New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 294957169 (0.670)15 (0.150) 5/46 NT 14.6% coding (834/996 nt) argK arginine/ornithine transport system ATPase
?REL606 = 3728925 109 (1.110)coding (59/960 nt) yibQ predicted polysaccharide deacetylase

AACAAGTGCGGCAACAACAATCGGTGGAATGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2949537‑2949571
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA  <  REL606/3728925‑3728892
                                                                     
AACAAGTGCGGCAACAACAATCGGTGGAATGGCTG                                    <  1:12968863/35‑1
AACAAGTGCGGCAACAACAATCGGTGGAATGGCTG                                    >  1:17045207/1‑35
AACAAGTGCGGCAACAACAATCGGTGGAATGGCTG                                    <  1:20335243/35‑1
 ACAAGTGCGGCAACAACAATCGGTGGAATGGCTGG                                   >  1:16009788/1‑35
  CAAGTGCGGCAACAACAATCGGTGGAATGGCTGGG                                  >  1:9067321/1‑35
  CAAGTGCGGCAACAACAATCGGTGGAATGGCTGGG                                  >  1:8732283/1‑35
  CAAGTGCGGCAACAACAATCGGTGGAATGGCTGGG                                  >  1:11616438/1‑35
  CAAGTGCGGCAACAACAATCGGTGGAATGGCTGGG                                  >  1:2656228/1‑35
  CAAGTGCGGCAACAACAATCGGTGGAATGGCTGGG                                  >  1:1875680/1‑35
   AAGTGCGGCAACAACAATCGGTGGAATGGCTGGGG                                 >  1:9949335/1‑35
   AAGTGCGGCAACAACAATCGGTGGAATGGCTGGGG                                 >  1:6425052/1‑35
   AAGTGCGGCAACAACAATCGGTGGAATGGCTGGGG                                 >  1:5077427/1‑35
   AAGTGCGGCAACAACAATCGGTGGAATGGCTGGGG                                 >  1:2797020/1‑35
   AAGTGCGGCAACAACAATCGGTGGAATGGCTGGGG                                 >  1:176164/1‑35
   AAGTGCGGCAACAACAATCGGCGGAATGGCTGGGG                                 >  1:12613268/1‑35
    AGTGCGGCAACAACAATCGGTGGAATGGCTGGGGG                                >  1:10196490/1‑35
     GTGCGGCAACAACAATCGGTGGAATGGCTGGGGGA                               >  1:9888343/1‑35
      TGCGGCAACAACAATCGGTGGAATGGCTGGGGGgg                              >  1:9818209/1‑33
      TGCGGCAACAACAATCGGTGGAATGGCTGGGGGAG                              >  1:18227692/1‑35
      TGCGGCAACAACAATCGGTGGAATGGCTGGGGGAG                              >  1:5490969/1‑35
       GCGGCAACAACAATCGGTGGAATGGCTGGGGGAGc                             >  1:16690098/1‑34
        CGGCAACAACAATCGGTGGAATGGCTGGGGGGGGA                            >  1:19506754/1‑35
         GGCAACAACAATCGGTGGAATGGCTGGGGGGGGAG                           >  1:6426033/1‑35
         GGCAACAACAATCGGTGGAATGGCTGGGGGAGGcg                           >  1:11535959/1‑33
         GGCAACAACAATCGGTGGAATGGCTGGGGGAGGAG                           >  1:17997799/1‑35
           CAACAACAATCGGTGGAATGGCTGGGGGAGGAGAa                         >  1:17955610/1‑34
            AACAACAATCGGTGGAATGGCTGGGGGAGGAGAcc                        >  1:7145359/1‑33
            AACAACAATCGGTGGAATGGCTGGGGGAGGAGAca                        >  1:2082029/1‑33
            AACAACAATCGGTGGAATGGCTGGGGGAGGAGAGC                        >  1:9133808/1‑35
             ACAATAATCGGTGGAATGGCTGGGGGAGGAGAGCG                       >  1:2056057/1‑35
             ACAACAATCGGTGGAATGGCTGGGGGAGGAGAccc                       >  1:19103559/1‑32
             ACAACAATCGGTGGAATGGCTGGGGGAGGAGAACG                       >  1:11428225/1‑35
              CAACAATCGGTGGAATGGCTGGGGGAGGAGAACGg                      >  1:15547951/1‑34
                               ttgGGGGGAGGAGAGCGCCAACAGAGCGGCAAATG     >  1:17484638/4‑35
                                  GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA  >  1:17028697/1‑35
                                  GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA  >  1:2789503/1‑35
                                  GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA  <  1:877285/35‑1
                                  GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA  <  1:8562182/35‑1
                                  GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA  >  1:8245993/1‑35
                                  GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA  <  1:2456849/35‑1
                                  GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA  >  1:12928429/1‑35
                                  GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA  <  1:6270524/35‑1
                                  GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA  <  1:2937964/35‑1
                                  GGGGGAGGAGAGCGCCAACAGAGCGCCAAATGCAA  <  1:2852735/35‑1
                                                                     
AACAAGTGCGGCAACAACAATCGGTGGAATGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2949537‑2949571
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA  <  REL606/3728925‑3728892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.