New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1922884 =47 (0.460)13 (0.150) 5/40 NT 20.9% intergenic (+109/+232) znuB/ruvB high‑affinity zinc transporter membrane component/Holliday junction DNA helicase B
?REL606 = 3625456 59 (0.690)pseudogene (7/738 nt) yhjQ b3534; cell division protein (chromosome partitioning ATPase)

CTGATAAGACGCGAACAGCGTCGCATCAGGCACACTGCCAATGTCGGATGCGGTGCGAGCGCCTTATCT  >  REL606/1922850‑1922918
                                  |                                  
cTGATAAGACGCGAACAGCGTCGCATCAGGCacac                                    >  1:17752867/1‑35 (MQ=255)
cTGATAAGACGCGAACAGCGTCGCATCAGGCacac                                    >  1:13396621/1‑35 (MQ=255)
cTGATAAGACGCGAACAGCGTCGCATCAGGCacac                                    <  1:12603517/35‑1 (MQ=255)
cTGATAAGACGCGAACAGCGTCGCATCAGGCacac                                    <  1:13189095/35‑1 (MQ=255)
 tGATAAGACGCGAACAGCGTCGCATCAGGCACACt                                   <  1:18071432/35‑1 (MQ=40)
 tGATAAGACGCGAACAGCGTCGCATCAGGCACACt                                   <  1:2206123/35‑1 (MQ=40)
 tGATAAGACGCGAACAGCGTCGCATCAGGCACACt                                   <  1:16537458/35‑1 (MQ=40)
  gATAAGACGCGAACAGCGTCGCATCAGGCACACTg                                  >  1:10822164/1‑35 (MQ=38)
  gATAAGACGCGAACAGCGTCGCATCAGGCACACTg                                  >  1:6699681/1‑35 (MQ=38)
  gATAAGACGCGAACAGCGTCGCATCAGGCACACTg                                  >  1:12854999/1‑35 (MQ=38)
   aTAAGACGCGAACAGCGTCGCATCAGGCACACTGc                                 <  1:9371625/35‑1 (MQ=38)
   aTAAGACGCGAACAGCGTCGCATCAGGCACACTGc                                 >  1:4728628/1‑35 (MQ=38)
    tAAGACGCGAACAGCGTCGCATCATGCACACTGcc                                >  1:3724948/1‑35 (MQ=255)
    tAAGACGCGAACAGCGTCGCATCAGGCACACTGcc                                >  1:6793914/1‑35 (MQ=38)
    tAAGACGCGAACAGCGTCGCATCAGGCACACTGcc                                >  1:2435152/1‑35 (MQ=38)
    tAAGACGCGAACAGCGTCGCATCAGGCACACTGcc                                >  1:8963779/1‑35 (MQ=38)
    tAAGACGCGAACAGCGTCGCATCAGGCACACTGcc                                >  1:10049016/1‑35 (MQ=38)
     aaGACGCGAACAGCGTCGCATCAGGCACACTGCCa                               >  1:15205939/1‑35 (MQ=38)
     aaGACGCGAACAGCGTCGCATCAGGCACACTGCCa                               >  1:7218066/1‑35 (MQ=38)
      aGACGCGAACAGCGTCGCATCAGGCACACTGCCaa                              >  1:6418679/1‑35 (MQ=38)
       gACGCGAACAGCGTCGCATCAGGCACACTGCCAAt                             >  1:20343656/1‑35 (MQ=38)
       gACGCGAACAGCGTCGCATCAGGCACACTGCCAAt                             >  1:9019772/1‑35 (MQ=38)
       gACGCGAACAGCGTCGCATCAGGCACACTGCCAAt                             >  1:12549939/1‑35 (MQ=38)
        aCGCGAACAGCGTCGCATCAGGCACACTGCCAATg                            >  1:18657437/1‑35 (MQ=40)
        aCGCGAACAGCGTCGCATCAGGCACACTGCCAATg                            >  1:9308482/1‑35 (MQ=40)
        aCGCGAACAGCGTCGCATCAGGCACACTGCCAATg                            >  1:4764416/1‑35 (MQ=40)
         cgcgAACAGCGTCGCATCAGGCACACTGCCCATGt                           >  1:473837/1‑35 (MQ=255)
         cgcgAACAGCGTCGCATCAGGCACACTGCCAATgg                           >  1:3587483/1‑34 (MQ=255)
