New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 640120 =107 (1.040)10 (0.100) 3/46 NT 11.1% intergenic (+38/+17) cspE/ccrB cold shock protein E/camphor resistance protein CrcB
?REL606 2388696 = 58 (0.590)coding (457/810 nt) yfcA conserved inner membrane protein

CCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAA  >  REL606/2388662‑2388730
                                  |                                  
cgagCAGCCGGGCCAAAGAATCCATCATAAAAAcc                                    <  1:716323/32‑1 (MQ=255)
ccGGCAGCCGGGCCAAAGAATCCATCATAAAAAcc                                    <  1:14767140/35‑1 (MQ=255)
ccGGCAGCCGGGCCAAAGAATCCATCATAAAAAcc                                    <  1:19360966/35‑1 (MQ=255)
 cGGCAGCCGGGCCAAAGAATCCATCATAAAAACCg                                   >  1:13714857/1‑35 (MQ=255)
 cGGCAGCCGGGCCAAAGAATCCATCATAAAAACCg                                   <  1:7731394/35‑1 (MQ=255)
 cGGCAGCCGGGCCAAAGAATACATCATAAAAACCg                                   <  1:10491481/35‑1 (MQ=255)
  ggCAGCCGGGCCAAAGAATCCATCATAAAAACCGa                                  >  1:2257727/1‑35 (MQ=255)
   gCAGCCGGGCCAAAGAATCCATCATAAAAACCGat                                 >  1:2527607/1‑34 (MQ=255)
   gCAGCCGGGCCAAAGAATCCATCATAAAAACCGAc                                 >  1:18570560/1‑35 (MQ=255)
   gCAGCCGGGCCAAAGAATCCATCATAAAAACCGAc                                 >  1:748987/1‑35 (MQ=255)
     aGCCTGGCCAAAGAATCCATCATAAAAACCGATGc                               >  1:9846371/1‑35 (MQ=37)
     aGCCGGGCCAAAGAATCCATCATAAAAACCGACGc                               >  1:15990489/1‑35 (MQ=255)
     aGCCGGGCCAAAGAATCCATCATAAAAACCGACGc                               >  1:15776120/1‑35 (MQ=255)
     aGCCGGGCCAAAGAATCCATCATAAAAACCGACGc                               >  1:16905944/1‑35 (MQ=255)
     aGCCGGGCCAAAGAATCCATCATAAAAACCGACGc                               >  1:12825031/1‑35 (MQ=255)
     aGCCGGGCCAAAGAATCCATCATAAAAACCGACGc                               >  1:8579444/1‑35 (MQ=255)
     aGCCGGGCCAAAGAATCCATCATAAAAACCGACGc                               >  1:9602438/1‑35 (MQ=255)
      gCCGGGCCAAAGAATCCATCATAAAAACCGACGCa                              >  1:3637908/1‑35 (MQ=255)
       ccaggCCAAAGAATCCATCATAAAAACCGACGCAg                             >  1:4061769/4‑35 (MQ=255)
       ccGGGCCAAAGAATCCATCATAAAAACCGACGCAg                             >  1:19040755/1‑35 (MQ=255)
       ccGGGCCAAAGAATCCATCATAAAAACCGACGCAg                             >  1:12161983/1‑35 (MQ=255)
        cGGGCCAAAGAATCCATCATAAAAACCGACGCAGc                            >  1:14853285/1‑35 (MQ=255)
        cGGGCCAAAGAATCCATCATAAAAACCGACGCAGc                            >  1:4734498/1‑35 (MQ=255)
        cGGGCCAAAGAATCCATCATAAAAACCGACGCAGc                            >  1:10284367/1‑35 (MQ=255)
        cGGGCCAAAGAATCCATCATAAAAACCGACGCAGc                            >  1:1524029/1‑35 (MQ=255)
        cGGGCCAAAGAATCCATCATAAAAACCGACGCAGc                            >  1:1931697/1‑35 (MQ=255)
         gggCCAAAGAATCCATCATAAACACCGACGCAGcc                           >  1:1468040/1‑35 (MQ=255)
         gggCCAAAGAATCCATCATAAAAACCGACGCAGcc                           >  1:17193443/1‑35 (MQ=255)
         gggCCAAAGAATCCATCATAAAAACCGACGCAGcc                           >  1:8405905/1‑35 (MQ=255)
         gggCCAAAGAATCCATCATAAAAACCGACGCAGcc                           >  1:11023692/1‑35 (MQ=255)
         gggCCAAAGAATCCATCATAAAAACCGACGCAGcc                           >  1:17387530/1‑35 (MQ=255)
         gggCCAAAGAATCCATCATAAAAACCGACGCAGcc                           >  1:7075068/1‑35 (MQ=255)
         gggCCAAAGAATCCATCATAAAAACCGACGCAGcc                           >  1:14406809/1‑35 (MQ=255)
          ggCCAAAGAATCCATCATAAAAACCGACGCAGCCa                          >  1:7079506/1‑35 (MQ=255)
          ggCCAAAGAATCCATCATAAAAACCGACGCAGCCa                          >  1:18624775/1‑35 (MQ=255)
           gCCAAATAATCCATCATAAAAACCGACGCAGCCAc                         >  1:17872008/1‑35 (MQ=255)
           gCCAAAGAATCCATCATAAAAACCGACGCAGCCAc                         >  1:19511603/1‑35 (MQ=255)
           gCCAAAGAATCCATCATAAAAACCGACGCAGCCAc                         >  1:622973/1‑35 (MQ=255)
           gCCAAAGAATCCATCATAAAAACCGACGCAGCCAc                         >  1:4077784/1‑35 (MQ=255)
            ccAAAGAATCCATCATAAAAACCGACGCAGCCAcc                        >  1:8281609/1‑35 (MQ=255)
            ccAAAGAATCCATCATAAAAACCGACGCAGCCAcc                        >  1:20121483/1‑35 (MQ=255)
             cAAAGAATCCATCATAAAAACCGACGCAGCCACCg                       >  1:11507169/1‑35 (MQ=255)
             cAAAGAATCCATCATAAAAACCGACGCAGCCACCg                       >  1:10371545/1‑35 (MQ=255)
              aaaGAATCCATCATAAAAACCGACGCAGCCACCgg                      >  1:3245827/1‑35 (MQ=255)
               aaGAATCCATCATAAAAACCGACGCAGCCACCGGc                     >  1:13596585/1‑35 (MQ=255)
               aaGAATCCATCATAAAAACCGACGCAGCCACCGGc                     >  1:15487370/1‑35 (MQ=255)
                aGAATCCATCATAAAAACCGACGCAGCCACCGGCt                    >  1:2907947/1‑35 (MQ=255)
                aGAATCCATCATAAAAACCGACGCAGCCACCGGCt                    >  1:9579558/1‑35 (MQ=255)
                aGAATCCATCATAAAAACCGACGCAGCCACCGGCt                    >  1:4429203/1‑35 (MQ=255)
                aGAATCCATCATAAAAACCGACGCAGCCACCGGCt                    >  1:16552282/1‑35 (MQ=255)
                 gAATCCATCATAAAAACCGACGCAGCCACCGGCTa                   >  1:6956555/1‑35 (MQ=255)
                 gAATCCATCATAAAAACCGACGCAGCCACCGGCTa                   >  1:15111896/1‑35 (MQ=255)
                 gAATCCATCATAAAAACCGACGCAGCCACCGGCTa                   >  1:8476855/1‑35 (MQ=255)
                 aaaccaaaaaaaaacccCGACGCAGCCACCGGCTa                   <  1:4555264‑M2/18‑1 (MQ=255)
                  actCCATCATAAAAACCGACGCAGCCACCGGCTaa                  >  1:9159802/3‑34 (MQ=255)
                  aaTCCATCATAAAAACCGACGCAGCCACCGGCTaa                  >  1:14663552/1‑34 (MQ=255)
                  aaTCCATCATAAAAACCGACGCAGCCACCGGCTaa                  >  1:10506433/1‑34 (MQ=255)
                   aTCCATCATAAAAACCGACGCAGCCACCGGCTaat                 >  1:10849047/1‑33 (MQ=255)
                   aTCCATCATAAAAACCGACGCAGCCACCGGCTaat                 >  1:9068004/1‑33 (MQ=255)
                   aTCCATCATAAAAACCGACGCAGCCACCGGCTaat                 >  1:5346162/1‑33 (MQ=255)
                   aTCCATCATAAAAACCGACGCAGCCACCGGCTaaa                 >  1:2651499/1‑33 (MQ=255)
                    tCCATCATAAAAACCGACGCAGCCACCGGCTaaaa                >  1:2308076/1‑32 (MQ=255)
                    tCCATCATAAAAACCGACGCAGCCACCGGCTaaaa                >  1:12085689/1‑32 (MQ=255)
                    tCCATCATAAAAACCGACGCAGCCACCGGCTAATa                >  1:3502212/1‑35 (MQ=255)
                    tCCATCATAAAAACCGACGCAGCCACCGGCTAATa                >  1:2378948/1‑35 (MQ=255)
                     ccaaaaaaaacccCGACGCAGCCACCGGCTATTaa               <  1:17103188‑M2/22‑1 (MQ=255)
                     caaaaaaaaacccCGACGCAGCCACCGGCTATTaa               <  1:5023736‑M2/22‑1 (MQ=255)
                      caaaaaaaacccCGACGCAGCCACCGGCTATTAAc              <  1:11913648‑M2/23‑1 (MQ=255)
                       caaaaaaacccCGACGCAGCCACCGGCTATTAAcg             <  1:17174312‑M2/24‑1 (MQ=255)
                       atcatAAAAACCGACGCAGCCACCGGCTAATaaaa             >  1:9654707/1‑33 (MQ=38)
                       atcatAAAAACCGACGCAGCCACCGGCTAATAAca             >  1:16605408/1‑34 (MQ=255)
                       aaaaaaaacccCGACGCAGCCACCGGCTATTAAcg             <  1:7304020‑M2/24‑1 (MQ=255)
                       aaaaaaaacccCGACGCAGCCACCGGCTATTAAcg             <  1:10326732‑M2/24‑1 (MQ=255)
                       aaaaaaaacccCGACGCAGCCACCGGCTATTAAcg             <  1:1520549‑M2/24‑1 (MQ=255)
                        tcatAAAAACCGACGCAGCCACCGGCTAATaaaac            >  1:4548245/1‑32 (MQ=37)
                        caaaaaacccCGACGCAGCCACCGGCTATTAAcgc            <  1:5457112‑M2/25‑1 (MQ=255)
                           tAAAAACCGACGCAGCCACCGGCTAATAAAACGaa         >  1:2793215/1‑35 (MQ=25)
                           aaaacccCGACGCAGCCACCGGCTATTAACGCGaa         <  1:17624291‑M2/28‑1 (MQ=255)
                            aaaaaCCGACGCAGCCACCGGCTAATAAAACGaaa        >  1:9212027/1‑34 (MQ=25)
                              ccccCGACGCAGCCACCGGCTATTAACGCGAAggg      <  1:12867182‑M2/31‑1 (MQ=255)
                              acccCGACGCAGCCACCGGCTATTAACGCGAAggg      <  1:17102213‑M2/31‑1 (MQ=255)
                              aaaCCGACGCAGCCACCGGCTAAAAAAACGAAggg      >  1:5805100/1‑35 (MQ=19)
                               cccCGACGCAGCCACCGGCTATTAACGCGAAGGGt     <  1:10151763‑M2/32‑1 (MQ=255)
                               cccCGACGCAGCCACCGGCTATTAACGCGAAGGGt     <  1:18905268‑M2/32‑1 (MQ=255)
                                ccCGCCGCAGCCACCGGCTATTAACGCGAAGGGTa    <  1:260464‑M2/33‑1 (MQ=255)
                                aCCGACGCAGCCACCGGCTAAAAAAACGAAgggga    >  1:4263926/1‑33 (MQ=16)
                                 cCGACGCAGCCACCGGCTATTAACGCGAAGGGTaa   <  1:12259354‑M2/34‑1 (MQ=255)
                                 cCGACGCAGCCACCGGCTATTAACGCGAAGGGTaa   <  1:14191187‑M2/34‑1 (MQ=255)
                                 cCGACGCAGCCACCGGCTATTAACGCGAAGGGTaa   <  1:18332797‑M2/34‑1 (MQ=255)
                                  cGACGCAGCCACCGGCTATTAACGCGAAGGGTaaa  <  1:236790/35‑1 (MQ=255)
                                  cGACGCAGCCACCGGCTATTAACGCGAAGGGTaaa  <  1:19839005/35‑1 (MQ=255)
                                  cGACGCAGCCACCGGCTAAAAAAACGAAGGGGaaa  >  1:20236073/1‑35 (MQ=12)
                                  |                                  
CCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAA  >  REL606/2388662‑2388730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.