New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 445976 =79 (0.770)9 (0.120) 4/36 NT 13.8% coding (944/1287 nt) amtB ammonium transporter
?REL606 3083447 = 53 (0.690)coding (197/495 nt) yqhA hypothetical protein

AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/446015‑445976
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccaACCAGCGTCATATCCACCAGCGACAGCAACACGA  >  REL606/3083447‑3083480
                                                                          
tGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC                                         <  1:16809075/34‑1
AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC                                         >  1:12285131/1‑35
AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC                                         >  1:11793179/1‑35
AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC                                         >  1:1437922/1‑35
AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC                                         >  1:11459237/1‑35
AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC                                         >  1:6086630/1‑35
AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC                                         >  1:942259/1‑35
 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC                                        >  1:6503079/1‑35
 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC                                        >  1:1519634/1‑35
 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC                                        <  1:7187957/35‑1
 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC                                        <  1:11609114/35‑1
 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC                                        >  1:11729304/1‑35
 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC                                        <  1:11733545/35‑1
 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC                                        >  1:2115753/1‑35
 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC                                        >  1:3559149/1‑35
  CAAGCGTTTGAGCATAGTAACGCCCCACAAACCCG                                       >  1:15254533/1‑35
  CAAGCGTTTGAGCATAGTAACGCCCCACAAACCCG                                       >  1:16997011/1‑35
  CAAGCGTTTGAGCATAGTAACGCCCCACAAACCCG                                       >  1:5283853/1‑35
  CAAGCGTTTGAGCATAGTAACGCCCCACAAACCCG                                       >  1:11778983/1‑35
  CAAGCGTTTGAGCATAGTAACGCCCCACAAACCCG                                       >  1:6719432/1‑35
  CAAGCGTTTGAGCATAGTAACGCCCCACAAACCCG                                       <  1:10215712/35‑1
   AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC                                      <  1:5164283/35‑1
   AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC                                      >  1:20549086/1‑35
   AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC                                      >  1:20508059/1‑35
   AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC                                      <  1:5341295/35‑1
   AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC                                      >  1:19122402/1‑35
   AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC                                      <  1:8770471/35‑1
   AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC                                      >  1:18555537/1‑35
   AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC                                      >  1:9430698/1‑35
   AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC                                      >  1:16962256/1‑35
   AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC                                      >  1:15781592/1‑35
   AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC                                      <  1:11197704/35‑1
   AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC                                      <  1:12319358/35‑1
   AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC                                      >  1:12625709/1‑35
    AGCGTTTGAGCATAGTAACGCCCCACAACCCCGCC                                     <  1:19822939/35‑1
    AGCGTTTGAGCATAGTAACGCCCCACAAACCCGCC                                     >  1:8867758/1‑35
    AGCGTTTGAGCATAGTAACGCCCCACAAACCCGCC                                     >  1:6765559/1‑35
    AGCGTTTGAGCATAGTAACGCCCCACAAACCCGCC                                     >  1:11031886/1‑35
    AGCGTTTGAGCATAGTAACGCCCCACAAACCCGCC                                     >  1:5884747/1‑35
     GCGTTTGAGCATAGTAACGCCCCACAAACCCGCCA                                    <  1:11079638/35‑1
     GCGTTTGAGCATAGTAACGCCCCACAAACCCGCCA                                    >  1:9209402/1‑35
     GCGTTTGAGCATAGTAACGCCCCACAAACCCGCCA                                    >  1:8684713/1‑35
                        CCCCAAAAACCCGCCAACCAGCGTCATATCCACCA                 <  1:10918007/35‑1
                         CCCAGAAACCCGCCAACCAGCGTCATATCCACCAG                <  1:7040580/35‑1
                         CCCACAAACCCGCCAACCAGCGTCATATCCACCAG                <  1:19888549/35‑1
                         CCCAAAAACCCGCCAACCAGCGTCATATCCACCAG                <  1:416030/35‑1
                          CCAGAAACCCGCCAACCAGCGTCATATCCACCAGC               <  1:7898509/35‑1
                          CCACAACCCCGCCAACCAGCGTCATATCCACCAGC               <  1:20115861/35‑1
                          CCACAAACCCGCCAACCAGCGTCATATACACCAGC               <  1:5969181/35‑1
                           CACAACCCCGCCAACCAGCGTCATATCCACCAGCG              <  1:6501957/35‑1
                           CACAAACCCGCCAACCAGCGTCATATCCACCAGCG              <  1:14194175/35‑1
                            aacAACCCGCCAACCAGCGTCATATCCACCAGCGA             <  1:8554614/32‑1
                              aacCCCGCCAACCAGCGTCATATCCACCAGCGACA           <  1:6804034/32‑1
                              aacCCCGCCAACCAGCGTCATATCCACCAGCGACA           <  1:8651321/32‑1
                               acCCCGCCAACCAGCGTCATATCCACCAGCGACAG          <  1:11470647/33‑1
                               AACCCGCCACCCAGCGTCATATCCACCAGCGACAG          <  1:15626212/35‑1
                                 CCCGCCACCCAGCGTCATATCCACCAGCGACAGCA        <  1:10939279/35‑1
                                 CCCGCCAACCAGCGTCATATCCACCAGCGACAGCA        <  1:6673678/35‑1
                                 CCCCCCAACCAGCGTCATATCCACCAGCGACAGCA        <  1:14611056/35‑1
                                  CCGCCACCCAGCGTCATATCCACCAGCGACAGCAA       <  1:3145092/35‑1
                                  CCGCCAACCAGCGTCATATCCACCAGCGACAGCAA       >  1:817903/1‑35
                                  CCGCCAACCAGCGTCATATCCACCAGCGACAGCAA       >  1:2195792/1‑35
                                  CCGCCAACCAGCGTCATATCCACCAGCGACAGCAA       >  1:18144691/1‑35
                                  CCGCCAACCAGCGTCATATCCACCAGCGACAGCAA       <  1:17854978/35‑1
                                  CCGCCAACCAGCGTCATATCCACCAGCGACAGCAA       <  1:1689436/35‑1
                                   nGCCAACCAGCGTCATATCCACCAGCGACAGCAAC      >  1:10692519/2‑35
                                   CGCCAACCAGCGTCATATCCACCAGCGACAGCAAC      >  1:13491376/1‑35
                                   CGCCAACCAGCGTCATATCCACCAGCGACAGCAAC      >  1:15300799/1‑35
                                   CGCCAACCAGCGTCATATCCACCAGCGACAGCAAC      >  1:1567142/1‑35
                                    GCCAACCAGCGTCATATCCACCAGCGACAGCAACA     >  1:13710709/1‑35
                                     CCACCCAGCGTCATATCCACCAGCGACAGCAACAC    <  1:12750830/35‑1
                                     CCAACCAGCGTCATATCCACCAGCGACAGCAACAC    <  1:10286828/35‑1
                                     CCAACCAGCGTCATATCCACCAGCGACAGCAACAC    >  1:6908354/1‑35
                                     CCAACCAGCGTCATATCCACCAGCGACAGCAACAC    >  1:5867750/1‑35
                                     CCAACCAGCGTCATATCCACCAGCGACAGCAACAC    <  1:5411364/35‑1
                                     CCAACCAGCGTCATATCCACCAGCGACAGCAACAC    >  1:19888142/1‑35
                                     CCAACCAGCGTCATATCCACCAGCGACAGCAACAC    >  1:18930722/1‑35
                                     CCAACCAGCGTCATATCCACCAGCGACAGCAACAC    >  1:17563606/1‑35
                                     CCAACCAGCGTCATATCCACCAGCGACAGCAACAC    <  1:1564620/35‑1
                                      CAACCAGCGTCATATCCACCAGCGACAGCAACACG   <  1:580456/35‑1
                                       AACCAGCGTCATATCCACCAGCGACAGCAACACGA  >  1:15460935/1‑35
                                       AACCAGCGTCATATCCACCAGCGACAGCAACACGA  >  1:15744411/1‑35
                                                                          
AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/446015‑445976
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccaACCAGCGTCATATCCACCAGCGACAGCAACACGA  >  REL606/3083447‑3083480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.