New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1822767 =84 (0.820)11 (0.140) 3/38 NT 13.7% coding (1422/1962 nt) topB DNA topoisomerase III
?REL606 = 2900727 72 (0.890)coding (86/771 nt) yqeC hypothetical protein

Only 100 of 175 total aligned reads displayed.

TTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTT  >  REL606/2900693‑2900761
                                  |                                  
ttCTGCCAGCCAAAAAAGCAAGCTGGTTTTccccc                                    <  1:4588363/35‑1 (MQ=255)
ttCTGCCAGCCAAAAAAGCAAGCTGGTTTTccccc                                    <  1:13513240/35‑1 (MQ=255)
 tCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                   <  1:10005673‑M1/35‑1 (MQ=255)
 tCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                   >  1:18728536‑M1/1‑35 (MQ=255)
 tCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                   >  1:2464899‑M1/1‑35 (MQ=255)
 tCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                   >  1:17878627‑M1/1‑35 (MQ=255)
 tCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                   >  1:8864986‑M1/1‑35 (MQ=255)
 tCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                   <  1:13370255‑M1/35‑1 (MQ=255)
  ctcccagccaaaaAAGCAAGCTGGTTTTCCCCCCA                                  <  1:948370‑M1/32‑1 (MQ=255)
  cTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                  <  1:358164‑M1/35‑1 (MQ=255)
  cTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                  <  1:17291301‑M1/35‑1 (MQ=255)
  cTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                  <  1:3899021‑M1/35‑1 (MQ=255)
  cTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                  <  1:14855704‑M1/35‑1 (MQ=255)
  cTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                  <  1:6932931‑M1/35‑1 (MQ=255)
   tGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAG                                 >  1:16761265‑M1/1‑35 (MQ=255)
   tGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAG                                 >  1:17831976‑M1/1‑35 (MQ=255)
   ggccagccaaAAAAGCAAGCTGGTTTTCCCCCCAG                                 <  1:13957744‑M1/34‑1 (MQ=255)
    gccagccaAAAAAGCAAGCTGGTTTTCCCCCCAGC                                <  1:14733318‑M1/35‑1 (MQ=255)
     ccagccaAAAAAGCAAGCTGGTTTTCCCCCcagca                               <  1:854092‑M2/35‑6 (MQ=255)
     ccagccaAAAAAGCAAGCTGGTTTTCCCCCcagca                               >  1:5307588‑M2/1‑30 (MQ=255)
     ccagccaAAAAAGCAAGCTGGTTTTCCCCCcagca                               <  1:20134874‑M2/35‑6 (MQ=255)
     ccagccaAAAAAGCAAGCTGGTTTTCCCCCcagca                               >  1:15488413‑M2/1‑30 (MQ=255)
     ccagccaAAAAAGCAAGCTGGTTTTCCCCCcagca                               <  1:17503518‑M2/35‑6 (MQ=255)
      cagccaAAAAAGCAAGCTGGTTTTCCCCCCAGCAc                              <  1:18547268/35‑1 (MQ=255)
      cagccaAAAAAGCAAGCTGGTTTTCCCCCCAGCAc                              <  1:1071039/35‑1 (MQ=255)
      cagccaAAAAAGCAAGCTGGTTTTCCCCCCAGCAc                              >  1:12666253/1‑35 (MQ=255)
       agccaAAAAAGCAAGCTTGTTTTCCCCCCAGCAcc                             >  1:10394809/1‑35 (MQ=255)
       agccaAAAAAGCAAGCTGGTTTTCCCCCCAGCAcc                             >  1:10322909/1‑35 (MQ=255)
       agccaAAAAAGCAAGCTGGTTTTCCCCCCAGCAcc                             <  1:16658389/35‑1 (MQ=255)
         ccaAAAAAGCAAGCTGGTTTTCCCCCCAGCACcaa                           >  1:4979109/1‑35 (MQ=255)
