New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1731442 =72 (0.700)7 (0.070) 3/46 NT 11.5% coding (303/627 nt) ydhY predicted 4Fe‑4S ferridoxin‑type protein
?REL606 3480446 = 39 (0.400)coding (628/2394 nt) malP maltodextrin phosphorylase

CACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAGATCCCACGCTTGACCGGTA  >  REL606/3480412‑3480480
                                  |                                  
cccaGACGCGGCGGCTGCGCCACGCCATTACGATa                                    <  1:12262196/33‑1 (MQ=37)
cccaGACCCAGCGGCTGCGCCACGCCATTACGATa                                    <  1:4019980/33‑1 (MQ=37)
 ccaGACGCAGCGGCTGCGCCACGCCATTACGATAg                                   <  1:12553370/34‑1 (MQ=255)
  caGACGCAGCGGCTGCGCCACGCCATTACGATAGc                                  <  1:15615076/35‑1 (MQ=255)
            ggCTGCGCCACGCCATTACGATAGCCGACAACgtg                        >  1:13144805/1‑33 (MQ=255)
            ggCTGCGCCACGCCATTACGATAGCCGACAACggg                        >  1:15232596/1‑35 (MQ=255)
            ggCTGCGCCACGCCATTACGATAGCCGACAACggg                        >  1:2161436/1‑35 (MQ=255)
            ggCTGCGCCACGCCATTACGATAGCCGACAACggg                        >  1:19798679/1‑35 (MQ=255)
             gCTGCGCCACGCCATTACGATAGCCGACAACgggg                       >  1:17990444/1‑35 (MQ=255)
             gCTGCGCCACGCCATTACGATAGCCGACAACgggg                       >  1:20355869/1‑35 (MQ=255)
             gCTGCGCCACGCCATTACGATAGCCGACAACgggg                       >  1:3718016/1‑35 (MQ=255)
             gCTGCGCCACGCCATTACGATAGCCGACAACgggg                       >  1:9536601/1‑35 (MQ=255)
              cTGCGCCACGCCATTACGATAGCCGACAACGGGga                      >  1:13023832/1‑35 (MQ=255)
              cTGCGCCACGCCATTACGATAGCCGACAACGGGga                      >  1:17366199/1‑35 (MQ=255)
              cTGCGCCACGCCATTACGATAGCCGACAACGGGga                      >  1:10791588/1‑35 (MQ=255)
               tGCGCCACGCCATTACGATAGCCGACAACGGGgag                     >  1:12092187/1‑35 (MQ=255)
               tGCGCCACGCCATTACGATAGCCGACAACGGGgag                     >  1:7128522/1‑35 (MQ=255)
               tGCGCCACGCCATTACGATAGCCGACAACGGGgag                     >  1:11522400/1‑35 (MQ=255)
                gcgcCACGCCATTACGATAGCCGACAACGGGgaga                    >  1:17988722/1‑35 (MQ=255)
                 cgccacgccaTTACGATAGCCGACAACGGGGAGAt                   >  1:10893806/1‑35 (MQ=255)
                 cgccacgccaTTACGATAGCCGACAACGGGGAGAt                   >  1:18411932/1‑35 (MQ=255)
                  gccacgccaTTACGATAGCCGACAACGGGGAGATc                  >  1:18558472/1‑35 (MQ=255)
                   ccacgccaTTACGATGGCCGACAACGGGGAGATcc                 >  1:10303735/1‑35 (MQ=255)
                    cacgccaTTACGATAGCCGACAACGTGGAGATccc                >  1:12913683/1‑35 (MQ=255)
                    cacgccaTTACGATAGCCGACAACGGGGAGATccc                >  1:18787844/1‑35 (MQ=255)
                    cacgccaTTACGATAGCCGACAACGGGGAGATccc                >  1:19485131/1‑35 (MQ=255)
                    cacgccaTTACGATAGCCGACAACGGGGAGATccc                >  1:19664841/1‑35 (MQ=255)
                    cacgccaTTACGATAGCCGACAACGGGGAGATccc                >  1:4747387/1‑35 (MQ=255)
                    cacgccaTTACGATAGCCGACAACGGGGAGATccc                >  1:1326635/1‑35 (MQ=255)
                    cacccctTTACTTTAGCCGACAACGGGGAGATccc                <  1:10852835/35‑1 (MQ=19)
                     actccaTTACGATAGCCGACAACGGGGAGATCCCa               >  1:12833755/4‑35 (MQ=255)
                     acgccaTTACGTTAGCCGACAACGGGGAGATCCCa               <  1:9825118/35‑1 (MQ=255)
                     acgccaTTACGATAGCCGACAACGGGGAGATCCCa               >  1:17250210/1‑35 (MQ=255)
                      cgccaTTACGATAGCCGACAACGGGGAGATCCCAc              >  1:916893/1‑35 (MQ=255)
                        ccatttctttAGCCGACAACGGGGAGATCCCACGc            <  1:189624‑M2/25‑1 (MQ=255)
                        ccaTTACGATAGCCGACAACGGGGAGATCCCACGc            >  1:11380754/1‑35 (MQ=255)
                         tatttctttAGCCGACAACGGGGAGATCCCACGCt           <  1:2379837‑M2/26‑1 (MQ=255)
                         cattactttAGCCGACAACGGGGAGATCCCACGCt           <  1:8399918‑M2/26‑1 (MQ=255)
                         caTTATGTTAGCCGACAACGGGGAGATCCCACGCt           <  1:4748385/35‑1 (MQ=37)
                         caTTACGATAGCCGACAACGGGGAGATCCCACGCt           >  1:17633552/1‑35 (MQ=255)
                          ttttctttAGCCGACAACGGGGAGATCCCACGCtt          <  1:10302034‑M2/27‑1 (MQ=255)
                          tttACGTTAGCCGACAACGGGGAGATCCCACGCtt          <  1:13280506/34‑1 (MQ=255)
                          atttctttAGCCGACAACGGGGAGATCCCACGCtt          <  1:8004776‑M2/27‑1 (MQ=255)
                          aTTACGATAGCCGACAACGGGGAGATCCCACGCtt          >  1:9734912/1‑35 (MQ=255)
                          aTTACGATAGCCGACAACGGGGAGATCCCACGCtt          >  1:16054810/1‑35 (MQ=255)
                           tttttttAGCCGACAACGGGGAGATCCCACGCTTg         <  1:1840389‑M2/28‑1 (MQ=255)
                           tttgtttAGCCGACAACGGGGAGATCCCACGCTTg         <  1:7953395‑M2/28‑1 (MQ=255)
                           ttactttAGCCGACAACGGGGAGATCCCACGCTTg         <  1:10701339‑M2/28‑1 (MQ=255)
                           ttACGATAGCCGACAACGGGGAGATCCCACGCTTg         >  1:16673341/1‑35 (MQ=255)
                           ttACGATAGCCGACAACGGGGAGATCCCACGCTTg         >  1:1038108/1‑35 (MQ=255)
                           ttACGATAGCCGACAACGGGGAGATCCCACGCTTg         >  1:6600486/1‑35 (MQ=255)
                            tagtttAGCCGACAACGGGGAGATCCCACGCTTGa        <  1:4661173‑M2/29‑1 (MQ=255)
                            tACGATAGCCGACAACGGGGAGATCCCACGCTTGa        >  1:9980015/1‑35 (MQ=255)
                            tACGATAGCCGACAACGGGGAGATCCCACGCTTGa        >  1:7812378/1‑35 (MQ=255)
                            tACGATAGCCGACAACGGGGAGATCCCACGCTTGa        >  1:14315652/1‑35 (MQ=255)
                            tACGATAGCCGACAACGGGGAGATCCCACGCTTGa        >  1:2915506/1‑35 (MQ=255)
                            tACGATAGCCGACAACGGGGAGATCCCACGCTTGa        >  1:2538819/1‑35 (MQ=255)
                             tgtttAGCCGACAACGGGGAGATCCCACGCTTGAc       <  1:14405608‑M2/30‑1 (MQ=255)
                             ncGATAGCCGACAACGGGGAGATCCCACGCTTGAc       >  1:6375870/2‑35 (MQ=255)
                             gttttAGCCGACAACGGGGAGATCCCACGCTTGAc       <  1:1937519‑M2/30‑1 (MQ=255)
                             actttAGCCGACAACGGGGAGATCCCACGCTTGAc       <  1:14380300‑M2/30‑1 (MQ=255)
                             aCGATAGCCGACAACGGGGAGATCCCACGCTTGAc       >  1:263301/1‑35 (MQ=255)
                             aCGATAGCCGACAACGGCGAGATCCCACGCTTGAc       >  1:17986285/1‑35 (MQ=255)
                              tgttAGCCGACAACGGGGAGATCCCACGCTTGAcc      <  1:16597841‑M2/31‑1 (MQ=255)
                              cgttAGCCGACAACGGGGAGATCCCACGATTGAcc      <  1:11702513/32‑1 (MQ=37)
                              cGATAGCCGACAACGGGGAGATCCCACGCTTGAcc      >  1:962785/1‑35 (MQ=255)
                               tttAGCCGACAACGGGGAGATCCCACGCTTGACCg     <  1:11809062‑M2/32‑1 (MQ=255)
                               gATAGCCGACAACGGGGAGATCCCACGCTTGACCg     >  1:1661816/1‑35 (MQ=255)
                               gATAGCCGACAACGGGGAGATCCCACGCTTGACCg     >  1:4105521/1‑35 (MQ=255)
                                ttAGCCGACAACGGGGAGATCCCACGCTTGACCgg    <  1:17242474‑M2/33‑1 (MQ=255)
                                ttAGCCGACAACGGGGAGATCCCACGCTTGACCgg    <  1:15964466‑M2/33‑1 (MQ=255)
                                ttAGCCGACAACGGGGAGATCCCACGCTTGACCgg    <  1:8289746‑M2/33‑1 (MQ=255)
                                gtAGCCGACAACGGGGAGATCCCACGCTTGACCgg    <  1:438862‑M2/33‑1 (MQ=255)
                                aTAGCCGACAACGGGGAGATCCCACGCTTGACCgg    >  1:13475042/1‑35 (MQ=255)
                                aTAGCCGACAACGGGGAGATCCCACGCTTGACCgg    >  1:4822762/1‑35 (MQ=255)
                                 tAGCCGACAACGGGGAGATCCCACGCTTGACCGGt   >  1:3434565‑M2/2‑35 (MQ=255)
                                 tAGCCGACAACGGGGAGATCCCACGCTTGACCGGt   <  1:8330811‑M2/34‑1 (MQ=255)
                                 tAGCCGACAACGGGGAGATCCCACGCTTGACCGGt   >  1:6911070‑M2/2‑35 (MQ=255)
                                 tAGCCGACAACGGGGAGATCCCACGCTTGACCGGt   >  1:5241236‑M2/2‑35 (MQ=255)
                                  aGCCGACAACGGGGAGATCCCACGCTTGACCGGTa  >  1:16438853/1‑35 (MQ=255)
                                  aGCCGACAACGGGGAGATCCCACGCTTGACCGGTa  >  1:19763050/1‑35 (MQ=255)
                                  aGCCGACAACGGGGAGATCCCACGCTTGACCGGTa  >  1:19362168/1‑35 (MQ=255)
                                  aGCCGACAACGGGGAGATCCCACGCTTGACCGGTa  >  1:4148704/1‑35 (MQ=255)
                                  aGCCGACAACGGGGAGATCCCACGCTTGACCGGTa  <  1:14768729/35‑1 (MQ=255)
                                  |                                  
CACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAGATCCCACGCTTGACCGGTA  >  REL606/3480412‑3480480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.