New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2197349 | 85 (0.830) | 22 (0.240) | 7/42 | NT | 18.7% | coding (659/1992 nt) | cirA | ferric iron‑catecholate outer membrane transporter |
? | REL606 | 3882314 = | 133 (1.290) | coding (104/816 nt) | atpB | F0F1 ATP synthase subunit A |
Only 100 of 233 total aligned reads displayed.
CATGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGA > REL606/3882280‑3882341 | tcaatacgcggcgtttctccggtatcggtgggggg > 1:118386‑M2/35‑35 (MQ=255) ggtcaagtacatcgtaacggaaggtggtGTGGCTg > 1:13374338‑M2/29‑35 (MQ=255) ggtcaagtacatcgtaacggaaggtggtGTGGCTg > 1:9312470‑M2/29‑35 (MQ=255) ggtcaagtacatcgtaacggaaggtggtGTGGCTg < 1:19219862‑M2/7‑1 (MQ=255) ggtcaagtacatcgtaacggaaggtggtGTGGCTg < 1:3090526‑M2/7‑1 (MQ=255) ggtcaagtacatcgtaacggaaggtggtGTGGCTg < 1:7123723‑M2/7‑1 (MQ=255) ggtcaagtacatcgtaacggaaggtggtGTGGCTg > 1:6300351‑M2/29‑35 (MQ=255) ggtcaagtacatcgtaacggaaggtggtGTGGCTg > 1:5393445‑M2/29‑35 (MQ=255) ggtcaagtacatcgtaacggaaggtgggGTGGCTg > 1:17107957‑M2/29‑35 (MQ=255) cATGGAGTCAATATTGATTGTCCAGAAGGTGGCTg < 1:10915671/35‑1 (MQ=255) cATGGAGTCAATATTGATTGTCCAGAAGGTGGCTg > 1:18775243/1‑35 (MQ=255) cATGGAGTCAATATTGATTGTCCAGAAGGTGGCTg > 1:17367808/1‑35 (MQ=255) gtcaagtacatcgtaacggaaggtggtGTGGCTgg > 1:4593393‑M2/28‑35 (MQ=255) gtcaagtacatcgtaacggaaggtggtGTGGCTgg > 1:8285691‑M2/28‑35 (MQ=255) gtcaagtacatcgtaacggaaggtggtGTGGCTgg > 1:1472270‑M2/28‑35 (MQ=255) gtcaagtacatcgtaacggaagggggtGTGGCTgg > 1:7623930‑M2/28‑35 (MQ=255) aTGGAGTCAATATTGATTGTCCAGAAGGTGGCTgg < 1:18828957/35‑1 (MQ=255) tcaagtacatcgtaacggaaggtggtGTGGCTggg > 1:18230103‑M2/27‑35 (MQ=255) tcaagtacatcgtaacggaaggtggtGTGGCTggg > 1:10045598‑M2/27‑35 (MQ=255) tGGAGTCAATATTGATTGTCCAGAAGGTGGCTggg < 1:13126627/35‑1 (MQ=255) aatacgcggcgtttctccggtatcggtgggggggg > 1:9582294‑M2/33‑35 (MQ=255) ggAGTCAATATTGATTGTCCAGAAGGTGGCTgggg < 1:9128284/35‑1 (MQ=255) caagtacatcgtaacggaaggtggtGTGGCTgggg > 1:20253491‑M2/26‑35 (MQ=255) atacgcggcgtttctccggtatcggtggggggggg > 1:15071939‑M2/32‑35 (MQ=255) tacgcggcgtttctccggtatcggtggggggtggg > 1:6029570‑M2/31‑35 (MQ=255) tacgcggcgtttctccggtatcggtgggggggggg > 1:18592978‑M2/31‑35 (MQ=255) tacgcggcgtttctccggtatcggtgggggggggg > 1:5863021‑M2/31‑35 (MQ=255) nagtacatcgtaacggaaggtggtGTGGCTggggg > 1:7142801‑M2/25‑35 (MQ=255) gAGTCAATATTGATTGTCCAGAAGGTGGCTggggg < 1:3795579/35‑1 (MQ=255) acgcggcgtttctccggtatcggtggggggtgggg > 1:4975451‑M2/30‑35 (MQ=255) acgcggcgtttctccggtatcggtgggcggggggg > 1:15505449‑M2/30‑35 (MQ=255) aGTCAATATTGATTGTCCAGAAGGTGGCTgggggg > 1:20128186/1‑35 (MQ=255) gTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGt < 1:9368952/35‑1 (MQ=255) cgcggcgtttctccggtatcggtgggggGGGGGGt > 1:16468133‑M2/29‑35 (MQ=255) cgcggcgtttctccggtatcggtgggggGGGGGGt > 1:15205155‑M2/29‑35 (MQ=255) tCAATATTGATTGTCCAGAAGGTGGCTGGGGGGtt < 1:11948554/35‑1 (MQ=255) tCAATATTGATTGTCAAGAAGGTGGCTGGGGGGtt < 1:3052333/35‑1 (MQ=255) cggcgtttctccggtatcggtgggggGGGGGGttt > 1:16810126‑M2/27‑35 (MQ=255) cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt > 1:16192227/1‑35 (MQ=255) cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt < 1:4240004/35‑1 (MQ=255) cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt > 1:3398052/1‑35 (MQ=255) ggcgtttctccggtatcggtgggggGGGGGGtttt > 1:18246582‑M2/26‑35 (MQ=255) ggcgtttctccggtatcggtgggggGGGGGGgttt > 1:5101918‑M2/26‑35 (MQ=255) catcgtaacggaaggtggtGTGGCTGGGGGGtttt > 1:10527128‑M2/20‑35 (MQ=255) aaTATTGATTGTCCAGAAGGTGGCTGGGGGGtttt < 1:20365660/35‑1 (MQ=255) aaTATTGATTGTCCAGAAGGTGGCTGGGGGGgttt > 1:15888794/1‑35 (MQ=255) atcgtaacggaaggtggtGTGGCTGGGGggtttgc > 1:2770516‑M2/19‑33 (MQ=255) atcgtaacggaaggtggtGTGGCTGGGGGgttttt > 1:11621332‑M2/19‑34 (MQ=255) atatTGATTGTCCAGAAGGTGGCTGGGGGGTTTtg > 1:17972687/1‑35 (MQ=255) tcgtaacggaaggtggtGTGGCTGGGgggtttcct > 1:14786191‑M2/18‑32 (MQ=255) tatTGATTGTCCAGAAGGTGGCTGGGGGGTTTtgt > 1:10906528/1‑35 (MQ=255) tatTGATTGTCCAGAAGGTGGCTGGGGGGTTTtgt < 1:19717765/35‑1 (MQ=255) cgtttctccggtatcggtgggggGGGGggtttttt > 1:8144090‑M2/24‑33 (MQ=255) cgtaacggaaggtggtGTGGCTGGGgggttttctc > 1:5078033‑M2/17‑32 (MQ=255) attgattgTCCAGAAGGTGGCTGGGGGGTTTtttg > 1:6384691/1‑35 (MQ=255) attgattgTCCAGAAGGTGGCTGGGGGGTTTtgtg < 1:12124966/35‑1 (MQ=255) ttgattgTCCAGAAGGTGGCTGGGGGGTTTTGTgg > 1:6308633/1‑35 (MQ=255) ttgattgTCCAGAAGGTGGCTGGGGGGTTTTGTgg < 1:10862982/35‑1 (MQ=255) ttgattgTCCAGAAGGTGGCTGGGGGGTTTTGTgg < 1:10665631/35‑1 (MQ=255) gtaacggaaggtggtGTGGCTGGGGGGTTTTCTgg > 1:14750057‑M2/16‑35 (MQ=255) gtaacggaaggtggtGTGGCTGGGGGGTTTTCTgg > 1:12876851‑M2/16‑35 (MQ=255) tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa > 1:1112173/1‑35 (MQ=255) tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa < 1:8860575/35‑1 (MQ=255) tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa > 1:4370567/1‑35 (MQ=255) tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa > 1:3739294/1‑35 (MQ=255) gattgTCTAGAAGGTGGCTGGGGGGTTTTGTGGAt > 1:5196176/1‑35 (MQ=255) gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt > 1:14999282/1‑35 (MQ=255) gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt < 1:19692452/35‑1 (MQ=255) gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt < 1:14103692/35‑1 (MQ=255) gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt > 1:2956472/1‑35 (MQ=255) attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc < 1:1912301/35‑1 (MQ=255) attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc > 1:2848872/1‑35 (MQ=255) agtgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc < 1:17683398/33‑1 (MQ=255) tgTCCAGAAGGTGGCTGGGGGGTTTTTTGGATcca > 1:8362869/1‑35 (MQ=255) tgTCCAGAAGGTGGCTGGGGGGTTTTTTGGATcca > 1:12407181/1‑35 (MQ=255) tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca < 1:19432875/35‑1 (MQ=255) tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca > 1:2686327/1‑35 (MQ=255) tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca < 1:2606678/35‑1 (MQ=255) gTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccac < 1:8655697/35‑1 (MQ=255) gTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccac > 1:11520548/1‑35 (MQ=255) tCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc > 1:17278962/1‑35 (MQ=255) ccAGAAGGTGGCTGGGGGGTTTTGTGGATccacca > 1:15653859/1‑35 (MQ=255) ccAGAAGGTGGCTGGGGGGTTTTGTGGATccacca > 1:13871952/1‑35 (MQ=255) cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg > 1:2211603/1‑35 (MQ=255) cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg > 1:5420983/1‑35 (MQ=255) cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg < 1:19957150/35‑1 (MQ=255) cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg > 1:685038/1‑35 (MQ=255) cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg < 1:17487263/35‑1 (MQ=255) cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg < 1:18331882/35‑1 (MQ=255) aGAAGGTGGCTGGGGGGTTTTGTGGATCCCACAGc > 1:1615090/1‑35 (MQ=255) aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc > 1:11329587/1‑35 (MQ=255) aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc > 1:4032998/1‑35 (MQ=255) aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc < 1:15485056/35‑1 (MQ=255) gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg < 1:2111999/35‑1 (MQ=255) gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg < 1:223505/35‑1 (MQ=255) gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg < 1:7750497/35‑1 (MQ=255) aaGGTGGCTGGGGGGTTTTTTGGATCCACCAGCga > 1:16587389/1‑35 (MQ=255) aaGGTGGCTGGGGGGTTTTGTGGATCCACCAGCga > 1:5498365/1‑35 (MQ=255) aGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgag > 1:8463191/1‑35 (MQ=255) aGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgag > 1:3259754/1‑35 (MQ=255) | CATGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGA > REL606/3882280‑3882341 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |