New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1249678 =70 (0.680)6 (0.090) 4/30 NT 11.3% coding (230/633 nt) dhaL dihydroxyacetone kinase, C‑terminal domain
?REL606 1306336 = 50 (0.780)intergenic (‑97/+274) cls/kch cardiolipin synthetase/voltage‑gated potassium channel

Only 100 of 116 total aligned reads displayed.

AAAGAAGGTACCGAACAGCGGACCACTGGCACCACCGACGCTGGAAAGCAGCGTCATACCGGTATTCTT  >  REL606/1249644‑1249712
                                  |                                  
aaaGAAGGTACCGAACAGCGGACCACTGGcaccac                                    >  1:934609/1‑35 (MQ=255)
aaaGAAGGTACCGAACAGCGGACCACTGGcaccac                                    >  1:10457932/1‑35 (MQ=255)
aaaGAAGGTACCGAACAGCGGACCACTGGcaccac                                    >  1:12904827/1‑35 (MQ=255)
aaaGAAGGTACCGAACAGCGGACCACTGGcaccac                                    <  1:12287756/35‑1 (MQ=255)
 aagaagGTACCGAACAGCGGACCACTGGCaccacc                                   <  1:7134033/35‑1 (MQ=255)
 aagaagGTACCGAACAGCGGACCACTGGCaccacc                                   <  1:8011000/35‑1 (MQ=255)
   gaagGTACCGAACAGCGGACCACTGGCACCACCGa                                 >  1:3796235/1‑35 (MQ=255)
    aagGTACCGAACAGCGGACCACTGGCACCACCGAc                                >  1:4267844/1‑35 (MQ=255)
    aagGTACCGAACAGCGGACCACTGGCACCACCGAc                                >  1:4786473/1‑35 (MQ=255)
     agGTACCGAACAGCGGACCACTGGCACCACCGACg                               >  1:6144205/1‑35 (MQ=255)
      ggTACCGAACAGCGGACCACTGGCACCACCGACGc                              >  1:3156824/1‑35 (MQ=255)
      ggTACCGAACAGCGGACCACTGGCACCACCGACGc                              >  1:1920954/1‑35 (MQ=255)
      ggTACCGAACAGCGGACCACTGGCACCACCGACGc                              >  1:13304821/1‑35 (MQ=255)
       gTACCGAACAGCGGACCACTGGCACCACCGACGCt                             >  1:8303636/1‑35 (MQ=255)
       gTACCGAACAGCGGACCACTGGCACCACCGACGCt                             >  1:8146732/1‑35 (MQ=255)
        tACCGAACAGCGGACCACTGGCACCACCGACGCTg                            >  1:2928841/1‑35 (MQ=255)
        tACCGAACAGCGGACCACTGGCACCACCGACGCTg                            >  1:461316/1‑35 (MQ=255)
        tACCGAACAGCGGACCACTGGCACCACCGACGCTg                            >  1:10557024/1‑35 (MQ=255)
        tACCGAACAGCGGACCACTGGCACCACCGACGCTg                            >  1:13616440/1‑35 (MQ=255)
         aCCGAACAGCGGACCACTGGCACCACCGACGCTgg                           >  1:3045168/1‑35 (MQ=255)
         aCCGAACAGCGGACCACTGGCACCACCGACGCTgg                           >  1:19166274/1‑35 (MQ=255)
         aCCGAACAGCGGACCACTGGCACCACCGACGCTgg                           >  1:18941121/1‑35 (MQ=255)
         aCCGAACAGCGGACCACTGGCACCACCGACGCTgg                           >  1:7134728/1‑35 (MQ=255)
         aCCGAACAGCGGACCACTGGCACCACCGACGCTgg                           >  1:14241640/1‑35 (MQ=255)
         aCCGAACAGCGGACCACTGGCACCACCGACGCTgg                           >  1:12003125/1‑35 (MQ=255)
         aCCGAACAGCGGACCACTGGCACCACCGACGCTgg                           >  1:11460239/1‑35 (MQ=255)
          ccGAACAGCGGACCACTGGCACCACCGACGCTGGa                          >  1:14266547/1‑35 (MQ=255)
          ccGAACAGCGGACCACTGGCACCACCGACGCTGGa                          >  1:10274401/1‑35 (MQ=255)
          ccGAACAGCGGACCACTGGCACCACCGACGCTGGa                          >  1:17406435/1‑35 (MQ=255)
          ccGAACAGCGGACCACTGGCACCACCGACGCTGGa                          >  1:16153914/1‑35 (MQ=255)
           cGAACAGCGGACCACTGGCACCACCGACGCTGGaa                         >  1:4347818/1‑35 (MQ=255)
           cGAACAGCGGACCACTGGCACCACCGACGCTGGaa                         >  1:18105764/1‑35 (MQ=255)
            gAACAGCGGACCACTGGCACCACCGACGCTGGaaa                        >  1:1087377/1‑35 (MQ=255)
            gAACAGCGGACCACTGGCACCACCGACGCTGGaaa                        >  1:4778138/1‑35 (MQ=255)
            gAACAGCGGACCACTGGCACCACCGACGCTGGaaa                        >  1:18846363/1‑35 (MQ=255)
            gAACAGCGGACCACTGGCACCACCGACGCTGGaaa                        >  1:19756088/1‑35 (MQ=255)
             aaCAGCGGACCACTGGCACCACCGACGCTGGAAag                       >  1:19521626/1‑35 (MQ=255)
             aaCAGCGGACCACTGGCACCACCGACGCTGGAAag                       >  1:17295951/1‑35 (MQ=255)
             aaCAGCGGACCACTGGCACCACCGACGCTGGAAag                       >  1:688224/1‑35 (MQ=255)
               cAGCGGACCACTGTCACCACCGACGCTGGAAagca                     >  1:8316030/1‑35 (MQ=255)
               cAGCGGACCACTGGCACCACCGACGCTGGAAagca                     >  1:4271209/1‑35 (MQ=255)
                aGCGGACCACTGGCACCACCGACTCTGGAAagcag                    >  1:3716383/1‑35 (MQ=255)
                aGCGGACCACTGGCACCACCGACGCTGGAAagcag                    >  1:10486631/1‑35 (MQ=255)
                aGCGGACCACTGGCACCACCGACGCTGGAAagcag                    >  1:10944030/1‑35 (MQ=255)
                aGCGGACCACTGGCACCACCGACGCTGGAAagcag                    >  1:13968551/1‑35 (MQ=255)
                aGCGGACCACTGGCACCACCGACGCTGGAAagcag                    >  1:3284163/1‑35 (MQ=255)
                  cGGACCACTGGCACCACCGACGCTGGAAAGCAGCg                  >  1:15496852/1‑35 (MQ=255)
                  cGGACCACTGGCACCACCGACGCTGGAAAGCAGCg                  >  1:2385122/1‑35 (MQ=255)
                   ggACCACTGGCACCACCGACGCTGGAAAGCAGCGt                 >  1:3945331/1‑35 (MQ=255)
                   ggACCACTGGCACCACCGACGCTGGAAAGCAGCGt                 >  1:8846987/1‑35 (MQ=255)
                   ggACCACTGGCACCACCGACGCTGGAAAGCAGCGt                 >  1:18701311/1‑35 (MQ=255)
                   ggACCACTGGCACCACCGACGCTGGAAAGCAGCGt                 >  1:16501779/1‑35 (MQ=255)
                   ggACCACTGGCACCACCGACGCTGGAAAGCAGCGt                 >  1:6865880/1‑35 (MQ=255)
                    gACCACTGGCACCACCGACGCTGGAAAGCAGCGTc                >  1:8746408/1‑35 (MQ=255)
                    gACCACTGGCACCACCGACGCTGGAAAGCAGCGTc                >  1:7245682/1‑35 (MQ=255)
                     aCCACTGGCACCACCGACGCTGTAAAGCAGCGTCa               >  1:8964334/1‑35 (MQ=255)
                     aCCACTGGCACCACCGACGCTGGAAAGCAGCGTCa               >  1:798075/1‑35 (MQ=255)
                     aCCACTGCCCCCCCCGAAGCTGGAAAGCAGCGTCa               <  1:16145603/35‑1 (MQ=12)
                      ccACTGGCACCACCTACGCTGGAAAGCAGCGTCAt              >  1:19385125/1‑35 (MQ=255)
                      ccACTGGCACCACCGACGCTGGAAAGCAGCGTCAt              >  1:13261263/1‑35 (MQ=255)
                       cACTGGCACCACCGACGCTGGAAAGCAGCGTCATa             >  1:4671605/1‑35 (MQ=255)
                       cACTGGCACCACCGACGCTGGAAAGCAGCGTCATa             >  1:3019496/1‑35 (MQ=255)
                        aCTGGCACCACCGACGCTGGAAAGCAGCGTCATAc            >  1:10053405/1‑35 (MQ=255)
                         cccccccccCCGACGCTGGAAAGCAGCGTCATAcc           >  1:4667686‑M1/10‑35 (MQ=255)
                         cTGGCACCACCGACGCTGGAAAGCAGCGTCATAcc           >  1:14651188/1‑35 (MQ=255)
                         cTGGCACCACCGACGCTGGAAAGCAGCGTCATAcc           >  1:17809242/1‑35 (MQ=255)
                          tGGCACCACCGACGCTGGAAAGCAGCGTCATACCg          >  1:10328323/1‑35 (MQ=255)
                          tGGCACCACCGACGCTGGAAAGCAGCGTCATACCg          >  1:12684730/1‑35 (MQ=255)
                          tGGCACCACCGACGCTGGAAAGCAGCGTCATACCg          >  1:7956594/1‑35 (MQ=255)
                          tGGCACCACCGACGCTGGAAAGCAGCGTCATACCg          >  1:6192829/1‑35 (MQ=255)
                          tGGCACCACCGACGCTGGAAAGCAGCGTCATACCg          >  1:1956140/1‑35 (MQ=255)
                          tGGCACCACCGACGCCGGAAAGCAGCGTCATACCg          >  1:4827681/1‑35 (MQ=255)
                          ccccccccCCGACGCTGGAAAGCAGCGTCATACCg          >  1:1024315‑M1/9‑35 (MQ=255)
                          ccccccccCCGACGCTGGAAAGCAGCGTCATACCg          >  1:3996491‑M1/9‑35 (MQ=255)
                           ggCACCACCGACGCTGGAAAGCAGCGTCATACCgg         >  1:11572841/1‑35 (MQ=255)
                           cccccccCCGACGCTGGAAAGCAGCGTCATACCgg         >  1:5593768‑M1/8‑35 (MQ=255)
                            ccccccCCGACGCTGGAAAGCAGCGTCATACCGGt        >  1:8850295‑M1/7‑35 (MQ=255)
                             cccccCCGACGCTGGAAAGCAGCGTCATACCGGTa       >  1:3110524‑M1/6‑35 (MQ=255)
                             cccccCCGACGCTGGAAAGCAGCGTCATACCGGTa       >  1:14609417‑M1/6‑35 (MQ=255)
                             caccacCGACGCTGGAAAGCAGCGTCATACCGGTa       >  1:4041858/1‑35 (MQ=255)
                              ccccCCGACGCTGGAAAGCAGCGTCATACCGGTAt      >  1:1856063‑M1/5‑35 (MQ=255)
                              ccccCCGACGCTGGAAAGCAGCGTCATACCGGTAt      >  1:6975829‑M1/5‑35 (MQ=255)
                              accaccGACGCTGGAAAGCAGCGTCATACCGGTAt      >  1:16318199/1‑35 (MQ=255)
                              accaccGACGCTGGAAAGCAGCGTCATACCGGTAt      >  1:19620982/1‑35 (MQ=255)
                              accaccGACGCTGGAAAGCAGCGTCATACCGGTAt      >  1:13006160/1‑35 (MQ=255)
                               cccCCGACGCTGGAAAGAAGCGTCATACCGGTAtt     >  1:19743269‑M1/4‑35 (MQ=255)
                               ccaccGACGCTGGAAAGCAGCGTCATACCGGTAtt     >  1:15312486/1‑35 (MQ=255)
                               ccaccGACGCTGGAAAGCAGCGTCATACCGGTAtt     >  1:12368422/1‑35 (MQ=255)
                                ccCCGACGCTGGAAAGCAGCGTCATACCGGTATTc    >  1:18663670‑M1/3‑35 (MQ=255)
                                ccCCGACGCTGGAAAGCAGCGTCATACCGGTATTc    >  1:18318876‑M1/3‑35 (MQ=255)
                                ccCCGACGCTGGAAAGCAGCGTCATACCGGTATTc    >  1:14439876‑M1/3‑35 (MQ=255)
                                caccGACGCTGTAAAGCAGCGTCATACCGGTATTc    >  1:11572710/1‑35 (MQ=255)
                                caccGACGCTGTAAAGCAGCGTCATACCGGTATTc    >  1:5426551/1‑35 (MQ=255)
                                caccGACGCTGGAAAGCAGCGTCATACCGGTATTc    >  1:11582591/1‑35 (MQ=255)
                                 cCCGACGCTGGAAAGCAGCGTCATACCGGTATTCt   >  1:8835007‑M1/2‑35 (MQ=255)
                                 cCCGACGCTGGAAAGCAGCGTCATACCGGTATTCt   >  1:2335478‑M1/2‑35 (MQ=255)
                                 accGACGCTGGAAAGCAGCGTCATACCGGTATTCt   >  1:20513602/1‑35 (MQ=255)
                                  CCGACGCTGGAAAGCAGCGTCATACCGGTATTCtt  <  1:180446‑M1/35‑1 (MQ=255)
                                  CCGACGCTGGAAAGCAGCGTCATACCGGTATTCtt  >  1:16642122‑M1/1‑35 (MQ=255)
                                  CCGACGCTGGAAAGCAGCGTAATACCGGTATTCtt  >  1:3743742‑M1/1‑35 (MQ=255)
                                  |                                  
AAAGAAGGTACCGAACAGCGGACCACTGGCACCACCGACGCTGGAAAGCAGCGTCATACCGGTATTCTT  >  REL606/1249644‑1249712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.