Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 547,700 | Δ2,651 bp | 100% | IS1‑mediated | [nmpC]–[ybcU] | [nmpC], ybcR, ybcS, ybcT, [ybcU] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 546953–547700 | 550350 | 2651–3398 | 55 [48] | [7] 94 | [insB‑6]–[ybcU] | [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, [ybcU] |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 547699 | NA (NA) | 59 (0.570) | 34/48 | NT | 93.7% | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 550351 = | 4 (0.040) | coding (12/294 nt) | ybcU | predicted lipoprotein |
GAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTA > REL606/546918‑546963 | gagaAACCGAAACCGGTAATGACTCCAACTTATTg < 1:8614514/35‑1 (MQ=255) gagaAACCGAAACCGGTAATGACTCCAACTTATTg > 1:7308418/1‑35 (MQ=255) gagaAACCGAAACCGGTAATGACTCCAACTTATTg < 1:16229757/35‑1 (MQ=255) gagaAACCGAAACCGGTAATGACTCCAACTTATTg < 1:12780664/35‑1 (MQ=255) gagaAACCGAAACCGGTAATGACTCCAACTTATTg < 1:19135881/35‑1 (MQ=255) gagaAACCGAAACCGGTAATGACTCCAACTTATTg > 1:3614739/1‑35 (MQ=255) gagaAACCGAAACCGGTAATGACTCCAACTTATTg > 1:14368138/1‑35 (MQ=255) agaAACCGAAACCGGTAATTACTCCAACTTATTGa > 1:18839010/1‑35 (MQ=255) agaAACCGAAACCGGTAATGACTCCAACTTATTGa > 1:8403788/1‑35 (MQ=255) agaAACCGAAACCGGTAATGACTCCAACTTATTGa < 1:16903870/35‑1 (MQ=255) agaAACCGAAACCGGTAATGACTCCAACTTATTGa > 1:5866492/1‑35 (MQ=255) agaAACCGAAACCGGTAATGACTCCAACTTATTGa > 1:1186195/1‑35 (MQ=255) agaAACCGAAACCGGTAATGACTCCAACTTATTGa < 1:5536993/35‑1 (MQ=255) agaAACCGAAACCGGTAATGACTCCAACTTATTGa < 1:12777638/35‑1 (MQ=255) gaaaccgaaaccTGTAATGACTCCAACTTATTGAt > 1:16850372/1‑35 (MQ=255) gaaaccgaaaccGGTAATGACTCCAACTTATTGAt < 1:20598048/35‑1 (MQ=255) aaaccgaaaccgGTAATGACTCCAACTTATTGATa > 1:3784976/1‑35 (MQ=255) aaaccgaaaccgGTAATGACTCCAACTTATTGATa < 1:5164714/35‑1 (MQ=255) aaaccgaaaccgGTAATGACTCCAACTTATTGATa > 1:18035627/1‑35 (MQ=255) aaaccgaaaccgGTAATGACTCCAACTTATTGATa > 1:7141568/1‑35 (MQ=255) aaaccgaaaccgGTAATGACTCCAACTTATTGATa > 1:7278149/1‑35 (MQ=255) aaaccgaaaccgGTAATGACTCCAACTTATTGATa < 1:9907751/35‑1 (MQ=255) aaaccgaaaccgGTAATGACTCCAACTTATTGATa > 1:16422188/1‑35 (MQ=255) aaaccgaaaccgGTAATGACTCCAACTTATTGATa < 1:10646496/35‑1 (MQ=255) aaccgaaaccgGTAATGACTCCAACTTATTGATAg > 1:13170113/1‑35 (MQ=255) aaccgaaaccgGTAATGACTCCAACTTATTGATAg < 1:15033653/35‑1 (MQ=255) aaccgaaaccgGTAATGACTCCAACTTATTGATAg > 1:19320979/1‑35 (MQ=255) accgaaaccgGTAATGACTCCAACTTATTGATAgt > 1:12144583/1‑35 (MQ=255) accgaaaccgGTAATGACTCCAACTTATTGATAgt > 1:10351298/1‑35 (MQ=255) accgaaaccgGTAATGACTCCAACTTATTGATAgt > 1:19487813/1‑35 (MQ=255) ccgaaaccgGTAATGACTCCAACTTATTGATAgtg > 1:6203846/1‑35 (MQ=255) ccgaaaccgGTAATGACTCCAACTTATTGATAgtg < 1:2444030/35‑1 (MQ=255) ccgaaaccgGTAATGACTCCAACTTATTGATAgtg > 1:13215653/1‑35 (MQ=255) ccgaaaccgGTAATGACTCCAACTTATTGATAgtg < 1:11627884/35‑1 (MQ=255) tctaaccgGTAATGACTCCAACTTATTGATAgtgt < 1:841545/32‑1 (MQ=255) cgaaaccgGTAATGACTCCAACTTATTGATAgtgt < 1:5972027/35‑1 (MQ=255) cgaaaccgGTAATGACTCCAACTTATTGATAgtgt > 1:17112911/1‑35 (MQ=255) cgaaaccgGTAATGACTCCAACTTATTGATAgcgt > 1:8796562/1‑35 (MQ=255) cgaaaccgGTAATGACTCCAAATTATTGATAgtgt < 1:10242962/35‑1 (MQ=255) gaaaccgGTAATGACTCCAACTTATTGATAGTGtt < 1:8485148/35‑1 (MQ=40) gaaaccgGTAATGACTCCAACTTATTGATAGTGtt < 1:10175165/35‑1 (MQ=40) gaaaccgGTAATGACTCCAACTTATTGATAGTGtt < 1:2799318/35‑1 (MQ=40) gaaaccgGTAATGACTCCAACTTATTGATAGTGtt < 1:18946105/35‑1 (MQ=40) aaaccgGTAATGACTCCAACTTATTGATAGTGttt < 1:5813792/35‑1 (MQ=38) aaaccgGTAATGACTCCAACTTATTGATAGTGttt < 1:11462927/35‑1 (MQ=38) aaaccgGTAATGACTCCAACTTATTGATAGTGttt < 1:19879364/35‑1 (MQ=38) aaaccgGTAATGACTCCAACTTATTGATAGTGttt > 1:14968354/1‑35 (MQ=38) aaccgGTAATGACTCCAACTTATTGATAGTGtttt < 1:5911184/35‑1 (MQ=35) aaccgGTAATGACTCCAACTTATTGATAGTGtttt < 1:19751573/35‑1 (MQ=35) aaccgGTAATGACTCAAACTTATTGATAGTGtttt < 1:16650162/35‑1 (MQ=255) accgGTAATGACTCCAACTTATTGATAGTGTTTTa > 1:12765254/1‑35 (MQ=32) accgGTAATGACTCCAACTTATTGATAGTGTTTTa < 1:13415412/35‑1 (MQ=32) accgGTAATGACTCCAACTTATTGATAGTGTTTTa > 1:18627561/1‑35 (MQ=32) accgGTAATGACTCCAACTTATTGATAGTGTTTTa > 1:15280572/1‑35 (MQ=32) accgGTAATGACTCCAACTTATTGATAGTGGTTTa > 1:11444538/1‑35 (MQ=12) | GAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTA > REL606/546918‑546963 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |