New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2556110 =67 (0.650)14 (0.170) 5/38 NT 14.7% coding (1060/1371 nt) xseA exodeoxyribonuclease VII large subunit
?REL606 3882315 = 110 (1.350)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

Only 100 of 412 total aligned reads displayed.

ATGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTACG  >  REL606/3882281‑3882348
                                  |                                 
gtcaagtacatcgtaacggaaggtggtGTGGCTgg                                   >  1:1226066‑M2/28‑35 (MQ=255)
gtcaagtacatcgtaacggaaggtggtGGGGCTgg                                   >  1:10602717‑M2/28‑35 (MQ=255)
gtaaggcagtttgaagttgcacgccaaatggctgg                                   >  1:9618957‑M2/35‑35 (MQ=255)
gtaaggcagtttgaagttgcacgccaaatggctgg                                   >  1:18351706‑M2/35‑35 (MQ=255)
gctttctatgctgccgaacgccccagcatggctgg                                   >  1:13255920‑M2/35‑35 (MQ=255)
gatcatcggtatgatcggctttggcctggggctgg                                   >  1:10957634‑M2/35‑35 (MQ=255)
gaatgcgcgtttgcgcgcgatgaatcttcggctgg                                   >  1:4590025‑M2/35‑35 (MQ=255)
aTGTAGTCAATATTGATTTTCCAGAAGGTGGCTgg                                   >  1:20502316/1‑35 (MQ=37)
 tactggccggtgctgctgggcgcggggtggctggg                                  >  1:10257085‑M2/34‑35 (MQ=255)
 tactggccggtgctgctgggcgcggggtggctggg                                  >  1:5829660‑M2/34‑35 (MQ=255)
 cgcactcagctcaaaagcctcggtttgtggttggg                                  >  1:8377829‑M2/34‑35 (MQ=255)
 cgcactcagctcaaaagcctcggtttgtggttggg                                  >  1:19684919‑M2/34‑35 (MQ=255)
  cctgctcctgcatggactccggtaactggctgggg                                 >  1:5647560‑M2/33‑35 (MQ=255)
  caagtacatcgtaacggaaggtggtGTGGCtgggc                                 >  1:9159203‑M2/26‑34 (MQ=255)
  aaggcagtttgaagttgcacgccaaatggctgggg                                 >  1:3045813‑M2/33‑35 (MQ=255)
   tctttatttagcctggccctgatgctggctggggg                                >  1:2926373‑M2/32‑35 (MQ=255)
   gAGTCAATATTGATTGTCCAGAAGGTGGCTggggg                                >  1:7007562/1‑35 (MQ=255)
   cactcagctcaaaagcctcggtttgtggttggggg                                >  1:20263003‑M2/32‑35 (MQ=255)
    tggccggtgctgctgggcgcggagtggctgggggg                               >  1:2498400‑M2/31‑35 (MQ=255)
    tggccggtgctgctgggcgcggagtggctgggggg                               >  1:14259775‑M2/31‑35 (MQ=255)
    actcagctcaaaagcctcggtttgtggttgggggt                               >  1:17746025‑M2/31‑34 (MQ=255)
    actcagctcaaaagcctcggtttgtggttgggggt                               >  1:9540653‑M2/31‑34 (MQ=255)
    acgcggcgtttctccggtatcggtggggggtgggg                               >  1:4975451‑M2/30‑35 (MQ=255)
    aGTCAATATTGATTGTCCAGAAGGTGGCTgggggg                               >  1:9408588/1‑35 (MQ=255)
    aGTCAATATTGATTGTCCAGAAGGTGGCTgggggg                               <  1:6054748/35‑1 (MQ=255)
    aGTCAATATTGATTGTCCAGAAGGTGGCTgggggg                               >  1:20128186/1‑35 (MQ=255)
     tttatttagcctggccctgatgctggctggggggg                              >  1:8719839‑M2/30‑34 (MQ=255)
     gcagtttgaagttgcacgccaaatggctggggggg                              >  1:8013564‑M2/30‑34 (MQ=255)
     ctatgctgccgaacgccccagcatggctgGGGGGt                              >  1:1728966‑M2/30‑35 (MQ=255)
     cgcggcgtttctccggtatcggtgggggggggggg                              >  1:19308993‑M2/29‑34 (MQ=255)
     cgcggcgtttctccggtatcggtgggggGGGGGGt                              >  1:15205155‑M2/29‑35 (MQ=255)
      ttatttagcctggccctgatgctggctgggggggg                             >  1:11191453‑M2/29‑33 (MQ=255)
      tatgctgccgaacgccccagcatggctgGGGGTtt                             >  1:18111616‑M2/29‑35 (MQ=255)
      gcgtttgcgcgtgatgaatcttcggctgGGGGGtt                             >  1:19934631‑M2/29‑35 (MQ=255)
      gcggcgtttctccggtatcggtgggggGGGGGGtt                             >  1:5344783‑M2/28‑35 (MQ=255)
      gcggcgtttctccggtatcggtgggggGGGGGGtt                             >  1:18890271‑M2/28‑35 (MQ=255)
      gccggtgctgctgggcgcggagtggctgGGGGTtt                             >  1:11936483‑M2/29‑35 (MQ=255)
       tatttagcctggccctgatgctggctggggggggg                            >  1:1002430‑M2/28‑32 (MQ=255)
       ggtatgatcggctttggcctgtggctgGGGGTttt                            >  1:13775473‑M2/28‑35 (MQ=255)
       cggcgtttctccggtatcggtgggggGGGGGGttt                            >  1:16810126‑M2/27‑35 (MQ=255)
       ccggtgctgctgggcgcggagtggctgGGGGGttt                            >  1:16493296‑M2/28‑35 (MQ=255)
       cagctcaaaagcctcggtttgtggttgGGGGGttt                            >  1:17624010‑M2/28‑35 (MQ=255)
       cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt                            >  1:16192227/1‑35 (MQ=255)
       cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt                            <  1:4240004/35‑1 (MQ=255)
       atgctgccgaacgccccagcatggctgGGGGTttt                            >  1:11357587‑M2/28‑35 (MQ=255)
        tgctgccgaacgccccagcatggctgGGGGgtttc                           >  1:15954982‑M2/27‑34 (MQ=255)
        gtatgatcggctttggcctgtggctgGGGGGtttt                           >  1:6758062‑M2/27‑35 (MQ=255)
        gtatgatcggctttggcctgtggctgGGGGGtttt                           >  1:10356438‑M2/27‑35 (MQ=255)
        cctgcatggactccggtaactggctgGGGggttgt                           >  1:8148853‑M2/27‑33 (MQ=255)
        atttagcctggccctgatgctggctgGGGCgtttg                           >  1:6262844‑M2/27‑34 (MQ=255)
        aaTATTGATTGTCCAGAAGGTGGCTGGGGGGtttt                           >  1:1271748/1‑35 (MQ=255)
         tttgaagttgcacgccaaatggctgGGGGggtttt                          >  1:2631182‑M2/26‑34 (MQ=255)
         tatgatcggctttggcctgtggctgGGGGgttttt                          >  1:14595613‑M2/26‑34 (MQ=255)
         ctgcatggactccggtaactggctgGGGGGTTGtg                          >  1:19055405‑M2/26‑35 (MQ=255)
         atcgtaacggaaggtggtGTGGCTGGGGGtttttc                          >  1:15450486‑M2/19‑34 (MQ=255)
         atcgtaacggaaggtggtGTGGCTGGGGGgttttt                          >  1:11621332‑M2/19‑34 (MQ=255)
         atatTGATTGTCCAGAAGGTGGCTGGGGGGttttt                          >  1:2785224/1‑34 (MQ=255)
         atatTGATTGTCCAGAAGGTGGCTGGGGGGTTTtg                          >  1:8997180/1‑35 (MQ=255)
          ttgcgcgcgatgaatcttcggctgGGGggtttttt                         >  1:15486358‑M2/25‑33 (MQ=255)
          ttgcgcgcgatgaatcttcggctgGGGGGTTTtgt                         >  1:10147043‑M2/25‑35 (MQ=255)
          tcgtaacggaaggtggtGTGGCTGGGgggtttcct                         >  1:14786191‑M2/18‑32 (MQ=255)
           tgatcggctttggcctgtggctgGGgggttttttt                        >  1:19733766‑M2/24‑32 (MQ=255)
           tgaagttgcacgccaaatggctgGGGGGGTTtgtg                        >  1:3808703‑M2/24‑35 (MQ=255)
           cgtaacggaaggtggtGTGGCTGGGgggttttctc                        >  1:1875325‑M2/17‑32 (MQ=255)
           cgtaacggaaggtggtGTGGCTGGGGGGTTTtctg                        >  1:3559942‑M2/17‑35 (MQ=255)
           attgattgTCCAGAAGGTGGCTGGGGGGTTTtttg                        >  1:6384691/1‑35 (MQ=255)
           attgattgTCCAGAAGGTGGCTGGGGGGTTTtgtg                        <  1:8537398/35‑1 (MQ=255)
           attgattgTCCAGAAGGTGGCTGGGGGGTTTtgtg                        >  1:14734834/1‑35 (MQ=255)
           attgattgTCCAGAAGGGGGCTGGGGGGTTTtgtg                        >  1:5866281/1‑35 (MQ=255)
            tttctccggtatcggtgggggGGGGGGTTTTGTgg                       >  1:3069534‑M2/22‑35 (MQ=255)
            ttgattgTCCAGAAGGTGGCTGGGGGGTTTTGTgg                       <  1:10862982/35‑1 (MQ=255)
            gtaacggaaggtggtGTGGCTGGGGGGTTTTCTgg                       >  1:12876851‑M2/16‑35 (MQ=255)
            caaaagcctcggtttgtggttgGGGGGTTttttgt                       >  1:6605611‑M2/23‑34 (MQ=255)
            caaaagcctcggtttgtggttgGGGGGTTTTCTgg                       >  1:14892967‑M2/23‑35 (MQ=255)
             tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa                      >  1:3739294/1‑35 (MQ=255)
              gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt                     >  1:5064562/1‑35 (MQ=255)
              gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt                     >  1:14999282/1‑35 (MQ=255)
               attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc                    <  1:5142531/35‑1 (MQ=255)
               attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc                    <  1:1912301/35‑1 (MQ=255)
               attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc                    >  1:4695872/1‑35 (MQ=255)
                  gTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccac                 >  1:11520548/1‑35 (MQ=255)
                  gTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccac                 >  1:9329000/1‑35 (MQ=255)
                   tCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc                <  1:2215528/35‑1 (MQ=255)
                   tCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc                >  1:15874337/1‑35 (MQ=255)
                    ccAGAAGGTGGCTGGGGGGTTTTGTGGATccacca               >  1:15653859/1‑35 (MQ=255)
                     cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg              >  1:10914243/1‑35 (MQ=255)
                      aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc             >  1:4032998/1‑35 (MQ=255)
                      aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc             <  1:7722681/35‑1 (MQ=255)
                       gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg            >  1:8268116/1‑35 (MQ=255)
                       gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg            >  1:18240105/1‑35 (MQ=255)
                        aaGGTGGCTTGGGGGTTTTGTGGATCCACCAGCgg           >  1:1173011/1‑34 (MQ=255)
                         aGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgag          >  1:3259754/1‑35 (MQ=255)
                         aGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgag          <  1:17483092/35‑1 (MQ=255)
                         aGGTGGCTGGGGGGTTTTGTGGATCCACCAGAgag          >  1:15085730/1‑35 (MQ=255)
                          ggTGGCTGGGGGGTTTTTTGGATCCACCAGCgaga         >  1:7146958/1‑35 (MQ=255)
                             ggctgGGGGGTTTTGTGGATCCACCAGCGAGAATg      <  1:17195532‑M2/30‑1 (MQ=255)
                               ctgGGGGGTTTTGTGGATCCATCAGCGAGAATGTa    >  1:13145248‑M2/4‑35 (MQ=255)
                               ctgGGGGGTTTTGTGGATCCACCAGCGAGAATGTa    <  1:18519260‑M2/32‑1 (MQ=255)
                                 gGGGGGTTTTGTGGATCCACCAGCGAGAATGTACg  >  1:7589795‑M2/2‑35 (MQ=255)
                                 gGGGGGTTTTGTGGATCCACCAGCGAGAATGTACg  <  1:546117‑M2/34‑1 (MQ=255)
                                  |                                 
ATGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTACG  >  REL606/3882281‑3882348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.