New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 929308 =57 (0.550)8 (0.120) 3/32 NT 13.8% coding (1214/1653 nt) hcp hydroxylamine reductase
?REL606 = 3040633 62 (0.910)coding (654/810 nt) pppA bifunctional prepilin leader peptidase/ methylase

Only 100 of 124 total aligned reads displayed.

GGTGAAGTAGTGGCGCTCGCCGCGTGCGCCGTCACAGCCACCAAGCAGGAAGATATGACGCAGTTTTTC  >  REL606/929274‑929342
                                  |                                  
ggTGAAGTAGTGGCGCTCGCCGCGTGCGCCGTcac                                    >  1:5029517/1‑35 (MQ=255)
ggTGAAGTAGTGGCGCTCGCCGCGTGCGCCGTcac                                    >  1:3290347/1‑35 (MQ=255)
ggTGAAGTAGTGGCGCTCGCCGCGTGCGCCGTcac                                    <  1:2668365/35‑1 (MQ=255)
ggTGAAGTAGTGGCGCTCGCCGCGTGCGCCGTcac                                    >  1:17456838/1‑35 (MQ=255)
 gTGAAGTAGTGGCGCTCGCCGCGTGCGCCGTcaca                                   <  1:14672457/35‑1 (MQ=255)
 gTGAAGTAGTGGCGCTCGCCGCGTGCGCCGTcaca                                   <  1:15619564/35‑1 (MQ=255)
 gTGAAGTAGTGGCGCTCGCCGCGTGCGCCGTcaca                                   <  1:6115469/35‑1 (MQ=255)
 gTGAAGTAGTGGCGCTCGCCGCGTGCGCCGTcaca                                   <  1:20524463/35‑1 (MQ=255)
 gTGAAGTAGTGGCGCTCGCCGCGTGCGCCGTcaca                                   >  1:12872574/1‑35 (MQ=255)
 gTGAAGTAGTGGCGCTCGCCGCGTGCGCAGTcaca                                   <  1:1463744/35‑1 (MQ=255)
  tGAAGTAGTGGCGCTCGCCGCGTGCGCCGTCACAg                                  <  1:1778788/35‑1 (MQ=255)
  tGAAGTAGTGGCGCTCGCCGCGTGCGCCGTCACAg                                  <  1:2376666/35‑1 (MQ=255)
  tGAAGTAGTGGCGCTCGCCGCGTGCGCCGTCACAg                                  <  1:18144481/35‑1 (MQ=255)
   gAAGTAGTGGCGCTCGCCGCGTGCGCCGTCACAGc                                 <  1:7748632/35‑1 (MQ=255)
   gAAGTAGTGGCGCTCGCCGCGTGCGCCGTCACAGc                                 <  1:20046958/35‑1 (MQ=255)
    aaGTAGTTGCGCTCGCCGCGTGCGCCGTCACAGcc                                >  1:2987534/1‑35 (MQ=255)
    aaGTAGTGGCGCTCGCCGCGTGCGCCGTCACAGcc                                >  1:18019497/1‑35 (MQ=255)
    aaGTAGTGGCGCTCGCCGCGTGCGCCGTCACAGcc                                >  1:14413915/1‑35 (MQ=255)
     agtagtGGCGCTCGCCGCGTGCGCCGTCACAGcca                               >  1:14795309/1‑35 (MQ=255)
      ttagtGCCGCTCGCCGCGTGCGCCGTCACAGccac                              >  1:9049536/2‑35 (MQ=255)
        agtGGCGCTCGCCGCGTGCGCCGTCACAGccacca                            >  1:9669211/1‑35 (MQ=255)
        agtGGCGCTCGCCGCGTGCGCCGTCACAGccacca                            >  1:12405324/1‑35 (MQ=255)
          tGGCGCTCGCCGCGTGCGCCGTCACAGCCACCAAg                          >  1:10328111/1‑35 (MQ=255)
           ggCGCTCGCCGCGTGCGCCGTCACAGCCACCAAGc                         >  1:12995074/1‑35 (MQ=255)
           ggCGCTCGCCGCGTGCGCCGTCACAGCCACCAAGc                         >  1:14057786/1‑35 (MQ=255)
           ggCGCTCGCCGCGTGCGCCGTCACAGCCACCAAGc                         >  1:8413915/1‑35 (MQ=255)
            gcgcTCGCCGCGTGCGCCGTCACAGCCACCAAGCa                        >  1:1956966/1‑35 (MQ=255)
             cgcTCGCCGCGTGCGCCGTCACAGCCACCAAGCAg                       >  1:12939049/1‑35 (MQ=255)
             cgcACGCCGCGTGCGCCGTCACAGCCACTAAGCAg                       >  1:8807465/1‑35 (MQ=37)
              gcTCGCCGCGTGCGCCGTCACAGCCACCAAGCAgg                      >  1:14825319/1‑35 (MQ=255)
              gcTCGCCGCGTGCGCCGTCACAGCCACCAAGCAgg                      >  1:10445983/1‑35 (MQ=255)
              gcTCGCCGCGTGCGCCGTCACAGCCACCAAGCAgg                      >  1:4722398/1‑35 (MQ=255)
              gcTCGCCGCGTGCGCCGTCACAGCCACCAAGCAgg                      >  1:5734798/1‑35 (MQ=255)
              gcTCGCCGCGTGCGCCGTCACAGCCACCAAGCAgg                      >  1:6861871/1‑35 (MQ=255)
              gcTCGCCGCGTGCGCCGTCACAGCCACCAAGCAgg                      >  1:7706907/1‑35 (MQ=255)
              gcTCGCCGCGTGCGCCGTCACAGCCACCAAGCAgg                      >  1:13445059/1‑35 (MQ=255)
               cTCGCCGCGTGCGCCGTCACAGCCACCAAGCAGGa                     >  1:492524/1‑35 (MQ=255)
                tCGCCGCGTGCGCCGTCACAGCCACCAAGCAGGaa                    >  1:19255895/1‑35 (MQ=255)
                 cgccgcGTGCGCCGTCACAGCCACCAAGCAGGAAg                   >  1:18731816/1‑35 (MQ=255)
                 cgccgcGTGCGCCGTCACAGCCACCAAGCAGGAAg                   >  1:19995351/1‑35 (MQ=255)
                  gccgcGTGCGCCGTCACAGCCACCAAGCAGGAAGa                  >  1:712608/1‑35 (MQ=255)
                   ccgcGTGCGCCGTCACAGCCACCAAGCAGGAAGat                 >  1:5426889/1‑35 (MQ=255)
                    cgcgTGCGCCGTCACATCCACCAAGCAGGAAGata                >  1:15440153/1‑35 (MQ=255)
                     gcgTGCGCCGTCACAGCCACCAAGCAGGAAGatat               >  1:2995119/1‑35 (MQ=255)
                     gcgTGCGCCGTCACAGCCACCAAGCAGGAAGatat               >  1:16152997/1‑35 (MQ=255)
                     gcgTGCGCCGTCACAGCCACCAAGCAGGAAGatat               >  1:20318896/1‑35 (MQ=255)
                       gcgcgcCGCCCCAGCCACCAAGCAGGAAGATATGa             <  1:2258735/33‑1 (MQ=25)
                       gTGCGCCGTCACAGCCACCAAGTAGGAAGATATGa             >  1:7317317/1‑35 (MQ=255)
                       gTGCGCCGTCACAGCCACCAAGCAGGAAGATATGa             >  1:8312176/1‑35 (MQ=255)
                       gTGCGCCGTCACAGCCACCAAGCAGGAAGATATGa             >  1:7225454/1‑35 (MQ=255)
                       gTGCGCCGTCACAGCCACCAAGCAGGAAGATATGa             >  1:9727533/1‑35 (MQ=255)
                        tGCGCCGTCACAGCCACCAAGCAGGAAGATATGAc            >  1:6539138/1‑35 (MQ=255)
                        tGCGCCGTCACAGCCACCAAGCAGGAAGATATGAc            >  1:13611324/1‑35 (MQ=255)
                        tGCGCCGTCACAGCCACCAAGCAGGAAGATATGAc            >  1:5071319/1‑35 (MQ=255)
                        tGCGCCGTCACAGCCACCAAGCAGGAAGATATGAc            >  1:4546621/1‑35 (MQ=255)
                         gcgcCGTCACAGCCACCAAGCAGGAAGATATGACg           >  1:9119875/1‑35 (MQ=255)
                         gcgcCGTCACAGCCACCAAGCAGGAAGATATGACg           >  1:12566939/1‑35 (MQ=255)
                         gcgcCGTCACAGCCACCAAGCAGGAAGATATGACg           >  1:7526256/1‑35 (MQ=255)
                         gccccccccCAGCCACCAAGCAGGAAGATATGACg           >  1:18405914‑M1/10‑35 (MQ=255)
                          cgcCGTCACAGCCACCAAGCAGGAAGATATGACGc          >  1:13251310/1‑35 (MQ=255)
                          ccccccccCAGCCACCAAGCAGGAAGATATGACGc          >  1:10088027‑M1/9‑35 (MQ=255)
                          ccccccccCAGCCACCAAGCAGGAAGATATGACGc          >  1:1236225‑M1/9‑35 (MQ=255)
                           gcCGTCACAGCCACCAAGCAGGAAGATATGACGCa         >  1:148580/1‑35 (MQ=255)
                           gcCGCCCCAGCCACCAAGCAGGAAGATATGACGCa         <  1:13644336/35‑1 (MQ=37)
                           cccccccCAGCCACCAAGCAGGAAGATATGACGCa         >  1:12064066‑M1/8‑35 (MQ=255)
                           cccccccCAGCCACCAAGCAGGAAGATATGACGCa         >  1:12978814‑M1/8‑35 (MQ=255)
                           cccccccCAGCCACCAAGCAGGAAGATATGACGCa         >  1:18643903‑M1/8‑35 (MQ=255)
                            ccGTCACAGCCACCAAGCAGGAAGATATGACGCAg        >  1:3430089/1‑35 (MQ=255)
                            ccGTCACAGCCACCAAGCAGGAAGATATGACGCAg        >  1:14568790/1‑35 (MQ=255)
                             ctcccCAGCCACCAAGCAGGAAGATATGACGCAGt       >  1:7910823‑M1/6‑35 (MQ=255)
                             cctCACAGCCACCAAGCAGGAAGATATGACGCAGt       <  1:161951/33‑1 (MQ=255)
                             cccccCAGCCACCAAGCAGGAAGATATGACGCAGt       >  1:2863724‑M1/6‑35 (MQ=255)
                             cGTCACAGCCACCAAGCAGGAAGATATGACGCAGt       >  1:12836765/1‑35 (MQ=255)
                             cGTCACAGCCACCAAGCAGGAAGATATGACGCAGt       >  1:5126965/1‑35 (MQ=255)
                             cGTCACAGCCACCAAGCAGGAAGATATGACGCAGt       >  1:5772337/1‑35 (MQ=255)
                              gTCACAGCCACCAAGCAGGAAGATATGACGCAGtt      >  1:7732512/1‑35 (MQ=255)
                              gTCACAGCCACCAAGCAGGAAGATATGACGCAGtt      >  1:8501259/1‑35 (MQ=255)
                              ccccCAGCCACCAAGCAGGAAGATATGACGCAGtt      >  1:10921807‑M1/5‑35 (MQ=255)
                              ccccCAGCCACCAAGCAGGAAGATATGACGCAGtt      >  1:13805929‑M1/5‑35 (MQ=255)
                               tCACAGCCACCAAGCAGGAAGATATGACGCAGttt     >  1:16385864/1‑35 (MQ=255)
                               tCACAGCCACCAAGCAGGAAGATATGACGCAGttt     >  1:15565086/1‑35 (MQ=255)
                               tCACAGCCACCAAGCAGGAAGATATGACGCAGttt     >  1:37427/1‑35 (MQ=255)
                               cccCAGCCACCAAGCAGGAAGATATGACGCAGttt     >  1:13517933‑M1/4‑35 (MQ=255)
                               acacaGCCACCAAGCAGGAAGATATGACGCAGttt     <  1:2401779/34‑1 (MQ=255)
                                ccCAGCCACCAAGCAGGAAGATATGACGCAGtttt    >  1:6610857‑M1/3‑35 (MQ=255)
                                ccCAGCCACCAAGCAGGAAGATATGACGCAGtttt    >  1:17370305‑M1/3‑35 (MQ=255)
                                ccCAGCCACCAAGCAGGAAGATATGACGCAGtttt    >  1:16795657‑M1/3‑35 (MQ=255)
                                cacaGCCACCAAGCAGGAAGATATGACGCAGtttt    >  1:1829580/1‑35 (MQ=255)
                                cacaGCCACCAAGCAGGAAGATATGACGCAGtttt    >  1:16480131/1‑35 (MQ=255)
                                 cCAGCCACCAAGCAGGAAGATATGACGCAGttttt   >  1:1005664‑M1/2‑35 (MQ=255)
                                 acaGCCACCAAGCAGGAAGATATGACGCAGttttt   >  1:11293858/1‑35 (MQ=255)
                                 acaGCCACCAAGCAGGAAGATATGACGCAGttttt   >  1:3357767/1‑35 (MQ=255)
                                 acaGCCACCAAGCAGGAAGATATGACGCAGttttt   >  1:9195381/1‑35 (MQ=255)
                                 acaGCCACCAAGCAGGAAGATATGACGCAGttttt   >  1:9452096/1‑35 (MQ=255)
                                  CAGCCACCAAGCAGGAAGATATGACGCAGTTTTTc  >  1:13162233‑M1/1‑35 (MQ=255)
                                  CAGCCACCAAGCAGGAAGATATGACGCAGTTTTTc  <  1:17668492‑M1/35‑1 (MQ=255)
                                  CAGCCACCAAGCAGGAAGATATGACGCAGTTTTTc  >  1:2985392‑M1/1‑35 (MQ=255)
                                  CAGCCACCAAGCAGGAAGATATGACGCAGTTTTTc  <  1:16079966‑M1/35‑1 (MQ=255)
                                  CAGCCACCAAGCAGGAAGATATGACGCAGTTTTTc  <  1:9423549‑M1/35‑1 (MQ=255)
                                  CAGCCACCAAGCAGGAAGATATGACGCAGTTTTTc  <  1:4516807‑M1/35‑1 (MQ=255)
                                  |                                  
GGTGAAGTAGTGGCGCTCGCCGCGTGCGCCGTCACAGCCACCAAGCAGGAAGATATGACGCAGTTTTTC  >  REL606/929274‑929342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.