New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 564054 =42 (0.410)9 (0.120) 3/34 NT 14.5% coding (2252/2973 nt) nfrA bacteriophage N4 receptor, outer membrane subunit
?REL606 1414711 = 76 (1.040)coding (223/276 nt) racC predicted protein

GGTCGCCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/564094‑564054
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcttTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAC  >  REL606/1414711‑1414744
                                                                           
GGTCGCCGCTGGACGTTCAGTTTCGATTCTTCTAT                                          <  1:18093958/35‑1
GGTCGCCGCTGGACGTTCAGTTTCGATTCTTCTAT                                          <  1:1085650/35‑1
GGTCGCCGCTGGACGTTCAGTTTCGATTCTTCTAT                                          <  1:19315925/35‑1
GGTCGCCGCTGGACGTTCAGTTTCGATTCTTCTAT                                          >  1:8027860/1‑35
 GTCGCCGCTGGACGTTCAGTTTCGATTCTTCTATC                                         <  1:11818688/35‑1
 GTCGCCGCTGGACGTTCAGTTTCGATTCTTCTATC                                         <  1:4821257/35‑1
 GTCGCCGCTGGACGTTCAGTTTCGATTCTTCTATC                                         <  1:5148911/35‑1
 GTCGCCGCTGGACGTTCAGTTTCGATTCTTCTATC                                         <  1:5211300/35‑1
 GTCGCCGCTGGACGGTCAGTTTCGATTCTTCTATC                                         >  1:3837558/1‑35
  TCGCCGCTGGACGTTCAGTTTCGATTCTTCTATCG                                        >  1:10573014/1‑35
  TCGCCGCTGGACGTTCAGTTTCGATTCTTCTATCG                                        <  1:20256126/35‑1
  TCGCCGCTGGACGTTCAGTTTCGATTCTTCTATCG                                        <  1:15254890/35‑1
  TCGCCGCTGGACGTTCAGTTTCGATTCTTCTATCG                                        <  1:12055733/35‑1
   CGCCGCTGGACGTTCAGTTTCGATTCTTCTATCag                                       <  1:14380587/35‑3
   CGCCGCTGGACGTTCAGTTTCGATTCTTCTATCGG                                       <  1:15420733/35‑1
   CGCCGCTGGACGTTCAGTTTCGATTCTTCTATCGG                                       >  1:12537957/1‑35
    GCCGCTGGACGTTTAGTTTCGATTCTTCTATCGGC                                      >  1:16561536/1‑35
    GCCGCTGGACGTTCAGTTTCGATTCTTCTATCGGC                                      >  1:11354315/1‑35
    GCCGCTGGACGTTCAGTTTCGATTCTTCTATCGGC                                      <  1:18345677/35‑1
    GCCGCTGGACGTTCAGTTTCGATTCTTCTATCGGC                                      >  1:1341133/1‑35
    GCCGCTGGACGTTCAGTTTCGATTCTTCTATCGGC                                      >  1:7413521/1‑35
    GCCGCTGGACGTTAAGTTTCGATTCTTCTATCGGC                                      <  1:693516/35‑1
     CCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCT                                     >  1:8037763/1‑35
     CCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCT                                     <  1:15310272/35‑1
     CCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCT                                     <  1:3912466/35‑1
     CCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCT                                     >  1:18837899/1‑35
     CCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCT                                     >  1:12754234/1‑35
      CGCTGGACGTTCAGTTTCGATTCTTCTATCGGCTT                                    <  1:12635491/35‑1
      CGCTGGACGTTCAGTTTCGATTCTTCTATCGGCTT                                    >  1:13725278/1‑35
      CGCTGGACGTTCAGTTTCGATTCTTCTATCGGCTT                                    <  1:1861200/35‑1
        CTGGACGTTCAGTTTCGATTCTTCTATCGGCTTTT                                  >  1:924259/1‑35
        CTGGACGTTCAGTTTCGATTCTTCTATCGGCTTTT                                  >  1:19596845/1‑35
        CTGGACGTTCAGTTTCGATTCTTCTATCGGCTTTT                                  >  1:4632149/1‑35
        CTGGACGTTCAGTTTCGATTCTTCTATCGGCTTTT                                  >  1:14790910/1‑35
        CTGGACGTTCAGTTTCGATTCTTCTATCGGCTTTT                                  >  1:13329512/1‑35
          GGACGTTCAGTTTCGATTCTTCTATCGGCTTTTTT                                >  1:15757594/1‑35
           GACGTTCAGTTTCGATTCTTCTATCGGCTTTTTTT                               >  1:6734249/1‑35
           GACGTTCAGTTTCGATTCTTCTATCGGCTTTTGTT                               >  1:1161414/1‑35
            ACGTTCAGTTTCGATTCTTCTATCGGCTTTTTTTT                              >  1:6719512/1‑35
            ACGTTCAGTTTCGATTCTTCTATCGGCTTTTGTTc                              >  1:10466231/1‑34
            ACGTTCAGTTTCGATTCTTCTATCGGCTTTTGTTT                              >  1:11615009/1‑35
             CGTTCAGTTTCGATTCTTCTATCGGCTTTTTTTTC                             >  1:9114290/1‑35
             CGTTCAGTTTCGATTCTTCTATCGGCTTTTTGTTC                             >  1:15417947/1‑35
             CGTTCAGTTTCGATTCTTCTATCGGCTTTTGTTTC                             >  1:11993559/1‑35
             CGTTCAGTTTCGATTCTTCTATCGGCTTTTGTTTC                             >  1:6177852/1‑35
              GTTCAGTTTCGATTCTTCTATCGGCTTTTTTTTCT                            >  1:9944821/1‑35
               TTCAGTTTCGATTCTTCTATCGGCTTTTTTTTtgc                           >  1:16196160/1‑32
                TCAGTTTCGATTCTTCTATCGGCTTTTTTTTTTGg                          >  1:2650312/1‑34
                                  TCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGAT        <  1:11884066/35‑1
                                  TCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGAT        <  1:7347305/35‑1
                                  TCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGAT        <  1:17330639/35‑1
                                   CGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATA       <  1:18467498/35‑1
                                   CGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATA       <  1:19219089/35‑1
                                    GGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAT      <  1:3321828/35‑1
                                    GGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAT      >  1:15500899/1‑35
                                    GGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAT      <  1:15067213/35‑1
                                    GGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAT      <  1:14981562/35‑1
                                    GGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAT      <  1:5938333/35‑1
                                    GGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAT      >  1:12231957/1‑35
                                     GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG     >  1:9563760/1‑35
                                     GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG     <  1:955887/35‑1
                                     GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG     <  1:19200506/35‑1
                                     GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG     <  1:1921095/35‑1
                                     GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG     <  1:13249460/35‑1
                                     GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG     <  1:14587746/35‑1
                                     GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG     <  1:14622907/35‑1
                                      CTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGC    >  1:7734626/1‑35
                                      CTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGC    <  1:17174908/35‑1
                                      CTTTTTTTTCTGCGGGAAGATTCTTTCCGATATGC    <  1:2637820/35‑1
                                       TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCA   <  1:13407954/35‑1
                                       TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCA   <  1:1483133/35‑1
                                       TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCA   >  1:2553187/1‑35
                                        TTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAC  <  1:1552041/35‑1
                                        TTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAC  >  1:6162695/1‑35
                                        TTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAC  >  1:8751531/1‑35
                                        TTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAC  <  1:17305235/35‑1
                                                                           
GGTCGCCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/564094‑564054
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcttTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAC  >  REL606/1414711‑1414744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.