New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 197907688 (0.860)10 (0.110) 4/44 NT 14.7% coding (595/636 nt) yedZ hypothetical protein
?REL606 = 2901067 35 (0.370)coding (153/579 nt) ygfJ hypothetical protein

TGCAGTTTTGTAGCCGAATTATTTTAGTCACCGGCTATCGTGGTAATGAACTGCACGAACGTTATGCGA  >  REL606/2901033‑2901101
                                  |                                  
tGCAGTTTTGTAGCCGAATTATTTTAGTCACCGGc                                    <  1:4387774/35‑1 (MQ=255)
tGCAGTTTTGTAGCCGAATTATTTTAGTCACCGGc                                    <  1:4907023/35‑1 (MQ=255)
tGCAGTTTTGTAGCCGAATTATTTTAGTCACCGGc                                    >  1:2307997/1‑35 (MQ=255)
tGCAGTTTTGTAGCCGAATTATTTTAGTCACCGGc                                    >  1:2826443/1‑35 (MQ=255)
 gCAGTTTTGTAGCCGAATTATTTTAGTCACCGGCt                                   >  1:13941183‑M2/1‑34 (MQ=255)
 gCAGTTTTGTAGCCGAATTATTTTAGTCACCGGCt                                   >  1:8967712‑M2/1‑34 (MQ=255)
  cATTTTTGTAGCCGAATTATTTTAGTCACCGGCta                                  >  1:12255432‑M2/1‑33 (MQ=255)
  cATTTTTGTAGCCGAATTATTTTAGTCACCGGCta                                  >  1:14975822‑M2/1‑33 (MQ=255)
  cAGTTTTGTAGCCGAATTATTTTAGTCACCGGCta                                  <  1:10852697‑M2/35‑3 (MQ=255)
  cAGTTTTGTAGCCGAATTATTTTAGTCACCGGCta                                  <  1:15248742‑M2/35‑3 (MQ=255)
   atttttGTAGCCGAATTATTTTAGTCACCGGCTAt                                 <  1:11666647/33‑1 (MQ=255)
   aGTTTTGTAGCCGAATTATTTTAGTCACCTGCTAt                                 >  1:3244613/1‑35 (MQ=255)
   aGTTTTGTAGCCGAATTATTTTAGTCACCGGCTAt                                 <  1:16030967/35‑1 (MQ=255)
   aGTTTTGTAGCCGAATTATTTTAGTCACCGGCTAt                                 <  1:20577451/35‑1 (MQ=255)
   aGTTTTGTAGCCGAATTATTTTAGTCACCGGCTAt                                 <  1:13427622/35‑1 (MQ=255)
    gTTTTGTAGCCGAATTATTTTAGTCACCGGCtaaa                                <  1:14861041‑M2/35‑5 (MQ=255)
    gTTTTGTAGCCGAATTATTTTAGTCACCGGCtaaa                                <  1:5579813‑M2/35‑5 (MQ=255)
    gTTTTGTAGCCGAATTATTTTAGTCACCGGCTATc                                <  1:7027191/35‑1 (MQ=255)
    gTTTTGTAGCCGAATTATTTTAGTCACCGGCTATc                                <  1:20271366/35‑1 (MQ=255)
    gTTTTGTAGCAGAATTATTTTAGTCACCGGCTATc                                <  1:8129797/35‑1 (MQ=255)
     ttttGTAGCCGAATTATTTTAGTCACCGGCtaaag                               <  1:11713726‑M2/35‑6 (MQ=255)
     ttttGTAGCCGAATTATTTTAGTCACCGGCtaaaa                               <  1:19725020‑M2/35‑6 (MQ=255)
     ttttGTAGCCGAATTATTTTAGTCACCGGCTATCg                               <  1:3011799/35‑1 (MQ=255)
      tttTTAGCCGAATTATTTTAGTCACCGGCTATCGt                              <  1:1710778/35‑1 (MQ=255)
      tttGTAGCCGAATTATTTTAGTCACCGGCtaaaaa                              <  1:1111063‑M2/35‑7 (MQ=255)
      tttGTAGCCGAATTATTTTAGTCACCGGCtaaaaa                              <  1:1665787‑M2/35‑7 (MQ=255)
      tttGTAGCCGAATTATTTTAGTCACCGGCTATCGt                              <  1:19421579/35‑1 (MQ=255)
      tttGTAGCCGAATTATTTTAGTCACCGGCTATCGt                              <  1:701223/35‑1 (MQ=255)
       ttttAGCCGAATTATTTTAGTCACCGGCTATCGTg                             <  1:2321485/32‑1 (MQ=255)
       ttGTAGCCGAATTATTTTAGTCACCGGCtaaaatg                             <  1:4828729‑M2/35‑8 (MQ=255)
       ttGTAGCCGAATTATTTTAGTCACCGGCtaaaagg                             <  1:12824940‑M2/35‑8 (MQ=255)
       ttGTAGCCGAATTATTTTAGTCACCGGCtaaaaag                             <  1:4818637‑M2/35‑8 (MQ=255)
       ttGTAGCCGAATTATTTTAGTCACCGGCTATCGTg                             <  1:8732321/35‑1 (MQ=255)
       ttGTAGCCGAATTATTTTAGTCACCGGCTATCGTg                             <  1:13243991/35‑1 (MQ=255)
        tGTAGCCGAATTATTTTAGTCACCGGCtaaaaagg                            <  1:4385582‑M2/35‑9 (MQ=255)
        tGTAGCCGAATTATTTTAGTCACCGGCTATCGTgg                            <  1:9287761/35‑1 (MQ=255)
         gTAGCCGAATTATTTTAGTCACCGGCtaaaaaggg                           <  1:8996305‑M2/35‑10 (MQ=255)
         gTAGCCGAATTATTTTAGTCACCGGCtaaaaaggg                           <  1:2459916‑M2/35‑10 (MQ=255)
          tAGCCGAATTATTTTAGTCACCGGCtaaaaaggga                          <  1:6615575‑M2/35‑11 (MQ=255)
          tAGCCGAATTATTTTAGTCACCGGCTATCGTGGTa                          <  1:16270993/35‑1 (MQ=255)
          tAGCCGAATTATTTTAGTCACCGGCTATCGTGGTa                          <  1:20596136/35‑1 (MQ=255)
          tAGCCGAATTATTTTAGTCACCGGCTATCGTGGTa                          <  1:10608418/35‑1 (MQ=255)
           aGCCGAATTATTTTAGTCACCGGCtaaaaagggaa                         <  1:3980888‑M2/35‑12 (MQ=255)
           aGCCGAATTATTTTAGTCACCGGCtaaaaagggaa                         <  1:6396260‑M2/35‑12 (MQ=255)
           aGCCGAATTATTTTAGTCACCGGCtaaaaagagaa                         <  1:4204236‑M2/35‑12 (MQ=255)
            gCCGAATTATTTTAGTCACCGGCtaaaaatggaaa                        <  1:16202595‑M2/35‑13 (MQ=255)
            gCCGAATTATTTTAGTCACCGGCtaaaaagggaat                        <  1:248279‑M2/35‑13 (MQ=255)
            gCCGAATTATTTTAGTCACCGGCtaaaaagggaaa                        <  1:8341456‑M2/35‑13 (MQ=255)
            gCCGAATTATTTTAGTCACCGGCTAAAGTGGTAAt                        >  1:14672557/1‑35 (MQ=37)
             ccGAATTATTTTAGTCACCGGCTATCGTGGTAATg                       <  1:19989199/35‑1 (MQ=255)
              cGAATTATTTTAGTCACCGGCTATCGTGGTAATGa                      <  1:2386115/35‑1 (MQ=255)
              cGAATTATTTTAGTCACCGGATATCGTGGTAATGa                      <  1:5728053/35‑1 (MQ=255)
               gAATTATTTTAGTCACCGGCTATCGTGGTAATGaa                     <  1:14621561/35‑1 (MQ=255)
               gAATTATTTTAGTCACCGGCTATCGTGGTAATGaa                     <  1:14625084/35‑1 (MQ=255)
                aaTTATTTTAGTCACCGGCTATCGTGGTAATGAAc                    <  1:2685523/35‑1 (MQ=255)
                 attattTTAGTCACCGGCTATCGTGGTAATGAACt                   <  1:4646898/35‑1 (MQ=255)
                 attattTTAGTCACCGGCTATCGTGGTAATGAACt                   <  1:1014496/35‑1 (MQ=255)
                 attattTTAGTCACCGGCTATCGTGGTAATGAACt                   <  1:2231349/35‑1 (MQ=255)
                 attattTTAGTCACCGGCTATCGTGGTAATGAACt                   <  1:17964100/35‑1 (MQ=255)
                 attattTTAGTCACCGGCTATCGTGGTAATGAACt                   <  1:18943576/35‑1 (MQ=255)
                  ttattTTAGTCACCGGCTATCGTGGTAATGAACTg                  <  1:7569052/35‑1 (MQ=255)
                  ttattTTAGTCACCGGCTATCGTGGTAATGAACTg                  <  1:1796405/35‑1 (MQ=255)
                  ttattTTAGTCACCGGCTATCGTGGTAATGAACTg                  <  1:498166/35‑1 (MQ=255)
                   tattTTAGTCACCGGCTATCGTGGTAATGAACTGc                 <  1:12125326/35‑1 (MQ=255)
                    attTTAGTCACCGGCTATCGTGGTAATGAACTGCn                <  1:6507783/35‑1 (MQ=255)
                    attTTAGTCACCGGCTATCGTGGTAATGAACTGCa                <  1:17515719/35‑1 (MQ=255)
                      tttAGTCACCGGCTATCGTGGTAATGAACTGCACg              <  1:13486115/35‑1 (MQ=255)
                      tttAGTCACCGGCTATCGTGGTAATGAACTGCACg              <  1:16610774/35‑1 (MQ=255)
                       ttAGTCACCGGCTATCGTGGTAATGAACTGCACGa             <  1:14282262/35‑1 (MQ=255)
                         aGTCACCGGCTATCGTGGTAATGAACTGCACGAAc           <  1:447566/35‑1 (MQ=255)
                         aGTCACCGGCTATAGTGGTAATGAACTGCACGAAc           <  1:17848988/35‑1 (MQ=255)
                          gTCACCGGCTATCGTGGTAATGAACTGCACGAACg          <  1:6758474/35‑1 (MQ=255)
                          gTCACCGGCTATCATGGTAATGAACTGCACGAACg          <  1:2733418/35‑1 (MQ=255)
                           tCACCGGCTATCGTGGTAATGAACTGCACGAACGt         <  1:17672693/35‑1 (MQ=255)
                            cACCGGCTATCGTGGTAATGAACTGCACGAACGtt        <  1:15764713/35‑1 (MQ=255)
                            cACCGGCTATCGTGGTAATGAACTGCACGAACGtt        <  1:15813961/35‑1 (MQ=255)
                            cACCGGCTATCGTGGTAATGAACTGCACGAACGtt        <  1:5231004/35‑1 (MQ=255)
                             aCCGGCTATCGTGGTAATGAACTGCACGAACGTTa       <  1:9958005/35‑1 (MQ=255)
                             aCCGGCTATCGTGGTAATGAACTGCACGAACGTTa       <  1:5813318/35‑1 (MQ=255)
                              ccGGCTATCGTGGTAATGAACTGCACGAACGTTAt      <  1:8512989/35‑1 (MQ=255)
                              ccGGCTATCGTGGTAATGAACTGCACGAACGTTAt      <  1:15069228/35‑1 (MQ=255)
                              ccGGCTATCGTGGTAATGAACTGCACGAACGTTAt      <  1:7967334/35‑1 (MQ=255)
                               cGGCTATCGTGGTAATGAACTGCACGAACGTTATg     <  1:2568809/35‑1 (MQ=255)
                               aggCTATCGTGGTAATGAACTGCACGAACGTTATg     <  1:12481942/34‑1 (MQ=255)
                                ggCTATCGTGGTAATGAACTGCACGAACGTTATGc    <  1:4037725/35‑1 (MQ=255)
                                ggCTATCGTGGTAATGAACTGCACGAACGTTATGc    <  1:18897091/35‑1 (MQ=255)
                                ggCTATCGTGGTAATGAACTGCACGAACGTTATGc    <  1:11805539/35‑1 (MQ=255)
                                gccTATCGTGGTAATGAACTGCACGAACGTTATGc    <  1:11887846/33‑1 (MQ=255)
                                 gCTATCGTGGTAATGAACTGCACGAACGTTATGCg   >  1:4241112/1‑35 (MQ=255)
                                 gCTATCGTGGTAATGAACTGCACGAACGTTATGCg   >  1:4308650/1‑35 (MQ=255)
                                 gCTATCGTGGTAATGAACTGCACGAACGTTATGCg   >  1:5778668/1‑35 (MQ=255)
                                 gCTATCGTGGTAATGAACTGCACGAACGTTATGCg   >  1:10011077/1‑35 (MQ=255)
                                  cTATCGTGGTAATGAACTGCACGAACGTTATGCGa  <  1:2316592/35‑1 (MQ=255)
                                  cTATCGTGGTAATGAACTGCACGAACGTTATGCGa  <  1:4813191/35‑1 (MQ=255)
                                  cTATCGTGGTAATGAACTGCACGAACGTTATGCGa  >  1:11042610/1‑35 (MQ=255)
                                  |                                  
TGCAGTTTTGTAGCCGAATTATTTTAGTCACCGGCTATCGTGGTAATGAACTGCACGAACGTTATGCGA  >  REL606/2901033‑2901101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.