New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1306117 =70 (0.680)13 (0.140) 4/44 NT 14.3% coding (123/1461 nt) cls cardiolipin synthetase
?REL606 4085858 = 92 (0.980)intergenic (+56/‑93) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F

AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1306152‑1306117
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGGGTTTTTTTTATC  >  REL606/4085858‑4085872
                                                   
AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT                  <  1:5455524/35‑1
AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT                  <  1:11880989/35‑1
AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT                  <  1:9132240/35‑1
AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT                  >  1:19479554/1‑35
AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT                  <  1:16779186/35‑1
AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT                  >  1:19022839/1‑35
AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT                  <  1:18847068/35‑1
 AACGACGCGCAGTTCCCTCCGCGATGGCCTGGCTG                 >  1:5157731/1‑35
 AACGACGCGCAGTTCCCTCCGCGATGGCCTGGCTG                 >  1:2289914/1‑35
 AACGACGCGCAGTTCCCTCCGCGATGGCCTGGCTG                 <  1:15948393/35‑1
 AACGACGCGCAGTTCCCTCCGCGATGGCCTGGCTG                 <  1:17816486/35‑1
   CGACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGt               >  1:11228668/1‑34
   CGACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGG               >  1:4683898/1‑35
   CGACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGG               >  1:4614712/1‑35
   CGACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGG               >  1:10384456/1‑35
    GACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGG              >  1:17602010/1‑35
    GACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGG              >  1:1483987/1‑35
    GACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGG              >  1:13406739/1‑35
    GACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGG              >  1:12083878/1‑35
     ACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGGG             >  1:6593275/1‑35
     ACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGGG             >  1:1197586/1‑35
      CGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGg            >  1:8349529/1‑34
       GCGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGgt           >  1:4291942/1‑33
        CGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGgtg          >  1:7444298/1‑32
        CGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGggt          >  1:18458544/1‑32
        CGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGTTg          >  1:2733948/1‑34
        CGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGGTT          >  1:9057604/1‑35
        CGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGGTT          >  1:14261561/1‑35
         GCAGTTCCCTCCGCGATGGCCTGGCTGGGGGGTTT         >  1:1968520/1‑35
          CAGTTCCCTCCGCGATGGCCTGGCTGGGGGTTTTT        >  1:6439238/1‑35
          CAGTTCCCTCCGCGATGGCCTGGCTGGGGGTTATT        >  1:2900954/1‑35
            GTTCCCTCCGCGATGGCCTGGCTGGGGGTTTTTTT      >  1:5283836/1‑35
            GTTCCCTCCGCGATGGCCTGGCTGGGGGGTTTTTT      >  1:12491167/1‑35
              TCCCTCCGCGATGGCCTGGCTGGGGGGTTTTTTTA    >  1:17184403/1‑35
               CCCTCCGCGATGGCCTGGCTGGGGGTTTTTTTTAT   >  1:18599699/1‑35
               CCCTCCGCGATGGCCTGGCTGGGGGGTTTTTTTAT   >  1:6429552/1‑35
                CCTCCGCGATGGCCTGGCTGGGGGTTTTTTTTATt  >  1:9515210/1‑34
                CCTCCGCGATGGCCTGGCTGGGGGGTTTTTTTATt  >  1:9171267/1‑34
                                                   
AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1306152‑1306117
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGGGTTTTTTTTATC  >  REL606/4085858‑4085872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.