Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,616,538 | A→C | 94.2% | Y337S (TAC→TCC) | nadR → | nicotinamide‑nucleotide adenylyltransferase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,616,538 | 0 | A→C | 94.2% | 13.1 ‑0.3 ‑0.5 | 182 | Y337S (TAC→TCC) | nadR | nicotinamide‑nucleotide adenylyltransferase |
Reads supporting (aligned to +/- strand): new base (84/87): ref base (6/5): total (90/92) | ||||||||||
Fisher's exact test strand distribution p-value = 7.65e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.84e-01 |
Only 100 of 183 total aligned reads displayed.
GCATCCGTTCGTACAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAAC > REL606/4616506‑4616569 | gCATCCGTTCGTACAGGCGTTGATTGATGAATCcc > 1:14543107/1‑35 (MQ=255) gCATCCGTTCGTACAGGCGTTGATTGATGAATCcc < 1:12255550/35‑1 (MQ=255) cATCCGTTCGTACAGTCGTTGATTGATGAATCCCg > 1:1541508/1‑35 (MQ=38) cATCCGTTCGTACAGGCGTTGATTGATGAATCCCg < 1:12802035/35‑1 (MQ=255) cATCCGTTCGTACAGGCGTTGATTGATGAATCCCg > 1:12548944/1‑35 (MQ=255) aTCCGTTCGTACAGGCGTTGATTGATGAATCCCGt < 1:14396070/35‑1 (MQ=255) aTCCGTTCGTACAGGCGTTGATTGATGAATCCCGt < 1:1599789/35‑1 (MQ=255) aTCCGTTCGTACAGGCGTTGATTGATGAATCCCGt > 1:18583314/1‑35 (MQ=255) aTCCGTTCGTACAGGCGTTGATTGATGAATCCCGt > 1:19490857/1‑35 (MQ=255) aTCCGTTCGTACAGGCGTTGATTGATGAATCCCGt > 1:7935974/1‑35 (MQ=255) tCCGTTCGTACAGGCGTTTATTGATGAATCCCGtt > 1:987457/1‑35 (MQ=37) ccGTTCGTACAGGCGTTGATTGATGAATCCCGttt < 1:7737656/35‑1 (MQ=255) cGTTCGTACAGGCGTTGATTGATGAATCCCGTTTc < 1:3344161/35‑1 (MQ=255) cGTTCGTACAGGCGTTGATTGATGAATCCCGTTTc > 1:787177/1‑35 (MQ=255) cGTTCGTACAGGCGTTGATTGATGAATCCCGTTTc < 1:9303661/35‑1 (MQ=255) gTTCGTACAGGCGTTGATTGATGAATCCCGTTTCg > 1:6650389/1‑35 (MQ=255) gTTCGTACAGGCGTTGATTGATGAATCCCGTTTCg < 1:8751744/35‑1 (MQ=255) gTTCGTACAGGCGTTGATTGATGAATCCCGTTTCg < 1:16719788/35‑1 (MQ=255) gTTCGTACAGGCGTTGATTGATGAATCCCGTTTCg < 1:17033780/35‑1 (MQ=255) gTTCGTACAGGCGTTGATTGATGAATACCGTTTCg > 1:1041502/1‑35 (MQ=255) ttggTACAGGCGTTGATTGATGAATACCGTTTCGa < 1:15686211/32‑1 (MQ=255) ttCGTACAGGCGTTGATTGATGAATCCCGTTTCGa < 1:9773032/35‑1 (MQ=255) ttCGTACAGGCGTTGATTGATGAATCCCGTTTCGa < 1:17522495/35‑1 (MQ=255) ttCGTACAGGCGTTGATTGATGAATCCCGTTTCGa > 1:12595867/1‑35 (MQ=255) ttCGTACAGGCGTTGATTGATGAATCCCGTTTCGa > 1:2916400/1‑35 (MQ=255) ttCGTACAGGCGTTGATTGATGAATCCCGTTTCGa > 1:11865796/1‑35 (MQ=255) tCGTACAGGCGTTGATTGATGAATCCCGTTTCGAt < 1:18228505/35‑1 (MQ=255) tCGTACAGGCGTTGATTGATGAATCCCGTTTCGAt > 1:5016028/1‑35 (MQ=255) tCGTACAGGCGTTGATTGATGAATCCCGTTTCGAt > 1:10260038/1‑35 (MQ=255) tCGTACAGGCGTTGATTGATGAATCCCGTTTCGAt > 1:10907948/1‑35 (MQ=255) cGTACAGGCGTTGATTGATGAATCCCGTTTCGATc < 1:9688178/35‑1 (MQ=255) cGTACAGGCGTTGATTGATGAATCCCGTTTCGATc > 1:4545736/1‑35 (MQ=255) cGTACAGGCGTTGATTGATGAATCCCGTTTCGATc < 1:19910220/35‑1 (MQ=255) cGTACAGGCGTTGATTGATGAATCCCGTTTCGATc < 1:6504969/35‑1 (MQ=255) cGTACAGGCGTTGATTGATGAATCCCGTTTCGATc < 1:16253376/35‑1 (MQ=255) cGTACAGGCGTTGATTGATGAATCCAGTTTCGATc < 1:2703947/35‑1 (MQ=37) gTACAGGCGTTGATTGATGAATCCCGTTTCGATCt < 1:7616333/35‑1 (MQ=255) tACAGGCGTTGATTGATGAATCCCGTTTCGATCTg < 1:12041388/35‑1 (MQ=255) tACAGGCGTTGATTGATGAATCCCGTTTCGATCTg > 1:2111421/1‑35 (MQ=255) tACAGGCGTTGATTGATGAATCCCGTTTCGATCTg > 1:20398986/1‑35 (MQ=255) tACAGGCGTTGATTGATGAATCCCGTTTCGATCTg < 1:5040718/35‑1 (MQ=255) tACAGGCGTTGATTGATGAATCCCGTTTCGATCTg > 1:14099792/1‑35 (MQ=255) aCAGGCGTTGATTGATGAATCCCGTTTCGATCTgg < 1:16719095/35‑1 (MQ=255) cAGGCGTTGATTGATGAATCCCGTTTCGATCTGGt > 1:12071957/1‑35 (MQ=255) aGGCGTTGATTGATGAATCCCGTTTCGATCTGGTg > 1:3676039/1‑35 (MQ=255) aGGCGTTGATTGATGAATCCCGTTTCGATCTGGTg > 1:425955/1‑35 (MQ=255) aGGCGTTGATTGATGAATCCCGTTTCGATCTGGTg < 1:15169639/35‑1 (MQ=255) aGGCGTTGATTGATGAATCCCGTTTCGATCTGGTg < 1:19860996/35‑1 (MQ=255) aGGCGTTGATTGATGAATCCCGTTTCGATCTGGTg < 1:12235519/35‑1 (MQ=255) ggCGTTGATTGATGAATCCCGTTTCGATCTGGTGa < 1:10767903/35‑1 (MQ=255) ggCGTTGATTGATGAATCCCGTTTCGATCTGGTGa > 1:13114951/1‑35 (MQ=255) gCGTTGATTGATGAATCCCGTTTCGATCTGGTGAt < 1:2606008/35‑1 (MQ=255) gCGTTGATTGATGAATACCGTTTCGATCTGGTGAt > 1:12751287/1‑35 (MQ=255) cGTTGATTGATGAATCCCGTTTCGATCTGTTGATc > 1:12959333/1‑35 (MQ=37) cGTTGATTGATGAATCCCGTTTCGATCTGGTGATc > 1:19184432/1‑35 (MQ=255) cGTTGATTGATGAATCCCGTTTCGATCTGGTGATc > 1:12138263/1‑35 (MQ=255) cGTTGATTGATGAATCCCGTTTCGATCTGGTGATc < 1:1967990/35‑1 (MQ=255) cGTTGATTGATGAATCCCGTTTCGATCTGGTGATc > 1:14687671/1‑35 (MQ=255) cGTTGATTGATGAATCCCGTTTCGATCTGGTGATc < 1:2180736/35‑1 (MQ=255) cGTTGATTGATGAATCCCGTTTCGATCTGGTGATc > 1:16587938/1‑35 (MQ=255) cGTTGATTGATGAATCCCGTTTAGATCTGGTGATc < 1:815053/35‑1 (MQ=38) gTTGATTGATGAATCCCGTTTCGATCTGGTGATcc < 1:8540831/35‑1 (MQ=255) gTTGATTGATGAATCCCGTTTCGATCTGGTGATcc > 1:2984338/1‑35 (MQ=255) gTTGATTGATGAATCCCGTTTCGATCTGGTGATcc > 1:15391858/1‑35 (MQ=255) ttgattgaTGAATCCCGTTTCGATCTGGTGATCct > 1:17164385/1‑35 (MQ=255) ttgattgaTGAATCCCGTTTCGATCTGGTGATCct < 1:9190602/35‑1 (MQ=255) ttgattgaTGAATCCCGTTTCGATCTGGTGATCct < 1:7337197/35‑1 (MQ=255) ttgattgaTGAATCCCGTTTCGATCTGGTGATCct > 1:7300607/1‑35 (MQ=255) ttattgatGAATCCCGTTTCGATCTGGTGATCctg < 1:16507873/33‑1 (MQ=38) tgattgatGAATCCCGTTTCGATCTGGTGATCctg > 1:9143626/1‑35 (MQ=255) tgattgatGAATCCCGTTTCGATCTGGTGATCctg < 1:7166226/35‑1 (MQ=255) tgattgatGAATCCCGTTTCGATCTGGTGATCctg < 1:2540188/35‑1 (MQ=255) gattgatGAATCCCGTTTCGATCTGGTGATCctgc > 1:13696955/1‑35 (MQ=255) gattgatGAATCCCGTTTCGATCTGGTGATCctgc > 1:11497288/1‑35 (MQ=255) gattgatGAATCCCGTTTCGATCTGGTGATCctgc > 1:18039345/1‑35 (MQ=255) gattgatGAATCCCGTTTCGATCTGGTGATCctgc < 1:18938557/35‑1 (MQ=255) gattgatGAATCCCGTTTCGATCTGGTGATCctgc < 1:5949636/35‑1 (MQ=255) gatcgatGAATCCCGTTTCGATCTGGTGATCctgc > 1:17935054/1‑35 (MQ=37) attgatGAATCCCGTTTCGATCTGGTGATCctgct > 1:14308615/1‑35 (MQ=255) attgatGAATCCCGTTTCGATCTGGTGATCctgct < 1:13533742/35‑1 (MQ=255) attgatGAATCCCGTTTCGATCTGGTGATCctgct > 1:5333232/1‑35 (MQ=255) attgatGAATACCGTTTCGATCTGGTGATCctgct > 1:387071/1‑35 (MQ=255) ttgatTAATCCCGTTTCGATCTGGTGATCctgctg > 1:1853348/1‑35 (MQ=37) ttgatGAATCCCGTTTCGATCTGGTGATCctgctg < 1:6517953/35‑1 (MQ=255) ttgatGAATCCCGTTTCGATCTGGTGATCctgctg < 1:11713404/35‑1 (MQ=255) ttgatGAATCCCGTTTCGATCTGGTGATCctgctg < 1:1892525/35‑1 (MQ=255) tgatgaATCCCGTTTCGATCTGGTGATCCTGCTgg > 1:3069346/1‑35 (MQ=255) tgatgaATCCCGTTTCGATCTGGTGATCCTGCTgg > 1:17619655/1‑35 (MQ=255) tgatgaATCCCGTTTCGATCTGGTGATCCTGCTgg > 1:11965761/1‑35 (MQ=255) gatgaATCCCGTTTCGATCTGGTGATCCTGCTGga > 1:11627000/1‑35 (MQ=255) gatgaATCCCGTTTCGATCTGGTGATCCTGCTGga > 1:13045269/1‑35 (MQ=255) gatgaATCCCGTTTCGATCTGGTGATCCTGCTGga > 1:1547247/1‑35 (MQ=255) gatgaATCCCGTTTCGATCTGGTGATCCTGCTGga > 1:14860938/1‑35 (MQ=255) atgaATCCCGTTTCGATCTGGTGATCCTGCTGgag > 1:2296320/1‑35 (MQ=255) atgaATCCCGTTTCGATCTGGTGATCCTGCTGgag < 1:13930193/35‑1 (MQ=255) atgaATCCCGTTTCGATCTGGTGATCCTGCTGgag < 1:1057959/35‑1 (MQ=255) tgaATCCCGTTTCGATCTGGTGATCCTGCTGgaga < 1:10699568/35‑1 (MQ=255) gaATCCCGTTTCGATCTGGTGATCCTGCTGGAGaa > 1:19288501/1‑35 (MQ=255) aaTCCCGTTTCGATCTGGTGATCCTGCTGGAGaac > 1:3435218/1‑35 (MQ=255) aaTCCCGTTTCGATCTGGTGATCCTGCTGGAGaac > 1:8106661/1‑35 (MQ=255) | GCATCCGTTCGTACAGGCGTTGATTGATGAATACCGTTTCGATCTGGTGATCCTGCTGGAGAAC > REL606/4616506‑4616569 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |