New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1145450100 (0.970)8 (0.100) 4/36 NT 10.0% intergenic (‑15/‑140) flgA/flgB flagellar basal body P‑ring biosynthesis protein A/flagellar basal‑body rod protein B
?REL606 = 3613817 69 (0.900)coding (1255/1950 nt) yhjK predicted diguanylate cyclase

Only 100 of 190 total aligned reads displayed.

CTACGTTTTATTATCAGCATTTTCGCCCCCAGCCATTTCTACAACGTGAATTGTACCTGTCCGCAATGA  >  REL606/1145416‑1145484
                                  |                                  
cTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA                                    <  1:8261194‑M1/35‑1 (MQ=255)
 tACGTTTTATTATCAGCATTTTCGCCCCCCGCCAt                                   >  1:7447601/1‑35 (MQ=255)
 tACGTTTTATTATCAGCATTTTCGCCCCCAGCCAt                                   >  1:13127799/1‑35 (MQ=255)
 tACGTTTTATTATCAGCATTTTCGCCCCCAGCCAt                                   >  1:15942587/1‑35 (MQ=255)
 tACGTTTTATTATCAGCATTTTCGCCCCCAGCCAt                                   >  1:3522486/1‑35 (MQ=255)
   ctttttATTATCAGCATTTTCGCCCCCAGCCAttt                                 <  1:2604466/33‑1 (MQ=255)
   cGTTTTATTATCAGCATTTTCGCCCCCAGCCAttt                                 <  1:85618/35‑1 (MQ=255)
   cGTTTTATTATCAGCATTTTCGCCCCCAGCCAttt                                 >  1:7350873/1‑35 (MQ=255)
      tttATTATCAGCATTTTACCCCCCAGCCATTTCTa                              <  1:11091590/35‑1 (MQ=38)
       ttattaTCAGCATTTTCGCCCCCAGCCATTTCTAc                             >  1:14149104/1‑35 (MQ=255)
         attatCAGCATTTTCGCCCCCAGCCATTTCTACaa                           >  1:13278833/1‑35 (MQ=255)
         attatCAGCATTTCCCCCCCCAGCCATTTCTACaa                           <  1:575961/35‑1 (MQ=38)
          ttatCAGCTTTTCCCCCCCCAGCCATTTCTACAAc                          <  1:10228319/35‑1 (MQ=25)
          ttatCAGCATTTCCCCCCCCAGCCATTTCTACAAc                          <  1:9981475/35‑1 (MQ=38)
           tatCAGCATTTTCGCCCCCAGCCATTTCTACAACg                         >  1:20411166/1‑35 (MQ=255)
           tatCAGCATTTTCGCCCCCAGCCATTTCTACAACg                         >  1:196722/1‑35 (MQ=255)
           tatCAGCATTTTCGCCCCCAGCCATTTCTACAACg                         >  1:6595293/1‑35 (MQ=255)
            atCAGCATTTTCGCCCCCAGCCATTTCTACAACGt                        >  1:14915940/1‑35 (MQ=255)
            atCAACATTTCCCCCCCCAGCCATTTCTACAACGt                        <  1:3297743/35‑1 (MQ=25)
             tCAGCTTTTTCCCCCCCAGCCATTTCTACAACGTg                       <  1:5442222/35‑1 (MQ=38)
              cAGCTTTTCCCCCCCCAGCCATTTCTACAACGTGa                      <  1:18111098/35‑1 (MQ=25)
              cAGCATTTTCGCCCCCAGCCATTTCTACAACGTGa                      >  1:19236409/1‑35 (MQ=255)
              cAGCATTTTCGCCCCCAGCCATTTCTACAACGTGa                      >  1:10660707/1‑35 (MQ=255)
                gCATTTTCGCCCCCAGCCATTTCTACAACGTGAAt                    >  1:1319022/1‑35 (MQ=255)
                gCATTTTCGCCCCCAGCCATTTCTACAACGTGAAt                    >  1:80549/1‑35 (MQ=255)
                gCATTTTCGCCCCCAGCCATTTCTACAACGCGAAt                    >  1:7648998/1‑35 (MQ=255)
                 gcttttcgCCCCCAGCCAcaggtcgagatgaccag                   <  1:2976972‑M1/33‑18 (MQ=255)
                 ctttttCGCCCCCAGCCATTTCTACAACGTGAAtt                   <  1:10505789/33‑1 (MQ=255)
                 cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt                   >  1:17343553/1‑35 (MQ=255)
                 cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt                   >  1:2062644/1‑35 (MQ=255)
                 cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt                   >  1:452773/1‑35 (MQ=255)
                 cATTTTCGCCCCCAGCCATTTCTACAAAGTGAAtt                   <  1:12138482/35‑1 (MQ=255)
                  aTTTTCGCCCCCAGCCATTTCTACAACGTGAATTg                  >  1:7930241/1‑35 (MQ=255)
                  aTTTTCGCCCCCAGCCATTTCTACAACGTGAATTg                  >  1:12446847/1‑35 (MQ=255)
                  aTTTTCCCCCCCAGCCATTTCTACAACGTGAATTg                  <  1:11262031/35‑1 (MQ=255)
                  aTTTTCCCCCCCAGCCATTTCTACAACGTGAATTg                  <  1:10011342/35‑1 (MQ=255)
                   ttttCGCCCCCAGCCATTTCTACAACGTGAATTGt                 >  1:706238/1‑35 (MQ=255)
                    tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa                >  1:5705592/1‑35 (MQ=255)
                    tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa                <  1:6395315/35‑1 (MQ=255)
                    tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa                >  1:10358004/1‑35 (MQ=255)
                    tttCCCCCCCAGCCATTTCTACAACGTGAATTGTa                <  1:4965950/35‑1 (MQ=255)
                     ctcGCCCCCAGCCAcaggtcgagatgaccagcggt               <  1:9844940‑M1/34‑22 (MQ=255)
                      tCGCCCCCAGCCATTTCTACAACGTGAATTGTAcc              >  1:12225420/1‑35 (MQ=255)
                      tCGCCCCCAGCCATTTCTACAACGTGAATTGTAcc              >  1:18371799/1‑35 (MQ=255)
                      ccccccccAGCCATTTCTACAACGTGAATTGTAcc              <  1:19434045/32‑1 (MQ=255)
                       cccccccagCCAcaggtcgagatgaccagcggtaa             <  1:1663014‑M1/33‑24 (MQ=255)
                       cNCCCCCAGCCATTTCTACAACGTGAATTGTACCn             <  1:19891166/35‑1 (MQ=255)
                       cGCTCCCAGCCAcaggtcgagatgaccagcggtaa             <  1:5267305‑M1/35‑24 (MQ=255)
                       cGCCCCCAGCCATTTCTACAACGTGAATTGTACCt             >  1:4953837/1‑35 (MQ=255)
                       cGCCCCCAGCCATTTCTACAACGTGAATTGTACCt             >  1:14585632/1‑35 (MQ=255)
                       cGCCCCAAGCCATTTCTACAACGTGAATTGTACCt             <  1:3214409/35‑1 (MQ=255)
                        gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg            >  1:19956199/1‑35 (MQ=255)
                        gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg            >  1:16648800/1‑35 (MQ=255)
                        gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg            >  1:11847006/1‑35 (MQ=255)
                        gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg            >  1:14220466/1‑35 (MQ=255)
                        ccccccaGCCAcaggtcgagatgaccagcggtaaa            <  1:9341412‑M1/34‑25 (MQ=255)
                        ccccccaGCCAcaggtcgagatgaccagcggtaaa            <  1:1139372‑M1/34‑25 (MQ=255)
                        ccccccAGCCATTTCTACAACGTGAATTGTACCTg            <  1:16408565/34‑1 (MQ=255)
                        ccccccAGCCATTTCTACAACGTGAATTGTACCTg            <  1:16884693/34‑1 (MQ=255)
                        acccccaGCCAcaggtcgagatgaccagcggtaaa            <  1:10148076‑M1/34‑25 (MQ=255)
                         cccccAGCCAcaggtcgagatgaccagcggtaaac           <  1:4234132‑M1/35‑26 (MQ=255)
                         cccccAGCCAcaggtcgagatgaccagcggtaaac           <  1:8867781‑M1/35‑26 (MQ=255)
                         cccccAGCCATTTCTACAACGTGAATTGTACCTGt           >  1:253760/1‑35 (MQ=255)
                          ccccAGCCAcaggtcgagatgaccagcggtaaact          <  1:8356968‑M1/35‑27 (MQ=255)
                          ccccAGCCAcaggtcgagatgaccagcggtaaact          <  1:16577309‑M1/35‑27 (MQ=255)
                           cccAGCCATTTCTACAACGTGAATTGTACCTGTcc         <  1:3670443/35‑1 (MQ=255)
                           cccAGCCATTTCTACAACGTGAATTGTACCTGTcc         <  1:2271009/35‑1 (MQ=255)
                            ccAGCCAcaggtcgagatgaccagcggtaaactgg        <  1:9601908‑M1/35‑29 (MQ=255)
                            ccAGCCAcaggtcgagatgaccagcggtaaactgg        <  1:18163114‑M1/35‑29 (MQ=255)
                            ccAGCCATTTCTACAACGTCAATTGTACCTGTCCg        >  1:18976821/1‑35 (MQ=255)
                            ccAGCAATTTCTACAACGTGAATTGTACCTGTCCg        <  1:20216461/35‑1 (MQ=255)
                             cAGCCAcaggtcgagatgaccagcggtaaaatggt       >  1:13628533‑M1/1‑6 (MQ=255)
                             cAGCCAcaggtcgagatgaccagcggtaaaatggt       >  1:6897450‑M1/1‑6 (MQ=255)
                             cAGCCATTTCTACAACGTGAATTGTACCTGTcctc       >  1:3932384/1‑33 (MQ=255)
                              aGCCAcaggtcgagatgaccagcggtaaactggtc      <  1:17130524‑M1/35‑31 (MQ=255)
                              aGCCAcaggtcgagatgaccagcggtaaactggtc      <  1:3723687‑M1/35‑31 (MQ=255)
                              aGCCAcaggtcgagatgaccagcgggaaactggtc      >  1:385226‑M1/1‑5 (MQ=255)
                              aGCCAcaggtcgagatgaccagcgggaaactggtc      >  1:11420197‑M1/1‑5 (MQ=255)
                              aGCCAcaggtcgagatgaccagcgggaaactggtc      >  1:11620837‑M1/1‑5 (MQ=255)
                               gCCAcaggtcgagatgaccagcggtaaactggtca     <  1:15296884‑M1/35‑32 (MQ=255)
                               gCCAcaggtcgagatgaccagcggtaaactggtca     <  1:7735430‑M1/35‑32 (MQ=255)
                               gCCAcaggtcgagatgaccagcgggaaactggtca     >  1:20168428‑M1/1‑4 (MQ=255)
                               gCCATTTCTACAACGTGAATTGTACCTGTCCGCaa     <  1:12692018/35‑1 (MQ=255)
                                ccAcaggtcgagatgaccagcggtaaactggtcag    >  1:2342955‑M1/1‑3 (MQ=255)
                                ccAcaggtcgagatgaccagcggtaaactggtcag    <  1:15419607‑M1/35‑33 (MQ=255)
                                ccAcaggtcgagatgaccagcggtaaactggtcag    <  1:4176129‑M1/35‑33 (MQ=255)
                                ccATTTCTACAACGTGAATTGTACCTGTCCGCAAt    >  1:12243061/1‑35 (MQ=255)
                                ccATTTCTACAACGTGAATTGTACCTGTCCGCAAt    <  1:14540319/35‑1 (MQ=255)
                                ccATTTCTACAACGTGAATTGTACCTGTCCGCAAt    >  1:9119049/1‑35 (MQ=255)
                                ccATTTCTACAACGTGAATTGTACCTGTCCGCAAt    <  1:9549257/35‑1 (MQ=255)
                                ccATTTCTACAACGTGAATTGTACCTGTCCGCAAt    <  1:15044366/35‑1 (MQ=255)
                                 cacaggtcgagatgaccagcggtaaactggtcagt   <  1:13664452‑M1/35‑34 (MQ=255)
                                 cacaggtcgagatgaccagcggtaaactggtcagt   <  1:5629024‑M1/35‑34 (MQ=255)
                                 cATTTCTACAACGTGAATTGTACCTGTCCGCAATg   >  1:7818697/1‑35 (MQ=255)
                                 cATTTCTACAACGTGAATTGTACCTGTCCGCAATg   >  1:8162263/1‑35 (MQ=255)
                                  acaggtcgagatgaccagcggtaaactggtcagtg  <  1:2730403‑M1/35‑35 (MQ=255)
                                  acaggtcgagatgaccagcggtaaactggtcagtg  <  1:17822454‑M1/35‑35 (MQ=255)
                                  aTTTCTACAACGTGAATTGTACCTGTCCGCAATGa  >  1:3415015/1‑35 (MQ=255)
                                  aTTTCTACAACGTGAATTGTACCTGTCCGCAATGa  <  1:20426709/35‑1 (MQ=255)
                                  aTTTCTACAACGTGAATTGTACCTGTCCGCAATGa  <  1:8930794/35‑1 (MQ=255)
                                  |                                  
CTACGTTTTATTATCAGCATTTTCGCCCCCAGCCATTTCTACAACGTGAATTGTACCTGTCCGCAATGA  >  REL606/1145416‑1145484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.