New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1430232 =98 (0.950)7 (0.100) 3/34 NT 10.1% coding (2159/3525 nt) ydbK fused predicted pyruvate‑flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein
?REL606 3284457 = 55 (0.760)coding (588/729 nt) mtgA monofunctional biosynthetic peptidoglycan transglycosylase

AAAGTGGTGCCGCCTGAAGCGATGGAAAACGCCCCTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1430272‑1430232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccagTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGCG  >  REL606/3284457‑3284490
                                                                           
gAAGTGGTGCCGCCTGAAGCGATGGAAAACGCCCC                                          >  1:2208018/2‑35
AAAGTGGTGCCGCCTGAAGCGATGGAAAACGCCCC                                          <  1:7564951/35‑1
AAAGTGGTGCCGCCTGAAGCGATGGAAAACGCCCC                                          >  1:5812246/1‑35
AAAGTGGTGCCGCCTGAAGCGATGGAAAACGCCCC                                          >  1:5398374/1‑35
 AAGTGGTGCCGCCTGAATCGATGGAAAACGCCCCT                                         >  1:8535950/1‑35
 AAGTGGTGCCGCCTGAATCGATGGAAAACGCCCCT                                         >  1:16373761/1‑35
 AAGTGGTGCCGCCTGAAGCGATGGAAAACGCCCCT                                         <  1:6459760/35‑1
 AAGTGGTGCCGCCTGAAGCGATGGAAAACGCCCCT                                         >  1:2856243/1‑35
 AAGTGGTGCCGCCTGAAGCGATGGAAAACGCCCCT                                         <  1:1977683/35‑1
 AAGTGGTGCCGCCTGAAGCGATGGAAAACGCCCCT                                         >  1:16835487/1‑35
 AAGTGGTGCCGCCTGAAGCGATGGAAAACGCCCCT                                         >  1:14046071/1‑35
 AAGTGGTGCCGCCTGAAGCGATGGAAAACGCCCCT                                         <  1:1021834/35‑1
  AGTGGTGCCGCCTGAAGCGATGGAAAACGCCCCTG                                        >  1:1161373/1‑35
  AGTGGTGCCGCCTGAAGCGATGGAAAACGCCCCTG                                        >  1:11875314/1‑35
  AGTGGTGCCGCCTGAAGCGATGGAAAACGCCCCTG                                        <  1:7887874/35‑1
  AGTGGTGCCGCCTGAAGCGATGGAAAACGCCCCTG                                        >  1:4717068/1‑35
  AGTGGTGACGCCTGAAGCGATGGAAAACGCCCCTG                                        <  1:3334048/35‑1
   GTGGTGCCGCCTGAAGCGATGGAAAACGCCCCTGC                                       >  1:8921993/1‑35
   GTGGTGCCGCCTGAAGCGATGGAAAACGCCCCTGC                                       >  1:14192073/1‑35
    TGGTGCCGCCTGAAGCGATGGAAAACGCCCCTGCC                                      >  1:17012696/1‑35
    TGGTGCCGCCTGAAGCGATGGAAAACGCCCCTGCC                                      <  1:12838061/35‑1
    TGGTGCCGCCTGAAGCGATGGAAAACGCCCCTGCC                                      >  1:229642/1‑35
    TGGTGCCGCCTGAAGCGATGGAAAACGCCCCTGCC                                      <  1:20243807/35‑1
     GGTGCCGCCTGAAGCTATGGAAAACGCCCCTGCCA                                     >  1:11083961/1‑35
     GGTGCCGCCTGAAGCGATGGAAAACGCCCCTGCCA                                     >  1:6007952/1‑35
      ggGCCGCCTGAAGCGATGGAAAACGCCCCTGCCAG                                    <  1:3521949/33‑1
      GTGCCGCCTGAAGCGATGGAAAAGGCCCCTGCCAG                                    <  1:1259644/35‑1
      GTGCCGCCTGAAGCGATGGAAAACGCCCCTGCCAG                                    <  1:16675612/35‑1
      GTGCCGCCTGAAGCGATGGAAAACGCCCCTGCCAG                                    <  1:5474601/35‑1
      GTGCCGCCTGAAGCGATGGAAAACGCCCCTGCCAG                                    <  1:11142087/35‑1
      GTGCCGCCTGAAGCGATGGAAAACGCCCCTGCCAG                                    >  1:3180452/1‑35
      GTGCCGCCTGAAGCGATGGAAAACGCCCCTGCCAG                                    >  1:8470213/1‑35
      GTGCCGCCTGAAGCGATGGAAAACGCCCCTGCCAG                                    <  1:8087869/35‑1
      GTGCCGCCTGAAGCGATGGAAAACGCCCCTGCCAG                                    >  1:1596381/1‑35
      GTGCCGCCTGAAGCGATGCAAAACGCCCCTGCCAG                                    >  1:8126472/1‑35
      GTGCAGCCTGAAGCGATGGAAAACGCCCCTGCCAG                                    <  1:14900020/35‑1
                       GGAAAACCCCCCTGCCAGTAATGCAGCTTCCGACC                   <  1:9719572/35‑1
                        GAAAACCCCCCTGCCAGTAATGCAGCTTCCGACCG                  <  1:8639598/35‑1
                        GAAAACACCCCTGCCAGTAATGCAGCTTCCGACCG                  <  1:8379599/35‑1
                        GAAAACACCCCTGCCAGTAATGCAGCTTCCGACCG                  <  1:9623199/35‑1
                          tAACCCCCCTGCCAGTAATGCAGCTTCCGACCGGG                <  1:1046908/34‑1
                           AACCCCCCTGCCAGTAATGCAGCTTCCGACCGGGT               <  1:17474359/35‑1
                           AACCCCCCTGCCAGTAATGCAGCTTCCGACCGGGT               <  1:13946148/35‑1
                            cccCCCCTGCCAGTAATGCAGCTTCCGACCGGGTN              <  1:11205032/32‑1
                            cccCCCCTGCCAGTAATGCAGCTTCCGACCGGGTA              <  1:9616769/32‑1
                            accCCCCTGCCAGTAATGCAGCTTCCGACCGGGTA              <  1:2122852/32‑1
                             ccCCCCTGCCAGTAATGCAGCTTCCGACCGGGTAA             <  1:460832/33‑1
                             ccCCCCTGCCAGTAATGCAGCTTCCGACCGGGTAA             <  1:406484/33‑1
                              cCCCCTGCCAGTAATGCAGCTTCCGACCGGGTAAG            <  1:18350050/34‑1
                              cCCCCTGCCAGTAATGCAGCTTCCGACCGGGTAAG            <  1:11747087/34‑1
                               CCCCTGCCAGTAATGCAGCTTCCGACCGGGTAAGT           <  1:6996888/35‑1
                               CCCCTGCCAGTAATGCAGCTTCCGACCGGGTAAGT           <  1:12565281/35‑1
                               CCCCTGCCAGTAATGCAGCTTCCGACCGGGTAAGT           <  1:19758630/35‑1
                                 CCTGCCAGTAATGCAGCTTCCGACCGGGTAAGTTT         <  1:16878466/35‑1
                                  CTGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTG        >  1:17430637/1‑35
                                  CTGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTG        <  1:6014257/35‑1
                                  CTGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTG        <  1:5755216/35‑1
                                  CTGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTG        >  1:459299/1‑35
                                  CTGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTG        <  1:4536649/35‑1
                                  CTGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTG        <  1:15209386/35‑1
                                  CTGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTG        <  1:2684527/35‑1
                                  CTGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTG        >  1:13048670/1‑35
                                   TGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTGC       <  1:8360080/35‑1
                                   TGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTGC       >  1:16246211/1‑35
                                   TGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTGC       >  1:5285808/1‑35
                                   TGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTGC       <  1:16337035/35‑1
                                   TGCCAGTAATGCAGCTTCCGACCGCGTAAGTTTGC       >  1:2861085/1‑35
                                    ctCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCT      <  1:15035378/33‑1
                                    GCCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCT      >  1:19910512/1‑35
                                    GCCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCT      >  1:2958199/1‑35
                                     CCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTC     <  1:7964889/35‑1
                                     CCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTC     <  1:14126373/35‑1
                                     CCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTC     <  1:1663586/35‑1
                                     CCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTC     >  1:13663019/1‑35
                                     CCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTC     >  1:2861729/1‑35
                                     CCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTC     <  1:3111844/35‑1
                                     CCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTC     >  1:11168957/1‑35
                                     CCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTC     >  1:4037507/1‑35
                                      CAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCG    >  1:10911669/1‑35
                                      CAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCG    <  1:6669766/35‑1
                                      CAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCG    <  1:18826190/35‑1
                                      CAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCG    >  1:19961606/1‑35
                                      CAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCG    <  1:15239788/35‑1
                                       AGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGC   >  1:3049267/1‑35
                                       AGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGC   <  1:13552841/35‑1
                                       AGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGC   >  1:15842880/1‑35
                                       AGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGC   <  1:8096177/35‑1
                                       AGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGC   >  1:2096822/1‑35
                                       AGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGC   <  1:10306745/35‑1
                                       AGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGC   <  1:5717255/35‑1
                                       AGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGC   >  1:5979425/1‑35
                                        GTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGCG  <  1:3356124/35‑1
                                        GTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGCG  >  1:3252691/1‑35
                                                                           
AAAGTGGTGCCGCCTGAAGCGATGGAAAACGCCCCTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1430272‑1430232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccagTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGCG  >  REL606/3284457‑3284490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.