New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1249678 =70 (0.680)6 (0.090) 4/30 NT 11.3% coding (230/633 nt) dhaL dihydroxyacetone kinase, C‑terminal domain
?REL606 1306336 = 50 (0.780)intergenic (‑97/+274) cls/kch cardiolipin synthetase/voltage‑gated potassium channel

TCATTCTCAAGAATACCGGTATGACGCTGCTTTCCAGCGTCGG‑‑‑‑‑‑‑‑‑  <  REL606/1249720‑1249678
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgtcggGGGCGGGGG  >  REL606/1306336‑1306344
                                                    
tgATTCTCAAGAATACCGGTATGACGCTGCTTTCC                   <  1:5694811/33‑1
TCATTCTCAAGAATACCTGTATGACGCTGCTTTCC                   >  1:14795953/1‑35
TCATTCTCAAGAATACCGGTATGACGCTGCTTTCC                   >  1:8546495/1‑35
TCATTCTCAAGAATACCGGTATGACGCTGCTTTCC                   <  1:18806597/35‑1
TCATTCTCAAGAATACCGGTATGACGCTGCTTTCC                   <  1:10845086/35‑1
TCATTCTCAAGAATACCGGTATGACGCTGCTTTCC                   <  1:4225603/35‑1
TCATTCTCAAGAATACCGGTATGACGCTGCTTTCC                   <  1:16659765/35‑1
TCATTCTCAAGAATACCGGTATGACGCTGCTTTCC                   >  1:12217323/1‑35
 CATTCTCAAGAATACCGGTATGACGCTGCTTTCCA                  <  1:10613527/35‑1
 CATTCTCAAGAATACCGGTATGACGCTGCTTTCCA                  <  1:9552949/35‑1
 CATTCTCAAGAATACCGGTATGACGCTGCTTTCCA                  <  1:9273390/35‑1
 CATTCTCAAGAATACAGGTATGACGCTGCTTTCCA                  <  1:10703207/35‑1
  ATTCTCAAGAATACCGGTATGACGCTGCTTTCCAG                 >  1:5432229/1‑35
  ATTCTCAAGAATACCGGTATGACGCTGCTTTCCAG                 <  1:14713442/35‑1
  ATTCTCAAGAATACCGGTATGACGCTGCTTTCCAG                 <  1:993136/35‑1
  ATTCTCAAGAATACCGGTATGACGCTGCTTTCCAG                 <  1:11237113/35‑1
   TTCTCAAGAATACCGGTATGACGCTGCTTTCCAGC                >  1:2539533/1‑35
   TTCTCAAGAATACCGGTATGACGCTGCTTTCCAGC                >  1:10829330/1‑35
   TTCTCAAGAATACCGGTATGACGCTGCTTTCCAGC                >  1:16248802/1‑35
   TTCTCAAGAATACCGGTATGACGCTGCTTTCCAGC                <  1:2949627/35‑1
   TTCTCAAGAATACCGGTATGACGCTGCTTTCCAGC                <  1:2940822/35‑1
   TTCTCAAGAATACCGGTATGACGCTGCTTTCCAGC                <  1:5119045/35‑1
   TTCTCAAGAATACCGGTATGACGCTGCTTTCAAGC                <  1:3031244/35‑1
    TCTCAAGAATACCGGTATGACGCTGCTTTCCAGCG               >  1:9119374/1‑35
    TCTCAAGAATACCGGTATGACGCTGCTTTCCAGCG               <  1:11498349/35‑1
    TCTCAAGAATACCGGTATGACGCTGCTTTCCAGCG               <  1:13369342/35‑1
    TCTCAAGAATACCGGTATGACGCTGCTTTCCAGCG               >  1:8716797/1‑35
     CTCAAGAATACCGGTATGACGCTGCTTTCCAGCGT              <  1:5353179/35‑1
     CTCAAGAATACCGGTATGACGCTGCTTTCCAGCGT              >  1:17006160/1‑35
     CTCAAGAATACCGGTATGACGCTGCTTTCCAGCGT              <  1:557951/35‑1
     CTCAAGAATACCGGTATGACGCTGCTTTCCAGCGT              <  1:12649994/35‑1
      TCAAGAATACCGGTATGACGCTGGTTTCCAGCGTC             >  1:8104574/1‑35
      TCAAGAATACCGGTATGACGCTGCTTTCCAGCGTC             >  1:19649350/1‑35
      TCAAGAATACCGGTATGACGCTGCTTTCCAGCGTC             >  1:19247541/1‑35
      TCAAGAATACCGGTATGACGCTGCTTTCCAGCGTC             >  1:16911406/1‑35
      TCAAGAATACCGGTATGACGCTGCTTTCCAGCGTC             >  1:3186563/1‑35
       CAAGAATACCGGTATGACGCTGCTTTCCAGCGTCG            >  1:8559480/1‑35
       CAAGAATACCGGTATGACGCTGCTTTCCAGCGTCG            <  1:8481619/35‑1
       CAAGAATACCGGTATGACGCTGCTTTCCAGCGTCG            <  1:6458736/35‑1
       CAAGAATACCGGTATGACGCTGCTTTCCAGCGTCG            >  1:14068199/1‑35
        tctAATACCGGTATGACGCTGCTTTCCAGCGTCGG           <  1:11926943/32‑1
        AAGAATACCGGTATTACGCTGCTTTCCAGCGTCGG           >  1:3743742/1‑35
        AAGAATACCGGTATGACGCTGCTTTCCAGCGTCGG           <  1:180446/35‑1
        AAGAATACCGGTATGACGCTGCTTTCCAGCGTCGG           >  1:17930958/1‑35
        AAGAATACCGGTATGACGCTGCTTTCCAGCGTCGG           >  1:16642122/1‑35
        AAGAATACCGGTATGACGCTGCTTTCCAGCGTCGG           <  1:16279669/35‑1
         AGAATACCGGTATGACGCTGCTTTCCAGCGTCGGG          >  1:2335478/1‑35
         AGAATACCGGTATGACGCTGCTTTCCAGCGTCGGG          >  1:8835007/1‑35
          GAATACCGGTATGACGCTGCTTTCCAGCGTCGGGG         >  1:18663670/1‑35
          GAATACCGGTATGACGCTGCTTTCCAGCGTCGGGG         >  1:18318876/1‑35
          GAATACCGGTATGACGCTGCTTTCCAGCGTCGGGG         >  1:14439876/1‑35
           AATACCGGTATGACGCTTCTTTCCAGCGTCGGGGG        >  1:19743269/1‑35
            ATACCGGTATGACGCTGCTTTCCAGCGTCGGGGGg       >  1:6975829/1‑34
            ATACCGGTATGACGCTGCTTTCCAGCGTCGGGGGg       >  1:3710887/1‑34
            ATACCGGTATGACGCTGCTTTCCAGCGTCGGGGGg       >  1:1856063/1‑34
             TACCGGTATGACGCTGCTTTCCAGCGTCGGGGGgg      >  1:3110524/1‑33
             TACCGGTATGACGCTGCTTTCCAGCGTCGGGGGgg      >  1:14609417/1‑33
              ACCGGTATGACGCTGCTTTCCAGCGTCGGGGGGGG     >  1:8850295/1‑35
               CCGGTATGACGCTGCTTTCCAGCGTCGGGGGGGGG    >  1:5593768/1‑35
                CGGTATGACGCTGCTTTCCAGCGTCGGGGGGGGGG   >  1:3996491/1‑35
                CGGTATGACGCTGCTTTCCAGCGTCGGGGGGGGGG   >  1:1024315/1‑35
                 GGTATGACGCTGCTTTCCAGCGTCGGGGGGGGGGG  >  1:4667686/1‑35
                 GGTATGACGCTGCTTTCCAGCGTCGGGGGGGGGGG  >  1:10827774/1‑35
                                                    
TCATTCTCAAGAATACCGGTATGACGCTGCTTTCCAGCGTCGG‑‑‑‑‑‑‑‑‑  <  REL606/1249720‑1249678
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgtcggGGGCGGGGG  >  REL606/1306336‑1306344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.