New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2749601109 (1.060)21 (0.230) 6/42 NT 19.0% coding (404/2079 nt) fhlA DNA‑binding transcriptional activator
?REL606 4351442 = 84 (0.930)intergenic (+50/‑88) groEL/yjeI chaperonin GroEL/hypothetical protein

Only 100 of 203 total aligned reads displayed.

GCCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGC  >  REL606/2749566‑2749635
                                   |                                  
 ccACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG                                    <  1:571821‑M1/35‑1 (MQ=255)
  cACTGGCGGCGGAAGGGCATATTTTTGGTGGCtgt                                   <  1:10502625/35‑1 (MQ=255)
  cACTGGCGGCGGAAGGGCATATTTTTGGTGGCtgt                                   <  1:295298/35‑1 (MQ=255)
  cACTGGCGGCGGAAGGGCATATTTTTGGTGGCtgt                                   <  1:2372661/35‑1 (MQ=255)
  cACTGGCGGCGGAAGGGCATATTTTTGGTGGCtgt                                   <  1:16504723/35‑1 (MQ=255)
  cACTGGCGGCGGAAGGGCATATTTTTGGTGGCtgt                                   <  1:13925310/35‑1 (MQ=255)
   aCTGGCGGCGGAAGGGCATATTTTTGGTGGCtgtg                                  <  1:20084053/35‑1 (MQ=255)
   aCTGGCGGCGGAAGGGCATATTTTTGGTGGCtgtg                                  <  1:14457020/35‑1 (MQ=255)
    cTGGCGGCGGAAGGGCATATTTTTGGTGGCTGggg                                 >  1:14204639‑M1/1‑32 (MQ=255)
    cTGGCGGCGGAAGGGCATATTTTTGGTGGCTGTGa                                 <  1:19124423/35‑1 (MQ=255)
     tGGCGGCGGAAGGGCATATTTTTGGTGGCTGTGaa                                <  1:4416679/35‑1 (MQ=255)
     tGGCGGCGGAAGGGCATATTTTTGGTGGCTGTGaa                                <  1:14994176/35‑1 (MQ=255)
      ggcggcGGAAGGGCATATTTTTGGTGGCTGggggg                               >  1:16711175‑M1/1‑30 (MQ=255)
      ggcggcGGAAGGGCATATTTTTGGTGGCTGTGAAt                               <  1:14334893/35‑1 (MQ=255)
       gcggcgGAAGGGCATATTTTTGGTGGCTGTGAAtt                              <  1:18774860/35‑1 (MQ=255)
       gcggcgGAAGGGCATATTTTTGGTGGCTGTGAAtt                              <  1:12973034/35‑1 (MQ=255)
       gcggcgGAAGGGCATATTTTTGGTGGCTGTGAAtt                              <  1:4838128/35‑1 (MQ=255)
        cggcggAAGGGCATATTTTTGGTGGCTGgggggtt                             >  1:19740305‑M1/1‑28 (MQ=255)
        cggcggAAGGGCATATTTTTGGTGGCTGgggggtt                             >  1:6121710‑M1/1‑28 (MQ=255)
        cggcggAAGGGCATATTTTTGGTGGCTGggggatt                             >  1:12194571‑M1/1‑28 (MQ=255)
         ggcggAAGGGCATATTTTTGGTGGCTGgggggttt                            >  1:6150378‑M1/1‑27 (MQ=255)
         ggcggAAGGGCATATTTTTGGTGGCTGgggggttt                            >  1:9153661‑M1/1‑27 (MQ=255)
         ggcggAAGGGCATATTTTTGGTGGCTGgggggttt                            >  1:14316633‑M1/1‑27 (MQ=255)
         ggcggAAGGGCATATTTTTGGTGGCTGTGAATTTa                            <  1:2465310/35‑1 (MQ=255)
          gcggAAGGGCATATTTTTGGTGGCTGggggttttt                           >  1:18550005‑M1/1‑26 (MQ=255)
          gcggAAGGGCATATTTTTGGTGGCTGTGAATTTAt                           <  1:13183411/35‑1 (MQ=255)
           cggAAGGGCATATTTTTGGTGGCTGTGAATTTAtt                          <  1:12336048/35‑1 (MQ=255)
            ggAAGGGCATATTTTTGGTGGCTGggggttttttt                         >  1:1805405‑M1/1‑24 (MQ=255)
            ggAAGGGCATATTTTTGGTGGCTGTGAATTTATTc                         <  1:17933725/35‑1 (MQ=255)
            ggAAGGGCATATTTTTGGTGGCTGGGGATTTTttt                         >  1:15326620/1‑34 (MQ=21)
             gAAGGGCATATTTTTGGTGGCTGTGAATTTATTCg                        <  1:19673727/35‑1 (MQ=255)
