New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 185846047 (0.460)4 (0.050) 4/40 NT 6.2% intergenic (+227/+239) insL‑4/yeaS putative transposase insL for insertion sequence IS186/neutral amino‑acid efflux system
?REL606 = 4005717 82 (0.960)intergenic (+18/+265) fre/fadA NAD(P)H‑flavin reductase/acetyl‑CoA acetyltransferase

GTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1858423‑1858460
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggGGCGGGTTTTTTTATATCTCAGATAAATGCAAAC  <  REL606/4005717‑4005684
                                                                        
GTTCCTTTATCAAGATGACGTTCGAATATGCCGGC                                       <  1:7741388/35‑1
GTTCCTTTATCAAGATGACGTTCGAATATGCCGGC                                       >  1:18249430/1‑35
GTTCCTTTATCAAGATGACGTTCGAATATGCCGGC                                       >  1:10828614/1‑35
GTTCCTTTATCAAGATGACGTTCGAATATGCCGGC                                       >  1:16083766/1‑35
GTTCCTTTATCAAGATGACGTTCGAATATGCCGGC                                       >  1:15966280/1‑35
GTTCCTTTATCAAGATGACGTTCGAATATGCCGGC                                       <  1:4015765/35‑1
 TTCCTTTATCAAGATGACGTTCGAATATGCGGGCA                                      <  1:20319499/35‑1
 TTCCTTTATCAAGATGACGTTCGAATATGCCGGCA                                      <  1:1081075/35‑1
 TTCCTTTATCAAGATGACGTTCGAATATGCCGGCA                                      >  1:3973344/1‑35
  TCCTTTATCAAGATGACGTTCGAATATGCCGGGAG                                     >  1:19017604/1‑35
  TCCTTTATCAAGATGACGTTCGAATATGCCGGCAG                                     >  1:18100772/1‑35
  TCCTTTATCAAGATGACGTTCGAATATGCCGGCAG                                     <  1:17574822/35‑1
  TCCTTTATCAAGATGACGTTCGAATATGCCGGCAG                                     <  1:16669203/35‑1
  TCCTTTATCAAGATGACGTTCGAATATGCCGGCAG                                     >  1:20247981/1‑35
  TCCTTTATCAAGATGACGTTCGAATATGCCGGCAG                                     <  1:4887347/35‑1
  TCCTTTATCAAGATGACGTTCGAATATGCCGGCAG                                     >  1:9759183/1‑35
   CCTTTATCAAGATGACGTTCGAATATGCCGGCAGG                                    >  1:3907969/1‑35
   CCTTTATCAAGATGACGTTCGAATATGCCGGCAGG                                    >  1:12714775/1‑35
   CCTTTATCAAGATGACGTTCGAATATGCCGGCAGG                                    >  1:12272256/1‑35
   CCTTTATCAAGATGACGTTCGAATATGCCGGCAGG                                    <  1:5407566/35‑1
    CTTTATCAAGATGACGTTCGAATATGCCGGCAGGG                                   >  1:13105805/1‑35
    CTTTATCAAGATGACGTTCGAATATGCCGGCAGGG                                   >  1:20111443/1‑35
    CTTTATCAAGATGACGTTCGAATATGCCGGCAGGG                                   >  1:11634500/1‑35
    CTTTATCAAGATGACGTTCGAATATGCCGGCAGGG                                   >  1:6065362/1‑35
     TTTATCAAGATGACGTTCGAATATGCCGGCAGGGG                                  >  1:18622510/1‑35
     TTTATCAAGATGACGTTCGAATATGCCGGCAGGGG                                  >  1:10199156/1‑35
       TATCAAGATGACGTTCGAATATGCCGGCAGGGGgg                                >  1:15109733/1‑33
       TATCAAGATGACGTTCGAATATGCCGGCAGGGGgg                                >  1:1807498/1‑33
         TCAAGATGACGTTCGAATATGCCGGCAGGGGGGGG                              >  1:16737928/1‑35
          CAAGATGACGTTCGAATATGCCGGCAGGGGGGGGT                             >  1:16525653/1‑35
               TGACGTTCGAATATGCCGGCAGGGGGGGGTTTTTT                        >  1:6784187/1‑35
                GACGTTCGAATATGCCGGCAGGGGCGGGGTTTTTT                       >  1:3654293/1‑35
                                  CAGGGGCGGGTTTTTTTATATCTCAGATAAATGCA     <  1:10686218/35‑1
                                  CAGGGGCGGGTTTTTTTATATCTCAGATAAATGCA     <  1:19322201/35‑1
                                  CAGGGGCGGGTTTTTTTATATCTCAGATAAATGCA     <  1:19665124/35‑1
                                  CAGGGGCGGGTTTTTTTATATCTCAGATAAATGCA     <  1:707714/35‑1
                                  CAGGGGCGGGTTTTTTTATATCTCAGATAAATGCA     <  1:2842485/35‑1
                                  CAGGGGCGGGGTTTTTTATATCTCAGATAAATGCA     >  1:18181900/1‑35
                                   AGGGGCGGGTTTTTTTATATCTCAGATAAATGCAA    <  1:13930057/35‑1
                                   AGGGGCGGGTTTTTTTATATCTCAGATAAATGCAA    <  1:7857009/35‑1
                                   AGGGGCGGGTTTTTTTATATCTCAGATAAATGCAA    <  1:152013/35‑1
                                   AGGGGCGGGTTTTTTTATATCTCAGATAAATGCAA    <  1:8801755/35‑1
                                   AGGGGCGGGTTTTTTTATATCTCAGATAAATGCAA    <  1:17832562/35‑1
                                   AGGGGCGGGGTTTTTTATATCTCAGATAAATGCAA    >  1:10420658/1‑35
                                    GGGGCGGGTTTTTTTATATCTCAGATAAATGCAAA   <  1:10027135/35‑1
                                    GGGGCGGGTTTTTTTATATCTCAGATAAATGCAAA   <  1:6153528/35‑1
                                    GGGGCGGGTTTTTTTATATCTCAGATAAATGCAAA   <  1:1078738/35‑1
                                     GGGCGGGTTTTTTTATATCTCAGATAAATGCAAAC  <  1:460271/35‑1
                                     GGGCGGGTTTTTTTATATCTCAGATAAATGCAAAC  <  1:14188472/35‑1
                                     GGGCGGGTTTTTTTATATCTCAGATAAATGCAAAC  >  1:377462/1‑35
                                     GGGCGGGTTTTTTTATATCTCAGATAAATGCAAAC  >  1:2663106/1‑35
                                     GGGCGGGTTTTTTTATATCTCAGATAAATGCAAAC  <  1:16859067/35‑1
                                     GGGCGGGTTTTTTTATATCTCAGATAAATGAAAAC  <  1:4677017/35‑1
                                     GGGCGGGTTTTTTTATATCACAGATAAATGCAAAC  <  1:3809844/35‑1
                                     GGGCGGGCTTTTTTATATCTCAGATAAATGCAAAC  >  1:13915176/1‑35
                                     GGGAGGGTTTTTTTATATCTCAGATAAATGCAAAC  <  1:19926013/35‑1
                                                                        
GTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1858423‑1858460
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggGGCGGGTTTTTTTATATCTCAGATAAATGCAAAC  <  REL606/4005717‑4005684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.