New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1534318 = | 71 (0.690) | 12 (0.150) | 4/38 | NT | 24.9% | coding (550/1023 nt) | yddR | D‑ala‑D‑ala transporter subunit |
? | REL606 | = 2036370 | 16 (0.200) | coding (589/1113 nt) | wbbC | putative glycosyltransferase WbbC |
ATGACTGGCTGGATCCACCAACGCACGTTACCGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1534356‑1534318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTTTTCTCGGTGGGTGCTTTGCATGAAGATAAAC < REL606/2036370‑2036337 ATGACTTGCTGGATCCACCAACGCACGTTACCGGC > 1:13178051/1‑35 ATGACTGGCTGGATCCACCAACGCACGTTACCGGC < 1:13661358/35‑1 TGACTGGCTGGATCCACCAACGCACGTTACCGGCT < 1:14694941/35‑1 GACTGGCTGGATCCACCAACGCACGTTACCGGCTT < 1:7125177/35‑1 ACTGGCTGGATCCACCAACGCACGTTACCGGCTTT < 1:2447460/35‑1 ACTGGCTGGATCCACCAACGCACGTTACCGGCTTT < 1:6167533/35‑1 ACTGGCTGGATCCACCAACGCACGTTACCGGCTTT < 1:12462441/35‑1 CTGGCTGGATCCACCAACGCACGTTACCGGCTTTT > 1:14934902/1‑35 CTGGCTGGATCCACCAACGCACGTTACCGGCTTTT < 1:11678990/35‑1 CTGGCTGGATCCACCAACGCACGTTACCGGCTTTT < 1:11124186/35‑1 CTGGCTGGATCCACCAACGCACGTTACCGGCTTTT > 1:10111997/1‑35 TGGCTGGATCCACCAACGCACGTTACCGGCTTTTT > 1:15980558/1‑35 TGGCTGGATCCACCAACGCACGTTACCGGCTTTTT > 1:11059650/1‑35 GGCTGGATCCACCAACGCACGTTACCGGCTTTTTT > 1:8274339/1‑35 GCTGGATCCACCAACGCACGTTACCGGCTTTTTTT > 1:12339290/1‑35 CTGGATCCACCAACGCACGTTACCGGCTTTTTTTT > 1:8961321/1‑35 CTGGATCCACCAACGCACGTTACCGGCTTTTTTTT > 1:9761052/1‑35 CTGGATCCACCAACGCACGTTACCGGCTTTTTTTT > 1:11425654/1‑35 TGGATCCACCAACGCACGTTACCGGCTTTTTTTTT > 1:16322120/1‑35 GGATCCACCAACGCACGTTACCGGCTTTTTTTTTC > 1:18963262/1‑35 GATCCACCAACGCACGTTACCGGCTTTTTTTTTCT > 1:5664242/1‑35 GATCCACCAACGCACGTTACCGGCTTTTTTTTTCT > 1:14162110/1‑35 GATCCACCAACGCACGTTACCGGCTTTTTTCTTCT > 1:18516955/1‑35 ATCCACCAACGCACGTTACCGGCTTTTTTTTTCTt > 1:5416206/1‑34 TCCACCAACGCACGTTACCGGCTTTTTTTTTCTCc > 1:13390894/1‑34 TCCACCAACGCACGTTACCGGCTTTTTTTTTCTCG > 1:8514367/1‑35 CCACCAACGCACGTTACCGGCTTTTTTTTTTTCGc > 1:16611306/1‑34 CACCAACGCACGTTACCGGCTTTTTTTTTTTCGGT > 1:3454113/1‑35 CCAACGCACGTTACCGGCTTTTTTTTTCTTGGTGc > 1:14878415/1‑34 CCAACGCACGTTACCGGCTTTTTTTTTCTCGTTGc > 1:7796676/1‑34 CCAACGCACGTTACCGGCTTTTTTTTTCTCGCTGc > 1:7319422/1‑34 TTTTTTCTCGGTGGGTGCTTTGCATGAAGATAAAC < 1:17396908/35‑1 ATGACTGGCTGGATCCACCAACGCACGTTACCGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1534356‑1534318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTTTTCTCGGTGGGTGCTTTGCATGAAGATAAAC < REL606/2036370‑2036337 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |