New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3741965 | NA (NA) | 80 (0.780) | 37/48 | NT | 93.0% | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 3742143 = | 6 (0.060) | pseudogene (223/405 nt) | waaT | UDP‑galactose:(Glucosyl) LPS alpha1,2‑galactosyltransferase WaaT |
ACTAAATCAGTAAGTTGGCAGCATCACCGAATGTTGAGGCGTTTTGCACATGCCGCCTGAGT > REL606/3741938‑3741999 | acTAAATCAGTAAGTTGGCAGCATCACCGAATGtt < 1:1053844/35‑1 (MQ=40) aaTCAGTAAGTTGGCAGCATCACCGAATGTTGAgg < 1:41399/35‑1 (MQ=255) gcaTCACCGAATGTTGAGGCGTTTTGCACATgccg < 1:6440523/35‑1 (MQ=255) gcaTCACCGAATGTTGAGGCGTTTTGCACATgccg > 1:8514773/1‑35 (MQ=255) cGAATGTTGAGGCGTTTTGCACATGCCGCCTGAGt < 1:5324969/35‑1 (MQ=255) | ACTAAATCAGTAAGTTGGCAGCATCACCGAATGTTGAGGCGTTTTGCACATGCCGCCTGAGT > REL606/3741938‑3741999 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |