New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1711816 = | 78 (0.760) | 21 (0.250) | 4/40 | NT | 22.6% | coding (188/816 nt) | ydhO | predicted lipoprotein |
? | REL606 | = 2450890 | 79 (0.920) | intergenic (‑182/+27) | yfeA/alaX | predicted diguanylate cyclase/tRNA‑Ala |
Only 100 of 178 total aligned reads displayed.
ACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCT > REL606/1711782‑1711850 | tacaaaagcggcaaaaagcagagacaaaaaacccc > 1:11859613‑M1/35‑35 (MQ=255) tacaaaagcggcaaaaagcagagacaaaaaacccc > 1:10114827‑M1/35‑35 (MQ=255) tacaaaagcggcaaaaagcagagacaaaaaacccc > 1:6971690‑M1/35‑35 (MQ=255) tacaaaagcggcaaaaagcagagacaaaaaacccc > 1:9104615‑M1/35‑35 (MQ=255) tacaaaagcggcaaaaagcagagacaaaaaacccc < 1:1085841‑M1/1‑1 (MQ=255) cccaccaAAAAGACCCAGAAAACAGCGAAAAAAgc < 1:4099162/34‑1 (MQ=255) cccaccaAAAAGACCCAGAAAACAGCGAAAAAAgc < 1:3749853/34‑1 (MQ=255) accaccAAAAAGACCCAGAAAACAGCGAAAAAAgc > 1:17318677/1‑35 (MQ=255) accaccAAAAAGACCCAGAAAACAGCGAAAAAAgc > 1:10536220/1‑35 (MQ=255) accaccAAAAAGACCCAGAAAACAGCGAAAAAAgc > 1:1361217/1‑35 (MQ=255) accacaAAAAAGACCCAGAAAACAGCGAAAAAAgc < 1:3790287/35‑1 (MQ=255) ccaccaAAAAGACCCAGAAAACAGCGAAAAAAgcc < 1:18549198/35‑1 (MQ=255) ccaccaAAAAGACCCAGAAAACAGCGAAAAAAgcc < 1:19983376/35‑1 (MQ=255) ccaccaAAAAGACCCAGAAAACAGCGAAAAAAgcc > 1:8166390/1‑35 (MQ=255) acaaaagcggcaaaaagcagagacaaaaaatcccc > 1:18711594‑M1/34‑35 (MQ=255) acaaaagcggcaaaaagcagagacaaaaaaccccc < 1:7889722‑M1/2‑1 (MQ=255) acaaaagcggcaaaaagcagagacaaaaaaccccc < 1:14192284‑M1/2‑1 (MQ=255) acaaaagcggcaaaaagcagagacaaaaaaccccc < 1:13156310‑M1/2‑1 (MQ=255) caaaagcggcaaaaagcagagacaaaaaacccCCg > 1:11292616‑M1/33‑35 (MQ=255) caaaagcggcaaaaagcagagacaaaaaacccCCg < 1:14094366‑M1/3‑1 (MQ=255) caaaagcggcaaaaagcagagacaaaaaacccCCg > 1:14400591‑M1/33‑35 (MQ=255) aaaagctgcaaaaagcagagacaaaaaacccCCGc < 1:11967168‑M1/4‑1 (MQ=255) aaaagcggcaaaaagcagagacaaaaaacccCCGc < 1:6901862‑M1/4‑1 (MQ=255) aaaagcggcaaaaagcagagacaaaaaacccCCGc < 1:1826543‑M1/4‑1 (MQ=255) aaaagcggcaaaaagcagagacaaaaaacccCCGc < 1:10420586‑M1/4‑1 (MQ=255) aaaagcggcaaaaagcagagacaaaaaacccCCGc > 1:12247156‑M1/32‑35 (MQ=255) aaaagcggcaaaaagcagagacaaaaaacccCCGc < 1:12485322‑M1/4‑1 (MQ=255) ccaAAAAGACCCAGAAAACAGCGAAAAAAgccgcc > 1:9273840/1‑35 (MQ=255) aaaaaGACCCAGAAAACAGCGAAAAAAGCCGCCAg > 1:17851500/1‑35 (MQ=255) aaaaGACCCAGAAAACAGCGAAAAAAGCCGCCAGt > 1:4204879/1‑35 (MQ=255) aaaaGACCCAGAAAACAGCGAAAAAAGCCGCCAGt > 1:5112106/1‑35 (MQ=255) aaaaGACCCAGAAAACACCGAAAAAAGCCGCCAGt > 1:2778724/1‑35 (MQ=255) aaaGACCCAGAAAACAGCGAAAAAAGCCGCCAGTa > 1:12117662/1‑35 (MQ=255) aaGACCCAGAAAACAGCGAAAAAAGCCGCCAGTaa > 1:18727783/1‑35 (MQ=255) aaGACCCAGAAAACAGCGAAAAAAGCCGCCAGTaa > 1:16482668/1‑35 (MQ=255) aaGACCCAGAAAACAGCGAAAAAAGCCGCCAGTaa > 1:7178373/1‑35 (MQ=255) gACCCAGAAAACAGCGAAAAAAGCCGCCAGTaaaa > 1:3908225/1‑35 (MQ=255) gACCCAGAAAACAGCGAAAAAAGCCGCCAGTaaaa > 1:14553738/1‑35 (MQ=255) aCCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAg > 1:491871/1‑35 (MQ=255) cccAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGt > 1:18873707/1‑35 (MQ=255) cccAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGt > 1:7434326/1‑35 (MQ=255) ccAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTa > 1:3993354/1‑35 (MQ=255) ccAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTa > 1:19199356/1‑35 (MQ=255) ccAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTa > 1:11678068/1‑35 (MQ=255) cAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTAc > 1:9075/1‑35 (MQ=255) aGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACg > 1:16067119/1‑35 (MQ=255) aGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACg > 1:3946188/1‑35 (MQ=255) gAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGa > 1:16295186/1‑35 (MQ=255) aaaaCAGCGAAAAAAGCCGCCAGTAAAAGTACGAc > 1:11940257/1‑35 (MQ=255) aaaaCAGCGAAAAAAGCCGCCAGTAAAAGTACGAc > 1:7627611/1‑35 (MQ=255) aaaCAGCGAAAAAAGCCGCCAGTAAAAGTACGAcc > 1:4669436/1‑35 (MQ=255) aaCAGCGAAAAAAGCCGCCAGTAAAAGTACGACCa > 1:4927974/1‑35 (MQ=255) aaCAGCGAAAAAAGCCGCCAGTAAAAGTACGACCa > 1:15101659/1‑35 (MQ=255) aaCAGCGAAAAAAGCCGCCAGTAAAAGTACGACCa > 1:8350708/1‑35 (MQ=255) aaCAGCGAAAAAAGCCGCCAGTAAAAGTAAGACCa > 1:19561094/1‑35 (MQ=255) aCAGCGAAAAAAGCCGCCAGTAAAAGTACGACCaa > 1:5810728/1‑35 (MQ=255) aCAGCGAAAAAAGCCGCCAGTAAAAGTACGACCaa > 1:3483132/1‑35 (MQ=255) aCAGCGAAAAAAGCCGCCAGTAAAAGTACGACAaa > 1:6887468/1‑35 (MQ=255) cAGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaa > 1:9800568/1‑35 (MQ=255) cAGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaa > 1:2151446/1‑35 (MQ=255) cAGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaa > 1:19779522/1‑35 (MQ=255) aacaaaaaccccCCGCCAGTAAAAGTACGACCaaa > 1:18892336‑M1/13‑35 (MQ=255) aaaaaaaaacccCCGCCAGTAAAAGTACGACCaaa > 1:15917235‑M1/13‑35 (MQ=255) gaaaaaaacccCCGCCAGTAAAAGTACGACCaaaa > 1:2390807‑M1/12‑35 (MQ=255) aaaaaaaacccCCGCCAGTAAAAGTACGACCaaaa > 1:10109490‑M1/12‑35 (MQ=255) aGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaaa > 1:11196861/1‑35 (MQ=255) aGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaaa > 1:16806814/1‑35 (MQ=255) aGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaaa > 1:17654817/1‑35 (MQ=255) aGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaaa > 1:17367526/1‑35 (MQ=255) agaaaaacccCCGCCAGTAAAAGTACGACCAAAAg > 1:18019015‑M1/11‑35 (MQ=255) aaaaaaacccCCGCCAGTAAAAGTACGACCAAAAg > 1:11446062‑M1/11‑35 (MQ=255) aaaaaaacccCCGCCAGTAAAAGTACGACCAAAAg > 1:17592448‑M1/11‑35 (MQ=255) cGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGc > 1:6092394/1‑35 (MQ=255) aaaaaacccCCGCCAGTAAAAGTACGACCAAAAGc > 1:2061880‑M1/10‑35 (MQ=255) aaaaaacccCCGCCAGTAAAAGTACGACCAAAAGc > 1:12825964‑M1/10‑35 (MQ=255) aaaaaaaccCCGCCAGTAAAAGTACGACCAAAAGc > 1:8998147‑M1/10‑35 (MQ=255) gAAAAAAGCCGCCATTAAAAGTACGACCAAAAGCa > 1:16881824/1‑35 (MQ=255) gAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCa > 1:16143023/1‑35 (MQ=255) aaaaaaGCCGCCAGTAAAAGTACGACCAAAAGCaa > 1:1571311/1‑35 (MQ=255) aaaaccCCGCCAGTAAAAGTACGACCAAAAGCaaa > 1:10674026‑M1/7‑35 (MQ=255) aaaaaGCCGCCAGTAAAAGTACGACCAAAAGCaaa > 1:7368372/1‑35 (MQ=255) acaccCCGCCAGTAAAAGTACGACCAAAAGCaaaa > 1:2284617‑M1/6‑35 (MQ=255) aaaaGCCGCCAGTAAAAGTACGACCAAAAGCaaaa > 1:9903574/1‑35 (MQ=255) aaaaGCCGCCAGTAAAAGTACGACCAAAAGCaaaa > 1:1777618/1‑35 (MQ=255) caccCCGCCAGTAAAAGTACGACCAAAAGCAAAAc > 1:6628391‑M1/5‑35 (MQ=255) aaccCCGCCAGTAAAAGTACGACCAAAAGCAAAAc > 1:14439492‑M1/5‑35 (MQ=255) aaaGCCGCCAGTAAAAGTACGACCAAAAGCAAAAc > 1:8595281/1‑35 (MQ=255) aaaGCCGCCAGTAAAAGTACGACCAAAAGCAAAAc > 1:19726489/1‑35 (MQ=255) cccCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc > 1:15682730‑M1/4‑35 (MQ=255) cccCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc > 1:13388816‑M1/4‑35 (MQ=255) cccCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc > 1:19009382‑M1/4‑35 (MQ=255) cccCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc > 1:6335699‑M1/4‑35 (MQ=255) accCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc > 1:1467716‑M1/4‑35 (MQ=255) aaGCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc > 1:5415421/1‑35 (MQ=255) aaGCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc > 1:4860163/1‑35 (MQ=255) aGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCg > 1:719900/1‑35 (MQ=255) aGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCg > 1:6048659/1‑35 (MQ=255) gccgccAGTAAAAGTACGACCAAAAGCAAAACCGc > 1:8890147/1‑35 (MQ=255) gccgccAGTAAAAGTACGACCAAAAGCAAAACCGc > 1:19249157/1‑35 (MQ=255) gccgccAGTAAAAGTACGACCAAAAGCAAAACCGc > 1:19389175/1‑35 (MQ=255) | ACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCT > REL606/1711782‑1711850 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |