New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 389983 | 64 (0.620) | 8 (0.100) | 5/36 | NT | 10.3% | coding (575/1374 nt) | proY | predicted cryptic proline transporter |
? | REL606 | = 3813056 | 92 (1.190) | intergenic (‑137/‑797) | ivbL/emrD | ilvB operon leader peptide/multidrug efflux system protein |
Only 100 of 197 total aligned reads displayed.
CACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGC > REL606/3813022‑3813090 | cACGTTTTGTACTGAATTGCAGATAACAAAAAAcc > 1:17132132/1‑35 (MQ=255) cACGTTTTGTACTGAATTGCAGATAACAAAAAAcc < 1:12409154/35‑1 (MQ=255) cACGTGTTGTACTGAATTGCAGATAACAAAAAAcc < 1:6546082/35‑1 (MQ=255) aCGTTTTGTACTGAATTGCAGATAACAAAAAACCc > 1:16082044‑M2/1‑34 (MQ=255) aCGTTTTGTACTGAATTGCAGATAACAAAAAACCc < 1:8014081‑M2/35‑2 (MQ=255) aCGTTTTGTACTGAATTGCAGATAACAAAAAACCc > 1:11032337‑M2/1‑34 (MQ=255) cGTTTTGTACTGAATTGCAGATAACAAAAAACCcc > 1:16802864‑M2/1‑33 (MQ=255) cGTTTTGTACTGAATTGCAGATAACAAAAAACCcc > 1:16612700‑M2/1‑33 (MQ=255) cGTTTTGTACTGAATTGCAGATAACAAAAAACCcc > 1:18741165‑M2/1‑33 (MQ=255) cGTTTTGTACTGAATTGCAGATAACAAAAAACCcc < 1:8381026‑M2/35‑3 (MQ=255) cGTTTTGTACTGAATTGCAGATAACAAAAAACCcc > 1:1060720‑M2/1‑33 (MQ=255) cGTTTTGTACTGAATTGCAGATAACAAAAAACCcc > 1:2379911‑M2/1‑33 (MQ=255) gTTTTGTACTGAATTGCAGATAACAAAAAACCccg < 1:6794658‑M2/35‑4 (MQ=255) gTTTTGTACTGAATTGCAGATAACAAAAAACCccg < 1:5471956‑M2/35‑4 (MQ=255) gTTTTGTACTGAATTGCAGATAACAAAAAACCccg < 1:5359911‑M2/35‑4 (MQ=255) gTTTTGTACTGAATTGCAGATAACAAAAAACCccg < 1:19743797‑M2/35‑4 (MQ=255) ttttGTACTGAATTGCAGATAACAAAAAACCccgc > 1:1141607‑M2/1‑31 (MQ=255) tttGTACTGAATTGCAGATAACAAAAAACCcctcc < 1:1829410‑M2/35‑6 (MQ=255) tttGTACTGAATTGCAGATAACAAAAAACCccgcc < 1:12547245‑M2/35‑6 (MQ=255) ttGTACTTAATTGCAGATAACAAAAAACCccgccg < 1:6496409‑M2/35‑7 (MQ=255) ttGTACTGAATTGCAGATAACAAAAAACCccgccg < 1:13395831‑M2/35‑7 (MQ=255) ttGTACTGAATTGCAGATAACAAAAAACCccgccg < 1:17451156‑M2/35‑7 (MQ=255) ttGTACTGAATTGCAGATAACAAAAAACCccgccg < 1:18907714‑M2/35‑7 (MQ=255) tGTACTGAATTGCAGATAACAAAAACCCCCGCCgg < 1:14739494/35‑1 (MQ=255) tGTACTGAATTGCAGATAACAAAAAACCCCGCCgg > 1:3716523/1‑35 (MQ=255) tGTACTGAATTGCAGATAACAAAAAACCCCGCCgg < 1:70538/35‑1 (MQ=255) tGTACTGAATTGCAGATAACAAAAAACCCCGCCgg < 1:20553380/35‑1 (MQ=255) gTACTGAATTGCAGATAACAAAAAACCCCGCCGGa > 1:2661097/1‑35 (MQ=255) cTGAATTGCAGATAACAAAAAACCCCGCCGGAGCg > 1:13723523/1‑35 (MQ=255) cTGAATTGCAGATAACAAAAAACCCCGCCGGAGCg < 1:15501362/35‑1 (MQ=255) tGAATTGCAGATAACAAAAAACCCCTCCGGAGCGa > 1:11143756/1‑35 (MQ=255) tGAATTGCAGATAACAAAAAACCCCGCCGGAGCGa > 1:8068945/1‑35 (MQ=255) tGAATTGCAGATAACAAAAAACCCCGCCGGAGCGa > 1:1261581/1‑35 (MQ=255) gAATTGCAGATAACAAAAAACCCCGCCGGAGCGAg > 1:11905481/1‑35 (MQ=255) gAATTGCAGATAACAAAAAACCCCGCCGGAGCGAg < 1:10758279/35‑1 (MQ=255) gAATTGCAGATAACAAAAAACCCCGCCGGAGCGAg > 1:4808929/1‑35 (MQ=255) gAATTGCAGATAACAAAAAACCCCGCCGGAGCGAg > 1:10101489/1‑35 (MQ=255) aaTTGCAGATAACAAAAAACCCCGCCGGAGCGAgg < 1:19068743/35‑1 (MQ=40) aaTTGCAGATAACAAAAAACCCCGCCGGAGCGAgg > 1:9326474/1‑35 (MQ=40) aaTTGCAGATAACAAAAAACCCCGCCGGAGCGAgg > 1:11246256/1‑35 (MQ=40) aaTTGCAGATAACAAAAAACCCCGCCGGAGCGAgg > 1:8847733/1‑35 (MQ=40) aTTTCAGATAACAAAAAACCCCGCCGGAGCGAGGt > 1:19814805/1‑35 (MQ=12) aTTGCAGATAACAAAAACCCCCGCCGGAGCGAGGt < 1:14265559/35‑1 (MQ=255) aTTGCAGATAACAAAAAACCCCGCCGGAGCGAGGt > 1:3111508/1‑35 (MQ=38) aTTGCAGATAACAAAAAACCCCGCCGGAGCGAGGt > 1:15778724/1‑35 (MQ=38) aTTGCAGATAACAAAAAACCCCGCCGGAGCGAGGt > 1:11378309/1‑35 (MQ=38) aTTGCAGATAACAAAAAACCCCGCCGGAGCGAGGt < 1:4519489/35‑1 (MQ=38) ttGCAGATAACAAAAAACCCCGCCGGAGCGAGGtt > 1:3362093/1‑35 (MQ=35) tGCAGATAACAAAAAACCCCGCCGGAGCGAGGttt > 1:10956926/1‑35 (MQ=32) tGCAGATAACAAAAAACCCCGCCGGAGCGAGGttt > 1:8969621/1‑35 (MQ=32) gCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTc > 1:10313244/1‑35 (MQ=32) gCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTc < 1:20474122/35‑1 (MQ=32) gCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTc > 1:4580238/1‑35 (MQ=32) gCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTc < 1:18440579/35‑1 (MQ=32) gCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTc > 1:16962354/1‑35 (MQ=32) cAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCg > 1:424857/1‑35 (MQ=35) aGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGt > 1:12847370/1‑35 (MQ=38) aGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGt < 1:4420031/35‑1 (MQ=38) aGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGt < 1:16215408/35‑1 (MQ=38) taTAACAAAAAACCCCGCCGGAGCGAGGTTTCGTc > 1:11518923/2‑35 (MQ=255) gATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTc < 1:5109262/35‑1 (MQ=40) gATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTc > 1:14457612/1‑35 (MQ=40) gATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTc > 1:14719978/1‑35 (MQ=40) gATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTc < 1:2795869/35‑1 (MQ=40) gATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTc > 1:16299565/1‑35 (MQ=40) aTAACAAAAAACCCCGCTGGAGCGAGGTTTCGTCa > 1:10090066/1‑35 (MQ=255) aTAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCa > 1:19966431/1‑35 (MQ=255) tAACAAAAGACCccgccgttgctccacaggttatg > 1:3453930‑M2/1‑12 (MQ=255) tAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAg > 1:17014849/1‑35 (MQ=255) aaCAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGt < 1:15045528/35‑1 (MQ=255) aCAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTc < 1:17639496/35‑1 (MQ=255) aCAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTc > 1:4926333/1‑35 (MQ=255) cAAAAAACCccgccgttgctccacaggttatgaat > 1:7720340‑M2/1‑9 (MQ=255) cAAAAAAACccgccgttgctccacaggttatgaat > 1:3818064‑M2/1‑9 (MQ=255) taaagacCccgccgttgctccacaggttatgaata > 1:12143159‑M2/2‑8 (MQ=255) aaaaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGc > 1:13602604/1‑35 (MQ=255) aaaaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGc > 1:18109573/1‑35 (MQ=255) aaaaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGc > 1:3214272/1‑35 (MQ=255) aaaaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGc > 1:1946022/1‑35 (MQ=255) aaaacCCCCGCCGGAGCGAGGTTTCGTCAGTGGcc < 1:11984889/35‑1 (MQ=18) aaaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGcc > 1:16027298/1‑35 (MQ=255) aaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCt < 1:18509234/35‑1 (MQ=255) aaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCt > 1:4149329/1‑35 (MQ=255) aaaCCCCGCCGGAGCGATGTTTCGTCAGTCGCCTg > 1:6047985/1‑35 (MQ=255) gacCccgccgttgctccacaggttatgaataccgg > 1:6717725‑M2/2‑4 (MQ=255) acccccGCCGGAGCGAGGTTTCGTCAGTCGCCTGc < 1:3523979/33‑1 (MQ=255) acccccGCCGGAGCGAGGTTTCGTCAGTCGCCTGc < 1:13924630/33‑1 (MQ=255) aaCCccgccgttgctccacaggttatgaataccgg > 1:7252045‑M2/1‑4 (MQ=255) aaCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGc > 1:1458404/1‑35 (MQ=255) aaCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGc > 1:7973542/1‑35 (MQ=255) aaCCCCGCCGGAGCGAGGTTTCGTCAGGCGCCTgt > 1:8248176/1‑34 (MQ=255) aCCccgccgttgctccacaggttatgaataccggt > 1:19367179‑M2/1‑3 (MQ=255) aCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCg < 1:8664202/35‑1 (MQ=255) aCCCCGCCGGAGCGAGGTTTCGTCAGGCGCCTGCg > 1:1171489/1‑35 (MQ=255) gcccgccgttgctccacaggttatgaataccggtc > 1:19253509‑M2/2‑2 (MQ=255) ccccgccgttgctccacaggttatgaataccggtc > 1:5652978‑M2/1‑2 (MQ=255) ccccGCCGGAGCGAGGTTTCGTCAGTCGCCTGCgg < 1:2875354/35‑1 (MQ=255) acccgccgttgctccacaggttatgaataccggtc > 1:2686075‑M2/2‑2 (MQ=255) acccgccgttgctcaacaggttatgaataccggtc > 1:8444178‑M2/2‑2 (MQ=255) cccGCCGGATCGAGGTTTCGTCAGTCGCCTGCGGc > 1:3887744/1‑35 (MQ=255) | CACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGC > REL606/3813022‑3813090 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |