New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1760819 =58 (0.560)7 (0.080) 5/42 NT 9.0% coding (575/1701 nt) ydiD hypothetical protein
?REL606 = 4434365 91 (1.010)coding (58/1503 nt) ytfR predicted sugar transporter subunit: ATP‑binding component of ABC superfamily

Only 100 of 105 total aligned reads displayed.

GCCACCTCTTCCCTCTCATTAAGTCAGATTATCGCCGACAATATCCCACTGACCACGGCGATAACGACC  >  REL606/1760785‑1760853
                                  |                                  
gCCACCTCTTCCCTCTCATTAAGTCAGATTATCGc                                    >  1:8974005/1‑35 (MQ=255)
atcctccgcaccgaaggattaagtaaatttttccc                                    <  1:10054729‑M1/1‑1 (MQ=255)
atcctccgcaccgaaggattaagtaaatttttccc                                    <  1:15453095‑M1/1‑1 (MQ=255)
atcctccgcaccgaaggattaagtaaatttttccc                                    <  1:18481861‑M1/1‑1 (MQ=255)
atcctccgcaccgaaggattaagtaaatttttccc                                    <  1:18337673‑M1/1‑1 (MQ=255)
atcctccgcaccgaaggattaagtaaatttttccc                                    >  1:656950‑M1/35‑35 (MQ=255)
 tcctccgcaccgaaggattaagtaaatttttcccc                                   <  1:3102003‑M1/2‑1 (MQ=255)
 tcctccgcaccgaaggattaagtaaatttttcccc                                   >  1:3784254‑M1/34‑35 (MQ=255)
 tcctccgcaccgaaggattaagtaaatttttcccc                                   <  1:1289196‑M1/2‑1 (MQ=255)
 tcctccgcaccgaaggattaagtaaatttttcccc                                   >  1:16572893‑M1/34‑35 (MQ=255)
 tcctccgcaccgaaggattaagtaaatttttcccc                                   <  1:9098792‑M1/2‑1 (MQ=255)
 ccACCTCTTCCCTCTCATTAAGTCAGATTATCGcc                                   >  1:15182276/1‑35 (MQ=255)
 ccACCTCTTCCCTCTCATTAAGTCAGATTATCGcc                                   <  1:13455570/35‑1 (MQ=255)
 ccACCTCTTCCCTCTCATTAAGTCAGATTATCGcc                                   <  1:7021288/35‑1 (MQ=255)
 ccACCTCTTCCCTCTCATTAAGTCAGATTATCGcc                                   <  1:6686526/35‑1 (MQ=255)
  cctccgcaccgaaggattaagtaaatttttccCCg                                  <  1:1218603‑M1/3‑1 (MQ=255)
  cctccgcaccgaaggattaagtaaatttttccCCg                                  >  1:2217837‑M1/33‑35 (MQ=255)
  cctccgaaccgaaggattaagtaaatttttccCCg                                  >  1:19087128‑M1/33‑35 (MQ=255)
  cACCTCTTCCCTCTCATTAAGTCAGATTATCGCCg                                  <  1:1847154/35‑1 (MQ=255)
  cACCTCTTCCCTCTCATTAAGTCAGATTATCGCCg                                  >  1:885908/1‑35 (MQ=255)
  cACCTCTTCCCTCTCATTAAGTCAGATTATCGCCg                                  >  1:9145106/1‑35 (MQ=255)
   aCCTCTTCCCTCTCATTAAGTCAGATTATCGCCGa                                 >  1:5119604/1‑35 (MQ=255)
    ccTCTTCCCTCTCATTAAGTCAGATTATCGCCGAc                                >  1:13379432/1‑35 (MQ=255)
    ccTCTTCCCTCTCATTAAGTCAGATTATCGCCGAc                                >  1:15722820/1‑35 (MQ=255)
    ccTCTTCCCTCTCATTAAGTCAGATTATCGCCGAc                                >  1:20590088/1‑35 (MQ=255)
     ctctTCCCTCTCATTAAGTCAGATTATCGCCGACa                               >  1:13073799/1‑35 (MQ=255)
      tctTCCCTCTCATTAAGTCAGATTATCGCCGACaa                              >  1:14295912/1‑35 (MQ=255)
      tctTCCCTCTCATTAAGTCAGATTATCGCCGACaa                              >  1:3400201/1‑35 (MQ=255)
         tCCCTCTCATTAAGTCAGATTATCGCCGACAatat                           >  1:17124819/1‑35 (MQ=255)
         tCCCTCTCATTAAGTCAGATTATCGCCGACAatat                           >  1:3431785/1‑35 (MQ=255)
            ctctCATTAAGTCAGATAATCGCCGACAATATccc                        >  1:4705925/1‑35 (MQ=255)
             tctcATTAAGTCAGATTATCGCCGACAATATCCCa                       >  1:20067026/1‑35 (MQ=255)
             tctcATTAAGTCAGATTATCGCCGACAATATCCCa                       >  1:18136782/1‑35 (MQ=255)
              ctcATTAAGTCAGATTATCGCCGACAATATCCCAc                      >  1:16190830/1‑35 (MQ=255)
              ctcATTAAGTCAGATTATCGCCGACAATATCCCAc                      >  1:424326/1‑35 (MQ=255)
               tcATTAAGTCAGATTATCGCCGACAATATCCCACt                     >  1:4147821/1‑35 (MQ=255)
               tcATTAAGTCAGATTATCGCCGACAATATCCCACt                     >  1:1017396/1‑35 (MQ=255)
                cATTAAGTCAGATTATCGCCGACAATATCCCACTg                    >  1:9182379/1‑35 (MQ=255)
                cATTAAGCCAGATTATCGCCGACAATATCCCACTg                    >  1:14064064/1‑35 (MQ=255)
                 aTTAAGTCAGATTATCGCCGCCAATATCCCACTGa                   >  1:15844212/1‑35 (MQ=255)
                 aTTAAGTCAGATTATCGCCGACAATATCCCACTGa                   >  1:1921220/1‑35 (MQ=255)
                 aTTAAGTCAGATTATCGCCGACAATATCCCACTGa                   >  1:105788/1‑35 (MQ=255)
                 aTTAAGTCAGATTATCGCCGACAATATCCCACTGa                   >  1:10646116/1‑35 (MQ=255)
                 aTTAAGTCAGATTATCGCCGACAATATCCCACTGa                   >  1:16326062/1‑35 (MQ=255)
                  ttAAGTCAGATTATCGCCGACAATATCCCACTGAc                  >  1:6899211/1‑35 (MQ=255)
                  ttAAGTCAGATTATCGCCGACAATATCCCACTGAc                  >  1:12475099/1‑35 (MQ=255)
                   tAAGTCAGATTATCGCCGACAATATCCCACTGAcc                 >  1:7716148/1‑35 (MQ=255)
                   aaaGTCAGATTATCGCCGACAATATCCCACTGAcc                 <  1:11503036/34‑1 (MQ=255)
                    aaGTCAGATTATCGCCGACAATATCCCACTGACCa                >  1:16082499/1‑35 (MQ=255)
                    aaGTCAGATTATCGCCGACAATATCCCACTGACCa                >  1:1386489/1‑35 (MQ=255)
                     aGTCAGATTATCGCCGACAATATCCCACTGACCAc               >  1:12104056/1‑35 (MQ=255)
                     aGTCAGATTATCGCCGACAATATCCCACTGACCAc               >  1:468836/1‑35 (MQ=255)
                     aGTCAGATTATCGCCGACAATATCCCACTGACCAc               >  1:19506799/1‑35 (MQ=255)
                     aGTCAGATTATCGCCGACAATATCCCACTGACCAc               >  1:12983572/1‑35 (MQ=255)
                      gtaaatttttccCCGACAATATCCCACTGACCACg              >  1:9628592‑M1/13‑35 (MQ=255)
                      gccAGATTATCGCCGACAATATCCCACTGACCACg              <  1:17147800/33‑1 (MQ=255)
                      gTCAGATTATCGCCGACAATATCCCACTGACCACg              >  1:12465960/1‑35 (MQ=255)
                       tCAGATTATCGCCGACAATATCCCACTGACCACgg             <  1:16332523/35‑1 (MQ=255)
                        aagtttttccCCGACAATATCCCACTGACCACGGc            >  1:2664451‑M1/11‑35 (MQ=255)
                        aagtttttccCCGACAATATCCCACTGACCACGGc            >  1:1493840‑M1/11‑35 (MQ=255)
                        aaatttttccCCGACAATATCCCACTGACCACGGc            >  1:1950362‑M1/11‑35 (MQ=255)
                        aaGATTTTCCCCGACAATATCCCACTGACCACGGc            <  1:14494440/34‑1 (MQ=37)
                         aGATTATCGCCGACAATATCCCACTGACCACGGCg           <  1:20431006/35‑1 (MQ=255)
                         aGATTATCGCCGACAATATCCCACTGACCACGGCg           >  1:2903633/1‑35 (MQ=255)
                         aGATTATCGCCGACAATATCCCACTGACCACGGCg           >  1:1735770/1‑35 (MQ=255)
                          gATTATCGCCGACAATATCCCACTGACCACGGCGa          >  1:831151/1‑35 (MQ=255)
                          gATTATCGCCGACAATATCCCACTGACCACGGCGa          >  1:8498519/1‑35 (MQ=255)
                          gATTATCGCCGACAATATCCCACTGACCACGGCGa          >  1:19667594/1‑35 (MQ=255)
                          gATTATCGCCGACAATATCCCACTGACCACGGCGa          >  1:11348197/1‑35 (MQ=255)
                          gATTATCGCCGACAATATCCCACTGACCACGGCGa          >  1:304907/1‑35 (MQ=255)
                          gATTATCGCCGACAATATCCCACTGACCACGGCGa          >  1:2676515/1‑35 (MQ=255)
                          atttttcgCCGACAATATCCCACTGACCACGGCGa          >  1:17798209‑M1/9‑35 (MQ=255)
                           tttttccCCGACAATATCCCACTGACCACGGCGAt         >  1:6349113‑M1/8‑35 (MQ=255)
                           aTTATCGCCGACAATATCCCACTGACCACGGCGAt         >  1:17458343/1‑35 (MQ=255)
                           aTTATCGCCGACAATATCCCACTGACCACGGCGAt         >  1:958080/1‑35 (MQ=255)
                           aTTATCGCCGACAATATCCCACTGACCACGGCGAt         >  1:14205420/1‑35 (MQ=255)
                           aTTATCGCCGACAATATCCCACTGACCACGGCGAt         >  1:4328146/1‑35 (MQ=255)
                           aTTATCGCCGACAATATCCCACTGACCACGGCGAt         >  1:4560499/1‑35 (MQ=255)
                           aTTATCGCCGACAATATCCCACTGACCACGGCGAt         >  1:1153149/1‑35 (MQ=255)
                           aTTATCGCCGACAATATCCCACTGACCACGGCGAt         >  1:11503475/1‑35 (MQ=255)
                           aTTATCGCCGACAATATCCCACTGACCACGGCGAt         >  1:14776603/1‑35 (MQ=255)
                            ttttccCCGACAATATCCCACTGACCACGGCGATa        >  1:2151917‑M1/7‑35 (MQ=255)
                            ttATCGCCGACAATATCCCACTGACCACGGCGATa        >  1:2014310/1‑35 (MQ=255)
                            ttATCGCCGACAATATCCCACTGACCACGGCGATa        >  1:8339241/1‑35 (MQ=255)
                            ttATCGCCGACAATATCCCACTGACCACGGCGATa        >  1:398225/1‑35 (MQ=255)
                            ttATCGCCGACAATATCCCACTGACCACGGCGATa        >  1:360628/1‑35 (MQ=255)
                              tcccCCGACAATATCCCACTGACCACGGCGATAAc      >  1:7715556‑M1/5‑35 (MQ=255)
                               tccCCGACAATATCCCACTGACCACGGCGATAACg     >  1:6767428‑M1/4‑35 (MQ=255)
                               tccCCGACAATATCCCACTGACCACGGCGATAACg     >  1:5034415‑M1/4‑35 (MQ=255)
                               tCGCCGACAATATCCCACTGACCACGGCGATAACg     <  1:4486292/35‑1 (MQ=255)
                               tCGCCGACAATATCCCACTGACCACGGCGATAACg     <  1:11373992/35‑1 (MQ=255)
                               ccGCCGACAATATCCCACTGAACACGGCGATAACg     <  1:15056006/34‑1 (MQ=255)
                                cGCCGACAATATCCCACTGACCACGGCGATAACGa    >  1:16017047/1‑35 (MQ=255)
                                cGCCGACAATATCCCACTGACCACGGCGATAACGa    >  1:14700286/1‑35 (MQ=255)
                                 gCCGACAATATCCCACTTACCACGGCGATAACCAc   >  1:16108112/1‑35 (MQ=37)
                                 gCCGACAATATCCCACTGACCACGGCGATAACGAc   >  1:3793212/1‑35 (MQ=255)
                                 cCCGACAATATCCCCCTGACCACGGCGATAACGAc   >  1:761807‑M1/2‑35 (MQ=255)
                                 cCCGACAATATCCCACTGACCACGGCGATAACGAc   >  1:11464009‑M1/2‑35 (MQ=255)
                                  CCGACAATATCCCACTGACCACGGCGATAACGAcc  >  1:16222397‑M1/1‑35 (MQ=255)
                                  CCGACAATATCCCACTGACCACGGCGATAACGAcc  <  1:78427‑M1/35‑1 (MQ=255)
                                  |                                  
GCCACCTCTTCCCTCTCATTAAGTCAGATTATCGCCGACAATATCCCACTGACCACGGCGATAACGACC  >  REL606/1760785‑1760853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.