New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 408655471 (0.690)6 (0.070) 5/42 NT 6.5% coding (604/903 nt) fieF ferrous iron efflux protein F
?REL606 4620932 = 111 (1.230)intergenic (+49/‑41) slt/trpR lytic murein transglycosylase, soluble/Trp operon repressor

Only 100 of 184 total aligned reads displayed.

ATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGA  >  REL606/4620898‑4620966
                                  |                                  
ttatatagcgcgttacgtatgggatatgaggcggg                                    >  1:7499399‑M2/35‑35 (MQ=255)
ttatatagcgcgttacgcatgggatatgaggcggg                                    >  1:9367883‑M2/35‑35 (MQ=255)
atatGCTATCGTACTCTTTAGCGAGTACAACCggg                                    <  1:17464/35‑1 (MQ=255)
atatGCTATCGTACTCTTTAGCGAGTACAACCggg                                    >  1:336513/1‑35 (MQ=255)
 tatGCTATCGTACTCTTTAGCGAGTACAACCgggg                                   <  1:17959178/35‑1 (MQ=255)
 tatGCTATCGTACTCTTTAGCGAGTACAACCgggg                                   <  1:11559202/35‑1 (MQ=255)
  atatagcgcgttacgcatgggatatgaggcggggg                                  >  1:1462364‑M2/33‑35 (MQ=255)
  atGCTATCGTACTCTTTAGCGAGTACAACCggggg                                  >  1:19141322/1‑35 (MQ=255)
  atGCTATCGTACTCTTTAGCGAGTACAACCggggg                                  <  1:8813962/35‑1 (MQ=255)
  atGCTATCGTACTCTTTAGCGAGTACAACCggggg                                  >  1:4842667/1‑35 (MQ=255)
  atGCTATCGTACTCTTTAGCGAGTACAACCggggg                                  >  1:13389335/1‑35 (MQ=255)
  atGCTAGCGTACTCTTTAGCGAGTCCAACCggggg                                  <  1:16395530/35‑1 (MQ=37)
   tatagcgcgttacgcatgggatatgaggcggGAGa                                 >  1:15818132‑M2/32‑35 (MQ=255)
   tGCTATCGTACTCTTTAGCGAGTACAACCGGGGGa                                 >  1:17502501/1‑35 (MQ=255)
   tGCTATCGTACTCTTTAGCGAGTACAACCGGGGGa                                 >  1:5562413/1‑35 (MQ=255)
   tGCTATCGTACTCTTTAGCGAGTACAACCGGGGGa                                 >  1:5987318/1‑35 (MQ=255)
   tGCTATCGTACTCTTTAGCGAGTACAACCGGGGGa                                 <  1:12940924/35‑1 (MQ=255)
    atagcgcgttacgcatgggatatgaggcggGGCAg                                >  1:6164598‑M2/31‑35 (MQ=255)
     cTATCGTACTCTTTAGCGAGTACAACCGGGGGAgg                               >  1:6984529/1‑35 (MQ=255)
     cTATCGTACTCTTTAGCGAGTACAACCGGGGGAgg                               <  1:3348790/35‑1 (MQ=255)
     cTATCGTACTCTTTAGCGAGTACAACCGGGGGAgg                               >  1:15971778/1‑35 (MQ=255)
      tATCGTACTCTTTAGCGAGTACAACCGGGGGAGGc                              >  1:13862968/1‑35 (MQ=255)
      tATCGTACTCTTTAGCGAGTACAACCGGGGGAGGc                              >  1:12228648/1‑35 (MQ=255)
      agcgcgttacgcatgggatatgaggcggGGCAGGc                              >  1:7944328‑M2/29‑35 (MQ=255)
       aTCGTACTCTTTAGCGAGTACAACCGGGTGAGGCa                             >  1:7178216/1‑35 (MQ=255)
       aTCGTACTCTTTAGCGAGTACAACCGGGGGAGGCa                             >  1:13911124/1‑35 (MQ=255)
       aTCGTACTCTTTAGCGAGTACAACCGGGGGAGGCa                             <  1:3267945/35‑1 (MQ=255)
       aTCGTACTCTTTAGCGAGTACAACCGGGGGAGGCa                             >  1:5517147/1‑35 (MQ=255)
       aTCGTACTCTTTAGCGAGTACAACCGGGGGAGGCa                             >  1:1518116/1‑35 (MQ=255)
       aTCGTACTCTTTAGCGAGTACAACCGGGGGAGGCa                             >  1:3771035/1‑35 (MQ=255)
       aTCGTACTCTTTAGCGAGTACAACCGGGGGAGGCa                             >  1:11763303/1‑35 (MQ=255)
        tCGTACTCTTTAGCGAGTACAACCGGGGGAGGCAt                            <  1:9969603/35‑1 (MQ=255)
        tCGTACTCTTTAGCGAGTACAACCGGGGGAGGCAt                            >  1:1603765/1‑35 (MQ=255)
        tCGTACTCTTTAGCGAGTACAACCGGGGGAGGCAt                            >  1:13732755/1‑35 (MQ=255)
        cgcgttacgcatgggatatgaggcggGGGAGTCAt                            >  1:20281550‑M2/27‑35 (MQ=255)
         gcgttacgcatgggatatgaggcggGGGAGGCAtt                           >  1:6300936‑M2/26‑35 (MQ=255)
         cGTACTCTTTAGCGAGTACAACCGGGGGAGGCAtt                           >  1:7797115/1‑35 (MQ=255)
         cGTACTCTTTAGCGAGTACAACCGGGGGAGGCAtt                           >  1:17821781/1‑35 (MQ=255)
         cGTACTCTTTAGCGAGTACAACCGGGGGAGGCAtt                           <  1:1964595/35‑1 (MQ=255)
          gTACTCTTTAGCGAGTACAACCGGGGGAGGCAttt                          >  1:3482199/1‑35 (MQ=255)
          cgttacgcatgggatatgaggcggGGGAGGCAttt                          >  1:855444‑M2/25‑35 (MQ=255)
           tACTCTTTAGCGAGTACAACCGTGGGAGGCAtttt                         >  1:2336817/1‑35 (MQ=255)
           tACTCTTTAGCGAGTACAACCGGGGGAGGCAtttt                         >  1:4970043/1‑35 (MQ=255)
           tACTCTTTAGCGAGTACAACCGGGGGAGGCAtttt                         <  1:12907666/35‑1 (MQ=255)
            aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTg                        >  1:8162376/1‑35 (MQ=255)
            aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTg                        >  1:19903674/1‑35 (MQ=255)
            aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTg                        <  1:17200565/35‑1 (MQ=255)
             ctctTTAGCGAGTACAACCGGGGGAGGCATTTTGc                       <  1:14990881/35‑1 (MQ=255)
             ctctTTAGCGAGTACAACCGGGGGAGGCATTTTGc                       >  1:18567802/1‑35 (MQ=255)
              tctTTAGCGAGTACAACCGGGGGAGGCATTTTGCt                      >  1:14057527/1‑35 (MQ=255)
              tctTTAGCGAGTACAACCGGGGGAGGCATTTTGCt                      >  1:10571212/1‑35 (MQ=255)
              tctTTAGCGAGTACAACCGGGGGAGGCATTTTGCt                      >  1:16142567/1‑35 (MQ=255)
               ctTTAGCGAGTACAACCGGGGGAGGCATTTTGCtt                     >  1:13623952/1‑35 (MQ=255)
               ctTTAGCGAGTACAACCGGGGGAGGCATTTTGCtt                     <  1:926573/35‑1 (MQ=255)
                tttAGCGAGTACAACCGGGGGAGGCATTTTGCTTc                    >  1:1329652/1‑35 (MQ=255)
                tttAGCGAGTACAACCGGGGGAGGCATTTTGCTTc                    <  1:15132057/35‑1 (MQ=255)
                 ttAGCGAGTACAACCGGGGGAGGCATTTTGCTTcc                   >  1:8547124/1‑35 (MQ=255)
                  tAGCGAGTACAACCGGGGGAGGCATTTTGCTTccc                  >  1:967390/1‑35 (MQ=255)
                   aGCGAGTACAACCGGGGGAGGCATTTTGCTTcccc                 <  1:7449732/35‑1 (MQ=255)
                   aGCGAGTACAACCGGGGGAGGCATTTTGCTTcccc                 <  1:2793916/35‑1 (MQ=255)
                   aGCGAGTACAACCGGGGGAGGCATTTTGCTTcccc                 <  1:243994/35‑1 (MQ=255)
                    gCGAGTACAACCGGGGGAGGCATTTTGCTTccccc                <  1:10494772/35‑1 (MQ=255)
                    gCGAGTACAACCGGGGGAGGCATTTTGCTTccccc                >  1:15192993/1‑35 (MQ=255)
                    gCGAGTACAACCGGGGGAGGCATTTTGCTTccccc                <  1:19964050/35‑1 (MQ=255)
                     cGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCg               <  1:19428414/35‑1 (MQ=255)
                     cGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCg               <  1:1195857/35‑1 (MQ=255)
                      gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGc              >  1:3089087/1‑35 (MQ=255)
                      gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGc              >  1:16045555/1‑35 (MQ=255)
                      gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGc              >  1:4209728/1‑35 (MQ=255)
                      gAGTACAACAGGGGGAGGCATTTTGCTTCCCCCGc              <  1:12352607/35‑1 (MQ=255)
                       aGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCt             <  1:9169115/35‑1 (MQ=255)
                       aGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCt             >  1:18697827/1‑35 (MQ=255)
                       aGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCt             <  1:5273057/35‑1 (MQ=255)
                       aGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCt             >  1:11072300/1‑35 (MQ=255)
                        gTACAGCCGGGGGAGGCATTTTGCTTCCCCCGCTa            <  1:20203225/35‑1 (MQ=255)
                        gTACAACCGGGGGATGCATTTTGCTTCCCCCGCTa            >  1:20074450/1‑35 (MQ=255)
                        gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTa            >  1:9422964/1‑35 (MQ=255)
                        gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTa            <  1:6351440/35‑1 (MQ=255)
                        gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTa            >  1:20592839/1‑35 (MQ=255)
                        gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTa            >  1:7364881/1‑35 (MQ=255)
                        gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTa            <  1:10302281/35‑1 (MQ=255)
                         tACAACCGGGGGAGGCATTTTGCTTCCCCCGCTaa           >  1:995025/1‑35 (MQ=255)
                          aCACCCGGGGGAGGCATTTTGCTTCCCCCGCTAAc          <  1:19286806/35‑1 (MQ=255)
                          aCAACCGGGGGAGGCATTTTGCTTCCCCCGCTAAc          >  1:9600404/1‑35 (MQ=255)
                           cAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACa         <  1:8005379/35‑1 (MQ=255)
                            agccGGGGGAGGCATTTTGCTTCCCCCGCTAACaa        <  1:19072885/33‑1 (MQ=255)
                            aaCCGGGGGAGGCATTTTGCTTCCCCCGCTAACaa        >  1:6025666/1‑35 (MQ=255)
                            aaCCGGGGGAGGCATTTTGCTTCCCCCGCTAACaa        <  1:18772515/35‑1 (MQ=255)
                            aaCCGGGGGAGGCATTTTGCTCCCCCCGCTAACaa        >  1:4456783/1‑35 (MQ=255)
                             cccGGGGGAGGCATTTTGCTTCCCCCGCTAGCAAt       <  1:11633347/34‑1 (MQ=255)
                             aCCGGGGGAGGCATTTTGCTTCCCCCGCTAACAAt       >  1:17092795/1‑35 (MQ=255)
                             aCCGGGGGAGGCATTTTGCTTCCCCCGCTAACAAt       >  1:14771030/1‑35 (MQ=255)
                             aCCGGGGGAGGCATTTTGCTTCCCCCGCTAACAAt       >  1:12733593/1‑35 (MQ=255)
                              ccGGGGGAGGCATTTTGCTTCCCCCGCTAACAATg      >  1:15527589/1‑35 (MQ=255)
                                 gGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCg   >  1:10884537‑M2/2‑35 (MQ=255)
                                 gGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCg   >  1:6021022‑M2/2‑35 (MQ=255)
                                  gggAGGCATTTTGCTTCCCCCGCTAACAATGGCGa  >  1:910219/1‑35 (MQ=255)
                                  gggAGGCATTTTGCTTCCCCCGCTAACAATGGCGa  >  1:9209656/1‑35 (MQ=255)
                                  gggAGGCATTTTGCTTCCCCCGCTAACAATGGCGa  <  1:15638001/35‑1 (MQ=255)
                                  gggAGGCATTTTGCTTCCCCCGCTAACAATGGCGa  >  1:19813558/1‑35 (MQ=255)
                                  |                                  
ATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGA  >  REL606/4620898‑4620966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.