New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 411751 =19 (0.180)8 (0.080) 3/44 NT 12.3% coding (313/591 nt) thiJ hypothetical protein
?REL606 = 1138232 97 (1.030)coding (395/648 nt) grxB glutaredoxin 2 (Grx2)

TGCGGTACCAGCACGGTGGCTGGCGCGGCGCAAATAGCCGCGACGATACGCCCGGAACGGTGGAACTGT  >  REL606/411717‑411785
                                   |                                  
tGCGGTACCAGCACGGTGGCTGGCGCGGCGCAAAt                                    <  1:14923551/35‑1 (MQ=255)
tGCGGTACCAGCACGGTGGCTGGCGCGGCGCAAAt                                    <  1:7231498/35‑1 (MQ=255)
 gCGGTACCAGCACGGTGGCTGGCGCGGCGCAAATa                                   <  1:16011013/35‑1 (MQ=255)
 gCGGTACCAGCACGGTGGCTGGCGCGGCGCAAATa                                   <  1:13957409/35‑1 (MQ=255)
 gCGGTACCAGCACGGTGGCTGGCGCGGCGCAAATa                                   <  1:17863705/35‑1 (MQ=255)
 gCGGTACCAGCACGGTGGCTGGCGCGGCGCAAATa                                   <  1:10133163/35‑1 (MQ=255)
 agaccgtcagagtgggccagcaggtcggcaaaatt                                    <  1:3495012‑M1/1‑1 (MQ=255)
 agaccgtcagagtgggccagcaggtcggcaaaatt                                    >  1:7436980‑M1/35‑35 (MQ=255)
 agaccgtcagagtgggccagcaggtcggcaaaatt                                    <  1:18798501‑M1/1‑1 (MQ=255)
 agaccgtcagagtgggccagcaggtcggcaaaatt                                    >  1:19423722‑M1/35‑35 (MQ=255)
 agaccgtcagagtgggccagcaggtcggcaaaatt                                    <  1:20121274‑M1/1‑1 (MQ=255)
 agaccgtcagagtgggccagcaggtccgcaaaatt                                    <  1:16852742‑M1/1‑1 (MQ=255)
  gaccgtcagagtgggccagcaggtcggcaaaatTa                                   <  1:6843817‑M1/2‑1 (MQ=255)
  gaccgtcagagtgggccagcaggtcggcaaaatTa                                   >  1:16046240‑M1/34‑35 (MQ=255)
  gaccgtcagagtgggccagcaggtcggcaaaatTa                                   >  1:9402505‑M1/34‑35 (MQ=255)
  cGGTACCAGCACGGTGGCTGGCGCGGCGCAAATAg                                  <  1:11538101/35‑1 (MQ=255)
  cGGTACCAGCACGGTGGCTGGCGCGGCGCAAATAg                                  <  1:6965140/35‑1 (MQ=255)
   ggTACCAGCACGGTGGCTGGCGCGGCGCAAATAGc                                 <  1:7649917/35‑1 (MQ=255)
    gtcccAGCGCGGTGGCTGGCGCGGCGCAAATAGcc                                <  1:13592663/32‑1 (MQ=37)
    gTACCAGCACGGTGGCTGGCGCGGGGCCAATaaga                                >  1:10829153/1‑32 (MQ=25)
    gTACCAGCACGGTGGCTGGCGCGGCGCAAATAGcc                                <  1:7494089/35‑1 (MQ=255)
                 ggctggcGCGGCGCAAATATCCGCGACGAAACGcc                   >  1:2732964/1‑35 (MQ=37)
                   cgggcgcggcaaAATTAGCCGCGACGATACGCCCg                 <  1:17660675/33‑1 (MQ=21)
                    tggcGCGGCGCAAATAGCCGCGACGATACGCCCgg                >  1:15201330/1‑35 (MQ=255)
                    tggcGCGGCGCAAATAGCCGCGACGATACGCCCgg                >  1:14622639/1‑35 (MQ=255)
                    tggcGCGGCGCAAATAGCCGCGAAGATACGCCCgg                >  1:17645617/1‑35 (MQ=255)
                    gggcgcggcagATTTAGCCGCGACGATACGCCCgg                <  1:13952355/34‑1 (MQ=16)
                     ggcgcggcgcAAATAGCCGCGACGATACGGCCGGa               >  1:20496253/1‑35 (MQ=255)
                     ggcgcggcgcAAATAGCCGCGACGATACGCCCGGa               >  1:13429123/1‑35 (MQ=255)
                     ggcgcggcgcAAATAGCCGCGACGATACGCCCGGa               >  1:360111/1‑35 (MQ=255)
                      gcgcggcgcAAATAGCCGCGACGATACGCCCGGaa              >  1:18908766/1‑35 (MQ=255)
                       cgcggcgcAAATAGCCGCGACGATACGCCCGGAAc             >  1:14697672/1‑35 (MQ=255)
                       cgcggcgcAAATAGCCGCGACGATACGCCAGGAAc             >  1:19112656/1‑35 (MQ=255)
                        gcggcgcAAATAGCCGCGACGATACGCCCGGAACg            >  1:10348133/1‑35 (MQ=255)
                        gcggcgcAAATAGCCGCGACGATACGCCCGGAACg            >  1:7769451/1‑35 (MQ=255)
                        gcggcgcAAATAGCCGCGACGATACGCCCGGAACg            >  1:12056440/1‑35 (MQ=255)
                        cggggcaaaatTAGCCGCGACGATACGCCCGGAAc             >  1:1830325‑M1/12‑35 (MQ=255)
                         gggcggAAATTAGCCGCGACGATACGCCCGGAACg            <  1:11700070/34‑1 (MQ=25)
                         gcggcgaaatTAGCCGCGACGATACGCCCGGAACg            >  1:3806041‑M1/11‑35 (MQ=255)
                         cggcgcAAATAGCCGCGACGATACGCCCGGAACgg           >  1:8668289/1‑35 (MQ=255)
                          cggcaaaatTAGCCGCGACGATACGCCCGGAACgg           >  1:6307786‑M1/10‑35 (MQ=255)
                           ggcgaaatTAGCCGCGACGATACGCCCGGAACGGt          >  1:15156006‑M1/9‑35 (MQ=255)
                           ggcaaattTAGCCGCGACGATACGCCCGGAACGGt          >  1:20469088‑M1/9‑35 (MQ=255)
                           ggcaaaatTAGCCGCGACGATACGCCCGGAACGGt          >  1:3610130‑M1/9‑35 (MQ=255)
                           gcgcAAATAGCCGCGACGATACGCCCGGAACGGTg         >  1:14050651/1‑35 (MQ=255)
                            gcacaatTAGCCGCGACGATACGCCCGGAACGGTg         >  1:6535422‑M1/8‑35 (MQ=255)
                            cgcAAATAGCCGCGACGATACGCCCGGAACGGTgg        >  1:15841771/1‑35 (MQ=255)
                            acaaaatTAGCCGCGACGATACGCCCGGAACGGTg         >  1:17698701‑M1/8‑35 (MQ=255)
                             gcAAATAGCCGCGACGATACGCCCGGAACGGTggg       >  1:6953025/1‑34 (MQ=255)
                             gcAAATAGCCGCGACGATACGCCCGGAACGGTGGa       >  1:11206/1‑35 (MQ=255)
                             gcAAATAGCCGCGACGATACGCCCGGAACGGGGGa       >  1:18619851/1‑35 (MQ=255)
                              cAAATAGCCGCGACGATACGCCCGGAACGGTggga      >  1:149350/1‑33 (MQ=255)
                              cAAATAGCCGCGACGATACGCCCGGAACGGTGGaa      >  1:3329349/1‑35 (MQ=255)
                              cAAATAGCCGCGACGATACGCCCGGAACGGTGGaa      >  1:12133708/1‑35 (MQ=255)
                              cAAATAGCCGCGACGATACGCCCGGAACGGTGGaa      >  1:1740426/1‑35 (MQ=255)
                              aaaatTAGCCGCGACGATACGCCCGGAACGGTGGa       >  1:8080771‑M1/6‑35 (MQ=255)
                               aaatTAGCCGCGACGATACGCCCGGAACGGTGGaa      >  1:11059888‑M1/5‑35 (MQ=255)
                               aaatTAGCCGCGACGATACGCCCGGAACGGTGGaa      >  1:5716611‑M1/5‑35 (MQ=255)
                               aaaTAGCCGCGACGATACGCCCGGAACGGTGGAAc     >  1:7774605/1‑35 (MQ=255)
                               aaaTAGCCGCGACGATACGCCCGGAACGGTGGAAc     >  1:18990876/1‑35 (MQ=255)
                               aaaTAGCCGCGACGATACGCCCGGAACGGTGGAAc     >  1:1679046/1‑35 (MQ=255)
                                atttAGCCGCGACGATACGCCAGGAACGGTGGAAc     <  1:9629859/32‑1 (MQ=37)
                                attTAGCCGCGACGATACGCCCGGAACGGTGGAAc     >  1:13311324‑M1/4‑35 (MQ=255)
                                aatTAGCCGCGACGATACGCCCGGAACGGTGGAAc     >  1:12676024‑M1/4‑35 (MQ=255)
                                aatTAGCCGCGACGATACGCCCGGAACGGTGGAAc     >  1:3233185‑M1/4‑35 (MQ=255)
                                aaTAGCCGCGACGATACGCCCGGAACGGTGGAACt    >  1:8481779/1‑35 (MQ=255)
                                 ttTAGCCGCGACGATACGCCCGGAACGGTGGAACt    >  1:10236124‑M1/3‑35 (MQ=255)
                                 ttTAGCCGCGACGATACGCCCGGAACGGTGGAACt    >  1:875189‑M1/3‑35 (MQ=255)
                                 atTAGCCGCGACGATACGCCCGGAACGGTGGAACt    >  1:2958818‑M1/3‑35 (MQ=255)
                                 atTAGCCGCGACGATACGCCCGGAACGGTGGAACt    >  1:9558335‑M1/3‑35 (MQ=255)
                                 atTAGCCGCGACGATACGCCCGGAACGGTGGAACt    >  1:10396159‑M1/3‑35 (MQ=255)
                                 aTAGCCGCGACGATACGCCCTGAACGGTGGAACTg   >  1:14294355/1‑35 (MQ=255)
                                 aTAGCCGCGACGATACGCCCGGAACTGTGGAACTg   >  1:2016243/1‑35 (MQ=255)
                                  tTAGCCGCGACGATACGCCAGGAACGGTGGAACTg   >  1:17439896‑M1/2‑35 (MQ=255)
                                   tAGCCGCGATGATACGCCCGGAACGGGGGAACTGt  >  1:8819811/1‑35 (MQ=37)
                                   TAGCCGCGACGATACGCCCGGAACGGTGGCACTGt  <  1:4238296‑M1/35‑1 (MQ=255)
                                   TAGCCGCGACGATACGCCCGGAACGGTGGAACTGt  <  1:18070390‑M1/35‑1 (MQ=255)
                                   TAGCCGCGACGATACGCCCGGAACGGTGGAACTGt  >  1:5247114‑M1/1‑35 (MQ=255)
                                   TAGCCGCGACGATACGCCCGGAACGGTGGAACTGt  >  1:16660168‑M1/1‑35 (MQ=255)
                                   |                                  
TGCGGTACCAGCACGGTGGCTGGCGCGGCGCAAATAGCCGCGACGATACGCCCGGAACGGTGGAACTGT  >  REL606/411717‑411785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.