New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2532852 =62 (0.600)3 (0.040) 3/40 NT 4.7% coding (127/2007 nt) hyfR DNA‑binding transcriptional activator, formate sensing
?REL606 4530131 = 69 (0.810)coding (410/903 nt) fimH minor component of type 1 fimbriae

Only 100 of 130 total aligned reads displayed.

TAAGGCGTCTTTATTACGCGCCTTCATCCCGCTGCCGCCGCCGTTCAGCCCGGTACAACTTATTGAACT  >  REL606/2532818‑2532886
                                  |                                  
tAAGGCGTCTTTATTACGCGCCTTCATCCCGCTgc                                    <  1:10265969/35‑1 (MQ=255)
tAAGGCGTCTTTATTACGCGCCTTCATCCCGCTgc                                    >  1:8573075/1‑35 (MQ=255)
tAAGGCGTCTTTATTACGCGCCTTCATCCCGCTgc                                    >  1:15960191/1‑35 (MQ=255)
tAAGGCGTCTTTATTACGCGCCTTCATCCCGCTgc                                    <  1:2244122/35‑1 (MQ=255)
tAAGGCGTCTTTATTACGCGCCTTCATCACGCTgc                                    <  1:13892060/35‑1 (MQ=255)
gcaattaatgagccagctttaatcgcccccccgcc                                    >  1:5574841‑M1/35‑35 (MQ=255)
gcaattaatgagccagctttaatcgcccccccgcc                                    >  1:9214707‑M1/35‑35 (MQ=255)
gcaattaatgagccagctttaatcgcccccccgcc                                    <  1:20233775‑M1/1‑1 (MQ=255)
gcaattaatgagccagctttaatcgcccccccgcc                                    <  1:6451277‑M1/1‑1 (MQ=255)
 caattaatgagccagctttaatcgcccccccgccc                                   <  1:3200481‑M1/2‑1 (MQ=255)
 caattaatgagccagctttaatcgcccccccgccc                                   <  1:5178215‑M1/2‑1 (MQ=255)
 caattaatgagccagctttaatcgcccccccgccc                                   >  1:20171663‑M1/34‑35 (MQ=255)
 aaGGCGTCTTTATTACGCGCCTTCATCCCGCTgcc                                   <  1:12451879/35‑1 (MQ=255)
 aaGGCGTCTTTATTACGCGCCTTCATCCCGCTgcc                                   >  1:8057049/1‑35 (MQ=255)
 aaGGCGTCTTTATTACGCGCCTTCATCCCGCTgcc                                   <  1:14215132/35‑1 (MQ=255)
 aaGGCGTCTTTATTACGCGCCTTCATCCCGCTgcc                                   >  1:16956533/1‑35 (MQ=255)
  aattaatgagccagctttaatcgcccccccgcccg                                  >  1:3534207‑M1/33‑35 (MQ=255)
  aattaatgagccagctttaatcgcccccccgcccg                                  >  1:6782857‑M1/33‑35 (MQ=255)
  aattaatgagccagctttaatcgcccccccgcccg                                  <  1:16560927‑M1/3‑1 (MQ=255)
  aattaatgagccagctttaatcgcccccccgcccg                                  <  1:9061370‑M1/3‑1 (MQ=255)
  aattaatgagccagctttaatcgcccccccgcccg                                  <  1:18886377‑M1/3‑1 (MQ=255)
  aGGCGTCTTTATTACGCGCCTTCATCCCGCTgccg                                  >  1:19724706/1‑35 (MQ=255)
  aGGCGTCTTTATTACGCGCCTTCATCCCGCTgccg                                  >  1:9530870/1‑35 (MQ=255)
   ggCGTCTTTATTACGCGCCTTCATCCCGCTgccgc                                 >  1:12023423/1‑35 (MQ=255)
    gCGTCTTTATTACGCGCCTTCATCCCGCTgccgcc                                >  1:3934010/1‑35 (MQ=255)
    gCGTCTTTATTACGCGCCTTCATCCCGCTgccgcc                                <  1:17097528/35‑1 (MQ=255)
     cGTCTTTATTACGCGCCTTCATCCCGCTgccgccg                               >  1:18569932/1‑35 (MQ=255)
     cGTCTTTATTACGCGCCTTCATCCCGCTgccgccg                               >  1:19816839/1‑35 (MQ=255)
     cGTCTTTATTACGCGCCTTCATCCCGCTgccgccg                               >  1:16167038/1‑35 (MQ=255)
     cGTCTTTATTACGCGCCTTCATCCCGCTgccgccg                               >  1:15131161/1‑35 (MQ=255)
      gTCTTTATTACGCGCCTTCATCCCGCTgccgccgc                              >  1:7595626/1‑35 (MQ=255)
       tCTTTATTACGCGCCTTCATCCCGCTgccgccgcc                             >  1:10703951/1‑35 (MQ=255)
       tCTTTATTACGCGCCTTCATCCCGCTgccgccgcc                             >  1:5388403/1‑35 (MQ=255)
        cTTTATTACGCGCCTTCATCCCGCTGccgccgccg                            >  1:16579261/1‑35 (MQ=255)
        cTTTATTACGCGCCTTCATCCCGCTGccgccgccg                            >  1:8787334/1‑35 (MQ=255)
         tttATTACGCGCCTTCATCCCGCTGCCGCCGCCGt                           >  1:5787667/1‑35 (MQ=255)
         tttATTACGCGCCTTCATCCCGCTGCCGCCGCCGt                           >  1:4157612/1‑35 (MQ=255)
         tttATTACGCGCCTTCATCCCGCTGCCGCCGACGt                           >  1:19686138/1‑35 (MQ=255)
          ttattaCGCGCCTTCATCCCGCTGCCGCCGCCGtt                          >  1:6560290/1‑35 (MQ=255)
          ttattaCGCGCCTTCATCCCGCTGCCGCCGCCGtt                          >  1:10028212/1‑35 (MQ=255)
           tattaCGCGCCTTCATCCCGCTGCCGCCGCCGTTc                         >  1:13374554/1‑35 (MQ=255)
            attaCGCGCCTTCATCCCGCTGCCGCCGCCGTTCa                        >  1:13921409/1‑35 (MQ=255)
             ttaCGCGCCTTCATCCCGCTGCCGCCGCCGTTCAg                       >  1:13725569/1‑35 (MQ=255)
             ttaCGCGCCTTCATCCCGCTGCCGCCGCCGTTCAg                       >  1:3169496/1‑35 (MQ=255)
             ttaCGCGCCTTCATCCCGCTGCCGCCGCCGTTCAg                       >  1:10226378/1‑35 (MQ=255)
             ttaCGCGCCTTCATCCCGCTGCCGCCGCCGTTCAg                       >  1:7105436/1‑35 (MQ=255)
             ttaCGCGCCTTCATCCCGCTGCCGCCGCCGTTCAg                       >  1:3017774/1‑35 (MQ=255)
             ttaCGCGCCTTCATCCCGCTGCCGCCGCCGTTCAg                       >  1:15723571/1‑35 (MQ=255)
             ttaCGCGCCTTCATCCCGCTGCCGCCGCCGCTccg                       >  1:1736114/1‑33 (MQ=25)
               aCGCGCCTTCATCCCGCTGCCGCCGCCGTTCAGcc                     >  1:2912359/1‑35 (MQ=255)
               aCGCGCCTTCATCCCGCTGCCGCCGCCGTTCAGcc                     >  1:8873715/1‑35 (MQ=255)
               aCGCGCCTTCATCCCGCTGCCGCCGCCGCTCAGcc                     >  1:14785661/1‑35 (MQ=255)
                 gcgcCTTCATCCCGCTGCCGCCGCCGTTCAGCCCg                   >  1:17792731/1‑35 (MQ=255)
                 gcgcCTTCATCCCGCTGCCGCCGCCGTTCAGCCCg                   >  1:15441736/1‑35 (MQ=255)
                 gcgcCTTCATCCCGCTGCCGCCGCCGTTCAGCCCg                   >  1:7777633/1‑35 (MQ=255)
                   gcCTTCATCCCGCTGCCGCCGCCGTTCAGCCCGGt                 >  1:14157359/1‑35 (MQ=255)
                    ccTTCATCCCGCTGCCGCCGCCGTTCAGCCCGGTa                >  1:5179107/1‑35 (MQ=255)
                    ccTTCATCCCGCTGCCGCCGCCGTTCAGCCCGGTa                >  1:10991584/1‑35 (MQ=255)
                     cTTCATCCCGCTGCCGCCGCCGTTCAGCCCGGTAc               >  1:17243922/1‑35 (MQ=255)
                      tcccccccccgcCCGCCGCCGTTCAGCCCGGTACa              >  1:8961613‑M1/13‑35 (MQ=255)
                        ccccccGCGGCGGCCGCCGTTCAGCCCGGTACAAc            <  1:13598374/32‑1 (MQ=25)
                        cATCCCGCTGCCGCCGCCGTTCAGCCCGGTACAAc            >  1:4108543/1‑35 (MQ=255)
                         cccccccgcCCGCCGCCGTTCAGCCCGGTACAACt           >  1:4744017‑M1/10‑35 (MQ=255)
                         cccccGCCCCCGCCGCCGTTCAGCCCGGTACAACt           <  1:17522643/33‑1 (MQ=25)
                          ccccGCTGCCGCCGCCGTTCAGCCCGGTACAACtt          <  1:17092423/34‑1 (MQ=255)
                           cccGCTGCCGCCGCCGTTCAGCCCGGTACAACTTa         >  1:18616433/1‑35 (MQ=255)
                           cccGCTGCCGCCGCCGTTCAGCCCGGTACAACTTa         >  1:20283598/1‑35 (MQ=255)
                           cccGCTGCCGCCGCCGTTCAGCCCGGTACAACTTa         >  1:15559195/1‑35 (MQ=255)
                           cccGCTGCCGCCGCCGTTCAGCCCGGTACAACTTa         >  1:8381240/1‑35 (MQ=255)
                           cccGCTGCCGCCGCCGTTCAGCCCGGTACAACCTa         >  1:1454842/1‑35 (MQ=255)
                           cccGCTGCCGCCGCCGTTCAGCCCGGGACAACTTa         >  1:12371961/1‑35 (MQ=255)
                           cccGCCCCCCCCGCCGTTCAGCCCGGTACAACTTa         <  1:10550893/35‑1 (MQ=25)
                            ccccccCCGCCGCCGTTCAGCCCGGTACAACTTAt        >  1:13811607‑M1/7‑35 (MQ=255)
                            ccGCTGCCGCCGCCGTTCAGCCCTGTACAACTTAt        >  1:5131537/1‑35 (MQ=255)
                            ccGCTGCCGCCGCCGTTCAGCCCGGTACAACTTAt        >  1:9640948/1‑35 (MQ=255)
                            ccGCTGCCGCCGCCGTTCAGCCCGGTACAACTTAt        >  1:15361897/1‑35 (MQ=255)
                             ccctcCCGCCGCCGTTCAGCCCGGTACAACTTAtt       >  1:11302816‑M1/6‑35 (MQ=255)
                             cGCTGCCGCCGCCGTTCAGCCCGGTACAACTTAtt       >  1:17398926/1‑35 (MQ=255)
                              gCTGCCGCCGCCGTTCAGCCCGGTACAACTTATTg      >  1:2558941/1‑35 (MQ=255)
                               ctcCCGCCGCCGTTCAGCCCGGTACAACTTATTGa     >  1:6671856‑M1/4‑35 (MQ=255)
                               cccCCGCCGCCGTTCAGCCCGGTACAACTTATTGa     >  1:5901981‑M1/4‑35 (MQ=255)
                               cTGCCGCCGCCGTTCAGCCTGGTACAACTTATTGa     >  1:2674770/1‑35 (MQ=255)
                               cTGCCGCCGCCGTTCAGCCCGGTACAACTTAttta     >  1:3077882/1‑33 (MQ=255)
                               cTGCCGCCGCCGTTCAGCCCGGTACAACTTATTGa     >  1:6777149/1‑35 (MQ=255)
                               cTGCCGCCGCCGTTCAGCCCGGTACAACTTATTGa     >  1:20365126/1‑35 (MQ=255)
                                tcCCCCCGCCGTTCAGCCCGGTACAACTTATTGaa    >  1:4892402‑M1/3‑35 (MQ=255)
                                tGCCGCCGCCGTTCAGCCCGGTACAACTTATTGaa    >  1:4932134/1‑35 (MQ=255)
                                gcCCGCCGCCGTTCAGCCCGGTACAACTTATTGaa    >  1:796138‑M1/3‑35 (MQ=255)
                                cgccaccgccGTTCAGCCCGGTACAACTTATTGaa    <  1:8044196/34‑1 (MQ=255)
                                ccCCGCCGCCGTTCAGCCCGGTACAACTTATTGaa    >  1:15367478‑M1/3‑35 (MQ=255)
                                ccCCGCCGCCGTTCAGCCCGGTACAACTTATTGaa    >  1:15850381‑M1/3‑35 (MQ=255)
                                ccCCCCCGCCGTTCAGCCCGGTACAACTTATTGaa    >  1:7744493‑M1/3‑35 (MQ=255)
                                 gccgccgccGTTCAGCCCGGTACAACTTATTGAAc   >  1:8585193/1‑35 (MQ=255)
                                 gccgccgccGTTCAGCCCGGTACAACTTATTGAAc   >  1:17930300/1‑35 (MQ=255)
                                  CCGCCGCCGTTCAGCCCGGTACAACTTATTGAACt  <  1:3043629‑M1/35‑1 (MQ=255)
                                  CCGCCGCCGTTCAGCCCGGTACAACTTATTGAACt  >  1:13338423‑M1/1‑35 (MQ=255)
                                  CCGCCGCCGTTCAGCCCGGTACAACTTATTGAACt  >  1:16450042‑M1/1‑35 (MQ=255)
                                  CCGCCGCCGTTCAGCCCGGTACAACTTATTGAACt  <  1:18768531‑M1/35‑1 (MQ=255)
                                  CCGCCGCCGTTCAGCCCGGTACAACTTATTGAACt  >  1:6114685‑M1/1‑35 (MQ=255)
                                  CCCCCGCCGTTCAGCCCGGTACAACTTATTGAACt  >  1:1939768‑M1/1‑35 (MQ=255)
                                  |                                  
TAAGGCGTCTTTATTACGCGCCTTCATCCCGCTGCCGCCGCCGTTCAGCCCGGTACAACTTATTGAACT  >  REL606/2532818‑2532886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.