New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 687921 | 62 (0.600) | 12 (0.130) | 4/44 | NT | 12.4% | coding (1883/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA components |
? | REL606 | 970674 = | 112 (1.190) | intergenic (‑27/+28) | pflB/focA | pyruvate formate lyase I/formate transporter |
GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/687886‑687921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttTTTTATTTACTGCGTACTTCGACAACCATTAATG > REL606/970674‑970707 GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCT < 1:11449033/35‑1 GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCT < 1:664615/35‑1 GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCT < 1:1588403/35‑1 GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCT < 1:12690157/35‑1 GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCT > 1:642426/1‑35 GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCT < 1:14864143/35‑1 GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT > 1:4865977/1‑35 GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT < 1:17916703/35‑1 GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT < 1:5045756/35‑1 GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT < 1:1558219/35‑1 GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT < 1:6171197/35‑1 GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT < 1:6479535/35‑1 TGGTTTGCAGCAATATCGACGATTTCAGTGGCTTT > 1:16440046/1‑35 TGGTTTGCAGCAATATCGACGATTTCAGTGGCTTT > 1:16818460/1‑35 TGGTTTGCAGCAATATCGACGATTTCAGTGGCTTT > 1:7775530/1‑35 GGTTTGCAGCAATATCGACGATTTCAGTGGCTTcg > 1:1055615/1‑33 GGTTTGCAGCAATATCGACGATTTCAGTGGCTTTT > 1:14865835/1‑35 GGTTTGCAGCAATATCGACGATTTCAGTGGCTTTT > 1:13833834/1‑35 GGTTTGCAGCAATATCGACGATTTCAGTGGCTTTT > 1:1261750/1‑35 GTTTGCAGCAATATCGACGATTTCAGTGGCTTTat > 1:19049115/1‑33 GTTTGCAGCAATATCGACGATTTCAGTGGCTTTTT > 1:7092271/1‑35 TTTGCAGCAATATCGACGATTTCAGTGGCTTTTTT > 1:19177186/1‑35 TTTGCAGCAATATCGACGATTTCAGTGGCTTTTTT > 1:20163532/1‑35 TTGCAGCAATATCGACGATTTCAGTGGCTTTTTTA > 1:10681714/1‑35 TGCAGCAATATCGACGATTTCAGTGGCTTTTTTAT > 1:7836629/1‑35 GCAGCAATATCGACGATTTCAGTGGCTTTATTATT > 1:18974411/1‑35 CAGCAATATCGACGATTTCAGTGGCTTTTTTATTT > 1:4856712/1‑35 CAGCAATATCGACGATTTCAGTGGCTTTTTCATTa > 1:14518547/1‑34 AGCAATATCGACGATTTCAGTGGCTTTTTTATTaa > 1:19477626/1‑33 AGCAATATCGACGATTTCAGTGGCTTTTTTATTTA > 1:14334328/1‑35 AGCAATATCGACGATTTCAGTGGCTTTTTTATTTA > 1:13463554/1‑35 AGCAATATCGACGATTTCAGTGGCTTTTTTATTTA > 1:8357249/1‑35 AGCAATATCGACGATTTCAGTGGCTTTTTCATTTA > 1:6399151/1‑35 CAATATCGACGATTTCAGTGGCTTTTTTATTTAaa > 1:11968485/1‑33 CAATATCGACGATTTCAGTGGCTTTTTTATTTAaa > 1:8214687/1‑33 AATATCGACGATTTCAGTGGCTTTTTTATTTAatc > 1:197555/1‑32 TTTTTATTTACTGCGTACTTCGACAACCATTAATG > 1:15786843/1‑35 TTTTTATTTACTGCGTACTTCGACAACCATTAATG > 1:3280050/1‑35 GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/687886‑687921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttTTTTATTTACTGCGTACTTCGACAACCATTAATG > REL606/970674‑970707 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |