Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 3,475,057 C→T 36.6% intergenic (+193/‑168) yhgI → / → gntT predicted gluconate transport associated protein/gluconate transporter, high‑affinity GNT I system

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,475,0570C→T36.6% 148.2 ‑2.7 ‑0.0153intergenic (+193/‑168)yhgI/gntTpredicted gluconate transport associated protein/gluconate transporter, high‑affinity GNT I system
Reads supporting (aligned to +/- strand):  new base (34/22):  ref base (43/53):  total (77/76)
Fisher's exact test strand distribution p-value = 6.59e-02
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.70e-01

Only 100 of 175 total aligned reads displayed.

CCGCTCTGGTGATTCTCAAACGCCAGATGTTACCCGTATCATTCACATGGGTACCAAACATACTCCTGA  >  REL606/3475023‑3475091
                                  |                                  
ccGCTCTGGTGATTCTCAAACGCCAGATGTTAccc                                    >  1:16832257/1‑35 (MQ=255)
 cGCTCTGGTGATTCTCAAACGCCAGATGTTACCCg                                   >  1:16011833/1‑35 (MQ=255)
 cGCTCTGGTGATTCTCAAACGCCAGATGTTACCCg                                   <  1:5822986/35‑1 (MQ=255)
  gCTCTGGTGATTCTCAAACGCCAGATGTTACCCGt                                  <  1:18270653/35‑1 (MQ=255)
  gCTCTGGTGATTCTCAAACGCCAGATGTTACCCGt                                  >  1:19407910/1‑35 (MQ=255)
   ctctGGTGATTCTCAAACGCCAGATGTTACCCGTa                                 <  1:7005958/35‑1 (MQ=255)
   ctctGGTGATTCTCAAACGCCAGATGTTACCCGTa                                 >  1:2294094/1‑35 (MQ=255)
    tctGGTGATTCTCAAACGCCAGATGTTACCTGTAt                                <  1:18083177/35‑1 (MQ=255)
    tctGGTGATTCTCAAACGCCAGATGTTACCCGTAt                                >  1:20035849/1‑35 (MQ=255)
    tctGGTGATTCTCAAACGCCAGATGTTACCCGTAt                                <  1:20591128/35‑1 (MQ=255)
     ctGGTGATTCTCAAACGCCAGATGTTACCTGTATc                               >  1:1985355/1‑35 (MQ=255)
     ctGGTGATTCTCAAACGCCAGATGTTACCCGTATc                               <  1:8975596/35‑1 (MQ=255)
     ctGGTGATTCTCAAACGCCAGATGTTACCCGTATc                               >  1:11078257/1‑35 (MQ=255)
      tGGTGATTCTCAAACGCCAGATGTTACCTGTATCa                              >  1:98512/1‑35 (MQ=255)
      tGGTGATTCTCAAACGCCAGATGTTACCTGTATCa                              <  1:6063512/35‑1 (MQ=255)
      tGGTGATTCTCAAACGCCAGATGTTACCCGTATCa                              >  1:15353699/1‑35 (MQ=255)
      tGGTGATTCTCAAACGCCAGATGTTACCCGTATCa                              >  1:4766923/1‑35 (MQ=255)
       ggTGATTCTCAAACGCCAGATGTTACCTGTATCAt                             <  1:14634401/35‑1 (MQ=255)
        gTGATTCTCAAACGCCAGATGTTACCTGTATCAtt                            >  1:11392264/1‑35 (MQ=255)
        gTGATTCTCAAACGCCAGATGTTACCCGTATCAtt                            <  1:13246095/35‑1 (MQ=255)
         tGATTCTCAAACGCCAGATGTTACCCGTATCATTc                           <  1:7540006/35‑1 (MQ=255)
          gATTCTCAAACGCCAGATGTTACCTGTATCATTca                          >  1:15955526/1‑35 (MQ=255)
          gATTCTCAAACGCCAGATGTTACCCGTATCATTca                          >  1:142937/1‑35 (MQ=255)
           aTTCTCAAACGCCAGATGTTACCCGTATCATTcac                         >  1:2496232/1‑35 (MQ=255)
           aTTCTCAAACGCCAGATGTTACCCGTATCATTcac                         <  1:10532416/35‑1 (MQ=255)
            ttCTCAAACGCCAGATGTTACCTGTATCATTcaca                        <  1:9263590/35‑1 (MQ=255)
             tctcAAACGCCAGATGTTACCCGTATCATTCACAt                       <  1:3270192/35‑1 (MQ=255)
             tctcAAACGCCAGATGTTACCCGTATCATTCACAt                       >  1:3805507/1‑35 (MQ=255)
             tctcAAACGCCAGATGTTACCCGTATCATTCACAt                       <  1:15106677/35‑1 (MQ=255)
              ctcAAACGCCAGATGTTACCCGTATCATTCACATg                      <  1:3996888/35‑1 (MQ=255)
               tcAAACGCCAGATGTTACCCGTATCATTCACATgg                     >  1:16612227/1‑35 (MQ=255)
               tcAAACGCCAGATGTTACCCGTATCATTCACATgg                     <  1:8057534/35‑1 (MQ=255)
                cAAACGCCAGATGTTACCTGTATCATTCACATggg                    <  1:9587272/35‑1 (MQ=255)
                cAAACGCCAGATGTTACCCGTATCATTCACATggg                    <  1:1007171/35‑1 (MQ=255)
                 aaaCGCCAGATGTTACCTGTATCATTCACATGGGt                   >  1:13023830/1‑35 (MQ=255)
                 aaaCGCCAGATGTTACCCGTGTCATTAACATGGGt                   <  1:18099969/35‑1 (MQ=37)
                 aaaCGCCAGATGTTACCCGTATCATTCACATGGGt                   >  1:2634551/1‑35 (MQ=255)
                 aaaCGCCAGATGTTACCCGTATCATTCACATGGGt                   >  1:13847187/1‑35 (MQ=255)
                  aaCGCCAGATGTTACCCGTATCATTCACATGGGTa                  <  1:3842588/35‑1 (MQ=255)
                   aCGCCAGATGTTACCTGTATCATTCACATGGGTAc                 >  1:12276288/1‑35 (MQ=255)
                    cGCCAGATGTTACCTGTATCATTCACATGGGTAcc                >  1:8724506/1‑35 (MQ=255)
                    cGCCAGATGTTACCTGTATCATTCACATGGGTAcc                >  1:15224633/1‑35 (MQ=255)
                    cGCCAGATGTTACCCGTATCATTCACATGGGTAcc                <  1:11218238/35‑1 (MQ=255)
                     gCCAGATGTTACCTGTATCATTCACATGGGTACCa               >  1:17347120/1‑35 (MQ=255)
                     gCCAGATGTTACCTGTATCATTCACATGGGTACCa               <  1:4451395/35‑1 (MQ=255)
                     gCCAGATGTTACCTGTATCATTCACATGGGTACCa               <  1:13183918/35‑1 (MQ=255)
                     gCCAGATGTTACCTGTATCATTCACATGGGTACCa               >  1:10453572/1‑35 (MQ=255)
                     gCCAGATGTTACCTGTATCATTCACATGGGTACCa               <  1:5398157/35‑1 (MQ=255)
                     gCCAGATGTTACCCGTATCATTCACATGGGTACCa               <  1:16907065/35‑1 (MQ=255)
                     gCCAGATGTTACCCGTATCATTCACATGGGTACCa               >  1:10128843/1‑35 (MQ=255)
                      ccAGATGTTACCTGTATCATTCACATGGGTACCaa              >  1:6844298/1‑35 (MQ=255)
                      ccAGATGTTACCCGTATCATTCACATGGGTACCaa              <  1:9310584/35‑1 (MQ=255)
                       cAGATGTTACCTGTATCATTCACATGGGTACCaaa             <  1:7377568/35‑1 (MQ=255)
                       cAGATGTTACCTGTATCATTCACATGGGTACCaaa             >  1:1619651/1‑35 (MQ=255)
                       cAGATGTTACCTGTATCATTCACATGGGTACCaaa             >  1:5334042/1‑35 (MQ=255)
                       cAGATGTTACCTGTATCATTCACATGGGTACCaaa             >  1:15400140/1‑35 (MQ=255)
                       cAGATGTTACCCGTATCATTCACATGGGTACCaaa             <  1:7776096/35‑1 (MQ=255)
                       cAGATGTTACCCGTATCATTCACATGGGTACCaaa             >  1:17565776/1‑35 (MQ=255)
                       cAGATGTTACCCGTATCATTCACATGGGAACCaaa             >  1:11025026/1‑35 (MQ=255)
                        aGATGTTACCTGTATCATTCACATGGGTACCAAAc            >  1:18073640/1‑35 (MQ=255)
                        aGATGTTACCCGTATCATTCACATGGGTACCAAAc            <  1:17670386/35‑1 (MQ=255)
                        aGATGTTACCCGTATCATTCACATGGGTACCAAAc            <  1:19676482/35‑1 (MQ=255)
                         gATGTTACCTGTATCATTCACATGGGTACCAAACa           <  1:12573614/35‑1 (MQ=255)
                         gATGTTACCTGTATCATTCACATGGGTACCAAACa           <  1:10691715/35‑1 (MQ=255)
                         gATGTTACCTGTATCATTCACATGGGTACCAAACa           >  1:8468175/1‑35 (MQ=255)
                         gATGTTACCTCTATCATTCACATGGGTACCAAACa           >  1:17261676/1‑35 (MQ=38)
                         gATGTTACCCGTATCATTCACATGGGTACCAAACa           >  1:13371980/1‑35 (MQ=255)
                         gATGTTACCCGTATCATTCACATGGGTACCAAACa           <  1:19563074/35‑1 (MQ=255)
                         gATGTTACCCGTATCATTCACATGGGTACCAAACa           <  1:580700/35‑1 (MQ=255)
                         gATGTTACCCGTATCATTCACATGGGTACCAAACa           <  1:18422773/35‑1 (MQ=255)
                         gATGTTACCCGTATCATTCACATGGGTACCAAACa           >  1:1753164/1‑35 (MQ=255)
                          gtGTTACCTGTATCATTCACATGGGTACCAAACAt          <  1:18640378/34‑1 (MQ=255)
                          aTGTTACCTGTATCATTCACATGGGTACCAAACAt          <  1:12786396/35‑1 (MQ=255)
                          aTGTTACCCGTATCATTCACATGGGTACCAAACAt          >  1:14526224/1‑35 (MQ=255)
                          aTGTTACCCGTATCATTCACATGGGTACCAAACAt          <  1:7094818/35‑1 (MQ=255)
                           tGTTACCTGTATCATTCACATGGGTACCAAACATa         <  1:14745986/35‑1 (MQ=255)
                           tGTTACCCGTATCATTCACATGGGTACCAAACATa         <  1:295073/35‑1 (MQ=255)
                           tGTTACCCGTATCATTCACATGGGTACCAAACATa         <  1:18940670/35‑1 (MQ=255)
                           tGTTACCCGTATCATTCACATGGGTACCAAACATa         <  1:13322485/35‑1 (MQ=255)
                            gTTACCTGTATCATTCACATGGGTACCAAACATAc        >  1:18417893/1‑35 (MQ=255)
                            gTTACCTGTATCATTCACATGGGTACCAAACATAc        <  1:11831925/35‑1 (MQ=255)
                            gTTACCCGTATCATTCACATGGGTACCAAACATAc        >  1:14193867/1‑35 (MQ=255)
                            gTTACCCGTATCATTCACATGGGTACCAAACATAc        >  1:18913229/1‑35 (MQ=255)
                            gTTACCCGTATCATTCACATGGGTACCAAACATAc        <  1:13599548/35‑1 (MQ=255)
                             ttACCTGTATCATTCACATGTGTACCAAACATACt       >  1:19020642/1‑35 (MQ=38)
                             ttACCTGTATCATTCACATGGGTACCAAACATACt       >  1:564144/1‑35 (MQ=255)
                             ttACCTGTATCATTCACATGGGTACCAAACATACt       >  1:1305277/1‑35 (MQ=255)
                             ttACCTGTATCATTCACATGGGTACCAAACATACt       >  1:6423404/1‑35 (MQ=255)
                             ttACCCGTATCATTCACATGGGTACCAAACATACt       <  1:941018/35‑1 (MQ=255)
                             ttACCCGTATAATTCACATGGGTACCAAACATACt       <  1:2265624/35‑1 (MQ=255)
                              tACCCGTATCATTCACATGGGTACCAAACATACTc      <  1:5501696/35‑1 (MQ=255)
                               aCCTGTATCATTCACATGGGTACCAAACATACTcc     >  1:10682739/1‑35 (MQ=255)
                               aCCCGTATCATTCACATGGGTACCAAACATACTcc     >  1:16849381/1‑35 (MQ=255)
                               aCCCGTATCATTCACATGGGTACCAAACATACTcc     <  1:12433210/35‑1 (MQ=255)
                                cccGTATCATTCACATGGGTACCAAACATACTCCt    >  1:7524579/1‑35 (MQ=255)
                                 ccGTATCATTCACATGGGTACCAAACATACTCCTg   <  1:14619782/35‑1 (MQ=255)
                                  cGTATCATTCACATGGGTACCAAACATACTCCTGa  <  1:18533330/35‑1 (MQ=255)
                                  cGTATCATTCACATGGGTACCAAACATACTCCTGa  >  1:14209800/1‑35 (MQ=255)
                                  cGTATCATTCACATGGGTACCAAACATACTCCTGa  >  1:15742796/1‑35 (MQ=255)
                                  cGTATCATTCACATGGGTACCAAACATACTCCTGa  <  1:12388232/35‑1 (MQ=255)
                                  |                                  
CCGCTCTGGTGATTCTCAAACGCCAGATGTTACCCGTATCATTCACATGGGTACCAAACATACTCCTGA  >  REL606/3475023‑3475091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.