New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1349554 =66 (0.640)10 (0.130) 4/36 NT 18.6% intergenic (‑146/+222) fabI/ycjD enoyl‑(acyl carrier protein) reductase/hypothetical protein
?REL606 = 3574369 38 (0.490)coding (1504/2043 nt) prlC oligopeptidase A

Only 100 of 148 total aligned reads displayed.

AGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAACCC  >  REL606/1349520‑1349588
                                  |                                  
caggctcccagcaccagttttccataaactgactc                                    <  1:594455‑M1/1‑1 (MQ=255)
aGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGc                                    >  1:7667764/1‑35 (MQ=255)
aGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGc                                    <  1:1686412/35‑1 (MQ=255)
aGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGc                                    <  1:19081025/35‑1 (MQ=255)
aGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGc                                    <  1:9685037/35‑1 (MQ=255)
 gCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCg                                   <  1:10804958/35‑1 (MQ=255)
 gCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCg                                   <  1:15478128/35‑1 (MQ=255)
 agtctcccagcaccagttttccataaactgactCg                                   >  1:315647‑M1/34‑35 (MQ=255)
 aggctcccagcaccagttttccataaactgactCg                                   <  1:4473084‑M1/2‑1 (MQ=255)
 aggctcccagcaccagttttccataaactgactCg                                   <  1:16756993‑M1/2‑1 (MQ=255)
 aggctcccagcaccagttttccataaactgactCg                                   <  1:8409355‑M1/2‑1 (MQ=255)
 aggctcccagcaccagttttccataaactgactCg                                   >  1:17175787‑M1/34‑35 (MQ=255)
 aggatcccagcaccagttttccataaactgactCg                                   >  1:9295601‑M1/34‑35 (MQ=255)
  ggctcccagcaccagttttccataaactgactCgg                                  <  1:3605327‑M1/3‑1 (MQ=255)
  ggctcccagcaccagttttccataaactgactCgg                                  >  1:11599565‑M1/33‑35 (MQ=255)
  cTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCgg                                  >  1:15034809/1‑35 (MQ=255)
  cTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCgg                                  >  1:19884286/1‑35 (MQ=255)
  cTATAGTTGCCAGGTCCGACAGGAGCAGGCTGCgg                                  <  1:4204050/35‑1 (MQ=255)
   tataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGc                                 >  1:8306999/1‑35 (MQ=255)
   tataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGc                                 <  1:8492765/35‑1 (MQ=255)
   tataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGc                                 <  1:2187191/35‑1 (MQ=255)
   tataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGc                                 <  1:378111/35‑1 (MQ=255)
   tataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGc                                 <  1:10606507/35‑1 (MQ=255)
   gctcccagcaccagttttccataaactgactCGGc                                 <  1:13374989‑M1/4‑1 (MQ=255)
   gctcccagcaccagttttccataaactgactCGGc                                 >  1:335257‑M1/32‑35 (MQ=255)
   gctcccagcaccagttttccataaactgactCGGc                                 <  1:15582757‑M1/4‑1 (MQ=255)
    ctcccagcaccagttttccataaactgactCGGCa                                <  1:8262611‑M1/5‑1 (MQ=255)
    ctcccagcaccagttttccataaactgactCGGCa                                <  1:12985701‑M1/5‑1 (MQ=255)
    ataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCa                                <  1:12743456/35‑1 (MQ=255)
    ataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCa                                >  1:6078453/1‑35 (MQ=255)
    ataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCa                                >  1:7440003/1‑35 (MQ=255)
     tcccagcaccagttttccataaactgactCGGCAg                               <  1:11582145‑M1/6‑1 (MQ=255)
     tcccagcaccagttttccataaactgactCGGCAg                               >  1:16123231‑M1/30‑35 (MQ=255)
     tcccagcaccagttttccataaactgactCGGCAg                               <  1:20057103‑M1/6‑1 (MQ=255)
     taGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAg                               >  1:15716331/1‑35 (MQ=255)
     taGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAg                               <  1:11834659/35‑1 (MQ=255)
     taGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAg                               >  1:17329850/1‑35 (MQ=255)
      tgTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgn                              <  1:4833544/34‑1 (MQ=255)
      cccagcaccagttttccataaactgactCGGCAgg                              <  1:15692893‑M1/7‑1 (MQ=255)
      aGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgg                              <  1:19324640/35‑1 (MQ=255)
      aGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgg                              <  1:17043146/35‑1 (MQ=255)
      aGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgg                              <  1:14739969/35‑1 (MQ=255)
       gTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAggg                             >  1:853651/1‑35 (MQ=255)
       gTTGCCAGGTCCGACCGGAGAAGGCTGCGGCAggg                             <  1:18842897/35‑1 (MQ=255)
       ccagcaccagttttccataaactgactCGGCAggg                             <  1:10632633‑M1/8‑1 (MQ=255)
       ccagcaccagttttccataaactgactCGGCAggg                             <  1:4546702‑M1/8‑1 (MQ=255)
        ttGCCAGGTCCGACCGGAGCAGGCTGCGGCAgggg                            <  1:6725099/35‑1 (MQ=255)
        ttGCCAGGTCCGACCGGAGCAGGCTGCGGCAgggg                            >  1:13093582/1‑35 (MQ=255)
        cagcaccagttttccataaactgactCGGCAgggg                            <  1:4121101‑M1/9‑1 (MQ=255)
         tGCCAGGTCCGACCGGAGCAGGCTGCGGCAggggg                           >  1:11344249/1‑35 (MQ=255)
         tGCCAGGTCCGACCGGAGCAGGCTGCGGCAggggg                           <  1:6363807/35‑1 (MQ=255)
         tGCCAGGTCCGACCGGAGCAGGCTGCGGCAcgggg                           >  1:4811569/1‑35 (MQ=255)
         agcaccagttttccataaactgactCGGCAggggg                           <  1:19629439‑M1/10‑1 (MQ=255)
          gcaccagttttccataaactgactCGGCAgggggg                          <  1:754006‑M1/11‑1 (MQ=255)
          gCCAGGTCCGACCGGAGCAGGCTGCGGCAgggggg                          <  1:13281633/35‑1 (MQ=255)
          gCCAGGTCCGACCGGAGCAGGCTGCGGCAgggggg                          >  1:16848548/1‑35 (MQ=255)
           ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg                         <  1:15582865/35‑1 (MQ=255)
           ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg                         <  1:16468888/35‑1 (MQ=255)
           ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg                         >  1:8298771/1‑35 (MQ=255)
           ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg                         <  1:12108911/35‑1 (MQ=255)
           caccagttttccataaactgactCGgcaggggtgg                         <  1:14999080‑M1/12‑4 (MQ=255)
           caccagttttccataaactgactCGGCAggggggg                         <  1:3555004‑M1/12‑1 (MQ=255)
            cAGGTCCGACCGGAGCAGGCTGCGGCAgggggggg                        >  1:15183739/1‑34 (MQ=255)
            cAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgc                        <  1:9004347/35‑1 (MQ=255)
            cAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgc                        <  1:5718092/35‑1 (MQ=255)
            accagttttccataaactgactCGGCagggggggg                        <  1:15511621‑M1/13‑2 (MQ=255)
            accagttttccataaactgactCGGCAGGGGGGgc                        <  1:17329054‑M1/13‑1 (MQ=255)
            accagttttccataaactgactCGGCAGGGGGGgc                        <  1:764330‑M1/13‑1 (MQ=255)
             aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcg                       >  1:13964604/1‑35 (MQ=255)
             aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcg                       >  1:5485782/1‑35 (MQ=255)
             aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcg                       <  1:13779952/35‑1 (MQ=255)
             aGGTCCGACCCGAGCAGGCTGCGGCAGGGGGGgcg                       >  1:14697133/1‑35 (MQ=255)
              ggTCCGACCGGAGCAGGCTGCTGCAGGGGGGgcgc                      >  1:7161058/1‑35 (MQ=255)
               gTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCt                     <  1:9285842/35‑1 (MQ=255)
               gTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCt                     <  1:8089477/35‑1 (MQ=255)
                tCCGACCGGAGCAGGCTGCGGCAGGGGGGgggcct                    >  1:11549064/1‑33 (MQ=37)
                tCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCtt                    <  1:14264973/35‑1 (MQ=255)
                 ttttccataaactgactCGGCAGGGGGGGCgctcc                   <  1:13773806‑M1/18‑3 (MQ=255)
                 ccGACCGGAGCAGGCTGCGGCAGGGGGGGGGCttt                   >  1:16279467/1‑35 (MQ=255)
                   gACCGGAGCAGGCTGCGGCAGGGGGGGGGCgtttt                 >  1:9821861/1‑34 (MQ=37)
                   gACCGGAGCAGGCTGCGGCAGGGGGGGGGCgtttt                 >  1:6356249/1‑34 (MQ=37)
                    aCCGGAGCAGGCTGCGGCAGGGGGGGGGCcttttt                >  1:12804149/1‑33 (MQ=25)
                    aCCGGAGCAGGCTGCGGCAGGGGGGGCGCTTTTcc                <  1:37706/35‑1 (MQ=255)
                    aCCGGAGCAGGCTGAGGCAGGGGGGGCGCTTTTcc                <  1:14018712/35‑1 (MQ=255)
                     ccGGAGCAGGCTGCGGCAGGGGGGGGGGttttttt               >  1:19698810/1‑32 (MQ=25)
                     ccGGAGCAGGCTGCGGCAGGGGGGGGGCctttttt               >  1:1699499/1‑32 (MQ=25)
                        gAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTc            <  1:4466059/35‑1 (MQ=255)
                         aggaGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCa           <  1:17838833/32‑1 (MQ=255)
                         aGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCa           <  1:13279778/35‑1 (MQ=255)
                          gCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCAc          <  1:1942769/35‑1 (MQ=255)
                          gCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCAc          <  1:2827788/35‑1 (MQ=255)
                            aGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCAccc        <  1:13581018/35‑1 (MQ=255)
                             ggCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCt       <  1:14436043/35‑1 (MQ=255)
                              gCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTa      <  1:2363207/35‑1 (MQ=255)
                              gCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTa      <  1:3315506/35‑1 (MQ=255)
                               cTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTaa     <  1:7972947/35‑1 (MQ=255)
                               cTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTaa     <  1:15810175/35‑1 (MQ=255)
                                 gCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAAcc   <  1:8836544/35‑1 (MQ=255)
                                  CGGCAGGGGGGGCGCTTTTCCCCTCACCCTAAccc  >  1:6186598‑M1/1‑35 (MQ=255)
                                  CGGCAGGGGGGGCGCTTTTCCCATCACCCTAAccc  >  1:4555014‑M1/1‑35 (MQ=255)
                                  |                                  
AGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAACCC  >  REL606/1349520‑1349588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.