New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1112140 = | NA (NA) | 14 (0.140) | 5/48 | NT | 35.9% | noncoding (81/88 nt) | serX | tRNA‑Ser |
? | REL606 | = 3173882 | 25 (0.240) | coding (905/1245 nt) | ygjU | sodium:serine/threonine symporter |
ACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAA > REL606/1112106‑1112155 | aCTTTCGTACGGGCTTTTTTTTAAATATGGCGGTg < 1:19057832/35‑1 (MQ=255) cTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGa < 1:7512431/35‑1 (MQ=255) cTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGa < 1:6099722/35‑1 (MQ=255) cTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGa < 1:15562274/35‑1 (MQ=255) tttCGTACGGGCTTTTTTTTAAATATGGCGGTGAg < 1:12331929/35‑1 (MQ=255) tttCGTACGGGCTTTTTTTTAAATATGGCGGTGAg < 1:6568825/35‑1 (MQ=255) ttCGTACGGGCTTTTTTTTAAATATGGCGGTGAgg < 1:4137375/35‑1 (MQ=255) tCGTACGGGCTTTTTTTTAAATATGGCGGGGGggg > 1:12072989/1‑35 (MQ=21) tCGTACGGGCTTTTTTTTAAATATGGCGGGGGggg > 1:19919050/1‑35 (MQ=21) cGTACGGGCTTTTTTTTAAATATGGCGGTGAgggg < 1:13090109/35‑1 (MQ=255) cGTACGGGCTTTTTTTTAAATATGGCGGGGGgggg > 1:257047/1‑35 (MQ=21) cGTACGGGCTTTTTTTTAAATATGGCGGGGGgggg > 1:15864048/1‑35 (MQ=21) gTACGGGCTTTTTTTTAAATATGGCGGTGAggggg < 1:16871644/35‑1 (MQ=255) gTACGGGCTTTTTTTTAAATATGGCGGGGGggggg > 1:11112339/1‑35 (MQ=21) gTACGGGCTTTTTTTTAAATATGGCGGGGGggggg > 1:4259606/1‑35 (MQ=21) tACGGGCTTTTTTTTAAATATGGCGGTGAgggggg < 1:8074958/35‑1 (MQ=255) aCGGGCTTTTTTTTAAATATGGCGGTGAggggggg < 1:16813159/35‑1 (MQ=255) aCGGGCTTTTTTTTAAATATGGCGGTGAggggggg < 1:14075126/35‑1 (MQ=255) tctgCTTTTTTTTAAATATGGCGGTGAGGGGGGGa < 1:12718214/32‑1 (MQ=255) cGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGa < 1:20054451/35‑1 (MQ=255) cGGGCTTTTTTTTAAATATGGCGGGGGgggggggg > 1:10054781/1‑34 (MQ=21) cGGGCTTTTTTTTAAATATGGCGGGGGgggggggg > 1:5842583/1‑34 (MQ=21) cGGGCTTTTTTTTAAATATGGCGGGGGgggggggg > 1:19744288/1‑34 (MQ=21) cGGGCTTTTTTTTAAATATGGCGGGGGgggggggg > 1:19415424/1‑34 (MQ=21) gggCTTTTTTTTAAATATGGCGGTGAGGGGGGGAt < 1:20398084/35‑1 (MQ=255) gggCTTTTTTTTAAATATGGCGGGGGggggggggg > 1:3148308/1‑33 (MQ=18) gggCTTTTTTTTAAATATGGCGGGGGggggggggg > 1:13732365/1‑33 (MQ=18) gggCTTTTTTTTAAATATGGCGGGGGggggggggg > 1:4528432/1‑33 (MQ=18) gggCTTTTTTTTAAATATGGCGGGGGggggggggg > 1:5842300/1‑33 (MQ=18) gggCTTTTTTTTAAATATGGCGGGGGggggggggg > 1:2032715/1‑33 (MQ=18) ggCTTTTTTTTAAATATGGCGGGGGgggggggggg > 1:5933179/1‑32 (MQ=18) cTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCg < 1:14281599/35‑1 (MQ=255) ttttttttAAATATGGCGGTGAGGGGGGGATTCGa < 1:3697806/35‑1 (MQ=255) ttttttttAAATATGGCGGTGAGGGGGGGATTCGa < 1:11591409/35‑1 (MQ=255) tttttttAAATATGGCGGTGAGGGGGGGATTCGaa < 1:2261714/35‑1 (MQ=40) tttttttAAATATGGCGGTGAGGGGGGGATTCGaa < 1:13373054/35‑1 (MQ=40) | ACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAA > REL606/1112106‑1112155 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |