New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 217501745 (0.440)18 (0.200) 5/42 NT 24.6% coding (1595/1716 nt) dld D‑lactate dehydrogenase, FAD‑binding, NADH independent
?REL606 = 4351424 71 (0.790)intergenic (+32/‑106) groEL/yjeI chaperonin GroEL/hypothetical protein

Only 100 of 154 total aligned reads displayed.

TAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGT  >  REL606/4351390‑4351458
                                  |                                  
tAATTGCCCTGCACCACGCAGAAATAAACAAAccc                                    <  1:3719606/35‑1 (MQ=255)
 aaTTGCCCTGCACCTCGTAGAAATAAACAAACCCc                                   >  1:15312742‑M2/1‑34 (MQ=255)
 aaTTGCCCTGCACCTCGCAGAAATAAACAAACCCc                                   <  1:19018367‑M2/35‑2 (MQ=255)
 aaTTGCCCTGCACCTCGCAGAAATAAACAAACCCc                                   >  1:18727524‑M2/1‑34 (MQ=255)
 aaTTGCCCTGCACCTCGCAGAAATAAACAAACCCc                                   <  1:5249767‑M2/35‑2 (MQ=255)
  aTTGCCCTGCACCTCGCAGAAATAAACAAACCCcc                                  >  1:14144553‑M2/1‑33 (MQ=255)
   ttGCCCTGCACCTCGCAGAAATAAACAAACCCccg                                 <  1:19610090‑M2/35‑4 (MQ=255)
    tGCCCTGCACCTCGCAGAAGTAAACAAACCCCCgg                                <  1:19552273/35‑1 (MQ=255)
    tGCCCTGCACCTCGCAGAAATAAACAAACCCCCgg                                <  1:2109475/35‑1 (MQ=255)
    tGCCCTGCACCTCGCAGAAATAAACAAACCCCCgg                                <  1:19853680/35‑1 (MQ=255)
    tGCCCTGCACCTCGCAGAAATAAACAAACCCCCgg                                <  1:17612617/35‑1 (MQ=255)
    tGCCCTGCACCTCGCAGAAATAAACAAACCCCCgg                                <  1:15847530/35‑1 (MQ=255)
    tGCCCTGCACCTCGCAGAAATAAACAAACCCCCgg                                <  1:7471612/35‑1 (MQ=255)
     gCCCTGCACCTCGCAGAAATAAACAAACCCCCggg                               <  1:11260750/35‑1 (MQ=255)
     gCCCTGCACCTCGCAGAAATAAACAAACCCCCggg                               <  1:11673515/35‑1 (MQ=255)
     gCCCTGCACCTCGCAGAAATAAACAAACCCCCggg                               >  1:1911742/1‑35 (MQ=255)
     gCCCTGCACCTCGCAGAAATAAACAAACCCCCggg                               <  1:5490656/35‑1 (MQ=255)
      cccTGCACCTCGCAGAAATAAACAAACCCCCGGGc                              >  1:3861618/1‑35 (MQ=255)
      cccTGCACCTCGCAGAAATAAACAAACCCCCGGGc                              <  1:9175767/35‑1 (MQ=255)
      cccTGCACCTCGCAGAAATAAACAAACCCCCGGGc                              >  1:5355189/1‑35 (MQ=255)
       ccTGCACCTCGCAGAAATAAACAAACCCCCGGGCa                             >  1:8022038/1‑35 (MQ=255)
        cTGCACCTCGCAGAAATAAACAAACCCCCTGGCAg                            >  1:18043322/1‑35 (MQ=255)
        cTGCACCTCGCAGAAATAAACAAACCCCCTGGCAg                            >  1:19927132/1‑35 (MQ=255)
        cTGCACCTCGCAGAAATAAACAAACCCCCGTGCAg                            >  1:3499490/1‑35 (MQ=255)
        cTGCACCTCGCAGAAATAAACAAACCCCCGGGCAg                            <  1:20066046/35‑1 (MQ=255)
         tGCACCTCGCAGAAATAAACAAACCCCCGGGCAGa                           >  1:4358324/1‑35 (MQ=255)
         tGCACCTCGCAGAAATAAACAAAACCCCGGGCAGa                           <  1:5965502/35‑1 (MQ=255)
          tcACCTCGCAGAAATAAACAAACCCCCGGGCAGaa                          <  1:13804499/34‑1 (MQ=255)
          gCACCTCGCAGAAATAAACAAACCCCCGGGCAGaa                          <  1:17251317/35‑1 (MQ=255)
          gCACCTCGCAGAAATAAACAAACCCCCGGGCAGaa                          >  1:9411459/1‑35 (MQ=255)
          gCACCTCGCAGAAATAAACAAACCCCCGGGCAGaa                          >  1:1933724/1‑35 (MQ=255)
           cACCTCGCAGAAATAAACAAACCCCCGGGCAGaaa                         <  1:9631241/35‑1 (MQ=255)
           cACCTCGCAGAAATAAACAAACCCCCGGGCAGaaa                         <  1:11413303/35‑1 (MQ=255)
           cACCTCGCAGAAATAAACAAACCCCCGGGCAGaaa                         <  1:8112855/35‑1 (MQ=255)
            aCCTCGCAGAAATAAACAAACCCCCGGGCAGAAAt                        <  1:9085021/35‑1 (MQ=255)
             ccTCGCAGAAATAAACAAACCCCCGGGCAGAAATg                       >  1:11366836/1‑35 (MQ=255)
             ccTCGCAGAAATAAACAAACCCCCGGGCAGAAATg                       <  1:18563053/35‑1 (MQ=255)
             ccTCGCAGAAATAAACAAACCCCCGGGCAGAAATg                       <  1:7305544/35‑1 (MQ=255)
              cTCGCAGAAATAAACAAACCCCCGGGCAGAAATGt                      >  1:17434150/1‑35 (MQ=255)
              cTCGCAGAAATAAACAAACCCCCGGGCAGAAATGt                      <  1:17465321/35‑1 (MQ=255)
               tCGCAGAAATAAACAAACCCCCGGGCAGAAATGTc                     >  1:1046404/1‑35 (MQ=255)
               tCGCAGAAATAAACAAACCCCCGGGCAGAAATGTc                     <  1:11265938/35‑1 (MQ=255)
                cGCAGAAATAAACAAACCCCCGGGCAGAAATGTCt                    <  1:12216057/35‑1 (MQ=255)
                 gCAGAAATAAACAAACCCCCGGGCAGAAATGTCTg                   >  1:161134/1‑35 (MQ=255)
                 gCAGAAATAAACAAACCCCCGGGCAGAAATGTCTg                   <  1:4194053/35‑1 (MQ=255)
                 gCAGAAATAAACAAACCCCCGGGCAGAAATGTCTg                   >  1:1393928/1‑35 (MQ=255)
                 gCAGAAATAAACAAACCCCCGGGCAGAAATGTCTg                   <  1:13879927/35‑1 (MQ=255)
                 gCAGAAATAAACAAACCCCCGGGCAGAAATGTCTg                   <  1:5750399/35‑1 (MQ=255)
                 gCAGAAATAAACAAACCCCCGGGCAGAAATGTCTg                   <  1:20464496/35‑1 (MQ=255)
                  cAGAAATAAACAAACCCCCGGGCAGAAATGTCTgg                  >  1:10146897/1‑35 (MQ=255)
                  cAGAAATAAACAAACCCCCGGGCAGAAATGTCTgg                  <  1:5255068/35‑1 (MQ=255)
                  cAGAAATAAACAAACCCCCGGGCAGAAATGTCTgg                  <  1:350515/35‑1 (MQ=255)
                   aGAAATAAACAAACCCCCGGGCAGAAATGTCTggg                 <  1:4100302/35‑1 (MQ=255)
                    gAAATAAACAAACCCCCGGGCAGAAATGTCTgggg                <  1:3012224/35‑1 (MQ=255)
                    gAAATAAACAAACCCCCGGGCAGAAATGTCTgggg                >  1:7059177/1‑35 (MQ=255)
                    gAAATAAACAAACCCCCGGGCAGAAATGTCTgggg                >  1:17714047/1‑35 (MQ=255)
                    gAAATAAACAAACCCCCGGGCAGAAATGTCTgggg                >  1:9538502/1‑35 (MQ=255)
                     aaaTAAACAAACCCCCGGGCAGAAATGTCTggggg               <  1:8934843/35‑1 (MQ=255)
                     aaaTAAACAAACCCCCGGGCAGAAATGTCTggggg               >  1:5678040/1‑35 (MQ=255)
                       taaaacaaacccccgacgttatgctcggcagggta             >  1:9718289‑M2/3‑12 (MQ=255)
                        tAAACAAACCCCCGGGCAGAAATGTCTGGGGGttt            >  1:18586768/1‑35 (MQ=255)
                        tAAACAAACCCCCGGGCAGAAATGTCTGGGGGttt            >  1:17209390/1‑35 (MQ=255)
                        tAAACAAACCCCCGGGCAGAAATGTCTGGGGGttt            <  1:12016518/35‑1 (MQ=255)
                        tAAAAAAACCCccgacgttatgctcggcagggtac            >  1:19259092‑M2/1‑11 (MQ=255)
                         aaacaaccCCccgacgttatgctcggcagggtact           >  1:17978284‑M2/1‑10 (MQ=255)
                         aaacaaacCCccgacgttatgctcggcagggtact           >  1:6130990‑M2/1‑10 (MQ=255)
                         aaacaaacCCccgacgttatgctaggcagggtact           >  1:19566853‑M2/1‑10 (MQ=255)
                         aaacaaacCCCCGGGCAGAAATGTCTGGGGGtttt           <  1:2410642/35‑1 (MQ=255)
                         aaacaaacCCCCGGGCAGAAATGTCTGGGGGtttt           >  1:19686969/1‑35 (MQ=255)
                         aaaaaaacCCccgacgttatgctcggcagggtact           >  1:10724678‑M2/1‑10 (MQ=255)
                          aacaaacCCCCGGGCAGAAATGTCTGGGGGttttt          >  1:10320146/1‑35 (MQ=255)
                          aacaaacCCCCGGGCAGAAATGTCTGGGGGttttt          <  1:14708054/35‑1 (MQ=255)
                           acaagcCCccgacgttatgctcggcagggtactgc         >  1:13438375‑M2/1‑8 (MQ=255)
                           acaaacCCCCGGGCAGAAATGTCTGGGGGTTTTTc         >  1:12759200/1‑35 (MQ=255)
                           aaaaacccccgacgttatgctcggcagggtactgc         >  1:1784548‑M2/3‑8 (MQ=255)
                            caaacCCCCGGGCAGAAATGTCTGGGGGTTTTTCt        <  1:12453575/35‑1 (MQ=255)
                            caaacCCCCGGGCAGAAATGTCTGGGGGTTTTTCt        <  1:13066436/35‑1 (MQ=255)
                            caaacCCCCGGGCAGAAATGTCTGGGGGGTTTTCt        >  1:16401561/1‑35 (MQ=255)
                             aaccCCccgacgttatgctcggcagggtactgcgc       >  1:10700903‑M2/1‑6 (MQ=255)
                             aaccCCccgacgttatgctcggcagggtactgcgc       >  1:1836624‑M2/1‑6 (MQ=255)
                             aaacCCccgacgttatgctcggcagggtactgcgc       >  1:14629470‑M2/1‑6 (MQ=255)
                             aaacCCccgacgttatgctcggcagggtactgcgc       >  1:15252824‑M2/1‑6 (MQ=255)
                             aaacCCCCGGGCAGAAATGTCTGGGGGTTTTTCtt       <  1:1420451/35‑1 (MQ=255)
                             aaacCCCCGGGCAGAAATGTCTGGGGGTTTTTCtt       <  1:16726644/35‑1 (MQ=255)
                             aaacCCCCGGGCAGAAATGTCTGGGGGTTTTTCtt       <  1:3103109/35‑1 (MQ=255)
                             aaacCCCCGGGCAGAAATGTCTGGGGGTTTTTCtt       <  1:20004164/35‑1 (MQ=255)
                             aaacCCCCGGGCAGAAATGTCTGGGGGTTTTTCtt       <  1:749950/35‑1 (MQ=255)
                              aacCCCCGGGCAGAAATGTCTGGGGGTTTTTCttt      <  1:12394121/35‑1 (MQ=255)
                               cgccccgacgttatgctcggcagggtactgcgcgc     >  1:10060314‑M2/3‑4 (MQ=255)
                               acCCCCGGGCAGAAATGTCTGGGGGTTTTTCtttt     <  1:3759054/35‑1 (MQ=255)
                               acCCCCGGGCAGAAATGTCTGGGGGTTTTTCtttt     <  1:986068/35‑1 (MQ=255)
                               acCCCAGGGCAGAAATGTCTGGGGGTTTTTCtttt     <  1:16258250/35‑1 (MQ=255)
                                cccccgacgttatgctcggcagggtactgcgcgcc    >  1:4003540‑M2/1‑3 (MQ=255)
                                cccccGGGCAGAAATGTCTGGGGGTTTTTCTTTTg    >  1:8430976/1‑35 (MQ=255)
                                cacccGGGCAGAAATGTCTGGGGGTTTTTCTTTTg    <  1:11883228/33‑1 (MQ=255)
                                 ccccgacgttatgctcggcagggtactgcgcgccg   >  1:14213556‑M2/1‑2 (MQ=255)
                                 ccccgacgttatgctcggcagggtactgcgcgccg   >  1:11647137‑M2/1‑2 (MQ=255)
                                 ccccGGGCAGAAATGTCTGGGGGTTTTTCTTTTgg   >  1:11829115/1‑35 (MQ=255)
                                  cccGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGt  >  1:9033324/1‑35 (MQ=255)
                                  cccGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGt  <  1:1231017/35‑1 (MQ=255)
                                  |                                  
TAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGT  >  REL606/4351390‑4351458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.