New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2966042 =52 (0.510)5 (0.060) 3/36 NT 9.1% coding (1345/1992 nt) tktA transketolase 1, thiamin‑binding
?REL606 3780481 = 61 (0.790)coding (513/1359 nt) ECB_03520 conserved hypothetical protein

Only 100 of 125 total aligned reads displayed.

GTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGTGCGTATTCCACG  >  REL606/2966008‑2966076
                                  |                                  
gtgtAAACCATCACCTGACGCTGTTTCATCAgcgc                                    <  1:9871137/35‑1 (MQ=255)
gtgtAAACCATCACCTGACGCTGTTTCATCAgcgc                                    >  1:12507174/1‑35 (MQ=255)
 tttAAACCATCACCTGACGCTGTTTCATCAGCGCa                                   <  1:15064643/33‑1 (MQ=255)
 tgtAAACCATCACCTGACGCTGTTTCATCAGCGCa                                   <  1:8791843/35‑1 (MQ=255)
 tgtAAACCATCACCTGACGCTGTTTCATCAGCGCa                                   <  1:16682974/35‑1 (MQ=255)
 tgtAAACCATCACCTGACGCTGTTTCATCAGCGCa                                   >  1:8804414/1‑35 (MQ=255)
 tgtAAACCATCACCTGACGCTGTTTCATCAGCGCa                                   <  1:15634479/35‑1 (MQ=255)
 tgtAAACCATCACCTGACGCTGTTTCATCAGCGCa                                   >  1:15412560/1‑35 (MQ=255)
  gtAAACCATCCCCTGACGCTGTTTCATCAGCGCAg                                  <  1:20097783/35‑1 (MQ=255)
  gtAAACCATCACCTGACGCTGTTTCATCAGCGCAg                                  <  1:6348328/35‑1 (MQ=255)
  gtAAACCATCACCTGACGCTGTTTCATCAGCGCAg                                  >  1:4420431/1‑35 (MQ=255)
  gtAAACCATCACCTGACGCTGTTTCATCAGCGCAg                                  >  1:3443428/1‑35 (MQ=255)
  gtAAACCATCACCTGACGCTGTTTCATCAGCGCAg                                  >  1:17324291/1‑35 (MQ=255)
   tAAACCATCCCCTGACGCTGTTTCATCAGCGCAGc                                 <  1:16758732/35‑1 (MQ=255)
   tAAACCATCCCCTGACGCTGTTTCATCAGCGCAGc                                 <  1:9200350/35‑1 (MQ=255)
   tAAACCATCATCTGACGCTGTTTCATCAGCGCAGc                                 >  1:5972967/1‑35 (MQ=255)
   tAAACCATCACCTGACGCTGTTTCATCAGCGCAGc                                 >  1:16029487/1‑35 (MQ=255)
   tAAACCATCACCTGACGCTGTTTCATCAGCGCAGc                                 >  1:10169334/1‑35 (MQ=255)
   tAAACCATCACCTGACGCTGTTTCATCAGCGCAGc                                 <  1:10953065/35‑1 (MQ=255)
   tAAACCATCACCTGACGCTGTTTCATCAGCGCAGc                                 >  1:12656848/1‑35 (MQ=255)
    aaaCCATCACCTGACGCTGTTTCATCAGCGCAGcc                                >  1:8049626/1‑35 (MQ=255)
    aaaCCATCACCTGACGCTGTTTCATCAGCGCAGcc                                <  1:14305526/35‑1 (MQ=255)
    aaaCCATCACCTGACGCTGTTTCATCAGCGCAGcc                                <  1:15974738/35‑1 (MQ=255)
    aaaCCATCACCTGACGCTGTTTCATCAGCGCAGcc                                >  1:15338319/1‑35 (MQ=255)
     acccATCCCCTGACGCTGTTTCATCAGCGCAGCCa                               <  1:7464388/33‑1 (MQ=37)
     aaCCATCACCTGACGCTGTTTCATCAGCGCAGCCa                               >  1:7736947/1‑35 (MQ=255)
      aCCATCACCTGACGCTGGTTCATCAGCCCAGCCAt                              >  1:708012/1‑35 (MQ=37)
       ccATCACCTGACGCTGTTTCATCAGCGCAGCCAta                             >  1:3877331/1‑35 (MQ=255)
        cATCCCCTGACGCTGTTTCATAAGCGCAGCCAtac                            <  1:30973/35‑1 (MQ=37)
        cATCACCTGACGCTGTTTCATCAGCGCAGCCAtac                            >  1:18805879/1‑35 (MQ=255)
        cATCACCTGACGCTGTTTCATCAGCGCAGCCAtac                            >  1:3922187/1‑35 (MQ=255)
         aTCACCTGACGCTGTTTCATCAGCGCAGCCAtacg                           >  1:18850130/1‑35 (MQ=255)
         aTCACCTGACGCTGTTTCATCAGCGCAGCCAtacg                           >  1:4615999/1‑35 (MQ=255)
         aTCACCTGACGCTGTTTCATCAGCGCAGCCAtacg                           >  1:5553243/1‑35 (MQ=255)
          tCACCTGACGCTGTTTCATCAGCGCAGCCAtacgt                          >  1:19933321/1‑35 (MQ=255)
           cACCTGACGCTGTTTCATCAGCGCAGCCAtacgta                         >  1:15206143/1‑35 (MQ=255)
           cACCTGACGCTGGTTCATCAGCGCAGCCAtacgca                         >  1:18140306/1‑33 (MQ=37)
            aCCTGACGCTGTTTCATCAGCGCAGCCAtacgtac                        >  1:13097524/1‑35 (MQ=255)
            aCCTGACGCTGTTTCATCAGCGCAGCCAtacgtac                        >  1:8594843/1‑35 (MQ=255)
              cTGACGCTGTTTCATCAGCGCAGCCATACGTACgg                      >  1:10503367/1‑35 (MQ=255)
              cTGACGCTGTTTCATCAGCGCAGCCATACGTACgg                      >  1:19780035/1‑35 (MQ=255)
              cTGACGCTGTTTCATCAGCGCAGCCATACGTACgg                      >  1:1777784/1‑35 (MQ=255)
              cTGACGCTGTTTCATCAGCGCAGCCATACGTACgg                      >  1:14737818/1‑35 (MQ=255)
               tGACGCTGTTTCATCAGCGCAGCCATACGTACggg                     >  1:11683499/1‑34 (MQ=255)
                 aCGCTGTTTCATCAGCGCAGCCATACGTACggggg                   >  1:12556144/1‑32 (MQ=255)
                 aCGCTGTTTCATCAGCGCAGCCATACGTACGGCGt                   >  1:19773159/1‑35 (MQ=255)
                    cTGTTTCATCAGCGCAGCCATACGTACGGCGTTAc                >  1:17967643/1‑35 (MQ=255)
                    cTGTTTCATCAGCGCAGCCATACGTACGGCGTTAc                >  1:18414424/1‑35 (MQ=255)
                    cTGTTTCATCAGCGCAGCAATACGTACGGCGTTAc                <  1:9771081/35‑1 (MQ=255)
                     tttttCATCCCCCCAGCCATACGTAGGGCGTTACg               <  1:6380562/33‑1 (MQ=16)
                     tGTTTCATCAGCGCAGCCATACGTACGGCGTTACg               >  1:4349333/1‑35 (MQ=255)
                     tGTTTCATCAGCGCAGCCATACGTACGGCGTTACg               >  1:7517140/1‑35 (MQ=255)
                     tGTTTCATCAGCGCAGCCATACGTACGGCGTTACg               >  1:5013451/1‑35 (MQ=255)
                     tGTTTCATCAGCGCAGCCATACGTACGGCGTTACg               >  1:5377264/1‑35 (MQ=255)
                     tGTTTCATCAGCGCAGCCATACGTACCGCGTTACg               >  1:1143641/1‑35 (MQ=255)
                      ttttCACCACCCCAGCCATACGTACGGCGTTACGt              <  1:17812968/34‑1 (MQ=25)
                      gTTTCATCAGCGCAGCCATACGTACGGCGTTACGt              >  1:11932339/1‑35 (MQ=255)
                        ttCATCAGCGCAGCCATACGTACGGCGTTACGTGc            >  1:4903763/1‑35 (MQ=255)
                        ttCACCAGCGCAGCCATACGTACGGCGTTACGTGc            <  1:19000522/35‑1 (MQ=255)
                        ttCACCACCCCAGCCATACGTACGGCGTTACGTGc            <  1:13282479/35‑1 (MQ=25)
                        ttCACCACCCCAGCCATACGTACGGCGTTACGTGc            <  1:10191396/35‑1 (MQ=25)
                         tcatcaGCGCAGCCATACGTACGGCGTTACGTGCg           >  1:14046502/1‑35 (MQ=255)
                         tcatcaGCGCAGCCATACGTACGGCGTTACGTGCg           >  1:11455618/1‑35 (MQ=255)
                          tgccaGCTCAGCCATACGTACGGCGTTACGTGCGt          <  1:5215906/32‑1 (MQ=37)
                          catcaGCGCAGCCATACGTACGGCGTTACGTGCGt          >  1:20493229/1‑35 (MQ=255)
                          catcaGCGCAGCCATACGTACGGCGTTACGTGCGt          >  1:11145262/1‑35 (MQ=255)
                           atcaGCGCAGCCATACGTACGGCGTTACGTGCGTa         >  1:19436937/1‑35 (MQ=255)
                           atcaGCGCAGCCATACGTACGGCGTTACGTGCGTa         >  1:12385016/1‑35 (MQ=255)
                           acccgccCAGCCATACGTACGGCGTTACGTGCGTa         >  1:5911866‑M1/8‑35 (MQ=255)
                            ccccccCAGCCATACGTACGGCGTTACGTGCGTAt        >  1:15946502‑M1/7‑35 (MQ=255)
                            ccccccCAGCCATACGTACGGCGTTACGTGCGTAt        >  1:13720576‑M1/7‑35 (MQ=255)
                            ccccccCAGCCATACGTACGGCGTTACGTGCGTAt        >  1:17395078‑M1/7‑35 (MQ=255)
                             cagccCAGCCATACGTACGGCGTTACGTGCGTAtt       >  1:14382618‑M1/6‑35 (MQ=255)
                             caGCGCAGCCATACGTACGGCGTTACGTGCGTAtt       >  1:3313392/1‑35 (MQ=255)
                              aGCGCAGCCATACGTACGGCGTTACGTGCGTATTc      >  1:11660970/1‑35 (MQ=255)
                              aGCGCAGCCATACGTACGGCGTTACGTGCGTATTc      >  1:19993207/1‑35 (MQ=255)
                               gcgcAGCCATACGTACGGCGTTACGTGCGTATTcc     >  1:17924025/1‑35 (MQ=255)
                               gccCAGCCATACGTACGGCGTTACGTGCGTATTcc     >  1:2392042‑M1/4‑35 (MQ=255)
                               cccCAGCCATACGTACGGCGTTACGTGCGTATTcc     >  1:13202272‑M1/4‑35 (MQ=255)
                               cccCAGCCATACGTACGGCGTTACGTGCGTATTcc     >  1:3906031‑M1/4‑35 (MQ=255)
                                cgcAGCCATACGTACTGCGTTACGTGCGTATTCCa    >  1:18089606/1‑35 (MQ=255)
                                cgcAGCCATACGTACGGCGTTACGTGCGTATTCCa    >  1:11963295/1‑35 (MQ=255)
                                cgcAGCCATACGGACGGCGTTACGTGCGTATTCCa    >  1:5212246/1‑35 (MQ=255)
                                ccCAGCCATACGTACGGCGTTACGTGCGTATTCCa    >  1:17471403‑M1/3‑35 (MQ=255)
                                caCAGCCATACGTACGGCGTTACGTGCGTATTCCa    >  1:1676022‑M1/3‑35 (MQ=255)
                                 gcATCCATACGTACGGCGTTACGTGCGTATTCCAc   >  1:5696742/1‑35 (MQ=255)
                                 gcATCCATACGTACGGCGTTACGTGCGTATTCCAc   >  1:6745376/1‑35 (MQ=255)
                                 gcAGCCATACGTACGGCGTTACGTGCGTATTCCAc   >  1:16743589/1‑35 (MQ=255)
                                 gcAGCCATACGTACGGCGTTACGTGCGTATTCCAc   >  1:15117398/1‑35 (MQ=255)
                                 gcAGCCATACGTACGGCGTTACGTGCGTATTCCAc   >  1:15039244/1‑35 (MQ=255)
                                 cCAGCCATACGTACGGCGTTACGTGCGTATTCCAc   >  1:7099526‑M1/2‑35 (MQ=255)
                                 cCAGCCATACGTACGGCGTTACGTGCGTATTCCAc   >  1:13892638‑M1/2‑35 (MQ=255)
                                 cCAGCCATACGTACGGCGTTACGTGCGTATTCCAc   >  1:6757410‑M1/2‑35 (MQ=255)
                                  CAGCCATACGTACGGCGTTACGTGCGTATTCCACg  >  1:2863671‑M1/1‑35 (MQ=255)
                                  CAGCCATACGTACGGCGTTACGTGCGTATTCCACg  >  1:18348798‑M1/1‑35 (MQ=255)
                                  CAGCCATACGTACGGCGTTACGTGCGTATTCCACg  >  1:17515025‑M1/1‑35 (MQ=255)
                                  CAGCCATACGTACGGCGTTACGTGCGTATTCCACg  >  1:10560517‑M1/1‑35 (MQ=255)
                                  CAGCCATACGTACGGCGTTACGTGCGTATTCCACg  <  1:16919270‑M1/35‑1 (MQ=255)
                                  CAGCCATACGTACGGCGTTACGTGCGTATTCCACg  >  1:341619‑M1/1‑35 (MQ=255)
                                  CAGCCATACGTACGGCATTACGTGCGTATTCCACg  >  1:5108752‑M1/1‑35 (MQ=255)
                                  |                                  
GTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGTGCGTATTCCACG  >  REL606/2966008‑2966076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.