New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 294957169 (0.670)15 (0.150) 5/46 NT 14.6% coding (834/996 nt) argK arginine/ornithine transport system ATPase
?REL606 = 3728925 109 (1.110)coding (59/960 nt) yibQ predicted polysaccharide deacetylase

Only 100 of 203 total aligned reads displayed.

CTTGCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCCGTACTTGCTGGCAAACTTGCCATCGTCATTGAT  >  REL606/3728891‑3728959
                                  |                                  
cTTGCATTTGCCGCTCTGTTGGCGCTCTCCTcccc                                    >  1:8938319/1‑35 (MQ=255)
cTTGCATTTGCCGCTCTGTTGGCGCTCTCCTcccc                                    <  1:3180758/35‑1 (MQ=255)
cTTGCATTTGCCGCTCTGTTGGCGCTCTCCTcccc                                    <  1:15502741/35‑1 (MQ=255)
cTTGCATTTGCCGCTCTGTTGGCGCTCTCCTcccc                                    >  1:12882560/1‑35 (MQ=255)
 ttGCATTTGGCGCTCTGTTGGCGCTCTCCTCCCCc                                   <  1:2852735‑M2/35‑2 (MQ=255)
 ttGCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCc                                   >  1:2789503‑M2/1‑34 (MQ=255)
 ttGCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCc                                   >  1:8245993‑M2/1‑34 (MQ=255)
 ttGCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCc                                   <  1:2456849‑M2/35‑2 (MQ=255)
 ttGCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCc                                   <  1:2937964‑M2/35‑2 (MQ=255)
 ttGCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCc                                   <  1:8562182‑M2/35‑2 (MQ=255)
 ttGCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCc                                   >  1:12928429‑M2/1‑34 (MQ=255)
  tGCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCCg                                  >  1:5437119/1‑35 (MQ=255)
  tGCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCCg                                  >  1:8357616/1‑35 (MQ=255)
  tGCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCCg                                  <  1:8439528/35‑1 (MQ=255)
  tGCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCCg                                  >  1:17361474/1‑35 (MQ=255)
   gCATTTGCCGCTCTTTTGGCGCTCTCCTCCCCCGt                                 >  1:7355483/1‑35 (MQ=255)
   gCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCCGt                                 <  1:15053942/35‑1 (MQ=255)
   gCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCCGt                                 >  1:11925024/1‑35 (MQ=255)
    cATTTGCCGCTCTGTTGGCGCTCTCCTCCCCccaa                                >  1:17484638‑M2/1‑31 (MQ=255)
    cATTTGCCGCTCTGTTGGCGCTCTCCTCCCCCGTa                                <  1:15028135/35‑1 (MQ=255)
     aTTTGCCGCTCTGTTGGCGCTCTCCTCCCCCGTAc                               >  1:6933227/1‑35 (MQ=255)
      tttGCCGCTCTGTTGGCGCTCTCCTCCCCCGTACt                              <  1:14219144/35‑1 (MQ=255)
      tttGCCGCTCTGTTGGCGCTCTCCTCCCCCGTACt                              <  1:19646985/35‑1 (MQ=255)
       ttGCCGCTCTGTTGGCGCTCTCCTCCCCCGTACtt                             >  1:1299420/1‑35 (MQ=255)
       ttGCCGCTCTGTTGGCGCTCTCCTCCCCCGTACtt                             <  1:15890410/35‑1 (MQ=255)
       ttGCCGCTCTGTTGGCGCTCTCCTCCCCCGTACtt                             >  1:11601797/1‑35 (MQ=255)
       ttGCCGCTCTGTTGGCGCTCTCCTCCCCCGTACtt                             <  1:17668323/35‑1 (MQ=255)
       ttGCCGCTCTGTTGGCGCTCTCCTCCCACGTACtt                             <  1:12975622/35‑1 (MQ=255)
        tGCCGCTCTGTTGGCGCTCTCCTCCCCCGTACTTg                            <  1:7619467/35‑1 (MQ=255)
        tGCCGCTCTGTTGGCGCTCTCCTCCCCCGTACTTg                            <  1:12047162/35‑1 (MQ=255)
         gCCGCTCTGTTGGCGCTCTCCTCCCCCGTACTTGc                           <  1:11809364/35‑1 (MQ=255)
         gCCGCTCTGTTGGCGCTCTCCTCCCCCGTACTTGc                           <  1:6443474/35‑1 (MQ=255)
          ccGCTCTGTTGGCGCTCTCCTCCCCCGTACTTGCt                          <  1:9801280/35‑1 (MQ=255)
          ccGCTCTGTTGGCGCTCTCCTCCCCCGTACTTGCt                          <  1:6701370/35‑1 (MQ=255)
          ccGCTCTGTTGGCGCTCTCCTCCCCCGTACTTGCt                          >  1:19859769/1‑35 (MQ=255)
          ccGCTCTGTTGGCGCTCTCCTCACCCGTACTTGCt                          <  1:7945320/35‑1 (MQ=255)
           cGCTCTGTTGGCGCTCTCCTCCCCCGTACTTGCTg                         >  1:13048090/1‑35 (MQ=255)
           cGCTCTGTTGGCGCTCTCCTCCCCCGTACTTGCTg                         <  1:8027943/35‑1 (MQ=255)
            gCTCTGTTGGCGCTCTCCTCCCCCGTACTTGCTgg                        <  1:15006165/35‑1 (MQ=255)
            gCTCTGTTGGCGCTCTCCTCCCCCGTACTTGCTgg                        <  1:7160935/35‑1 (MQ=255)
            gCTCTGTTGGCGCTCTCCTCCCCCGTACTTGCTgg                        >  1:662659/1‑35 (MQ=255)
            gCTCTGTTGGCGCTCTCCTCCCCCGTACTTGCTgg                        >  1:10442842/1‑35 (MQ=255)
             ctctGTTGGCGCTCTCCTCCCCCGTACTTGCTGGc                       >  1:9459717/1‑35 (MQ=255)
             ctctGTTGGCGCTCTCCTCCCCCGTACTTGCTGGc                       <  1:5462658/35‑1 (MQ=255)
             ctctGTTGGCGCTCTCCTCCCCCGTACTTGCTGGc                       <  1:13298005/35‑1 (MQ=255)
             ctctGTTGGCGCTCTCCTCCCCCGTACTTGCTGGc                       >  1:12405099/1‑35 (MQ=255)
             ctctGTTGGCGCTCTCCTCCCCCGTAATTGCTGGc                       <  1:9205656/35‑1 (MQ=255)
               ctGTTGGCGCTCTCCTCCCCCGTACTTGCTGGCaa                     >  1:17025009/1‑35 (MQ=255)
               ctGTTGGCGCTCTCCTCCCCCGTACTTGCTGGCaa                     >  1:16085965/1‑35 (MQ=255)
                tGTTGGCGCTCTCCTCCCCCGTACTTGCTGGCaaa                    >  1:16217655/1‑35 (MQ=255)
                 gTTGGCGCTCTCCTCCCCCGTACTTGCTGGCAAAc                   <  1:7008900/35‑1 (MQ=255)
                 gTTGGCGCTCTCCTCCCCCGTACTTGCTGGCAAAc                   >  1:19179462/1‑35 (MQ=255)
                 gTTGGCGCTCTCCTCCCCCGTACTTGCTGGCAAAc                   <  1:8779345/35‑1 (MQ=255)
                  ttGGCGCTCTCCTCCCCCGTACTTGCTGGCAAACt                  >  1:18565420/1‑35 (MQ=255)
                  ttGGCGCTCTCCTCCCCCGTACTTGCTGGCAAACt                  <  1:10691607/35‑1 (MQ=255)
                  ttGGCGCTCTCCTCCCCCGTACTTGCTGGCAAACt                  <  1:13453145/35‑1 (MQ=255)
                   tGGCGCTCTCCTCCACCGTACTTGCTGGCAAACtt                 <  1:11654687/35‑1 (MQ=255)
                   tGGAGCTCTCCTCCCCCGTACTTGCTGGCAAACtt                 <  1:12719978/35‑1 (MQ=255)
                   tGGAGCTCTCCTCCCCAGTACTTGCTGGCAAACtt                 <  1:13663169/35‑1 (MQ=38)
                    ggCGCTCTCCTCCCCCGTACTTGCTGGCAAACTTg                >  1:10344021/1‑35 (MQ=255)
                    ggCGCTCTCCTCCCCCGTACTTGCTGGCAAACTTg                >  1:5603853/1‑35 (MQ=255)
                     gcgcTCTCCTCCCTCGTACTTGCTGGCAAACTTGc               >  1:6162448/1‑35 (MQ=255)
                     gcgcTCTCCTCCCCCGTACTTGCTGGCAAACTTGc               >  1:3835291/1‑35 (MQ=255)
                     gcgcTCTCCTCCCCCGTACTTGCTGGCAAACTTGc               <  1:16696889/35‑1 (MQ=255)
                     gcgcTCTCCTCCCCCGTACTTGCTGGCAAACTTGc               >  1:16956981/1‑35 (MQ=255)
                      cgtTCTCCTCCCCcagccattccaccgattgttgt              >  1:11428225‑M2/1‑13 (MQ=255)
                      cgcTCTCCTCCCCCGTACTTGCTGGCAAACTTGcc              >  1:15985688/1‑35 (MQ=255)
                      cgcTCTCCTCCCCCGTACTTGCTGGCAAACTTGcc              >  1:9614309/1‑35 (MQ=255)
                      cgcTCTCCTCCCCCGTACTTGCTGGCAAACTTGcc              <  1:20485195/35‑1 (MQ=255)
                       tgtctcctCCCCcagccattccaccgattgttgtt             >  1:2082029‑M2/3‑12 (MQ=255)
                        ttctccTCCCCcagccattccaccgattgttgttg            >  1:17955610‑M2/2‑11 (MQ=255)
                        ctctCCTCCCCCGTACTTGCTGGCAAACTTGCCAt            >  1:4584417/1‑35 (MQ=255)
                         tctcCTCCCCCGTACTTGCTGGCAAACTTGCCATc           >  1:5862015/1‑35 (MQ=255)
                          ctcctcCCCcagccattccaccgattgttgttgcc          >  1:17997799‑M2/1‑9 (MQ=255)
                          ctcctcCCCCGTACTTGCTGGCAAACTTGCCATCg          <  1:11158106/35‑1 (MQ=255)
                          ctcctcCCCAGTACTTGCTGGCAAACTTGCCATCg          <  1:12173098/35‑1 (MQ=255)
                           tcctccCCCGTACTTGCTGGCAAACTTGCCATCGt         <  1:1999883/35‑1 (MQ=255)
                           tcccccCCcagccattccaccgattgttgttgccg         >  1:19506754‑M2/1‑8 (MQ=255)
                            cctccCCCGTACTTGCTGGCAAACTTGCCATCGTc        <  1:5353628/35‑1 (MQ=255)
                             ctccCCcagccattccaccgattgttgttgccgca       >  1:18227692‑M2/1‑6 (MQ=255)
                              tccCCcagccattccaccgattgttgttgccgcac      >  1:9888343‑M2/1‑5 (MQ=255)
                               cccccagccattccaccgattgttgttgccgcact     >  1:10196490‑M2/1‑4 (MQ=255)
                               cccccGTACTTGCTGGCAAACTTGCCATCGTCAtt     <  1:4117896/35‑1 (MQ=255)
                                ncccGTACTTGCTGGCAAACTTGCCATCGTCATtg    >  1:16776074/2‑35 (MQ=255)
                                ccccagccattccgccgattgttgttgccgcactt    >  1:12613268‑M2/1‑3 (MQ=255)
                                ccccagccattccaccgattgttgttgccgcactt    >  1:9949335‑M2/1‑3 (MQ=255)
                                ccccagccattccaccgattgttgttgccgcactt    >  1:6425052‑M2/1‑3 (MQ=255)
                                ccccGTACTTGCTGGCAAACTTGCCATCGTCATtg    <  1:3058607/35‑1 (MQ=255)
                                ccccGTACTTGCTGGCAAACTTGCCATCGTCATtg    <  1:2821426/35‑1 (MQ=255)
                                 cccagccattccaccgattgttgttgccgcacttg   >  1:2656228‑M2/1‑2 (MQ=255)
                                 cccagccattccaccgattgttgttgccgcacttg   >  1:8732283‑M2/1‑2 (MQ=255)
                                 cccagccattccaccgattgttgttgccgcacttg   >  1:1875680‑M2/1‑2 (MQ=255)
                                 cccagccattccaccgattgttgttgccgcacttg   >  1:9067321‑M2/1‑2 (MQ=255)
                                 cccGTACTTGCTGGCAAACTTGCCATCGTCATtga   >  1:16572901/1‑35 (MQ=255)
                                  ccGTACTTGCTGGCAAACTTGCCATCGTCATtgat  >  1:18923746/1‑35 (MQ=255)
                                  ccGTACTTGCTGGCAAACTTGCCATCGTCATtgat  >  1:18479757/1‑35 (MQ=255)
                                  ccGTACTTGCTGGCAAACTTGCCATCGTCATtgat  >  1:3346582/1‑35 (MQ=255)
                                  ccGTACTTGCTGGCAAACTTGCCATCGTCATtgat  >  1:14018684/1‑35 (MQ=255)
                                  ccGTACTTGCTGGCAAACTTGCCATCGTCATtgat  >  1:5496520/1‑35 (MQ=255)
                                  ccGTACTTGCTGGCAAACTTGCCATCGTCATtgat  <  1:6311163/35‑1 (MQ=255)
                                  |                                  
CTTGCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCCGTACTTGCTGGCAAACTTGCCATCGTCATTGAT  >  REL606/3728891‑3728959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.