New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1398219108 (1.050)6 (0.090) 3/32 NT 8.5% coding (725/1527 nt) abgT predicted cryptic aminobenzoyl‑glutamate transporter
?REL606 = 1743481 58 (0.850)coding (2472/3057 nt) ydiJ predicted FAD‑linked oxidoreductase

Only 100 of 245 total aligned reads displayed.

TGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTAT  >  REL606/1398185‑1398253
                                  |                                  
tGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATT                                    >  1:20597456‑M1/1‑35 (MQ=255)
tGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATT                                    >  1:2177645‑M1/1‑35 (MQ=255)
 gTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTg                                   >  1:18300485/1‑35 (MQ=255)
 gTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTg                                   >  1:12474332/1‑35 (MQ=255)
 gTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTg                                   >  1:5336691/1‑35 (MQ=255)
  tCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGa                                  >  1:18149038/1‑35 (MQ=255)
  tCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGa                                  >  1:10831110/1‑35 (MQ=255)
  tCTGAAGTTTCTCATCGCTGTTTCCCTGCCATTGa                                  <  1:7953389/35‑1 (MQ=255)
   cTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGAc                                 >  1:20282464/1‑35 (MQ=255)
    tGCAGTTTCTCATCGCTGTTTCCCTGCCATTGAcc                                >  1:13717751/1‑35 (MQ=255)
    tGCAGTTTCTCATCGCTGTTTCCATGCCATTGAcc                                <  1:17841563/35‑1 (MQ=255)
     gCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCt                               >  1:6027659/1‑35 (MQ=255)
     gCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCt                               <  1:6123189/35‑1 (MQ=255)
      cAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTa                              <  1:14991114/35‑1 (MQ=255)
      cAGTTTCTCATCGCTGTTTCCATGCCATTGGCCTa                              <  1:1918863/35‑1 (MQ=37)
       attttCTCATCGCTGTTTCCCTGCCATTGACCTaa                             <  1:19717036/33‑1 (MQ=255)
       aGTTTCTCATCGCTGTTTCCCTGCCATTGACCTaa                             >  1:5645331/1‑35 (MQ=255)
        gTTTCCCATCGCTGTTTCCCTGCCATTGACCTAAc                            <  1:18582230/35‑1 (MQ=255)
         tttCTCATCGCTGTTTCCCTGCCATTGACCTAAcc                           >  1:17747337/1‑35 (MQ=255)
         tttCTCATCGCTGTTTCCCTGCCATTGACCTAAcc                           >  1:17529003/1‑35 (MQ=255)
         tttCTCATCGCTGTTTCCCTGCCATTGACCTAAcc                           >  1:1050983/1‑35 (MQ=255)
          ttCTCATCGCTGTTTCCCTGCCATTGACCTAACCg                          >  1:12650925/1‑35 (MQ=255)
          ttCTCATCGCTGTTTCCCTGCCATTGACCTAACCg                          <  1:20484878/35‑1 (MQ=255)
          ttCTCATCGCTGTTTCCCTGCCATTGACCTAACCg                          <  1:6904279/35‑1 (MQ=255)
            ctcATCGCTTTTTCCCTGCCATTGACCTAACCGTg                        <  1:10032828/35‑1 (MQ=255)
            ctcATCGCTGTTTCCCTGCCATTGACCTAACCGTg                        <  1:94548/35‑1 (MQ=255)
            ctcATCGCTGTTTCCCTGCCATTGACCTAACCGTg                        >  1:5569345/1‑35 (MQ=255)
            ctcATCGCTGTTTCCCTGCCATTGACCTAACCGTg                        >  1:714575/1‑35 (MQ=255)
            ctcATCGCTATTTCCCTGCCATTGACCTAACCGTg                        <  1:3927329/35‑1 (MQ=255)
             tcATCGCTGTTTCCCTGCCATTGACCTAACCGTgg                       >  1:2304854/1‑35 (MQ=255)
              naTCGCTGTTTCCCTGCCATTGACCTAACCGTGNc                      >  1:17238023/2‑35 (MQ=255)
              cATCGCTGTTTCCCTGCCATTGACCTAACCGTGGc                      >  1:20017518/1‑35 (MQ=255)
               aTCTCTGTTTCCCTGCCATTGACCTAACCGTGGCt                     >  1:13361330/1‑35 (MQ=255)
               aTCGCTGTTTCCCTGCCATTGACCTAACCGTGGCt                     >  1:4785370/1‑35 (MQ=255)
                tCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTc                    >  1:13763797/1‑35 (MQ=255)
                 cGCTTTTCCCCTGCCATTGACCTAACCGTGGCTCg                   <  1:15207117/35‑1 (MQ=37)
                 cGCTTTTCCCCTGCCATTGACCTAACCGTGGCTCg                   <  1:3292300/35‑1 (MQ=37)
                  gCTTTTTCCCTGCCATTGACCTAACCGTGGCTCga                  <  1:18959222/35‑1 (MQ=255)
                  gCTGTTTCCCTGCCATTGACCTAACCGTGGCTccc                  >  1:19498206/1‑33 (MQ=255)
                  gCTGTTTCCCTGCCATTGACCTAACCGTGGCTCgc                  >  1:2413856/1‑34 (MQ=255)
                  cctGTGTCCCTGCCATTttcaccaaatggcaaagc                  <  1:2549285‑M1/34‑19 (MQ=255)
                   cTGTTCCCCTGCCATTGACCTAACCGTGGCTCgat                 <  1:15350788/35‑1 (MQ=255)
                    tGTTTCCCTGCCATTttcaccaaatggcaaagccc                <  1:5741663‑M1/35‑21 (MQ=255)
                    tGTTTCCCTGCCATTGACCTAACCGTGGCTCgatg                <  1:20211668/35‑1 (MQ=255)
                    tGTGTCCCTGCCATTttcaccaaatggcaaagccc                <  1:19954229‑M1/35‑21 (MQ=255)
                     ttctcccTGCCATTttcaccaaatggcaaagccca               <  1:20361927‑M1/32‑22 (MQ=255)
                     gTTTCCCTGCCATTttcaccaaatggcaaagccca               <  1:4836768‑M1/35‑22 (MQ=255)
                     gTTTCCCTGCCATTGACCTAACCGTGGCTCgctga               >  1:14585661/1‑35 (MQ=255)
                      tttCCCTGCCATTGACCTAACCGTGGCTCcctgat              >  1:11358380/1‑35 (MQ=37)
                      ttccccTGCCATTGACCTAACCGTGGCTCgatgat              <  1:11800090/32‑1 (MQ=255)
                       ttCCCTGCCATTGACCTAACCGTGGCTCTATGAtt             >  1:15916045/1‑35 (MQ=255)
                       ttCCCTGCCATTGACCTAACCGTGGCTCGATGAtt             >  1:9747408/1‑35 (MQ=255)
                        ccccTGCCATTGACCTAACCGTGGCTCGATGAttt            <  1:18776154/34‑1 (MQ=255)
                         cccTGCCATTttcaccaaatggcaaagcccagcat           <  1:17097199‑M1/35‑26 (MQ=255)
                         cccTGCCATTttcaccaaatggcaaagcccagcat           <  1:19921442‑M1/35‑26 (MQ=255)
                         cccTGCCATTttcaccaaatggcaaagcccagcat           <  1:14657683‑M1/35‑26 (MQ=255)
                         cccTGCCATTGACCTAACCGTGGCTCGATGAtttt           <  1:12426040/35‑1 (MQ=255)
                         cccTGCCATTGACCTAACCGTGGCTCGATGAtttt           >  1:3781356/1‑35 (MQ=255)
                          ccTGCCATTttcaccaaatggcaaagcccagcata          <  1:16076028‑M1/35‑27 (MQ=255)
                          ccTGCCATTttcaccaaatggcaaagcccagcata          <  1:7559619‑M1/35‑27 (MQ=255)
                          ccTGCCATTttcaccaaatggcaaagcccagcata          <  1:1309857‑M1/35‑27 (MQ=255)
                          ccTGCCATTttaaccaaatggcaaagcccagcata          <  1:4713196‑M1/35‑27 (MQ=255)
                           cTGCCATTttcaccaaatggcaaagcccagcatat         >  1:9362822‑M1/1‑8 (MQ=255)
                           cTGCCATTttcaccaaatggcaaagcccagcatat         <  1:1174732‑M1/35‑28 (MQ=255)
                           cTGCCATTttcaccaaatggcaaagcccagcatat         <  1:5298693‑M1/35‑28 (MQ=255)
                           cTGCCATTttcaccaaatggcaaagcccagcatat         <  1:9034457‑M1/35‑28 (MQ=255)
                           cTGCCATTttcaccaaatggcaaagcccagcatat         >  1:7365372‑M1/1‑8 (MQ=255)
                           cTGCCATTttcaccaaatggcaaagcccagcatat         <  1:8175434‑M1/35‑28 (MQ=255)
                           cTGCCATTttcaccaaatggcaaagcccagcatat         <  1:858670‑M1/35‑28 (MQ=255)
                           cTGCCATTGACCTAACCGTGGCTCGATGATTTTGt         >  1:17069193/1‑35 (MQ=255)
                           cTGCCATTGACCTAACCGTGGCTCGATGATTTTGt         >  1:14245421/1‑35 (MQ=255)
                           cTGCCATTAACCTAACCGTGGCTCGATGAttttag         >  1:8558531/1‑33 (MQ=38)
                            tGCCATTGACCTAACCGTGGCTCGATGATTTTTTc        >  1:1359577/1‑35 (MQ=255)
                            tGCCATTGACCTAACCGTGGCTCGATGATTTTGTc        <  1:4931453/35‑1 (MQ=255)
                            tGCCATTGACCTAACCGTGGCTCGATGATTTTGTc        <  1:6241992/35‑1 (MQ=255)
                             gCCATTGACCTAACCGTGGCTCGATGATTTTGTCg       <  1:20153036/35‑1 (MQ=255)
                             gCCATTGACCTAACCGTGGCTCGATGATTTTGTCg       <  1:3484901/35‑1 (MQ=255)
                              ccATTttcaccaaatggcaaagcccagcatatcaa      <  1:7065525‑M1/35‑31 (MQ=255)
                              ccATTttcaccaaatggcaaagcccagcatatcaa      <  1:4093239‑M1/35‑31 (MQ=255)
                              ccATTttcaccaaatggcaaagcccagcatatcaa      <  1:6532684‑M1/35‑31 (MQ=255)
                              ccATTttcaccaaatggcaaagcccagcatatcaa      >  1:6459844‑M1/1‑5 (MQ=255)
                              ccATTGACCTAACCGTGGCTCGATGATTTTGTCgg      <  1:15721050/35‑1 (MQ=255)
                              ccATTGACCTAACCGTGGCTCGATGATTTTGTCgg      <  1:15896023/35‑1 (MQ=255)
                              ccATTGACCTAACCGTGGCTCGATGATTTTGTCgg      <  1:2866437/35‑1 (MQ=255)
                               cATTttcaccaaatggcaaagcccagcatatcaaa     >  1:5321620‑M1/1‑4 (MQ=255)
                               cATTttcaccaaatggcaaagcccagcatatcaaa     >  1:16741303‑M1/1‑4 (MQ=255)
                               cATTGACCTAACCGTGGCTCGATGATTTTGTCggg     >  1:10963377/1‑34 (MQ=255)
                               cATTGACCTAACCGTGGCTCGATGATTTTGTCggg     >  1:5013250/1‑34 (MQ=255)
                               cATTGACCTAACCGTGGCTCGATGATTTTGTCggg     >  1:4491557/1‑34 (MQ=255)
                               cATTGACCTAACCGTGGCTCGATGATTTTGTCGGt     <  1:451263/35‑1 (MQ=255)
                                aTTGACCTAACCGTGGCTCGATGATTTTGTCGGtt    <  1:5229102/35‑1 (MQ=255)
                                aTTGACCTAACCGTGGCTCGATGATTTTGTCGGtt    <  1:10288525/35‑1 (MQ=255)
                                 ttttcaccaaatggcaaagcccagcatatcaaagg   <  1:355730‑M1/35‑34 (MQ=255)
                                 ttGACCTAACCGTGGCTCGATGATTTTGTCGGTTa   <  1:4180431/35‑1 (MQ=255)
                                  tttcaccaaatggcaaagcccagcatatcaaaggc  <  1:3059685‑M1/35‑35 (MQ=255)
                                  tttcaccaaatggcaaagcccagcatatcaaaggc  >  1:8230511‑M1/1‑1 (MQ=255)
                                  tttcaccaaatggcaaagcccagcatatcaaaggc  >  1:1205558‑M1/1‑1 (MQ=255)
                                  tttcaccaaatggcaaagcccagcatatcaaaggc  >  1:16356404‑M1/1‑1 (MQ=255)
                                  tGACCTAACCGTGGCTCGATGATTTTGTCGGTTAt  <  1:18079803/35‑1 (MQ=255)
                                  tGACCTAACCGTGGCTCGATGATTTTGTCGGTTAt  <  1:11051372/35‑1 (MQ=255)
                                  |                                  
TGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTAT  >  REL606/1398185‑1398253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.