New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 594300 =32 (0.310)8 (0.110) 5/34 NT 13.7% coding (902/2241 nt) fepA iron‑enterobactin outer membrane transporter
?REL606 = 3534924 78 (1.070)coding (8/1497 nt) ftsY fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein

Only 100 of 123 total aligned reads displayed.

CGCGTAGTTCTGGCGATACAGACGGTTGGTTTCATCGCCATATTTCGAGCGGGTATAGGAATCGGAGTT  >  REL606/594266‑594334
                                  |                                  
cgctTAGTTCTGGCGATACAGACGGTTGGTTTCAt                                    <  1:253501/35‑1 (MQ=255)
cgcgTAGTTCTGGCGATACAGACGGTTGGTTTCAt                                    <  1:17954647/35‑1 (MQ=255)
cgcgTAGTTCTGGCGATACAGACGGTTGGTTTCAt                                    <  1:12382715/35‑1 (MQ=255)
cgcgTAGTTCTGGCGATACAGACGGTTGGTTTCAt                                    <  1:13492026/35‑1 (MQ=255)
cccagccaggaaaaaaagccacgttttttttcttt                                    >  1:6715112‑M1/35‑35 (MQ=255)
cccagccaggaaaaaaagccacgttttttttcttt                                    <  1:25913‑M1/1‑1 (MQ=255)
cccagccaggaaaaaaagccacgttttttttcttt                                    <  1:20319642‑M1/1‑1 (MQ=255)
cccagccaggaaaaaaagccacgttttttttcttt                                    >  1:1799850‑M1/35‑35 (MQ=255)
cccagccaggaaaaaaagccacgttttttttcttt                                    >  1:4397905‑M1/35‑35 (MQ=255)
 gcgTAGTTCGGGCGATACAGACGGTTGGTTTCATc                                   <  1:656710/35‑1 (MQ=255)
 ccagccgggaaaaaaagccacgttttttttctttc                                   >  1:16208497‑M1/34‑35 (MQ=255)
 ccagccaggaaaaaaagccacgttttttttctttc                                   <  1:3715045‑M1/2‑1 (MQ=255)
  cgTAGTTCTGGCGATACAGACGGTTGGTTTCATCg                                  <  1:8293595/35‑1 (MQ=255)
  cgTAGTTCTGGCGATACAGACGGTTGGTTTCATCg                                  <  1:8474428/35‑1 (MQ=255)
  cgTAGTTCTGGCGATACAGACGGTTGGTTTCATCg                                  <  1:3939670/35‑1 (MQ=255)
  cagccaggaaaaaaagccacgttttttttcttTCg                                  <  1:4512341‑M1/3‑1 (MQ=255)
  cagccaggaaaaaaagccacgttttttttcttTCg                                  >  1:9659227‑M1/33‑35 (MQ=255)
  cagccaggaaaaaaagccacgttttttttcttTCg                                  >  1:5119356‑M1/33‑35 (MQ=255)
   gTAGTTCTGGCGATACAGACGGTTGGTTTCATCGc                                 <  1:14701443/35‑1 (MQ=255)
   gTAGTTCTGGCGATACAGACGGTTGGTTTCATCGc                                 <  1:4366670/35‑1 (MQ=255)
   gTAGTTCTGGCGATACAGACGGTTGGTTTCATCGc                                 <  1:13414501/35‑1 (MQ=255)
   gTAGTTCTGGCGATACAGACGGTTGGTTTCATCGc                                 <  1:2626842/35‑1 (MQ=255)
   agccaggaaaaaaagccacgttttttttcttTCGc                                 >  1:3759764‑M1/32‑35 (MQ=255)
   agccaggaaaaaaagccacgttttttttcttTCGc                                 <  1:19505578‑M1/4‑1 (MQ=255)
   agccaggaaaaaaagccacgttttttttcttTCGc                                 <  1:1509726‑M1/4‑1 (MQ=255)
   agccaggaaaaaaagccacgttttttttcttTCGc                                 <  1:3774837‑M1/4‑1 (MQ=255)
    gccaggaaaaaaagccacgttttttttcttTCGcc                                >  1:18011728‑M1/31‑35 (MQ=255)
    gccaggaaaaaaagccacgttttttttcttTCGcc                                <  1:9882835‑M1/5‑1 (MQ=255)
    gccaggaaaaaaagccacgttttttttcttTCGcc                                >  1:3603600‑M1/31‑35 (MQ=255)
    gccaggaaaaaaagccacgttttttttcttTCGcc                                >  1:15118720‑M1/31‑35 (MQ=255)
    gccaggaaaaaaagccacgttttttttcttTCGcc                                <  1:1461539‑M1/5‑1 (MQ=255)
    gccaggaaaaaaagccacgttttttttcttTCGcc                                >  1:10645185‑M1/31‑35 (MQ=255)
    gccaggaaaaaaagccacgttttttttcttTCGcc                                >  1:5518081‑M1/31‑35 (MQ=255)
    ccgaggaaaaaaagccacgttttttttcttTCGcc                                >  1:19972854‑M1/31‑35 (MQ=255)
     tcaggaaaaaaagccacgttttttttcttTCGCCa                               >  1:20203490‑M1/30‑35 (MQ=255)
     ccaggaaaaaaagccacgttttttttcttTCGCCa                               >  1:10293839‑M1/30‑35 (MQ=255)
     ccaggaaaaaaagccacgttttttttcttTCGCCa                               <  1:6389033‑M1/6‑1 (MQ=255)
     ccaggaaaaaaagccacgttttttttcttTCGCCa                               <  1:3468440‑M1/6‑1 (MQ=255)
     ccaggaaaaaaagccacgttttttttcttTCGCCa                               >  1:6090654‑M1/30‑35 (MQ=255)
     ccagaaaaaaaagccacgttttttttcttTCGCCa                               >  1:17912394‑M1/30‑35 (MQ=255)
     atttCTGGCGATCCAGACGGTTGGTTTCATCGCCa                               <  1:3233199/33‑1 (MQ=38)
     aGTTCGGGCGATACAGACGGTTGGTTTCATCGCCa                               <  1:6604092/35‑1 (MQ=255)
      gTTCTGGCGATACAGACGGTTGGTTTCATCGCCat                              <  1:14383291/35‑1 (MQ=255)
      caggaaaaaaagccacgttttttttcttTCGCCat                              <  1:3206793‑M1/7‑1 (MQ=255)
      caggaaaaaaagccacgttttttttcttTCGCCat                              <  1:814584‑M1/7‑1 (MQ=255)
      caggaaaaaaagccacgttttttttcttTCGCCat                              <  1:15097099‑M1/7‑1 (MQ=255)
      caggaaaaaaagccacgttttttttcttTCGCCat                              <  1:15297502‑M1/7‑1 (MQ=255)
      caggaaaaaaagccacgttttttttcttTCGCCat                              <  1:19270934‑M1/7‑1 (MQ=255)
      caggaaaaaaagccacgttttttttcttTCGCCat                              >  1:1855095‑M1/29‑35 (MQ=255)
      cagaaaaaaaagccacgttttttttcttTCGCCat                              >  1:16502806‑M1/29‑35 (MQ=255)
        tcgggCGACACAGACGGTTGGTTTCATCGCCatat                            <  1:1294475/32‑1 (MQ=37)
                  cAGACGGTTGGTTTCATCGCCATATTTCGAGCggg                  >  1:1924125/1‑35 (MQ=255)
                   aGACGGTTGGTTTCATCGCCATATTTCGAGCgggg                 >  1:16863425/1‑34 (MQ=255)
                    gACGGTTGGTTTCATCGCCATATTTCGAGCGGGta                >  1:12844511/1‑35 (MQ=255)
                    gACGGTTGGTTTCATCGCCATATTTCGAGCGGGta                >  1:8934713/1‑35 (MQ=255)
                     aCGGTTGGTTTCATCGCCATATTTCGAGCGGGtat               >  1:9085230/1‑35 (MQ=255)
                     aCGGTTGGTTTCATCGCCATATTTCGAGCGGGtat               >  1:6336573/1‑35 (MQ=255)
                     aCGGTTGGTTTCATCGCCATATTTCGAGCGGGtat               >  1:14246670/1‑35 (MQ=255)
                     aCGGTTGGTTTCATCGCCATATTTCGAGCGGGtat               >  1:919920/1‑35 (MQ=255)
                     aCGGTTGGTTTCATCGCCATATTTCGAGCGGGgat               >  1:9975575/1‑35 (MQ=255)
                      cGGTTGGTTTCATCGCCATATTTCGAGCGGGtata              >  1:14670785/1‑35 (MQ=255)
                      cGGTTGGTTTCATCGCCATATTTCGAGCGGGtata              >  1:6880132/1‑35 (MQ=255)
                       ggttggttTCATCGCCATATTTCGAGCGGGTATAg             >  1:3698658/1‑35 (MQ=255)
                       ggttggttTCATCGCCATATTTCGAGCGGGTATAg             >  1:5030605/1‑35 (MQ=255)
                        ttttttttttTCGCCATATTTCGAGCGGGTATAgg            >  1:3879818‑M1/11‑35 (MQ=255)
                        gttggttTCATCGCCATATTTCGAGCGGGTATAgg            >  1:8201258/1‑35 (MQ=255)
                        gttggttTCATCGCCATATTTCGAGCGGGTATAgg            >  1:16013846/1‑35 (MQ=255)
                         ttggttTCATCGCCATATTTCGAGCGGGTATAGGa           >  1:11659027/1‑35 (MQ=255)
                          ttttttttTCGCCATATTTCGAGCGGGTATAGGaa          >  1:11204005‑M1/9‑35 (MQ=255)
                           ggttTCATCGCCATATTTCGAGCGGGTATAGGAAt         >  1:4164116/1‑35 (MQ=255)
                           ggttTCATCGCCATATTTCGAGCGGGTATAGGAAt         >  1:993792/1‑35 (MQ=255)
                           ggttTCATCGCCATATTTCGAGCGGGTATAGGAAt         >  1:18688194/1‑35 (MQ=255)
                            ttttttTCGCCATATTTCGAGCGGGTATAGGAATc        >  1:10483898‑M1/7‑35 (MQ=255)
                            ttttttTCGCCATATTTCGAGCGGGTATAGGAATc        >  1:13309026‑M1/7‑35 (MQ=255)
                            gttTCATCGCCATATTTCGAGCGGGTATAGGAATc        >  1:8057642/1‑35 (MQ=255)
                            gttTCATCGCCATATTTCGAGCGGGTATAGGAATc        >  1:12641187/1‑35 (MQ=255)
                             tttttTCGCCATATTTCGAGCGGGTATAGGAATCg       >  1:2727194‑M1/6‑35 (MQ=255)
                             tttttTCGCCATATTTCGAGCGGGTATAGGAATCg       >  1:5445805‑M1/6‑35 (MQ=255)
                             tttCATCGCCATATTTCGAGCGGGTATAGGAATCg       >  1:456118/1‑35 (MQ=255)
                             tttCATCGCCATATTTCGAGCGGGTATAGGAATCg       >  1:2906834/1‑35 (MQ=255)
                              ttttTCGCCATATTTCGAGCGGGTATAGGAATCgg      >  1:16297001‑M1/5‑35 (MQ=255)
                              ttttTCGCCATATTTCGAGCGGGTATAGGAATCgg      >  1:1750447‑M1/5‑35 (MQ=255)
                              ttCATCGCCATATTTCGAGCGGGTATAGGAATCgg      >  1:15749926/1‑35 (MQ=255)
                              ttCATCGCCATATTTCGAGCGGGTATAGGAATCgg      >  1:16577758/1‑35 (MQ=255)
                              ttCATCGCCATATTTCGAGCGGGTATAGGAATCgg      >  1:18516624/1‑35 (MQ=255)
                               tttTCGCCATATTTCGAGCGGGTATAGGAATCGGa     >  1:20128146‑M1/4‑35 (MQ=255)
                               tttTCGCCATATTTCGAGCGGGTATAGGAATCGGa     >  1:19328951‑M1/4‑35 (MQ=255)
                               tttTCGCCATATTTCGAGCGGGTATAGGAATCGGa     >  1:16758680‑M1/4‑35 (MQ=255)
                               tttTCGCCATATTTCGAGCGGGTATAGGAATCGGa     >  1:12294432‑M1/4‑35 (MQ=255)
                               tCATCGCCATATTTCGAGCGGGTATAGGAATCGGa     >  1:18697669/1‑35 (MQ=255)
                               tCATCGCAATATTTCGAGCGGGTATAGGAATCGGa     <  1:5618045/35‑1 (MQ=255)
                                cATCGCCATATTTCGAGCTGGTATAGGAATCGGAg    >  1:3911604/1‑35 (MQ=255)
                                  TCGCCATATTTCGAGCGGGTATAGGAATCGGAgtg  >  1:12518768‑M1/1‑34 (MQ=255)
                                  TCGCCATATTTCGAGCGGGTATAGGAATCGGAGtt  >  1:7338924‑M1/1‑35 (MQ=255)
                                  TCGCCATATTTCGAGCGGGTATAGGAATCGGAGtt  >  1:18881853‑M1/1‑35 (MQ=255)
                                  TCGCCATATTTCGAGCGGGTATAGGAATCGGAGtt  <  1:15393489‑M1/35‑1 (MQ=255)
                                  TCGCCATATTTCGAGCGGGTATAGGAATCGGAGtt  <  1:11593321‑M1/35‑1 (MQ=255)
                                  TCGCCATATTTCGAGCGGGTATAGGAATCGGAGtt  <  1:1137864‑M1/35‑1 (MQ=255)
                                  TCGCCATATTTCGAGCGGGTATAGGAATCGGAGtt  <  1:10005560‑M1/35‑1 (MQ=255)
                                  TCGCCATATTTCGAGAGGGTATAGGAATCGGAGtt  >  1:8869761‑M1/1‑35 (MQ=255)
                                  |                                  
CGCGTAGTTCTGGCGATACAGACGGTTGGTTTCATCGCCATATTTCGAGCGGGTATAGGAATCGGAGTT  >  REL606/594266‑594334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.