New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1539621 =78 (0.760)8 (0.100) 4/38 NT 13.6% coding (51/2400 nt) dos cAMP phosphodiesterase, heme‑regulated
?REL606 = 3363882 40 (0.490)coding (771/1290 nt) rrmB 16S rRNA m5C967 methyltransferase, S‑adenosyl‑L‑methionine‑dependent

Only 100 of 212 total aligned reads displayed.

TAATTAACACCGCGCCCATCATATTTTGTTCAAGGGCGGGGAAAAAAATGCCATCGGCGGCATTTTCCG  >  REL606/1539587‑1539655
                                  |                                  
taattaaCACCGCGCCCATCATATTTTGTTCAAgg                                    <  1:18209927/35‑1 (MQ=255)
taattaaCACCGCGCCCATCATATTTTGTTCAAgg                                    >  1:2352345/1‑35 (MQ=255)
gtactgccggtctggactcttcccaggggccaacg                                    <  1:7530472‑M1/1‑1 (MQ=255)
gtactgccgggctggactcttcccaggggccaacg                                    <  1:18951218‑M1/1‑1 (MQ=255)
gtactgccgggctggactcttcccaggggccaacg                                    <  1:9075813‑M1/1‑1 (MQ=255)
cggtgaacacattttggatctttgtgccgcccccg                                    >  1:10368893‑M1/35‑35 (MQ=255)
cggtgaacacattttggatctttgtgccgcccccg                                    >  1:8033970‑M1/35‑35 (MQ=255)
actcttctgcggtcttgcgatgtttgttgtagctg                                    >  1:15745285‑M1/35‑35 (MQ=255)
actcttctgcggtcttgcgatgtttgttgtagctg                                    >  1:19559771‑M1/35‑35 (MQ=255)
 tactgccgggctggactcttcccaggggccaacgg                                   <  1:16391587‑M1/2‑1 (MQ=255)
 ggtgaacacattttggatctttgtgccgcccccgg                                   >  1:4610040‑M1/34‑35 (MQ=255)
 ggtgaacacattttggatctttgtgccgcccccgg                                   <  1:19526442‑M1/2‑1 (MQ=255)
 ctcttctgcggtcttgcgatgtttgttgtagctgg                                   >  1:12931509‑M1/34‑35 (MQ=255)
 ctcttctgcggtcttgcgatgtttgttgtagctgg                                   >  1:17953339‑M1/34‑35 (MQ=255)
 aattaaCACCGCGCCCATCATATTTTGTTCAAggg                                   >  1:11544384/1‑35 (MQ=255)
 aattaaCACCGCGCCCATCATATTTTGTTCAAggg                                   >  1:11275711/1‑35 (MQ=255)
  tcttctgcgttcttgcgatgtttgttgtagctGGc                                  <  1:14425745‑M1/3‑1 (MQ=255)
  tcttctgcggtcttgcgatgtttgttgtagctGGc                                  <  1:15230261‑M1/3‑1 (MQ=255)
  gtgaacacattttggatctttgtgcagcccccggc                                  >  1:5518761‑M1/33‑35 (MQ=255)
  actgccgggctggactcttcccaggggccaacggc                                  >  1:18577446‑M1/33‑35 (MQ=255)
  actgccgggctggactcttcccaggggccaacggc                                  >  1:7419321‑M1/33‑35 (MQ=255)
   ttaaCACCGCGCCCATCATATTTTGTTCAAGGGCg                                 >  1:7689066/1‑35 (MQ=255)
   cttctgcggtcttgcgatgtttgttgtagctGGCg                                 >  1:3948362‑M1/32‑35 (MQ=255)
   ctgccgggctggactcttcccaggggccaacggcg                                 >  1:17040026‑M1/32‑35 (MQ=255)
   ctgccgggctggactcttcccaggggccaacggcg                                 <  1:16554847‑M1/4‑1 (MQ=255)
    ttctgcggtcttgcgatgtttgttgtagctggttg                                <  1:19101916‑M1/5‑4 (MQ=255)
    ttctgcggtcttgcgatgtttgttgtagctGGCgg                                >  1:7213603‑M1/31‑35 (MQ=255)
    tgccgggctggactcttcccaggggccaacggcgg                                >  1:13068981‑M1/31‑35 (MQ=255)
    taaCACCGCGCCCATCATATTTTGTTCAAGGGCgg                                <  1:15678495/35‑1 (MQ=255)
    gaacacattttggatctttgtgccgcccccggcgg                                <  1:18136557‑M1/5‑1 (MQ=255)
     tctgcggtcttgcgatgtttgttgtagctGGCggg                               <  1:12241828‑M1/6‑1 (MQ=255)
     tctgcggtcttgcgatgtttgttgtagctGGCggg                               <  1:16198704‑M1/6‑1 (MQ=255)
     aacacattttggatctttgtgccgcccccGGCggg                               <  1:11898487‑M1/6‑1 (MQ=255)
     aaCACCGCGCCCATCATATTTTGTTCAAGGGCggg                               <  1:8482715/35‑1 (MQ=255)
     aaCACCGCGCCCATCATATTTTGTTCAAGGGCggg                               <  1:17523007/35‑1 (MQ=255)
     aaCACCGCGCCCATCATATTTTGTTCAAGGGCggg                               >  1:1833888/1‑35 (MQ=255)
     aaCACCGAGCCCATCATATTTTGTTCAAGGGCggg                               <  1:1214377/35‑1 (MQ=255)
      ctgcggtcttgcgatgtttgttgtagctGGGgggg                              <  1:11706906‑M1/7‑1 (MQ=255)
      ccgggctggactcttcccaggggccaacGGCgggg                              <  1:2004507‑M1/7‑1 (MQ=255)
      acacCGCGCCCATCATATTTTGTTCAAGGGCgggg                              >  1:3075301/1‑35 (MQ=255)
      acacCGCGCCCATCATATTTTGTTCAAGGGCgggg                              <  1:4459919/35‑1 (MQ=255)
      acacCGCGCCCATCATATTTTGTTCAAGGGCgggg                              >  1:10089225/1‑35 (MQ=255)
       tgcggtcttgcgatgtttgttgtagctGGCGGGGa                             <  1:20335024‑M1/8‑1 (MQ=255)
        gggctggactcttcccaggggccaacGGCGGGGaa                            <  1:13678177‑M1/9‑1 (MQ=255)
        gggctggactcttcccaggggccaacGGCGGGGaa                            <  1:65846‑M1/9‑1 (MQ=255)
        acCGCGCCCATCATATTTTGTTCAAGGGCGGGGaa                            >  1:7913250/1‑35 (MQ=255)
         cggtcttgcgatgtttgttgtagctGGCGGGGaaa                           <  1:19161025‑M1/10‑1 (MQ=255)
         cggtcttgcgatgtttgttgtagctGGCGGGGaaa                           <  1:3719947‑M1/10‑1 (MQ=255)
          ggtcttgcgatgtttgttgtagctGGCGgggacaa                          <  1:5036058‑M1/11‑4 (MQ=255)
          ggtcttgcgatgtttgttgtagctGGCGGGGaaaa                          <  1:6266175‑M1/11‑1 (MQ=255)
          ggtcttgcgatgtttgttgtagctGGCGGGGaaaa                          <  1:410494‑M1/11‑1 (MQ=255)
          ggtcttgcgatgtttgttgtagctGGCGGGGaaaa                          <  1:9391261‑M1/11‑1 (MQ=255)
          cgcgCCCATCATATTTTGTTCAAGGGCGGGGaaaa                          <  1:6995696/35‑1 (MQ=255)
          attttggatctttgtgccgcccccGGCGGGGaaaa                          <  1:2635236‑M1/11‑1 (MQ=255)
           ctggactcttcccaggggccaacGGCGGGGaaaaa                         <  1:2207069‑M1/12‑1 (MQ=255)
            tttggatctttgtgccgcccccGGCGGGGaaaaaa                        <  1:527614‑M1/13‑1 (MQ=255)
            tggactcttcccaggggccaacGGCGgggaaataa                        <  1:17159259‑M1/13‑4 (MQ=255)
            tcttgcgatgtttgttgtagctGGCGGGGaaaaaa                        <  1:2796183‑M1/13‑1 (MQ=255)
            cgcCCATCATATTTTGTTCAAGGGCGGGGaaaaaa                        >  1:2452290/1‑35 (MQ=255)
             ttggatctttgtgccgcccccGGCGGGGaaaaaaa                       <  1:8707507‑M1/14‑1 (MQ=255)
             ggactcttcccaggggccaacGGCGGggaaaaaca                       <  1:13282931‑M1/14‑3 (MQ=255)
             gcCCATCATATTTTGTTCAAGGGCGGGGaaaaaaa                       <  1:17356733/35‑1 (MQ=255)
             gcCCATCATATTTTGTTCAAGGGCGGGGaaaaaaa                       >  1:20457082/1‑35 (MQ=255)
             cttgcgatgtttgttgtagctGGCGGGggaaaaag                       <  1:10754952‑M1/14‑2 (MQ=255)
             cttgcgatgtttgttgtagctGGCGGGGaaaaaaa                       <  1:2843361‑M1/14‑1 (MQ=255)
              ttgcgatgtttgttgtagctGGCGGGgaaaaaaac                      <  1:10951186‑M1/15‑2 (MQ=255)
              gactcttcccaggggccaacGGCGGGGAAAAAAAt                      <  1:16834771‑M1/15‑1 (MQ=255)
              cccATCATATTTTGTTCAAGGGCGGGGAAAAAAAt                      <  1:3990717/35‑1 (MQ=255)
               tgcgatgtttgttgtagctGGCGGggaaaaaaagg                     <  1:14322535‑M1/16‑3 (MQ=255)
               ggatctttgtgccgcccccGGCGGggaaaaaaagc                     <  1:13586159‑M1/16‑3 (MQ=255)
               ccATCATATTTTGTTCAAGGGCTGGGAAAAAAATg                     >  1:20106201/1‑35 (MQ=255)
               actcttcccaggggccaacGGCGGggaaaaaaaat                     <  1:12168449‑M1/16‑3 (MQ=255)
                catcatATTTTGTTCAAGGGCGGGGAAAAAAATGc                    <  1:15199588/35‑1 (MQ=255)
                catcatATTTTGTTCAAGGGCGGGGAAAAAAATGc                    >  1:4248002/1‑35 (MQ=255)
                catcatATTTTGTTCAAGGGCGGGGAAAAAAATGc                    >  1:13455611/1‑35 (MQ=255)
                 atcatATTTTGTTCAATGGCGGGGGAAAAAAAGcc                   >  1:15513426/1‑35 (MQ=25)
                 atcatATTTTGTTCAAGGGCGGGGAAAAAAATGcc                   >  1:19763218/1‑35 (MQ=255)
                   catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                 <  1:6936153/35‑1 (MQ=255)
                   catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                 >  1:13819810/1‑35 (MQ=255)
                   catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                 >  1:9372675/1‑35 (MQ=255)
                   catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                 <  1:16924412/35‑1 (MQ=255)
                   catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                 >  1:19721371/1‑35 (MQ=255)
                   catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                 <  1:17799096/35‑1 (MQ=255)
                   catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                 <  1:9729950/35‑1 (MQ=255)
                     tatTTTGTTCAAGGGCGGGGAAAAAAATGCCATcg               <  1:900841/35‑1 (MQ=255)
                      atTTTGTTCAAGGGCGGGGAAAAAAATGCCATcgg              <  1:8187857/35‑1 (MQ=255)
                       ttttGTTCAAGGGCGGGGAAAAAAATGCCATcggc             >  1:8571228/1‑35 (MQ=255)
                       ttttGTTCAAGGGCGGGGAAAAAAATGCCATcggc             <  1:9699732/35‑1 (MQ=255)
                       ttttGTTCAAGGGCGGGGAAAAAAATGCCATcggc             <  1:13164812/35‑1 (MQ=255)
                        tttGTTCAAGGGCGGGGAAAAAAATGCCATcggcg            >  1:6665817/1‑35 (MQ=255)
                        tttGTTCAAGGGCGGGGAAAAAAATGCCATcggcg            <  1:18742053/35‑1 (MQ=255)
                         ttGTTCAAGGGCGGGGAAAAAAATGCCATcggctg           >  1:17735496/1‑33 (MQ=255)
                         ttGTTCAAGGGCGGGGAAAAAAATGCCATcggcgg           <  1:3517030/35‑1 (MQ=255)
                          tGTTCAAGGGCGGGGAAAAAAATGCCATcggcggg          >  1:14128541/1‑34 (MQ=255)
                          tGTTCAAGGGCGGGGAAAAAAATGCCATcggcggg          >  1:20610411/1‑34 (MQ=255)
                           gTTCAAGGGCGGGGAAAAAAATGCCATcggcgggg         >  1:10201887/1‑33 (MQ=255)
                              cAAGGGCGGGGAAAAAAATGCCATCGGCGGCAttt      <  1:11113177/35‑1 (MQ=255)
                               aaGGGCGGGGAAAAAAATGCCATCGGCGGCAtttt     <  1:14996540/35‑1 (MQ=255)
                                aGGGCGGGGAAAAAAATGCCATCGGCGGCATTTTc    <  1:13983234/35‑1 (MQ=255)
                                  GGCGGGGAAAAAAATGCCATCGGCGGCATTTTCCg  >  1:5736683‑M1/1‑35 (MQ=255)
                                  |                                  
TAATTAACACCGCGCCCATCATATTTTGTTCAAGGGCGGGGAAAAAAATGCCATCGGCGGCATTTTCCG  >  REL606/1539587‑1539655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.