New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 76423 = | 43 (0.420) | 4 (0.050) | 3/36 | NT | 7.3% | coding (903/1611 nt) | thiP | thiamin ABC transporter membrane protein |
? | REL606 | = 3891004 | 69 (0.900) | coding (451/1497 nt) | yieN | fused predicted transcriptional regulator: sigma54 activator protein/conserved protein |
Only 100 of 122 total aligned reads displayed.
CTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCGGGATTTTTTCTACGTGTGCA > REL606/3890970‑3891038 | ctgTCTGCTTCCGGCAGCTCGTTGGAGGCCGccac > 1:7214019/1‑35 (MQ=255) ctgTCTGCTTCCGGCAGCTCGTTGGAGGCCGccac > 1:7324537/1‑35 (MQ=255) tGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACc < 1:16165298‑M2/35‑2 (MQ=255) tGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACc > 1:13734953‑M2/1‑34 (MQ=255) gTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACca > 1:8736859‑M2/1‑33 (MQ=255) gTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACca > 1:13135895‑M2/1‑33 (MQ=255) tCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACcag > 1:15556762‑M2/1‑32 (MQ=255) cTGCTTCCGGCATCTCGTTGGAGGCCGCCACcagc < 1:274902‑M2/35‑5 (MQ=255) cTGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagc < 1:8258067‑M2/35‑5 (MQ=255) cTGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagc > 1:9009567‑M2/1‑31 (MQ=255) cTGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagc < 1:14474871‑M2/35‑5 (MQ=255) cTGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagc < 1:14503025‑M2/35‑5 (MQ=255) cTGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagc < 1:15326957‑M2/35‑5 (MQ=255) tGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagca < 1:13071199‑M2/35‑6 (MQ=255) tGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagca > 1:17392045‑M2/1‑30 (MQ=255) tctTCGGGCAGCTCGTTGGAGGCCGCCACcagcag > 1:950249‑M2/2‑29 (MQ=255) gCTTCCGGCAGCTCGTTGGAGGCCGCCCCcagcag < 1:19045485‑M2/35‑7 (MQ=255) cTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAgg > 1:8242581/1‑35 (MQ=255) ttCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGgc < 1:1214184/35‑1 (MQ=255) ttCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGgc < 1:11719663/35‑1 (MQ=255) tCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGgcg > 1:11230449/1‑35 (MQ=255) tCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGgcg > 1:2240573/1‑35 (MQ=255) ccGGCAGCTCGTTGGAGGCCGCCACCAGCAGgggc > 1:15826597/1‑35 (MQ=255) ggCAGCTCGTTGGAGGCCGCCACCAGCAGgcgcgt > 1:2795983/1‑33 (MQ=255) ggCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCAt < 1:15438054/35‑1 (MQ=255) ggCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCAt < 1:13858592/35‑1 (MQ=255) gCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATc > 1:20379815/1‑35 (MQ=255) gCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATc > 1:14687704/1‑35 (MQ=255) gCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATc > 1:5759587/1‑35 (MQ=255) gCAGCTCGTTGGAGGCCGCCACCAGCAGGCGAATc > 1:5382182/1‑35 (MQ=255) cAGCTCGTTGGAGGCCGCCACCAGCATGCGCATCg > 1:17090006/1‑35 (MQ=255) cAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCg > 1:5693137/1‑35 (MQ=255) cAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCg > 1:4110906/1‑35 (MQ=255) cAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCg < 1:5965434/35‑1 (MQ=255) cAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCg > 1:6820058/1‑35 (MQ=255) cAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCg > 1:8471419/1‑35 (MQ=255) cAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCg > 1:12093679/1‑35 (MQ=255) aGCTCGTTGGAGTCCGCCACCAGCAGGCGCATCgg > 1:5908694/1‑35 (MQ=255) aGCTCGTTGGAGGCTGCCACCAGCAGGCGCATCgg < 1:2927210/35‑1 (MQ=255) aGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCgg > 1:5320931/1‑35 (MQ=255) gCTGGTTGGAGGCCGCCACCAGCAGGCGCATCggg < 1:17589780/35‑1 (MQ=255) gCTCGTTGGAGGCCGCCACCAGCGGGCGGATCggg > 1:5157789/1‑35 (MQ=37) gCTCGTTGGAGGCCGCCACCAGCAGGCGCATCggg < 1:18767172/35‑1 (MQ=255) gCTCGTTGGAGGCCGCCACCAGCAGGCGCATCggg > 1:6744131/1‑35 (MQ=255) gCTCGTTGGAGGCCGACACCAGCAGGCGCATCggg < 1:15341132/35‑1 (MQ=255) gCTCGTGGGAGGCCGCCAACAGCAGGCGCATCggg < 1:10703678/35‑1 (MQ=37) tggTTGGGGGCCGCCACCAGCAGGCGCATCGGGAt < 1:6897505/33‑1 (MQ=37) cGTTGGAGGCCGCCACCAGCAGGCGCATCGGGGtt > 1:12686050/1‑35 (MQ=255) cGTTGGAGGCCGCCACCAGCAGGCGCATCGGGAtt > 1:8590944/1‑35 (MQ=255) cGTGGGAGGCCGCCACCAGCAGGCGCATCGGGAtt < 1:17943627/35‑1 (MQ=255) cGTGGGAGGCCGCCACCAGCAGGCGCATCGGGAtt < 1:6467840/35‑1 (MQ=255) gTTGGAGGCCGCCACCAGCAGGCGCATCGGGAttt < 1:12783655/35‑1 (MQ=255) tGGAGGCCGCCACCAGCAGGCGCATCGGGAttttt < 1:9496292/35‑1 (MQ=255) tGGAGGCCGCCACCAGCAGGCGCATCGGGAttttt > 1:2041071/1‑35 (MQ=255) tGGAGGCCGCCACCAGCAGGCGCATCGGGAttttt < 1:14203954/35‑1 (MQ=255) gggAGCCCGCCACCAGCAGGCGCATCGGGAttttt < 1:5187463/34‑1 (MQ=255) gggggCCGCCACCAGCAGGCGCATCGGGAtttttt < 1:11195453/32‑1 (MQ=255) gggggCCGCCAACAGCAGGCGCATCGGGAtttttt < 1:14399349/32‑1 (MQ=37) ggAGGCCGCCACCAGCAGGCGCATCGGGAtttttt < 1:20365281/35‑1 (MQ=255) ggAGCCCGCCACCAGCAGGCGCATCGGGAtttttt < 1:4172791/35‑1 (MQ=255) ggggCCGCCACCAGCAGGCGCATCGGGATTTTTTc < 1:76617/33‑1 (MQ=255) gAGGCCGCCACCAGCAGGCGCATCGGGATTTTTTc > 1:7802160/1‑35 (MQ=255) gAGGCCGCCACCAGCAGGCGCATCGGGATTTTTTc > 1:2903050/1‑35 (MQ=255) gAGGCCGCCACCAGCAGGCGCATCGGGATTTTTTc < 1:11889859/35‑1 (MQ=255) agcccgccACCAGCAGGCGCATCGGGATTTTTTCt < 1:2693994/32‑1 (MQ=255) aGGCCGCCACCAGCAGGCGCATCGGGATTTTTTCt < 1:2086597/35‑1 (MQ=255) aGGCCGCCACCAGCAGGCACATCGGGATTTTTTCt > 1:16956447/1‑35 (MQ=255) ggCCGCCACCAGCAGGCGCATCGGGATATTTTCTa > 1:8481048/1‑35 (MQ=255) gccgccACcagcagcagcgccagcacaattaacac > 1:8725569‑M2/1‑8 (MQ=255) gccgccACCAGTAGGCGCATCGGGATTTTTTCTAc < 1:19565201/35‑1 (MQ=255) cccgccACCAGCAGGCGCATCGGGATTTTTTCTAc < 1:20358104/34‑1 (MQ=255) ccgccACCAGCAGGCGCATCGGGATTTTTTCTACg > 1:2929930/1‑35 (MQ=255) ccgccACCAGCAGGCGCATCGGGATTTTTTCTACg > 1:1877820/1‑35 (MQ=255) ccgccACCAGCAGGCGCATCGGGATTTTTTCTACg < 1:2663300/35‑1 (MQ=255) cgccACCAGCAGGCGCATCGGGATTTTTTCTACgt < 1:18776155/35‑1 (MQ=255) cgccACCAGCAGGCGCATCGGGATTTTTTCTACgt < 1:7256082/35‑1 (MQ=255) cgccACCAGCAGGCGCATCGGGATTTTTTCTACgt > 1:18842451/1‑35 (MQ=255) cgccACCAGCAGGCGCATCGGGATTTTTTCTACgt < 1:5064199/35‑1 (MQ=255) cgccACCAGCAGGCGCATCGGGATTTTTTCTACgt < 1:6089621/35‑1 (MQ=255) cgacACcagcagcagcgccagcacaattaacaccg > 1:15622777‑M2/1‑6 (MQ=255) gccACCAGCAGGCGCATCGGGATTTTTTCTACgtg > 1:19453868/1‑35 (MQ=255) gccACCAGCAGGCGCATCGGGATTTTTTCTACgtg < 1:18366934/35‑1 (MQ=255) gccACCAGCAGGCGCATCGGGATTTTTTCTACgtg < 1:2952821/35‑1 (MQ=255) agcaccagcagcagcgccagcacaattaacaccgt > 1:9234295‑M2/3‑5 (MQ=255) agaaccagcagcagcgccagcacaattaacaccgt > 1:5382211‑M2/4‑5 (MQ=255) acaaccagcagcagcgccagcacaattaacaccgt > 1:17756461‑M2/4‑5 (MQ=255) gcaccagcagcagcgccagcacaattaacaccgtg > 1:16563706‑M2/2‑4 (MQ=255) caccagcagcagcgccagcacaattaacaccgtgt > 1:5268836‑M2/1‑3 (MQ=255) caccaGCAGGCGCATCGGGATTTTTTCTACGtgtg < 1:2885802/35‑1 (MQ=255) caccaGCAGGCGCATCGGGATTTTTTCTACGtgtg < 1:3176616/35‑1 (MQ=255) caccaGCAGGCGCATCGGGATTTTTTCTACGtgtg > 1:536570/1‑35 (MQ=255) aacaagcagcagcgccagcacaattaacaccgtgt > 1:5034668‑M2/2‑3 (MQ=255) accaGCAGGCGCATCGGGATTTTTTCTACGTGTGc < 1:7830579/35‑1 (MQ=255) accaGCAGGCGCATCGGGATTTTTTCTACGTGTGc < 1:12719864/35‑1 (MQ=255) accaGCAGGCGCATCGGGATTTTTTCTACGTGTGc < 1:1542496/35‑1 (MQ=255) ccggcagcagcgccagcacaattaacaccgtgtcg > 1:733036‑M2/1‑1 (MQ=255) ccagcagcagcgccagcacaattaacaccgtgtcg > 1:18123404‑M2/1‑1 (MQ=255) ccaGCAGGCGCATCGGGATTTTTTCTACGTGTGCa > 1:18751351/1‑35 (MQ=255) ccaGCAGGCGCATCGGGATTTTTTCTACGTGTGCa < 1:18904004/35‑1 (MQ=255) ccaGCAGGCGCATCGGGATTTTTTCTACGTGTGCa > 1:16723889/1‑35 (MQ=255) | CTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCGGGATTTTTTCTACGTGTGCA > REL606/3890970‑3891038 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |