Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 4,110,237 IS150 (–) +3 bp 100% coding (296‑298/2433 nt) metL → bifunctional aspartate kinase II/homoserine dehydrogenase II

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3893554 =NA (NA)139 (1.480) 43/44 NT 100% noncoding (1/1443 nt) IS150 repeat region
?REL606 4110237 = 0 (0.000)coding (296/2433 nt) metL bifunctional aspartate kinase II/homoserine dehydrogenase II
* ? REL606 = 3894996NA (NA)79 (0.770) 28/48 NT 100% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 4110239 0 (0.000)coding (298/2433 nt) metL bifunctional aspartate kinase II/homoserine dehydrogenase II

Only 100 of 350 total aligned reads displayed.

TCTGCTACCCGCTGAAGAAGCCGATAGCCTCATTAGCGCTTTTGTCAGCGATCTGGAACGCCTGGCGGC  >  REL606/4110205‑4110273
                                  |                                  
atttcatcgtccaacaaaatgggtgcagtacaTTa                                    >  1:3268994‑M2/33‑35 (MQ=255)
atttcatcgtccaacaaaatgggtgcagtacaTTa                                    <  1:19709554‑M2/3‑1 (MQ=255)
 tttcatcgtccaacaaaatgggtgcagtgcaTTAg                                   <  1:20318231‑M2/4‑1 (MQ=255)
  ttcatcgtccaacaaaatgggtgcagtacaTTAgc                                  >  1:16253357‑M2/31‑35 (MQ=255)
  ttcatcgtccaacaaaatgggtgcagtacaTTAgc                                  <  1:17983601‑M2/5‑1 (MQ=255)
  ttcatcgtccaacaaaatgggtgcagtacaTTAgc                                  <  1:19901986‑M2/5‑1 (MQ=255)
  ttcatcgtccaacaaaatgggtgcagtacaTTAgc                                  <  1:19822446‑M2/5‑1 (MQ=255)
  ttcatcgtccaacaaaatgggtgcagtacaCTaga                                  >  1:13266848‑M2/31‑34 (MQ=255)
  tGCTACCCGCTGAAGAAGCCGATAGCCTCATTAtg                                  <  1:1610938‑M2/35‑3 (MQ=255)
   tcatcgtccaacaaaatgggtgcagtacaTTAgcg                                 <  1:6759626‑M2/6‑1 (MQ=255)
   tcatcgtccaacaaaatgggtgcagtacaTTAgcg                                 <  1:569383‑M2/6‑1 (MQ=255)
   tcatcgtccaacaaaatgggtgcagtacaTTAgcg                                 <  1:12446919‑M2/6‑1 (MQ=255)
   tcatcgtccaacaaaatgggtgcagtacaTTAgcg                                 <  1:17905722‑M2/6‑1 (MQ=255)
    catcgtccaacaaaatgggtgcagtacaTTAgcgc                                >  1:7252299‑M2/29‑35 (MQ=255)
    catcgtccaacaaaatgggtgcagtacaTTAgcgc                                >  1:6420449‑M2/29‑35 (MQ=255)
    catcgtccaacaaaatgggtgcagtacaTTAgcgc                                <  1:7996399‑M2/7‑1 (MQ=255)
    cTACCCGCTGAAGAAGCCGATAGCCTCATTAtgta                                <  1:5040129‑M2/35‑5 (MQ=255)
     atcgtccaacaaaatgggtgcagtacaTTAGCGCt                               <  1:18814492‑M2/8‑1 (MQ=255)
     atcgtccaacaaaatgggtgcagtacaTTAGCGCt                               <  1:9817614‑M2/8‑1 (MQ=255)
      tcgtccaacaaaatgggtgcagtacaTTAGCGCtt                              >  1:14555206‑M2/27‑35 (MQ=255)
      tcgtccaacaaaatgggtgcagtacaTTAGCGCtt                              <  1:16844177‑M2/9‑1 (MQ=255)
      aCCCGCTGAAGAAGCCGATAGCCTCATTAtgtaat                              <  1:7848991‑M2/35‑7 (MQ=255)
       cgtccaacaaaatgggtgcagtacaTTAGCGCttt                             <  1:9343685‑M2/10‑1 (MQ=255)
       cccGCTGAAGAAGCCGATAGCCTCATTAtgtactg                             <  1:4525125‑M2/35‑8 (MQ=255)
        gtccaacaaaatgggtgcagtacaTTAGCGCtttt                            <  1:10938460‑M2/11‑1 (MQ=255)
        gtccaacaaaatgggtgcagtacaTTAGCGCtttt                            <  1:9201143‑M2/11‑1 (MQ=255)
          gCTGAAGAAGCCGATAGCCTCATTAtgtactgacc                          <  1:3767650‑M2/35‑11 (MQ=255)
          gCTGAAGAAGCCGATAGCCTCATTAtgtactgacc                          <  1:1280119‑M2/35‑11 (MQ=255)
          ccaacaaaatgggtgcagtacaTTAGCGCTTTTGt                          <  1:310928‑M2/13‑1 (MQ=255)
          ccaacaaaatgggtgcagtacaTTAGCGCTTTTGt                          <  1:11780185‑M2/13‑1 (MQ=255)
          ccaacaaaatgggtgcagtacaTTAGCGCTTTTGt                          >  1:10598415‑M2/23‑35 (MQ=255)
            aacaaaatgggtgcagtacaTTAGCGCTTTTGTCa                        <  1:20112862‑M2/15‑1 (MQ=255)
            aacaaaatgggtgcagtacaTTAGCGCTTTTGTCa                        >  1:9254554‑M2/21‑35 (MQ=255)
            aacaaaatgggtgcagtacaTTAGCGCTTTTGTCa                        <  1:11510228‑M2/15‑1 (MQ=255)
            aacaaaatgggtgcagtacaTTAGCGCTTTTGTCa                        >  1:10016796‑M2/21‑35 (MQ=255)
             acaaaatgggtgcagtacaTTAGCGCTTTTGTCAg                       >  1:9626126‑M2/20‑35 (MQ=255)
              caaaatgggtgcagtacaTTAGCGCTTTTGTCAGc                      <  1:1659678‑M2/17‑1 (MQ=255)
              caaaatgggtgcagtacaTTAGCGCTTTTGTCAGc                      <  1:10760017‑M2/17‑1 (MQ=255)
              caaaatgggtgcagtacaTTAGCGCTTTTGTCAGc                      <  1:17429776‑M2/17‑1 (MQ=255)
              aagaagCCGATAGCCTCATTAtgtactgaccccaa                      <  1:10396128‑M2/35‑15 (MQ=255)
               agaagCCGATAGCCTCATTAtgtactgaccccaaa                     <  1:18727009‑M2/35‑16 (MQ=255)
               aaaatgggtgcagtacaTTAGCGCTTTTGTCAGCg                     >  1:12033822‑M2/18‑35 (MQ=255)
               aaaatgggtgcagtacaTTAGCGCTTTTGTCAGCg                     >  1:14758594‑M2/18‑35 (MQ=255)
                gaagCCGATAGCCTCATTAtgtactgaccccaaaa                    <  1:11278868‑M2/35‑17 (MQ=255)
                gaagCCGATAGCCTCATTAtgtactgaccccaaaa                    <  1:4325785‑M2/35‑17 (MQ=255)
                aaatgggtgcagtacaTTAGCGCTTTTGTCAGCGa                    <  1:15433026‑M2/19‑1 (MQ=255)
                aaatgggtgcagtacaTTAGCGCTTTTGTCAGCGa                    >  1:19394638‑M2/17‑35 (MQ=255)
                 aatgggtgcagtacaTTAGCGCTTTTGTCAGCGAt                   <  1:5621057‑M2/20‑1 (MQ=255)
                 aatgggtgcagtacaTTAGCGCTTTTGTCAGCGAt                   <  1:17720839‑M2/20‑1 (MQ=255)
                 aagCCGATATCCTCATTAtgtactgaccccaaaaa                   <  1:9555885‑M2/35‑18 (MQ=255)
                  atgggtgcagtacaTTAGCGCTTTTGTCAGCGATc                  >  1:15620009‑M2/15‑35 (MQ=255)
                  agCCGATAGCCTCATTAtgtactgaccccaaaaag                  <  1:16401521‑M2/35‑19 (MQ=255)
                  agCCGATAGCCTCATTAtgtactgaccccaaaaag                  <  1:11166860‑M2/35‑19 (MQ=255)
                   tgggtgcagtacaTTAGCGCTTTTGTCAGCGATCt                 >  1:18371490‑M2/14‑35 (MQ=255)
                   tgggtgcagtacaTTAGCGCTTTTGTCAGCGATCt                 <  1:14297754‑M2/22‑1 (MQ=255)
                   gCCGATAGCCTCATTAtgtactgaccccaaaaagt                 <  1:19375134‑M2/35‑20 (MQ=255)
                    gggtgcagtacaTTAGCGCTTTTGTCAGCGATCTg                <  1:10487392‑M2/23‑1 (MQ=255)
                    gggtgcagtacaTTAGCGCTTTTGTCAGCGATCTg                <  1:17664621‑M2/23‑1 (MQ=255)
                    gggtgcagtacaTTAGCGCTTTTGTCAGCGATCTg                <  1:4055854‑M2/23‑1 (MQ=255)
                    gggtgcagtacaTTAGCGCTTTTGTCAGCGATCTg                >  1:386052‑M2/13‑35 (MQ=255)
                     cGATAGCCTCATTAtgtactgaccccaaaaagttg               <  1:17121617‑M2/35‑22 (MQ=255)
                     cGATAGCCTCATTAtgtactgaccccaaaaagttg               >  1:135739‑M2/1‑14 (MQ=255)
                      nngcagnacaTTAGCGCTTTTGTCAGCGATCTGGa              <  1:8854100‑M2/25‑1 (MQ=255)
                       ttaGCCTCATTAtgtactgaccccaaaaagttgga             >  1:7731823‑M2/2‑12 (MQ=255)
                       tgcagtacaTTAGCGCTTTTGTCAGCGATCTGGaa             <  1:7566075‑M2/26‑1 (MQ=255)
                       tgcagtacaTTAGCGCTTTTGTCAGCGATCTGGaa             >  1:10647483‑M2/10‑35 (MQ=255)
                       tgcagtacaTTAGCGCTTTTGTCAGCGATCTGGaa             >  1:12976370‑M2/10‑35 (MQ=255)
                       tgcagtacaTTAGCGCTTTTGTCAGCGATCTGGaa             <  1:2374365‑M2/26‑1 (MQ=255)
                        tAGCCTCATTAtgtactgaccccaaaaagttggac            >  1:3478333‑M2/1‑11 (MQ=255)
                        tAGCCTCATTAtgtactgaccccaaaaagttggac            <  1:17009835‑M2/35‑25 (MQ=255)
                        tAGCCTCATTAtgtactgaccccaaaaagttggac            <  1:15030884‑M2/35‑25 (MQ=255)
                        gcagtacaTTAGCGCTTTTGTCAGCGATCTGGAAc            >  1:15148205‑M2/9‑35 (MQ=255)
                         cagtacaTTAGCGCTTTTGTCAGCGATCTGGAACg           <  1:10201347‑M2/28‑1 (MQ=255)
                          gCCTCATTAtgtactgaccccaaaaagttggacag          >  1:19513236‑M2/1‑9 (MQ=255)
                          gCCTCATTAtgtactgacaccaaaaagttggacag          >  1:20378069‑M2/1‑9 (MQ=255)
                           gtacaTTAGCGCTTTTGTCAGCGATCTGGAACGcc         <  1:18204372‑M2/30‑1 (MQ=255)
                            tacaTTAGCGCTTTTGTCAGCGATCTGGAACTCCt        >  1:8664367‑M2/5‑35 (MQ=255)
                            tacaTTAGCGCTTTTGTCAGCGATCTGGAACGCCt        <  1:141754‑M2/31‑1 (MQ=255)
                             acaTTAGCGCTTTTGTCAGCGATCTGGAACGCCTg       <  1:3565239‑M2/32‑1 (MQ=255)
                             acaTTAGCGCTTTTGTCAGCGATCTGGAACGCCTg       >  1:8235257‑M2/4‑35 (MQ=255)
                             acaTTAGCGCTTTTGTCAGCGATCTGGAACGCCTg       <  1:8367379‑M2/32‑1 (MQ=255)
                              caTTAGCGCTTTTGTCAGCGATCTGGAACGCCTgg      >  1:2600911‑M2/3‑35 (MQ=255)
                              cATTAtgtactgaccccaaaaagttggacagttaa      <  1:1585018‑M2/35‑31 (MQ=255)
                              cATTAtgtactgaccccaaaaagttggacagttaa      >  1:5366118‑M2/1‑5 (MQ=255)
                              cATTAtgtactgaccccaaaaagttggacagttaa      <  1:5282535‑M2/35‑31 (MQ=255)
                               aatatgtactgaccccaaaaagttggacagttaaa     <  1:13091003‑M2/33‑32 (MQ=255)
                               aTTAGCGCTTTTGTCAGCGATCTGGAACGCCTGGc     <  1:1944114‑M2/34‑1 (MQ=255)
                                ttAtgtactgaccccaaaaagttggacagttaaac    >  1:7955961‑M2/1‑3 (MQ=255)
                                ttAGCGCTTTTGTCAGCGATCTGGAACGCCTggcg    >  1:13652519/1‑35 (MQ=255)
                                ttAGCGCTTTTGTCAGCGATCTGGAACGCCTggcg    <  1:2706230/35‑1 (MQ=255)
                                ttAGCGCTTTTGTCAGCGATCTGGAACGCCTggcg    <  1:298312/35‑1 (MQ=255)
                                ttAGCGCTTTTGTCAGCGATCTGGAACGCCTggcg    >  1:5866010/1‑35 (MQ=255)
                                 tAtgtactgaccccaaaaagttggacagttaaaca   >  1:14941569‑M2/1‑2 (MQ=255)
                                 tAGCGCTTTTGTCAGCGATCTGGAACGCCTggcgg   >  1:13898101/1‑35 (MQ=255)
                                 tAGCGCTTTTGTCAGCGATCTGGAACGCCTggcgg   >  1:6651425/1‑35 (MQ=255)
                                  atgtactgaccccaaaaagttggacagttaaacac  >  1:12685526‑M2/1‑1 (MQ=255)
                                  atgtactgaccccaaaaagttggacagttaaacac  <  1:2199283‑M2/35‑35 (MQ=255)
                                  atgtactgaccccaaaaagttggacagttaaacac  >  1:13944173‑M2/1‑1 (MQ=255)
                                  atgtactgaccacaaaaagttggacagttaaacac  >  1:6145869‑M2/1‑1 (MQ=255)
                                  aGCGCTTTTGTCAGCGATCTGGAACGCCTggcggg  >  1:12188264/1‑34 (MQ=255)
                                  |                                  
TCTGCTACCCGCTGAAGAAGCCGATAGCCTCATTAGCGCTTTTGTCAGCGATCTGGAACGCCTGGCGGC  >  REL606/4110205‑4110273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.