New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3698836 =NA (NA)15 (0.210) 4/34 NT 13.9% coding (1960/4134 nt) rhsA rhsA element core protein RshA
?REL606 3882308 = 131 (1.270)coding (110/816 nt) atpB F0F1 ATP synthase subunit A

Only 100 of 104 total aligned reads displayed.

TCAGCCGGTCAAGTACATCGTAACGGAAGGTGGTgtggctg‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3698869‑3698836
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGCTGGGGGGTTTTGTGG  >  REL606/3882308‑3882327
                                                      
gCAGCCGGTCAAGTACATCGTAACGGAAGGTGGTG                     <  1:17643360/34‑1
cCAGCCGGTCAAGTACATCGTAACGGAAGGTGGTG                     <  1:9770954/34‑1
cCAGCCGGTCAAGTACATCGTAACGGAAGGTGGTG                     <  1:8733245/34‑1
cCAGCCGGTCAAGTACATCGTAACGGAAGGTGGTG                     <  1:17425210/34‑1
cCAGCCGGTCAAGTACATCGTAACGGAAGGTGGTG                     <  1:11033956/34‑1
cCAGCCGGTCAAGTACATCGTAACGGAAGGTGGTG                     <  1:8992625/34‑1
cCAGCCGGTCAAGTACATCGTAACGGAAGGTGGTG                     <  1:6258625/34‑1
TCAGCCGGTCAAGTACATCGTAACGGAAGGGGGTG                     >  1:19181596/1‑35
TCAGACGGTCAAGTACATCGTAACGGAAGGTGGTG                     <  1:15541276/35‑1
 CAGCCGGTCAAGTACATCGTAACGGAAGGTTGTGT                    >  1:18023676/1‑35
 CAGCCGGTCAAGTACATCGTAACGGAAGGTGGTGT                    >  1:4607271/1‑35
 CAGCCGGTCAAGTACATCGTAACGGAAGGTGGTGT                    >  1:12917836/1‑35
 CAGCCGGTCAAGTACATCGTAACGGAAGGTGGTGT                    <  1:4488272/35‑1
 CAGCCGGTCAAGTACATCGTAACGGAAGGTGGTGT                    <  1:7613832/35‑1
 CAGCCGGTCAAGTACATCGTAACGGAAGGTGGTGT                    <  1:18358928/35‑1
 CAGCCGGTCAAGTACATCGTAACGGAAGGTGGTGT                    <  1:7173737/35‑1
 CAGCCGGTCAAGTACATCGTAACGGAAGGTGGTGT                    <  1:3067937/35‑1
 CAGCCGGTCAAGTACATCGTAACGGAAGGGGGTGg                    >  1:18834072/1‑34
 CAGCCGGTCAAGTACATCGTAACGGAAGGGGGTGT                    >  1:15022020/1‑35
 CAGCCGGTCAAGTACATCGTAACCGAAGGTGGTGT                    >  1:956072/1‑35
  AGCCGGTCAAGTACATCGTAACGGAAGGTGGTGTG                   <  1:15597890/35‑1
  AGCCGGTCAAGTACATCGTAACGGAAGGTGGTGTG                   <  1:7239106/35‑1
  AGCCGGTCAAGTACATCGTAACGGAAGGTGGTGTG                   <  1:7809977/35‑1
  AGCCGGTCAAGTACATCGTAACGGAAGGTGGTGTG                   >  1:17373553/1‑35
  AGCCGGTCAAGTACATCGTAACGGAAGGTGGTGTG                   <  1:14673810/35‑1
  AGCCGGTCAAGTACATCGTAACGGAAGGTGGTGTG                   >  1:4732078/1‑35
  AGCCGGTCAAGTACATCGTAACGGAAGGTGGTGTG                   >  1:12060933/1‑35
  AGCCGGTCAAGTACATCGTAACGGAAGGTGGTGTG                   >  1:11374433/1‑35
  AGCCGGTCAAGTACATCGTAACGGAAGGTGGTGTG                   <  1:10652316/35‑1
  AGCCGGTCAAGTACATCGTAACGGAAGGGGGTGTG                   >  1:3982990/1‑35
   GCCGGTCAAGTACATCGTAACGGAAGGTGGTGTGG                  >  1:5035960/1‑35
   GCCGGTCAAGTACATCGTAACGGAAGGTGGTGTGG                  <  1:3489604/35‑1
   GCCGGTCAAGTACATCGTAACGGAAGGTGGTGTGG                  <  1:20371721/35‑1
   GCCGGTCAAGTACATCGTAACGGAAGGTGGTGTGG                  >  1:8117088/1‑35
   GCCGGTCAAGTACATCGTAACGGAAGGTGGTGTGG                  <  1:8004783/35‑1
   GCCGGTCAAGTACATCGTAACGGAAGGTGGTGTGG                  <  1:10123171/35‑1
   GCCGGTCAAGTACATCGAAACGGAAGGTGGTGTGG                  >  1:1146084/1‑35
    ctGGTCAAGTACATCGTAACGGAAGGTGGTGTGGC                 <  1:2475329/33‑1
    CCGGTCAAGTACATCGTAACGGAAGGTGGTGTGGC                 <  1:20414773/35‑1
    CCGGTCAAGTACATCGTAACGGAAGGTGGTGTGGC                 >  1:17254024/1‑35
    CCGGTCAAGTACATCGTAACGGAAGGTGGTGTGGC                 <  1:15931506/35‑1
    CCGGTCAAGTACATCGTAACGGAAGGTGGTGTGGC                 <  1:15668116/35‑1
    CCGGTCAAGTACATCGTAACGGAAGGTGGTGTGGC                 >  1:4467773/1‑35
    CCGGTCAAGTACATCGTAACGGAAGGTGGTGTGGC                 <  1:11262100/35‑1
    CCGGTCAAGTACATCGTAACGGAAGGTGGTGTGGC                 <  1:10621299/35‑1
    CCGGTCAAGTACATCGTAACGGAAGGTGGTGTGGC                 <  1:5612641/35‑1
    CCGGTCAAGTACATCGTAACGGAAGGTGGGGTGGg                 >  1:10645583/1‑34
     atcTCAAGTACATCGTAACGGAAGGTGGTGTGGCT                <  1:16312329/32‑1
     CGGTCAAGTACATCGTAACGGAAGGTGGTGTGGCT                <  1:255831/35‑1
     CGGTCAAGTACATCGTAACGGAAGGTGGTGTGGCT                >  1:15784179/1‑35
     CGGTCAAGTACATCGTAACGGAAGGTGGTGTGGCT                >  1:4756063/1‑35
     CGGTCAAGTACATCGTAACGGAAGGTGGTGTGGCT                >  1:9526722/1‑35
     CGGTCAAGTACATCGTAACGGAAGGGGGTGTGGCT                >  1:826339/1‑35
      GGTCAAGTACATCGTAACGGAAGGTGGTGTGGCTG               >  1:5393445/1‑35
      GGTCAAGTACATCGTAACGGAAGGTGGTGTGGCTG               <  1:3090526/35‑1
      GGTCAAGTACATCGTAACGGAAGGTGGTGTGGCTG               >  1:6300351/1‑35
      GGTCAAGTACATCGTAACGGAAGGTGGTGTGGCTG               <  1:3664439/35‑1
      GGTCAAGTACATCGTAACGGAAGGTGGTGTGGCTG               <  1:7123723/35‑1
      GGTCAAGTACATCGTAACGGAAGGTGGTGTGGCTG               <  1:19219862/35‑1
      GGTCAAGTACATCGTAACGGAAGGTGGTGTGGCTG               <  1:17356512/35‑1
      GGTCAAGTACATCGTAACGGAAGGTGGTGTGGCTG               >  1:9312470/1‑35
      GGTCAAGTACATCGTAACGGAAGGTGGTGTGGCTG               <  1:8572724/35‑1
      GGTCAAGTACATCGTAACGGAAGGTGGTGTGGCTG               >  1:13374338/1‑35
      GGTCAAGTACATCGTAACGGAAGGTGGGGTGGCTG               >  1:17107957/1‑35
      GGTCAAGTACATCGTAACGGAAGGTGGGGTGGCTG               >  1:13974524/1‑35
      GGTCAAGTACATCGTAAAGGAAGGTGGTGTGGCTG               <  1:7142257/35‑1
       GTCAAGTACATCGTAACGGAAGGTGGTGTGGCTGG              >  1:9877530/1‑35
       GTCAAGTACATCGTAACGGAAGGTGGTGTGGCTGG              >  1:1226066/1‑35
       GTCAAGTACATCGTAACGGAAGGTGGTGTGGCTGG              >  1:4593393/1‑35
       GTCAAGTACATCGTAACGGAAGGTGGTGTGGCTGG              >  1:1472270/1‑35
       GTCAAGTACATCGTAACGGAAGGTGGTGTGGCTGG              >  1:8285691/1‑35
       GTCAAGTACATCGTAACGGAAGGTGGTGTGGCTGG              >  1:6372252/1‑35
       GTCAAGTACATCGTAACGGAAGGTGGTGGGGCTGG              >  1:10602717/1‑35
       GTCAAGTACATCGTAACGGAAGGGGGTGTGGCTGG              >  1:7623930/1‑35
        TCAAGTACATCGTAACGGAAGGTGGTGTGGCTGGG             >  1:10045598/1‑35
        TCAAGTACATCGTAACGGAAGGTGGTGTGGCTGGG             >  1:16220640/1‑35
        TCAAGTACATCGTAACGGAAGGTGGTGTGGCTGGG             >  1:16539336/1‑35
        TCAAGTACATCGTAACGGAAGGTGGTGTGGCTGGG             >  1:18230103/1‑35
        TCAAGTACATCGTAACGGAAGGTGGTGTGGCTGGG             >  1:2177594/1‑35
        TCAAGTACATCGTAACGGAAGGAGGTGTGGCTGGG             >  1:4309417/1‑35
         CAAGTACATCTTAACGGAAGGTGGTGTGGCTGGGG            >  1:11205511/1‑35
         CAAGTACATCGTAACGGAAGGTGGTGTGGCTGGag            >  1:17273857/1‑33
         CAAGTACATCGTAACGGAAGGTGGTGTGGCTGGGc            >  1:9159203/1‑34
         CAAGTACATCGTAACGGAAGGTGGTGTGGCTGGGG            >  1:20253491/1‑35
          nAGTACATCGTAACGGAAGGTGGTGTGGCTGGGGG           >  1:7142801/2‑35
              ACATCGTAACGGAAGGTGGTGTGGCTGGGGGGTTT       >  1:1703037/1‑35
               CATCGTAACGGAAGGTGGTGTGGCTGGGGGGTTTT      >  1:10527128/1‑35
                ATCGTAACGGAAGGTGGTGTGGCTGGGGGTTTTTc     >  1:15450486/1‑34
                ATCGTAACGGAAGGTGGTGTGGCTGGGGGGTTcca     >  1:296492/1‑32
                ATCGTAACGGAAGGTGGTGTGGCTGGGGGGTTTgc     >  1:2770516/1‑33
                ATCGTAACGGAAGGTGGTGTGGCTGGGGGGTTTcc     >  1:15650114/1‑33
                ATCGTAACGGAAGGTGGTGTGGCTGGGGGGTTTTt     >  1:11621332/1‑34
                 TCGTAACGGAAGGTGGTGTGGCTGGGGGGTTTcct    >  1:14786191/1‑32
                 TCGTAACGGAAGGTGGTGTGGCTGGGGGGTTTccc    >  1:18390624/1‑32
                  CGTAACGGAAGGTGGTGTGGCTGGGGGGTTTTttt   >  1:8423526/1‑32
                  CGTAACGGAAGGTGGTGTGGCTGGGGGGTTTTctc   >  1:1875325/1‑32
                  CGTAACGGAAGGTGGTGTGGCTGGGGGGTTTTctc   >  1:5078033/1‑32
                  CGTAACGGAAGGTGGTGTGGCTGGGGGGTTTTCTG   >  1:3559942/1‑35
                   GTAACGGAAGGTGGTGTGGCTGGGGGGTTTTCTGG  >  1:14750057/1‑35
                   GTAACGGAAGGTGGTGTGGCTGGGGGGTTTTCTGG  >  1:12876851/1‑35
                                                      
TCAGCCGGTCAAGTACATCGTAACGGAAGGTGGTgtggctg‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3698869‑3698836
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGCTGGGGGGTTTTGTGG  >  REL606/3882308‑3882327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.