New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 664687 | 67 (0.650) | 34 (0.380) | 20/42 | NT | 39.4% | intergenic (‑78/‑48) | gltL/insJ‑2 | ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein |
? | REL606 | 666134 = | 46 (0.510) | pseudogene (354/387 nt) | gltL | ATP‑binding protein of glutamate/aspartate transport system; b0652_2 |
TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/664651‑664687 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGT > REL606/666134‑666167 TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGT > 1:8096452/1‑35 TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGT < 1:11367462/35‑1 TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGT > 1:2698178/1‑35 TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGT < 1:17761659/35‑1 TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGT < 1:16994752/35‑1 TGGCGTGAGCAGAAAGCCAGACACGCTCCAGCAGT < 1:17875394/35‑1 GGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTT < 1:925315/35‑1 GGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTT < 1:14573383/35‑1 GGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTT > 1:14514097/1‑35 GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT < 1:9764151/35‑1 GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT > 1:6377989/1‑35 GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT > 1:6207203/1‑35 GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT < 1:6094446/35‑1 GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT > 1:5956293/1‑35 GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT < 1:2077420/35‑1 GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT > 1:19666822/1‑35 GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT > 1:13208324/1‑35 GCGTGAGCAGAAAGCCCGACACGCTCAAGCAGTTT < 1:18788940/35‑1 GTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTCA < 1:297568/35‑1 TGAGCAGAAAGCCCGACACGCTCCAGCAGTTTCAG < 1:4240718/35‑1 TGAGCAGAAAGCCCGACACGCTCCAGCAGTTTCAG < 1:14445182/35‑1 GAGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGG > 1:7643158/1‑35 GAGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGG > 1:13700005/1‑35 AGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGGG > 1:8894899/1‑35 AGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGGG > 1:8034156/1‑35 AGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGGG > 1:7444281/1‑35 AGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGGG < 1:11056321/35‑1 AGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGGG > 1:11672344/1‑35 GCAGAAAGCCCGACACGCTCCAGCAGTTTCAGGGC < 1:1798987/35‑1 CAGAAAGCCCGACACGCTCCAGCAGTTTCAGGGCT > 1:2307506/1‑35 CAGAAAGCCCGACACGCTCCAGCAGTTTCAGGGCT > 1:15354950/1‑35 CAGAAAGCCCGACACGCTCCAGCAGTTTCAGGGCT > 1:17604265/1‑35 CAGAAAGCCCGACACGCTCCAGCAGTTTCAGGGCT > 1:8904595/1‑35 AGAAAGCCCGACACGCTCCAGCAGTTTCAGGGCTT > 1:3326065/1‑35 GAAAGCCCGACACGCTCCAGCAGTTTCAGGGCTTT < 1:18055978/35‑1 AAAGCCCGACACGCTCCAGCAGTTTCAGGGCTTTT < 1:4141127/35‑1 AAAGCCCGACACGCTCCAGCAGTTTCAGGGCTTTT > 1:3194309/1‑35 AAAGCCCGACACGCTCCAGCAGTTTCAGGGCTTTT < 1:1033279/35‑1 AAGCCCGACACGCTCCAGCAGTTTCAGGGCTTTTT < 1:4286815/35‑1 AGCCCGACACGCTCCAGCAGTTTCAGTGCTTTTTC > 1:16567051/1‑35 AGCCCGACACGCTCCAGCAGTTTCAGGGCTTTTTC > 1:16035788/1‑35 AGCCCGACACGCTCCAGCAGTTTCAGGGCTTTTTC < 1:14146082/35‑1 AGCCCGACACGCTCCAGCAGTTTCAGGGCTTTTTC > 1:2946758/1‑35 GCCCGACACGCTCCAGCAGTTTCAGGGCTTTTTCA < 1:7245831/35‑1 caGACACGCTCCAGCAGTTTCAGGGCTTTTTCACG < 1:17729976/33‑1 CCGACACGCTCCAGCAGTTTCAGGGCTTTTTCACG < 1:12566898/35‑1 CCGACACGCTCCAGCAGTTTCAGGGCTTTTTCACG < 1:4427430/35‑1 CCGACACGCTCCAGAAGTTTCAGGGCTTTTTCACG < 1:6107851/35‑1 CGACACGCTCCAGCAGTTTCAGGGCTTTTTCACGA > 1:10531586/1‑35 CGACACGCTCCAGCAGTTTCAGGGCTTTTTCACGA > 1:12694022/1‑35 GACACGCTCCAGCAGTTTCAGGGCTTTTTCACGAG < 1:12512290/35‑1 GACACGCTCCAGCAGTTTCAGGGCTTTTTCACGAG < 1:6878917/35‑1 CACGCTCCAGCAGTTTCAGGGCTTTTTCACGAGCC < 1:16521062/35‑1 CACGCTCCAGCAGTTTCAGGGCTTTTTCACGAGCC > 1:11021193/1‑35 CACGCTCCAGCAGTTTCAGGGCTTTTTCACGAGCC > 1:3986679/1‑35 CACGCTCCAGCAGTTTCAGGGCTTTTTCACGAGCC > 1:17114661/1‑35 ACGCTCCAGCAGTTTCAGGGCTTTTTCACGAGCCG > 1:7894340/1‑35 CGCTCCAGCAGTTTCAGGGCTTTTTCACGAGCCGG < 1:15239560/35‑1 CTCCAGCAGTTTCAGGGCTTTTTCACGAGCCGGCG > 1:15729134/1‑35 CCAGCAGTTTCAGGGCTTTTTCACGAGCCGGCGCT > 1:2621667/1‑35 CAGCAGTTTCAGGGCTTTTTCACGAGCCGGCGCTT > 1:19839372/1‑35 CAGCAGTTTCAGGGCTTTTTCACGAGCCCGCGCTT > 1:16246715/1‑35 CAGTTTCAGGGCTTTTTCACGAGCCGGCGCTTTAT > 1:7357921/1‑35 TTTCAGGGTTTTTTCACGAGCCGGCGCTTTATCGC < 1:16753271/35‑1 TTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGC > 1:2869030/1‑35 TTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGC < 1:12286736/35‑1 TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCN < 1:6527019/35‑1 TCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGT > 1:11408631/1‑35 TCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGT < 1:4012538/35‑1 TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/664651‑664687 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGT > REL606/666134‑666167 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |