New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2095315 =91 (0.890)5 (0.070) 3/34 NT 6.2% coding (744/1416 nt) yegB multidrug efflux system protein
?REL606 2237509 = 87 (1.200)intergenic (+34/+69) proL/yejO tRNA‑Pro/predicted autotransporter outer membrane protein

Only 100 of 104 total aligned reads displayed.

TACGAGTACGGAACAGTTTCAGACTGAACAGGGCACGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2095355‑2095315
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggttgGTTTTTTTATATCTGCAATTAATTCGATAAACAG  >  REL606/2237509‑2237542
                                                                           
TACGAGTACGGAACAGTTTCAGACTGAACAGGGCA                                          <  1:3004193/35‑1
TACGAGTACGGAACAGTTTCAGACTGAACAGGGCA                                          >  1:7649906/1‑35
TACGAGTACGGAACAGTTTCAGACTGAACAGGGCA                                          <  1:1345408/35‑1
TACGAGTACGGAACAGTTTCAGACTGAACAGGGCA                                          >  1:11377216/1‑35
 accAGTACGGAACAGTTTCAGACTGAACAGGGCAC                                         <  1:13194873/32‑1
 ACGAGTACGGAACAGTTTCAGACTGAACAGGGCAC                                         >  1:16893549/1‑35
 ACGAGTACGGAACAGTTTCAGACTGAACAGGGCAC                                         >  1:18062038/1‑35
 ACGAGTACGGAACAGTTTCAGACTGAACAGGGCAC                                         <  1:15552662/35‑1
 ACGAGTACGGAACAGTTTCAGACTGAACAGGGCAC                                         >  1:4540093/1‑35
 ACGAGTACGGAACAGTTTCAGACTGAACAGGGCAC                                         >  1:4581323/1‑35
 ACGAGTACGGAACAGTTTCAGACTGAACAGGGCAC                                         <  1:10573846/35‑1
 ACGAGTACGGAACAGTTTCAGACTGAACAGGGCAC                                         <  1:11650861/35‑1
 ACGAGTACGGAACAGTTTCAGACTGAACAGGGCAC                                         <  1:9117664/35‑1
 ACGAGTACGCAACAGTTTCAGACTGAACAGGGCAC                                         >  1:19186679/1‑35
  CGAGTACGGAACAGTTTCAGACTGAACAGGGCACG                                        >  1:11915357/1‑35
  CGAGTACGGAACAGTTTCAGACTGAACAGGGCACG                                        <  1:10685148/35‑1
  CGAGTACGGAACAGTTTCAGACTGAACAGGGCACG                                        >  1:5774356/1‑35
  CGAGTACGGAACAGTTTCAGACTGAACAGGGCACG                                        >  1:5578394/1‑35
   GAGTACGGAACAGTTTCAGACTGAACAGGGCACGG                                       >  1:14720856/1‑35
   GAGTACGGAACAGTTTCAGACTGAACAGGGCACGG                                       <  1:17969401/35‑1
   GAGTACGGAACAGTTTCAGACTGAACAGGGCACGG                                       >  1:14024768/1‑35
   GAGTACGGAACAGTTTCAGACTGAACAGGGCACGG                                       <  1:17353235/35‑1
   GAGTACGGAACAGTTTCAGACTGAACAGGGCACGG                                       >  1:6202537/1‑35
    AGTACGGAACAGTTTCAGACTGAACAGGGCACGGT                                      <  1:36964/35‑1
     GTACGGAACAGTTTCAGACTGAACAGGGCACGGTT                                     >  1:11161241/1‑35
     GTACGGAACAGTTTCAGACTGAACAGGGCACGGTT                                     <  1:6626307/35‑1
     GTACGGAACAGTTTCAGACTGAACAGGGCACGGTT                                     <  1:19512827/35‑1
     GTACGGAACAGTTTCAGACTGAACAGGGCACGGTT                                     >  1:638032/1‑35
      TACGGAACAGTTTCAGACTGAACAGGGCACGGTTG                                    >  1:10599307/1‑35
      TACGGAACAGTTTCAGACTGAACAGGGCACGGTTG                                    >  1:3974386/1‑35
      TACGGAACAGTTTCAGACTGAACAGGGCACGGTTG                                    <  1:451315/35‑1
      TACGGAACAGTTTCAGACTGAACAGGGCACGGTTG                                    >  1:13515114/1‑35
       accGAACAGTTTCAGACTGAACAGGGCACGGTTGG                                   >  1:18294148/4‑35
       ACGGAACAGTTTCAGACTGAACAGGGCACGGTTGG                                   >  1:14313173/1‑35
       ACGGAACAGTTTCAGACTGAACAGGGCACGGTTGG                                   >  1:6561125/1‑35
        CGGAACAGTTTCAGACTGAACAGGGCACGGTTGGg                                  >  1:20196824/1‑34
        CGGAACAGTTTCAGACTGAACAGGGCACGGTTGGT                                  >  1:18409361/1‑35
        CGGAACAGTTTCAGACTGAACAGGGCACGGTTGGT                                  >  1:9254696/1‑35
         GGAACAGTTTCAGACTGAACAGGGCACGGTTGGgt                                 >  1:3419362/1‑33
         GGAACAGTTTCAGACTGAACAGGGCACGGTTGGTa                                 >  1:4503982/1‑34
         GGAACAGTTTCAGACTGAACAGGGCACGGTTGGTa                                 >  1:18105907/1‑34
          GAACAGTTTCAGACTGAACAGGGCACGGTTGGTat                                >  1:7319990/1‑33
          GAACAGTTTCAGACTGAACAGGGCACGGTTGGTat                                >  1:13086870/1‑33
           AACAGTTTCAGACTGAACAGGGCACGGTTGGTATT                               >  1:4398041/1‑35
           AACAGTTTCAGACTGAACAGGGCACGGTTGGTATT                               >  1:4710812/1‑35
            ACAGTTTCAGACTGAACAGGGCACGGTTGGTTTTT                              >  1:65060/1‑35
            ACAGTTTCAGACTGAACAGGGCACGGTTGGTATTT                              >  1:15265119/1‑35
             CAGTTTCAGACTGAACAGGGCACGGTTGGTTTTTT                             >  1:6996649/1‑35
              AGTTTCAGACTGAACAGGGCACGGTTGGTTTTTTT                            >  1:8395813/1‑35
                TTTCAGACTGAACAGGGCACGGTTGGTTTTTTTgg                          >  1:1281168/1‑33
                                  ACGGTTGGTTTTTTTATATCTGCAATTAATTCGAT        <  1:307916/35‑1
                                  ACGGTTGGTTTTTTTATATCTGCAATTAATTCGAT        <  1:3404385/35‑1
                                  ACGGTTGGTTTTTTTATATCTGCAATTAATTCGAT        >  1:16024168/1‑35
                                  ACGGTTGGTTTTTTTATATCTGCAATTAATTCGAT        >  1:16519847/1‑35
                                  ACGGTTGGTTTTTTTATATCTGCAATTAATTCGAT        >  1:17995204/1‑35
                                  ACGGTTGGTTTTTTTATATCTGCAATTAATTCGAT        <  1:6888908/35‑1
                                  ACGGTTGGTTTTTTTATATCTGCAATTAATTCGAT        >  1:8251212/1‑35
                                  ACGGTTGGTTTTTTTATATCAGCAATTAATTCGAT        >  1:1538121/1‑35
                                  ACGGTTGGGTTTTTTATATCTGCAATTAATTCGAT        >  1:14913557/1‑35
                                   CGGTTGGTTTTTTTATATCTGCAATTAATTCGATA       >  1:14333874/1‑35
                                   CGGTTGGTTTTTTTATATCTGCAATTAATTCGATA       <  1:12438530/35‑1
                                   CGGTTGGTTTTTTTATATCTGCAATTAATTCGATA       <  1:10849157/35‑1
                                   CGGTTGGTTTTTTTATATCTGCAATTAATTCGATA       >  1:1057540/1‑35
                                   CGGTTGGTTTTTTTATATCTGCAATTAATTCGATA       <  1:36665/35‑1
                                   CGGTTGGTTTTTTTATATCTGCAATTAATTCGATA       <  1:16264932/35‑1
                                   CGGTTGGTTTTTTTATATCTGCAATTAATTCGATA       >  1:18604130/1‑35
                                    GGTTGGTTTTTTTATATCTGCAATTAATTCGATAA      <  1:7767437/35‑1
                                    GGTTGGTTTTTTTATATCTGCAATTAATTCGATAA      >  1:11531017/1‑35
                                    GGTTGGTTTTTTTATATCTGCAATTAATTCGATAA      >  1:11781561/1‑35
                                    GGTTGGTTTTTTTATATCTGCAATTAATTCGATAA      >  1:6397897/1‑35
                                    GGTTGGTTTTTTTATATCTGCAATTAATTCGATAA      <  1:6062511/35‑1
                                    GGTTGGTTTTTTTATATCTGCAATTAATTCGATAA      >  1:5140690/1‑35
                                    GGTTGGTTTTTTTATATCTGCAATTAATTCGATAA      <  1:17077031/35‑1
                                    GGTTGGTTTTTTTATATCTGCAATTAATTCGATAA      >  1:15500457/1‑35
                                    GGTTGGTTTTTTTATATCTGCAATTAATTCGATAA      >  1:9216186/1‑35
                                     GTTGGTTTTTTTATATCTGCAATTAATTCGATAAA     <  1:11004850/35‑1
                                     GTTGGTTTTTTTATATCTGCAATTAATTCGATAAA     >  1:9019755/1‑35
                                     GTTGGTTTTTTTATATCTGCAATTAATTCGATAAA     <  1:17492287/35‑1
                                     GTTGGTTTTTTTATATCTGCAATTAATTCGATAAA     >  1:8092214/1‑35
                                      TTGGTTTTTTTATATCTGCAATTAATTCGATAAAC    <  1:13375273/35‑1
                                      TTGGTTTTTTTATATCTGCAATTAATTCGATAAAC    <  1:344660/35‑1
                                      TTGGTTTTTTTATATCTGCAATTAATTCGATAAAC    >  1:15962640/1‑35
                                      TTGGTTTTTTTATATCTGCAATTAATTCGATAAAC    <  1:6954425/35‑1
                                       TGGTTTTTTTATATCTGCAATTAATTCGATAAACA   >  1:16756586/1‑35
                                       TGGTTTTTTTATATCTGCAATTAATTCGATAAACA   >  1:4399818/1‑35
                                       TGGTTTTTTTATATCTGCAATTAATTCGATAAACA   >  1:20225059/1‑35
                                       TGGTTTTTTTATATCTGCAATTAATTCGATAAACA   <  1:18867536/35‑1
                                       TGGTTTTTTTATATCTGCAATTAATTCGATAAACA   >  1:19359347/1‑35
                                        GGTTTTTTTATATCTGCAATTAATTCGATAAACAG  >  1:17387306/1‑35
                                        GGTTTTTTTATATCTGCAATTAATTCGATAAACAG  >  1:17009291/1‑35
                                        GGTTTTTTTATATCTGCAATTAATTCGATAAACAG  <  1:7722759/35‑1
                                        GGTTTTTTTATATCTGCAATTAATTCGATAAACAG  >  1:7682232/1‑35
                                        GGTTTTTTTATATCTGCAATTAATTCGATAAACAG  <  1:17427081/35‑1
                                        GGTTTTTTTATATCTGCAATTAATTCGATAAACAG  <  1:1672449/35‑1
                                        GGTTTTTTTATATCTGCAATTAATTCGATAAACAG  <  1:6619667/35‑1
                                        GGTTTTTTTATATCTGCAATTAATTCGATAAACAG  >  1:16656369/1‑35
                                        GGTTTTTTTATATCTGCAATTAATTCGATAAACAG  >  1:12647544/1‑35
                                        GGTTTTTTTATATCTGCAATTAATTCGATAAACAG  >  1:5086809/1‑35
                                        GGTTTTTTTATATCTGCAATTAATTCGATAAACAG  >  1:15442679/1‑35
                                        GGTTTTTTTATATCTGCAATTAATTCGATAAACAG  >  1:434277/1‑35
                                                                           
TACGAGTACGGAACAGTTTCAGACTGAACAGGGCACGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2095355‑2095315
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggttgGTTTTTTTATATCTGCAATTAATTCGATAAACAG  >  REL606/2237509‑2237542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.