New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 42237 | 147 (1.430) | 9 (0.100) | 4/42 | NT | 5.9% | pseudogene (740/885 nt) | caiB | crotonobetainyl‑CoA:carnitineCoA‑transferase; b0038_1 |
? | REL606 | 2742547 = | 160 (1.780) | coding (1555/1827 nt) | hycC | NADH dehydrogenase subunit N |
Only 100 of 273 total aligned reads displayed.
GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCGGCATGATGTTCGGCCCTTTGCAGGTGCGACCATC > REL606/42203‑42271 | gcgcCAGATTTGTCCGGGGTTATTTTTGAATTTCG < 1:565815‑M1/35‑1 (MQ=255) gcgcCAGATTTGTCCGGGGTTATTTTTGAATTTCG < 1:16382378‑M1/35‑1 (MQ=255) gcgcCAGATTTGTCCGGGGTTATTTTTGAATTTCG < 1:13058820‑M1/35‑1 (MQ=255) gcgcCAGATTTGTCCGGGGTTATTTTTGAATTTCG < 1:12920108‑M1/35‑1 (MQ=255) cgcCAGATTTGTCCGGGGTTATTTTTGAATTTCgg > 1:505307/1‑35 (MQ=255) cgcCAGATTTGTCCGGGGTTATTTTTGAATTTCgg > 1:13174759/1‑35 (MQ=255) cgcCAGATTTGTCCGGGGTTATTTTTGAATTTCgg < 1:6740718/35‑1 (MQ=255) cgcCAGATTTGTCCGGGGTTATTTTTGAATTTCgg < 1:16929625/35‑1 (MQ=255) cgcCAGATTTGTCCGGGGTTATTTTTGAATTCCgg > 1:19540762/1‑35 (MQ=255) gcCAGATTTGTCCGGGGTTATTTTTGAATTTCGGc > 1:20062436/1‑35 (MQ=255) gcCAGATTTGTCCGGGGTTATTTTTGAATTTCGGc > 1:1749822/1‑35 (MQ=255) gcCAGATTTGTCCGGGGTTATTTTTGAATTTCGGc < 1:4262419/35‑1 (MQ=255) ccAGATTTGTCCGGGGTTATTTTTGAATTTCGGCa > 1:8870573/1‑35 (MQ=255) cAGATTTGTCCGGGGTTATTTTTGAATTTCGGCat < 1:13960525/35‑1 (MQ=255) aGATTTGTCCGGGGTTATTTTTGAATTTAGGCatg < 1:16138341/35‑1 (MQ=255) gATTTGTCCGGGGTTATTTTTGAATTTCGGCatga > 1:7605090/1‑35 (MQ=255) gATTTGTCCGGGGTTATTTTTGAATTTCGGCatga < 1:17626409/35‑1 (MQ=255) gATTTGTCCGGGGTTATTTTTGAATTTCGGCatga < 1:11922562/35‑1 (MQ=255) gATTTGTCCGGGGTTATTTTTAAATTTCGGCatga < 1:19557693/35‑1 (MQ=255) aTTTGTCCGGGGTTATTTTTGAATTTCGGCatgat > 1:1770432/1‑35 (MQ=255) aTTTGTCCGGGGTTATTTTTGAATTTCGGCatgat > 1:2277581/1‑35 (MQ=255) aTTTGTCCGGGGTTATTTTTGAATTTCGGCatgat < 1:4567264/35‑1 (MQ=255) aTTTGTCCGGGGTTATTTTTGAATTTCGGCatgat < 1:15451624/35‑1 (MQ=255) tttGTCCGGGGTTATTTTTGAATTTCGGCatgatg > 1:2573887/1‑35 (MQ=255) tttGTCCGGGGTTATTTTTGAATTTCGGCatgatg > 1:14616477/1‑35 (MQ=255) ttGTCCGGGGTTATTTTTGAATTTCGGCATGATGt < 1:5924963/35‑1 (MQ=255) ttGTCCGGGGTTATTTTTGAATTTCGGCATGATGt > 1:3428938/1‑35 (MQ=255) ttGTCCGGGGTTATTTTTGAATTTCGGCATGATGt > 1:14304308/1‑35 (MQ=255) ttGTCCGGGGTTATTTTTGAATTTCGGCATGATGt > 1:9092239/1‑35 (MQ=255) tGTCCGGGGTTATTTTTGAATTTCGGCATGATGtt < 1:12576570/35‑1 (MQ=255) nnccGNGGTTATTTTTGAATTTCGGCATGATGTTc < 1:18625214/33‑1 (MQ=255) gTCCGGGGTTATTTTTGAATTTCGGCATGATGTTc < 1:13830972/35‑1 (MQ=255) gTCCGGGGTTATTTTTGAATTTCGGCATGATGTTc > 1:11313307/1‑35 (MQ=255) ccGGGGTTATTTTTGAATTTCGGCATGATGTTCgg > 1:17025670/1‑35 (MQ=255) cGGGGTTATTTTTGAATTTCGGCATGATGTTCGGc < 1:10591403/35‑1 (MQ=255) cGGGGTTATTTTTGAATTTCGGCATGATGTTCGGc > 1:16332664/1‑35 (MQ=255) cGGGGTTATTTTTGAATTTCGGCATGATGTTCGGc < 1:11266964/35‑1 (MQ=255) gggTTATTTTTGAATTTCGGCATGATGTTCGGccc < 1:3144568/35‑1 (MQ=255) gggTTATTTTTGAATTTCGGCATGATGTTCGGccc > 1:4826570/1‑35 (MQ=255) gTTATTTTTGAATTTCGGCATGATGTTCGGCCCtt > 1:11109630/1‑35 (MQ=255) gTTATTTTTGAATTTCGGCATGATGTTCGGCCCtt > 1:17375288/1‑35 (MQ=255) gTTATTTTTGAATTTCGGCATGATGTTCGGCCCtt > 1:16896322/1‑35 (MQ=255) gTTATTTTTGAATTTCGGCATGATGTTCGGCCCtt < 1:13116008/35‑1 (MQ=255) gTTATTTTTGAATTTCGGCATGATGTTCGGCCCtt < 1:8678252/35‑1 (MQ=255) gTTATTTTTGAATTTCGGCATGATGTTCGCCCCtt > 1:12399216/1‑35 (MQ=255) ttATTTTTGAATTTCGGCGTGATGTTCGGCCCttt < 1:235938/35‑1 (MQ=255) ttATTTTTGAATTTCGGCATGATGTTCGGCCCttt < 1:18101971/35‑1 (MQ=255) ttATTTTTGAATTTCGGCATGATGTTCGGCCCttt > 1:18446015/1‑35 (MQ=255) tATTTTTGAATTTCGGCATGATGTTCGGCCCTTTg > 1:5759711/1‑35 (MQ=255) tATTTTTGAATTTCGGCATGATGTTCGGCCCTTTg > 1:1003216/1‑35 (MQ=255) aTTTTTGAAGTTCGccataatgatgaatggcagca < 1:3998121‑M1/35‑22 (MQ=255) tttttGAATTTCGGCATGATGTTCGGCCCTTTGCa > 1:3697795/1‑35 (MQ=255) tttttGAATTTCGGCATGATGTTCGGCCCTTTGCa < 1:7036816/35‑1 (MQ=255) ttttGAATTTCGGCATGATGTTCGGCCCTTTGCAg > 1:6052897/1‑35 (MQ=255) ttttAAATTTCGccataatgatgaatggcagcagc < 1:8179819‑M1/35‑24 (MQ=255) tttGAATTTCGGCATGATGTTCGGCCCTTTGCAgg > 1:15266224/1‑35 (MQ=255) tttGAATTTCGGCATGATGTTCGGCCCTTTGCAgg > 1:10871709/1‑35 (MQ=255) tttGAATTTCGGCATGATGTTCGGCCCTTTGCAgg < 1:14827136/35‑1 (MQ=255) ttGAATTTCGGCATGATGTTCGGCCCTTTGCAGGt < 1:179165/35‑1 (MQ=255) ttGAAATTCGccataatgatgaatggcagcagcgg < 1:7247186‑M1/35‑26 (MQ=255) tGAATTTCGGCATGATGTTCGGCCCTTTGCAGGTg > 1:3279117/1‑35 (MQ=255) ggaAATTCGccataatgatgaatggcagcagcggg < 1:12096555‑M1/34‑27 (MQ=255) gAATTTCGGCATGATGTTCGGCCCTTTGCAGGTGc > 1:13286965/1‑35 (MQ=255) gAATTTCGGCATGATGTTCGGCCCTTTGCAGGTGc > 1:9399193/1‑35 (MQ=255) gAATTTCGACATGATGTTCGGCCCTTTGCAGGTGc < 1:4742608/35‑1 (MQ=255) aaTTTCGGCATGATGTTCGGCCCTTTGCAGGTGCg > 1:8356786/1‑35 (MQ=255) aaTTTCGGCATGATGTTCGGCCCTTTGCAGGTGCg < 1:5358719/35‑1 (MQ=255) aaTTTCGGCATGATGTTCGGCCCTTTGCAGGTGCg < 1:6545530/35‑1 (MQ=255) aTTTCGGCATGATGTTCGGCCCTTTGCAGGTGCGa > 1:7767369/1‑35 (MQ=255) aTTTCGGCATGATGTTCGGCCCTTTGCAGGTGCGa > 1:9728028/1‑35 (MQ=255) aTTTCGGCATGATGTTCGGCCCTTTGCAGGTGCGa > 1:10805264/1‑35 (MQ=255) aTTTCAGCACGATGTTCGGCCCTTTGCAGGTGCGa > 1:647635/1‑35 (MQ=37) tttCGccataatgatgaatggcagcagcgggcagg < 1:13313985‑M1/35‑31 (MQ=255) attcGccataatgatgaatggcagcagcgggcagg < 1:20302117‑M1/34‑31 (MQ=255) attcGccataatgatgaatggcagcagcgggcagg < 1:15013642‑M1/34‑31 (MQ=255) ttCGccataatgatgaatggcagcagcgggcaggc < 1:14178318‑M1/35‑32 (MQ=255) ttCGGCATGATGTTCGGCCCTTTGCAGGTGCGAcc > 1:304803/1‑35 (MQ=255) tCGccataatgatgaatggcagcagcgggcaggca > 1:8424072‑M1/1‑3 (MQ=255) tCGccataatgatgaatggcagcagcgggcaggca < 1:2057250‑M1/35‑33 (MQ=255) tCGccataatgatgaatggcagcagcgggcaggca < 1:18809926‑M1/35‑33 (MQ=255) tCGGCATGATGTTCGGCCCTTTGCAGGTGCGAcca > 1:15641556/1‑35 (MQ=255) tCGGCATGATGTTCGGCCCTTTGCAGGTGCGAcca < 1:6948261/35‑1 (MQ=255) cGccataatgatgaatggcaggagcgggcaggcaa < 1:15858294‑M1/35‑34 (MQ=255) cGccataatgatgaatggcagcagcgggcagggca > 1:308626‑M1/1‑2 (MQ=255) cGccataatgatgaatggcagcagcgggcaggcaa < 1:16783929‑M1/35‑34 (MQ=255) cGccataatgatgaatggcagcagcgggcaggcaa > 1:4194704‑M1/1‑2 (MQ=255) cGGCATGATGTTCGGCCCTTTGCAGGTGCGAccat > 1:6686726/1‑35 (MQ=255) cGGCATGATGTTCGGCCCTTTGCAGGTGCGAccat > 1:16639698/1‑35 (MQ=255) cGGCATGATGTTCGGCCCTTTGCAGGTGCGAccat < 1:18168029/35‑1 (MQ=255) cGGCATGATGTTCGGCCCTTTGCAGGTGCGAccat > 1:11400210/1‑35 (MQ=255) ggCATGATGTTCGGCCCTTTGCAGGTGCGAccatc > 1:7951601/1‑35 (MQ=255) ggCATGATGTTCGGCCCTTTGCAGGTGCGAccatc > 1:20589572/1‑35 (MQ=255) ggCATGATGTTCGGCCCTTTGCAGGTGCGAccatc > 1:10323520/1‑35 (MQ=255) gccataatgatgaatggcagcagcgggcagggaat > 1:19025149‑M1/1‑1 (MQ=255) gccataatgatgaatggcagcagcgggcaggcaat > 1:14541621‑M1/1‑1 (MQ=255) gccataatgatgaatggcagcagcgggcaggcaat < 1:12679657‑M1/35‑35 (MQ=255) gccataatgatgaatggcagcagcgggcaggcaat > 1:9026311‑M1/1‑1 (MQ=255) gccataatgatgaatggcagcagcgggcaggcaaa > 1:6314685‑M1/1‑1 (MQ=255) gccataatgatgaatagcagcagcgggcaggcaat < 1:2592241‑M1/35‑35 (MQ=255) gccataatgacgaatggcagcagcgggcaggcaat > 1:5451252‑M1/1‑1 (MQ=255) | GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCGGCATGATGTTCGGCCCTTTGCAGGTGCGACCATC > REL606/42203‑42271 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |