New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2064682 = | 77 (0.750) | 9 (0.110) | 3/38 | NT | 10.8% | coding (595/1218 nt) | wcaC | predicted glycosyl transferase |
? | REL606 | = 3433062 | 88 (1.080) | pseudogene (399/621 nt) | yhfS | putative enzyme; b3376_1 |
Only 100 of 205 total aligned reads displayed.
CCGTACAGGCTATTGAAAGCGTCAGCCACATGCTGGCTGGGGGAAATAAACTGACAGCCCAGCGCCAGC > REL606/2064648‑2064716 | gctgaaggaatcgcttcttcaaatttctccagtTg > 1:18460042‑M1/34‑35 (MQ=255) gctgaaggaatcgcttcttcaaatttctccagtTg > 1:20036637‑M1/34‑35 (MQ=255) gctgaaggaatcgcttcttcaaatttctccagtTg < 1:5301391‑M1/2‑1 (MQ=255) gctgaaggaatcgcttcttcaaatttctccagtTg < 1:4274464‑M1/2‑1 (MQ=255) gctgaaggaatcgcttcttcaaatttctccagtTg < 1:12098640‑M1/2‑1 (MQ=255) ccGTACAGGCTATTGAAAGCGTCAGCCACATgctg < 1:20471612/35‑1 (MQ=255) ccGTACAGGCTATTGAAAGCGTCAGCCACATgctg < 1:12200092/35‑1 (MQ=255) ttttgcgcctcttccagcactctggcggcaatcgg > 1:6136413‑M1/34‑35 (MQ=255) ctgaaggaatcgcttcttcaaatttctccagtTgg < 1:1424855‑M1/3‑1 (MQ=255) ctgaaggaatcgcttcttcaaatttctccagtTgg > 1:17170987‑M1/33‑35 (MQ=255) tgaaggaatcgcttcttcaaatttctccagtTGGc < 1:17582593‑M1/4‑1 (MQ=255) tgaaggaatcgcttcttcaaatttctccagtTGGc < 1:2694775‑M1/4‑1 (MQ=255) tgaaggaatcgcttcttcaaatttctccagtTGGc > 1:11788339‑M1/32‑35 (MQ=255) tgaaggaatcgcttcttcaaatttctccagtTGGc < 1:10290308‑M1/4‑1 (MQ=255) tgaaggaatcgcttcttcaaatttctccagtCGGc < 1:14114589‑M1/4‑1 (MQ=255) ttgcgcctcttccagcactctggcggcaatcGGCt < 1:6316506‑M1/4‑1 (MQ=255) ttgcgcctcttccagcactctggcggcaatcGGCt > 1:20265990‑M1/32‑35 (MQ=255) gaaggaatcgcttcttcaaatttctccagtTGGCt < 1:1314631‑M1/5‑1 (MQ=255) gaaggaatcgcttcttcaaatttctccagtTGGCt > 1:8866890‑M1/31‑35 (MQ=255) tgcgcctcttccagcactctggcggcaatcGGCTg > 1:7506968‑M1/31‑35 (MQ=255) aaggaatcgcttcttcaaatttctccagtTGGCTg < 1:13954966‑M1/6‑1 (MQ=255) aaggaatcgcttcttcaaatttctccagtTGGCTg > 1:16208999‑M1/30‑35 (MQ=255) aaggaatcgcttcttcaaatttctccagtTGGCTg < 1:18549264‑M1/6‑1 (MQ=255) aaggaatcgcttcttcaaatttctccagtTGGCTg < 1:19662071‑M1/6‑1 (MQ=255) aaggaatcgcttcttcaaatttctccagtTGGCTg > 1:12866114‑M1/30‑35 (MQ=255) aaggaatcgcttcttcaaatttctccagtTGGCTg < 1:3621379‑M1/6‑1 (MQ=255) aCAGGCTATTGAAAGCGTCAGCCACATgctggctg < 1:4917579/35‑1 (MQ=255) ggaatcgcttcttcaaatttctccagtTGGCTggg < 1:348107‑M1/8‑1 (MQ=255) cgcctcttccagcactctggcggcaatcGGCTggg < 1:9357627‑M1/7‑1 (MQ=255) cgcctcttccagcactctggcggcaatcGGCTggg < 1:14221211‑M1/7‑1 (MQ=255) aGGCTATTGAAAGCGTCAGCCACATGCTGGGTggg > 1:18159379/1‑35 (MQ=255) aGGCTATTGAAAGCGTCAGCCACATGCTGGCTggg < 1:10022048/35‑1 (MQ=255) aGGCTATTGAAAGCGTCAGCCACATGCTGGCTggg < 1:5467806/35‑1 (MQ=255) gcctcttccagcactctggcggcaatcGGctggtt < 1:7886900‑M1/8‑3 (MQ=255) gaatcgcttcttcaaatttctccagtTGGCTgggg < 1:20261244‑M1/9‑1 (MQ=255) gCTATTGAAAGCGTCATCCACATGCTGGCTggggg > 1:15856300/1‑35 (MQ=255) gCTATTGAAAGCGTCAGCCACATGCTGGCTggggg > 1:616159/1‑35 (MQ=255) gCTATTGAAAGCGTCAGCCACATGCTGGCTggggg < 1:211329/35‑1 (MQ=255) gCTATTGAAAGCGTCAGCCACATGCTGGCTggggg > 1:10381999/1‑35 (MQ=255) cctcttccagcactctggcggcaatcGgctggagg < 1:7290745‑M1/9‑4 (MQ=255) aatcgcttcttcaaatttctccagtTGGCTggggg < 1:8125240‑M1/10‑1 (MQ=255) aatcgcttcttcaaatttctccagtTGGCTggggg < 1:17100819‑M1/10‑1 (MQ=255) ctcttccagcactctggcggcaatcGGCTGGTGGa < 1:4494686‑M1/10‑1 (MQ=255) cTATTGAAAGCGTCAGCCACATGCTGGCTgggggg > 1:2372539/1‑34 (MQ=255) cTATTGAAAGCGTCAGCCACATGCTGGCTgggggg > 1:11365857/1‑34 (MQ=255) cTATTGAAAGCGTCAGCCACATGCTGGCTGGGGGa < 1:13028305/35‑1 (MQ=255) atcgcttcttcaaatttctccagtTGGCTGGGGGa < 1:11160266‑M1/11‑1 (MQ=255) atcgcttcttcaaatttctccagtTGGCTGGGGGa < 1:5096676‑M1/11‑1 (MQ=255) tcttccagcactctggcggcaatcGGCTGGGGGaa < 1:15953539‑M1/11‑1 (MQ=255) cgcttcttcaaatttctccagtTGgctgggggcaa < 1:15765436‑M1/13‑4 (MQ=255) aTTGAAAGCGTCAGCCACATGCTGGCTGGGGGgaa > 1:7635898/1‑35 (MQ=255) aTTGAAAGCGTCAGCCACATGCTGGCTGGGGGaaa < 1:1929581/35‑1 (MQ=255) ttccagctctctggcggcaatcGGCTGGGGgaaac < 1:20059548‑M1/13‑2 (MQ=255) ttccagcactctggctgcaatcGGCTGGGGGAAAt < 1:3248176‑M1/13‑1 (MQ=255) ttccagcactctggcggcaatcGGCTGAGGGAAAt < 1:4639022‑M1/13‑1 (MQ=255) ttGAAAGCGTCAGCCACATGCTGGCTGGGGGGAAt > 1:13796291/1‑35 (MQ=255) tccagcactctggcggcaatcGGCTGGGGGAAATa < 1:8336365‑M1/14‑1 (MQ=255) tccagcactctggcggcaatcGGCTGGGGAAAatc < 1:10470975‑M1/14‑2 (MQ=255) ggAAAGCGTCAGCCACATGCTGGCTGGGGGAAATa < 1:20344643/34‑1 (MQ=255) ttcttcaaatttctccagtTGGCTGGGGGAaattt < 1:16480663‑M1/16‑3 (MQ=255) gAAAGCGTCAGCCACATGCTGGCTGGGGGGAATaa > 1:13727220/1‑35 (MQ=255) gAAAGCGTCAGCCACATGCTGGCTGGGGGGAATaa > 1:5795912/1‑35 (MQ=255) gAAAGCGTCAGCCACATGCTGGCTGGGGGAAATaa < 1:11606714/35‑1 (MQ=255) ccagcactctggcggcaatcGGCTGGGGGAaatcg < 1:7681432‑M1/15‑3 (MQ=255) aaaGCGTCAGCCACATGCTGGCTGGGGGAAATaaa < 1:4724371/35‑1 (MQ=255) aaaGCGTCAGCCACATGCTGGCTGGGGGAAATaaa < 1:19846920/35‑1 (MQ=255) aaGCGTCAGCCACATGCTGGCTGGGGGAAATaaaa > 1:2792201/1‑34 (MQ=255) aaGCGTCAGCCACATGCTGGCTGGGGGAAATAAAc < 1:20123391/35‑1 (MQ=255) aGCGTCAGCCACATGCTGGCTGGGGGAAATAAACt < 1:12922575/35‑1 (MQ=255) aGCGTCAGCCACATGCTGGCTGGGGGAAATAAACt < 1:5688927/35‑1 (MQ=255) gCGTCAGCCACATGCTGGCTGGGGGAAATAAACTg < 1:13703196/35‑1 (MQ=255) gCGTCAGCCACATGCTGGCTGGGGGAAATAAACTg < 1:482363/35‑1 (MQ=255) gCGTCAGCCACATGCTGGCTGGGGGAAATAAACTg < 1:9012350/35‑1 (MQ=255) gCGCCAGCCACATGCTGGCTGGGGGAAATAAACTg < 1:18636109/35‑1 (MQ=255) tgTCAGCCACATGCTGGCTGGGGGAAATAAACTGa < 1:19472719/34‑1 (MQ=255) cctCAGCCACATGCTGGCTGGGGGAAATAAACTGa < 1:5410758/33‑1 (MQ=255) cGTCAGCCACATGCTGGCTGGGGGAAATAAACTGa < 1:11044027/35‑1 (MQ=255) gTCAGCCACATGCTGGCTGGGGGAAATAAACTGAc < 1:8786198/35‑1 (MQ=255) tCAGCCACATGCTGGCTGGGGGAAATAAACTGACa < 1:18419486/35‑1 (MQ=255) ccAGCCACATGCTGGCTGGGGGAAATAAACTGACa < 1:14674660/34‑1 (MQ=255) ccAGCCACATGCTGGCTGGGGGAAATAAACTGACa < 1:10773866/34‑1 (MQ=255) cAGCCACATGCTGGCTGGGGGAAATAAACTGACAg > 1:20377703/1‑35 (MQ=255) gCCACATGCTTGCTGGGGGACATAAACTGACATcc > 1:10163362/1‑35 (MQ=25) gCCACATGCTGGCTGGGGGAAATAAACTGACAGcc > 1:14413667/1‑35 (MQ=255) gCCACATGCTGGCTGGGGGAAATAAACTGACAGcc > 1:19544001/1‑35 (MQ=255) cacaTGCTGGCTGGGGGAAATAAACTGACAGCCCa < 1:10054346/35‑1 (MQ=255) cacaTGCTGGCTGGGGGAAATAAACTGACAGCCCa < 1:15196868/35‑1 (MQ=255) acaTGCTGGCTGGGGGAAATAAACTGACAGCCCAg > 1:15044881/1‑35 (MQ=255) acaTGCTGGCTGGGGGAAATAAACTGACAGCCCAg < 1:19590400/35‑1 (MQ=255) acaTGCTGGCTGGGGGAAATAAACTGACAGCCCAg < 1:11875594/35‑1 (MQ=255) acaTGCTGGCTGGGGGAAATAAACTGACAGCCCAg > 1:2863694/1‑35 (MQ=255) caTGCTGGCTGGGGGAAATAAACTGACAGCCCAgc > 1:12306273/1‑35 (MQ=255) caTGCTGGCTGGGGGAAATAAACTGACAGCCCAgc < 1:4713936/35‑1 (MQ=255) aTGCTGGCGGGGGGAAATAAACTGACAGCCCAgcg < 1:6608766/35‑1 (MQ=255) tGCTGGCTGGGGGAAATAAACTGACAGCCCAgcgc > 1:7850671/1‑35 (MQ=255) tGCTGGCTGGGGGAAATAAACTGACAGCCCAgcgc > 1:15681260/1‑35 (MQ=255) tGCTGGCTGGGGGAAATAAACTGACAGCCCAgcgc < 1:4111240/35‑1 (MQ=255) ctggctggGGGAAATAAACTGACAGCCCAGCGCCa > 1:5934652/1‑35 (MQ=255) TGGCTGGGGGAAATAAACTGACAGCCCAGCGCCAg > 1:13531743‑M1/1‑35 (MQ=255) TGGCTGGGGGAAATAAACTGACAGCCCAGCGCCAg < 1:8726165‑M1/35‑1 (MQ=255) | CCGTACAGGCTATTGAAAGCGTCAGCCACATGCTGGCTGGGGGAAATAAACTGACAGCCCAGCGCCAGC > REL606/2064648‑2064716 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |