New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 506020 = | 104 (1.010) | 12 (0.120) | 4/48 | NT | 14.8% | intergenic (+28/‑62) | allR/gcl | DNA‑binding transcriptional repressor/glyoxylate carboligase |
? | REL606 | 758029 = | 34 (0.330) | coding (806/1266 nt) | tolA | cell envelope integrity inner membrane protein TolA |
GCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAG‑CCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCT > REL606/757995‑758063 | gcagcaGCTGATAAGAAAGCAGCGGCAGAAAAAg‑c < 1:7262637/35‑1 (MQ=255) gcagcaGCTGATAAGAAAGCAGCGGCAGAAAAAg‑c < 1:7104503/35‑1 (MQ=255) cgccagcTGATAAGAAAGCAGCGGCAGAAAAAg‑cc < 1:5127959/32‑1 (MQ=255) cagcagCTGATAAGAAAGCAGCGGCAGAAAAAg‑cc < 1:18769098/35‑1 (MQ=255) cagcagCTGATAAGAAAGCAGCGGCAGAAAAAg‑cc < 1:10871859/35‑1 (MQ=255) cagcagCTGATAAGAAAGCAGCGGCAGAAAAAg‑cc > 1:14471555/1‑35 (MQ=255) cagcagCTGATAAGAAAGCAGCGGCAGAAAAAg‑cc > 1:17650271/1‑35 (MQ=255) caccagcTGATAAGAAAGCAGCGGCAGAAAAAg‑cc < 1:9639879/32‑1 (MQ=255) caccagcTGATAAGAAAGCAGCGGCAGAAAAAg‑cc < 1:18544899/32‑1 (MQ=255) cgcagcTGATAAGAAAGCAGCGGCAGAAAAAg‑ccg < 1:8212164/34‑1 (MQ=255) gcagcTGATAAGAAAGCAGCGGCAGAAAAAg‑ccgc > 1:12865094/1‑35 (MQ=255) gcagcTGATAAGAAAGCAGCGGCAGAAAAAg‑ccgc > 1:16037291/1‑35 (MQ=255) gcagcTGATAAGAAAGCAGCGGCAGAAAAAa‑ccgc > 1:13672304/1‑35 (MQ=255) cagcTGATAAGAAAGCAGCGGCAGAAAAAg‑ccgcc > 1:18317186/1‑35 (MQ=255) agcTGATAAGAAAGCAGCTGCAGAAAAAG‑ccgccg > 1:15397827/1‑35 (MQ=255) gcTGATAAGAAAGCAGCGGCAGAAAAAG‑Ccgccgc > 1:1269156/1‑35 (MQ=255) gcTGATAAGAAAGCAGCGGCAGAAAAAG‑Ccgccgc > 1:13052478/1‑35 (MQ=255) gcTGATAAGAAAGCAGCGGCAGAAAAAG‑Ccgccgc > 1:14075410/1‑35 (MQ=255) cTGATAAGAAAGCAGCTGCAGAAAAAG‑CCGCCGCa > 1:11329777/1‑35 (MQ=255) cTGATAAGAAAGCAGCGGCAGAAAAAG‑CCGCCGCa > 1:5066735/1‑35 (MQ=255) cTGATAAGAAAGCAGCGGCAGAAAAAG‑CCGCCGCa > 1:16083414/1‑35 (MQ=255) tGATAAGAAAGCAGCGGCAGAAAAAG‑CCGCCGCAg > 1:8279643/1‑35 (MQ=255) tGATAAGAAAGCAGCGGCAGAAAAAG‑CCGCCGCAg > 1:3547001/1‑35 (MQ=255) ntAAGAAAGCAGCGGCAGAAAAAG‑CCGCCGCAGAc > 1:18870123/2‑35 (MQ=255) aTAAGAAAGCAGCGGCAGAAAAAG‑CCGCCGCAGAc > 1:10875435/1‑35 (MQ=255) aaGAAAGCAGCGGCAGAAAAAG‑CCGCCGCAGACaa > 1:7547790/1‑35 (MQ=255) aaGAAAGCAGCGGCAGAAAAAG‑CCGCCGCAGACaa > 1:12710452/1‑35 (MQ=255) aGAAAGCAGCGGCAGAAAAAG‑ACGCCGCAGACaaa < 1:7745301/35‑1 (MQ=255) gAAAGCAGCGGCAGAAAAAG‑CCGCCGCAGACaaaa > 1:17647039/1‑35 (MQ=255) gAAAGCAGCGGCAGAAAAAG‑CCGCCGCAGACaaaa > 1:13488759/1‑35 (MQ=255) aaaGCAGCGGCAGAAAAAG‑CCGCCGCAGACaaaaa > 1:7009911/1‑35 (MQ=255) aaGCAGCGGCAGAAAAAG‑CCGCCGCAGACaaaaaa > 1:3939258/1‑35 (MQ=255) gcGGCAGAAAAAG‑CCGCCGCAGACAAAAAagcggc > 1:5222571/1‑35 (MQ=255) gcGGCAGAAAAAG‑CCGCCGCAGACAAAAAagcggc > 1:11820506/1‑35 (MQ=255) cGGCAGAAAAAG‑CCGCCGCAGACAAAAAagcggca > 1:1410578/1‑35 (MQ=255) ggaaaaaaacccCCGCCGCAGACAAAAAagcggca < 1:5963280‑M2/23‑1 (MQ=255) ggaaaaaacccCCGCCGCAGACAAAAAagcggcag < 1:10548781‑M2/24‑1 (MQ=255) gaaaaaaacccCCGCCGCAGACAAAAAagcggcag < 1:8593529‑M2/24‑1 (MQ=255) gaaaaaaaaccCCGCCGCAGACAAAAAagcggcag < 1:1378270‑M2/24‑1 (MQ=255) gaaaaaaaaccCCGCCGCAGACAAAAAagcggcag < 1:1696975‑M2/24‑1 (MQ=255) cAGAAAAAG‑CCGCCGCAGACAAAAAagcggcaggg > 1:18588705/1‑33 (MQ=255) cAGAAAAAG‑CCGCCGCAGACAAAAAagcggcagcg > 1:6227572/1‑35 (MQ=255) cAGAAAAAG‑CCGCCGCAGACAAAAAagcggcagcg > 1:10454120/1‑35 (MQ=255) cAGAAAAAG‑CCGCCGCAGACAAAAAagcggcagcg > 1:13989204/1‑35 (MQ=255) cAGAAAAAG‑CCGCCGCAGACAAAAAagcggcagcg > 1:14078151/1‑35 (MQ=255) aaaaaaacccCCGCCGCAGACAAAAAagcggcagc < 1:9787701‑M2/25‑1 (MQ=255) aaaaaacccCCGCCGCAGACAAAAAagcggcagcg < 1:1359483‑M2/26‑1 (MQ=255) aaaaaacccCCGCCGCAGACAAAAAagcggcagcg < 1:13892608‑M2/26‑1 (MQ=255) aaaaaaaccCCGCCGCAGACAAAAAagcggcagcg < 1:10900420‑M2/26‑1 (MQ=255) aGAAAAAC‑CCCCAGCCGACAAAAAagcagcagaaa < 1:4605060/35‑4 (MQ=18) gAAAAAG‑CCGCCGCAGACAAAAAagcggcagcggc > 1:12680834/1‑35 (MQ=255) gAAAAAG‑CCGCCGCAGACAAAAAagcggcagcggc > 1:15999999/1‑35 (MQ=255) gAAAAAG‑CCGCCGCAGACAAAAAagcggcagcggc > 1:13617206/1‑35 (MQ=255) aaaacccCCGCCGCAGACAAAAAagcggcagcggc < 1:11503203‑M2/28‑1 (MQ=255) aaaaaccCCGCCGCAGACAAAAAagcggcagcggc < 1:13383065‑M2/28‑1 (MQ=255) aaaaaGCCCGCCGCAGACAAAAAagcggcagcggc < 1:7857025/35‑1 (MQ=25) aaaaaG‑CCGCCGCAGACAAAAAAgcggcaggggca > 1:10746376/1‑35 (MQ=255) aaaaaG‑CCGCCGCAGACAAAAAAgcggcagcggca > 1:6632138/1‑35 (MQ=255) aaaaaG‑CCGCCGCAGACAAAAAAgcggcagcggca > 1:15543709/1‑35 (MQ=255) aaacccCCGCCGCAGACAAAAAAgcggcagcggca < 1:3844024‑M2/29‑1 (MQ=255) aaaaG‑CCGCCGCAGACAAAAAAGCGGCAGCGGCaa > 1:19979155/1‑35 (MQ=255) aacccCCGCCGCAGACAAAAAAGCGGCAGCGGCaa < 1:11144650‑M2/30‑1 (MQ=255) aacccCCGCCGCAGACAAAAAAGCGGCAGCGGCaa < 1:2313847‑M2/30‑1 (MQ=255) aacccCCGCCGCAGACAAAAAAGCGGCAGCAGCaa < 1:14534837‑M2/30‑1 (MQ=255) aaaccCCGCCGCAGACAAAAAAGCGGCAGCGGCaa < 1:12630599‑M2/30‑1 (MQ=255) aaaG‑CCGCCGCAGACAAAAAAGCGGCAGGGGCaaa > 1:16990763/1‑35 (MQ=255) aaaG‑CCGCCGCAGACAAAAAAGCGGCAGCGGCcaa > 1:17052723/1‑35 (MQ=255) aaaG‑CCGCCGCAGACAAAAAAGCGGCAGCGGCaaa > 1:17127711/1‑35 (MQ=255) aaaG‑CCGCCGCAGACAAAAAAGCGGCAGCGGCaaa > 1:1476861/1‑35 (MQ=255) acccCCGCCGCAGACAAAAAAGCGGCAGCGGCaaa < 1:11588932‑M2/31‑1 (MQ=255) acccCCGCCGCAGACAAAAAAGCGGCAGCGGCaaa < 1:11491063‑M2/31‑1 (MQ=255) aaccCCGCCGCAGACAAAAAAGCGGCAGCGGCaaa < 1:6388349‑M2/31‑1 (MQ=255) aaG‑CCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:6497006/1‑35 (MQ=255) aaG‑CCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:701179/1‑35 (MQ=255) cgcCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa < 1:116035‑M2/32‑1 (MQ=255) ccCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAg < 1:13371087‑M2/33‑1 (MQ=255) ccCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAg < 1:19457405‑M2/33‑1 (MQ=255) ccCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAg < 1:14445539‑M2/33‑1 (MQ=255) ccgccgCAGACAAAAAAGCGGCAGCGGCAAAAACt > 1:16306248/1‑35 (MQ=255) | GCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAG‑CCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCT > REL606/757995‑758063 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |