New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2698091 =73 (0.710)6 (0.070) 3/40 NT 9.3% coding (1992/2145 nt) nrdE ribonucleotide‑diphosphate reductase alpha subunit
?REL606 3668825 = 56 (0.650)coding (873/2031 nt) malS periplasmic alpha‑amylase precursor

TGATATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2698128‑2698091
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcCGATCTACGGACGCTGGTTGATAGCGCACATCAG  >  REL606/3668825‑3668858
                                                                        
TGATATCGCGAGTGGTGGCGGTATCGGGGAAAAAA                                       <  1:3303525/35‑1
TGATATCGCGAGTGGTGGCGGTATCGGGGAAAAAA                                       <  1:18930898/35‑1
TGATATCGCGAGTGGTGGCGGTATCGGGGAAAAAA                                       <  1:18069239/35‑1
 GATATCGCGAGTGGTGGCGGTATCGGGGAAAAAAA                                      <  1:11112280/35‑1
 GATATCGCGAGTGGTGGCGGTATCGGGGAAAAAAA                                      <  1:19958493/35‑1
 GATATCGCGAGTGGTGGCGGTATCGGGGAAAAAAA                                      <  1:16757384/35‑1
  nTATCNCGAGTGGTGGCGGTATCGGGGAAAAAAAG                                     <  1:17894901/34‑1
   TATGGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC                                    <  1:6815282/35‑1
   TATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC                                    <  1:81503/35‑1
   TATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC                                    <  1:6927405/35‑1
   TATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC                                    <  1:6813905/35‑1
   TATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC                                    <  1:14911576/35‑1
   TATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC                                    <  1:15139588/35‑1
                      ataGGGGAAAAAAAGCCGATCTACGGACGCTGGTT                 <  1:3875278/32‑1
                        gGGGGCAAAAAAGCCGATCTACGGACGCTGGTTGA               <  1:15571958/34‑1
                         tGGGAAAAAAAGCCGATCTACGGACGCTGGTTGAT              <  1:2190693/34‑1
                         GGGGAAAAAAAGCCGATCTACGGACGCTGGTTGAT              <  1:2921361/35‑1
                          ggaAAAAAAAGCCGATCTACGGACGCTGGTTGATA             <  1:4541546/32‑1
                          GGGCAAAAAAGCCGATCTACGGACGCTGGTTGATA             <  1:9937222/35‑1
                            cAAAGAAAGCCGATCTACGGACGCTGGTTGATAGC           <  1:16148801/34‑1
                            acAAAAAAGCCGATCTACGGACGCTGGTTGATAGC           <  1:18402055/33‑1
                            aAAAAAAAGCCGATCTACGGACGCTGGTTGATAGC           <  1:16328580/34‑1
                            aAAAAAAAGCCGATCTACGGACGCTGGTTGATAGC           <  1:17736070/34‑1
                            GAAAAAAAGCCGATCTACGGACGCTGGTTGATAGC           <  1:13022735/35‑1
                              AAAAAAGCCGATCTACGGACGCTGGTTGATAGCGC         <  1:509860/35‑1
                               acAAAGCCGATCTACGGACGCTGGTTGATAGCGCA        <  1:7022865/33‑1
                               AAAAAGCCGATCTACGGACGCTGGTTGATAGCGCA        <  1:5561833/35‑1
                                cAAAGCCGATCTACGGACGCTGGTTGATAGCGCAC       <  1:5676354/34‑1
                                AAAAGCCGATCTACGGACGCTGGTTGATAGCGCAC       <  1:5344334/35‑1
                                AAAAGCCGATCTACGGACGCTGGTTGATAGCGCAC       <  1:8654633/35‑1
                                AAAAGCCGATCTACGGACGCTGGTTGATAGCGCAC       <  1:13597825/35‑1
                                 AAAGCCGATCTACGGACGCTGGTTGATAGCGCACA      <  1:6989485/35‑1
                                 AAAGCCGATCTACGGACGCTGGTTGATAGCGCACA      <  1:4659174/35‑1
                                 AAAGCCGATCTACAGACGCTGGTTGATAGCGCACA      <  1:5730130/35‑1
                                  AAGCCGATCTACGGACGCTGGTTGATAGCGCACAT     >  1:8590450/1‑35
                                   AGCCGATCTACGGACGCTGGTTGATAGCGCACATC    >  1:14541082/1‑35
                                   AGCCGATCTACGGACGCTGGTTGATAGCGCACATC    <  1:6930891/35‑1
                                   AGCAGATCTACGGACGCTGGTTGATAGCGCACATC    <  1:2210592/35‑1
                                    GCCGATCTACGGACGCTTGTTGATAGCGCACATCA   >  1:6957692/1‑35
                                    GCCGATCTACGGACGCTGGTTGATAGCGCACCTCA   >  1:15895738/1‑35
                                    GCCGATCTACGGACGCTGGTTGATAGCGCACATCA   <  1:13052591/35‑1
                                    GCCGATCTACGGACGCTGGTTGATAGCGCACATCA   >  1:1268475/1‑35
                                    GCCGATCTACGGACGCTGGTTGATAGCGCACATCA   <  1:11179803/35‑1
                                    GCCGATCTACGGACGATGGTTGATAGCGCACATCA   <  1:16298117/35‑1
                                     CCGATCTACGGACGCTGGTTGATAGCGCACATCAG  >  1:16468031/1‑35
                                     CCGATCTACGGACGCTGGTTGATAGCGCACATCAG  <  1:9120566/35‑1
                                     CCGATCTACGGACGCTGGTTGATAGCGCACATCAG  <  1:18424523/35‑1
                                     CCGATCTACGGACGCTGGTTGATAGCGCACATCAG  <  1:16054077/35‑1
                                     CCGATCTACGGACGCTGGTTGATAGCGCACATCAG  >  1:20040754/1‑35
                                     CCGATCTACGGACGCTGGTTGATAGCGCACATCAG  <  1:13839499/35‑1
                                     CCGATCTACGGACGCTGGTTGATAGCGCACATCAG  <  1:3730529/35‑1
                                     CCGATCTACGGACGCTGGTTGATAGCGCACATCAG  >  1:3822356/1‑35
                                                                        
TGATATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2698128‑2698091
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcCGATCTACGGACGCTGGTTGATAGCGCACATCAG  >  REL606/3668825‑3668858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.