New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 107576568 (0.660)14 (0.170) 4/38 NT 15.8% coding (220/2547 nt) torA trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit
?REL606 = 3523984 95 (1.170)coding (128/714 nt) livF leucine/isoleucine/valine transporter subunit

Only 100 of 147 total aligned reads displayed.

CCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAA  >  REL606/1075731‑1075799
                                   |                                  
ccGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGG                                    <  1:10988856‑M1/35‑1 (MQ=255)
 cgcgcgACGGTGAAGGATGGTCGCTTTGTggcggc                                   <  1:17222557/35‑1 (MQ=255)
 cgcgcgACGGTGAAGGATGGTCGCTTTGTggcggc                                   <  1:13488639/35‑1 (MQ=255)
 cgcgcgACGGTGAAGGATGGTCGCTTTGTGGCGGg                                   >  1:800654‑M1/1‑34 (MQ=255)
  gcgcgACGGTGAAGGATGGTCGCTTTGTGGCGGCa                                  <  1:4429346/35‑1 (MQ=255)
  gcgcgACGGTGAAGGATGGTCGCTTTGTGGCGGCa                                  <  1:3118640/35‑1 (MQ=255)
   cgcgACGGTGAAGGATGGTCGCTTTGTGGCGGCaa                                 <  1:15282646/35‑1 (MQ=255)
    gcgACGGTGAAGGATGGTCGCTTTGTGGCGGgcgg                                >  1:6846881‑M1/1‑31 (MQ=255)
    gcgACGGTGAAGGATGGTCGCTTTGTGGCGGCaaa                                <  1:9826350/35‑1 (MQ=255)
     cgACGGTGAAGGATGGTCGCTTTGTGGCGGCaaaa                               <  1:8882509/35‑1 (MQ=255)
     cgACGGTGAAGGATGGTCGCTTTGTGGCGGCaaaa                               <  1:12187908/35‑1 (MQ=255)
      gACGGTGAAGGATGGTCGCTTTGTGGCGGgggaac                              >  1:8728639‑M1/1‑29 (MQ=255)
      gACGGTGAAGGATGGTCGCTTTGTGGCGGgggaac                              >  1:2237093‑M1/1‑29 (MQ=255)
      gACGGTGAAGGATGGTCGCTTTGTGGCGGgggaaa                              >  1:904461‑M1/1‑29 (MQ=255)
      gACGGTGAAGGATGGTCGCTTTGTGGCGGggaaaa                              >  1:11190354‑M1/1‑29 (MQ=255)
      gACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAAc                              <  1:11969059/35‑1 (MQ=255)
      gACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAAc                              <  1:18586773/35‑1 (MQ=255)
       aCGGTGAAGGATGGTCGCTTTGTGGCGGgggaaaa                             >  1:753460‑M1/1‑28 (MQ=255)
       aCGGTGAAGGATGGTCGCTTTGTGGCGGggaaacc                             >  1:13771578‑M1/1‑28 (MQ=255)
        cGGTGAAGGATGGTCGCTTTGTGGCGGggaaacag                            >  1:7817771‑M1/1‑27 (MQ=255)
        cGGTGAAGGATGGTCGCTTTGTGGCGGggaaaacg                            >  1:15327233‑M1/1‑27 (MQ=255)
        cGGTGAAGGATGGTCGCTTTGTGGCGGggaaaacg                            >  1:8781299‑M1/1‑27 (MQ=255)
        cGGTGAAGGATGGTCGCTTTGTGGCGGcgaaaacc                            >  1:14402930‑M1/1‑27 (MQ=255)
        cGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCg                            <  1:19609120/35‑1 (MQ=255)
        cGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCg                            <  1:20095471/35‑1 (MQ=255)
        cGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCg                            <  1:8015383/35‑1 (MQ=255)
         ggTGAAGGATGGTCGCTTTGTGGCGGggaaaacgg                           >  1:5167232‑M1/1‑26 (MQ=255)
         ggTGAAGGATGGTCGCTTTGTGGCGGgcaaaaccg                           >  1:5074228‑M1/1‑26 (MQ=255)
         ggTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGt                           <  1:1748242/35‑1 (MQ=255)
         ggTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGt                           <  1:3940711/35‑1 (MQ=255)
          gTGAAGGATGGTCGCTTTGTGGCGGggaaaaccgt                          >  1:5964022‑M1/1‑25 (MQ=255)
          gTGAAGGATGGTCGCTTTGTGGCGGggaaaaccct                          >  1:7988386‑M1/1‑25 (MQ=255)
           tGAAGGATGGTCGCTTTGTGGCGGGGAAACCGCTc                         >  1:14641498/1‑35 (MQ=21)
           tGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTc                         <  1:4315385/35‑1 (MQ=255)
           tGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTc                         <  1:15149811/35‑1 (MQ=255)
           tGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTc                         <  1:11550046/35‑1 (MQ=255)
           tGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTc                         <  1:9921369/35‑1 (MQ=255)
            gAAGGATGGTCGCTTTGTGGCGGGGAAAACGATCg                        >  1:13785118/1‑35 (MQ=16)
            gAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCg                        <  1:3491028/35‑1 (MQ=255)
            gAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCg                        <  1:19701750/35‑1 (MQ=255)
            gAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCg                        <  1:4704376/35‑1 (MQ=255)
            gAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCg                        <  1:6193902/35‑1 (MQ=255)
             aaGGATGGTCGCTTTGTGGCGGGGAAACGGTTcca                       >  1:6842906/1‑33 (MQ=21)
               ggATGGTCGCTTTGTGGCGGGGAAAACCGGTCGaa                      >  1:12404224/1‑35 (MQ=16)
               ggATGGTCGCTTTGTGGCGGCAAAACCGTTCGAAc                     <  1:10118426/35‑1 (MQ=255)
                gATGGTCGCTTTGTGGCGGGGAAACCCTTCGAACt                    >  1:6656746/1‑35 (MQ=25)
                gATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACt                    <  1:18797217/35‑1 (MQ=255)
                gATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACt                    <  1:1142341/35‑1 (MQ=255)
                gATGGTCGCATTGTGGCGGCAAAACCGTTCGAACt                    <  1:2120946/35‑1 (MQ=255)
                 aTGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTg                   <  1:3973253/35‑1 (MQ=255)
                 aTGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTg                   <  1:16108392/35‑1 (MQ=255)
                 aTGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTg                   <  1:6220002/35‑1 (MQ=255)
                 aTGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTg                   <  1:7220764/35‑1 (MQ=255)
                  tGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTgg                  <  1:20092099/35‑1 (MQ=255)
                   ggTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGa                 <  1:19921458/35‑1 (MQ=255)
                   ggTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGa                 <  1:2642326/35‑1 (MQ=255)
                     tggCTTTGTGGCGGCAAAACCGTTCGAACTGGATa               <  1:15040032/33‑1 (MQ=255)
                     tCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATa               <  1:2067763/35‑1 (MQ=255)
                      cGCTTTGTGGCGGCAAAACCGTTCGAACTGGATaa              <  1:14240438/35‑1 (MQ=255)
                      cGCTTTGTGGCGGCAAAACCGTTCGAACTGGATaa              <  1:10256794/35‑1 (MQ=255)
                      cGCTTTGTGGCGGCAAAACCGTTCGAACTGGATaa              <  1:4947885/35‑1 (MQ=255)
                       gCTTTGTGGCGGCAAAACCGTTCGAACTGGATaaa             <  1:18909345/35‑1 (MQ=255)
                       gCTTTGTGGCGGCAAAACCGTTCGAACTGGATaaa             <  1:11793598/35‑1 (MQ=255)
                        cTTTGTGGCGGCAAAACCGTTCGAACTGGATAAat            <  1:18157930/35‑1 (MQ=255)
                        cTTTGTGGCGGAAAAACCGTTCGAACTGGATAAat            <  1:13652876/35‑1 (MQ=255)
                         tttGTTGCGGCAAAACCGTTCGAACTGGATAAata           >  1:4765202/1‑35 (MQ=255)
                         tttGTGGCGGCAAAACCGTTCGAACTGGATAAata           <  1:15581515/35‑1 (MQ=255)
                            gtgGCGGCAAAACCGTTCGAACTGGATAAATATcc        <  1:10764463/35‑1 (MQ=255)
                             tgGCGGCAAAACCGTTCGAACTGGATAAATATCCg       <  1:12643673/35‑1 (MQ=255)
                             tgGCGGCAAAACCGTTCGAACTGGATAAATATCCg       >  1:16810359/1‑35 (MQ=255)
                             tgGCGGCAAAACCGTTCGAACTGGATAAATATCCg       >  1:12108687/1‑35 (MQ=255)
                              ggcggcAAAACCGTTCGAACTGGATAAATATCCGt      >  1:12312127/1‑35 (MQ=255)
                              ggcggcAAAACCGTTCGAACTGGATAAATATCCGt      <  1:8851217/35‑1 (MQ=255)
                              ggcggcAAAACCGTTCGAACTGGATAAATATCCGt      >  1:10300877/1‑35 (MQ=255)
                              ggCGGggaaaaccaccttgcttggtacgttatgcg      <  1:6543526‑M1/35‑31 (MQ=255)
                              ggCGGggaaaaccaccttgcttggtacgttatgcg      >  1:14384699‑M1/1‑5 (MQ=255)
                              ggCGGggaaaaccaccttgcttggtacgttatgcg      <  1:4974025‑M1/35‑31 (MQ=255)
                              ggCGGggaaaaccaccttgcttggtacgttatgcg      <  1:18294291‑M1/35‑31 (MQ=255)
                              ggCGGggaaaaccaccttgcttggtacgttatgcg      >  1:9651681‑M1/1‑5 (MQ=255)
                               gcggcAAAACCGTTCGAACTGGATAAATATCCGTc     >  1:266425/1‑35 (MQ=255)
                               gcggcAAAACCGTTCGAACTGGATAAATATCCGTc     >  1:5353284/1‑35 (MQ=255)
                               gcggcAAAACCGTTCGAACTGGATAAATATCCGTc     <  1:2845917/35‑1 (MQ=255)
                               gcggcAAAACCGTTCGAACTGGATAAATATCCGTc     <  1:1682427/35‑1 (MQ=255)
                               gcggcAAAACCGTTCGAACTGGATAAATATCAGTc     <  1:3256445/35‑1 (MQ=255)
                                cggcAAAACCGTTCGAACTGGATAAATATCCGTCg    >  1:9555477/1‑35 (MQ=255)
                                cggcAAAACCGTTCGAACTGGATAAATATCCGTCg    <  1:15297752/35‑1 (MQ=255)
                                cGGggaaacccaccttgcttggtacgttatgcggc    <  1:7495771‑M1/35‑33 (MQ=255)
                                cGGggaaaaccaccttgcttggtacgttatgcggc    <  1:5825703‑M1/35‑33 (MQ=255)
                                cGGggaaaaccaccttgcttggtacgttatgcggc    >  1:5220328‑M1/1‑3 (MQ=255)
                                  ggggaaaaccaccttgcttggtacgttatgcggcg   >  1:13992608‑M1/1‑2 (MQ=255)
                                  ggggaaaaccaccttgcttggtacgttatgcggcg   <  1:19298804‑M1/35‑34 (MQ=255)
                                  ggcAAAACCGTTCGAACTGGATAAATATCCGTCGa   >  1:448984/1‑35 (MQ=255)
                                  ggcAAAACCGTTCGAACTGGATAAATATCCGTCGa   <  1:228220/35‑1 (MQ=255)
                                  ggcAAAACAGTTCGAACTGGATAAATATCCGTCGa   <  1:14782358/35‑1 (MQ=255)
                                   gggaaaaccaccttgcttggtacgttatgcggcga  >  1:1079538‑M1/1‑1 (MQ=255)
                                   gcAAAACCGTTCGAACTGGATAAATATCCGTCGaa  <  1:8967490/35‑1 (MQ=255)
                                   gcAAAACCGTTCGAACTGGATAAATATCCGTCGaa  <  1:13520935/35‑1 (MQ=255)
                                   gcAAAACCGTTCGAACTGGATAAATATCCGTCGaa  <  1:13658556/35‑1 (MQ=255)
                                   gcAAAACCGTTCGAACTGGATAAATATCCGTCGaa  <  1:1004463/35‑1 (MQ=255)
                                   gcAAAACCGTTCGAACTGGATAAATATCCGTCGaa  >  1:10014007/1‑35 (MQ=255)
                                   |                                  
CCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGCAAAACCGTTCGAACTGGATAAATATCCGTCGAA  >  REL606/1075731‑1075799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.