New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)108 (1.150) 38/44 NT 100% noncoding (1/1443 nt) IS150 repeat region
?REL606 1270660 = 0 (0.000)intergenic (‑167/+238) ldrC/chaA toxic polypeptide, small/calcium/sodium:proton antiporter

Only 100 of 171 total aligned reads displayed.

CCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGATAATTCCGGCTTGGTGTGGATACTACTTCT  >  REL606/1270627‑1270694
                                 |                                  
catttcatcgtccaacaaaatgggtgcggtacact                                   <  1:18282339‑M2/2‑2 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacacttt                                 <  1:17537838‑M2/4‑4 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacacttt                                 <  1:14629445‑M2/4‑4 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacacttt                                 >  1:3269993‑M2/32‑32 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacacttt                                 <  1:20417342‑M2/4‑4 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacactct                                 <  1:16271888‑M2/4‑4 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacaCCgg                                 <  1:8679949‑M2/4‑1 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaGcggt                                >  1:1235745‑M2/31‑34 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaGcggg                                >  1:510941‑M2/31‑34 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaCCGGa                                <  1:4154275‑M2/5‑1 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaCCGGa                                <  1:18551158‑M2/5‑1 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaCCGGa                                <  1:2268160‑M2/5‑1 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaCCGGa                                >  1:18781513‑M2/31‑35 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaCCGGAt                               >  1:1383778‑M2/30‑35 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaCCGGATa                              <  1:15704988‑M2/7‑1 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaCCGGATa                              <  1:20552583‑M2/7‑1 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaCCGGATa                              >  1:2978503‑M2/29‑35 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaCCGGATa                              <  1:3317655‑M2/7‑1 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaCCGGATa                              >  1:678557‑M2/29‑35 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaCCGGATaa                             <  1:368605‑M2/8‑1 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaCCGGATaa                             >  1:18011711‑M2/28‑35 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaCCGGATaa                             >  1:5553559‑M2/28‑35 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaCCGGATaa                             >  1:975130‑M2/28‑35 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaCCGGATaa                             <  1:15445427‑M2/8‑1 (MQ=255)
       tcgtccaacaaaatgggtgcagtacaCCGGATAAt                            <  1:10945686‑M2/9‑1 (MQ=255)
       tcgtccaacaaaatgggtgcagtacaCCGGATAAt                            >  1:2567517‑M2/27‑35 (MQ=255)
        cgtccaacaaaatgggtgcagtacaCCGGATAAtt                           >  1:17262838‑M2/26‑35 (MQ=255)
        cgtccaacaaaatgggtgcagtacaCCGGATAAtt                           <  1:1749754‑M2/10‑1 (MQ=255)
        cgtccaacaaaatgggtgcagtacaCCGGATAAtt                           >  1:18177070‑M2/26‑35 (MQ=255)
        cgtccaacaaaatgggtgcagtacaCCGGATAAtt                           >  1:11197589‑M2/26‑35 (MQ=255)
          tccaacaaaatgggtgcagtacaCCGGATAATTcc                         <  1:7208432‑M2/12‑1 (MQ=255)
          tccaacaaaatgggtgcagtacaCCGGATAATTcc                         >  1:7170847‑M2/24‑35 (MQ=255)
          tccaacaaaatgggtgcagtacaCCGGATAATTcc                         <  1:8349301‑M2/12‑1 (MQ=255)
           ccaacaaaatgggtgcagtacaCCGGATAATTCCg                        <  1:17062495‑M2/13‑1 (MQ=255)
            caacaaaatgggtgcagtacaCCGGATAATTCCgg                       <  1:20132584‑M2/14‑1 (MQ=255)
            caacaaaatgggtgcagtacaCCGGATAATTCCgg                       <  1:7659600‑M2/14‑1 (MQ=255)
            caacaaaatgggtgcagtacaCCGGATAATTCCgg                       <  1:7007245‑M2/14‑1 (MQ=255)
             aacaaaatgggtgcagtacaCCGGATAATTCCGGc                      <  1:6621624‑M2/15‑1 (MQ=255)
             aacaaaatgggtgcagtacaCCGGATAATTCCGGc                      <  1:17821221‑M2/15‑1 (MQ=255)
             aacaaaatgggtgcagtacaCCGGATAATTCCGGc                      <  1:6294223‑M2/15‑1 (MQ=255)
                aaaatgggtgcagtacaCCGGATAATTCCGGCTTg                   >  1:17109919‑M2/18‑35 (MQ=255)
                aaaatgggtgcagtacaCCGGATAATTCCGGCTTg                   >  1:6453919‑M2/18‑35 (MQ=255)
                aaaatgggtgcagtacaCCGGATAATTCCGGCTTg                   <  1:1983338‑M2/18‑1 (MQ=255)
                 aaatgggtgcagtacaCCGGGTAATTCCGGCTTgg                  >  1:17549817‑M2/17‑35 (MQ=255)
                 aaatgggtgcagtacaCCGGATAATTCCGGCTTgg                  <  1:6565498‑M2/19‑1 (MQ=255)
                 aaatgggtgcagtacaCCGGATAATTCCGGCTTgg                  >  1:13185734‑M2/17‑35 (MQ=255)
                 aaatgggtgcagtacaCCGGATAATTCCGGCTTgg                  >  1:9001359‑M2/17‑35 (MQ=255)
                 aaatgggtgcagtacaCCGGATAATTCCGGCTTgg                  <  1:14548795‑M2/19‑1 (MQ=255)
                  aatgggtgcagtacaCCGGATAATTCCGGCTtggg                 >  1:18751154‑M2/16‑34 (MQ=255)
                  aatgggtgcagtacaCCGGATAATTCCGGCTTGgt                 >  1:8097429‑M2/16‑35 (MQ=255)
                  aatgggtgcagtacaCCGGATAATTCCGGCTTGgt                 <  1:10205608‑M2/20‑1 (MQ=255)
                  aatgggtgcagtacaCCGGATAATTCCGGCTTGgt                 >  1:15066881‑M2/16‑35 (MQ=255)
                  aatgggtgcagtacaCCGGATAATTCCGGCTTGgt                 >  1:12179022‑M2/16‑35 (MQ=255)
                  aatgcgtgcagtacaCCGGATAATTCCGGCTtggg                 >  1:802275‑M2/16‑34 (MQ=255)
                   atgggtgcagtacaCCGGATAATTCCGGCTTGgtg                >  1:6103302‑M2/15‑35 (MQ=255)
                   atgggtgcagtacaCCGGATAATTCCGGCTTGgtg                <  1:5783868‑M2/21‑1 (MQ=255)
                   atgggtgcagtacaCCGGATAATTCCGGCTTGgtg                <  1:4062927‑M2/21‑1 (MQ=255)
                   atgggtgcagtacaCCGGATAATTCCGGCTTGgtg                >  1:340341‑M2/15‑35 (MQ=255)
                   atgggtgcagtacaCCGGATAATTCCGGCTTGgtg                >  1:19541705‑M2/15‑35 (MQ=255)
                   atgggtgcagtacaCCGGATAATTCCGGCTTGgtg                <  1:20139482‑M2/21‑1 (MQ=255)
                   atgggtgcagtacaCCGGATAATTCCGGCTTGgtg                <  1:18315716‑M2/21‑1 (MQ=255)
                    tgggtgcagtacaCCGGATAATTCCGGCTTGgtgt               <  1:13438295‑M2/22‑1 (MQ=255)
                     gggtgcagtacaCCGGATAATTCCGGCTTGGtgtg              >  1:18170710‑M2/13‑35 (MQ=255)
                     gggtgcagtacaCCGGATAATTCCGGCTTGGtgtg              >  1:3856966‑M2/13‑35 (MQ=255)
                     gggtgcagtacaCCGGATAATTCCGGCTTGGtgtg              >  1:2391376‑M2/13‑35 (MQ=255)
                     gggtgcagtacaCCGGATAATTCCGGCTTGGtgtg              <  1:17827641‑M2/23‑1 (MQ=255)
                     gggtgcagtacaCCGGATAATTCCGGCTTGGtgtg              <  1:846321‑M2/23‑1 (MQ=255)
                      ggtgcagtacaCCGGATAATTCCGGCTTGGTGTgg             >  1:10605788‑M2/12‑35 (MQ=255)
                      ggtgcagtacaCCGGATAATTCCGGCTTGGTGTgg             >  1:4435274‑M2/12‑35 (MQ=255)
                      ggtgcagtacaCCGGATAATTCCGGCTTGGTGTgg             >  1:20482087‑M2/12‑35 (MQ=255)
                      ggtgcagtacaCCGGATAATTCCGGCTTGGTGGgg             >  1:4908476‑M2/12‑35 (MQ=255)
                       gtgcagtacaCCGGATAATTCCGGCTTGGTGTGGa            >  1:11913242‑M2/11‑35 (MQ=255)
                        tgcagtacaCCGGATAATTCCGGCTTGGTGTGGAt           <  1:862105‑M2/26‑1 (MQ=255)
                        tgcagtacaCCGGATAATTCCGGCTTGGTGTGGAt           <  1:3350485‑M2/26‑1 (MQ=255)
                         gcagtacaCCGGATAATTCCGGCTTGGTGTGGAta          >  1:4685905‑M2/9‑35 (MQ=255)
                         gcagtacaCCGGATAATTCCGGCTTGGTGTGGAta          >  1:14335424‑M2/9‑35 (MQ=255)
                          cagtacaCCGGATAATTCCGGCTTGGTGTGGataa         >  1:18501852‑M2/8‑34 (MQ=255)
                          cagtacaCCGGATAATTCCGGCTTGGTGTGGAtac         <  1:7292399‑M2/28‑1 (MQ=255)
                          cagtacaCCGGATAATTCCGGCTTGGTGTGGAtac         <  1:15734204‑M2/28‑1 (MQ=255)
                          cagtacaCCGGATAATTCCGGCTTGGTGTGGAtac         <  1:1887257‑M2/28‑1 (MQ=255)
                           agtacaCCGGATAATTCCGGCTTGGTGTGgataat        >  1:4622263‑M2/7‑33 (MQ=255)
                           agtacaCCGGATAATTCCGGCTTGGTGTGGAtact        <  1:5146998‑M2/29‑1 (MQ=255)
                           agtacaCCGGATAATTCCGGCTTGGTGTGGAtact        <  1:16830005‑M2/29‑1 (MQ=255)
                           agtacaCCGGATAATTCCGGCTTGGTGTGGAtact        <  1:7615753‑M2/29‑1 (MQ=255)
                            gtacaCCGGATAATTCCGGCTTGGTGTggataaca       >  1:7131516‑M2/6‑32 (MQ=255)
                            gtacaCCGGATAATTCCGGCTTGGTGTggataaaa       >  1:8704509‑M2/6‑32 (MQ=255)
                            gtacaCCGGATAATTCCGGCTTGGTGTGGAtacta       <  1:10103181‑M2/30‑1 (MQ=255)
                            gtacaCCGGATAATTCCGGCTTGGTGTGGAtacta       <  1:11886850‑M2/30‑1 (MQ=255)
                            gtacaCCGGATAATTCCGGCTTGGTGTGGAtaata       >  1:2819396‑M2/6‑35 (MQ=255)
                             tacaCCGGATAATTCCGGCTTGGTGTGGataatag      >  1:5519654‑M2/5‑34 (MQ=255)
                             tacaCCGGATAATTCCGGCTTGGTGTGGAtactac      >  1:16252567‑M2/5‑35 (MQ=255)
                              acaCCGGATAATTCCGGCTTGGTGTGGATactact     <  1:12997198‑M2/32‑1 (MQ=255)
                              acaCCGGATAATTCCGGCTTGGTGTGGATaatact     >  1:5210222‑M2/4‑35 (MQ=255)
                               caCCGGATAATTCCGGCTTGGTGTGGATAATACtt    >  1:6243702‑M2/3‑35 (MQ=255)
                                aCCGGATAATTCCGGCTTGGTGTGGATACTACTTc   >  1:346822‑M2/2‑35 (MQ=255)
                                aCCGGATAATTCCGGCTTGGTGTGGATACTACTTc   <  1:12815927‑M2/34‑1 (MQ=255)
                                aCCGGATAATTCCGGCTTGGTGTGGATACTACTTc   <  1:11300825‑M2/34‑1 (MQ=255)
                                aCCGGATAATTCCGGCTTGGTGTGGATAATAAtt  >  1:12653557/1‑34 (MQ=1)
                                 ccGGATAATTCCGGCTTGGTGTGGATACTACTtct  <  1:17794243/35‑1 (MQ=38)
                                 ccGGATAATTCCGGCTTGGTGTGGATACTACTtct  <  1:15308338/35‑1 (MQ=38)
                                 |                                  
CCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGATAATTCCGGCTTGGTGTGGATACTACTTCT  >  REL606/1270627‑1270694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.