New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 601491 =81 (0.790)7 (0.100) 3/34 NT 10.1% coding (530/1134 nt) fepE regulator of length of O‑antigen component of lipopolysaccharide chains
?REL606 2785963 = 67 (0.920)coding (408/1338 nt) ygcS predicted transporter

Only 100 of 162 total aligned reads displayed.

ATGCGCCCAGCAAAATACCGCGATGGCGGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGAAT  >  REL606/2785929‑2785997
                                  |                                  
aaaacggtctgcgcctcttcactggttggcgcggg                                    >  1:19300923‑M2/35‑35 (MQ=255)
aaaacggtctgcgcctcttcactggttggcgcggg                                    >  1:17256023‑M2/35‑35 (MQ=255)
aaaacggtctgcgcctcttcactggttggcgcggg                                    >  1:8058793‑M2/35‑35 (MQ=255)
aaaacggtctgcgcctcttcactggttggcgcggg                                    >  1:3839043‑M2/35‑35 (MQ=255)
aTGCGCCCAGCAAAATACCGCGATGGCGGCGCggg                                    >  1:11151810/1‑35 (MQ=255)
 tGCGCCCAGCAAAATACCGCGATGGCGGCGCgggg                                   >  1:6913160/1‑35 (MQ=255)
 aaacggtctgcgcctcttcactggttggcgcgggg                                   >  1:12210413‑M2/34‑35 (MQ=255)
  gcgcCCAGCAAAATACCGCGATGGCGGCGCGGGGa                                  >  1:379874/1‑35 (MQ=255)
  aacggtctgcgcctcttcactggttggcggggGGa                                  >  1:20281262‑M2/33‑35 (MQ=255)
   cgcCCAGCAAAATACCGCGATGGCGGCGCGGGGaa                                 <  1:6598126/35‑1 (MQ=255)
    gcCCAGCAAAATACCGCGATGGCGGCGCGGGGaaa                                >  1:18827014/1‑35 (MQ=255)
    gcCCAGCAAAATACCGCGATGGCGGCGCGGGGaaa                                >  1:4629696/1‑35 (MQ=255)
    cggtctgcgcctcttcactggttggcgcggGGaaa                                >  1:6371232‑M2/31‑35 (MQ=255)
    cggtctgcgcctcttcactggttggcgcggGGaaa                                >  1:1372307‑M2/31‑35 (MQ=255)
     ggtctgcgcctcttcactggttggcgcggGGaaaa                               >  1:11089695‑M2/30‑35 (MQ=255)
     cccAGCAAAATACCGCGATGGCGGCGCGGGGaaaa                               <  1:11175604/35‑1 (MQ=255)
      gtctgcgcctcttcactggttggcgcggGaaaaaa                              >  1:2867617‑M2/29‑34 (MQ=255)
      gtctgcgcctcttcactggttggcgcggGGAAAAt                              >  1:7620071‑M2/29‑35 (MQ=255)
      gtctgcgcctcttcactggttggcgcggGGAAAAt                              >  1:5311233‑M2/29‑35 (MQ=255)
      ccAGCAAAATACCGCGATGGCGGCGCGGGGAAAAt                              >  1:16704491/1‑35 (MQ=255)
      ccAGCAAAATACCGCGATGGCGGCGCGGGGAAAAt                              >  1:7811616/1‑35 (MQ=255)
      ccAGCAAAATACCGCGATGGCGGCGCGGGGAAAAt                              <  1:19312898/35‑1 (MQ=255)
      ccAGCAAAATACCGCGATGGCGGCGCGGGGAAAAt                              >  1:8053021/1‑35 (MQ=255)
      ccAGCAAAATACCGCGATGGCGGCGCGGGGAAAAt                              <  1:11733020/35‑1 (MQ=255)
       tctgcgcctcttcactggttggcgcggGGAAAAtt                             >  1:8983690‑M2/28‑35 (MQ=255)
       cAGCAAAATACCGCGATGGCGGCGCGGGGAAAAtt                             <  1:10351940/35‑1 (MQ=255)
        ctgcgcctcttcactggttggcgcggGAAAAatta                            >  1:17296631‑M2/27‑34 (MQ=255)
        aGCAAAATACCGCGATGGCGGCGCGGGGAAAATTc                            <  1:2573752/35‑1 (MQ=255)
        aGCAAAATACCGCGATGGCGGCGCGGGGAAAATTc                            >  1:6904934/1‑35 (MQ=255)
         gCAAAATACCGCGATGGCGGCGCGGGGAAAATTca                           <  1:12030926/35‑1 (MQ=255)
         gCAAAATACCGCGATGGCGGCGCGGGGAAAATTca                           <  1:7395831/35‑1 (MQ=255)
         gCAAAATACCGCGATGGCGGCGCGGGGAAAATTca                           <  1:10226113/35‑1 (MQ=255)
         gCAAAATACCGCGATGGCGGCGCGGGGAAAATTca                           <  1:10307726/35‑1 (MQ=255)
          gcgcctcttcactggttggcgcggGGAaaattatc                          >  1:12868710‑M2/25‑32 (MQ=255)
          cAAAATACCGCGATGGCGGCGCGTGGAAAATTcag                          >  1:12874701/1‑35 (MQ=255)
          cAAAATACCGCGATGGCGGCGCGGGGAAAATTcag                          <  1:11842972/35‑1 (MQ=255)
          cAAAATACCGCGATGGCGGCGCGGGGAAAATTcag                          <  1:20498329/35‑1 (MQ=255)
          cAAAATACCGCGATGGCGGCGCGGGGAAAATTcag                          <  1:10738043/35‑1 (MQ=255)
          cAAAATACCGCGATGGCGGCGCGGGGAAAATAcag                          >  1:2990802/1‑35 (MQ=255)
           aaaaTACCGCGATGGCTGCGCGGGGAAAATTcagc                         >  1:7027974/1‑35 (MQ=255)
           aaaaTACCGCGATGGCGGCGCGGGGAAAATTcagc                         >  1:8558642/1‑35 (MQ=255)
           aaaaTACCGCGATGGCGGCGCGGGGAAAATTcagc                         <  1:10715966/35‑1 (MQ=255)
            aaaTACCGCGATGGCGGCGCGTGGAAAATTcagcc                        >  1:1985661/1‑35 (MQ=255)
            aaaTACCGCGATGGCGGCGCGGGGAAAATTcagcc                        <  1:6399310/35‑1 (MQ=255)
            aaaTACCGCGATGGCGGCGCGGGGAAAATTcagag                        >  1:18483747/1‑33 (MQ=255)
            aaaTACAGCGATGGCGGCGCGGGGAAAATTcagcc                        <  1:10524455/35‑1 (MQ=255)
             aaTACCGCGATGGCGGCGCGGGGAAAATTcagcca                       <  1:11508960/35‑1 (MQ=255)
             aaTACCGCGATGGCGGCGCGGGGAAAATTcagcca                       <  1:13121411/35‑1 (MQ=255)
              aTACCGCGATGGCGGCGCGGGGAAAATTtagccag                      >  1:17731129/1‑35 (MQ=255)
               tACCGCGATGGCGGCGCGGGGAAAATTaagccagc                     <  1:8544541/35‑1 (MQ=255)
                cccGAGATGGCGGCGCGGGGAAAATTCAGCCAGCa                    <  1:17476841/34‑1 (MQ=255)
                aCCGCGATGGCGGCGCGGGGAAAATTCAGCCAGCa                    <  1:6991410/35‑1 (MQ=255)
                 ccGCGATGGCGGCGCGTGGAAAATTCAGCCAGCaa                   >  1:15200619/1‑35 (MQ=255)
                 ccGCGATGGCGGCGCGGGGAAAATTCAGCCAGCaa                   <  1:11480503/35‑1 (MQ=255)
                 ccGCGATGGCGGCGCGGGGAAAAATCAGCCAGCaa                   >  1:5735719/1‑35 (MQ=255)
                  cgcgATGGGGGCGCGGGGAAAATTCAGCCAGCAAg                  <  1:18125931/35‑1 (MQ=255)
                  cgcgATGGCGGCGCGGGGAAAATTCAGCCAGCAAg                  <  1:1915852/35‑1 (MQ=255)
                  cgcgATGGCGGCGCGGGGAAAATTCAGCCAGCAAg                  <  1:808213/35‑1 (MQ=255)
                    cgATGGCGGCGCGGGGAAAATTCAGCCAGCAAGgt                >  1:15175878/1‑35 (MQ=255)
                    cgATGGCGGCGCGGGGAAAATTCAGCCAGCAAGgt                >  1:12759156/1‑35 (MQ=255)
                      aTGGCGGCGCGGGGAAAATTCAGCCAGCAAGgtgt              <  1:20248894/35‑1 (MQ=255)
                      aTGGCGGCGCGGGGAAAATTCAGCCAGCAAGgtgt              <  1:16723012/35‑1 (MQ=255)
                       tGGCGGCGCGGGGAAAATTCAGCCAGCAAGGtgtg             >  1:5465639/1‑35 (MQ=255)
                       tGGCGGCGCGGGGAAAATTCAGCCAGCAAGGtgtg             <  1:6226965/35‑1 (MQ=255)
                       tGGCGGCGCGGGGAAAATTCAGCCAGCAAGGtgtg             >  1:9575061/1‑35 (MQ=255)
                       tGGCGGCGCGGGGAAAATTCAGCCAGCAAGGtgtg             >  1:14773759/1‑35 (MQ=255)
                       tGGCGGCGCGGGGAAAATTCAGCCAGCAAGGtgtg             <  1:17634782/35‑1 (MQ=255)
                        ggcggcGCGGGGAAAATTCAGCCAGCAAGGTGTGa            <  1:20189116/35‑1 (MQ=255)
                         gcggcgCGGGGAAAATTCAGCCAGCAAGGTGTGAc           >  1:20409089/1‑35 (MQ=255)
                          cggcgCGGGGAAAATTCAGCCAGCAAGGTGTGAcc          >  1:11699688/1‑35 (MQ=255)
                          cggcgCGGGGAAAATTCAGCCAGCAAGGTGTGAcc          <  1:548732/35‑1 (MQ=255)
                          cggcgCGGGGAAAATTCAGCCAGCAAGGTGTGAcc          <  1:1011190/35‑1 (MQ=255)
                           ggcgcggGGAAAATTCAGCCAGCAAGGTGTGACCt         >  1:11440918‑M2/8‑35 (MQ=255)
                           ggcgcggGGAAAATTCAGCCAGCAAGGTGTGACCt         >  1:1798062‑M2/8‑35 (MQ=255)
                           ggcgcggGGAAAATTCAGCCAGCAAGGTGTGACCt         >  1:17771996‑M2/8‑35 (MQ=255)
                           ggcgcggGGAAAATTCAGCCAGCAAGGTGTGACCt         <  1:2060017‑M2/28‑1 (MQ=255)
                            gcgcggGGAAAATTCAGCCAGCAAGGTGTGACCTa        <  1:5526570‑M2/29‑1 (MQ=255)
                            gcgcggGGAAAATTCAGCCAGCAAGGTGTGACCTa        >  1:10781198‑M2/7‑35 (MQ=255)
                            gcgcggGGAAAATTCAGCCAGCAAGGTGTGACCTa        <  1:6165851‑M2/29‑1 (MQ=255)
                             cgcggGGAAAATTCAGCCAGCAAGGTGTGACCTAc       >  1:19686490‑M2/6‑35 (MQ=255)
                             cgcggGGAAAATTCAGCCAGCAAGGTGTGACCTAc       <  1:16313155‑M2/30‑1 (MQ=255)
                              gcggGGAAAATTCAGCCAGCAAGGTGTGACCTACt      >  1:5058229‑M2/5‑35 (MQ=255)
                              gcggGGAAAATTCAGCCAGCAAGGTGTGACCTACt      >  1:19578397‑M2/5‑35 (MQ=255)
                              gcggGGAAAATTCAGCCAGCAAGGTGTGACCTACt      <  1:18821020‑M2/31‑1 (MQ=255)
                              gcggGGAAAATTCAGCCAGCAAGGTGTGACCTACt      <  1:12483626‑M2/31‑1 (MQ=255)
                               cggGGAAAATTCAGCCAGCAAGGTGTGACCTACTg     >  1:1102675‑M2/4‑35 (MQ=255)
                               cggGGAAAATTCAGCCAGCAAGGTGTGACCTACTg     >  1:15099608‑M2/4‑35 (MQ=255)
                               cggGGAAAATTCAGCCAGCAAGGTGTGACCTACTg     >  1:5726514‑M2/4‑35 (MQ=255)
                               cggGGAAAATTCAGCCAGCAAGGTGTGACCTACTg     >  1:4753052‑M2/4‑35 (MQ=255)
                               cggGGAAAATTCAGCCAGCAAGGTGTGACCTACTg     <  1:2307384‑M2/32‑1 (MQ=255)
                                ggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGa    >  1:17005242‑M2/3‑35 (MQ=255)
                                ggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGa    <  1:14855203‑M2/33‑1 (MQ=255)
                                ggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGa    >  1:13222914‑M2/3‑35 (MQ=255)
                                ggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGa    >  1:6408998‑M2/3‑35 (MQ=255)
                                ggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGa    >  1:4864003‑M2/3‑35 (MQ=255)
                                ggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGa    >  1:4349756‑M2/3‑35 (MQ=255)
                                 gGGAAAATTCAGCCAGCAAGGTGTGACCTACTGaa   >  1:17400440‑M2/2‑35 (MQ=255)
                                 gGGAAAATTCAGCCAGCAAGGTGTGACCTACTGaa   <  1:12096673‑M2/34‑1 (MQ=255)
                                 gGGAAAATTCAGCCAGCAAGGTGTGACCTACTGaa   <  1:9329769‑M2/34‑1 (MQ=255)
                                 gGGAAAATTCAGCCAGCAAGGTGTGACCTACTGaa   >  1:9365553‑M2/2‑35 (MQ=255)
                                  |                                  
ATGCGCCCAGCAAAATACCGCGATGGCGGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGAAT  >  REL606/2785929‑2785997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.