New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 312869 =100 (0.970)13 (0.150) 6/40 NT 13.5% coding (56/951 nt) yahI predicted carbamate kinase‑like protein
?REL606 4351443 = 83 (0.970)intergenic (+51/‑87) groEL/yjeI chaperonin GroEL/hypothetical protein

TTTCACCGCCTCCGCCTGATGCTCAATCGACTGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/312906‑312869
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGA  >  REL606/4351443‑4351476
                                                                        
TTTCACCGCCTCCGCCTGATGCTCAATCGACTGGC                                       >  1:5467892/1‑35
 TTCACCGCCTCCGCCTGATGCTCAATCGACTGGCT                                      >  1:20533452/1‑35
 TTCACCGCCTCCGCCTGATGCTCAATCGACTGGCT                                      >  1:2080002/1‑35
 TTCACCGCCTCCGCCTGATGCTCAATCGACTGGCT                                      >  1:4688636/1‑35
 TTCACCGCCTCCGCCTGATGCTCAATCGACTGGCT                                      >  1:13971382/1‑35
 TTCACCGCCTCCGCCTGATGCTCAATCGACTGGCT                                      >  1:5588196/1‑35
  cccCCGCCTCCGCCTGATGCTCAATCGACTGGCTG                                     <  1:1478514/32‑1
  cccCCGCCTCCGCCTGATGCTCAATCGACTGGCTG                                     <  1:15975938/32‑1
  cccCCGCCTCCGCCTGATGCTCAATCGACTGGCTG                                     <  1:3170196/32‑1
  TCACCGCCTCCGCCTGATGCTCAATCGACTGGCTG                                     >  1:479461/1‑35
  TCACCGCCTCCGCCTGATGCTCAATCGACTGGCTG                                     >  1:16971663/1‑35
  TCACCGCCTCCGCCTGATGCTCAATCGACTGGCTG                                     >  1:9685754/1‑35
  TCACCGCCTCCGCCTGATGCTCAATCGACTGGATG                                     >  1:14645042/1‑35
   ccCCGCCTCCGCCTGATGCTCAATCGACTGGCTGG                                    <  1:13167774/33‑1
   ccCCGCCTCCGCCTGATGCTCAATCGACTGGCTGG                                    <  1:8915560/33‑1
   CACCGCCTCCGCCTGATGCTCAATCGACTGGCTGG                                    >  1:6595998/1‑35
   CACCGCCTCCGCCTGATGCTCAATCGACTGGCTGG                                    >  1:2757921/1‑35
   CACCGCCTCCGCCTGATGCTCAATCGACTGGCTGG                                    >  1:10564140/1‑35
    ACCGCCTCCGCCTGATGCTCAATCGACTGGCTGGG                                   >  1:18224127/1‑35
    ACCGCCTCCGCCTGATGCTCAATCGACTGGCTGGG                                   >  1:17627538/1‑35
    ACCGCCTCCGCCTGATGCTCAATCGACTGGCTGGG                                   >  1:1079149/1‑35
      CGCCTCCGCCTGATGCTCAATCGACTGGCTGGGGG                                 >  1:2324386/1‑35
      CGCCTCCGCCTGATGCTCAATCGACTGGCTGGGGG                                 >  1:5882290/1‑35
       GCCTCCGCCTGATGCTCAATCGACTGGCTGGGGGT                                >  1:1979475/1‑35
       GCCTCCGCCTGATGCTCAATCGACTGGCTGGGGGT                                >  1:4612409/1‑35
         CTCCGCCTGATGCTCAATCGACTGGCTGGGGTTTT                              >  1:10763399/1‑35
         CTCCGCCTGATGCTCAATCGACTGGCTGGGGGTTT                              >  1:6734916/1‑35
         CTCCGCCTGATGCTCAATCGACTGGCTGGGGGTTT                              >  1:7393671/1‑35
         CTCCGCCTGATGCTCAATCGACTGGCTGGGGGTTT                              >  1:10751977/1‑35
          TCCGCCTGATGCTCAATCGACTGGCTGGGGGTATT                             >  1:3744699/1‑35
          TCCGCCTGATGCTCAACCGACTGGCTGGGGGTTTT                             >  1:3792629/1‑35
           CCGCCTGATGCTCAATCGACTGGCTGGGGGTTTct                            >  1:9149837/1‑33
           CCGCCTGATGCTCAATCGACTGGCTGGGGGTATTT                            >  1:3685957/1‑35
            CGCCTGATGCTCAATCGACTGGCTGGGGGTTTTTt                           >  1:18555106/1‑34
              CCTGATGCTCAATCGACTGGCTGGGGGTTTTTTTT                         >  1:14517769/1‑35
               CTGATGCTCAATCGACTGGCTGGGGGTTTTTTTTT                        >  1:2470959/1‑35
               CTGATGCTCAATCGACTGGCTGGGGGTTTTTTTTT                        >  1:7372449/1‑35
                TGATGCTCAATCGACTGGCTGGGGGTTTTTTTTTT                       >  1:8693631/1‑35
                                     GGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGA  >  1:1344165/1‑35
                                     GGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGA  >  1:14595200/1‑35
                                     GGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGA  >  1:4410676/1‑35
                                     GGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGA  <  1:3626134/35‑1
                                     GGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGA  <  1:20532346/35‑1
                                                                        
TTTCACCGCCTCCGCCTGATGCTCAATCGACTGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/312906‑312869
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAGA  >  REL606/4351443‑4351476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.