New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 293737 =51 (0.500)8 (0.090) 4/40 NT 11.3% intergenic (+7/‑520) ykgD/ykgE predicted DNA‑binding transcriptional regulator/predicted oxidoreductase
?REL606 = 1036069 83 (0.970)intergenic (+41/+35) ycbG/ompA hypothetical protein/outer membrane protein A (3a;II*;G;d)

Only 100 of 116 total aligned reads displayed.

GGAAAGGGTCAGACAGCTTGCACCCTGAATAAAACCGCCAGAAATCAGGGCAAAGATAATCCGCATTCC  >  REL606/293703‑293771
                                  |                                  
ggAAAGGTTCAGACAGCTTGCACCCTGAATAAAAc                                    <  1:10445381/35‑1 (MQ=255)
ggAAAGGGTCAGACAGCTTGCACCCTGAATAAAAc                                    <  1:19956607/35‑1 (MQ=255)
ggAAAGGGTCAGACAGCTTGCACCCTGAATAAAAc                                    <  1:12382732/35‑1 (MQ=255)
ggAAAGGGTCAGACAGCTTGCACCCTGAATAAAAc                                    <  1:7633528/35‑1 (MQ=255)
ggAAAGGGTCAGACAGCTTGCACCCTGAATAAAAc                                    >  1:108160/1‑35 (MQ=255)
aagtcagttcaatttactaaaggcaaaaaaaaccc                                    >  1:15416460‑M1/35‑35 (MQ=255)
aagtcagttcaatttactaaaggcaaaaaaaaccc                                    >  1:8127690‑M1/35‑35 (MQ=255)
aagtcagttcaatttactaaaggcaaaaaaaaccc                                    <  1:15387150‑M1/1‑1 (MQ=255)
aagtcagttcaatttactaaaggcaaaaaaaaccc                                    <  1:15252871‑M1/1‑1 (MQ=255)
 gAAAGGGTCAGACAGCTTGCACCCTGAATAAAAcc                                   <  1:2746971/35‑1 (MQ=255)
 gAAAGGGTCAGACAGCTTGCACCCTGAATAAAAcc                                   <  1:17181215/35‑1 (MQ=255)
 gAAAGGGTCAGACAGCTTGCACCCTGAATAAAAcc                                   <  1:1853774/35‑1 (MQ=255)
 gAAAGGGTCAGACAGCTTGCACCCTGAATAAAAcc                                   <  1:7314301/35‑1 (MQ=255)
  gtcagttcaatttactaaaggcaaaaaaaaccCCg                                  >  1:11359193‑M1/33‑35 (MQ=255)
  gtcagttcaatttactaaaggcaaaaaaaaccCCg                                  <  1:1575650‑M1/3‑1 (MQ=255)
  gtcagttcaatttactaaaggcaaaaaaaaccCCg                                  >  1:8008890‑M1/33‑35 (MQ=255)
  aaaTGGTCAGACAGCTTGCACCCTGAATAAAACCg                                  >  1:8014576/1‑35 (MQ=255)
  aaaGTGTCAGACAGCTTGCACCCTGAATAAAACCg                                  >  1:12475002/1‑35 (MQ=255)
  aaaGGGTCAGACAGCTTGCACCCTGAATAAAACCg                                  >  1:3177503/1‑35 (MQ=255)
  aaaGGGTCAGACAGCTTGCACCCTGAATAAAACCg                                  >  1:4132910/1‑35 (MQ=255)
  aaaGGGTCAGACAGCTTGCACCCTGAATAAAACCg                                  <  1:19864135/35‑1 (MQ=255)
   tcagttcaatttactaaaggcaaaaaaaaccCCGc                                 >  1:16955710‑M1/32‑35 (MQ=255)
   tcagttcaatttactaaaggcaaaaaaaaccCCGc                                 >  1:7378951‑M1/32‑35 (MQ=255)
   tcagttcaatttactaaaggcaaaaaaaaccCCGc                                 >  1:12730396‑M1/32‑35 (MQ=255)
   aaGGGTCAGACAGCTTGCACCCTGAATAAAACCGc                                 >  1:18386110/1‑35 (MQ=255)
    aGGGTCAGACAGCTTGCACCCTGAATAAAACCGcc                                >  1:14381637/1‑35 (MQ=255)
       gTCAGACAGCTTGCACCCTGAATAAAACCGCCAGa                             >  1:19752233/1‑35 (MQ=255)
       gTCAGACAGCTTGCACCCTGAATAAAACCGCCAGa                             >  1:95625/1‑35 (MQ=255)
       gTCAGACAGCTTGCACCCTGAATAAAACCGCCAGa                             >  1:15733768/1‑35 (MQ=255)
       gTCAGACAGCTTGAACCCTGAATAAAACCGCCCGa                             >  1:11949879/1‑35 (MQ=25)
        tCAGACAGCTTGCACCCTGAATAAAACCGCCAGaa                            >  1:308668/1‑35 (MQ=255)
        tCAGACAGCTTGCACCCTGAATAAAACCGCCAGaa                            >  1:11330340/1‑35 (MQ=255)
         cAGACAGCTTGCACCCTGGATAAAACCGCCAGaaa                           >  1:20321671/1‑35 (MQ=255)
         cAGACAGCTTGCACCCTGAATAAAACCGCCAGaaa                           >  1:14412326/1‑35 (MQ=255)
         cAGACAGCTTGCACCCTGAATAAAACCGCCAGaaa                           >  1:3797317/1‑35 (MQ=255)
         cAGACAGCTTGCACCCTGAATAAAACCGCCAGaaa                           >  1:16714482/1‑35 (MQ=255)
          aGACAGCTTGCACCCTGAATAAAACCGCCAGAAAt                          >  1:2524512/1‑35 (MQ=255)
          aGACAGCTTGCACCCTGAATAAAACCGCCAGAAAt                          >  1:7144761/1‑35 (MQ=255)
           gACAGCTTGCACCCTGAATAAAACCGCCAGAAATc                         >  1:11963518/1‑35 (MQ=255)
            aCAGCTTGCACCCTGAATAAAACCGCCAGAAATCa                        >  1:3359375/1‑35 (MQ=255)
            aCAGCTTGCACCCTGAATAAAACCGCCAGAAATCa                        >  1:276746/1‑35 (MQ=255)
            aCAGCTTGCACCCTGAATAAAACCGCCAGAAATCa                        >  1:15264958/1‑35 (MQ=255)
            aCAGCTTGCACCCTGAATAAAACCGCCAGAAATCa                        >  1:3437260/1‑35 (MQ=255)
             cAGCTTGCACCCTGAATAAAACCGCCAGAAATCAg                       >  1:13029628/1‑35 (MQ=255)
              aGCTTGCACCCTGAATAAAACCGCCAGCAATCAgg                      >  1:19757021/1‑35 (MQ=255)
              aGCTTGCACCCTGAATAAAACCGCCAGAAATCAgg                      >  1:8441981/1‑35 (MQ=255)
                cTTGCACCCTGAATAAAACCGCCAGAAATCAGGGc                    >  1:7798579/1‑35 (MQ=255)
                cTTGCACCCTGAATAAAACCGCCAGAAATCAGGGc                    >  1:15086481/1‑35 (MQ=255)
                cTTGCACCCTGAATAAAACCGCCAGAAATCAGGGc                    >  1:16697932/1‑35 (MQ=255)
                cTTGCACCCTGAATAAAACCGCCAGAAATCAGGGc                    >  1:10452539/1‑35 (MQ=255)
                 ttGCACCCTGAATAAAACCGCCAGAAATCAGGGCa                   >  1:12815542/1‑35 (MQ=255)
                  tGCACCCTGAATAAAACCGCCAGAAATCAGGGCaa                  >  1:8168579/1‑35 (MQ=255)
                   gCACCCTGAATAAAACCGCCAGAAATCAGGGCaaa                 >  1:9535365/1‑35 (MQ=255)
                    cACCCTGAATAAAACCGCCAGAAATCAGGGCAAAg                >  1:10587179/1‑35 (MQ=255)
                     aCCCTGAATAAAACCGCCAGAAATCAGTGCAAAGa               >  1:12735174/1‑35 (MQ=255)
                      cccTGAATAAAACCGCCAGAAATCAGGGCAAAGAt              >  1:18075004/1‑35 (MQ=255)
                      cccTGAATAAAACCGCCAGAAATCAGGGCAAAGAt              >  1:12037997/1‑35 (MQ=255)
                      ccaaaaaaacccCCGCCAGAAATCAGGGCAAAGAt              >  1:6125878‑M1/13‑35 (MQ=255)
                       ccTGAATAAAACCGCCAGAAATCAGGGCAAAGATa             >  1:10539591/1‑35 (MQ=255)
                       caaaaaaaaccCCGCCAGAAATCAGGGCAAAGATa             >  1:4744627‑M1/12‑35 (MQ=255)
                        cTGAATAAAACCGCCAGAAATCAGGGCAAAGATaa            >  1:8736246/1‑35 (MQ=255)
                        cTGAATAAAACCGCCAGAAATCAGGGCAAAGATaa            >  1:4714666/1‑35 (MQ=255)
                         cgAATAAAACCGCCAGAAATCAGGGCAAAGATAAt           >  1:15892764/2‑35 (MQ=255)
                         cgAATAAAACCGCCAGAAATCAGGGCAAAGATAAt           >  1:5847292/2‑35 (MQ=255)
                         aaaacaaccCCGCCAGAAATCAGGGCAAAGATAAt           >  1:12502367‑M1/10‑35 (MQ=255)
                         aaaaaacccCCGCCAGAAATCAGGGCAAAGATAAt           >  1:10405087‑M1/10‑35 (MQ=255)
                         aaaaaaaccCCGCCAGAAATCAGGGCAAAGATAAt           >  1:798993‑M1/10‑35 (MQ=255)
                         aaaaaaaccCCGCCAGAAATCAGGGCAAAGATAAt           >  1:19861292‑M1/10‑35 (MQ=255)
                          gAATAAAACCGCTAGAAATCAGGGCAAAGATAATc          >  1:11609375/1‑35 (MQ=255)
                          gAATAAAACCGCCAGAAATCAGGGCAAAGATAATc          >  1:15922435/1‑35 (MQ=255)
                          aaaaacccCCGCCAGAAATCAGGGCAAAGATAATc          >  1:18002812‑M1/9‑35 (MQ=255)
                           aaTAAAACCGCCAGAAATCAGGTCAAAGATAATcc         >  1:4309782/1‑35 (MQ=255)
                           aaTAAAACCGCCAGAAATCAGGGCAAAGATAATcc         >  1:14754982/1‑35 (MQ=255)
                           aaTAAAACCGCAAGAAATCAGGGCAAAGATAATcc         <  1:1448922/35‑1 (MQ=255)
                           aaTAAAACCGCAAGAAATCAGGGCAAAGATAATcc         <  1:5673802/35‑1 (MQ=255)
                            aTAAAACCGCCAGAAATCAGGGCAAAGATAAtaga        >  1:7845770/1‑32 (MQ=255)
                             tAAAACCGCCAGAAATCAGGGCAAAGATAATCCGc       >  1:3497071/1‑35 (MQ=255)
                             tAAAACCGCCAGAAATCAGGGCAAAGATAATCCGc       >  1:2226633/1‑35 (MQ=255)
                             tAAAACCGCCAGAAATCAGGGCAAAGATAATCCGc       >  1:16027972/1‑35 (MQ=255)
                             cacccCCGCCAGAAATCAGGGCAAAGATAATCCGc       >  1:1473895‑M1/6‑35 (MQ=255)
                             aaaccCCGCCAGAAATCAGGGCAAAGATAATCCGc       >  1:9734677‑M1/6‑35 (MQ=255)
                              aaccCCGCCAGAAATCAGGGCAAAGATAATCCGCa      >  1:2840900‑M1/5‑35 (MQ=255)
                              aaaaCCGCCAGAAATCAGGGCAAAGATAATCCGCa      >  1:4064340/1‑35 (MQ=255)
                              aaaaCCGCCAGAAATCAGGGCAAAGATAATCCGCa      >  1:2850709/1‑35 (MQ=255)
                               cccCCGCCAGAAATCAGGGCAAAGATAATCCGCAt     >  1:7574261‑M1/4‑35 (MQ=255)
                               cccCCGCCAGAAATCAGGGCAAAGATAATCCGCAt     >  1:15827481‑M1/4‑35 (MQ=255)
                               cccCCGCCAGAAATCAGGGCAAAGATAATCCGCAt     >  1:10260297‑M1/4‑35 (MQ=255)
                               aaaCCGCCAGAAATCAGGGCAAAGATAATCCGCAt     >  1:17117663/1‑35 (MQ=255)
                                ccCCGCCAGAAATCAGGGCAAAGATAATCCGCAtt    >  1:689295‑M1/3‑35 (MQ=255)
                                ccCCGCCAGAAATCAGGGCAAAGATAATCCGCAtt    >  1:5973977‑M1/3‑35 (MQ=255)
                                ccCCGCCAGAAATCAGGGCAAAGATAATCCGCAtt    >  1:17528658‑M1/3‑35 (MQ=255)
                                acCCGCCAGAAATCAGGGCAAAGATAATCCGCAtt    >  1:5863941‑M1/3‑35 (MQ=255)
                                 tCCGCCAGAAATCAGGGCAAAGATAATCCGCATTc   >  1:9482652‑M1/2‑35 (MQ=255)
                                 cCCGCCAGAAATCAGGGCAAAGATAATCCGCATTc   >  1:894536‑M1/2‑35 (MQ=255)
                                 aCCGCCAGAAATCAGGGCAAAGATAATCCGCATTc   >  1:17175200/1‑35 (MQ=255)
                                 aCCGCCAGAAATCAGGGCAAAGATAATCCGCATTc   >  1:14569001/1‑35 (MQ=255)
                                 aCCGCCAGAAATCAGGGCAAAGATAATCCGCATTc   >  1:1421930/1‑35 (MQ=255)
                                  CCGCCAGAAATCAGGGCACAGATAATCCGCATTcc  >  1:4094057‑M1/1‑35 (MQ=255)
                                  CCGCCAGAAATCAGGGCAAAGATAATCCGCATTcc  >  1:19418547‑M1/1‑35 (MQ=255)
                                  CCGCCAGAAATCAGGGCAAAGATAATCCGCATTcc  <  1:1795032‑M1/35‑1 (MQ=255)
                                  |                                  
GGAAAGGGTCAGACAGCTTGCACCCTGAATAAAACCGCCAGAAATCAGGGCAAAGATAATCCGCATTCC  >  REL606/293703‑293771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.