New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 68792162 (0.600)12 (0.130) 4/44 NT 12.4% coding (1883/1947 nt) nagE fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA components
?REL606 970674 = 112 (1.190)intergenic (‑27/+28) pflB/focA pyruvate formate lyase I/formate transporter

Only 100 of 124 total aligned reads displayed.

GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATGTTGTGGCGGGT  >  REL606/687887‑687955
                                  |                                  
gtggtTTGCAGCAATATCGACGATTTCAGTGGCTT                                    <  1:1558219‑M1/35‑1 (MQ=255)
gtggtTTGCAGCAATATCGACGATTTCAGTGGCTT                                    <  1:5045756‑M1/35‑1 (MQ=255)
gtggtTTGCAGCAATATCGACGATTTCAGTGGCTT                                    <  1:6171197‑M1/35‑1 (MQ=255)
 tggtTTGCAGCAATATCGACGATTTCAGTGGCTTt                                   >  1:16440046‑M1/1‑34 (MQ=255)
 tggtTTGCAGCAATATCGACGATTTCAGTGGCTTt                                   >  1:7775530‑M1/1‑34 (MQ=255)
 tggtTTGCAGCAATATCGACGATTTCAGTGGCTTt                                   >  1:16818460‑M1/1‑34 (MQ=255)
 tggtTTGCAGCAATATCGACGATTTCAGTGGCTTg                                   <  1:9190583/35‑1 (MQ=255)
 tggtTTGCAGCAATATCGACGATTTCAGTGGCTTg                                   <  1:16402488/35‑1 (MQ=255)
  ggtTTGCAGCAATATCGACGATTTCAGTGGCTTtt                                  >  1:13833834‑M1/1‑33 (MQ=255)
  ggtTTGCAGCAATATCGACGATTTCAGTGGCTTtt                                  >  1:1261750‑M1/1‑33 (MQ=255)
  ggtTTGCAGCAATATCGACGATTTCAGTGGCTTcg                                  >  1:1055615‑M1/1‑33 (MQ=255)
  ggtTTGCAGCAATATCGACGATTTCAGTGGCTTGa                                  <  1:1388776/35‑1 (MQ=255)
   gtTTGCAGCAATATCGACGATTTCAGTGGCTTttt                                 >  1:7092271‑M1/1‑32 (MQ=255)
   gtTTGCAGCAATATCGACGATTTCAGTGGCTTtat                                 >  1:19049115‑M1/1‑32 (MQ=255)
   gtTTGCAGCAATATCGACGATTTCAGTGGCTTGAt                                 <  1:4027170/35‑1 (MQ=255)
    tttGCAGCAATATCGACGATTTCAGTGGCTTtttt                                >  1:20163532‑M1/1‑31 (MQ=255)
    tttGCAGCAATATCGACGATTTCAGTGGCTTtttt                                >  1:19177186‑M1/1‑31 (MQ=255)
    tttGCAGCAATATCGACGATTTCAGTGGCTTGATc                                <  1:1715767/35‑1 (MQ=255)
    tttGCAGCAATATCGACGATTTCAGTGGCTTGATc                                <  1:4460496/35‑1 (MQ=255)
     ttGCAGCAATATCGACGATTTCAGTGGCTTtttta                               >  1:10681714‑M1/1‑30 (MQ=255)
     ttGCAGCAATATCGACGATTTCAGTGGCTTGATCa                               <  1:7547918/35‑1 (MQ=255)
      tGCAGCAATATCGACGATTTCAGTGGCTTttttat                              >  1:7836629‑M1/1‑29 (MQ=255)
      tGCAGCAATATCGACGATTTCAGTGGCTTGATCAt                              <  1:15697261/35‑1 (MQ=255)
      tGCAGCAATATCGACGATCTCAGTGGCTTGATCAt                              >  1:4539508/1‑35 (MQ=255)
       gcagcaATATCGACGATTTCAGTGGCTTtattatt                             >  1:18974411‑M1/1‑28 (MQ=255)
        cagcaATATCGACGATTTCAGTGGCTTttttattt                            >  1:4856712‑M1/1‑27 (MQ=255)
        cagcaATATCGACGATTTCAGTGGCTTtttcatta                            >  1:14518547‑M1/1‑27 (MQ=255)
        cagcaATATCGACGATTTCAGTGGCTTGATCATTa                            <  1:14988894/35‑1 (MQ=255)
        cagcaATATCGACGATTTCAGTGGCTTGATCATTa                            <  1:13846154/35‑1 (MQ=255)
         agcaATATCGACGATTTCAGTGGCTTttttattta                           >  1:14334328‑M1/1‑26 (MQ=255)
         agcaATATCGACGATTTCAGTGGCTTttttattta                           >  1:13463554‑M1/1‑26 (MQ=255)
         agcaATATCGACGATTTCAGTGGCTTttttattta                           >  1:8357249‑M1/1‑26 (MQ=255)
         agcaATATCGACGATTTCAGTGGCTTtttcattta                           >  1:6399151‑M1/1‑26 (MQ=255)
         agcaATATCGACGATTTCAGTGGCTTGATCATTaa                           <  1:10296622/35‑1 (MQ=255)
         agcaATATCGACGATTTCAGTGGCTTGATCATTaa                           <  1:600219/35‑1 (MQ=255)
           caATATCGACGATTTCAGTGGCTTttttatttaaa                         >  1:8214687‑M1/1‑24 (MQ=255)
           caATATCGACGATTTCAGTGGCTTTTTTATTaaaa                         >  1:8650804/1‑34 (MQ=21)
           caATATCGACGATTTCAGTGGCTTGATCATTAAAg                         <  1:7820933/35‑1 (MQ=255)
           caATATCGACGATTTCAGTGGCTTGATCATTAAAg                         <  1:18377148/35‑1 (MQ=255)
            agtatCGACGATTTCAGTGGCTTGATCATTAAAGc                        <  1:19194631/33‑1 (MQ=255)
            aaTATCGACGATTTCAGTGGCTTttttatttaatc                        >  1:197555‑M1/1‑23 (MQ=255)
            aaTATCGACGATTTCAGTGGCTTTTTCACTaaaaa                        >  1:4337526/1‑33 (MQ=21)
            aaTATCGACGATTTCAGTGGCTTGATCATTAAAGc                        <  1:3553993/35‑1 (MQ=255)
             atatCGACGATTTCAGTGGCTTGATCATTAAAGCt                       <  1:2420432/35‑1 (MQ=255)
             atatCGACGATTTCAGTGGCTTGATCATTAAAGCt                       <  1:20541966/35‑1 (MQ=255)
             atatCGACGATTTCAGTGGCTTGATCATTAAAGCt                       <  1:11091210/35‑1 (MQ=255)
             atatCGACGATTTCAGTGGCTTGATCATTAAAGCn                       <  1:2809328/35‑1 (MQ=255)
              tatCGACGATTTCAGTTGCTTGATCATTAAAGCTc                      >  1:18790342/1‑35 (MQ=255)
               atCGACGATTTCAGTGGCTTGATCATTAAAGCTCa                     <  1:20059372/35‑1 (MQ=255)
               atCGACGATTTCAGTGGCTTGATCATTAAAGCTCa                     <  1:6813732/35‑1 (MQ=255)
               atCGACGATTTCAGTGGCTTGATCATTAAAGCTCa                     <  1:6014367/35‑1 (MQ=255)
               atCGACGATTTCAGTGGCTTGATCATTAAAGCTCa                     <  1:2474556/35‑1 (MQ=255)
                tCGACGATTTCAGTGGCTTGATCATTAAAGCTCAg                    <  1:13228560/35‑1 (MQ=255)
                tCGACGATTTCAGTGGCTTGATCATTAAAGCTCAg                    <  1:2265565/35‑1 (MQ=255)
                 cgacgaTTTCAGTGGCTTGATCATTAAAGCTCAgg                   <  1:14671823/35‑1 (MQ=255)
                 cgacgaTTTCAGTGGCTTGATCATTAAAGCTCAgg                   <  1:17570141/35‑1 (MQ=255)
                 cgacgaTTTCAGTGGCTTGATCATTAAAGCTCAgg                   <  1:6916075/35‑1 (MQ=255)
                   acgaTTTCAGTGGCTTGATCATTAAAGCTCAGGGc                 <  1:415958/35‑1 (MQ=255)
                    cgaTTTCAGTGGCTTGATCATTAAAGCTCAGGGcc                <  1:5326936/35‑1 (MQ=255)
                    cgaTTTCAGTGGCTTGATCATTAAAGCTCAGGGcc                <  1:16716359/35‑1 (MQ=255)
                     gaTTTCAGTGGCTTGATCATTAAAGCTCAGGGCCa               <  1:13279975/35‑1 (MQ=255)
                     gaTTTCAGTGGCTTGATCATTAAAGCTCAGGGCCa               <  1:6439212/35‑1 (MQ=255)
                     gaTTTCAGTGGCTTGATCATTAAAGCTCAGGGCCa               <  1:4640731/35‑1 (MQ=255)
                      aTTTCAGTGGCTTGATCATTAAAGCTCAGGGCCAt              <  1:5087282/35‑1 (MQ=255)
                      aTTTCAGTGGCTTGATCATTAAAGCTCAGGGCCAt              <  1:17708532/35‑1 (MQ=255)
                       tttCAGTGGCTTGATCATTAAAGCTCAGGGCCAtg             <  1:3755738/35‑1 (MQ=255)
                       tttCAGTGGCTTGATCATTAAAGCTCAGGGCCAtg             <  1:13503685/35‑1 (MQ=255)
                        ttCAGTGGCTTGATCATTAAAGCTCAGGGCCAtgt            <  1:13093801/35‑1 (MQ=255)
                        ttCAGTGGCTTGATCATTAAAGCTCAGGGCCAtgt            <  1:18058927/35‑1 (MQ=255)
                        ttCAGTGGCTTGATCATTAAAGCTCAGGGCAAtgt            <  1:14693610/35‑1 (MQ=255)
                         tCAGTGGCTTGATCATTAAAGCTCAGGGCCAtgtt           <  1:11989553/35‑1 (MQ=255)
                         tCAGTGGCTTGATCATTAAAGCTCAGGGCCAtgtt           <  1:12941391/35‑1 (MQ=255)
                          cAGTGGCTTGATCATTATAGCTCAGGGCCAtgttg          <  1:12948686/35‑1 (MQ=255)
                          cAGTGGCTTGATCATTAAAGCTCAGGGCCAtgttg          <  1:17022215/35‑1 (MQ=255)
                           aGTGGCTTGATCATTAAAGCTCGGGGCCAtgttgt         <  1:2573290/35‑1 (MQ=255)
                           aGTGGCTTGATCATTAAAGCTCAGGGCCAtgttgt         <  1:8194181/35‑1 (MQ=255)
                           aGTGGCTTGATCATTAAAGCTCAGGGCCAtgttgt         <  1:11988406/35‑1 (MQ=255)
                           aGTGGCTTGATCATTAAAGCTCAGGGCCAtgttgt         <  1:19724876/35‑1 (MQ=255)
                            gTGGCTTGATCATTAAAGCTCAGGGCCATGTtgtg        <  1:2305843/35‑1 (MQ=255)
                            gTGGCTTGATCATTAAAGCTCAGGGCCATGTtgtg        <  1:15229000/35‑1 (MQ=255)
                             tGGCTTGATCATTAAAGCTCAGGGCCATGTTGTgg       <  1:9555951/35‑1 (MQ=255)
                             tGGCTTGATCATTAAAGCTCAGGGCCATGTTGTgg       >  1:4251880/1‑35 (MQ=255)
                              ggCTTGATCATTAAAGCTCAGGGCCATGTTGTGGc      <  1:7919206/35‑1 (MQ=255)
                               gCTTGATCATTAAAGCTCAGGGCCATGTTGTGGCg     <  1:6505693/35‑1 (MQ=255)
                               gCTTGATCATTAAAGCTCAGGGCCATGTTGTGGCg     <  1:13222601/35‑1 (MQ=255)
                               gCTTGATCATTAAAGCTCAGGGCCATGTTGTGGCg     >  1:5221346/1‑35 (MQ=255)
                               gCTTGATCATTAAAGCTCAGGGCCATGTTGTGGCg     <  1:3568052/35‑1 (MQ=255)
                                cTTGATCATTAAAGCTCAGGGCCATGTTGTGGCgg    >  1:6879788/1‑35 (MQ=255)
                                cTTGATCATTAAAGCTCAGGGCCATGTTGTGGCgg    >  1:10524852/1‑35 (MQ=255)
                                cTTGATCATTAAAGCTCAGGGCCATGTTGTGGCgg    >  1:2758218/1‑35 (MQ=255)
                                 ttGATCATTAAAGCTCAGGGCCATGTTGTGGCggg   <  1:9081889/35‑1 (MQ=255)
                                 ttGATCATTAAAGCTCAGGGCCATGTTGTGGCggg   >  1:9826112/1‑35 (MQ=255)
                                 ttGATCATTAAAGCTCAGGGCCATGTTGTGGCggg   >  1:12062157/1‑35 (MQ=255)
                                 ttGATCATTAAAGCTCAGGGCCATGTTGTGGCggg   >  1:12385201/1‑35 (MQ=255)
                                 ttGATCATTAAAGCTCAGGGCCATGTTGTGGCggg   >  1:18088208/1‑35 (MQ=255)
                                 ttGATCATTAAAGCTCAGGGCCATGTTGTGGCggg   >  1:6710699/1‑35 (MQ=255)
                                 ttGATCATTAAAGCTCAGGGCCATGTTGTGGCggg   >  1:2159155/1‑35 (MQ=255)
                                  tttttatttactgcgtacttcgacaaccattaatg  >  1:15786843‑M1/1‑1 (MQ=255)
                                  tttttatttactgcgtacttcgacaaccattaatg  >  1:3280050‑M1/1‑1 (MQ=255)
                                  tGATCATTAAAGCTCAGGGCCATGTTGTGGCgggg  >  1:733896/1‑34 (MQ=255)
                                  |                                  
GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATGTTGTGGCGGGT  >  REL606/687887‑687955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.