New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 422591 = | 80 (0.780) | 12 (0.150) | 3/38 | NT | 17.9% | intergenic (‑278/+184) | cyoA/ampG | cytochrome o ubiquinol oxidase subunit II/muropeptide transporter |
? | REL606 | = 2605528 | 47 (0.580) | coding (679/1254 nt) | glyA | serine hydroxymethyltransferase |
Only 100 of 214 total aligned reads displayed.
GTTTAACAAATAATTATCATTATGGTGACAATTGGGTGGGGGGGAAAATAAAGACTCATTAGCTGAATC > REL606/422557‑422625 | ggccgcagcgcggacccgccagggttttgtgagtg > 1:7487442‑M1/35‑35 (MQ=255) gTTTAACAAATAATTATCATTATGGTGACAATtgg < 1:14899159/35‑1 (MQ=255) gTTTAACAAATAATTATCATTATGGTGACAATtgg < 1:6567890/35‑1 (MQ=255) tttAACAAATAATTATCATTATGGTGACAATtggg > 1:3832444/1‑35 (MQ=255) gtttttctcgcggactccggttccgtagcgggggg < 1:12184170‑M1/3‑1 (MQ=255) gccgccgcgcggacccgccagggttttgtgagtgg < 1:10259806‑M1/2‑1 (MQ=255) gccgccgcgcggacccgccagggttttgtgagtgg < 1:697361‑M1/2‑1 (MQ=255) caggggaacagccagcagaccaccggcgagagcgg < 1:11648480‑M1/2‑1 (MQ=255) ttAACAAATAATTATCATTATGGTGACAATtgggt < 1:4758582/35‑1 (MQ=255) ttAACAAATAATTATCATTATGGTGACAATtgggt > 1:20241983/1‑35 (MQ=255) ccgccgcgcggacccgccagggttttgtgagtggt < 1:3373737‑M1/3‑1 (MQ=255) ccgccgcgcggacccgccagggttttgtgagtggt < 1:11082247‑M1/3‑1 (MQ=255) ccgccgcgcggacccgccagggttttgtgagtggt < 1:4876347‑M1/3‑1 (MQ=255) aggggaacagccagcagaccaccggcgagagcGGt < 1:14025910‑M1/3‑1 (MQ=255) aggggaacagccagcagaccaccggcgagagcGGt < 1:19902738‑M1/3‑1 (MQ=255) aggggaacagccagcagaccaccggcgagagcGGt < 1:17521371‑M1/3‑1 (MQ=255) tAACAAATAATTATCATTATGGTGACAATtgggtg < 1:7418824/35‑1 (MQ=255) gggaacagccagcagaccaccggcgagagcggggg < 1:9458990‑M1/5‑4 (MQ=255) gggaacagccagcagaccaccggcgagagcGGTgg < 1:15688254‑M1/5‑1 (MQ=255) gggaacagccagcagaccaccggcgagagcGGTgg < 1:16657015‑M1/5‑1 (MQ=255) gggaacagccagcagaccaccggcgagagcGGTgg < 1:17413320‑M1/5‑1 (MQ=255) gccgcgcggacccgccagggttttgtgagtggtgg > 1:3320404‑M1/31‑35 (MQ=255) gccgcgcggacccgccagggttttgtgagtggtgg < 1:974071‑M1/5‑1 (MQ=255) aaCAAATAATTATCATTATGGTGACAATtgggtgg < 1:3915623/35‑1 (MQ=255) aaCAAATAATTATCATTATGGTGACAATtgggtgg > 1:6895691/1‑35 (MQ=255) aaCAAATAATTATCATTATGGTGACAATtgggtgg < 1:19011182/35‑1 (MQ=255) ccgcgcggacccgccagggttttgtgagtGGTggg < 1:8273076‑M1/6‑1 (MQ=255) aCAAATAATTATCATTATGGTGACAATtgggtggg < 1:7789657/35‑1 (MQ=255) gaacagccagcagaccaccggcgagagcGGTgggg < 1:3698596‑M1/7‑1 (MQ=255) gaacagccagcagaccaccggcgagagcGGTgggg < 1:4948007‑M1/7‑1 (MQ=255) cgcgcggacccgccagggttttgtgagtGGTgggg < 1:2147401‑M1/7‑1 (MQ=255) cAAATAATTATCATTATGGTGACAATTGGGTgggg < 1:11435677/35‑1 (MQ=255) ctcgcggactccggttccgtagcgggGGGAggggg < 1:18478999‑M1/9‑1 (MQ=255) aaaTAATTATCATTATGGTGACAATTGGGTggggg < 1:3783352/35‑1 (MQ=255) aaaTAATTATCATTATGGTGACAATTGGGTggggg < 1:12996760/35‑1 (MQ=255) aaaTAATTATCATTATGGTGACAATTGGGTggggg > 1:2604039/1‑35 (MQ=255) cgcggacccgccagggttttgtgagtGGTgggggg < 1:20111477‑M1/9‑1 (MQ=255) acagccagcagaccaccggcgagagcGGTgggggg < 1:5729844‑M1/9‑1 (MQ=255) acagccagcagaccaccggcgagagcGGTgggggg < 1:6998721‑M1/9‑1 (MQ=255) aataatTATCATTATGGTGACAATTGGGTgggggg < 1:11527886/35‑1 (MQ=255) aataatTATCATTATGGTGACAATTGGGTgggggg < 1:19773981/35‑1 (MQ=255) gcggacccgccagggttttgtgagtGGTggggggg < 1:6322682‑M1/10‑1 (MQ=255) gcggacccgccagggttttgtgagtGGTggggggg < 1:8810253‑M1/10‑1 (MQ=255) gcggacccgccagggttttgtgagtGGTggggggg < 1:15860569‑M1/10‑1 (MQ=255) cagccagcagaccaccggcgagcgcGGtggggggc < 1:11250385‑M1/10‑2 (MQ=255) ataatTATCATTATGGTGACAATTGGGTggggggg > 1:4986634/1‑35 (MQ=255) agccagcagaccaccggcgagagcGGTGGGGGGGa < 1:5202221‑M1/11‑1 (MQ=255) gccagcagaccaccggcgagagcGGTGGGGGGGaa < 1:18601162‑M1/12‑1 (MQ=255) aatTATCATTATGGTGACAATTGGGTGGGGGGGaa > 1:3066582/1‑35 (MQ=255) aatTATCATTATGGTGACAATTGGGTGGGGGGGaa < 1:2985585/35‑1 (MQ=255) gacccgccagggttttgtgagtggtggggggggaa < 1:3020221‑M1/13‑4 (MQ=255) gacccgccagggttttgtgagtGGTGGGGGGGaaa < 1:17608014‑M1/13‑1 (MQ=255) gacccgccagggttttgtgagtGGTGGGGGGGaaa < 1:9442499‑M1/13‑1 (MQ=255) ccagcagaccacctgcgagagcGGTGGGGGGGaaa < 1:523962‑M1/13‑1 (MQ=255) atTATCATTATGGTGACAATTGGGTGGGGGGGcaa > 1:7970107/1‑35 (MQ=255) atTATCATTATGGTGACAATTGGGTGGGGGGGaaa < 1:18764884/35‑1 (MQ=255) ttATCATTATGGTGACAATTGGGTGGGGGGGaaaa > 1:19540388/1‑35 (MQ=255) cagcagaccaccggcgagagcGGTGGGGGGGaaaa < 1:12077096‑M1/14‑1 (MQ=255) cagcagaccaccggcgagagcGGTGGGGGGGaaaa < 1:17314847‑M1/14‑1 (MQ=255) cagcagaccaccggcgagagcGGTGGGGGGGaaaa < 1:15597821‑M1/14‑1 (MQ=255) acccgccagggttttgtgagtGGTGGGGGGGgaaa < 1:16972737‑M1/14‑1 (MQ=255) acccgccagggttttgtgagtGGTGGGGGGGaaaa < 1:4249396‑M1/14‑1 (MQ=255) gcagaccaccggcgagagcGGTGGGGGggaaaaaa < 1:5885077‑M1/16‑3 (MQ=255) aTCATTATGGTGACAATTGGGTGGGGGGGAAAATa > 1:11419710/1‑35 (MQ=255) cATTATGGTGACAATTGGGTGGGGGGGAAAATaaa < 1:2727823/35‑1 (MQ=255) ttATGGTGACAATTGGGTGGGGGGGAAAATAAAGa > 1:11143085/1‑35 (MQ=255) tATGGTGACAATTGGGTGGGGGGGAAAATAAAGAc > 1:16319648/1‑35 (MQ=255) tATGGTGACAATTGGGTGGGGGGGAAAATAAAGAc > 1:13268658/1‑35 (MQ=255) aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt < 1:683481/35‑1 (MQ=255) aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt > 1:10248040/1‑35 (MQ=255) aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt < 1:1842880/35‑1 (MQ=255) tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc > 1:1272309/1‑35 (MQ=255) tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc > 1:8574493/1‑35 (MQ=255) tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc > 1:4330905/1‑35 (MQ=255) ggTGACAATTGGGTGGGGGGGAAAATAAAGACTCa > 1:11283749/1‑35 (MQ=255) gTGACAATTGGGTGGGGGGGAAAATAAAGACTCAt < 1:6624333/35‑1 (MQ=255) tGACAATTGGGTGGGGGGGAAAATAAAGACTCAtt > 1:3252817/1‑35 (MQ=255) gACAATTGGGTGGGGGGGAAAATAAAGACTCATTa < 1:13429395/35‑1 (MQ=255) gACAATTGGGTGGGGGGGAAAATAAAGACTCATTa < 1:5853947/35‑1 (MQ=255) gACAATTGGGTGGGGGGGAAAATAAAGACTCATTa > 1:16901267/1‑35 (MQ=255) aCAATTGGGTGGGGGGGAAAATAAAGACTCATTAg > 1:17780935/1‑35 (MQ=255) aCAATTGGGTGGGGGGGAAAATAAAGACTCATTAg < 1:18787402/35‑1 (MQ=255) cAATTGGGTGGGGGGGAAAATAAAGACTCATTAGc < 1:17086014/35‑1 (MQ=255) cAATTGGGTGGGGGGGAAAATAAAGACTCATTAGc < 1:4628242/35‑1 (MQ=255) aaTTGGGTGGGGGGGAAAATAAAGACTCATTAGCt < 1:18691932/35‑1 (MQ=255) ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa < 1:20591563/35‑1 (MQ=255) ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa < 1:13795807/35‑1 (MQ=255) ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa > 1:18213262/1‑35 (MQ=255) ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa > 1:8900817/1‑35 (MQ=255) tgggtgggGGGGAAAATAAAGACTCATTAGCTGaa > 1:11822704/1‑35 (MQ=255) tgggtgggGGGGAAAATAAAGACTCATTAGCTGaa < 1:7247099/35‑1 (MQ=255) gggtgggGGGGAAAATAAAGACTCATTAGCTGAAt > 1:12252054/1‑35 (MQ=255) gggtgggGGGGAAAATAAAGACTCATTAGCCGAAt < 1:3486974/35‑1 (MQ=255) GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc > 1:1234755‑M1/1‑35 (MQ=255) GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc > 1:10535549‑M1/1‑35 (MQ=255) GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc < 1:9170637‑M1/35‑1 (MQ=255) GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc > 1:9026973‑M1/1‑35 (MQ=255) GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc > 1:13457696‑M1/1‑35 (MQ=255) GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc < 1:1436646‑M1/35‑1 (MQ=255) GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc < 1:15359976‑M1/35‑1 (MQ=255) | GTTTAACAAATAATTATCATTATGGTGACAATTGGGTGGGGGGGAAAATAAAGACTCATTAGCTGAATC > REL606/422557‑422625 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |