New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 294203 =75 (0.730)12 (0.160) 3/36 NT 18.3% intergenic (+473/‑54) ykgD/ykgE predicted DNA‑binding transcriptional regulator/predicted oxidoreductase
?REL606 836230 = 51 (0.660)coding (1876/2226 nt) ybiO predicted mechanosensitive channel

CATGCCCATTTATGCCCGATGTTTCCCCCCCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/294237‑294203
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccgAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGT  >  REL606/836230‑836263
                                                                     
CATGCCCATTTATGCCCGATGTTTCCCCCCCACCG                                    <  1:13957612/35‑1
CATGCCCATTTATGCCCGATGTTTCCCCCCCACCG                                    <  1:11116027/35‑1
CATGCCCATTTATGCCCGATGTTTCCCCCCCACCG                                    <  1:11533299/35‑1
                  ataTTTCCCCCCCACCGAACCAATGCCGCGGACAA                  <  1:19425606/32‑1
                  aaaTTTCCCCCCCACCGAACCAATGCCGCGGACAA                  <  1:16101204/32‑1
                    tTTTTCCCCCCACCGAACCAATGCCGCGGACAAAG                <  1:14172639/34‑1
                    aTTTCCCCCCCACCGAACCAATGCCGCGGACAAAG                <  1:19058345/34‑1
                     aTTCCCCCCCACCGAACCAATGCCGCGGACAAAGT               <  1:3143252/34‑1
                     TTTGCCCCCCACCGAACCAATGCCGCGGACAAAGT               <  1:2408103/35‑1
                     TTTCCCCCCCACCGAACCAATGCCGCGGACAAAGT               <  1:9161145/35‑1
                     TTTCCCCCCCACCGAACCAATGCCGCGGACAAAGT               <  1:9641579/35‑1
                      ttgCCCCCCACCGAACCAATGCCGCGGACAAAGTT              <  1:18876735/32‑1
                      TTCCCCCCCACCGAACCAATGCCGCGGACAAAGTT              <  1:11009195/35‑1
                      TTCCCCCCCACCGAACCAATGCCGCGGACAAAGTT              <  1:6133603/35‑1
                       ttCCCCCCACCGAACCAATGCCGCGGACAAAGTTA             <  1:8068942/33‑1
                       ccgCCCCCACCGAACCAATGCCGCGGACAAAGTTA             <  1:12676819/32‑1
                       TCCCCCCCCCCGAACCAATGCCGCGGACAAAGTTA             <  1:13430588/35‑1
                       TCCCCCCCACCGAACCAATGCCGCGGACAAAGTTA             <  1:796267/35‑1
                        aCCCCCCACCGAACCAATGCCGCGGACAAAGTTAG            <  1:11470925/34‑1
                         CCCCCCACCGAACCAATGCCGCGGACAAAGTTAGC           <  1:6675886/35‑1
                          CCCCCACCGAACCAATGCCGCGGACAAAGTTAGCA          <  1:6902590/35‑1
                          CCCCCACCGAACCAATGCCGCGGACAAAGTTAGCA          <  1:844556/35‑1
                          CCCCCACCGAACCAATGCCGCGGACAAAGTTAGCA          <  1:1149800/35‑1
                           CCCCACCGAACCAATGCCGCGGACAAAGTTAGCAA         <  1:19400643/35‑1
                            CCCCCCGAACCAATGCCGCGGACAAAGTTAGCAAA        <  1:8393756/35‑1
                            CCCACCGAACCAATGCCGCGGACAAAGTTAGCAAA        <  1:13817666/35‑1
                            CCCACCGAACCAATGCCGCGGACAAAGTTAGCAAA        <  1:13514938/35‑1
                            CCCACCGAACCAATGCCGCGGACAAAGTTAGCAAA        <  1:3542413/35‑1
                            CCCACCGAACCAATGCCGCGGACAAAGTTAGCAAA        <  1:2719871/35‑1
                            CCCACCGAACCAATGCCGCGGACAAAGTTAGCAAA        <  1:17265318/35‑1
                             CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAG       <  1:7404513/35‑1
                             CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAG       >  1:2491644/1‑35
                             CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAG       >  1:8767018/1‑35
                             CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAG       <  1:9129269/35‑1
                             CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAG       <  1:1097208/35‑1
                             CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAG       >  1:13491285/1‑35
                             CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAG       <  1:15614093/35‑1
                             CCACCGAACCAATGCCGCGGACAAAGTTAGCAAAG       <  1:16255440/35‑1
                              CACCGAACCAATGCCGCGGACAAAGTTAGCAAAtg      >  1:12494036/1‑33
                              CACCGAACCAATGCCGCGGACAAAGTTAGCAAAGG      <  1:8603849/35‑1
                              CACCGAACCAATGCCGCGGACAAAGTTAGCAAAGG      >  1:15689662/1‑35
                              CACCGAACCAATGCCGCGGACAAAGTTAGCAAAGG      >  1:11707909/1‑35
                              CACCGAACCAATGCCGCGGACAAAGTTAGCAAAGG      >  1:20113808/1‑35
                              CACCGAACCAATGCCGCGGACAAAGTTAGCAAAGG      >  1:18243061/1‑35
                               ACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGT     <  1:11247831/35‑1
                               ACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGT     <  1:16334344/35‑1
                               ACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGT     >  1:9188428/1‑35
                               ACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGT     >  1:12163694/1‑35
                               ACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGT     >  1:17985398/1‑35
                               ACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGT     >  1:16588386/1‑35
                                CCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTG    >  1:7679221/1‑35
                                CCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTG    >  1:5363517/1‑35
                                CCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTG    <  1:16583532/35‑1
                                CCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTG    >  1:14176664/1‑35
                                CCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTG    <  1:2241043/35‑1
                                CCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTG    >  1:2693049/1‑35
                                CCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTG    >  1:2903152/1‑35
                                 CGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGG   <  1:2691723/35‑1
                                 CGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGG   <  1:12239134/35‑1
                                 CGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGG   >  1:12731800/1‑35
                                 CGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGG   <  1:12864899/35‑1
                                 CGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGG   <  1:13323533/35‑1
                                 CGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGG   <  1:6511292/35‑1
                                 CGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGG   <  1:6028298/35‑1
                                 CGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGG   <  1:4083320/35‑1
                                  GAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGg  >  1:16055946/1‑34
                                  GAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGT  <  1:13149231/35‑1
                                  GAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGT  >  1:14657211/1‑35
                                  GAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGT  >  1:14797231/1‑35
                                  GAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGT  <  1:13875058/35‑1
                                  GAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGT  >  1:5601566/1‑35
                                  GAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGT  >  1:17092772/1‑35
                                                                     
CATGCCCATTTATGCCCGATGTTTCCCCCCCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/294237‑294203
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccgAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGT  >  REL606/836230‑836263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.