New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1286708 =97 (0.940)10 (0.120) 4/40 NT 12.7% intergenic (+32/‑151) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein
?REL606 = 4391784 57 (0.670)coding (602/1164 nt) yjfC predicted synthetase/amidase

Only 100 of 276 total aligned reads displayed.

TAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGT  >  REL606/1286674‑1286742
                                  |                                   
tgcaggactgcgcccagcaggcagggcaggagtcg                                     >  1:2422661‑M1/35‑35 (MQ=255)
tgcaggactgcgcccagcaggcagggcaggagtcg                                     <  1:12023188‑M1/1‑1 (MQ=255)
tAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg                                     >  1:15885304/1‑35 (MQ=255)
tAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg                                     <  1:1383912/35‑1 (MQ=255)
gtgcatggcaagcgaatgaatatgccgtggtgggg                                     >  1:10905641‑M1/34‑35 (MQ=255)
gggcatggcaagcgaatgaatatgccgtggtgggg                                     >  1:5727569‑M1/34‑35 (MQ=255)
gggcatggcaagcgaatgaatatgccgtggtgggg                                     >  1:278628‑M1/34‑35 (MQ=255)
gggcatggcaagcgaatgaatatgccgtggggggg                                     <  1:5468912‑M1/2‑1 (MQ=255)
cgagataggccgccagaaccagttgttgcgtaagg                                     <  1:16854641‑M1/2‑1 (MQ=255)
cgagataggccgccagaaccagttgttgcgtaagg                                     <  1:7478268‑M1/2‑1 (MQ=255)
cgagataggccgccagaaccagttgttgcgtaagg                                     <  1:6313201‑M1/2‑1 (MQ=255)
cgagataggccgccagaaccagttgttgcgtaagg                                     <  1:10502726‑M1/2‑1 (MQ=255)
 ggcatggcaagcgaatgaatatgccgtggtggggg                                    <  1:15679843‑M1/3‑2 (MQ=255)
 ggcatggcaagcgaatgaatatgccgtggtggGGc                                    >  1:10402864‑M1/33‑35 (MQ=255)
 ggcatggcaagcgaatgaatatgccgtgggggGGc                                    <  1:20061223‑M1/3‑1 (MQ=255)
 gcaggactgcgcccagccggcagggcaggagtcgc                                    >  1:6553372‑M1/34‑35 (MQ=255)
 gcaggactgcgcccagcaggcagggcaggagtcgc                                    >  1:11765298‑M1/34‑35 (MQ=255)
 gcaggactgcgcccagcaggcagggcaggaggcgc                                    <  1:1440148‑M1/2‑1 (MQ=255)
 gagataggccgccagaaccagttgttgcgtaaGGc                                    <  1:6980097‑M1/3‑1 (MQ=255)
 aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                    <  1:18958224/35‑1 (MQ=255)
 aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                    <  1:19886127/35‑1 (MQ=255)
 aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                    <  1:2011435/35‑1 (MQ=255)
  gcatggcaagcgaatgaatatgccgtggtggGGCg                                  <  1:13694134‑M1/4‑1 (MQ=255)
  gcatggcaagcgaatgaatatgccgtggtggGGCg                                  <  1:9304104‑M1/4‑1 (MQ=255)
  gcatggcaagcgaatgaatatgccgtggtggGGCg                                  >  1:10393057‑M1/32‑35 (MQ=255)
  gcatggcaagcgaatgaatatgccgtgatggGGCg                                  <  1:1477044‑M1/4‑1 (MQ=255)
  gcatggcaagcgaatgaatatgcagtggtggGGCg                                  >  1:3623268‑M1/32‑35 (MQ=255)
  caggactgcgcccagcaggcagggcaggagtcgcg                                  >  1:1664678‑M1/33‑35 (MQ=255)
  caggactgcgcccagcaggcagggcaggagtcgcg                                  >  1:12858408‑M1/33‑35 (MQ=255)
  caggactgcgcccagcaggcagggcaggagtcgcg                                  >  1:15139332‑M1/33‑35 (MQ=255)
  caggactgcgcccagcaggcagggcaggagtcgcg                                  <  1:12648509‑M1/3‑1 (MQ=255)
  agataggccgccagaaccagttgttgcgtaaGGCg                                  >  1:11217958‑M1/32‑35 (MQ=255)
  aGCGAATTTTAGTTCACATAGACCCTGCTTcggcg                                  >  1:4423726/1‑35 (MQ=255)
   gataggccgccagaaccagttgttgcgtaaGGCgg                                 <  1:16554‑M1/5‑1 (MQ=255)
   gatagcccgccagaaccagttgttgcgtaaGGCgg                                 >  1:4185554‑M1/31‑35 (MQ=255)
   catggcaagcgaatgaatatgccgtggtggGGCgg                                 >  1:4881117‑M1/31‑35 (MQ=255)
   aggactgcgcccagcaggcagggcaggagtcGCgg                                 <  1:5331845‑M1/4‑1 (MQ=255)
    atggcaagcgaatgaatatgccgtggtggGGCggg                                <  1:11601082‑M1/6‑1 (MQ=255)
    atggcaagcgaatgaatatgccgtggtggGGCggg                                <  1:18527477‑M1/6‑1 (MQ=255)
     tggcaagcgaatgaatatgccgtggtggGGCgggg                               <  1:13277681‑M1/7‑1 (MQ=255)
     tggcaagcgaatgaatatgccgtggtggGGCgggg                               <  1:13391104‑M1/7‑1 (MQ=255)
     tggcaagcgaatgaatatgccgtggtggGGCgggg                               <  1:8602864‑M1/7‑1 (MQ=255)
      actgcgcccagcaggcagggcaggagtcGCGGGGt                              <  1:5059445‑M1/7‑1 (MQ=255)
      actgcgcccagcaggcagggcaggagtcGCGGGGt                              <  1:6735293‑M1/7‑1 (MQ=255)
      aaTTTTAGTTCACATAGACCCTGCTTCGGCGGGGt                              <  1:20594066/35‑1 (MQ=255)
       ggccgccagaaccagttgttgcgtaaGGCGGGGtt                             <  1:6858154‑M1/9‑1 (MQ=255)
       gcaagcgaatgaatatgccgtggtggGGCGGGGtt                             <  1:14274986‑M1/9‑1 (MQ=255)
       ctgcgcccagcaggcagggcaggagtcgcgggggt                             <  1:2160901‑M1/8‑3 (MQ=255)
       aTTTTAGTTCACATAGACCCTGCTTCGGCtggggt                             >  1:10054941/1‑33 (MQ=37)
       aTTTTAGTTCACATAGACCCTGCTTCGGCGGGGtt                             <  1:5834969/35‑1 (MQ=255)
        caagcgaatgaatatgccgtggtggggcgggggtt                            <  1:8449417‑M1/10‑4 (MQ=255)
        caagcgaatgaatatgccgtggtggggcggggggg                            <  1:567106‑M1/10‑4 (MQ=255)
         tttAGTTCACATAGACCCTGCTTCGGCGGGGgttt                           >  1:7194217/1‑35 (MQ=255)
         aagcgaatgaatatgccgtggtggGGCGGGgtttg                           <  1:10717920‑M1/11‑2 (MQ=255)
           tAGTTCACATAGACCCTGCTTCGGCTGGGgttttt                         >  1:8291697/1‑35 (MQ=37)
           gcccagcaggcagggcaggagtcGCGGGGtgtttt                         <  1:8241798‑M1/12‑1 (MQ=255)
            cgaatgaatatgccgtggtggGGCGGGGttttttt                        <  1:16936278‑M1/14‑1 (MQ=255)
            ccagaaccagttgttgcgtaaGGCGGggtttttct                        <  1:4366621‑M1/14‑3 (MQ=255)
            ccagaaccagttgttgcgtaaGGCGGGGttttttt                        <  1:3839295‑M1/14‑1 (MQ=255)
            aGTTCACATAGACCCTGCTTCGGCGGGGgtttttt                        >  1:15609287/1‑35 (MQ=255)
             gTTCACATAGACCCTGCTTCTGCGGGGTTTTTTTa                       >  1:7554772/1‑35 (MQ=255)
             ccagcaggcagggcaggagtcGCGGggttttttct                       <  1:11033184‑M1/14‑3 (MQ=255)
             cagaaccagttgttgcgtaaGGCGgggtttttctt                       <  1:10246583‑M1/15‑4 (MQ=255)
             cagaaccagttgttgcgtaaGGCGGGgtttttttt                       <  1:9088719‑M1/15‑2 (MQ=255)
              ttCACATAGACCCTGCTTCGGCGGGGTTTTTTTAt                      <  1:17706267/35‑1 (MQ=255)
              cagcaggcagggcaggagtcGCGgggttttttcct                      <  1:7757426‑M1/15‑4 (MQ=255)
              cagcaggcagggcaggagtcGCGGggtttttttct                      <  1:5256519‑M1/15‑3 (MQ=255)
               tCACATAGACCCTGCTTCGGCGGGGgttttttttt                     >  1:9604369/1‑32 (MQ=25)
               tCACATAGACCCTGCTTCGGCGGGGTTTTTTTATg                     <  1:15448597/35‑1 (MQ=255)
               tCACATAGACCCTGCTTCGGCGGGGGTTTTTTATg                     >  1:9741248/1‑35 (MQ=255)
                cacaTAGACCCTGCTTCGGCGGGGTTTTTTTATgg                    <  1:2246910/35‑1 (MQ=255)
                cacaTAGACCCTGCTTCGGCGGGGTTTTTTTATgg                    <  1:17634604/35‑1 (MQ=255)
                aaccagttgttgcgtaaGGCGGGGTTTTtttacgg                    <  1:12388186‑M1/18‑4 (MQ=255)
                 acaTAGACCCTGCTTCGGCGGGGTTTTTTTATggg                   <  1:4068029/35‑1 (MQ=255)
                 acaTAGACCCTGCTTCGGCGGGGTTTTTTTATggg                   <  1:1386699/35‑1 (MQ=255)
                  caTAGACCCTGCTTCGGCGGGGTTTTTTTATGGGc                  <  1:5994723/35‑1 (MQ=255)
                  caTAGACCCTGCTTCGGCGGGGGTTTTTTTTGGGc                  >  1:2918338/1‑35 (MQ=25)
                   aTAGACCCTGCTTCGGCGGGGGTTTTTTTTTggga                  >  1:8820749/1‑34 (MQ=18)
                   aTAGACCCTGCTTCGGCGGGGGTTTTTTTTTGGCa                 >  1:16071287/1‑35 (MQ=18)
                   aTAGACCCTGCTTCGGCGGGGGTTTTTTTTTGGCa                 >  1:18048641/1‑35 (MQ=18)
                    tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc                <  1:19426065/35‑1 (MQ=255)
                    tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc                <  1:19211715/35‑1 (MQ=255)
                    tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc                <  1:8998668/35‑1 (MQ=255)
                     aGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACg               <  1:4780038/35‑1 (MQ=255)
                     aGACCCTGCTTCGGCGGGGGTTTTTTATTGGGACg               >  1:15991613/1‑35 (MQ=21)
                     aGACCCTGCTTCGGCGGGGGCTTTTTTTTGGCACg               >  1:13209086/1‑35 (MQ=16)
                      gACCCTGCTTCGGCGGGGTTTTTTTATGGGCACgg              <  1:18429771/35‑1 (MQ=255)
                      gACCCTGCTTCGGCGGGGTTTTTTTATGGGCACgg              <  1:4913605/35‑1 (MQ=255)
                      gACCCTGCTTCGGCGGGGGTTTTTTATTGGGACgg              >  1:20335957/1‑35 (MQ=21)
                       aCCCTGCTTCGGCGGGGGTTTTTTATGGGCACggg             >  1:16968563/1‑34 (MQ=255)
                       aCCCTGCTTCGGCGGGGGTTTTTTATGGGCACggg             >  1:8027447/1‑34 (MQ=255)
                        cccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTg            <  1:1734396/35‑1 (MQ=255)
                        cccTGCTTCGGCGGGGGTTTTTTTTGGGCACgggg            >  1:7257712/1‑33 (MQ=25)
                         ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGc           <  1:12160128/35‑1 (MQ=255)
                          cTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCg          <  1:1496796/35‑1 (MQ=255)
                          cTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCg          <  1:2380369/35‑1 (MQ=255)
                            gCTTCGGCGGTGTTTTTTTATGGGCACGGTGCggg        <  1:1968444/35‑1 (MQ=255)
                              ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGt      <  1:15257237/35‑1 (MQ=255)
                                cggcggGGTTTTTTTATGGGCACGGTGCGGGGTGa    <  1:15079076/35‑1 (MQ=255)
                                 GGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAg   >  1:18211800‑M1/1‑35 (MQ=255)
                                  |                                   
TAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGT  >  REL606/1286674‑1286742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.