New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 140702 =57 (0.550)10 (0.130) 3/36 NT 18.6% coding (817/1551 nt) cueO multicopper oxidase (laccase)
?REL606 1349560 = 45 (0.580)intergenic (‑152/+216) fabI/ycjD enoyl‑(acyl carrier protein) reductase/hypothetical protein

Only 100 of 144 total aligned reads displayed.

AGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAACCCTCTC  >  REL606/1349526‑1349592
                                  |                                
tcagttcgcgataactttcatactgctgtggcggg                                  <  1:7510409‑M1/2‑1 (MQ=255)
gcacttcaaaacgctcgcccatcagcaccggcagg                                  >  1:9850772‑M2/35‑35 (MQ=255)
gcacttcaaaacgctcgcccatcagcaccggcagg                                  >  1:2959269‑M2/35‑35 (MQ=255)
cccagcaccagttttccataaactgactCGGCAgg                                  <  1:15692893‑M1/7‑1 (MQ=255)
aGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgg                                  <  1:17043146/35‑1 (MQ=255)
aGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgg                                  >  1:17328625/1‑35 (MQ=255)
 gTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAggg                                 >  1:853651/1‑35 (MQ=255)
 gTTGCCAGGTCCGACCGGAGAAGGCTGCGGCAggg                                 <  1:18842897/35‑1 (MQ=255)
 ccagcaccagttttccataaactgactCGGCAggg                                 <  1:4546702‑M1/8‑1 (MQ=255)
 cagttcgcgataactttcatactgctgtggcgggg                                 <  1:17416080‑M1/3‑1 (MQ=255)
 cagttcgcgataactttcatactgctgtggcgggg                                 <  1:13914300‑M1/3‑1 (MQ=255)
  ttGCCAGGTCCGACCGGAGCAGGCTGCGGCAgggg                                >  1:6422443/1‑35 (MQ=255)
  ttGCCAGGTCCGACCGGAGCAGGCTGCGGCAgggg                                >  1:13093582/1‑35 (MQ=255)
  ttGCCAGGTCCGACCGGAGCAGGCTGCGGCAgggg                                <  1:6725099/35‑1 (MQ=255)
  cagcaccagttttccataaactgactCGGCAgggg                                <  1:4121101‑M1/9‑1 (MQ=255)
  agttcgcgataactttcatactgctgtggcggggg                                <  1:15426573‑M1/4‑1 (MQ=255)
  agttcgcgataactttcatactgctgtggcggggg                                <  1:13597784‑M1/4‑1 (MQ=255)
  acttcaaaacgctcgcccatcagcaccggcagggg                                >  1:14313660‑M2/33‑35 (MQ=255)
   tGCCAGGTCCGACCGGAGCAGGCTGCGGCAggggg                               <  1:6363807/35‑1 (MQ=255)
   tGCCAGGTCCGACCGGAGCAGGCTGCGGCAggggg                               >  1:11344249/1‑35 (MQ=255)
   tGCCAGGTCCGACCGGAGCAGGCTGCGGCAcgggg                               >  1:4811569/1‑35 (MQ=255)
   cttcaaaacgctcgcccatcagcaccggcaggggg                               >  1:9861377‑M2/32‑35 (MQ=255)
   cttcaaaacgctcgcccatcagcaccggcaggggg                               >  1:20161530‑M2/32‑35 (MQ=255)
   agcaccagttttccataaactgactCGGCAggggg                               <  1:8467093‑M1/10‑1 (MQ=255)
    ttcgcgataactttcatactgctgtggcggggggg                              <  1:14931248‑M1/6‑1 (MQ=255)
    ttcgcgataactttcatactgctgtggcggggggg                              <  1:11627311‑M1/6‑1 (MQ=255)
    ttcgcgataactttcatactgctgtggcgggaggg                              <  1:7637761‑M1/6‑1 (MQ=255)
    ttcaaaacgctcgcccatcagcaccggcagggggg                              >  1:10223976‑M2/31‑35 (MQ=255)
    ttcaaaacgctcgcccatcagcaccggcagggggg                              >  1:18930136‑M2/31‑35 (MQ=255)
    gcaccagttttccataaactgactCGGCAgggggg                              <  1:2716381‑M1/11‑1 (MQ=255)
    gcaccagttttccataaactgactCGGCAgggggg                              <  1:754006‑M1/11‑1 (MQ=255)
    gCCAGGTCCGACCGGAGCAGGCTGCGGCAgggggg                              >  1:16848548/1‑35 (MQ=255)
    gCCAGGTCCGACCGGAGCAGGCTGCGGCAgggggg                              <  1:13281633/35‑1 (MQ=255)
     tcaaaacgctcgcccatcagcaccggcaggggggg                             >  1:5490678‑M2/30‑35 (MQ=255)
     ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg                             <  1:16468888/35‑1 (MQ=255)
     ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg                             >  1:8298771/1‑35 (MQ=255)
     caccagttttccataaactgactCGgcaggggtgg                             <  1:14999080‑M1/12‑4 (MQ=255)
     caccagttttccataaactgactCGGCAggggggg                             <  1:11749451‑M1/12‑1 (MQ=255)
     caccagttttccataaactgactCGGCAggggggg                             <  1:3555004‑M1/12‑1 (MQ=255)
      cgcgataactttcatactgctgtggcgGGGGGGgc                            <  1:11827569‑M1/8‑1 (MQ=255)
      cAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgc                            <  1:9004347/35‑1 (MQ=255)
      cAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgc                            <  1:5718092/35‑1 (MQ=255)
      accagttttccataaactgactCGGCagggggggg                            <  1:15511621‑M1/13‑2 (MQ=255)
      accagttttccataaactgactCGGCAGGGGGGgc                            <  1:17329054‑M1/13‑1 (MQ=255)
      accagttttccataaactgactCGGCAGGGGGGgc                            <  1:764330‑M1/13‑1 (MQ=255)
       aaaacgctcgcccatcagcaccggcagGGGGggca                           >  1:3211972‑M2/28‑34 (MQ=255)
       aaaacgctcgcccatcagcaccggcagGGGGCgcg                           >  1:6676112‑M2/28‑35 (MQ=255)
       aGGTCCGACCGGAGCAGGCTGCGGCCggggggggg                           >  1:3236639/1‑33 (MQ=37)
       aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcg                           <  1:13779952/35‑1 (MQ=255)
       aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcg                           >  1:13964604/1‑35 (MQ=255)
       aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcg                           <  1:16851534/35‑1 (MQ=255)
       aGGTCCGACCCGAGCAGGCTGCGGCAGGGGGGgcg                           >  1:14697133/1‑35 (MQ=255)
        ggTCCGACCGGAGCAGGCTGCGGCAGGGGGGgggc                          >  1:14932605/1‑35 (MQ=255)
        cgataactttcatactgctgtggcggggggggacc                          <  1:17152807‑M1/10‑4 (MQ=255)
        cgataactttcatactgctgtggcgGGGGgggctc                          <  1:19680195‑M1/10‑3 (MQ=255)
        aaacgctcgcccatcagcaccggcagGGGGGgggc                          >  1:10630125‑M2/27‑35 (MQ=255)
         gataactttcatactgctgtggcgGGGggggccct                         <  1:8476097‑M1/11‑4 (MQ=255)
         gTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCt                         <  1:8089477/35‑1 (MQ=255)
         gTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCt                         <  1:9285842/35‑1 (MQ=255)
         aacgctcgcccatcagcaccggcagGGGGggggcg                         >  1:2353287‑M2/26‑34 (MQ=255)
          tCCGACCGGAGCAGGCTGCGGCAGGGGGGgggcct                        >  1:11549064/1‑33 (MQ=37)
          tCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCtt                        <  1:14264973/35‑1 (MQ=255)
           ttttccataaactgactCGGCAGGGggggcgcgtc                       <  1:1623841‑M1/18‑4 (MQ=255)
           ttttccataaactgactCGGCAGGGGGGGCgctcc                       <  1:13773806‑M1/18‑3 (MQ=255)
           cgctcgcccatcagcaccggcagGGggggcgcctg                       >  1:10197234‑M2/24‑32 (MQ=255)
           ccGACCGGAGCAGGCTGCGGCAGGGGGGGGGGttt                       >  1:13264988/1‑35 (MQ=37)
           ccGACCGGAGCAGGCTGCGGCAGGGGGGGGGCttt                       >  1:16279467/1‑35 (MQ=255)
            cGACCGGAGCAGGCTGCGGCAGGGGGGGGGCcttt                      >  1:4693626/1‑35 (MQ=37)
             gACCGGAGCAGGCTGCGGCAGGGGGGGGGCttttt                     >  1:13302920/1‑34 (MQ=255)
              aCCGGAGCAGGCTGCGGCAGGGGGGGGGCcttttt                    >  1:12804149/1‑33 (MQ=25)
              aCCGGAGCAGGCTGCGGCAGGGGGGGCGCTTTTcc                    <  1:37706/35‑1 (MQ=255)
              aCCGGAGCAGGCTGAGGCAGGGGGGGCGCTTTTcc                    <  1:3621076/35‑1 (MQ=255)
               ccGGAGCAGGCTGCGGCAGGGGGGGGGGttttttt                   >  1:19698810/1‑32 (MQ=25)
                  gAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTc                <  1:4466059/35‑1 (MQ=255)
                  gAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTc                <  1:442721/35‑1 (MQ=255)
                  gAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTc                <  1:19368781/35‑1 (MQ=255)
                   aggaGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCa               <  1:17838833/32‑1 (MQ=255)
                   aGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCa               <  1:4510337/35‑1 (MQ=255)
                    gCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCAc              <  1:8303146/35‑1 (MQ=255)
                    gCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCAc              <  1:1942769/35‑1 (MQ=255)
                    gCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCAc              <  1:2827788/35‑1 (MQ=255)
                      aGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCAccc            <  1:4926932/35‑1 (MQ=255)
                       ggCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCt           <  1:14436043/35‑1 (MQ=255)
                       ggCTGCGGCAGGGGGGGCGCTTTTCACCTCACCCt           <  1:9569212/35‑1 (MQ=255)
                        gCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTa          <  1:3460310/35‑1 (MQ=255)
                        gCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTa          <  1:3315506/35‑1 (MQ=255)
                        gCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTa          <  1:2363207/35‑1 (MQ=255)
                         cTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTaa         <  1:7972947/35‑1 (MQ=255)
                           gCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAAcc       <  1:15801754/35‑1 (MQ=255)
                           gCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAAcc       <  1:8836544/35‑1 (MQ=255)
                            CGGCAGGGGGGGCGCTTTTCCCCTCACCCTAAccc      >  1:6186598‑M1/1‑35 (MQ=255)
                             GGCAGGGGGGGCGCTTTTCCCCTCACCCTAACCct     >  1:12689574‑M1/1‑35 (MQ=255)
                             GGCAGGGGGGGCGCTTTTCCCCTCACCCTAACCct     >  1:10753721‑M1/1‑35 (MQ=255)
                              GCAGGGGGGGCGCTTTTCCCCTCACCCTAACCctc    >  1:5155066‑M1/1‑35 (MQ=255)
                              GCAGGGGGGGCGCTTTTCCCCTCACCCTAACCctc    >  1:16598585‑M1/1‑35 (MQ=255)
                              GCAGGGGGGGCGCTTTTCCCCTCACCCTAACCctc    >  1:18316882‑M1/1‑35 (MQ=255)
                               CAGGGGGGGCGCTTTTCCCCTCACCCTAACCctct   >  1:7322736‑M1/1‑35 (MQ=255)
                               CAGGGGGGGCGCTTTTCCCCTCACCCTAACCctct   >  1:4392314‑M1/1‑35 (MQ=255)
                                AGGGGGGGCGCTTTTCCCCTCACCCTAACCCtctc  >  1:16149026‑M1/1‑35 (MQ=255)
                                AGGGGGGGCGCTTTTCCCCTCACCCTAACCCtctc  >  1:10857580‑M1/1‑35 (MQ=255)
                                  |                                
AGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAACCCTCTC  >  REL606/1349526‑1349592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.