New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 29354872 (0.700)8 (0.090) 5/42 NT 9.4% coding (673/855 nt) ykgD predicted DNA‑binding transcriptional regulator
?REL606 2499664 = 92 (1.020)coding (171/951 nt) talA transaldolase A

Only 100 of 180 total aligned reads displayed.

AATATGAGCATTTAATAGACGATGCTATCGCCTGGGGTAAAAAAAATGGCAAGACCCAGGAACAACAGG  >  REL606/2499630‑2499698
                                  |                                  
aaTATGGGCATTTAATAGACGATGCTATCGCCCgg                                    >  1:18431562/1‑35 (MQ=38)
aaTATGAGCATTTAATAGACGATTCTATCGCCTgg                                    >  1:15599357/1‑35 (MQ=255)
aaTATGAGCATTTAATAGACGATGCTATCGCCTgg                                    <  1:13544099/35‑1 (MQ=255)
aaTATGAGCATTTAATAGACGATGCTATCGCCTgg                                    >  1:974499/1‑35 (MQ=255)
 tccgtgatgtttccggaaccacgccgctggctggg                                   >  1:12369593‑M2/34‑35 (MQ=255)
 tccgtgatgtttccggaaccacgccgctggctggg                                   >  1:9781566‑M2/34‑35 (MQ=255)
 atatGAGCATTTAATAGACGATGCTATCGCGTggg                                   <  1:8477856/35‑1 (MQ=255)
 atatGAGCATTTAATAGACGATGCTATCGCCTggg                                   >  1:2891292/1‑35 (MQ=255)
 atatGAGCATTTAATAGACGATGCTATCGCCTggg                                   >  1:20439684/1‑35 (MQ=255)
 atatGAGCATTTAATAGACGATGCTATCGCCTggg                                   >  1:20334768/1‑35 (MQ=255)
 atatGAGCATTTAATAGACGATGCTATCGCCTggg                                   <  1:5061545/35‑1 (MQ=255)
  tatGAGCATTTAATAGACGATGCTATCGCCTgggg                                  >  1:18987084/1‑35 (MQ=255)
  tatGAGCATTTAATAGACGATGCTATCGCCTgggg                                  >  1:16614305/1‑35 (MQ=255)
  ccgtgatgtttccggaaccacgccgctggctgggg                                  >  1:3489510‑M2/33‑35 (MQ=255)
   cgtgatgtttccggaaccacgccgctggctggggg                                 >  1:4707327‑M2/32‑34 (MQ=255)
   atGAGCATTTAATAGACGATGCTATCGCCTggggg                                 >  1:18632154/1‑34 (MQ=255)
   atGAGCATTTAATAGACGATGCTATCGCCTGGGGt                                 <  1:19388618/35‑1 (MQ=255)
    gtgatgtttccggaaccacgccgctggctggggga                                >  1:3515771‑M2/31‑33 (MQ=255)
    gtgatgtttccggaaccacgccgctggctgGGgtt                                >  1:1034722‑M2/31‑34 (MQ=255)
    gtgatgtttccggaaccacgccgctggctgGGgtg                                >  1:14875917‑M2/31‑34 (MQ=255)
     tgatgtttccggaaccacgccgctggctgggggtt                               >  1:18537440‑M2/30‑32 (MQ=255)
     tgatgtttccggaaccacgccgctggctgGGGTaa                               >  1:18949629‑M2/30‑35 (MQ=255)
     gAGCATTTAATAGACGATGCTATCGCCTGGGGGaa                               >  1:2260724/1‑35 (MQ=255)
      aGCATTTAATAGACGATGCTATCGCCTGGGGGaaa                              >  1:13311370/1‑35 (MQ=255)
       gCATTTAATAGACGATGCTATCGCCTGGGGTaaaa                             <  1:17047785/35‑1 (MQ=255)
       gCATTTAATAGACGATGCTATCGCCTGGGGGaaaa                             >  1:105348/1‑35 (MQ=255)
       gCATTTAATAGACGATGCTATCGCCTGGGGGaaaa                             >  1:8254325/1‑35 (MQ=255)
         gtttccggaaccacgccgctggctgGGGTtaaaaa                           >  1:19848010‑M2/26‑35 (MQ=255)
         gtttccggaaccacgccgctggctgGGGTaacaaa                           >  1:20106708‑M2/26‑35 (MQ=255)
         aTTTAATAGACGATGCTATCGCCTGGGGGaaaaaa                           >  1:7212463/1‑35 (MQ=255)
         aTTTAATAGACGATGCTATCGCCTGGGGGaaaaaa                           >  1:13243287/1‑35 (MQ=255)
          tttccggaaccacgccgctggctgGGGTtaaaaaa                          >  1:5147344‑M2/25‑35 (MQ=255)
          tttccggaaccacgccgctggctgGGGTtaaaaaa                          >  1:13866670‑M2/25‑35 (MQ=255)
          tttAATAGACGATGCTATCGCCTGGGGTaaaaaaa                          >  1:11038334/1‑35 (MQ=255)
          tttAATAGACGATGCTATCGCCTGGGGTaaaaaaa                          <  1:15741294/35‑1 (MQ=255)
           ttAATAGACGATGCTATCGCCTGGGGTaaaaaaaa                         <  1:17476554/35‑1 (MQ=255)
           ttAATAGACGATGCTATCGCCTGGGGTaaaaaaaa                         <  1:18132313/35‑1 (MQ=255)
            tAATAGACGATGCTATCGCCTGGGGTAAAAAAAAt                        <  1:17414581/35‑1 (MQ=255)
            tAATAGACGATGCTATCGCCTGGGGGAAAAAAAAt                        >  1:15944420/1‑35 (MQ=255)
            tAATAGACGATGCTATCGCCTGGGGGAAAAAAAAt                        >  1:12976725/1‑35 (MQ=255)
             ccggaaccacgccgctggctgGGGTTAAAAAAATg                       >  1:6788244‑M2/22‑35 (MQ=255)
             aaTAGACGATGCTATCGCCTGGGGTAAAAAAAATg                       <  1:17544196/35‑1 (MQ=255)
              aTAGACGATGCTATCGCCTGGGGTAAAAAAAATgg                      <  1:12095234/35‑1 (MQ=255)
               tAGACGATGCTATCGCCTGGGGTAAAAAAAATGGc                     <  1:13882149/35‑1 (MQ=255)
               tAGACGATGCTATCGCCTGGGGTAAAAAAAATGGc                     <  1:12337819/35‑1 (MQ=255)
               tAGACGATGCTATCGCCTGGGGTAAAAAAAATGGc                     <  1:7177500/35‑1 (MQ=255)
               tAGACGATGCTATCGCCTGGGGTAAAAAAAATGGc                     <  1:7580239/35‑1 (MQ=255)
               tAGACGATGCTATCGCCTGGGGTAAAAAAAAAgga                     >  1:4524085/1‑34 (MQ=255)
               tAGACGATGCTATCGCCTGGGGGAAAAAAAATGGc                     >  1:13805328/1‑35 (MQ=255)
               tAGACGATGCTATCGCCTGGGGGAAAAAAAATGGc                     >  1:5335626/1‑35 (MQ=255)
               tAGACGATGCTATCGCCTGGGGGAAAAAAAATGGc                     >  1:16033418/1‑35 (MQ=255)
                aGACGATGCTATCGCCTGGGGTAAAAAAAATggga                    >  1:20267763/1‑33 (MQ=255)
                aGACGATGCTATCGCCTGGGGGAAAAAAAATGGCa                    >  1:7395521/1‑35 (MQ=255)
                 gACGATGCTATCGCCTGGGGTAAAAAAAATGGCaa                   <  1:6269468/35‑1 (MQ=255)
                  aCGATGCTATCGCCTGGGGTAAAAAAAATGGCAAg                  <  1:62184/35‑1 (MQ=255)
                  aCGATGCTATCGCCTGGGGTAAAAAAAATGGCAAg                  >  1:15841047/1‑35 (MQ=255)
                  aCGATGCTATCGCCTGGGGTAAAAAAAATGGCAAg                  <  1:16737252/35‑1 (MQ=255)
                  aCGATGCTATCGCCTGGGGTAAAAAAAATGGCAAg                  >  1:11337358/1‑35 (MQ=255)
                    gATGCTATCGCCTGGGGTAAAAAAAATGGCCAGAc                >  1:17881604/1‑35 (MQ=255)
                    gATGCTATCGCCTGGGGTAAAAAAAATGGCAAGAc                <  1:9526727/35‑1 (MQ=255)
                    gATGCTATCGCCTGGGGTAAAAAAAATGGCAAGAc                >  1:6170146/1‑35 (MQ=255)
                    gATGCTATCGCCTGGGGTAAAAAAAATGGCAAGAc                >  1:3704762/1‑35 (MQ=255)
                    gATGCTATCGCCTGGGGTAAAAAAAATGGCAAGAc                >  1:13572969/1‑35 (MQ=255)
                    gATGCTATCGCCTGGGGTAAAAAAAATGGCAAGAc                >  1:3020015/1‑35 (MQ=255)
                    gATGCTATAGCCTGGGGTAAAAAAAATGGCAAGAc                <  1:5320640/35‑1 (MQ=255)
                     aTGCTATCGCCTGGGGTAAAAAAAATGGCAAGAcc               >  1:14357369/1‑35 (MQ=255)
                     aTGCTATCGCCTGGGGTAAAAAAAATGGCAAGAcc               <  1:16918617/35‑1 (MQ=255)
                       gCTATCGCCTTGGGTAAAAAAAATGGCAAGACCCa             >  1:4073838/1‑35 (MQ=255)
                       gCTATCGCCTGGTGTAAAAAAAATGGCAAGACCCa             >  1:4466521/1‑35 (MQ=255)
                       gCTATCGCCTGGGGTAAAAAAAATGGCAAGACCCa             >  1:3856468/1‑35 (MQ=255)
                       gCTATCGCCTGGGGTAAAAAAAATGGCAAGACCCa             >  1:11238683/1‑35 (MQ=255)
                       gCTATCGCCTGGGGTAAAAAAAATGGCAAGACCCa             <  1:11372496/35‑1 (MQ=255)
                        cTATCGCCTGGGGTAAAAAAAATGGCAAGACCCAg            <  1:704287/35‑1 (MQ=255)
                         tATCGCCTGGTGTAAAAAAAATGGCAAGACCCAgg           >  1:7275896/1‑35 (MQ=255)
                         tATCGCCTGGGGTAAAAAAAATGGCAAGACCCAgg           <  1:3281853/35‑1 (MQ=255)
                         tATAGCCTGGGGTAAAAAAAATGGCAAGACCCAgg           <  1:20394630/35‑1 (MQ=255)
                          aTCGCCTGGGGTAAAAAAAATGGCAAGACCCAGGa          <  1:8825923/35‑1 (MQ=255)
                          aTCGCCTGGGGTAAAAAAAATGGCAAGACCCAGGa          >  1:15101470/1‑35 (MQ=255)
                           tCGCCTGGGGTAAAAAAAATGGCAAGACCCAGGaa         >  1:1534351/1‑35 (MQ=255)
                           tCGCCTGGGGTAAAAAAAATGGCAAGACCCAGGaa         <  1:5495568/35‑1 (MQ=255)
                            cGCCTGGGGTAAAAAAAATGGCAATACCCAGGaac        >  1:5693233/1‑35 (MQ=255)
                            cGCCTGGGGTAAAAAAAATGGCAAGACCCAGGaac        <  1:8090467/35‑1 (MQ=255)
                             gCCTGGGGTAAAAAAAATGGCAAGACCCAGGaaca       >  1:2404720/1‑35 (MQ=255)
                             gCCTGGGGTAAAAAAAATGGCAAGACCCAGGaaca       >  1:17956849/1‑35 (MQ=255)
                             gCCTGGGGTAAAAAAAATGGCAAGACCCAGGaaca       <  1:7213536/35‑1 (MQ=255)
                              ccTGGGGTAAAAAAAATGGCAAGACCCAGGaacaa      >  1:8116715/1‑35 (MQ=255)
                              ccTGGGGTAAAAAAAATGGCAAGACCCAGGaacaa      <  1:10379904/35‑1 (MQ=255)
                              ccTGGGGTAAAAAAAATGGCAAGACCCAGGaacaa      >  1:12712128/1‑35 (MQ=255)
                              ccTGGGGTAAAAAAAATGGCAAGACCCAGGaacaa      <  1:19650117/35‑1 (MQ=255)
                              ccTGGGGTAAAAAAAATGGCAAGACCCAGGaacaa      <  1:11494256/35‑1 (MQ=255)
                               ctgGGGTAAAAAAAATGGCAAGCCCCAGGaacaac     <  1:15492635‑M2/32‑1 (MQ=255)
                                tgGGGTAAAAAAAATGGCAAGGCCCAGGAacaaca    <  1:3333261‑M2/33‑1 (MQ=255)
                                cgGGGTAAAAAAAATGGCAAGACCCAGGAacaaca    <  1:11342634‑M2/33‑1 (MQ=255)
                                 gGGGTAAAAAAAATGGCAAGACCCAGGAACAACAg   >  1:12676865‑M2/2‑35 (MQ=255)
                                 gGGGTAAAAAAAATGGCAAGACCCAGGAACAACAg   >  1:5784354‑M2/2‑35 (MQ=255)
                                 gGGGTAAAAAAAATGGCAAGACCCAGGAACAACAg   <  1:312491‑M2/34‑1 (MQ=255)
                                 gGGGTAAAAAAAATGGCAAGACCCAGGAACAACAg   >  1:9083873‑M2/2‑35 (MQ=255)
                                 gGGGTAAAAAAAATGGCAAGACCCAGGAACAACAg   >  1:365293‑M2/2‑35 (MQ=255)
                                  gggTAAAAAAAATGGCAAGACCCAGGAACAACAgg  <  1:4149239/35‑1 (MQ=255)
                                  gggTAAAAAAAATGGCAAGACCCAGGAACAACAgg  <  1:9066450/35‑1 (MQ=255)
                                  |                                  
AATATGAGCATTTAATAGACGATGCTATCGCCTGGGGTAAAAAAAATGGCAAGACCCAGGAACAACAGG  >  REL606/2499630‑2499698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.