New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 447249 =84 (0.820)18 (0.180) 5/46 NT 17.5% intergenic (‑21/‑197) tesB/ybaY acyl‑CoA thioesterase II/predicted outer membrane lipoprotein
?REL606 1286712 = 89 (0.900)intergenic (+36/‑147) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein

Only 100 of 228 total aligned reads displayed.

CGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTC  >  REL606/1286678‑1286746
                                  |                                  
gttatactcaactcactttggcttgctgcggcagg                                    >  1:8794015‑M2/35‑35 (MQ=255)
 ttatactcaactcactttggcttgctgcggccggc                                   >  1:1108847‑M2/34‑34 (MQ=255)
 tggcaagcgaatgaatatgccgtggtggGGCgggg                                   <  1:15152729‑M1/7‑1 (MQ=255)
 tggcaagcgaatgaatatgccgtggtggGGCgggg                                   <  1:13391104‑M1/7‑1 (MQ=255)
 tggcaagcgaatgaatatgccgtggtggGGCgggg                                   <  1:8602864‑M1/7‑1 (MQ=255)
 taggccgccagaaccagttgttgcgtaaGGCgggg                                   <  1:6799146‑M1/7‑1 (MQ=255)
 taggccgccagaaccagttgttgcgtaaGGCgggg                                   <  1:12547507‑M1/7‑1 (MQ=255)
 gAATTTTAGTTCACATAGACCCTGCTTCGGCgggg                                   >  1:9641240/1‑35 (MQ=255)
 gAATTTTAGTTCACATAGACCCTGCTTCGGCgggg                                   <  1:14110352/35‑1 (MQ=255)
  aggccgccagaaccagttgttgcgtaaGGCGGGGt                                  <  1:10396277‑M1/8‑1 (MQ=255)
  aggccgccagaaccagttgttgcgtaaGGCGGGGt                                  <  1:18878622‑M1/8‑1 (MQ=255)
  actgcgcccagcaggcagggcaggagtcGCGGGGt                                  <  1:6735293‑M1/7‑1 (MQ=255)
  aaTTTTAGTTCACATAGACCCTGCTTCGGCGGGGt                                  <  1:15519154/35‑1 (MQ=255)
  aaTTTTAGTTCACATAGACCCTGCTTCGGCGGGGt                                  <  1:15107725/35‑1 (MQ=255)
  aaTTTTAGTTCACATAGACCCTGCTTCGGCGGGGt                                  <  1:20594066/35‑1 (MQ=255)
   ggccgccagaaccagttgttgcgtaaGGCGGGGtt                                 <  1:6858154‑M1/9‑1 (MQ=255)
   atactcaactcactttggcttgctgcggcagGGtt                                 >  1:4593894‑M2/32‑35 (MQ=255)
   atactcaactcactttggcttgctgcggcagGGtt                                 >  1:515354‑M2/32‑35 (MQ=255)
   aTTTTAGTTCACATAGACCCTGCTTCGGCtggggt                                 >  1:10054941/1‑33 (MQ=37)
   aTTTTAGTTCACATAGACCCTGCTTCGGCGGGGtt                                 <  1:5834969/35‑1 (MQ=255)
    tgcgcccagcaggcagggcaggagtcgcgggggtt                                <  1:7389424‑M1/9‑4 (MQ=255)
    tactcaactcactttggcttgctgcggcagGTttt                                >  1:14688577‑M2/31‑35 (MQ=255)
    gccgccagaaccagttgttgcgtaaGGCGGGgtta                                <  1:16954289‑M1/10‑2 (MQ=255)
    caagcgaatgaatatgccgtggtggggcgggggtt                                <  1:8449417‑M1/10‑4 (MQ=255)
    caagcgaatgaatatgccgtggtggggcggggggg                                <  1:7171694‑M1/10‑4 (MQ=255)
     tttAGTTCACATAGACCCTGCTTCGGCGGGGgttt                               >  1:6024420/1‑35 (MQ=255)
     gcgcccagcaggcagggcaggagtcGCGGGGtttt                               <  1:15266931‑M1/10‑1 (MQ=255)
     ccgccagaaccagttgttgcgtaaGGCGGGGtttt                               <  1:7900049‑M1/11‑1 (MQ=255)
     aagcgaatgaatatgccgtggtggGGCGGGgtttg                               <  1:10717920‑M1/11‑2 (MQ=255)
      ttAGTTCACATAGACCCTGCTTCGGCGGGGttttt                              <  1:13335840/35‑1 (MQ=255)
      ctcaactcactttggcttgctgcggcagGGttttt                              >  1:11804003‑M2/29‑35 (MQ=255)
      cgccagaaccagttgttgcgtaaGGCGGGTttttt                              <  1:1097387‑M1/12‑1 (MQ=255)
      cgccagaaccagttgttgcgtaaGGCGGGGttttt                              <  1:5177674‑M1/12‑1 (MQ=255)
      agcgaatgaatatgccgtggtggCGCGGGGttttt                              <  1:15657331‑M1/12‑1 (MQ=255)
       tcaactcactttggcttgctgcggcagGGtttttt                             >  1:18590846‑M2/28‑35 (MQ=255)
       tcaactcactttggcttgctgcggcagGGttgttt                             >  1:9217269‑M2/28‑35 (MQ=255)
       gcccagcaggcagggcaggagtcGCGGGGtgtttt                             <  1:8241798‑M1/12‑1 (MQ=255)
       gccagaaccagttgttgcgtaaGGCGGGGtttttt                             <  1:6588445‑M1/13‑1 (MQ=255)
        cgaatgaatatgccgtggtggGGCGGGGttttttt                            <  1:16936278‑M1/14‑1 (MQ=255)
        cgaatgaatatgccgtggtggGGCGGGGttttttt                            <  1:4422187‑M1/14‑1 (MQ=255)
        ccagaaccagttgttgcgtaaGGCGGGGttttttt                            <  1:3839295‑M1/14‑1 (MQ=255)
        caactcactttggcttgctgcggcagGgttttttc                            >  1:16507253‑M2/27‑34 (MQ=255)
        aGTTCACATAGACCCTGCTTCGGCGGGGttttttt                            <  1:15749372/35‑1 (MQ=255)
        aGTTCACATAGACCCTGCTTCGGCGGGGgtttttt                            >  1:15974824/1‑35 (MQ=255)
         gTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTa                           <  1:421066/35‑1 (MQ=255)
         ccagcaggcagggcaggagtcGCGGGGTTTTTTTa                           <  1:4449016‑M1/14‑1 (MQ=255)
         cagaaccagttgttgcgtaaGGCGgggtttttctt                           <  1:13832342‑M1/15‑4 (MQ=255)
         cagaaccagttgttgcgtaaGGCGgggtttttctt                           <  1:10246583‑M1/15‑4 (MQ=255)
         cagaaccagttgttgcgtaaGGCGGGgtttttttt                           <  1:9088719‑M1/15‑2 (MQ=255)
         cagaaccagttgttgcgtaaGGCGGGgtttttttc                           <  1:17758393‑M1/15‑2 (MQ=255)
         cagaaccagttgttgcgtaaGGCGGGGTTTTTTTa                           <  1:2220813‑M1/15‑1 (MQ=255)
         aactcactttggcttgctgcggcagGgtttttttt                           >  1:3030599‑M2/26‑34 (MQ=255)
          ttCACATAGACCCTGCTTCGGCGGGGttttttttt                          >  1:17694/1‑33 (MQ=255)
          ttCACATAGACCCTGCTTCGGCGGGGTTTTTTTAt                          <  1:12113704/35‑1 (MQ=255)
          ttCACATAGACCCTGCTTCGGCGGGGGTTTTTTAt                          >  1:8284543/1‑35 (MQ=255)
          ttCACATAGACACTGCTTCGGCGGGGTTTTTTTAt                          <  1:9888925/35‑1 (MQ=255)
          tccacaTAGACCCTGCTTCGGCGGGGGTTTTTTAt                          >  1:576444/3‑35 (MQ=25)
          cagcaggcagggcaggagtcGCGgggttttttcac                          <  1:200466‑M1/15‑4 (MQ=255)
          cagcaggcagggcaggagtcGCGGGGTTTTTTTAt                          <  1:17151065‑M1/15‑1 (MQ=255)
           tCACATAGACCCTGCTTCGGCGGGGGTTTTTTATg                         >  1:9741248/1‑35 (MQ=255)
           ctcactttggcttgctgcggcagggttttttttgg                         >  1:4015481‑M2/24‑32 (MQ=255)
           ctcactttggcttgctgcggcagGGTTTTTTTTTg                         >  1:16550107‑M2/24‑35 (MQ=255)
            tcactttggcttgctgcggcagGGTTTTTTTTTgg                        >  1:18337540‑M2/23‑35 (MQ=255)
            tcactttggcttgctgcggcagGGTTTTTTTTTgg                        >  1:12200993‑M2/23‑35 (MQ=255)
            aaccagttgttgcgtaaGGCGGGGTTTTtttacgg                        <  1:12388186‑M1/18‑4 (MQ=255)
             acaTAGACCCTGCTTCGGCGGGGTTTTTTTATggg                       <  1:10291870/35‑1 (MQ=255)
             acaTAGACCCTGCTTCGGCGGGGTTTTTTTATggg                       <  1:4068029/35‑1 (MQ=255)
              caTAGACCCTGCTTCTGCGTGGTTTTTTTATGGGc                      >  1:16778687/1‑35 (MQ=25)
               aTAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCa                     <  1:13014682/35‑1 (MQ=255)
               aTAGACCCTGCTTCGGCGGGGGTTTTTTTTTGGCa                     >  1:16071287/1‑35 (MQ=18)
                tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc                    <  1:7533223/35‑1 (MQ=255)
                tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc                    <  1:8998668/35‑1 (MQ=255)
                tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc                    <  1:19426065/35‑1 (MQ=255)
                tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc                    <  1:19211715/35‑1 (MQ=255)
                tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc                    <  1:5983221/35‑1 (MQ=255)
                tAGACCCTGCTTCGGCGGGGGTTTTTTTTGGGCAc                    >  1:4860414/1‑35 (MQ=25)
                tAGACACTGCTTCGGCGGGGTTTTTTTATGGGCAc                    <  1:13241447/35‑1 (MQ=255)
                 aGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACg                   <  1:17616947/35‑1 (MQ=255)
                  gACCCTGCTTCGGCGGGGTTTTTTTATGGGCACgg                  <  1:18429771/35‑1 (MQ=255)
                  gACCCTGCTTCGGCGGGGTTTTTTTATGGGCACgg                  <  1:4913605/35‑1 (MQ=255)
                  gACCCTGCTTCGGCGGGGGTTTTTTATTGGGACgg                  >  1:20335957/1‑35 (MQ=21)
                   ccccTGCTTCGGCGGGGTTTTTTTATGGGCACGGt                 <  1:247416/34‑1 (MQ=255)
                   aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGt                 <  1:11407610/35‑1 (MQ=255)
                   aCCCTGCTTCGGCGGGGGTTTTTTATGGGCACggg                 >  1:8027447/1‑34 (MQ=255)
                    cccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTg                <  1:1734396/35‑1 (MQ=255)
                     ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGc               <  1:7701132/35‑1 (MQ=255)
                      cTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCg              <  1:2380369/35‑1 (MQ=255)
                       tGCTTGGGCGGGGTTTTTTTATGGGCACGGTGCgg             <  1:5321011/35‑1 (MQ=255)
                       tGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCgg             <  1:18172816/35‑1 (MQ=255)
                        gCTTCGGCGGTGTTTTTTTATGGGCACGGTGCggg            <  1:1968444/35‑1 (MQ=255)
                          ttCGTCGGGGTTTTTTTATGGGCACGGTGCGGGGt          >  1:20194319/1‑35 (MQ=255)
                              gctgGGTTTTTTTATGGGCACGGTGCGGGGTGAGt      >  1:4998928‑M2/5‑35 (MQ=255)
                              GCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGt      >  1:7205126‑M1/1‑35 (MQ=255)
                              GCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGt      <  1:14945268‑M1/35‑1 (MQ=255)
                               CGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGtt     >  1:5381239‑M1/1‑35 (MQ=255)
                                GGGGTTTTTTTATGGGCACGGTGCGGGGCGAGTTg    <  1:2918252‑M1/35‑1 (MQ=255)
                                 gGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGt   <  1:9418298‑M2/34‑1 (MQ=255)
                                  ggTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTc  >  1:6179304/1‑35 (MQ=255)
                                  ggTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTc  >  1:19890461/1‑35 (MQ=255)
                                  ggTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTc  >  1:11288712/1‑35 (MQ=255)
                                  |                                  
CGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTC  >  REL606/1286678‑1286746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.