New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 255937 =63 (0.610)13 (0.150) 7/40 NT 22.5% coding (477/1056 nt) dinB DNA polymerase IV
?REL606 3367494 = 37 (0.430)intergenic (‑80/+27) yhdN/rplQ hypothetical protein/50S ribosomal protein L17

Only 100 of 140 total aligned reads displayed.

TCGCCAAAATCGCCTCCGACATGAATAAACCCAACGGCCAGTTTGTGATTACGCCGGCAGAAGTTCCGG  >  REL606/255903‑255971
                                  |                                  
tcGCCAAAATCGCCTCCGACATGAATAAACCCTAc                                    >  1:14768326/1‑35 (MQ=255)
tcGCCAAAATCGCCTCCGACATGAATAAACCCAAc                                    >  1:16942551/1‑35 (MQ=255)
tcGCCAAAATCGCCTCCGACATGAATAAACCCAAc                                    <  1:20524439/35‑1 (MQ=255)
tcGCCAAAATCGCCTCCGACATGAATAAACCCAAc                                    <  1:9357260/35‑1 (MQ=255)
tcGCCAAAATCGCCTCCGACATGAATAAACCCAAc                                    <  1:12841369/35‑1 (MQ=255)
tcGCCAAAATCGCCTCCGACATGAATAAACCCAAc                                    <  1:7848482/35‑1 (MQ=255)
ccGCAAAAATCGCCTCCGACATGAATAAACCCAAc                                    <  1:11939357/34‑1 (MQ=255)
agagtaatctgaagcaacgtaaaaaaccccgcccc                                    >  1:2447313‑M1/35‑35 (MQ=255)
agagtaatctgaagcaacgtaaaaaaacccgcccc                                    <  1:17595087‑M1/1‑1 (MQ=255)
agagtaatctgaagcaacgtaaaaaaacccgcccc                                    >  1:10278170‑M1/35‑35 (MQ=255)
agagtaatctgaagcaacgtaaaaaaacccgcccc                                    <  1:14759536‑M1/1‑1 (MQ=255)
 gagtaatctgaagcaacgtaaaaaaccccgcccCg                                   >  1:7259565‑M1/34‑35 (MQ=255)
 gagtaatctgaagcaacgtaaaaaaacccgcccCg                                   <  1:10098887‑M1/2‑1 (MQ=255)
 cGCCAAAATCGCCTCCGACATGAATAAACCCAACg                                   <  1:10314719/35‑1 (MQ=255)
 cGCCAAAATCGCCTCCGACATGAATAAACCCAACg                                   >  1:10515472/1‑35 (MQ=255)
 cGCCAAAATCGCCTCCGACATGAATAAACCCAACg                                   <  1:5859579/35‑1 (MQ=255)
  gCCAAAATCGCCTCCGACATGAATAAACCCAACgg                                  <  1:9717136/35‑1 (MQ=255)
  gCCAAAATCGCCTCCGACATGAATAAACCCAACgg                                  <  1:2658614/35‑1 (MQ=255)
  gCCAAAATCGCCTCCGACATGAATAAACCCAACgg                                  <  1:12205081/35‑1 (MQ=255)
  agtaatctgaagcaacgtaaaaaaacccgcccCgg                                  <  1:13568273‑M1/3‑1 (MQ=255)
  agtaatctgaagcaacgtaaaaaaacccgcccCgg                                  >  1:19636477‑M1/33‑35 (MQ=255)
  agtaatctgaagcaacgtaaaaaaacccgcccCgg                                  <  1:20176470‑M1/3‑1 (MQ=255)
  agtaatctgaagcaacgtaaaaaaacccgcccCgg                                  >  1:4052160‑M1/33‑35 (MQ=255)
   gtaatctgaagcaacgtaaaaaaacccgcccCGGc                                 <  1:19595732‑M1/4‑1 (MQ=255)
   gtaatctgaagcaacgtaaaaaaacccgcccCGGc                                 <  1:6218336‑M1/4‑1 (MQ=255)
   ccAAAATCGCCTCCGACATGAATAAACCCAACGGc                                 >  1:13916569/1‑35 (MQ=255)
   ccAAAATCGCCTCCGACATGAATAAACCCAACGGc                                 >  1:6423633/1‑35 (MQ=255)
   ccAAAATCCCCTCCGACATGAATAAACACAACGGc                                 <  1:19823467/35‑1 (MQ=37)
    cAAAATCGCCTCCGACATGAATAAACCCAACGGcc                                >  1:11141612/1‑35 (MQ=255)
    cAAAATCGCCTCCGACATGAATAAACCCAACGGcc                                >  1:16061371/1‑35 (MQ=255)
    aaaaaTCGCCTCCGACATGAATAAACCCACCGGcc                                <  1:5556624/34‑1 (MQ=255)
     aaaaTCGCCTCCGACATGAATAAACCCAACGGCCa                               >  1:800764/1‑35 (MQ=255)
     aaaaTCGCCTCCGACATGAATAAACCCAACGGCCa                               >  1:16979444/1‑35 (MQ=255)
      aaaTCGCCTCCGACATGAATAAACCCAACGGCCAg                              >  1:5340462/1‑35 (MQ=255)
        aTCGCCTCCGACATGAATAAACCCAACGGCCAGtt                            >  1:14516070/1‑35 (MQ=255)
        aTCGCCTCCGACATGAATAAACCCAACGGCCAGtt                            >  1:9532272/1‑35 (MQ=255)
           gCCTCCGACATGAATAAACCCAACGGCCAGTTtgt                         >  1:11418279/1‑35 (MQ=255)
           gCCTCCGACATGAATAAACCCAACGGCCAGTTtgt                         >  1:17782082/1‑35 (MQ=255)
           gCCTCCGACATGAATAAACCCAACGGCCAGTTtgt                         >  1:13031558/1‑35 (MQ=255)
            ccTCCGACATGAATAAACCCAACGGCCAGTTtgtg                        >  1:16322265/1‑35 (MQ=255)
            ccTCCGACATGAATAAACCCAACGGCCAGTTtgtg                        >  1:12569312/1‑35 (MQ=255)
             cTCCGACATGAATAAACCCAACGGCCAGTTtgtgc                       >  1:1738134/1‑34 (MQ=255)
             cTCCGACATGAATAAACCCAACGGCCAGTTTGTGa                       >  1:9907448/1‑35 (MQ=255)
             cTCCGACATGAATAAACCCAACGGCAAGTTTGTGa                       <  1:14436674/35‑1 (MQ=255)
              tCCGACGTGAATAAACCCAACGGCCAGTTTGTGAt                      >  1:19017756/1‑35 (MQ=255)
              tCCGACATGAATAAACCCAACGGCCAGTTTGTGAt                      >  1:3590571/1‑35 (MQ=255)
              tCCGACATGAATAAACCCAACGGCCAGTTTGTGAt                      >  1:19756976/1‑35 (MQ=255)
               ccGACATGAATAAACCCAACGGCCAGTTTGTGAtt                     >  1:18497752/1‑35 (MQ=255)
                cGACATGAATAAACCCAACGGCCAGTTTGTGATTa                    >  1:4105474/1‑35 (MQ=255)
                 gACATGAATAAACCCAACGGCCAGTTTGTGATTAc                   >  1:10617483/1‑35 (MQ=255)
                 gACATGAATAAACCCAACGGCCAGTTTGTGATTAc                   >  1:3564381/1‑35 (MQ=255)
                  aCATGAATAAACCCAACGGCCAGTTTGTGATTACg                  >  1:8478446/1‑35 (MQ=255)
                  aCATGAATAAACCCAACGGCCAGTTTGTGATTACg                  >  1:18616144/1‑35 (MQ=255)
                  aCATGAATAAACCCAACGGCCAGTTTGTGATTACg                  >  1:13767802/1‑35 (MQ=255)
                   cATGAATAAACCCAACGGCCAGTTTGTGATTACGc                 >  1:6115664/1‑35 (MQ=255)
                    aTGAATAAACCCAACGGCCAGTTTGTGATTACGcc                >  1:14659485/1‑35 (MQ=255)
                    aTGAATAAACCCAACGGCCAGTTTGTGATTACGcc                >  1:13880431/1‑35 (MQ=255)
                    aTGAATAAACCCAACGGCCAGTTTGTGATTACGcc                >  1:7144929/1‑35 (MQ=255)
                     tGAATAAACCCAACGGCCAGTTTGTGATTACGCCg               >  1:4610762/1‑35 (MQ=255)
                     tGAATAAACCCAACGGCCAGTTTGTGATTACGCCg               >  1:10145990/1‑35 (MQ=255)
                     tGAATAAACCCAACGGCCAGTTTGTGATTACGCCg               >  1:16501758/1‑35 (MQ=255)
                     aaaaaacccccccCGGCCAGTTTGTGATTACGCCg               >  1:6717212‑M1/14‑35 (MQ=255)
                       aaaacccccccCGGCCAGTTTGTGATTACGCCGGc             >  1:11208643‑M1/12‑35 (MQ=255)
                       aaTAAACCCAACGGCCAGTTTGTGATTACGCCGGc             >  1:15437254/1‑35 (MQ=255)
                        aTAAACCCAACGGCCAGTTTGTGATTACGCCgggc            >  1:5072534/1‑33 (MQ=255)
                        aTAAACCCAACGGCCAGTTTGTGATTACGCCggga            >  1:6218459/1‑33 (MQ=255)
                        aTAAACCCAACGGCCAGTTTGTGATTACGCCGGCa            >  1:10650259/1‑35 (MQ=255)
                        aTAAACCCAACGGCCAGTTTGTGATTACGCCGGCa            >  1:20195141/1‑35 (MQ=255)
                        aTAAACCCAACGGCCAGTTTGTGATTACGCCGGCa            >  1:636794/1‑35 (MQ=255)
                         tAAACCCAACGGCCAGTTTGTGATTACGCCGGcgg           >  1:7088707/1‑33 (MQ=255)
                         tAAACCCAACGGCCAGTTTGTGATTACGCCGGGAg           >  1:10786637/1‑35 (MQ=255)
                         tAAACCCAACGGCCAGTTTGTGATTACGCCGGCAg           >  1:18023070/1‑35 (MQ=255)
                         tAAACCCAACGGCCAGTTTGTGATTACGCCGGCAg           >  1:1106709/1‑35 (MQ=255)
                         cacccccccCGGCCAGTTTGTGATTACGCCGGCAg           >  1:6650613‑M1/10‑35 (MQ=255)
                         aacccccccCGGCCAGTTTGTGATTACGCCGGCAg           >  1:13804474‑M1/10‑35 (MQ=255)
                          ccccccccCGGCCAGTTTGTGATTACGCCGGCAGa          >  1:593729‑M1/9‑35 (MQ=255)
                          acccccccCGGCCAGTTTGTGATTACGCCGGCAGa          >  1:7540865‑M1/9‑35 (MQ=255)
                          acccccccCGGCCAGTTTGTGATTACGCCGGCAGa          >  1:2988450‑M1/9‑35 (MQ=255)
                          aaaCCCAACGGCCAGTTTGTGATTACGCCGGCAGa          >  1:16677456/1‑35 (MQ=255)
                          aaaCCCAACGGCCAGTTTGTGATTACGCCGGCAGa          >  1:13364235/1‑35 (MQ=255)
                           cccccccCGGCCAGTTTGTGATTACGCCGGCAGaa         >  1:13294908‑M1/8‑35 (MQ=255)
                           cccccccCGGCCAGTTTGTGATTACGCCGGCAGaa         >  1:2118317‑M1/8‑35 (MQ=255)
                           aaCCCAACGGCCAGTTTGTGATTACGCCGGCAGaa         >  1:945250/1‑35 (MQ=255)
                            ccccccCGGCCAGTTTGTGATTACGCCGGCAGAAg        >  1:16182297‑M1/7‑35 (MQ=255)
                            aCCCAACGGCCAGTTTGTGATTACGCCGGCAGAAg        >  1:11709307/1‑35 (MQ=255)
                            aCCCAACGGCCAGTTTGTGATTACGCCGGCAGAAg        >  1:8619637/1‑35 (MQ=255)
                             cccccCGGCCAGTTTGTGATTACGCCGGCAGAAGt       >  1:8065194‑M1/6‑35 (MQ=255)
                             cccccCGGCCAGTTTGTGATTACGCCGGCAGAAGt       >  1:4569320‑M1/6‑35 (MQ=255)
                              ccccCGGCCAGTTTGTGATTACGCCGGCAGAAGtt      >  1:18597655‑M1/5‑35 (MQ=255)
                              ccccCGGCCAGTTTGTGATTACGCCGGCAGAAGtt      >  1:2002588‑M1/5‑35 (MQ=255)
                              ccAACGGCCAGTTTGTGATTACGCCGGCAGGAGtt      >  1:17279393/1‑35 (MQ=255)
                              ccAACGGCCAGTTTGTGATTACGCCGGCAGAAggt      >  1:20333399/1‑33 (MQ=255)
                              ccAACGGCCAGTTTGTGATTACGCCGGCAGAAGtt      >  1:19440893/1‑35 (MQ=255)
                               cccCGGCCAGTTTGTGATTACGCCGGCAGAAGTTc     >  1:6814676‑M1/4‑35 (MQ=255)
                                ccCGGCCAGTTTGTGATTACGCCGGCAGAAGTTcc    >  1:8084689‑M1/3‑35 (MQ=255)
                                ccCGGCCAGTTTGTGATTACGCCGGCAGAAGTTcc    >  1:15709084‑M1/3‑35 (MQ=255)
                                ccCGGCCAGTTTGTGATTACGCCGGCAGAAGTTcc    >  1:17411677‑M1/3‑35 (MQ=255)
                                 cCGGCCAGTTTGTGATTACGCCGGCAGAAGTTCCg   >  1:16614247‑M1/2‑35 (MQ=255)
                                  CGGCCAGTTTGTGATTACGCCGGCAGAAGTTCCgg  >  1:17970301‑M1/1‑35 (MQ=255)
                                  CGGCCAGTTTGTGATTACGCCGGCAGAAGTTCCgg  >  1:1930745‑M1/1‑35 (MQ=255)
                                  |                                  
TCGCCAAAATCGCCTCCGACATGAATAAACCCAACGGCCAGTTTGTGATTACGCCGGCAGAAGTTCCGG  >  REL606/255903‑255971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.