              aaGGGCATATTTTTGGTGGCTGTGAATTTATTCGt                       <  1:9932803/35‑1 (MQ=255)
               aGGGCATATTTTTGGTGGCTGggggtttttttttt                      >  1:764069‑M1/1‑21 (MQ=255)
               aGGGCATATTTTTGGTGGCTGTGAATTTATTCGtt                      <  1:16857195/35‑1 (MQ=255)
                gggCATATTTTTGGTGGCTGTGAATTTATTCGTTa                     <  1:6370183/35‑1 (MQ=255)
                gggCATATTTTTGGTGGCTGTGAATTTATTCGTTa                     <  1:6459814/35‑1 (MQ=255)
                 ggCATATTTTTGGTGGCTGTGAATTTATTCGTTAt                    <  1:2021527/35‑1 (MQ=255)
                 ggCATATTTTTGGTGGCTGTGAATTTATTCGTTAt                    <  1:4236006/35‑1 (MQ=255)
                 ggCATATTTTTGGTGGCTGTGAATTTATTCGTTAt                    <  1:6724981/35‑1 (MQ=255)
                 ggCATATTTTTGGTGGCTGTGAATTTATTCGTTAt                    <  1:8923519/35‑1 (MQ=255)
                   cATATTTTTGGTGGCTGTGAATTTATTCGTTATGa                  <  1:16305802/35‑1 (MQ=255)
                   cATATTTTTGGTGGCTGTGAATTTATTCGTTATGa                  <  1:11917360/35‑1 (MQ=255)
                    atatTTTTGGTGGCTGTGAATTTATTCGTTATGAc                 <  1:11377045/35‑1 (MQ=255)
                    atatTTTTGGTGGCTGTGAATTTATTCGTTATGAc                 <  1:13337334/35‑1 (MQ=255)
                    atatTTTTGGTGGCTGTGAATTTATTCGTTATGAc                 <  1:2092689/35‑1 (MQ=255)
                    atatTTTTGGTGGCTGTGAATTTATTCGTTATGAc                 <  1:8539517/35‑1 (MQ=255)
                     tatTTTTGGTGGCTGTGAATTTATTCGTTATGACg                <  1:19921928/35‑1 (MQ=255)
                     tatTTTTGGTGGCTGTGAATTTATTCGTTATGACg                <  1:11436159/35‑1 (MQ=255)
                     tatTTTTGGTGGCTGTGAATTTATTCGTTATGACg                <  1:19113347/35‑1 (MQ=255)
                     tatTTTTGGTGGCTGTGAATTTATTCGTTATGACg                <  1:9532890/35‑1 (MQ=255)
                     tatTTTTGGTGGCTGTGAATTTATTCGTTATGACg                <  1:7054575/35‑1 (MQ=255)
                     tatTTTTGGTGGCTGTGAATTTATTCGTTATGACg                <  1:4092337/35‑1 (MQ=255)
                     tatTTTTCGTGGCTGTGAATTTATTCGTTATGACg                <  1:15996188/35‑1 (MQ=255)
                      atTTTTGGTGGCTGTGAATTTATTCGTTATGACGa               <  1:7430601/35‑1 (MQ=255)
                      atTTTTGGTGGCTGTGAATTTATTCGTTATGACGa               <  1:1758434/35‑1 (MQ=255)
                       tttttGGTGGCTGTGAATTTATTCGTTATGACGAt              <  1:18392526/35‑1 (MQ=255)
                       tttttGGTGGCTGTGAATTTATTCGTTATGACGAt              <  1:19351542/35‑1 (MQ=255)
                        ttttGGTGGCTGTGAATTTATTCGTTATGACGATc             <  1:2735629/35‑1 (MQ=255)
                         tttGGTGGCTGTGAATTTATTCGTTATGACGATCg            <  1:4461583/35‑1 (MQ=255)
                         tttGGTGGCTGTGAATTTATTCGTTATGACGATCg            <  1:11693443/35‑1 (MQ=255)
                         tttGGTGGCTGTGAATTTATTCGTTATGACGATCg            <  1:8226529/35‑1 (MQ=255)
                         tttGGTGGCTGTGAATTTATTCGTTATGACGATCg            <  1:9350370/35‑1 (MQ=255)
                         tttGGTGGCTGTGAATTTATTCGTTATGACGATCg            <  1:18285812/35‑1 (MQ=255)
                         tttGGTGGCTGTGAATTTATTCGTTATGACGATCg            <  1:9811751/35‑1 (MQ=255)
                          ttGGTGGCTGTGAATTTATTCGTTATGACGATCGc           <  1:1117534/35‑1 (MQ=255)
                          ttGGTGGCTGTGAATTTATTCGTTATGACGATCGc           <  1:6646247/35‑1 (MQ=255)
                          ttGGTGGCTGTGAATTTATTCGTTATGACGATCGc           <  1:13452281/35‑1 (MQ=255)
                           tggtggCTGTGAATTTATTCGTTATGACGATCGcc          <  1:12250926/35‑1 (MQ=255)
                           tggtggCTGTGAATTTATTCGTTATGACGATCGcc          <  1:12712945/35‑1 (MQ=255)
                           tggtggCTGTGAATTTATTCGTTATGACGATCGcc          <  1:15232127/35‑1 (MQ=255)
                           tggtggCTGTGAATTTATTCGTTATGACGATCGcc          <  1:2298990/35‑1 (MQ=255)
                           tggtggCTGTGAATTTATTCGTTATGACGATCGcc          <  1:3406203/35‑1 (MQ=255)
                           tggtggCTGTGAATTTATTCGTTATGACGATAGcc          <  1:17105195/35‑1 (MQ=255)
                            ggtggCTGTGAATTTATTCGTTATGACGATCGccc         <  1:12815096/35‑1 (MQ=255)
                            ggtggCTGTGAATTTATTCGTTATGACGATCGccc         <  1:1820134/35‑1 (MQ=255)
                             gtggCTGTGAATTTATTCGTTATGACGATCGcccc        <  1:5090596/35‑1 (MQ=255)
                             gtggCTGTGAATTTATTCGTTATGACGATCGcccc        <  1:15112277/35‑1 (MQ=255)
                             gtggCTGTGAATTTATTCGTTATGACGATCGcccc        <  1:19158850/35‑1 (MQ=255)
                               ggCTGTGAATTTATTCGTTATGACGATCGCCCCTg      <  1:6851006/35‑1 (MQ=255)
                               ggCTCTGAATTTATTCGTTATGACGATCGCCCCTg      >  1:2583751/1‑35 (MQ=255)
                               ggCTATGAATTTATTCGTTATGACGATCGCCCCTg      <  1:8320645/35‑1 (MQ=255)
                                gCTGTGAATTTATTCGTTATGACGATCGCCCCTgg     <  1:4551542/35‑1 (MQ=255)
                                gCTGTGAATTTATTCGTTATGACGATCGCCCCTgg     <  1:12462151/35‑1 (MQ=255)
                                gCTGTGAATTTATTCGTTATGACGATCGCCCCTgg     <  1:5450053/35‑1 (MQ=255)
                                gCTGTGAATTTATTCGTTATGACGATCGCCCCTgg     <  1:17289987/35‑1 (MQ=255)
                                gCTGTGAATTTATTCGTTATGACGATCGCCCCTgg     >  1:15841205/1‑35 (MQ=255)
                                 cTGTGAATTTATTCGTTATGACGATCGCCCCTGGa    >  1:4379130/1‑35 (MQ=255)
                                 cTGTGAATTTATTCGTTATGACGATCGCCCCTGGa    >  1:11676380/1‑35 (MQ=255)
                                 cTGTGAATTTATTCGTTATGACGATCGCCCCTGGa    >  1:11234192/1‑35 (MQ=255)
                                 cTGTGAATTTATTCGTTATGACGATCGCCCCTGGa    <  1:18904346/35‑1 (MQ=255)
                                 cTGTGAATTTATTCGTTATGACGATCGCCCCTGGa    >  1:19558667/1‑35 (MQ=255)
                                  tgtgAATTTATTCGTTATGACGATCGCCCCTGGAg   <  1:13288758/35‑1 (MQ=255)
                                  tgtgAATTTATTCGTTATGACGATCGCCCCTGGAg   >  1:19730158/1‑35 (MQ=255)
                                   gtgAATTTTTTCGTTATGACGATCGCCCCTGGAGc  <  1:13720527/35‑1 (MQ=255)
                                   gtgAATTTATTCGTTATGACGATCGCCCCTTGAGc  >  1:9856560/1‑35 (MQ=255)
                                   gtgAATTTATTCGTTATGACGATCGCCCCTGGAGc  >  1:15442458/1‑35 (MQ=255)
                                   gtgAATTTATTCGTTATGACGATCGCCCCTGGAGc  <  1:17359183/35‑1 (MQ=255)
                                   gtgAATTTATTCGTTATGACGATCGCCCCTGGAGc  >  1:10838517/1‑35 (MQ=255)
                                   gtgAATTTATTCGTTATGACGATCGCCCCCGGAGc  >  1:3914158/1‑35 (MQ=255)
                                   gtgAATTTATTCGTTATGACGATCGCACCTGGAGc  <  1:581579/35‑1 (MQ=255)
                                   |                                  
GCCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGC  >  REL606/2749566‑2749635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.