New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2880569 =60 (0.580)11 (0.140) 4/36 NT 19.1% coding (101/1230 nt) yqeG predicted transporter
?REL606 3287064 = 48 (0.620)coding (1197/2337 nt) arcB hybrid sensory histidine kinase in two‑component regulatory system with ArcA

Only 100 of 118 total aligned reads displayed.

CGGCGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTA  >  REL606/3287030‑3287098
                                  |                                  
cGGCGTTACTGATGAGGTTCCACAGGATCTGCCGt                                    >  1:15515452/1‑35 (MQ=255)
cGGCGTTACTGATGAGGTTCCACAGGATCTGCCGt                                    >  1:139737/1‑35 (MQ=255)
cGGCGTTACTGATGAGGTTCCACAGGATCTGCCGt                                    >  1:9342621/1‑35 (MQ=255)
cGGCGTTACTGATGAGGTTCCACAGGATCTGCCGt                                    >  1:9155924/1‑35 (MQ=255)
 ggCGTTACTGATGAGGTTCCACAGGATCTGCCGTa                                   >  1:12895629/1‑35 (MQ=255)
  gCGTTACTGATGAGGTTCCACAGGATCTGCCGTaa                                  >  1:16099093/1‑35 (MQ=255)
   cGTTACTGATGAGGTTCCACAGGATCTGCCGTaca                                 >  1:18490216/1‑33 (MQ=255)
   cGTTACTGATGAGGTTCCACAGGATCTGCCGTaaa                                 >  1:8329634/1‑35 (MQ=255)
   cGTTACTGATGAGGTTCCACAGGATCTGCCGCaaa                                 >  1:16301212/1‑35 (MQ=255)
    gTTACTGATGAGGTTCCACAGGATCTGCCGTAAAc                                >  1:6986529/1‑35 (MQ=255)
     ttACTGATGAGGTTCCACAGGATCTGCCGTAAAcg                               >  1:14464875/1‑35 (MQ=255)
     ttACTGATGAGGTTCCACAGGATCTGCCGTAAAcg                               >  1:3875993/1‑35 (MQ=255)
      tACTGATGAGGTTCCACAGGATCTGCCGTAAAcgc                              >  1:6839687/1‑35 (MQ=255)
       aCTGATGAGGTTCCACAGGATCTGCCGTAAAcgcg                             >  1:838879/1‑35 (MQ=255)
       aCTGATGAGGTTCCACAGGATCTGCCGTAAAcgcg                             >  1:5631802/1‑35 (MQ=255)
       aCTGATGAGGTTCCACAGGATCTGCCGTAAAcgcg                             >  1:12822511/1‑35 (MQ=255)
       aCTGATGAGGTTCCACAGGATCTGCCGTAAAcgcg                             >  1:478328/1‑35 (MQ=255)
       aCTGATGAGGTTCCACAGGATCTGCCGTAAAcgcg                             >  1:10830269/1‑35 (MQ=255)
        cTGATGAGGTTCCACAGGATCTGCCGTAAACGCGt                            >  1:15341010/1‑35 (MQ=255)
        cTGATGAGGTTCCACAGGATCTGCCGTAAACGCGt                            >  1:14785122/1‑35 (MQ=255)
        cTGATGAGGTTCCACAGGATCTGCCGTAAACGCGt                            >  1:3284714/1‑35 (MQ=255)
        cTGATGAGGTTCCACAGGATCTGCCGTAAACGCGt                            >  1:4227722/1‑35 (MQ=255)
        cTGATGAGGTTCCACAGGATCTGCCGTAAACGCGt                            >  1:2531850/1‑35 (MQ=255)
        cTGATGAGGTTCCACAGGATCTGCCGTAAACGCGt                            >  1:8613312/1‑35 (MQ=255)
         tgatgaTGTTCCACAGGATCTGCCGTAAACGCGTc                           >  1:3393107/1‑35 (MQ=255)
         tgatgaGGTTCCACAGGATCTGCCGTAAACGCGTc                           >  1:8352974/1‑35 (MQ=255)
         tgatgaGGTTCCACAGGATCTGCCGTAAACGCGTc                           >  1:10589414/1‑35 (MQ=255)
          gatgaGGTTCCACAGGATCTGCCGTAAACGCGTcc                          >  1:10757398/1‑35 (MQ=255)
          gatgaGGTTCCACAGGATCTGCCGTAAACGCGTcc                          >  1:10650372/1‑35 (MQ=255)
          gatgaGGTTCCACAGGATCTGCCGTAAACGCGTcc                          >  1:9758393/1‑35 (MQ=255)
           atgaGGTTCCACAGGATCTGCCGTAAACGCGTccc                         >  1:17251004/1‑35 (MQ=255)
