New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 304063893 (0.910)11 (0.140) 3/38 NT 14.8% coding (649/810 nt) pppA bifunctional prepilin leader peptidase/ methylase
?REL606 4567447 = 53 (0.650)coding (1808/2151 nt) yjiY predicted inner membrane protein

Only 100 of 242 total aligned reads displayed.

GCAACGTTGGGCAGTGATAACGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGTAATACATCGCCCATG  >  REL606/3040604‑3040672
                                  |                                  
gCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC                                    <  1:3066035‑M1/35‑1 (MQ=255)
    cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt                                >  1:10222368/1‑35 (MQ=255)
    cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt                                <  1:13582016/35‑1 (MQ=255)
    cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt                                >  1:9676080/1‑35 (MQ=255)
     gTTGGGCAGTGATAACGCCCCCACCCAGCCACCTa                               >  1:5208425/1‑35 (MQ=255)
     gTTGGGCAGTGATAACGCCCCCACCCAGCCACCTa                               >  1:7675151/1‑35 (MQ=255)
     gTTGGGCAGTGATAACGCCCCCACCCAGCCACCTa                               >  1:20595882/1‑35 (MQ=255)
       tGGGCAGTGATAACGCCCCCACCCAGCCACCTaaa                             <  1:10657909/35‑1 (MQ=255)
       tGGGCAGTGATAACGCCCCCACCCAGCCACCTaaa                             <  1:4203986/35‑1 (MQ=255)
         ggCAGTGATAACGCCCCCACCCAGCCACCTAAAgc                           <  1:4690714/35‑1 (MQ=255)
          gCAGTGATAGCGCCCCCACCCAGCCACCTAAAgcg                          <  1:11439554/35‑1 (MQ=255)
          gCAGTGATAACGCCCCCACCCAGCCACCTAAAgcg                          >  1:6836959/1‑35 (MQ=255)
           cAGTGATAACGCCCCCACCCAGCCACCTAAAgctg                         >  1:10349810/1‑33 (MQ=255)
            aGTGATAACGCCCCCACCCAGCCACCTAAAgtggc                        <  1:19562502/35‑1 (MQ=255)
            aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc                        <  1:7259190/35‑1 (MQ=255)
            aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc                        >  1:16583678/1‑35 (MQ=255)
              tGATAACGCCCCCACCCAGCCACCTAAAGCGGCGa                      <  1:6094578/35‑1 (MQ=255)
              tGATAACGCCCCCACCCAGCCACCTAAAGCGGCGa                      >  1:18519554/1‑35 (MQ=255)
                aTAACGCCCCCACCCAGCCACCTAAAGCGGCGAag                    >  1:14741136/1‑35 (MQ=255)
                  aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag                  >  1:19771463/1‑35 (MQ=255)
                  aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag                  <  1:9737489/35‑1 (MQ=255)
                  aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag                  >  1:617903/1‑35 (MQ=255)
                  aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag                  <  1:4956757/35‑1 (MQ=255)
                   ccGCCCACACCCAGCCACCTAAAGCGGCGAAGAGt                 <  1:16348231/34‑1 (MQ=255)
                   acccccccaccCAGCCAgcgcggatttgccccaac                 <  1:14210319‑M1/32‑19 (MQ=255)
                   aCGCCCTCACCCAGCCACCTAAAGCGGCGAAGAGt                 >  1:12905412/1‑35 (MQ=255)
                   aCGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGt                 <  1:8238119/35‑1 (MQ=255)
                   aCGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGt                 >  1:2371598/1‑35 (MQ=255)
                   aCGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGt                 <  1:12771130/35‑1 (MQ=255)
                    cGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGTa                <  1:14048577/35‑1 (MQ=255)
                    cGCCCCCACCCAGACACCTAAAGCGGCGAAGAGTa                <  1:12001333/35‑1 (MQ=255)
                     gCCCCCACCCAGCCAgcgcggatttgccccaacgg               <  1:10627634‑M1/35‑21 (MQ=255)
                     gCCCCCACCCAGCCAgcgcggatttgccccaacgg               <  1:17460161‑M1/35‑21 (MQ=255)
                     ccccccaCCCAGCCAgcgcggatttgccccaacgg               <  1:9301780‑M1/34‑21 (MQ=255)
                      cccccGCCCAGCCggaacaacagttacccagatgt              <  1:5289687‑M1/35‑23 (MQ=255)
                      cacccacccagcCggaacaacagttacccagatgt              <  1:17550392‑M1/33‑23 (MQ=255)
                       gcccatccagCCggaacaacagttacccagatgta             <  1:18790681‑M1/34‑24 (MQ=255)
                       ccccACCCAGCCAgcgcggatttgccccaacggta             <  1:5633891‑M1/35‑23 (MQ=255)
                       ccccACCCAGCCAgcgcggatttgccccaacggta             <  1:17235531‑M1/35‑23 (MQ=255)
                       ccccACCCAGCCACCTAAAGCGGCGAAGAGTAATa             >  1:3586085/1‑35 (MQ=255)
                       ccccACCCAGCCACCTAAAGCGGCGAAGAGTAATa             <  1:19048868/35‑1 (MQ=255)
                       acccccccagCCggaacaacagttacccagatgta             <  1:13013277‑M1/34‑24 (MQ=255)
                        cccacccaGCCggaacaacagttacccagatgtat            <  1:15161398‑M1/35‑25 (MQ=255)
                        cccacccaGCCAgcgcggatttgccccaacggtac            <  1:4475286‑M1/35‑24 (MQ=255)
                        cccacccaGCCAgcgcggatttgccccaacggtac            <  1:2481547‑M1/35‑24 (MQ=255)
                        cccacccaGCCACCTAAAGCGGCGAAGAGTAATAc            <  1:2979460/35‑1 (MQ=255)
                         ccacccaGCCACCTAAAGCGGCGAAGAGTAATACa           <  1:17127316/35‑1 (MQ=255)
                         caacccagcCAgcgcggatttgccccaacggtaca           <  1:550927‑M1/33‑25 (MQ=255)
                          cccccagcCggaacaacagttacccagatgtattg          <  1:3284306‑M1/33‑27 (MQ=255)
                           ccccagCCggaacaacagttacccagatgtattgg         <  1:11037905‑M1/34‑28 (MQ=255)
                           ccccagCCggaacaacagttacccagatgtattgg         <  1:3404639‑M1/34‑28 (MQ=255)
                           acccaGCCAgcgcggatttgccccaacggtacgcg         <  1:5540549‑M1/35‑27 (MQ=255)
                           acccaGCCAgcgcggatttgccccaacggtacgcg         <  1:19264190‑M1/35‑27 (MQ=255)
                           acccaGCCACCTAAAGCGGCGAAGAGTAATACATc         <  1:8618416/35‑1 (MQ=255)
                           acccaGCCACCTAAAGCGGCGAAGAGTAATACATc         >  1:8347669/1‑35 (MQ=255)
                           acccaGCCACCTAAAGCGGCGAAGAGTAATACATc         <  1:13837212/35‑1 (MQ=255)
                           acccaGCCACCTAAAGCGGCGAAGAGTAATACATc         >  1:15998529/1‑35 (MQ=255)
                           acccaGCCACCTAAAGCGGCGAAGAGTAATACATc         <  1:15725870/35‑1 (MQ=255)
                            cccaGCCAgcgcggatttgccccaacggtacgcgg        <  1:17943456‑M1/35‑28 (MQ=255)
                            cccaGCCAgcgcggatttgccccaacggtacgcgg        <  1:7806011‑M1/35‑28 (MQ=255)
                            cccaGCCACCTAAAGCGGCGAAGAGTAATACATCg        <  1:10955903/35‑1 (MQ=255)
                            cccaGCCACCTAAAGCGGCGAAGAGTAATACATCg        >  1:8206056/1‑35 (MQ=255)
                            accagccagcggggatttgccccaacggtacgcgg        <  1:7532043‑M1/34‑28 (MQ=255)
                            accagccagcgcggatttgccccaacggtacgcgg        <  1:3805004‑M1/34‑28 (MQ=255)
                             ccaGCCggaacaacagttacccagatgtattgggt       <  1:8729975‑M1/35‑30 (MQ=255)
                             ccaGCCACCTAAAGCGGCGAAGAGTAATACATCGc       >  1:15057770/1‑35 (MQ=255)
                              caGCCggaacaacagttacccagatgtattgggtg      <  1:8503302‑M1/35‑31 (MQ=255)
                              caGCCggaacaacagttacacagatgtattgggtg      <  1:11602959‑M1/35‑31 (MQ=255)
                              caGCCACCTAAAGCGGCGAAGAGTAATACATCGcc      >  1:3742170/1‑35 (MQ=255)
                              caGCCACCTAAAGCGGCGAAGAGTAATACATCGcc      >  1:17729530/1‑35 (MQ=255)
                               agccagcgcggatttgccccaacggtacgcggtat     >  1:18638649‑M1/1‑5 (MQ=255)
                               agccagcgcggatttgccccaacggtacgcggtat     >  1:12301898‑M1/1‑5 (MQ=255)
                               agccagcgcggatttgccccaacggtacgcggtat     >  1:18040797‑M1/1‑5 (MQ=255)
                               aGCCACCTAAAGCGGCGAAGAGTAATACATCGccc     <  1:19894162/35‑1 (MQ=255)
                               aGCCACCTAAAGCGGCGAAGAGTAATAAACCGccc     <  1:19373851/35‑1 (MQ=37)
                                gccagcgcggatttgccccaacggtacgcggtatc    <  1:11902399‑M1/35‑32 (MQ=255)
                                gccagcgcggatttgccccaacggtacgcggtatc    <  1:16169703‑M1/35‑32 (MQ=255)
                                gccagcgcggatttgccccaacggtacgcggtata    >  1:10946309‑M1/1‑4 (MQ=255)
                                gCCggaacaacagttacccagatgtattgggtgcg    >  1:5760437‑M1/1‑3 (MQ=255)
                                gCCggaacaacagttacccagatgtattgggtgcg    <  1:9228813‑M1/35‑33 (MQ=255)
                                gCCggaacaacagttacccagatgtattgggtgcg    >  1:13317056‑M1/1‑3 (MQ=255)
                                gCCACCTAAAGCGGCGAAGAGTAATACATCGCCCa    <  1:15403046/35‑1 (MQ=255)
                                 ccggaacaacagttacccagatgtattgggtgcgc   >  1:14299945‑M1/1‑2 (MQ=255)
                                 ccggaacaacagttacccagatgtattgggtgcgc   >  1:15884597‑M1/1‑2 (MQ=255)
                                 ccggaacaacagttacccagatgtattgggtgcgc   <  1:10869296‑M1/35‑34 (MQ=255)
                                 ccggaacaacagttacccagatgtattgggtgcgc   <  1:15829767‑M1/35‑34 (MQ=255)
                                 ccggaacaacagttacccagatgtattgggtgcgc   >  1:1554553‑M1/1‑2 (MQ=255)
                                 ccagcgcggatttgccccaacggtacgcggtatcg   <  1:10100476‑M1/35‑33 (MQ=255)
                                 ccACCTAAAGCGGCGAAGAGTAATACATCGCCCAt   <  1:6389696/35‑1 (MQ=255)
                                 ccACCTAAAGCGGCGAAGAGTAATACATCGCCCAt   <  1:5836908/35‑1 (MQ=255)
                                 ccACCTAAAGCGGCGAAGAGTAATACATCGCCCAt   <  1:12478468/35‑1 (MQ=255)
                                 ccACCTAAAGCGGCGAAGAGTAATACATCGCCCAt   <  1:13512666/35‑1 (MQ=255)
                                  cggaacaacagttacccagatgtattgggtgcgct  >  1:7274518‑M1/1‑1 (MQ=255)
                                  cggaacaacagttacccagatgtattgggtgcgct  >  1:11953370‑M1/1‑1 (MQ=255)
                                  cggaacaacagttacccagatgtattgggtgcgct  >  1:16681461‑M1/1‑1 (MQ=255)
                                  cggaacaacagttacccagatgtattgggtgcgct  >  1:3350689‑M1/1‑1 (MQ=255)
                                  cggaacaacagttacccagatgtattgggtgcgct  <  1:20237443‑M1/35‑35 (MQ=255)
                                  cagcgcggatttgccccaacggtacgcggtatcgc  >  1:6660442‑M1/1‑2 (MQ=255)
                                  cagcgcggatttgccccaacggtacgcggtatcgc  >  1:864839‑M1/1‑2 (MQ=255)
                                  cACCTAAAGCGGCGAAGAGTAATACATCGCCCATg  <  1:18505853/35‑1 (MQ=255)
                                  |                                  
GCAACGTTGGGCAGTGATAACGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGTAATACATCGCCCATG  >  REL606/3040604‑3040672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.