New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 842815109 (1.060)4 (0.040) 3/44 NT 4.8% intergenic (‑93/‑260) ybiF/ompX threonine and homoserine efflux system/outer membrane protein X
?REL606 3607355 = 58 (0.620)coding (503/2076 nt) yhjG predicted outer membrane biogenesis protein

Only 100 of 138 total aligned reads displayed.

GGCGATCCGCCCTTGATCGAAAAGAATATTATCCAGCCGAAACGACCATGCCGACGGCTTTGCATTCGC  >  REL606/3607321‑3607389
                                  |                                  
tgctggttgagcatttgttgaaaaaattttcccca                                    <  1:15556376‑M2/1‑1 (MQ=255)
ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa                                    <  1:7147298/35‑1 (MQ=255)
ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa                                    <  1:6883759/35‑1 (MQ=255)
ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa                                    >  1:5426605/1‑35 (MQ=255)
ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa                                    >  1:20260297/1‑35 (MQ=255)
ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa                                    <  1:1879999/35‑1 (MQ=255)
ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa                                    <  1:1483807/35‑1 (MQ=255)
ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa                                    >  1:10191313/1‑35 (MQ=255)
ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa                                    <  1:10835090/35‑1 (MQ=255)
  cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc                                  >  1:15311072/1‑35 (MQ=255)
  cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc                                  >  1:12252635/1‑35 (MQ=255)
  cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc                                  >  1:3752758/1‑35 (MQ=255)
  cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc                                  <  1:7111894/35‑1 (MQ=255)
  cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc                                  <  1:20138000/35‑1 (MQ=255)
  cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc                                  <  1:20046069/35‑1 (MQ=255)
  cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc                                  >  1:17340398/1‑35 (MQ=255)
  cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc                                  >  1:18143628/1‑35 (MQ=255)
  cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc                                  >  1:18008167/1‑35 (MQ=255)
   gATCCGCCCTTGATCGAAAAGAATATTATCCAGcc                                 >  1:12886428/1‑35 (MQ=255)
   gATCCGCCCTTGATCGAAAAGAATATTATCCAGcc                                 <  1:13579355/35‑1 (MQ=255)
   gATCCGCCCTTGATCGAAAAGAATATTATCCAGcc                                 <  1:4206321/35‑1 (MQ=255)
   gATCCGCCCTTGATCGAAAAGAATATTATCCAGcc                                 <  1:16520103/35‑1 (MQ=255)
    aTCCGCCCTTGATCGAAAAGAATATTATCCAGCCg                                >  1:1099492/1‑35 (MQ=255)
    aTCCGCCCTTGATCGAAAAGAATATTATCCAGCCg                                >  1:18698720/1‑35 (MQ=255)
    aTCCGCCCTTGATCGAAAAGAATATTATCCAGCCg                                >  1:2584628/1‑35 (MQ=255)
     tCCGCCCTTGATCGAAAAGAATATTATCCAGCCGa                               >  1:9253165/1‑35 (MQ=255)
     tCCGCCCTTGATCGAAAAGAATATTATCCAGCCGa                               >  1:12072465/1‑35 (MQ=255)
     tCCGCCCTTGATCGAAAAGAATATTATCCAGCCGa                               >  1:15666278/1‑35 (MQ=255)
         cccTTGATCGAAAAGAATATTATCCAGCCGAAACg                           >  1:18200755/1‑35 (MQ=255)
          ccTTGATCGAAAAGAATATTATCCAGCCGAAACGa                          >  1:6670915/1‑35 (MQ=255)
           cTTGATCGAAAAGAATATTATCCAGCCGAAACGAc                         >  1:5869041/1‑35 (MQ=255)
             tGATCGAAAAGAATATTATCCAGCCGAAACGACCa                       >  1:4826872/1‑35 (MQ=255)
              gttCGAAAAGAATATTATCCAGCCGAAACGACCAt                      >  1:7528222/3‑35 (MQ=255)
              gATCGAAAAGAATATTATCCAGCCGAAACGACCAt                      >  1:8343393/1‑35 (MQ=255)
              gATCAAAAAAAATATTACCCAGCCGAAACGACAAt                      <  1:7694041/35‑1 (MQ=16)
               aTCGAAAAGAATATTATCCAGCCGAAACGACCATg                     >  1:4620095/1‑35 (MQ=255)
               aTCGAAAAGAATATTATCCAGCCGAAACGACCATg                     >  1:16379437/1‑35 (MQ=255)
                tCGAAAAGAATATTATCCAGCCGAAACGACCATGc                    >  1:589573/1‑35 (MQ=255)
                tCGAAAAGAATATTATCCAGCCGAAACGACCATGc                    >  1:6355489/1‑35 (MQ=255)
                 cGAAAAGAATATTATCCAGCCGAAACGACCATGcc                   >  1:12612067/1‑35 (MQ=255)
                 cGAAAAGAATATTATCCAGCCGAAACGACCATGcc                   >  1:14022250/1‑35 (MQ=255)
                  gAAAAGAATATTATCCAGCCGAAACGACCATGCCg                  >  1:19154766/1‑35 (MQ=255)
                  gAAAAGAATATTATCCAGCCGAAACGACCATGCCg                  >  1:15129351/1‑35 (MQ=255)
                  aaaaaaaattttccccAGCCGAAACGACCATGCCg                  <  1:4656822‑M2/19‑1 (MQ=255)
                   aaaaGAATATTATCCAGCCGAAACGACCATGCCGa                 >  1:16233631/1‑35 (MQ=255)
                    aaaGAATATTATCCAGCCGAAACGACCATGCCGAc                >  1:4808342/1‑35 (MQ=255)
                    aaaGAATATTATCCAGCCGAAACGACCATGCCGAc                >  1:7024030/1‑35 (MQ=255)
                    aaaGAATATTATCCAGCCGAAACGACCATGCCGAc                >  1:9129218/1‑35 (MQ=255)
                     aaaaattttccccAGCCGAAACGACCATGCCGACg               <  1:6039924‑M2/22‑1 (MQ=255)
                     aaGAATATTATCCAGCCGACACGACCATGCCGACg               >  1:5602138/1‑35 (MQ=255)
                     aaGAATATTATCCAGCCGAAACGACCATGCCGACg               >  1:14407727/1‑35 (MQ=255)
                     aaGAATATTATCCAGCCGAAACGACCATGCCGACg               >  1:11426443/1‑35 (MQ=255)
                     aaGAATATTATCCAGCCGAAACGACCATGCCGACg               >  1:10266753/1‑35 (MQ=255)
                      aGAATATTATCCAGCCGAAACGACCATGCCGActg              >  1:19484287/1‑33 (MQ=255)
                      aGAATATTATCCAGCCGAAACGACCATGCCGACgg              >  1:9392500/1‑35 (MQ=255)
                      aGAATATTATCCAGCCGAAACGACCATGCCGACgg              >  1:16328216/1‑35 (MQ=255)
                      aGAATATTATCCAGCCGAAACGACCATGCCGACgg              >  1:15039175/1‑35 (MQ=255)
                       gAATATTATCCAGCCGAAACGACCATGCCGACGGc             >  1:2715356/1‑35 (MQ=255)
                        aaTATTATCCAGCCGAAACGACCATGCCGACTGCt            >  1:3566469/1‑35 (MQ=255)
                        aaTATTATCCAGCCGAAACGACCATGCCGACGGCt            >  1:6733370/1‑35 (MQ=255)
                        aaTATTATCCAGCCGAAACGACCATGCCGACGGCt            >  1:10272617/1‑35 (MQ=255)
                        aaTATTATCCAGCCGAAACGACCATGCCGACGGCt            >  1:14242531/1‑35 (MQ=255)
                        aaTATTATCCAGCCGAAACGACCATGCCGACGGCt            >  1:15470974/1‑35 (MQ=255)
                         atatTATCCAGCCGAAACGACCATGCCGACGGCtt           >  1:5728277/1‑35 (MQ=255)
                         atatTATCCAGCCGAAACGACCATGCCGACGGCtt           >  1:7562227/1‑35 (MQ=255)
                          ttttccccAGCCGAAACGACCATGCCGACGGCttt          <  1:9140108‑M2/27‑1 (MQ=255)
                          tattccccAGCCGAAACGACCATGCCGACGGCttt          <  1:10969573‑M2/27‑1 (MQ=255)
                          tattatCCAGCCGAAACGACCATGCCGACGGCttt          >  1:3835764/1‑35 (MQ=255)
                          tattatCCAGCCGAAACGACCATGCCGACGGCttt          >  1:12830893/1‑35 (MQ=255)
                           attatCCAGCCGAAACGACCATGCCGACGGCTTTg         >  1:13468403/1‑35 (MQ=255)
                           attatCCAGCCGAAACGACCATGCCGACGGCTTTg         >  1:5933516/1‑35 (MQ=255)
                           attatCCAGCCGAAACGACCATGCCGACGGCTTTg         >  1:3202844/1‑35 (MQ=255)
                            ttatCCAGCCGAAACGACCATGCCGACGGCTTTGc        >  1:4485184/1‑35 (MQ=255)
                             tccccAGCCGAAACGACCATGCCGACGGCTTTGCa       <  1:3195943‑M2/30‑1 (MQ=255)
                             tatCCAGCCGAAACGACCATGCCGACGGCTTTGCa       >  1:3096649/1‑35 (MQ=255)
                             tatCCAGCCGAAACGACCATGCCGACGGCTTTGCa       >  1:19243602/1‑35 (MQ=255)
                              ccccAGCCGAAACGACCATGCCGACGGCTTTGCAt      <  1:6014140‑M2/31‑1 (MQ=255)
                              ccccAGCCGAAACGACCATGCCGACGGCTTTGCAt      <  1:3606323‑M2/31‑1 (MQ=255)
                              ccccAGCCGAAACGACCATGCCGACGGCTTTGCAt      <  1:8831100‑M2/31‑1 (MQ=255)
                              ccccACCCGAAACGACCATGCCGACGGCTTTGCAt      <  1:5470849‑M2/31‑1 (MQ=255)
                              atCCAGCCGAAACGACCATGCCGACGGCTTTGCAt      >  1:9152932/1‑35 (MQ=255)
                              atCCAGCCGAAACGACCATGCCGACGGCTTTGCAt      >  1:6894548/1‑35 (MQ=255)
                              atCCAGCCGAAACGACCATGCCGACGGCTTTGCAt      >  1:13721630/1‑35 (MQ=255)
                               tCCAGCCGAAACGACCATGCCGACGGCTCTGCAtt     >  1:862062/1‑35 (MQ=255)
                               cccAGCCGAAACGACCATGCCGACGGCTTTGCAtt     <  1:5656022‑M2/32‑1 (MQ=255)
                               cccACCCGAAACGACCATGCCGACGGCTTTGCAtt     <  1:8395603‑M2/32‑1 (MQ=255)
                                ccAGCCGAAACGACCATGCCGACGGCTTTGCATTc    >  1:15770450‑M2/3‑35 (MQ=255)
                                ccAGCCGAAACGACCATGCCGACGGCTTTGCATTc    <  1:15140136‑M2/33‑1 (MQ=255)
                                ccAGCCGAAACGACCATGCCGACGGCTTTGCATTc    >  1:12172021‑M2/3‑35 (MQ=255)
                                ccAGCCGAAACGACCATGCCGACGGCTTTGCATTc    >  1:4512440‑M2/3‑35 (MQ=255)
                                ccAGCCGAAACGACCATGCCGACGGCTTTGCATTc    >  1:13378292‑M2/3‑35 (MQ=255)
                                ccACCCGAAACGACCATGCCGACGGCTTTGCATTc    <  1:4286379‑M2/33‑1 (MQ=255)
                                 cAGCCGAAACGACCATGCCGACGGCTTTGCATTCg   >  1:16024010‑M2/2‑35 (MQ=255)
                                 cAGCCGAAACGACCATGCCGACGGCTTTGCATTCg   <  1:16149704‑M2/34‑1 (MQ=255)
                                  aGCCGAACCGACCATGCCGACGGCTTTGCATTcgc  <  1:17672350/35‑1 (MQ=255)
                                  aGCCGAAACGACCATGCCGACGGCTTTGCCTTcgc  >  1:889928/1‑35 (MQ=255)
                                  aGCCGAAACGACCATGCCGACGGCTTTGCATTcgc  >  1:11635802/1‑35 (MQ=255)
                                  aGCCGAAACGACCATGCCGACGGCTTTGCATTcgc  <  1:13724836/35‑1 (MQ=255)
                                  aGCCGAAACGACCATGCCGACGGCTTTGCATTcgc  >  1:14011579/1‑35 (MQ=255)
                                  aGCCAAAACGACCATGCCGACGGCTTTGCATTcgc  <  1:5714144/35‑1 (MQ=255)
                                  |                                  
GGCGATCCGCCCTTGATCGAAAAGAATATTATCCAGCCGAAACGACCATGCCGACGGCTTTGCATTCGC  >  REL606/3607321‑3607389

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.