New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 187382 =110 (1.070)13 (0.150) 3/40 NT 14.9% coding (530/813 nt) yaeI predicted phosphatase
?REL606 3669194 = 57 (0.670)coding (1242/2031 nt) malS periplasmic alpha‑amylase precursor

GGTGACTTATGGGCCGGACAATGCAAACCACCTCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/187419‑187382
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATG  >  REL606/3669194‑3669227
                                                                        
GGTGACTTATGGGCCGGACAATGCAAACCACCTCC                                       >  1:12872145/1‑35
GGTGACTTATGGGCCGGACAATGCAAACCACCTCC                                       >  1:20237073/1‑35
GGTGACTTATGGGCCGGACAATGCAAACCACCTCC                                       >  1:14848569/1‑35
 GTGACTTATGGGCCGGACAATGCAAACCACCTCCC                                      <  1:8602492/35‑1
  TGACTTATGGGCCGGACAATGCAAACCACCTCCCG                                     <  1:5206560/35‑1
  TGACTTATGGGCCGGACAATGCAAACCACCTCCCG                                     >  1:12193150/1‑35
  TGACTTATGGGCCGGACAATGCAAACCACCTCCCG                                     >  1:17114070/1‑35
  TGACTTATGGGCCGGACAATGCAAACCACCTCCCG                                     >  1:2658420/1‑35
  TGACTGATGGGCCGGACAATGCAAACCACCTCCCG                                     <  1:9033161/35‑1
   GACTTATGGGCCGGACAATGCAAACCACCTCCCGC                                    <  1:2555609/35‑1
   GACTTATGGGCCGGACAATGCAAACCACCTCCCGC                                    >  1:7048106/1‑35
   GACTTATGGGCCGGACAATGCAAACCACCTCCCGC                                    >  1:3168509/1‑35
                     ccCAAACCACCTCCCGCTTCTGGTCTGCCGGTGTT                  <  1:5142193/33‑1
                     ccCAAACCACCTCCCGCTTCTGGTCTGCCGGTGTT                  <  1:19612017/33‑1
                     ccCAAACCACCTCCCGCTTCTGGTCTGCCGGTGTT                  <  1:4046951/33‑1
                      cCAAACCACCTCCCGCTTCTGGTCTGCAGGTGTTC                 <  1:16269114/34‑1
                       CAAACCACCTCCCGCTTCTGGTCTGCCGGTGTTCT                <  1:294200/35‑1
                       CAAACCACCTCCCGCTTCTGGTCTGCCGGTGTTCT                <  1:16125137/35‑1
                        AAACCACCTCCCGCTTCTGGTCTGCCGGTGTTCTA               <  1:16852821/35‑1
                        AAACCACCTCCCGCTTCTGGTCTGCCGGTGTTCTA               <  1:13339535/35‑1
                        AAACAACCTCCCGCTTCTGGTCTGCCGGTGTTCTA               <  1:13435265/35‑1
                        AAAACACCTCCCGCTTCTGGTCTGCCGGTGTTCTA               <  1:16264115/35‑1
                         AACCCCCTCCCGCTTCTGGTCTGCCGGTGTTCTAT              <  1:18360853/35‑1
                         AACCACCTCCCGCTTCTGGTCTGCCGGTGTTCTAT              <  1:5416776/35‑1
                         AACCACCTCCCGCTTCTGGTCTGCCGGTGTTCTAT              <  1:16290038/35‑1
                            ccCCTCCCGCTTCTGGTCTGCCGGTGTTCTATAAA           <  1:14821356/33‑1
                             ACCCCCCGCTTCTGGTCTGCCGGTGTTCTATAAAA          <  1:11961795/35‑1
                              CCTCCCGCTTCTGGTCTGCCGGTGTTCTATAAAAA         <  1:15528311/35‑1
                               ccCCCGCTTCTGGTCTGCCGGTGTTCTATAAAAAC        <  1:848831/33‑1
                                cCCCGCTTCTGGTCTGCCGGTGTTCTATAAAAACA       <  1:20355427/34‑1
                                cCCCGCTTCTGGTCTGCCGGTGTTCTATAAAAACA       <  1:5869020/34‑1
                                cCCCGCTTCTGGTCTGCCGGTGTTCTATAAAAACA       <  1:3339635/34‑1
                                  CCGCTTCTGGTCTGCCGGTGTTGTATAAAAACAAA     >  1:5217732/1‑35
                                  CCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAA     >  1:1899900/1‑35
                                  CCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAA     >  1:20128452/1‑35
                                  CCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAA     <  1:18250113/35‑1
                                  CCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAA     <  1:2737740/35‑1
                                  CCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAA     <  1:14505979/35‑1
                                  CCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAA     >  1:3863970/1‑35
                                   CGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAA    >  1:2318062/1‑35
                                   CGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAA    >  1:19512655/1‑35
                                   CGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAA    >  1:16766596/1‑35
                                   CGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAA    >  1:16106640/1‑35
                                   CGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAA    <  1:15223935/35‑1
                                    GCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAAT   <  1:1617130/35‑1
                                    GCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAAT   <  1:15778419/35‑1
                                    GCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAAT   <  1:8784817/35‑1
                                     CTTCTGGTCTGCCTGTGTTCTATAAAAACAAAATG  >  1:9430612/1‑35
                                     CTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATG  >  1:13392840/1‑35
                                     CTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATG  <  1:12769935/35‑1
                                                                        
GGTGACTTATGGGCCGGACAATGCAAACCACCTCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/187419‑187382
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATG  >  REL606/3669194‑3669227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.