New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 947579 =44 (0.430)9 (0.090) 4/46 NT 13.7% coding (442/1767 nt) cydD fused cysteine transporter subunits of ABC superfamily: membrane component/ATP‑binding component
?REL606 = 3484563 71 (0.720)coding (887/1017 nt) rtcA RNA 3'‑terminal‑phosphate cyclase

Only 100 of 121 total aligned reads displayed.

GCATGAGGGATGGGCGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGC  >  REL606/3484529‑3484597
                                  |                                  
gCATGAGGGATGGGCGACCGTAAATTCCCCCgcgc                                    >  1:19532754/1‑35 (MQ=255)
gCATGAGGGATGGGCGACCGTAAATTCCCCCgcgc                                    >  1:17319035/1‑35 (MQ=255)
 cATGAGGGATGGGCGACCGTAAATTCCCCCGCGCc                                   <  1:8169128‑M2/35‑2 (MQ=255)
 cATGAGGGATGGGCGACCGTAAATTCCCCCGCGCc                                   >  1:16528948‑M2/1‑34 (MQ=255)
 cATGAGGGATGGGCGACCGTAAATTCCCCCGCGCc                                   <  1:14568140‑M2/35‑2 (MQ=255)
  aTGAGGGATGGGCGACCGTAAATTCCCCCGcgccc                                  <  1:8518292/35‑1 (MQ=255)
  aTGAGGGATGGGCGACCGTAAATTCCCCCGcgccc                                  <  1:1146710/35‑1 (MQ=255)
   tGAGGGATGGGCGACCGTAAATTCCCCCGcgccct                                 >  1:6289445/1‑34 (MQ=255)
   tGAGGGATGGGCGACCGTAAATTCCCCCGcgcccg                                 <  1:10548660/35‑1 (MQ=255)
   tGAGCGATGGGCGACCGTAAATTCCCCCGcgcccg                                 >  1:10464501/1‑35 (MQ=255)
    gAGGGATGGGCGACCGTAAATTCCCCCGcgcccgc                                >  1:8065925/1‑35 (MQ=255)
    gAGGGATGGGCGACCGTAAATTCCCCCGcgcccgc                                <  1:19374043/35‑1 (MQ=255)
    gAGGGATGGGCGACCGTAAATTCCCCCGcgcccgc                                >  1:11554370/1‑35 (MQ=255)
    gAGGGATGGGCGACCGTAAATTCCCCCGcgcccgc                                <  1:1162303/35‑1 (MQ=255)
     aGGGATGGGCGACCGTAAATTCCCCCGcgcccgcc                               >  1:9896588/1‑35 (MQ=255)
     aGGGATGGGCGACCGTAAATTCCCCCGcgcccgcc                               >  1:11693094/1‑35 (MQ=255)
      gggATGGGCGACCGTAAATTCCCCCGCGCCCGCCa                              <  1:4739273/35‑1 (MQ=255)
      gggATGGGCGACCGTAAATTCCCCCGCGCCCGCCa                              >  1:5877417/1‑35 (MQ=255)
      gggATGGGCGACCGTAAATTCCCCCGCGCCCGCCa                              <  1:17189534/35‑1 (MQ=255)
      gggATGGGCGACCGTAAATTCCCCCGCGCCCGCCa                              >  1:9878340/1‑35 (MQ=255)
       ggATGGGCGACCGTAAATTCCCCCGCGCCCGCCAg                             <  1:15875635/35‑1 (MQ=255)
       ggATGGGCGACCGTAAATTCCCCCGCGCCCGCCAg                             <  1:1535891/35‑1 (MQ=255)
       ggATGGGCGACCGTAAATTCCCCCGCGCCCGCCAg                             <  1:20318456/35‑1 (MQ=255)
       ggATGGGCGACCGTAAATTCCCCCGCGCCCGCCAg                             <  1:6033656/35‑1 (MQ=255)
        gATGGGCGACCGTAAATTCCCCCGCGCCCGCCAgc                            >  1:11761012/1‑35 (MQ=255)
        gATGGGCGACCGTAAATTCCCCCGCGCCCGCCAgc                            >  1:15201067/1‑35 (MQ=255)
         aTGGGCGACCGTAAATTCCCCCGCGCCCGCCAgcg                           >  1:680719/1‑35 (MQ=255)
         aTGGGCGACCGTAAATTCCCCCGCGCCCGCCAgcg                           <  1:4268141/35‑1 (MQ=255)
         aTGGGCGACCGTAAATTCCCCCGCGCCCGCCAgcg                           >  1:18197404/1‑35 (MQ=255)
           gggCGACCGTAAATTCCCCCGCGCCCGCCAGCGcc                         >  1:12325869/1‑35 (MQ=255)
           gggCGACCGTAAATTCCCCCGCGCCCGCCAGCGcc                         >  1:10922809/1‑35 (MQ=255)
