Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,462,320 | IS150 (–) +3 bp | 90.4% | intergenic (‑82/‑257) | mokB ← / → trg | regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 664688 = | NA (NA) | 66 (0.700) | 36/44 | NT | 89.1% | noncoding (1/1443 nt) | IS150 | repeat region |
? | REL606 | 1462320 = | 7 (0.090) | intergenic (‑82/‑259) | mokB/trg | regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor | |||||
* | ? | REL606 | = 666130 | NA (NA) | 66 (0.640) | 36/48 | NT | 89.2% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | = 1462322 | 7 (0.080) | intergenic (‑84/‑257) | mokB/trg | regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
TTAACTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCG > REL606/666101‑666164 | ttAACTGTCCAACTTTTTGGTGTCAGTAC‑ATTTCa > 1:2745646/1‑35 (MQ=255) ttAACTGTCCAACTTTTTGGGGTCAGTAC‑ATTTcg > 1:17977660/1‑34 (MQ=255) ttAACTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCa > 1:6292258/1‑35 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAg < 1:6953889/35‑1 (MQ=255) tAACTGTACAACTTTTTGGGGTCAGTAC‑ATTTCAg < 1:7191247/35‑1 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAgg > 1:10974702/1‑35 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAgg < 1:18658842/35‑1 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAggg < 1:14159931/35‑1 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAggg > 1:2794403/1‑35 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAggg < 1:2304427/35‑1 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTAC‑AATCCAggg < 1:2435937/35‑1 (MQ=11) cTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGc > 1:13239558/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGc > 1:2896254/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTAC‑AATCCAGGGc > 1:12173974/1‑35 (MQ=11) tGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCt > 1:19145898/1‑35 (MQ=255) tGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCt > 1:18819481/1‑35 (MQ=255) tGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCt > 1:3487247/1‑35 (MQ=255) tGTCCAACTTTTTGGGGTCAGTAC‑AATCCAGGGCt > 1:16227253/1‑35 (MQ=14) gTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCtt < 1:12367228/35‑1 (MQ=255) gTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCtt > 1:20274748/1‑35 (MQ=255) tCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCttt > 1:12797761/1‑35 (MQ=255) tCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCttt < 1:10500762/35‑1 (MQ=255) ccAACTTTTTGGGGTCAGTAC‑ATTTCAGGGTtttt < 1:17975374/35‑1 (MQ=255) ccAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCtttt > 1:15357225/1‑35 (MQ=255) cAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCttttt < 1:7000530/35‑1 (MQ=255) aaCTTTTTGGGGTCAGTACAACTTCGGGGCttttc > 1:18506961/1‑34 (MQ=0) aaCTTTTTGGGGTCAGTAC‑ATTTCAGGGCTTTTTc < 1:6421696/35‑1 (MQ=255) aaCTTTTTGGGGTCAGTAC‑ATTTCAGGGCTTTTTc > 1:16609813/1‑35 (MQ=255) aaCTTTTTGGGGTCAGTAC‑ATTTCAGGGCTTTTTc < 1:12886781/35‑1 (MQ=255) cTTTTTGGGGTCAGTAC‑ATTTCAGGGCtttttaga > 1:8615229/1‑32 (MQ=255) tttttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACg < 1:1032592/35‑1 (MQ=255) tttttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACg < 1:8881663/35‑1 (MQ=255) tttttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACg > 1:14646941/1‑35 (MQ=255) tcttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGa < 1:59424/33‑1 (MQ=255) tttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAg > 1:6581808/1‑35 (MQ=255) tttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAg < 1:5393534/35‑1 (MQ=255) tttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAg > 1:2310492/1‑35 (MQ=255) tttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAg < 1:17692511/35‑1 (MQ=255) ttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAGc > 1:5323053/1‑35 (MQ=255) ttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAGc < 1:13494482/35‑1 (MQ=255) ttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAGc > 1:1959364/1‑35 (MQ=255) tGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAGcc < 1:11717832/35‑1 (MQ=255) tGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAGcc > 1:8607355/1‑35 (MQ=255) gggTCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCgg < 1:6969402/35‑1 (MQ=255) gggTCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCgg < 1:19255583/35‑1 (MQ=255) gggTCAGTAC‑ATTTAAGGGCTTTTTCACGAGCCgg < 1:11595856/35‑1 (MQ=255) ggTCAGTAC‑ATTTCAGTGCTTTTTCACGAGCCGgc > 1:279280/1‑35 (MQ=255) ggTCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGgc > 1:11910738/1‑35 (MQ=255) gTCAGTAC‑ATTTCAGGGTTTTTTCACGAGCCGgcg < 1:13384539/35‑1 (MQ=255) gTCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGgcg > 1:4135610/1‑35 (MQ=255) tCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGgcgc > 1:882691/1‑35 (MQ=255) tCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGgcgc > 1:6462808/1‑35 (MQ=255) tCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGgcgc > 1:19570185/1‑35 (MQ=255) tCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGgcgc < 1:12229038/35‑1 (MQ=255) tCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGgcgc > 1:10697752/1‑35 (MQ=255) cAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGGCGCt > 1:17727729/1‑35 (MQ=255) aGTAC‑ATTTCAGGGCTTTTTCACGAGCCGGCGCtt > 1:20283801/1‑35 (MQ=255) gTAC‑ATTTCAGGGCTTTTTCACGAGCCGGCGCttt > 1:5555404/1‑35 (MQ=255) gTAC‑ATTTCAGGGCTTTTTCACGAGCCGGCGCttt > 1:9626258/1‑35 (MQ=255) aTTTCAGGGTTTTTTCGCGAGCCGGCGCTTTATcg < 1:15646362/35‑1 (MQ=38) aTTTCAGGGCTTTTTCACGAGCCGGCGCTTTATcg < 1:4457560/35‑1 (MQ=255) aTTTCAGGGCTTTTTCACGAGCCGGCGCTTTATcg < 1:8097324/35‑1 (MQ=255) aTTTCAGGGCTTTTTCACGAGCCGGCGCTTTATcg > 1:10494273/1‑35 (MQ=255) | TTAACTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCG > REL606/666101‑666164 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |