New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 4086554 | 71 (0.690) | 6 (0.070) | 5/42 | NT | 6.5% | coding (604/903 nt) | fieF | ferrous iron efflux protein F |
? | REL606 | 4620932 = | 111 (1.230) | intergenic (+49/‑41) | slt/trpR | lytic murein transglycosylase, soluble/Trp operon repressor |
Only 100 of 127 total aligned reads displayed.
TTTATATAGCGCGTTACGCATGGGATATGAGGCGGTACAGTCATTACTGGATCGCGCATTACCTGATGA > REL606/4086520‑4086588 | tttATATAGCGCGTTACGCATGGGATATGAGGCGG < 1:14337284‑M1/35‑1 (MQ=255) ttATATAGCGCGTTACGTATGGGATATGAGGCGGg > 1:7499399‑M1/1‑34 (MQ=255) ttATATAGCGCGTTACGCATGGGATATGAGGCGGt < 1:5480380/35‑1 (MQ=255) ttATATAGCGCGTTACGCATGGGATATGAGGCGGg > 1:9367883‑M1/1‑34 (MQ=255) ttATATAGCGCGTTACGCATGGGATATGAGGCGGg > 1:19329665‑M1/1‑34 (MQ=255) ttATATAGCGCGTTACGCATGGGATATGAGGCGGg > 1:12350515‑M1/1‑34 (MQ=255) tatataGCGCGTTACGCATGGGATATGAGGCGGgg > 1:105024‑M1/1‑33 (MQ=255) tatataGCGCGTTACGCATGGGATATGAGGCGGgg > 1:20116036‑M1/1‑33 (MQ=255) tataGCGCGTTACGCATGGGATATGAGGCGGgaga > 1:15818132‑M1/1‑31 (MQ=255) tataGCGCGTTACGCATGGGATATGAGGCGGTACa < 1:15640324/35‑1 (MQ=255) ataGCGCGTTACGCATGGGATATGAGGCGGTACAg < 1:15084410/35‑1 (MQ=255) ataGCGCGTTACGCATGGGATATGAGGCGGTACAg < 1:18689673/35‑1 (MQ=255) taGCGCGTTACGCATGGGATATGAGGCGGTACAGt < 1:913151/35‑1 (MQ=255) aGCGCGTTACGCATGGGATATGAGGCGGggcaggc > 1:7944328‑M1/1‑28 (MQ=255) aGCGCGTTACGCATGGGATATGAGGCGGTACAGTc < 1:17733304/35‑1 (MQ=255) gcgcGTTACGCATGGGATATGAGGCGGTACAGTCa < 1:2317948/35‑1 (MQ=255) cgcgTTACGCATGGGATATGAGGCGGgggagtcat > 1:20281550‑M1/1‑26 (MQ=255) cgcgTTACGCATGGGATATGAGGCGGTACAGTCAt < 1:18949332/35‑1 (MQ=255) cgcgTTACGCATGGGATATGAGGCGGTACAGTCAt < 1:18597806/35‑1 (MQ=255) cgcgTTACGCATGGGATATGAGGCGGTACAGTCAt < 1:18089957/35‑1 (MQ=255) gcgTTACGCATGGGATATGAGGCGGgggaggcatt > 1:6300936‑M1/1‑25 (MQ=255) gcgTTACGCATGGGATATGAGGCGGTACAGTCAtt < 1:6178104/35‑1 (MQ=255) gcgTTACGCATGGGATATGAGGCGGTACAGTCAtt < 1:20085682/35‑1 (MQ=255) gcgTTACGCATGGGATATGAGGCGGGGCAGTCAtt > 1:2555961/1‑35 (MQ=38) cgTTACGCATGGGATATGAGGCGGggggggcattt > 1:12039171‑M1/1‑24 (MQ=255) cgTTACGCATGGGATATGAGGCGGgggaggcattt > 1:855444‑M1/1‑24 (MQ=255) cgTTACGCATGGGATATGAGGCGGTACAGTCATTa < 1:4518477/35‑1 (MQ=255) tttACGCATGGGATATGAGGCGGTACAGTCATTAc < 1:9102977/34‑1 (MQ=255) tttACGCATGGGATATGAGGCGGTACAGTCATTAc < 1:16013883/34‑1 (MQ=255) gTTACGCATGGGATATGAGGCGGTACAGTCATTAc < 1:5466981/35‑1 (MQ=255) gTTACGCATGGGATATGAGGCGGTACAGTCATTAc < 1:10404582/35‑1 (MQ=255) gTTACGCATGGGATATGAGGCGGTACAGTCATTAc < 1:14959269/35‑1 (MQ=255) gTTACGCATGGGATATGAGGCGGTACAGTCATTAc < 1:1541002/35‑1 (MQ=255) ttACGCATGGGATATGAGGCGGTACAGTCATTACt < 1:13072922/35‑1 (MQ=255) aCGCATGGGATATGAGGCGGTACAGTCATTACTgg < 1:11400816/35‑1 (MQ=255) aCGCATGGGATATGAGGCGGTACAGTCATTACTgg < 1:3444256/35‑1 (MQ=255) aCGCATGGGATATGAGGCGGTACAGTCATTACTgg < 1:5200805/35‑1 (MQ=255) aCGCATGGGATATGAGGCGGTACAGTCATTACTgg < 1:11835626/35‑1 (MQ=255) aCGCATGGGATATGAGGCGGGGGAGGCATTACTgg > 1:1151574/1‑35 (MQ=19) cGCATGGGATATGAGGCGGTACAGTCATTACTGGa < 1:6150019/35‑1 (MQ=255) cGCATGGGATATGAGGCGGTACAGTCATTACTGGa < 1:11637868/35‑1 (MQ=255) gCATGGGATATGAGGCGGTACAGTCATTACTGGAt < 1:8394895/35‑1 (MQ=255) gCATGGGATATGAGGCGGTACAGTCATTACTGGAt < 1:16609892/35‑1 (MQ=255) gCATGGGATATGAGGCGGTACAGTCATTACTGGAt < 1:6074894/35‑1 (MQ=255) gCATGGGATATGAGGCGGTACAGTCATTACTGGAt < 1:10721059/35‑1 (MQ=255) cATGGGATATGAGGCGGTACAGTCATTACTGGATc < 1:12937397/35‑1 (MQ=255) aTGGGATATGAGGCGGTACAGTCATTACTGGATcg < 1:1967186/35‑1 (MQ=255) aTGGGATATGAGGCGGTACAGTCATTACTGGATcg < 1:12405788/35‑1 (MQ=255) aTGGGATATGAGGCGGTACAGTCATTACTGGATcg < 1:7338420/35‑1 (MQ=255) aTGGGATATGAGGCGGTACAGTCATTACTGGATcg < 1:15417294/35‑1 (MQ=255) gggATATGAGGCGGTACAGTCATTACTGGATcgcg < 1:18405284/35‑1 (MQ=255) gggATATGAGGCGGTACAGTCATTACTGGATcgcg < 1:17357816/35‑1 (MQ=255) ggATATGAGGCGGTACAGTCATTACTGGATCgcgc < 1:8448590/35‑1 (MQ=255) ggATATGAGGCGGTACAGTCATTACTGGATCgcgc < 1:827074/35‑1 (MQ=255) atatGAGGCGGTACAGTCATTACTGGATCGCGCAt < 1:16392795/35‑1 (MQ=255) atatGAGGCGGTACAGTCATTACTGGATCGCGCAt < 1:1597276/35‑1 (MQ=255) tatGAGGCGGTACAGTCATTACTGGATCGCGCAtt < 1:3737854/35‑1 (MQ=255) atGAGGCGGTACAGTCATTACTGGATCGCGCATTa < 1:6608073/35‑1 (MQ=255) atGAGGCGGTACAGTCATTACTGGATCGCGCATTa < 1:7045155/35‑1 (MQ=255) atGAGGCGGTACAGTCATTACTGGATCGCGCATTa < 1:14989208/35‑1 (MQ=255) atGAGGCGGTACAGTCATTACTGGATCGCGCATTa < 1:15481721/35‑1 (MQ=255) atGAGGCGGTACAGTCATTACTGGATCGCGCATTa < 1:19706794/35‑1 (MQ=255) tGAGGCGGTGCAGTCATTACTGGATCGCGCATTAc < 1:2473935/35‑1 (MQ=255) tGAGGCGGTACAGTCATTACTGGATCGCGCATTAc < 1:13513993/35‑1 (MQ=255) tGAGGCGGTAAAGTCATTACTGGATCGCGCATTAc < 1:2137639/35‑1 (MQ=255) gAGGCGGTACAGTCATTACTGGATCGCGCATTAcc < 1:9801761/35‑1 (MQ=255) gAGGCGGTACAGTCATTACTGGATCGCGCATTAcc < 1:11735270/35‑1 (MQ=255) gAGGCGGTACAGTCATTACTGGATCGCGCATTAcc < 1:18795925/35‑1 (MQ=255) gAGGCGGTACAGTCATTACTGGATCGCGCATTAcc < 1:3090549/35‑1 (MQ=255) gAGGCGGTACAGTCATTACTGGATCGCGCATTAcc < 1:3156112/35‑1 (MQ=255) aGGGGGTACAGTCATTACTGGATCGCGCATTACCt < 1:5506903/35‑1 (MQ=255) aGGCGGTACAGTCATTACTGGATCGCGCATTACCt < 1:17461591/35‑1 (MQ=255) aGGCGGTACAGTCATTACTGGATCGCGCATTACCt < 1:12987575/35‑1 (MQ=255) ggCGGTACAGTCATTACTGGATCGCGCATTCCCtg < 1:5401979/35‑1 (MQ=255) ggCGGTACAGTCATTACTGGATCGCGCATTACCtg < 1:16183838/35‑1 (MQ=255) ggCGGTACAGTCATTACTGGATCGCGCATTACCtg < 1:12994466/35‑1 (MQ=255) ggCGGTACAGTCATTACTGGATCGCGCATTACCtg < 1:5227022/35‑1 (MQ=255) ggCGGTACAGTCATTACTGGATCGCGCATTACCtg < 1:2785198/35‑1 (MQ=255) ggCGGTACAGTCATTACTGGATCGCGCATTACCtg < 1:11154095/35‑1 (MQ=255) gCGGTACAGTCATTACTGGATCGCGCATTACCtga < 1:5995152/35‑1 (MQ=255) gCGGTACAGTCATTACTGGATCGCGCATTACCtga > 1:4477937/1‑35 (MQ=255) cGGgggaggcattttgcttcccccgctaacaatgg > 1:3715892‑M1/1‑3 (MQ=255) cGGgggaggcattttgcttcccccgctaacaatgg > 1:19785655‑M1/1‑3 (MQ=255) cGGgggaggcattttgcttcccccgctaacaatgg > 1:2864276‑M1/1‑3 (MQ=255) cGGTACAGTCATTACTGGATCGCGCATTACCtgat > 1:12353066/1‑35 (MQ=255) cGGTACAGTCATTACTGGATCGCGCATTACCtgat < 1:8923728/35‑1 (MQ=255) gggggaggcattttgcttcccccgctaacaatggc > 1:13599689‑M1/1‑2 (MQ=255) gggggaggcattttgcttcccccgctaacaatggc > 1:15209233‑M1/1‑2 (MQ=255) gggggaggcattttgcttcccccgctaacaatggc > 1:4060109‑M1/1‑2 (MQ=255) ggTACAGTCATTACTGGATCGCGCATTACCtgatg > 1:16352752/1‑35 (MQ=255) ggTACAGTCATTACTGGATCGCGCATTACCtgatg > 1:18987179/1‑35 (MQ=255) ggTACAGTCATTACTGGATCGCGCATTACCtgatg < 1:11788149/35‑1 (MQ=255) ggTACAGTCATTACTGGATCGCGCATTACCtgatg > 1:5078568/1‑35 (MQ=255) ggggaggcattttgcttcccccgctaacaatggcg > 1:6021022‑M1/1‑1 (MQ=255) ggggaggcattttgcttcccccgctaacaatggcg > 1:10884537‑M1/1‑1 (MQ=255) ggggaggcattttgcttcccccgctaacaatggcg < 1:9409968‑M1/35‑35 (MQ=255) gTACAGTCATTACTGGATCGCGCATTTCCtcatga > 1:9799052/1‑35 (MQ=37) gTACAGTCATTACTGGATCGCGCATTACCtgatga > 1:14475599/1‑35 (MQ=255) gTACAGTCATTACTGGATCGCGCATTACCtgatga > 1:20184728/1‑35 (MQ=255) gTACAGTCATTACTGGATCGCGCATTACCtgatga < 1:2769148/35‑1 (MQ=255) | TTTATATAGCGCGTTACGCATGGGATATGAGGCGGTACAGTCATTACTGGATCGCGCATTACCTGATGA > REL606/4086520‑4086588 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |