New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 133592652 (0.510)11 (0.170) 5/30 NT 18.7% coding (1724/2676 nt) acnA aconitate hydratase
?REL606 = 2863313 63 (0.980)coding (285/531 nt) ygdP dinucleoside polyphosphate hydrolase

Only 100 of 193 total aligned reads displayed.

CGCTCACCAGCTGCAAGAGAAACCATTTTTGTTTTTGGCCGATACAAACCGGCTTCGTGTCCCAACGCA  >  REL606/2863279‑2863347
                                  |                                  
  cTCACCAGCTGCAAGAGAAACCATTTTTGTTTTtg                                  >  1:4203539‑M2/1‑33 (MQ=255)
  cTCACCAGCTGCAAGAGAAACCATTTTTGTTTTtg                                  <  1:13219610‑M2/35‑3 (MQ=255)
   tCACCAGCTGCAAGAGAAACCATTTTTGTTTTtgg                                 <  1:10022406‑M2/35‑4 (MQ=255)
   tCACCAGCTGCAAGAGAAACCATTTTTGTTTTtgg                                 >  1:5405484‑M2/1‑32 (MQ=255)
    cACCAGCTGCAAGAGAAACCATTTTTGTTTTtggc                                <  1:2638767‑M2/35‑5 (MQ=255)
     aCCAGCTGCAAGAGAAACCATTTTTGTTTTtggcc                               >  1:9954162‑M2/1‑30 (MQ=255)
     aCCAGCTGCAAGAGAAACCATTTTTGTTTTtggcc                               <  1:5685002‑M2/35‑6 (MQ=255)
     aCCAGCTGCAAGAGAAACCATTTTTGTTTTtggcc                               >  1:19834585‑M2/1‑30 (MQ=255)
      ccAGCTGCAAGAGAAACCATTTTTGTTTTtggccg                              <  1:15316995‑M2/35‑7 (MQ=255)
      ccAGCTGCAAGAGAAACCATTTTTGTTTTtggccg                              <  1:17788534‑M2/35‑7 (MQ=255)
      ccAGCTGCAAGAGAAACCATTTTTGTTTTtggccg                              <  1:14418622‑M2/35‑7 (MQ=255)
      ccAGCTGCAAGAGAAACCATTTTTGTTTTtggccg                              >  1:20333113‑M2/1‑29 (MQ=255)
      ccAGCTGCAAGAGAAACCATTTTTGTTTTtggccg                              <  1:428840‑M2/35‑7 (MQ=255)
      ccAGCTGCAAGAGAAACCATTTTTGTTTTtggccg                              >  1:5993279‑M2/1‑29 (MQ=255)
        aGCTGCAAGAGAAACCATTTTTGTTTTtggccgat                            <  1:17094407‑M2/35‑9 (MQ=255)
        aGCTGCAAGAGAAACCATTTTTGTTTTtggccgat                            >  1:307728‑M2/1‑27 (MQ=255)
         gCTGCAAGAGAAACCATTTTTGTTTTtggccgata                           <  1:2064640‑M2/35‑10 (MQ=255)
          tctcAAGAGAAACCATTTTTGTTTTTGGCCGATAc                          <  1:3629041/32‑1 (MQ=255)
          cTGCAAGAGAAACCATTTTTGTTTTTGGCCGATAc                          <  1:20515587/35‑1 (MQ=255)
          cTGCAAGAGAAACCATTTTTGTTTTTGGCCGATAc                          <  1:5930147/35‑1 (MQ=255)
          cTGCAAGAGAAACCATTTTTGTTTTTGGCCGATAc                          <  1:19902401/35‑1 (MQ=255)
           tGCAAGAGAAACCATTTTTGTTTTTGTCCGATACa                         >  1:15730035/1‑35 (MQ=255)
           tGCAAGAGAAACCATTTTTGTTTTTGGCCGATACa                         >  1:20253080/1‑35 (MQ=255)
           tGCAAGAGAAACCATTTTTGTTTTTGGCCGATACa                         <  1:12161232/35‑1 (MQ=255)
           tGCAAGAGAAACCATTTTTGTTTTTGGCCGATACa                         <  1:353421/35‑1 (MQ=255)
           tGCAACAGAAACCATTTTTGTTTTTGGCCGATACa                         >  1:18152712/1‑35 (MQ=255)
            gCAAGAGAACCCATTTTTGTTTTTGGCCGATACaa                        <  1:5065194/35‑1 (MQ=255)
            gCAAGAGAAACCATTTTTGTTTTTGGCCGATACaa                        >  1:20307347/1‑35 (MQ=255)
             cAAGAGAAACCATTTTTGTTTTTGGCCGATACaaa                       >  1:20015371/1‑35 (MQ=255)
             cAAGAGAAACCATTTTTGTTTTTGGCCGATACaaa                       >  1:10709312/1‑35 (MQ=255)
             cAAGAGAAACCATTTTTGTTTTTGGCCGATACaaa                       >  1:18798911/1‑35 (MQ=255)
             cAAGAGAAACCATTTTTGTTTTTGGCCGATACaaa                       <  1:2483971/35‑1 (MQ=255)
             cAAGAGAAACCATTTTTGTTTTTGGCCGATACaaa                       <  1:11428056/35‑1 (MQ=255)
             cAAGAGAAACCATTTTTGTTTTTGGCCGATACaaa                       <  1:12631543/35‑1 (MQ=255)
             cAAGAGAAACCATTTTTGTTTTTGGCCGATACaaa                       >  1:11265681/1‑35 (MQ=255)
              aaGAGAAACCATTTTTGTTTTTGGCCGATACAAAc                      >  1:93890/1‑35 (MQ=255)
              aaGAGAAACCATTTTTGTTTTTGGCCGATACAAAc                      >  1:8896469/1‑35 (MQ=255)
              aaGAGAAACCATTTTTGTTTTTGGCCGATACAAAc                      >  1:8249055/1‑35 (MQ=255)
              aaGAGAAACCATTTTTGTTTTTGGCCGATACAAAc                      <  1:12271807/35‑1 (MQ=255)
              aaGAGAAACCATTTTTGTTTTTGGCCGATACAAAc                      >  1:13903542/1‑35 (MQ=255)
               agagAAACCATTTTTGTTTTTTGCCGATACAAAcc                     >  1:5807693/1‑35 (MQ=255)
               agagAAACCATTTTTGTTTTTTGCCGATACAAAcc                     >  1:1293574/1‑35 (MQ=255)
               agagAAACCATTTTTGTTTTTGGCCGATACAAAcc                     <  1:15484931/35‑1 (MQ=255)
               agagAAACCATTTTTGTTTTTGGCCGATACAAAcc                     >  1:15563902/1‑35 (MQ=255)
               agagAAACCATTTTTGTTTTTGGCCGATACAAAcc                     <  1:2290772/35‑1 (MQ=255)
               aaagaAACCATTTTTGTTTTTGGCCGATACAAAcc                     <  1:19044216/33‑1 (MQ=255)
                gagaAACCATTTTTGTTTTTGGCCGATACAAACCg                    >  1:10157005/1‑35 (MQ=255)
                gagaAACCATTTTTGTTTTTGGCCGATACAAACCg                    >  1:16237938/1‑35 (MQ=255)
                 agaAACCATTTTTGTTTTTGGCCGATACAAACCgg                   >  1:16282601/1‑35 (MQ=255)
                 agaAACCATTTTTGTTTTTGGCCGATACAAACCgg                   >  1:3757351/1‑35 (MQ=255)
                 agaAACCATTTTTGTTTTTGGCCGATACAAACCgg                   >  1:7476683/1‑35 (MQ=255)
                  gaAACCATTTTTGTTTTTGGCCGATACAAACCGGc                  <  1:14969252/35‑1 (MQ=255)
                  gaAACCATTTTTGTTTTTGGCCGATACAAACCGGc                  <  1:15874134/35‑1 (MQ=255)
                  gaAACCATTTTTGTTTTTGGCCGATACAAACCGGc                  >  1:19192335/1‑35 (MQ=255)
                   aaaCCATTTTTGTTTTTGGCCGATACAAACCGGCt                 <  1:9757293/35‑1 (MQ=255)
                   aaaCCATTTTTGTTTTTGGCCGATACAAACCGGCt                 >  1:1490595/1‑35 (MQ=255)
                   aaaCCATTTTTGTTTTTGGCCGATACAAACCGGCt                 >  1:1511236/1‑35 (MQ=255)
                   aaaCCATTTTTGTTTTTGGCCGATACAAACCGGCt                 <  1:7963408/35‑1 (MQ=255)
                   aaaCCATTTTTGTTTTTGGCCGATACAAACCGGCt                 >  1:2567587/1‑35 (MQ=255)
                    aaCCATTTTTGTTTTTGGCCGATACAAACCGGCtt                >  1:7993226/1‑35 (MQ=255)
                     aCCATTTTTGTTTTTGGCCGATACAAACCGGCTTc               <  1:5818073/35‑1 (MQ=255)
                     aCCATTTTTGTTTTTGGCCGATACAAACCGGCTTc               <  1:6901358/35‑1 (MQ=255)
                     aCCATTTTTGTTTTTGGCCGATACAAACCGGCTTc               <  1:17290724/35‑1 (MQ=255)
                     aCCATTTTTGTTTTTGGCCGATACAAACCGGCTTc               <  1:1421591/35‑1 (MQ=255)
                      ccATTTTTGTTTATGGCCGATACAAACCGGCTTCg              >  1:6958575/1‑35 (MQ=255)
                       cATTTTTGTTTTTGGCCGATACAAACCGNNTTCnn             >  1:17529284/1‑35 (MQ=255)
                       cATTTTTGTTTTTGGCCGATACAAACCGGCTTCgt             <  1:15398520/35‑1 (MQ=255)
                        aTTTTTGTTTTTGGCCGATACAAACCGGCTTCgtg            <  1:7068644/35‑1 (MQ=255)
                        aTTTTTGTTTTTGGCCGATACAAACCGGCTTCgtg            <  1:11488296/35‑1 (MQ=255)
                         tttttttttttggccgataggctcagaagccaggt           >  1:8112101‑M2/1‑10 (MQ=255)
                         tttttgtttttgGCCGATACAAACCGGCTTCgtgt           >  1:16922084/1‑35 (MQ=255)
                          ttttttttttggccgataggctcagaagccaggtt          >  1:9012896‑M2/1‑9 (MQ=255)
                          ttttttttttggccgataggctcagaagccaggtt          >  1:15289517‑M2/1‑9 (MQ=255)
                           tttttttttggccgataggctcagaagccaggttg         >  1:13455040‑M2/1‑8 (MQ=255)
                           tttttttttggccgataggctcagaagccaggttg         >  1:2809660‑M2/1‑8 (MQ=255)
                           tttgtttttgGCCGATACAAACCGGCTTCGTGTcc         >  1:7372078/1‑35 (MQ=255)
                           tttgtttttgGCCGATACAAACCGGCTTCGTGTcc         >  1:6318405/1‑35 (MQ=255)
                            ttttttttggccgataggctcagaagccaggttga        >  1:4909589‑M2/1‑7 (MQ=255)
                            ttgtttttgGCCGATACAAACCGGCTTCGTGTccc        >  1:13626491/1‑35 (MQ=255)
                            ttgtttttgGCCGATACAAACCGGCTTCGTGTccc        >  1:12304803/1‑35 (MQ=255)
                             tgtttttgGCCGATACAAACCGGCTTNGTGTCCCa       <  1:13415123/35‑1 (MQ=255)
                             tgtttttgGCCGATACAAACCGGCTTCGTGTCCCa       <  1:18459909/35‑1 (MQ=255)
                             tgtttttgGCCGATACAAACCGGCTTCGTGTCCCa       >  1:10923120/1‑35 (MQ=255)
                             tgtttttgGCCGATACAAACCGGCTTCGTGTCCCa       <  1:10855629/35‑1 (MQ=255)
                             tgtttttgGCCGATACAAACCGGCTTCGTGTCCCa       <  1:16491293/35‑1 (MQ=255)
                             cttttttggccgataggctcagaagccaggttgat       >  1:1832644‑M2/3‑6 (MQ=255)
                              gtttttgGCCGATACAAACCGGCTTCGTGTCCCaa      >  1:14032555/1‑35 (MQ=255)
                              gtttttgGCCGATACAAACCGGCTTCGTGTCCCaa      <  1:1615096/35‑1 (MQ=255)
                               tttttggccgataggctcagaagccaggttgatat     >  1:8505782‑M2/1‑4 (MQ=255)
                               tttttgGCCGATACAAACCGGCTTCGTGTCCCAAc     <  1:4608929/35‑1 (MQ=255)
                               tttttgGCCGATACAAACCGGCTTCGTGTCCCAAc     <  1:15335647/35‑1 (MQ=255)
                               ttttcgGCCGATACAAACCGGCTTCGTGTCCCAAc     >  1:19232437/1‑35 (MQ=255)
                                ttttgGCCGATACAAACCGGCTTCGTGTCCCAACg    >  1:12494081/1‑35 (MQ=255)
                                 tttggccgataggctcagaagccaggttgatattc   >  1:18948172‑M2/1‑2 (MQ=255)
                                 tttggccgagaggctcagaagccaggttgatattc   >  1:1198564‑M2/1‑2 (MQ=255)
                                 tttgGCCGATACAAACCGGCTTCGTGTCCCAACGc   >  1:4478517/1‑35 (MQ=255)
                                 tttgGCCGATACAAACCGGCTTCGTGTCCCAACGc   <  1:10376962/35‑1 (MQ=255)
                                 tttgGCCGATACAAACCGGCTTCGTGTCCCAACGc   <  1:2231795/35‑1 (MQ=255)
                                  ttgGCCGATACAAACCGGCTTCGTGTCCCAACGCa  <  1:7840754/35‑1 (MQ=255)
                                  ttgGCCGATACAAACCGGCTTCGTGTCCCAACGCa  <  1:11196361/35‑1 (MQ=255)
                                  |                                  
CGCTCACCAGCTGCAAGAGAAACCATTTTTGTTTTTGGCCGATACAAACCGGCTTCGTGTCCCAACGCA  >  REL606/2863279‑2863347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.