New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2234598 =88 (0.860)15 (0.180) 5/38 NT 16.6% coding (538/1008 nt) yejK nucleoid‑associated protein NdpA
?REL606 3944634 = 81 (1.000)intergenic (+23/‑124) proM/aslB tRNA‑Pro/predicted regulator of arylsulfatase activity

Only 100 of 263 total aligned reads displayed.

TCTCGCCGACCAATTTTGAACCCCGCTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTCCC  >  REL606/3944600‑3944668
                                  |                                  
tctcGCCGACCAATTTTGAACCCCGCTTCGGCggg                                    <  1:11167980/35‑1 (MQ=255)
tctcGCCGACCAATTTTGAACCCCGCTTCGGCggg                                    <  1:6640722/35‑1 (MQ=255)
tctcGCCGACCAATTTTGAACCCCGCTTCGGCggg                                    <  1:13114209/35‑1 (MQ=255)
tctcGCCGACCAATTTTGAACCCCGCTTCGGCggg                                    <  1:15864223/35‑1 (MQ=255)
cttacagcagaggaacttgatgcgttaacggcggg                                    >  1:11014334‑M2/35‑35 (MQ=255)
catggacgaagctgaatggcgggatttacggcggg                                    >  1:17195392‑M2/35‑35 (MQ=255)
agcgcgcaggcatcagcatcaccgctgTCGGCggg                                    <  1:10252237‑M1/8‑1 (MQ=255)
 ctcGCCGACCAATTTTGAACCCCGCTTCGGCgggg                                   >  1:15559692/1‑35 (MQ=255)
 ctcGCCGACCAATTTTGAACCCCGCTTCGGCgggg                                   <  1:2472275/35‑1 (MQ=255)
 ctcGCCGACCAATTTTGAACCCCGCTTCGGCgggg                                   <  1:11937961/35‑1 (MQ=255)
 atggacgaagctgaatggcgggatttacggcgggg                                   >  1:9743561‑M2/34‑35 (MQ=255)
  tcGCCGACCAATTTTGAACCCCGCTTCGGCggggg                                  >  1:9368342/1‑34 (MQ=255)
  tcGCCGACCAATTTTGAACCCCGCTTCGGCGGGGt                                  <  1:15209505/35‑1 (MQ=255)
  tcGCCGACCAATTTTGAACCCAGCTTCGGCGGGGt                                  <  1:4846093/35‑1 (MQ=255)
  tacagcagaggaacttgatgcgttaacggcgggtg                                  >  1:14175929‑M2/33‑33 (MQ=255)
  tacagcagaggaacttgatgcgttaacggcggGGt                                  >  1:14243311‑M2/33‑35 (MQ=255)
  tacagcagaggaacttgatgcgttaacggcggGGt                                  >  1:8387989‑M2/33‑35 (MQ=255)
  cgcgcaggcatcagcatcaccgctgTCGGCGGGGt                                  <  1:613562‑M1/10‑1 (MQ=255)
   ggacgaagctgaatggcgggatttacggcgggggt                                 >  1:12932003‑M2/32‑33 (MQ=255)
   ctgaaagggcgagtagggcgcaaagtggcggGGtt                                 >  1:13995456‑M2/32‑35 (MQ=255)
   cGCCGACCAATTTTGAACCCCGCTTCGGCgggggt                                 >  1:13644178/1‑33 (MQ=255)
   acagcagaggaacttgatgcgttaacggcgggggt                                 >  1:18990954‑M2/32‑33 (MQ=255)
   acagcagaggaacttgatgcgttaacggcggGGtt                                 >  1:16325354‑M2/32‑35 (MQ=255)
   acagcagaggaacttgatgcgttaacggcggGGtt                                 >  1:18471802‑M2/32‑35 (MQ=255)
   acagcagaggaacttgatgcgttaacggcggGGtt                                 >  1:6670627‑M2/32‑35 (MQ=255)
    tgaaagggcgagtagggcgcaaagtggcggGTttt                                >  1:9010996‑M2/31‑35 (MQ=255)
    tgaaagggcgagtagggcgcaaagtggcggGTttt                                >  1:8163370‑M2/31‑35 (MQ=255)
    tgaaagggcgagtagggcgcaaagtggcggGGttt                                >  1:871945‑M2/31‑35 (MQ=255)
    gCCGACCAATTTTGAACCCCGCTTCGGCGGGGgtt                                >  1:14893356/1‑35 (MQ=255)
    cgcaggcatcagcatcaccgctgTCGGCGGGgttc                                <  1:7552102‑M1/12‑2 (MQ=255)
     gcaggcatcagcatcaccgctgTCGGCGGGTtttt                               <  1:17758606‑M1/13‑1 (MQ=255)
