New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2288961 = | 52 (0.510) | 12 (0.140) | 4/40 | NT | 19.0% | coding (1909/3753 nt) | yfaL | adhesin |
? | REL606 | = 3625456 | 59 (0.690) | pseudogene (7/738 nt) | yhjQ | b3534; cell division protein (chromosome partitioning ATPase) |
ACGTGATATTGAAATGCGCGCCGACGGTGAAGTGGCAG‑‑‑‑‑‑‑‑‑‑‑ < REL606/2288998‑2288961 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGGGGGCGGGG < REL606/3625456‑3625446 ACGTGCTATTGAAATGCGCGCCGACGGTGAAGTGG > 1:2183744/1‑35 ACGTGATATTTAAATGCGCGCCGACGGTGAAGTGG > 1:12383689/1‑35 ACGTGATATTGAGATGCGCGCCGACGGTGAAGTGG < 1:8416368/35‑1 ACGTGATATTGAAATGCGCGCCGACGGTGAAGTGG > 1:13044034/1‑35 ACGTGATATTGAAATGCGCGCCGACGGTGAAGTGG < 1:17866030/35‑1 CGTGATATTTAAATGCGCGCCGACGGTGAAGTGGC > 1:19547612/1‑35 CGTGATATTGAAATGCGCGCCGACGGTGAAGTGGC > 1:7118976/1‑35 GTGATATTGAAATGCGCGCCGACGGTGAAGTGGCA < 1:7361932/35‑1 GTGATATTGAAATGCGCGCCGACGGTGAAGTGGCA > 1:11154869/1‑35 GTGATATTGAAATGCGCGCCGACGGTGAAGTGGCA < 1:4014918/35‑1 TGATATTGAAATGCGCGCCGACGGTGAAGTTGCAG > 1:6768052/1‑35 TGATATTGAAATGCGCGCCGACGGTGAAGTGGCAG < 1:9486432/35‑1 TGATATTGAAATGCGCGCCGACGGTGAAGTGGCAG > 1:10679106/1‑35 GATATTGAAATGCGCGCCGACGGTGAAGTGGCAGG > 1:4516450/1‑35 ATATTGAAATGCGCGCCGACGGTGAAGTGGCAGGG > 1:15323672/1‑35 TATTGAAATGCGCGCCGACGGTGAAGTGGCAGGGG > 1:10809731/1‑35 TATTGAAATGCGCGCCGACGGTGAAGTGGCAGGGG > 1:6222435/1‑35 ATTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGG > 1:18378869/1‑35 ATTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGG > 1:20425662/1‑35 ATTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGG > 1:3709337/1‑35 TTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGGG > 1:8634771/1‑35 TTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGGG > 1:8417468/1‑35 TTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGGG > 1:13638740/1‑35 TTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGGG > 1:15449872/1‑35 TGAAATGCGCGCCGACGGTGAAGTGGCAGGGGGGG > 1:19346849/1‑35 TGAAATGCGCGCCGACGGTGAAGTGGCAGGGGGGG > 1:10303060/1‑35 GAAATGCGCGCCGACGGTGAAGTGGCAGGGGGGGg > 1:12664443/1‑34 AAATGCGCGCCGACGGTGAAGTGGCAGGGGGGGgg > 1:3463329/1‑33 AAATGCGCGCCGACGGTGAAGTGGCAGGGGGGGgg > 1:12921888/1‑33 AATGCGCGCCGACGGTGAAGTGGCAGGGGGGGCGG > 1:6275178/1‑35 ATGCGCGCCGACGGTGAAGTGGCAGGGGGGGGGGG > 1:3450120/1‑35 ATGCGCGCCGACGGTGAAGTGGCAGGGGGGGGGGG > 1:10836935/1‑35 ATGCGCGCCGACGGTGAAGTGGCAGGGGGGGGGGG > 1:7168522/1‑35 ATGCGCGCCGACGGTGAAGTGGCAGGGGGGGGGGG > 1:19013933/1‑35 TGCGCGCCGACGGTGAAGTGGCAGGGGGGGGGGGG > 1:2731959/1‑35 TGCGCGCCGACGGTGAAGTGGCAGGGGGGGGGGGG > 1:6955700/1‑35 ACGTGATATTGAAATGCGCGCCGACGGTGAAGTGGCAG‑‑‑‑‑‑‑‑‑‑‑ < REL606/2288998‑2288961 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGGGGGCGGGG < REL606/3625456‑3625446 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |