Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 2,448,493 IS186 (+) +6 bp 66.5% intergenic (+24/+21) nupC → / ← yfeA nucleoside (except guanosine) transporter/predicted diguanylate cyclase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2448493 =30 (0.470)59 (0.660) 32/42 NT 58.4% intergenic (+24/+26) nupC/yfeA nucleoside (except guanosine) transporter/predicted diguanylate cyclase
?REL606 = 2774196 NA (NA)noncoding (1343/1343 nt) IS186 repeat region
* ? REL606 = 244849832 (0.500)64 (0.710) 34/42 NT 58.8% intergenic (+29/+21) nupC/yfeA nucleoside (except guanosine) transporter/predicted diguanylate cyclase
?REL606 2772854 = NA (NA)noncoding (1/1343 nt) IS186 repeat region

CTGATTAACAGGCGTAAAAAAACCGGGGAATTATccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2448526‑2448493
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGAACC  <  REL606/2774196‑2774168
                                                               
CTGATTAACAGGCGTAAAAAAACCGGGGAATTATC                              <  1:10145800/35‑1
CTGATTAACAGGCGTAAAAAAACCGGGGAATTATC                              <  1:15732189/35‑1
CTGATTAACAGGCGTAAAAAAACCGGGGAATTATC                              <  1:8166078/35‑1
CTGATTAACAGGCGTAAAAAAACCGGGGAATTATC                              >  1:17938064/1‑35
CTGATTAACAGGCGTAAAAAAACCGGGGAATTATC                              >  1:5520301/1‑35
CTGATTAACAGGCGTAAAAAAACCGGGGAATTATC                              <  1:4283991/35‑1
CTGATTAACAGGCGTAAAAAAACCGGGGAATTATC                              <  1:19512042/35‑1
 TGATTAACAGGCGTAAAAAAACCGGGGAATTATCC                             <  1:15685924/35‑1
 TGATTAACAGGCGTAAAAAAACCGGGGAATTATCC                             >  1:1793653/1‑35
 TGATTAACAGGCGTAAAAAAACCGGGGAATTATCC                             <  1:18973916/35‑1
 TGATTAACAGGCGTAAAAAAACCGGGGAATTATCC                             >  1:2869436/1‑35
 TGATTAACAGGCGTAAAAAAACCGGGGAATTATCC                             <  1:4144605/35‑1
 TGATTAACAGGCGTAAAAAAACCGGGGAATTATCC                             <  1:8438107/35‑1
 TGATTAACAGGCGTAAAAAAACCGGGGAATTATCC                             >  1:9170554/1‑35
  GATTAACAGGCGTAAAAAAACCGGGGAATTATCCC                            <  1:4972671/35‑1
  GATTAACAGGCGTAAAAAAACCGGGGAATTATCCC                            <  1:6314661/35‑1
   ATTAACAGGCGTAAAAAAACCGGGGAATTATCCCA                           >  1:19316554/1‑35
   ATTAACAGGCGTAAAAAAACCGGGGAATTATCCCA                           <  1:19267890/35‑1
   ATTAACAGGCGTAAAAAAACCGGGGAATTATCCCA                           <  1:18444975/35‑1
   ATTAACAGGCGTAAAAAAACCGGGGAATTATCCCA                           <  1:18303174/35‑1
   ATTAACAGGCGTAAAAAAACCGGGGAATTATCCCA                           >  1:6573409/1‑35
   ATTAACAGGCGTAAAAAAACCGGGGAATTATCCCA                           <  1:14295695/35‑1
   ATTAACAGGCGTAAAAAAACCGGGGAATTATCCCA                           >  1:13148358/1‑35
    TTAACAGGCGTAAAAAAACCGGGGAATTATCCCAT                          >  1:14985376/1‑35
    TTAACAGGCGTAAAAAAACCGGGGAATTATCCCAT                          >  1:640511/1‑35
    TTAACAGGCGTAAAAAAACCGGGGAATTATCCCAT                          <  1:8641719/35‑1
    TTAACAGGCGTAAAAAAACAGGGGAATTATCCCAT                          >  1:6222865/1‑35
     TAACAGGCGTAAAAAAACCGGGGAATTATCCCATA                         <  1:1101830/35‑1
      AACAGGCGTAAAAAAACCGGGGAATTATCCCATAA                        <  1:8775529/35‑1
      AACAGGCGTAAAAAAACCGGGGAATTATCCCATAA                        <  1:13571975/35‑1
      AACAGGCGTAAAAAAACCGGGGAATTATCCCATAA                        <  1:9587619/35‑1
       ACAGGCGTAAAAAAACCGGGGAATTATCCCATAAG                       >  1:7351671/1‑35
       ACAGGCGTAAAAAAACCGGGGAATTATCCCATAAG                       >  1:11597622/1‑35
       ACAGGCGTAAAAAAACCGGGGAATTATCCCATAAG                       >  1:9395986/1‑35
       ACAGGCGTAAAAAAACCGGGGAATTATCCCATAAG                       >  1:17902106/1‑35
       ACAGGCGTAAAAAAACCGGGGAATTATCCCATAAG                       >  1:6459669/1‑35
        CAGGCGTAAAAAAACCGGGGAATTATCCCATAAGC                      >  1:3428254/1‑35
        CAGGCGTAAAAAAACCGGGGAATTATCCCATAAGC                      >  1:7776935/1‑35
         AGGCGTAAAAAAACCGGGGAATTATCCCATAAGCG                     <  1:14618220/35‑1
         AGGCGTAAAAAAACCGGGGAATTATCCCATAAGCG                     >  1:14200326/1‑35
         AGGCGTAAAAAAACCGGGGAATTATCCCATAAGCG                     <  1:2510540/35‑1
          GGCGTAAAAAAACCGGGGAATTATCCCATAAGCGC                    >  1:18932778/1‑35
          GGCGTAAAAAAACCGGGGAATTATCCCATAAGCGC                    >  1:16361401/1‑35
           GCGTAAAAAAACCGGGGAATTATCCCATAAGCGCT                   >  1:11810127/1‑35
           GCGTAAAAAAACCGGGGAATTATCCCATAAGCGCT                   <  1:15743302/35‑1
           GCGTAAAAAAACCGGGGAATTATCCCATAAGCGCT                   >  1:13550861/1‑35
            CGTAAAAAAACCGGGGAATTATCCCATAAGCGCTA                  >  1:17660642/1‑35
            CGTAAAAAAACCGGGGAATTATCCCATAAGCGCTA                  <  1:3648455/35‑1
            CGTAAAAAAACCGGGGAATTATCCCATAAGCGCTA                  >  1:1325689/1‑35
             GTAAAAAAACCGGGGAATTATCCCATAAGCGCTAA                 >  1:6366113/1‑35
             GTAAAAAAACCGGGGAATTATCCCATAAGCGCTAA                 <  1:7116173/35‑1
             GTAAAAAAACCGGGGAATTATCCCATAAGCGCTAA                 <  1:3772738/35‑1
             GTAAAAAAACCGGGGAATTATCCCATAAGCGCTAA                 >  1:2867691/1‑35
             GTAAAAAAACCGGGGAATTATCCCATAAGCGCTAA                 <  1:2587811/35‑1
             GTAAAAAAACCGGGGAATTATCCCATAAGCGCTAA                 <  1:7855353/35‑1
             GTAAAAAAACCGGGGAATTATCCCATAAGCGCTAA                 <  1:17432747/35‑1
              TAAAAAAACCGGGGAATTATCCCATAAGCGCTAAC                <  1:1399732/35‑1
              TAAAAAAACCGGGGAATTATCCCATAAGCGCTAAC                >  1:3258004/1‑35
              TAAAAAAACCGGGGAATTATCCCATAAGCGCTAAC                <  1:8657160/35‑1
              TAAAAAAACCGGGGAATTATCCCATAAGCGCTAAC                <  1:17790497/35‑1
               AAAAAAACCGGGGAATTATCCCATAAGCGCTAACT               <  1:234345/35‑1
               AAAAAAACCGGGGAATTATCCCATAAGCGCTAACT               <  1:204309/35‑1
               AAAAAAACCGGGGAATTATCCCATAAGCGCTAACT               >  1:7578461/1‑35
                AAAAAACCGGGGAATTATCCCATAAGCGCTAACTT              >  1:20345336/1‑35
                 AAAAACCGGGGAATTATCCCATAAGCGCTAACTTA             <  1:2847601/35‑1
                 AAAAACCGGGGAATTATCCCATAAGCGCTAACTTA             >  1:17223589/1‑35
                 AAAAACCGGGGAATTATCCCATAAGCGCTAACTTA             <  1:15814655/35‑1
                  AAAACCGGGGAATTATCCCATAAGCGCTAACTTAA            >  1:9217002/1‑35
                   AAACCGGGGAATTATCCCATAAGCGCTAACTTAAG           <  1:13838483/35‑1
                   AAACCGGGGAATTATCCCATAAGCGCTAACTTAAG           >  1:12149629/1‑35
                   AAACCGGGGAATTATCCCATAAGCGCTAACTTAAG           >  1:1623639/1‑35
                   AAACCGGGGAATTATCCCATAAGCGCTAACTTAAG           <  1:2267930/35‑1
                    AACCGGGGAATTATCCCATAAGCGCTAACTTAAGG          <  1:12909675/35‑1
                    AACCGGGGAATTATCCCATAAGCGCTAACTTAAGG          >  1:20152343/1‑35
                     ACCGGGGAATTATCCCATAAGCGCTAACTTAAGGG         >  1:12773698/1‑35
                     ACCGGGGAATTATCCCATAAGCGCTAACTTAAGGG         <  1:11425113/35‑1
                     ACCGGGGAATTATCCCATAAGCGCTAACTTAAGGG         >  1:13782346/1‑35
                      CCGGGGAATTATCCCATAAGCGCTAACTTAGGGGg        >  1:27791/1‑34
                      CCGGGGAATTATCCCATAAGCGCTAACTTAAGGGT        >  1:18139901/1‑35
                       CGGGGAATTATCCCATAAGCGCTAACTTAAGGGTT       <  1:7832349/35‑1
                       CGGGGAATTATCCCATAAGCGCTAACTTAAGGGTT       >  1:18362053/1‑35
                       CGGGGAATTATCCCATAAGCGCTAACTTAAGGGTT       >  1:17130580/1‑35
                       CGGGGAATTATCCCATAAGCGCTAACTTAAGGGTT       >  1:9383701/1‑35
                        GGGGAATTATCCCATAAGCGCTAACTTAAGGGTTG      >  1:19825005/1‑35
                        GGGGAATTATCCCATAAGCGCTAACTTAAGGGTTG      >  1:19422040/1‑35
                        GGGGAATTATCCCATAAGCGCTAACTTAAGGGTTG      >  1:13480423/1‑35
                         GGGAATTATCCCATAAGCGCTAACTTAAGGGTTGA     <  1:541668/35‑1
                         GGGAATTATCCCATAAGCGCTAACTTAAGGGTTGA     <  1:5329477/35‑1
                         GGGAATTATCCCATAAGCGCTAACTTAAGGGTTGA     >  1:10711036/1‑35
                          GGAATTATCCCATAAGCGCTAACTTAAGGGTTGAA    >  1:15301037/1‑35
                          GGAATTATCCCATAAGCGCTAACTTAAGGGTTGAA    >  1:1579876/1‑35
                          GGAATGATCCCATAAGCGCTAACTTAAGGGTTGAA    <  1:9789853/35‑1
                           GAATTATCCCATAAGCGCTAACTTAAGGGTTGtgg   <  1:18505851/35‑4
                            AATTATCCCATAAGCGCTAACTTAAGGGTTGAACC  <  1:1350345/35‑1
                            AATTATCCCATAAGAGCTAACTTAAGGGTTGAACC  <  1:1328599/35‑1
                                                               
CTGATTAACAGGCGTAAAAAAACCGGGGAATTATccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2448526‑2448493
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGAACC  <  REL606/2774196‑2774168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.