New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 10617 =104 (1.010)21 (0.220) 7/44 NT 21.3% intergenic (‑125/+24) yaaH/yaaW conserved inner membrane protein associated with acetate transport/hypothetical protein
?REL606 = 3622975 60 (0.640)coding (1754/2619 nt) yhjO cellulose synthase, catalytic subunit

Only 100 of 189 total aligned reads displayed.

TGGGGCAGTGTCTACGATCTTTTGAGGGGAAAATGAAAATTTTCCCCGGTTTACGGTGTCAGACCTGAG  >  REL606/10583‑10651
                                  |                                  
tGGGTCAGTGTCTACGATCTTTTGAGGGgaaaatg                                    >  1:10145972/1‑35 (MQ=255)
tGGGGCAGTGTCTACGATCTTTTGAGGGgaaaatg                                    <  1:16649807/35‑1 (MQ=255)
tGGGGCAGTGTCTACGATCTTTTGAGGGgaaaatg                                    <  1:4314094/35‑1 (MQ=255)
accgtttcgtagatttcactccagaaagagtggcg                                    <  1:1686012‑M1/1‑1 (MQ=255)
accgtttcgtagatttcactccagaaagagtggcg                                    >  1:7192534‑M1/35‑35 (MQ=255)
accgtttcgtagatttcactccagaaagagtggcg                                    >  1:13306068‑M1/35‑35 (MQ=255)
 ggggCAGTGTCTACGATCTTTTGAGGGgaaaatga                                   <  1:16402407/35‑1 (MQ=255)
 ggggCAGTGTCTACGATCTTTTGAGGGgaaaatga                                   <  1:19624211/35‑1 (MQ=255)
 ggggCAGTGTCTACGATCTTTTGAGGGgaaaaaga                                   >  1:957332/1‑35 (MQ=255)
 ccgtttcgtagatttcactccagaaagagtggcGa                                   <  1:12105496‑M1/2‑1 (MQ=255)
 ccgtttcgtagatttcactccagaaagagtggcGa                                   <  1:6662738‑M1/2‑1 (MQ=255)
 ccgtttagtagatttcactccagaaagagtggcGa                                   >  1:11028726‑M1/34‑35 (MQ=255)
  gggCAGTGTCTACGATCTTTTGAGGGgaaaatgaa                                  >  1:17281119/1‑35 (MQ=255)
  cgtttcgtagatttcactccagaaagagtggcGaa                                  <  1:6391249‑M1/3‑1 (MQ=255)
   gtttcgtagatttcactccagaaagagtggcGaaa                                 <  1:5891703‑M1/4‑1 (MQ=255)
   gtttcgtagatttcactccagaaagagtggcGaaa                                 <  1:8978910‑M1/4‑1 (MQ=255)
   gtttcgtagatttcactccagaaagagtggcGaaa                                 <  1:9783298‑M1/4‑1 (MQ=255)
   ggCAGTGTCTACGATCTTTTGAGGGgaaaaagaaa                                 >  1:16714706/1‑35 (MQ=255)
    tttcgtagatttcactccagaaagagtggcgaaat                                <  1:20338110‑M1/5‑2 (MQ=255)
    tttcgtagatttcactccagaaagagtggcGaaaa                                <  1:3471007‑M1/5‑1 (MQ=255)
    tttcgtagatttcactccagaaagagtggcGaaaa                                <  1:2189055‑M1/5‑1 (MQ=255)
     ttcgtagatttcactccagaaagagtggcGAAAAt                               <  1:15147801‑M1/6‑1 (MQ=255)
      tcgtagatttcactccagaaagagtggcgaaattt                              <  1:4602214‑M1/7‑4 (MQ=255)
      tcgtagatttcactccagaaagagtggcGAAAAtt                              <  1:3289514‑M1/7‑1 (MQ=255)
       gtgtCTACGATCTTTTGAGGGGAAAATGAAAAttt                             >  1:1930276/1‑35 (MQ=255)
       gtgtCTACGATCTTTTGAGGGGAAAATGAAAAttt                             <  1:11885002/35‑1 (MQ=255)
       cgtagatttcactccagaaatagtggcGAAAAttt                             <  1:5448265‑M1/8‑1 (MQ=255)
       cgtagatttcactccagaaagagtggcgaaaaatt                             <  1:4953566‑M1/8‑4 (MQ=255)
       cgtagatttcactccagaaagagtggcGAAAatta                             <  1:15618902‑M1/8‑2 (MQ=255)
       cgtagatttcactccagaaagagtggcGAAAAttt                             <  1:942644‑M1/8‑1 (MQ=255)
        tgtCTACGATCTTTTGAGGGGAAAATGAAAAtttt                            >  1:6240498/1‑35 (MQ=255)
        tgtCTACGATCTTTTGAGGGGAAAATGAAAAtttt                            >  1:6812487/1‑35 (MQ=255)
        tgtCTACGATCTTTTGAGGGGAAAATGAAAAtttt                            <  1:19972126/35‑1 (MQ=255)
        tgtCTACGATCTTTTGAGGGGAAAATGAAAAtttt                            >  1:15932100/1‑35 (MQ=255)
        tgtCTACGATCTTTTGAGGGGAAAATGAAAAtttt                            <  1:13924890/35‑1 (MQ=255)
        gtagatttcactccagaaagagtggcGAAAatttc                            <  1:16542000‑M1/9‑2 (MQ=255)
        gtagatttcactccagaaagagtggcGAAATtttt                            <  1:6098567‑M1/9‑1 (MQ=255)
         tagatttcactccagaaagagtggcGAAAATTTTc                           <  1:10903863‑M1/10‑1 (MQ=255)
         gtCTACGATCTTTTGAGGGGAAAATGAAAATTTTc                           <  1:19680265/35‑1 (MQ=255)
         gtCTACGATCTTTTGAGGGGAAAATGAAAATTTTc                           >  1:17659803/1‑35 (MQ=255)
         gtCTACGATCTTTTGAGGGGAAAATGAAAATTTTc                           <  1:6458521/35‑1 (MQ=255)
          tCTACGATCTTTTGAGGGGAAAATGAAAATTTTcc                          >  1:14288741/1‑35 (MQ=255)
          tCTACGATCTTTTGAGGGGAAAATGAAAATTTTcc                          <  1:2563051/35‑1 (MQ=255)
          tCTACGATCTTTTGAGGGGAAAATGAAAATTTTcc                          <  1:13160478/35‑1 (MQ=255)
          tCTACGATCTTTTGAGGGGAAAATGAAAATTTTcc                          <  1:11811230/35‑1 (MQ=255)
          tCTACGATCTTTTGAGGGGAAAATGAAAATTTTcc                          <  1:5207731/35‑1 (MQ=255)
           gatttcactccagaaagagtggcGAAAATTTtcct                         <  1:7390140‑M1/12‑2 (MQ=255)
           gatttcactccagaaagagtggcGAAAATTTtcct                         <  1:10737717‑M1/12‑2 (MQ=255)
            tACGATCTTTTGAGGGGAAAATGAAAATTTTcccc                        >  1:1372774/1‑35 (MQ=255)
            tACGATCTTTTGAGGGGAAAATGAAAATTTTcccc                        <  1:11498381/35‑1 (MQ=255)
            tACGATCTTTTGAGGGGAAAATGAAAATTTTcccc                        >  1:16147943/1‑35 (MQ=255)
            atttcactccagaaagagtggcGAAAATTTtccct                        <  1:5092523‑M1/13‑2 (MQ=255)
            atttcactccagaaagagtggcGAAAAATTtcccg                        <  1:3768284‑M1/13‑2 (MQ=255)
             aCGATCTTTTGAGGGGAAAATGAAAATTTTCCCCg                       >  1:15395417/1‑35 (MQ=255)
              ttcactccagaaagagtggcGAAAATTTTCCTCgg                      <  1:17159400‑M1/15‑1 (MQ=255)
              ttcactccagaaagagtggcGAAAATTTTCCTCgg                      <  1:834858‑M1/15‑1 (MQ=255)
              ttcactccagaaagagtggcGAAAATTTTCCCCgg                      <  1:7508146‑M1/15‑1 (MQ=255)
              cGATCTTTTGAGGGGAAAATGAAAATTTTCCCCgg                      <  1:8211929/35‑1 (MQ=255)
              cGATCTTTTGAGGGGAAAATGAAAATTTTCCCCgg                      <  1:11233517/35‑1 (MQ=255)
              cGATCTTTTGAGGGGAAAATGAAAATTTTCCCCgg                      >  1:3378192/1‑35 (MQ=255)
               gATCTTTTGAGGGGAAAATGAAAATTTTCCCCGGt                     >  1:1497212/1‑35 (MQ=255)
               gATCTTTTGAGGGGAAAATGAAAATTTTCCCCGGt                     >  1:11576418/1‑35 (MQ=255)
                aTCTTTTGAGGGGAAAATGAAAATTTTCCCCGGtt                    <  1:18643705/35‑1 (MQ=255)
                aTCTTTTGAGGGGAAAATGAAAATTTTCCCCGGtt                    >  1:4832923/1‑35 (MQ=255)
                aTCTTTTGAGGGGAAAATGAAAATTTTCCCCGGtt                    <  1:4247355/35‑1 (MQ=255)
                   ttttGAGGGGAAAATGAAAATTTTCCCCGGTTTAc                 >  1:553631/1‑35 (MQ=255)
                   ttttGAGGGGAAAATGAAAATTTTCCCCGGTTTAc                 <  1:10159850/35‑1 (MQ=255)
                   ttttGAGGGGAAAATGAAAATTTTCCCCGGTTTAc                 <  1:1454758/35‑1 (MQ=255)
                    tttGAGGGGAAAATGAAAATTTTCCCCGGTTTACg                >  1:3403455/1‑35 (MQ=255)
                    tttGAGGGGAAAATGAAAATTTTCCCCGGTTTACg                <  1:14438122/35‑1 (MQ=255)
                     ttGAGGGGAAAATGAAAATTTTCCCCGGTTTACgg               <  1:17049500/35‑1 (MQ=255)
                      tGAGGGGAAAATGAAAATTTTCCCCGGTTTACGgt              <  1:7556041/35‑1 (MQ=255)
                      tGAGGGGAAAATGAAAATTTTCCCCGGTTTACGgt              <  1:13406754/35‑1 (MQ=255)
                       gAGGGGAAAATGAAAATTTTCCCCGGTTTACGgtg             <  1:16999081/35‑1 (MQ=255)
                       gAGGGGAAAATGAAAATTTTCCCCGGTTTACGgtg             >  1:1976060/1‑35 (MQ=255)
                       gAGGGGAAAATGAAAATTTTCCCCGGTTTACGgtg             >  1:18090510/1‑35 (MQ=255)
                        aGGGGAAAATGAAAATTTTCCCCGGTTTACGgtgt            >  1:8571733/1‑35 (MQ=255)
                        aGGGGAAAATGAAAATTTTCCCCGGTTTACGgtgt            >  1:15795811/1‑35 (MQ=255)
                         ggggAAAATGAAAATTTTCCCCGGTTTACGGTGTc           >  1:13787707/1‑35 (MQ=255)
                         ggggAAAATGAAAATTTTCCCCGGTTTACGGTGTc           >  1:13832920/1‑35 (MQ=255)
                          gggAAAATGAAAATTTTCCCCGGTTTACGGTGTCa          >  1:275065/1‑35 (MQ=255)
                          gggAAAATGAAAATTTTCCCCGGTTTACGGTGTCa          >  1:2310273/1‑35 (MQ=255)
                          gggAAAATGAAAATTTTCCCCGGTTTACGGTGTCa          <  1:18365059/35‑1 (MQ=255)
                           ggAAAATGAAAATTTTCCCCGGTTTACGGTGTCAg         <  1:7066592/35‑1 (MQ=255)
                            gaaaatgaaaatTTTCCCCGGTTTACGGTGTCAGa        <  1:9920556/35‑1 (MQ=255)
                            gaaaatgaaaatTTTCCCCGGTTTACGGTGTCAGa        >  1:17472408/1‑35 (MQ=255)
                            gaaaatgaaaatTTTCCCCGGTTTACGGTGTCAGa        >  1:15370358/1‑35 (MQ=255)
                             aaaatgaaaatTTTCCCCGGTTTACGGTGTCAGAc       <  1:14686921/35‑1 (MQ=255)
                              aaatgaaaatTTTCCCCGGTTTACGGTGTCAGAcc      >  1:10562974/1‑35 (MQ=255)
                              aaatgaaaatTTTCCCCGGTTTACGGTGTCAGAcc      <  1:1282164/35‑1 (MQ=255)
                              aaatgaaaatTTTCCCCGGTTTACGGTGTCAGAcc      >  1:17038330/1‑35 (MQ=255)
                              aaatgaaaatTTTCCCCGGTTTACGGTGTCAGAcc      >  1:14772127/1‑35 (MQ=255)
                              aaatgaaaatTTTCCCCGGTTTACGGTGTCAGAcc      >  1:16327195/1‑35 (MQ=255)
                               aatgaaaatTTTCCCCGGTTTACGGTGTCAGACCt     >  1:8191070/1‑35 (MQ=255)
                               aatgaaaatTTTCCCCGGTTTACGGTGTCAGACCt     <  1:17557991/35‑1 (MQ=255)
                               aatgaaaatTTTCCCCGGTTTACGGTGTCAGACCt     <  1:1780748/35‑1 (MQ=255)
                                atgaaaatTTTCCCCGGTTTACGGTGTCAGACCTg    >  1:9188416/1‑35 (MQ=255)
                                atgaaaatTTTCCCCGGTTTACGGTGTCAGACCTg    <  1:12853073/35‑1 (MQ=255)
                                  GAAAATTTTCCCCGGTTTACGGTGTCAGACCTGAg  >  1:7118710‑M1/1‑35 (MQ=255)
                                  GAAAATTTTCCCAGGTTTACGGTGTCAGACCTGAg  >  1:5615979‑M1/1‑35 (MQ=255)
                                  |                                  
TGGGGCAGTGTCTACGATCTTTTGAGGGGAAAATGAAAATTTTCCCCGGTTTACGGTGTCAGACCTGAG  >  REL606/10583‑10651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.