Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 4,613,019 | +TT :: IS150 (+) | 100% | intergenic (‑16/‑91) | smp ← / → serB | hypothetical protein/3‑phosphoserine phosphatase |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 664686 = | NA (NA) | 139 (1.350) | 45/48 | NT | 100% | intergenic (‑77/‑49) | gltL/insJ‑2 | ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein |
? | REL606 | = 4613019 | 0 (0.000) | intergenic (‑16/‑90) | smp/serB | hypothetical protein/3‑phosphoserine phosphatase | |||||
* | ? | REL606 | = 3894996 | NA (NA) | 114 (1.160) | 38/46 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 4613020 = | 0 (0.000) | intergenic (‑17/‑89) | smp/serB | hypothetical protein/3‑phosphoserine phosphatase |
Only 100 of 155 total aligned reads displayed.
TTTTGTGCGAGCCATCTTCCACCCTTTGAAAATTTGAGACTTAATGTTGCCAGAAGCAATGGATAC > REL606/4612989‑4613054 | ttttGTGCGAGCCATCTTCCACCCTTTGAAAAttt > 1:9658674/1‑35 (MQ=255) ttaactgtccaactttttggggtcagtacaATTTg < 1:10318862‑M2/5‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaATTTg < 1:20409816‑M2/5‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaATTTg > 1:15730490‑M2/31‑35 (MQ=255) ttaactgtccaactttttggggtcagtacaATTTg > 1:15514990‑M2/31‑35 (MQ=255) taactgtccaactttttggtgtcagtacaATTTga > 1:5461893‑M2/30‑35 (MQ=255) taactgtccaactttttggggtcagtacaATTTga > 1:3658162‑M2/30‑35 (MQ=255) taactgtccaactttttggggtcagtacaATTTga > 1:3195388‑M2/30‑35 (MQ=255) taactgtccaactttttggggtcagtacaATTTga < 1:2624284‑M2/6‑1 (MQ=255) aactgtccaactttttggggtcagtacaATTTgag > 1:5918453‑M2/29‑35 (MQ=255) actgtccaactttttggggtcagtacaATTTgaga > 1:4721638‑M2/28‑35 (MQ=255) tgtccaactttttggggtcagtacaATTTGAGACt > 1:9535572‑M2/26‑35 (MQ=255) tgtccaactttttggggtcagtacaATTTGAGACt > 1:4789817‑M2/26‑35 (MQ=255) tgtccaactttttggggtcagtacaATTTGAGACt < 1:19183500‑M2/10‑1 (MQ=255) tgtccaactttttggggtcagtacaATTTGAGACt > 1:18914345‑M2/26‑35 (MQ=255) gtccaactttttggggtcagtacaATTTGAGACtt > 1:16163045‑M2/25‑35 (MQ=255) gtccaactttttggggtcagtacaATTTGAGACtt > 1:19882848‑M2/25‑35 (MQ=255) tccaactttttggggtcagtacaATTTGAGACTTa > 1:16619529‑M2/24‑35 (MQ=255) tccaactttttggggtcagtacaATTTGAGACTTa > 1:13985036‑M2/24‑35 (MQ=255) ccaactttttggggtcagtacaATTTGAGACTTaa < 1:11340229‑M2/13‑1 (MQ=255) ccaactttttggggtcagtacaATTTGAGACTTaa > 1:3393738‑M2/23‑35 (MQ=255) caactttttggggtcagtacaATTTGAGACTTAAt < 1:3018392‑M2/14‑1 (MQ=255) caactttttggggtcagtacaATTTGAGACTTAAt < 1:19312493‑M2/14‑1 (MQ=255) caactttttggggtcagtacaATTTGAGACTTAAt < 1:14706938‑M2/14‑1 (MQ=255) caactttttggggtcagtacaATTTGAGACTTAAt < 1:20542024‑M2/14‑1 (MQ=255) aactttttggggtcagtacaATTTGAGACTTAATg < 1:17747669‑M2/15‑1 (MQ=255) aactttttggggtcagtacaATTTGAGACTTAATg < 1:11857102‑M2/15‑1 (MQ=255) aactttttggggtcagtacaATTTGAGACTTAATg > 1:12285274‑M2/21‑35 (MQ=255) aactttttggggtcagtacaATTTGAGACTTAATg < 1:5694321‑M2/15‑1 (MQ=255) acttttttgggtcagtacaATTTGAGACTTAATGt > 1:13565287‑M2/20‑35 (MQ=255) actttttggggtcagtacaATTTGAGACTTAATGt > 1:7390840‑M2/20‑35 (MQ=255) ctttttggggtcagtacaATTTGAGACTTAATGtt < 1:2520080‑M2/17‑1 (MQ=255) tttttggggtcagtacaATTTGAGACTTAATGTTg < 1:19462152‑M2/18‑1 (MQ=255) tttttggggtcagtacaATTTGAGACTTAATGTTg > 1:11473915‑M2/18‑35 (MQ=255) tttttggggtcagtacaATTTGAGACTTAATGTTg > 1:172011‑M2/18‑35 (MQ=255) ttttggggtcagtacaATTTGAGACTTAATGTTGc > 1:19355150‑M2/17‑35 (MQ=255) ttttggggtcagtacaATTTGAGACTTAATGTTGc > 1:3980817‑M2/17‑35 (MQ=255) ttttggggtcagtacaATTTGAGACTTAATGTTGc > 1:18733452‑M2/17‑35 (MQ=255) ttttggggtcagtacaATTTGAGACTTAATGTTGc > 1:12442020‑M2/17‑35 (MQ=255) tttggggtcagtacaATTTGAGACTTAATGTTGcc < 1:10536693‑M2/20‑1 (MQ=255) ttggggtcagtacaATTTGAGACTTAATGTTGCCa < 1:1735635‑M2/21‑1 (MQ=255) ttggggtcagtacaATTTGAGACTTAATGTTGCCa < 1:11430297‑M2/21‑1 (MQ=255) ttggggtcagtacaATTTGAGACTTAATGTTGCCa > 1:12209106‑M2/15‑35 (MQ=255) tggggtcagtacaATTTTAGACTTAATGTTGCCAg > 1:15914631‑M2/14‑35 (MQ=255) tggggtcagtacaATTTGAGACTTAATGTTGCCAg > 1:737344‑M2/14‑35 (MQ=255) tggggtcagtacaATTTGAGACTTAATGTTGCCAg > 1:20490649‑M2/14‑35 (MQ=255) tggggtcagtacaATTTGAGACTTAATGTTGCCAg < 1:4687073‑M2/22‑1 (MQ=255) tggggtcagtacaATTTGAGACTTAATGTTGCCAg < 1:8381496‑M2/22‑1 (MQ=255) tggggtcagtacaATTTGAGACTTAATGTTGCCAg < 1:19455400‑M2/22‑1 (MQ=255) tggggtcagtacaATTTGAGACTTAATGTTGCCAg < 1:18336024‑M2/22‑1 (MQ=255) tggggtcagtacaATTTGAGACTTAATGTTGCCAg > 1:18154547‑M2/14‑35 (MQ=255) ggggtcagtacaATTTGAGACTTAATGTTGCCAGa > 1:12466399‑M2/13‑35 (MQ=255) ggggtcagtacaATTTGAGACTTAATGTTGCCAGa > 1:9546254‑M2/13‑35 (MQ=255) ggggtcagtacaATTTGAGACTTAATGTTGCCAGa > 1:4767571‑M2/13‑35 (MQ=255) gggtcagtacaATTTGAGACTTAATGTTGCCAGaa > 1:17673389‑M2/12‑35 (MQ=255) gggtcagtacaATTTGAGACTTAATGTTGCCAGaa > 1:6229623‑M2/12‑35 (MQ=255) gggtcagtacaATTTGAGACTTAATGTTGCCAGaa > 1:7300998‑M2/12‑35 (MQ=255) ggtcagtacaATTTGAGACTTAATGTTGCCAGAAg < 1:15239159‑M2/25‑1 (MQ=255) ggtcagtacaATTTGAGACTTAATGTTGCCAGAAg < 1:18181097‑M2/25‑1 (MQ=255) ggtcagtacaATTTGAGACTTAATGTTGCCAGAAg < 1:8843962‑M2/25‑1 (MQ=255) ntcagtacaATTTGAGACTTAATGTTGCCAGAAGc > 1:20113342‑M2/10‑35 (MQ=255) gtcagtacaATTTGAGACTTAATGTTGCCAGAAGc < 1:7243409‑M2/26‑1 (MQ=255) gtcagtacaATTTGAGACTTAATGTTGCCAGAAGc > 1:8229788‑M2/10‑35 (MQ=255) gtcagtacaATTTGAGACTTAATGTTGCCAGAAGc < 1:9202841‑M2/26‑1 (MQ=255) gtcagtacaATTTGAGACTTAATGTTGCCAGAAGc > 1:11355578‑M2/10‑35 (MQ=255) gtcagtacaATTTGAGACTTAATGTTGCCAGAAGc > 1:12041675‑M2/10‑35 (MQ=255) tcagtacaATTTGAGACTTAGTGTTGCCAGAAGCa < 1:19754345‑M2/27‑1 (MQ=255) cagtacaATTTGAGACTTAATGTTGCCAGAATCaa > 1:10272897‑M2/8‑35 (MQ=255) cagtacaATTTGAGACTTAATGTTGCCAGAAGCaa > 1:10891733‑M2/8‑35 (MQ=255) cagtacaATTTGAGACTTAATGTTGCCAGAAGCaa > 1:13287058‑M2/8‑35 (MQ=255) cagtacaATTTGAGACTTAATGTTGCCAGAAGCaa > 1:14522002‑M2/8‑35 (MQ=255) cagtacaATTTGAGACTTAATGTTGCCAGAAGCaa > 1:20309032‑M2/8‑35 (MQ=255) cagtacaATTTGAGACTTAATGTTGCCAGAAGCaa > 1:20152168‑M2/8‑35 (MQ=255) cagtacaATTTGAGACTTAATGTTGCCAGAAGCaa < 1:18029726‑M2/28‑1 (MQ=255) cagtacaATTTGAGACTTAATGTTGCCAGAAGCaa < 1:18028091‑M2/28‑1 (MQ=255) cagtacaATTTGAGAATTAATGTTGCCAGAAGCaa > 1:5382088‑M2/8‑35 (MQ=255) agtacaATTTGAGACTTAATGTTGCCAGAAGCAAt < 1:14256386‑M2/29‑1 (MQ=255) agtacaATTTGAGACTTAATGTTGCCAGAAGCAAt > 1:19739982‑M2/7‑35 (MQ=255) agtacaATTTGAGACTTAATGTTGCCAGAAGCAAt > 1:8568626‑M2/7‑35 (MQ=255) agtacaATTTGAGACTTAATGTTGCCAGAAGCAAt > 1:6821326‑M2/7‑35 (MQ=255) agtacaATTTGAGACTTAATGTTGCCAGAAGCAAt > 1:6079688‑M2/7‑35 (MQ=255) gtacaATTTGAGACTTAATGTTGCCAGAAGCAATg > 1:14715167‑M2/6‑35 (MQ=255) gtacaATTTGAGACTTAATGTTGCCAGAAGCAATg > 1:8352647‑M2/6‑35 (MQ=255) tacaATTTGAGACTTAATGTTGCCAGAAGCAATgg > 1:18461003‑M2/5‑35 (MQ=255) tacaATTTGAGACTTAATGTTGCCAGAAGCAATgg > 1:13387911‑M2/5‑35 (MQ=255) tacaATTTGAGACTTAATGTTGCCAGAAGCAATgg < 1:11793446‑M2/31‑1 (MQ=255) acaATTTGAGACTTAATGTTGCCAGAAGCAATGGa < 1:18751020‑M2/32‑1 (MQ=255) acaATTTGAGACTTAATGTTGCCAGAAGCAATGGa > 1:10409626‑M2/4‑35 (MQ=255) acaATTTGAGACTTAATGTTGCCAGAAGCAATGGa > 1:8691997‑M2/4‑35 (MQ=255) acaATTTGAGACTTAATGTTGCCAGAAGCAATGGa < 1:1525799‑M2/32‑1 (MQ=255) acaATTTGAGACTTAATGTTGCAAGAAGCAATGGa < 1:3954488‑M2/32‑1 (MQ=255) caATTTGAGACTTAATGTTGCCAGAAGCAATGGAt < 1:19111774‑M2/33‑1 (MQ=255) caATTTGAGACTTAATGTTGCCAGAAGCAATGGAt > 1:6007948‑M2/3‑35 (MQ=255) aATTTGAGACTTAATGTTGCCAGAAGCAATGGATa > 1:2588737‑M2/2‑35 (MQ=255) aATTTGAGACTTAATGTTGCCAGAAGCAATGGATa > 1:17221339‑M2/2‑35 (MQ=255) aATTTGAGACTTAATGTTGCCAGAAGCAATGGATa < 1:10149541‑M2/34‑1 (MQ=255) aTTTGAGACTTAATGTTGCCAGAAGCAATGGATAc > 1:15274607/1‑35 (MQ=255) aTTTGAGACTTAATGTTGCCAGAAGCAATGGATAc > 1:16597953/1‑35 (MQ=255) aTTTGAGACTTAATGTTGCCAGAAGCAATGGATAc < 1:12995944/35‑1 (MQ=255) aTTTGAGACTTAATGTTGCCAGAAGCAATGGATAc > 1:6412143/1‑35 (MQ=255) | TTTTGTGCGAGCCATCTTCCACCCTTTGAAAATTTGAGACTTAATGTTGCCAGAAGCAATGGATAC > REL606/4612989‑4613054 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |