New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 73827923 (0.220)14 (0.230) 3/28 NT 31.3% coding (1582/1767 nt) sdhA succinate dehydrogenase flavoprotein subunit
?REL606 = 3686151 48 (0.800)coding (411/741 nt) yiaT hypothetical protein

Only 100 of 114 total aligned reads displayed.

GGATAACCTGATGGAAACGGCGTATGCAACGGCTGTTTCTGCCAACTTCCGTACCGAAAGCCGTGGCGC  >  REL606/738245‑738313
                                  |                                  
ggATAACCTGATGGAAACGGCGTATGCAACGGCTG                                    <  1:14875948‑M1/35‑1 (MQ=255)
 gATAACCTGATGGAAACGGCGTATGCAACGGCTGt                                   <  1:10280969/35‑1 (MQ=255)
 gATAACCTGATGGAAACGGCGTATGCAACGGCTGt                                   <  1:10669175/35‑1 (MQ=255)
 gATAACCTGATGGAAACGGCGTATGCAACGGCTGg                                   >  1:7015642‑M1/1‑34 (MQ=255)
  aTAACCTGATGGAAACGGCGTATGCAACGGCTGgg                                  >  1:15132670‑M1/1‑33 (MQ=255)
  aTAACCTGATGGAAACGGCGTATGCAACGGCTGgg                                  >  1:8459912‑M1/1‑33 (MQ=255)
  aTAACCTGATGGAAACGGCGTATGCAACGGCTGgg                                  >  1:7711143‑M1/1‑33 (MQ=255)
  aTAACCGGATGGAACCGGCGTATGCAACGGCTGtt                                  <  1:18099999/35‑1 (MQ=37)
   tAACCTGATGGAAACGGCGTATGCAACTGCTGttt                                 >  1:18730300/1‑35 (MQ=255)
   tAACCTGATGGAAACGGCGTATGCAACGGCTGggg                                 >  1:7130877‑M1/1‑32 (MQ=255)
   tAACCTGATGGAAACGGCGTATGCAACGGCTGggg                                 >  1:20549116‑M1/1‑32 (MQ=255)
   tAACCTGATGGAAACGGCGTATGCAACGGCTGggg                                 >  1:8587025‑M1/1‑32 (MQ=255)
   tAACCTGATGGAAACGGCGTATGCAACGGCTGggg                                 >  1:18353451‑M1/1‑32 (MQ=255)
    aaCCTGATGGAAACGGCGTATGCAACGGCTGgggg                                >  1:5314132‑M1/1‑31 (MQ=255)
    aaCCTGATGGAAACGGCGTATGCAACGGCTGgggg                                >  1:4136274‑M1/1‑31 (MQ=255)
    aaCCTGATGGAAACGGCGTATGCAACGGCTGgggg                                >  1:14845854‑M1/1‑31 (MQ=255)
    aaCCTGATGGAAACGGCGTATGCAACGGCTGgggg                                >  1:13481049‑M1/1‑31 (MQ=255)
    aaCCTGATGGAAACGGCGTATGCAACGGCTGTTTc                                <  1:15775110/35‑1 (MQ=255)
    aaCCTGATGGAAACGGCGTATGCAACGGCTGTTTc                                <  1:3699086/35‑1 (MQ=255)
    aaCCTGATGGAAACGGCGTATGCAACGGCTGTTTc                                <  1:4006365/35‑1 (MQ=255)
     cccTGATGGAAACGGCGTATGCAACGGCTGTTTCt                               <  1:10195534/34‑1 (MQ=255)
     aCCTGATGGAAACGGCGTATGCAACGGCTGggggt                               >  1:19847067‑M1/1‑30 (MQ=255)
     aCCTGATGGAAACGGCGTATGCAACGGCTGggggg                               >  1:20189968‑M1/1‑30 (MQ=255)
     aCCTGATGGAAACGGCGTATGCAACGGCTGggggg                               >  1:7764397‑M1/1‑30 (MQ=255)
     aCCTGATGGAAACGGCGTATGCAACGGCTGggggg                               >  1:9762873‑M1/1‑30 (MQ=255)
     aCCTGATGGAAACGGCGTATGCAACGGCTGggggg                               >  1:13464865‑M1/1‑30 (MQ=255)
     aCCTGATGGAAACGGCGTATGCAACGGCTGTTTCt                               <  1:395476/35‑1 (MQ=255)
      ccTGATGGAAACGGCGTATGCAACGGCTGgggggg                              >  1:10006171‑M1/1‑29 (MQ=255)
      ccTGATGGAAACGGCGTATGCAACGGCTGgggggg                              >  1:10584170‑M1/1‑29 (MQ=255)
      ccTGATGGAAACGGCGTATGCAACGGCTGgggggg                              >  1:6558491‑M1/1‑29 (MQ=255)
      ccTGATGGAAACGGCGTATGCAACGGCTGgggggg                              >  1:20097752‑M1/1‑29 (MQ=255)