         cgcgAACAGCGTCGCATCAGGCACACTGCCAATGt                           >  1:17192552/1‑35 (MQ=255)
         cgcgAACAGCGTCGCATCAGGCACACTGCCAATGt                           >  1:12421727/1‑35 (MQ=255)
         cgcgAACAGCGTCGCATCAGGCACACTGCCAATGt                           >  1:13094577/1‑35 (MQ=255)
         cgcgAACAGCGTCGCATCAGGCACACTGCCAATGt                           >  1:6554894/1‑35 (MQ=255)
          gcgAACAGCGTCGCATCAGGCACACTGCCAATGTc                          >  1:3877334/1‑35 (MQ=255)
          gcgAACAGCGTCGCATCAGGCACACTGCCAATGTc                          >  1:17861030/1‑35 (MQ=255)
           cgAACAGCGTCGCATCAGGCACACTGCCAATGTCg                         >  1:13417079/1‑35 (MQ=255)
             aaCAGCGTCGCATCAGGCACACTGCCAATGTCggg                       >  1:7289825/1‑34 (MQ=255)
             aaCAGCGTCGCATCAGGCACACTGCCAATGTCGGa                       >  1:15217992/1‑35 (MQ=255)
             aaCAGCGTCGCATCAGGCACACTGCCAATGTCGGa                       >  1:17464187/1‑35 (MQ=255)
             aaCAGCGTCGCATCAGGCACACTGCCAATGTCGGa                       >  1:10225247/1‑35 (MQ=255)
              aCAGCGTCGCATCAGGCACACTGCCAATGTCgggt                      >  1:870295/1‑33 (MQ=255)
              aCAGCGTCGCATCAGGCACACTGCCAATGTCgggt                      >  1:13897444/1‑33 (MQ=255)
               cAGCGTCGCATCATGCACACTGCCAATGTCGGagg                     >  1:200988/1‑33 (MQ=14)
               cAGCGTCGCATCAGGCACACTGCCAATGTCGGATg                     >  1:2161872/1‑35 (MQ=40)
               cAGCGTCGCATCAGGCACACTGCCAATGTCGGATg                     >  1:18972573/1‑35 (MQ=40)
                aGCGTCGCATCAGGCACACTGCCAATGTCGGGTgg                    >  1:11320208/1‑34 (MQ=255)
                aGCGTCGCATCAGGCACACTGCCAATGTCGGATGc                    >  1:12713790/1‑35 (MQ=38)
                aGCGTCGCATCAGGCACACTGCCAATGTCGGATGc                    >  1:12317/1‑35 (MQ=38)
                  cGTCGCATCAGGCACACTGCCAATGTCGGATGCgg                  >  1:17344115/1‑35 (MQ=38)
                   gTCGCATCATGCACACTGCCAATGTCGGATGGggg                 >  1:4107960/1‑34 (MQ=14)
                   gTCGCATCAGGCACACTGCCAATGTCGGGTGGggg                 >  1:788642/1‑34 (MQ=14)
                   gTCGCATCAGGCACACTGCCAATGTCGGATGGggg                 >  1:12583123/1‑34 (MQ=255)
                   gTCGCATCAGGCACACTGCCAATGTCGGATGCggg                 >  1:7765852/1‑34 (MQ=38)
                   gTCGCATCAGGCACACTGCCAATGTCGGATGCggg                 >  1:1654824/1‑34 (MQ=38)
                    cccccccgccccccCTGCCAATGTCGGATGCGGTg                >  1:15082620‑M1/15‑35 (MQ=255)
                     cGCATCAGGCACACTGCCAATGTCGGGTGCGGTGc               >  1:19477659/1‑35 (MQ=255)
                     cGCATCAGGCACACTGCCAATGTCGGATGGCGTGc               >  1:17489228/1‑35 (MQ=14)
                     cGCATCAGGCACACTGCCAATGTCGGATGCGGGGc               >  1:6103376/1‑35 (MQ=255)
                     cGCATCAGGCACACTACCAATGTCGGGTGCggggg               >  1:7835308/1‑32 (MQ=14)
                      gCATCAGGCACACTGCCAATGTCGGATGGGGGGCg              >  1:17643239/1‑35 (MQ=14)
                      gCATCAGGCACACTGCCAATGTCGGATGCGGGGCg              >  1:13227297/1‑35 (MQ=255)
                      cccccaccccccCTGCCAATGTCGGATGCGGTGCg              >  1:9233500‑M1/13‑35 (MQ=255)
                       ccccgccccccCTGCCAATTTCGGATGCGGTGCGa             >  1:9425154‑M1/12‑35 (MQ=255)
                       cccccccccccCTGCCAATGTCGGATGCGGTGCGa             >  1:9065337‑M1/12‑35 (MQ=255)
                       cATCAGGCACACTGCCAATGTCGGATGGGGGGCgg             >  1:14854686/1‑34 (MQ=14)
                        cccgccccccCTGCCAATGTCGGATGCGGTGCGAg            >  1:17216264‑M1/11‑35 (MQ=255)
                        aTCAGGTACACTGCCAATGTCGGATGCGGTGCggg            >  1:7283089/1‑33 (MQ=11)
                         ccgccccccCTGCCAATTTCGGATGCGGTGCGAgc           >  1:18603571‑M1/10‑35 (MQ=255)
                         ccgccccccCTGCCAATGTCGGATGCGGTGCGAgc           >  1:4660374‑M1/10‑35 (MQ=255)
                         ccgccccccCTGCCAATGTCGGATGCGGTGCGAgc           >  1:4661286‑M1/10‑35 (MQ=255)
                         cccccccccCTGCCAATGTCGGATGCGGTGCGAgc           >  1:14016257‑M1/10‑35 (MQ=255)
                          cgccccccCTGCCAATGTCGGATGCGGTGCGAgcg          >  1:8504143‑M1/9‑35 (MQ=255)
                          cgccccccCTGCCAATGTCGGATGAGGTGCGAgcg          >  1:7155740‑M1/9‑35 (MQ=255)
                          ccccccccCTGCCAATGTCGGATGCGGTGCGAgcg          >  1:5798921‑M1/9‑35 (MQ=255)
                          cAGGCACACTGCCAATGTCGGATGGGGGGGGAgcg          >  1:15231770/1‑35 (MQ=14)
                          aaccccccCTGCCAATGTCGGATGCGGTGCGAgcg          >  1:19197238‑M1/9‑35 (MQ=255)
                           aGGCACACTGCCAATGTCGGATTCGGTGCGAgcgc         >  1:11850280/1‑35 (MQ=255)
                           aGGCACACTGCCAATGTCGGATGCGGGGCGAgcgc         >  1:17212583/1‑35 (MQ=255)
                             cccccCTGCCAATGTCGGATGCGGTGCGAGCGCCt       >  1:5353572‑M1/6‑35 (MQ=255)
                              ccccCTGCCAATGTCGGATGCGGTGCGAGCGCCtt      >  1:14884796‑M1/5‑35 (MQ=255)
                              ccccCTGCCAATGTCGGATGCGGTGCGAGCGCCtt      >  1:19553644‑M1/5‑35 (MQ=255)
                              ccccCTGCCAATGTCGGATGCGGTGCGAGCGCCtt      >  1:20078317‑M1/5‑35 (MQ=255)
                              cacaCTCCCAATGTCGGATGCGGGGCGAGCGccct      >  1:15661438/1‑33 (MQ=14)
                               cccCTGCCAATGTCGGATGCGGTGCGAGCGCCTTa     >  1:11311602‑M1/4‑35 (MQ=255)
                               cccCTGCCAATGTCGGATGCGGTGCGAGCGCCTTa     >  1:18304673‑M1/4‑35 (MQ=255)
                                ccCTGCCAATGTCGGATGCGGTGCGAGCGCCTTAt    >  1:5950794‑M1/3‑35 (MQ=255)
                                ccCTGCCAATGTCGGATGCGGTGCGAGCGCCTTAt    >  1:7474017‑M1/3‑35 (MQ=255)
                                 cCTGCCAATGTCGGATGCGGTGCGAGCGCCTTATc   >  1:9149969‑M1/2‑35 (MQ=255)
                                 cCTGCCAATGTCGGATGCGGTGCGAGCGCCTTATc   >  1:3902908‑M1/2‑35 (MQ=255)
                                 cCTGCCAATGTCGGATGCGGTGCGAGCGCCTTATc   >  1:14173342‑M1/2‑35 (MQ=255)
                                  CTGCCAATGTCGGATGCGGTGCGAGCGCCTTATCt  >  1:17240123‑M1/1‑35 (MQ=255)
                                  CTGCCAATGTCGGATGCGGTGCGAGCGCCTTATCt  >  1:18456838‑M1/1‑35 (MQ=255)
                                  |                                  
CTGATAAGACGCGAACAGCGTCGCATCAGGCACACTGCCAATGTCGGATGCGGTGCGAGCGCCTTATCT  >  REL606/1922850‑1922918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.