Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,398,6931.→A100.0% 1.0 1coding (542/1185 nt)tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (0/1):  ref base (0/0):  total (0/1)

GGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTT  >  REL606/3398667‑3398706
                           |              
ggATTTTCGCTTCCCACTCTGCGTCGGTTCCCAgc       >  1:15002491/1‑35 (MQ=1)
       nncTTNNCACTCTGCGTCGCACGTTCCATCGCttt  <  1:13067686/33‑1 (MQ=9)
                           |              
GGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTT  >  REL606/3398667‑3398706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.