New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3944627 =101 (0.980)9 (0.120) 3/34 NT 13.8% intergenic (+16/‑131) proM/aslB tRNA‑Pro/predicted regulator of arylsulfatase activity
?REL606 = 4275759 41 (0.560)coding (189/690 nt) yjcO hypothetical protein

TGACGAAATGCACAGAAAACAAAAAACCCCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3944661‑3944627
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccgaCAGCGGTGATGCTGATGCCTGCGCGCTGCTGGCG  <  REL606/4275759‑4275726
                                                                     
TGACGAAATGCACAGAAAACAAAAAACCCCGCCGA                                    >  1:15503019/1‑35
TGACGAAATGCACAGAAAACAAAAAACCCCGCCGA                                    >  1:16792549/1‑35
TGACGAAATGCACAGAAAACAAAAAACCCCGCCGA                                    >  1:9221483/1‑35
                 gcaAAAAAACCCCGCCGACAGCGGTGATGCTGATG                   <  1:11548488/32‑1
                    acAAAACCCCGCCGACAGCGGTGATGCTGATGCCT                <  1:13747123/33‑1
                    AAAAAACCCCGCCGACAGCGGTGATGCTGATGCCT                <  1:6409818/35‑1
                    AAAAAACCCCGCCGACAGCGGTGATGCTGATGCCT                <  1:12885840/35‑1
                     AAAAACCCCGCCGACAGCGGTGATGCTGATGCCTG               <  1:7977200/35‑1
                      agAACCCCGCCGACAGCGGTGATGCTGATGCCTGC              <  1:13309727/33‑1
                      agAACCCCGCCGACAGCGGTGATGCTGATGCCTGC              <  1:19076445/33‑1
                      AAAACCCCGCCGACAGCGGTGATGCTGATGCCTGC              <  1:12238301/35‑1
                      AAAACCCCGCCGACAGCGGTGATGCTGATGCCTGC              <  1:13050930/35‑1
                      AAAACCCCGCCGACAGCGGTGATGCTGATGCCTGC              <  1:11225983/35‑1
                      AAAAACCCGCCGACAGCGGTGATGCTGATGCCTGC              <  1:17758606/35‑1
                       gAACCCCGCCGACAGCGGTGATGCTGATGCCTGCG             <  1:7552102/34‑1
                        AACGCCGCCGACAGCGGTGATGCTGATGCCTGCGC            <  1:3528345/35‑1
                        AACGCCGCCGACAGCGGTGATGCTGATGCCTGCGC            <  1:1406240/35‑1
                         ACCCCGCCGACAGCGGTGATGCTGATGCCTGCGCG           <  1:613562/35‑1
                         ACCCCGCCGACAGCGGTGATGCTGATGCCTGCGCG           <  1:19733139/35‑1
                          gCCCGCCGACAGCGGTGATGCTGATGCCTGCGCGC          <  1:19750599/34‑1
                           CCCGCCGACAGCGGTGATGCTGATGCCTGCGCGCT         <  1:10252237/35‑1
                            CCGCCGACAGCGGTGATGCTGATGCCTGCGCGCTG        <  1:2941059/35‑1
                            CCGCCGACAGCGGTGATGCTGATGCCTGCGCGCTG        <  1:18247608/35‑1
                            CCGCCGACAGCGGTGATGCTGATGCCTGCGCGCTG        <  1:9137551/35‑1
                            CCGCCGACAGCGGTGATGCTGATGCCTGCGCGCTG        >  1:10085108/1‑35
                             CGCCGACAGCGGTGATGCTGATGCCTGCGCGCTGC       >  1:18368063/1‑35
                             CGCCGACAGCGGTGATGCTGATGCCTGCGCGCTGC       <  1:12080591/35‑1
                             CGCCGACAGCGGTGATGCTGATGCCTGCGCGCTGC       <  1:971162/35‑1
                             CGCCGACAGCGGTGATGCTGATGCATGCGCGCTGC       <  1:8316812/35‑1
                              GCCGACAGCGGTGATGCTGATGCCTGCGCGCTGCT      >  1:987633/1‑35
                              GCCGACAGCGGTGATGCTGATGCCTGCGCGCTGCT      >  1:2839373/1‑35
                              GCCGACAGCGGTGATGCTGATGCCTGCGCGCTGCT      >  1:11367743/1‑35
                              GCCGACAGCGGTGATGCTGATGCCTGCGCGCTGCT      >  1:13538694/1‑35
                              GCCGACAGCGGTGATGCTGATGCCTGCGCGCTGCT      <  1:16218538/35‑1
                              GCCGACAGCGGTGATGCTGATGCCTGCGCGCTGCT      <  1:19397260/35‑1
                               CCGACAGCTGTGATGCTGATGCCTGCGCGCTGCTG     <  1:11470032/35‑1
                               CCGACAGCGGTGATGCTGATGCCTGCGCGCTGgcg     >  1:6548834/1‑32
                               CCGACAGCGGTGATGCTGATGCCTGCGCGCTGCTG     <  1:10150317/35‑1
                               CCGACAGCGGTGATGCTGATGCCTGCGCGCTGCTG     <  1:16654756/35‑1
                               CCGACAGCGGTGATGCTGATGCCTGCGCGCTGCTG     <  1:19584126/35‑1
                               CCGACAGCGGTGATGCTGATGCCTGCGCGCTGCTG     <  1:4977977/35‑1
                                CGACAGCGGTGATGCTGATGCCTGCGCGCTGCTGG    >  1:6007488/1‑35
                                CGACAGCGGTGATGCTGATGCCTGCGCGCTGCTGG    <  1:13094306/35‑1
                                 GACAGCGGTGATGCTGATGCCTGCGCGCTGCTGGC   <  1:5503254/35‑1
                                 GACAGCGGTGATGCTGATGCCTGCGCGCTGCTGGC   <  1:9203497/35‑1
                                 GACAGCGGTGATGCTGATGCCTGCGCGCTGCTGGC   <  1:4822544/35‑1
                                 GACAGCGGTGATGCTGATGCCTGCGCGCTGCTGGC   <  1:3742075/35‑1
                                 GACAGCGGTGATGCTGATGCCTGCGCGCTGCTGGC   <  1:3578181/35‑1
                                  ACAGCGGTGATGCTGATGCCTGCGCGCTGCTGGCG  <  1:7913655/35‑1
                                  ACAGCGGTGATGCTGATGCCTGCGCGCTGCTGGCG  <  1:8115334/35‑1
                                                                     
TGACGAAATGCACAGAAAACAAAAAACCCCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3944661‑3944627
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccgaCAGCGGTGATGCTGATGCCTGCGCGCTGCTGGCG  <  REL606/4275759‑4275726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.