New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2650606 =NA (NA)12 (0.190) 3/30 NT 17.1% noncoding (72/2906 nt) rrlG 23S ribosomal RNA
?REL606 = 2867475 93 (0.910)coding (1008/1194 nt) ygeD predicted inner membrane protein

Only 100 of 468 total aligned reads displayed.

TTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCG  >  REL606/2867441‑2867509
                                  |                                  
 ttGTACTGCAATCGCATTCCCCGCCCCGACGCttt                                   <  1:3401681/35‑1 (MQ=255)
 ttGTACTGCAATCGCATTCCCCGCCCCGACGCttt                                   >  1:4022784/1‑35 (MQ=255)
  tGTACTGCAATCGCATTCCCCGCCCCGACGCtttt                                  >  1:19256176/1‑35 (MQ=255)
  tGTACTGCAATCGCATTCCCCGCCCCGACGCtttt                                  >  1:15142732/1‑35 (MQ=255)
    tACTGCAATCGCATTCCCCGCCCCGACGCtttttt                                >  1:17881898/1‑35 (MQ=255)
       tGCAATCGCATTCCCCGCCCCGACGCTTTTTTTAc                             >  1:11612557/1‑35 (MQ=255)
        gCAATCGCATTCCACGCCCCGACGCTTTTTTTAcc                            <  1:15866914/35‑1 (MQ=255)
          aaTCGCATTCCCCGCCCCGACGCTTTTTTTAcccc                          >  1:5750146/1‑35 (MQ=255)
          aaTCGCATTCCCCGCCCCGACGCTTTCTTTAcccc                          <  1:10876944/35‑1 (MQ=255)
            tCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGc                        >  1:19562883/1‑35 (MQ=255)
              gCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTc                      <  1:2938606/35‑1 (MQ=255)
              gCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTc                      <  1:17711353/35‑1 (MQ=255)
                 tccccagccccgACGCTTTTTTTACCCCGCTCCTg                   <  1:5410125/33‑1 (MQ=38)
                  tCCCCTCCCCGACGCTTatcgcagattagcacgtc                  >  1:88163‑M2/1‑17 (MQ=255)
                    cccgccccgACGCTTTTTTTACCCCGCTCCTGTAg                <  1:6227345/35‑1 (MQ=255)
                    ccccccccgACGCTTatcgcagattagcacgtcct                >  1:19175011‑M2/1‑15 (MQ=255)
                     cctccccgACGCTTatcgcagattagcacgtcctt               >  1:18079272‑M2/1‑14 (MQ=255)
                      cttcccgacgCTTatcgcagattagcacgtccttc              >  1:10067482‑M2/4‑13 (MQ=255)
                      cgccccgACGCTTTTTTTACCCCGCTCCTGTAGCa              >  1:2759938/1‑35 (MQ=255)
                       ttcccgacGCTTatcgcagattagcacgtccttca             >  1:18998605‑M2/3‑12 (MQ=255)
                       gccccgACGCTTTTTTTACCCCGCTCCTGTAGCaa             >  1:13700496/1‑35 (MQ=255)
                       gccccgACGCTTTTTTTACCCCGCTCCTGTAGCaa             >  1:7702387/1‑35 (MQ=255)
                       gccccgACGCTTTTTTTACCCCGCTCCTGTAGCaa             <  1:14342946/35‑1 (MQ=255)
                       gccccgACGCTTTTTTTACCCCGCTCCTGTAGCaa             >  1:18802869/1‑35 (MQ=255)
                       cccccgaCGCTTatcgcagattagcacgtccttca             >  1:788325‑M2/2‑12 (MQ=255)
                        tcccgaCGCTTatcgcagattagcacgtcattcat            >  1:6869580‑M2/2‑11 (MQ=255)
                         cccgACGCTTatcgcagattagcacgtccttcatc           >  1:17807967‑M2/1‑10 (MQ=255)
                         cccgACGCTTatcgcagattagcacgtccttcatc           >  1:14768225‑M2/1‑10 (MQ=255)
                         cccgACGCTTatcgcagattagcacgtccttcatc           >  1:10455342‑M2/1‑10 (MQ=255)
                         cccgACGCTTTTTTTACCCCGCTCCTGTAGCAACg           >  1:724942/1‑35 (MQ=255)
                         cccgACGCTTTTTTTACCCCGCTCCTGTAGCAACg           >  1:2195871/1‑35 (MQ=255)
                          ncgACGCTTatcgcagattagcacgtccttcatcg          <  1:15787725‑M2/35‑27 (MQ=255)
                          ccgACGCTTatcgcagattagcacgtccttcatcg          >  1:6077027‑M2/1‑9 (MQ=255)
                          ccgACGCTTatcgcagattagcacgtccttcatcg          >  1:20059836‑M2/1‑9 (MQ=255)
                          ccgACGCTTatcgcagattagcacgtccttcatcg          <  1:14066070‑M2/35‑27 (MQ=255)
                          ccgACGCTTatcgcagattagcacgtccttcatcg          <  1:13806731‑M2/35‑27 (MQ=255)
                          ccgACGCTTatcgcagattagcacgtccttcatcg          >  1:10102007‑M2/1‑9 (MQ=255)
                          ccgACGCTTatcgcagattagcacgtccttcatcg          >  1:12159596‑M2/1‑9 (MQ=255)
                          ccgACGCTTatcgcagattagcacgtccttcatcg          <  1:6976258‑M2/35‑27 (MQ=255)
                          ccgACGCTTatcgcagattagcacgtccttcatcg          >  1:16985645‑M2/1‑9 (MQ=255)
                          ccgACGCTTatcgcagattagcacgtccttcatcg          <  1:3616070‑M2/35‑27 (MQ=255)
                          ccgACGCTTTTTTTACCCCGCTCCTGTAGCAACGc          >  1:17625437/1‑35 (MQ=255)
                          cagacGCTTatcgcagattagcacgtccttcatcg          >  1:9144504‑M2/3‑9 (MQ=255)
                           cgACGCTTatcgcggattagcacgtccttcatcgc         >  1:16094547‑M2/1‑8 (MQ=255)
                           cgACGCTTatcgcagattagcacgtccttcatcgc         <  1:19675897‑M2/35‑28 (MQ=255)
                           cgACGCTTatcgcagattagcacgtccttcatcgc         <  1:4527390‑M2/35‑28 (MQ=255)
                           cgACGCTTatcgcagattagcacgtccttcatcgc         <  1:5636590‑M2/35‑28 (MQ=255)
                           cgACGCTTatcgcagattagcacgtccttcatcgc         <  1:19805441‑M2/35‑28 (MQ=255)
                           cgACGCTTatcgcagattagcacgtccttcatcgc         >  1:12753141‑M2/1‑8 (MQ=255)
                           cgACGCTTatcgcagattagcacgtccttcatcgc         >  1:14572487‑M2/1‑8 (MQ=255)
                           cgACGCTTatcgcagattagcacgtccttcatcgc         >  1:13904556‑M2/1‑8 (MQ=255)
                           cgACGCTTatcgcagattagcacgtccttaatcgc         >  1:11982552‑M2/1‑8 (MQ=255)
                           cgACGCTTTTTTTACCCCGCTCCTGTAGCAACGCa         >  1:12240009/1‑35 (MQ=255)
                            gACGCTTatcgcagattagcacgtccttcatcgcc        <  1:18257889‑M2/35‑29 (MQ=255)
                            gACGCTTatcgcagattagcacgtccttcatcgcc        <  1:16751209‑M2/35‑29 (MQ=255)
                            gACGCTTatcgcagattagcacgtccttcatcgcc        <  1:13525907‑M2/35‑29 (MQ=255)
                            gACGCTTatcgcagattagcacgtccttcatcgcc        <  1:12914846‑M2/35‑29 (MQ=255)
                             ccgCTTatcgcagattagcacgtccttcatcgcct       >  1:10754698‑M2/2‑6 (MQ=255)
                             aCGCTTatcgcagattagcacgtccttcatcgcct       >  1:9788264‑M2/1‑6 (MQ=255)
                             aCGCTTatcgcagattagcacgtccttcatcgcct       >  1:9012419‑M2/1‑6 (MQ=255)
                             aCGCTTatcgcagattagcacgtccttcatcgcct       <  1:5841658‑M2/35‑30 (MQ=255)
                             aCGCTTatcgcagattagcacgtccttcatcgcct       >  1:20403234‑M2/1‑6 (MQ=255)
                             aCGCTTatcgcagattagcacgtccttcatcgcct       <  1:1535524‑M2/35‑30 (MQ=255)
                             aCGCTTTTTTTACCCCGCTCCTGTAGCAACGCAtt       <  1:3063494/35‑1 (MQ=255)
                              cGCTTatcgcagattagcacgtccttcatcgcctc      >  1:9399589‑M2/1‑5 (MQ=255)
                              cGCTTatcgcagattagcacgtccttcatcgcctc      <  1:1117821‑M2/35‑31 (MQ=255)
                              cGCTTatcgcagattagcacgtccttcatcgcctc      >  1:8108082‑M2/1‑5 (MQ=255)
                              cGCTTatcgcagattagcacgtccttcatcgcctc      <  1:13251557‑M2/35‑31 (MQ=255)
                              cGCTTatcgcagattagcacgtccttcatcgcctc      >  1:15036393‑M2/1‑5 (MQ=255)
                              cGCTTatcgcagattagcacgtccttcatcgcctc      >  1:4691862‑M2/1‑5 (MQ=255)
                              cGCTTatcgcagattagcacgtccttcatcgcctc      <  1:16387088‑M2/35‑31 (MQ=255)
                              cGCTTatcgcagattagcacgtccttcatcgcctc      <  1:3875202‑M2/35‑31 (MQ=255)
                              cGCTTatcgcagattagcacgtccttcatcgcctc      <  1:20566492‑M2/35‑31 (MQ=255)
                              cGCTTatcgcagattagcacgtccttcatcgcctc      <  1:2356533‑M2/35‑31 (MQ=255)
                               gCTTatcgcagattagcacgtccttcatcgcctct     <  1:16575252‑M2/35‑32 (MQ=255)
                               gCTTatcgcagattagcacgtccttcatcgcctct     <  1:11393014‑M2/35‑32 (MQ=255)
                               gCTTatcgcagattagcacgtccttcatcgcctct     <  1:8378400‑M2/35‑32 (MQ=255)
                               gCTTatcgcagattagcacgtccttcatcgcctct     <  1:12475156‑M2/35‑32 (MQ=255)
                               gCTTatcgcagattagcacgtccttcatcgcctct     <  1:17236409‑M2/35‑32 (MQ=255)
                               gCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGa     >  1:10145817/1‑35 (MQ=255)
                                cTTatcgcagattagcacgtccttcatcgcctctg    <  1:1752301‑M2/35‑33 (MQ=255)
                                cTTatcgcagattagcacgtccttcatcgcctctg    <  1:10284605‑M2/35‑33 (MQ=255)
                                cTTatcgcagattagcacgtccttcatcgcctctg    <  1:7330737‑M2/35‑33 (MQ=255)
                                cTTatcgcagattagcacgtccttcatcgcctctg    <  1:16261097‑M2/35‑33 (MQ=255)
                                cTTatcgcagattagcacgtccttcatcgcatctg    >  1:4323932‑M2/1‑3 (MQ=255)
                                cTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAg    >  1:13063095/1‑35 (MQ=255)
                                 tttttttACCCCGCTCCTGTAGCAACGCATTGAGc   <  1:8647098/35‑1 (MQ=255)
                                 ttatcgcagattagcacgtccttcatcgcctctga   <  1:9590969‑M2/35‑34 (MQ=255)
                                 ttatcgcagattagcacgtccttcatcgcctctga   <  1:371006‑M2/35‑34 (MQ=255)
                                 ttatcgcagattagcacgtccttcatcgcctctga   <  1:5216944‑M2/35‑34 (MQ=255)
                                 ttatcgcagattagcacgtccttcatcgcctctga   <  1:20296757‑M2/35‑34 (MQ=255)
                                 ttatcgcagattagcacgtccttcatcgcctctga   <  1:1166775‑M2/35‑34 (MQ=255)
                                 ttatcgcagattagcacgtccttcatcgcctctga   <  1:15915171‑M2/35‑34 (MQ=255)
                                  tatcgcagattagcccgtccttcatcgcctctgac  >  1:4996097‑M2/1‑1 (MQ=255)
                                  tatcgcagattagcacgtccttcatcgcctctgac  <  1:12412533‑M2/35‑35 (MQ=255)
                                  tatcgcagattagcacgtccttcatcgcctctgac  <  1:18426779‑M2/35‑35 (MQ=255)
                                  tatcgcagattagcacgtccttcatcgcctctgac  <  1:6563063‑M2/35‑35 (MQ=255)
                                  tatcgcagattagcacgtccttcatcgcctctgac  <  1:6365762‑M2/35‑35 (MQ=255)
                                  tatcgcagattagcacgtccttcatcgcctctgac  <  1:14965618‑M2/35‑35 (MQ=255)
                                  tatcgcagattagcacgtccttcatcgcctctgac  <  1:1552739‑M2/35‑35 (MQ=255)
                                  |                                  
TTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCG  >  REL606/2867441‑2867509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.