New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 370493571 (0.690)362 (5.280) 9/32 NT 88.4% intergenic (+1603/+1) yibG/yibH hypothetical protein/hypothetical protein
?REL606 = 3741809 NA (NA)noncoding (157/768 nt) IS1 repeat region

Only 100 of 984 total aligned reads displayed.

CAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTG  >  REL606/3704901‑3704969
                                  |                                  
cAAGGAGCAAAGTTCCATAATctcccccctccccc                                    >  1:18883809/1‑35 (MQ=255)
 aaGGAGCAAAGTTCCATAATCTCccccctccccct                                   >  1:1117963/1‑35 (MQ=255)
  aGGAGCAAAGTTCCATAATCTCCcccctccccctc                                  <  1:3776247/35‑1 (MQ=255)
   ggAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCa                                 <  1:8056838/35‑1 (MQ=255)
        aaaGTTCCATAATCTCCCCCCTCCCCCTCAATGAt                            >  1:5860907/1‑35 (MQ=255)
            ttCCATAATCTCCCCCCTCCCCCTCAATGATCCaa                        >  1:8172940/1‑35 (MQ=255)
             tCCATAATCTCCCCCCTCCCCCTCAATGATCCaaa                       >  1:13336989/1‑35 (MQ=255)
             tCCATAATCTCCCCCCTCCCCCTCAATGATCCaaa                       <  1:17298608/35‑1 (MQ=255)
               cATAATCTCCCCCCTCCCCCTCAATGATCCAAATa                     <  1:34609/35‑1 (MQ=255)
                 tAATCTCCCCCCTCCCCCTCAATGATCCAAATaaa                   >  1:14704765/1‑35 (MQ=255)
                  aaTCTCCCCCCTCCCCCTCAATGATCCAAATAAAg                  <  1:2407141/35‑1 (MQ=255)
                   aTCTCCCCCCTCCCCCTCAATGATCCAANTAAANn                 >  1:7398558/1‑35 (MQ=255)
                     cccccccctcccccccccccccctgccgtaaaaca               <  1:16562603‑M1/33‑22 (MQ=255)
                      ccccccctcccccccccccccctgccgtaaaacat              <  1:7297093‑M1/34‑23 (MQ=255)
                      cccccccccccccccccccccctgccgtaaaacat              <  1:9661754‑M1/34‑23 (MQ=255)
                        ccctctcccccccccccccctgccgtaaaacatgg            <  1:6827010‑M1/35‑25 (MQ=255)
                        ccccctcccccccccccccctgccgtaaaacatgg            <  1:3174452‑M1/35‑25 (MQ=255)
                        ccccctaccccccccccccctgccgtaaaacatgg            <  1:1692899‑M1/35‑25 (MQ=255)
                        cccccccccccccccccccctgccgtaaaacatgg            <  1:5249125‑M1/35‑25 (MQ=255)
                         gcccccccccccccccccctgccgtaaaacatggc           <  1:10001363‑M1/34‑26 (MQ=255)
                         ccgctcccccccccccccctgccgtaaaacatggc           <  1:6232531‑M1/32‑26 (MQ=255)
                         cccctcccccccccccccctgccgtaaaacatggc           <  1:18750760‑M1/35‑26 (MQ=255)
                         ccccccccccccccccccctgccgtaaaacatggc           <  1:10386703‑M1/35‑26 (MQ=255)
                         ccccccccccccccccccctgccgtaaaacatggc           <  1:19402073‑M1/35‑26 (MQ=255)
                         ccccccccccccccccccctgccgtaaaacatggc           <  1:2254341‑M1/35‑26 (MQ=255)
                         ccccccccccccccccccctgccgtaaaacatggc           <  1:6042285‑M1/35‑26 (MQ=255)
                         ccccccccccccccccccctgccgtaaaacatggc           <  1:5023491‑M1/35‑26 (MQ=255)
                          ctctcccccccccccccctgccgtaaaacatggca          <  1:4627880‑M1/33‑27 (MQ=255)
                          ccctcccccccccccccctgccgtaaaacatggca          <  1:7115115‑M1/35‑27 (MQ=255)
                          ccctcccccccccccccctgccgtaaaacatggca          <  1:1246778‑M1/35‑27 (MQ=255)
                          ccctcccccccccccccctgccgtaaaacatggca          <  1:8550075‑M1/35‑27 (MQ=255)
                          ccctcccccccccccccctgccgtaaaacatggca          <  1:15366799‑M1/35‑27 (MQ=255)
                          ccctcccccccccccccctgccgtaaaacatggca          <  1:12060984‑M1/35‑27 (MQ=255)
                          ccctcccccccccccccctgccgtaaaacatggca          <  1:7672463‑M1/35‑27 (MQ=255)
                          cccccccccccccccccctgccgtaaaacatggca          <  1:13544178‑M1/35‑27 (MQ=255)
                          cccccccccccccccccctgccgtaaaacatggca          <  1:18009651‑M1/35‑27 (MQ=255)
                           tctcccccccccccccctgccgtaaaacatggcaa         <  1:6992204‑M1/34‑28 (MQ=255)
                           cctctcccccccccccctgccgtaaaacatggcaa         <  1:18493825‑M1/35‑28 (MQ=255)
                           cctcccccccccccccctgccgtaaaacatggcaa         <  1:5750491‑M1/35‑28 (MQ=255)
                           ccccccccccccccccctgccgtaaaacatggcaa         <  1:359024‑M1/32‑28 (MQ=255)
                           ccccccccccccccccctgccgtaaaacatggcaa         <  1:15906094‑M1/32‑28 (MQ=255)
                            tccccccccccccccctgccgtaaaacatggcaac        <  1:11852865‑M1/33‑29 (MQ=255)
                            ctctcccccccccccctgccgtaaaacatggcaac        <  1:15109921‑M1/35‑29 (MQ=255)
                            ctctcccccccccccctgccgtaaaacatggcaac        <  1:6541242‑M1/35‑29 (MQ=255)
                            ctcccccccccccccctgccgtaaaacatggcaac        <  1:2894279‑M1/35‑29 (MQ=255)
                            ctcccccccccccccctgccgtaaaacatggcaac        <  1:15720469‑M1/35‑29 (MQ=255)
                            ctcccccccccccccctgccgtaaaacatggcaac        <  1:1256226‑M1/35‑29 (MQ=255)
                            ctcccccccccccccctgccgtaaaacatggcaac        <  1:20393904‑M1/35‑29 (MQ=255)
                            ctcccccccccccccctgccgtaaaacatggcaac        <  1:19916167‑M1/35‑29 (MQ=255)
                            cccccccccccccccctgccgtaaaacatggcaac        <  1:6590272‑M1/33‑29 (MQ=255)
                             tctcccccccccccctgccgtaaaacatggcaact       <  1:335415‑M1/32‑30 (MQ=255)
                             tcccccccccccccctgccgtaaaacatggcaact       <  1:2059844‑M1/35‑30 (MQ=255)
                             tcccccccccccccctgccgtaaaacatggcaact       <  1:13145265‑M1/35‑30 (MQ=255)
                             ccccccccccccccctgccgtaaaacatggcaact       <  1:12908969‑M1/34‑30 (MQ=255)
                             ccccccccccccccctgccgtaaaacatggcaact       <  1:3976502‑M1/34‑30 (MQ=255)
                             ccccccccccccccctgccgtaaaacatggcaact       <  1:14898478‑M1/34‑30 (MQ=255)
                             ccccccccccccccctgccgtaaaacatggcaact       <  1:8960645‑M1/34‑30 (MQ=255)
                             ccccccccccccccctgccgtaaaacatggcaact       <  1:17730362‑M1/34‑30 (MQ=255)
                             ccccccccccccccctgccgtaaaacatggcaact       <  1:3032012‑M1/34‑30 (MQ=255)
                              cccccccccccccctgccgtaaaacatggcaactg      <  1:4218192‑M1/35‑31 (MQ=255)
                              cccccccccccccctgccgtaaaacatggcaactg      <  1:4805207‑M1/35‑31 (MQ=255)
                              cccccccccccccctgccgtaaaacatggcaactg      <  1:9816133‑M1/35‑31 (MQ=255)
                              cccccccccccccctgccgtaaaacatggcaactg      <  1:5459269‑M1/35‑31 (MQ=255)
                              cccccccccccccctgccgtaaaacatggcaactg      <  1:13955733‑M1/35‑31 (MQ=255)
                              cccccccccccccctgccgtaaaacatggcaactg      <  1:19801274‑M1/35‑31 (MQ=255)
                              cccccccccccccctgccgtaaaacatggcaactg      <  1:16768607‑M1/35‑31 (MQ=255)
                              cccccccccccccctgccgtaaaacatggcaactg      <  1:17097291‑M1/35‑31 (MQ=255)
                               tcccccccccccctgccgtaaaacatggcaactgc     <  1:17544241‑M1/34‑32 (MQ=255)
                               cccctcAATGATCCAAATAAAGATAATGCATCCAg     <  1:12784771/35‑1 (MQ=255)
                               ccccgcccccccctgccgtaaaacatggcaactgc     <  1:1227516‑M1/35‑32 (MQ=255)
                               ccccccccccccctgccgtaaaacatggcaactgc     <  1:9340388‑M1/35‑32 (MQ=255)
                               ccccccccccccctgccgtaaaacatggcaactgc     <  1:16031849‑M1/35‑32 (MQ=255)
                               ccccccccccccctgccgtaaaacatggcaactgc     <  1:7915808‑M1/35‑32 (MQ=255)
                               ccccccccccccctgccgtaaaacatggcaactgc     <  1:11043229‑M1/35‑32 (MQ=255)
                               ccccccccccccctgccgtaaaacatggcaactgc     <  1:4299801‑M1/35‑32 (MQ=255)
                               ccccccccccccctgccgtaaaacatggcaactgc     <  1:19173668‑M1/35‑32 (MQ=255)
                               ccccccccccccctgccgtaaaacatggcaactgc     <  1:20193948‑M1/35‑32 (MQ=255)
                               ccccccccccccctgccgtaaaacatggcaactgc     <  1:2677979‑M1/35‑32 (MQ=255)
                               cccccaccccccctgccgtaaaacatggcaactgc     <  1:873614‑M1/35‑32 (MQ=255)
                                ccctcAATGATCCAAATAAAGATAATGCATCCAGc    <  1:10814700/35‑1 (MQ=255)
                                cccccccccccctgccgtaaaacatggcaactgca    <  1:9449029‑M1/35‑33 (MQ=255)
                                cccccccccccctgccgtaaaacatggcaactgca    <  1:12193846‑M1/35‑33 (MQ=255)
                                cccccccccccctgccgtaaaacatggcaactgca    <  1:18149724‑M1/35‑33 (MQ=255)
                                cccccccccccctgccgtaaaacatggcaactgca    <  1:19683326‑M1/35‑33 (MQ=255)
                                 tcccccccccctgccgtaaaacatggcaactgcag   <  1:10646920‑M1/34‑34 (MQ=255)
                                 cctcAATGATCCAAATAAAGATAATGCATCCAGCt   >  1:10521966/1‑35 (MQ=255)
                                 cctcAATGATCCAAATAAAGATAATGCATCCAGCt   <  1:1158465/35‑1 (MQ=255)
                                 ccccccccccctgccgtaaaacatggcaactgcag   <  1:14203583‑M1/35‑34 (MQ=255)
                                 ccccccccccctgccgtaaaacatggcaactgcag   <  1:13854018‑M1/35‑34 (MQ=255)
                                 ccccccccccctgccgtaaaacatggcaactgcag   <  1:16244883‑M1/35‑34 (MQ=255)
                                 ccccccccccctgccgtaaaacatggcaactgcag   <  1:18271243‑M1/35‑34 (MQ=255)
                                 ccccccccccctgccgtaaaacatggcaactgcag   <  1:4448424‑M1/35‑34 (MQ=255)
                                  ccccgccccctgccgtaaaacatggcaactgcagt  <  1:10156911‑M1/35‑35 (MQ=255)
                                  cccccccccctgccgtaaaacatggcaactgcagt  <  1:11398477‑M1/35‑35 (MQ=255)
                                  cccccccccctgccgtaaaacatggcaactgcagt  <  1:9153800‑M1/35‑35 (MQ=255)
                                  cccccccccctgccgtaaaacatggcaactgcagt  <  1:6737904‑M1/35‑35 (MQ=255)
                                  cccccccccctgccgtaaaacatggcaactgcagt  <  1:14378545‑M1/35‑35 (MQ=255)
                                  cccccccccctgccgtaaaacatggcaactgcagt  <  1:15485915‑M1/35‑35 (MQ=255)
                                  cccccccccctgccgtaaaacatggcaactgcagt  <  1:16372330‑M1/35‑35 (MQ=255)
                                  cccccccccctgccgtaaaacatggcaactgaagt  <  1:8295638‑M1/35‑35 (MQ=255)
                                  |                                  
CAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTG  >  REL606/3704901‑3704969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.