           atgaGGTTCCACAGGATCTGCCGTAAACGCGTccc                         >  1:16668889/1‑35 (MQ=255)
           atgaGGTTCCACAGGATCTGCCGTAAACGCGTccc                         >  1:1101873/1‑35 (MQ=255)
            tgaGGTTCCACAGGATCTGCCGTAAACGCGTCCCg                        >  1:9843386/1‑35 (MQ=255)
            tgaGGTTCCACAGGATCTGCCGTAAACGCGTCCCg                        >  1:2752266/1‑35 (MQ=255)
             gaGGTTCCACAGGATCTGCCGTAAACGCGTCCCGt                       >  1:9191612/1‑35 (MQ=255)
             gaGGTTCCACAGGATCTGCCGTAAACGCGTCCCGt                       >  1:10105219/1‑35 (MQ=255)
              aGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTc                      >  1:12789435/1‑35 (MQ=255)
              aGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTc                      >  1:17221787/1‑35 (MQ=255)
               ggTTCCACAGGATCTGCCGTAAACGCGTCCCGTCg                     >  1:3219712/1‑35 (MQ=255)
               ggTCCCACAGGCCCTGCCGTAAACGCGTCCCGTCg                     <  1:1571834/35‑1 (MQ=25)
                gTTCCACAGGATCTGCCGTAAACGCGTCCCGTCgg                    >  1:4054774/1‑35 (MQ=255)
                gTTCCACAGGATCTGCCGTAAACGCGTCCCGTCgg                    >  1:2799315/1‑35 (MQ=255)
                gTTCCACAGGATCTGCCGTAAACGCGACCCGTTgg                    >  1:18783095/1‑35 (MQ=38)
                 tcccacagcccctgccgTAAACGCGTCCCGTCGGt                   <  1:11471076‑M2/18‑1 (MQ=255)
                 tcccacagcccctgccgTAAACGCGTCCCGTCGGt                   <  1:2308832‑M2/18‑1 (MQ=255)
                 ccccacagcccctgccgTAAACGCGTCCCGTCGGt                   <  1:15978071‑M2/18‑1 (MQ=255)
                  cccacaggccctgccgTAAACGCGTCCCGTCGGTa                  <  1:15580750‑M2/19‑1 (MQ=255)
                   ccccagcccctgccgTAAACGCGTCCCGTCGGTaa                 <  1:12764582‑M2/20‑1 (MQ=255)
                   ccacagcccctgccgTAAACGCGTCCCGTCGGTaa                 <  1:3544434‑M2/20‑1 (MQ=255)
                    cccagcccctgccgTAAACGCGTCCCGTCGGTAAt                <  1:6864622‑M2/21‑1 (MQ=255)
                    cacagcccctgccgTAAACGCGTCCCGTCGGTAAt                <  1:5312267‑M2/21‑1 (MQ=255)
                    cacaTGCTCTGCCGTAAACGCGTCCCGTCGGTAAt                <  1:2307572/35‑1 (MQ=37)
                    cacaGGATCTGCCGTAAACGCGTCCCGTCGGGAAt                >  1:17250765/1‑35 (MQ=255)
                    cacaGGATCTGCCGTAAACGCGTCCCGTCGGGAAt                >  1:17579531/1‑35 (MQ=255)
                    cacaGGATCTGCCGTAAACGCGTCCCGTCGGGAAt                >  1:269389/1‑35 (MQ=255)
                    cacaGGACCTGCCGTAAACGCGTCCCGTCGGTAAt                <  1:2096585/35‑1 (MQ=255)
                     acagcccctgccgTAAACGCGTCCCGTCGGTAATg               <  1:16954208‑M2/22‑1 (MQ=255)
                     acaGGATCTGCCGTAAACGCGTCCCGTCGGTAATg               >  1:1401539/1‑35 (MQ=255)
                     acaGGATCTGCCGTAAACGCGTCCCGTCGGGAATg               >  1:19919397/1‑35 (MQ=255)
                      gggcccctgccgTAAACGCGTCCCGTCGGTAATGa              <  1:18002285‑M2/23‑1 (MQ=255)
                      cggcccctgccgTAAACGCGTCCCGTCGGTAATGa              <  1:1350822‑M2/23‑1 (MQ=255)
                      cagcccctgccgTAAACGCGTCCCGTCGGTAATGa              <  1:12085552‑M2/23‑1 (MQ=255)
                       ggtccctgccgTAAACGCGTCCCGTCGGTAATGAc             <  1:6724584‑M2/24‑1 (MQ=255)
                       agcccctgccgTAAACGCGTCCCGTCGGTAATGAc             <  1:15025485‑M2/24‑1 (MQ=255)
                       aGGATCTGCCGTAAACGCGTCCCGTCGGGAATgtc             >  1:5750243/1‑33 (MQ=37)
                       aGGATCTGCCGTAAACGCGTCCCGTCGGGAATggc             >  1:19542450/1‑33 (MQ=37)
                       aGGATCTGCCGTAAACGCGTCCCGTCGGGAATgcc             >  1:19354065/1‑33 (MQ=37)
                       aGGATCTGCCGTAAACGCGTCCCGTCGGGAATGAc             >  1:4815643/1‑35 (MQ=255)
                       aGGATCTGCCGTAAACGCGTCCCGTCGGGAATGAc             >  1:13320548/1‑35 (MQ=255)
                         gATCTGCCGTAAACGCGTCCCGTCGGCAATGGCCt           >  1:2461663/1‑35 (MQ=37)
                          ccctgccgTAAACGCGTCCCGTCGGTAATGACCTg          <  1:20347724‑M2/27‑1 (MQ=255)
                          ccctgccgTAAACGCGTCCCGTCGGTAATGACCTg          <  1:15579451‑M2/27‑1 (MQ=255)
                          ccctgccgTAAACGCGTCCCGTCGGTAATGACCTg          <  1:2335118‑M2/27‑1 (MQ=255)
                           tCTGCCGTAAACGCGTCCCGTCGGGACTGACCTGa         >  1:11492547/1‑35 (MQ=37)
                           tCTGCCGTAAACGCGTCCCGTCGGGAATGACCtta         >  1:5372909/1‑33 (MQ=37)
                           tCTGCCGTAAACGCGTCCCGTCGGGAATGACCTGa         >  1:1128367/1‑35 (MQ=255)
                           tCTGCCGTAAACGCGTCCCGTCGGGAATGACCTGa         >  1:16866908/1‑35 (MQ=255)
                           cctgccgTAAACGCGTCCCGTCGGTAATGACCTGa         <  1:11398269‑M2/28‑1 (MQ=255)
                           cctgccgTAAACGCGTCCCGTCGGTAATGACCTGa         <  1:18274853‑M2/28‑1 (MQ=255)
                            ctgccgTAAACGCGTCCCGTCGTTAATGACCTGAt        >  1:18477769‑M2/7‑35 (MQ=255)
                            ctgccgTAAACGCGTCCCGTCGGTAATGACCTGAt        <  1:4450937‑M2/29‑1 (MQ=255)
                            ctgccgTAAACGCGTCCCGTCGGTAATGACCTGAt        <  1:11907427‑M2/29‑1 (MQ=255)
                            ctgccgTAAACGCGTCCCGTCGGTAATGACCTGAt        <  1:12452400‑M2/29‑1 (MQ=255)
                            ctgccgTAAACGCGTCCCGTCGGTAATGACCCGAt        >  1:14437258‑M2/7‑35 (MQ=255)
                            ctgccgTAAACGCGTCCCGTCGGGAATGACCTGAt        >  1:4857428‑M2/7‑35 (MQ=255)
                             tgccgTAAACGCGTCCCGTCGGTAATGACCTGATg       <  1:12790138‑M2/30‑1 (MQ=255)
                             tgccgTAAACGCGTCCCGTCGGTAATGACCTGATg       <  1:20391470‑M2/30‑1 (MQ=255)
                             tgccgTAAACGCGTCCCGTCGGGAATGACCTGATg       >  1:6204887‑M2/6‑35 (MQ=255)
                              gCCGTAAACGCGTCCCGTCGGTCATTACCTCATGc      >  1:19292304/1‑35 (MQ=25)
                               ccgTAAACGCGTCCCGTCGGGAATGACCTGATGCg     >  1:12715676‑M2/4‑35 (MQ=255)
                                cgTAAACGCGTCCCGTCGGTAATGACCTGATGCgg    <  1:18605720‑M2/33‑1 (MQ=255)
                                 gTAAACGCGTCCCGTCGGTAATGACCTGATGCGGt   <  1:835696‑M2/34‑1 (MQ=255)
                                 gTAAACGCGTCCCGTCGGTAATGACCTGATGCGGt   <  1:1905398‑M2/34‑1 (MQ=255)
                                 gTAAACGCGTCCCGTCGGTAATGACCTGATGCGGt   >  1:6788530‑M2/2‑35 (MQ=255)
                                 gTAAACGCGTCCCGTCGGTAATGACCTGATGCGGt   <  1:6005754‑M2/34‑1 (MQ=255)
                                 gTAAACGCGTCCCGTCGGTAATGACCTGATGCGGt   <  1:2000805‑M2/34‑1 (MQ=255)
                                 gTAAACGCGTCCCGTCGGGAATGACCTGATGcgg  >  1:8002158‑M2/2‑34 (MQ=255)
                                  tAAACGCGTCCCGTCGGTAATGACCTGATGCGGTa  <  1:14751492/35‑1 (MQ=255)
                                  tAAACGCGTCCCGTCGGGAATGACCTGATGCggga  >  1:17773612/1‑33 (MQ=38)
                                  |                                  
CGGCGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTA  >  REL606/3287030‑3287098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.