         ccaAAAAAGCAAGCTGGTTTTCCCCCCAGCACcaa                           >  1:9010993/1‑35 (MQ=255)
           aaaaaaGCAAGCTGGTTTTCCCCCCAGCACcaaca                         <  1:18427788/35‑1 (MQ=255)
           aaaaaaGCAAGCTGGTTTTCCCCCCAGCACcaaca                         >  1:3578188/1‑35 (MQ=255)
            aaaaaGCAAGCTGGTTTTCCCCCCAGAACcaacaa                        <  1:19385378/35‑1 (MQ=255)
             aaaaGCAAGCTGGTTTTCCCCCCAGCACCaacaac                       >  1:15310609/1‑35 (MQ=255)
             aaaaGCAAGCTGGTTTTCCCCCCAGCACCaacaac                       >  1:6603711/1‑35 (MQ=255)
              aaaGCAAGCTGGTTTTCCCCCCAGCACCAacaaca                      <  1:11669445/35‑1 (MQ=255)
              aaaGCAAGCTGGTTTTCCCCCCAGCACCAacaaca                      >  1:17860715/1‑35 (MQ=255)
              aaaGCAAGCTGGTTTTCCCCCCAGCACCAacaaca                      >  1:14619875/1‑35 (MQ=255)
              aaaGCAAGCTGGTTTTCCCCCCAGCACCAacaaca                      <  1:13185611/35‑1 (MQ=255)
               aagcaagcTGGTTTTCCCCCCAGCACCAACAACAg                     >  1:5329194/1‑35 (MQ=255)
               aagcaagcTGGTTTTCCCCCCAGCACCAACAACAg                     <  1:8051691/35‑1 (MQ=255)
               aagcaagcTGGTTTTCCCCCCAGCACCAACAACAg                     >  1:19924041/1‑35 (MQ=255)
                agcaagcTTGTTTTCCCCCCAGCACCAACAACAGa                    >  1:15635739/1‑35 (MQ=255)
                 gcaatcTGGTTTTCCCCCCAGCACCAACAACAGaa                   >  1:6086883/1‑35 (MQ=255)
                  caagcTGGTTTTCCCCCCAGCACCAACAACAGaaa                  >  1:11510195/1‑35 (MQ=255)
                   aagcTTGTTGTCCCCCCAGCACCAACAACAGAAAt                 <  1:20243943/35‑1 (MQ=37)
                   aagcTGGTTTTCCCCCCAGCACCAACAACAGAAAt                 >  1:3816250/1‑35 (MQ=255)
                   aagcTGGTTTTCCCCCCAGCACCAACAACAGAAAt                 >  1:11661802/1‑35 (MQ=255)
                   aagcTGGTTTTCCCCCCAGCACCAACAACAGAAAt                 <  1:10194184/35‑1 (MQ=255)
                   aagcTGGTTTTCACCCCAGCACCAACAACAGAAAt                 <  1:19236128/35‑1 (MQ=255)
                      cTGGTTTTCCCCCCAGCACCAACAACAGAAATcac              <  1:13347958/35‑1 (MQ=255)
                       tGGTTTTCCCCCCAGCACCAACAACAGAAATcaca             >  1:14149668/1‑35 (MQ=255)
                       tGGTTTTCCCCCCAGCACCAACAACAGAAATcaca             >  1:8915447/1‑35 (MQ=255)
                       tGGTTTTCCCCCCAGCACCAACAACAGAAATcaca             >  1:18363479/1‑35 (MQ=255)
                       cccttttcccCCcagcaactcatcgcctttcgcca             >  1:13871513‑M2/4‑12 (MQ=255)
                        ggTTTTCCCCCCAGCACCAACAACAGAAATCACAg            >  1:4166293/1‑35 (MQ=255)
                        ggTTTTCCCCCCAGCACCAACAACAGAAATCACAg            >  1:16701845/1‑35 (MQ=255)
                        ggTTTTCCCCCCAGCACCAACAACAGAAATCACAg            >  1:2872132/1‑35 (MQ=255)
                        ggTTTTCCCCCCAGCACCAACAACAGAAATCACAg            <  1:6728476/35‑1 (MQ=255)
                        ggTTTTCCCCCCAGCACCAACAACAGAAATCACAg            >  1:2367186/1‑35 (MQ=255)
                         gTTTTCCCCCCAGCACCAACAACAGAAATCACAGt           >  1:2242059/1‑35 (MQ=255)
                         gTTTTCCCCCCAGCACCAACAACAGAAATCACAGt           <  1:10095603/35‑1 (MQ=255)
                         cttttcCCCCcagcaactcatcgcctttcgccacc           >  1:19007127‑M2/2‑10 (MQ=255)
                          ttttCCCCCcagcaactcatcgcctttcgccacca          >  1:9265414‑M2/1‑9 (MQ=255)
                          ttttCCCCCCAGCACCAACAACAGAAATCACAGTg          >  1:3263523/1‑35 (MQ=255)
                          ttttCCCCCCAGCACCAACAACAGAAATCACAGTg          <  1:16415960/35‑1 (MQ=255)
                          atttcCCCCCAGCctcaggctgtaatcttaatttc          <  1:2779359‑M1/34‑23 (MQ=255)
                          atttcCCCCCAGCctcaggctgtaatcttaatttc          <  1:1331012‑M1/34‑23 (MQ=255)
                           tttCCCCCCAGCctcaggctgtaatcttaatttca         <  1:17567557‑M1/35‑24 (MQ=255)
                           tttCCCCCCAGCACCAACAACAGAAATCACAGTgg         >  1:7341142/1‑35 (MQ=255)
                           tttCCCCCCAGCACCAACAACAGAAATCACAGTgg         >  1:18680914/1‑35 (MQ=255)
                           tttACCCCCAGCctcaggctgtaatcttaatttca         <  1:3037177‑M1/35‑24 (MQ=255)
                            ttCCCCCCAGCACCAACAACAGAAATCACAGTggg        >  1:12894823/1‑35 (MQ=255)
                            ttCCCCCCAGCACCAACAACAGAAATCACAGTggg        >  1:11042044/1‑35 (MQ=255)
                            ttCCCCCCAGCACCAACAACAGAAATCACAGTggg        >  1:15950842/1‑35 (MQ=255)
                            ttCCCCCCAGCACCAACAACAGAAATCACAGTggg        <  1:19430143/35‑1 (MQ=255)
                             tacccccagCctcaggctgtaatcttaatttcaaa       <  1:7674614‑M1/33‑26 (MQ=255)
                             tCCCCGcagcaactcatcgcctttcgccaccacag       >  1:12001901‑M2/1‑6 (MQ=255)
                              ccccccagcaactcatcgcctttcgacaccacagg      >  1:7024687‑M2/1‑5 (MQ=255)
                              ccccccAGCACCAACAACAGAAATCACAGTGGGAc      <  1:9266412/35‑1 (MQ=255)
                              ccccccAGCACCAACAACAGAAATCACAGTGGGAc      >  1:20561702/1‑35 (MQ=255)
                              acccccaGCctcaggctgtaatcttaatttcaaag      <  1:97567‑M1/34‑27 (MQ=255)
                              acccccaGCctcaggctgtaatcttaatttcaaag      <  1:17509686‑M1/34‑27 (MQ=255)
                               cccccagcaactcatcgcctttcgccaccacaggc     >  1:661719‑M2/1‑4 (MQ=255)
                               cccccAGCctcaggctgtaatcttaatttcaaaga     <  1:8186920‑M1/35‑28 (MQ=255)
                               cccccAGCACCAACAACAGAAATCACAGTGGGACg     >  1:2692893/1‑35 (MQ=255)
                               cccccAGCACCAACAACAGAAATCACAGTGGGACg     <  1:18968972/35‑1 (MQ=255)
                                ccccAGCctcaggctgtaatcttaatttcaaagaa    <  1:7189374‑M1/35‑29 (MQ=255)
                                ccccAGCACCAACAACAGAAATCACAGTGGGACGt    <  1:20300864/35‑1 (MQ=255)
                                acccAGCACCAACAACAGAAATCACAGTGGGACGt    <  1:5902062/34‑1 (MQ=255)
                                 cccagcaactcatcgcctttcgccaccacaggcag   >  1:827183‑M2/1‑2 (MQ=255)
                                 cccAGCACCAACAACAGAAATCACAGTGGGACGtt   <  1:16702159/35‑1 (MQ=255)
                                 cccAGCACCAACAACAGAAATCACAGTGGGACGtt   <  1:2007012/35‑1 (MQ=255)
                                 cccAGCACCAACAACAGAAATCACAGTGGGACGtt   <  1:4275446/35‑1 (MQ=255)
                                 cccAGCACCAACAACAGAAATCACAGTGGGACGtt   <  1:19135900/35‑1 (MQ=255)
                                  ccAGCctcaggctgtaatcttaatttcaaagaaac  <  1:12299406‑M1/35‑31 (MQ=255)
                                  ccAGCctcaggctgtaatcttaatttcaaagaaac  <  1:3149275‑M1/35‑31 (MQ=255)
                                  ccAGCACCAACAACAGAAATCACAGTGGGACGttt  <  1:905057/35‑1 (MQ=255)
                                  ccAGCACCAACAACAGAAAACACAGTTGGACGttt  >  1:1265524/1‑35 (MQ=37)
                                  |                                  
TTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTT  >  REL606/2900693‑2900761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.