New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 255937 =63 (0.610)13 (0.150) 7/40 NT 22.5% coding (477/1056 nt) dinB DNA polymerase IV
?REL606 3367494 = 37 (0.430)intergenic (‑80/+27) yhdN/rplQ hypothetical protein/50S ribosomal protein L17

ATGCCGGAACTTCTGCCGGCGTAATCACAAACTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/255974‑255937
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCT  >  REL606/3367494‑3367527
                                                                        
tTGCCGGAACTTCTGCCGGCGTAATCACAAACTGG                                       <  1:18200011/34‑1
agGCCGGAACTTCTGCCGGCGTAATCACAAACTGG                                       <  1:12167011/33‑1
ATGCCGGAACTTCTGCCGGCGTAATCACAAACTGG                                       <  1:222899/35‑1
ATGCCGGAACTTCTGCCGGCGTAATCACAAACTGG                                       <  1:17970379/35‑1
ATGCCGGAACTTCTGCCGGCGTAATCACAAACTGG                                       >  1:17867133/1‑35
ATGCCGGAACTTCTGCCGGCGTAATCACAAACTGG                                       <  1:5687298/35‑1
ATGCCGGAACTTCTGCCGGCGTAATCACAAACTGG                                       >  1:12996235/1‑35
ATGCCGGAACTTCTGCCGGCGTAATCACAAACTGG                                       >  1:11404017/1‑35
ATGCCGGAACTTCTGCCGGCGTAATCACAAACTGG                                       <  1:9129625/35‑1
 taCCGGAACTTCTGCCGGCGTAATCACAAACTGGC                                      >  1:19047204/3‑35
 TGCCGGAACTTCTGCCGGCGTAATCACAAACTGGC                                      >  1:20037129/1‑35
 TGCCGGAACTTCTGCCGGCGTAATCACAAACTGGC                                      >  1:11883927/1‑35
 TGCCGGAACTTCTGCCGGCGTAATCACAAACTGGC                                      >  1:2587911/1‑35
  GCCGGAACTTCTGCCGGCGTAATCACAAACTGGCC                                     <  1:10340246/35‑1
  GCCGGAACTTCTGCCGGCGTAATCACAAACTGGCC                                     <  1:16020152/35‑1
  GCCGGAACTTCTGCCGGCGTAATCACAAACTGGCC                                     <  1:9702793/35‑1
  GCCGGAACTTCTGCCGGCGTAATCACAAACTGGCC                                     >  1:14793899/1‑35
  GCCGGAACTTCTGCCGGCGTAATCACAAACTGGCC                                     >  1:5854652/1‑35
  GCCGGAACTTCTGCCGGCGTAATCACAAACTGGCC                                     >  1:14293491/1‑35
   CCGGAACTTCTGCCGGCGTAATCACAAACTGGCCG                                    >  1:1930745/1‑35
   CCGGAACTTCTGCCGGCGTAATCACAAACTGGCCG                                    >  1:17970301/1‑35
    CGGAACTTCTGCCGGCGTAATCACAAACTGGCCGG                                   >  1:16614247/1‑35
    CGGAACTTCTGCCGGCGTAATCACAAACTGGCCGG                                   >  1:7405450/1‑35
    CGGAACTTCTGCCGGCGTAATCACAAACTGGCCGG                                   >  1:4217360/1‑35
    CGGAACTTCTGCCGGCGTAATCACAAACTGGCCGG                                   >  1:17883301/1‑35
     GGAACTTCTGCCGGCGTAATCACAAACTGGCCGGG                                  >  1:17411677/1‑35
     GGAACTTCTGCCGGCGTAATCACAAACTGGCCGGG                                  >  1:15709084/1‑35
     GGAACTTCTGCCGGCGTAATCACAAACTGGCCGGG                                  >  1:8084689/1‑35
      GAACTTCTGCCGGCGTAATCACAAACTGGCCGGGG                                 >  1:10954597/1‑35
      GAACTTCTGCCGGCGTAATCACAAACTGGCCGGGG                                 >  1:6814676/1‑35
       AACTTCTGCCGGCGTAATCACAAACTGGCCGGGGg                                >  1:18597655/1‑34
       AACTTCTGCCGGCGTAATCACAAACTGGCCGGGGg                                >  1:20245313/1‑34
       AACTTCTGCCGGCGTAATCACAAACTGGCCGGGGg                                >  1:2748504/1‑34
       AACTTCTGCCGGCGTAATCACAAACTGGCCGGGGg                                >  1:2002588/1‑34
        ACTTCTGCCGGCGTAATCACAAACTGGCCGGGGgg                               >  1:9933351/1‑33
        ACTTCTGCCGGCGTAATCACAAACTGGCCGGGGgg                               >  1:4569320/1‑33
        ACTTCTGCCGGCGTAATCACAAACTGGCCGGGGgg                               >  1:6705003/1‑33
        ACTTCTGCCGGCGTAATCACAAACTGGCCGGGGgg                               >  1:8065194/1‑33
        ACTTCTGCCGGCGTAATCACAAACTGGCCGGGGgg                               >  1:14009682/1‑33
         CTTCTGCCGGCGTAATCACAAACTGGCCGGGGGGG                              >  1:7907057/1‑35
         CTTCTGCCGGCGTAATCACAAACTGGCCGGGGGGG                              >  1:16182297/1‑35
          TTCTGCCGGCGTAATCACAAACTGGCCGGGGGGGG                             >  1:2118317/1‑35
          TTCTGCCGGCGTAATCACAAACTGGCCGGGGGGGG                             >  1:13294908/1‑35
           TCTGCCGGCGTAATCACAAACTGGCCGGGGGGGGg                            >  1:593729/1‑34
           TCTGCCGGCGTAATCACAAACTGGCCGGGGGGGGT                            >  1:7540865/1‑35
           TCTGCCGGCGTAATCACAAACTGGCCGGGGGGGGT                            >  1:6313059/1‑35
           TCTGCCGGCGTAATCACAAACTGGCCGGGGGGGGT                            >  1:2988450/1‑35
            CTGCCGGCGTAATCACAAACTGGCCGGGGGGGGTg                           >  1:6650613/1‑34
            CTGCCGGCGTAATCACAAACTGGCCGGGGGGGGTT                           >  1:13804474/1‑35
              GCCGGCGTAATCACAAACTGGCCGGGGGGGGTTTT                         >  1:11208643/1‑35
                CGGCGTAATCACAAACTGGCCGGGGGGGGTTTTTT                       >  1:6717212/1‑35
                 GGCGTAATCACAAACTGGCCGGGGGGGGTTTTTTT                      >  1:4005587/1‑35
                                  GCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTAC     <  1:19595732/35‑1
                                  GCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTAC     >  1:11914575/1‑35
                                  GCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTAC     <  1:6218336/35‑1
                                   CCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACT    >  1:4052160/1‑35
                                   CCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACT    <  1:20176470/35‑1
                                   CCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACT    <  1:13568273/35‑1
                                   CCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACT    >  1:19636477/1‑35
                                    CGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTC   <  1:10098887/35‑1
                                    CGGGGCGGGGTTTTTTACGTTGCTTCAGATTACTC   >  1:7259565/1‑35
                                    CGGGGCGGGGTTTTTTACGTTGCTTCAGATTACTC   >  1:5606228/1‑35
                                     GGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCT  <  1:14759536/35‑1
                                     GGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCT  >  1:10278170/1‑35
                                     GGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCT  <  1:17595087/35‑1
                                     GGGGCGGGGTTTTTTACGTTGCTTCAGATTACTCT  >  1:2447313/1‑35
                                                                        
ATGCCGGAACTTCTGCCGGCGTAATCACAAACTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/255974‑255937
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCT  >  REL606/3367494‑3367527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.