New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 866988 = | 115 (1.120) | 7 (0.090) | 4/38 | NT | 9.9% | coding (1206/2097 nt) | yliE | conserved inner membrane protein |
? | REL606 | = 4527146 | 37 (0.450) | coding (1137/2637 nt) | fimD | outer membrane usher protein, type 1 fimbrial synthesis |
TTCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/867026‑866988 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcCGTAATGGAATAACGAGTATGCCCTTCACGTTGC < REL606/4527146‑4527113 TTCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCC > 1:10375155/1‑35 TTCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCC < 1:8430191/35‑1 TCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCC < 1:10678620/35‑1 TCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCC < 1:17674758/35‑1 TCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCC > 1:11376872/1‑35 TCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCC > 1:18313046/1‑35 TCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCC > 1:14040522/1‑35 TCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCC > 1:8732113/1‑35 CAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCT > 1:3480389/1‑35 CAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCT > 1:13015501/1‑35 CAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCT > 1:18878881/1‑35 CAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCT < 1:4792594/35‑1 CAGTTTTTCTGCGTAACTCCAGGAGTTTTCCCCCT < 1:13668757/35‑1 AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTG > 1:16209647/1‑35 AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTG > 1:19210057/1‑35 AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTG > 1:3788049/1‑35 AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTG < 1:11943644/35‑1 AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTG > 1:10837886/1‑35 AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTG > 1:4248945/1‑35 AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCACTG < 1:4065655/35‑1 GTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTGC > 1:13550975/1‑35 GTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTGC > 1:2255973/1‑35 tGCGGTTTCCCCCTGCCGTAATGGAATAACGAGTA < 1:19759969/34‑1 cggTTTCCCCCTGCCGTAATGGAATAACGAGTATG < 1:10834086/32‑1 CGTTTTCCCCCTGCCGTAATGGAATAACGAGTATG < 1:1618834/35‑1 GTTTTCCCCCTGCCGTAATGGAATAACGAGTATGC < 1:4959292/35‑1 TTTTCCCCCTGCCGTAATGGAATAACGAGTATGCC < 1:5496709/35‑1 TTTTCCCCCTGCCGTAATGGAATAACGAGTATGCC < 1:20153165/35‑1 ttcCCCCCTGCCGTAATGGAATAACGAGTATGCCC < 1:18154511/32‑1 taTCCCCCTGCCGTAATGGAATAACGAGTATGCCC < 1:576541/33‑1 TTTCCCCCTGCCGTAATGGAATAACGAGTATGCCC < 1:4672696/35‑1 tttCCCCTGCCGTAATGGAATAACGAGTATGCCCT < 1:19234664/32‑1 cCCCCCTGCCGTAATGGAATAACGAGTATGCCCTT < 1:4844502/34‑1 TCCCCCTGCCGTAATGGAATAACGAGTATGCCCTT < 1:5518317/35‑1 TCCCCCTGCCGTAATGGAATAACGAGTATGCCCTT < 1:2506501/35‑1 TCCCCCTGCCGTAATGGAATAACGAGTATGCCCTT < 1:206927/35‑1 CCCCCTGCCGTAATGGAATAACGAGTATGCCCTTC < 1:245634/35‑1 CCCCTGCCGTAATGGAATAACGAGTATGCCCTTCA < 1:9465678/35‑1 CCCTGCCGTAATGGAATAACGAGTATGCCCTTCAC < 1:20223483/35‑1 CCTGCCGTAATGGAATAACGAGTATGCCCTTCACG < 1:10344590/35‑1 CCTGCCGTAATGGAATAACGAGTATGCCCTTCACG > 1:15976117/1‑35 CCTGCCGTAATGGAATAACGAGTATGCCCTTCACG > 1:4463238/1‑35 CCTGCCGTAATGGAATAACGAGTATGCCCTTCACG > 1:17632237/1‑35 CTGCCGTAATGGAATAACGAGTATGCCCTTCACGT < 1:1679130/35‑1 CTGCCGTAATGGAATAACGAGTATGCCCTTCACGT < 1:16446058/35‑1 CTGCCGTAATGGAATAACGAGTATGCCCTTCACGT < 1:8903094/35‑1 CTGCCGTAATGGAATAACGAGTATGCCCTTCACGT < 1:3430276/35‑1 CTGCCGTAATGGAATAACGAGTATGCCCTTCACGT > 1:5149747/1‑35 CTGCCGTAATGGAATAACGAGTATGCCCTTCACGT > 1:1448704/1‑35 CTGCCGTAATGGAATAACGAGTATGCCATTCACGT < 1:14427023/35‑1 nGCCGNAATGGAATAACGAGTATGCCCTTCACGTT < 1:14466651/34‑1 TGCCGTAATGGAATAACGAGTATGCCCTTCACGTT < 1:2517770/35‑1 TGCCGTAATGGAATAACGAGTATGCCCTTCACGTT > 1:8009087/1‑35 GCCGTAATGGAATAACGAGTATGCCCTTCACGTTG < 1:8392629/35‑1 GCCGTAATGGAATAACGAGTATGCCCTTCACGTTG > 1:7207761/1‑35 GCCGTAATGGAATAACGAGTATGCCCTTCACGTTG > 1:1479734/1‑35 GCCGTAATGGAATAACGAGTATGCCCTTCACGTTG > 1:15411847/1‑35 GCCGTAATGGAATAACGAGTATGCCCTTCACGTTG > 1:17010600/1‑35 CCGTAATGGAATAACGAGTATGCCCTTCACGTTGC > 1:7451188/1‑35 CCGTAATGGAATAACGAGTATGCCCTTCACGTTGC > 1:8252483/1‑35 CCGTAATGGAATAACGAGTATGCCCTTCACGTTGC > 1:15692301/1‑35 CCGTAATGGAATAACGAGTATGCCCTTCACGTTGC > 1:16271018/1‑35 CCGTAATGGAATAACGAGTATGCCCTTCACGTTGC > 1:4685235/1‑35 CCGTAATGGAATAACGAGTATGCCCTTCACGTTGC > 1:16379631/1‑35 TTCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/867026‑866988 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcCGTAATGGAATAACGAGTATGCCCTTCACGTTGC < REL606/4527146‑4527113 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |