New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 42237147 (1.430)9 (0.100) 4/42 NT 5.9% pseudogene (740/885 nt) caiB crotonobetainyl‑CoA:carnitineCoA‑transferase; b0038_1
?REL606 2742547 = 160 (1.780)coding (1555/1827 nt) hycC NADH dehydrogenase subunit N

CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/42201‑42237
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  >  REL606/2742547‑2742580
                                                                       
CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTT                                      >  1:1557764/1‑35
CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTT                                      <  1:17573246/35‑1
CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTT                                      >  1:1136634/1‑35
CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTT                                      >  1:18771730/1‑35
CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTT                                      <  1:12923315/35‑1
 CGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTC                                     <  1:7223770/35‑1
 CGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTC                                     <  1:4087746/35‑1
 CGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTC                                     <  1:3431224/35‑1
 CGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTC                                     <  1:13884653/35‑1
 CGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTC                                     <  1:337090/35‑1
 CGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTC                                     >  1:13699805/1‑35
  GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCt                                    >  1:11395959/1‑34
  GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG                                    <  1:16382378/35‑1
  GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG                                    >  1:18595588/1‑35
  GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG                                    <  1:13058820/35‑1
  GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG                                    <  1:12920108/35‑1
  GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG                                    >  1:4258822/1‑35
  GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG                                    <  1:5981880/35‑1
  GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG                                    <  1:565815/35‑1
       AGATTTGTCCGGGGTTATTTTTGAATTTCTCCATg                               >  1:4878005/1‑34
                       ATTTTTGAAGTTCGCCATAATGATGAATGGCAGCA               <  1:3998121/35‑1
                        cTTTTGAAATTCGCCATAATGATGAATGGCAGCAG              <  1:803359/34‑1
                         TTTTGAATTTCGCCATAATGATGAATGGCAGCAGC             <  1:19001636/35‑1
                         TTTTGAATTTCGCCATAATGATGAATGGCAGCAGC             <  1:6995640/35‑1
                         TTTTGAAATTCGCCATAATGATGAATGGCAGCAGC             <  1:10732423/35‑1
                         TTTTAAATTTCGCCATAATGATGAATGGCAGCAGC             <  1:8179819/35‑1
                          TTTGAAATTCGCCATAATGATGAATGGCAGCAGCG            <  1:16193461/35‑1
                           TTGAAATTCGCCATAATGATGAATGGCAGCAGCGG           <  1:5294730/35‑1
                           TTGAAATTCGCCATAATGATGAATGGCAGCAGCGG           <  1:7247186/35‑1
                            gGAAATTCGCCATAATGATGAATGGCAGCAGCGGG          <  1:12096555/34‑1
                             aAATTTCGCCATAATGATGAATGGCAGCAGCGGGC         <  1:671730/34‑1
                             GAAATTCGCCATAATGATGAATGGCAGCAGCGGGC         <  1:15714091/35‑1
                              aaaTTCGCCATAATGATGAATGGCAGCAGCGGGCA        <  1:773337/32‑1
                              aaaTTCGCCATAATGATGAATGGCAGCAGCGGGCA        <  1:14563348/32‑1
                               aaTTCGCCATAATGATGAATGGCAGCAGCGGGCAG       <  1:3874168/33‑1
                                aTTCGCCATAATGATGAATGGCAGCAGCGGGCAGG      <  1:20302117/34‑1
                                aTTCGCCATAATGATGAATGGCAGCAGCGGGCAGG      <  1:15013642/34‑1
                                aTTCGCCATAATGATGAATGGCAGCAGCGGGCAGG      <  1:16439675/34‑1
                                TTTCGCCATAATGATGAATGGCAGCAGCGGGCAGG      <  1:10806435/35‑1
                                TTTCGCCATAATGATGAATGGCAGCAGCGGGCAGG      <  1:13313985/35‑1
                                TTTCGCCATAATGATGAATGGCAGCAGCGGGCAGG      <  1:20120039/35‑1
                                 TTCGCCATAATGATGAATGGCAGCAGCGGGCAGGC     <  1:14178318/35‑1
                                 TTCGCCATAATGATGAATGGCAGCAGCGGGCAGGC     <  1:8723924/35‑1
                                  TCGCCATAATGATGAATGGCAGCAGCTGGCAGGCA    >  1:16284369/1‑35
                                  TCGCCATAATGATGAATGGCAGCAGCGGGCCGGCA    >  1:6699321/1‑35
                                  TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA    >  1:12623554/1‑35
                                  TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA    >  1:8424072/1‑35
                                  TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA    <  1:6614414/35‑1
                                  TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA    <  1:2057250/35‑1
                                  TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA    <  1:11289865/35‑1
                                  TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA    <  1:16878679/35‑1
                                  TCGCCATAATGATGAATGGCAGCAGCGGGCAGGCA    <  1:18809926/35‑1
                                   CGCCATAATGATGAATGGCAGGAGCGGGCAGGCAA   <  1:15858294/35‑1
                                   CGCCATAATGATGAATGGCAGCAGCGGGGAGGCAA   >  1:17014804/1‑35
                                   CGCCATAATGATGAATGGCAGCAGCGGGCAGGgca   >  1:308626/1‑32
                                   CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA   >  1:4194704/1‑35
                                   CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA   >  1:11148847/1‑35
                                   CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA   <  1:4767619/35‑1
                                   CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA   >  1:3071267/1‑35
                                   CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA   >  1:2906942/1‑35
                                   CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA   <  1:16783929/35‑1
                                   CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA   <  1:19292010/35‑1
                                   CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA   <  1:18264365/35‑1
                                   CGCCATAATGATGAATGGCAGCAGCGGGCAGGCAA   <  1:17849212/35‑1
                                   CGCCATAATGATGAAGGGCAGCAGCGGGCAGGCAA   <  1:20420459/35‑1
                                   CGCCATAAGGATGAATGGCAGCAGCGGGCAGGCAA   >  1:15951629/1‑35
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGGAAT  >  1:19025149/1‑35
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAa  >  1:6314685/1‑34
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAa  >  1:7369878/1‑34
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  >  1:9942100/1‑35
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  >  1:9026311/1‑35
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  <  1:12679657/35‑1
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  <  1:13303529/35‑1
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  <  1:14199146/35‑1
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  >  1:7987062/1‑35
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  >  1:14541621/1‑35
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  <  1:17450893/35‑1
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  <  1:17590994/35‑1
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  <  1:20433245/35‑1
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  <  1:3221829/35‑1
                                    GCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  >  1:4259163/1‑35
                                    GCCATAATGATGAATAGCAGCAGCGGGCAGGCAAT  <  1:2592241/35‑1
                                    GCCATAATGATAAATGGCAGCAGCGGGCAGGCAAT  <  1:13087907/35‑1
                                    GCCATAATGACGAATGGCAGCAGCGGGCAGGCAAT  >  1:5451252/1‑35
                                                                       
CCGCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/42201‑42237
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgCCATAATGATGAATGGCAGCAGCGGGCAGGCAAT  >  REL606/2742547‑2742580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.