New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3545201 | 81 (0.790) | 9 (0.120) | 3/36 | NT | 13.7% | coding (847/1575 nt) | nikA | nickel transporter subunit |
? | REL606 | = 4576439 | 53 (0.690) | coding (2/381 nt) | hpaF | 5‑carboxymethyl‑2‑hydroxymuconate delta‑isomerase |
ACCGTGATGCTGGCGCTCAATACCGCCAAAGCCCCCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3545162‑3545201 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccaTGCCGCACTTTATCGTGGAATGTACTGAAAATAT < REL606/4576439‑4576406 ACCGTGATGCTGGCGCTCAATACCGCCAAATCCCC > 1:15053472/1‑35 ACCGTGATGCTGGCGCTCAATACCGCCAAAGCCCC > 1:2863960/1‑35 ACCGTGATGCTGGCGCTCAATACCGCCAAAGCCCC > 1:15947222/1‑35 cctTGATGCTGGCGCTCAATACCGCCAAAGCCCCC > 1:11472520/4‑35 CCGTGATGCTGGCGCTCAATACCGCCAAAGCCCCC > 1:5477196/1‑35 CCGTGATGCTGGCGCTCAATACCGCCAAAGCCCCC > 1:9683241/1‑35 CCGTGATGCTGGCGCTCAATACCGCCAAAGCCCCC > 1:10299052/1‑35 CGTTATGCTGGCGCTCAATACCGCCAAAGCCCCCA > 1:19091061/1‑35 CGTGATGCTGGCGCTCAATACCGCCAAAGCCCCCA > 1:15292447/1‑35 CGTGATGCTGGCGCTCAATACCGCCAAAGCCCCCA > 1:10343012/1‑35 GTGATGCTGGCGCTCAATACCGCCAAAGCCCCCAC > 1:13016357/1‑35 GTGATGCTGGCGCTCAATACCGCCAAAGCCCCCAC > 1:14171996/1‑35 GTGATGCTGGCGCTCAATACCGCCAAAGCCCCCAC > 1:14312759/1‑35 TGATGCTGGCGCTCAATACCGCCAAAGCCCCCACC > 1:699577/1‑35 GATGCTTGCGCTCAATACCGCCAAAGCCCCCACCA > 1:4937923/1‑35 GATGCTGGCGCTCAATACCGCCAAAGCCCCCACCA > 1:1135735/1‑35 cCCGCGAAAGCCCCCACCATGCCGCACTTTATCGT < 1:3593437/34‑1 cCCGCGAAAGCCCCCACCATGCCGCACTTTATCGT < 1:12010927/34‑1 CCGCAAAAGCCCCCACCATGCCGCACTTTATCGTG < 1:3656272/35‑1 tctAAAGCCCCCACCATGCCGCACTTTATCGTGGA < 1:3043947/32‑1 cgtAAGCCCCCACCATGCCGCACTTTATCGTGGAA < 1:16331035/32‑1 gAAAGCCCCCACCATGCCGCACTTTATCGTGGAAT < 1:9051795/34‑1 gAAACCCCCCACCATGCCGCACTTTATCGTGGAAT < 1:3895577/34‑1 AAAGCCCCCACCATGCCGCACTTTATCGTGGAATG < 1:3328647/35‑1 AAGCCCCCACCATGCCGCACTTTATCGTGGAATGT < 1:8621291/35‑1 AGCCCCCACCATGCCGCACTTTATCGTGGAATGTA < 1:10449628/35‑1 AGCCCCCACCATGCCGCACTTTATCGTGGAATGTA < 1:4285340/35‑1 GCCCCCACCATGCCGCACTTTATCGTGGAATGTAC < 1:14907072/35‑1 CCCCCACCATGCCGCACTTTATCGTGGAATGTACT < 1:1987610/35‑1 CCCCCACCATGCCGCACTTTATCGTGGAATGTACT < 1:11029827/35‑1 CCCACCATGCCGCACTTTATCGTGGAATGTACTGA < 1:14883858/35‑1 CCACCATGCCGCACTTTATCGTGGAATGTACTGAA > 1:20373429/1‑35 CCACCATGCCGCACTTTATCGTGGAATGTACTGAA > 1:4676236/1‑35 CCACCATGCCGCACTTTATCGTGGAATGTACTGAA < 1:13715684/35‑1 CCACCATGCCGCACTTTATCGTGGAATGTACTGAA > 1:12818447/1‑35 CCACCATGCCGCACTTTATCGTGGAATGTACTGAA < 1:9752776/35‑1 CACCATGCCGCACTTTATCGTGGAATGTACTTAAA > 1:1615572/1‑35 CACCATGCCGCACTTTATCGTGGAATGTACTGAAA < 1:3882798/35‑1 CACCATGCCGCACTTTATCGTGGAATGTACTGAAA > 1:3438335/1‑35 CACCATGCCGCACTTTATCGTGGAATGTACTGAAA < 1:9002565/35‑1 CACCATGCCGCACTTTATCGTGGAATGTACTGAAA > 1:9999940/1‑35 CACCATGCCGCACTTTATCGTGGAATGTACTGAAA > 1:10130808/1‑35 CACCATGCCGCACTTTATCGTGGAATGTACTGAAA < 1:11731382/35‑1 CACCATGCCGCACTTTATCGTGGAATGTACTGAAA < 1:13356027/35‑1 CACCATGCCGCACTTTATCGTGGAATGTACTGAAA < 1:2272536/35‑1 CACCATGCCGCACTTTATCGTGGAATGTACTGAAA < 1:1896025/35‑1 ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA < 1:11345073/35‑1 ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA > 1:9098347/1‑35 ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA > 1:2069380/1‑35 ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA < 1:7962095/35‑1 ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA > 1:19889601/1‑35 ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA > 1:1365787/1‑35 ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA > 1:15583880/1‑35 ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA > 1:17025022/1‑35 ACCATGCCGCACTTTATCGTGGAATGTACTGAAAA < 1:18737406/35‑1 CCATGCCGCACTTTATCGTGGAATGTACTGAAAAT < 1:4991504/35‑1 CCATGCCGCACTTTATCGTGGAATGTACTGAAAAT > 1:1336618/1‑35 CCATGCCGCACTTTATCGTGGAATGTACTGAAAAT < 1:18732614/35‑1 CCATGCCGCACTTTATCGTGGAATGTACTGAAAAT > 1:10694644/1‑35 CATGCCGCACTTTATCGTGGCATGTACTGAAAATA > 1:14283988/1‑35 CATGCCGCACTTTATCGTGGAATGTACTGAAAATA < 1:15690075/35‑1 CATGCCGCACTTTATCGTGGAATGTACTGAAAATA > 1:11876456/1‑35 CATGCCGCACTTTATCGTGGAATGTACTGAAAATA > 1:3620269/1‑35 ATGCCGCACTTTATCGTGGAATGTACTGAAAATAT < 1:15967651/35‑1 ATGCCGCACTTTATCGTGGAATGTACTGAAAATAT < 1:11443485/35‑1 ACCGTGATGCTGGCGCTCAATACCGCCAAAGCCCCCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3545162‑3545201 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccaTGCCGCACTTTATCGTGGAATGTACTGAAAATAT < REL606/4576439‑4576406 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |