New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3092326 = | 61 (0.590) | 23 (0.240) | 8/44 | NT | 23.7% | coding (505/927 nt) | yqhG | hypothetical protein |
? | REL606 | 4085858 = | 92 (0.980) | intergenic (+56/‑93) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F |
Only 100 of 146 total aligned reads displayed.
AACGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACA > REL606/3092292‑3092360 | aaCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAAc > 1:2942880/1‑35 (MQ=255) aaCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAAc > 1:8844603/1‑35 (MQ=255) aaCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAAc < 1:4643951/35‑1 (MQ=255) aCGCTGGCCGCTTTAGCTTCGTTGCAAAAATAACa > 1:15825779/1‑35 (MQ=255) aCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACa > 1:18386674/1‑35 (MQ=255) aCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACa < 1:17148958/35‑1 (MQ=255) aCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACa > 1:17573725/1‑35 (MQ=255) aCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACa < 1:4902603/35‑1 (MQ=255) aCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACa < 1:5395790/35‑1 (MQ=255) cGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAg < 1:16429158/35‑1 (MQ=255) cGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAg > 1:8454156/1‑35 (MQ=255) cGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAg > 1:13902207/1‑35 (MQ=255) gCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGc < 1:2457510/35‑1 (MQ=255) gCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGc < 1:12640660/35‑1 (MQ=255) gCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGc < 1:11971396/35‑1 (MQ=255) gCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGc < 1:17238622/35‑1 (MQ=255) tgtccGCTTTAGCTTCGTTGCAAAAAGAACAGCCg > 1:16617017/4‑35 (MQ=255) tGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCg > 1:8001821/1‑35 (MQ=255) ggCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCgg > 1:18066609/1‑35 (MQ=255) gCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGa > 1:2516262/1‑35 (MQ=255) gCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGa > 1:16986751/1‑35 (MQ=255) gCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGa > 1:15251492/1‑35 (MQ=255) gCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGa > 1:10242417/1‑35 (MQ=255) cGCTTTAGCTTCGTTGCAAAAAGAACAGCCGTAAg > 1:3043142/1‑35 (MQ=255) cGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAg > 1:3043991/1‑35 (MQ=255) gCTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAGc > 1:3502751/1‑35 (MQ=255) cTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAGcc > 1:704325/1‑35 (MQ=255) cTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAGcc > 1:7660458/1‑35 (MQ=255) cTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAGcc > 1:18675055/1‑35 (MQ=255) tttAGCTTCGTTGCAAAAAGAACAGCCGTAAGCCt > 1:20497707/1‑35 (MQ=255) tttAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCt > 1:1210397/1‑35 (MQ=255) tttAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCt > 1:18569116/1‑35 (MQ=255) ttAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCtt > 1:16695748/1‑35 (MQ=255) ttAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCtt > 1:14543623/1‑35 (MQ=255) ttAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCtt > 1:9889631/1‑35 (MQ=255) tAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCttt > 1:1297916/1‑35 (MQ=255) aGCTTCGTTGCAAAAAGAACAGCCGGAAGCCTttg > 1:382831/1‑35 (MQ=255) aGCTTCGTTGCAAAAAGAACAGCCGGAAGCCTttg > 1:11851588/1‑35 (MQ=255) aGCTTCGTTGCAAAAAGAACAGCCGGAAGCCTttg > 1:9298373/1‑35 (MQ=255) gCTTCGTTGCAAAAAGAACAGCCGGAAGCCTttgt > 1:2761992/1‑35 (MQ=255) gCTTCGTTGCAAAAAGAACAGCCGGAAGCCTttgt > 1:258642/1‑35 (MQ=255) ttCGTTGCAAAAAGAACATCCGGAAGCCTttgttg > 1:3921782/1‑35 (MQ=255) ttCGTTGCAAAAAGAACAGCCGGAAGCCTttgttg > 1:13564544/1‑35 (MQ=255) ttCGTTGCAAAAAGAACAGCCGGAAGCCTttgttg > 1:9300451/1‑35 (MQ=255) tCGTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGc > 1:19837182/1‑35 (MQ=255) cGTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGcc > 1:4234417/1‑35 (MQ=255) cGTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGcc > 1:9590396/1‑35 (MQ=255) gTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCg > 1:10022374/1‑35 (MQ=255) gTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCg > 1:10565234/1‑35 (MQ=255) gTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCg > 1:14988658/1‑35 (MQ=255) ttGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCGa > 1:14871149/1‑35 (MQ=255) ttGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCGa > 1:15866104/1‑35 (MQ=255) taaaaaacccccCAGCCGGAAGCCTTTGTTGCCGa > 1:475822‑M1/13‑35 (MQ=255) aaaaaaacccccCAGCCGGAAGCCTTTGTTGCCGa > 1:952132‑M1/13‑35 (MQ=255) aaaaaaaaccccCAGCCGGAAGCCTTTGTTGCCGa > 1:8333684‑M1/13‑35 (MQ=255) aaaaaaaaccccCAGCCGGAAGCCTTTGTTGCCGa > 1:6055660‑M1/13‑35 (MQ=255) aaaaaaaaccccCAGCCGGAAGCCTTTGTTGCCGa > 1:1857658‑M1/13‑35 (MQ=255) aaaaaaaccccCAGCCGGAAGCCTTTGTTGCCGaa > 1:8915614‑M1/12‑35 (MQ=255) gCAAAAAGAACAGCCGGAAGCCTTTGTTGCCGAAc > 1:16503240/1‑35 (MQ=255) cAAAAAGAACAGCCGGAAGCCTTTGTTGCCGAAct > 1:17966747/1‑35 (MQ=255) cAAAAAGAACAGCCGGAAGCCTTTGTTGCCGAAct > 1:1938314/1‑35 (MQ=255) cAAAAAGAACAGCCGGAAGCCTTTGTTGCCGAAct > 1:16975430/1‑35 (MQ=255) aaaacccccCAGCCGGAAGCCTTTGTTGCCGAAct > 1:18699186‑M1/10‑35 (MQ=255) aaaaaccccCAGCCGGAAGACTTTGTTGCCGAAct > 1:10958569‑M1/10‑35 (MQ=255) aaaaccccCAGCCGGAAGCCTTTGTTGCCGAActc > 1:10478704‑M1/9‑35 (MQ=255) aaaaccccCAGCCGGAAGCCTTTGTTGCCGAActc > 1:10554707‑M1/9‑35 (MQ=255) aaaaccccCAGCCGGAAGCATTTGTTGCCGAActc > 1:4014834‑M1/9‑35 (MQ=255) aaaaaGAACAGCCGGAAGCCTTTGTTGCCGAActc > 1:2267481/1‑35 (MQ=255) aaaaaGAACAGCCGGAAGCCTTTGTTGCCGAActc > 1:5123120/1‑35 (MQ=255) aaaccccCAGCCGGAAGCCTTTGTTGCCGAActct > 1:8190845‑M1/8‑35 (MQ=255) aaaaGAACAGCCGGAAGCCTTTGTTGCCGAActct > 1:5777105/1‑35 (MQ=255) aaaaGAACAGCCGGAAGCCTTTGTTGCCGAActct > 1:9735720/1‑35 (MQ=255) aaaaGAACAGCCGGAAGCCTTTGTTGCCGAActct > 1:14334632/1‑35 (MQ=255) aaaGACCAGCCGGAAGCCTTTGTTGCCGAACTCtt < 1:7345010/35‑1 (MQ=255) aaaGAACAGCCCGAAGCCTTTGTTGCCGAACTCtt > 1:11558625/1‑35 (MQ=255) cccccCAGCCGGAAGCCTTTGTTGCCGAACTCttt > 1:6171822‑M1/6‑35 (MQ=255) cccccCAGCCGGAAGCCTTTGTTGCCGAACTCttt > 1:11798468‑M1/6‑35 (MQ=255) cccccCAGCCGGAAGCCTTTGTTGCCGAACTCttt > 1:18428014‑M1/6‑35 (MQ=255) cccccCAGCCGGAAGCCTTTGTTGCCGAACTCttt > 1:8425348‑M1/6‑35 (MQ=255) accccCAGCCGGAAGCCTTTGTTGCCGAACTCttt > 1:6635426‑M1/6‑35 (MQ=255) aaGAACAGCCGGAAGCCTTTGTTGCCGAACTCttt > 1:14699803/1‑35 (MQ=255) ccccCAGCCGGAAGCCTTTGTTGCCGAACTCTTTg > 1:1100226‑M1/5‑35 (MQ=255) ccccCAGCCGGAAGCCTTTGTTGCCGAACTCTTTg > 1:20074789‑M1/5‑35 (MQ=255) ccccCAGCCGGAAGCCTTTGTTGCAGAACTCTTTg > 1:19560510‑M1/5‑35 (MQ=255) nccCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGa > 1:4861133‑M1/4‑35 (MQ=255) gAACAGCCGGAAGCCTTTGTTGCCGAACTCTTTGa > 1:8249124/1‑35 (MQ=255) gAACAGCCGCAAGCCTTTGTTGCCGAACTCTTTGa > 1:19120644/1‑35 (MQ=255) cccCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGa > 1:12228793‑M1/4‑35 (MQ=255) cccCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGa > 1:17677181‑M1/4‑35 (MQ=255) aaCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGaa > 1:13393126/1‑35 (MQ=255) aaCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGaa > 1:3283941/1‑35 (MQ=255) aaCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGaa > 1:17553993/1‑35 (MQ=255) cCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAAc > 1:12301482‑M1/2‑35 (MQ=255) cCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAAc > 1:13143798‑M1/2‑35 (MQ=255) cCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAAc > 1:19893287‑M1/2‑35 (MQ=255) aCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAAc > 1:4245168/1‑35 (MQ=255) CAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACa < 1:11384898‑M1/35‑1 (MQ=255) CAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACa < 1:18896467‑M1/35‑1 (MQ=255) CAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACa > 1:4829462‑M1/1‑35 (MQ=255) CAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACa < 1:3896765‑M1/35‑1 (MQ=255) | AACGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACA > REL606/3092292‑3092360 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |