New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 924268 =101 (0.980)9 (0.120) 3/36 NT 13.4% coding (722/1431 nt) ybjT conserved protein with NAD(P)‑binding Rossmann‑fold domain
?REL606 = 4366448 41 (0.530)coding (1078/3324 nt) yjeP predicted mechanosensitive channel

Only 100 of 116 total aligned reads displayed.

AGCGGCTGACCGTCGGCCTGATGAATTTGCCGTAGCAGCGGCTGTTTATTAAGCAGATCCTCATAACGT  >  REL606/4366414‑4366482
                                  |                                  
aGCGGCTGACCGTCGGCCTGATGAATTTGCCGTag                                    <  1:17455278/35‑1 (MQ=255)
  cGGCTGACCGTCGGCCTGATGAATTTGCCGTAGca                                  >  1:8875143‑M2/1‑33 (MQ=255)
  cGGCTGACCGTCGGCCTGATGAATTTGCCGTAGca                                  >  1:221937‑M2/1‑33 (MQ=255)
   ggCTGCCCGTCGGCCTGATGAATTTGCCGTAGcag                                 >  1:336282‑M2/1‑32 (MQ=255)
   ggCTGACCGTCGGCCTGATGAATTTGCCGTAGcag                                 <  1:16996425‑M2/35‑4 (MQ=255)
   ggCTGACCGTCGGCCTGATGAATTTGCCGGaggag                                 >  1:5528021/1‑35 (MQ=37)
   ggCTGACCGTCGGCCTGATGAATTTGCCGGagccg                                 >  1:5808477/1‑33 (MQ=37)
   ggCTGACCGTCGGCCTGATGAATTTGCCGGagaag                                 >  1:15978256/1‑35 (MQ=37)
    gCTGCCCGTCGGCCTGATGAATTTGCCGTAGcagc                                >  1:1429759‑M2/1‑31 (MQ=255)
    gCTGACCGTCGGCCTGATGAATTTGCCGTAGcagc                                <  1:16614491‑M2/35‑5 (MQ=255)
     cTGCCCGTCGGCCTGATGAATTTGCCGTAGcagcg                               >  1:2777630‑M2/1‑30 (MQ=255)
     cTGACCGTCGGCCTGATGAATTTGCCGTAGcagcg                               >  1:18823459‑M2/1‑30 (MQ=255)
     cTGACCGTCGGCCTGATGAATTTGCCGTAGcagcg                               <  1:13951773‑M2/35‑6 (MQ=255)
     cTGACCGTCGGCCTGATGAATTTGCCGTAGcagcg                               >  1:6336475‑M2/1‑30 (MQ=255)
     cTGACCGTCGGCCTGATGAATTTGCCGTAGcagcg                               <  1:7030825‑M2/35‑6 (MQ=255)
     cTGACCGTCGGCCTGATGAATTTGCCGTAGcagcg                               <  1:10687930‑M2/35‑6 (MQ=255)
     cTGACCGTCGGCCTGATGAATTTGCCGTAGcagcg                               <  1:8344730‑M2/35‑6 (MQ=255)
      tGACCGTCTGCCTGATGAATTTGCCGGAGCAGCgg                              >  1:12780073/1‑35 (MQ=37)
      tGACCGTCGGCCTGATGAATTTGCCGTAGcagcgg                              <  1:10671536‑M2/35‑7 (MQ=255)
      tGACCGTCGGCCTGATGAATTTGCCGTAGcagcgg                              >  1:8651467‑M2/1‑29 (MQ=255)
      tGACCGTCGGCCTGATGAATTTGCCCTAGCAGGgg                              >  1:15168660/1‑35 (MQ=37)
       gACCGTCGGCCTTATGAATTTGCCGTAGCAGCGGc                             >  1:1201147/1‑35 (MQ=255)
       gACCGTCGGCCTGATGAATTTGCCGTAGcagcggg                             <  1:18430381‑M2/35‑8 (MQ=255)
       gACCGTCGGCCTGATGAATTTGCCGTAGCAGCGGc                             <  1:14782103/35‑1 (MQ=255)
        cccGTCGGCCTGATGAATTTGCCGTAGCAGCGGCt                            <  1:3437676/34‑1 (MQ=255)
        cccGTCGGCCTGATGAATTTGCCGTAGCAGCGGCt                            <  1:13051917/34‑1 (MQ=255)
        aCCGTCGGCCTGATGAATTTGCCGTAGcagcgggt                            <  1:15331849‑M2/35‑9 (MQ=255)
        aCCGTCGGCCTGATGAATTTGCCGTAGcagcgggg                            <  1:3942359‑M2/35‑9 (MQ=255)
         ccGTCGGCCTGATGAATTTGCCGTAGCAGGGGcgg                           >  1:1985052/1‑33 (MQ=37)
         ccGTCGGCCTGATGAATTTGCCGTAGCAGCGGCTg                           <  1:13314544/35‑1 (MQ=255)
         ccGTCGGCCTGATGAATTTGCCGTAGCAGCGGCTg                           <  1:11193888/35‑1 (MQ=255)
          cGTCGGCCTGATGAATTTGCCGTAGCAGGGGcggg                          >  1:9939628/1‑32 (MQ=37)
           gTCGGCCTGATGAATTTGCCGTAGcagcgggtggg                         <  1:8485821‑M2/35‑12 (MQ=255)
           gTCGGCCTGATGAATTTGCCGTAGcagcgggtggg                         <  1:3206408‑M2/35‑12 (MQ=255)
           gTCGGCCTGATGAATTTGCCGTAGcagcgggtggg                         <  1:311831‑M2/35‑12 (MQ=255)
           gTCGGCCTGATGAATTTGCCGTAGcagcggggggg                         <  1:4885443‑M2/35‑12 (MQ=255)
           gTCGGCCTGATGAATTTGCCGTAGCAGCGGCTGtt                         <  1:7593314/35‑1 (MQ=255)
           gTCGGCCTGATGAATTTGCCGTAGCAGCGGCTGtt                         <  1:353938/35‑1 (MQ=255)
           gTCGGCCTGATGAATTTGCCGTAGCAGCGGCTGtt                         <  1:14100660/35‑1 (MQ=255)
           gTCGGCCTGATGAATTTGCCGTAGCAGCGGCTGtt                         <  1:20572912/35‑1 (MQ=255)
            tCGGCCTGATGAATTTGCCGTAGcagcgggtgggg                        <  1:1547205‑M2/35‑13 (MQ=255)
            tCGGCCTGATGAATTTGCCGTAGCAGCGGCTGttt                        <  1:4244107/35‑1 (MQ=255)
            tCGCCCTGATGAATTTGCCGTAGCAGCGGCTGttt                        <  1:19362457/35‑1 (MQ=255)
             cGGCCTGATGAATTTGCCGTAGcagcgggtggggg                       <  1:12571008‑M2/35‑14 (MQ=255)
             cGGCCTGATGAATTTGCCGTAGCAGCGGCTGTtta                       <  1:3066461/35‑1 (MQ=255)
              ggCCTGATGAATTTGCCGTAGcagcgggtgggtgg                      <  1:15744185‑M2/35‑15 (MQ=255)
              ggCCTGATGAATTTGCCGTAGcagcgggtgggggg                      <  1:5400478‑M2/35‑15 (MQ=255)
              ggCCTGATGAATTTGCCGTAGcagcgggtgggggg                      <  1:2584000‑M2/35‑15 (MQ=255)
              ggCCTGATGAATTTGCCGTAGCAGCGGCTGTttat                      <  1:11905180/35‑1 (MQ=255)
              ggCCTGATGAATTTGCCGTAGCAGCGGCTGTttat                      <  1:1354173/35‑1 (MQ=255)
               gCCTGATGAATTTGCCGTAGcagcgggtggggggg                     <  1:16142693‑M2/35‑16 (MQ=255)
               gCCTGATGAATTTGCCGTAGCAGCGGCTGTttatt                     <  1:6165557/35‑1 (MQ=255)
               gCCTGATGAATTTGCCGTAGCAGCGGCTGTttatt                     <  1:5128016/35‑1 (MQ=255)
               gCCTGATGAATTTGCCGTAGCAGCGGCTGTttatt                     <  1:8085515/35‑1 (MQ=255)
               gCCTGATGAATTTGCCGTAGCAGCGGCTGTttatt                     <  1:2586456/35‑1 (MQ=255)
               gCCTGATGAATTTGCCGTAGCAGCGGCTGTttatt                     <  1:14680724/35‑1 (MQ=255)
                ccTGATGAATTTGCCGTAGcagcgggtgggggggg                    <  1:165442‑M2/35‑17 (MQ=255)
                 cTGATGAATTTGCCGTAGcagcgggtggggggggg                   <  1:7444544‑M2/35‑18 (MQ=255)
                 cTGATGAATTTGCCGTAGCAGCGGCTGTTTATTaa                   <  1:15102938/35‑1 (MQ=255)
                 cTGATGAATTTGCCGTAGCAGCGGCTGTTTATTaa                   <  1:9015224/35‑1 (MQ=255)
                 cTGATGAATTTGCCGTAGCAGCGGCTGTTTATTaa                   <  1:13092742/35‑1 (MQ=255)
                   gatgaATTTGCCGTAGCAGCGGCTGTTTATTAAGc                 <  1:15422550/35‑1 (MQ=255)
                   gatgaATTTGCCGTAGCAGCGGCTGTTTATTAAGc                 <  1:10506620/35‑1 (MQ=255)
                   gatgaATTTGCCGTAGCAGCGGCTGTTTATTAAGc                 <  1:16731968/35‑1 (MQ=255)
                   gatgaATTTGCCGTAGCAGAGGCTGTTTATTAAGc                 <  1:4928192/35‑1 (MQ=255)
                     tgaATTTGCCGTAGCAGCGGCTGTTTATTAAGCAg               <  1:10129603/35‑1 (MQ=255)
                      gaATTTGCCGTAGCAGCGGCTGTTTATTAAGCAGa              <  1:9431129/35‑1 (MQ=255)
                      gaATTTGCCGTAGCAGCGGCTGTTTATTAAGCAGa              <  1:12372487/35‑1 (MQ=255)
                       aaTTTGCCGTAGCAGCGGCTGTTTATTAAGCAGAt             <  1:5417068/35‑1 (MQ=255)
                       aaTTTGCCGTAGCAGCGGCTGTTTATTAAGCAGAt             <  1:18945764/35‑1 (MQ=255)
                       aaTTTGCCGTAGCAGCGGCTGTTTATTAAGCAGAt             <  1:9753408/35‑1 (MQ=255)
                       aaTTTGCCGTAGCAGCGGCTGTTTATTAAGCAGAt             <  1:2965/35‑1 (MQ=255)
                       aaTTTGCCGTAGCAGCGGCTGTTTATTAAGCAGAt             <  1:2813417/35‑1 (MQ=255)
                        aTTTGCCGTAGCAGCGGCTGTTTATTAAGCAGATc            <  1:17167032/35‑1 (MQ=255)
                        aTTTGCCGTAGCAGCGGCTGTTTATTAAGCAGATc            <  1:6771821/35‑1 (MQ=255)
                        aTTTGCCGTAGCAGCGGCTGTTTATTAAGCAGATc            <  1:8464989/35‑1 (MQ=255)
                         tttGCCGTAGCAGCGGCTGTTTATTAAGCAGAtac           <  1:17063323/35‑3 (MQ=255)
                          ttGCCGTAGCAGCGGCTGTTTATTAAGCAGATCCt          <  1:4814878/35‑1 (MQ=255)
                          ttGCCGTAGCAGCGGCTGTTTATTAAGCAGATCCt          <  1:13009675/35‑1 (MQ=255)
                          ttGCCGTAGCAGCGGCTGTTTATTAAGCAGATCCt          <  1:15298737/35‑1 (MQ=255)
                          ttGCCGTAGAAGCGGCTGTTTATTAAGCAGATCCt          <  1:10118075/35‑1 (MQ=255)
                           tGCCGTAGCAGCGGCTGTTTATTAAGCAGATCCTc         <  1:18427412/35‑1 (MQ=255)
                           tGCCGTAGCAGCGGCTGTTTATTAAGCAGATCCTc         <  1:2436198/35‑1 (MQ=255)
                           tGCCGTAGCAGCGGCTGTTTATTAAGCAGATCCTc         <  1:8191951/35‑1 (MQ=255)
                            gCCGTAGCAGCGGCTGTTTATTAAGCAGATCCTCa        <  1:4111640/35‑1 (MQ=255)
                             ccGTAGCAGCGGCTGTTTATTAAGCAGATCCTCAt       <  1:3367330/35‑1 (MQ=255)
                             cagTAGCAGCGGCTGTTTATTAAGCAGATCCTCAt       <  1:14262008/33‑1 (MQ=255)
                              cGTAGCAGCGGCTGTTTATTAAGCAGATCCTCATa      <  1:7556286/35‑1 (MQ=255)
                              cGTAGCAGCGGCTGTTTATTAAGCAGATCCTCATa      <  1:10392170/35‑1 (MQ=255)
                               gTAGCAGCGGCTGTTTATTAAGCAGATCCTCATaa     <  1:16070532/35‑1 (MQ=255)
                               gTAGCAGCGGCTGTTTATTAAGCAGATCCTCATaa     <  1:746721/35‑1 (MQ=255)
                               gTAGCAGCGGCTGTTTATTAAGCAGATCCTCATaa     <  1:6129767/35‑1 (MQ=255)
                               gTAGCAGCGGCTGTTTATTAAGCAGATCCTCATaa     <  1:17623184/35‑1 (MQ=255)
                               gTAGCAGCGGCTGTTTATTAAGCAGATCCTCATaa     <  1:14546323/35‑1 (MQ=255)
                                tAGCAGCGGCTGTTTATTAAGCAGATCCTCATAAc    <  1:9434370/35‑1 (MQ=255)
                                tAGCAGCGGCTGTTTATTAAGCAGATCCTCATAAc    <  1:17820555/35‑1 (MQ=255)
                                gagcagcGGCTGTTTATTAAGCAGATCCTCATAAc    <  1:20112804/34‑1 (MQ=255)
                                 agcagcGGCTGTTTATTAAGCAGATCCTCATAACg   <  1:3776121/35‑1 (MQ=255)
                                 agcagcGGCTGTTTATTAAGCAGATCCTCATAACg   <  1:12285075/35‑1 (MQ=255)
                                  gcagaGGCTGTTTATTAAGCAGATCCTCATAACGt  <  1:16559522/35‑1 (MQ=255)
                                  |                                  
AGCGGCTGACCGTCGGCCTGATGAATTTGCCGTAGCAGCGGCTGTTTATTAAGCAGATCCTCATAACGT  >  REL606/4366414‑4366482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.