New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2533712 = | 95 (0.920) | 9 (0.130) | 3/32 | NT | 14.4% | coding (987/2007 nt) | hyfR | DNA‑binding transcriptional activator, formate sensing |
? | REL606 | 3554407 = | 44 (0.640) | coding (321/384 nt) | yhhH | hypothetical protein |
CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2533753‑2533712 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggtggGGTTTTTATTATAGAAATAGGCAAAAATGATGGG > REL606/3554407‑3554440 CCGATGCCCAGATTCGAAAGGATCTGCTCGCTAAG > 1:13281486/1‑35 CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTTAG > 1:14028252/1‑35 CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAG > 1:10202100/1‑35 CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAG > 1:13773425/1‑35 CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAG < 1:12068967/35‑1 CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAG > 1:9388132/1‑35 CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAG < 1:2904889/35‑1 CGATGCCCAGATTCGAAAGGAGCTGCTCGCTCAGC > 1:9679828/1‑35 CGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGC > 1:6992468/1‑35 CGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGC < 1:18205025/35‑1 CGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGC > 1:2869158/1‑35 GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCa > 1:9745653/1‑34 GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT > 1:16126155/1‑35 GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT > 1:3180664/1‑35 GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT < 1:10826420/35‑1 GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT < 1:3434579/35‑1 GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT > 1:13113396/1‑35 GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT > 1:4357114/1‑35 GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT > 1:5434142/1‑35 GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT < 1:20353823/35‑1 GATACCCAGATTCGAAAGGAGCTGCTCGCTAAGCT > 1:3598855/1‑35 ATGCCCAGATTCGAAAGGAGCTGCTCGCTCAGCTG > 1:5897190/1‑35 ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG > 1:17845023/1‑35 ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG > 1:1530629/1‑35 ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG > 1:14703749/1‑35 ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG < 1:5610879/35‑1 ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG > 1:10476238/1‑35 ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG < 1:6696510/35‑1 ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG > 1:8212359/1‑35 ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG > 1:8467307/1‑35 TGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGG > 1:17582389/1‑35 TGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGG < 1:1719265/35‑1 TGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGG > 1:14185547/1‑35 GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT > 1:20124540/1‑35 GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT > 1:4029885/1‑35 GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT > 1:19649835/1‑35 GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT < 1:7225029/35‑1 GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT > 1:14951421/1‑35 GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT > 1:11586503/1‑35 GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT > 1:8078956/1‑35 GCCCAGATTCGAAAGGAGCTGCTCGCCAAGCTGGT > 1:1231513/1‑35 CCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGgg > 1:10071285/1‑33 CCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTG < 1:10688581/35‑1 CCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTG < 1:13273870/35‑1 CCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTG < 1:16836808/35‑1 CCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGG < 1:12814568/35‑1 CCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGG < 1:9060249/35‑1 CCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGG > 1:14328098/1‑35 CCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGG < 1:2492317/35‑1 CAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGGG > 1:19046285/1‑35 CAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGGG > 1:15364957/1‑35 CAGATTCGAAAGGAGCTGCTCGCTAAGCTGGGGGG > 1:8870901/1‑35 ATTCGAAAGGAGCTGCTCGCTAAGCTGGTGGGTTT > 1:8031583/1‑35 ATTCGAAAGGAGCTGCTCGCTAAGCTGGTGGGGTT > 1:2336992/1‑35 TTCGAAAGGAGCTGCTCGCTAAGCTGGTGGGTTTT > 1:13794622/1‑35 TTCGAAAGGAGCTGCTCGCTAAGCTGGTGGGGTTT > 1:9920843/1‑35 TTCGAAAGGAGCTGCTCGCTAAGCTGGTGGGGTTT > 1:10820514/1‑35 TCGAAAGGAGCTGCTCGCTAAGCTGGTGGGGTTTT > 1:848973/1‑35 CGAAAGGAGCTGCTCGCTAAGCTGGTGGGTTTTTT > 1:10521608/1‑35 CGAAAGGAGCTGCTCGCTAAGCTGGTGGGGTTTTT > 1:6520106/1‑35 CGAAAGGAGCTGCTCGCTAAGCTGGTGGGGTTTTT > 1:18092958/1‑35 GAAAGGAGCTGCTCGCTAAGCTGGTGGGTTTTTTt > 1:18930214/1‑34 GAAAGGAGCTGCTCGCTAAGCTGGTGGGTTTTTTt > 1:9650119/1‑34 AAAGGAGCTGCTCGCTAAGCTGGTGGGGTTTTTtt > 1:1155497/1‑33 AAGGAGCTGCTCGCTAAGCTGGTGGGGTTTTTgct > 1:9151/1‑32 AAGGAGCTGCTCGCTAAGCTGGTGGGGTTTTTTTT > 1:4106208/1‑35 GCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAA > 1:13288128/1‑35 GCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAA < 1:11990589/35‑1 GCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAA > 1:365031/1‑35 GCTGGTGGGGTTCTTATTATAGAAATAGGCAAAAA < 1:19160119/35‑1 CTGGTGGGGTTTTTATTATAGAAATAGGCAAAAAT < 1:18004504/35‑1 CTGGTGGGGTTTTTATTATAGAAATAGGCAAAAAT > 1:11963447/1‑35 CTGGTGGGGTTTTTATTATAGAAATAGGCAAAAAT < 1:1953386/35‑1 TGGTGGGGTTTTTATTATAGAAATAGGCAAAAATG > 1:1875117/1‑35 TGGTGGGGTTTTTATTATAGAAATAGGCAAAAATG > 1:3434711/1‑35 TGGTGGGGTTTTTATTATAGAAATAGGCAAAAATG > 1:13597918/1‑35 GGTGGGGTTTTTATTATAGAAATAGGCAAAAATGA > 1:1086840/1‑35 GGTGGGGTTTTTATTATAGAAATAGGCAAAAATGA < 1:7692554/35‑1 GGTGGGGTTTTTATTATAGAAATAGGCAAAAATGA > 1:17452073/1‑35 GGTGGGGTTTTTATTATAGAAATAGGCAAAAATGA < 1:19331659/35‑1 GTGGGGTTTTTATTATAGAAATAGGCAAAAATGAT < 1:16157264/35‑1 GTGGGGTTTTTATTATAGAAATAGGCAAAAATGAT < 1:19106268/35‑1 GTGGGGTTTTTATTATAGAAATAGGCAAAAATGAT < 1:19839807/35‑1 TGGGGTTTTTATTATAGAAATAGGCAAAAATGATG < 1:12616153/35‑1 TGGGGTTTTTATTATAGAAATAGGCAAAAATGATG < 1:4943237/35‑1 GGGGTTTTTATTATAGAAATAGGCAAAAATGATGG < 1:9004834/35‑1 GGGGTTTTTATTATAGAAATAGGCAAAAATGATGG > 1:16992404/1‑35 GGGGTTTTTATTATAGAAATAGGCAAAAATGATGG < 1:9250186/35‑1 GGGTTTTTATTATAGAAATAGGCAAAAATGATGtg > 1:864000/1‑33 GGGTTTTTATTATAGAAATAGGCAAAAATGATGGG > 1:14323314/1‑35 CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2533753‑2533712 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggtggGGTTTTTATTATAGAAATAGGCAAAAATGATGGG > REL606/3554407‑3554440 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |