New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 923960 =74 (0.720)7 (0.090) 3/36 NT 8.9% coding (1030/1431 nt) ybjT conserved protein with NAD(P)‑binding Rossmann‑fold domain
?REL606 3472589 = 88 (1.140)coding (758/879 nt) yhgA predicted transposase

Only 100 of 188 total aligned reads displayed.

AGTTTAATGACTATTGCGGAAAGATTGCGGCAGGAGGGGGAACAATCCAAAGCCCTGCATATAGCCAAA  >  REL606/3472555‑3472623
                                  |                                  
agTTTAATGACTATTGCGGAAAGATTGCGGCagga                                    <  1:3697501/35‑1 (MQ=255)
 gTTTAATGACTATTGCGGAAAGATTGCGGCaggag                                   <  1:1299604/35‑1 (MQ=255)
  aacgtccgccagccttgctgctttatggcaggggg                                  >  1:17642712‑M2/33‑35 (MQ=255)
  aacgtccgccagccttgctgctttatggcaggggg                                  >  1:7020724‑M2/33‑35 (MQ=255)
  aacgtccgccagccttgctgctttatggcaggggg                                  >  1:4303964‑M2/33‑35 (MQ=255)
   ttAATGACTATTGCGGAGAGATTGCGGCAGGAggg                                 <  1:6907222/35‑1 (MQ=255)
   ttAATGACTATTGCGGAAAGATTGCGGCAGGGggg                                 >  1:6695498/1‑35 (MQ=255)
   ttAATGACTATTGCGGAAAGATTGCGGCAGGGggg                                 >  1:12105132/1‑35 (MQ=255)
   ttAATGACTATTGCGGAAAGATTGCGGCAGGAggg                                 <  1:11921236/35‑1 (MQ=255)
   acgtccgccagccttgctgctttatggcaggGggg                                 >  1:937109‑M2/32‑35 (MQ=255)
   acgtccgccagccttgctgctttatggcaggGggg                                 >  1:12968281‑M2/32‑35 (MQ=255)
     gtccgccagccttgctgctttatggcaggggggga                               >  1:19774989‑M2/30‑34 (MQ=255)
     gtccgccagccttgctgctttatggcaggGggggg                               >  1:646292‑M2/30‑35 (MQ=255)
     aaTGACTATTGCGGAAAGATTGCGGCAGGAggggg                               <  1:8039235/35‑1 (MQ=255)
      aTGACTNTTGCGGAAAGATTGCGGCAGGGgggggg                              >  1:3847443/1‑34 (MQ=37)
      aTGACTATTGCTGAACGGCTAAGGCAGGGgggggg                              >  1:20121794/1‑34 (MQ=21)
      aTGACTATTGCGGAAAGATTGCGGCAGGGgggggg                              >  1:5643256/1‑34 (MQ=255)
      aTGACTATTGCGGAAAGATTGCGGCAGGGgggggg                              >  1:1303474/1‑34 (MQ=255)
       tGACTATTGCTGAACGGCTACGGCAGGGgggggcg                             >  1:137804/1‑33 (MQ=25)
       tGACTATTGCGGAAAGATTGCGGCAGGGgggggga                             >  1:7964262/1‑33 (MQ=37)
       tGACTATTGCGGAAAGATTGCGGCAGGAGGGGGaa                             <  1:13199790/35‑1 (MQ=255)
       ccgccagccttgctgctttatggcaggGGGGGgac                             >  1:5685130‑M2/28‑34 (MQ=255)
        gACTATTGCTGAACGGCTACGGCAGGGggggggtg                            >  1:6345766/1‑32 (MQ=25)
        gACTATTGCTGAACGGCTACGGCAGGGggggggtc                            >  1:17104341/1‑32 (MQ=25)
        gACTATTGCTGAACGGCTACGGCAGGGggggggtc                            >  1:9559745/1‑32 (MQ=25)
        gACTATTGCGGAAAGATTGCGGCAGGGggggggag                            >  1:14986759/1‑32 (MQ=25)
        gACTATTGCGGAAAGATTGCGGCAGGGggggggaa                            >  1:13665188/1‑32 (MQ=25)
        gACTATTGCGGAAAGATTGCGGCAGGGGGGGGGAc                            >  1:18575162/1‑35 (MQ=25)
        gACTATTGCGGAAAGATTGCGGCAGGAGGGGGAAc                            <  1:1234012/35‑1 (MQ=255)
         gccagccttgctgctttatggcaggGGGGGGAACa                           >  1:9410367‑M2/26‑35 (MQ=255)
         aCTATTGCGGAAAGATTGCGGCAGGGGGGGGGACa                           >  1:8999212/1‑35 (MQ=25)
          nnaNTNNGGAAAGATTGCGGCAGGAGGGGGAACaa                          <  1:8854203/33‑1 (MQ=38)
          ccagccttgctgctttatggcaggGGGGGGAACaa                          >  1:2042494‑M2/25‑35 (MQ=255)
          cTATTGCGGAAAGATTGCGGCAGGAGGGGGAACaa                          <  1:5351101/35‑1 (MQ=255)
           tATTGCGGAAAGATTGCGGCAGGGGGGGGGACaag                         >  1:19488234/1‑34 (MQ=25)
           tATTGCGGAAAGATTGCGGCAGGGGGGGGGACaaa                         >  1:15876386/1‑34 (MQ=25)
           tATTGCGGAAAGATTGCGGCAGGAGGGGGAACAAt                         <  1:2277707/35‑1 (MQ=255)
            aTTGCGGAAAGATTGCGGCAGGAGGGGGGACaaac                        >  1:5505484/1‑33 (MQ=37)
            aTTGCGGAAAGATTGCGGCAGGAGGGGGAACAATc                        <  1:12359679/35‑1 (MQ=255)
             ttGCGGAAAGATTGCGGCAGGAGGGGGAACAATcc                       <  1:8205307/35‑1 (MQ=255)
             ttGCGGAAAGATTGCGGCAGGAGGGGGAACAATcc                       <  1:7751496/35‑1 (MQ=255)
              tGCGGAAAGATTGCGGCAGGGGGGGGGAGAATccc                      >  1:3565307/1‑34 (MQ=21)
              tGCGGAAAGATTGCGGCAGGGGGGGGGACAATCCa                      >  1:1357650/1‑35 (MQ=25)
              tGCGGAAAGATTGCGGCAGGAGGGGGAACAATCCa                      <  1:10874033/35‑1 (MQ=255)
               gCGGAAAGATTGCGGCAGGAGGGGGAACAATCCaa                     <  1:10076316/35‑1 (MQ=255)
                cGGAAAGATTGCGGCAGGGGGGGGGACAATCCaaa                    >  1:2477827/1‑35 (MQ=37)
                cGGAAAGATTGCGGCAGGGGGGGGGACAATCCaaa                    >  1:5409420/1‑35 (MQ=37)
                cGGAAAGATTGCGGCAGGAGGGGGAACAATCCaaa                    <  1:458246/35‑1 (MQ=255)
                cGGAAAGATTGCGGCAGGAGGGGGAACAATCCaaa                    <  1:19103360/35‑1 (MQ=255)
                cGGAAAGATTGCGGCAGGAGGGGGAACAATCCaaa                    <  1:3109844/35‑1 (MQ=255)
                 ggAAAGATTGCGGCAGGGGGGGGGGCAAAACAAAg                   >  1:469906/1‑35 (MQ=12)
                 ggAAAGATTGCGGCAGGAGGGGGAACAATCCAAAg                   <  1:18807964/35‑1 (MQ=255)
                 ggAAAGATTGCGGCAGGAGGGGGAACAATCCAAAg                   <  1:14623029/35‑1 (MQ=255)
                 ggAAAGATTGCGGCAGGAGGGGGAACAATCCAAAg                   <  1:6181692/35‑1 (MQ=255)
                  gAAAGATTGCGGCAGGAGGGGGAACAATCCAAAGc                  <  1:11402203/35‑1 (MQ=255)
                  gAAAGATTGCGGCAGGAGGGGGAACAATCCAAAGc                  <  1:1800269/35‑1 (MQ=255)
                   aaaGATTGCGGCAGGAGGGGGAACAATCCAAAGcc                 <  1:19244963/35‑1 (MQ=255)
                    aaGATTGCGGCAGGGGGGGGGACAATCCAAAGccc                >  1:2500450/1‑35 (MQ=37)
                    aaGATTGCGGCAGGAGGGGGAACAATCCAAAGccc                <  1:5783991/35‑1 (MQ=255)
                    aaGATTGCGGCAGGAGGGGGAACAATCCAAAGccc                <  1:16036906/35‑1 (MQ=255)
                    aaGATTGCGGCAGGAGGGGGAACAATCCAAAGccc                <  1:6891916/35‑1 (MQ=255)
                    aaGATTGCGGCAGGAGGGGGAACAATCCAAAGacc                <  1:15640120/35‑1 (MQ=255)
                     aGATTGCGGCAGGAGGGGGAACAATCCAAAGCCCt               <  1:6685990/35‑1 (MQ=255)
                       aTTGCGGCAGGAGGGGGAACAATCCAAAGCCCTGc             <  1:958000/35‑1 (MQ=255)
                       aTTGCGGCAGGAGGGGGAACAATCCAAAGCCCTGc             <  1:11057939/35‑1 (MQ=255)
                        ttGCGGCAGGAGGGGGAACAATCCAAAGCCCTGCa            <  1:18838903/35‑1 (MQ=255)
                         tGCGGCAGGGGGGGGGACAATCCAAAGACCCGCat           >  1:20321197/1‑35 (MQ=19)
                         tGCGGCAGGAGGGGGAACAATCCAAAGCCCTGCat           <  1:16392080/35‑1 (MQ=255)
                          gCGGCAGGAGGGGGAACAATCCAAAGCCCTGCata          <  1:5080916/35‑1 (MQ=255)
                          gCGGCAGGAGGGGGAACAATCCAAAGCCCTGCata          <  1:1567503/35‑1 (MQ=255)
                           cGGCAGGAGGGGGAACAATCCAAAGCCCTGCatat         <  1:13137336/35‑1 (MQ=255)
                           cGGCAGGAGGGGGAACAATCCAAAGCCCTGCatat         <  1:10766387/35‑1 (MQ=255)
                           cGGCAGGAGGGGGAACAATCCAAAGCCCTGCatat         <  1:172540/35‑1 (MQ=255)
                           cGGCAGGAGGGGGAACAATCCAAAGCCCTGCatat         <  1:3503006/35‑1 (MQ=255)
                            ggcaggAGGGGGAACAATCCAAAGCCCTGCAtata        <  1:13426732‑M2/29‑1 (MQ=255)
                            ggcaggAGGGGGAACAATCCAAAGCCCTGCAtata        >  1:14664755‑M2/7‑35 (MQ=255)
                            ggcaggAGGGGGAACAATCCAAAGCCCTGCAtata        >  1:5226133‑M2/7‑35 (MQ=255)
                             gcaggAGGGGGAACAATCCAAAGCCCTGCATATAg       <  1:2344286‑M2/30‑1 (MQ=255)
                             gcaggAGGGGGAACAATCCAAAGCCCTGCATATAg       <  1:6629345‑M2/30‑1 (MQ=255)
                             gcaggAGGGGGAACAATCCAAAGCCCTGCATATAg       <  1:4186111‑M2/30‑1 (MQ=255)
                             gcaggAGGGGGAACAATCCAAAGCCCTGCATATAg       <  1:4529630‑M2/30‑1 (MQ=255)
                              caggAGGGGGAACAATCCAAAGCCCTGCATATAGc      >  1:5758066‑M2/5‑35 (MQ=255)
                              caggAGGGGGAACAATCCAAAGCCCTGCATATAGc      >  1:14413924‑M2/5‑35 (MQ=255)
                               aggAGTGGGAACAATCCAAAGCCCTGCATATAGcc     >  1:11471039‑M2/4‑35 (MQ=255)
                               aggAGGGGGAACAATCCAAAGCCCTGCATATAGcc     >  1:8757093‑M2/4‑35 (MQ=255)
                               aggAGGGGGAACAATCCAAAGCCCTGCATATAGcc     >  1:8321688‑M2/4‑35 (MQ=255)
                               aggAGGGGGAACAATCCAAAGCCCTGCATATAGcc     >  1:10414587‑M2/4‑35 (MQ=255)
                               aggAGGGGGAACAATCCAAAGCCCTGCATATAGcc     >  1:14842520‑M2/4‑35 (MQ=255)
                               aggAGGGGGAACAATCCAAAGCCCTGCATATAGcc     >  1:4271255‑M2/4‑35 (MQ=255)
                               aggAGGGGGAACAATCCAAAGCCCTCCATATAGcc     >  1:4713059‑M2/4‑35 (MQ=255)
                                 gAGGGGGAACAATCCAAAGCCCTGCATATAGCCaa   >  1:13105425‑M2/2‑35 (MQ=255)
                                 gAGGGGGAACAATCCAAAGCCCTGCATATAGCCaa   <  1:12861921‑M2/34‑1 (MQ=255)
                                 gAGGGGGAACAATCCAAAGCCCTGCATATAGCCaa   >  1:7189769‑M2/2‑35 (MQ=255)
                                  aggGGGAACAATCCAAAGCCCTGCATATAGCCaaa  >  1:2022283/1‑35 (MQ=255)
                                  aggGGGAACAATCCAAAGCCCTGCATATAGCCaaa  >  1:145065/1‑35 (MQ=255)
                                  aggGGGAACAATCCAAAGCCCTGCATATAGCCaaa  >  1:263706/1‑35 (MQ=255)
                                  aggGGGAACAATCCAAAGCCCTGCATATAGCCaaa  >  1:40085/1‑35 (MQ=255)
                                  aggGGGAACAATCCAAAGCCCTGCATATAGCCaaa  >  1:1025331/1‑35 (MQ=255)
                                  aggGGGAACAATCCAAAGCCCTGCATATAGCCaaa  >  1:15699024/1‑35 (MQ=255)
                                  aggGGGAACAATCCAAAGCCCTGCATATAGCCaaa  >  1:9678177/1‑35 (MQ=255)
                                  |                                  
AGTTTAATGACTATTGCGGAAAGATTGCGGCAGGAGGGGGAACAATCCAAAGCCCTGCATATAGCCAAA  >  REL606/3472555‑3472623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.