New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 413197 = | 80 (0.780) | 16 (0.210) | 3/36 | NT | 19.4% | coding (93/492 nt) | yajQ | nucleotide‑binding protein |
? | REL606 | 3219746 = | 73 (0.950) | coding (344/477 nt) | agaB | N‑acetylgalactosamine‑specific enzyme IIB component of PTS |
GGCGTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/413236‑413197 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggaagGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCGA > REL606/3219746‑3219779 GGCGTCGTTCAGCTCAAATGAGGCTTCAACGTTAC < 1:10009952/35‑1 GGCGTCGTTCAGCTCAAATGAGGCTTCAACGTTAC < 1:6828322/35‑1 GGCGTCGTTCAGCTCAAATGAGGCTTCAACGTTAC > 1:20377742/1‑35 GCGTCGTTCAGCTCAAATGAGGCTTCAACGTTACG > 1:12515849/1‑35 GCGTCGTTCAGCTCAAATGAGGCTTCAACGTTACG > 1:19230667/1‑35 GCGTCGTTCAGCTCAAATGAGGCTTCAACGTTACG < 1:11264928/35‑1 CGTCGTTCAGCTCAAATGAGGCTTCAACGTTACGG < 1:13860242/35‑1 CGTCGTTCAGCTCAAATGAGGCTTCAACGTTACGG < 1:17656966/35‑1 CGTCGTTCAGCTCAAATGAGGCTTCAACGTTACGG < 1:2549730/35‑1 GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGg > 1:728056/1‑34 GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA > 1:20441014/1‑35 GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA > 1:19631072/1‑35 GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA > 1:5503895/1‑35 GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA > 1:18813106/1‑35 GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA > 1:6236883/1‑35 GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA > 1:18595208/1‑35 GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA > 1:18139695/1‑35 GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA > 1:6808967/1‑35 GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA > 1:17378990/1‑35 GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA < 1:13981464/35‑1 GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA > 1:11693040/1‑35 GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA < 1:12877836/35‑1 TCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAA > 1:15275241/1‑35 TCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAA < 1:3603280/35‑1 TCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAA < 1:4079767/35‑1 TCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAA > 1:17190156/1‑35 TCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAA > 1:6840031/1‑35 CGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAG < 1:19399977/35‑1 CGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAG < 1:11662839/35‑1 CGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAG < 1:19717935/35‑1 CGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAG > 1:15307153/1‑35 GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG > 1:1955612/1‑35 GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG > 1:5347550/1‑35 GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG > 1:12547257/1‑35 GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG > 1:17425403/1‑35 GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG > 1:930617/1‑35 GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG > 1:8469359/1‑35 GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG > 1:8656915/1‑35 GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG > 1:5766279/1‑35 GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG > 1:1375836/1‑35 TTCAGCTCAAATGAGGCTTCAACGTTACGGAAGGc > 1:9198114/1‑34 TTCAGCTCAAATGAGGCTTCAACGTTACGGAAGGG > 1:7434785/1‑35 TTCAGCTCAAATGAGGCTTCAACGTTACGGAAGGG > 1:20351795/1‑35 CAGCTCAAATGAGGCTTCAACGTTACGGAAGGcga > 1:15843176/1‑32 CAGCTCAAATGAGGCTTCAACGTTACGGAAGGGca > 1:14799893/1‑33 CAGCTCAAATGAGGCTTCAACGTTACGGAAGGGAA > 1:2203118/1‑35 AGCTCAAATGAGGCTTCAACGTTACGGAAGGGCAA > 1:15950669/1‑35 AGCTCAAATGAGGCTTCAACGTTACGGAAGGGAAA > 1:8046914/1‑35 AGCTCAAATGAGGCTTCAACGTTACGGAAGGCAAA > 1:11051676/1‑35 GCTCAAATGAGGCTTCAACGTTACGGAAGGGGAAA > 1:14642558/1‑35 GCTCAAATGAGGCTTCAACGTTACGGAAGGGAAAA > 1:10720094/1‑35 GCTCAAATGAGGCTTCAACGTTACGGAAGGGAAAA > 1:15468086/1‑35 CTCAAATGAGGCTTCAACGTTACGGAAGGGGAAAc > 1:20187243/1‑34 CTCAAATGAGGCTTCAACGTTACGGAAGGGCAAAA > 1:10848508/1‑35 CTCAAATGAGGCTTCAACGTTACGGAAGGGCAAAA > 1:15205848/1‑35 CTCAAATGAGGCTTCAACGTTACGGAAGGGAAAAc > 1:5165975/1‑34 CTCAAATGAGGCTTCAACGTTACGGAAGGGAAAAA > 1:6795188/1‑35 CTCAAATGAGGCTTCAACGTTACGGAAGGGAAAAA > 1:10504521/1‑35 TCAAATGAGGCTTCAACGTTACGGAAGGGGAAAAa > 1:18841827/1‑34 TCAAATGAGGCTTCAACGTTACGGAAGGGAAAAAc > 1:12516152/1‑34 TCAAATGAGGCTTCAACGTTACGGAAGGGAAAAAa > 1:3294799/1‑34 TCAAATGAGGCTTCAACGTTACGGAAGGGAAAAAG > 1:1150538/1‑35 CAAATGAGGCTTCAACGTTACGGAAGGGAAAAcag > 1:2117581/1‑32 AAATGAGGCTTCAACGTTACGGAAGGGAAAAAagg > 1:16901973/1‑32 AAATGAGGCTTCAACGTTACGGAAGGGAAAAAaag > 1:3005434/1‑32 CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT < 1:5916252/35‑1 CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT > 1:7285139/1‑35 CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT < 1:4743684/35‑1 CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT < 1:4338940/35‑1 CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT > 1:8783138/1‑35 CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT > 1:11468339/1‑35 CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT > 1:19202480/1‑35 CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT > 1:11761956/1‑35 GGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTATG < 1:13827298/35‑1 GAAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGT < 1:3873023/35‑1 GAAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGT > 1:7321634/1‑35 GAAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGT > 1:20398023/1‑35 GAAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGT < 1:17314860/35‑1 AAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTC < 1:8389287/35‑1 AAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTC < 1:9767783/35‑1 AAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTC > 1:2566234/1‑35 AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG < 1:10888011/35‑1 AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG > 1:4160364/1‑35 AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG < 1:7774996/35‑1 AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG < 1:3694095/35‑1 AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG < 1:3592286/35‑1 AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG > 1:11156731/1‑35 AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG > 1:2158770/1‑35 AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG < 1:914101/35‑1 AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG > 1:13678101/1‑35 AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG > 1:16182304/1‑35 GGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCGA > 1:8587758/1‑35 GGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCGA > 1:15299185/1‑35 GGCGTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/413236‑413197 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggaagGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCGA > REL606/3219746‑3219779 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |