New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 4551446NA (NA)9 (0.090) 8/46 NT 7.0% noncoding (768/768 nt) IS1 repeat region
?REL606 4560889 = 119 (1.210)coding (135/1590 nt) hsdM DNA methylase M

Only 100 of 183 total aligned reads displayed.

ATAAAACACTATCAATAAGTTGGAGTCATTACCACGGCTTTTAAAGGCTTAACCCCTTATCTGCCCA  >  REL606/4551414‑4551480
                                |                                  
aTAAAACACTATCAATAAGTTGGAGTCATTACCAc                                  >  1:3193064/1‑35 (MQ=32)
aTAAAACACTATCAATAAGTTGGAGTCATTACCAc                                  >  1:10054468/1‑35 (MQ=32)
aTAAAACACTATCAATAAGTTGGAGTCATTACCAc                                  >  1:12588619/1‑35 (MQ=32)
aTAAAACACTATCAATAAGTTGGAGTCATTACCAc                                  >  1:11871632/1‑35 (MQ=32)
 tAAAACACTATCAATAAGTTGGAGTCATTACCACg                                 >  1:6283901/1‑35 (MQ=35)
 tAAAACACTATCAATAAGTTGGAGTCATTACCACg                                 >  1:6075821/1‑35 (MQ=35)
   aaaCCCTATCAATAAGTTGGAGTCATTACCACGGc                               <  1:12435908/35‑1 (MQ=255)
   aaaCACTATCAATAAGTTGGAGTCATTACCACGGc                               >  1:2442440/1‑35 (MQ=38)
    aaCACTATCAATAAGTTGGAGTCATTCCCACGGCt                              <  1:9154700/35‑1 (MQ=255)
    aaCACTATCAATAAGTTGGAGTCATTACCACGGCt                              >  1:12545246/1‑35 (MQ=40)
     acacTATCAATAAGTTGGAGTCATTACCACGGCtt                             <  1:15422909/35‑1 (MQ=255)
     acacTATCAATAAGTTGGAGTCATTACCACGGCtt                             >  1:2838125/1‑35 (MQ=255)
      cacTATCAATAAGTTGGAGTCATTACCACGGCttt                            <  1:16309948/35‑1 (MQ=255)
       acTATCAATAAGTTGGAGTCATTACCACGGCtttt                           <  1:14699682/35‑1 (MQ=255)
       acTATCAATAAGTTGGAGTCATTACCACGGCtttt                           >  1:7592138/1‑35 (MQ=255)
        cTATCAATAAGTTGGAGTCATTACCACGGCTTTTa                          >  1:11048750/1‑35 (MQ=255)
        cTATCAATAAGTTGGAGTCATTACCACGGCTTTTa                          >  1:5250693/1‑35 (MQ=255)
        cTATCAATAAGTTGGAGTCATTACCACGGCTTTTa                          >  1:7886718/1‑35 (MQ=255)
         tATCAATAAGTTGGAGTCATTACCACGGCTTTTaa                         >  1:19435663/1‑35 (MQ=255)
         tATCAATAAGTTGGAGTCATTACCACGGCTTTTaa                         >  1:388799/1‑35 (MQ=255)
          aTCAATAAGTTGGAGTCATTACCACGGCTTTTaaa                        <  1:13003636/35‑1 (MQ=255)
          aTCAATAAGTTGGAGTCATTACCACGGCTTTTaaa                        >  1:8457011/1‑35 (MQ=255)
          aTCAATAAGTTGGAGTCATTACCACGGCTTTTaaa                        >  1:11519462/1‑35 (MQ=255)
          aTCAATAAGTTGGAGTCATTACCACGGCTTTTaaa                        <  1:17254042/35‑1 (MQ=255)
           tCAATAAGTTGGAGTCATTACCACGGCTTTTAAAg                       >  1:1745501/1‑35 (MQ=255)
           tCAATAAGTTGGAGTCATTACCACGGCTTTTAAAg                       >  1:10639315/1‑35 (MQ=255)
           tCAATAAGTTGGAGTCATTACCACGGCTTTTAAAg                       <  1:6894738/35‑1 (MQ=255)
            cAATAAGTTGGAGTCATTACCACGGCTTTTAAAgg                      >  1:10676700/1‑35 (MQ=255)
             aaTAAGTTGGAGTCATTACCACGGCTTTTAAAggg                     >  1:1497283/1‑34 (MQ=255)
             aaTAAGTTGGAGTCATTACCACGGCTTTTAAAGGc                     >  1:9325561/1‑35 (MQ=255)
             aaTAAGTTGGAGTCATTACCACGGCTTTTAAAGGc                     <  1:11968486/35‑1 (MQ=255)
             aaTAAGTTGGAGTCATTACCACGGCTTTTAAAGGc                     >  1:7604030/1‑35 (MQ=255)
              aTAAGTTGGAGTCATTACCACGGCTTTTAAAGGCt                    >  1:11496974/1‑35 (MQ=255)
              aTAAGTTGGAGTCATTACCACGGCTTTTAAAGGCt                    >  1:18790793/1‑35 (MQ=255)
              aTAAGTTGGAGTCATTAACACGGCTTTTAAAGGCt                    <  1:19706530/35‑1 (MQ=255)
               tAAGTTGGAGTCATTACCACGTCTTTTAAAGGCtt                   >  1:13873119/1‑35 (MQ=255)
               tAAGTTGGAGTCATTACCACGGCTTTTAAAGGCtt                   >  1:58292/1‑35 (MQ=255)
                aaGTTGGAGTCATTACCACGGCTTTTAAAGGCTTa                  >  1:20323136/1‑35 (MQ=255)
                aaGTTGGAGTCATTACCACGGCTTTTAAAGGCTTa                  <  1:5099959/35‑1 (MQ=255)
                aaGTTGGAGTCATTACCACGGCTTTTAAAGGCTTa                  >  1:6612441/1‑35 (MQ=255)
                aaGTTGGAGTCATTACCACGGCTTTTAAAGGCTTa                  >  1:3175497/1‑35 (MQ=255)
                 aGTTGGAGTCATTACCACGGCTTTTAAAGGCTTaa                 >  1:7681102/1‑35 (MQ=255)
                 aGTTGGAGTCATTACCACGGCTTTTAAAGGCTTaa                 >  1:14194047/1‑35 (MQ=255)
                 aGTTGGAGTCATTACCACGGCTTTTAAAGGCTTaa                 >  1:19203374/1‑35 (MQ=255)
                 aGTTGGAGTCATTACCACGGCTTTTAAAGGCTTaa                 >  1:8841943/1‑35 (MQ=255)
                 aGTTGGAGTCATTACCACGGCTTTTAAAGGCTTaa                 <  1:8006971/35‑1 (MQ=255)
                 aGTTGGAGTCATTACAACGGCTTTTAAAGGCTTaa                 <  1:9191287/35‑1 (MQ=255)
                  gTTGGAGTCATTACCACGGCTTTTTAATGCTTTAc                >  1:16255394/1‑35 (MQ=21)
                  gTTGGAGTCATTACCACGGCTTTTAAAGGCTTAAc                <  1:18496702/35‑1 (MQ=255)
                  gTTGGAGTCATTACCACGGCTTTTAAAGGCTTAAc                >  1:12789100/1‑35 (MQ=255)
                  gTTGGAGTCATTACCACGGCTTTTAAAGGCTTAAc                <  1:8710184/35‑1 (MQ=255)
                  gTTGGAGTCATTACCACGGCTTTTAAAGGCTTAAc                <  1:15945992/35‑1 (MQ=255)
                  gTTGGAGTCATTACCACGGCTTTTAAAGGCTTAAc                <  1:16457675/35‑1 (MQ=255)
                  gTTGGAGTCATTACCACGGCTTTTAAAAGCTTAAc                >  1:9075805/1‑35 (MQ=255)
                   ttGGAGTCATTACCACGGCTTTTAAAGGCTTTAcc               >  1:10348616/1‑35 (MQ=255)
                   ttGGAGTCATTACCACGGCTTTTAAAGGCTTAAcc               >  1:18032677/1‑35 (MQ=255)
                   ttGGAGTCATTACCACGGCTTTTAAAGGCTTAAcc               <  1:3785734/35‑1 (MQ=255)
                   ttGGAGTCATTACCACGGCTTTTAAAGGCTTAAcc               >  1:5744211/1‑35 (MQ=255)
                   ttGGAGTCATTACCACGGCTTTTAAAGGCTTAAcc               <  1:18780650/35‑1 (MQ=255)
                    tGGAGTCATTACCACGGCTTTTAAAGGCTTAAccc              >  1:18065475/1‑35 (MQ=255)
                    tGGAGTCATTACCACGGCTTTTAAAGGCTTAAccc              >  1:7232584/1‑35 (MQ=255)
                    tGGAGTCATTACCACGGCTTTTAAAGGCTTAAccc              >  1:17343131/1‑35 (MQ=255)
                    tGGAGTCATTACCACGGCTTTTAAAGGCTTAAccc              >  1:17131195/1‑35 (MQ=255)
                    tGGAGTCATTACCACGGATTTTAAAGGCTTAAccc              <  1:10758756/35‑1 (MQ=255)
                    gggAGTCATTACCACGGCTTTTAAAGGCTTAAccc              <  1:6259272/34‑1 (MQ=255)
                     ggAGTCATTACCACGGCTTTTAAAGGCTTAAcccc             <  1:1326142/35‑1 (MQ=255)
                     ggAGTCATTACCACGGCTTTTAAAGGCTTAAcccc             <  1:13010832/35‑1 (MQ=255)
                      gAGTCATTACCACGGCTTTTAAAGGGTTAACCCCt            >  1:16929555/1‑35 (MQ=255)
                      gAGTCATTACCACGGCTTTTAAAGGCTTAACCCCt            >  1:18023590/1‑35 (MQ=255)
                      gAGTCATTACCACGGCTTTTAAAGGCTTAACCCCt            <  1:3360278/35‑1 (MQ=255)
                       aGTCATTACCACGGCTTTTAAAGGCTTAACCCCtt           >  1:9550413/1‑35 (MQ=255)
                       aGTCATTACCACGGCTTTTAAAGGCTTAACCCCtt           <  1:12200295/35‑1 (MQ=255)
                       aGTCATTACCACGGCTTTTAAAGGCTTAACCCCtt           <  1:13102816/35‑1 (MQ=255)
                        gTCATTACCACGGCTTTTAAAGGCTTAACCCCTTa          >  1:12325495/1‑35 (MQ=255)
                        gTCATTACCACGGCTTTTAAAGGCTTAACCCCTTa          >  1:13566131/1‑35 (MQ=255)
                        gTCATTACCACGGCTTTTAAAGGCTTAACCCCTTa          >  1:17047697/1‑35 (MQ=255)
                         tCATTACCACGGCTTTTAAAGGCTTAACCCCTTAt         <  1:8104127/35‑1 (MQ=255)
                          cATTACCACGGCTTTTAAAGGCTTAACCCCTTATc        <  1:9673133/35‑1 (MQ=255)
                           aTTACCACGGCTTTTAAAGGCTTCACCCCTTATCt       <  1:4164953/35‑1 (MQ=255)
                           aTTACCACGGCTTTTAAAGGCTTAACCCCTTATCt       >  1:1978985/1‑35 (MQ=255)
                           aTTACCACGGCTTTTAAAGGCTTAACCCCTTATCt       >  1:17646833/1‑35 (MQ=255)
                           aTTACCACGGCTTTTAAAGGCTTAACCCCTTATCt       <  1:12054187/35‑1 (MQ=255)
                           aTTACCACGGCTTTTAAAGGCTTAACCCCTTATCt       <  1:8265451/35‑1 (MQ=255)
                           aTTACCACGGCTTTTAAAGGCTTAACCCCTTATCt       <  1:14846159/35‑1 (MQ=255)
                            ttgccACGGCTTTTAAAGGCTTAACCCCTTATCTg      <  1:14175818/32‑1 (MQ=255)
                            ttACCACGGCTTTTAAAGGCTTAACCCCTTATCTg      <  1:11323063/35‑1 (MQ=255)
                            ttACCACGGCTTTTAAAGGCTTAACCCCTTATCTg      <  1:4394963/35‑1 (MQ=255)
                            ttACCACGGCTTTTAAAGGCTTAACCCCTTATCTg      >  1:10193148/1‑35 (MQ=255)
                            ttACCACGGCTTTTAAAGGCTTAACCCCTTATCTg      <  1:18981842/35‑1 (MQ=255)
                            ttACCACGGCTTTTAAAGGCTTAACCCCTTATCTg      <  1:10982390/35‑1 (MQ=255)
                            ttACCACGGCTTTTAAAGGCTTAACCCCTTATCTg      <  1:1245646/35‑1 (MQ=255)
                            ttACCACCGCTTTTAAAGGCTTAACCCCTTATCTg      >  1:7026698/1‑35 (MQ=255)
                             tACCACGGCTTTTAAAGGCTTAACCCCTTATCTGc     >  1:20465808/1‑35 (MQ=255)
                              aCCACGGCTTTTAAAGGCTTAACCCCTTATCTGcc    <  1:10042079/35‑1 (MQ=255)
                              aCCACGGCTTTTAAAGGCTTAACCCCTTATCAGcc    <  1:15869256/35‑1 (MQ=255)
                              aCCACGGCTTTTAAAAGCTTAACCCCTTATCTGcc    >  1:11343562/1‑35 (MQ=255)
                               ccACGGCTTTTAAAGGCTTAACCCCTTATCTGccc   <  1:5085104/35‑1 (MQ=255)
                                cACGGCTTTTAAAGGCTTAACCCCTTATCTGccca  <  1:9217241/35‑1 (MQ=255)
                                cACGGCTTTTAAAGGCTTAACCCCTTATCTGccca  <  1:8392415/35‑1 (MQ=255)
                                cACGGCTTTTAAAGGCTTAACCCCTTATCTGccca  <  1:19948273/35‑1 (MQ=255)
                                |                                  
ATAAAACACTATCAATAAGTTGGAGTCATTACCACGGCTTTTAAAGGCTTAACCCCTTATCTGCCCA  >  REL606/4551414‑4551480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.