New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1947885 =81 (0.790)20 (0.200) 9/46 NT 16.6% coding (250/861 nt) cheR chemotaxis regulator, protein‑glutamate methyltransferase
?REL606 = 3428485 123 (1.250)coding (671/1338 nt) yhfM predicted fructoselysine transporter

Only 100 of 167 total aligned reads displayed.

GCCGTCAGATTCGTGGTCAGCGAATTGATAAACGCCTGCCACTCACCGCTGTGCTGATTAGATTCCAGC  >  REL606/1947851‑1947919
                                  |                                  
gCCGTCAGATTCGTGGTCAGCGAATTGATAAACGc                                    <  1:14287788/35‑1 (MQ=255)
gCCGTCAGATTCGTGGTCAGCGAATTGATAAACGc                                    <  1:13343731/35‑1 (MQ=255)
gCCGTCAGATTCGTGGTCAGCGAATTGATAAACGc                                    >  1:12761939/1‑35 (MQ=255)
gCCGTCAGATTCGTGGTCAGCGAATTGATAAAAGc                                    <  1:19349242/35‑1 (MQ=255)
ctatctgttatatgaccggcgaaattaaaaacccc                                    >  1:16928432‑M1/35‑35 (MQ=255)
 ccGTCAGATTCGTGGTCAGCGAATTGATAAACGcc                                   <  1:819623/35‑1 (MQ=255)
 ccGTCAGATTCGTGGTCAGCGAATTGATAAACGcc                                   >  1:1540271/1‑35 (MQ=255)
  cGTCAGATTCGTGGTCAGCGAATTGATAAACGCCt                                  >  1:1832738/1‑35 (MQ=255)
  cGTCAGATTAGTGGTCAGCGAATTGATAAACGCCt                                  <  1:8386505/35‑1 (MQ=255)
   gTCAGATTCGTGGTCAGCGAATTTATAAACGCCTg                                 >  1:9799048/1‑35 (MQ=255)
   gTCAGATTCGTGGTCAGCGAATTGATAAACGCCTg                                 <  1:17031244/35‑1 (MQ=255)
   gTCAGATTCGTGGTCAGCGAATTGATAAACGCCTg                                 >  1:15417145/1‑35 (MQ=255)
   gTCAGATTCGTGGTCAGCGAATTGATAAACGCCTg                                 >  1:13431393/1‑35 (MQ=255)
    tCAGATTCGTTGTCAGCGAATTGATAAACGCCTGc                                >  1:10102635/1‑35 (MQ=255)
     cAGATTCGTGGTCAGCGAATTGATAAACTCCTGcc                               >  1:14575660/1‑35 (MQ=255)
     cAGATTCGTGGTCAGCGAATTGATAAACGCCTGcc                               >  1:4282682/1‑35 (MQ=255)
     cAGATTCGTGGTCAGCGAATTGATAAACGCCTGcc                               <  1:12272459/35‑1 (MQ=255)
      aGATTCGTGGTCAGCGAATTGATAAACGCCTGCCa                              >  1:15268128/1‑35 (MQ=255)
       gATTCTTGGTCAGCGAATTGATAAACGCCTGCCAc                             >  1:2007528/1‑35 (MQ=255)
       gATTCGTGGTCAGCGAATTGATAAACGCCTGCCAc                             >  1:6146457/1‑35 (MQ=255)
       gATTCGTGGTCAGCGAATTGAAAAACGCCTGCCAc                             >  1:2994377/1‑35 (MQ=255)
        aTTCGTGGTCAGCGAATTGATAAACGCCTGCCCCt                            >  1:19558984/1‑35 (MQ=255)
        aTTCGTGGTCAGCGAATTGATAAACGCCTGCCACt                            >  1:18404377/1‑35 (MQ=255)
         ttCGTGGTCAGCGAATTGATAAACGCCTGCCACTc                           >  1:8468461/1‑35 (MQ=255)
         ttCGTGGTCAGCGAATTGATAAACGCCTGCCACTc                           >  1:7477598/1‑35 (MQ=255)
          tCGTGGTCAGCGAATTGATAAACGCCTGCCACTCa                          >  1:5438646/1‑35 (MQ=255)
          tCGTGGTCAGCGAATTGATAAACGCCTGCCACTCa                          >  1:422733/1‑35 (MQ=255)
           cGTGGTCAGCTAATTGATAAACGCCTGCCACTCAc                         >  1:11180747/1‑35 (MQ=255)
           cGTGGTCAGCGAATTGATAAACGCCTGCCACTCAc                         >  1:18946682/1‑35 (MQ=255)
           cGTGGTCAGCGAATTGATAAACGCCTGCCACTCAc                         >  1:13850638/1‑35 (MQ=255)
           cGTGGTCAGCGAATTGATAAACGCCTGCCACTCAc                         >  1:923070/1‑35 (MQ=255)
            gTGGTCAGCGAATTGATAAACGCCTGCCACTCAcc                        >  1:7587414/1‑35 (MQ=255)
            gTGGTCAGCGAATTGATAAACGCCTGCCACTCAcc                        >  1:16006972/1‑35 (MQ=255)
            gTGGTCAGCGAATTGATAAACGCCTGCCACTCAcc                        >  1:16578953/1‑35 (MQ=255)
              ggTCAGCGAATTGATAAACGCCTGCCACTCACCGc                      >  1:14209349/1‑35 (MQ=255)
              ggTCAGCGAATTGATAAACGCCTGCCACTCACCGc                      >  1:12816257/1‑35 (MQ=255)
               gTCAGCGAATTGATAAACTCCTGCCACTCACCGCt                     >  1:18925780/1‑35 (MQ=255)
               gTCAGCGAATTGATAAACGCCTGCCACTCACCGCt                     >  1:9942009/1‑35 (MQ=255)
               gTCAGCGAATTGATAAACGCCTGCCACTCACCGCt                     >  1:5152402/1‑35 (MQ=255)
               gTCAGCGAATTGATAAACGCCTGCCACTCACCGCt                     >  1:764996/1‑35 (MQ=255)
               gTCAGCGAATTGATAAACGCCTGCCACTCACCGCt                     >  1:18389281/1‑35 (MQ=255)
               gTCAGCGAATTGATAAACGCCTGCCACTCACCGCt                     >  1:14049889/1‑35 (MQ=255)
                tCAGCGAATTTATAAACGCCTGCCACTCACCGCtg                    >  1:10137280/1‑35 (MQ=255)
                  aGCGAATTGATAAACGCCTGCCACTCACCGCtgtg                  >  1:14505565/1‑35 (MQ=255)
                  aGCGAATTGATAAACGCCTGCCACTCACCGCtgtg                  >  1:8833981/1‑35 (MQ=255)
                   gCGAATTGATAAACGCCTGCCACTCACCGCTGTGc                 >  1:11395789/1‑35 (MQ=255)
                    cGAATTGATAAACGCCTGCCACTCACCGCTGTGCt                >  1:370375/1‑35 (MQ=255)
                    cGAATTGATAAACGCCTGCCACTCACCGCTGTGCt                >  1:6300819/1‑35 (MQ=255)
                     gAATTGATAAACGCCTGCCACTCACCGCTGTGCTg               >  1:17571827/1‑35 (MQ=255)
                     gAATTGATAAACGCCTGCCACTCACCGCTGTGCTg               >  1:11160074/1‑35 (MQ=255)
                     gAATTGATAAACGCCTGCCACTCACCGCTGTGCTg               >  1:12768260/1‑35 (MQ=255)
                     gAATTGATAAACGCCTGCCACTCACCGCTGTGCTg               >  1:18598590/1‑35 (MQ=255)
                     gAATTGATAAACGCCTGCCACTCACCGCTGTGCTg               >  1:7364055/1‑35 (MQ=255)
                      aattaaaaacccCCTGCCACTCACCGCTGTGCTGa              >  1:519394‑M1/13‑35 (MQ=255)
                      aaTTGATAAACGCCTGCCACTCACCGCTGTGCTGa              >  1:15048392/1‑35 (MQ=255)
                      aaTTGATAAACGCCTGCCACTCACCGCTGTGCTGa              >  1:6827161/1‑35 (MQ=255)
                      aaTTGATAAACGCCTGCCACTCACCGCTGTGCTGa              >  1:13890021/1‑35 (MQ=255)
                       attaaaaacccCCTGCCACTCACCGCTGTGCTGAt             >  1:8924742‑M1/12‑35 (MQ=255)
                       ataaaaaacccCCTGCCACTCACCGCTGTGCTGAt             >  1:946725‑M1/12‑35 (MQ=255)
                       aTTTATAAACGCCTGCCACTCACCGCTGTGCTGAt             >  1:10689193/1‑35 (MQ=255)
                       aTTGATAACCCCCTGCCACTCACCGCTGTGCTGAt             <  1:20613786/35‑1 (MQ=25)
                       aTTGATAAACGCCTGCCACTCACCGCTGTGCTGAt             >  1:7163962/1‑35 (MQ=255)
                        ttaaaaacccCCTGCCACTCACCGCTGTGCTGAtt            >  1:11470814‑M1/11‑35 (MQ=255)
                        ttGATAAACGCCTGCCACTCACCGCTGTGCTGAtt            >  1:2475155/1‑35 (MQ=255)
                        ttGATAAACGCCTGCCACTCACCGCTGTGCTGAtt            >  1:539110/1‑35 (MQ=255)
                        ttGATAAACGCCTGCCACTCACCGCTGTGCTGAtt            >  1:3761603/1‑35 (MQ=255)
                         tgaaaacccCCTGCCACTCACCGCTGTGCTGATTa           >  1:20102563‑M1/10‑35 (MQ=255)
                         taaaaacccCCTGCCACTCACCGCTGTGCTGATTa           >  1:1249118‑M1/10‑35 (MQ=255)
                         tGATAAACGCCTGCCACTCACCGCTGTGCTGATTa           >  1:13632873/1‑35 (MQ=255)
                         tGATAAACGCCTGCCACTCACCGCTGTGCTGATTa           >  1:11627139/1‑35 (MQ=255)
                          gaaaccccCCTGCCACTCACCGCTGTGCTGATTAg          >  1:16778402‑M1/9‑35 (MQ=255)
                          aaaaacccCCTGCCACTCACCGCTGTGCTGATTAg          >  1:4073277‑M1/9‑35 (MQ=255)
                          aaaaacccCCTGCCACTCACCGCTGTGCTGATTAg          >  1:15671262‑M1/9‑35 (MQ=255)
                           aaaccccCCTGCCACTCACCGCTGTGCTGATTAGa         >  1:10404092‑M1/8‑35 (MQ=255)
                           aaaacccCCTGCCACTCACCGCTGTGCTGATTAGa         >  1:17712842‑M1/8‑35 (MQ=255)
                            tAAACGCCTGCCACTCACCGCTGTGCTGATTAGAt        >  1:1120766/1‑35 (MQ=255)
                            aaacccCCTGCCACTCACCGCTGTGCTGATTAGAt        >  1:6734410‑M1/7‑35 (MQ=255)
                            aaacccCCTGCCACTCACCGCTGTGCTGATTAGAt        >  1:2645251‑M1/7‑35 (MQ=255)
                             aacccCCTGCCACTCACCGCTGTGCTGATTAGAtt       >  1:19479692‑M1/6‑35 (MQ=255)
                              ccccCCTGCCACTCACCGCTGTGCTGATTAGATTc      >  1:1560105‑M1/5‑35 (MQ=255)
                              acccCCTGCCACTCACCGCTGTGCTGATTAGATTc      >  1:14706172‑M1/5‑35 (MQ=255)
                              aaCGCCTGCCACTCACCGCTGTGCTGATTAGATTc      >  1:1978775/1‑35 (MQ=255)
                              aaCGCCTGCCACTCACCGCTGTGCTGATTAGATTc      >  1:3896033/1‑35 (MQ=255)
                               cccCCTGCCACTCACCGCTGTGCTGATTAGATTcc     >  1:12033896‑M1/4‑35 (MQ=255)
                               aCGCCTGCCACTCACCGCTGTGCTGATTAGATTcc     >  1:1723561/1‑35 (MQ=255)
                                ccCCTGCCACTCACCGCTGTGCTGATTAGATTCCa    >  1:7315372‑M1/3‑35 (MQ=255)
                                ccCCTGCCACTCACCGCTGTGCTGATTAGATTCCa    >  1:6788362‑M1/3‑35 (MQ=255)
                                ccCCTGCCACTCACCGCTGTGCTGATTAGATTCCa    >  1:2870560‑M1/3‑35 (MQ=255)
                                ccCCTGCCACTCACCGCTGTGCTGATTAGATTCCa    >  1:8954067‑M1/3‑35 (MQ=255)
                                cGCCTGCCACTCACCGCTGTGCTGATTAGATTCCa    >  1:7722272/1‑35 (MQ=255)
                                cGCCTGCCACTCACCGCTGTGCTGATTAGATTCCa    >  1:16977631/1‑35 (MQ=255)
                                 gCCTGCCACTCACCGCTGTGCTGATTAGATTCCAg   >  1:5516430/1‑35 (MQ=255)
                                 cCCTGCCACTCACCGCTGTGCTGATTAGATTCCAg   >  1:7575757‑M1/2‑35 (MQ=255)
                                 cCCTGCCACTCACCGCTGTGCTGATTAGATTCCAg   >  1:7904315‑M1/2‑35 (MQ=255)
                                 cCCTGCCACTCACCGCTGTGCTGATTAGATTCCAg   >  1:10677923‑M1/2‑35 (MQ=255)
                                  CCTGCCACTCACCGCTGTGCTGATTAGATTCCAGc  <  1:8707681‑M1/35‑1 (MQ=255)
                                  CCTGCCACTCACCGCTGTGCTGATTAGATTCCAGc  <  1:5617776‑M1/35‑1 (MQ=255)
                                  CCTGCCACTCACCGCTGTGCTGATTAGATTCCAGc  >  1:2955896‑M1/1‑35 (MQ=255)
                                  CCTGCCACTCACCGCTGTGCTGATTAGATTCCAGc  <  1:12208597‑M1/35‑1 (MQ=255)
                                  CCTGCCACTCACCGCTGTGCTGATTAGATTCCAGc  <  1:3522224‑M1/35‑1 (MQ=255)
                                  |                                  
GCCGTCAGATTCGTGGTCAGCGAATTGATAAACGCCTGCCACTCACCGCTGTGCTGATTAGATTCCAGC  >  REL606/1947851‑1947919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.