New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 140702 =57 (0.550)10 (0.130) 3/36 NT 18.6% coding (817/1551 nt) cueO multicopper oxidase (laccase)
?REL606 1349560 = 45 (0.580)intergenic (‑152/+216) fabI/ycjD enoyl‑(acyl carrier protein) reductase/hypothetical protein

Only 100 of 113 total aligned reads displayed.

TGGTCTGCTACCTGAACCAGTGAAGGTGAGCGAACTGCCGGTGCTGATGGGCGAGCGTTTTGAAGTGCT  >  REL606/140668‑140736
                                  |                                  
tggtCTGCTACCTGAACCAGTGAAGGTGAGCGAAc                                    >  1:2526174/1‑35 (MQ=255)
tggtCTGCTACCTGAACCAGTGAAGGTGAGCGAAc                                    <  1:13938575/35‑1 (MQ=255)
tggtCTGCTACCTGAACCAGTGAAGGTGAGCGAAc                                    <  1:17249287/35‑1 (MQ=255)
tggtCTGCTACCTGAACCAGTGAAGGTGAGCGAAc                                    >  1:5877232/1‑35 (MQ=255)
tggtCTGCTACCTGAACCAGTGAAGGTGAGCGAAc                                    <  1:11427608/35‑1 (MQ=255)
tggtCTGCTACCTGAACCAGTGAAGGGGAGCGAAc                                    >  1:11595492/1‑35 (MQ=255)
 ggtCTGCTACCTGAACCAGTGAAGGTGAGCGAACt                                   >  1:5213665/1‑35 (MQ=255)
 ggtCTGCTACCTGAACCAGTGAAGGTGAGCGAACt                                   >  1:526899/1‑35 (MQ=255)
 ggtCTGCTACCTGAACCAGTGAAGGTGAGCGAACt                                   <  1:8333110/35‑1 (MQ=255)
  gtCTGCTACCTGAACCAGTGAAGGTGAGCGAACTg                                  <  1:12106854/35‑1 (MQ=255)
  gtCTGCTACCTGAACCAGTGAAGGTGAGCGAACTg                                  >  1:723391/1‑35 (MQ=255)
  gtCTGCTACCTGAACCAGTGAAGGGGAGCGAACTg                                  >  1:5228988/1‑35 (MQ=255)
   tCTGCTACCTGAACCAGTGAAGGTGAGCGAACTGc                                 <  1:4725611/35‑1 (MQ=255)
   tCTGCTACCTGAACCAGTGAAGGTGAGCGAACTGc                                 <  1:19015728/35‑1 (MQ=255)
   tCTGCTACCTGAACCAGTGAAGGTGAGCGAACTGc                                 <  1:3350459/35‑1 (MQ=255)
     tGCTACCTGAACCAGTGAAGGTGAGCGAACTGCCg                               >  1:19372742/1‑35 (MQ=255)
     tGCTACCTGAACCAGTGAAGGTGAGCGAACTGCCg                               >  1:8352158/1‑35 (MQ=255)
     tGCTACCTGAACCAGTGAAGGTGAGCGAACTGCCg                               >  1:16319012/1‑35 (MQ=255)
      gCTACCTGAACCAGTGAAGGTGAGCGACCTGCCgg                              <  1:16316768/35‑1 (MQ=255)
       cTACCTGAACCAGTGAAGGTGAGCGAACTGCCggg                             >  1:795394/1‑34 (MQ=255)
       cTACCTGAACCAGTGAAGGTGAGCGAACTGCCGGt                             >  1:17965600/1‑35 (MQ=255)
       cTACCTGAACCAGTGAAGGTGAGCGAACTGCCGGt                             >  1:490778/1‑35 (MQ=255)
       cTACCTGAACCAGTGAAGGTGAGCGAACTGCCGGt                             >  1:5985232/1‑35 (MQ=255)
         aCCTGAACCAGTGAAGGTGAGCGAACTGCCGGTGc                           >  1:19492771/1‑35 (MQ=255)
         aCCTGAACCAGTGAAGGTGAGCGAACTGCCGGTGc                           >  1:6564722/1‑35 (MQ=255)
         aCCTGAACCAGTGAAGGTGAGCGAACTGCCGGTGc                           >  1:94912/1‑35 (MQ=255)
          ccTGAACCAGTGAAGGTGAGCGAACTGCCGGTGCt                          >  1:5782086/1‑35 (MQ=255)
          ccTGAACCAGTGAAGGTGAGCGAACTGCCGGTGCt                          >  1:8035873/1‑35 (MQ=255)
          ccTGAACCAGTGAAGGTGAGCGAACCGCCGGTGCt                          >  1:5727851/1‑35 (MQ=255)
            tGAACCAGTGAAGGTGAGCTAACTGCCGGTGCTGa                        >  1:7893618/1‑35 (MQ=255)
            tGAACCAGTGAAGGTGAGCGAACTGCCGGTGCTGa                        >  1:19021677/1‑35 (MQ=255)
            tGAACCAGTGAAGGTGAGCGAACTGCCGGTGCTGa                        >  1:11951913/1‑35 (MQ=255)
             gAACCAGTGAAGGTGAGCGAACTGCCGGTGCTGAt                       >  1:2926427/1‑35 (MQ=255)
             gAACCAGTGAAGGTGAGCGAACTGCCGGTGCTGAt                       >  1:10447445/1‑35 (MQ=255)
              aaCCAGTGAATGTGAGCGAACTGCCGGGGCTGATg                      >  1:4691512/1‑35 (MQ=37)
              aaCCAGTGAAGGTGAGCGAACTGCCGGTGCTGATg                      >  1:17446285/1‑35 (MQ=255)
              aaCCAGTGAAGGTGAGCGAACTGCCGGTGCTGATg                      >  1:16836395/1‑35 (MQ=255)
                ccAGTGAATGTGAGCGAACTGCCGGTGCTCATggg                    >  1:10628347/1‑35 (MQ=25)
                ccAGTGAAGGTGAGCGAACTGCCGGTGCTGATggg                    >  1:9280222/1‑35 (MQ=255)
                ccAGTGAAGGTGAGCGAACTGCCGGTGCTGATggg                    >  1:16595118/1‑35 (MQ=255)
                 cAGTGAAGGTTAGCGAACTGCCGGGGCTGATgggg                   >  1:4283193/1‑34 (MQ=37)
                 cAGTGAAGGTGAGCGAACTGCCGGTGCTGATGGGc                   >  1:5259570/1‑35 (MQ=255)
                 cAGTGAAGGTGAGCGAACTGCCGGTGCTGATGGGc                   >  1:12471207/1‑35 (MQ=255)
                  aGTGAAGGTGAGCGAACTGCAGGTGCTGATGGGCg                  <  1:5519745/35‑1 (MQ=255)
                   gTGAAGGTGAGCTAACTGCCGGTGCTGATGGGCGa                 >  1:1097700/1‑35 (MQ=255)
                   gTGAAGGTGAGCGAACTGCCGGTGCTGATGGGCGa                 >  1:17074435/1‑35 (MQ=255)
                   gTGAAGGTGAGCGAACTGCCGGTGCTGATGGGCGa                 >  1:8552119/1‑35 (MQ=255)
                    tGAAGGTGAGCGAACTGCCGGTGCTGATGGGCGAg                >  1:4669734/1‑35 (MQ=255)
                    tGAAGGTGAGCGAACTGCCGGTGCTGATGGGCGAg                >  1:14816816/1‑35 (MQ=255)
                     gAAGGTGAGCGAACTGCCGGTGCTGATGGGCGAGc               >  1:1749086/1‑35 (MQ=255)
                      caggcgccccccCTGCCGGTGCTGATGGGCGAGCg              >  1:10197234‑M1/13‑35 (MQ=255)
                      aaGGTGAGCGAACTGCCGGTGCTGATGGGCGAggg              >  1:9617762/1‑33 (MQ=255)
                      aaGGTGAGCGAACTGCCGGTGCTGATGGGCGAGCg              >  1:4124430/1‑35 (MQ=255)
                      aaGGTGAGCGAACTGCCGGTGCTGATGGGCGAGCg              >  1:11913071/1‑35 (MQ=255)
                       aGGTGAGCGAACTGCCGGTGCTGATGTGCGAGCGt             >  1:18252660/1‑35 (MQ=255)
                       aGGTGAGCGAACTGCCGGTGCTGATGGGCGAGCGt             >  1:6862378/1‑35 (MQ=255)
                       aGGTGAGCGAACTGCCGGTGCTGATGGGCGAGCGt             >  1:13045824/1‑35 (MQ=255)
                       aGGTGAGCGAACTGCCGGTGCTGATGGGCGAGCGt             >  1:19899784/1‑35 (MQ=255)
                        cgccccccccCTGCCGGTGCTGATGGGCGAGCGtt            >  1:2353287‑M1/11‑35 (MQ=255)
                         gcgccccccCTGCCGGTGCTGATGGGCGAGCGttt           >  1:6584695‑M1/10‑35 (MQ=255)
                         gccccccccCTGCCGGTGCTGATGGGCGAGCGttt           >  1:10630125‑M1/10‑35 (MQ=255)
                         gTGAGCGAACTGCCGGTGCTGATGGGCGAGCGttt           >  1:10795679/1‑35 (MQ=255)
                         gTGAGCGAACTGCAGGTGCTGATGGGCGAGCGttt           <  1:620248/35‑1 (MQ=255)
                          tgccccccCTGCCGGTGCTGATGGGCGAGCGtttt          >  1:3211972‑M1/9‑35 (MQ=255)
                          tGAGCGAACTGCCGGTGCTGATGGGCGAGCGtttt          >  1:8456143/1‑35 (MQ=255)
                          tGAGCGAACTGCCGGTGCTGATGGGCGAGCGtttt          >  1:16384661/1‑35 (MQ=255)
                          cgcgccccCTGCCGGTGCTGATGGGCGAGCGtttt          >  1:6676112‑M1/9‑35 (MQ=255)
                          cgccccccCTGCCGGTGCTGATGGGCGAGCGtttt          >  1:2646995‑M1/9‑35 (MQ=255)
                          ccccccccCTGCCGGTGCTGATGGGCGAGCGtttt          >  1:12848895‑M1/9‑35 (MQ=255)
                          ccccccccCTGCCGGTGCTGATGGGCGAGCGtttt          >  1:2862721‑M1/9‑35 (MQ=255)
                          cagcccccCTGCCGGTGCTGATGGGCGAGCGtttt          >  1:20277772‑M1/9‑35 (MQ=255)
                            cgccccCTGCCGGTGCTGATGGGCGAGCGTTTTGa        >  1:3262231‑M1/7‑35 (MQ=255)
                            aGCGAACTGCCGGTGCTGATGGGCGAGCGTTTTGa        >  1:8918869/1‑35 (MQ=255)
                            aGCGAACTGCCGGTGCTGATGGGCGAGCGTTTTGa        >  1:13449071/1‑35 (MQ=255)
                            aGCGAACTGCCGGTGCTGATGGGCGAGCGTTTTGa        >  1:3159006/1‑35 (MQ=255)
                             gCGAACTGCCGGTGCTGATGGGCGAGCGTTTTGaa       >  1:4066981/1‑35 (MQ=255)
                             gCGAACTGCCGGTGCTGATGGGCGAGCGTTTTGaa       >  1:9371053/1‑35 (MQ=255)
                             cccccCTGCCGGTGCTGATGGGCGAGCGTTTTGaa       >  1:18930136‑M1/6‑35 (MQ=255)
                             cccccCTGCCGGTGCTGATGGGCGAGCGTTTTGaa       >  1:10223976‑M1/6‑35 (MQ=255)
                              ccccCTGCCGGTGCTGATGGGCGAGCGTTTTGAAg      >  1:4503250‑M1/5‑35 (MQ=255)
                              ccccCTGCCGGTGCTGATGGGCGAGCGTTTTGAAg      >  1:20161530‑M1/5‑35 (MQ=255)
                              cGAACTGCCGGTGCTGATGGGCGAGCGTTTTGAAg      >  1:10107529/1‑35 (MQ=255)
                              cGAACTGCCGGTGCTGATGGGCGAGCGTTTTGAAg      >  1:15818594/1‑35 (MQ=255)
                               gAACTGCTGGTGCTGATGGGCGAGCGTTTTGAAGt     >  1:17792224/1‑35 (MQ=255)
                               gAACTGCCGGTGCTTATGGGCGAGCGTTTTGAAGt     >  1:1880210/1‑35 (MQ=255)
                               gAACTGCCGGTGCTGATGGGCGAGCGTTTTGAAGt     >  1:1076746/1‑35 (MQ=255)
                               cccCTGCCGGTGCTGATGGGCGAGCGTTTTGAAGt     >  1:14313660‑M1/4‑35 (MQ=255)
                               cccCTGCCGGTGCTGATGGGCGAGCGTTTTGAAGt     >  1:18493458‑M1/4‑35 (MQ=255)
                               cccCTGCCGGTGCTGATGGGCGAGCGTTTTGAAGt     >  1:14412090‑M1/4‑35 (MQ=255)
                                aaCTGCCGGTGCTGATGGGCTAGCGTTTTGAAGTg    >  1:7788159/1‑35 (MQ=255)
                                aaCTGCCGGTGCTGATGGGCGAGCGTTTTGAAGTg    >  1:3953880/1‑35 (MQ=255)
                                 cCTGCCGGTGCTGATGGGCGAGCGTTTTGAAGTGc   >  1:9850772‑M1/2‑35 (MQ=255)
                                 cCTGCCGGTGCTGATGGGCGAGCGTTTTGAAGTGc   >  1:2959269‑M1/2‑35 (MQ=255)
                                  CTGCCGGTGCTGATGGGCGAGCGTTTTGAAGTGCt  >  1:8150555‑M1/1‑35 (MQ=255)
                                  CTGCCGGTGCTGATGGGCGAGCGTTTTGAAGTGCt  >  1:9133907‑M1/1‑35 (MQ=255)
                                  CTGCCGGTGCTGATGGGCGAGCGTTTTGAAGTGCt  >  1:10952812‑M1/1‑35 (MQ=255)
                                  CTGCCGGTGCTGATGGGCGAGCGTTTTGAAGTGCt  <  1:10711030‑M1/35‑1 (MQ=255)
                                  CTGCCGGTGCTGATGGGCGAGCGTTTTGAAGTGCt  >  1:785301‑M1/1‑35 (MQ=255)
                                  CTGCCGGTGCTGATGGGCGAGCGTTTTGAAGTGCt  <  1:5495352‑M1/35‑1 (MQ=255)
                                  CTGCCGGTGCTGATGGGCGAGCGTTTTAAAGTGCt  >  1:9680457‑M1/1‑35 (MQ=255)
                                  |                                  
TGGTCTGCTACCTGAACCAGTGAAGGTGAGCGAACTGCCGGTGCTGATGGGCGAGCGTTTTGAAGTGCT  >  REL606/140668‑140736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.