New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1493185 | 140 (1.360) | 10 (0.120) | 4/38 | NT | 10.9% | intergenic (‑10/‑232) | yncD/yncE | predicted iron outer membrane transporter/hypothetical protein |
? | REL606 | 3269358 = | 53 (0.650) | coding (415/972 nt) | ispB | octaprenyl diphosphate synthase |
Only 100 of 137 total aligned reads displayed.
TTCACTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACT > REL606/3269324‑3269392 | ttCACTCAAAGTGCTGGAAGTCATGTCAGAAGCCg > 1:821512/1‑35 (MQ=255) ttCACTCAAAGTGCTGGAAGTCATGTCAGAAGCCg < 1:11989622/35‑1 (MQ=255) ttCACTCAAAGTGCTGGAAGTCATGTCAGAAGCCg < 1:2849170/35‑1 (MQ=255) cACTCAAAGTGCTGGAAGGCATGTCAGAAGCCgga > 1:1828927/1‑33 (MQ=37) aCTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTaa > 1:11804800/1‑35 (MQ=255) cTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTaaa > 1:9483759/1‑35 (MQ=255) cTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTaaa > 1:19144147/1‑35 (MQ=255) cTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTaaa > 1:713823/1‑35 (MQ=255) tCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAAc > 1:7221821/1‑35 (MQ=255) tCAAAGTGCTGGAAGGCATGTCAGAAGCCGGAAAc > 1:8398441/1‑35 (MQ=25) cAAAGTGCTTGAAGTCATGTCAGAAGCCGTAAACg > 1:12658975/1‑35 (MQ=255) cAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACg > 1:9366430/1‑35 (MQ=255) cAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACg > 1:10143401/1‑35 (MQ=255) aaaGTGCTGGAAGTCATGTCAGAAGCCGTAAACgc > 1:2861447/1‑34 (MQ=255) aaGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTc > 1:6800023/1‑35 (MQ=255) aGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCa > 1:9900426/1‑35 (MQ=255) aGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCa > 1:17018567/1‑35 (MQ=255) aGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCa > 1:11305438/1‑35 (MQ=255) gTGCTGGAATTCATGTAAAAAGCCGTAAACGTCAt < 1:11692685/35‑1 (MQ=25) tGCTGGAAGTCATGTCAGAAGCCGTAAACGCCacc > 1:4737010/1‑33 (MQ=37) gCTTGAAGTCATGTCAGAAGCCGTAAACGTCATCg > 1:1905081/1‑35 (MQ=255) gCTTGAAGTCATGTCAGAAGCCGTAAACGTCATCg > 1:13131996/1‑35 (MQ=255) cTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGc > 1:20085027/1‑35 (MQ=255) cTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGc > 1:8643949/1‑35 (MQ=255) cTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGc > 1:4117835/1‑35 (MQ=255) cTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGc > 1:16976832/1‑35 (MQ=255) ggAAGTCATGTCAGAAGCCGTAAACGTCATCGCAg > 1:17240909/1‑35 (MQ=255) gAAGTGATGCAAAAAGCCGTAAACGTCATCGCAGa < 1:1585567/35‑1 (MQ=19) gAAGTCATGTCAGAAGCCGTAACCGTCATCGCAGa > 1:8490183/1‑35 (MQ=255) gAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGa > 1:2129405/1‑35 (MQ=255) aaggTCATGTAAAAAGCCGTAAACGTCATCGCAGa < 1:19291189/32‑1 (MQ=25) atttCAGGTAAGAAGCCGTAAACGTCATCGCAGaa < 1:5221351/32‑1 (MQ=25) aagtcatgaaaaaagccGTAAACGTCATCGCAGaa < 1:14863091‑M2/18‑1 (MQ=255) aaGTCATGTCAGAAGCCGTAAACGTCATCGCAGaa > 1:12977504/1‑35 (MQ=255) aaGTCATGTCAGAAGCCGTAAACGTCATCGCAGaa > 1:7090921/1‑35 (MQ=255) aaGTCATGTCAGAAGCCGTAAACGTCATCGCAGaa > 1:14017402/1‑35 (MQ=255) aGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAg > 1:15162894/1‑35 (MQ=255) aGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAg > 1:18947254/1‑35 (MQ=255) gtcatgtaaaaagccGTAAACGTCATCGCAGAAgg < 1:5443679‑M2/20‑1 (MQ=255) gtcaggaaaaaagccGTAAACGTCATCGCAGAAgg < 1:2460917‑M2/20‑1 (MQ=255) tcatgaaaaaagccGTAAACGTCATCGCAGAAGGt < 1:8599467‑M2/21‑1 (MQ=255) tCATGTCAGAAGCCGTAAACGTCATCTCAGAAGGt > 1:4707755/1‑35 (MQ=255) tCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGt > 1:11702605/1‑35 (MQ=255) tCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGt > 1:18465100/1‑35 (MQ=255) cATGTCAGAAGCCGTAAACGTCATCGCATAAGGTg > 1:4081837/1‑35 (MQ=255) cATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTg > 1:5592309/1‑35 (MQ=255) cATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTg > 1:1551205/1‑35 (MQ=255) atgtaaaaagccGTAAACGTCATCGCAGAAGGTGa < 1:16674347‑M2/23‑1 (MQ=255) tgtaaaaagccGTAAACGTCATCGCAGAAGGTGaa < 1:19994859‑M2/24‑1 (MQ=255) tgaaaaaagccGTAAACGTCATCGCAGAAGGTGaa < 1:18106712‑M2/24‑1 (MQ=255) gtaaaaagccGTAAACGTCATCGCAGAAGGTGAAg < 1:3627903‑M2/25‑1 (MQ=255) gaaaaaagccGTAAACGTCATCGCAGAAGGTGAAg < 1:17310271‑M2/25‑1 (MQ=255) gTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAg > 1:12415366/1‑35 (MQ=255) gTCAGAAGCCGTAAACGTCATCGCAGAAGGGGAAg > 1:16086270/1‑35 (MQ=255) taaaaagccGTAAACGTCATCGCAGAAGGTGAAGt < 1:7725638‑M2/26‑1 (MQ=255) tCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGt > 1:19271802/1‑35 (MQ=255) tCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGt > 1:16206219/1‑35 (MQ=255) tCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGt > 1:1533258/1‑35 (MQ=255) tCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGt > 1:8754822/1‑35 (MQ=255) tCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGt > 1:3831421/1‑35 (MQ=255) tCAGAAGCCGTAAACGTCATCGCAGAAGGGGAAGt > 1:861652/1‑35 (MQ=255) gagaaagccGTAAACGTCATCGCAGAAGGTGAAGt < 1:1238145‑M2/26‑1 (MQ=255) aaaaaagccGTAAACGTCATCGCAGAAGGTGAAGt < 1:15090032‑M2/26‑1 (MQ=255) cAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGtt > 1:113132/1‑35 (MQ=255) cAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGtt > 1:9631980/1‑35 (MQ=255) cAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGtt > 1:1321362/1‑35 (MQ=255) aaaaagccGTAAACGTCATCGCAGAAGGTGAAGtt < 1:3684132‑M2/27‑1 (MQ=255) aaGAAGCCGTAAACGTCATCGCAGAAGGTGAAGtt < 1:1083777/34‑1 (MQ=255) aaaagccGTAAACGTCATCGCAGAAGGTGAAGTTc < 1:12446975‑M2/28‑1 (MQ=255) aaaagccGTAAACGTCATCGCAGAAGGTGAAGTTc < 1:18680726‑M2/28‑1 (MQ=255) aGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTc > 1:5794147/1‑35 (MQ=255) aGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTc > 1:5630088/1‑35 (MQ=255) aGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTc > 1:14307094/1‑35 (MQ=255) aGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTc > 1:5368432/1‑35 (MQ=255) gAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCt > 1:15281448/1‑35 (MQ=255) aaagccGTAAACGTCATCGCAGAAGGTGAGGTTCt < 1:15847646‑M2/29‑1 (MQ=255) aaagccGTAAACGTCATCGCAGAAGGTGAAGTTCt < 1:17454208‑M2/29‑1 (MQ=255) aaagccGTAAACGTCATCGCAGAAGGTGAAGTTCt < 1:5810413‑M2/29‑1 (MQ=255) aaagccGTAAACGTCATCGCAGAAGGTGAAGTTCt < 1:20498800‑M2/29‑1 (MQ=255) aagccGTAAACGTCATCGCAGAAGGTGAAGTTCTg < 1:13695300‑M2/30‑1 (MQ=255) agccGTAAACGTCATCGCAGAAGGTGAAGTTCTGc > 1:5591226‑M2/5‑35 (MQ=255) agccGTAAACGTCATCGCAGAAGGTGAAGTTCTGc > 1:4372515‑M2/5‑35 (MQ=255) agccGTAAACGTCATCGCAGAAGGTGAAGTTCTGc > 1:15471850‑M2/5‑35 (MQ=255) gccGTAAACGTCATCGCAGAAGGTGAAGTTCTGCa < 1:10578682‑M2/32‑1 (MQ=255) gccGTAAACGTCATCGCAGAAGGTGAAGTTCTGCa > 1:15519470‑M2/4‑35 (MQ=255) gccGTAAACGTCATAGCAGAAGGTGAAGTTCTGCa < 1:20288843‑M2/32‑1 (MQ=255) gCCGTAAACGTCATCGCAGACTGTGAAGTTCTGCa > 1:14869737/1‑35 (MQ=37) ccGTAAACGTCATCGCAGAAGGTGAAGTTCTGCaa < 1:6276713‑M2/33‑1 (MQ=255) ccGTAAACGTCATCGCAGAAGGTGAAGTTCTGCaa > 1:18248977‑M2/3‑35 (MQ=255) ccGTAAACGTCATCGCAGAAGGTGAAGTTCTGCaa > 1:1905636‑M2/3‑35 (MQ=255) cGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAc < 1:12246623‑M2/34‑1 (MQ=255) cGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAc < 1:11310561‑M2/34‑1 (MQ=255) cGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAc < 1:1373416‑M2/34‑1 (MQ=255) cGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAc > 1:13281076‑M2/2‑35 (MQ=255) gTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACt > 1:15643804/1‑35 (MQ=255) gTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACt < 1:7794205/35‑1 (MQ=255) gTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACt > 1:15416516/1‑35 (MQ=255) gTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACt < 1:18137297/35‑1 (MQ=255) gTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACt < 1:5365544/35‑1 (MQ=255) gTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACt < 1:18646001/35‑1 (MQ=255) | TTCACTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACT > REL606/3269324‑3269392 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |