New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1430232 =98 (0.950)7 (0.100) 3/34 NT 10.1% coding (2159/3525 nt) ydbK fused predicted pyruvate‑flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein
?REL606 3284457 = 55 (0.760)coding (588/729 nt) mtgA monofunctional biosynthetic peptidoglycan transglycosylase

Only 100 of 146 total aligned reads displayed.

TGAAACGAAGTGGATTAGGTAATACAGCTGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGCGG  >  REL606/3284423‑3284491
                                  |                                  
tGAAACGAAGTGGATTAGGTAATACAGCTGCCAGt                                    >  1:7711503/1‑35 (MQ=255)
 gAAACGAAGTGGATTAGGTAATACAGCTGCCAGTa                                   >  1:5737979/1‑35 (MQ=255)
  aaaCGAAGTGGATTAGGTAATACAGCTGCCAGTaa                                  >  1:16987969/1‑35 (MQ=255)
  aaaCGAAGTGGATTAGGTAATACAGCTGCCAGTaa                                  >  1:6734890/1‑35 (MQ=255)
   aaCGAAGTGGATTAGGTAATACAGCTGCCAGTAAt                                 >  1:9182192/1‑35 (MQ=255)
   aaCGAAGTGGATTAGGTAATACAGCTGCCAGTAAt                                 >  1:2286701/1‑35 (MQ=255)
   aaCGAAGTGGATTAGGTAATACAGCTGCCAGTAAt                                 >  1:6261062/1‑35 (MQ=255)
      gAAGTGGATTAGGTAATACAGCTGCCAGTAATGCa                              >  1:6516153/1‑35 (MQ=255)
      gAAGTGGATTAGGTAATACAGCTGCCAGTAATGCa                              >  1:12565336/1‑35 (MQ=255)
      gAAGTGGATTAGGTAATACAGCTACCAGTAATGCa                              >  1:19501393/1‑35 (MQ=255)
       aaGTGGATTAGGTAATACAGCTGCCAGTAATGCAg                             >  1:16292180/1‑35 (MQ=255)
       aaGTGGATTAGGTAATACAGCTGCCAGTAATGCAg                             >  1:16465898/1‑35 (MQ=255)
       aaGTGGATTAGGTAATACAGCTGCCAGTAATGCAg                             >  1:11559229/1‑35 (MQ=255)
        aGTGGATTAGGTAATACAGCTGCCAGTAATGCAGc                            >  1:1061869/1‑35 (MQ=255)
         gTGGATTAGGTAATACAGCTGCCAGTAATGCAGCt                           >  1:79346/1‑35 (MQ=255)
         gTGGATTAGGTAATACAGCTGCCAGTAATGCAGCt                           >  1:17720944/1‑35 (MQ=255)
          tGGATTAGGTAATACAGCTGCCAGTAATGCAGCtt                          >  1:11964175/1‑35 (MQ=255)
          tGGATTAGGTAATACAGCTGCCAGTAATGCAGCtt                          >  1:591166/1‑35 (MQ=255)
           ggATTAGGTAATACAGCTGCCAGTAATGCAGCTTc                         >  1:8873771/1‑35 (MQ=255)
            gATTATGTAATACAGCTGCCAGTAATGCAGCTTcc                        >  1:782894/1‑35 (MQ=255)
            gATTAGGTAATACAGCTGCCAGTAATGCAGCTTcc                        >  1:17800638/1‑35 (MQ=255)
            gATTAGGTAATACAGCTGCCAGTAATGCAGCTTcc                        >  1:19674973/1‑35 (MQ=255)
            gATTAGGTAATACAGCTGCCAGTAATGCAGCTTcc                        >  1:10856700/1‑35 (MQ=255)
            gATTAGGTAATACAGCTGCCAGTAATGCAGCTTcc                        >  1:5977959/1‑35 (MQ=255)
            gATTAGGTAATACAGCTGCCAGTAATGCAGCTTcc                        >  1:8275457/1‑35 (MQ=255)
             aTTAGGTAATACAGCTGCCAGTAATGCAGCTTCCg                       >  1:8730159/1‑35 (MQ=255)
               tAGGTAATACAGCTGCCAGTAATGCAGCTTCCGAc                     >  1:17426988/1‑35 (MQ=255)
                aGGTAATACAGCTGCCAGTAATGCAGCTTCCGAcc                    >  1:14672314/1‑35 (MQ=255)
                aGGTAATACAGCTGCCAGTAATGCAGCTTCCGAcc                    >  1:12322867/1‑35 (MQ=255)
                 ggTAATACAGCTGCCAGTAATGCAGCTTCCGACCg                   >  1:18160098/1‑35 (MQ=255)
                 gaaaacccccctgccagTAATGCAGCTTCCGACCg                   <  1:8639598‑M2/18‑1 (MQ=255)
                 gaaaacacccctgccagTAATGCAGCTTCCGACCg                   <  1:9623199‑M2/18‑1 (MQ=255)
                  gcaaTACAGCTGCCAGTAATGCAGCTTCCGACCgg                  >  1:19235983/3‑35 (MQ=255)
                  gTAATACAGCTGCCAGTAATGCAGCTTCCGACCgg                  >  1:15877493/1‑35 (MQ=255)
                  gTAATACAGCTGCCAGTAATGCAGCTTCCGACCgg                  >  1:14278480/1‑35 (MQ=255)
                  gTAATACAGCTGCCAGTAATGCAGCTTCCGACCgg                  >  1:729002/1‑35 (MQ=255)
                   taacccccctgccagTAATGCAGCTTCCGACCggg                 <  1:1046908‑M2/20‑1 (MQ=255)
                   tAATACAGCTGCCAGTAATGCAGCTTCCGACCggg                 >  1:2378224/1‑35 (MQ=255)
                   tAATACAGCTGCCAGTAATGCAGCTTCCGACCggg                 >  1:3150089/1‑35 (MQ=255)
                   tAATACAGCTGCCAGTAATGCAGCTTCCGACCggg                 >  1:1059907/1‑35 (MQ=255)
                   tAATACAGCTGCCAGTAATGCAGCTTCCGACCggg                 >  1:18637420/1‑35 (MQ=255)
                   tAATACAGATGCCAGTAATGCAGCTTCCGACCggg                 <  1:10293702/35‑1 (MQ=255)
                    aacccccctgccagTAATGCAGCTTCCGACCGGGt                <  1:13946148‑M2/21‑1 (MQ=255)
                     ccccccctgccagTAATGCAGCTTCCGACCGGGTn               <  1:11205032‑M2/22‑1 (MQ=255)
                     ccccccctgccagTAATGCAGCTTCCGACCGGGTa               <  1:9616769‑M2/22‑1 (MQ=255)
                     aTACAGCTGCCAGTAATGCAGCTTCCGACCGGGTa               >  1:7976720/1‑35 (MQ=255)
                     aTACAGCTGCCAGTAATGCAGCTTCCGACCGGGTa               >  1:746222/1‑35 (MQ=255)
                      tACAGCTGCCAGTAATGCAGCTTCCGACCGGGTaa              >  1:19667249/1‑35 (MQ=255)
                      cccccctgccagTAATGCAGCTTCCGACCGGGTaa              <  1:460832‑M2/23‑1 (MQ=255)
                      cccccctgccagTAATGCAGCTTCCGACCGGGTaa              <  1:406484‑M2/23‑1 (MQ=255)
                       ccccctgccagTAATGCAGCTTCCGACCGGGTAAg             <  1:11747087‑M2/24‑1 (MQ=255)
                       ccccctgccagTAATGCAGCTTCCGACCGGGTAAg             <  1:18350050‑M2/24‑1 (MQ=255)
                       aCAGCTGCCAGTAATGCAGCTTCCGAGCGGGCAAg             >  1:326379/1‑35 (MQ=37)
                       aCAGCTGCCAGTAATGCAGCTTCCGACCGGGTacg             >  1:19978219/1‑33 (MQ=255)
                       aCAGCTGCCAGTAATGCAGCTTCCGACCGGGTAAg             >  1:11601775/1‑35 (MQ=255)
                       aCAGCTGCCAGTAATGCAGCTTCCGACCGGGTAAg             >  1:13291640/1‑35 (MQ=255)
                       aCAGCTGCCAGTAATGCAGCTTCCGACCGGGTAAg             >  1:20244866/1‑35 (MQ=255)
                        cccctgccagTAATGCAGCTTCCGACCGGGTAAGt            <  1:12565281‑M2/25‑1 (MQ=255)
                        cccctgccagTAATGCAGCTTCCGACCGGGTAAGt            <  1:6996888‑M2/25‑1 (MQ=255)
                        cAGCTGCCAGTAATGCAGCTTCCGACCGGGTAAGt            >  1:6899930/1‑35 (MQ=255)
                          gCTGCCAGTAATGCAGCTTCCGACCGGGTAAGttt          >  1:6496616/1‑35 (MQ=255)
                          gCTGCCAGTAATGCAGCTTCCGACCGGGTAAGttt          >  1:19798732/1‑35 (MQ=255)
                          gCTGCCAGTAATGCAGCTTCCGACCGGGTAAGttt          >  1:4565284/1‑35 (MQ=255)
                          gCTGCCAGTAATGCAGCTTCCGACCGGGTAAGttt          >  1:384713/1‑35 (MQ=255)
                          cctgccagTAATGCAGCTTCCGACCGGGTAAGttt          <  1:16878466‑M2/27‑1 (MQ=255)
                           ctgccagTAATGCAGCTTCCGACCGGGTAAGTTTg         <  1:4536649‑M2/28‑1 (MQ=255)
                           ctgccagTAATGCAGCTTCCGACCGGGTAAGTTTg         >  1:17430637‑M2/8‑35 (MQ=255)
                           ctgccagTAATGCAGCTTCCGACCGGGTAAGTTTg         >  1:459299‑M2/8‑35 (MQ=255)
                           ctgccagTAATGCAGCTTCCGACCGGGTAAGTTTg         >  1:13048670‑M2/8‑35 (MQ=255)
                           ctgccagTAATGCAGCTTCCGACCGGGTAAGTTTg         <  1:15209386‑M2/28‑1 (MQ=255)
                           ctgccagTAATGCAGCTTCCGACCGGGTAAGTTTg         <  1:5755216‑M2/28‑1 (MQ=255)
                           ctgccagTAATGCAGCTTCCGACCGGGTAAGTTTg         <  1:2684527‑M2/28‑1 (MQ=255)
                           ctgccagTAATGCAGCTTCCGACCGGGTAAGTTTg         <  1:6014257‑M2/28‑1 (MQ=255)
                            tgccagTAATGCAGCTTCCGACCGGGTAAGTTTGc        <  1:8360080‑M2/29‑1 (MQ=255)
                            tgccagTAATGCAGCTTCCGACCGGGTAAGTTTGc        >  1:5285808‑M2/7‑35 (MQ=255)
                            tgccagTAATGCAGCTTCCGACCGGGTAAGTTTGc        <  1:16337035‑M2/29‑1 (MQ=255)
                            tgccagTAATGCAGCTTCCGACCGGGTAAGTTTGc        >  1:16246211‑M2/7‑35 (MQ=255)
                            tgccagTAATGCAGCTTCCGACCGCGTAAGTTTGc        >  1:2861085‑M2/7‑35 (MQ=255)
                             gccagTAATGCAGCTTCCGACCGGGTAAGTTTGCt       >  1:19910512‑M2/6‑35 (MQ=255)
                             gccagTAATGCAGCTTCCGACCGGGTAAGTTTGCt       >  1:2958199‑M2/6‑35 (MQ=255)
                             ctcagTAATGCAGCTTCCGACCGGGTAAGTTTGCt       <  1:15035378‑M2/30‑1 (MQ=255)
                              ccagTAATGCAGCTTCCGACCGGGTAAGTTTGCTc      >  1:4037507‑M2/5‑35 (MQ=255)
                              ccagTAATGCAGCTTCCGACCGGGTAAGTTTGCTc      >  1:11168957‑M2/5‑35 (MQ=255)
                              ccagTAATGCAGCTTCCGACCGGGTAAGTTTGCTc      <  1:14126373‑M2/31‑1 (MQ=255)
                              ccagTAATGCAGCTTCCGACCGGGTAAGTTTGCTc      <  1:3111844‑M2/31‑1 (MQ=255)
                              ccagTAATGCAGCTTCCGACCGGGTAAGTTTGCTc      >  1:13663019‑M2/5‑35 (MQ=255)
                               cagTAATGCAGCTTCCGACCGGGTAAGTTTGCTcg     <  1:18826190‑M2/32‑1 (MQ=255)
                               cagTAATGCAGCTTCCGACCGGGTAAGTTTGCTcg     >  1:10911669‑M2/4‑35 (MQ=255)
                               cagTAATGCAGCTTCCGACCGGGTAAGTTTGCTcg     <  1:15239788‑M2/32‑1 (MQ=255)
                                agTAATGCAGCTTCCGACCGGGTAAGTTTGCTcgc    <  1:10306745‑M2/33‑1 (MQ=255)
                                agTAATGCAGCTTCCGACCGGGTAAGTTTGCTcgc    >  1:15842880‑M2/3‑35 (MQ=255)
                                agTAATGCAGCTTCCGACCGGGTAAGTTTGCTcgc    >  1:2096822‑M2/3‑35 (MQ=255)
                                agTAATGCAGCTTCCGACCGGGTAAGTTTGCTcgc    <  1:8096177‑M2/33‑1 (MQ=255)
                                agTAATGCAGCTTCCGACCGGGTAAGTTTGCTcgc    <  1:13552841‑M2/33‑1 (MQ=255)
                                agTAATGCAGCTTCCGACCGGGTAAGTTTGCTcgc    <  1:5717255‑M2/33‑1 (MQ=255)
                                agTAATGCAGCTTCCGACCGGGTAAGTTTGCTcgc    >  1:3049267‑M2/3‑35 (MQ=255)
                                 gTAATGCAGCTTCCGACCGGGTAAGTTTGCTcgcg   <  1:3356124‑M2/34‑1 (MQ=255)
                                  tAATGCAGCTTCCGACCGGGTAAGTTTGCTCGCgg  <  1:18965515/35‑1 (MQ=255)
                                  tAATGCAGCTTCCGACCGGGTAAGTTTGCTCGCgg  <  1:781333/35‑1 (MQ=255)
                                  tAATGCAGCTTCCGACCGGGTAAGTTTGCTCGCgg  <  1:4820183/35‑1 (MQ=255)
                                  |                                  
TGAAACGAAGTGGATTAGGTAATACAGCTGCCAGTAATGCAGCTTCCGACCGGGTAAGTTTGCTCGCGG  >  REL606/3284423‑3284491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.