New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2908068 =60 (0.580)9 (0.110) 4/38 NT 14.3% coding (999/2871 nt) xdhD fused predicted xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit/Fe‑S binding subunit
?REL606 4123539 = 60 (0.740)coding (903/1080 nt) frwC predicted enzyme IIC component of PTS

Only 100 of 112 total aligned reads displayed.

TTGCTGGTGCGCCAGATACTCTGGAAGACGATAACAGCCATGCAGCCCAGCGCGGCGAGCATATGATCA  >  REL606/2908034‑2908102
                                  |                                  
gccttcaaccaccggcagcacaatcagaccacccc                                    <  1:18931786‑M1/1‑1 (MQ=255)
gccttcaaccaccggcagcacaatcagaccacccc                                    <  1:10688388‑M1/1‑1 (MQ=255)
 tGCTGGTGCTCCAGATACTCTGGAAGACGATAACa                                   >  1:1359027/1‑35 (MQ=255)
 tGCTGGTGCGCCAGATACTCTGGAAGACGATAACa                                   >  1:9548769/1‑35 (MQ=255)
 tGCTGGTGCGCCAGATACTCTGGAAGACGATAACa                                   >  1:9738892/1‑35 (MQ=255)
 tGCTGGTGCGCCAGATACTCTGGAAGACGATAACa                                   <  1:16216038/35‑1 (MQ=255)
 tGCGGGTGCGCCAGATACTCTGGAAGACGATAACa                                   <  1:3176232/35‑1 (MQ=255)
 ccttcaaccaccggcagcacaatcagaccaccccc                                   <  1:5570951‑M1/2‑2 (MQ=255)
 ccttcaaccaccggcagcacaatcagaccacccCa                                   <  1:15681008‑M1/2‑1 (MQ=255)
  gCTGGTGCGCCAGATACTCTGGAAGACGATAACAg                                  <  1:3469853/35‑1 (MQ=255)
   cTGGTGCGCCAGATACTCTGGAAGACGATAACAGc                                 >  1:16415431/1‑35 (MQ=255)
   cTGGTGCGCCAGATACTCTGGAAGACGATAACAGc                                 >  1:1969430/1‑35 (MQ=255)
   cTGGTGCGCCAGATACTCTGGAAGACGATAACAGc                                 >  1:2911883/1‑35 (MQ=255)
    tcaaccaccggcagcacaatcagaccacccCAGcc                                <  1:15945418‑M1/5‑1 (MQ=255)
    tcaaccaccggcagcacaatcagaccacccCAGcc                                <  1:12598617‑M1/5‑1 (MQ=255)
    tGGTGCGCCAGATAGTCTGGAAGACGATAAAAGcc                                >  1:8640989/1‑35 (MQ=37)
     ggTGCGCCAGATACTCTGGAAGACGATAACAGCCa                               >  1:16638845/1‑35 (MQ=255)
     ggTGCGCCAGATACTCTGGAAGACGATAACAGCCa                               >  1:5473063/1‑35 (MQ=255)
     caaccaccggcaggacaatcagaccacccCAgccc                               <  1:2240971‑M1/6‑2 (MQ=255)
      gTGCGCCAGATACTCTGGAAGACGATAACAGCCAt                              >  1:4462326/1‑35 (MQ=255)
      gTGCGCCAGATACTCTGGAAGACGATAACAGCCAt                              >  1:3003866/1‑35 (MQ=255)
      gTGCGCCAGATACTCTGGAAGACGATAACAGCCAt                              >  1:1191486/1‑35 (MQ=255)
        gcgcCAGATACTCTGGAAGACGATAACAGCCATGc                            >  1:4445523/1‑35 (MQ=255)
          gcCAGATACTCTGGAAGACGATAACAGCCATGCAg                          >  1:5758083/1‑35 (MQ=255)
          gcCAGATACTCTGGAAGACGATAACAGCCATGCAg                          >  1:5754999/1‑35 (MQ=255)
          gcCAGATACTCTGGAAGACGATAACAGCCATGCAg                          >  1:1069744/1‑35 (MQ=255)
          gcCAGATACTCTGGAAGACGATAACAGCCATGCAg                          >  1:16320912/1‑35 (MQ=255)
          gcCAGATACTCTGGAAGACGATAACAGCCATGCAg                          >  1:3590885/1‑35 (MQ=255)
           ccAGATACTCTGGAAGACGATAACAGCCATGCAGc                         >  1:14706764/1‑35 (MQ=255)
           ccAGATACTCTGGAAGACGATAACAGCCATGCAGc                         >  1:19946573/1‑35 (MQ=255)
            cAGATACTCTGGAAGACGATAACAGCCATGCAGcc                        >  1:18305789/1‑35 (MQ=255)
            cAGATACTCTGGAAGACGATAACAGCCATGCAGcc                        >  1:16810235/1‑35 (MQ=255)
            cAGATACTCTGGAAGACGATAACAGCCATGCAGcc                        >  1:1670217/1‑35 (MQ=255)
             aGATACTCTTGAAGACGATAACAGCCATGCAGccc                       >  1:17529798/1‑35 (MQ=255)
             aGATACTCTGGAAGACGATAACAGCCATGCAGccc                       >  1:3643421/1‑35 (MQ=255)
             aGATACTCTGGAAGACGATAACAGCCATGCAGccc                       >  1:5519078/1‑35 (MQ=255)
              gATACTCTGGAAGACGATAACAGCCATGCAGCCCa                      >  1:9236436/1‑35 (MQ=255)
               aTACTCTGGAAGACGATAACAGCCATGCAGCCCAg                     >  1:7438494/1‑35 (MQ=255)
               aTACTCTGGAAGACGATAACAGCCATGCAGCCCAg                     >  1:6656175/1‑35 (MQ=255)
                tACTCTGGAAGACGATAACAGCCATGCAGCCCAgc                    >  1:16906120/1‑35 (MQ=255)
                tACTCTGGAAGACGATAACAGCCATGCAGCCCAgc                    >  1:10102330/1‑35 (MQ=255)
                 aCTCTGGAAGACGATAACAGCCATGCAGCCCAgcg                   >  1:4716511/1‑35 (MQ=255)
                 aCTCTGGAAGACGATAACAGCCATGCAGCCCAgcg                   >  1:9919973/1‑35 (MQ=255)
                 aCTCTGGAAGACGATAACAGCCATGCAGCCCAgcg                   >  1:18608947/1‑35 (MQ=255)
                 aCTCTGGAAGACGATAACAGCCATGCAGCCCAgcg                   >  1:12789511/1‑35 (MQ=255)
                  ctctGGAAGACGATAACAGCCATGCAGCCCAgcgc                  >  1:15332130/1‑35 (MQ=255)
                  ctctGGAAGACGATAACAGCCATGCAGCCCAgcgc                  >  1:7774998/1‑35 (MQ=255)
                  ctctGAAAGACGATAAAAGCCATGCAGCCCAgcgc                  <  1:2390421/35‑1 (MQ=25)
                   tctGGAAGACGATAACAGCCATGCAGCCCAGcgcg                 >  1:9181894/1‑35 (MQ=255)
                   tctGGAAGACGATAACAGCCATGCAGCCCAGcgcg                 >  1:8126875/1‑35 (MQ=255)
                    ctGGAAGACGATAACAGCCATGCAGCCCAGCgcgg                >  1:10827096/1‑35 (MQ=255)
                    ctGGAAGACGATAACAGCCATGCAGCCCAGCgcgg                >  1:14975173/1‑35 (MQ=255)
                    ctGGAAGACGATAACAGCCATGCAGCCCAGCgcgg                >  1:7003109/1‑35 (MQ=255)
                    ctGGAAGACGATAACAGCCATGCAGCCCAGCgcgg                >  1:19290709/1‑35 (MQ=255)
                     tGGAAGACGATAACAGCCATGCAGCCCAGCgtggc               >  1:345407/1‑35 (MQ=255)
                     tGGAAGACGATAACAGCCATGCAGCCCAGCgcggc               >  1:6126695/1‑35 (MQ=255)
                     tGGAAGACGATAACAGCCATGCAGCCCAGCgcggc               >  1:7800129/1‑35 (MQ=255)
                     tGGAAGACGATAACAGCCATGCAGCCCAGCgcggc               >  1:6577716/1‑35 (MQ=255)
                      ggAAGACGATAACAGCCATGCAGCCCAGCgcggcg              >  1:19794673/1‑35 (MQ=255)
                       gAAGACGATAACAGCCATGCAGCCCAGCGCGGCGa             >  1:2934702/1‑35 (MQ=255)
                       gAAGACGATAACAGCCATGCAGCCCAGCGCGGCGa             >  1:15822275/1‑35 (MQ=255)
                        aaGACGATAACAGCCATGCAGCCCAGCGCGGCGAg            >  1:2705107/1‑35 (MQ=255)
                        aaGACGATAACAGCCATGCAGCCCAGCGCGGCGAg            >  1:5345856/1‑35 (MQ=255)
                         agaccacccCAGCCATGCAGCCCAGCGCGGCGAGc           >  1:6946370‑M1/10‑35 (MQ=255)
                         agaccacccCAGCCATGCAGCCCAGCGCGGCGAGc           >  1:14490603‑M1/10‑35 (MQ=255)
                         aGACGATAACAGCCATGCAGCCCAGCGCGGCGAGc           >  1:6547579/1‑35 (MQ=255)
                          gcccacccCAGCCATGCAGCCCAGCGCGGCGAGCa          >  1:20451376‑M1/9‑35 (MQ=255)
                          gaccacccCAGCCATGCAGCCCAGCGCGGCGAGCa          >  1:1812695‑M1/9‑35 (MQ=255)
                          acccacccCAGCCATGCAGCCCAGCGCGGCGAGCa          >  1:5216672‑M1/9‑35 (MQ=255)
                           accacccCAGCCATGCAGCCCAGCGCGGCGAGCat         >  1:6489377‑M1/8‑35 (MQ=255)
                           aCGATAACAGCCATGCAGCCCAGCGCGGCGAGCat         >  1:9922491/1‑35 (MQ=255)
                           aCGATAACAGCCATGCAGCCCAGCGCGGCGAGCat         >  1:11002825/1‑35 (MQ=255)
                           aCGATAACAGCCATGCAGCCCAGCGCGGCGAGCat         >  1:12502027/1‑35 (MQ=255)
                           aCGATAACAGCAATGCAGCCCAGCGCGGAGAGCat         <  1:9744614/35‑1 (MQ=37)
                            ccccccCAGCCATGCAGCCCAGCGCGGCGAGCata        >  1:6422195‑M1/7‑35 (MQ=255)
                            ccccccCAGCCATGCAGCCCAGCGCGGCGAGCata        >  1:19978475‑M1/7‑35 (MQ=255)
                            cGATAACAGCCATGCAGCCCAGCGCGGCGAGCata        >  1:10392218/1‑35 (MQ=255)
                            cGATAACAGCCATGCAGCCCAGCGCGGCGAGCata        >  1:12515903/1‑35 (MQ=255)
                            cGATAACAGCCATGCAGCCCAGCGCGGCGAGCata        >  1:6585451/1‑35 (MQ=255)
                             gATAACAGCCATGCAGCCCAGCGCGGCGAGCatat       >  1:10005747/1‑35 (MQ=255)
                             gATAACAGCCATGCAGCCCAGCGCGGCGAGCatat       >  1:3016165/1‑35 (MQ=255)
                             gATAACAGCCATGCAGCCCAGCGCGGCGAGCatat       >  1:8596942/1‑35 (MQ=255)
                             gATAACAGCCATGCAGCCCAGCGCGGCGAGCatat       >  1:8450961/1‑35 (MQ=255)
                             cccccCAGCCATGCAGCCCAGCGCGGCGAGCatat       >  1:2542602‑M1/6‑35 (MQ=255)
                             aacccCAGCCATGCAGCCCAGCGCGGCGAGCatat       >  1:1289339‑M1/6‑35 (MQ=255)
                              ccccCAGCCATGCAGCCCAGCGCGGCGAGCATATg      >  1:302204‑M1/5‑35 (MQ=255)
                              ccccCAGCCATGCAGCCCAGCGCGGCGAGCATATg      >  1:4947699‑M1/5‑35 (MQ=255)
                              ccccCAGCCATGCAGCACAGCGCGGCGAGCATATg      >  1:9048373‑M1/5‑35 (MQ=255)
                              aTAACAGCCATGCAGCCCAGCGCGGCGAGCATATg      >  1:14029212/1‑35 (MQ=255)
                              aTAACAGCCATGCAGCCCAGCGCGGCGAGCATATg      >  1:6210992/1‑35 (MQ=255)
                               tAACAGCCATGCAGCCCAGCGCGGCGAGCATATGa     >  1:20354259/1‑35 (MQ=255)
                               cccCAGCCATGCAGCCCAGCGCGGCGAGCATATGa     >  1:15038378‑M1/4‑35 (MQ=255)
                               cccCAGCCATGCAGCCCAGCGCGGCGAGCATATGa     >  1:19002858‑M1/4‑35 (MQ=255)
                                ccCAGCCATGCAGCCCAGCGCGGCGAGAATATGat    >  1:17598773‑M1/3‑35 (MQ=255)
                                atCAGCCATGCAGCCCAGCGCGGCGAGCATATGat    <  1:20152975‑M1/33‑1 (MQ=255)
                                aaCAGCCATGCAGCCCAGCGCGGCGAGCATATGat    >  1:4298756/1‑35 (MQ=255)
                                 tCAGCCATGCAGCCCAGCGCGGCGAGCATATGatc   >  1:12498851‑M1/2‑35 (MQ=255)
                                 cCAGCCATGCAGCCCAGCGCGGCGAGCATATGatc   >  1:15615705‑M1/2‑35 (MQ=255)
                                  CAGCCATGCAGCCCAGCGCGGCGAGCATATGatca  >  1:13136438‑M1/1‑35 (MQ=255)
                                  CAGCCATGCAGCCCAGCGCGGCGAGCATATGatca  >  1:12263865‑M1/1‑35 (MQ=255)
                                  |                                  
TTGCTGGTGCGCCAGATACTCTGGAAGACGATAACAGCCATGCAGCCCAGCGCGGCGAGCATATGATCA  >  REL606/2908034‑2908102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.