New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 469267 =124 (1.210)5 (0.060) 3/42 NT 4.9% coding (26/645 nt) adk adenylate kinase
?REL606 2766488 = 87 (0.970)coding (154/480 nt) ispF 2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase

Only 100 of 227 total aligned reads displayed.

ATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCAGTTCATC  >  REL606/469233‑469301
                                  |                                  
aTTTTCGCAATGCGTATCATTCTGCTTGGCGCTcc                                    <  1:14978552/35‑1 (MQ=255)
aTTTTCGCAATGCGTATCATTCTGCTTGGCGCTcc                                    <  1:15024474/35‑1 (MQ=255)
aTTTTCGCAATGCGTATCATTCTGCTTGGCGCTcc                                    <  1:4440256/35‑1 (MQ=255)
 ttttCGCAATGCGTATCATTCTGCTTGGCGCTCCg                                   >  1:11299017/1‑35 (MQ=255)
 ttttCGCAATGCGTATCATTCTGCTTGGCGCTCCg                                   <  1:11414384/35‑1 (MQ=255)
 tccatgcgttgaccgatgcattgcttggcgcggcg                                   <  1:9607184‑M1/2‑1 (MQ=255)
 tccatgcgttgaccgatgcattgcttggcgcggcg                                   <  1:5759617‑M1/2‑1 (MQ=255)
 tccatgcattgaccgatgcattgcttggcgcggcg                                   >  1:4548580‑M1/34‑35 (MQ=255)
  tttCGCAATGCGTATCATTCTGCTTGGCGCTCCgg                                  <  1:16902148/35‑1 (MQ=255)
  tttCGCAATGCGTATCATTCTGCTTGGCGCTCCgg                                  <  1:12024419/35‑1 (MQ=255)
  tttCGCAATGCGTATCATTCTGCTTGGCGCTCCgg                                  <  1:13139128/35‑1 (MQ=255)
  ccatgcgttgaccgatgcattgcttggcgcggcgg                                  <  1:15857273‑M1/3‑1 (MQ=255)
  ccatgcgttgaccgatgcattgcttggcgcggcgg                                  <  1:8159953‑M1/3‑1 (MQ=255)
  ccatgcgttgaccgatgcattgcttggcgcggcgg                                  <  1:13047498‑M1/3‑1 (MQ=255)
   catgcgttgaccgatgcattgcttggcgcggcggg                                 <  1:19941021‑M1/4‑1 (MQ=255)
    tCGCAATGCGTATCATTCTGCTTGGCGCTCCGGgc                                <  1:6935569/35‑1 (MQ=255)
    tCGCAATGCGTATCATTCTGCTTGGCGCTCCGGgc                                <  1:19881803/35‑1 (MQ=255)
    atgcgttgaccgatgcattgcttggcgcggcgggg                                <  1:15994825‑M1/5‑2 (MQ=255)
    atgcgttgaccgatgcattgcttggcgcggcgggg                                <  1:2218111‑M1/5‑2 (MQ=255)
     tgcgttgaccgatgcattgcttggcgcggcggggg                               <  1:12646957‑M1/6‑3 (MQ=255)
      gcgttgaccgatgcattgcttggcgcggcggggcg                              <  1:2048712‑M1/7‑4 (MQ=255)
      gCAATGCGTATCATTCTGCTTGGCGCTCCGGgcgc                              >  1:15597091/1‑35 (MQ=255)
      gCAATGCGTATCATTCTGCTTGGCGCTCCGGgcgc                              >  1:6004868/1‑35 (MQ=255)
       cgttgaccgatgcattgcttggcgcggCGGGggcg                             <  1:2906925‑M1/8‑1 (MQ=255)
       cAATGCTTATCATTCTGCTTGGCGCTCCGGGcgcg                             >  1:4797417/1‑35 (MQ=255)
       cAATGCGTATCATTCTGCTTGGCGCTCCGGGcgcg                             <  1:13359182/35‑1 (MQ=255)
        gttgaccgatgcattgcttggcgcggCGGGGGCgg                            <  1:8746087‑M1/9‑1 (MQ=255)
        aaTGCGTATCATTCTGCTTGGCGCTCCGGGCGCgg                            >  1:3639492/1‑35 (MQ=255)
        aaTGCGTATCATTCTGCTTGGCGCTCCGGGCGCgg                            >  1:10773909/1‑35 (MQ=255)
        aaTGCGTATCATTCTGCTTGGCGCTCCGGGCGCgg                            >  1:2037123/1‑35 (MQ=255)
        aaTGCGTATCATTCTGCTTGGCGCTCCGGGCGCgg                            >  1:12594471/1‑35 (MQ=255)
        aaTGCGTATCATTCTGCTTGGCGCTCCGGGCGCgg                            >  1:7265356/1‑35 (MQ=255)
         aTGCGTATCATTCTGCTTGGCGCTCCGGGCGCggg                           <  1:2762402/35‑1 (MQ=255)
         aTGCGTATCATTCTGCTTGGCGCTCCGGGCGCggg                           <  1:18772246/35‑1 (MQ=255)
          tgaccgatgcattgcttggcgcggCGGCCGCgggg                          <  1:19522007‑M1/11‑1 (MQ=255)
           gCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGa                         <  1:7763763/35‑1 (MQ=255)
            cGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGaa                        >  1:10463625/1‑35 (MQ=255)
            cGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGaa                        >  1:8103150/1‑35 (MQ=255)
            cGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGaa                        <  1:3547113/35‑1 (MQ=255)
             gTATCATTCTGCTTGGCGCTCCGGGCGCGGGGaaa                       >  1:10845364/1‑35 (MQ=255)
             gTATCATTCTGCTTGGCGCTCCGGGCGCGGGGaaa                       >  1:4128984/1‑35 (MQ=255)
             gTATCATTCTGCTTGGCGCTCCGGGCGCGGGGaaa                       <  1:13482242/35‑1 (MQ=255)
             gTATCATTCTGCTTGGCGCTCCGGGCGCGGGGaaa                       >  1:5867279/1‑35 (MQ=255)
             gTATCATTCTGCCTGGCGCTCCGGGCGCGGGGaaa                       >  1:18322065/1‑35 (MQ=255)
              tATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAg                      >  1:17128563/1‑35 (MQ=255)
              tATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAg                      >  1:914685/1‑35 (MQ=255)
               aTCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAgg                     <  1:3595617/35‑1 (MQ=255)
                tCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAggg                    <  1:8956401/35‑1 (MQ=255)
                tCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAggg                    <  1:854663/35‑1 (MQ=255)
                  aTTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGAc                  <  1:9856233/35‑1 (MQ=255)
                  aTTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGAc                  >  1:18007638/1‑35 (MQ=255)
                  aTTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGAc                  >  1:17402080/1‑35 (MQ=255)
                   ttCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACt                 <  1:15150507/35‑1 (MQ=255)
                    tCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTc                <  1:11354240/35‑1 (MQ=255)
                    tCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTc                <  1:7569107/35‑1 (MQ=255)
                    tCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTc                <  1:3824577/35‑1 (MQ=255)
                    tCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTc                >  1:7916093/1‑35 (MQ=255)
                     cTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCa               >  1:8491009/1‑35 (MQ=255)
                     cTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCa               <  1:15568403/35‑1 (MQ=255)
                     cTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCa               >  1:53530/1‑35 (MQ=255)
                      tGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAg              >  1:16530482/1‑35 (MQ=255)
                      tGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAg              <  1:9338552/35‑1 (MQ=255)
                      tGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAg              <  1:6352363/35‑1 (MQ=255)
                      tGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAg              >  1:9167887/1‑35 (MQ=255)
                       gCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAgg             >  1:8278036/1‑35 (MQ=255)
                        cTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGc            >  1:3283863/1‑35 (MQ=255)
                        cTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGc            >  1:6175582/1‑35 (MQ=255)
                         ttGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCt           >  1:15453006/1‑35 (MQ=255)
                         ttGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCt           >  1:6575302/1‑35 (MQ=255)
                         ttGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCt           >  1:19095578/1‑35 (MQ=255)
                          tGGCGCTCCGGGCGCGGGGAAAGTGACTCAGGCTc          >  1:12817651/1‑35 (MQ=255)
                          tGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTc          <  1:7736197/35‑1 (MQ=255)
                          tGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTc          <  1:13851696/35‑1 (MQ=255)
                          tGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTc          >  1:17375676/1‑35 (MQ=255)
                          tGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTc          <  1:14162307/35‑1 (MQ=255)
                          tGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTc          <  1:9287977/35‑1 (MQ=255)
                           ggCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCa         <  1:6860753/35‑1 (MQ=255)
                           ggCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCa         <  1:11758708/35‑1 (MQ=255)
                           ggCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCa         >  1:1035539/1‑35 (MQ=255)
                           ggCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCa         >  1:19707164/1‑35 (MQ=255)
                           ggCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCa         <  1:4620153/35‑1 (MQ=255)
                            gcgcTCCGGGCGCGGGGAAAGGGACTCAGGCTCAg        >  1:19396329/1‑35 (MQ=255)
                            gcgcTCCGGGCGCGGGGAAAGGGACTCAGGCTCAg        <  1:19156224/35‑1 (MQ=255)
                             cgcTCCGGGCGCGGGGAAAGGGACTCAGGCTCAGt       <  1:19804310/35‑1 (MQ=255)
                             cgcTCCGGGCGCGGGGAAAGGGACTCAGGCTCAGt       <  1:11593600/35‑1 (MQ=255)
                              gcTCCGGGCGCGGGGAAAGGGACTCAGGCTCAGtt      >  1:14320736/1‑35 (MQ=255)
                              gcTCCGGGCGCGGGGAAAGGGACTCAGGCTCAGtt      >  1:17020633/1‑35 (MQ=255)
                              gcTCCGGGCGCGGGGAAAGGGACTCAGGCTCAGtt      >  1:409911/1‑35 (MQ=255)
                              gcTCCAGGCGCGGGGAAAGGGACTCAGGCTCAGtt      <  1:15523650/35‑1 (MQ=255)
                               cTCCGGGCGCGGGGAAAGGGACTCAGGCTCAGTtc     <  1:19381161/35‑1 (MQ=255)
                               cTCCGGGCGCGGGGAAAGGGACTCAGGCTCAGTtc     <  1:1851367/35‑1 (MQ=255)
                               cTCCGGGCGCGGGGAAAGGGACTCAGGCTCAGTtc     <  1:4324478/35‑1 (MQ=255)
                                tCCGGGCGCGGGGAAAGGGACTCAGGCTCAGTtca    >  1:17808667/1‑35 (MQ=255)
                                tCCGGGCGCGGGGAAAGGGACTCAGGCTCAGTtca    <  1:13672548/35‑1 (MQ=255)
                                tCCGGGCGCGGGGAAAGGGACTCAGGCTCAGTtca    <  1:20204362/35‑1 (MQ=255)
                                 ccGGGCGCGGGGAAAGGGACTCAGGCTCAGTtcat   <  1:12348266/35‑1 (MQ=255)
                                 ccGGGCGCGGGGAAAGGGACTCAGGCTCAGTtcat   <  1:11251832/35‑1 (MQ=255)
                                 ccGGGCGCGGGGAAAGGGACTCAGGCTCAGTtcat   <  1:5824564/35‑1 (MQ=255)
                                  CGGGCGCGGGGAAAGGGACTCAGGCTCAGTtcatc  >  1:19913326‑M1/1‑35 (MQ=255)
                                  CGGGCGCGCGGAAAGGGACTCAGGCTCAGTtcatc  <  1:7095743‑M1/35‑1 (MQ=255)
                                  |                                  
ATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCAGTTCATC  >  REL606/469233‑469301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.