Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 3,481,820 A→G 100% T46A (ACC→GCC)  malT → transcriptional regulator MalT

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,481,8200A→G100.0% 418.1 120T46A (ACC→GCC) malTtranscriptional regulator MalT
Reads supporting (aligned to +/- strand):  new base (53/67):  ref base (0/0):  total (53/67)

Only 100 of 142 total aligned reads displayed.

CGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCAGTGGGCGGCAGGCAA  >  REL606/3481788‑3481851
                                |                               
cgcTGATCACGAGTCCTGCGGGCTACGGAAAGgcc                               >  1:11777972/1‑35 (MQ=255)
cgcTGATCACGAGTCCTGCGGGCTACGGAAAGgcc                               >  1:7746434/1‑35 (MQ=255)
cgcTGATCACGAGTCCTGCGGGCTACGGAAAGgcc                               >  1:16025985/1‑35 (MQ=255)
cgcTGATCACGAGTCCTGCGGGCTACGGAAAGgcc                               <  1:5312595/35‑1 (MQ=255)
 gcTGATCACGAGTCCTGCGGGCTACGGAAAGgcca                              >  1:17520257/1‑35 (MQ=255)
 gcTGATCACGAGTCCTGCGGGCTACGGAAAGgcca                              <  1:16552558/35‑1 (MQ=255)
 gcTGATCACGAGTCCTGCGGGCTACGGAAAGgcca                              >  1:7694414/1‑35 (MQ=255)
 gcTGATCACGAGTCCTGCGGGCTACGGAAAGgcca                              <  1:8922721/35‑1 (MQ=255)
 gcTGATCACGAGTCCTGCGGGCTACGGAAAGgcca                              <  1:8905118/35‑1 (MQ=255)
  cTGATCACGAGTCCTGCGGGCTACGGAAAGgccac                             <  1:17027782/35‑1 (MQ=255)
   tGATCACGAGTCCTGCGGGCTACGGAAAGgccacc                            >  1:2812363/1‑35 (MQ=255)
   tGATCACGAGTCCTGCGGGCTACGGAAAGgccacc                            <  1:10913948/35‑1 (MQ=255)
    gATCACGAGTCCTGCGGGCTACGGAAAGGCCAccc                           >  1:184491/1‑35 (MQ=255)
     aTCACGAGTCCTGCTGGCTACGGAAAGGCCACCCt                          >  1:10439783/1‑35 (MQ=38)
     aTCACGAGTCCTGCGGGCTACGGAAAGGCCACCCt                          <  1:14304394/35‑1 (MQ=255)
     aTCACGAGTCCTGCGGGCTACGGAAAGGCCACCCt                          <  1:8028997/35‑1 (MQ=255)
     aTCACGAGTCCTGCGGGCTACGGAAAGGCCACCCt                          <  1:3870053/35‑1 (MQ=255)
     aTCACGAGTCCTGCGGGCTACGGAAAGGCCACCCt                          <  1:2214297/35‑1 (MQ=255)
      taaCGAGTCCTGCGGGCTACGGAAAGGCCACCCTc                         <  1:13456077/33‑1 (MQ=255)
      tCACGAGTCCTGCGGGCTACGGAAAGGCCACCCTc                         >  1:1574684/1‑35 (MQ=255)
      tCACGAGTCCTGCGGGCTACGGAAAGGCCACCCTc                         >  1:4291350/1‑35 (MQ=255)
      tCACGAGTCCTGCGGGCTACGGAAAGGCCACCCTc                         <  1:10394356/35‑1 (MQ=255)
      tCACGAGTCCTGCGGGCTACGGAAAGGCCACCCTc                         >  1:9089946/1‑35 (MQ=255)
       cACGAGTCCTGCGGGCTACGGAAAGGCCACCCTCa                        <  1:1102310/35‑1 (MQ=255)
       cACGAGTCCTGCGGGCTACGGAAAGGCCACCCTCa                        >  1:17924474/1‑35 (MQ=255)
       cACGAGTCCTGCGGGCTACGGAAAGGCCACCCTCa                        <  1:13116755/35‑1 (MQ=255)
       cACGAGTCCTGCGGGCTACGGAAAGGCCACCCTCa                        >  1:2980451/1‑35 (MQ=255)
       cACGAGTCCTGCGGGCTACGGAAAGGCCACCCTCa                        >  1:17059033/1‑35 (MQ=255)
       cACGAGTCCTGCGGGCTACGGAAAGGCCACCCTCa                        >  1:370913/1‑35 (MQ=255)
        aCGAGTCCTGCGGGCTACGGAAAGGCCACCCTCAt                       <  1:19002044/35‑1 (MQ=255)
        aCGAGTCCTGCGGGCTACGGAAAGGCCACCCTCAt                       >  1:6879673/1‑35 (MQ=255)
        aCGAGTCCTGCGGGCTACGGAAAGGCCACCCTCAt                       <  1:11577407/35‑1 (MQ=255)
        aCGAGTCCTGCGGGCTACGGAAAGGCCACCATCAt                       <  1:1244293/35‑1 (MQ=38)
         cGAGTCCTGCGGGCTACGGAAAGGCCACCCTCAtt                      <  1:3114963/35‑1 (MQ=255)
         cGAGTCCTGCGGGCTACGGAAAGGCCACCCTCAtt                      >  1:15863172/1‑35 (MQ=255)
         cGAGTCCTGCGGGCTACGGAAAGGCCACCCTCAtt                      >  1:15776771/1‑35 (MQ=255)
         cGAGTCCTGCGGGCTACGGAAAGGCCACCCTCAtt                      >  1:14058968/1‑35 (MQ=255)
         cGAGTCCTGCGGGCTACGGAAAGGCCACCCTCAtt                      >  1:1011544/1‑35 (MQ=255)
          gAGTCCTGCGGGCTACGGAAAGGCCACCCTCAttt                     >  1:20268468/1‑35 (MQ=255)
          gAGTCCTGCGGGCTACGGAAAGGCCACCCTCAttt                     <  1:3636432/35‑1 (MQ=255)
          gAGTCCTGCGGGCTACGGAAAGGCCACCCTCAttt                     >  1:3080163/1‑35 (MQ=255)
           aGTCCTGCGGGCTACGGAAAGGCCACCCTCATTTc                    <  1:4592586/35‑1 (MQ=255)
           aGTCCTGCGGGCTACGGAAAGGCCACCCTCATTTc                    <  1:11489475/35‑1 (MQ=255)
           aGTCCTGCGGGCTACGGAAAGGCCACCCTCATTTc                    <  1:863787/35‑1 (MQ=255)
           aGTCCTGCGGGCTACGGAAAGGCCACCCTCATTTc                    <  1:18898671/35‑1 (MQ=255)
            gTCCTGCGGGCTACGGAAAGGCCACCCTCATTTcc                   >  1:15971514/1‑35 (MQ=255)
            gTCCTGCGGGCTACGGAAAGGCCACCCTCATTTcc                   <  1:1990197/35‑1 (MQ=255)
            gTCCTGCGGGCTACGGAAAGGCCACCCTCATTTcc                   >  1:5792722/1‑35 (MQ=255)
            gTCCTGCGGGCTACGGAAAGGCCACCCTCATTTcc                   >  1:19839690/1‑35 (MQ=255)
             tCCTGCGGGCTACGTAAAGGCCACCCTCATTTccc                  >  1:16975348/1‑35 (MQ=38)
             tCCTGCGGGCTACGGAAAGGCCACCCTCATTTccc                  >  1:14290652/1‑35 (MQ=255)
              ccTGCGGGCTACGGAAAGGCCACCCTCATTTCCCa                 <  1:9631030/35‑1 (MQ=255)
              ccTGCGGGCTACGGAAAGGCCACCCTCATTTCCCa                 >  1:8739192/1‑35 (MQ=255)
              ccTGCGGGCTACGGAAAGGCCACCCTCATTTCCCa                 <  1:12360183/35‑1 (MQ=255)
              ccTGCGGGCTACGGAAAGGCCACCCTCATTTCCCa                 <  1:16165356/35‑1 (MQ=255)
               cTGCGGGCTACGGAAAGGCCACCCTCATTTCCCAg                <  1:6489680/35‑1 (MQ=255)
               cTGCGGGCTACGGAAAGGCCACCCTCATTTCCCAg                >  1:14872612/1‑35 (MQ=255)
               cTGCGGGCTACGGAAAGGCCACCCTCATTTCCCAg                <  1:16290749/35‑1 (MQ=255)
               cTGCGGGCTACGGAAAGGCCACCCTCATTTCCCAg                >  1:3917358/1‑35 (MQ=255)
                tGCGGGCTACGGAAAGGCCACCCTCATTTCCCAGt               <  1:3575538/35‑1 (MQ=255)
                 gCGGGCTACGGAAAGGCCACCCTCATTTCCCAGTg              <  1:7109720/35‑1 (MQ=255)
                  cGGGCTACGGAAAGGCCACCCTCATTTCCCAGTgt             >  1:2518802/1‑34 (MQ=255)
                  cGGGCTACGGAAAGGCCACCCTCATTTCCCAGTgg             >  1:12670265/1‑35 (MQ=255)
                  cGGGCTACGGAAAGGCCACCCTCATTTCCCAGTgg             <  1:5567495/35‑1 (MQ=255)
                   gggCTACGGAAAGGCCACCCTCATTTCCCAGTggg            >  1:423375/1‑35 (MQ=255)
                   gggCTACGGAAAGGCCACCCTCATTTCCCAGTggg            <  1:14733536/35‑1 (MQ=255)
                    ggCTACGGAAAGGCCACCCTCATTTCCCAGTGggc           <  1:9082346/35‑1 (MQ=255)
                    ggCTACGGAAAGGCCACCCTCATTTCCCAGTGggc           <  1:1271705/35‑1 (MQ=255)
                    ggCTACGGAAAGGCCACCCTCATTTCCCAGTGggc           >  1:3785804/1‑35 (MQ=255)
                    ggCTACGGAAAGGCCACCCTCATTTCCCAGTGggc           <  1:13006129/35‑1 (MQ=255)
                    ggCTACGGAAAGGCCACCCTCATTTCCCAGTGggc           >  1:6294730/1‑35 (MQ=255)
                    ggCTACGGAAAGGCCACCCTCATTTCCCAGTGggc           <  1:7240674/35‑1 (MQ=255)
                     gCTACGGAAAGGCCACCCTCATTTCCCAGTGggcg          >  1:4487906/1‑35 (MQ=255)
                     gCTACGGAAAGGCCACCCTCATTTCCCAGTGggcg          <  1:4963362/35‑1 (MQ=255)
                     gCTACGGAAAGGCCACCCTCATTTCCCAGTGggcg          <  1:16596409/35‑1 (MQ=255)
                      cTACGGAAAGGCCACCCTCATTTCCCAGTGggcgg         <  1:4797671/35‑1 (MQ=255)
                      cTACGGAAAGGCCACCCTCATTTCCCAGTGggcgg         <  1:1365278/35‑1 (MQ=255)
                      cTACGGAAAGGCCACCCTCATTTCCAGTGggcggc        >  1:68030/1‑35 (MQ=25)
                       tACGGAAAGGCCACCCTCATTTCCCATTGggcggc        >  1:3722946/1‑35 (MQ=255)
                       tACGGAAAGGCCACCCTCATTTCCCAGTGggcggc        >  1:5303749/1‑35 (MQ=255)
                       tACGGAAAGGCCACCCTCATTTCCAAGTGggcggc        <  1:9147898/35‑1 (MQ=255)
                        aCGGAAAGGCCACCCTCATTTCCCAGTGGGCggca       >  1:17274958/1‑35 (MQ=255)
                        aCGGAAAGGCCACCCTCATTTCCCAGTGGGCggca       >  1:16971911/1‑35 (MQ=255)
                        aCGGAAAGGCCACCCTCATTTCCCAGTGGGCggca       <  1:16302415/35‑1 (MQ=255)
                         cGGAAAGGCCACCCTCATTTCCCAGTGGGCggcag      <  1:9606639/35‑1 (MQ=255)
                         cGGAAAGGCCACCCTCATTTCCCAGTGGGCggcag      >  1:4297029/1‑35 (MQ=255)
                          ggAAAGGCCACCCTCATTTCCCAGTGGGCggcagg     <  1:17068385/35‑1 (MQ=255)
                          ggAAAGGCCACCCTCATTTCCCAGTGGGCggcagg     <  1:14938330/35‑1 (MQ=255)
                          ggAAAGGCCACCCTCATTTCCCAGTGGGCggcagg     <  1:20209543/35‑1 (MQ=255)
                           gAAAGGCCACCCTCATTTCCCAGTGGGCggcaggc    <  1:5787635/35‑1 (MQ=255)
                           gAAAGGCCACCCTCATTTCCCAGTGGGCggcaggc    <  1:12914598/35‑1 (MQ=255)
                           gAAAGGCCACCCTCATTTCCCAGTGGGCggcaggc    <  1:11814481/35‑1 (MQ=255)
                            aaaGGCCACCCTCATTTCCCAGTGGGCggcaggca   <  1:1121228/35‑1 (MQ=255)
                            aaaGGCCACCCTCATTTCCCAGTGGGCggcaggca   <  1:411203/35‑1 (MQ=255)
                            aaaGGCCACCCTCATTTCCCAGTGGGCggcaggca   <  1:8822260/35‑1 (MQ=255)
                            aaaGGCCACCCTCATTTCCCAGTGGGCggcaggca   <  1:7754407/35‑1 (MQ=255)
                            aaaGGCCACCCTCATTTCCCAGTAGGCggcaggca   <  1:426548/35‑1 (MQ=38)
                             aaGGCCACCCTCATTTCCCAGTGGGCGGCAGGCaa  >  1:14720234/1‑35 (MQ=255)
                             aaGGCCACCCTCATTTCCCAGTGGGCGGCAGGCaa  <  1:6054261/35‑1 (MQ=255)
                             aaGGCCACCCTCATTTCCCAGTGGGAGGCAGGCaa  >  1:17654868/1‑35 (MQ=38)
                                |                               
CGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCAGTGGGCGGCAGGCAA  >  REL606/3481788‑3481851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.