New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 304063893 (0.910)11 (0.140) 3/38 NT 14.8% coding (649/810 nt) pppA bifunctional prepilin leader peptidase/ methylase
?REL606 4567447 = 53 (0.650)coding (1808/2151 nt) yjiY predicted inner membrane protein

AACGCCCCCACCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3040622‑3040638
‑‑‑‑‑‑‑‑‑‑‑‑cagccGGAACAACAGTTACCCAGATGTATTGGGTGCGCT  >  REL606/4567447‑4567480
                                                   
AACCCCCCCACCCAGCCGGAACAACAGTTACCCAG                  <  1:1094976/35‑1
   ccaCCCACCCAGCCGGAACAACAGTTACCCAGATG               <  1:10956590/32‑1
    caCCCACCCAGCCGGAACAACAGTTACCCAGATGT              <  1:17550392/33‑1
    caCCCACCCAGCCGGAACAACAGTTACCCAGATGT              <  1:5220360/33‑1
    CCCCCGCCCAGCCGGAACAACAGTTACCCAGATGT              <  1:5289687/35‑1
    CCCCCACCCAGCCGGAACAACAGTTACCCAGATGT              <  1:187896/35‑1
     gCCCATCCAGCCGGAACAACAGTTACCCAGATGTA             <  1:18790681/34‑1
     agCCACCCAGCCGGAACAACAGTTACCCAGATGTA             <  1:19533533/33‑1
     aCCCCCCCAGCCGGAACAACAGTTACCCAGATGTA             <  1:13013277/34‑1
      CCCCCCCAGCCGGAACAACAGTTACCCAGATGTAT            <  1:11014267/35‑1
      CCCACCCAGCCGGAACAACAGTTACCCAGATGTAT            <  1:15161398/35‑1
      CCCACCCAGCCGGAACAACAGTTACCCAGATGTAT            <  1:17217790/35‑1
       cccCCCAGCCGGAACAACAGTTACCCAGATGTATT           <  1:19816176/32‑1
       CCACCCAGCCGGAACAACAGTTACCCAGATGTATT           <  1:18266741/35‑1
        tgCCCAGCCGGAACAACAGTTACCCAGATGTATTG          <  1:9235084/33‑1
        ccCCCAGCCGGAACAACAGTTACCCAGATGTATTG          <  1:3284306/33‑1
         cCCCAGCCGGAACAACAGTTACCCAGATGTATTGG         <  1:3404639/34‑1
         cCCCAGCCGGAACAACAGTTACCCAGATGTATTGG         <  1:11037905/34‑1
         ACCCAGCCGGAACAACAGTTACCCAGATGTATTGG         <  1:12326781/35‑1
          CCCAGCCGGAACAACAGTTACCCAGATGTATTGGG        <  1:11440962/35‑1
          CCCAGCCGGAACAACAGTTACCCAGATGTATTGGG        <  1:17993111/35‑1
           CCAGCCGGAACAACAGTTACCCAGATGTATTGGGT       <  1:308512/35‑1
           CCAGCCGGAACAACAGTTACCCAGATGTATTGGGT       <  1:8729975/35‑1
           CCAGCCGGAACAACAGTTACCCAGATGTATTGGGT       <  1:9791203/35‑1
           CCAGCCGGAACAACAGTTACACAGATGTATTGGGT       <  1:17404484/35‑1
            CAGCCGGAACAACAGTTACCCAGATGTATTGGGTG      <  1:8503302/35‑1
            CAGCCGGAACAACAGTTACCCAGATGTATTGGGTG      <  1:7267117/35‑1
            CAGCCGGAACAACAGTTACACAGATGTATTGGGTG      <  1:11602959/35‑1
             AGCCGGAACAACAGTTACCCAGATGTATTGGGTGC     <  1:8811065/35‑1
             AGCCGGAACAACAGTTACCCAGATGTATTGGGTGC     <  1:18243325/35‑1
             AGCCGGAACAACAGTTACCCAGATGTATTGGGTGC     <  1:10861550/35‑1
             AGCCGGAACAACAGTTACCCAGATGTATTGGGTGC     <  1:11074648/35‑1
              GCCGGAACAACAGTTACCCAGATGTATTGGGTGCG    >  1:10207181/1‑35
              GCCGGAACAACAGTTACCCAGATGTATTGGGTGCG    <  1:9228813/35‑1
              GCCGGAACAACAGTTACCCAGATGTATTGGGTGCG    <  1:757920/35‑1
              GCCGGAACAACAGTTACCCAGATGTATTGGGTGCG    >  1:5760437/1‑35
              GCCGGAACAACAGTTACCCAGATGTATTGGGTGCG    <  1:14658271/35‑1
              GCCGGAACAACAGTTACCCAGATGTATTGGGTGCG    >  1:13317056/1‑35
               CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC   >  1:15884597/1‑35
               CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC   <  1:15829767/35‑1
               CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC   <  1:10869296/35‑1
               CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC   >  1:14299945/1‑35
               CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC   <  1:15765030/35‑1
               CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC   >  1:8721270/1‑35
               CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC   >  1:1554553/1‑35
               CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC   >  1:8571920/1‑35
                CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT  >  1:16681461/1‑35
                CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT  >  1:10389870/1‑35
                CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT  >  1:7274518/1‑35
                CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT  <  1:19330989/35‑1
                CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT  >  1:13772806/1‑35
                CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT  <  1:20237443/35‑1
                CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT  >  1:3350689/1‑35
                CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT  >  1:11953370/1‑35
                                                   
AACGCCCCCACCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3040622‑3040638
‑‑‑‑‑‑‑‑‑‑‑‑cagccGGAACAACAGTTACCCAGATGTATTGGGTGCGCT  >  REL606/4567447‑4567480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.