     gcaggcatcagcatcaccgctgTCGGCGGGGtttt                               <  1:12238301‑M1/13‑1 (MQ=255)
     gaaagggcgagtagggcgcaaagtggcggGGtttt                               >  1:10418954‑M2/30‑35 (MQ=255)
     acgaagctgaatggcgggatttacggcggGGtttt                               >  1:3338402‑M2/30‑35 (MQ=255)
     acgaagctgaatggcgggatttacggcggGGtttt                               >  1:19695177‑M2/30‑35 (MQ=255)
      gcagaggaacttgatgcgttaacggcggGGttttt                              >  1:5866774‑M2/29‑35 (MQ=255)
      cGACCAATTTTGAACCCCGCTTCGGCGGGGttttt                              <  1:8966949/35‑1 (MQ=255)
      aaagggcgagtagggcgcaaagtggcggGGttctt                              >  1:18578463‑M2/29‑35 (MQ=255)
      aaagggcgagtagggcgcaaagtggcggGGttctt                              >  1:11346253‑M2/29‑35 (MQ=255)
       gACAAATTTTGAACCCCGCTTCGGCGGGGtttttt                             <  1:10648876/35‑1 (MQ=255)
       aggcatcagcatcaccgctgTCGGCGGggttttgt                             <  1:13747123‑M1/15‑3 (MQ=255)
       aagggcgagtagggcgcaaagtggcggGTtttttt                             >  1:13411492‑M2/28‑35 (MQ=255)
        agggcgagtagggcgcaaagtggcggGgttctttt                            >  1:2322133‑M2/27‑34 (MQ=255)
        agggcgagtagggcgcaaagtggcggGgttctttt                            >  1:18114667‑M2/27‑34 (MQ=255)
        agaggaacttgatgcgttaacggcggGgttttttt                            >  1:3887386‑M2/27‑34 (MQ=255)
        aagctgaatggcgggatttacggcggGGTTTTTTg                            >  1:448553‑M2/27‑35 (MQ=255)
        aCCAATTTTGAACCCCGCTTCGGCGGGGGTTTTTg                            >  1:16142169/1‑35 (MQ=255)
         gggcgagtagggcgcaaagtggcggggttttttat                           >  1:13727478‑M2/26‑33 (MQ=255)
         gaggaacttgatgcgttaacggcggggtttttttt                           >  1:12517515‑M2/26‑33 (MQ=255)
         gaggaacttgatgcgttaacggcggggtttttttt                           >  1:14740925‑M2/26‑33 (MQ=255)
          gctgaatggcgggatttacggcggggttttttttg                          >  1:1796005‑M2/25‑32 (MQ=255)
          catcagcatcaccgctgTCGGCGgggtttttttgc                          <  1:11548488‑M1/18‑4 (MQ=255)
          cAATTTTGAACCCCGCTTCGGCGGGGTTTTTTGtt                          <  1:19191611/35‑1 (MQ=255)
           gcgagtagggcgcaaagtggcggGGTTTTTTTttt                         >  1:16498765‑M2/24‑35 (MQ=255)
           aaTTTTGAACCCCGCTTCGGCGGGGTTTTTTGttt                         >  1:10474811/1‑35 (MQ=255)
            aTTTTGAACCCCGCTTCGGCGGGGTTTTTTGtttt                        <  1:19547027/35‑1 (MQ=255)
            aTTTTGAACCCCGCTTCGGCGGGGGTTTTTGtttt                        >  1:18349241/1‑35 (MQ=255)
            aTTTTGAACCCCGCTTCGGCGGGGGTTTTTGtttt                        >  1:5702697/1‑35 (MQ=255)
             ttttGAACCCCGCTTCGGCGGGGGTTTTTGTTTTc                       >  1:9161744/1‑35 (MQ=255)
             ttttGAACCCCGCTTCGGCGGGGGTTTTTGTTTTc                       >  1:6346519/1‑35 (MQ=255)
              tttGAACCCCGCTTCGGCGGGGGTTTTTGTTTTCt                      >  1:3719336/1‑35 (MQ=255)
              tttGAACCCCGCTTCGGCGAGGTTTTTTGTTTTCt                      <  1:17644151/35‑1 (MQ=255)
               ttGAACCCCGCTTCGGCGGGGTTTTTTGTTTTCtg                     <  1:4085750/35‑1 (MQ=255)
               ttGAACCCCGCTTCGGCGGGGTTTTTTGTTTTCtg                     >  1:6458082/1‑35 (MQ=255)
               ttGAACCCCGCTTCGGCGGGGTTTTTTGTTTTCtg                     <  1:3083504/35‑1 (MQ=255)
               ttGAACCCCGCTTCGGCGGGGGTTTTTGTTTTCtg                     >  1:11667603/1‑35 (MQ=255)
                 gAACCCCGCTTCGGCGGGGTTTTTTTGTTTCtttg                   >  1:7211119/1‑35 (MQ=17)
                 gAACCCCGCTTCGGCGGGGTTTTTTGTTTTCtgtg                   <  1:1006140/35‑1 (MQ=255)
                 gAACCCCGCTTCGGCGGGGTTTTTTGTTTTCtgtg                   <  1:14578369/35‑1 (MQ=255)
                 gAACCCCGCTTCGGCGGGGTTTTTTGTTTTCtgtg                   <  1:7717531/35‑1 (MQ=255)
                   aCCCCGCTTCGGCGGGGTTTTTTGTTTTCTGTGCa                 <  1:892790/35‑1 (MQ=255)
                   aCCCCGCTTCGGCGGGGGTTTTTGTTTTCTGTGCa                 >  1:12853257/1‑35 (MQ=255)
                   aCCCCGCTTCGGCGGGGGTTTTTGTTTTCTGTGCa                 >  1:11233915/1‑35 (MQ=255)
                     cccGCTTCGGCGGGGTTTTTTGTTTTCTGTGCAtt               <  1:16892397/35‑1 (MQ=255)
                     cccGCTTCGGCGGGGGTTTTTGTTTTCTGTGCAtt               >  1:202573/1‑35 (MQ=255)
                     cccGCTTCGGCGGGGGTTTTTGTTTTCTGTGCAtt               >  1:8622842/1‑35 (MQ=255)
                      ccGCTTCGGCGGGGTTTTTTGTTTTCTGTGCAttt              <  1:8553698/35‑1 (MQ=255)
                       cGCTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTc             <  1:1736998/35‑1 (MQ=255)
                         cTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGt           <  1:16461498/35‑1 (MQ=255)
                          ttCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTc          <  1:2848256/35‑1 (MQ=255)
                           TCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCa         >  1:9221483‑M1/1‑35 (MQ=255)
                           TCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCa         >  1:15503019‑M1/1‑35 (MQ=255)
                            cggctgGGTTTTTTGTTTTCTGTGCATTTCGTCAc        >  1:582581‑M2/7‑35 (MQ=255)
                            cggcggGGTTTTTTGTTTTCTGTGCATTTCGTCAc        <  1:19739324‑M2/29‑1 (MQ=255)
                            cggcggGGTTTTTTGTTTTCTGTGCATTTCGTCAc        <  1:1235366‑M2/29‑1 (MQ=255)
                             ggcggGGTTTTTTGTTTTCTGTGCATTTCGTCACt       <  1:14537879‑M2/30‑1 (MQ=255)
                             ggcggGGTTTTTTGTTTTCTGTGCATTTCGTCACt       >  1:16731127‑M2/6‑35 (MQ=255)
                             ggcggGGTTTTTTGTTTTCTGTGCATTTCGTCACt       >  1:5518706‑M2/6‑35 (MQ=255)
                             ggcggGGTTTTTTGTTTTCTGTGCATTTCGTCACt       >  1:20548076‑M2/6‑35 (MQ=255)
                              gcggGGTTTTTTGTTTTCTGTGCATTTCGTCACtt      >  1:18261777‑M2/5‑35 (MQ=255)
                              gcggGGTTTTTTGTTTTCTGTGCATTTCGTCACtt      <  1:12134190‑M2/31‑1 (MQ=255)
                              gcggGGTTTTTTGTTTTCTGTGCATTTCGTCACtt      >  1:20108245‑M2/5‑35 (MQ=255)
                               cggGGTTTTTTGTTTTCTGTGCATTTCGTCACttt     >  1:7968664‑M2/4‑35 (MQ=255)
                               cggGGTTTTTTGTTTTCTGTGCATTTCGTCACttt     >  1:22223‑M2/4‑35 (MQ=255)
                               cggGGTTTTTTGTTTTCTGTGCATTTCGTCACttt     >  1:14295387‑M2/4‑35 (MQ=255)
                                ggGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTc    >  1:9556799‑M2/3‑35 (MQ=255)
                                 gGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTcc   >  1:3556642‑M2/2‑35 (MQ=255)
                                 gGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTcc   >  1:9467498‑M2/2‑35 (MQ=255)
                                  ggTTTTTTGTTTTCTGTGCATTTCGTCACTTTccc  <  1:17507389/35‑1 (MQ=255)
                                  ggTTTTTTGTTTTCTGTGCATTTCGTCACTTTccc  <  1:2521444/35‑1 (MQ=255)
                                  |                                  
TCTCGCCGACCAATTTTGAACCCCGCTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTCCC  >  REL606/3944600‑3944668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.