Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 3,401,754 C→A 100% R78L (CGC→CTC)  rpsG ← 30S ribosomal protein S7

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,401,7540C→A100.0% 354.0 112R78L (CGC→CTC) rpsG30S ribosomal protein S7
Reads supporting (aligned to +/- strand):  new base (54/58):  ref base (0/0):  total (54/58)

Only 100 of 125 total aligned reads displayed.

CTGGTACCTGATAAGTAGAACCACCAACGCGGCGAGACTTAACTTCTACAGTCGGGCGCACGTT  >  REL606/3401722‑3401785
                                |                               
cTGGTACCTGATAAGTAGAACCACCAACGCGGAga                               >  1:9356556/1‑35 (MQ=255)
cTGGTACCTGATAAGTAGAACCACCAACGCGGAga                               >  1:16428133/1‑35 (MQ=255)
cTGGTACCTGATAAGTAGAACCACCAACGCGGAga                               >  1:15969958/1‑35 (MQ=255)
cTGGTACCTGATAAGTAGAACCACCAACGCGGAga                               >  1:10061025/1‑35 (MQ=255)
  ggTACCTGATAAGTAGAACCACCAACGCGGAgaga                             >  1:4127222/1‑35 (MQ=255)
   gTACCTGATAAGTAGACCCACCAACGCGGAGAGAc                            <  1:13198222/35‑1 (MQ=255)
   gTACCTGATAAGTAGAACCACCAACGCGGAGAGAc                            >  1:2856579/1‑35 (MQ=255)
   gTACCTGATAAGTAGAACCACCAACGCGGAGAGAc                            >  1:281286/1‑35 (MQ=255)
   gTACCTGATAAGTAGAACCACCAACGCGGAGAGAc                            >  1:4258588/1‑35 (MQ=255)
   gTACCTGATAAGTAGAACCACCAACGCGGAGAGAc                            >  1:5489026/1‑35 (MQ=255)
   gTACCTGATAAGTAGAACCACCAACGCGGAGAGAc                            >  1:1150002/1‑35 (MQ=255)
    tACCTGATAAGTAGAACCACCAACGCGGAGAGACt                           >  1:3996945/1‑35 (MQ=255)
    tACCTGATAAGTAGAACCACCAACGCGGAGAGACt                           >  1:8200488/1‑35 (MQ=255)
    tACCGGATAAGTAGACCCACCAACGCGGAGAGACt                           <  1:9227819/35‑1 (MQ=255)
     aCCTGATAAGTAGACCCACCAACGCGGAGAGACtt                          <  1:8327411/35‑1 (MQ=255)
      ccTGATAAGTAGACCCACCAACGCGGAGAGACTTa                         <  1:11876110/35‑1 (MQ=255)
      ccTGATAAGTAGAACCACCAACGCGGAGAGACTTa                         >  1:18295780/1‑35 (MQ=255)
      ccTGATAAGTAGAACCACCAACGCGGAGAGACTTa                         >  1:18362248/1‑35 (MQ=255)
      ccTGATAAGTAGAACCACCAACGCGGAGAGACTTa                         >  1:838886/1‑35 (MQ=255)
      ccTGATAAGTAGAACCACCAACGCGGAGAGACTTa                         >  1:5705756/1‑35 (MQ=255)
       cTGATAAGTAGAACCACCAACGCGGAGAGACTTaa                        >  1:12418504/1‑35 (MQ=255)
       cTGATAAGTAGAACCACCAACGCGGAGAGACTTaa                        >  1:17341466/1‑35 (MQ=255)
       cTGATAAGTAGAACCACCAACGCGGAGAGACTTaa                        >  1:10337530/1‑35 (MQ=255)
        tGATAAGTAGAACCACCAACGCGGAGAGACTTAAc                       >  1:66819/1‑35 (MQ=255)
         gATAAGTAGACCCACCAACGCGGAGAGACTTAACt                      <  1:17795744/35‑1 (MQ=255)
         gATAAGTAGAACCACCAACGCGGAGAGACTTAACt                      <  1:4423757/35‑1 (MQ=255)
          aTAAGTAGAACCACCAACGCGGAGAGACTTAACtt                     >  1:279579/1‑35 (MQ=255)
          aTAAGTAGAACCACCAACGCGGAGAGACTTAACtt                     >  1:11969972/1‑35 (MQ=255)
           tAAGTAGACCCACCAACGCGGAGAGACTTAACTTc                    <  1:14139829/35‑1 (MQ=255)
           tAAGTAGACCCACCAACGCGGAGAGACTTAACTTc                    <  1:18800904/35‑1 (MQ=255)
           tAAGTAGAACCACCAACGCGGAGAGACTTAACTTc                    >  1:9332360/1‑35 (MQ=255)
           tAAGTAGAACCACAAACGCGGAGAGACTTAACTTc                    <  1:8782476/35‑1 (MQ=38)
           aaaGTAGAACCACCAACGCGGAGAGACTTAACTTc                    <  1:1099081/34‑1 (MQ=255)
            aaGTAGACCCACCAACGCGGAGAGACTTAACTTCt                   <  1:17800854/35‑1 (MQ=255)
            aaGTAGACCCACCAACGCGGAGAGACTTAACTTCt                   <  1:19283221/35‑1 (MQ=255)
            aaGTAGACCCACCAACGCGGAGAGACTTAACTTCt                   <  1:1529986/35‑1 (MQ=255)
            aaGTAGAACCACCAACGCGGAGAGACTTAACTTCt                   >  1:3332217/1‑35 (MQ=255)
            aaGTAGAACCACCAACGCGGAGAGACTTAACTTCt                   >  1:4771603/1‑35 (MQ=255)
             tttAGAGCCACCAACGCGGAGAGACTTAACTTCTa                  <  1:16696361/33‑1 (MQ=255)
             ggTAGAACCACCAACGCGGAGAGACTTAACTTCTa                  <  1:19612186/34‑1 (MQ=255)
             agaaGACCCACCAACGCGGAGAGACTTAACTTCTa                  <  1:11888375/32‑1 (MQ=255)
             aGTAGACCCACCAACGCGGAGAGACTTAACTTCTa                  <  1:6009938/35‑1 (MQ=255)
             aGTAGAACCACCAACGCGGAGAGACTTAACTTCTa                  <  1:20383899/35‑1 (MQ=255)
             aGTAGAACCACCAACGCGGAGAGACTTAACTTCTa                  <  1:12969828/35‑1 (MQ=255)
             aGTAAACCCACCAACGCGGAGAGACTTAACTTCTa                  <  1:5512836/35‑1 (MQ=255)
              gTAGAACCACCAACGCGGAGAGACTTAACTTCTAc                 <  1:3900523/35‑1 (MQ=255)
              gTAGAACCACCAACGCGGAGAGACTTAACTTCTAc                 <  1:20060991/35‑1 (MQ=255)
              gTAGAACCACCAACGCGGAGAGACTTAACTTCTAc                 <  1:16620527/35‑1 (MQ=255)
              gTAGAACCACAAACGCGGAGAGACTTAACTTCTAc                 <  1:13378165/35‑1 (MQ=38)
               tAGACCCACCAACGCGGAGAGACTTAACTTCTACa                <  1:17153902/35‑1 (MQ=255)
               tAGAACCACCAACGCGGAGAGACTTAACTTCTACa                >  1:3677994/1‑35 (MQ=255)
               tAGAACCACCAACGCGGAGAGACTTAACTTCTACa                >  1:3256460/1‑35 (MQ=255)
                aGACCCACCAACGCGGAGAGACTTAACTTCTACAg               <  1:648110/35‑1 (MQ=255)
                aGACCCACCAACGCGGAGAGACTTAACTTCTACAg               <  1:8784264/35‑1 (MQ=255)
                aGACCCACCAACGCGGAGAGACTTAACTTCTACAg               <  1:13162726/35‑1 (MQ=255)
                aGAACCACCAACGCGGAGAGACTTAACTTCTACAg               >  1:16098928/1‑35 (MQ=255)
                 gacccaccaACGCGGAGAGACTTAACTTCTACAGt              <  1:4745759/32‑1 (MQ=255)
                 gAACCACCAACGCGGAGAGACTTAACTTCTACAGt              >  1:18628211/1‑35 (MQ=255)
                 gAACCACCAACGCGGAGAGACTTAACTTCTACAGt              >  1:11961649/1‑35 (MQ=255)
                 gAACCACCAACGCGGAGAGACTTAACTTCTACAGn              <  1:17740661/35‑1 (MQ=255)
                  acccaccaACGCGGAGAGACTTAACTTCTACAGTc             <  1:1887502/33‑1 (MQ=255)
                  acccaccaACGCGGAGAGACTTAACTTCTACAGTc             <  1:17808752/33‑1 (MQ=255)
                  acccaccaACGCGGAGAGACTTAACTTCTACAGTc             <  1:17707376/33‑1 (MQ=255)
                  acccaccaACGCGGAGAGACTTAACTTCTACAGTc             <  1:4531544/33‑1 (MQ=255)
                  aaCCACCAACGCGGAGAGACTTAACTTCTACAGTc             >  1:13905090/1‑35 (MQ=255)
                  aaCCACCAACGCGGAGAGACTTAACTTCTACAGTc             <  1:19163153/35‑1 (MQ=255)
                  aaCCACCAACGCGGAGAGACTTAACTTCTACAGTc             >  1:17100511/1‑35 (MQ=255)
                   cccaccaACGCGGAGAGACTTAACTTCTACAGTCg            <  1:10451284/34‑1 (MQ=255)
                   cccaccaACGCGGAGAGACTTAACTTCTACAGTCg            <  1:15059325/34‑1 (MQ=255)
                   accaccAACGCGGAGAGACTTAACTTCTACAGTCg            >  1:4378400/1‑35 (MQ=255)
                    ccaccaACGCGGAGAGACTTAACTTCTACAGTCgg           <  1:9259901/35‑1 (MQ=255)
                    ccaccaACGCGGAGAGACTTAACTTCTACAGTCgg           >  1:8728744/1‑35 (MQ=255)
                    ccaccaACGCGGAGAGACTTAACTTCTACAGTCgg           <  1:14373613/35‑1 (MQ=255)
                     cgccaACGCGGAGAGACTTAACTTCTACAGTCggg          <  1:10070986/33‑1 (MQ=255)
                     caccaACGCGGAGAGACTTAACTTCTACAGTCggg          <  1:11552511/35‑1 (MQ=255)
                     caccaACGCGGAGAGACTTAACTTCTACAGTCggg          >  1:18813230/1‑35 (MQ=255)
                      accaACGCGGAGAGACTTAACTTCTACAGTCgggg         >  1:2828983/1‑34 (MQ=255)
                      accaACGCGGAGAGACTTAACTTCTACAGTCgggg         >  1:2104090/1‑34 (MQ=255)
                      accaACGCGGAGAGACTTAACTTCTACAGTCGGgc         <  1:16576845/35‑1 (MQ=255)
                      accaACGCGGAGAGACTTAACTTCTACAGTCGGgc         <  1:15418248/35‑1 (MQ=255)
                      accaACGCGGAGAGACTTAACTTCTACAGTCGGgc         <  1:19336690/35‑1 (MQ=255)
                       ccaACGCTGAGAGACTTAACTTCTACAGTCGGgcg        >  1:7064607/1‑35 (MQ=38)
                         aaCGCGGAGAGACTTAACTTCTACAGTCGTGCGCa      >  1:15748952/1‑35 (MQ=255)
                         aaCGCGGAGAGACTTAACTTCTACAGTCGGGCGCa      <  1:10685749/35‑1 (MQ=255)
                         aaCGCGGAGAGACTTAACTTCTACAGTCGGGCGCa      >  1:1943509/1‑35 (MQ=255)
                         aaCGCGGAGAGACTTAACTTCTACAGTCGGGCGCa      >  1:14037621/1‑35 (MQ=255)
                          aCGCGGAGAGACTTAACTTCTACAGTCGGGCGGAc     >  1:16932146/1‑35 (MQ=38)
                          aCGCGGAGAGACTTAACTTCTACAGTCGGGCGCAc     <  1:16214754/35‑1 (MQ=255)
                          aCGCGGAGAGACTTAACTTCTACAGTCGGGCGCAc     <  1:13501359/35‑1 (MQ=255)
                          aCGCGGAGAGACTTAACTTCTACAGTCGGGCGCAc     <  1:5407100/35‑1 (MQ=255)
                          aCGCGGAGAGACTTAACTTCTACAGTCGGGAGCAc     >  1:19917498/1‑35 (MQ=255)
                           cgcgGAGAGACTTAACTTCTACAGTCGGGCGCACg    >  1:6090466/1‑35 (MQ=255)
                           cgcgGAGAGACTTAACTTCTACAGTCGGGCGCACg    <  1:7500896/35‑1 (MQ=255)
                           cgcgGAGAGACTTAACTTCTACAGTCGGGCGCACg    <  1:4604810/35‑1 (MQ=255)
                            gcggagAGACTTAACTTCTACAGTCGGGCGCACGt   >  1:18485036/1‑35 (MQ=255)
                            gcggagAGACTTAACTTCTACAGTCGGGCGCACGt   <  1:4971144/35‑1 (MQ=255)
                             cggagAGACTTAACTTCTACAGTCGGGCGCACggt  >  1:871642/1‑33 (MQ=38)
                             cggagAGACTTAACTTCTACAGTCGGGCGCACGtt  >  1:14033706/1‑35 (MQ=255)
                             cggagAGACTTAACTTCTACAGTCGGGCGCACGtt  >  1:1356105/1‑35 (MQ=255)
                             cggagAGACTTAACTTCTACAGTCGGGCGCACGtt  <  1:3461297/35‑1 (MQ=255)
                                |                               
CTGGTACCTGATAAGTAGAACCACCAACGCGGCGAGACTTAACTTCTACAGTCGGGCGCACGTT  >  REL606/3401722‑3401785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.