New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1691508 =100 (0.970)7 (0.100) 3/34 NT 8.7% intergenic (+43/‑63) ydgR/gst putative tripeptide transporter permease/glutathionine S‑transferase
?REL606 = 1806767 76 (1.040)coding (233/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

Only 100 of 184 total aligned reads displayed.

GAAACTCTTTTACAAGCCGCTAACTTTTCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCACTACCATAC  >  REL606/1691474‑1691542
                                  |                                  
tttcccgtttctctggcaataatcgcggttaattc                                    >  1:20014041‑M1/35‑35 (MQ=255)
ttacccgtttctctggcaataatcgcggttaattc                                    <  1:15320219‑M1/1‑1 (MQ=255)
ttacccgtttctctggcaataatcgcggttaattc                                    <  1:2464727‑M1/1‑1 (MQ=255)
ttacccgtttctctggcaataatcgcggttaattc                                    >  1:3615639‑M1/35‑35 (MQ=255)
ttacccgtttctctggcaataatcgcggttaattc                                    >  1:15967554‑M1/35‑35 (MQ=255)
ttacccgtttctctggcaataatcgcggttaattc                                    >  1:617327‑M1/35‑35 (MQ=255)
ttacccgtttctctggcaataatcgcggttaattc                                    >  1:12812304‑M1/35‑35 (MQ=255)
ttacccgtttctctggcaataatcgcggttaattc                                    >  1:4508582‑M1/35‑35 (MQ=255)
gAAACTCTTTTACAAGCCGCTAACTTTTCGTTAGc                                    >  1:4363960/1‑35 (MQ=255)
gAAACTCTTTTACAAACCGCTAACTTTTCGTTAGc                                    <  1:8577613/35‑1 (MQ=255)
gAAACTCTTTAAAAAGCCGCTAACTTTTCGTTAGc                                    <  1:11242673/35‑1 (MQ=37)
 tacccgtttctctggcaataatcgcggttaattCg                                   >  1:15231149‑M1/34‑35 (MQ=255)
 aaaCTTTTTAAAAAGCCGCTAACTTTTCGTTAGCg                                   <  1:16750737/35‑1 (MQ=25)
 aaaCTCTTTTACAAGCCGCTAACTTTTCGTTAGCg                                   >  1:9586283/1‑35 (MQ=255)
 aaaCTCTTTAAAAAGCCGCTAACTTTTCGTTAGCg                                   <  1:13993190/35‑1 (MQ=37)
  aaCTCTTTTACAAGCCGCTAACTTTTCGTTAGCgg                                  >  1:5820812/1‑35 (MQ=255)
  aaCTCTTTTACAAGCCGCTAACTTTTCGTTAGCga                                  >  1:15872922/1‑34 (MQ=255)
  aaCTCTTTTACAAGCCGCTAACTTTTCGTTAGCga                                  >  1:2996157/1‑34 (MQ=255)
   cccgtttctctggcaataatcgcggttaattCGGc                                 >  1:3806001‑M1/32‑35 (MQ=255)
   cccgtttctctggcaataatcgcggttaattCGGc                                 <  1:937810‑M1/4‑1 (MQ=255)
   aCTCTTTTACAAGCCGCTAACTTTTCGCTAGCGGc                                 >  1:18143526/1‑35 (MQ=255)
   aCTCTTTAAAAAGCCGCTAACTTTTCGTTAGCGGc                                 <  1:13731814/35‑1 (MQ=37)
    ctctTTTACAAGCCGCTAACTTTTCGTTAGCGGCt                                >  1:11510685/1‑35 (MQ=255)
    ccgtttctctggcaataatcgcggttaattCGGCt                                >  1:15141085‑M1/31‑35 (MQ=255)
    ccgtttctctggcaataatcgcggttaattCGGCt                                >  1:16204962‑M1/31‑35 (MQ=255)
     tctTTAAAAAGCCGCTAACTTTTCGTTAGCGACtt                               <  1:14493550/35‑1 (MQ=25)
     cgtttctctggcaataatcgcggttaattTGGCtt                               <  1:13597224‑M1/6‑1 (MQ=255)
     cgtttctctggcaataatcgcggttaattCGGCtt                               >  1:13019330‑M1/30‑35 (MQ=255)
     cgtttctctggcaataatcgcggttaattCGGCtt                               <  1:10048728‑M1/6‑1 (MQ=255)
      gtttctctggcaataatcgcgggtaattCGGCttt                              <  1:15061296‑M1/7‑1 (MQ=255)
       ttttACAAGCCGCTAACTTTTCGTTAGCGGCtttt                             >  1:2243485/1‑35 (MQ=255)
       ttttACAAGCCGCTAACTTTTCGTTAGCGGCtttt                             >  1:5083523/1‑35 (MQ=255)
       ttttACAAGCCGCTAACTTTTCGTTAGCGACtttt                             >  1:8394358/1‑35 (MQ=255)
        ttctctggcaataatcgctgttaattCGGCttttt                            <  1:4040357‑M1/9‑1 (MQ=255)
        ttctctggcaataatcgcggttaattCGGCttttt                            <  1:20147565‑M1/9‑1 (MQ=255)
         ttACAAGCCGCTAACTTTTCGTTAGCGGCtttttt                           >  1:16295465/1‑35 (MQ=255)
         ttACAAGCCGCTAACTTTTCGTTAGCGACtttttt                           >  1:19127038/1‑35 (MQ=255)
         tctctggcaataatcgcggttaattCGGCtttttt                           <  1:5205646‑M1/10‑1 (MQ=255)
          ctctggcaataatcgcggttaattCGGCttttttt                          <  1:2182189‑M1/11‑1 (MQ=255)
          aaaaaGCCGCTAACTTTTCGTTAGCGACttttttt                          <  1:328886/32‑1 (MQ=37)
          aaaaaGCCGCTAACTTTTCGTTAGCGACttttttt                          <  1:5981617/32‑1 (MQ=37)
           tctggcaataatcgcggttaattCGGCtttttttt                         <  1:14616768‑M1/12‑1 (MQ=255)
           aaaaGCCGCTAACTTTTCGTTAGCGGCtttttttt                         <  1:1959193/33‑1 (MQ=255)
           aCAAGCAGCTAACTTTTCGTTAGCGACtttttttt                         <  1:5983265/35‑1 (MQ=37)
            cAAGCCGCTAACTTTTCGTTAGCGGCttttttttt                        >  1:16945529/1‑35 (MQ=255)
            cAAGCCGCTAACTTTTCGTTAGCGACttttttttt                        >  1:13503693/1‑35 (MQ=255)
            aaaGCCGCTAACTTTTCGTTAGCGACttttttttt                        <  1:6344080/34‑1 (MQ=255)
             aaGCCGCTAACTTTTCGTTAGCGGCtttttttttt                       >  1:3236574/1‑34 (MQ=255)
             aaGCCGCTAACTTTTCGTTAGCGGCTTTTTTTTTg                       <  1:6738152/35‑1 (MQ=255)
             aaGCCGCTAACTTTTAGTTAGCGGCTTTTTTTTTg                       <  1:10061142/35‑1 (MQ=255)
              ggcaataatcgcggttaattCGgcttttttttttt                      <  1:8636261‑M1/15‑3 (MQ=255)
              aGCCGCTAACTTTTCGTTAGCGACTTTTTTTTTGt                      >  1:15548779/1‑35 (MQ=255)
               gCCGCTAACTTTTCGTTAGCGGCTTTTTTTTTTtt                     >  1:16340801/1‑35 (MQ=255)
               gCCGCTAACTTTTCGTTAGCGGCTTTTTTTTTGtt                     <  1:17617428/35‑1 (MQ=255)
               gCCGCTAACTTTTCGTTAGCGACTTTTTTTTTGtt                     >  1:11104609/1‑35 (MQ=255)
                ccGCTAACTTTTCGTTAGCGACTTTTTTTTTGTTc                    <  1:17019450/35‑1 (MQ=255)
                ccGCTAACTTTTCGTTAGCGACTTTTTTTTTGTTc                    >  1:2796091/1‑35 (MQ=255)
                caataatcgcggttaattCGGCTTTTTTTTTTTTc                    <  1:400980‑M1/17‑1 (MQ=255)
                caataatcgcggttaattCGGCTTTTTTTTTTTTc                    <  1:16108775‑M1/17‑1 (MQ=255)
                 cGCTAACTTTTCGTTAGCGGCTTTTTTTTTTtttt                   >  1:20178019/1‑33 (MQ=38)
                 cGCTAACTTTTCGTTAGCGGCTTTTTTTTTGTTCa                   <  1:15605052/35‑1 (MQ=255)
                 cGCTAACTTTTCGTTAGCGACTTTTTTTTTGTTCa                   <  1:19714470/35‑1 (MQ=255)
                 cGCTAACTTTTCGTTAGCGACTTTTTTTTTGTTCa                   >  1:8057876/1‑35 (MQ=255)
                 aataatcgcggttaattCGGCTTTTTTTTTTTTCa                   <  1:8309273‑M1/18‑1 (MQ=255)
                 aataatcgcggttaattCGGCTTTTTTTTTTTTCa                   <  1:17298197‑M1/18‑1 (MQ=255)
                  gCTAACTTTTCGTTAGCGGCTTTTTTTTTTttttg                  >  1:4302319/1‑32 (MQ=37)
                  gCTAACTTTTCGTTAGCGACTTTTTTTTTGTTCAg                  <  1:9639550/35‑1 (MQ=255)
                  ataatcgcggttaattCGGCTTTTTTTTTTTTCAg                  <  1:19487564‑M1/19‑1 (MQ=255)
                   cTAACTTTTCGTTAGCGGCTTTTTTTTTTTTCAGc                 >  1:1739134/1‑35 (MQ=255)
                    tAACTTTTCGTTAGCGGCTTTTTTTTTTTTTAGCa                >  1:13185316/1‑35 (MQ=37)
                    tAACTTTTCGTTAGCGGCTTTTTTTTTGTTCAGCa                <  1:1029311/35‑1 (MQ=255)
                    tAACTTTTCGTTAGCGACTTTTTTTTTGTTCAGCa                <  1:18885967/35‑1 (MQ=255)
                     aaCTTTTCGTTAGCTGCTTTTTTTTTGTTCAGCaa               >  1:7011866/1‑35 (MQ=255)
                     aaCTTTTCGTTAGCGGCTTTTTTTTTTTTTTGCaa               >  1:11847617/1‑35 (MQ=25)
                     aaCTTTTCGTTAGCGGCTTTTTTTTTGTTCAGCaa               <  1:14547191/35‑1 (MQ=255)
                     aaCTTTTCGTTAGCGACTTTTTTTTTGTTCATCaa               >  1:5562415/1‑35 (MQ=38)
                      aCTTTTCGTTAGCGGCTTTTTTTTTGTTCAGCAAc              <  1:9226824/35‑1 (MQ=255)
                      aCTTTTCGTTAGCGGCTTTTTTTTTTTTAGCaaac             >  1:19142394/1‑33 (MQ=21)
                      aCTTTTCGTTAGCGACTTTTTTTTTGTTCAGCAAc              <  1:13383075/35‑1 (MQ=255)
                       cTTTTCGTTAGCGACTTTTTTTTTGTTCAGCAACg             <  1:20550928/35‑1 (MQ=255)
                        ttttCGTTAGCGGCTTTTTTTTTGTTCAGCAACGc            <  1:18093844/35‑1 (MQ=255)
                        ttttCGTTAGCGGCTTTTTTTTTGTTCAGCAACGc            <  1:3079814/35‑1 (MQ=255)
                        ttttCGTTAGCGGCTTTTTTTTTGTTCAGCAACGc            <  1:13582599/35‑1 (MQ=255)
                         tttCGTTAGCGGCTTTTTTTTTTTTTTGCAACGCa           >  1:12938480/1‑35 (MQ=25)
                         tttCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCa           <  1:10489716/35‑1 (MQ=255)
                         tttCGTTAGCGACTTTTTTTTTGTTCAGCAACGCa           <  1:11592226/35‑1 (MQ=255)
                          ttCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCAc          <  1:2598179/35‑1 (MQ=255)
                          ttCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCAc          <  1:12905833/35‑1 (MQ=255)
                          ttCGTTAGCGACTTTTTTTTTGTTCAGCAACGCAc          >  1:10623264/1‑35 (MQ=255)
                           tCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCACt         <  1:9061450/35‑1 (MQ=255)
                           tCGTTAGCGACTTTTTTTTTGTTCAGCAACGCACt         <  1:16854952/35‑1 (MQ=255)
                           tCGTTAGCGACTTTTTTTTTGTTCAGCAACGCACt         >  1:14326701/1‑35 (MQ=255)
                           tCGTTAGCGACTTTTTTTTTGTTCAGCAACGAACt         >  1:11370712/1‑35 (MQ=37)
                            cGTTAGCGGCTTTTTTTTTGTTCAGCAACGCACTa        <  1:14748810/35‑1 (MQ=255)
                            cGTTAGCGACTTTTTTTTTGTTCAGCAACGCACTa        <  1:7145175/35‑1 (MQ=255)
                             gTTAGCGGCTTTTTTTTGTTCAGCAACGCACTAcc      <  1:759106/35‑1 (MQ=37)
                             gTTAGCGACTTTTTTTTTGTTCAGCAACGCACTAc       <  1:5436348/35‑1 (MQ=255)
                              ttAGCGGCTTTTTTTTTGTTCAGCAACGCACTAcc      <  1:4997481/35‑1 (MQ=255)
                                aGCGACTTTTTTTTTGTTCAGCAACGCACTACGAt    <  1:7936319/35‑1 (MQ=25)
                                  CGACTTTTTTTTTGTTCAGCAACGCACTACCATAc  >  1:18682827‑M1/1‑35 (MQ=255)
                                  |                                  
GAAACTCTTTTACAAGCCGCTAACTTTTCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCACTACCATAC  >  REL606/1691474‑1691542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.