New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1 =0 (0.000)138 (1.340) 44/48 NT 100% intergenic (–/‑189) –/thrL –/thr operon leader peptide
?REL606 = 4629812 0 (0.000)intergenic (+24/–) lasT/– predicted rRNA methyltransferase/–

Only 100 of 177 total aligned reads displayed.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCTTTTCATTCTGACTGCAACGGGCAATATGTCT  >  REL606/1‑35
                                  |                                  
caccaaataaaaaacgccttagtaagtatttttca                                    <  1:1159136‑M1/1‑1 (MQ=255)
 accaaataaaaaacgccttagtaagtatttttcAg                                   >  1:20391163‑M1/34‑35 (MQ=255)
 accaaataaaaaacgccttagtaagtatttttcAg                                   >  1:2836537‑M1/34‑35 (MQ=255)
  ccaaataaaaaacgccttagtaagtatttttcAGc                                  >  1:7785479‑M1/33‑35 (MQ=255)
  ccaaataaaaaacgccttagtaagtatttttcAGc                                  >  1:4523013‑M1/33‑35 (MQ=255)
    aaataaaaaacgccttagtaagtatttttcAGCtt                                <  1:1659285‑M1/5‑1 (MQ=255)
    aaataaaaaacgccttagtaagtatttttcAGCtt                                >  1:5612121‑M1/31‑35 (MQ=255)
     aataaaaaacgccttagtaagtatttttcAGCttt                               <  1:15657492‑M1/6‑1 (MQ=255)
     aataaaaaacgccttagtaagtatttttcAGCttt                               <  1:5174962‑M1/6‑1 (MQ=255)
      ataaaaaacgccttagtaagtatttttcAGCtttt                              >  1:16071356‑M1/29‑35 (MQ=255)
      ataaaaaacgccttagtaagtatttttcAGCtttt                              >  1:15417366‑M1/29‑35 (MQ=255)
      ataaaaaacgccttagtaagtatttttcAGCtttt                              >  1:18435823‑M1/29‑35 (MQ=255)
       taaaaaacgccttagtaagtatttttcAGCTTTTc                             >  1:3747789‑M1/28‑35 (MQ=255)
       taaaaaacgccttagtaagtatttttcAGCTTTTc                             >  1:8182524‑M1/28‑35 (MQ=255)
       taaaaaacgccttagtaagtatttttcAGCTTTTc                             >  1:3799087‑M1/28‑35 (MQ=255)
       taaaaaacgccttagtaagtatttttcAGCTTTTc                             >  1:5545615‑M1/28‑35 (MQ=255)
       taaaaaacgccttagtaagtatttttcAGCTTTTc                             <  1:6464754‑M1/8‑1 (MQ=255)
       taaaaaacgccttagtaagtatttttcAGCTTTTc                             >  1:6297113‑M1/28‑35 (MQ=255)
       taaaaaacgccttagtaagtatttttcAGCTTTTc                             >  1:11216469‑M1/28‑35 (MQ=255)
        aaaaaacgccttagtaagtatttttcAGCTTTTCa                            >  1:3198775‑M1/27‑35 (MQ=255)
        aaaaaacgccttagtaagtatttttcAGCTTTTCa                            >  1:20256726‑M1/27‑35 (MQ=255)
        aaaaaacgccttagtaagtatttttcAGCTTTTCa                            >  1:6412619‑M1/27‑35 (MQ=255)
        aaaaaacgccttagtaagtatttttcAGCTCTTCa                            <  1:9023592‑M1/9‑1 (MQ=255)
         aaaaacgccttagtaagtatttttcAGCTTTTCAt                           >  1:8050918‑M1/26‑35 (MQ=255)
         aaaaacgccttagtaagtatttttcAGCTTTTCAt                           <  1:9119318‑M1/10‑1 (MQ=255)
         aaaaacgccttagtaagtatttttcAGCTTTTCAt                           >  1:20463876‑M1/26‑35 (MQ=255)
         aaaaacgccttagtaagtatttttcAGCTTTTCAt                           >  1:13291826‑M1/26‑35 (MQ=255)
          aaaacgccttagtaagtatttttcAGCTTTTCAtt                          >  1:8692195‑M1/25‑35 (MQ=255)
          aaaacgccttagtaagtatttttcAGCTTTTCAtt                          >  1:8429812‑M1/25‑35 (MQ=255)
          aaaacgccttagtaagtatttttcAGCTTTTCAtt                          <  1:3566798‑M1/11‑1 (MQ=255)
          aaaacgccttagtaagtatttttcAGCTTTTCAtt                          <  1:13837302‑M1/11‑1 (MQ=255)
           aaacgccttagtaagtatttttcAGCTTTTCATTc                         <  1:7470463‑M1/12‑1 (MQ=255)
           aaacgccttagtaagtatttttcAGCTTTTCATTc                         <  1:7157‑M1/12‑1 (MQ=255)
            aacgccttagtaagtatttttcAGCTTTTCATTCt                        >  1:11379169‑M1/23‑35 (MQ=255)
            aacgccttagtaagtatttttcAGCTTTTCATTCt                        >  1:17690743‑M1/23‑35 (MQ=255)
             acgccttagtaagtatttttcAGCTTTTCATTCTg                       <  1:699895‑M1/14‑1 (MQ=255)
             acgccttagtaagtatttttcAGCTTTTCATTCTg                       >  1:16883227‑M1/22‑35 (MQ=255)
             acgccttagtaagtatttttcAGCTTTTCATTCTg                       >  1:14703614‑M1/22‑35 (MQ=255)
             acgccttagtaagcatttttcAGCTTTTCATTCTg                       <  1:19762767‑M1/14‑1 (MQ=255)
              cgccttagtaagtatttttcAGCTTTTCATTCTGa                      <  1:17243050‑M1/15‑1 (MQ=255)
              cgccttagtaagtatttttcAGCTTTTCATTCTGa                      >  1:19551784‑M1/21‑35 (MQ=255)
                ccttagtaagtatttttcAGCTTTTCATTCTGACt                    <  1:461549‑M1/17‑1 (MQ=255)
                ccttagtaagtatttttcAGCTTTTCATTCTGACt                    <  1:12794744‑M1/17‑1 (MQ=255)
                 cttagtaagtatttttcAGCTTTTCATTCTGACTg                   >  1:9682316‑M1/18‑35 (MQ=255)
                 cttagtaagtatttttcAGCTTTTCATTCTGACTg                   >  1:20179481‑M1/18‑35 (MQ=255)
                 cttagtaagtatttttcAGCTTTTCATTCTGACTg                   >  1:3616282‑M1/18‑35 (MQ=255)
                 cttagtaagtatttttcAGCTTTTCATTCTGACTg                   >  1:5315748‑M1/18‑35 (MQ=255)
                  ttagtaagtatttttcAGCTTTTCATTCTGACTGc                  >  1:522044‑M1/17‑35 (MQ=255)
                   tagtaagtatttttcAGCTTTTCATTCTGACTGCa                 <  1:16941806‑M1/20‑1 (MQ=255)
                   tagtaagtatttttcAGCTTTTCATTCTGACTGCa                 <  1:20013663‑M1/20‑1 (MQ=255)
                   tagtaagtatttttcAGCTTTTCATTCTGACTGCa                 <  1:11067715‑M1/20‑1 (MQ=255)
                   tagtaagtatttttcAGCTTTTCATTCTGACTGCa                 <  1:10690759‑M1/20‑1 (MQ=255)
                    agtaagtatttttcAGCTTTTCATTCTGACTGCaa                <  1:13419192‑M1/21‑1 (MQ=255)
                     gtaagtatttttcAGCTTTTCATTCTGACTGCAAc               >  1:15888911‑M1/14‑35 (MQ=255)
                      taagtatttttcAGCTTTTCATTCTGACTGCAACg              >  1:179734‑M1/13‑35 (MQ=255)
                      taagtatttttcAGCTTTTCATTCTGACTGCAACg              <  1:5239187‑M1/23‑1 (MQ=255)
                      taagtatttttcAGCTTTTCATTCTGACTGCAACg              >  1:6004016‑M1/13‑35 (MQ=255)
                      taagtatttttcAGCTTTTCATTCTGACTGCAACg              <  1:13362912‑M1/23‑1 (MQ=255)
                      taagtatttttcAGCTTTTCATTCTGACTGCAACg              >  1:1464278‑M1/13‑35 (MQ=255)
                      taagtatttttcAGCTTTTCATTCTGACTGCAACg              <  1:7709741‑M1/23‑1 (MQ=255)
                      taagtatttttcAGCTTTTCATTCTGACTGCAACg              >  1:2938087‑M1/13‑35 (MQ=255)
                      taagtatttttcAGCTTTTCATTCTGACTGCAACg              >  1:14175845‑M1/13‑35 (MQ=255)
                       aagtatttttcAGCTTTTCATTCTGACTGCAACgg             <  1:19716525‑M1/24‑1 (MQ=255)
                       aagtatttttcAGCTTTTCATTCTGACTGCAACgg             <  1:7806586‑M1/24‑1 (MQ=255)
                       aagtatttttcAGCTTTTCATTCTGACTGCAACgg             <  1:13132585‑M1/24‑1 (MQ=255)
                       aagtatttttcAGCTTTTCATTCTGACTGCAACgg             <  1:15181822‑M1/24‑1 (MQ=255)
                       aagtatttttcAGCTTTTCATTCTGACTGCAACgg             <  1:13949850‑M1/24‑1 (MQ=255)
                        agtatttttcAGCTTTTCATTCTGACTGCAACggg            >  1:910186‑M1/11‑35 (MQ=255)
                        agtatttttcAGCTTTTCATTCTGACTGCAACggg            <  1:16324393‑M1/25‑1 (MQ=255)
                        agtatttttcAGCTTTTCATTCTGACTGCAACggg            >  1:12633690‑M1/11‑35 (MQ=255)
                        agtatttttcAGCTTTTCATTCTGACTGCAACggg            <  1:10253143‑M1/25‑1 (MQ=255)
                         nnattnntcAGCTTTTCATTCTGACTGCAACGGGc           >  1:20258472‑M1/10‑35 (MQ=255)
                         gtatttttcAGCTTTTCATTCTGACTGCAACGGGc           <  1:13672419‑M1/26‑1 (MQ=255)
                         gtatttttcAGCTTTTCATTCTGACTGCAACGGGc           >  1:15904014‑M1/10‑35 (MQ=255)
                         gtatttttcAGCTTTTCATTCTGACTGCAACGGGc           <  1:4290219‑M1/26‑1 (MQ=255)
                         gtatttttcAGCTTTTCATTCTGACTGCAACGGGc           >  1:15072621‑M1/10‑35 (MQ=255)
                         gtatttttcAGCTTTTCATTCTGACTGCAACGGGc           <  1:8322326‑M1/26‑1 (MQ=255)
                         gtatttttcAGCTTTTCATTCTGACTGCAACGGGc           >  1:12121598‑M1/10‑35 (MQ=255)
                         gtatttttcAGCTTTTCATTCTGACTGCAACGGGc           >  1:4901699‑M1/10‑35 (MQ=255)
                          tatttttcAGCTTTTCATTCTGACTGCAACGGGCa          <  1:17138680‑M1/27‑1 (MQ=255)
                          tatttttcAGCTTTTCATTCTGACTGCAACGGGCa          <  1:1757959‑M1/27‑1 (MQ=255)
                           atttttcAGCTTTTCATTCTGACTGCAACGGGCaa         >  1:14318466‑M1/8‑35 (MQ=255)
                           atttttcAGCTTTTCATTCTGACTGCAACGGGCaa         <  1:10408355‑M1/28‑1 (MQ=255)
                           atttttcAGCTTTTCATTCTGACTGCAACGGGCaa         >  1:20481133‑M1/8‑35 (MQ=255)
                           atttttcAGCTTTTCATTCTGACTGAAACGGGCaa         >  1:8957497‑M1/8‑35 (MQ=255)
                             ttttcAGCTTTTCATTCTGACTGCAACGGGCAata       <  1:3983259‑M1/30‑1 (MQ=255)
                              tttcAGCTTTTCATTCTGACTGCAACGGGCAatat      >  1:5833886‑M1/5‑35 (MQ=255)
                              tttcAGCTTTTCATTCTGACTGCAACGGGCAatat      >  1:12019818‑M1/5‑35 (MQ=255)
                              tttcAGCTTTTCATTCTGACTGCAACGGGCAatat      >  1:7211853‑M1/5‑35 (MQ=255)
                               ttcAGCTTTTCATTCTGACTGCAACGGGCAATATg     >  1:989113‑M1/4‑35 (MQ=255)
                               ttcAGCTTTTCATTCTGACTGCAACGGGCAATATg     <  1:15567660‑M1/32‑1 (MQ=255)
                                tcAGCTTTTCATTCTGACTGCAACGGGCAATATGt    <  1:191650‑M1/33‑1 (MQ=255)
                                tcAGCTTTTCATTCTGACTGCAACGGGCAATATGt    <  1:18227986‑M1/33‑1 (MQ=255)
                                 cAGCTTTTCATTCTGACTGCAACGGGCAATATGTc   <  1:1963572‑M1/34‑1 (MQ=255)
                                 cAGCTTTTCATTCTGACTGCAACGGGCAATATGTc   >  1:9643794‑M1/2‑35 (MQ=255)
                                 cAGCTTTTCATTCTGACTGCAACGGGCAATATGTc   >  1:13847329‑M1/2‑35 (MQ=255)
                                 cAGCTTTTCATTCTGACTGCAACGGGCAATATGTc   >  1:10155585‑M1/2‑35 (MQ=255)
                                  aGCTTTTCATTCTGACTGCAACGGGCAATATGtct  <  1:5741535/35‑1 (MQ=255)
                                  aGCTTTTCATTCTGACTGCAACGGGCAATATGtct  >  1:18552206/1‑35 (MQ=255)
                                  aGCTTTTCATTCTGACTGCAACGGGCAATATGtct  <  1:1434249/35‑1 (MQ=255)
                                  |                                  
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCTTTTCATTCTGACTGCAACGGGCAATATGTCT  >  REL606/1‑35

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.