New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1075765 | 68 (0.660) | 14 (0.170) | 4/38 | NT | 15.8% | coding (220/2547 nt) | torA | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
? | REL606 | = 3523984 | 95 (1.170) | coding (128/714 nt) | livF | leucine/isoleucine/valine transporter subunit |
CTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1075727‑1075765 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGGAAAACCACCTTGCTTGGTACGTTATGCGGCGA < REL606/3523984‑3523951 CTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTG < 1:15441938/35‑1 CTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTG > 1:2019437/1‑35 CTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTG > 1:623399/1‑35 TATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGG < 1:7948259/35‑1 TATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGG < 1:18686009/35‑1 TATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGG < 1:5613567/35‑1 TATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGG > 1:1358609/1‑35 TATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGG < 1:8644725/35‑1 ATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGC < 1:13080452/35‑1 ATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGC < 1:6543588/35‑1 ATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGC < 1:19246269/35‑1 TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG > 1:13178300/1‑35 TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG < 1:11320296/35‑1 TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG < 1:17191885/35‑1 TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG < 1:10222209/35‑1 TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG < 1:14790196/35‑1 TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG < 1:20114255/35‑1 TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG > 1:8549419/1‑35 TCCGCGCGACGGGGAAGGATGGTCGCTTTGTGGCG < 1:12952226/35‑1 CCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGG < 1:18564113/35‑1 CCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGG < 1:8885754/35‑1 CCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGG < 1:10988856/35‑1 CGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGG > 1:800654/1‑35 GCGACGGTGAAGGATGGTCGCTTTGTGGCGGGcgg > 1:6846881/1‑32 GACGGTGAAGGATGGTCGCTTTGTGGCGGGGGAAc > 1:8728639/1‑34 GACGGTGAAGGATGGTCGCTTTGTGGCGGGGGAAc > 1:2237093/1‑34 GACGGTGAAGGATGGTCGCTTTGTGGCGGGGGAAA > 1:904461/1‑35 GACGGTGAAGGATGGTCGCTTTGTGGCGGGGAAAA > 1:11190354/1‑35 GACGGTGAAGGATGGTCGCTTTGTGGCGGGGAAAA > 1:5183576/1‑35 ACGGTGAAGGATGGTCGCTTTGTGGCGGGGGAAAa > 1:753460/1‑34 ACGGTGAAGGATGGTCGCTTTGTGGCGGGGGAAAC > 1:14619070/1‑35 ACGGTGAAGGATGGTCGCTTTGTGGCGGGGAAAcc > 1:13771578/1‑33 CGGTGAAGGATGGTCGCTTTGTGGCGGGGAAAcag > 1:7817771/1‑32 CGGTGAAGGATGGTCGCTTTGTGGCGGGGAAAACg > 1:8781299/1‑34 CGGTGAAGGATGGTCGCTTTGTGGCGGGGAAAACg > 1:15327233/1‑34 CGGTGAAGGATGGTCGCTTTGTGGCGGCGAAAACC > 1:14402930/1‑35 GGTGAAGGATGGTCGCTTTGTGGCGGGGAAAACgg > 1:5167232/1‑33 GGTGAAGGATGGTCGCTTTGTGGCGGGGAAAACCA > 1:4285141/1‑35 GGTGAAGGATGGTCGCTTTGTGGCGGGCAAAACCg > 1:5074228/1‑34 GTGAAGGATGGTCGCTTTGTGGCGGGGAAAACCgt > 1:5964022/1‑33 GTGAAGGATGGTCGCTTTGTGGCGGGGAAAACCgt > 1:15281814/1‑33 GTGAAGGATGGTCGCTTTGTGGCGGGGAAAACCct > 1:7988386/1‑33 GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG > 1:8801591/1‑35 GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG > 1:9651681/1‑35 GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG < 1:6543526/35‑1 GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG < 1:4974025/35‑1 GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG < 1:18294291/35‑1 GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG < 1:17739445/35‑1 GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG < 1:15388601/35‑1 GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG > 1:14384699/1‑35 GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG > 1:10161368/1‑35 CGGGGAAACCCACCTTGCTTGGTACGTTATGCGGC < 1:7495771/35‑1 CGGGGAAAACCACCTTGCTTGGTACGTTATGCGGC < 1:5825703/35‑1 CGGGGAAAACCACCTTGCTTGGTACGTTATGCGGC > 1:5220328/1‑35 CGGGGAAAACCACCTTGCTTGGTACGTTATGCGGC > 1:2718504/1‑35 GGGGAAAACCACCTTGCTTGGTACGTTATGCGGCG > 1:7996605/1‑35 GGGGAAAACCACCTTGCTTGGTACGTTATGCGGCG < 1:19298804/35‑1 GGGGAAAACCACCTTGCTTGGTACGTTATGCGGCG > 1:13992608/1‑35 GGGAAAACCACCTTGCTTGGTACGTTATGCGGCGA > 1:1079538/1‑35 CTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1075727‑1075765 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGGAAAACCACCTTGCTTGGTACGTTATGCGGCGA < REL606/3523984‑3523951 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |