New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 506020 =104 (1.010)12 (0.120) 4/48 NT 14.8% intergenic (+28/‑62) allR/gcl DNA‑binding transcriptional repressor/glyoxylate carboligase
?REL606 758029 = 34 (0.330)coding (806/1266 nt) tolA cell envelope integrity inner membrane protein TolA

Only 100 of 170 total aligned reads displayed.

TCCATAATGTCTGTCGCATCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTGGAAAAAT  >  REL606/505986‑506054
                                  |                                  
TCCATAATGTCTGTCGCATCCCGCTCTGCGGAGCg                                    >  1:7366013‑M1/1‑35 (MQ=255)
TCCATAATGTCTGTCGCATCCCGCTCTGCGGAGCg                                    >  1:6864845‑M1/1‑35 (MQ=255)
 cttttgccgctgccgcttttttgtctgcggcgggg                                   <  1:13371087‑M1/2‑1 (MQ=255)
 ccATAATGTCTGTCGCATCCCGCTCTGCGGAGCgg                                   <  1:635604/35‑1 (MQ=255)
 ccATAATGTCTGTCGCATCCCGCTCTGCGGAGCgg                                   <  1:4241723/35‑1 (MQ=255)
  cATAATGTCTTTCGCATCCCGCTCTGCGGAGCggg                                  >  1:15809325/1‑35 (MQ=255)
  cATAATGTCTGTCGCATCCCGCTCTGCGGAGCggg                                  <  1:19919840/35‑1 (MQ=255)
  cATAATGTCTGTCGCATCCCGCTCTGCGGAGCggg                                  <  1:14486984/35‑1 (MQ=255)
   tttgccgctgccgcttttttgtctgcggcggggtt                                 <  1:6388349‑M1/4‑3 (MQ=255)
   tttgccgctgccgcttttttgtctgcggcggGGGt                                 <  1:11491063‑M1/4‑1 (MQ=255)
   tttgccgctgccgcttttttgtctgcggcggGGGt                                 <  1:11588932‑M1/4‑1 (MQ=255)
   aTAATGTCTGTCGCATCCCGCTCTGCGGAGCGGGt                                 <  1:9667443/35‑1 (MQ=255)
    ttgccgctgccgcttttttgtctgcggcggGGGtt                                <  1:2313847‑M1/5‑1 (MQ=255)
    tAATGTCTGTCGCATCCCGCTCTGCGGAGCGGGtt                                <  1:15605597/35‑1 (MQ=255)
     tgccgctgccgcttttttgtctgcggcggGGGttt                               <  1:3844024‑M1/6‑1 (MQ=255)
     aaTGTCTGTCGCATCCCGCTCTGCGGAGCGGGttt                               <  1:19827821/35‑1 (MQ=255)
     aaTGTCTGTCGCATCCCGCTCTGCGGAGCGGGttt                               <  1:17303757/35‑1 (MQ=255)
      gccgctgccgcttttttgtctgcggcggGGTtttt                              <  1:13383065‑M1/7‑1 (MQ=255)
      aTGTCTGTCGCATCCCGCTCTGCGGAGCGGGtttt                              <  1:15908053/35‑1 (MQ=255)
      aTGTCTGTCGCATCCCGCTCTGCGGAGCGGGtttt                              <  1:18129522/35‑1 (MQ=255)
        gtctgtcGCATCCCGCTCTGCGGAGCGGGtttttt                            <  1:1876947/35‑1 (MQ=255)
        gtctgtcGCATCCCGCTCTGCGGAGCGGGtttttt                            <  1:12782768/35‑1 (MQ=255)
        cgctgccgcttttttgtctgcggcggGGTtttttt                            <  1:10900420‑M1/9‑1 (MQ=255)
        cgctgccgcttttttgtctgcggcggGGGtttttt                            <  1:1359483‑M1/9‑1 (MQ=255)
        cgctgccgcttttttgtctgcggcggGGGtttttt                            <  1:13892608‑M1/9‑1 (MQ=255)
         tctgtcGCATCCCGCTCTGCGGAGCGGGttttttt                           <  1:17688533/35‑1 (MQ=255)
         tctgtcGCATCCCGCTCTGCGGAGCGGGgtttttt                           >  1:17960462/1‑35 (MQ=255)
         tctgtcGCATCCCGCTCTGCGGAGCGGGgtttttt                           >  1:7038967/1‑35 (MQ=255)
          ctgtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTg                          >  1:11833425/1‑35 (MQ=255)
          ctgtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTg                          <  1:19734725/35‑1 (MQ=255)
          ctgccgcttttttgtctgcggcggGggttttttcc                          <  1:10548781‑M1/11‑3 (MQ=255)
          ctgccgcttttttgtctgcggcggGGgtttttttc                          <  1:8593529‑M1/11‑2 (MQ=255)
           tgtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTGa                         <  1:7195724/35‑1 (MQ=255)
           tgtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTGa                         <  1:17140588/35‑1 (MQ=255)
           tgtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTGa                         <  1:10655953/35‑1 (MQ=255)
           tgccgcttttttgtctgcggcggGggtttttttcc                         <  1:5963280‑M1/12‑3 (MQ=255)
            gtcGCATCCCTCTCTGCGTAGCGGGTTTTTTTGAc                        >  1:12010311/1‑35 (MQ=38)
            gtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTGAc                        <  1:3372512/35‑1 (MQ=255)
            gtcGCATCCCGCTCTGCGGAGCGGGTTTTTTTGAc                        >  1:12177092/1‑35 (MQ=255)
             tcGCATCCCGCTCTGCGGAGCGGGTTTTTTTGACa                       >  1:5727122/1‑35 (MQ=255)
             nngNATCCCGCTCTGCGGAGCGGGTTTTTTTGACn                       <  1:16382361/33‑1 (MQ=255)
              cGCATCCCGCTCTGCGGAGCGGGTTTTTTTGACaa                      <  1:12316295/35‑1 (MQ=255)
              cGCATCCCGCTCTGCGGAGCGGGTTTTTTTGACaa                      <  1:4260981/35‑1 (MQ=255)
               gCATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaa                     <  1:18351427/35‑1 (MQ=255)
               gCATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaa                     >  1:10001112/1‑35 (MQ=255)
               gCATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaa                     <  1:11512460/35‑1 (MQ=255)
               gCATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaa                     <  1:13107440/35‑1 (MQ=255)
                cATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaaa                    <  1:10249246/35‑1 (MQ=255)
                cATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaaa                    >  1:6091502/1‑35 (MQ=255)
                cATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaaa                    <  1:2939664/35‑1 (MQ=255)
                cATCCCGCTCTGCGGAGCGGGTTTTTTTGACaaaa                    <  1:17000832/35‑1 (MQ=255)
                 aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt                   <  1:5296522/35‑1 (MQ=255)
                 aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt                   <  1:11579366/35‑1 (MQ=255)
                 aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt                   <  1:4433417/35‑1 (MQ=255)
                 aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt                   <  1:2923006/35‑1 (MQ=255)
                 aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt                   >  1:14765810/1‑35 (MQ=255)
                 aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt                   >  1:9483847/1‑35 (MQ=255)
                 aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt                   <  1:18580535/35‑1 (MQ=255)
                 aTCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAt                   >  1:19335983/1‑35 (MQ=255)
                  tCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAAtt                  >  1:12686898/1‑35 (MQ=255)
                   cccGCTCTGCGGAGCGGGTTTTTTTGACAAAAttt                 <  1:10725174/35‑1 (MQ=255)
                   cccGCTCTGCGGAGCGGGTTTTTTTGACAAAAttt                 >  1:19494349/1‑35 (MQ=255)
                    ccGCTCTGCGGAGCGGGTTTTTTTGACAAAATTTg                >  1:14886972/1‑35 (MQ=255)
                     cGCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGa               >  1:4131837/1‑35 (MQ=255)
                      gCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGaa              >  1:9028960/1‑35 (MQ=255)
                      gCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGaa              >  1:16348002/1‑35 (MQ=255)
                      gCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGaa              <  1:16087099/35‑1 (MQ=255)
                      gCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGaa              <  1:6205578/35‑1 (MQ=255)
                       ctctGCGGAGCGGGTTTTTTTGACAAAATTTGaaa             <  1:36764/35‑1 (MQ=255)
                       ctctGCGGAGCGGGTTTTTTTGACAAAATTTGaaa             <  1:3080247/35‑1 (MQ=255)
                       ctctGCGGAGCGGGTTTTTTTGACAAAATTTGaaa             <  1:14564148/35‑1 (MQ=255)
                        tctGCGGAGCGGGTTTTTTTGACAAAATTTGAAAg            >  1:6446821/1‑35 (MQ=255)
                        tctGCGGAGCGGGTTTTTTTGACAAAATTTGAAAg            >  1:11117057/1‑35 (MQ=255)
                        tctGCGGAGCGGGTTTTTTTGACAAAATTTGAAAg            >  1:4050970/1‑35 (MQ=255)
                        tctGCGGAGCGGGTTTTTTTGACAAAATTTGAAAg            <  1:14728418/35‑1 (MQ=255)
                        tctGCGGAGCGGGTTTTTTTGACAAAATTTGAAAg            <  1:16893621/35‑1 (MQ=255)
                         ctGCGGAGCTGGTTTTTTTGACAAAATTTGAAAGt           >  1:22024/1‑35 (MQ=255)
                          tGCGGAGCGGGTTTTTTTGACAAAATTTGAAAGtt          >  1:17453651/1‑35 (MQ=255)
                          tGCGGAGCGGGTTTTTTTGACAAAATTTGAAAGtt          <  1:10069422/35‑1 (MQ=255)
                           gCGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTg         <  1:8515220/35‑1 (MQ=255)
                           gCGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTg         >  1:18436599/1‑35 (MQ=255)
                           gCGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTg         <  1:11650257/35‑1 (MQ=255)
                           gCGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTg         <  1:2611127/35‑1 (MQ=255)
                            cGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTgg        >  1:5161854/1‑35 (MQ=255)
                            cGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTgg        >  1:4834149/1‑35 (MQ=255)
                            cGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTgg        <  1:1045284/35‑1 (MQ=255)
                             ggAGCGGGTTTTTTTGACAAAATTTGAAAGTTGGa       <  1:18738820/35‑1 (MQ=255)
                             ggAGCGGGTTTTTTTGACAAAATTTGAAAGTTGGa       >  1:20395459/1‑35 (MQ=255)
                               aGCGGGTTTTTTTGACAAAATTTGAAAGTTGGaaa     <  1:13858797/35‑1 (MQ=255)
                               aGCGGGTTTTTTTGACAAAATTTGAAAGTTGGaaa     >  1:199848/1‑35 (MQ=255)
                               aGCGGGTTTTTTTGACAAAATTTGAAAGTTGGaaa     >  1:1511511/1‑35 (MQ=255)
                                gCGGGTTTTTTTGACAAAATTTGAAAGTTGGaaaa    >  1:11262789/1‑35 (MQ=255)
                                gCGGGTTTTTTTGACAAAATTTGAAAGTTGGaaaa    <  1:9182045/35‑1 (MQ=255)
                                 cGGGTTTTTTTGACAAAATTTGAAAGTTGGaaaaa   >  1:8420895/1‑35 (MQ=255)
                                 cGGGTTTTTTTGACAAAATTTGAAAGTTGGaaaaa   >  1:19595396/1‑35 (MQ=255)
                                 cGGGTTTTTTTGACAAAATTTGAAAGTTGGaaaaa   <  1:4574400/35‑1 (MQ=255)
                                  gggTTTTTTTGACAAAATTTGAAAGTTGGAAAAAt  >  1:11212498/1‑35 (MQ=255)
                                  gggTTTTTTTGACAAAATTTGAAAGTTGGAAAAAt  <  1:14427774/35‑1 (MQ=255)
                                  gggTTTTTTTGACAAAATTTGAAAGTTGGAAAAAt  >  1:17394146/1‑35 (MQ=255)
                                  gggTTTTTTTGACAAAATTTGAAAGTTGGAAAAAt  >  1:5371321/1‑35 (MQ=255)
                                  |                                  
TCCATAATGTCTGTCGCATCCCGCTCTGCGGAGCGGGTTTTTTTGACAAAATTTGAAAGTTGGAAAAAT  >  REL606/505986‑506054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.