             gCGACCGTAAATTCCCCCGCGCCCGCCAGCGCCAt                       >  1:12629405/1‑35 (MQ=255)
             gCGACCGTAAATTCCCCCGCGCCCGCCAGCGCCAt                       <  1:13845245/35‑1 (MQ=255)
              cGACCGTAAATCCCCCCGCGCCCGCCAGCGCCATc                      <  1:8853666/35‑1 (MQ=255)
               gACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCg                     >  1:8013993/1‑35 (MQ=255)
               gACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCg                     >  1:4700800/1‑35 (MQ=255)
                cccGTAAATCCCCCCGCGCCCGCCAGCGCCATCgg                    <  1:16198192/34‑1 (MQ=255)
                cccGTAAATCCCCCCGCCCCCGCCAGCGCCATCgg                    <  1:17433309/34‑1 (MQ=25)
                aCCGTAAATTCCCCCGCGCCCGCCAGCGCCATCgg                    >  1:18290097/1‑35 (MQ=255)
                aCCGTAAATTCCCCCGCGCCCGCCAGCGCCATCgg                    >  1:13690850/1‑35 (MQ=255)
                aCCGTAAATTCCCCCGCGCCCGCCAGCGCCATCgc                    >  1:16463568/1‑34 (MQ=255)
                 ccttAAATCCCCCCGCCCCCGCCAGCGCCATCGGt                   <  1:18639295/32‑1 (MQ=21)
                 ccGTAAATTCCCCCGCGCCCGCCAGCGCCATCggc                   >  1:17551189/1‑34 (MQ=255)
                 ccGTAAATTCCCCCGCGCCCGCCAGCGCCATCggc                   >  1:11843867/1‑34 (MQ=255)
                 ccGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGt                   >  1:16848633/1‑35 (MQ=255)
                 ccGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGt                   >  1:11316087/1‑35 (MQ=255)
                 ccGTAAATTCCCCCGCGCCCGCAAGCGCCATCGGt                   <  1:1343848/35‑1 (MQ=255)
                 ccGTAAATCCCCCCGCGCCCGCCAGCGCCATCGGt                   <  1:10552177/35‑1 (MQ=255)
                  cGTAAATCCCCCCGCGCCCGCCAGCGCCATCGGTa                  <  1:6051979/35‑1 (MQ=255)
                   gTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAg                 >  1:6190682/1‑35 (MQ=255)
                   gTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAg                 >  1:7833129/1‑35 (MQ=255)
                   gTAAATTCCCCCGCGCCCGCCAGCGCCATCGGGAg                 >  1:11485375/1‑35 (MQ=255)
                   gTAAATCCCCCCGCCCCCGCCAGCGCCATCGGTAg                 <  1:12604994/35‑1 (MQ=25)
                    tAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAgg                >  1:16627672/1‑34 (MQ=255)
                    tAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAgg                >  1:7033035/1‑34 (MQ=255)
                    tAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGc                >  1:5842584/1‑35 (MQ=255)
                    tAAATCCCCCCGCCCCCGCCAGCGCCATCGGTAGc                <  1:19382842/35‑1 (MQ=25)
                    tAAATCCCCCCGCCCCCGCCAGCGCCATCGGTAGc                <  1:5298487/35‑1 (MQ=25)
                     aaaTTCCCCCGCGCCCGCCAGCGCCATCGGTAgga               >  1:1927270/1‑33 (MQ=255)
                     aaaTTCCCCCGCGCCCGCCAGCGCCATCGGTAgga               >  1:1213371/1‑33 (MQ=255)
                     aaaTTCCCCCGCGCCCGCCAGCGCCATCGGTAGCa               >  1:16305335/1‑35 (MQ=255)
                      taTTCCCCCCTGCCGCCAGCGACATTGGAAGCAca             <  1:3718917/34‑2 (MQ=25)
                      aaTTCCCCCGCGCCCGCCAGCGCCATCGGTAGCAc              >  1:12051005/1‑35 (MQ=255)
                      aaTCCCCCCGCGCCCGCCAGCGCCATCGGTAGCAc              <  1:6480980/35‑1 (MQ=255)
                      aaTCCCCCCGCGCCCGCCAGCGCCATCGGTAGCAc              <  1:961209/35‑1 (MQ=255)
                      aaTCCCCCCGCGCCCGCCAGCGCCATCGGTAGCAc              <  1:12438760/35‑1 (MQ=255)
                       atccccccGCCCCCGCCAGCGCCATCGGTAGCAcc             <  1:5431069/32‑1 (MQ=25)
                        ttCCCCCGTGCCGCCAGCGACATTGGAAGCAcaaa           <  1:10524173/35‑4 (MQ=25)
                        tccccccCCCCCCGCCAGCGCCATCGGTAGCACCa            <  1:8688848/33‑1 (MQ=25)
                        tccccacGCCCCCGCCAGCGCCATCGGTAGAACCa            <  1:13522376/33‑1 (MQ=18)
                          cccccGCGCCCGCCAGCGCCATCGGTAGCACCAGt          <  1:2512668/35‑1 (MQ=255)
                          cccccGCCCctgccagcgccatttgcggcagatag          >  1:8142361‑M2/1‑9 (MQ=255)
                          cccccCCCCCCGCCAGCGCCATCGGTAGCACCAGt          <  1:4908542/35‑1 (MQ=37)
                          cccccCCCCCCGCCAGCGCCATCGGTAGCACCAGt          <  1:13802221/35‑1 (MQ=37)
                           ccccGCGCCCGCCAGCGCCATCGGTAGGACCAgct         >  1:15154795/1‑33 (MQ=37)
                           ccccGCGCCCGCCAGCGCCATCGGTAGCACCAGtt         <  1:11438087/35‑1 (MQ=255)
                           ccccGCGCACGCCAGCGCCATCGGTAGCACCAGtt         <  1:7211966/35‑1 (MQ=255)
                           ccccGCCCctgccagcgccatttgcggcagatagc         >  1:7955494‑M2/1‑8 (MQ=255)
                           ccccGCCCctgccagcgccatttgcggcagatagc         >  1:7841236‑M2/1‑8 (MQ=255)
                           ccccGCCCctgccagcgccatttgcggcagatagc         >  1:85370‑M2/1‑8 (MQ=255)
                            cccGCGCCCGCCAGCGCCATCGGTAGCCCCAGCTg        >  1:3907659/1‑35 (MQ=25)
                            cccGCCCctgccagcgccatttgcggcagatagcg        >  1:8993110‑M2/1‑7 (MQ=255)
                            cccGCCCctgccagcgccatttgcggcagatagcg        >  1:12936375‑M2/1‑7 (MQ=255)
                             ccGCCCctgccagcgccatttgcggcagatagcgt       >  1:15578649‑M2/1‑6 (MQ=255)
                             ccGCCCctgccagcgccatttgcggcagatagcgt       >  1:7857771‑M2/1‑6 (MQ=255)
                              cgcgCCCGCCAGCGCCATCGGTAGCACCAGTTGGt      <  1:937433/35‑1 (MQ=255)
                              cgccCctgccagcgccatttgcggcagatagcgtg      >  1:12107323‑M2/1‑5 (MQ=255)
                               gcgcCCGCCAGCGCCATCGGTAGCACCAGTTGGTc     <  1:11217639/35‑1 (MQ=255)
                               acccctgccagcgccatttgcggcagatagcgtgc     >  1:1819377‑M2/4‑4 (MQ=255)
                               acccctgccagcgccatttgcggcagatagcgtgc     >  1:19333036‑M2/4‑4 (MQ=255)
                                cccccgccAGCGCCATCGGTAGCACCAGTTGGTCa    <  1:16092491/33‑1 (MQ=255)
                                 gcccgccAGCGCCATCGGTAGGACCCGTTTGTTAg   >  1:17402227/1‑35 (MQ=16)
                                 gcccgccAGCGCCATCGGTAGCACCAGTTGGTCAg   <  1:1823273/35‑1 (MQ=255)
                                 gcccgccAGCGCCATCGGTAGCACCAGTTGGTCAg   <  1:12893617/35‑1 (MQ=255)
                                 ccctgccagcgccatttgcggcagatagcgtgcat   >  1:7648641‑M2/2‑2 (MQ=255)
                                 ccctgccagcgccatttgcggcagatagcgtgcat   >  1:434466‑M2/2‑2 (MQ=255)
                                  cctgccagcgccatttgcggcagatagcgtgcata  >  1:2678884‑M2/1‑1 (MQ=255)
                                  cctgccagcgccatttgcggcagatagcgtgcata  >  1:2862917‑M2/1‑1 (MQ=255)
                                  cctgccagcgccatttgcggcagatagcgtgcata  >  1:4216318‑M2/1‑1 (MQ=255)
                                  cccgccAGCGCCATCGGTAGCACCAGTTGGTCAGc  <  1:16208435/35‑1 (MQ=255)
                                  |                                  
GCATGAGGGATGGGCGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGC  >  REL606/3484529‑3484597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.