New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 159874160 (0.580)10 (0.100) 3/46 NT 15.9% intergenic (‑61/+28) ydfI/ydfJ predicted mannonate dehydrogenase/predicted transporter
?REL606 = 3347592 48 (0.490)coding (552/918 nt) yhdW predicted amino‑acid transporter subunit

Only 100 of 104 total aligned reads displayed.

AAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAAGAGAAGGGATTAAGGGTTTACAGA  >  REL606/1598707‑1598775
                                  |                                  
aaGCTATATGTTTTGTTATATGAATAAAAATCCCC                                    >  1:20122305‑M1/1‑35 (MQ=255)
aaGCTATATGTTTTGTTATATGAATAAAAATCCCC                                    >  1:19896564‑M1/1‑35 (MQ=255)
aaGCTATATGTTTTGTTATATGAATAAAAATCCCC                                    >  1:9604283‑M1/1‑35 (MQ=255)
aaGCTATATGTTTTGTTATATGAATAAAAATCCCC                                    >  1:14789048‑M1/1‑35 (MQ=255)
 aGCTATATGTTTTGTTATATGAATAAAAATCCCct                                   >  1:5518492/1‑35 (MQ=255)
 aGCTATATGTTTTGTTATATGAATAAAAATCCCct                                   <  1:9447159/35‑1 (MQ=255)
 aGCTATATGTTTTGTTATATGAATAAAAATCCCct                                   <  1:14776464/35‑1 (MQ=255)
  gCTATATGTTTTGTTATATGAATAAAAATCCCctc                                  >  1:10718134/1‑35 (MQ=255)
   cTATATGTTTTGTTATATGAATAAAAATCCCctct                                 <  1:13084719/35‑1 (MQ=255)
   cTATATGTTTTGTTATATGAATAAAAATCCCctct                                 <  1:3631931/35‑1 (MQ=255)
   cTATATGTTTTGTTATATGAATAAAAATCCCctct                                 <  1:14320998/35‑1 (MQ=255)
    tataTGTTTTGTTATATGAATAAAAATCCCCtctc                                >  1:459052/1‑35 (MQ=255)
    tataTGTTTTGTTATATGAATAAAAATCCCCtctc                                >  1:11270887/1‑35 (MQ=255)
    tataTGTTTTGTTATATGAATAAAAATCCCCtctc                                >  1:12234673/1‑35 (MQ=255)
     atatGTTTTGTTATATGAATAAAAATCCCCTCTcc                               >  1:1760404/1‑35 (MQ=255)
      tatGTTTTGTTATATGAATAAAAATCCCCTCTCCg                              <  1:6366001/35‑1 (MQ=255)
       atGTTTTGTTATATGAATAAAAATCCCCTCTCCgg                             >  1:1813173/1‑35 (MQ=255)
       atGTTTTGTTATATGAATAAAAATCCCCTCTCCgg                             <  1:7024881/35‑1 (MQ=255)
       atGTTTTGTTATATGAATAAAAATCCCCTCTCCgg                             >  1:9857176/1‑35 (MQ=255)
        tGTTTTGTTATATGAATAAAAATCCCCTCTCCGGt                            <  1:1571639/35‑1 (MQ=255)
         tttttGTTATATAAATAAAAATCCCCTCTCCGGTa                           <  1:10044402/34‑1 (MQ=255)
         gTTTTGTTATATGAATAAAAATCCCCTCTCCGGTa                           >  1:2383009/1‑35 (MQ=255)
         gTTTTGTTATATAAATAAAAATCCCCTCTCCGGTa                           >  1:5672652/1‑35 (MQ=255)
          ttttGTTATATGAATAAAAATCCCCTCTCCGGTaa                          <  1:1428589/35‑1 (MQ=255)
          ttttGTTATATGAATAAAAATCCCCTCTCCGGTaa                          <  1:19263652/35‑1 (MQ=255)
           tttGTTATATGAATAAAAATCCCCTCTCCGGTAag                         >  1:18333323/1‑35 (MQ=255)
           tttGTTATATGAATAAAAATCCCCTCTCCGGTAag                         >  1:18482036/1‑35 (MQ=255)
           tttGTTATATGAATAAAAATCCCCTCTCCGGTAag                         <  1:19234833/35‑1 (MQ=255)
            ttGTTATATGAATAAAAATCCCCTCTCCGGTAaga                        <  1:3944080/35‑1 (MQ=255)
            ttGTTATATGAATAAAAATCCCCTCTCCGGTAaga                        <  1:16391609/35‑1 (MQ=255)
            ttGTTATATGAATAAAAATCCCCTCTCCGGTAaga                        <  1:19497108/35‑1 (MQ=255)
            ttGTTATATGAATAAAAATCCCCTCTCCGGTAaga                        <  1:20037743/35‑1 (MQ=255)
             tGTTATATGAATAAAAATCCCCTCTCCGGTAagag                       >  1:9722056/1‑35 (MQ=255)
             tGTTATATGAATAAAAATCCCCTCTCCGGTAagag                       >  1:13502484/1‑35 (MQ=255)
              gTTATATGAATAAAAATCCCCTCTCCGGTAAgaga                      >  1:7035708/1‑35 (MQ=255)
              gTTATATGAATAAAAATCCCCTCTCCGGTAAgaga                      >  1:3101252/1‑35 (MQ=255)
              gTTATATGAATAAAAATCCCCTCTCCGGTAAgaga                      >  1:12848069/1‑35 (MQ=255)
               ttATATGAATAAAAATCCCCTCTCCGGTAAGAGaa                     >  1:5735814/1‑35 (MQ=255)
               ttATATGAATAAAAATCCCCTCTCCGGTAAGAGaa                     >  1:16035428/1‑35 (MQ=255)
               ttATATGAATAAAAATCCCCTCTCCGGTAAGAGaa                     >  1:3452559/1‑35 (MQ=255)
                 atatGAATAAAAATCCCCTCTCCGGTAAGAGAAgg                   >  1:3124306/1‑35 (MQ=255)
                 atatGAATAAAAATCCCCTCTCCGGTAAGAGAAgg                   >  1:20515828/1‑35 (MQ=255)
                 atatGAATAAAAATCCCCTCTCCGGTAAGAGAAgg                   <  1:4017739/35‑1 (MQ=255)
                 atatGAATAAAAATCCCCTCTCCGGTAAGAGAAgg                   >  1:12273021/1‑35 (MQ=255)
                 atatGAATAAAAATCCCCTCTCCGGTAAGAGAAgg                   >  1:16253963/1‑35 (MQ=255)
                 atatGAATAAAAATCCCCTCTCCGGTAAGAGAAgg                   <  1:14477369/35‑1 (MQ=255)
                  tatGAATAAAAATCTCCTCTCCGGTAAGAGAAggg                  >  1:8769881/1‑35 (MQ=255)
                  tatGAATAAAAATCCCCTCTCCGGTAAGAGAAggg                  <  1:16343306/35‑1 (MQ=255)
                  tatGAATAAAAATCCCCTCTCCGGTAAGAGAAggg                  >  1:13767003/1‑35 (MQ=255)
                   atGAATAAAAATCCCCTCTCCGGTAAGAGAAGGGa                 >  1:18264258/1‑35 (MQ=255)
                   atGAATAAAAATCCCCTCTCCGGTAAGAGAAGGGa                 >  1:14451834/1‑35 (MQ=255)
                   atGAATAAAAATCCCCTCTCCGGTAAGAGAAGGGa                 >  1:11091057/1‑35 (MQ=255)
                    tGAATAAAAATCCCCTCTCCGGTAAGAGAAGGGAt                <  1:17119843/35‑1 (MQ=255)
                    tGAATAAAAATCCCCTCTCCGGTAAGAGAAGGGAt                >  1:1546712/1‑35 (MQ=255)
                    tGAATAAAAATCCCCTCTCCGGTAAGAGAAGGGAt                <  1:3105904/35‑1 (MQ=255)
                     gAATAAAAATCCCCTCTCCGGTAAGAGAAGGGAtt               >  1:17653224/1‑35 (MQ=255)
                      aaTAAAAATCCCCTCTCCGGTAAGAGAAGGGATTa              >  1:7331767/1‑35 (MQ=255)
                      aaTAAAAATCCCCTCTCCGGTAAGAGAAGGGATTa              >  1:7788322/1‑35 (MQ=255)
                      aaTAAAAATCCCCTCTCCGGTAAGAGAAGGGATTa              <  1:13524094/35‑1 (MQ=255)
                      aaTAAAAATCCCCTCTCAGGTAAGAGAAGGGATTa              <  1:9685728/35‑1 (MQ=255)
                       ttaAAAAACCCCctccggtaagacaatccattcag             <  1:12349030‑M1/34‑24 (MQ=255)
                       ttaAAAAACCCCctccggtaagacaatccattcag             <  1:10202061‑M1/34‑24 (MQ=255)
                       aTAAAAATCCCCTCTCCGGTAAGAGAAGGGATTaa             >  1:2693103/1‑35 (MQ=255)
                       aTAAAAATCCCCTCTCCGGTAAGAGAAGGGATTaa             >  1:1678382/1‑35 (MQ=255)
                        tAAAAATCCCCTCTCCGGTAAGAGAAGGGATTAAg            <  1:15669611/35‑1 (MQ=255)
                        tAAAAAACCCCctccggtaagacaatccattcagc            <  1:15355956‑M1/35‑25 (MQ=255)
                        tAAAAAACCCCctccggtaagacaatccattcagc            <  1:4884487‑M1/35‑25 (MQ=255)
                         aaaaaTCCCCTCTCCGGTAAGAGAAGGGATTAAgg           >  1:7445377/1‑35 (MQ=255)
                         aaaaaTCCCCTCTCCGGTAAGAGAAGGGATTAAgg           >  1:19533758/1‑35 (MQ=255)
                         aaaaaACCCCctccggtaagacaatccattcagct           <  1:9104984‑M1/35‑26 (MQ=255)
                         aaaaaACCCCctccggtaagacaatccattcagct           <  1:16506143‑M1/35‑26 (MQ=255)
                          aaaaTCCCCTCTCCGGTAAGAGAAGGGATTAAggg          >  1:20255334/1‑35 (MQ=255)
                          aaaaTCCCCTCTCCGGTAAGAGAAGGGATTAAggg          >  1:11019764/1‑35 (MQ=255)
                           aaaTCCCCTCTCCGGTAAGAGAAGTGATTAAGGGt         >  1:5047045/1‑35 (MQ=255)
                           aaaTCCCCTCTCCGGTAAGAGAAGGGATTAAGGGt         >  1:5956153/1‑35 (MQ=255)
                           aaaTCCCCTCTCCGGTAAGAGAAGGGATTAAGGGt         <  1:18332814/35‑1 (MQ=255)
                           aaaTCCCCTCTCCGGTAAGAGAAGGGATTAAGGGt         >  1:7834129/1‑35 (MQ=255)
                           aaaACCCCctccggtaagacaatccattcagctgg         <  1:12284684‑M1/35‑28 (MQ=255)
                           aaaACCCCctccggtaagacaatccattcagctgg         <  1:19093200‑M1/35‑28 (MQ=255)
                           aaaACCCCctccggtaagacaatccattcagctgg         <  1:20260919‑M1/35‑28 (MQ=255)
                            aaaccccctccggtaagacaatccattcagctggg        <  1:11520705‑M1/32‑29 (MQ=255)
                            aaTCCCCTCTCCGGTAAGAGAAGGGATTAAGGGtt        <  1:5231130/35‑1 (MQ=255)
                            aaTCCCCTCTCCGGTAAGAGAAGGGATTAAGGGtt        >  1:1155912/1‑35 (MQ=255)
                            aaTCCCCTCTCCGGTAAGAGAAGGGATTAAGGGtt        >  1:15432550/1‑35 (MQ=255)
                            aaTCCCCTCTCCGGTAAGAGAAGGGATTAAGGGtt        <  1:9449630/35‑1 (MQ=255)
                             aaccccctccggtaagacaatccattcagctgggt       <  1:2218762‑M1/33‑30 (MQ=255)
                              tCCCCTCTCCGGTAAGAGAAGGGATTAAGGGTTTa      <  1:10033470/35‑1 (MQ=255)
                              ccaccctccggtaagacaatccattcagctgggtt      <  1:9309469‑M1/32‑31 (MQ=255)
                              accccctccggtaagacaatccattcagctgggtt      <  1:16342880‑M1/34‑31 (MQ=255)
                               ccccctccggtaagacaatccattcagctgggttg     <  1:7998560‑M1/35‑32 (MQ=255)
                               ccccTCTCCGGTAAGAGAAGGGATTAAGGGTTTAc     >  1:693038/1‑35 (MQ=255)
                                cccTCTCCGGTAAGAGAAGGGATTAAGGGTTTACa    >  1:11951787/1‑35 (MQ=255)
                                 ccctccggtaagacaatccattcagctgggttgct   <  1:7496982‑M1/35‑34 (MQ=255)
                                 ccctccggtaagacaatccattcagctgggttgct   <  1:56136‑M1/35‑34 (MQ=255)
                                 ccTCTCCGGTAAGAGAAGGGATTAAGGGTTTACAg   >  1:10449581/1‑35 (MQ=255)
                                  ctctCCGGTAAGAGAAGGGATTAAGGGTTTACAGa  >  1:8363022/1‑35 (MQ=255)
                                  ctctCCGGTAAGAGAAGGGATTAAGGGTTTACAGa  <  1:11460445/35‑1 (MQ=255)
                                  cctccggtaagacaatccattcagctgggttgctt  <  1:19589235‑M1/35‑35 (MQ=255)
                                  cctccggtaagacaatccattcagctgggttgctt  <  1:148485‑M1/35‑35 (MQ=255)
                                  cctccggtaagacaatccattcagctgggttgctt  <  1:9876757‑M1/35‑35 (MQ=255)
                                  |                                  
AAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAAGAGAAGGGATTAAGGGTTTACAGA  >  REL606/1598707‑1598775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.