New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 98960956 (0.540)13 (0.160) 4/38 NT 32.0% coding (766/894 nt) ycbJ hypothetical protein
?REL606 2795469 = 11 (0.140)coding (831/873 nt) ygcG hypothetical protein

Only 100 of 118 total aligned reads displayed.

GCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCGTTGGTTGTATGTGTT  >  REL606/989575‑989643
                                  |                                  
gCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGG                                    >  1:13547320‑M1/1‑35 (MQ=255)
gCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGG                                    <  1:6104612‑M1/35‑1 (MQ=255)
gCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGG                                    >  1:12273941‑M1/1‑35 (MQ=255)
 ctctGGAGTTACCTGCAACGCGCGCCAGTGGCGGg                                   >  1:10481470‑M1/1‑34 (MQ=255)
  tctGGAGTTACCTGCAACGCGCGCCAGTGGCGGgg                                  >  1:7944263‑M1/1‑33 (MQ=255)
  tctGGAGTTACCTGCAACGCGCGCCAGTGGCGGAg                                  <  1:15705779/35‑1 (MQ=255)
   ctGGAGTTACCTTCAACGCGCGCCAGTGGCGGggg                                 >  1:4592357‑M1/1‑32 (MQ=255)
   ctGGAGTTACCTGCAACGCGCGCCAGTGGCGGggg                                 >  1:8718294‑M1/1‑32 (MQ=255)
   ctGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGt                                 <  1:3326295/35‑1 (MQ=255)
    tGGAGTTACGTGCAACGCGCGCCAGTGGCGGgggg                                >  1:14687469‑M1/1‑31 (MQ=255)
    tGGAGTTACCTGCAACGCGCGCCAGTGGCGGAggc                                >  1:19445057/1‑33 (MQ=255)
    tGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTc                                <  1:15821397/35‑1 (MQ=255)
    tGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTc                                <  1:19009727/35‑1 (MQ=255)
    tGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTc                                <  1:16947371/35‑1 (MQ=255)
    tGGAGTTACCTGCAACGCGCGCCAGTGGAGGAGTc                                <  1:5153718/35‑1 (MQ=255)
     ggAGTTACCTGCAACGCGCGCCAGTGGCGGgggcg                               >  1:3193225‑M1/1‑30 (MQ=255)
     ggAGTTACCTGCAACGCGCGCCAGTGGCGGgggca                               >  1:13625183‑M1/1‑30 (MQ=255)
     ggAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCg                               <  1:13956713/35‑1 (MQ=255)
     ggAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCg                               <  1:19480525/35‑1 (MQ=255)
      gAGTTACCTGCAACGCGCGCCAGTGGCGGgggcgt                              >  1:20112009‑M1/1‑29 (MQ=255)
      gAGTTACCTGCAACGCGCGCCAGTGGCGGgggcgg                              >  1:256790‑M1/1‑29 (MQ=255)
      gAGTTACCTGCAACGCGCGCCAGTGGCGGgggcgg                              >  1:3733318‑M1/1‑29 (MQ=255)
      gAGTTACCTGCAACGCGCGCCAGTGGCGGgggagt                              >  1:17837103‑M1/1‑29 (MQ=255)
      gAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGt                              <  1:5504490/35‑1 (MQ=255)
      gAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGt                              <  1:14549004/35‑1 (MQ=255)
       aGTTACCTGCAACGCGCGCCAGTGGCGGggggggt                             >  1:209421‑M1/1‑28 (MQ=255)
       aGTTACCTGCAACGCGCGCCAGTGGCGGgggcggt                             >  1:9407853‑M1/1‑28 (MQ=255)
       aGTTACCTGCAACGCGCGCCAGTGGCGGGGACGtt                             >  1:17833631/1‑35 (MQ=25)
        gTTACCTGCAACGCGCGCCAGTGGCGGggggggtc                            >  1:703186‑M1/1‑27 (MQ=255)
        gTTACCTGCAACGCGCGCCAGTGGCGGgggcggtg                            >  1:16866409‑M1/1‑27 (MQ=255)
        gTTACCTGCAACGCGCGCCAGTGGCGGgggcggtc                            >  1:17744746‑M1/1‑27 (MQ=255)
        gTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTc                            <  1:5841281/35‑1 (MQ=255)
         ttACCTGCAACGCGCGCCAGTGGCGGgggcggttc                           >  1:6223488‑M1/1‑26 (MQ=255)
         ttACCTGCAACGCGCGCCAGTGGCGGgggcggtcc                           >  1:17778729‑M1/1‑26 (MQ=255)
         ttACCTGCAACGCGCGCCAGTGGCGGgggcggtca                           >  1:1318561‑M1/1‑26 (MQ=255)
         ttACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCa                           <  1:19224003/35‑1 (MQ=255)
         ttACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCa                           <  1:20010347/35‑1 (MQ=255)
         ttACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCa                           <  1:17434508/35‑1 (MQ=255)
         ttACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCa                           <  1:4905307/35‑1 (MQ=255)
         ttACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCa                           <  1:12074042/35‑1 (MQ=255)
         ttACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCa                           <  1:16671630/35‑1 (MQ=255)
          tACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCAt                          <  1:17112127/35‑1 (MQ=255)
           aCCTGCAACGCGCGCCAGTGGCGGggtcggttctc                         >  1:11433879‑M1/1‑24 (MQ=255)
           aCCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATc                         <  1:2620691/35‑1 (MQ=255)
            ccTGCAACGCGCGCCAGTGGCGGGGGCGGTCTTCt                        >  1:1564773/1‑35 (MQ=16)
            ccTGCAACGCGCGCCAGTGGCGGGGGCGGTCCTCt                        >  1:14143038/1‑35 (MQ=16)
            ccTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCt                        <  1:20425202/35‑1 (MQ=255)
            ccTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCt                        <  1:17178532/35‑1 (MQ=255)
             cTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTg                       <  1:16716154/35‑1 (MQ=255)
             cTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTg                       <  1:19838959/35‑1 (MQ=255)
             cTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTg                       <  1:10970386/35‑1 (MQ=255)
             cTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTg                       <  1:18706471/35‑1 (MQ=255)
              tGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTgg                      <  1:13870409/35‑1 (MQ=255)
              tGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTgg                      <  1:28813/35‑1 (MQ=255)
              tGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTgg                      <  1:9048427/35‑1 (MQ=255)
              tGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTgg                      <  1:3953584/35‑1 (MQ=255)
              tGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTgg                      <  1:5770244/35‑1 (MQ=255)
              tGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTgg                      <  1:15177998/35‑1 (MQ=255)
               gCAACGCGCGCCAGTGGCGGAGTCGTTCATCTggc                     <  1:15463218/35‑1 (MQ=255)
               gCAACGCGCGCCAGTGGCGGAGTCGTTCATCTggc                     <  1:20571922/35‑1 (MQ=255)
                cAACGCGCGCCAGTGGCGGGGGCGGTCATCTggcg                    >  1:7161848/1‑35 (MQ=21)
                cAACGCGCGCCAGTGGCGGAGTCGTTCATCTggcg                    <  1:13490585/35‑1 (MQ=255)
                cAACGCGCGCCAGTGGCGGAGTCGTTCATCTggcg                    <  1:1722842/35‑1 (MQ=255)
                cAACGCGCGCCAGTGGCGGAGTCGTTCATCTggcg                    <  1:11296854/35‑1 (MQ=255)
                 aaCGCGCGCCAGTGGCGGAGTCGTTCATCTggcgg                   <  1:17064050/35‑1 (MQ=255)
                  aCGCGCGCCAGTGGCGGAGTCGTTCATCTggcggc                  <  1:13604323/35‑1 (MQ=255)
                  aCGCGCGCCAGTGGCGGAGTCGTTCATCTggcggc                  <  1:3598148/35‑1 (MQ=255)
                  aCGCGCGCCAGTGGCGGAGTCGTTCATCTggcggc                  <  1:14745836/35‑1 (MQ=255)
                  aCGCGCGCCAGTGGCCGAGTCGTTCATCTggcggc                  >  1:18937952/1‑35 (MQ=255)
                    gcgcgcCAGTGGCGGAGTCGTTCATCTGGCGGCgt                <  1:10068010/35‑1 (MQ=255)
                     cgcgcCAGTGGCGGAGTCGTTCATCTGGCGGCgtt               <  1:17931460/35‑1 (MQ=255)
                     cgcgcCAGTGGCGGAGTCGTTCATCTGGCGGCgtt               <  1:4658216/35‑1 (MQ=255)
                       cgcCAGTGGCGGAGTCGTTCATCTGGCGGCgttgg             <  1:12717027/35‑1 (MQ=255)
                        gcCAGTGGCGTAGTCGTTCATCTGGCGGGgttggt            >  1:14066597/1‑35 (MQ=37)
                        gcCAGTGGCGGAGTCGTTCATCTGGCGGCgttggt            <  1:9466499/35‑1 (MQ=255)
                         ccAGTGGCGGAGTCGTTCATCTGGCGGCgttggtt           <  1:1749918/35‑1 (MQ=255)
                           aGTGGCGGAGTCGTTCATCTGGCGGCGTTGGTTGt         <  1:14996/35‑1 (MQ=255)
                           aGTGGCGGAGTCGTTCATCTGGCGGCGTTGGTTGt         <  1:12857899/35‑1 (MQ=255)
                            gTGGCGGAGTCGTTCATCTGGCGGCGTTGGTTGTa        <  1:6685362/35‑1 (MQ=255)
                             tGGCGGAGTCGTTCATCTGGCGGCGTTTGTTGTAt       >  1:697871/1‑35 (MQ=255)
                              ggCGGAGTCGTTCATCTGGCGGCGTTGGTTGTGtg      >  1:4571466/1‑35 (MQ=255)
                              ggCGGAGTCGTTCATCTGGCGGCGTTGGTTGTAtg      <  1:13564908/35‑1 (MQ=255)
                              ggCGGAGTCGTTCATCTGGCGGCGTTGGTTGTAtg      <  1:19766202/35‑1 (MQ=255)
                               gCGGgggcggttcttctggaggtggcggcgcatcc     <  1:7857409‑M1/35‑32 (MQ=255)
                               gCGGgggcggttcttctggaggtggcggcgcatcc     <  1:15607195‑M1/35‑32 (MQ=255)
                               gCGGAGTCGTTCATCTGGCGGCGTTGGTTGTAtgt     <  1:9469854/35‑1 (MQ=255)
                               gCGGAGTCGTTCATCTGGCGGCGTTGGTTGTAtgt     <  1:1395538/35‑1 (MQ=255)
                                cGGgggcggttcttctggaggtggcggcgcatccg    <  1:17137562‑M1/35‑33 (MQ=255)
                                cGGgggcggttcttctggaggtggcggcgcatccg    <  1:3707507‑M1/35‑33 (MQ=255)
                                cGGAGTCGTTCATCTGGCGGGGTTGGTTGGGtgtg    >  1:12910914/1‑35 (MQ=25)
                                cGGAGTCGTTCATCTGGCGGCGTTGGTTGTAtgtg    >  1:4390359/1‑35 (MQ=255)
                                cGGAGTCGTTCATCTGGCGGCGTTGGTTGTAtgtg    <  1:7323944/35‑1 (MQ=255)
                                cGGAGTCGTTCATCTGGCGGCGTTGGTTGTAtggg    >  1:19761513/1‑33 (MQ=255)
                                cGGAGTCGTTCATCTGGCGGCGTTGGTTGGAtgtg    >  1:2828638/1‑35 (MQ=255)
                                 gggggcggttcttctggaggtggcggcgcatccgg   <  1:2422434‑M1/35‑34 (MQ=255)
                                 ggAGTCTGTCATCTGGCGGCGTTGGTTGTATgtgt   <  1:12146834/35‑1 (MQ=37)
                                 ggAGTCGTTCATCTGGCGGCGTTGGTTGTATgtgt   <  1:16401907/35‑1 (MQ=255)
                                 ggAGTCGTTCATCTGGCGGCGTTGGTTGTATgtgt   <  1:10208424/35‑1 (MQ=255)
                                  gAGTCGTTCATCTGGCGGCGTTGGTTGTATGTGtt  <  1:18728844/35‑1 (MQ=255)
                                  gAGTCGTTCATCTGGCGGCGTTGGTTGTATGTGtt  <  1:19085482/35‑1 (MQ=255)
                                  |                                  
GCTCTGGAGTTACCTGCAACGCGCGCCAGTGGCGGAGTCGTTCATCTGGCGGCGTTGGTTGTATGTGTT  >  REL606/989575‑989643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.