New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 471760 =64 (0.620)13 (0.140) 5/42 NT 15.0% coding (281/960 nt) aes acetyl esterase
?REL606 3912266 = 91 (1.010)intergenic (+46/‑94) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

ATAGCCCGGCGACGCTATTTTATTTGCATGGAGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/471796‑471760
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGTTTTTTTTGA  >  REL606/3912266‑3912278
                                                  
ATAGCCCGGCGACGCTATTTTATTTGCATGGAGGC                 >  1:6825190/1‑35
ATAGCCCGGCGACGCTATTTTATTTGCATGGAGGC                 <  1:7230435/35‑1
ATAGCCCGGCGACGCTATTTTATTTGCATGGAGGC                 >  1:12163766/1‑35
ATAGCCCGGCGACGCTATTTTATTTGCATGGAGGC                 >  1:17485269/1‑35
ATAGCCCGGCGACGCTATTTTATTTGCATGGAGGC                 >  1:15158573/1‑35
 TAGCCCGGCGACGCTATTTTATTTGCATGGAGGCG                >  1:6362888/1‑35
 TAGCCCGGCGACGCTATTTTATTTGCATGGAGGCG                >  1:18796789/1‑35
  AGCCCGGCGACGCTATTTTATTTGCATGGAGGCGG               <  1:5867762/35‑1
  AGCCCGGCGACGCTATTTTATTTGCATGGAGGCGG               <  1:17540802/35‑1
  AGCCCGGCGACGCTATTTTATTTGCATGGAGGCGG               <  1:13099057/35‑1
   GCCCGGCGACGCTATTTTATTTGCATGGAGGCGGG              >  1:2885918/1‑35
   GCCCGGCGACGCTATTTTATTTGCATGGAGGCGGG              >  1:12429985/1‑35
    CCCGGCGACGCTATTTTATTTGCATGGAGGCGGGG             >  1:931771/1‑35
    CCCGGCGACGCTATTTTATTTGCATGGAGGCGGGG             >  1:3822099/1‑35
    CCCGGCGACGCTATTTTATTTGCATGGAGGCGGGG             >  1:1820570/1‑35
     CCGGCGACGCTATTTTATTTGCATGGAGGCTGGGG            >  1:12898233/1‑35
     CCGGCGACGCTATTTTATTTGCATGGAGGCGGGGG            >  1:8906060/1‑35
     CCGGCGACGCTATTTTATTTGCATGGAGGCGGGGG            >  1:5356382/1‑35
     CCGGCGACGCTATTTTATTTGCATGGAGGCGGGGG            >  1:11420354/1‑35
     CCGGCGACGCTATTTTATTTGCATGGAGGCGGGGG            >  1:8880892/1‑35
     CCGGCGACGCTATTTTATTTGCATGGAGGCGGGGG            >  1:3339176/1‑35
      CGGCGACGCTATTTTATTTGCATTGAGGCGGGGGg           >  1:17411356/1‑34
      CGGCGACGCTATTTTATTTGCATTGAGGCGGGGGg           >  1:18243084/1‑34
      CGGCGACGCTATTTTATTTGCATTGAGGCGGGGGg           >  1:20558347/1‑34
      CGGCGACGCTATTTTATTTGCATGGAGGCGGGGGg           >  1:15767842/1‑34
       GGCGACGCTATTTTATTTGCATGGAGGCGGGGGgt          >  1:1296295/1‑33
       GGCGACGCTATTTTATTTGCATGGAGGCGGGGGgg          >  1:2849161/1‑33
       GGCGACGCTATTTTATTTGCATGGAGGCGGGGGgg          >  1:7149964/1‑33
       GGCGACGCTATTTTATTTGCATGGAGGCGGGGGgg          >  1:7517572/1‑33
       GGCGACGCTATTTTATTTGCATGGAGGCGGGGGgg          >  1:8497307/1‑33
       GGCGACGCTATTTTATTTGCATGGAGGCGGGGGTg          >  1:7150790/1‑34
        GCGACGCTATTTTATTTGCATGGAGGCGGGGGggt         >  1:1701827/1‑32
        GCGACGCTATTTTATTTGCATGGAGGCGGGGGggg         >  1:12050657/1‑32
        GCGACGCTATTTTATTTGCATGGAGGCGGGGGTgt         >  1:7510359/1‑33
         CGACGCTATTTTATTTGCATGGAGGCGGGGGTgtg        >  1:17353970/1‑32
         CGACGCTATTTTATTTGCATGGAGGCGGGGGTggt        >  1:17626877/1‑32
         CGACGCTATTTTATTTGCATGGAGGCGGGGGTTTT        >  1:869692/1‑35
         CGACGCTATTTTATTTGCATGGAGGCGGGGGTGTT        >  1:4725881/1‑35
         CGACGCTATTTTATTTGCATGGAGGCGGGGGTGTT        >  1:2192398/1‑35
         CGACGCTATTTTATTTGCATGGAGGCGGGGGTGTT        >  1:10630245/1‑35
          GACGCTATTTTATTTGCATGGAGGCGGGGGTGTTT       >  1:10761604/1‑35
            CGCTATTTTATTTGCATGGAGGCGGGGGTGTTTTT     >  1:13712156/1‑35
             GCTATTTTATTTGCATGGAGGCGGGGGTTTTTTTT    >  1:5547638/1‑35
             GCTATTTTATTTGCATGGAGGCGGGGGTGTTTTT   >  1:19236493/1‑34
             GCTATTTTATTTGCATGGAGGCGGGGGTGTTTTTT    >  1:4783166/1‑35
             GCTATTTTATTTGCATGGAGGCGGGGGGTTTTTT   >  1:12690822/1‑34
              CTATTTTATTTGCATGGAGGCGGGGGTTTTTTTTG   >  1:2375831/1‑35
              CTATTTTATTTGCATGGAGGCGGGGGGTTTTTTTt   >  1:17139773/1‑34
               TATTTTATTTGCATGGAGGCGGGGGTTTGTTTTGg  >  1:16976257/1‑34
                                                  
ATAGCCCGGCGACGCTATTTTATTTGCATGGAGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/471796‑471760
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGTTTTTTTTGA  >  REL606/3912266‑3912278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.