New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 456653 = | 60 (0.580) | 11 (0.140) | 4/36 | NT | 17.7% | coding (1034/1194 nt) | acrA | multidrug efflux system |
? | REL606 | 3845122 = | 57 (0.740) | coding (269/360 nt) | rnpA | ribonuclease P |
Only 100 of 130 total aligned reads displayed.
GCCTGCTTTCAGACCTTCTGTCACCAGCCACTTA‑TCGCCAATAGCCTGGCTTGCAACGATCGGACGGGT > REL606/456619‑456687 | gCCTGCTTTCAGACCTTCTGTCACCAGCCACTTA‑t > 1:14133892/1‑35 (MQ=255) gCCTGCTTTCAGACCTTCTGTCACCAGCCACTTA‑t > 1:5832648/1‑35 (MQ=255) ccTGCTTTCAGACCTTCTGTCACCAGCCACTTA‑Tc > 1:2810027/1‑35 (MQ=255) ccTGCTTTCAGACCTTCTGTCACCAGCCACTTA‑Tc > 1:1893337/1‑35 (MQ=255) ccTGCTTTCAGACCTTCTGTCACCAGCCACTTA‑Tc > 1:17411338/1‑35 (MQ=255) ccTGCTTTCAGACCTTCTGTCACCAGCCACTTA‑Tc > 1:8042331/1‑35 (MQ=255) ccTGCTTTCAGACCTTCTGTCACCAGCCACTTA‑Tc > 1:17036073/1‑35 (MQ=255) agagcacggttatcgaggtcggcaacccctttttt < 1:6654269‑M1/1‑1 (MQ=255) agagcacggttatcgaggtcggcaacccctttttt > 1:7328156‑M1/35‑35 (MQ=255) agagcacggttatcgaggtcggcaacccctttttt > 1:13678828‑M1/35‑35 (MQ=255) gagcacggttatcgaggtcggcaacccctttttTc > 1:13851609‑M1/34‑35 (MQ=255) gagcacggttatcgaggtcggcaacccctttttTc > 1:13444289‑M1/34‑35 (MQ=255) cTGCTTTCAGACCTTCTGTCACCAGCCACTTA‑TCg > 1:16052708/1‑35 (MQ=255) cTGCTTTCAGACCTTCTGTCACCAGCCACTTA‑TCg > 1:18843851/1‑35 (MQ=255) cTGCTTTCAGACCTTCTGTCACCAGCCACTTA‑TCg > 1:18150504/1‑35 (MQ=255) cTGCTTTCAGACCTTCTGTCACCAGCCACTTA‑TCg > 1:14036280/1‑35 (MQ=255) tGCTTTCAGACCTTCTGTCACCAGCCACTTA‑TCGc > 1:8021408/1‑35 (MQ=255) tGCTTTCAGACCTTCTGTCACCAGCCACTTA‑TCGc > 1:10510020/1‑35 (MQ=255) tGCTTTCAGACCTTCTGTCACCAGACACTTA‑TCGc < 1:1998060/35‑1 (MQ=255) agcacggttatcgaggtcggcaacccctttttTCg < 1:12014012‑M1/3‑1 (MQ=255) agcacggttatcgaggtcggcaacccctttttTCg < 1:15440595‑M1/3‑1 (MQ=255) agcacggttatcgaggtcggcaacccctttttTCg > 1:10201307‑M1/33‑35 (MQ=255) agcacggttatcgagggcggcaacccctttttTCg < 1:3385861‑M1/3‑1 (MQ=255) gcacggttatcgagttcggcaacccctttttTCGc > 1:13627546‑M1/32‑35 (MQ=255) gcacggttatcgaggtcggcaacccctttttTCGc > 1:1598080‑M1/32‑35 (MQ=255) gCTTTCAGACCTTCTGTCACCAGCCACTTA‑TCGcc > 1:13028333/1‑35 (MQ=255) cacggttatcgagggcggcaacccctttttTCGcc < 1:7465864‑M1/5‑1 (MQ=255) cTTTCAGTCCTTCTGTCACCAGCCACTTA‑TCGCCa > 1:18995468/1‑35 (MQ=255) cTTTCAGACCTTCTGTCACCAGCCACTTA‑TCGCCa > 1:12948098/1‑35 (MQ=255) tttCAGACCTTCTGTCACCAGCCACTTA‑TCGCCaa > 1:16686829/1‑35 (MQ=255) acggttatcgaggtcggcaacccctttttTCGCCa > 1:6811869‑M1/30‑35 (MQ=255) ttCAGACCTTCTGTCACCAGCCACTTA‑TCGCCCAt > 1:898762/1‑35 (MQ=255) ttCAGACCTTCTGTCACCAGCCACTTA‑TCGCCAAt > 1:18208538/1‑35 (MQ=255) tCAGACCTTCTGTCACCAGCCACTTA‑TCGCCAATa > 1:10198955/1‑35 (MQ=255) cAGACCTTCTGTCACCAGCCACTTA‑TCGCCAATAg > 1:1631750/1‑35 (MQ=255) aGACCTTCTGTCACCAGCCACTTA‑TCGCCAATAGc > 1:8274192/1‑35 (MQ=255) aGACCTTCTGTCACCAGCCACTTA‑TCGCCAATAGc > 1:4506104/1‑35 (MQ=255) aGACCTTCTGTCACCAGCCACTTA‑TCGCCAATAGc > 1:9211248/1‑35 (MQ=255) gACCTTCTGTCACCAGCCACTTA‑TCGCCAATAGcc > 1:5382110/1‑35 (MQ=255) aCCTTCTGTCACCAGCCACTTA‑TCGCCAATAGCCt > 1:15845305/1‑35 (MQ=255) aCCTTCTGTCACCAGCCACTTA‑TCGCCAATAGCCt > 1:6946145/1‑35 (MQ=255) ccTTCTGTCACCAGCCACTTA‑TCGCCAATAGCCTg > 1:16339898/1‑35 (MQ=255) ccTTCTGTCACCAGCCACTTA‑TCGCCAATAGCCTg > 1:5629090/1‑35 (MQ=255) cTTCTGTCACCAGCCACTTA‑TCGCCAATAGCCTgg > 1:11821538/1‑35 (MQ=255) cTTCTGTCACCAGCCACTTA‑TCGCCAATAGCCTgg > 1:20569761/1‑35 (MQ=255) cTTCTGTCACCAGCCACTTA‑TCGCCAATAGCCTgg > 1:14157725/1‑35 (MQ=255) ttCTCTCACCAGCCACTTA‑TCGCCAATAGCCTGGc > 1:17466819/1‑35 (MQ=255) tCTGTCACCAGCCACTTA‑TCGCCAATAGCCTGGCt > 1:4670459/1‑35 (MQ=255) cTGTCACCAGCCACTTA‑TCGCCAATAGCCTGGCtt > 1:16757973/1‑35 (MQ=255) tGTCACCAGCCACTTA‑TCGCCAATATCCTGGCTTg > 1:13682925/1‑35 (MQ=255) tGTCACCAGCCACTTA‑TCGCCAATAGCCTGGCTTg > 1:9175319/1‑35 (MQ=255) tGTCACCAGCCACTTA‑TCGCCAATAGCCTGGCTTg > 1:14586537/1‑35 (MQ=255) tGTCACCAGCCACTTA‑TCGCCAATAGCCTGGCTTg > 1:8197669/1‑35 (MQ=255) tGTCACCAGCCACTTA‑TCGCCAATAGCCTGGCTTg > 1:17597143/1‑35 (MQ=255) tCACCAGCCACTTA‑TCGCCAATAGCCTGGCTTGCa > 1:11728884/1‑35 (MQ=255) tCACCAGCCACTTA‑TCGCCAATAGCCTGGCTTGCa > 1:3477918/1‑35 (MQ=255) aCCAGCCACTTA‑TCGCCAATAGCCTGGCTTGCAAc > 1:8084451/1‑35 (MQ=255) aCCAGCCACTTA‑TCGCCAATAGCCTGGCTTGCAAc > 1:12331982/1‑35 (MQ=255) ccAGCCACTTA‑TCGCCAATAGCCTGGCTTGCAACg > 1:16827969/1‑35 (MQ=255) ccAGCCACTTA‑TCGCCAATAGCCTGGCTTGCAACg > 1:11400790/1‑35 (MQ=255) ccAGCCACTTA‑TCGCCAATAGCCTGGCTTGCAACg > 1:7211354/1‑35 (MQ=255) ccACCCACTTTTTCGCCAATAGCCTGGCTTGCAAc < 1:18409654/35‑1 (MQ=16) cccccctttttTCGCCAATAGCCTGGCTTGCAACg > 1:4000148‑M1/12‑35 (MQ=255) cAGCCACTTA‑TCGCCAATAGCCTGGCTTGGAATGa > 1:3957724/1‑35 (MQ=37) cAGCCACTTA‑TCGCCAATAGCCTGGCTTGCAACGa > 1:15944943/1‑35 (MQ=255) aGCCACTTA‑TCGCCAATAGCCTGGCTTGCAACGAt > 1:11739998/1‑35 (MQ=255) aGCCACTTA‑TCGCCAATAGCCTGGCTTGCAACGAt > 1:3504334/1‑35 (MQ=255) aGCCACTTA‑TCGCCAATAGCCTGGCTTGCAACGAt > 1:17923151/1‑35 (MQ=255) aGCCACTTA‑TCGCCAATAGCCTGGCTTGCAACGAt > 1:733268/1‑35 (MQ=255) gCCACTTA‑TCGCCAATAGCCTGGCTTGCAACGATc > 1:12331023/1‑35 (MQ=255) gCCACTTA‑TCGCCAATAGCCTGGCTTGCAACGATc > 1:4077205/1‑35 (MQ=255) cccctttttTCGCCAATAGCCTGGCTTGCAACGAt > 1:20595424‑M1/10‑35 (MQ=255) cccctttttCCGCCAATAGCCTGGCTTGCAACGAt > 1:1002709‑M1/10‑35 (MQ=255) accctttttTCGCCAATAGCCTGGCTTGAAACGAt > 1:8543281‑M1/10‑35 (MQ=255) ccctttttTCGCCAATAGCCTGGCTTGCAACGATc > 1:9328705‑M1/9‑35 (MQ=255) cccattttTCGCCAATAGCCTGGCTTGCAACGATc > 1:14891799‑M1/9‑35 (MQ=255) ccACTTA‑TCGCCAATAGCCTGGCTTGCAACGATCg > 1:491469/1‑35 (MQ=255) ccACTTA‑TCGCCAATAGCCTGGCTTGCAACGATCg > 1:2556068/1‑35 (MQ=255) ccACTTA‑TCGCCAATAGCCTGGCTTGCAACGACCg > 1:19676391/1‑35 (MQ=255) cctttttTCGCCAATAGCCTGGCTTGCAACGATCg > 1:9632917‑M1/8‑35 (MQ=255) cctttttTCGCCAATAGCCTGGCTTGCAACGATCg > 1:14630597‑M1/8‑35 (MQ=255) cACTTA‑TCGCCAATAGCCTGGCTTGCAACGATCgg > 1:4279437/1‑35 (MQ=255) cACTTA‑TCGCCAATAGCCTGGCTTGCAACGATCgg > 1:11011840/1‑35 (MQ=255) ctttttCCGCCAATAGCCTGGCTTGCAACGATCgg > 1:15457069‑M1/7‑35 (MQ=255) aCTTA‑TCGCCAATAGCCTGGCTTGCAACGATCGGa > 1:7774046/1‑35 (MQ=255) tctttTCGCCAATAGCCTGGCTTGCAACGATCGGa > 1:17390382‑M1/6‑35 (MQ=255) cttttTCCCCAATAGCCTGGCTTGCAACGATCGGa > 1:10555442‑M1/6‑35 (MQ=255) cTTA‑TCGCCAATAGCCTGGCTTGCAACGATCGGAc > 1:1555058/1‑35 (MQ=255) cTTA‑TCGCCAATAGCCTGGCTTGCAACGATCGGAc > 1:5204848/1‑35 (MQ=255) ttttTCGCCAATAGCCTGGCTTGCAACGATCGGAc > 1:573503‑M1/5‑35 (MQ=255) ttttTCCCCAATAGCCTGGCTTGCAACGATCGGAc > 1:1946563‑M1/5‑35 (MQ=255) a‑TCGCCAATAGCCTGGCTTGCAACGATCTGACggg > 1:17676738/1‑35 (MQ=255) a‑TCGCCAATAGCCTGGCTTGCAACGATCGGAAggg > 1:8725688/1‑35 (MQ=255) a‑TCGCCAATAGCCTGGCTTGCAACGATCCGACggg > 1:8124408/1‑35 (MQ=255) tTCCCCAATAGCCTGGCTTGCAACGATCGGACggg > 1:4517363‑M1/2‑35 (MQ=255) TCGCCAATAGCCTGGCTTGCAACGATCGGAcggga < 1:8286418‑M1/35‑2 (MQ=255) TCGCCAATAGCCTGGCTTGCAACGATCGGACGGGt > 1:16009544‑M1/1‑35 (MQ=255) TCGCCAATAGCCTGGCTTGCAACGATCGGACGGGt > 1:11630806‑M1/1‑35 (MQ=255) TCGCCAATAGCCTGGCTTGCAACGATCGGACGGGt < 1:18954949‑M1/35‑1 (MQ=255) TCGCCAATAGCCTGGCTTGCAACGATCGGACGGGt < 1:9495655‑M1/35‑1 (MQ=255) | GCCTGCTTTCAGACCTTCTGTCACCAGCCACTTA‑TCGCCAATAGCCTGGCTTGCAACGATCGGACGGGT > REL606/456619‑456687 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |