New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1306327 =87 (0.850)9 (0.140) 3/30 NT 15.9% intergenic (‑88/+283) cls/kch cardiolipin synthetase/voltage‑gated potassium channel
?REL606 = 3884923 41 (0.640)coding (1072/1890 nt) gidA glucose‑inhibited division protein A

Only 100 of 253 total aligned reads displayed.

ATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGCGGGGGTATAATGACCATT  >  REL606/1306293‑1306357
                                  |                              
ggcgcacatcatacaccaaatgcaccagcctttTc                                >  1:9517762‑M1/34‑35 (MQ=255)
ggcgcacatcatacaccaaatgcaccagcctttTc                                >  1:9156224‑M1/34‑35 (MQ=255)
cagcaaagaacagcccctggataaacttgctctcc                                <  1:17613835‑M1/1‑1 (MQ=255)
cagcaaagaacagcccctggataaacttgctctcc                                <  1:10053639‑M1/1‑1 (MQ=255)
 tCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCa                               <  1:16393630/35‑1 (MQ=255)
 tCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCa                               <  1:871400/35‑1 (MQ=255)
 tCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCa                               <  1:14398327/35‑1 (MQ=255)
 tCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCa                               <  1:5149968/35‑1 (MQ=255)
 gcgcacatcatacaccaaatgcaccagcctttTCa                               <  1:20551576‑M1/3‑1 (MQ=255)
 agcaaagaacagcccctggataaacttgctctcCa                               <  1:15597200‑M1/2‑1 (MQ=255)
  cgcacatcatacaccaaatgcaccagcctttTCAg                              <  1:4476186‑M1/4‑1 (MQ=255)
  cgcacatcatacaccaaatgcaccagcctttTCAg                              <  1:10649232‑M1/4‑1 (MQ=255)
  cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAg                              <  1:2183317/35‑1 (MQ=255)
   tGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGc                             >  1:19103732/1‑35 (MQ=255)
   tGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGc                             <  1:13327805/35‑1 (MQ=255)
   gcacatcatacaccaaatgcaccagcctttTCAGc                             <  1:14908225‑M1/5‑1 (MQ=255)
   gcacatcatacaccaaatgcaccagcctttTCAGc                             <  1:14483490‑M1/5‑1 (MQ=255)
   gcacatcatacaccaaatgcaccagcctttTCAGc                             >  1:19363973‑M1/31‑35 (MQ=255)
   gcacatcatacaccaaatgcaccagcctttTCAGc                             >  1:13161140‑M1/31‑35 (MQ=255)
   gcacatcatacaccaaatgcaccagcctttTCAGc                             <  1:13010417‑M1/5‑1 (MQ=255)
   gcacatcatacaccaaatgcaccagcctttTCAGc                             >  1:12818719‑M1/31‑35 (MQ=255)
   gcacatcatacaccaaatgcaccagcctttTCAGc                             >  1:2902803‑M1/31‑35 (MQ=255)
   caaagaacagcccctggataaacttgctctcCAGc                             <  1:11525482‑M1/4‑1 (MQ=255)
    cacatcatacaccaaatgcaccagcctttTCAGCg                            >  1:7804073‑M1/30‑35 (MQ=255)
    cacatcatacaccaaatgcaccagcctttTCAGCg                            <  1:16540506‑M1/6‑1 (MQ=255)
    aaagcacagcccctggataaacttgctctcCAGCg                            <  1:5788795‑M1/5‑1 (MQ=255)
     gCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGt                           <  1:17766402/35‑1 (MQ=255)
     gCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGt                           >  1:7975748/1‑35 (MQ=255)
     gCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGt                           >  1:14352045/1‑35 (MQ=255)
     gCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGt                           <  1:20129171/35‑1 (MQ=255)
     acatcatacaccaaatgcaccagcctttTCAGCGt                           <  1:18615944‑M1/7‑1 (MQ=255)
     acatcatacaccaaatgcaccagcctttTCAGCGt                           <  1:9236788‑M1/7‑1 (MQ=255)
     acatcatacaccaaatgcaccagcctttTCAGCGt                           <  1:13383587‑M1/7‑1 (MQ=255)
     acatcatacaccaaatgcaccagcctttTCAGCGt                           >  1:7286466‑M1/29‑35 (MQ=255)
     aagaacagcccctggataaacttgctctcCAGCGt                           <  1:20103935‑M1/6‑1 (MQ=255)
     aagaacagcccctggataaacttgctctcCAGCGt                           <  1:11589656‑M1/6‑1 (MQ=255)
     aagaacagcccctggataaacttgctctcCAGCGt                           <  1:8205198‑M1/6‑1 (MQ=255)
      cAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTc                          >  1:5600474/1‑35 (MQ=255)
      cAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTc                          <  1:2653047/35‑1 (MQ=255)
      agaacagcccctggataaacttgctctcCAGCGTc                          <  1:4013723‑M1/7‑1 (MQ=255)
      agaacagcccctggataaacttgctctcCAGCGTc                          <  1:7032122‑M1/7‑1 (MQ=255)
      agaacagcccctggataaacttgctctcCAGCGTc                          <  1:4581970‑M1/7‑1 (MQ=255)
       gaacagcccctggataaacttgctctcCAGCGTcg                         <  1:16721411‑M1/8‑1 (MQ=255)
       ccccagcccctggataaacttgctctcCAGCGTcg                         >  1:7379626‑M1/28‑35 (MQ=255)
       atcatacaccaaatgcaccggcctttTCAGCGTcg                         >  1:163039‑M1/27‑35 (MQ=255)
       atcatacaccaaatgcaccagcctttTCAGCGTcg                         <  1:15361005‑M1/9‑1 (MQ=255)
       aaaTAAAAACGCGGGAAAAGCACTGGTCAGCGTcg                         <  1:10143958/35‑1 (MQ=255)
        tcatacaccaaatgcaccagcctttTCAGCGTcgg                        <  1:11264116‑M1/10‑1 (MQ=255)
        aacagcccctggataaacttgctctcCAGCgtctg                        <  1:13900055‑M1/9‑3 (MQ=255)
        aacagcccctggataaacttgctctcCAGCGTcgg                        <  1:20286921‑M1/9‑1 (MQ=255)
        aacagcccctggataaacttgctctcCAGCGTcgg                        <  1:4270302‑M1/9‑1 (MQ=255)
         aTAAAAACGCGGGAAAAGCACTGGTCAGCGTcggg                       <  1:15673268/35‑1 (MQ=255)
         aTAAAAACGCGGGAAAAGCACTGGTCAGCGTcggg                       >  1:15910464/1‑35 (MQ=255)
         aTAAAAACGCGGGAAAAGCACTGGTCAGCGTcggg                       <  1:17342376/35‑1 (MQ=255)
          cagcccctggataaacttgctctcCAGCGTcgggg                      <  1:5924531‑M1/11‑1 (MQ=255)
          cagcccctggataaacttgctctcCAGCGTcgggg                      <  1:1820504‑M1/11‑1 (MQ=255)
           tacaccaaatgcaccagcctttTCAGCGTcggggg                     <  1:5281915‑M1/13‑1 (MQ=255)
           agccccttgataaacttgctctcCAGCGTcggggg                     <  1:10288919‑M1/12‑1 (MQ=255)
           agcccctggataaacttgctctcCAGCGTcggggg                     <  1:10780355‑M1/12‑1 (MQ=255)
           agcccctggataaacctgctctcCAGCGTcggggg                     <  1:6770817‑M1/12‑1 (MQ=255)
           agcccctcgataaacttgctctcCAGCGTcggggg                     <  1:11057782‑M1/12‑1 (MQ=255)
           aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggg                     <  1:8365631/35‑1 (MQ=255)
            gcccctggataaacttgctctcCAGCGtcgggggg                    <  1:1986119‑M1/13‑2 (MQ=255)
            gcccctggataaacttgctctcCAGCGtcgggggg                    <  1:8172764‑M1/13‑2 (MQ=255)
            gcccctggataaacttgctctcCAGCGtcgggggg                    <  1:7062122‑M1/13‑2 (MQ=255)
              ccctggataaacttgctctcCAGcgtcgggggggg                  <  1:6541698‑M1/15‑4 (MQ=255)
              accaaatgcaccagcctttTCAGcgtcgggggggg                  <  1:17395240‑M1/16‑4 (MQ=255)
              accaaatgcaccagcctttTCAGcgtcgggggggg                  <  1:12582524‑M1/16‑4 (MQ=255)
              aaCGCGGGAAAAGCACTGGTCAGCGTcgggggcgg                  >  1:5020385/1‑35 (MQ=255)
               cctggataaacttgctctcCAGCGTcggggggggg                 <  1:16854373‑M1/16‑1 (MQ=255)
               cctggataaacttgctctcCAGCGTcggggggggg                 <  1:482860‑M1/16‑1 (MQ=255)
               ccaaatgcaccagcctttTCAGCGTcggggggggg                 <  1:20593097‑M1/17‑1 (MQ=255)
               ccaaatgcaccagcctttTCAGCGTcggggggggg                 <  1:5101163‑M1/17‑1 (MQ=255)
               aCGCGGGAAAAGCACTGGTCAGCGTcgggggcggg                 <  1:5425988/35‑1 (MQ=255)
               aCGCGGGAAAAGCACTGGTCAGCGTcgggggcggg                 <  1:19245348/35‑1 (MQ=255)
               aCGCGGGAAAAGCACTGGTCAGCGTcgggggcggg                 >  1:3147209/1‑35 (MQ=255)
                caaatgcaccagcctttTCAGCGTcgggggggggg                <  1:12209947‑M1/18‑1 (MQ=255)
                 tggataaacttgctctcCAGCGTcggggggggggg               <  1:6403791‑M1/18‑1 (MQ=255)
                 gcgGGAAAAGCACTGGTCAGCGTcgggggcggggg               <  1:18372810/35‑1 (MQ=255)
                 gcgGGAAAAGCACTGGTCAGCGTcgggggcggggg               <  1:17996145/35‑1 (MQ=255)
                  ggataaacttgctctcCAGCGtcgggggggggggg              <  1:3710290‑M1/19‑2 (MQ=255)
                  aatgcaccagcctttTCAGCGtcgggggggggggg              <  1:6320816‑M1/20‑2 (MQ=255)
                    ggAAAAGCACTGGTCAGCGTCGGGGGCGGGGGtat            <  1:12937559/35‑1 (MQ=255)
                    ggAAAAGCACTGGTCAGCGTCGGGGGCGGGGGtat            <  1:3489578/35‑1 (MQ=255)
                     gAAAAGCACTGGTCAGCGTCGGGGGCGGGGGtata           <  1:2007744/35‑1 (MQ=255)
                     gAAAAGCACTGGTCAGCGTCGGGGGCGGGGGtata           <  1:19786519/35‑1 (MQ=255)
                     gAAAAGCACTGGTCAGCGTCGGGGGCGGGGGtata           <  1:19177848/35‑1 (MQ=255)
                      aaaaGCACTGGTCAGCGTCGGGGGCGGGGGTATaa          <  1:10393064/35‑1 (MQ=255)
                       aaaGCACTGGTCAGCGTCGGGGGCGGGGGGATAAt         >  1:1448262/1‑35 (MQ=255)
                        aaGCACTGGTCAGCGTCGGGGGCGGGGGTATAATg        <  1:8559725/35‑1 (MQ=255)
                         aGCACTGGTCAGCGTCGGGGGCGGGGGTATAATGa       <  1:6617072/35‑1 (MQ=255)
                         aGCACTGGTCAGCGTCGGGGGCGGGGGGATAATGa       >  1:7546705/1‑35 (MQ=255)
                          gCACTGGTCAGCGTCGGGGGCGGGGGTATAATGAc      >  1:14767284/1‑35 (MQ=255)
                           cACTGGTCAGCGTCGGGGGCGGGGGTATAATGAcc     <  1:19552105/35‑1 (MQ=255)
                           cACTGGTCAGCGTCGGGGGCGGGGGTATAATGAcc     <  1:10975586/35‑1 (MQ=255)
                            aCTGGTCAGCGTCGGGGGCGGGGGTATAATGACCa    <  1:1533170/35‑1 (MQ=255)
                            aCTGGTAAGCGTCGGGGGCGGGGGTATAATGACCa    <  1:2347257/35‑1 (MQ=255)
                             cTGGTCAGCGTCGGGGGCGGGGGTATAATGACCAt   <  1:3566892/35‑1 (MQ=255)
                             cTGGTCAGCGTCGGGGGCGGGGGTATAATGACCAt   <  1:15799598/35‑1 (MQ=255)
                             cTGGTCAGCGTCGGGGGCGGGGGTATAATGACCAt   >  1:11714167/1‑35 (MQ=255)
                                  |                              
ATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGCGGGGGTATAATGACCATT  >  REL606/1306293‑1306357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.