New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 220422468 (0.660)16 (0.200) 4/38 NT 14.9% coding (1109/1251 nt) yeiJ predicted nucleoside transporter
?REL606 2724133 = 129 (1.590)coding (227/774 nt) srlR DNA‑bindng transcriptional repressor

Only 100 of 176 total aligned reads displayed.

TGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGC  >  REL606/2204190‑2204258
                                  |                                  
   cgcAACCGCAGAAAACGCCCCCACCACCACCCCGa                                 >  1:9700435/1‑35 (MQ=255)
    gcAACCGCAGAAAACGCCCCCACCACCACCCCGAt                                >  1:7844673/1‑35 (MQ=255)
     cAACCGCAGAAAACGCCCCCACCACCACCCCGATa                               >  1:16867805/1‑35 (MQ=255)
      acccGCAGAACCCCCCCCCCCCACCACCCCGATAg                              <  1:17712748/33‑1 (MQ=255)
      aaCCGCAGAAAACGCCCCCACCACCACCCCGATAg                              >  1:4413368/1‑35 (MQ=255)
        ccGCAGAAAACGCCCCCACCACCACCCCGATAGaa                            >  1:8055716/1‑35 (MQ=255)
        ccGCAGAAAACGCCCCCACCACCACCCCGATAGaa                            >  1:13372357/1‑35 (MQ=255)
         cGCAGAAAACGCCCCCACCACCACCCCGATAGAAc                           >  1:10092268/1‑35 (MQ=255)
         cGCAGAAAACGCCCCCACCACCACCCCGATAGAAc                           >  1:13057612/1‑35 (MQ=255)
          gCAGAAAACGCCCCCACCACCACCCCGATAGAAcc                          >  1:10363270/1‑35 (MQ=255)
          gCAGAAAACGCCCCCACCACCACCCCGATAGAAcc                          >  1:10680149/1‑35 (MQ=255)
          gCAGAAAACGCCCCCACCACCACCCCGATAGAAcc                          >  1:9183944/1‑35 (MQ=255)
           cAGAAAACGCCCCCACCACCACCCCGATAGAACCa                         >  1:3200427/1‑35 (MQ=255)
           cAGAAAACGCCCCCACCACCACCCCGATAGAACCa                         >  1:18668214/1‑35 (MQ=255)
           cAGAAAACGCCCCCACCACCACCCCGATAGAACCa                         >  1:10008196/1‑35 (MQ=255)
           aaaaaaaCCCCCCCACCACCACCCCGATAGAACCa                         <  1:4248662/32‑1 (MQ=38)
               aaaCGCCCCCACCACCACCCCGATAGAACCAAAGt                     >  1:16502107/1‑35 (MQ=255)
               aaaCGCCCCCACCACCACCCCGATAGAACCAAAGt                     >  1:12985461/1‑35 (MQ=255)
                 aCGCCCCCACCACCACCCCGATAGAACCAAAGTTa                   >  1:13313819/1‑35 (MQ=255)
                     ccccCCCACCACCCCGATAGAACCAAAGTTAGCGa               <  1:17372139/35‑1 (MQ=255)
                     ccccACCACCACCCCGATAGAACCAAAGTTAGCGa               >  1:10901143/1‑35 (MQ=255)
                     ccccAACACCACCCacaagaaagagctgattgcag               <  1:9642691‑M1/35‑22 (MQ=255)
                      cccCCCACCACCCCGATAGAACCAAAGTTAGCGaa              <  1:5475519/35‑1 (MQ=255)
                      cccATCACCACCCacaagaaagagctgattgcaga              <  1:3447136‑M1/35‑23 (MQ=255)
                      cacacccccacCCCGATAGAACAAAAGTTAGCGaa              <  1:5884427/33‑1 (MQ=21)
                       tcaccaccaccCacaagaaagggctgattgcagaa             <  1:18460529‑M1/34‑24 (MQ=255)
                       tcaccaccaccCacaagaaagagctgattgcagaa             <  1:1740997‑M1/34‑24 (MQ=255)
                       ccaccaccaCCCacaagaaagagctgattgcagaa             <  1:1120109‑M1/35‑24 (MQ=255)
                       ccaccaccaCCCacaagaaagagctgattgcagaa             <  1:12108993‑M1/35‑24 (MQ=255)
                       ccaccaccaCCCacaagaaagagctgattgcagaa             <  1:6544750‑M1/35‑24 (MQ=255)
                       ccaccaccaCCCCGATAGAACCAAAGTTAGCGaaa             >  1:9251125/1‑35 (MQ=255)
                        catcaccacccacaagaaagagctgattgcagaag            <  1:8542538‑M1/32‑25 (MQ=255)
                        catcaccacccacaagaaagagctgattgcagaag            <  1:10436221‑M1/32‑25 (MQ=255)
                        caccaccacCCCGATAGAACCAACGTTAGCGAAAc            >  1:2546964/1‑35 (MQ=255)
                        caccaccacCCCGATAGAACCAAAGTTAGCGAAAc            >  1:8192012/1‑35 (MQ=255)
                        caccaccacCCCGATAGAACCAAAGTTAGCGAAAc            >  1:20505222/1‑35 (MQ=255)
                        caccaccacCCCGATAGAACCAAAGTTAGCGAAAc            >  1:7302032/1‑35 (MQ=255)
                         accaccaccCacaagaaagagctgattgcagaagc           <  1:5664325‑M1/35‑26 (MQ=255)
                         accaccaccCCGATAGAACCAAAGTTAGCGAAAcc           >  1:16032444/1‑35 (MQ=255)
                         acaaccacccacaagaaagagctgattgcagaagc           <  1:3756991‑M1/32‑26 (MQ=255)
                          tcaccacccacaagaaagagctgattgcagaagct          <  1:10118614‑M1/34‑27 (MQ=255)
                          cccccacccacaagaaagagctgattgcagaagct          <  1:15432459‑M1/32‑27 (MQ=255)
                          ccaccaccCacaagaaagagctgattgcagaagct          <  1:4913352‑M1/35‑27 (MQ=255)
                          ccaccaccCCGATAGAACCAAAGTTAGCGAAACCg          <  1:19329319/35‑1 (MQ=255)
                          ccaccaccCCGATAGAACCAAAGTTAGCGAAACCg          <  1:1584781/35‑1 (MQ=255)
                          ccaccaccCCGATAGAACCAAAGTTAGCGAAACCg          >  1:15276073/1‑35 (MQ=255)
                          ccaccaccCCGATAGAACCAAAGTTAGCGAAACCg          >  1:14503940/1‑35 (MQ=255)
                          ccaccaccCCGATAGAAACAAAGTTAGCGAAACCg          <  1:14269662/35‑1 (MQ=255)
                          acaccacccacaagaaagagctgattgcagaagct          <  1:1620751‑M1/34‑27 (MQ=255)
                          acaccacccacaagaaagagctgattgcagaagct          <  1:19724864‑M1/34‑27 (MQ=255)
                           ccccacccacaagaaagagctgattgcagaagctg         <  1:7554545‑M1/33‑28 (MQ=255)
                           caccaccCacaagaaagagctgattgcagaagctg         <  1:5060007‑M1/35‑28 (MQ=255)
                           caccaccCacaagaaagagctgattgcagaagctg         <  1:12295169‑M1/35‑28 (MQ=255)
                           caccaccCCGATAGAACCAAAGTTAGCGAAACCGc         >  1:2347179/1‑35 (MQ=255)
                           caccaccCCGATAGAACCAAAGTTAGCGAAACCGc         >  1:15631413/1‑35 (MQ=255)
                            cccaaccacaagaaagagctgattgcagaagctgc        <  1:3407889‑M1/34‑29 (MQ=255)
                            accgccCacaagaaagagctgattgcagaagctgc        <  1:3608933‑M1/35‑29 (MQ=255)
                            accaccCacaagaaagagctgattgcagaagctgc        <  1:2378930‑M1/35‑29 (MQ=255)
                            accaccCacaagaaagagctgattgcagaagctgc        <  1:7156724‑M1/35‑29 (MQ=255)
                            accaccCacaagaaagagctgattgcagaagctgc        <  1:18071998‑M1/35‑29 (MQ=255)
                            accaccCacaagaaagagctgattgcagaagctgc        <  1:1148497‑M1/35‑29 (MQ=255)
                            accaccCCGATAGAACCAAAGTTAGCGAAACCGca        <  1:11811744/35‑1 (MQ=255)
                            accaccCCGATAGAACCAAAGTTAGCGAAACCGca        >  1:11675324/1‑35 (MQ=255)
                             ccacccacaagaaagagctgattgcagaagctgcc       <  1:8252350‑M1/35‑30 (MQ=255)
                             ccacccacaagaaagagctgattgcagaagctgcc       <  1:10603636‑M1/35‑30 (MQ=255)
                             ccacccacaagaaagagctgattgcagaagctgcc       <  1:15895606‑M1/35‑30 (MQ=255)
                             ccaccCCGATAGAACCAAAGTTAGCGAAACCGcac       >  1:1644565/1‑35 (MQ=255)
                             ccaccCAGATAGAACCAAAGTTAGCGAAACCGcac       <  1:12910899/35‑1 (MQ=255)
                              cccccacaagaaagagctgattgcagaagctgccg      <  1:11721494‑M1/33‑31 (MQ=255)
                              cacccacaagaaagagctgattgcagaagctgccg      >  1:1322899‑M1/1‑5 (MQ=255)
                              cacccacaagaaagagctgattgcagaagctgccg      >  1:4678642‑M1/1‑5 (MQ=255)
                              cacccacaagaaagagctgattgcagaagctgccg      >  1:16153222‑M1/1‑5 (MQ=255)
                              caccCCGATAGAACCAAAGTTAGCGAAACCGcaca      <  1:927235/35‑1 (MQ=255)
                              caccCCGATAGAACCAAAGTTAGCGAAACCGcaca      >  1:7645782/1‑35 (MQ=255)
                              caccCCGATAGAACCAAAGTTAGCGAAACCGcaca      >  1:6305471/1‑35 (MQ=255)
                              caccCCGATAGAACCAAAGTTAGCGAAACCGcaca      <  1:8614367/35‑1 (MQ=255)
                               acccacaagaaagagctgattgcagaatctgccgt     >  1:4581886‑M1/1‑4 (MQ=255)
                               accCCGATAGAACCAAAGTTAGCGAAACCGCACaa     >  1:15312081/1‑35 (MQ=255)
                               accCCGATAGAACCAAAGTTAGCGAAACCGCACaa     <  1:19987528/35‑1 (MQ=255)
                               accCCGATAGAACCAAAGTTAGCGAAACCGCACaa     >  1:20293245/1‑35 (MQ=255)
                                ccccGATAGAACCAAAGTTAGCGAAACCGCACAAc    <  1:14445748/35‑1 (MQ=255)
                                ccccGATAGAACCAAAGTTAGCGAAACCGCACAAc    <  1:10205745/35‑1 (MQ=255)
                                cccacaagaaagagctgattgcagaagctgccgtt    >  1:9844502‑M1/1‑3 (MQ=255)
                                 cccGATAGAACCAAAGTTAGCGAAACCGCACAAcg   <  1:12700801/35‑1 (MQ=255)
                                 cccGATAGAACCAAAGTTAGCGAAACCGCACAAcg   <  1:1766464/35‑1 (MQ=255)
                                 cccGATAGAACCAAAGTTAGCGAAACCGCACAAcg   <  1:8920206/35‑1 (MQ=255)
                                 cccGATAGAACCAAAGTTAGCGAAACAGCACAAcg   <  1:340273/35‑1 (MQ=255)
                                 ccacaagaaagagctgattgcagaagctgccgtta   >  1:6633581‑M1/1‑2 (MQ=255)
                                 ccacaagaaagagctgattgcagaagctgccgtta   >  1:2264338‑M1/1‑2 (MQ=255)
                                 ccacaagaaagagctgattgcagaagctgccgtta   >  1:19168125‑M1/1‑2 (MQ=255)
                                  ccGATAGAACCAAAGTTAGCGAAACCGCACAAcgc  >  1:14415821/1‑35 (MQ=255)
                                  ccGATAGAACCAAAGTTAGCGAAACCGCACAAcgc  <  1:1474217/35‑1 (MQ=255)
                                  ccGATAGAACCAAAGTTAGCGAAACCGCACAAcgc  >  1:15577953/1‑35 (MQ=255)
                                  ccGATAGAACCAAAGTTAGCGAAACCGCACAAcgc  <  1:17078522/35‑1 (MQ=255)
                                  ccGATAGAACCAAAGTTAGCGAAACCGCACAAcgc  <  1:6513460/35‑1 (MQ=255)
                                  ccGATAGAACCAAAGTTAGCGAAACCGCACAAcgc  >  1:6924699/1‑35 (MQ=255)
                                  cacaagaaagagctgattgcagaagctgccgttag  >  1:3776169‑M1/1‑1 (MQ=255)
                                  cacaagaaagagctgattgcagaagctgccgttag  >  1:6205350‑M1/1‑1 (MQ=255)
                                  cacaagaaagagctgattgcagaagctgcagttag  <  1:20231013‑M1/35‑35 (MQ=255)
                                  cacaagaaagagctgattgcagaagctgcagttag  <  1:11090239‑M1/35‑35 (MQ=255)
                                  |                                  
TGGCGCAACCGCAGAAAACGCCCCCACCACCACCCCGATAGAACCAAAGTTAGCGAAACCGCACAACGC  >  REL606/2204190‑2204258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.