTACGACAGGCGCGGCAGGTTCAGCTGGGGTTg                           <  1:6247403/35‑1 (MQ=255)
         ggCTACGACAGGCGCGGCAGGTTCAGCTGGGGTTg                           <  1:18786396/35‑1 (MQ=255)
         ggCTACGACAGGCGCGGCAGGTTCAGCTGGGGTTg                           <  1:11120107/35‑1 (MQ=255)
          gCTACGACAGGCGCGGCAGGTTCAGCTGGGGTTgg                          <  1:1617986/35‑1 (MQ=255)
          gCTACGACAGGCGCGGCAGGTTCAGCTGGGGTTgg                          <  1:7015984/35‑1 (MQ=255)
           cTACGACAGGCGCGGCAGGTTCAGCTGGGGTTGgc                         <  1:3163244/35‑1 (MQ=255)
           cTACGACAGGCGCGGCAGGTTCAGCTGGGGTTGgc                         <  1:6560250/35‑1 (MQ=255)
           cTACGACAGGCGCGGCAGGTTCAGCTGGGGTTGgc                         <  1:11900590/35‑1 (MQ=255)
            tACGACAGGCGCGGCAGGTTCAGCTGGGGTTGgcg                        <  1:4377072/35‑1 (MQ=255)
            tACGACAGGCGCGGCAGGTTCAGCTGGGGTTGgcg                        <  1:294737/35‑1 (MQ=255)
            cctttacggccttgcagcagcgGCTGGGgttgctg                        <  1:9022777‑M1/13‑4 (MQ=255)
            cctttacggccttgcagcagcgGCTGGGGTTGgcg                        <  1:5710349‑M1/13‑1 (MQ=255)
             aCGACAGGCGCGGCAGGTTCAGCTGGGGTTGgcgc                       <  1:14080898/35‑1 (MQ=255)
              cGACAGGCGCGGCAGGTTCAGCTGGGGTTGGCGCt                      <  1:13625938/35‑1 (MQ=255)
               ttacggccttgcagcagcgGCTGGGGGTGGCGCTg                     <  1:8612109‑M1/16‑1 (MQ=255)
                tacggccttgcagcagcgGCTGGGGTTGGCGGTgg                    <  1:1348160‑M1/17‑1 (MQ=255)
                ccAGGCGCGGCAGGTTCAGCTGGGGTTGGCGCTgg                    <  1:3265697/34‑1 (MQ=255)
                aCAGGCGCGGCAGGTTCAGCTGGGGTTGGCGCTgg                    <  1:18238390/35‑1 (MQ=255)
                 cAGGCGCGGCAGGTTCAGCTGGGGTTGGCGCTggc                   <  1:4122159/35‑1 (MQ=255)
                 acggccttgcagcagcgGCTGGGGTTGGCGGTggc                   <  1:19635032‑M1/18‑1 (MQ=255)
                  aGGCGCGGCAGGTTCAGCTGGGGTTGGCGCTggcg                  <  1:10085926/35‑1 (MQ=255)
                  aGGCGCGGCAGGTTCAGCTGGGGTTGGCGCTggcg                  <  1:13653344/35‑1 (MQ=255)
                    gcgcGGCAGTTTCAGCTGGGGTTGGCGCTggcggc                <  1:9306934/35‑1 (MQ=255)
                    gcgcGGCAGGTTCAGCTGGGGTTGGCGCTggcggc                <  1:18989593/35‑1 (MQ=255)
                    gcgcGGCAGGGTCAGCTGGGGGTGGGGCTggcggg                >  1:8942687/1‑34 (MQ=21)
                       cgGCAGGTTCAGCTGGGGTTGGCGCTGGCGGcaca             <  1:3474991/35‑1 (MQ=255)
                        ggCAGGTTCAGCTGGGGTTGGCGCTGGCGGCACAt            <  1:8267030/35‑1 (MQ=255)
                         gCAGGTTCAGCTGGGGTTGGCGCTGGCGGCACATc           <  1:3401160/35‑1 (MQ=255)
                          cAGGTTCAGCTGGGGTTGGCGCTGGCGGCACATcc          >  1:6390600/1‑35 (MQ=255)
                          cAGGTTCAGCTGGGGTTGGCGCTGGCGGCACATcc          >  1:17319306/1‑35 (MQ=255)
                          cAGGTTCAGCTGGGGTTGGCGCTGGCGGCACATcc          <  1:3502848/35‑1 (MQ=255)
                            ggTTCAGCTGGGGTTGGCGCTGGCGGGACATcccg        >  1:357590/1‑33 (MQ=37)
                            ggTTCAGCTGGGGTTGGCGCTGGCGGGACAAcccg        >  1:10842132/1‑33 (MQ=25)
                             gTTCAGCTGGGGTTGGCGCTGGCGGGACATccccc       >  1:4211067/1‑32 (MQ=25)
                             gTTCAGCTGGGGTTGGCGCTGGCGGCACATACGGc       <  1:16587446/35‑1 (MQ=255)
                              ttCAGCTGGGGTTGGCGCTGGCGGGCCCTCCGGCa      >  1:19984405/1‑35 (MQ=21)
                              ttCAGCTGGGGTTGGCGCTGGCGGGACCACCggga      >  1:3877526/1‑33 (MQ=18)
                                cAGCTGGGGTTGGCGCTGGCGGGCCAACCGGCAtc    >  1:14928658/1‑34 (MQ=18)
                                cAGCGGGGGTTGGCGCTGGCGGCACATCCGGCATg    <  1:6341764/35‑1 (MQ=255)
                                 aGCGGGGGTTGGCGCTGGCGGCACATCCGGCATgg   <  1:17926323/35‑1 (MQ=255)
                                  GCTGGGGTTGGCGCTGGCGGCACATCCGGCATGGc  >  1:12496766‑M1/1‑35 (MQ=255)
                                  |                                  
AGGTGCTGGGGCTACGACAGGCGCGGCAGGTTCAGCTGGGGTTGGCGCTGGCGGCACATCCGGCATGGC  >  REL606/1157272‑1157340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.