New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 351749069 (0.670)13 (0.130) 8/48 NT 14.7% coding (10/1743 nt) ggt gamma‑glutamyltranspeptidase periplasmic precursor
?REL606 = 4266659 82 (0.800)intergenic (‑355/‑38) acs/nrfA acetyl‑coenzyme A synthetase/nitrite reductase, formate‑dependent, cytochrome

Only 100 of 134 total aligned reads displayed.

AGAGCAGCAATGGCCACCCGGCGTAAAAACGTCGGTTTTATCATCGTTATTCTCCAGAGATTAAGGGGC  >  REL606/3517456‑3517524
                                  |                                  
agagcagCAATGGCCACCCGGCGTAAAAACGTCgg                                    >  1:3853620/1‑35 (MQ=255)
 gagcagCAATGGCCACCCGGCGTAAAAACGTCGGt                                   <  1:18499785/35‑1 (MQ=255)
  agcagcAATGGCCACCCGGCGTAAAAACGTCGGgg                                  >  1:18957227‑M1/1‑33 (MQ=255)
  agcagcAATGGCCACCCGGCGTAAAAACGTCGGgg                                  >  1:16473555‑M1/1‑33 (MQ=255)
   gcagcaATGGCCACCCTGCGTAAAAACGTCggggg                                 >  1:13492312/1‑32 (MQ=25)
   gcagcaATGGCCACCCGGCGTAAAAACGTCGGttt                                 <  1:5233999/35‑1 (MQ=255)
   gcagcaATGGCCACCCGGCGTAAAAACGTCGGttt                                 <  1:12089766/35‑1 (MQ=255)
   gcagcaATGGCCACCCGGCGTAAAAACGTCGGggt                                 >  1:2775594‑M1/1‑32 (MQ=255)
    cagcaATGGCCACCCGGCGTAAAAACGTCGGtttt                                <  1:10643838/35‑1 (MQ=255)
    cagcaATGGCCACCCGGCGTAAAAACGTCGGggtt                                >  1:11883899‑M1/1‑31 (MQ=255)
     agcaATGGCCACCCGGCGTAAAAACGTCGGggttt                               >  1:18678355‑M1/1‑30 (MQ=255)
     agcaATGGCCACCCGGCGTAAAAACGTCGGgggtt                               >  1:2412569‑M1/1‑30 (MQ=255)
     agcaATGGCCACCCGGCGTAAAAACGTCGGgggtt                               >  1:17697441‑M1/1‑30 (MQ=255)
     agcaATGGCCACCCGGCGTAAAAACGTCGGgggtt                               >  1:11918581‑M1/1‑30 (MQ=255)
     agcaATGGCCACCCGGCGTAAAAACGTCGGTTTTa                               <  1:2823868/35‑1 (MQ=255)
     agcaATGGCCACCCGGCGTAAAAACGTCGGTTTTa                               <  1:13815453/35‑1 (MQ=255)
     agcaATGGCCACCCGGCGTAAAAACGTCGGTTTTa                               <  1:16452762/35‑1 (MQ=255)
     agcaATGGCCACCCGGCGTAAAAACGTCGGTTTTa                               <  1:11252035/35‑1 (MQ=255)
     agcaATGGCCACCCGGCGTAAAAACGTCGGTTTTa                               <  1:6503427/35‑1 (MQ=255)
     agcaATGGCCACCCGGCGTAAAAACGTCGGTTTTa                               <  1:11012039/35‑1 (MQ=255)
     agcaATGGCCACCCAGCGTAAAAACGTCGGTTTTa                               <  1:15253793/35‑1 (MQ=255)
      gcaATGGCCACCCGGCGTAAAAACGTCGGgggttt                              >  1:18674071‑M1/1‑29 (MQ=255)
      gcaATGGCCACCCGGCGTAAAAACGTCGGTTTTat                              <  1:6584726/35‑1 (MQ=255)
       caATGGCCACCCGGCGTAAAAACGTCGGggttttt                             >  1:8605776‑M1/1‑28 (MQ=255)
       caATGGCCACCCGGCGTAAAAACGTCGGgggtttt                             >  1:12190113‑M1/1‑28 (MQ=255)
       caATGGCCACCCGGCGTAAAAACGTCGGgggtttt                             >  1:15700351‑M1/1‑28 (MQ=255)
       caATGGCCACCCGGCGTAAAAACGTCGGTTTTatc                             <  1:17386667/35‑1 (MQ=255)
       caATGGCCACCCGGCGTAAAAACGTCGGTTTTatc                             <  1:20226607/35‑1 (MQ=255)
       caATGGCCACCCGGCGTAAAAACGTCGGTTTTatc                             <  1:19537635/35‑1 (MQ=255)
        aaTGGCCACCCGGCGTAAAAACGTCGGTTTTatca                            <  1:10694183/35‑1 (MQ=255)
        aaTGGCCACCCGGCGTAAAAACGTCGGTTTTatca                            <  1:4204707/35‑1 (MQ=255)
        aaTGGCCACCCGGCGTAAAAACGTCGGTTTTatca                            <  1:19484064/35‑1 (MQ=255)
         aTGGCCACCCGGCGTAAAAACGTCGGTTTTatcat                           <  1:17372872/35‑1 (MQ=255)
         aTGGCCACCCGGCGTAAAAACGTCGGTTTTatcat                           <  1:5252180/35‑1 (MQ=255)
          tGGCCACCCGGCGTAAAAACGTCGGgttttttatt                          >  1:9170726‑M1/1‑25 (MQ=255)
          tGGCCACCCGGCGTAAAAACGTCGGggtttttttc                          >  1:2285395‑M1/1‑25 (MQ=255)
          tGGCCACCCGGCGTAAAAACGTCGGTTTTatcatc                          <  1:18238574/35‑1 (MQ=255)
           ggCCACCCGGCGTAAAAACGTCGGTTTTATCATCg                         <  1:505183/35‑1 (MQ=255)
           ggCCACCCGGCGTAAAAACGTCGGTTTTATAATCg                         <  1:4608327/35‑1 (MQ=255)
            gCCACCCGGCGTAAAAACGTCGGTTTTATCATCGt                        <  1:2371977/35‑1 (MQ=255)
            gCCACCCGGCGTAAAAACGTCGGTTTTATCATCGt                        <  1:12741465/35‑1 (MQ=255)
            gCCACCCGGCGTAAAAACGTCGGGTTTtttatctt                        >  1:17145434/1‑33 (MQ=21)
             cgaCCCGGCGTAAAAACGTCGGTTTTATCATCGtt                       <  1:97499/33‑1 (MQ=255)
             ccccccGGCGTAAAAACGTCGGTTTTATCATCGtt                       <  1:2693954/32‑1 (MQ=255)
             ccACCCGGCGTAAAAACGTCGGggttttttttgtt                       >  1:17312233‑M1/1‑22 (MQ=255)
             ccACCCGGCGTAAAAACGTCGGggtttttatcgtt                       >  1:4209508‑M1/1‑22 (MQ=255)
              cACCCGGCGTAAAAACGTCGGggttttcattgttt                      >  1:14343073‑M1/1‑21 (MQ=255)
              cACCCGGCGTAAAAACGTCGGTTTTATCATCGTTa                      <  1:10677512/35‑1 (MQ=255)
               aCCCGGCGTAAAAACGTCGGggtttttattgtttt                     >  1:4880736‑M1/1‑20 (MQ=255)
               aCCCGGCGTAAAAACGTCGGTTTTATCATCGTTAt                     <  1:8873621/35‑1 (MQ=255)
               aCCCGGCGTAAAAACGTCGGTTTTATCATCGTTAt                     <  1:5393108/35‑1 (MQ=255)
                cccGGCGTAAAAACGTCGGTTTTATCATCGTTAtt                    <  1:7473409/35‑1 (MQ=255)
                cccGGCGTAAAAACGTCGGTTTTATCATCGTTAtt                    <  1:14943924/35‑1 (MQ=255)
                 ccGGCGTAAAAACGTCGGTTTTATCATCGTTATtc                   <  1:10629523/35‑1 (MQ=255)
                 ccGGCGTAAAAACGTCGGTTTTATCATCGTTATtc                   <  1:12746534/35‑1 (MQ=255)
                 ccGGCGTAAAAACGTCGGTTTTATCATCGTTATtc                   <  1:3464271/35‑1 (MQ=255)
                 ccGGCGTAAAAACGTCGGTTTTATCATCGTTATtc                   <  1:17883726/35‑1 (MQ=255)
                 ccGGCGTAAAAACGTCGGTTTTATCATCGTTATtc                   <  1:16171584/35‑1 (MQ=255)
                  cGGCGTAAAAACGTCGGTTTTATCATCGTTATtct                  <  1:15808219/35‑1 (MQ=255)
                  cGGCGTAAAAACGTCGGTTTTATCATCGTTATtct                  <  1:14670238/35‑1 (MQ=255)
                  cGGCGTAAAAACGTCGGTTTTATCATCGTTATtct                  <  1:4946875/35‑1 (MQ=255)
                   ggCGTAAAAACGTCGGTTTTATCATCGTTATtctc                 <  1:19881954/35‑1 (MQ=255)
                    gCGTAAAAACGTCGGTTTTATCATCGTTATTCTcc                <  1:7746843/35‑1 (MQ=255)
                    gCGTAAAAACGTCGGTTTTATCATCGTTATTCTcc                <  1:3065431/35‑1 (MQ=255)
                    gCGTAAAAACGTCGGTTTTATCATCGTTATTCTcc                <  1:6038832/35‑1 (MQ=255)
                      gTAAAAACGTCGGTTTTATCATAGTTATTCTCCag              <  1:9495604/35‑1 (MQ=255)
                      gTAAAAACGTAGGTTTTATCATCGTTATTCTCCag              <  1:6069588/35‑1 (MQ=255)
                       tAAAAACGTCGGTTTTATCATCGTTATTCTCCaga             <  1:17455454/35‑1 (MQ=255)
                       tAAAAACGTCGGTTTTATCATCGTTATTCTCCaga             <  1:6902424/35‑1 (MQ=255)
                       tAAAAACGTCGGTTTTATCATCGTTATTCTCCaga             <  1:11678794/35‑1 (MQ=255)
                       tAAAAACGTCGGTTTTATCATCGTTATTCTCCaga             <  1:15234761/35‑1 (MQ=255)
                        aaaaaCGTCGGTTTTATCATCGTTATTCTCCagag            <  1:8931565/35‑1 (MQ=255)
                        aaaaaCGTCGGTTTTATCATCGTTATTCTCCagag            <  1:1926994/35‑1 (MQ=255)
                         aaaaCGTCGGTTTTATCATCGTTATTCTCCAgaga           <  1:4688512/35‑1 (MQ=255)
                          aaaCGTCGGTTTTATCATCGTTATTCTCCAGAGAt          <  1:10555837/35‑1 (MQ=255)
                          aaaCGTCGGTTTTATCATCGTTATTCTCCAGAGAt          <  1:16064477/35‑1 (MQ=255)
                           aaCGTCGGTTTTATCATCGTTATTCTCCAGAGAtt         <  1:17995210/35‑1 (MQ=255)
                           aaCGTCGGTTTTATCATCGTTATTCTCCAGAGAtt         <  1:14902338/35‑1 (MQ=255)
                           aaCGTAGGTTTTATCATCGTTATTCTCCAGAGAtt         <  1:4616969/35‑1 (MQ=255)
                            aCGTCGGTTTTATCATCGTTATTCTACAGAGATTa        <  1:1645159/35‑1 (MQ=255)
                             cGTCGGTTTTATCATCGTTATTCTCCAGAGATTaa       <  1:10011193/35‑1 (MQ=255)
                             cGTCGGTTTTATCATCGTTATTCTCCAGAGATTaa       <  1:9441595/35‑1 (MQ=255)
                               tCGGTTTTATCATCGTTATTCTCCAGAGATTAAgg     <  1:434334/35‑1 (MQ=255)
                               tCGGTTTTATCATCGTTATTCTCCAGAGATTAAgg     <  1:16089153/35‑1 (MQ=255)
                                cGGTTTTATCATCGTTATTCTCCAGAGATTAAggg    >  1:12623032/1‑35 (MQ=255)
                                cGGTTTTATCATCGTTATTCTCCAGAGATTAAggg    <  1:8121630/35‑1 (MQ=255)
                                cGGTTTTATCATCGTTATTCTCCAGAGATTAAggg    >  1:6941095/1‑35 (MQ=255)
                                cGGTTTTATCATCGTTATTCTCCAGAGATTAAggg    <  1:6026968/35‑1 (MQ=255)
                                 ggTTTTATCATCGTTATTCTCTAGAGATTAAgggg   >  1:1366029/1‑35 (MQ=255)
                                 ggTTTTATCATCGTTATTCTCCAGAGATTAAggtg   >  1:15024331/1‑33 (MQ=255)
                                 ggTTTTATCATCGTTATTCTCCAGAGATTAAgggg   >  1:11722170/1‑35 (MQ=255)
                                 ggTTTTATCATCGTTATTCTCCAGAGATTAAgggg   >  1:6548521/1‑35 (MQ=255)
                                  gTTTTATCATCGTTATTCTCCAGAGATTAAGGGGc  <  1:18048386/35‑1 (MQ=255)
                                  gTTTTATCATCGTTATTCTCCAGAGATTAAGGGGc  >  1:6785981/1‑35 (MQ=255)
                                  gTTTTATCATCGTTATTCTCCAGAGATTAAGGGGc  >  1:15011796/1‑35 (MQ=255)
                                  gTTTTATCATCGTTATTCTCCAGAGATTAAGGGGc  >  1:8507166/1‑35 (MQ=255)
                                  gTTTTATCATCGTTATTCTCCAGAGATTAAGGGGc  >  1:17254323/1‑35 (MQ=255)
                                  gTTTTATCATCGTTATTCTCCAGAGATTAAGGGGc  >  1:16267863/1‑35 (MQ=255)
                                  gTTTTATCATCGTTATTCTCCAGAGATTAAGGGGc  >  1:16268607/1‑35 (MQ=255)
                                  gTTTTATCATCGTTATTCTCCAGAGATTAAGGGGc  >  1:1106766/1‑35 (MQ=255)
                                  |                                  
AGAGCAGCAATGGCCACCCGGCGTAAAAACGTCGGTTTTATCATCGTTATTCTCCAGAGATTAAGGGGC  >  REL606/3517456‑3517524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.