New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2962019 =71 (0.690)12 (0.160) 4/34 NT 19.5% coding (1189/1278 nt) yggP predicted dehydrogenase
?REL606 3792210 = 49 (0.670)coding (316/414 nt) ECB_03532 hypothetical protein

AGGCAAAACCGATCCGCTGTTTAAAGAGTTGGCGCGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2962059‑2962019
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctggGTGGGGGAAATCGATCCATATGGTTATTTTTCAG  >  REL606/3792210‑3792243
                                                                           
AGGCAAAACCGATCCGCTGTTTAAAGAGTTGGCGC                                          >  1:18417899/1‑35
AGGCAAAACCGATCCGCTGTTTAAAGAGTTGGCGC                                          >  1:15414008/1‑35
AGGCAAAACCGATCCGCTGTTTAAAGAGTTGGCGC                                          >  1:8851595/1‑35
AGGCAAAACCGATCAGCTGTTTAAAGAGTTGGCGC                                          <  1:6365185/35‑1
  GCAAACCCGATCCGCTGTTTAAAGAGTTGGCGCGG                                        <  1:16394742/35‑1
   CAAAACCGATCCGCTGTTTAAAGAGTTGGCGCGGC                                       >  1:16239139/1‑35
   CAAAACCGATCCGCTGTTTAAAGAGTTGGCGCGGC                                       >  1:9361146/1‑35
    AAACCCGATCCGCTGTTTAAAGAGTTGGCGCGGCT                                      <  1:17183009/35‑1
    AAACCCGATCCGCTGTTTAAAGAGTTGGCGCGGCT                                      <  1:5343486/35‑1
    AAACCCGATCCGCTGTTTAAAGAGTTGGCGCGGCT                                      <  1:11829912/35‑1
    AAAACCGATCCGCTGTTTAAAGAGTTGGCGCGGgt                                      >  1:7968559/1‑33
     aacCCGATCCGCTGTTTAAAGAGTTGGCGCGGCTG                                     <  1:1128323/32‑1
     AAACCGATCCGCTGTTTAAAGAGTTGGCGCGGCTG                                     >  1:17174343/1‑35
     AAACCGATCCGCTGTTTAAAGAGTTGGCGCGGCTG                                     >  1:12162294/1‑35
     AAACCGATCAGCTGTTTAAAGAGTTGGCGCGGCTG                                     <  1:878128/35‑1
      ccCCGATCCGCTGTTTAAAGAGTTGGCGCGGCTGG                                    <  1:2347085/33‑1
      AACCGATCCGCTGTTTAAAGAGTTGGCGCGGCTGG                                    >  1:2618353/1‑35
          GATCCGCTGTTTAAAGAGTTGGCGCGGCTGGGGGG                                >  1:12625255/1‑35
          GATCCGCTGTTTAAAGAGTTGGCGCGGCTGGGGGG                                >  1:1355159/1‑35
          GATCCGCTGTTTAAAGAGTTGGCGCGGCTGGGGGG                                >  1:15363002/1‑35
             CCGCTGTTTAAAGAGTTGGCGCGGCTGGGTGGGGG                             >  1:3095025/1‑35
              CGCTGTTTAAAGAGTTGGCGCGGCTGGGTGGGGaa                            >  1:738952/1‑33
              CGCTGTTTAAAGAGTTGGCGCGGCTGGGTGGGGGA                            >  1:12797180/1‑35
              CGCTGTTTAAAGAGTTGGCGCGGCTGGGTGGGGGA                            >  1:19478089/1‑35
              CGCTGTTTAAAGAGTTGGCGCGGCTGGGTGAGGGA                            >  1:3368885/1‑35
              CGCTGTTTAAAGAGTTGGCGCGGCTGGGTGAGGGA                            >  1:9884877/1‑35
               GCTGTTTAAAGAGTTGGCGCGGCTGGGTGGGGGAA                           >  1:5185258/1‑35
               GCTGTTTAAAGAGTTGGCGCGGCTGGGGGGGGGAA                           >  1:10601733/1‑35
                CTGTTTAAAGAGTTGGCGCGGCTGGGTGGGGGAAA                          >  1:1758478/1‑35
                CTGTTTAAAGAGTTGGCGCGGCTGGGTGGGGGAAA                          >  1:13235260/1‑35
                 TGTTTAAAGAGTTGGCGCGGCTGGGTGGGGAAAAg                         >  1:1441835/1‑34
                  GTTTAAAGAGTTGGCGCGGCTGGGTGGGGGAAAgc                        >  1:9586665/1‑33
                                  CGGCTGGGTGTGGGAAATCGATCCATATGGTTATT        >  1:7924097/1‑35
                                  CGGCTGGGTGGGGGAAATCGATCCATATGGTTATT        <  1:17922336/35‑1
                                   tGCTGGGTGGGGGAAATCGATCCATATGGTTATTT       <  1:15447231/34‑1
                                   GGCTGGGTGGGGGAAATCGATCCATATGGTTATTT       >  1:574808/1‑35
                                   GGCTGGGTGGGGGAAATCGATACATATGGTTATTT       <  1:20097486/35‑1
                                    GCTGGGTGGGGGAAATCGATCCATATGGTTATTTT      <  1:1984745/35‑1
                                    GCTGGGTGGGGGAAATCGATCCATATGGTTATTTT      >  1:1489464/1‑35
                                    GCTGGGTGGGGGAAATCGATCCATATGGTTATTTT      >  1:15476910/1‑35
                                    GCTGGGTGGGGGAAATCGATCCATATGGTTATTTT      <  1:1757506/35‑1
                                     CTGGGTGGGGGAAATCGATCCATATGGTTATTTTT     <  1:7692850/35‑1
                                     CTGGGTGGGGGAAATCGATCCATATGGTTATTTTT     <  1:20495253/35‑1
                                     CTGGGTGGGGGAAATCGATCCATATGGTTATTTTN     <  1:16471710/35‑1
                                      TGGGTGGGGGAAATCTATCCATATGGTTATTTTTC    >  1:16041226/1‑35
                                      TGGGTGGGGGAAATCGATCCATATGGTTATTTTTC    >  1:7152778/1‑35
                                      TGGGTGGGGGAAATCGATCCATATGGTTATTTTTC    >  1:13859242/1‑35
                                       GGGTGGGGGAAATCGATCCATATGGTTATTTTCCA   <  1:19263989/35‑1
                                        GGTGGGGGAAATCGATCCATATGGTTATTTTTTAG  >  1:11437667/1‑35
                                        GGTGGGGGAAATCGATCCATATGGTTATTTTTCAG  <  1:15877813/35‑1
                                        GGTGGGGGAAATCGATCCATATGGTTATTTTTCAG  >  1:7544366/1‑35
                                        GGTGGGGGAAATCGATCCATATGGTTATTTTTCAG  <  1:17461139/35‑1
                                                                           
AGGCAAAACCGATCCGCTGTTTAAAGAGTTGGCGCGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2962059‑2962019
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctggGTGGGGGAAATCGATCCATATGGTTATTTTTCAG  >  REL606/3792210‑3792243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.