New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1731442 =72 (0.700)7 (0.070) 3/46 NT 11.5% coding (303/627 nt) ydhY predicted 4Fe‑4S ferridoxin‑type protein
?REL606 3480446 = 39 (0.400)coding (628/2394 nt) malP maltodextrin phosphorylase

TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1731476‑1731442
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAGCCGACAACGGGGAGATCCCACGCTTGACCGGT  >  REL606/3480446‑3480479
                                                                     
TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT                                    >  1:8204953/1‑35
TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT                                    >  1:614139/1‑35
TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT                                    >  1:14093766/1‑35
TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT                                    <  1:3055596/35‑1
TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT                                    <  1:15822261/35‑1
TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT                                    <  1:18558130/35‑1
                         ccATTTCTTTAGCCGACAACGGGGAGATCCCACGC           <  1:189624/33‑1
                          cATTACTTTAGCCGACAACGGGGAGATCCCACGCT          <  1:8399918/34‑1
                          TATTTCTTTAGCCGACAACGGGGAGATCCCACGCT          <  1:2379837/35‑1
                           tTTTCTTTAGCCGACAACGGGGAGATCCCACGCTT         <  1:10302034/34‑1
                           ATTTCTTTAGCCGACAACGGGGAGATCCCACGCTT         <  1:8004776/35‑1
                            ttaCTTTAGCCGACAACGGGGAGATCCCACGCTTG        <  1:10701339/32‑1
                            TTTTTTTAGCCGACAACGGGGAGATCCCACGCTTG        <  1:1840389/35‑1
                            TTTGTTTAGCCGACAACGGGGAGATCCCACGCTTG        <  1:7953395/35‑1
                             tagTTTAGCCGACAACGGGGAGATCCCACGCTTGA       <  1:4661173/32‑1
                              tgTTTAGCCGACAACGGGGAGATCCCACGCTTGAC      <  1:14405608/33‑1
                              gtTTTAGCCGACAACGGGGAGATCCCACGCTTGAC      <  1:1937519/33‑1
                              aCTTTAGCCGACAACGGGGAGATCCCACGCTTGAC      <  1:14380300/34‑1
                               tgTTAGCCGACAACGGGGAGATCCCACGCTTGACC     <  1:16597841/33‑1
                                TTTAGCCGACAACGGGGAGATCCCACGCTTGACCG    <  1:11809062/35‑1
                                 gTAGCCGACAACGGGGAGATCCCACGCTTGACCGG   <  1:438862/34‑1
                                 TTAGCCGACAACGGGGAGATCCCACGCTTGACCGG   <  1:15964466/35‑1
                                 TTAGCCGACAACGGGGAGATCCCACGCTTGACCGG   <  1:8289746/35‑1
                                 TTAGCCGACAACGGGGAGATCCCACGCTTGACCGG   <  1:17242474/35‑1
                                  TAGCCGACAACGGGGAGATCCCACGCTTGACCGGT  >  1:3434565/1‑35
                                  TAGCCGACAACGGGGAGATCCCACGCTTGACCGGT  >  1:5241236/1‑35
                                  TAGCCGACAACGGGGAGATCCCACGCTTGACCGGT  >  1:6911070/1‑35
                                  TAGCCGACAACGGGGAGATCCCACGCTTGACCGGT  <  1:8330811/35‑1
                                                                     
TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1731476‑1731442
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAGCCGACAACGGGGAGATCCCACGCTTGACCGGT  >  REL606/3480446‑3480479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.