New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 924268 =101 (0.980)7 (0.090) 3/36 NT 13.1% coding (722/1431 nt) ybjT conserved protein with NAD(P)‑binding Rossmann‑fold domain
?REL606 = 3633290 17 (0.220)coding (37/1005 nt) dppF dipeptide transporter

Only 100 of 268 total aligned reads displayed.

GGAAGTAATCACATTGAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGATCAACCAGCG  >  REL606/924234‑924302
                                  |                                  
tgtaaagacgagcaaggccgtctgcgtgttggtgc                                    <  1:15276286‑M1/1‑1 (MQ=255)
ggAAGTAATCACATTGAGAAACCACACCGAAATcc                                    <  1:17286778/35‑1 (MQ=255)
ggAAGTAATCACATTGAGAAACCACACCGAAATcc                                    >  1:7122735/1‑35 (MQ=255)
ggAAGTAATCACATTGAGAAACCACACCGAAATcc                                    >  1:7492552/1‑35 (MQ=255)
ccggataatgttttttcaggtcgatagcctgcaac                                    <  1:20487184‑M1/1‑1 (MQ=255)
ccggataatgttttttcaggtcgatagcctgcaac                                    <  1:6017402‑M1/1‑1 (MQ=255)
ccggataatgttttttcaggtcgatagcctgcaac                                    <  1:6916132‑M1/1‑1 (MQ=255)
ccggataatgttttttcaggtcgatagcctgcaac                                    <  1:7649049‑M1/1‑1 (MQ=255)
 gtaaagacgagcaaggccgtctgcgtgttggtgCa                                   <  1:9648221‑M1/2‑1 (MQ=255)
 gtaaagacgagcaaggccgtctgcgtgttggtgCa                                   >  1:7038356‑M1/34‑35 (MQ=255)
 gAAGTAATCACATTGAGAAACCACACCGAAATCCa                                   >  1:19615881/1‑35 (MQ=255)
 gAAGTAATCACATTGAGAAACCACACCGAAATCCa                                   >  1:10667290/1‑35 (MQ=255)
 cggataatgttttttcaggtcgatagcctgcaaCa                                   <  1:1164270‑M1/2‑1 (MQ=255)
 cggataatgttttttcaggtcgatagcctgcaaCa                                   <  1:13347220‑M1/2‑1 (MQ=255)
  taaagacgagcaaggccgtctgcgtgttggtgCAg                                  <  1:6192430‑M1/3‑1 (MQ=255)
  taaagacgagcaaggccgtctgcgtgttggtgCAg                                  <  1:1000611‑M1/3‑1 (MQ=255)
  taaagacgagcaaggccgtctgcgtgttggggCAg                                  <  1:15038054‑M1/3‑1 (MQ=255)
  ggctgaccgtcggcctgatgaatttgccgtagcag                                  <  1:16996425‑M1/3‑1 (MQ=255)
  ggataatgttttttcaggtcgatagcctgcaaCAg                                  <  1:1590037‑M1/3‑1 (MQ=255)
  aaGTAATCACATTGAGAAACCACACCGAAATCCAg                                  >  1:18983989/1‑35 (MQ=255)
  aaGTAATCACATTGAGAAACCACACCGAAATCCAg                                  >  1:12789566/1‑35 (MQ=255)
   gctgcccgtcggcctgatgaatttgccgtagcagc                                 >  1:1429759‑M1/32‑35 (MQ=255)
   gataatgttttttcaggtcgatagcctgcaaCAGc                                 <  1:13923107‑M1/4‑1 (MQ=255)
   aGTAATCACATTGAGAAACCACACCGAAATCCAGc                                 >  1:16654573/1‑35 (MQ=255)
   aGTAATCACATTGAGAAACCACACCGAAATCCAGc                                 >  1:4559630/1‑35 (MQ=255)
    gTAATCACATTGAGAAACCACACCGAAATCCAGCg                                >  1:6642632/1‑35 (MQ=255)
    gTAATCACATTGAGAAACCACACCGAAATCCAGCg                                <  1:13975475/35‑1 (MQ=255)
    ctgaccgtcggcctgatgaatttgccgtagCAGCg                                <  1:10687930‑M1/5‑1 (MQ=255)
    ctgaccgtcggcctgatgaatttgccgtagCAGCg                                >  1:3297909‑M1/31‑35 (MQ=255)
    ctgaccgtcggcctgatgaatttgccgtagCAGCg                                <  1:2729873‑M1/5‑1 (MQ=255)
    ataatgttttttcaggtcgatagcctgcaaCAGCg                                <  1:6452355‑M1/5‑1 (MQ=255)
    aagacgagcaaggccgtctgcgtgttggtgCAGCg                                <  1:8887930‑M1/5‑1 (MQ=255)
    aagacgagcaaggccgtctgcgtgttggtgCAGCg                                <  1:7311132‑M1/5‑1 (MQ=255)
     taatgttttttcaggtcgatagcctgcaaCAGCgg                               <  1:13421721‑M1/6‑1 (MQ=255)
     taatgttttttcaggtcgatagcctgcaaCAGCgg                               <  1:2615792‑M1/6‑1 (MQ=255)
     tAATCACATTGAGAAACCACACCGAAATCCAGCgg                               <  1:7722742/35‑1 (MQ=255)
     tAATCACATTGAGAAACCACACCGAAATCCAGCgg                               >  1:4791556/1‑35 (MQ=255)
     tAATCACATTGAGAAACCACACCGAAATCCAGCgg                               <  1:20122778/35‑1 (MQ=255)
      aatgttttttcaggtcgatagcctgcaaCAGCggg                              <  1:10178841‑M1/7‑1 (MQ=255)
      aaTCACATTGAGAAACCACACCGAAATCCAGCggg                              >  1:15187511/1‑35 (MQ=255)
       acgagcaaggccgtctgcgtgttggtgCAGcgggg                             <  1:19290705‑M1/8‑2 (MQ=255)
       accgtcggcctgatgaatttgccgtagCAGcgggg                             <  1:3942359‑M1/8‑2 (MQ=255)
       aTCACATTGAGAAACCACACCGAAATCCAGCGGGt                             <  1:11716072/35‑1 (MQ=255)
        tgttttttcaggtcgatagcctgcaaCAGCGGGTg                            <  1:8685552‑M1/9‑1 (MQ=255)
        tCACATTGAGAAACCACACCGAAATCCAGCGGGTg                            >  1:9799450/1‑35 (MQ=255)
        tCACATTGAGAAACCACACCGAAATCCAGCGGGTg                            >  1:8984980/1‑35 (MQ=255)
        tCACATTGAGAAACCACACCGAAATCCAGCGGGTg                            >  1:16490352/1‑35 (MQ=255)
        cgagcaaggccgtctgcgtgttggtgCAGGGGGTg                            <  1:13054510‑M1/9‑1 (MQ=255)
        cgagcaaggccgtctgcgtgttggtgCAGCGGGTg                            <  1:3516559‑M1/9‑1 (MQ=255)
         gagcaaggccgtctgcgtgttggtgCAGCGGGTgg                           <  1:9124574‑M1/10‑1 (MQ=255)
         gagcaaggccgtctgcgtgttggggCAGCGGGTgg                           <  1:16839408‑M1/10‑1 (MQ=255)
          gtcggcctgatgaatttgccgtagCAGCGGGTggg                          <  1:8485821‑M1/11‑1 (MQ=255)
           tcggcctgatgaatttgccgtagCAGCGGGTgggg                         <  1:1547205‑M1/12‑1 (MQ=255)
           tcggcctgatgaatttgccgtagCAGCGGGCgggg                         <  1:1479523‑M1/12‑1 (MQ=255)
           caTTGAGAAACCACACCGAAATCCAGCGGGTgggg                         >  1:11288141/1‑35 (MQ=255)
             ggcctgatgaatttgccgtagCAGCGGgtgggggg                       <  1:5400478‑M1/14‑3 (MQ=255)
             aaggccgtctgcgtgttggtgCAGCGGgtggggcg                       <  1:11891126‑M1/14‑3 (MQ=255)
              gcctgatgaatttgccgtagCAGCGggtggggggg                      <  1:16142693‑M1/15‑4 (MQ=255)
              aggccgtctgcgtgttggtgCAGCGggtggggcgg                      <  1:18086626‑M1/15‑4 (MQ=255)
               gagaAACCACAGCGAAATCCAGCGGGTGGGGAggg                     <  1:2958700/35‑1 (MQ=255)
               gagaAACCACACCGAAATCCAGCGGGTGGGGAggg                     <  1:3123831/35‑1 (MQ=255)
                agaAACCACACCGAAATCCAGCGGGTGGGGAgggg                    >  1:2092897/1‑35 (MQ=255)
                 gaAACCACACCGAAATCCAGCGGGTGGGGAggggg                   >  1:5628438/1‑35 (MQ=255)
                 ccgtctgcgtgttggtgCAGCGGGTGGGGCggggg                   <  1:1462629‑M1/18‑1 (MQ=255)
                 aggtcgatagcctgcaaCAGCGGGTGGGGGggggg                   <  1:1639495‑M1/18‑1 (MQ=255)
                  cgtctgcgtgttggtgCAGCGGGTGGGGggggggg                  <  1:1117218‑M1/19‑2 (MQ=255)
                  aaaCCACACCGAAATCCAGCTGGTGGGGAGgggga                  >  1:14834241/1‑35 (MQ=255)
                  aaaCCACACCGAAATCCAGCGGGTGGGGAGgggga                  >  1:1232988/1‑35 (MQ=255)
                  aaaCCACACCGAAATCCAGCGGGTGGGGAGgggga                  >  1:8329016/1‑35 (MQ=255)
                   aaCCACACCGAAATCCAGCGGGTGGGGAGggggat                 <  1:9414602/35‑1 (MQ=255)
                    aCCACACCGAAATCCAGCGGGTGGGGAGggggatg                >  1:8273181/1‑35 (MQ=255)
                     ccACACCGAAATCCAGCGGGTGGGGAGggggatgg               <  1:61864/35‑1 (MQ=255)
                     ccACACCGAAATCCAGCGGGTGGGGAGggggatgg               <  1:6770471/35‑1 (MQ=255)
                     ccACACCGAAATCCAGCGGGTGGGGAGggggatgg               <  1:19829792/35‑1 (MQ=255)
                     ccACACCGAAATCCAGCGGGTGGGGAGggggatgg               <  1:18514231/35‑1 (MQ=255)
                      cacaCCGAAATCCAGCGGGTGGGGAGggggatggg              <  1:9294680/35‑1 (MQ=255)
                       acacCGAAATCCAGCGGGTGGGGAGggggatgggg             >  1:1624157/1‑35 (MQ=255)
                       acacCGAAATCCAGCGGGTGGGGAGggggatgggg             <  1:18178757/35‑1 (MQ=255)
                       acacCGAAATCCAGCGGGTGGGGAGggggatgggg             <  1:9060910/35‑1 (MQ=255)
                        cacCGAAATCCAGCGGGTGGGGAGggggatgggga            <  1:16629486/35‑1 (MQ=255)
                        cacCGAAATCCAGCGGGTGGGGAGggggatgggga            <  1:1992328/35‑1 (MQ=255)
                         acCGAAATCCAGCGGGTGGGGAGggggattgggct           >  1:1405346/1‑33 (MQ=38)
                         acCGAAATCCAGCGGGTGGGGAGggggatggggat           <  1:2251588/35‑1 (MQ=255)
                         acCGAAATCCAGCGGGTGGGGAGggggatggggat           >  1:2493887/1‑35 (MQ=255)
                          ccGAAATCCAGCGGGTGGGGAGGGGGATGGGGATc          <  1:17748258/35‑1 (MQ=255)
                          ccGAAATCAAGCGGGTGGGGAGGGGGATGGGGATc          <  1:10956578/35‑1 (MQ=255)
                          ccGAAATCAAGCGGGTGGGGAGGGGGATGGGGATc          <  1:8013252/35‑1 (MQ=255)
                           cGAAATCCAGCGGGTGGGGAGGGGGATGGGGATCa         <  1:18266008/35‑1 (MQ=255)
                           cGAAATCCAGCGGGTGGGGAGGGGGATGGGGATCa         >  1:1744872/1‑35 (MQ=255)
                            gAAATCCAGCGGGTGGGGAGGGGGATGGGGATCaa        >  1:15837827/1‑35 (MQ=255)
                             aaaTCCAGCGGGTGGGGAGGGGGATGGGGATCAAc       <  1:2809098/35‑1 (MQ=255)
                              aaTCCAGCGGGTGGGGAGGGGGATGGGGATCAAcc      <  1:3196712/35‑1 (MQ=255)
                               aTCCAGCGGGTGGGGAGGGGGATGGGGATCAACCa     <  1:3044747/35‑1 (MQ=255)
                               aTCCAGCGGGTGGGGAGGGGGATGGGGATCAACCa     >  1:11409086/1‑35 (MQ=255)
                               aTCCAGCGGGTGGGGAGGGGGATGGGGATCAACCa     <  1:4279207/35‑1 (MQ=255)
                               aTCCAGCGGGTGGGGAGGGGGATGGGGATCAACCa     <  1:5436798/35‑1 (MQ=255)
                                tCCAGCGGGTGGGGAGGGGGATGGGGATCAACCAg    <  1:10317080/35‑1 (MQ=255)
                                tCCAGCGGGTGGGGAGGGGGATGGGGATCAACCAg    <  1:5762402/35‑1 (MQ=255)
                                tCCAGCGGGTGGGGAGGGGGATGGGGATCAACCAg    <  1:3809827/35‑1 (MQ=255)
                                tCCAGCGGGTGGGGAGGGGGATGGGGATCAACCAg    >  1:17875728/1‑35 (MQ=255)
                                  |                                  
GGAAGTAATCACATTGAGAAACCACACCGAAATCCAGCGGGTGGGGAGGGGGATGGGGATCAACCAGCG  >  REL606/924234‑924302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.