Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,460 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3893577–3894996 | 3901456 | 6461–7880 | 51 [46] | [0] 180 | insJ‑5–[yieO] | insJ‑5, insK‑5, rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3652533 | NA (NA) | 95 (0.960) | 38/46 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901457 = | 0 (0.000) | coding (963/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
Only 100 of 180 total aligned reads displayed.
CCACTAATGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAAC > REL606/3901423‑3901491 | gtgtttaactgtccaactttttggggtcagtacag < 1:12785453‑M2/1‑1 (MQ=255) gtgtttaactgtccaactttttggggtcagtacag > 1:13023974‑M2/35‑35 (MQ=255) gtgtttaactgtccaactttttggggtcagtacag < 1:13679283‑M2/1‑1 (MQ=255) gtgtttaactgtccaactttttggggtcagtacag > 1:16530983‑M2/35‑35 (MQ=255) gtgtttaactgtccaactttttggggtcagtacag > 1:4031172‑M2/35‑35 (MQ=255) gtgtttaactgtccaactttttggggtcagtacag < 1:18412951‑M2/1‑1 (MQ=255) gtgtttaactgtccaactttttggggtcagtacag < 1:2431657‑M2/1‑1 (MQ=255) gtgtttaactgtccaactttttggggtcagtacag < 1:1992758‑M2/1‑1 (MQ=255) gtgtttaactgtccaactttttggggtcagtacag < 1:9553650‑M2/1‑1 (MQ=255) gtgtttaactgtccaactttttggggtcagtacag > 1:9849515‑M2/35‑35 (MQ=255) tgtttaactttccaactttttggggtcagtacaGa > 1:109099‑M2/34‑35 (MQ=255) tgtttaactgtccaactttttggggtcagtacagc > 1:3246610‑M2/34‑34 (MQ=255) tgtttaactgtccaactttttggggtcagtacagc > 1:10690846‑M2/34‑34 (MQ=255) tgtttaactgtccaactttttggggtcagtacagc > 1:15708287‑M2/34‑34 (MQ=255) tgtttaactgtccaactttttggggtcagtacagc > 1:13082010‑M2/34‑34 (MQ=255) tgtttaactgtccaactttttggggtcagtacaGa > 1:18149228‑M2/34‑35 (MQ=255) tgtttaactgtccaactttttggggtcagtacaGa > 1:12510031‑M2/34‑35 (MQ=255) gtttaactgtccaactttttggggtcagtacagag < 1:20524651‑M2/3‑2 (MQ=255) gtttaactgtccaactttttggggtcagtacaGAc < 1:11202547‑M2/3‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaGAc < 1:2301884‑M2/3‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaGAc < 1:5528796‑M2/3‑1 (MQ=255) tttaactgtccaactttttggggtcagtacaggat > 1:5327745‑M2/32‑32 (MQ=255) tttaactgtccaactttttggggtcagtacagagt > 1:185481‑M2/32‑33 (MQ=255) tttaactgtccaactttttggggtcagtacagagt > 1:19969590‑M2/32‑33 (MQ=255) tttaactgtccaactttttggggtcagtacagagt > 1:546002‑M2/32‑33 (MQ=255) tttaactgtccaactttttggggtcagtacagagt < 1:18724318‑M2/4‑3 (MQ=255) tttaactgtccaactttttggggtcagtacagagt > 1:10829043‑M2/32‑33 (MQ=255) tttaactgtccaactttttggggtcagtacagagt < 1:665986‑M2/4‑3 (MQ=255) tttaactgtccaactttttggggtcagtacagagt > 1:19491014‑M2/32‑33 (MQ=255) tttaactgtccaactttttggggtcagtacaGCCt < 1:17498861‑M2/4‑1 (MQ=255) ttaactgtccaactttttggggtcagtacagagta > 1:16682999‑M2/31‑32 (MQ=255) ttaactgtccaactttttggggtcagtacaGACtt < 1:18240773‑M2/5‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaGACtt < 1:3426037‑M2/5‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaGACtt > 1:8542630‑M2/31‑35 (MQ=255) taactgtccaactttttggggtcagtacaGACTTg < 1:10609841‑M2/6‑1 (MQ=255) aactgtccaactttttggggtcagtacaGACTTgg < 1:11435746‑M2/7‑1 (MQ=255) actgtccaactttttggggtcagtacaGACTTggn < 1:16678628‑M2/8‑1 (MQ=255) actgtccaactttttggggtcagtacaGACTTggg < 1:9132159‑M2/8‑1 (MQ=255) actgtccaactttttggggtcagtacaGACTTggg > 1:743393‑M2/28‑35 (MQ=255) actgtccaactttttggggtcagtacaGACTTggg > 1:11350951‑M2/28‑35 (MQ=255) actgtccaactttttcgggtcagtacaGACTTggg > 1:612560‑M2/28‑35 (MQ=255) tgtccaactttttggggtcagtacaGACTTGGGTa < 1:11658601‑M2/10‑1 (MQ=255) tgtccaactttttggggtcagtacaGACTTGGGTa < 1:20302536‑M2/10‑1 (MQ=255) gtccaactttttggggtcagtacaGACTTGGGTaa > 1:1464204‑M2/25‑35 (MQ=255) gtccaactttttggggtcagtacaGACTTGGGTaa < 1:20064717‑M2/11‑1 (MQ=255) tccaactttttggggtcagtacaGACTTGGGTAAc > 1:19386997‑M2/24‑35 (MQ=255) tccaactttttggggtcagtacaGACTTGGGTAAc > 1:1016137‑M2/24‑35 (MQ=255) tccaactttttggggtcagtacaGACTTGGGTAAc < 1:3679766‑M2/12‑1 (MQ=255) tccaactttttggggtcagtacaGACTTGGGTAAc > 1:16213340‑M2/24‑35 (MQ=255) caactttttggggtcagtacaGACTTGGGTAACCa > 1:15599971‑M2/22‑35 (MQ=255) aactttttggggtcagtacaGACTTGGGTAACCAt < 1:8610337‑M2/15‑1 (MQ=255) aactttttggggtcagtacaGACTTGGGTAACCAt < 1:14988109‑M2/15‑1 (MQ=255) aactttttggggtcagtacaGACTTGGGTAACCAt > 1:2853941‑M2/21‑35 (MQ=255) aactttttggggtcagtacaGACTTGGGTAACCAt > 1:17581139‑M2/21‑35 (MQ=255) actttttggggtcagtacaGACTTGGGTAACCATc < 1:15050923‑M2/16‑1 (MQ=255) actttttggggtcagtacaGACTTGGGTAACCATc < 1:4614475‑M2/16‑1 (MQ=255) actttttggggtcagtacaGACTTGGGTAACCATc < 1:9025197‑M2/16‑1 (MQ=255) ctttttggggtcagtacaGACTTGGGTAACCATCg < 1:11501802‑M2/17‑1 (MQ=255) ctttttggggtcagtacaGACTTGGGTAACCATCg < 1:13174939‑M2/17‑1 (MQ=255) ctttttggggtcagtacaGACTTGGGTAACCATCg < 1:7598149‑M2/17‑1 (MQ=255) tttttggggtcagtacaGACTTGGGTAACCATCGa > 1:14810088‑M2/18‑35 (MQ=255) tttttggggtcagtacaGACTTGGGTAACCATCGa > 1:14005820‑M2/18‑35 (MQ=255) tttttggggtcagtacaGACTTGGGTAACCATCGa < 1:13473251‑M2/18‑1 (MQ=255) ttttggggtcagtacaGACTTGGGTAACCATCGAt < 1:704330‑M2/19‑1 (MQ=255) ttttggggtcagtacaGACTTGGGTAACCATCGAt > 1:11876497‑M2/17‑35 (MQ=255) ttttggggtcagtacaGACTTGGGTAACCATCGAt < 1:18509776‑M2/19‑1 (MQ=255) tttgggggtcagtacaGACTTGGGTAACCATCGAt < 1:11134821‑M2/19‑1 (MQ=255) tttggggtcagtacaGACTTGGGTAACCATCGAtt > 1:9456877‑M2/16‑35 (MQ=255) ttggggtcagtacaGACTTGGGTAACCATCGAttt < 1:14410248‑M2/21‑1 (MQ=255) ttggggtcagtacaGACTTGGGTAACCATCGAttt < 1:16510729‑M2/21‑1 (MQ=255) tggggtcagtacaGACTTGGGTAACCATCGAtttt > 1:10055194‑M2/14‑35 (MQ=255) tggggtcagtacaGACTTGGGTAACCATCGAtttt < 1:19239536‑M2/22‑1 (MQ=255) ggggtcagtacaGACTTGGGTAACCATCGATTTTg < 1:12142496‑M2/23‑1 (MQ=255) ggggtcagtacaGACTTGGGTAACCATCGATTTTg < 1:6854847‑M2/23‑1 (MQ=255) ggggtcagtacaGACTTGGGTAACCATCGATTTTg < 1:14536336‑M2/23‑1 (MQ=255) gggtcagtacaGACTTGGGTAACCATCGATTTTGc < 1:13885134‑M2/24‑1 (MQ=255) gggtcagtacaGACTTGGGTAACCATCGATTTTGc < 1:9132018‑M2/24‑1 (MQ=255) ggtcagtacaGACTTGGGTAACCATCGATTTTGCa > 1:16075524‑M2/11‑35 (MQ=255) ggtcagtacaGACTTGGGTAACCATCGATTTTGCa > 1:2696436‑M2/11‑35 (MQ=255) gtcagtacaGACTTGGGTAACCATCGATTTTGCaa > 1:4345834‑M2/10‑35 (MQ=255) gtcagtacaGACTTGGGTAACCATCGATTTTGCaa < 1:19316722‑M2/26‑1 (MQ=255) gtcagtacaGACTTGGGTAACCATCGATTTTGCaa > 1:6523920‑M2/10‑35 (MQ=255) gtcagtacaGACTTGGGTAACCATCGATTTTGCaa > 1:6927628‑M2/10‑35 (MQ=255) tcagtacaGACTTGGGTAACCATCGATTTTGCaat > 1:12329930‑M2/9‑35 (MQ=255) cagtacaGACTTGTGTAACCATCGATTTTGCaata > 1:2907459‑M2/8‑35 (MQ=255) cagtacaGACTTGGGTAACCATCGATTTTGCaata > 1:7945956‑M2/8‑35 (MQ=255) agtacaGACTTGGGTAACCATCGATTTTGCaataa > 1:7896792‑M2/7‑35 (MQ=255) agtacaGACTTGGGTAACCATCGATTTTGCaataa > 1:17099102‑M2/7‑35 (MQ=255) agtacaGACTTGGGTAACCATCGATTTTGCaataa > 1:14591369‑M2/7‑35 (MQ=255) agtacaGACTTGGGTAACCATCGATTTTGCaataa < 1:2009210‑M2/29‑1 (MQ=255) gtacaGACTTGGGTAACCATAGATTTTGCaataat < 1:12681162‑M2/30‑1 (MQ=255) tacaGACTTGGGTAACCATTGATTTTGCAATAATg > 1:14182493‑M2/5‑35 (MQ=255) acaGACTTGGGTAACCATCGATTTTGCAATAATgg > 1:236424‑M2/4‑35 (MQ=255) caGACTTGGGTAACCATCGATTTTGCAATAATGGa < 1:16910189‑M2/33‑1 (MQ=255) gACTTGGGTAACCATCGATTTTGCAATAATGGAAc < 1:8190224/35‑1 (MQ=255) gACTTGGGTAACCATCGATTTTGCAATAATGGAAc < 1:781477/35‑1 (MQ=255) gACTTGGGTAACCATCGATTTTGCAATAATGGAAc < 1:7665148/35‑1 (MQ=255) gACTTGGGTAACCATCGATTTTGCAATAATGGAAc > 1:19725458/1‑35 (MQ=255) gACTTGGGTAACCATCGATTTTGCAATAATGGAAc < 1:17652753/35‑1 (MQ=255) gACTTGGGTAACCATCGATTTTGCAATAATGGAAc < 1:10473946/35‑1 (MQ=255) | CCACTAATGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAAC > REL606/3901423‑3901491 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |