New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2933125 =46 (0.450)11 (0.140) 5/38 NT 16.9% coding (1669/2874 nt) gcvP glycine dehydrogenase
?REL606 = 3606341 72 (0.890)coding (1517/2076 nt) yhjG predicted outer membrane biogenesis protein

Only 100 of 178 total aligned reads displayed.

GCTACCGCGTAGTTCCGCGTCACCGTTCATTTCCCCCAGCGTCTTCTGCATCAGTTCCACATCGGGCAT  >  REL606/3606307‑3606375
                                  |                                  
gctaccgcGTAGTTCCGCGTCACCGTTCATTTccc                                    >  1:9853553/1‑35 (MQ=255)
gctaccgcGTAGTTCCGCGTCACCGTTCATTTccc                                    <  1:13245364/35‑1 (MQ=255)
gctaccgcGTAGTTCCGCGTCACCGTTCATTTccc                                    <  1:15005006/35‑1 (MQ=255)
gctaccgcGTAGTTCCGCGTCACCGTTCATTTccc                                    >  1:19491057/1‑35 (MQ=255)
gctaccgcGTAGTTCCGCGTCACCGTTCATTTccc                                    >  1:19799729/1‑35 (MQ=255)
 cTACCGCGTAGTTCCGCGTCACCGTTCATTTCCCc                                   <  1:14784399‑M2/35‑2 (MQ=255)
 cTACCGCGTAGTTCCGCGTCACCGTTCATTTCCCc                                   <  1:16581438‑M2/35‑2 (MQ=255)
 cTACCGCGTAGTTCCGCGTCACCGTTCATTTCCCc                                   >  1:3758699‑M2/1‑34 (MQ=255)
  tACCGCGTAGTTCCGCGTCACCGTTCATTTCCCcc                                  >  1:9733214‑M2/1‑33 (MQ=255)
  tACCGCGTAGTTCCGCGTCACCGTTCATTTCCCcc                                  >  1:10361801‑M2/1‑33 (MQ=255)
  tACCGCGTAGTTCCGCGTCACCGTTCATTTCCCcc                                  <  1:2983306‑M2/35‑3 (MQ=255)
   aCCGCGTAGTTCCGCGTCACCGTTCATTTCCCcca                                 >  1:1636007‑M2/1‑32 (MQ=255)
   aCCGCGTAGTTCCGCGTCACCGTTCATTTCCCcca                                 >  1:4308732‑M2/1‑32 (MQ=255)
    ccGCGTAGTTCCGCGTCACCGTTCATTTCCCccag                                >  1:18218285‑M2/1‑31 (MQ=255)
    ccGCGTAGTTCCGCGTCACCGTTCATTTCCCccag                                >  1:11245360‑M2/1‑31 (MQ=255)
    ccGCGTAGTTCCGCGTCACCGTTCATTTCCCccag                                >  1:5011570‑M2/1‑31 (MQ=255)
    ccGCGTAGTTCCGCGTCACCGTTCATTTCCCcaag                                >  1:5482577‑M2/1‑31 (MQ=255)
      gcgTAGTTCCTCGTCACCGTTCATTTCCCCCAGCg                              >  1:4500684/1‑35 (MQ=255)
      gcgTAGTTCCGCGTCACCGTTCATTTCCCCCAGCg                              >  1:2092143/1‑35 (MQ=255)
      gcgTAGTTCCGCGTCACCGTTCATTTCCCCCAGCg                              >  1:8034330/1‑35 (MQ=255)
      gcgTAGTTCCGCGTCACCGTTCATTTCCCCCAGCg                              <  1:14674481/35‑1 (MQ=255)
       cgTAGTTCCGCGTCACCGTTCATTTCCCCCAGCGt                             <  1:16028138/35‑1 (MQ=255)
        gTAGTTCCGCGTCACCGTTCATTTCCCCCAGCGtc                            >  1:7586333/1‑35 (MQ=255)
        gTAGTTCCGCGTCACCGTTCATTTCACCCAGCGtc                            <  1:10024284/35‑1 (MQ=255)
        gTAGTTCAGCGTCACCGTTCATTTCCCCCAGCGtc                            <  1:3691189/35‑1 (MQ=255)
         tAGTTCCGCGTCACCGTTCATTTCCCCCAGCGtct                           <  1:17136031/35‑1 (MQ=255)
         tAGTTCCGCGTCACCGTTCATTTCCCCCAGCGtct                           <  1:1687003/35‑1 (MQ=255)
         tAGTTCCGCGTCACCGTTCATTTCCCCCAGCGtct                           >  1:16469007/1‑35 (MQ=255)
          aGTTCCGCGTCACCGTTCATTTCCCCCAGCGtctt                          >  1:3361958/1‑35 (MQ=255)
          aGTTCCGCGTCACCGTTCATTTCCCCCAGCGtctt                          <  1:2901553/35‑1 (MQ=255)
           gTTCCGCGTCACCGTTCATTTCCCCCCGCGtcctc                         >  1:12928494/1‑35 (MQ=38)
            ttCCGCGTCACCGTTCATTTCCCCCAGCGtcttct                        <  1:10179684/35‑1 (MQ=255)
            ttCCGCGTCACCGTTCATTTCCCCCAGCGtcttct                        <  1:2742192/35‑1 (MQ=255)
            ttCCGCGTCACCGTTCATTTCCCCCAGCGtcttct                        <  1:13466672/35‑1 (MQ=255)
             tCCGCGTCACCGTTCATTTCCCCCAGCGTCTTCTg                       >  1:10715934/1‑35 (MQ=255)
              ccGCGTCACCGTTCATTTCCCCCAGCGTCTTCTGc                      >  1:1090540/1‑35 (MQ=255)
              ccGCGTCACCGTTCATTTCCCCCAGCGTCTTCTGc                      <  1:20504633/35‑1 (MQ=255)
               cgcgTCACCGTTCATTTCCCCCAGCGTCTTCTGCa                     >  1:2936417/1‑35 (MQ=255)
               cgcgTCACCGTTCATTTCCCCCAGCGTCTTCTGCa                     <  1:2720286/35‑1 (MQ=255)
               cgcgTCACCGTTCATTTCCCCCAGCGTCTTCTGCa                     <  1:9557096/35‑1 (MQ=255)
               cgcgTCACCGTTCATTTCCCCCAGCGTCTTCTGCa                     <  1:15274280/35‑1 (MQ=255)
               cgcgTCACCGTTCATTTCCCCCAGCGTCTTCTGCa                     >  1:9530048/1‑35 (MQ=255)
                gcgTCACCGTTCATTTCCCCCAGCGTCTTCTGCAt                    <  1:17142938/35‑1 (MQ=255)
                gcgTCACCGTTCATTTCCCCCAGCGTCTTCTGCAt                    <  1:11096432/35‑1 (MQ=255)
                 cgTCCCCGTTCATTTCCCCCAGCGTCTTCTGCATc                   <  1:221168/35‑1 (MQ=255)
                 cgTCACCGTTCATTTCCCCCAGCGTCTTCTGCATc                   <  1:5664075/35‑1 (MQ=255)
                 cgTCACCGTTCATTTCCCCCAGCGTCTTCTGCATc                   >  1:18469178/1‑35 (MQ=255)
                 cgTCACCGTTCATTTCCCCCAGCGTCTTCTGCATc                   >  1:16430885/1‑35 (MQ=255)
                  gTCACCGTTCATTTCCCCCAGCGTCTTCTGCATCa                  <  1:9385824/35‑1 (MQ=255)
                  gTCACCGTTCATTTCCCCCAGCGTCTTCTGCATCa                  <  1:6842961/35‑1 (MQ=255)
                  gTCACCGTTCATTTCCCCCAGCGTCTTCTGCATCa                  <  1:19102725/35‑1 (MQ=255)
                  gTCACCGTTCATTTCCCCCAGCGTCTTCTGCATCa                  <  1:8233419/35‑1 (MQ=255)
                   tCACCGTTCATTTCCCCCAGCGTCTTCTGCATCAg                 >  1:1550546/1‑35 (MQ=255)
                   tCACCGTTCATTTCCCCCAGCGTCTTCTGCATCAg                 <  1:5424219/35‑1 (MQ=255)
                    cACCGTTCATTTCCCCCAGCGTCTTCTGCATCAGt                <  1:7746898/35‑1 (MQ=255)
                     aCCGTTCATTTCCCCCAGCGTCTTCTGCATCAGtt               <  1:14142438/35‑1 (MQ=255)
                     aCCGTTCATTTCCCCCAGCGTCTTCTGCATCAGtn               <  1:8999417/35‑1 (MQ=255)
                      nngNTNNTTTCCCCCAGCGTCTTCTGCATCAGTTc              <  1:6389580/33‑1 (MQ=37)
                      ccGTTCATTTCCCCCAGCGTCTTCTGCATCAGTTc              >  1:7440162/1‑35 (MQ=255)
                       cGTTCATTTCCTCCAGCGTCTTCTGCATCAGTCcc             >  1:10283335/1‑35 (MQ=37)
                       cGTTCATTTCCCCCAGCGTCTTCTGCATCAGTTcc             <  1:3955006/35‑1 (MQ=255)
                        gTTCATTTCCCCCAGCGTCTTCTGCATCAGTTCca            <  1:20190379/35‑1 (MQ=255)
                        gTTCATTTCCCCCAGCGTCTTCTGCATCAGTTCca            <  1:4797276/35‑1 (MQ=255)
                        gTTCATTCCCCccagccagtcagccagctgcgcaa            >  1:10062150‑M2/1‑11 (MQ=255)
                         ttCATTTCCCccagccagtcagccagctgcgcaat           >  1:6810551‑M2/1‑10 (MQ=255)
                         ttCATTTCCCCCAGCGTCTTCTGCATCAGTTCcac           >  1:5602561/1‑35 (MQ=255)
                         ttCATTTCCCCCAGCGTCTTCTGCATCAGTTCcac           <  1:9058857/35‑1 (MQ=255)
                         ttCATTTCCCCCAGCGTCTTCTGCATCAGTTCcac           >  1:17284244/1‑35 (MQ=255)
                         ttCATTTCCCCCAGCGTCTTCTGCATCAGTTCcac           <  1:16250346/35‑1 (MQ=255)
                          tCATTTCCCCCAGCGTCTTCTGCATCAGTTCcaca          <  1:16122730/35‑1 (MQ=255)
                          tCATTCCCCccagccagtcagccagctgcgcaatc          >  1:148617‑M2/1‑9 (MQ=255)
                          ccaTTTCCCccagccagtcagccagctgcgcaatc          >  1:13295448‑M2/2‑9 (MQ=255)
                           cATTTCCCCCATCGTCTTCTGCATCAGTTCCACAt         >  1:18801512/1‑35 (MQ=255)
                           cATTTCCCCCAGCGTCTTCTGCATCAGTTCCACAt         <  1:13127860/35‑1 (MQ=255)
                           cATTTCCCCCAGCGTCTTCTGCATCAGTTCCACAt         >  1:12142797/1‑35 (MQ=255)
                           cATTTCCCCCAGCGTCTTCTGCATCAGTTCCACAt         >  1:19134750/1‑35 (MQ=255)
                            atgtCCCCCAGCGTCTTCTGCATCAGTTCCACATc        <  1:6437806/32‑1 (MQ=255)
                            agttccCccagccagtcagccagctgcgcaatcat        >  1:11580060‑M2/3‑7 (MQ=255)
                            aTTTCCCCCAGCGTCTTCTGCATCAGTTCCACATc        >  1:5867194/1‑35 (MQ=255)
                            aTTTCCCCCAGCGTCTTCTGCATCAGTTCCACATc        >  1:11319771/1‑35 (MQ=255)
                             tttCCCCCAGCGTCTTCTGCATCAGTTCCACATCg       >  1:19452256/1‑35 (MQ=255)
                             tttCCCCCAGCGTCTTCTGCATCAGTTCCACATCg       <  1:10658270/35‑1 (MQ=255)
                             tttCCCCCAGCGTCTTCTGCATCAGTTCCACATCg       <  1:10324312/35‑1 (MQ=255)
                             ttcCCCccagccagtcagccagctgcgcaatcatc       >  1:11149468‑M2/1‑6 (MQ=255)
                              ttCCCccagccagtcagccagctgcgcaatcatct      >  1:15717118‑M2/1‑5 (MQ=255)
                              ttCCCCCAGCGTCTTCTGCATCAGTTCCACATCgg      <  1:18983333/35‑1 (MQ=255)
                              tgcccccAGCGTCTTCTGCATCAGTTCCACATCgg      <  1:4163687/33‑1 (MQ=255)
                              tccccccagccagtcagccagctgcgcaatcatct      >  1:14195366‑M2/3‑5 (MQ=255)
                               tCCCCCAGCGTCTTCTGCATCAGTTCAACATCggg     <  1:9593703/35‑1 (MQ=255)
                               ccccccagccagtcagccagctgcgcaatcatctg     >  1:18564719‑M2/2‑4 (MQ=255)
                               ccccccagccagtcagccagctgcgcaatcatctg     >  1:6543773‑M2/2‑4 (MQ=255)
                                cccccAGCGTCTTCTGCATCAGTTCCACATCGGGc    <  1:13448271/35‑1 (MQ=255)
                                cccccAGCGTCTTCTGCATCAGTTCCACATCGGGc    <  1:12659942/35‑1 (MQ=255)
                                cccccAGCGTCTTCTGCATCAGTTCCACATCGGGc    >  1:5975268/1‑35 (MQ=255)
                                 ccccagccagtcagccagctgcgcaatcatctgct   >  1:17601446‑M2/1‑2 (MQ=255)
                                 ccccAGCGTCTTCTGCATCAGTTCCACATCGGGCa   >  1:7449025/1‑35 (MQ=255)
                                  cccagccagtcagccagctgcgcaatcatctgctg  >  1:1317581‑M2/1‑1 (MQ=255)
                                  cccagccagtcagccagctgcgcaatcatctgatg  >  1:11894175‑M2/1‑1 (MQ=255)
                                  cccAGCGTCTTCTGCATCAGTTCCACATCGGGCAt  >  1:19330324/1‑35 (MQ=255)
                                  cccAGCGTCTTCTGCATCAGTTCCACATCGGGCAt  >  1:18147898/1‑35 (MQ=255)
                                  |                                  
GCTACCGCGTAGTTCCGCGTCACCGTTCATTTCCCCCAGCGTCTTCTGCATCAGTTCCACATCGGGCAT  >  REL606/3606307‑3606375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.