New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1493949 =71 (0.690)13 (0.160) 5/38 NT 17.3% coding (533/1062 nt) yncE hypothetical protein
?REL606 = 1619524 68 (0.840)intergenic (‑133/+84) rem/hokD predicted protein/small toxic polypeptide

Only 100 of 170 total aligned reads displayed.

TGGGTCGTTGATGGCGAGAATATCAAACTGAAAACCGCCATCCAGAACACCGGTAAAATGAGTACCGGT  >  REL606/1493915‑1493983
                                  |                                  
tGGGTCGTTGATGGCGAGAATATCAAACTGAAAAc                                    >  1:20268847/1‑35 (MQ=255)
tGGGTCGTTGATGGCGAGAATATCAAACTGAAAAc                                    <  1:7693863/35‑1 (MQ=255)
tGGGTCGTTGATGGCGAGAATATCAAACTGAAAAc                                    >  1:20434090/1‑35 (MQ=255)
tGGGTCGTTGATGGCGAGAATATCAAACTGAAAAc                                    <  1:15864629/35‑1 (MQ=255)
tGGGTCGTTGATGGCGAGAATATCAAACTGAAAAc                                    <  1:6881855/35‑1 (MQ=255)
tGGGTCGTTGATGGCGAGAATATCAAACTGAAAAc                                    >  1:9758171/1‑35 (MQ=255)
gaacttcaaacgcgttgaaaataaaaacaaaaacc                                    <  1:295981‑M1/1‑1 (MQ=255)
 gggTCGTTGATGGCGAGAATATCAAACTGAAAAcc                                   <  1:14631059/35‑1 (MQ=255)
 gggTCGTTGATGGCGAGAATATCAAACTGAAAAcc                                   <  1:5093912/35‑1 (MQ=255)
 gggTCGTTGATGGCGAGAATATCAAACTGAAAAcc                                   <  1:17630101/35‑1 (MQ=255)
 gggTCGTTGATGGCGAGAATATCAAACTGAAAAcc                                   <  1:20208455/35‑1 (MQ=255)
 gggTCGTTGATGGCGAGAATATCAAACTGAAAAcc                                   >  1:10993376/1‑35 (MQ=255)
 aacttcaaacgcgttgaaaataaaaacaaaaaccc                                   >  1:15243980‑M1/34‑35 (MQ=255)
  ggTCGTTGATGGCGAGAATATCAAACTGAAAACCg                                  >  1:18726606/1‑35 (MQ=255)
  ggTCGTTGATGGCGAGAATATCAAACTGAAAACCg                                  >  1:6581907/1‑35 (MQ=255)
  ggTCGTTGATGGCGAGAATATCAAACTGAAAACCg                                  <  1:3543136/35‑1 (MQ=255)
  acttcaaacgcgttgaaaataaaaacaaaaacCCg                                  >  1:9412540‑M1/33‑35 (MQ=255)
  acttcaaacgcgttgaaaataaaaacaaaaacCCg                                  <  1:3653118‑M1/3‑1 (MQ=255)
  acttcaaacgcgttgaaaataaaaacaaaaacCCg                                  >  1:5885642‑M1/33‑35 (MQ=255)
   gTCGTTGATGGCGAGAATATCAAACTGAAAACCGc                                 <  1:20542991/35‑1 (MQ=255)
   gTCGTTGATGGCGAGAATATCAAACTGAAAACCGc                                 >  1:2668319/1‑35 (MQ=255)
   gTCGTTGATGGCGAGAATATCAAACTGAAAACCGc                                 <  1:6438501/35‑1 (MQ=255)
   gTCGTTGATGGCGAGAATATCAAACTGAAAACCGc                                 >  1:5340520/1‑35 (MQ=255)
   cttcaaacgcgttgaaaataaaaacaaanncCcgn                                 <  1:16437002‑M1/4‑2 (MQ=255)
   cttcaaacgcgttgaaaataaaaacaaaaacCCGc                                 <  1:6517045‑M1/4‑1 (MQ=255)
    ttcaaacgcgttgaaaataaaaacaaaaacCCGcc                                >  1:10061760‑M1/31‑35 (MQ=255)
    ttcaaacgcgttgaaaataaaaacaaaaacCCGcc                                <  1:6192710‑M1/5‑1 (MQ=255)
    tCGTTGATGTCGAGAATATCAAACTGAAAACCGcc                                >  1:12528441/1‑35 (MQ=255)
    tCGTTGATGGCGAGAATATCAAACTGAAAACCGcc                                >  1:8561028/1‑35 (MQ=255)
     cGTTGATGGCGAGAATATCAAACTGAAAACCGcaa                               <  1:4215084/35‑3 (MQ=255)
      gTTGATGGCGAGAATATCAAACTGAAAACCGCTAt                              >  1:7125384/1‑35 (MQ=255)
      gTTGATGGCGAGAATATCAAACTGAAAACCGCCAt                              >  1:7388947/1‑35 (MQ=255)
      gTTGATGGCGAGAATATCAAACTGAAAACCGCCAt                              >  1:17896197/1‑35 (MQ=255)
        tGATGGCGAGAATATCAAACTGAAAACCGCCATcc                            >  1:15741382/1‑35 (MQ=255)
        tGATGGCGAGAATATCAAACTGAAAACCGCCATcc                            >  1:10464245/1‑35 (MQ=255)
        tGATGGCGAGAATATCAAACTGAAAACCGCCATcc                            >  1:4538362/1‑35 (MQ=255)
        tGATGGCGAGAATATCAAACTGAAAACCGCCATcc                            >  1:4953541/1‑35 (MQ=255)
         gATGGCGAGAATATCAAACTGAAAACCGCCATCCa                           >  1:5012372/1‑35 (MQ=255)
          aTGGCGAGAATATCAAACTGAAAACCGCCATCCAg                          >  1:16707836/1‑35 (MQ=255)
            ggCGAGAATATCAAACTGAAAACCGCCATCCAGaa                        >  1:4768340/1‑35 (MQ=255)
            ggCGAGAATATCAAACTGAAAACCGCCATCCAGaa                        >  1:10855537/1‑35 (MQ=255)
            ggCGAGAATATCAAACTGAAAACCGCCATCCAGaa                        >  1:14145759/1‑35 (MQ=255)
            ggCGAGAATATCAAACTGAAAACCGCCATCCAGaa                        >  1:14311930/1‑35 (MQ=255)
             gCGAGAATATCAAACTGAAAACCGCCATCCAGAac                       >  1:11370824/1‑35 (MQ=255)
              cGAGAATATCAAACTGAAAACCGCCATCCAGAaca                      >  1:2100372/1‑35 (MQ=255)
              cGAGAATATCAAACTGAAAACCGCCATCCAGAaca                      >  1:4407973/1‑35 (MQ=255)
              cGAGAATATCAAACTGAAAACCGCCATCCAGAaca                      >  1:16073811/1‑35 (MQ=255)
               gagaATATCAAACTGAAAACCGCCATCCAGAacac                     >  1:19563518/1‑35 (MQ=255)
                agaATATCAAACTGAAAACCGCCATCCAGAACAcc                    >  1:2181973/1‑35 (MQ=255)
                agaATATCAAACTGAAAACCGCCATCCAGAACAcc                    >  1:5587699/1‑35 (MQ=255)
                 gaATATCAAACTGAAAACCGCCATCCAGAACACCg                   >  1:10559906/1‑35 (MQ=255)
                  aaTATCAAACTGAAAACCGCCATCCAGAACACCgg                  >  1:10238077/1‑35 (MQ=255)
                  aaTATAAAACTAAAACCCGCCATCCAGAACACCgg                  <  1:17188403/35‑1 (MQ=21)
                   atatCAAACTGAAAACCGCCATCCAGAACACCGGt                 >  1:3558711/1‑35 (MQ=255)
                   atatCAAACTGAAAACCGCCATCCAGAACACCGGt                 >  1:8931280/1‑35 (MQ=255)
                   atatCAAACTGAAAACCGCCATCCAGAACACCGGt                 >  1:936443/1‑35 (MQ=255)
                    tatCAAACTGAAAACCGCCATCCAGAACACCGTTa                >  1:1751487/1‑35 (MQ=255)
                    tatCAAACTGAAAACCGCCATCCAGAACACCGGTa                >  1:19236138/1‑35 (MQ=255)
                    tatCAAACTGAAAACCGCCATCCAGAACACCGGTa                >  1:17010981/1‑35 (MQ=255)
                    tatAAAACTAAACCCCGCCATCCAGAACACCGGTa                <  1:13307093/35‑1 (MQ=16)
                     atCAAACTGAAAACCGCCATCCAGAACACCGGTaa               >  1:132633/1‑35 (MQ=255)
                     aacaaacaaaaacCCGCCATCCAGAACACCGGTaa               >  1:7700613‑M1/14‑35 (MQ=255)
                     aaaaaacaaaaacCCGCCATCCAGAACACCGGTaa               >  1:13756006‑M1/14‑35 (MQ=255)
                      tCAAACTGAAAACCGCCATCCAGTACACCGGTaaa              >  1:19589281/1‑35 (MQ=255)
                      tCAAACTGAAAACCGCCATCCAGAACACCGGTaaa              >  1:4077522/1‑35 (MQ=255)
                       cAAACTGAAAACCGCCATCCAGAACACCGGTaaaa             >  1:12896320/1‑35 (MQ=255)
                       cAAACTGAAAACCGCCATCCAGAACACCGGTaaaa             >  1:18243718/1‑35 (MQ=255)
                       cAAACTGAAAACCGCCATCCAGAACACCGGTaaaa             >  1:18138211/1‑35 (MQ=255)
                         naCTGAAAACCGCCATCCAGAACACCGGTAAAANg           >  1:19418106/2‑35 (MQ=255)
                         aaCTGAAAACCGCCATCCAGAACACCGGTAAAATg           >  1:14249383/1‑35 (MQ=255)
                         aaCTGAAAACCGCCATCCAGAACACCGGTAAAATg           >  1:8134649/1‑35 (MQ=255)
                          actaaaacCCGCCATCCAGAACACCGGTAAAATGa          >  1:14411600‑M1/9‑35 (MQ=255)
                          aCTTAAAACCTCCATCCAGAACACCGGTAAAATGa          >  1:19943886/1‑35 (MQ=37)
                          aCTGAAAACCGCCATCCAGAACACCTGTAAAATGa          >  1:7208942/1‑35 (MQ=255)
                          aCTGAAAACCGCCATCCAGAACACCGGTAAAATGa          >  1:9042279/1‑35 (MQ=255)
                          aCTGAAAACCGCCATCCAGAACACCGGTAAAATGa          >  1:4017886/1‑35 (MQ=255)
                          aCTGAAAACCGCCATCCAGAACACCGGTAAAATGa          >  1:3076399/1‑35 (MQ=255)
                            tGAAAACCGCCATCCAGAACACCGGTAAAATGAGt        >  1:19355587/1‑35 (MQ=255)
                            aaaaacCCGCCATCCAGAACACCGGTAAAATGAGt        >  1:270466‑M1/7‑35 (MQ=255)
                             gAAAACCGCCATCCAGAACACCGGTAAAATGAGTa       >  1:16458809/1‑35 (MQ=255)
                             gAAAACCGCCATCCAGAACACCGGTAAAATGAGTa       >  1:12739053/1‑35 (MQ=255)
                             gAAAACCGCCATCCAGAACACCGGTAAAATGAGTa       >  1:12732050/1‑35 (MQ=255)
                             aaaacCCGCCATCCAGCACACCGGTAAAATGAGTa       >  1:9579456‑M1/6‑35 (MQ=255)
                              aaccCCGCCATCCAGAACACCGGTAAAATGAGTAc      >  1:17586912‑M1/5‑35 (MQ=255)
                              aaaaCCGCCATCCAGAACACCGGTAAAATGAGTAc      >  1:9686251/1‑35 (MQ=255)
                              aaaaCCGCCATCCAGAACACCGGTAAAATGAGTAc      >  1:19707412/1‑35 (MQ=255)
                              aaaaCCGCCATCCAGAACACCGGTAAAATGAGTAc      >  1:18655819/1‑35 (MQ=255)
                               aaaCCGCCATCCAGAACACCGGTAAAATGAGTAcc     >  1:17998976/1‑35 (MQ=255)
                               aaaCCGCCATCCAGAACACCGGTAAAATGAGTAcc     >  1:9608015/1‑35 (MQ=255)
                                ccCCGCCATCCAGAACACCGGTAAAATGAGTACCg    >  1:12091203‑M1/3‑35 (MQ=255)
                                ccCCGCCATCCAGAACAACGGTAAAATGAGTACCg    >  1:935245‑M1/3‑35 (MQ=255)
                                aaCCGCCATCCAGAACACCGGTAAAATGAGTACCg    >  1:13541951/1‑35 (MQ=255)
                                aaCCGCCATCCAGAACACCGGTAAAATGAGTACCg    >  1:9067064/1‑35 (MQ=255)
                                 cCCGCCATCCAGAACACCGGTAAAATGAGTACCgg   >  1:12106453‑M1/2‑35 (MQ=255)
                                 aCCGCCATCCAGAACACTGGTAAAATGAGTACCgg   >  1:17094013/1‑35 (MQ=255)
                                 aCCGCCATCCAGAACACCGGTAAAATGAGTACCgg   >  1:346398/1‑35 (MQ=255)
                                 aCCGCCATCCAGAACACCGGTAAAATGAGTACCgg   >  1:1810722/1‑35 (MQ=255)
                                 aCCGCCATCCAGAACACCGGTAAAATGAGTACCgg   >  1:11163991/1‑35 (MQ=255)
                                  CCGCCATCCAGAACACCGGTAAAATGAGTACCGGt  <  1:11751545‑M1/35‑1 (MQ=255)
                                  CCGCCATCCAGAACACCGGTAAAATGAGTACCGGt  <  1:10034769‑M1/35‑1 (MQ=255)
                                  |                                  
TGGGTCGTTGATGGCGAGAATATCAAACTGAAAACCGCCATCCAGAACACCGGTAAAATGAGTACCGGT  >  REL606/1493915‑1493983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.