      ccTGATGGAAACGGCGTATGCAACGGCTGgggggg                              >  1:12125571‑M1/1‑29 (MQ=255)
      ccTGATGGAAACGGCGTATGCAACGGCTGTTTCTg                              <  1:12561718/35‑1 (MQ=255)
       cTGATGGAAACGGCGTATGCAACGGCTGggggggg                             >  1:12276588‑M1/1‑28 (MQ=255)
       cTGATGGAAACGGCGTATGCAACGGCTGggggggg                             >  1:14944317‑M1/1‑28 (MQ=255)
       cTGATGGAAACGGCGTATGCAACGGCTGggggggg                             >  1:13907138‑M1/1‑28 (MQ=255)
       cTGATGGAAACGGCGTATGCAACGGCTGggggggg                             >  1:14818217‑M1/1‑28 (MQ=255)
       cTGATGGAAACGGCGTATGCAACGGCTGTTTCTGc                             <  1:4825680/35‑1 (MQ=255)
       cTGATGGAAACGGCGTATGCAACGGCTGTTTCTGc                             <  1:16638796/35‑1 (MQ=255)
        tGATGGAAACGGCGTATGCAACGGCTGgggggggg                            >  1:7092237‑M1/1‑27 (MQ=255)
        ggATGGAAACGGCGTATGCAACGGCTGTTTCTGcc                            <  1:18132156/34‑1 (MQ=255)
         gATGGAAACGGCGTATGCAACGGCTGggggggggg                           >  1:10007689‑M1/1‑26 (MQ=255)
         gATGGAAACGGCGTATGCAACGGCTGggggggggg                           >  1:19057288‑M1/1‑26 (MQ=255)
         gATGGAAACGGCGTATGCAACGGCTGTTTCTGCCa                           <  1:6002004/35‑1 (MQ=255)
          aTGGAAACGGCGTATGCAACGGCTGTTTCTGCCaa                          <  1:11589716/35‑1 (MQ=255)
          aTGAAAACGGCGTATGCAACGGCTGTTTCTGCCaa                          <  1:10714321/35‑1 (MQ=255)
           tGGAACCGGCGTATGCAACGGCTGTTTCTGCCAAc                         <  1:14502458/35‑1 (MQ=255)
           tGGAACCGGCGTATGCAACGGCTGTTTCTGCCAAc                         <  1:11740980/35‑1 (MQ=255)
           tGGAAACGGCGTATGCAACTGCTGTTTCTGCCAAc                         >  1:20322684/1‑35 (MQ=255)
           tGGAAACGGCGTATGCAACGGCTGTTTCTGCCAAc                         <  1:15236864/35‑1 (MQ=255)
           tGGAAACGGCGTATGCAACGGCTGTTTATGCCAAc                         <  1:13954386/35‑1 (MQ=255)
            ggAAACGGCGTATGCAACGGCTGTTTCTGCCAACt                        <  1:13928224/35‑1 (MQ=255)
            ggAAACGGCGTATGCAACGGCTGTTTCTGCAAACt                        <  1:5426570/35‑1 (MQ=255)
             gAAGCGGCGTATGCAACGGCTGTTTCTGCCAACtt                       <  1:11758568/35‑1 (MQ=255)
             gAACCGGCGTATGCAACGGCTGTTTCTGCCAACtt                       <  1:13449971/35‑1 (MQ=255)
             gAAACGGCGTATGCAACGGCTGTTTCTGCCAACtt                       <  1:11127056/35‑1 (MQ=255)
              aaaCGGCGTATGCAACGGCTGTTTCTGCCAACTTc                      <  1:15288128/35‑1 (MQ=255)
              aaaCGGCGTATGCAACGGCTGTTTCTGCCAACTTc                      <  1:14015852/35‑1 (MQ=255)
              aaaCGGCGTATGCAACGGCTGTTTCTGCCAACTTc                      <  1:18520192/35‑1 (MQ=255)
                         gCAACGGCTGggtgggggagctatcggtattccac           <  1:1821544‑M1/35‑26 (MQ=255)
                         gCAACCGCTGggtgggggagctatcggtattccac           <  1:2545726‑M1/35‑26 (MQ=255)
                           aaCGGCTGggtgggggagctatcggtattccacaa         <  1:12533285‑M1/35‑28 (MQ=255)
                            aCGGCTGggtgggggagctatcggtattccacaaa        <  1:15424540‑M1/35‑29 (MQ=255)
                            aCGGCTGggtgggggagctatcggtattccacaaa        <  1:11868994‑M1/35‑29 (MQ=255)
                             cGGCTGggtgggggagctatcggtattccacaaaa       <  1:9747988‑M1/35‑30 (MQ=255)
                             cGGCTGggtgggggagctatcggtattccacaaaa       <  1:7745091‑M1/35‑30 (MQ=255)
                             cGGCTGggggggggagctatcggtattccacaaaa       >  1:18567096‑M1/1‑6 (MQ=255)
                              ggCTGggtgggggagctatcggtattccacaaaat      >  1:5536708‑M1/1‑5 (MQ=255)
                              ggCTGggtgggggagctatcggtattccacaaaat      <  1:15606344‑M1/35‑31 (MQ=255)
                              ggCTGggtgggggagctatcggtattccacaaaat      <  1:2389011‑M1/35‑31 (MQ=255)
                              ggCTGggtgggggagctatcggtattccacaaaat      <  1:14715631‑M1/35‑31 (MQ=255)
                              ggCTGggtgggggagctatcggtattccacaaaat      <  1:12643955‑M1/35‑31 (MQ=255)
                              ggCTGggtgggggagctatcgggattccacaaaat      >  1:2887404‑M1/1‑5 (MQ=255)
                               gCTGggtgggggagctatcggtattccacaaaatg     <  1:3286444‑M1/35‑32 (MQ=255)
                               gCTGggtgggggagctatcggtattccacaaaatg     >  1:6690039‑M1/1‑4 (MQ=255)
                               gCTGggtgggggagctatcggtattccacaaaatg     >  1:15467146‑M1/1‑4 (MQ=255)
                               gCTGggtgggggagctatcggtattccacaaaatg     <  1:9119499‑M1/35‑32 (MQ=255)
                               gCTGTTTCTGCCAACTTCCGTACCGAAAGCCGTgg     >  1:17625448/1‑35 (MQ=255)
                               gCTGTTTCTGCCAACTTCCGTACCGAAAGCCGTgg     >  1:4191982/1‑35 (MQ=255)
                                ttgggtgggggagctatcggtattccacaaaatgc    <  1:5690885‑M1/34‑33 (MQ=255)
                                cTGggtgggggagctatgggtattccacaaaatgc    >  1:16654990‑M1/1‑3 (MQ=255)
                                cTGggtgggggagctatcggtattccacaaaatgc    <  1:10957298‑M1/35‑33 (MQ=255)
                                cTGggtgggggagctatcggtattccacaaaatgc    <  1:19370106‑M1/35‑33 (MQ=255)
                                cTGggtgggggagctatcggtattccacaaaatgc    <  1:15936037‑M1/35‑33 (MQ=255)
                                cTGggtgggggagctatcggtattccacaaaatgc    >  1:1435498‑M1/1‑3 (MQ=255)
                                cTGTTTCTGCCAACTTCCGTACCGAAAGCCGTGgc    >  1:1504785/1‑35 (MQ=255)
                                 tgggttggggagctatcggtattccacaaaatgca   >  1:11538173‑M1/1‑2 (MQ=255)
                                 tgggtgggggagctatcggtattccacaaaatgca   >  1:9488132‑M1/1‑2 (MQ=255)
                                 tgggtgggggagctatcggtattccacaaaatgca   >  1:9132011‑M1/1‑2 (MQ=255)
                                 tgggtgggggagctatcggtattccacaaaatgca   >  1:14267212‑M1/1‑2 (MQ=255)
                                 tgggtgggggagctatcggtattccacaaaatgca   <  1:15989903‑M1/35‑34 (MQ=255)
                                 tgggtgggggagctatcggtattccacaaaatgca   <  1:4535986‑M1/35‑34 (MQ=255)
                                 tgggtgggggagctatcggtattccacaaaatgca   <  1:11429928‑M1/35‑34 (MQ=255)
                                 tgggtgggggagctatcggtattccacaaaatgca   <  1:4661692‑M1/35‑34 (MQ=255)
                                 tgggtgggggagctatcggtattccacaaaatgca   >  1:1259695‑M1/1‑2 (MQ=255)
                                 tGTTTCTGCCAACTTCCGTACCGAAAGCCGTGgcg   >  1:2913623/1‑35 (MQ=255)
                                 tGTTTCTGCCAACTTCCGTACCGAAAGCCGTGgcg   >  1:12072328/1‑35 (MQ=255)
                                  gggtgggggagctatcggtattccacaaaatgcag  <  1:18796831‑M1/35‑35 (MQ=255)
                                  gggtgggggagctatcggtattccacaaaatgcag  <  1:2788312‑M1/35‑35 (MQ=255)
                                  gggtgggggagctatcggtattccacaaaatgcag  <  1:7449033‑M1/35‑35 (MQ=255)
                                  |                                  
GGATAACCTGATGGAAACGGCGTATGCAACGGCTGTTTCTGCCAACTTCCGTACCGAAAGCCGTGGCGC  >  REL606/738245‑738313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.