New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 219525778 (0.760)26 (0.260) 7/46 NT 26.7% coding (110/837 nt) yeiG predicted esterase
?REL606 2252861 = 71 (0.690)coding (142/264 nt) napD assembly protein for periplasmic nitrate reductase

CTTTCTCCCCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2195243‑2195257
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCACCACAATCAACTGACCGCTCGGCGCGTCGCT  >  REL606/2252861‑2252894
               |                                  
ctcTCTCCCCCCCCCCCCACCACAATCAACTGACC                 <  1:14276249/32‑1
 tcTCTCCCCCCCCCCCCACCACAATCAACTGACCG                <  1:6267970/33‑1
 TTTCTCCCCCCCCCCCCACCACAATCAACTGACCG                <  1:1985292/35‑1
  tcCTCCCCCCCCCCCCACCACAATCAACTGACCGC               <  1:12151603/33‑1
  TTCTCCCCCCCCCCCCACCACAATCAACTGACCGC               <  1:3542025/35‑1
    ccCCCCCCCCCCCCACCACAATCAACTGACCGCTC             <  1:12396703/33‑1
    ccCCCCCCCCCCCCACCACAATCAACTGACCGCTC             <  1:12831873/33‑1
    CTCCCCCCCCCCCCACCACAATCAACTGACCGCTC             <  1:6282521/35‑1
      aCCCCCGCCCCCACCACAATCAACTGACCGCTCGG           <  1:2330272/34‑1
      CCCCCCCCCCCCACCACAATCAACTGACCGCTCGG           <  1:10606684/35‑1
      CCCCCCCCCCCCACCACAATCAACTGACCGCTCGG           <  1:11059529/35‑1
      CCCCCCCCCCCCACCACAATCAACTGACCGCTCGG           <  1:11701133/35‑1
       CCCCCCCCCCCACCACAATCAACTGACCGCTCGGC          <  1:2595159/35‑1
       CCCCCCCCCCCACCACAATCAACTGACCGCTCGGC          <  1:19050041/35‑1
       CCCCCCCCCCCACCACAATCAACTGACCGCTCGGC          <  1:15402944/35‑1
       CCCCCCCCCCCACCACAATCAACTGACCGCTCGGC          <  1:6843107/35‑1
       CCCCCCCCCCCACCACAATCAACTGACCGCTCGGC          <  1:8248413/35‑1
       CCCCCCCCCCCACCACAATCAACTGACCGCTCGGC          <  1:9862403/35‑1
       CCCCCCCCCCCACCACAATCAACTGACCGCTCGGC          <  1:9962475/35‑1
        CCCCCCCCCCACCACAATCAACTGACCGCTCGGCG         <  1:16557702/35‑1
        CCCCCCCCCCACCACAATCAACTGACCGCTCGGCG         <  1:1830579/35‑1
        CCCCCCCCCCACCACAATCAACTGACCGCTCGGCG         <  1:13177549/35‑1
        CCCCCCCCCCACCACAATCAACTGACCGCTCGGCG         <  1:13070144/35‑1
        CCCCCCCCCCACCACAATCAACTGACCGCTCAGCG         <  1:4102515/35‑1
         gCCCCCCCCACCACAATCAACTGACCGCTCGGCGC        <  1:5362724/34‑1
         CCCCCCCCCACCACAATCAACTGACCGCTCGGCGC        <  1:9968258/35‑1
         CCCCCCCCCACCACAATCAACTGACCGCTCGGCGC        <  1:19771894/35‑1
          gCCCCCCCACCACAATCAACTGACCGCTCGGCGCG       <  1:3415487/34‑1
          CCCCCCCCACCACAATCAACTGACCGCTCGGCGCG       <  1:2511587/35‑1
            CCCCCCCCCACAATCAACTGACCGCTCGGCGCGTC     <  1:1492124/35‑1
            CCCCCCACCACAATCAACTGACCGCTCGGCGCGTC     <  1:10066521/35‑1
              CCCCACCACAATCAACTGACCGCTCGGCGCGTCGC   <  1:1858518/35‑1
              CCCCACCACAATCAACTGACCGCTCGGCGAGTCGC   <  1:1550896/35‑1
               CCCACCACAATCAACTGACCGCTCGGCGCGTCGCT  <  1:7002787/35‑1
               CCCACCACAATCAACTGACCGCTCGGCGCGTCGCT  <  1:11997639/35‑1
               CCCACCACAATCAACTGACCGCTCGGCGCGTCGCT  <  1:9082136/35‑1
               CCCACCACAATCAACTGACCGCTCGGCGCGTCGCT  <  1:11559054/35‑1
               CCCACCACAATCAACTGACCGCTCGGCGCGTCGCT  <  1:10133485/35‑1
               |                                  
CTTTCTCCCCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2195243‑2195257
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCACCACAATCAACTGACCGCTCGGCGCGTCGCT  >  REL606/2252861‑2252894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.