New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1112140 =NA (NA)14 (0.140) 5/48 NT 35.9% noncoding (81/88 nt) serX tRNA‑Ser
?REL606 = 3173882 25 (0.240)coding (905/1245 nt) ygjU sodium:serine/threonine symporter

TCTATTCCGCTGGGTGCCACCATCAATATGGCGGGCGCAGCAATCACCATTACCGTGTTGACGCTGGCT  >  REL606/3173848‑3173916
                                  |                                  
tCTATTCCGCTGGGTGCCACCATCAATATggcggg                                    <  1:19603867/35‑1 (MQ=255)
tCTATTCCGCTGGGTGCCACCATCAATATggcggg                                    <  1:15141527/35‑1 (MQ=255)
tCTATTCCGCTGGGTGCCACCATCAATATggcggg                                    >  1:5327103/1‑35 (MQ=255)
tCTATTCCGCTGGGTGCCACCATCAATATggcggg                                    <  1:16968758/35‑1 (MQ=255)
tCTATTCCGCTGGGTGCCACCATCAATATggcggg                                    >  1:1635427/1‑35 (MQ=255)
tCTATTCCGCTGGGTGCCACCATCAATATggcggg                                    >  1:15986254/1‑35 (MQ=255)
 cTATTCCGCTGGGTGCCACCATCAATATGGCGGGg                                   <  1:12603607‑M2/35‑2 (MQ=255)
  tATTCCGCTGGGTGCCACCATCAATATGGCGGGgg                                  <  1:17095838‑M2/35‑3 (MQ=255)
   aTTCCGCTGGGTGCCACCATCAATATGGCGGgcgc                                 <  1:4969989/35‑1 (MQ=255)
   aTTCCGCTGGGTGCCACCATCAATATGGCGGgcgc                                 <  1:6942514/35‑1 (MQ=255)
   aTTCCGCTGGGTGCCACCATCAATATGGCGGGggg                                 <  1:19072227‑M2/35‑4 (MQ=255)
   aTTCCGCTGGGTGCCACCATCAATATGGCGGGggg                                 <  1:17714398‑M2/35‑4 (MQ=255)
   aTTCCGCTGGGTGCCACCATCAATATGGCGGGggg                                 <  1:16014695‑M2/35‑4 (MQ=255)
    ttCCGCTGGGTGCCACCATCAATATGGCGGGgggg                                <  1:16021206‑M2/35‑5 (MQ=255)
    ttCCGCTGGGTGCCACCATCAATATGGCGGGCgca                                <  1:2424951/35‑1 (MQ=255)
     tCCGCTGGGTGCCACCATCAATATGGCGGGggggg                               <  1:7592129‑M2/35‑6 (MQ=255)
     tCCGCTGGGTGCCACCATCAATATGGCGGGggggg                               <  1:19472337‑M2/35‑6 (MQ=255)
     tCCGCTGGGTGCCACCATCAATATGGCGGGCgcag                               <  1:369814/35‑1 (MQ=255)
      ccGCTGGGTGCCACCATCAATATGGCGGGgggggg                              <  1:17920451‑M2/35‑7 (MQ=255)
      ccGCTGGGTGCCACCATCAATATGGCGGGgggggg                              <  1:16569456‑M2/35‑7 (MQ=255)
      ccGCTGGGTGCCACCATCAATATGGCGGGgggggg                              <  1:14454741‑M2/35‑7 (MQ=255)
      ccGCTGGGTGCCACCATCAATATGGCGGGgggggg                              <  1:8015691‑M2/35‑7 (MQ=255)
      ccGCTGGGTGCCACCATCAATATGGCGGGgggggg                              <  1:13513223‑M2/35‑7 (MQ=255)
      ccGCTGGGTGCCACCATCAATATGGCGGGCgcagc                              <  1:8893370/35‑1 (MQ=255)
       cGCTGGGTGCCACCATCAATATGGCGGGggggggg                             <  1:666461‑M2/35‑8 (MQ=255)
       cGCTGGGTGCCACCATCAATATGGCGGGCgcagca                             <  1:12116/35‑1 (MQ=255)
        gCTGGGTGCCCCCATCAATATGGCGGGCGCAGCaa                            <  1:10082644/35‑1 (MQ=255)
        gCTGGGTGCCACCATCAATATGGCGGGgggggggg                            <  1:8732747‑M2/35‑9 (MQ=255)
         cggggTGCCACCATCAATATGGCGGGCGCAGCAAt                           <  1:6605878/33‑1 (MQ=255)
         cTGGGTGCCCCCATCAATATGGCGGGCGCAGCAAt                           <  1:5372281/35‑1 (MQ=255)
         cTGGGTGCCACCATCAATATGGCGGGggggggggg                           <  1:15797588‑M2/35‑10 (MQ=255)
         cTGGGTGCCACCATCAATATGGCGGGggggggggg                           <  1:3214526‑M2/35‑10 (MQ=255)
         cTGGGTGCCACCATCAATATGGCGGGggggggggg                           <  1:14161945‑M2/35‑10 (MQ=255)
         cTGGGTGCCACCATCAATATGGCGGGCGCAGCAAt                           <  1:1071302/35‑1 (MQ=255)
         cTGGGTGCCACCATCAATATGGCGGGCGCAGCAAt                           <  1:9279070/35‑1 (MQ=255)
          tGGGTGCCACCATCAATATGGCGGGgggggggggg                          <  1:19401678‑M2/35‑11 (MQ=255)
          tGGGTGCCACCATCAATATGGCGGGgggggggggg                          <  1:7594178‑M2/35‑11 (MQ=255)
          tGGGTGCCACCATCAATATGGCGGGgggggggggc                          <  1:14642204‑M2/35‑11 (MQ=255)
          tGGGTGCCACCATCAATATGGCGGGggggggggga                          <  1:9070020‑M2/35‑11 (MQ=255)
          tGGGTGCCACCATCAATATGGCGGGCGCAGCAATc                          <  1:366443/35‑1 (MQ=255)
          tGGGTGCCACCATCAATATGGCGGGCGCAGCAATc                          <  1:10479661/35‑1 (MQ=255)
           gggTGCCACCATCAATATGGCGGGCGCAGCAATCa                         <  1:11212754/35‑1 (MQ=255)
           gggTGCCACCATCAATATGGCGGGCGCAGCAATCa                         <  1:2147773/35‑1 (MQ=255)
           gggTGCCACCATCAATATGGCGGGCGCAGCAATCa                         <  1:1294170/35‑1 (MQ=255)
            ggTGCCACCATCAATATGGCGGGCGCAGCAATCAc                        <  1:12790229/35‑1 (MQ=255)
             gTGCCACCATCAATATGGCGGGCGCAGCAATCAcc                       <  1:16576959/35‑1 (MQ=255)
               gacaccaTCAATATGGCGGGCGCAGCAATCACAAt                     <  1:740320/33‑1 (MQ=38)
                cccccaTCAATATGGCGGGCGCAGCAATCAACAtt                    <  1:6533512/32‑1 (MQ=37)
                cccccaTCAATATGGAGGGCGCAGCATTCACCAtt                    <  1:19042679/32‑1 (MQ=25)
                     aTCAATATGGCGGGCGCAGCAATCACCATTACCgt               <  1:10717854/35‑1 (MQ=255)
                       cAATATGGGGGGCGCAGCAATCACCATTACCgtgt             <  1:1410819/35‑1 (MQ=255)
                        aaTATGGCGGGCGCAGCAATCACCATTACCGTGtt            <  1:3177831/35‑1 (MQ=255)
                        aaTAGGGCGGGCGCAGCAATCACCATTACCGTGtt            <  1:9268832/35‑1 (MQ=255)
                         atatGGCGGGCGCAGCAATCACCATTACCGTGTTg           <  1:4655919/35‑1 (MQ=255)
                          tatGGCGGGCGCAGAAATCACCATTACCGTGTTGa          <  1:14196561/35‑1 (MQ=255)
                            tGGCGGGCGCAGCAATCACAATTACCGTGTTGACg        <  1:9748194/35‑1 (MQ=255)
                             ggggggcgCAGCATTCACCATTACCGTGTTGACgc       <  1:12336591/32‑1 (MQ=37)
                             ggcgggcgCAGCAATCACCATTACCGTGTTGACgc       <  1:3178062/35‑1 (MQ=255)
                              gcgggcgCAGCAATCACCATTACCGTGTTGACgct      <  1:4928236/35‑1 (MQ=255)
                              gcgggcgCAGCAATCACCATTACCGTGTTGACgct      >  1:13810310/1‑35 (MQ=255)
                               ggggcgCAGCAATCACCATTACAGTGTTGACgctg     <  1:16387170/34‑1 (MQ=255)
                               cgggcgCAGCATTCACCATTACCGTGTTGACgctg     <  1:10295758/35‑1 (MQ=255)
                               cgggcgCAGCATTCACCATTACCGTGTTGACgctg     <  1:7401808/35‑1 (MQ=255)
                               cgggcgCAGCAATCACCATTACCGTGTTGACgctg     <  1:12867632/35‑1 (MQ=255)
                               cgggcgCAGCAATCACCATTACCGTGTTGACgctg     >  1:1421594/1‑35 (MQ=255)
                               cgggcgCAGCAATCACCATTACCGTGTTGACgctg     >  1:15731626/1‑35 (MQ=255)
                               cgggcgCAGCAATCACCATTACCGTGTTGACgctg     <  1:18377201/35‑1 (MQ=255)
                               cgggcgCAGCAATCACCATTACCGTGTTGACgctg     >  1:16822957/1‑35 (MQ=255)
                               cgggcgCAGCAATCACCATTACCGTGTTGACgctg     >  1:5737964/1‑35 (MQ=255)
                               cgggcgCAACATTCACCATTACCGTGTTGACgctg     <  1:6163754/35‑1 (MQ=37)
                                gggcgCAGCATTCACCATTACCGTGTTGACgctgg    <  1:4940574/35‑1 (MQ=255)
                                gggcgCAGCAATCACCATTACCGTGTTGACgctgg    <  1:1641404/35‑1 (MQ=255)
                                gggcgCAGCAATCACCATTACCGTGTTGACgctgg    >  1:19426266/1‑35 (MQ=255)
                                gggcgCAGCAATCACCATTACCGTGTTGACgctgg    <  1:8506461/35‑1 (MQ=255)
                                gggcgCAGCAATCACCATTACCGTGTTGACgctgg    >  1:2897532/1‑35 (MQ=255)
                                gggcgCAGCAATCACCATTACCGTGTTGACgctgg    <  1:10915228/35‑1 (MQ=255)
                                gggcgCAGCAATCACCATCACCGTGTTGACgctgg    >  1:6075211/1‑35 (MQ=255)
                                gggagCAGCAATCACCATTACCGTGTTGACgctgg    <  1:13845099/35‑1 (MQ=255)
                                 ggcgCAGCAATCACCATTACCGTGTTGACgctggc   >  1:1237004/1‑35 (MQ=255)
                                 ggcgCAGCAATCACCATTACCGTGTTGACgctggc   >  1:10809097/1‑35 (MQ=255)
                                  gcgcAGCATTCACCATTACCGTGTTGACgctggct  <  1:16369957/35‑1 (MQ=255)
                                  gcgcAGCAATCACCATTACCGTGTTGACgctggct  <  1:5571509/35‑1 (MQ=255)
                                  gcgcAGCAATCACCATTACCGTGTTGACgctggct  >  1:7265636/1‑35 (MQ=255)
                                  |                                  
TCTATTCCGCTGGGTGCCACCATCAATATGGCGGGCGCAGCAATCACCATTACCGTGTTGACGCTGGCT  >  REL606/3173848‑3173916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.