New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 68136568 (0.660)10 (0.180) 3/26 NT 18.0% intergenic (‑93/+304) asnB/nagD asparagine synthetase B/UMP phosphatase
?REL606 = 2930921 54 (0.970)coding (734/744 nt) ygfF predicted NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain

Only 100 of 179 total aligned reads displayed.

CCGCAAAGCAGCACTGTGCGCAAGCGATTTGGCGGTGAAAAAATAAAAAACGTAATGGTGATTGTCGAT  >  REL606/681331‑681399
                                  |                                  
ccGCAAAGCAGCACTGTGTGCAAGCGATTTGGCGG                                    <  1:1464039‑M1/35‑1 (MQ=255)
ccGCAAAGCAGCACTGTGCGCAAGCGATTTGGCGG                                    <  1:19833503‑M1/35‑1 (MQ=255)
ccGCAAAGCAGCACTGTGCGCAAGCGATTTGGCGG                                    >  1:2429203‑M1/1‑35 (MQ=255)
ccGCAAAGCAGCACTGTGCGCAAGCGATTTGGCGG                                    >  1:397497‑M1/1‑35 (MQ=255)
 cGCAAAGCAGCACTGTGCGCAAGCGATTTGGCGGt                                   >  1:2133181/1‑35 (MQ=255)
 cGCAAAGCAGCACTGTGCGCAAGCGATTTGGCGGg                                   >  1:793290‑M1/1‑34 (MQ=255)
  gCAAAGCAGCACTGTTCGCAAGCGATTTGGCGGgg                                  >  1:15447351‑M1/1‑33 (MQ=255)
  gCAAAGCAGCACTGTGCGCAAGCGATTTGGCGGTg                                  <  1:15787446/35‑1 (MQ=255)
  gCAAAGCAGCACTGTGCGCAAGCGATTTGGCGGTg                                  <  1:4246286/35‑1 (MQ=255)
   cAAAGCAGCACTGTGCGCAAGCGATTTTGCGGTGa                                 >  1:13055216/1‑35 (MQ=255)
   cAAAGCAGCACTGTGCGCAAGCGATTTGGCGGggg                                 >  1:4156539‑M1/1‑32 (MQ=255)
    aaaGCAGCACTGTGCGCAAGCGATTTGGCGGgggg                                >  1:19401142‑M1/1‑31 (MQ=255)
    aaaGCAGCACTGTGCGCAAGCGATTTGGCGGggga                                >  1:7075133‑M1/1‑31 (MQ=255)
    aaaGCAGCACTGTGCGCAAGCGATTTGGCGGTGaa                                <  1:17518240/35‑1 (MQ=255)
    aaaGCAGCACTGTGCGCAAGCGATTTGGCGGTGaa                                <  1:3855332/35‑1 (MQ=255)
    aaaGCAGCACTGTGCGCAAGCGATTTGGCGGTGaa                                <  1:11059752/35‑1 (MQ=255)
     aaGCAGCACTGTGCGCAAGCGATTTGGCGGTGaaa                               <  1:4702744/35‑1 (MQ=255)
      agcagcACTGTGCGCAAGCGATTTGGCGGgggggg                              >  1:12989173‑M1/1‑29 (MQ=255)
      agcagcACTGTGCGCAAGCGATTTGGCGGggggga                              >  1:2608121‑M1/1‑29 (MQ=255)
      agcagcACTGTGCGCAAGCGATTTGGCGGggggga                              >  1:8372325‑M1/1‑29 (MQ=255)
      agcagcACTGTGCGCAAGCGATTTGGCGGTGaaaa                              <  1:3167344/35‑1 (MQ=255)
       gcagcaCTGTGCGCAAGCGATTTGGCGGTGaaaaa                             <  1:19975279/35‑1 (MQ=255)
       gcagcaCTGTGCGCAAGCGATTTGGCGGTGaaaaa                             <  1:7510096/35‑1 (MQ=255)
       gcagcaCTGTGCGCAAGCGATTTGGCGGTGaaaaa                             <  1:16988600/35‑1 (MQ=255)
        cagcaCTGTGCGCAGGCGATTTCGCGGTGaaaaaa                            >  1:10298682/1‑35 (MQ=37)
        cagcaCTGTGCGCAAGCGATTTGGCGGTGaaaaaa                            <  1:12074539/35‑1 (MQ=255)
        cagcaCTGTGCGCAAGCGATTTGGCGGTGaaaaaa                            <  1:18419654/35‑1 (MQ=255)
        cagcaCTGTGCGCAAGCGATTTGGCGGGGgaaaaa                            >  1:11045365/1‑35 (MQ=38)
         agcaCTGTGCGCAAGCGATTTGGCGGTGAAAAAAt                           <  1:19071296/35‑1 (MQ=255)
         agcaCTGTGCGCAAGCGATTTGGCGGTGAAAAAAt                           <  1:2979901/35‑1 (MQ=255)
         agcaCTGTGCGCAAGCGATTTGGCGGTGAAAAAAt                           <  1:3363378/35‑1 (MQ=255)
           caCTGTGCGCAAGCGATTTGGCGGTGAAAAAATaa                         <  1:7052929/35‑1 (MQ=255)
           caCTGTGCGCAAGCGATTTGGCGGTGAAAAAATaa                         <  1:6342933/35‑1 (MQ=255)
           caCTGTGCGCAAGCGATTTGGCGGTGAAAAAATaa                         <  1:8677650/35‑1 (MQ=255)
            aCTGTGCGCAAGCGATTTGGCGGTGAAAAAATaaa                        <  1:909509/35‑1 (MQ=255)
            aCTGTGCGCAAGCGATTTGGCGGTGAAAAAATaaa                        <  1:19257581/35‑1 (MQ=255)
            aCTGTGCGCAAGCGATTTGGCGGGGGGAAAAAaaa                        >  1:13763342/1‑35 (MQ=16)
            aCTGTGCGCAAGCGATTTGGCGGGGGGAAAAAaaa                        >  1:9792030/1‑35 (MQ=16)
             cTGTGCGCAAGCGATTTGGCGGTGAAAAAATaaaa                       <  1:5412072/35‑1 (MQ=255)
             cTGTGCGCAAGCGATTTGGCGGTGAAAAAATaaaa                       <  1:17082181/35‑1 (MQ=255)
             cTGTGCGCAAGCGATTTGGCGGGGGGAAAAAaaaa                       >  1:4744101/1‑35 (MQ=16)
             cTGTGCGCAAGCGATTTGGCGGGGGGAAAAAaaaa                       >  1:5528559/1‑35 (MQ=16)
              tgtgCGCAAGCGATTTGGCGGGGGAGAAAAaaaaa                      >  1:18643611/1‑35 (MQ=16)
               gtgCGCAAGCGATTTGGCGGTGAAAAAATaaaaaa                     <  1:10822458/35‑1 (MQ=255)
               gtgCGCAAGCGATTTGGCGGTGAAAAAATaaaaaa                     <  1:15042816/35‑1 (MQ=255)
               gtgCGCAAGCGATTTGGCGGGGGGGAAAAaaaaaa                     >  1:8038743/1‑35 (MQ=2)
               gtgCGCAAGCGATTTGGCGGGGGGAAAAAaaaaaa                     >  1:5406855/1‑35 (MQ=16)
               gtgCGCAAGCGATTTGGCGGGGGGAAAAAaaaaaa                     >  1:2366458/1‑35 (MQ=16)
                   gcAAGCGATTTGGCGGTGGAAAAATAAAAAACGTa                 <  1:19385547/35‑1 (MQ=255)
                   gcAAGCGATTTGGCGGTGAAAAAATAAAAAACGTa                 <  1:13403087/35‑1 (MQ=255)
                   gcAAGCGATTTGGCGGTGAAAAAATAAAAAACGTa                 <  1:3170817/35‑1 (MQ=255)
                   gcAAGCGATTTGGCGGTGAAAAAATAAAAAACGTa                 <  1:20415235/35‑1 (MQ=255)
                    cAAGCGATTTGGCGGTGAAAAAATAAAAAACGTaa                <  1:5840263/35‑1 (MQ=255)
                    cAAGCGATTTGGCGGTGAAAAAATAAAAAACGTaa                <  1:9561127/35‑1 (MQ=255)
                     aaGCGATTTGGCGGTGAAAAAATAAAAAACGTAAt               <  1:18198238/35‑1 (MQ=255)
                        cGATTTGGCGGgcgggaaataaaacagggaagttg            >  1:10054934‑M1/1‑11 (MQ=255)
                        cGATTTGGCGGgcgggaaataaaacagggaagttg            <  1:7627808‑M1/35‑25 (MQ=255)
                        cGATTTGGCGGgcgggaaataaaacagggaagttg            <  1:12310670‑M1/35‑25 (MQ=255)
                        cGATTTGGCGGgcgggaaataaaacagggaagttg            <  1:6492384‑M1/35‑25 (MQ=255)
                        cGATTTGGCGGgcgggaaataaaacagggaagttg            <  1:17870136‑M1/35‑25 (MQ=255)
                        cGATTTGGCGGTGAAAAAATAAAAAACGTAATGGt            <  1:4873001/35‑1 (MQ=255)
                         gATTTGGCGGgcgggaaataaaacagggaagttgt           <  1:6302926‑M1/35‑26 (MQ=255)
                         gATTTGGCGGTGAAAAAATAAAAAACGTAATGGTg           <  1:18444610/35‑1 (MQ=255)
                         gATTTGGCGGTGAAAAAATAAAAAACGTAATGGTg           <  1:16274411/35‑1 (MQ=255)
                          aTTTGGCGGgcgggaaataaaacagggaagttgtc          >  1:15953545‑M1/1‑9 (MQ=255)
                          aTTTGGCGGgcgggaaataaaacagggaagttgtc          <  1:9029545‑M1/35‑27 (MQ=255)
                          aTTTGGCGGgcgggaaataaaacagggaagttgtc          >  1:3099795‑M1/1‑9 (MQ=255)
                          aTTTGGCGGgcgggaaataaaacagggaagttgtc          >  1:10129608‑M1/1‑9 (MQ=255)
                           tttGGCGGgcgggaaataaaacagggaagttgtct         <  1:11726503‑M1/35‑28 (MQ=255)
                            ttGGCGGgcgggaaataaaacagggaagttgtctg        <  1:19649537‑M1/35‑29 (MQ=255)
                            ttGGCGGTGAAAAAATAAAAAACGTAATGGTGAtt        <  1:7702442/35‑1 (MQ=255)
                            ttGGCGGTGAAAAAATAAAAAACGTAATGGTGAtt        <  1:17474986/35‑1 (MQ=255)
                             tGGCGGTGAAAAAATAAAAAACGTAATGGTGATTg       <  1:9841325/35‑1 (MQ=255)
                             tGGCGGTGAAAAAATAAAAAACGTAATGGTGATTg       <  1:8208993/35‑1 (MQ=255)
                              ggcgggcgggaaataaaacagggaagttgtctgac      <  1:899658‑M1/35‑31 (MQ=255)
                              ggcgggcgggaaataaaacagggaagttgtctgac      >  1:17253847‑M1/1‑5 (MQ=255)
                              ggcgggcgggaaataaaacagggaagttgtctgac      >  1:18296313‑M1/1‑5 (MQ=255)
                              ggCGGTGAAAAAATAAAAAACGTAATGGTGATTGt      <  1:13188213/35‑1 (MQ=255)
                              ggCGGTGAAAAAATAAAAAACGTAATGGTGATTGt      <  1:8835481/35‑1 (MQ=255)
                              ggCGGTGAAAAAATAAAAAACGTAATGGTGATTGt      <  1:8776549/35‑1 (MQ=255)
                               gcgggcgggaaataaaacagggaagttgtctgacc     <  1:14013510‑M1/35‑32 (MQ=255)
                               gcgggcgggaaataaaacagggaagttgtctgaac     >  1:3327609‑M1/1‑4 (MQ=255)
                               gCGGTGAAAAAATAAAAAACGTAATGGTGATTGTc     <  1:14543864/35‑1 (MQ=255)
                               gCGGTGAAAAAATAAAAAACGTAATGGTGATTGTc     <  1:4973952/35‑1 (MQ=255)
                               gCGGTGAAAAAATAAAAAACGTAATGGTGATTGTc     >  1:6143519/1‑35 (MQ=255)
                               gCGGTGAAAAAATAAAAAACGTAATGGTGATTGTc     <  1:6795962/35‑1 (MQ=255)
                                cGGTGAAAAAATAAAAAACGTAATGGTGATTGTCg    >  1:2027347/1‑35 (MQ=255)
                                cGGTGAAAAAATAAAAAACGTAATGGTGATTGTCg    <  1:13548753/35‑1 (MQ=255)
                                 gggcgggaaataaaacagggaagttgtctgacctg   >  1:19077827‑M1/1‑2 (MQ=255)
                                 gggcgggaaataaaacagggaagttgtctgaccgg   >  1:4516417‑M1/1‑2 (MQ=255)
                                 gggcgggaaataaaacagggaagttgtctgaccgg   <  1:14989496‑M1/35‑34 (MQ=255)
                                 ggTGAAAAAATAAAAAACGTAATGGTGATTGTCGa   <  1:3664065/35‑1 (MQ=255)
                                 ggTGAAAAAATAAAAAACGTAATGGTGATTGTCGa   <  1:2544854/35‑1 (MQ=255)
                                 ggTGAAAAAATAAAAAACGTAATGGTGATTGTCGa   <  1:19297038/35‑1 (MQ=255)
                                  ggcgggaaataaaacagggaagttgtctgaccgga  <  1:8743240‑M1/35‑35 (MQ=255)
                                  ggcgggaaataaaacagggaagttgtctgaccgga  >  1:1649291‑M1/1‑1 (MQ=255)
                                  ggcgggaaataaaacagggaagttgtctgaccgga  >  1:14284502‑M1/1‑1 (MQ=255)
                                  ggcgggaaataaaacagggaagttgtctgaccgga  >  1:2162205‑M1/1‑1 (MQ=255)
                                  gTGAAAAAATAAAAAACGTAATGGTGATTGTCGAt  >  1:9108404/1‑35 (MQ=255)
                                  gTGAAAAAATAAAAAACGTAATGGTGATTGTCGAt  <  1:17248875/35‑1 (MQ=255)
                                  |                                  
CCGCAAAGCAGCACTGTGCGCAAGCGATTTGGCGGTGAAAAAATAAAAAACGTAATGGTGATTGTCGAT  >  REL606/681331‑681399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.