New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3258154 =65 (0.630)8 (0.110) 5/34 NT 13.0% coding (1151/1338 nt) glmM phosphoglucosamine mutase
?REL606 3281934 = 61 (0.840)coding (122/492 nt) ptsN sugar‑specific enzyme IIA component of PTS

Only 100 of 132 total aligned reads displayed.

GGTCACGGCTTTAACTGACTCATGCTCAAGTGGATCGCCGCTACCTGCGGTGTAACGTACGTTAACCAG  >  REL606/3258120‑3258188
                                  |                                  
tcaaaacccacctgaggcggcaggctaagttgttt                                    >  1:4134817‑M1/35‑35 (MQ=255)
tcaaaaaccacctgaggcggcaggctaagttgttt                                    >  1:7627906‑M1/35‑35 (MQ=255)
ggTCACGGCTTTAACTGACTCATGCTCAAGTGGAt                                    <  1:16507381/35‑1 (MQ=255)
ggTCACGGCTTTAACTGACTCATGCTCAAGTGGAt                                    >  1:10678067/1‑35 (MQ=255)
caaaaaaccacctgaggcggcaggctaagttgttt                                    >  1:1692975‑M1/35‑35 (MQ=255)
 gTCACGGCTTTAACTGACTCATGCTCAAGTGGATc                                   <  1:20353798/35‑1 (MQ=255)
 gTCACGGCTTTAACTGACTCATGCTCAAGTGGATc                                   <  1:11212222/35‑1 (MQ=255)
 gTCACGGCTTTAACTGACTCATGCTCAAGTGGATc                                   <  1:16906198/35‑1 (MQ=255)
 gTCACGGCTTTAACTGACTAATGCTCAAGTGGATc                                   <  1:2646183/35‑1 (MQ=255)
 caaaaaccacctgaggcggcaggctaagttgttTc                                   >  1:1877758‑M1/34‑35 (MQ=255)
 caaaaaccacctgaggcggcaggctaagttgttTc                                   >  1:1863262‑M1/34‑35 (MQ=255)
 caaaaacaacctgaggcggcaggctaagttgttTc                                   >  1:15200463‑M1/34‑35 (MQ=255)
  tCACGGCTTTAACTGACTCATGCTCAAGTGGATcg                                  <  1:18123125/35‑1 (MQ=255)
  tCACGGCTTTAACTGACTCATGCTCAAGTGGATcg                                  <  1:15086523/35‑1 (MQ=255)
  tCACGGCTTTAACTGACTCATGCTCAAGTAGATcg                                  <  1:17275130/35‑1 (MQ=255)
  aaaacccacctgaggcggcaggctaagttgttTcg                                  >  1:1365283‑M1/33‑35 (MQ=255)
  aaaacccacctgaggcggcaggctaagttgttTcg                                  >  1:15472409‑M1/33‑35 (MQ=255)
  aaaacccacctgaggcggcaggctaagttgttTcg                                  >  1:11696057‑M1/33‑35 (MQ=255)
  aaaaaccacctgaggcggcaggctaagttgttTcg                                  >  1:12531262‑M1/33‑35 (MQ=255)
  aaaaaccacctgaggcggcaggctaagttgttTcg                                  >  1:19809534‑M1/33‑35 (MQ=255)
   cACGGCTTTAACTGACTCATGCTCAAGTGGATcgc                                 <  1:16227017/35‑1 (MQ=255)
   cACGGCTTTAACTGACTCATGCTCAAGTGGATcgc                                 >  1:785760/1‑35 (MQ=255)
   aaaaccacctgaggcggcaggctaagttgttttgc                                 <  1:1771979‑M1/4‑4 (MQ=255)
    aacccacctgaggcggcaggctaagttgttTcgcc                                >  1:4151264‑M1/31‑35 (MQ=255)
    aCGGCTTTAACTGACTCATGCTCAAGTGGATcgcc                                >  1:3243800/1‑35 (MQ=255)
    aCGGCTTTAACTGACTCATGCTCAAGTGGATcgcc                                <  1:309140/35‑1 (MQ=255)
    aCGGCTTTAACTGACTCATGCTCAAGTGGATcgcc                                >  1:2894805/1‑35 (MQ=255)
    aCGGCTTTAACTGACTCATGCTCAAGTGGATcgcc                                <  1:2860077/35‑1 (MQ=255)
    aCGGCTTTAACTGACTCATGCTCAAGTGGATcgcc                                <  1:10665359/35‑1 (MQ=255)
    aCGGCTTTAACTGACTCATGCTCAAGTGGATcgcc                                <  1:13142876/35‑1 (MQ=255)
     cGGCTTTACCTGACTCATGCTCAAGTGGATcgccg                               <  1:3739246/35‑1 (MQ=255)
     cGGCTTTAACTGACTCATGCTCAAGTGGATcgccg                               <  1:17658005/35‑1 (MQ=255)
     cGGCTTTAACTGACTCATGCTCAAGTGGATccccg                               >  1:11165111/1‑35 (MQ=255)
     acccacctgaggcggcaggctaagttgttTcgccg                               >  1:5451146‑M1/30‑35 (MQ=255)
     acccacctgaggcggcaggctaagttgttTcgccg                               >  1:15864828‑M1/30‑35 (MQ=255)
     acccacctgaggcggcaggctaagttgttTcgccg                               >  1:18392172‑M1/30‑35 (MQ=255)
     acccacctgaggcggcaggctaagttgttTcgccg                               >  1:3426204‑M1/30‑35 (MQ=255)
     aaccacctgaggcggcaggctaagttgttTcgccg                               >  1:20592735‑M1/30‑35 (MQ=255)
     aaccacctgaggcggcaggctaagttgttTcgccg                               >  1:15974956‑M1/30‑35 (MQ=255)
      ggCTTTAACTGACTCATGCTCAAGTGGATcgccgc                              >  1:8789673/1‑35 (MQ=255)
      ggCTTTAACTGACTCATGCTCAAGTGGATcgccgc                              >  1:3538447/1‑35 (MQ=255)
      ggCTTTAACTGACTCATGCTCAAGTGGATcgccgc                              >  1:13362917/1‑35 (MQ=255)
      ggCTTTAACTGACTCATGCTCAAGTGGATcgccgc                              >  1:8730190/1‑35 (MQ=255)
      ggCTTTAACTGACTCATGCTCAAGTGGATcgccgc                              >  1:19784634/1‑35 (MQ=255)
      ggCTTTAACTGACTCATGCTCAAGTGGATcgcagc                              <  1:11891398/35‑1 (MQ=255)
       gCTTTAACTGACTCATGCTCAAGTGGATCGCCGCt                             >  1:18920931/1‑35 (MQ=255)
       gCTTTAACTGACTCATGCTCAAGTGGATCGCCGCt                             >  1:12380988/1‑35 (MQ=255)
       gCTTTAACTGACTCATGCTCAAGTGGATCGCCGCt                             >  1:4915403/1‑35 (MQ=255)
        cTTTAACTGACTCATGCTCAAGTGGATCGCCGCTa                            >  1:854320/1‑35 (MQ=255)
        cTTTAACTGACTCATGCTCAAGTGGATCGCCGCTa                            >  1:13472389/1‑35 (MQ=255)
         tttAACTGACTCATGCTCAAGTGGATCGCCGCTAc                           >  1:12491473/1‑35 (MQ=255)
         tttAACTGACTCATGCTCAAGTGGATCGCCGCTAc                           >  1:19575393/1‑35 (MQ=255)
         tttAACTGACTCATGCTCAAGTGGATCGCCGCTAc                           >  1:16515763/1‑35 (MQ=255)
           tAACTGACTCATGCTCAAGTGGATCGCCGCTACCt                         >  1:7431994/1‑35 (MQ=255)
           tAACTGACTCATGCTCAAGTGGATCGCCGCTACCt                         >  1:3766163/1‑35 (MQ=255)
             aCTGACTCATGCTCAAGTGGATCGCCGCTACCTGc                       >  1:5642304/1‑35 (MQ=255)
             aCTGACTCATGCTCAAGTGGATCGCCGCTACCTGc                       >  1:15644081/1‑35 (MQ=255)
             aCTGACTCATGCTCAAGTGGATCGCCGCTACCTGc                       >  1:19427801/1‑35 (MQ=255)
             aCTGACTCATGCTCAAGTGGATCGCCGCTACCTGc                       >  1:12074004/1‑35 (MQ=255)
              cTGACTCATGCTCAAGTGGATCGCCGCTACCTGCg                      >  1:2668870/1‑35 (MQ=255)
              cTGACTCATGCTCAAGTGGATCGCCGCTACCTGCg                      >  1:9807870/1‑35 (MQ=255)
              cTGACTCATGCTCAAGTGGATCGCCGCTACCTGCg                      >  1:17726368/1‑35 (MQ=255)
               tGACTCATGCTCAAGTGGATCGCCGCTACCTGCgg                     >  1:291797/1‑35 (MQ=255)
               tGACTCATGCTCAAGTGGATCGCCGCTACCTGCgg                     >  1:7222469/1‑35 (MQ=255)
                gACTCATGCTCAAGTGGATCGCCGCTACCTTCGgt                    >  1:4319927/1‑35 (MQ=255)
                gACTCATGCTCAAGTGGATCGCCGCTACCTGCggg                    >  1:719289/1‑34 (MQ=255)
                gACTCATGCTCAAGTGGATCGCCGCTACCTGCggg                    >  1:7878387/1‑34 (MQ=255)
                 aCTCATGCTCAAGTGGATCGCCGCTACCTGCgggg                   >  1:2277992/1‑33 (MQ=255)
                  cTCATGCTCAAGTGGATCGCCACTACCTGCggggg                  >  1:6776224/1‑32 (MQ=38)
                   tCATGCTCAAGTGGATCGCCGCTACCTGCGgggtg                 >  1:19263872/1‑34 (MQ=255)
                    catgctaagttgttTCGCCGCTACCTGCGGTGTaa                >  1:4871720‑M1/15‑35 (MQ=255)
                    cATGCTCAAGTGGATCGCCGCTACCTGCGgggtga                >  1:11240868/1‑33 (MQ=37)
                     aTGCTCAAGTGGATCGCCGCTACCTGCGgggtgaa               >  1:9695080/1‑32 (MQ=37)
                     aTGCTCAAGTGGATCGCCGCTACCTGCGGGGTAac               >  1:8682449/1‑35 (MQ=255)
                      tGCTCAGTTGGTTCGCCGCTACCTGCGGTGTAacg              <  1:3688709/35‑1 (MQ=18)
                      tGCTCAGTTGGTTCGCCGCTACCTGCGGTGTAacg              <  1:2240091/35‑1 (MQ=18)
                      tGCTCAAGTGGTTCGCCGCTACCTGCGGTGTAacg              <  1:404626/35‑1 (MQ=255)
                       tcTCAAGTGGTTCGCCGCTACCTGCGGTGTAacgt             <  1:4905530/34‑1 (MQ=255)
                       gctaagtggttTCGCCGCTACCTGCGGTGTAacgt             >  1:14330826‑M1/12‑35 (MQ=255)
                       gCTCAGGTGGTTCGCCGCTACCTGCGGTGTAacgt             <  1:2696057/35‑1 (MQ=25)
                        tgcAAGTGATTCGCCGCTACCTGCGGTGTAacgta            <  1:18351733/33‑1 (MQ=25)
                        cTCAGGTGTTTCGCCGCTACCTGCGGTGTAacgta            <  1:6631224/35‑1 (MQ=25)
                         taaaGTGGTTCGCCGCTACCTGCGGTGTAacgtac           <  1:1662892/33‑1 (MQ=25)
                         taaaGGGGTTCGCCGCTACCTGCGGTGTAacgtac           <  1:9644912/33‑1 (MQ=21)
                         tCAAGGGGTTCGCCGCTACCTGCGGTGTAacgtac           <  1:10055795/35‑1 (MQ=25)
                         gcAAGTGTGTCCCCGCTACCTGCGGTGTAacgtac           <  1:18108743/34‑1 (MQ=25)
                         caagttgttTCGCCGCTACCTGCGGTGTAacgtac           >  1:19759372‑M1/10‑35 (MQ=255)
                         acAAGTGTTTCGCCGCTACCTGCGGTGTAacgtac           <  1:10547561/34‑1 (MQ=25)
                          tagtggttTCGCCGCTACCTGCGGTGTAacgtacg          >  1:695931‑M1/9‑35 (MQ=255)
                           atgTGGTTCGCCGCTACCTGCGGTGTAacgtacgt         <  1:12737247/33‑1 (MQ=25)
                           aggtgttTCGCCGCTACCTGCGGTGTAacgtacgt         >  1:18147064‑M1/8‑35 (MQ=255)
                           aggTGGTTCGCCGCTACCTGCGGTGTAacgtacgt         <  1:5779128/33‑1 (MQ=25)
                           aaGTTGATCGCCGCTACCTGCGGGGTAaagtacgg         >  1:19023318/1‑34 (MQ=25)
                           aaGTGGATCGCCGCTACCTGCGGGGTAacgtacgg         >  1:13455383/1‑34 (MQ=255)
                           aaGTGGATCGCCGCTACCTGCGGGGTAaaggacgg         >  1:7081991/1‑34 (MQ=21)
                             gggttTCGCCGCTACCTGCGGTGTAACGTACGTTa       >  1:1432541‑M1/6‑35 (MQ=255)
                                ttTCGCCGCTACCTGCGGTGTAACGTACGTTAAcc    >  1:2900768‑M1/3‑35 (MQ=255)
                                gtTCGCCGCTACCTGCGGTGTAACGTACGTTAAcc    >  1:3488903‑M1/3‑35 (MQ=255)
                                  TCGCCGCTACCTGCGGTGTAACGTACGTtaacgag  >  1:7692711‑M1/1‑32 (MQ=255)
                                  TCGCCGCTACCTGCGGTGTAACGTACGTTAACCAg  >  1:1476353‑M1/1‑35 (MQ=255)
                                  |                                  
GGTCACGGCTTTAACTGACTCATGCTCAAGTGGATCGCCGCTACCTGCGGTGTAACGTACGTTAACCAG  >  REL606/3258120‑3258188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.