New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 133592652 (0.510)11 (0.170) 5/30 NT 18.7% coding (1724/2676 nt) acnA aconitate hydratase
?REL606 = 2863313 63 (0.980)coding (285/531 nt) ygdP dinucleoside polyphosphate hydrolase

Only 100 of 113 total aligned reads displayed.

CGGGAAATATGAATATCAACCTGGCTTCTGAGCCTATCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1335884‑1335926
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcggccaAAAACAAAAATGGTTTCTCTTGCAGCTGGTGAGC  <  REL606/2863313‑2863280
                                                                             
CGGGAAATATGAATATCAACCTGGCTTCTGAGCCT                                            >  1:18606763/1‑35
CGGGAAATATGAATATCAACCTGGCTTCTGAGCCT                                            >  1:11281469/1‑35
CGGGAAATATGAATATCAACCTGGCTTCTGAGCCT                                            <  1:19628606/35‑1
CGGGAAATATGAATATCAACCTGGCTTCTGAGCCT                                            >  1:15528826/1‑35
CGGGAAATATCAATATCAACCTGGCTTCTGAGCCT                                            <  1:10982209/35‑1
 GGGAAATATGAATATCAACCTGGCTTCTGAGCCTA                                           >  1:11282403/1‑35
 GGGAAATATGAATATCAACCTGGCTTCTGAGCCTA                                           <  1:16630591/35‑1
  GGAAATATGAATATCAACCTGGCTTCTGAGCCTAT                                          <  1:9904265/35‑1
  GGAAATATGAATATCAACCTGGCTTCTGAGCCTAT                                          >  1:16653002/1‑35
  GGAAATATGAATATCAACCTGGCTTCTGAGCCTAT                                          >  1:18867924/1‑35
  GGAAATATGAATATCAACCTGGCTTCTGAGCCTAT                                          <  1:17048441/35‑1
   GAAATATGAATATCAACCTGGCTTCTGAGCCTATt                                         >  1:19441869/1‑34
   GAAATATGAATATCAACCTGGCTTCTGAGCCTATC                                         <  1:17209793/35‑1
   GAAATATGAATATCAACCTGGCTTCTGAGCCTATC                                         <  1:13651905/35‑1
   GAAATATGAATATCAACCTGGCTTCTGAGCCTATC                                         <  1:914295/35‑1
   GAAATATGAATATCAACCTGGCTTCTGAGCCTATC                                         >  1:2683756/1‑35
   GAAATATGAATATAAACCTGGCTTCTGAGCCTATC                                         <  1:8910061/35‑1
    AAATATGAATATCAACCTGGCTTCTGAGCCTATCG                                        >  1:13294302/1‑35
    AAATATGAATATCAACCTGGCTTCTGAGCCTATCG                                        <  1:2999114/35‑1
    AAATATGAATATCAACCTGGCTTCTGAGCCTATCG                                        >  1:16376850/1‑35
    AAATATGAATATCAACCTGGCTTCTGAGCCTATCG                                        <  1:14512485/35‑1
    AAATATGAATATCAACCTGGCTTCTGAGCCTATCG                                        >  1:3649590/1‑35
     nATATGAATATCAACCTGGCTTCTGAGCCTATCGG                                       >  1:9007423/2‑35
     AATATGAATATCAACCTGGCTTCTGAGCCTATCGG                                       <  1:15550058/35‑1
     AATATGAATATCAACCTGGCTTCTGAGCCTATCGG                                       <  1:16632737/35‑1
     AATATGAATATCAACCTGGCTTCTGAGCCTATCGG                                       >  1:16933613/1‑35
     AATATGAATATCAACCTGGCTTCTGAGCCTATCGG                                       <  1:4977603/35‑1
     AATATGAATATCAACCTGGCTTCTGAGCCTATCGG                                       <  1:1364488/35‑1
     AATATGAATATCAACCTGGCTTCTGAGCCTATCGG                                       >  1:12869908/1‑35
     AATATGAATATCAACCTGGCTTCTGAGCCTATCGG                                       >  1:3915386/1‑35
      ATATTAATATCAACCTGGCTTCTGAGCCTATCGGC                                      >  1:13536287/1‑35
      ATATGAATATCAACCTGGCTTCTGAGCCTATCGGC                                      >  1:8122980/1‑35
      ATATGAATATCAACCTGGCTTCTGAGCCTATCGGC                                      >  1:318933/1‑35
      ATATGAATATCAACCTGGCTTCTGAGCCTATCGGC                                      >  1:5702937/1‑35
      ATATGAATATCAACCTGGCTTCTGAGCCTATCGGC                                      >  1:108422/1‑35
       TATGAATATCAACCTGTCTTCTGAGCCTATCGGCC                                     >  1:7710985/1‑35
       TATGAATATCAACCTGGCTTCTGAGCCTATCGGCC                                     <  1:16908851/35‑1
       TATGAATATCAACCTGGCTTCTGAGCCTATCGGCC                                     <  1:1342952/35‑1
       TATGAATATCAACCTGGCTTCTGAGCCTATCGGCC                                     >  1:528603/1‑35
       TATGAATATCAACCTGGCTTCTGAGCCTATCGGCC                                     <  1:15164955/35‑1
       TATGAATATCAACCTGGCTTCTGAGCCTATCGGCC                                     >  1:7430883/1‑35
        ATGAATATCAACCTGGCTTCTGAGTCTATCGGCCA                                    >  1:16902748/1‑35
        ATGAATATCAACCTGGCTTCTGAGCCTATCGGCCA                                    >  1:19104400/1‑35
         TGAATATCAACCTGGCTTCTGAGCCTATCGGCCAA                                   >  1:20276820/1‑35
         TGAATATCAACCTGGCTTCTGAGCCTATCGGCCAA                                   >  1:8389083/1‑35
         TGAATATCAACCTGGCTTCTGAGCATATCGGCCAA                                   >  1:17537086/1‑35
          GAATATCAACCTGGCTTCTGAGCCTCTCGGCCAAA                                  >  1:1198564/1‑35
          GAATATCAACCTGGCTTCTGAGCCTATCGGCCAAA                                  >  1:455294/1‑35
          GAATATCAACCTGGCTTCTGAGCCTATCGGCCAAA                                  >  1:18948172/1‑35
           AATATCAACCTGGCTTCTGAGCCTATCGGCCAAAA                                 >  1:16224850/1‑35
           AATATCAACCTGGCTTCTGAGCCTATCGGCCAAAA                                 >  1:6906230/1‑35
           AATATCAACCTGGCTTCTGAGCCTATCGGCCAAAA                                 >  1:8209961/1‑35
            ATATCAACCTGGCTTCTGAGCCTATCGGCCAAAAA                                >  1:8505782/1‑35
            ATATCAACCTGGCTTCTGAGCCTATCGGCCAAAAA                                >  1:18099676/1‑35
             TATCAACCTGGCTTCTGAGCCTATCGGCCAAAAAa                               >  1:14403607/1‑34
              ATCAACCTGGCTTCTGAGCCTATCGGCCAAAAAag                              >  1:1832644/1‑33
              ATCAACCTGGCTTCTGAGCCTATCGGCCAAAAACA                              >  1:19849716/1‑35
               TCAACCTGGCTTCTGAGCCTATCGGCCAAAAAAAA                             >  1:4909589/1‑35
                CAACCTGGCTTCTGAGCCTATCGGCCAAAAAAAAA                            >  1:2809660/1‑35
                 AACCTGGCTTCTGAGCCTATCGGCCAAAAAAAAAA                           >  1:13953727/1‑35
                 AACCTGGCTTCTGAGCCTATCGGCCAAAAAAAAAA                           >  1:9012896/1‑35
                  ACCTGGCTTCTGAGCCTATCGGCCAAAAAAAAAAA                          >  1:20517051/1‑35
                  ACCTGGCTTCTGAGCCTATCGGCCAAAAAAAAAAA                          >  1:10599462/1‑35
                  ACCTGGCTTCTGAGCCTATCGGCCAAAAAAAAAAA                          >  1:8112101/1‑35
                   CCTGGCTTCTGAGCCTATCGGCCAAAAAAAAAAAa                         >  1:942661/1‑34
                                  TATCGGCCAAAAACAAAAATGGTTTCTCTTGCAGC          <  1:2064640/35‑1
                                  TATCGGCCAAAAACAAAAATGGTTTCTCTTGCAGC          <  1:13027946/35‑1
                                   ATCGGCCAAAAACAAAAATGGTTTCTCTTGCAGCT         >  1:307728/1‑35
                                   ATCGGCCAAAAACAAAAATGGTTTCTCTTGCAGCT         >  1:2171654/1‑35
                                   ATCGGCCAAAAACAAAAATGGTTTCTCTTGCAGCT         <  1:186488/35‑1
                                   ATCGGCCAAAAACAAAAATGGTTTCTCTTGCAGCT         >  1:15353073/1‑35
                                    TCGGCCAAAAACAAAAATGGTTTCTCTTGCAGCTG        >  1:9792742/1‑35
                                    TCGGCCAAAAACAAAAATGGTTTCTCTTGCAGCTG        <  1:1936127/35‑1
                                     CGGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGG       >  1:5993279/1‑35
                                     CGGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGG       <  1:428840/35‑1
                                     CGGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGG       >  1:2518026/1‑35
                                     CGGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGG       >  1:20333113/1‑35
                                     CGGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGG       <  1:17788534/35‑1
                                     CGGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGG       <  1:15316995/35‑1
                                     CGGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGG       <  1:14418622/35‑1
                                     CGGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGG       <  1:11869030/35‑1
                                      GGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGGa      >  1:6574125/1‑34
                                      GGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGGT      >  1:9954162/1‑35
                                      GGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGGT      <  1:5813674/35‑1
                                      GGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGGT      <  1:5685002/35‑1
                                      GGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGGT      >  1:12080486/1‑35
                                      GGCCAAAAACAAAAATGGTTTCTCTTGCAGCTGGT      <  1:2001008/35‑1
                                       GCCAAAAACAAAAATGGTTTCTCTTGCAGCTGGTG     <  1:2638767/35‑1
                                       GCCAAAAACAAAAATGGTTTCTCTTGCAGCTGGTG     <  1:20414368/35‑1
                                        CCAAAAACAAAAATGGTTTCTCTTGCAGCTGGTGA    <  1:10022406/35‑1
                                        CCAAAAACAAAAATGGTTTCTCTTGCAGCTGGTGA    <  1:161321/35‑1
                                        CCAAAAACAAAAATGGTTTCTCTTGCAGCTGGTGA    >  1:18376650/1‑35
                                        CCAAAAACAAAAATGGTTTCTCTTGCAGCTGGTGA    >  1:5405484/1‑35
                                         CAAAAACAAAAATGGTTTCTCTTGCAGCTGGTGAG   >  1:4203539/1‑35
                                         CAAAAACAAAAATGGTTTCTCTTGCAGCTGGTGAG   <  1:13219610/35‑1
                                          AAAAGCAAAAATGGTTTCTCTTGCAGCTGGTGAGC  <  1:18907151/35‑1
                                          AAAAACAAAAATGGTTTCTCTTGCAGCTGGTGAGC  <  1:15782286/35‑1
                                          AAAAACAAAAATGGTTTCTCTTGCAGCTGGTGAGC  <  1:4441756/35‑1
                                          AAAAACAAAAATGGTTTCTCTTGCAGCTGGTGAGC  >  1:11482660/1‑35
                                          AAAAACAAAAATGGTTTCTCTTGCAGCTGGTGAGC  <  1:10291850/35‑1
                                                                             
CGGGAAATATGAATATCAACCTGGCTTCTGAGCCTATCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1335884‑1335926
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcggccaAAAACAAAAATGGTTTCTCTTGCAGCTGGTGAGC  <  REL606/2863313‑2863280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.