Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 4017655–4017755 4017997–4017764 10–343 52 [41] [46] 52 rrlA 23S ribosomal RNA

TTGCTCGTGGAGCTGAAATCAGTCGAAGATACCAGCTGGCT  >  REL606/4017620‑4017660
                                  |      
ttGCTCGTGGAGCTGAAATCAGTCGAAGATACCAg        <  1:10795278/35‑1 (MQ=255)
ttGCTCGTGGAGCTGAAATCAGTCGAAGATACCAg        >  1:19600037/1‑35 (MQ=255)
ttGCTCGTGGAGCTGAAATCAGTCGAAGATACCAg        <  1:9514111/35‑1 (MQ=255)
ttGCTCGTGGAGCTGAAATCAGTCGAAGATACCAg        >  1:1916916/1‑35 (MQ=255)
ttGCTCGTGGAGCTGAAATCAGTCGAAGATACCAg        >  1:9291024/1‑35 (MQ=255)
ttGCTCGTGGAGCTGAAATCAGTCGAAGATACCAg        >  1:15489503/1‑35 (MQ=255)
ttGCTCGTGGAGCTGAAATCAGTCGAAGATACCAg        >  1:4024388/1‑35 (MQ=255)
ttGCTCGTGGAGCTGAAATCAGTCGAAGATACCAg        <  1:3960828/35‑1 (MQ=255)
ttGCTCGTGGAGCTGAAATCAGTCGAAGATACCAg        >  1:2586853/1‑35 (MQ=255)
ttGCTCGTGGAGCTGAAATCAGTCGAAGATACCAg        <  1:8284062/35‑1 (MQ=255)
ttGCTCGTGGAGCTGAAATCAGTCGAAGATACCAg        >  1:2087228/1‑35 (MQ=255)
 tGCTCGTGGAGCTGAAATCAGTCGAAGATACCAgc       >  1:17199500/1‑35 (MQ=255)
 tGCTCGTGGAGCTGAAATCAGTCGAAGATACCAgc       <  1:15768279/35‑1 (MQ=255)
 tGCTCGTGGAGCTGAAATCAGTCGAAGATACCAgc       <  1:7091608/35‑1 (MQ=255)
 tGCTCGTGGAGCTGAAATCAGTCGAAGATACCAgc       >  1:8193738/1‑35 (MQ=255)
 tGCTCGTGGAGCTGAAATCAGTCGAAGATACCAgc       <  1:14642830/35‑1 (MQ=255)
 tGCTCGTGGAGCTGAAATCAGTCGAAGATACCAgc       <  1:45490/35‑1 (MQ=255)
 tGCTCGTGGAGCTGAAATCAGTCGAAGATACCAgc       >  1:11822636/1‑35 (MQ=255)
 tGCTCGTGGAGCTGAAATCAGTCGAAGATACCAgc       <  1:11403605/35‑1 (MQ=255)
  gCTCGTGGAGCTGAAATCAGTCGAAGATACCAgct      <  1:19056997/35‑1 (MQ=255)
  gCTCGTGGAGCTGAAATCAGTCGAAGATACCAgct      >  1:19806729/1‑35 (MQ=255)
  gCTCGTGGAGCTGAAATCAGTCGAAGATACCAgct      <  1:6339234/35‑1 (MQ=255)
  gCTCGTGGAGCTGAAATCAGTCGAAGATACCAgct      <  1:5072580/35‑1 (MQ=255)
  gCTCGTGGAGCTGAAATCAGTCGAAGATACCAgct      <  1:18706726/35‑1 (MQ=255)
  gCTCGTGGAGCTGAAATCAGTCGAAGATACCAgct      <  1:15829814/35‑1 (MQ=255)
  gCTCGTGGAGCTGAAATCAGTCGAAGATACCAgct      <  1:13988510/35‑1 (MQ=255)
   cTCGTGGAGCTGAAATCAGTCGAAGATACCAgctg     <  1:18088886/35‑1 (MQ=40)
   cTCGTGGAGCTGAAATCAGTCGAAGATACCAgctg     >  1:17621287/1‑35 (MQ=40)
   cTCGTGGAGCTGAAATCAGTCGAAGATACCAgctg     <  1:8293441/35‑1 (MQ=40)
   cTCGTGGAGCTGAAATCAGTCGAAGATACCAgctg     <  1:8521239/35‑1 (MQ=40)
    tCGTGGAGCTGAAATCAGTCGAAGATACCAgctgg    >  1:18592443/1‑35 (MQ=38)
    tCGTGGAGCTGAAATCAGTCGAAGATACCAgctgg    <  1:14801771/35‑1 (MQ=38)
    tCGTGGAGCTGAAATCAGTCGAAGATACCAgctgg    <  1:13664110/35‑1 (MQ=38)
     cGTGTAGCTGAAATCAGTCGAAGATACCAgctggc   >  1:6741746/1‑35 (MQ=255)
     cGTGGAGCTGAAATCAGTCGAAGATACGAgctggc   <  1:8173748/35‑1 (MQ=255)
     cGTGGAGCTGAAATCAGTCGAAGATACCAgctggc   >  1:7386323/1‑35 (MQ=35)
     cGTGGAGCTGAAATCAGTCGAAGATACCAgctggc   <  1:938187/35‑1 (MQ=35)
     cGTGGAGCTGAAATCAGTCGAAGATACCAgctggc   <  1:9620871/35‑1 (MQ=35)
     cGTGGAGCTGAAATCAGTCGAAGATACCAgctggc   >  1:2205451/1‑35 (MQ=35)
     cGTGGAGCTGAAATCAGTCGAAGATACCAgctggc   <  1:1515548/35‑1 (MQ=35)
     cGTGGAGCTGAAATCAGTCGAAGATACCAgctggc   <  1:1201053/35‑1 (MQ=35)
      gTGGAGCTGAAATCAGTCGAAGATACCAgctggct  <  1:4945422/35‑1 (MQ=32)
      gTGGAGCTGAAATCAGTCGAAGATACCAgctggct  <  1:20488701/35‑1 (MQ=32)
      gTGGAGCTGAAATCAGTCGAAGATACCAgctggct  <  1:1980715/35‑1 (MQ=32)
      gTGGAGCTGAAATCAGTCGAAGATACCAgctggct  >  1:8055586/1‑35 (MQ=32)
      gTGGAGCTGAAATCAGTCGAAGATACCAgctggct  >  1:1498552/1‑35 (MQ=32)
      gTGGAGCTGAAATCAGTCGAAGATACCAgctggct  >  1:1417239/1‑35 (MQ=32)
      gTGGAGCTGAAATCAGTCGAAGATACCAgctggct  <  1:13906056/35‑1 (MQ=32)
      gTGGAGCTGAAATCAGTCGAAGATACCAgctggct  <  1:12963020/35‑1 (MQ=32)
      gTGGAGCTGAAATCAGTCGAAGATACCAgctggct  <  1:12509238/35‑1 (MQ=32)
      gTGGAGCTGAAATCAGTCGAAGATACCAgctggct  <  1:10649829/35‑1 (MQ=32)
      gTGGAGCTGAAATCAGTCGAAGATACCAgatggct  <  1:13606384/35‑1 (MQ=12)
                                  |      
TTGCTCGTGGAGCTGAAATCAGTCGAAGATACCAGCTGGCT  >  REL606/4017620‑4017660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.