New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 469267 =124 (1.210)5 (0.060) 3/42 NT 4.9% coding (26/645 nt) adk adenylate kinase
?REL606 2766488 = 87 (0.970)coding (154/480 nt) ispF 2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase

ATGATGAACTGAGCCTGAGTCCCTTTCCCCGCGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/469303‑469267
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgCCGCGCCAAGCAATGCATCGGTCAACGCATGGAG  >  REL606/2766488‑2766521
                                                                       
ATGATGAACTGAGCCTGAGTCCCTTTCCCCGCGCC                                      <  1:10320535/35‑1
ATGATGAACTGAGCCTGAGTCCCTTTCCCCGCGCC                                      >  1:5637148/1‑35
ATGATGAACTGAGCCTGAGTCCCTTTCCCCGCGCC                                      <  1:6010172/35‑1
ATGATGAACTGAGCCTGAGTCCCTTTCCCCGCGCC                                      >  1:13134411/1‑35
ATGATGAACTGAGCCTGAGTCCCTTTCCCCGCGCC                                      <  1:14867379/35‑1
ATGATGAACTGAGCCTGAGTCCCTTACCCCGCGCC                                      >  1:4055044/1‑35
 TGATGAACTGAGCCTGAGTCCCTTTCCCCGCGCCC                                     >  1:2806195/1‑35
 TGATGAACTGAGCCTGAGTCCCTTTCCCCGCGCCC                                     >  1:461474/1‑35
 TGATGAACTGAGCCTGAGTCCCTTTCCCCGCGCCC                                     <  1:6830449/35‑1
 TGATGAACTGAGCCTGAGTCCCTTTCCCCGCGCCC                                     >  1:8884441/1‑35
  GATGAACTGAGCCTGAGTCCCTTTCCGCGCGCCCG                                    <  1:7095743/35‑1
  GATGAACTGAGCCTGAGTCCCTTTCCCCGCGCCCG                                    >  1:10732934/1‑35
  GATGAACTGAGCCTGAGTCCCTTTCCCCGCGCCCG                                    <  1:11516420/35‑1
  GATGAACTGAGCCTGAGTCCCTTTCCCCGCGCCCG                                    <  1:15694843/35‑1
  GATGAACTGAGCCTGAGTCCCTTTCCCCGCGCCCG                                    <  1:953593/35‑1
  GATGAACTGAGCCTGAGTCCCTTTCCCCGCGCCCG                                    <  1:12949620/35‑1
  GATGAACTGAGCCTGAGTCCCTTTCCCCGCGCCCG                                    >  1:19913326/1‑35
                          CCCCGCGGCCGCCGCGCCAAGCAATGCATCGGTCA            <  1:19522007/35‑1
                          CCCCGCCCCCGCCGCGCCAAGCAATGCATCGGTCA            <  1:4136257/35‑1
                           CCCGCCCCCGCCGCGCCAAGCAATGCATCGGTCAA           <  1:18273417/35‑1
                           CCCACGCCCGCCGCGCCAAGCAATGCATCGGTCAA           <  1:5838443/35‑1
                            CCGCCCCCGCCGCGCCAAGCAATGCATCGGTCAAC          <  1:8746087/35‑1
                             CGCCCCCGCCGCGCCAAGCAATGCATCGGTCAACG         <  1:2906925/35‑1
                              cgcCCCGCCGCGCCAAGCAATGCATCGGTCAACGC        <  1:2048712/32‑1
                              cccCCCGCCGCGCCAAGCAATGCATCGGTCAACGC        <  1:12606907/32‑1
                              accCCCGCCGCGCCAAGCAATGCATCGGTCAACGC        <  1:15187597/32‑1
                               ccCCCGCCGCGCCAAGCAATGCATCGGTCAACGCA       <  1:17789710/33‑1
                               ccCCCGCCGCGCCAAGCAATGCATCGGTCAACGCA       <  1:12646957/33‑1
                               ccCCCGCCGCGCCAAGCAATGCATCGGTCAACGCA       <  1:13970206/33‑1
                                cCCCGCCGCGCCAAGCAATGCATCGGTCAACGCAT      <  1:2218111/34‑1
                                cCCCGCCGCGCCAAGCAATGCATCGGTCAACGCAT      <  1:15994825/34‑1
                                cCCCGCCGCGCCAAGCAATGCATCGGTCAACGCAT      <  1:16948222/34‑1
                                 CCCGCCGCGCCAAGCAATGCATCGGTCAACGCATG     <  1:8821775/35‑1
                                 CCCGCCGCGCCAAGCAATGCATCGGTCAACGCATG     <  1:7111002/35‑1
                                 CCCGCCGCGCCAAGCAATGCATCGGTCAACGCATG     <  1:2870928/35‑1
                                 CCCGCCGCGCCAAGCAATGCATCGGTCAACGCATG     <  1:19941021/35‑1
                                  caGCCGCGCCAAGCAATGCATCGGTCAACGCATGG    <  1:4369203/33‑1
                                  CCGCCGCGCCAAGCAATGCATCGGTCAATGCATGG    <  1:17383741/35‑1
                                  CCGCCGCGCCAAGCAATGCATCGGTCAACGCATGG    <  1:13047498/35‑1
                                  CCGCCGCGCCAAGCAATGCATCGGTCAACGCATGG    >  1:8453194/1‑35
                                  CCGCCGCGCCAAGCAATGCATCGGTCAACGCATGG    <  1:8159953/35‑1
                                  CCGCCGCGCCAAGCAATGCATCGGTCAACGCATGG    <  1:7111015/35‑1
                                  CCGCCGCGCCAAGCAATGCATCGGTCAACGCATGG    <  1:15857273/35‑1
                                   CGCCGCGCCAAGCAATGCATCGGTCAATGCATGGA   >  1:4548580/1‑35
                                   CGCCGCGCCAAGCAATGCATCGGTCAACGCATGGA   <  1:5759617/35‑1
                                   CGCCGCGCCAAGCAATGCATCGGTCAACGCATGGA   >  1:5206887/1‑35
                                   CGCCGCGCCAAGCAATGCATCGGTCAACGCATGGA   <  1:9607184/35‑1
                                    GCCGCGCCAAGCAATGCATCGGTCAACGTATGGAG  >  1:19935025/1‑35
                                    GCCGCGCCAAGCAATGCATCGGTCAACGCATGGAG  >  1:19985029/1‑35
                                    GCCGCGCCAAGCAATGCATCGGTCAACGCATGGAG  >  1:7652317/1‑35
                                    GCCGCGCCAAGCAATGCATCGGTCAACGCATGGAG  >  1:7739226/1‑35
                                    GCCGCGCCAAGCAATGCATCGGTCAACGCATGGAG  <  1:19845236/35‑1
                                    GCCGCGCCAAGCAATGCATCGGTCAACGCATGGAG  >  1:15135733/1‑35
                                    GCCGCGCCAAGCAATGCATCGGTCAACGCATGGAG  >  1:1375961/1‑35
                                                                       
ATGATGAACTGAGCCTGAGTCCCTTTCCCCGCGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/469303‑469267
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgCCGCGCCAAGCAATGCATCGGTCAACGCATGGAG  >  REL606/2766488‑2766521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.