New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 101794468 (0.660)11 (0.110) 7/48 NT 11.4% coding (1638/2601 nt) ycbS predicted outer membrane usher protein
?REL606 = 3424887 103 (1.000)intergenic (+105/‑21) nirD/nirC nitrite reductase small subunit/nitrite transporter

AACTTACTGGCATACGGATCAACAGGATCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1017911‑1017944
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAACAAAAAATAAAA  <  REL606/3424887‑3424871
                                                   
AACTTACTGGCATACGGATCAACAGGATCGGCTAA                  >  1:9637745/1‑35
AACTTACTGGCATACGGATCAACAGGATCGGCTAA                  >  1:19656895/1‑35
AACTTACTCGCATACGGATCAACAGGATCGGCTAA                  >  1:1787351/1‑35
  CTTACTGGCATACGGATCAACAGGATCGGCTAAAA                >  1:2107722/1‑35
   TTACTGGCATACGGATCAACAGGATCGGCTAAAAA               >  1:15835781/1‑35
    TACTGGCATACGGATCAACAGGATCGGCTAAAAAA              >  1:1453564/1‑35
    TACTGGCATACGGATCAACAGGATCGGCTAAAAAA              >  1:15299535/1‑35
    TACTGGCATACGGATCAACAGGATCGGCTAAAAAA              >  1:12973355/1‑35
    TACTGGCATACGGATCAACAGGATCGGCTAAAAAA              >  1:11388539/1‑35
       TGGCATACGGATCAACAGGATCGGCTAAAAAAAAA           >  1:13856257/1‑35
       TGGCATACGGATCAACAGGATCGGCTAAAAAAAAA           >  1:5364837/1‑35
        GGCATACGGATCAACAGGATCGGCTAAAAAAAAAc          >  1:2443475/1‑34
         GCATACGGATCAACAGGATCGGCTAAAAAAAAAAA         >  1:7870814/1‑35
           ATACGGATCAACAGGATCGGCTAAAAAAAAAAAAA       >  1:18225007/1‑35
           ATACGGATCAACAGGATCGGCTAAAAAAAAAAAAA       >  1:7997157/1‑35
           ATACGGATCAACAGGATCGGCTAAAAAAAAAAAAA       >  1:8332556/1‑35
             ACGGATCAACAGGATCGGCTAAAAAAAAAAAAATA     >  1:8218042/1‑35
              CGGATCAACAGGATCGGCTAAAAAAAAAAAAATAA    >  1:12537491/1‑35
               GGATCAACAGGATCGGCTAAAAAAAAAAAAATAAA   >  1:6154874/1‑35
                GATCAACAGGATCGGCTAAAAAAAAAAAAATAAAA  >  1:3420825/1‑35
                                                   
AACTTACTGGCATACGGATCAACAGGATCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1017911‑1017944
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAACAAAAAATAAAA  <  REL606/3424887‑3424871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.