New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3545201 | 81 (0.790) | 9 (0.120) | 3/36 | NT | 13.7% | coding (847/1575 nt) | nikA | nickel transporter subunit |
? | REL606 | = 4576439 | 53 (0.690) | coding (2/381 nt) | hpaF | 5‑carboxymethyl‑2‑hydroxymuconate delta‑isomerase |
Only 100 of 165 total aligned reads displayed.
GATGCTGGCGCTCAATACCGCCAAAGCCCCCACCAACGAGCTGGCAGTACGTGAAGCTCTTAATTACGC > REL606/3545167‑3545235 | gATGCTTGCGCTCAATACCGCCAAAGCCCCCACCA > 1:4937923‑M1/1‑35 (MQ=255) gATGCTGGCGCTCAATACCGCCAAAGCCCCCACCA > 1:1135735‑M1/1‑35 (MQ=255) aTGCTGGCGCTCAATACCGCCAAAGCCCCCACCaa > 1:10031344/1‑35 (MQ=255) aTGCTGGCGCTCAATACCGCCAAAGCCCCCACCaa > 1:887885/1‑35 (MQ=255) aTGCTGGCGCTCAATACCGCCAAAGCCCCCACCaa > 1:787612/1‑35 (MQ=255) aTGCTGGCGCTCAATACCGCCAAAGCCCCCACCaa > 1:413676/1‑35 (MQ=255) gCTGGCGCTCAATACCGCCAAAGCCCCCACCAACg > 1:7057686/1‑35 (MQ=255) cTGGCGCTCAATACCGCCAAAGCCCCCACTAACGa > 1:11779986/1‑35 (MQ=255) tGGCGCTCAATACCGCCAAAGCCCCCACCAACGAg > 1:14779315/1‑35 (MQ=255) ggCGCTCAATACCGCCAAAGCCCCCACCAACGAGc > 1:8661685/1‑35 (MQ=255) gcgcTCAATACCGCCAAAGCCCCCACCAACGAGCt > 1:9794612/1‑35 (MQ=255) gcgcTCAATACCGCCAAAGCCCCCACCAACGAGCt > 1:683295/1‑35 (MQ=255) gcgcTCAATACCGCCAAAGCCCCCACCAACGAGCt > 1:20349637/1‑35 (MQ=255) cgcTCAATACCGCCAAAGCCCCCACCAACGAGCTg > 1:19714587/1‑35 (MQ=255) gcTCAATACCGCCAAAGCCCCCACCAACGAGCTgg > 1:9024244/1‑35 (MQ=255) gcTCAATACCGCCAAAGCCCCCACCAACGAGCTgg > 1:18872027/1‑35 (MQ=255) tCAATACCGCCAAAGCCCCCACCAACGAGCTGGCa > 1:16328908/1‑35 (MQ=255) cAATACCGCCAAAGCCCCCACCAACGAGCTGGCAg > 1:11286148/1‑35 (MQ=255) cAATACCGCCAAAGCCCCCACCAACGAGCTGGCAg > 1:10837027/1‑35 (MQ=255) aaTACCGCCAAAGCCCCCACCAACGAGCTGGCAGt > 1:9308348/1‑35 (MQ=255) aaTACCGCCAAAGCCCCCACCAACGAGCTGGCAGt > 1:5745214/1‑35 (MQ=255) aaTACCGCCAAAGCCCCCACCAACGAGCTGGCAGt > 1:14034012/1‑35 (MQ=255) cccccGCCAAAGCCCCCACCAACGAGCTGGCAGTa < 1:2227825/32‑1 (MQ=255) cccccGCCAAAGCCCCCACCAACGAGCTGGCAGTa < 1:16325869/32‑1 (MQ=255) cccccGCCAAAGCCCCCACCAACGAGCTGGCAGTa < 1:5185347/32‑1 (MQ=255) tACCGCCAAAGCCCCCACCAACGAGCTGGCAGGAc > 1:18354773/1‑35 (MQ=255) cccgCGAAAGCCCCCACCAtgccgcactttatcgt < 1:3593437‑M1/34‑17 (MQ=255) cccGCCAAAGCCCCCGCCAACGAGCTGGCAGTACg < 1:16351764/34‑1 (MQ=255) aCCGCCAAAGCCCCCACCAACGAGCTGGCAGTACg > 1:15730247/1‑35 (MQ=255) ccGCCAAATCCCCCACCAACTAGCTGGCAGTACGt > 1:8202675/1‑35 (MQ=38) ccGCCAAAGCCCCCACCAACGAGCTGGCAGTACGt < 1:9691068/35‑1 (MQ=255) ccGCCAAAGCCCCCACCAACGAGCTGGCAGTACGt > 1:14877776/1‑35 (MQ=255) ccGCCAAAGCCCCCACCAACGAGCTGGAAGTACGt < 1:15431585/35‑1 (MQ=255) ccGCAAAAGCCCCCACCAtgccgcactttatcgtg < 1:3656272‑M1/35‑18 (MQ=255) cGCCAAAGCCCCCACCAACGAGCTGGCAGTACggt > 1:17075996/1‑33 (MQ=255) cGCCAAAGCCCCCACCAACGAGCTGGCAGTACGTg < 1:2452008/35‑1 (MQ=255) cGCCAAAGCCCCCACCAACGAGCTGGCAGTACGTg > 1:13316458/1‑35 (MQ=255) cGCCAAAGCCCCCACCAACGAGCTGGCAGTACGTg > 1:16837136/1‑35 (MQ=255) cGCCAAAGCCCCCACCAACGAGCTGGCAGGACGTg > 1:8678556/1‑35 (MQ=255) tctaaagccCCCACCAtgccgcactttatcgtgga < 1:3043947‑M1/32‑20 (MQ=255) gCCAAAGCCCCCACCAACGAGCTGGCAGGACGTGa > 1:18117646/1‑35 (MQ=255) ccAAAGCCCCCACCAACGAGCTGGCAGTACGTGaa > 1:752899/1‑35 (MQ=255) ccAAAGCCCCCACCAACGAGCTGGCAGTACGTGaa > 1:3622997/1‑35 (MQ=255) ccAAAGCCCCCACCAACGAGCTGGCAGTACGTGaa > 1:11411537/1‑35 (MQ=255) gaaagCCCCCACCAtgccgcactttatcgtggaat < 1:9051795‑M1/34‑22 (MQ=255) gaaacCCCCCACCAtgccgcactttatcgtggaat < 1:3895577‑M1/34‑22 (MQ=255) cAAAGCCCCCACCAACGAGCTGGCAGTACGTGAAg < 1:5610477/35‑1 (MQ=255) cAAAGCCCCCACCAACGAGCTGGCAGTACGTGAAg < 1:9463147/35‑1 (MQ=255) cAAAGCCCCCACCAACGAGCTGGCAGTACGTGAAg > 1:2789085/1‑35 (MQ=255) aaaGCCCCCACCAtgccgcactttatcgtggaatg < 1:3328647‑M1/35‑23 (MQ=255) aaaGCCCCCACCAACGAGCTGGCAGTACGTGAAGc > 1:18132947/1‑35 (MQ=255) aaGCCCCCACCAACGAGCTGGCAGTACGTGAAGct < 1:815514/35‑1 (MQ=255) aaGCCCCCACCAACGAGCTGGCAGTACGTGAAGct > 1:16078443/1‑35 (MQ=255) aGCCCCCACCAtgccgcactttatcgtggaatgta < 1:10449628‑M1/35‑25 (MQ=255) aGCCCCCACCAtgccgcactttatcgtggaatgta < 1:4285340‑M1/35‑25 (MQ=255) aGCCCCCACCAACGAGCTGGCAGTACGTGAAGctc < 1:10241158/35‑1 (MQ=255) aGCCCCCACCAACGAGCTGGCAGTACGTGAAGctc < 1:4040728/35‑1 (MQ=255) gCCCCCACCAtgccgcactttatcgtggaatgtac < 1:14907072‑M1/35‑26 (MQ=255) gCCCCCACCAACGAGCTGGCAGTACGTGAAGctct < 1:10594014/35‑1 (MQ=255) gCCCCCACCAACGAGCTGGCAGTACGTGAAGctct < 1:2590750/35‑1 (MQ=255) gCCCCCACCAACGAGCTGGCAGTACGTGAAGctct < 1:11635129/35‑1 (MQ=255) gCCCCCACCAACGAGCTGGCAGTACGTGAAGctct < 1:12873420/35‑1 (MQ=255) cccccACCAtgccgcactttatcgtggaatgtact < 1:11029827‑M1/35‑27 (MQ=255) cccccACCAACGAGCTGGCAGTACGTGAAGCTCtt < 1:11870146/35‑1 (MQ=255) cccccACCAACGAGCTGGCAGTACGTGAAGCTCtt < 1:3171183/35‑1 (MQ=255) cccccAACAACGAGCTGGCAGTACGTGAAGCTCtt < 1:17555099/35‑1 (MQ=255) ccccACCAACGAGCTGGCAGTACGTGAAGCTCTTa < 1:8494850/35‑1 (MQ=255) ccccACCAACGAGCTGGCAGTACGTGAAGCTCTTa < 1:19035670/35‑1 (MQ=255) cccACCAtgccgcactttatcgtggaatgtactga < 1:14883858‑M1/35‑29 (MQ=255) cccACCAACGAGCTGGCAGTACGTGAAGCTCTTaa < 1:17911260/35‑1 (MQ=255) cccACCAACGAGCTGGCAGTACGTGAAGCTCTTaa < 1:5960179/35‑1 (MQ=255) ccaccatgccgcactttatcgtggaatgtactgaa > 1:4676236‑M1/1‑6 (MQ=255) ccaccatgccgcactttatcgtggaatgtactgaa > 1:12818447‑M1/1‑6 (MQ=255) ccaccatgccgcactttatcgtggaatgtactgaa < 1:13715684‑M1/35‑30 (MQ=255) caccatgccgcactttatcgtggaatgtactgaaa > 1:3438335‑M1/1‑5 (MQ=255) caccatgccgcactttatcgtggaatgtactgaaa > 1:10130808‑M1/1‑5 (MQ=255) caccaACGAGCTGGCAGTACGTGAAGCTCTTAAtt < 1:17423920/35‑1 (MQ=255) accatgccgcactttatcgtggaatgtactgaaaa > 1:1365787‑M1/1‑4 (MQ=255) accatgccgcactttatcgtggaatgtactgaaaa > 1:2069380‑M1/1‑4 (MQ=255) accatgccgcactttatcgtggaatgtactgaaaa > 1:19889601‑M1/1‑4 (MQ=255) accatgccgcactttatcgtggaatgtactgaaaa < 1:18737406‑M1/35‑32 (MQ=255) accatgccgcactttatcgtggaatgtactgaaaa > 1:15583880‑M1/1‑4 (MQ=255) accaACGAGCTGGCAGTACGTGAAGCTCTTAATTa > 1:11972177/1‑35 (MQ=255) accaACGAGCTGGCAGTACGTGAAGCTCTTAATTa > 1:12450063/1‑35 (MQ=255) accaACGAGCTGGCAGTACGTGAAGCTCTTAATTa < 1:7408693/35‑1 (MQ=255) accaACGAGCTGGCAGTACGTGAAGCTCTTAATTa < 1:15928206/35‑1 (MQ=255) ccatgccgcactttatcgtggaatgtactgaaaat > 1:1336618‑M1/1‑3 (MQ=255) ccatgccgcactttatcgtggaatgtactgaaaat > 1:10694644‑M1/1‑3 (MQ=255) ccaACGAGCTGGCAGTACGTGAAGCTCTTAATTAc < 1:13097859/35‑1 (MQ=255) ccaACGAGCTGGCAGTACGTGAAGCTCTTAATTAc < 1:12740156/35‑1 (MQ=255) catgccgcactttatcgtggcatgtactgaaaata > 1:14283988‑M1/1‑2 (MQ=255) caACGAGCTGGCAGTACGTGAAGCTCTTAATTAcg < 1:299621/35‑1 (MQ=255) caACGAGCTGGCAGTACGTGAAGCTCTTAATTAcg < 1:1938835/35‑1 (MQ=255) caACGAGCTGGCAGTACGTGAAGCTCTTAATTAcg < 1:19531636/35‑1 (MQ=255) caACGAGCTGGCAGTACGTGAAGCTCTTAATTAcg < 1:14310879/35‑1 (MQ=255) atgccgcactttatcgtggaatgtactgaaaatat < 1:15967651‑M1/35‑35 (MQ=255) atgccgcactttatcgtggaatgtactgaaaatat < 1:11443485‑M1/35‑35 (MQ=255) aaCGAGCTGGCAGTACGTGAAGCTCTTAATTAcgc < 1:10308487/35‑1 (MQ=255) aaCGAGCTGGCAGTACGTGAAGCTCTTAATTAcgc < 1:12514841/35‑1 (MQ=255) aaCGAGCTGGCAGTACGTGAAGCTCTTAATTAcgc < 1:2029799/35‑1 (MQ=255) | GATGCTGGCGCTCAATACCGCCAAAGCCCCCACCAACGAGCTGGCAGTACGTGAAGCTCTTAATTACGC > REL606/3545167‑3545235 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |