New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 4085856 =100 (0.970)24 (0.250) 5/44 NT 23.2% intergenic (+54/‑95) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F
?REL606 4214283 = 67 (0.710)coding (1595/1650 nt) pgi glucose‑6‑phosphate isomerase

Only 100 of 164 total aligned reads displayed.

CTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGC  >  REL606/4214249‑4214317
                                  |                                  
cTGCCAGAGCTGAAAGATGATAAAGAAATcagcag                                    >  1:15980910/1‑35 (MQ=255)
cTGCCAGAGCTGAAAGATGATAAAGAAATcagcag                                    <  1:6862852/35‑1 (MQ=255)
cTGCCAGAGCTGAAAGATGATAAAGAAATcagcag                                    <  1:12037591/35‑1 (MQ=255)
cTGCCAGAGCTGAAAGATGATAAAGAAATcagcag                                    <  1:8541439/35‑1 (MQ=255)
 tGCCAGAGCTGAAAGATGATAAAGAAATCagcagc                                   >  1:17230624/1‑35 (MQ=255)
 tGCCAGAGCTGAAAGATGATAAAGAAATCagcagc                                   <  1:12236395/35‑1 (MQ=255)
 tGCCAGAGCTGAAAGATGATAAAGAAATCagcagc                                   <  1:12321740/35‑1 (MQ=255)
  gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGcc                                  >  1:13909685/1‑35 (MQ=255)
  gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGcc                                  <  1:17314278/35‑1 (MQ=255)
  gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGcc                                  >  1:12867781/1‑35 (MQ=255)
   ccAGAGCTGAAAGATGATAAAGAAATCAGCAGCCa                                 <  1:4950963/35‑1 (MQ=255)
   ccAGAGCTGAAAGATGATAAAGAAATCAGCAGCCa                                 >  1:15695856/1‑35 (MQ=255)
    cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCAc                                >  1:9102785/1‑35 (MQ=255)
    cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCAc                                >  1:18948155/1‑35 (MQ=255)
    cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCAc                                >  1:9948250/1‑35 (MQ=255)
     agagCTGAAAGATGATAAAGAAATCAGCAGCCACg                               >  1:11351920/1‑35 (MQ=255)
     agagCTGAAAGATGATAAAGAAATCAGCAGCCACg                               >  1:16402234/1‑35 (MQ=255)
       agCTGAAAGATGATAAAGAAATCAGCAGCCACGAt                             >  1:9916964/1‑35 (MQ=255)
       agCTGAAAGATGATAAAGAAATCAGCAGCCACGAt                             >  1:15725895/1‑35 (MQ=255)
        gCTGAAAGATGATAAAGAAATCAGCAGCCACGATa                            >  1:12575303/1‑35 (MQ=255)
        gCTGAAAGATGATAAAGAAATCAGCAGCCACGATa                            >  1:17306000/1‑35 (MQ=255)
         cTGAAAGATGATAAAGAAATCAGCAGCCACGATAg                           >  1:1783721/1‑35 (MQ=255)
         cTGAAAGATGATAAAGAAATCAGCAGCCACGATAg                           >  1:16597704/1‑35 (MQ=255)
         cTGAAAGATGATAAAGAAATCAGCAGCCACGATAg                           >  1:4214602/1‑35 (MQ=255)
         cTGAAAGATGATAAAGAAATCAGCAGCCACGATAg                           >  1:6478594/1‑35 (MQ=255)
           gAAAGATGATAAAGAAATCAGCAGCCACGATAGCt                         >  1:17399340/1‑35 (MQ=255)
           gAAAGATGATAAAGAAATCAGCAGCCACGATAGCt                         >  1:2846559/1‑35 (MQ=255)
           gAAAGATGATAAAGAAATCAGCAGCCACGATAGCt                         >  1:9294372/1‑35 (MQ=255)
            aaaGATGATAAAGAAATCAGCAGCCACGATAGCTc                        >  1:19252595/1‑35 (MQ=255)
            aaaGATGATAAAGAAATCAGCAGCCACGATAGCTc                        >  1:19489000/1‑35 (MQ=255)
            aaaGATGATAAAGAAATCAGCAGCCACGATAGCTc                        >  1:12458764/1‑35 (MQ=255)
            aaaGATGATAAAGAAATCAGCAGCCACGATAGCTc                        >  1:2313671/1‑35 (MQ=255)
            aaaGATGATAAAGAAATCAGCAGCCACGATAGCTc                        >  1:16537270/1‑35 (MQ=255)
            aaaGATGATAAAGAAATCAGCAGCAACGATAGCTc                        <  1:4743059/35‑1 (MQ=255)
            aaaGATGAAAAAAAAACCACCAGCCACGATAGCTc                        <  1:20102665/35‑1 (MQ=12)
             aaGATGATAAAGAAATCAGCAGCCACGATAGCTCg                       >  1:14505859/1‑35 (MQ=255)
             aaGATAAAAAAAAAACCACCAGCCACGATAGCTCg                       <  1:2187362/35‑1 (MQ=12)
              aGATGATAAAGAAATCAGCAGCCATGATAGCTCGa                      >  1:6851478/1‑35 (MQ=255)
              aGATGATAAAGAAATCAGCAGCCACGATAGCTCGa                      >  1:12841872/1‑35 (MQ=255)
              aGATAAAAAAAAAACCACCAGCCACGATAGCTCGa                      <  1:20159882/35‑1 (MQ=12)
                atgatAAAGAAATCAGCAGCCACGATAGCTCGAcc                    >  1:16362938/1‑35 (MQ=255)
                atgatAAAGAAATCAGCAGCCACGATAGCTCGAcc                    >  1:13436761/1‑35 (MQ=255)
                atgatAAAGAAATCAGCAGCCACGATAGCTCGAcc                    >  1:15166587/1‑35 (MQ=255)
                  gatAAAGAAATCAGCAGCCACGATAGCTCGACCaa                  >  1:10331530/1‑35 (MQ=255)
                  aaaaaaaaaacccccaGCCACGATAGCTCGACCaa                  <  1:11125523‑M2/19‑1 (MQ=255)
                  aaaaaaaaaacccccaGCCACGATAGCTCGACCaa                  <  1:14417619‑M2/19‑1 (MQ=255)
                   ataaaaaaacccccaGCCACGATAGCTCGACCAAt                 <  1:20308495‑M2/20‑1 (MQ=255)
                   aaaaagaaacccccaGCCACGATAGCTCGACCAAt                 <  1:4561742‑M2/20‑1 (MQ=255)
                   aaaaaaaaacccccaGCCACGATAGCTCGACCAAt                 <  1:6242381‑M2/20‑1 (MQ=255)
                    tAAAGAAATCAGCAGCCACGATAGCTCGACCAATg                >  1:9581196/1‑35 (MQ=255)
                    tAAAGAAATCAGCAGCCACGATAGCTCGACCAATg                >  1:14122934/1‑35 (MQ=255)
                    tAAAGAAATCAGCAGCCACGATAGCTCGACCAATg                >  1:1969533/1‑35 (MQ=255)
                    tAAAGAAATCAGCAGCCACGATAGCTCGACCAATg                >  1:16340402/1‑35 (MQ=255)
                    aaaaaaaacccccaGCCACGATAGCTCGACCAATg                <  1:7855256‑M2/21‑1 (MQ=255)
                    aaaaaaaacccccaGCCACGATAGCTCGACCAATg                <  1:9571317‑M2/21‑1 (MQ=255)
                    aaaaaaaacccccaGCCACGATAGCTCGACCAATg                <  1:11234372‑M2/21‑1 (MQ=255)
                     aaaaaaccccccaGCCACGATAGCTCGACCAATgg               <  1:18818946‑M2/22‑1 (MQ=255)
                     aaaaaaacccccaGCCACGATAGCTCGACCAATgg               <  1:2118457‑M2/22‑1 (MQ=255)
                     aaaaaaacccccaGCCACGATAGCTCGACCAATgg               <  1:12154751‑M2/22‑1 (MQ=255)
                     aaaaaaaccaccaGCCACGATAGCTCGACCAATgg               <  1:10149824‑M2/22‑1 (MQ=255)
                     aaaGAAATCAGCAGCCACGATAGCTCTACCAATgg               >  1:10300723/1‑35 (MQ=255)
                       aGAAATCAGCAGCCACGATAGCTCGACCAATGGTc             >  1:13945385/1‑35 (MQ=255)
                       aGAAATCAGCAGCCACGATAGCTCGACCAATGGTc             >  1:8710282/1‑35 (MQ=255)
                        gAAATCAGCAGCCACGATAGCTCGACCAATGGTCt            >  1:289724/1‑35 (MQ=255)
                        gAAATCAGCAGCCACGATAGCTCGACCAATGGTCt            >  1:18161245/1‑35 (MQ=255)
                        gAAATCAGCAGCCACGATAGCTCGACCAATGGTCt            >  1:17158915/1‑35 (MQ=255)
                        aaaacccccaGCCACGATAGCTCGACCAATGGTCt            <  1:20032548‑M2/25‑1 (MQ=255)
                         aaacccccaGCCACGATAGCTCGACCAATGGTCTg           <  1:15158048‑M2/26‑1 (MQ=255)
                         aaaTCAGCAGCCACGATAGCTCGACCAATGGTCTg           >  1:6722008/1‑35 (MQ=255)
                         aaaTCAGCAGCCACGATAGCTCGACCAATGGTCTg           >  1:3657769/1‑35 (MQ=255)
                          aacccccaGCCACGATAGCTCGACCAATGGTCTGa          <  1:8010719‑M2/27‑1 (MQ=255)
                          aacccccaGCCACGATAGCTCGACCAATGGTCTGa          <  1:9177471‑M2/27‑1 (MQ=255)
                           aTCAGCAGCCACGATAGCTCGACCAATGGGCTGAn         >  1:7726484/1‑35 (MQ=255)
                            tCAGCAGCCACTATAGCTCGACCAATGGTCTGAtt        >  1:15029244/1‑35 (MQ=255)
                            tCAGCAGCCACGATAGCTCGACCAATGGTCTGAtt        >  1:17649220/1‑35 (MQ=255)
                            gccccaGCCACGATAGCTCGACCAATGGTCTGAtt        <  1:11703544‑M2/29‑1 (MQ=255)
                             ccccaGCCACGATAGCTCGACCAATGGTCTGATTa       <  1:15677561‑M2/30‑1 (MQ=255)
                             cagcagCCACGATAGCTCGACCAATGGTCTGATTa       >  1:8827458/1‑35 (MQ=255)
                             cagcagCCACGATAGCTCGACCAATGGTCTGATTa       >  1:9998431/1‑35 (MQ=255)
                             cagcagCCACGATAGCTCGACCAATGGTCTGATTa       >  1:4521274/1‑35 (MQ=255)
                             cagcagCCACGATAGCTCGACCAATGGTCTGATTa       >  1:19252396/1‑35 (MQ=255)
                              cccaGCCACGATAGCTCGACCAATGGTCTGATTaa      <  1:16986395‑M2/31‑1 (MQ=255)
                              cccaGCCACGATAGCTCGACCAATGGTCTGATTaa      <  1:18781774‑M2/31‑1 (MQ=255)
                              agcagcCACGATAGCTCGACCAATGGTCTGATTaa      >  1:10850925/1‑35 (MQ=255)
                              agcagcCACGATAGCTCGACCAATGGTCTGATTaa      >  1:12212098/1‑35 (MQ=255)
                              agcagcCACGATAGCTCGACCAATGGTCTGATTaa      >  1:17930165/1‑35 (MQ=255)
                              accaGCCACGATAGCTCGACCAATGGTCTGATTaa      <  1:15416521‑M2/31‑1 (MQ=255)
                               ccaGCCACGATAGCTCGACCAATGGTCTGATTAAc     <  1:15435378‑M2/32‑1 (MQ=255)
                               ccaGCCACGATAGCTCGACCAATGGTCTGATTAAc     <  1:6552748‑M2/32‑1 (MQ=255)
                                caGCCACGATAGCTCGACCAATGGTCTGATTAAcc    <  1:18671073‑M2/33‑1 (MQ=255)
                                caGCCACGATAGCTCGACCAATGGTCTGATTAAcc    >  1:264802‑M2/3‑35 (MQ=255)
                                caGCCACGATAGCTCGACCAATGGTCTGATTAAcc    <  1:9732069‑M2/33‑1 (MQ=255)
                                 aGCCACGATAGCTCGGCCAATGGTCTGATTAACCg   >  1:1002665‑M2/2‑35 (MQ=255)
                                 aGCCACGATAGCTCGACCAATGGTCTGATTAACCg   >  1:7940061‑M2/2‑35 (MQ=255)
                                 aGCCACGATAGCTCGACCAATGGTCTGATTAACCg   <  1:7752239‑M2/34‑1 (MQ=255)
                                 aGCCACGATAGCTCGACCAATGGTCTGATTAACCg   <  1:5280031‑M2/34‑1 (MQ=255)
                                  gcCACGATAGCTCGACCAATTGTCTGATTAACCGc  >  1:20560850/1‑35 (MQ=255)
                                  gcCACGATAGCTCGACCAATGGTCTGATTAACCGc  >  1:19771660/1‑35 (MQ=255)
                                  gcCACGATAGCTCGACCAATGGTCTGATTAACCGc  <  1:6255888/35‑1 (MQ=255)
                                  gcCACGATAGCTCGACCAATGGTCTGATTAACCGc  >  1:6759722/1‑35 (MQ=255)
                                  |                                  
CTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGC  >  REL606/4214249‑4214317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.