Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 9,972 | T→G | 40.1% | N174T (AAC→ACC) | yaaH ← | conserved inner membrane protein associated with acetate transport |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 9,972 | 0 | T→G | 40.1% | 230.1 ‑1.9 ‑0.0 | 165 | N174T (AAC→ACC) | yaaH | conserved inner membrane protein associated with acetate transport |
Reads supporting (aligned to +/- strand): new base (31/35): ref base (58/41): total (89/76) | ||||||||||
Fisher's exact test strand distribution p-value = 1.54e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.51e-01 |
Only 100 of 179 total aligned reads displayed.
ACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCACT > REL606/9938‑10006 | aCCAATCGGCATAACGGTGCGACCAAACTGCTCGt > 1:7502530/1‑35 (MQ=255) aCCAATCGGCAGAACGGTGCGACCAAACTGCTCGt < 1:16609582/35‑1 (MQ=255) aCCAATCGGCAGAACGGTGCGACCAAACTGCTCGt < 1:3975010/35‑1 (MQ=255) aCCAATCGGCAGAACGGTGCGACCAAACTGCTCGt > 1:11934010/1‑35 (MQ=255) aCCAATCGGCAGAACGGTGCGACCAAACTGCTCGt < 1:7924306/35‑1 (MQ=255) aCCAATCGGCAGAACGGTGCGACCAAACTGCTCGt < 1:8491930/35‑1 (MQ=255) ccAATCGGCAGAACGGTGCGACCAAACTGCTCGtt < 1:5205696/35‑1 (MQ=255) ccAATCGGCAGAACGGTGCGACCAAACTGCTCGtt < 1:6768819/35‑1 (MQ=255) cAATCGGCAGAACGGTGCGACCAAACTGCTCGTTc < 1:7083706/35‑1 (MQ=255) cAATCGGCAGAACGGTGCGACCAAACTGCTCGTTc < 1:9186253/35‑1 (MQ=255) cAATCGGCAGAACGGTGCGACCAAACTGCTCGTTc > 1:12074713/1‑35 (MQ=255) cAATCGGCAGAACGGTGCGACCAAACTGCTCGGTc < 1:1252286/35‑1 (MQ=255) aaTCGGCAGAACGGTGCGACCAAACTGCTCGTTCa > 1:10948095/1‑35 (MQ=255) aaTCGGCAGAACGGTGCGACCAAACTGCTCGTTCa > 1:13727092/1‑35 (MQ=255) aaTCGGCAGAACGGTGCGACCAAACTGCTCGTTCa > 1:15237997/1‑35 (MQ=255) aaTCGGCAGAACGGTGCGACCAAACTGCTCGGTCa < 1:10076875/35‑1 (MQ=255) aTCGGCAGAACGGTGCGACCAAACTGCTCGTTCAg < 1:2927952/35‑1 (MQ=255) aTCGGCAGAACGGTGCGACCAAACTGCTCGTTCAg < 1:12746351/35‑1 (MQ=255) aTCGGCAGAACGGTGCGACCAAACTGCTCGGTCAg < 1:14739259/35‑1 (MQ=255) tCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGt > 1:18768618/1‑35 (MQ=255) tCGGCAGAACGGTGCGACCAAACTGCTCGGTCAGt < 1:10335872/35‑1 (MQ=255) cGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTa < 1:2876113/35‑1 (MQ=255) cGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTa < 1:13516901/35‑1 (MQ=255) cGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTa > 1:13199134/1‑35 (MQ=255) cGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTa > 1:17918566/1‑35 (MQ=255) ggCAGAACGGTGCGACCAAACTGCTCGTTCAGTAc < 1:9417143/35‑1 (MQ=255) ggCAGAACGGTGCGACCAAACTGCTCGGTCAGTAc > 1:1113033/1‑35 (MQ=255) gCAGAACGGTGCGACCAAACTGCTCGGTCAGTACt > 1:6525198/1‑35 (MQ=255) gCAGAACGGTGCGACCAAACTGCTCGGTCAGTACt < 1:14564899/35‑1 (MQ=255) gCAGAACGGTGCGACCAAACTGCTCGGTCAGTACt < 1:8384632/35‑1 (MQ=255) gCAGAACCGTGCGACCAAACTGCTCGTTCAGTACt > 1:979829/1‑35 (MQ=255) cAGAACGGTGCGACCAAACTGCTCGTTCAGTACtt > 1:4285625/1‑35 (MQ=255) cAGAACGGTGCGACCAAACTGCTCGTTCAGTACtt < 1:11562181/35‑1 (MQ=255) cAGAACGGTGCGACCAAACTGCTCGTTCAGTACtt < 1:8747597/35‑1 (MQ=255) cAGAACGGTGCGACCAAACTGCTCGGTCAGTACtt > 1:14818196/1‑35 (MQ=255) cAGAACGGTGCGACCAAACTGCTCGGTCAGTACtt > 1:16710861/1‑35 (MQ=255) aGAACGGTGCGACCAAACTGCTCGTTCAGTACTTc > 1:18889197/1‑35 (MQ=255) aGAACGGTGCGACCAAACTGCTCGTTCAGTACTTc > 1:18426722/1‑35 (MQ=255) aGAACGGTGCGACCAAACTGCTCGTTCAGTACTTc > 1:16948897/1‑35 (MQ=255) gAACGGTGCGACCAAACTGCTCGTTCAGGACTTCa < 1:6595246/35‑1 (MQ=255) gAACGGTGCGACCAAACTGCTCGGTCAGTACTTCa < 1:3285465/35‑1 (MQ=255) gAACGGTGCGACCAAACTGCTCGGTCAGTACTTCa > 1:3400671/1‑35 (MQ=255) gAACGGTGCGACCAAACTGCTCGGTCAGTACTTCa < 1:12346924/35‑1 (MQ=255) aaCGGTGCGACCAAACTGCTCGTTCAGTACTTCAc < 1:19638790/35‑1 (MQ=255) aaCGGTGCGACCAAACTGCTCGTTCAGTACTTCAc > 1:11713919/1‑35 (MQ=255) aaCGGTGCGACCAAACTGCTCGTTCAGTACTTCAc > 1:4255913/1‑35 (MQ=255) aaCGGTGCGACCAAACTGCTCGGTCAGTACTTCAc < 1:15128092/35‑1 (MQ=255) aaCGGTGCGACCAAACTGCTCGGTCAGTACTTCAc < 1:17947564/35‑1 (MQ=255) aCGGTGCGACAAAACTGCTCGTTCAGTACTTCAcc < 1:2287872/35‑1 (MQ=255) cGGTGCGACCAAACTGCTCGTTCAGTACTTCAccc > 1:606555/1‑35 (MQ=255) ggTGCGACCAAACTGCTCGTTCAGTACTTCACCCa > 1:8995436/1‑35 (MQ=255) ggTGCGACCAAACTGCTCGGTCAGTACTTAACCCa < 1:10516658/35‑1 (MQ=25) gTGCGACCAAACTGCTCGGTCAGTACTTCACCCAt < 1:5471665/35‑1 (MQ=255) tGCGACCAAACTGCTCGGTCAGTACTTCACCCATc > 1:16017513/1‑35 (MQ=255) tGCGACCAAACTGCTCGGTCAGTACTTCACCCATc > 1:20302485/1‑35 (MQ=255) tGCGACAAAACTGCTCGTTCAGTACTTCACCCATc < 1:18356781/35‑1 (MQ=255) gCGACCAAACTGCTCGTTCAGTACTTCACCCATCg > 1:7698771/1‑35 (MQ=255) gCGACCAAACTGCTCGTTCAGTACTTCACCCATCg > 1:1128250/1‑35 (MQ=255) gCGACCAAACTGCTCGGTCAGTACTTCACCCATCg > 1:3907893/1‑35 (MQ=255) ngACCAAACTGCTCGTTCAGTACTTCACCCATCGc > 1:12024584/2‑35 (MQ=255) cGACCAAACTGCTCGTTCAGTACTTCACCCATCGc > 1:17445731/1‑35 (MQ=255) cGACCAAACTGCTCGTTCAGTACTTCACCCATCGc > 1:16141884/1‑35 (MQ=255) cGACCAAACTGCTCGGTCAGTACTTCACCCATCGc > 1:6677627/1‑35 (MQ=255) gACCAAACTGCTCGTTCAGTACTTCACCCATCGcc > 1:20203112/1‑35 (MQ=255) gACCAAACTGCTCGTTCAGTACTTCACCCATCGcc < 1:11314962/35‑1 (MQ=255) gACCAAACTGCTCGTTCAGTACTTCACCCATCGcc > 1:13995770/1‑35 (MQ=255) aCCAAACTGCTCGTTCAGTACTTCACCCATCGCCa < 1:1366581/35‑1 (MQ=255) aCCAAACTGCTCGGTCAGTACTTCACCCATCGCCa > 1:14325220/1‑35 (MQ=255) aCCAAACTGCTCGGTCAGTACTTCACCCATCGCCa < 1:11193559/35‑1 (MQ=255) aCCAAACTGCTAGGTCAGTACTTCACCCATCGCCa < 1:19957053/35‑1 (MQ=37) ccAAACTGCTCGTTCAGTACTTCACCCATCGCCag < 1:15408761/35‑1 (MQ=255) ccAAACTGCTCGGTCAGTACTTCACACATCGCCag < 1:8319223/35‑1 (MQ=37) cAAACTGCTCGTTCAGTACTTCACCCATCGCCaga > 1:20306749/1‑35 (MQ=255) cAAACTGCTCGGTCAGTACTTCCCCCATCGCCaga < 1:16066579/35‑1 (MQ=37) cAAACTGCTCGGTCAGTACTTCACCCATCGCCaga < 1:19193766/35‑1 (MQ=255) cAAACTGCTCGGTCAGTACTTCACACATCGCCaga < 1:8951380/35‑1 (MQ=37) aaaCTGCTCGTTCAGTACTTCACCCATCGCCagat > 1:10651505/1‑35 (MQ=255) aaaCTGCTCGTTCAGTACTTCACCCATCGCCagat < 1:18135006/35‑1 (MQ=255) aaaCTGCTCGGTCAGTACTTCACCCATCGCCagat < 1:10032715/35‑1 (MQ=255) aaCTGCTCGTTCAGTACTTCACCCATCGCCagata > 1:10270588/1‑35 (MQ=255) cTGCTCGTTCAGTACTTCACCCATCGCCagataga > 1:3258690/1‑35 (MQ=255) cTGCTCGTTCAGTACTTCACCCATCGCCagataga > 1:7568738/1‑35 (MQ=255) cTGCTCGGTCAGTACTTCACCCATCGCCagataga > 1:5589467/1‑35 (MQ=255) cTGCTCGGTCAGTACTTCACCCATCGCCagataga > 1:12859707/1‑35 (MQ=255) cTGCTCGGTCAGTACTTCACCCATCGCCagataga < 1:6859610/35‑1 (MQ=255) tGCTCGGTCAGTACTTCACCCATCGCCagatagat < 1:1142913/35‑1 (MQ=255) gCTCGTTCAGTACTTCACCCATCGCCAGATAGAtt > 1:17024870/1‑35 (MQ=255) gCTCGTTCAGTACTTCACCCATCGCCAGATAGAtt < 1:17617832/35‑1 (MQ=255) gCTCGTTCAGTACTTCACCCATCGCCAGATAGAtt < 1:4469249/35‑1 (MQ=255) gCTCGTTCAGTACTTCACCCATCGCCAGATAGAtt < 1:7299896/35‑1 (MQ=255) cTCGGTCAGTACTTCACCCATCGCCAGATAGATTg > 1:19498524/1‑35 (MQ=255) cTCGGTCAGTACTTCACCCATCGCCAGATAGATTg < 1:2620136/35‑1 (MQ=255) tCGTTCAGTACTTCACCCATCGCCAGATAGATTGc < 1:3841129/35‑1 (MQ=255) tCGTTCAGTACTTCACCCATCGCCAGATAGATTGc > 1:5073203/1‑35 (MQ=255) cGTTCAGTACTTCACCCATCGCCAGATAGATTGCa < 1:8335424/35‑1 (MQ=255) cGTTCAGTACTTCACCCATCGCCAGATAGATTGCa < 1:3581123/35‑1 (MQ=255) cGTTCAGTACTTCACCCATCGCCAGATAGATTGCa < 1:18636572/35‑1 (MQ=255) gTTCAGTACTTCACCCATCGCCAGATAGATTGCAc > 1:3519382/1‑35 (MQ=255) ttCAGTACTTCACCCATCGCCAGATAGATTGCACt < 1:19410937/35‑1 (MQ=255) ttCAGTACTTCACCCATCGCCAGATAGATTGCACt > 1:18602946/1‑35 (MQ=255) | ACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCACT > REL606/9938‑10006 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |