Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,621,349 | C→A | 5.8% | intergenic (+50/+35) | trpR → / ← yjjX | Trp operon repressor/NTPase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,621,349 | 0 | C→A | 5.8% | 4.7 ‑0.3 ‑0.3 | 129 | intergenic (+50/+35) | trpR/yjjX | Trp operon repressor/NTPase |
Reads supporting (aligned to +/- strand): new base (3/5): ref base (57/64): total (60/69) | ||||||||||
Fisher's exact test strand distribution p-value = 7.23e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.67e-01 |
Only 100 of 135 total aligned reads displayed.
AAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTC > REL606/4621315‑4621383 | aaGACGCGGCAGCGTCGCATCAGGCATCGTGCAcc > 1:14309323/1‑35 (MQ=38) aGACGCGGCAGCGTCGCATCAGGCATCGTGCACCg < 1:13450511/35‑1 (MQ=40) aGACGCGGCAGCGTCGCATCAGGCATCGTGCACCg < 1:14349443/35‑1 (MQ=40) aGACGCGGCAGCGTCGCATCAGGCATCGTGCACCg < 1:18434816/35‑1 (MQ=40) cgcgGCAGCGTCGCATCAGGCATCGTGCACCGAAt < 1:11322415/35‑1 (MQ=255) cgcgGCAGCGTCGCATCAGGCATCGTGCACAGAAt < 1:14774207/35‑1 (MQ=255) cgGCAGCGGCGCATCAGGCATCGTGCACCGAATGc > 1:16902292/1‑35 (MQ=255) ggCAGCGTCGCATCAGGCATCGTGCACCGAGTGcc < 1:19171331/35‑1 (MQ=255) ggCAGCGTCGCATCAGGCATCGTGCACCGAATGcc > 1:7336409/1‑35 (MQ=255) ggCAGCGTCGCATCAGGCATCGTGCACCGAATGcc < 1:11977620/35‑1 (MQ=255) ggCAGCGTCGCATCAGGCATCGTGCACCGAATGcc < 1:12239136/35‑1 (MQ=255) gCAGCGTCGCATCAGGCATCGTGCACCGAATGcct > 1:16040442/1‑34 (MQ=255) gCAGCGTCGCATCAGGCATCGTGCACCGAATGCCg > 1:17234061/1‑35 (MQ=255) gCAGCGTCGCATCAGGCATCGTGCACCGAATGCCg > 1:7843335/1‑35 (MQ=255) cAGCGTCGCATCAGGCATCGTGCACCGAATGCCgg > 1:16611338/1‑35 (MQ=40) cAGCGTCGCATCAGGCATCGTGCACCGAATGCCgg < 1:11100704/35‑1 (MQ=40) cAGCGTCGCATCAGGCATCGTGCACCGAATGCCgg < 1:1090875/35‑1 (MQ=40) aGCGTCGCATCAGGCATCGTGCACCGAATGCCGGa > 1:2856124/1‑35 (MQ=38) aGCGTCGCATCAGGCATCGTGCACCGAATGCCGGa > 1:8987437/1‑35 (MQ=38) gCGTCGCATCAGGCATCGTGCACCGAATGCCGGAt > 1:20173754/1‑35 (MQ=38) gCGTCGCATCAGGCATCGTGCACCGAATGCCGGAt > 1:17546447/1‑35 (MQ=38) gCGTCGCATCAGGCATCGTGCACCGAATGCCGGAt < 1:16610985/35‑1 (MQ=38) gCGTCGCATCAGGCATCGTGCACCGAATGCCGGAt < 1:4971849/35‑1 (MQ=38) cGTCGCATCAGGCATCGTGCACCGAATGCCGGATg > 1:7433888/1‑35 (MQ=38) cGTCGCATCAGGCATCGTGCACCGAATGCCGGATg < 1:7203996/35‑1 (MQ=38) cGTCGCATCAGGCATCGTGCACCGAATGCCGGATg > 1:19845519/1‑35 (MQ=38) gTCGCATCGGGCATCGTGTACCGAATGCCGGATgc < 1:9151616/35‑1 (MQ=14) gTCGCATCAGGCATCGTGCACCGAATGCCGGATgc > 1:14899749/1‑35 (MQ=38) gTCGCATCAGGCATCGTGCACCGAATGCCGGATgc < 1:17564424/35‑1 (MQ=38) gTCGCATCAGGCATCGTGCACCGAATGCCGGATgc > 1:4434978/1‑35 (MQ=38) gTCGCATCAGGCATCGTGCACCGAATGCCGGATgc < 1:437018/35‑1 (MQ=38) gTCGCATCAGGCATCGTGCACCGAATGCCGGATgc < 1:2485931/35‑1 (MQ=38) tcccATCAGGCATCGTGCACCGAATGCCGGATgcg < 1:20353723/32‑1 (MQ=255) tagCATCAGGCATCGTGCACCGAATGCCGGATgcg < 1:12014294/33‑1 (MQ=255) tCGCATCAGGCATCGTGCACCGAATGCCGGATgcg < 1:18800519/35‑1 (MQ=38) tCGCATCAGGCATCGTGCACCGAATGCCGGATgcg > 1:1454876/1‑35 (MQ=38) tCGCATCAGGCATCGTGCACCGAATGCCGGATgcg > 1:4514888/1‑35 (MQ=38) tCGCATCAGGCATCGTGCACCGAATGCCGGATgcg < 1:12579413/35‑1 (MQ=38) cGCATCAGGCATCGTGCACCGAATGCCGGATgcgg > 1:5073236/1‑35 (MQ=38) cGCATCAGGCATCGTGCACCGAATGCCGGATgcgg < 1:288078/35‑1 (MQ=38) cGCATCAGGCATCGTGCACCGAATGCCGGATgcgg > 1:7573529/1‑35 (MQ=38) cGCATCAGGCATCGTGCACCGAATGCCGGATgcgg > 1:10080971/1‑35 (MQ=38) cGCATCAGGCATCGTGCACCGAATGCCGGATgcgc > 1:15148035/1‑34 (MQ=38) gCATCAGGCATTGTGCACAGAACGGCGGGGgcggg > 1:19002163/1‑34 (MQ=17) gCATCAGGCATCGTGCACCGAATGCCGGATgcggc < 1:19247952/35‑1 (MQ=38) cATCAGGCATCGTGCACCGAATGCCGGATgcggcg > 1:13734076/1‑35 (MQ=38) cATCAGGCATCGTGCACCGAATGCCGGATgcggcg > 1:360047/1‑35 (MQ=38) cATCAGGCATCGTGCACCGAATGCCGGATgcggcg < 1:17657130/35‑1 (MQ=38) cATCAGGCATCGTGCACCGAATGCCGGATgcggcg > 1:12479968/1‑35 (MQ=38) cATCAGGCATCGTGCACCGAATGCCGGATgcggcg < 1:5002437/35‑1 (MQ=38) aTCAGGCATCGTGCACCGAATGCCGGATGTGGCGt < 1:6984531/35‑1 (MQ=255) aTCAGGCATCGTGCACCGAATGCCGGATGCGGCGt < 1:13398/35‑1 (MQ=38) tCAGGCATCGTGCACCGAATGCCGGATGCGGCGTg > 1:4012187/1‑35 (MQ=38) tCAGGCATCGTGCACCGAATGCCGGATGCGGCGTg > 1:2826233/1‑35 (MQ=38) tCAGGCATCGTGCACCGAATGCCGGATGCGGCGTg > 1:14036900/1‑35 (MQ=38) tCAGGCATCGTGCACCGAATGCCGGATGCGGCGTg < 1:11346616/35‑1 (MQ=38) tCAGGCATCGTGCACAGAATGCCGGATGCGGCGTg < 1:2158021/35‑1 (MQ=255) cAGGCATCGTGCACCGAATGCCGGATGCGGCGTGa > 1:12078681/1‑35 (MQ=38) cAGGCATCGTGCACCGAATGCCGGATGCGGCGTGa < 1:14224993/35‑1 (MQ=38) cAGGCATCGTGCACCGAATGCCGGATGCGGCGTGa < 1:6981712/35‑1 (MQ=38) aGGCATCGTGCACCGAATGCCGGATGCGGCGTGaa < 1:11296337/35‑1 (MQ=38) aGGCATCGTGCACCGAATGCCGGATGCGGCGTGaa > 1:291775/1‑35 (MQ=38) aGGCATCGTGCACCGAATGCCGGATGCGGCGTGaa < 1:7976640/35‑1 (MQ=38) ggCATCGTGCACCGAATGCCGGATGCGGCGTGAAc < 1:10476558/35‑1 (MQ=38) ggCATCGTGCACCGAATGCCGGATGCGGCGTGAAc > 1:4068562/1‑35 (MQ=38) ggCATCGTGCACCGAATGCCGGATGCGGCGTGAAc < 1:4737277/35‑1 (MQ=38) gCATCGTGCACCGAATGCCGGATGCGGCGTGAACg < 1:6203471/35‑1 (MQ=38) gCATCGTGCACCGAATGCCGGATGCGGCGTGAACg < 1:12844720/35‑1 (MQ=38) gCATCGTGCACCGAATGCCGGATGCGGCGTGAACg < 1:14737174/35‑1 (MQ=38) cATCGTGCACCGAATGCCGTATGCGGCGTGAACGc > 1:10959033/1‑35 (MQ=255) cATCGTGCACCGAATGCCGGATGCGGGGGGaaagg > 1:1008115/1‑32 (MQ=14) cATCGTGCACCGAATGCCGGATGCGGCGTGAACGc < 1:12010655/35‑1 (MQ=38) cATCGTGCACCGAATGCCGGATGCGGCGTGAACGc < 1:15174901/35‑1 (MQ=38) cATCGTGCACCGAATGCCGGATGCGGCGTGAACGc < 1:7530173/35‑1 (MQ=38) aTCGTGCACCGAATGCCGGATGCGGGGTGAACGcc > 1:14512971/1‑35 (MQ=255) tCGTGCACCGAATGCCGGATGCGGCGTGAACGCCt > 1:15304508/1‑35 (MQ=38) tCGTGCACCGAATGCCGGATGCGGCGTGAACGCCt < 1:9178408/35‑1 (MQ=38) tCGTGCACCGAATGCCGGATGCGGCGTGAACGCCt > 1:18831084/1‑35 (MQ=38) tCGTGCACCGAATACCGGATGCGGCGTGAACGCCt < 1:19472937/35‑1 (MQ=255) cGTGCACCGAATGCCGGATGCGGCGTGAACGCCtt > 1:7263301/1‑35 (MQ=38) cGTGCACCGAATGCCGGATGCGGCGTGAACGCCtt < 1:7992646/35‑1 (MQ=38) cGTGCACCGAATGCCGGATGCGGCGTGAACGCCtt > 1:14502105/1‑35 (MQ=38) gTGCACCGAATGCCGGATGCGGCGTGAACGCCTTa < 1:10933221/35‑1 (MQ=38) tGCACCGAATGCCGGATGCGGCGTGAACGCCTTAt < 1:9775381/35‑1 (MQ=38) tGCACCGAATGCCGGATGCGGCGTGAACGCCTTAt > 1:6281174/1‑35 (MQ=38) ggaCCGAATGCCGGATGCGGCGTGAACGCCTTATc < 1:1699759/33‑1 (MQ=255) gCACCGAATGCCGGATGCGGCGTGAACGCCTTATc < 1:5928076/35‑1 (MQ=38) gCACCGAATGCCGGATGCGGCGTGAACGCCTTATc < 1:5515440/35‑1 (MQ=38) gCACCGAATGCCGGATGCGGCGTGAACGCCTTATc < 1:2984078/35‑1 (MQ=38) gCACCGAATGCCGGATGCGGCGTGAACGCCTTATc > 1:16802147/1‑35 (MQ=38) gCACAGAATGCCGGATGCGGCGTGAACGCCTTATc > 1:15905455/1‑35 (MQ=255) cACCGAATGCCGGATGCGGCGTGAACGCCTTATcc < 1:11505308/35‑1 (MQ=38) cACCGAATGCCGGATGCGGCGTGAACGCCTTATcc < 1:10930340/35‑1 (MQ=38) cACCGAATGCCGGATGCGGCGTGAACGCCTTATcc < 1:13915361/35‑1 (MQ=38) cACCGAATGCCGGATGCGGCGTGAACGCCTTATcc < 1:9556542/35‑1 (MQ=38) cACAGAATGCCGGATGCGGCGTGAACGCCTTATcc < 1:583079/35‑1 (MQ=255) aCCGAATGCCGGATGCGGCGTGAACGCCTTATCCg < 1:7016371/35‑1 (MQ=38) aCCGAATGCCGGATGCGGCGTGAACGCCTTATCCg > 1:6130048/1‑35 (MQ=38) aCCGAATGCCGGATGCGGCGTGAACGCCTTATCCg > 1:4834435/1‑35 (MQ=38) cGAATGCCGGATGCGGCGTGAACGCCTTATCCGTc > 1:13286470/1‑35 (MQ=40) | AAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTC > REL606/4621315‑4621383 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |