New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422590 =83 (0.810)4 (0.040) 4/46 NT 6.1% intergenic (‑277/+185) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter
?REL606 801538 = 45 (0.440)coding (346/1290 nt) bioA adenosylmethionine‑8‑amino‑7‑oxononanoate transaminase

Only 100 of 133 total aligned reads displayed.

TGTTTAACAAATAATTATCATTATGGTGACAATTGGGTGGGGGGGAAAATAAAGACTCATTAGCTGAAT  >  REL606/422556‑422624
                                  |                                  
tGTTTAACAAATAATTATCATTATGGTGACAATtg                                    <  1:10822313/35‑1 (MQ=255)
tGTTTAACAAATAATTATCATTATGGTGACAATtg                                    <  1:11031274/35‑1 (MQ=255)
tGTTTAACAAATAATTATCATTATGGTGACAATtg                                    <  1:13577874/35‑1 (MQ=255)
gcgtttttctcgcggactccggttccgtagcgggg                                    <  1:6223005‑M1/1‑1 (MQ=255)
 gTTTAACAAATAATTATCATTATGGTGACAATtgg                                   <  1:6612780/35‑1 (MQ=255)
 gTTTAACAAATAATTATCATTATGGTGACAATtgg                                   <  1:6567890/35‑1 (MQ=255)
 gTTTAACAAATAATTATCATTATGGTGACAATtgg                                   <  1:868987/35‑1 (MQ=255)
 gTTTAACAAATAATTATCATTATGGTGACAATtgg                                   <  1:14899159/35‑1 (MQ=255)
  tttAACAAATAATTATCATTATGGTGACAATtggg                                  >  1:6863744/1‑35 (MQ=255)
  tttAACAAATAATTATCATTATGGTGACAATtggg                                  >  1:11066790/1‑35 (MQ=255)
  tttAACAAATAATTATCATTATGGTGACAATtggg                                  >  1:3357436/1‑35 (MQ=255)
  gtttttctcgcggactccggttccgtagcgggggg                                  <  1:12184170‑M1/3‑1 (MQ=255)
  gtttttctcgcggactccggttccgtagcgggggg                                  <  1:18608617‑M1/3‑1 (MQ=255)
  gtttttctcgcggactccggttccgtagcgggggg                                  <  1:17464988‑M1/3‑1 (MQ=255)
  gtttttctcgcggactccggttccgtagcggggag                                  <  1:1149238‑M1/3‑3 (MQ=255)
   tttttctcgcggactccggttccgtagcgggggaa                                 <  1:3609099‑M1/4‑3 (MQ=255)
   ttAACAAATAATTATCATTATGGTGACAATtgggt                                 >  1:4934632/1‑35 (MQ=255)
   ttAACAAATAATTATCATTATGGTGACAATtgggt                                 <  1:4758582/35‑1 (MQ=255)
   ttAACAAATAATTATCATTATGGTGACAATtgggt                                 >  1:17703528/1‑35 (MQ=255)
   ttAACAAATAATTATCATTATGGTGACAATtgggt                                 >  1:20241983/1‑35 (MQ=255)
   ttAACAAATAATTATCATTATGGTGACAATtgggt                                 <  1:3308069/35‑1 (MQ=255)
   ttAACAAATAATTATCATTATGGTGACAATtgggt                                 <  1:11168997/35‑1 (MQ=255)
    tAACAAATAATTATCATTATGGTGACAATtgggtg                                <  1:7418824/35‑1 (MQ=255)
     tttctcgcggactccggttccgtagcggggggggg                               <  1:12677019‑M1/6‑4 (MQ=255)
     aaCAAATAATTATCATTATGGTGACAATtgggtgg                               <  1:3915623/35‑1 (MQ=255)
     aaCAAATAATTATCATTATGGTGACAATtgggtgg                               >  1:6895691/1‑35 (MQ=255)
     aaCAAATAATTATCATTATGGTGACAATtgggtgg                               <  1:18497296/35‑1 (MQ=255)
     aaCAAATAATTATCATTATGGTGACAATtgggtgg                               <  1:19011182/35‑1 (MQ=255)
     aaCAAATAATTATCATTATGGTGACAATtgggtgg                               <  1:5857928/35‑1 (MQ=255)
      aCAAATAATTATCATTATGGTGACAATtgggtggg                              <  1:6988081/35‑1 (MQ=255)
      aCAAATAATTATCATTATGGTGACAATtgggtggg                              <  1:11431386/35‑1 (MQ=255)
      aCAAATAATTATCATTATGGTGACAATtgggtggg                              <  1:7789657/35‑1 (MQ=255)
       cAAATAATTATCATTATGGTGACAATTGGGTgggg                             >  1:11118738/1‑35 (MQ=255)
        ctcgcggactccggttccgtagcgggGGGAggggg                            <  1:18478999‑M1/9‑1 (MQ=255)
        aaaTAATTATCATTATGGTGACAATTGGGTggggg                            <  1:3783352/35‑1 (MQ=255)
        aaaTAATTATCATTATGGTGACAATTGGGTggggg                            >  1:2604039/1‑35 (MQ=255)
        aaaTAATTATCATTATGGTGACAATTGGGTggggg                            <  1:12996760/35‑1 (MQ=255)
        aaaTAATTATCATTATGGTGACAATTGGGTggggg                            <  1:11880185/35‑1 (MQ=255)
         aataatTATCATTATGGTGACAATTGGGTgggggg                           <  1:19773981/35‑1 (MQ=255)
         aataatTATCATTATGGTGACAATTGGGTgggggg                           >  1:20087725/1‑35 (MQ=255)
         aataatTATCATTATGGTGACAATTGGGTgggggg                           <  1:5222683/35‑1 (MQ=255)
         aataatTATCATTATGGTGACAATTGGGTgggggg                           <  1:13972358/35‑1 (MQ=255)
         aataatTATCATTATGGTGACAATTGGGTgggggg                           <  1:11527886/35‑1 (MQ=255)
         aataatTATCATTATGGTGACAATTGGGTgggggg                           >  1:9351935/1‑35 (MQ=255)
          ataatTATCATTATGGTGACAATTGGGTggggggg                          <  1:58260/35‑1 (MQ=255)
          ataatTATCATTATGGTGACAATTGGGTggggggg                          <  1:10481985/35‑1 (MQ=255)
            cggactccggttccgtagcgggGGGAGGGGGGGaa                        <  1:9579743‑M1/13‑1 (MQ=255)
            aatTATCATTATGGTGACAATTGGGTGGGGGGGaa                        >  1:13452254/1‑35 (MQ=255)
            aatTATCATTATGGTGACAATTGGGTGGGGGGGaa                        <  1:2985585/35‑1 (MQ=255)
             atTATCATTATGGTGACAATTGGGTGGGGGGGcaa                       >  1:7970107/1‑35 (MQ=255)
             atTATCATTATGGTGACAATTGGGTGGGGGGGaaa                       >  1:17426245/1‑35 (MQ=255)
             atTATCATTATGGTGACAATTGGGTGGGGGGGaaa                       >  1:5196481/1‑35 (MQ=255)
             atTATCATTATGGTGACAATTGGGTGGGGGGGaaa                       >  1:13506983/1‑35 (MQ=255)
             atTATCATTATGGTGACAATTGGGTGGGGGGGaaa                       <  1:18764884/35‑1 (MQ=255)
              ttATCATTATGGTGACAATTGGGTGGGGGGGaaaa                      <  1:7476366/35‑1 (MQ=255)
              ttATCATTATGGTGACAATTGGGTGGGGGGGaaaa                      >  1:19709081/1‑35 (MQ=255)
              ttATCATTATGGTGACAATTGGGTGGGGGGGaaaa                      >  1:18802711/1‑35 (MQ=255)
              ttATCATTATGGTGACAATTGGGTGGGGGGGaaaa                      >  1:11489363/1‑35 (MQ=255)
                aTCATTATGGTGACAATTGGGTGGGGGGGAAAATa                    >  1:11419710/1‑35 (MQ=255)
                 tCATTATGGTGACAATTGGGTGGGGGGGAAAATaa                   <  1:10255265/35‑1 (MQ=255)
                 tCATTATGGTGACAATTGGGTGGGGGGGAAAATaa                   <  1:18750672/35‑1 (MQ=255)
                  cATTATGGTGACAATTGGGTGGGGGGGAAAATaaa                  <  1:2727823/35‑1 (MQ=255)
                  cATTATGGTGACAATTGGGTGGGGGGGAAAATaaa                  <  1:3842277/35‑1 (MQ=255)
                  cATTATGGTGACAATTGGGTGGGGGGGAAAATaaa                  <  1:732726/35‑1 (MQ=255)
                  cATTATGGTGACAATTGGGTGGGGGGGAAAATaaa                  <  1:7134294/35‑1 (MQ=255)
                    ttATGGTGACAATTGGGTGGGGGGGAAAATAAAGa                <  1:11432058/35‑1 (MQ=255)
                    ttATGGTGACAATTGGGTGGGGGGGAAAATAAAGa                <  1:16953300/35‑1 (MQ=255)
                    ttAAGGTGACAATTGGGTGGGGGGGAAAATAAAGa                >  1:20382712/1‑35 (MQ=255)
                     tATGGTGACAATTGGGTGGGGGGGAAAATAAAGAc               >  1:16319648/1‑35 (MQ=255)
                     tATGGTGACAATTGGGTGGGGGGGAAAATAAAGAc               <  1:14135105/35‑1 (MQ=255)
                     tATGGTGACAATTGGGTGGGGGGGAAAATAAAGAc               >  1:13268658/1‑35 (MQ=255)
                     tATGGTGACAATTGGGTGGGGGGGAAAATAAAGAc               >  1:18225750/1‑35 (MQ=255)
                      aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt              <  1:683481/35‑1 (MQ=255)
                      aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt              <  1:911436/35‑1 (MQ=255)
                      aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt              >  1:10248040/1‑35 (MQ=255)
                      aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt              <  1:1842880/35‑1 (MQ=255)
                       tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc             >  1:6011501/1‑35 (MQ=255)
                       tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc             >  1:8574493/1‑35 (MQ=255)
                       tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc             >  1:4330905/1‑35 (MQ=255)
                        ggTGACAATTGGGTGGGGGGGAAAATAAAGACTCa            >  1:11283749/1‑35 (MQ=255)
                         gTGACAATTGGGTGGGGGGGAAAATAAAGACTCAt           <  1:6624333/35‑1 (MQ=255)
                          tGACAATTGGGTGGGGGGGAAAATAAAGACTCAtt          <  1:13146917/35‑1 (MQ=255)
                          tGACAATTGGGTGGGGGGGAAAATAAAGACTCAtt          >  1:3252817/1‑35 (MQ=255)
                           gACAATTGGGTGGGGGGGAAAATAAAGACTCATTa         >  1:16901267/1‑35 (MQ=255)
                           gACAATTGGGTGGGGGGGAAAATAAAGACTCATTa         <  1:3816319/35‑1 (MQ=255)
                            aCAATTGGGTGGGGGGGAAAATAAAGACTCATTAg        <  1:18787402/35‑1 (MQ=255)
                            aCAATTGGGTGGGGGGGAAAATAAAGACTCATTAg        <  1:11789691/35‑1 (MQ=255)
                             cAATTGGGTGGGGGGGAAAATAAAGACTCATTAGc       >  1:15505162/1‑35 (MQ=255)
                             cAATTGGGTGGGGGGGAAAATAAAGACTCATTAGc       <  1:4628242/35‑1 (MQ=255)
                              aaTTGGGTGGGGGGGAAAATAAAGACTCATTAGCt      <  1:18691932/35‑1 (MQ=255)
                              aaTTGGGTGGGGGGGAAAATAAAGACTCATTAGCt      <  1:7859374/35‑1 (MQ=255)
                               aTTGGGTGGGGGGGAAAATAAAGACTCATTAGCTg     >  1:11260933/1‑35 (MQ=255)
                                ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa    >  1:18213262/1‑35 (MQ=255)
                                ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa    >  1:8900817/1‑35 (MQ=255)
                                ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa    >  1:16794937/1‑35 (MQ=255)
                                ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa    <  1:20591563/35‑1 (MQ=255)
                                 tgggtgggGGGGAAAATAAAGACTCATTAGCTGaa   >  1:7147738/1‑35 (MQ=255)
                                 tgggtgggGGGGAAAATAAAGACTCATTAGCTGaa   >  1:11822704/1‑35 (MQ=255)
                                  gggtgggGGGGAAAATAAAGACTCATTAGCTGAAt  >  1:12252054/1‑35 (MQ=255)
                                  gggtgggGGGGAAAATAAAGACTCATTAGCTGAAt  >  1:16147184/1‑35 (MQ=255)
                                  |                                  
TGTTTAACAAATAATTATCATTATGGTGACAATTGGGTGGGGGGGAAAATAAAGACTCATTAGCTGAAT  >  REL606/422556‑422624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.