New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 842815109 (1.060)4 (0.040) 3/44 NT 4.8% intergenic (‑93/‑260) ybiF/ompX threonine and homoserine efflux system/outer membrane protein X
?REL606 3607355 = 58 (0.620)coding (503/2076 nt) yhjG predicted outer membrane biogenesis protein

Only 100 of 183 total aligned reads displayed.

ATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACTAAAATGCGCCAGGATTGATGGAAT  >  REL606/842781‑842849
                                  |                                  
aTGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC                                    >  1:10061141‑M1/1‑35 (MQ=255)
aTGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC                                    <  1:686562‑M1/35‑1 (MQ=255)
 tGCTGGTTGAGCATTTGTTGAAAAAATTTTccccc                                   <  1:15935774/35‑1 (MQ=255)
 tGCTGGTTGAGCATTTGTTGAAAAAATTTTccccc                                   >  1:1820158/1‑35 (MQ=255)
 tGCTGGTTGAGCATTTGTTGAAAAAATTTTccccc                                   <  1:4754310/35‑1 (MQ=255)
 tGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCCa                                   <  1:15556376‑M1/35‑2 (MQ=255)
  gCTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCg                                  >  1:6043243/1‑35 (MQ=255)
   cTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGt                                 <  1:18707533/35‑1 (MQ=255)
   cTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGt                                 >  1:14616921/1‑35 (MQ=255)
   cTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGt                                 <  1:445929/35‑1 (MQ=255)
   cTGGTTCAGCATTTGTTGAAAAAATTTTCCCCCGt                                 >  1:4929253/1‑35 (MQ=255)
    tGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGtt                                >  1:19076401/1‑35 (MQ=255)
    tGGTTGAGCATTTGTTGAAAAAATTTTCACCCGtt                                <  1:4434430/35‑1 (MQ=255)
     ggTTGAGCATTTGTTGAAAAAATTTTCCCCCGttt                               >  1:4153680/1‑35 (MQ=255)
     ggTTGAGCATTTGTTGAAAAAATTTTCCCCCGttt                               >  1:2875203/1‑35 (MQ=255)
     ggTTGAGCATTTGTTGAAAAAATTTTCCCCCGttt                               <  1:18922542/35‑1 (MQ=255)
      gTTGAGCATTTGTTGAAAAAATTTTCCCCCGtttt                              <  1:15770814/35‑1 (MQ=255)
       ttGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTg                             <  1:13352231/35‑1 (MQ=255)
       ttGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTg                             >  1:18586294/1‑35 (MQ=255)
        tGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGa                            <  1:14164995/35‑1 (MQ=255)
        tGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGa                            >  1:19717392/1‑35 (MQ=255)
        tGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGa                            >  1:18113326/1‑35 (MQ=255)
        tGAGCATTTGTCGAAAAAATTTTCCCCCGTTTTGa                            >  1:12238676/1‑35 (MQ=255)
         gAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGAc                           >  1:15882594/1‑35 (MQ=255)
          aGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACt                          <  1:10067899/35‑1 (MQ=255)
          aGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACt                          >  1:17176843/1‑35 (MQ=255)
          aGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACt                          <  1:11427058/35‑1 (MQ=255)
          aGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACt                          >  1:8658883/1‑35 (MQ=255)
          aGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACt                          <  1:11848748/35‑1 (MQ=255)
          aGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACt                          >  1:8464780/1‑35 (MQ=255)
            cATTTGTTTAAAAAATTTTCCCCCGTTTTGACTaa                        >  1:19250188/1‑35 (MQ=255)
             aTTTGTTGAAAAAATTTTCCCCCGTTTTGACTaaa                       <  1:14679886/35‑1 (MQ=255)
             aTTTGTTGAAAAAATTTTCCCCCGTTTTGACTaaa                       >  1:103345/1‑35 (MQ=255)
             aTTTGTTGAAAAAATTTTCCCCCGTTTTGACTaaa                       <  1:6122672/35‑1 (MQ=255)
              tttGTTGAAAAAATTTTCCCCCGTTTTGACTaaaa                      <  1:17090537/35‑1 (MQ=255)
              tttGTTGAAAAAATTTTCCCCCGTTTTGACTaaaa                      <  1:13275291/35‑1 (MQ=255)
              tttGTTGAAAAAATTTTCCCCCGTTTTGACTaaaa                      <  1:5868297/35‑1 (MQ=255)
              tttGTTGAAAAAATTTTCCCCCGTTTTGACTaaaa                      >  1:8346396/1‑35 (MQ=255)
               ttgttgAAAAAATTTTCCCCCGTTTTGACTAAAAt                     >  1:535375/1‑35 (MQ=255)
               ttgttgAAAAAATTTTCCCACGTTTTGACTAAAAt                     <  1:11239144/35‑1 (MQ=255)
                tgttgAAAAAATTTTCCCCCGTTTTGACTAAAATg                    >  1:9119722/1‑35 (MQ=255)
                tgttgAAAAAATTTTCCCCCGTTTTGACTAAAATg                    <  1:374107/35‑1 (MQ=255)
                tgttgAAAAAATTTTCCCCCGTTTTGACTAAAATg                    >  1:15592929/1‑35 (MQ=255)
                 gttgAAAAAATTTTCCCCCGTTTTGACTAAAATgc                   >  1:2116094/1‑35 (MQ=255)
                 gttgAAAAAATTTTCCCCCGTTTTGACTAAAATgc                   >  1:11411615/1‑35 (MQ=255)
                  ttgAAAAAATTTTCCCCCGTTTTGACTAAAATgcg                  >  1:8991741/1‑35 (MQ=255)
                  ttgAAAAAATTTTCCCCCGTTTTGACTAAAATgcg                  <  1:4845360/35‑1 (MQ=255)
                   tgAAAAAATTTTCCCCCGTTTTGACTAAAATgcgc                 <  1:6689951/35‑1 (MQ=255)
                   tgAAAAAATTTTCCCCCGTTTTGACTAAAATgcgc                 >  1:566747/1‑35 (MQ=255)
                   tgAAAAAATTTTCCCCCGTTTTGACTAAAATgcgc                 <  1:12319258/35‑1 (MQ=255)
                   tgAAAAAATTTTCCCCCGTTTTGACTAAAATgcgc                 >  1:19477859/1‑35 (MQ=255)
                   tgAAAAAATTTTCCCCCGTTTTGACTAAAATgcgc                 >  1:14738832/1‑35 (MQ=255)
                   tgAAAAAATTTTCCCCCGTTTTGACTAAAATgcgc                 <  1:15324133/35‑1 (MQ=255)
                    gAAAAAATTTTCCCGCGTTTTGACTAAAATGCGcc                <  1:5623833/35‑1 (MQ=255)
                    gAAAAAATTTTCCCCCGTTTTGACTAAAATGCGcc                <  1:18857241/35‑1 (MQ=255)
                    gAAAAAATTTTCCCCCGTTTTGACTAAAATGCGcc                >  1:257059/1‑35 (MQ=255)
                    gAAAAAATTTTCCCCCGTTTTGACTAAAATGCGcc                >  1:14474966/1‑35 (MQ=255)
                     aaaaaaTTTTCCCCagccgaaacgaccatgccgac               <  1:1645952‑M1/35‑22 (MQ=255)
                     aaaaaaTTTTCCCCCGTTTTGACTAAAATgcgcaa               >  1:17992441/1‑33 (MQ=255)
                     aaaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCa               <  1:16801039/35‑1 (MQ=255)
                     aaaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCa               <  1:15285411/35‑1 (MQ=255)
                     aaaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCa               >  1:17403802/1‑35 (MQ=255)
                      aaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCAg              <  1:4530754/35‑1 (MQ=255)
                      aaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCAg              <  1:8271522/35‑1 (MQ=255)
                      aaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCAg              <  1:6297936/35‑1 (MQ=255)
                      aaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCAg              >  1:17662845/1‑35 (MQ=255)
                      aaaaaTTTTCCCCCGTTTTCACTAAAATGCGCCAg              >  1:15724371/1‑35 (MQ=255)
                       aaaaTTTTCCCCCGTTTTGACTAAAATGCGCCAgg             >  1:3399657/1‑35 (MQ=255)
                       aaaaTTTTCCCCCGTTTTGACTAAAATGCGCCAgg             <  1:7868414/35‑1 (MQ=255)
                       aaaaTTTTCCCCAGTTTTGACTAAAATGCGCCAgg             <  1:13415148/35‑1 (MQ=255)
                         aaTTTTCCCCCGTTTTGACTAAAATGCGCCAGGAt           <  1:7162563/35‑1 (MQ=255)
                         aaTTTTCCCCCGTTTTGACTAAAATGCGCCAGGAt           >  1:14586399/1‑35 (MQ=255)
                           ttttCCCCCGTTTTGAGTAAAATGCGCCAGGATTg         <  1:8703803/35‑1 (MQ=255)
                           ttttCCCCCGTTTTGACTAAAATGCGCCAGGATTg         <  1:7460254/35‑1 (MQ=255)
                           ttttCCCCCGTTTTGACTAAAATGCGCCAGGATTg         >  1:9817367/1‑35 (MQ=255)
                           ttttCCCCCGTTTTGACTAAAATGCGCCAGGATTg         >  1:20567267/1‑35 (MQ=255)
                            tttCCCCCGTTTTGACTAAAATGCGCCAGGATTGa        >  1:18216705/1‑35 (MQ=255)
                            tttCCCCCGTTTTGACTAAAATGCGCCAGGATTGa        >  1:2626875/1‑35 (MQ=255)
                            tttCCCCCGTTTTGACTAAAATGCGCCAGGATTGa        >  1:4200218/1‑35 (MQ=255)
                              tCCCCagccgaaacgaccatgccgacggctttgca      <  1:3195943‑M1/35‑31 (MQ=255)
                              tCCCCCGTTTTGACTAAAATGCGCCAGGATTGATg      <  1:7409197/35‑1 (MQ=255)
                               cccccGTTTTGACTAAAATGCGCCAGGATTGATgg     >  1:4300787/1‑35 (MQ=255)
                               cccccGTTTTGACTAAAATGCGCCAGGATTGATgg     <  1:19305988/35‑1 (MQ=255)
                               ccccagccgaaacgaccatgccgacggctttgcat     <  1:6014140‑M1/35‑32 (MQ=255)
                               ccccagccgaaacgaccatgccgacggctttgcat     <  1:3606323‑M1/35‑32 (MQ=255)
                               cccacGTTTTGACTAAAATGCGCCAGGATTGATgg     <  1:18676435/35‑1 (MQ=255)
                                ccccGTTTTGACTAAAATGCGCCAGGATTGATGGa    <  1:5398406/35‑1 (MQ=255)
                                ccccGTTTTGACTAAAATGCGCCAGGATTGATGGa    >  1:9373677/1‑35 (MQ=255)
                                 cccGTTTTGACTAAAATGCGCCAGGATTGATGGaa   >  1:3312349/1‑35 (MQ=255)
                                 cccGTTTTGACTAAAATGCGCCAGGATTGATGGaa   <  1:12887011/35‑1 (MQ=255)
                                 cccGTTTTGACTAAAATGCGCCAGGATTGATGGaa   <  1:19468075/35‑1 (MQ=255)
                                 ccagccgaaacgaccatgccgacggctttgcattc   <  1:15140136‑M1/35‑34 (MQ=255)
                                 ccagccgaaacgaccatgccgacggctttgcattc   >  1:12172021‑M1/1‑2 (MQ=255)
                                 ccacccgaaacgaccatgccgacggctttgcattc   <  1:4286379‑M1/35‑34 (MQ=255)
                                  ccGTTTTGACTAAAATGCGCCAGGATTGATGGAAt  <  1:15420116/35‑1 (MQ=255)
                                  ccGTTTTGACTAAAATGCGCCAGGATTGATGGAAt  <  1:18295130/35‑1 (MQ=255)
                                  ccGTTTTGACTAAAATGCGCCAGGATTGATGGAAt  >  1:20061701/1‑35 (MQ=255)
                                  cagccgaaacgaccatgccgacggctttgcattcg  >  1:10730477‑M1/1‑1 (MQ=255)
                                  cagccgaaacgaccatgccgacggctttgcattcg  <  1:16149704‑M1/35‑35 (MQ=255)
                                  cagccgaaacgaccatgccgacggctttgcattcg  >  1:16024010‑M1/1‑1 (MQ=255)
                                  |                                  
ATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACTAAAATGCGCCAGGATTGATGGAAT  >  REL606/842781‑842849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.