New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2698091 = | 73 (0.710) | 6 (0.070) | 3/40 | NT | 9.3% | coding (1992/2145 nt) | nrdE | ribonucleotide‑diphosphate reductase alpha subunit |
? | REL606 | 3668825 = | 56 (0.650) | coding (873/2031 nt) | malS | periplasmic alpha‑amylase precursor |
TGATATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2698128‑2698091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcCGATCTACGGACGCTGGTTGATAGCGCACATCAG > REL606/3668825‑3668858 TGATATCGCGAGTGGTGGCGGTATCGGGGAAAAAA < 1:3303525/35‑1 TGATATCGCGAGTGGTGGCGGTATCGGGGAAAAAA < 1:18930898/35‑1 TGATATCGCGAGTGGTGGCGGTATCGGGGAAAAAA < 1:18069239/35‑1 GATATCGCGAGTGGTGGCGGTATCGGGGAAAAAAA < 1:11112280/35‑1 GATATCGCGAGTGGTGGCGGTATCGGGGAAAAAAA < 1:19958493/35‑1 GATATCGCGAGTGGTGGCGGTATCGGGGAAAAAAA < 1:16757384/35‑1 nTATCNCGAGTGGTGGCGGTATCGGGGAAAAAAAG < 1:17894901/34‑1 TATGGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC < 1:6815282/35‑1 TATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC < 1:81503/35‑1 TATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC < 1:6927405/35‑1 TATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC < 1:6813905/35‑1 TATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC < 1:14911576/35‑1 TATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC < 1:15139588/35‑1 ataGGGGAAAAAAAGCCGATCTACGGACGCTGGTT < 1:3875278/32‑1 gGGGGCAAAAAAGCCGATCTACGGACGCTGGTTGA < 1:15571958/34‑1 tGGGAAAAAAAGCCGATCTACGGACGCTGGTTGAT < 1:2190693/34‑1 GGGGAAAAAAAGCCGATCTACGGACGCTGGTTGAT < 1:2921361/35‑1 ggaAAAAAAAGCCGATCTACGGACGCTGGTTGATA < 1:4541546/32‑1 GGGCAAAAAAGCCGATCTACGGACGCTGGTTGATA < 1:9937222/35‑1 cAAAGAAAGCCGATCTACGGACGCTGGTTGATAGC < 1:16148801/34‑1 acAAAAAAGCCGATCTACGGACGCTGGTTGATAGC < 1:18402055/33‑1 aAAAAAAAGCCGATCTACGGACGCTGGTTGATAGC < 1:16328580/34‑1 aAAAAAAAGCCGATCTACGGACGCTGGTTGATAGC < 1:17736070/34‑1 GAAAAAAAGCCGATCTACGGACGCTGGTTGATAGC < 1:13022735/35‑1 AAAAAAGCCGATCTACGGACGCTGGTTGATAGCGC < 1:509860/35‑1 acAAAGCCGATCTACGGACGCTGGTTGATAGCGCA < 1:7022865/33‑1 AAAAAGCCGATCTACGGACGCTGGTTGATAGCGCA < 1:5561833/35‑1 cAAAGCCGATCTACGGACGCTGGTTGATAGCGCAC < 1:5676354/34‑1 AAAAGCCGATCTACGGACGCTGGTTGATAGCGCAC < 1:5344334/35‑1 AAAAGCCGATCTACGGACGCTGGTTGATAGCGCAC < 1:8654633/35‑1 AAAAGCCGATCTACGGACGCTGGTTGATAGCGCAC < 1:13597825/35‑1 AAAGCCGATCTACGGACGCTGGTTGATAGCGCACA < 1:6989485/35‑1 AAAGCCGATCTACGGACGCTGGTTGATAGCGCACA < 1:4659174/35‑1 AAAGCCGATCTACAGACGCTGGTTGATAGCGCACA < 1:5730130/35‑1 AAGCCGATCTACGGACGCTGGTTGATAGCGCACAT > 1:8590450/1‑35 AGCCGATCTACGGACGCTGGTTGATAGCGCACATC > 1:14541082/1‑35 AGCCGATCTACGGACGCTGGTTGATAGCGCACATC < 1:6930891/35‑1 AGCAGATCTACGGACGCTGGTTGATAGCGCACATC < 1:2210592/35‑1 GCCGATCTACGGACGCTTGTTGATAGCGCACATCA > 1:6957692/1‑35 GCCGATCTACGGACGCTGGTTGATAGCGCACCTCA > 1:15895738/1‑35 GCCGATCTACGGACGCTGGTTGATAGCGCACATCA < 1:13052591/35‑1 GCCGATCTACGGACGCTGGTTGATAGCGCACATCA > 1:1268475/1‑35 GCCGATCTACGGACGCTGGTTGATAGCGCACATCA < 1:11179803/35‑1 GCCGATCTACGGACGATGGTTGATAGCGCACATCA < 1:16298117/35‑1 CCGATCTACGGACGCTGGTTGATAGCGCACATCAG > 1:16468031/1‑35 CCGATCTACGGACGCTGGTTGATAGCGCACATCAG < 1:9120566/35‑1 CCGATCTACGGACGCTGGTTGATAGCGCACATCAG < 1:18424523/35‑1 CCGATCTACGGACGCTGGTTGATAGCGCACATCAG < 1:16054077/35‑1 CCGATCTACGGACGCTGGTTGATAGCGCACATCAG > 1:20040754/1‑35 CCGATCTACGGACGCTGGTTGATAGCGCACATCAG < 1:13839499/35‑1 CCGATCTACGGACGCTGGTTGATAGCGCACATCAG < 1:3730529/35‑1 CCGATCTACGGACGCTGGTTGATAGCGCACATCAG > 1:3822356/1‑35 TGATATCGCGAGTGGTGGCGGTATCGGGGAAAAAAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2698128‑2698091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcCGATCTACGGACGCTGGTTGATAGCGCACATCAG > REL606/3668825‑3668858 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |