New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2533712 =95 (0.920)9 (0.130) 3/32 NT 14.4% coding (987/2007 nt) hyfR DNA‑binding transcriptional activator, formate sensing
?REL606 3554407 = 44 (0.640)coding (321/384 nt) yhhH hypothetical protein

CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2533753‑2533712
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggtggGGTTTTTATTATAGAAATAGGCAAAAATGATGGG  >  REL606/3554407‑3554440
                                                                            
CCGATGCCCAGATTCGAAAGGATCTGCTCGCTAAG                                           >  1:13281486/1‑35
CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTTAG                                           >  1:14028252/1‑35
CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAG                                           >  1:10202100/1‑35
CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAG                                           >  1:13773425/1‑35
CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAG                                           <  1:12068967/35‑1
CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAG                                           >  1:9388132/1‑35
CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAG                                           <  1:2904889/35‑1
 CGATGCCCAGATTCGAAAGGAGCTGCTCGCTCAGC                                          >  1:9679828/1‑35
 CGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGC                                          >  1:6992468/1‑35
 CGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGC                                          <  1:18205025/35‑1
 CGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGC                                          >  1:2869158/1‑35
  GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCa                                         >  1:9745653/1‑34
  GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT                                         >  1:16126155/1‑35
  GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT                                         >  1:3180664/1‑35
  GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT                                         <  1:10826420/35‑1
  GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT                                         <  1:3434579/35‑1
  GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT                                         >  1:13113396/1‑35
  GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT                                         >  1:4357114/1‑35
  GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT                                         >  1:5434142/1‑35
  GATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCT                                         <  1:20353823/35‑1
  GATACCCAGATTCGAAAGGAGCTGCTCGCTAAGCT                                         >  1:3598855/1‑35
   ATGCCCAGATTCGAAAGGAGCTGCTCGCTCAGCTG                                        >  1:5897190/1‑35
   ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG                                        >  1:17845023/1‑35
   ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG                                        >  1:1530629/1‑35
   ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG                                        >  1:14703749/1‑35
   ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG                                        <  1:5610879/35‑1
   ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG                                        >  1:10476238/1‑35
   ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG                                        <  1:6696510/35‑1
   ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG                                        >  1:8212359/1‑35
   ATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTG                                        >  1:8467307/1‑35
    TGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGG                                       >  1:17582389/1‑35
    TGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGG                                       <  1:1719265/35‑1
    TGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGG                                       >  1:14185547/1‑35
     GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT                                      >  1:20124540/1‑35
     GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT                                      >  1:4029885/1‑35
     GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT                                      >  1:19649835/1‑35
     GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT                                      <  1:7225029/35‑1
     GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT                                      >  1:14951421/1‑35
     GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT                                      >  1:11586503/1‑35
     GCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGT                                      >  1:8078956/1‑35
     GCCCAGATTCGAAAGGAGCTGCTCGCCAAGCTGGT                                      >  1:1231513/1‑35
      CCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGgg                                     >  1:10071285/1‑33
      CCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTG                                     <  1:10688581/35‑1
      CCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTG                                     <  1:13273870/35‑1
      CCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTG                                     <  1:16836808/35‑1
       CCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGG                                    <  1:12814568/35‑1
       CCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGG                                    <  1:9060249/35‑1
       CCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGG                                    >  1:14328098/1‑35
       CCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGG                                    <  1:2492317/35‑1
        CAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGGG                                   >  1:19046285/1‑35
        CAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGGG                                   >  1:15364957/1‑35
        CAGATTCGAAAGGAGCTGCTCGCTAAGCTGGGGGG                                   >  1:8870901/1‑35
           ATTCGAAAGGAGCTGCTCGCTAAGCTGGTGGGTTT                                >  1:8031583/1‑35
           ATTCGAAAGGAGCTGCTCGCTAAGCTGGTGGGGTT                                >  1:2336992/1‑35
            TTCGAAAGGAGCTGCTCGCTAAGCTGGTGGGTTTT                               >  1:13794622/1‑35
            TTCGAAAGGAGCTGCTCGCTAAGCTGGTGGGGTTT                               >  1:9920843/1‑35
            TTCGAAAGGAGCTGCTCGCTAAGCTGGTGGGGTTT                               >  1:10820514/1‑35
             TCGAAAGGAGCTGCTCGCTAAGCTGGTGGGGTTTT                              >  1:848973/1‑35
              CGAAAGGAGCTGCTCGCTAAGCTGGTGGGTTTTTT                             >  1:10521608/1‑35
              CGAAAGGAGCTGCTCGCTAAGCTGGTGGGGTTTTT                             >  1:6520106/1‑35
              CGAAAGGAGCTGCTCGCTAAGCTGGTGGGGTTTTT                             >  1:18092958/1‑35
               GAAAGGAGCTGCTCGCTAAGCTGGTGGGTTTTTTt                            >  1:18930214/1‑34
               GAAAGGAGCTGCTCGCTAAGCTGGTGGGTTTTTTt                            >  1:9650119/1‑34
                AAAGGAGCTGCTCGCTAAGCTGGTGGGGTTTTTtt                           >  1:1155497/1‑33
                 AAGGAGCTGCTCGCTAAGCTGGTGGGGTTTTTgct                          >  1:9151/1‑32
                 AAGGAGCTGCTCGCTAAGCTGGTGGGGTTTTTTTT                          >  1:4106208/1‑35
                                  GCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAA         >  1:13288128/1‑35
                                  GCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAA         <  1:11990589/35‑1
                                  GCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAA         >  1:365031/1‑35
                                  GCTGGTGGGGTTCTTATTATAGAAATAGGCAAAAA         <  1:19160119/35‑1
                                   CTGGTGGGGTTTTTATTATAGAAATAGGCAAAAAT        <  1:18004504/35‑1
                                   CTGGTGGGGTTTTTATTATAGAAATAGGCAAAAAT        >  1:11963447/1‑35
                                   CTGGTGGGGTTTTTATTATAGAAATAGGCAAAAAT        <  1:1953386/35‑1
                                    TGGTGGGGTTTTTATTATAGAAATAGGCAAAAATG       >  1:1875117/1‑35
                                    TGGTGGGGTTTTTATTATAGAAATAGGCAAAAATG       >  1:3434711/1‑35
                                    TGGTGGGGTTTTTATTATAGAAATAGGCAAAAATG       >  1:13597918/1‑35
                                     GGTGGGGTTTTTATTATAGAAATAGGCAAAAATGA      >  1:1086840/1‑35
                                     GGTGGGGTTTTTATTATAGAAATAGGCAAAAATGA      <  1:7692554/35‑1
                                     GGTGGGGTTTTTATTATAGAAATAGGCAAAAATGA      >  1:17452073/1‑35
                                     GGTGGGGTTTTTATTATAGAAATAGGCAAAAATGA      <  1:19331659/35‑1
                                      GTGGGGTTTTTATTATAGAAATAGGCAAAAATGAT     <  1:16157264/35‑1
                                      GTGGGGTTTTTATTATAGAAATAGGCAAAAATGAT     <  1:19106268/35‑1
                                      GTGGGGTTTTTATTATAGAAATAGGCAAAAATGAT     <  1:19839807/35‑1
                                       TGGGGTTTTTATTATAGAAATAGGCAAAAATGATG    <  1:12616153/35‑1
                                       TGGGGTTTTTATTATAGAAATAGGCAAAAATGATG    <  1:4943237/35‑1
                                        GGGGTTTTTATTATAGAAATAGGCAAAAATGATGG   <  1:9004834/35‑1
                                        GGGGTTTTTATTATAGAAATAGGCAAAAATGATGG   >  1:16992404/1‑35
                                        GGGGTTTTTATTATAGAAATAGGCAAAAATGATGG   <  1:9250186/35‑1
                                         GGGTTTTTATTATAGAAATAGGCAAAAATGATGtg  >  1:864000/1‑33
                                         GGGTTTTTATTATAGAAATAGGCAAAAATGATGGG  >  1:14323314/1‑35
                                                                            
CCGATGCCCAGATTCGAAAGGAGCTGCTCGCTAAGCTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2533753‑2533712
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggtggGGTTTTTATTATAGAAATAGGCAAAAATGATGGG  >  REL606/3554407‑3554440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.