Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,462,320 IS150 (–) +3 bp 90.4% intergenic (‑82/‑257) mokB ← / → trg regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)66 (0.700) 36/44 NT 89.1% noncoding (1/1443 nt) IS150 repeat region
?REL606 1462320 = 7 (0.090)intergenic (‑82/‑259) mokB/trg regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor
* ? REL606 = 666130NA (NA)66 (0.640) 36/48 NT 89.2% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 1462322 7 (0.080)intergenic (‑84/‑257) mokB/trg regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor

Only 100 of 201 total aligned reads displayed.

ATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGAC  >  REL606/1462288‑1462356
                                  |                                  
atttcatcgtccaacaaaatgggtgcagtacaGGc                                    >  1:16241921‑M2/33‑35 (MQ=255)
atttcatcgtccaacaaaatgggtgcagtacaGGc                                    >  1:526751‑M2/33‑35 (MQ=255)
aTTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGc                                    <  1:9009818/35‑1 (MQ=255)
 tttcatagtccaacaaaatgggtgcagtacaGGCa                                   <  1:13543637‑M2/4‑1 (MQ=255)
  ttcatcgtccaacaaaatgggtgcagtacaGGCAc                                  >  1:1787087‑M2/31‑35 (MQ=255)
  tCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCtg                                  <  1:14278990‑M2/35‑3 (MQ=255)
  tCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCtg                                  <  1:9499400‑M2/35‑3 (MQ=255)
   cccGTTTAGCCTGAAAACAGAAAGTCTCAGGCAcc                                 <  1:10241519/35‑1 (MQ=255)
   cccGGTTAGCCTGAAAACAGAAAGTCTCAGGCtgt                                 <  1:3527717‑M2/35‑4 (MQ=255)
   cccGGTTAGCCTGAAAACAGAAAGTCTCAGGCtgt                                 <  1:2334417‑M2/35‑4 (MQ=255)
   cccGGTTAGCCTGAAAACAGAAAGTCTCAGGCtgt                                 >  1:16783535‑M2/1‑32 (MQ=255)
    ccGGTTAGCCTGAAAACAGAAAGTCTCAGGCtgta                                >  1:13659137‑M2/1‑31 (MQ=255)
    catcgtccaacaaaatgggtgcagttcaGGCAccc                                <  1:6664886‑M2/7‑1 (MQ=255)
    catcgtccaacaaaatgggtgcagtacaGGCAccc                                <  1:2525105‑M2/7‑1 (MQ=255)
     atcgtccaacaaaatgggtgcagtacaGGCACCCg                               >  1:19097388‑M2/28‑35 (MQ=255)
      tcgtccaacaaaatgggtgcagtacaGGCACCCGc                              <  1:19731984‑M2/9‑1 (MQ=255)
      ggTTAGCCTGAAAACAGAAAGTCTCAGGCtggact                              <  1:18869807‑M2/35‑7 (MQ=255)
       gTTAGCCTGAAAACAGAAAGTCTCAGGCtgtactg                             <  1:9128899‑M2/35‑8 (MQ=255)
       gTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCa                             <  1:16657951/35‑1 (MQ=255)
       cgtccaacaaaatgggtgcagtacaGGCACCCGCa                             <  1:5047936‑M2/10‑1 (MQ=255)
        ttAGCCTGAAACCAGAAAGTCTCAGGCtgtactga                            >  1:17514435‑M2/1‑27 (MQ=255)
        ttAGCCTGAAAACAGAAAGTCTCAGGCtgtactga                            >  1:5798230‑M2/1‑27 (MQ=255)
        ttAGCCTGAAAACAGAAAGTCTCAGGCtgtactga                            <  1:3111534‑M2/35‑9 (MQ=255)
        ttAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAg                            <  1:14570304/35‑1 (MQ=255)
        gtccaacaaaatgggtgcagtacaGGCACCCGCAg                            >  1:13022892‑M2/25‑35 (MQ=255)
        gtccaacaaaatgggtgcagtacaGGCACCCGCAg                            >  1:176300‑M2/25‑35 (MQ=255)
         tAGCCTGAAAACAGAAAGTCTCAGGCtgtactgac                           >  1:4809770‑M2/1‑26 (MQ=255)
         tAGCCTAAAAACAGAAAGTCTCAGGCtgtactgac                           >  1:512217‑M2/1‑26 (MQ=255)
          ccaacaaaatgggtgcagtacaGGCACCCGCAGGc                          >  1:11395936‑M2/23‑35 (MQ=255)
           gCCTGAAAACAGAAAGTCTCAGGCtgtactgaccc                         <  1:12248921‑M2/35‑12 (MQ=255)
           gCCTGAAAACAGAAAGTCTCAGGCtgtactgaccc                         >  1:15212178‑M2/1‑24 (MQ=255)
           caacaaaatgggtgcagtacaGGCACCCGCAGGCa                         >  1:16083710‑M2/22‑35 (MQ=255)
           caacaaaatgggtgcagtacaGGCACCCGCAGGCa                         <  1:1502576‑M2/14‑1 (MQ=255)
           caacaaaatgggtgcagtacaGGCACCCGCAGGCa                         >  1:7058757‑M2/22‑35 (MQ=255)
            ccTGAAAACAGAAAGTCTCAGGCtgtactgacccc                        <  1:7989826‑M2/35‑13 (MQ=255)
            aacaaaatgggtgcagtacaGGCACCCGCAGGCAt                        <  1:3311998‑M2/15‑1 (MQ=255)
             cTGAAAACAGAAAGTCTCAGGCtggactgacccca                       <  1:10586241‑M2/35‑14 (MQ=255)
             cTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATc                       >  1:1989502/1‑35 (MQ=255)
             acaaaatgggtgcagtacaGGCACCCGCAGGCATc                       <  1:3568065‑M2/16‑1 (MQ=255)
             acaaaatgggtgcagtacaGGCACCCGCAGGCATc                       >  1:17567007‑M2/20‑35 (MQ=255)
             acaaaatgggtgcagtacaGGCACCAGCAGGCATc                       <  1:20131869‑M2/16‑1 (MQ=255)
              caaaatgggtgcagtacaGGCACCCGCAGGCATcc                      <  1:6104209‑M2/17‑1 (MQ=255)
               gAAAACAGAAAGTCTCAGGCtgtactgaccccaaa                     <  1:10923099‑M2/35‑16 (MQ=255)
               gAAAACAGAAAGTCTCAGGCtgtactgaccccaaa                     <  1:4007113‑M2/35‑16 (MQ=255)
               aaaatgggtgcagtacaGGCACCCGCAGGCATCCt                     <  1:4229211‑M2/18‑1 (MQ=255)
               aaaatgggtgcagtacaGGCACCCGCAGGCATCCt                     <  1:7394245‑M2/18‑1 (MQ=255)
               aaaatgggtgcagtacaGGCACCCGCAGGCATCCt                     >  1:11882041‑M2/18‑35 (MQ=255)
               aaaatgggtgcagtacaGGCACCCGCAGGCATCCt                     >  1:9805231‑M2/18‑35 (MQ=255)
                aaaaCAGAAAGTCTCAGGCtgtactgaccccaaaa                    >  1:582742‑M2/1‑19 (MQ=255)
                 aaaCAGAAAGTCTCAGGCtgtactgaccccaaaaa                   >  1:15740983‑M2/1‑18 (MQ=255)
                 aaaCAGAAAGTCTCAGGCtgtactgaccccaaaaa                   >  1:7659166‑M2/1‑18 (MQ=255)
                  atgggtgcagtacaGGCACCCGCATGCATCCTATg                  >  1:16172177‑M2/15‑35 (MQ=255)
                  atgggtgcagtacaGGCACCCGCAGGCATCCTATg                  >  1:14679160‑M2/15‑35 (MQ=255)
                  aaCAGAAAGTCTCAGGCtgtactgacccaaaaaag                  >  1:1900911‑M2/1‑17 (MQ=255)
                   tgggtgcagtacaGGCACCCGCAGGCATCCTATGa                 >  1:12744485‑M2/14‑35 (MQ=255)
                   tgggtgcagtacaGGCACCCGCAGGCATCCTATGa                 <  1:11041915‑M2/22‑1 (MQ=255)
                    gggtgcagtacaGGCCCCCGCAGGCATCCTATGAg                <  1:815503‑M2/23‑1 (MQ=255)
                    gggtgcagtacaGGCACCCGCAGGCATCCTATGAg                >  1:4712252‑M2/13‑35 (MQ=255)
                    cAGAAAGTCTCAGGCtgtactgaccccaaaaagtt                >  1:7470145‑M2/1‑15 (MQ=255)
                     ggtgcagtacaGGCACCCGCAGGCATCCTATGAgg               >  1:8602682‑M2/12‑35 (MQ=255)
                     ggtgcagtacaGGCACCCGCAGGCATCCTATGAgg               <  1:10038697‑M2/24‑1 (MQ=255)
                     aGAAAGTCTCAGGCtgtactgaccccaaaaagttg               >  1:2620828‑M2/1‑14 (MQ=255)
                      gtgcagtacaGGCACCCGCAGGCATCCTATGAGGt              >  1:12458113‑M2/11‑35 (MQ=255)
                       tgcagtacaGGCACCCGCAGGCATCCTATGAGGtt             >  1:9208401‑M2/10‑35 (MQ=255)
                       tgcagtacaGGCACCCGCAGGCATCCTATGAGGtt             <  1:18085834‑M2/26‑1 (MQ=255)
                       aaaGTCTCAGGCtgtactgaccccaaaaagttgga             >  1:1089536‑M2/1‑12 (MQ=255)
                        gcagtacaGGCACCCGCAGGCATCCTATGAGGttt            <  1:2728830‑M2/27‑1 (MQ=255)
                        gcagtacaGGCACCCGCAGGCATCCTATGAGGttt            <  1:3010175‑M2/27‑1 (MQ=255)
                        aaGTCTCAGGCtgtactgaccccaaaaagttggac            >  1:4429264‑M2/1‑11 (MQ=255)
                         cagtacaGGCACCCGCAGGCATCCTATGAGGTTTc           <  1:15847504‑M2/28‑1 (MQ=255)
                         aGTCTCAGGCtgtactgaccccaaaaagttggaca           <  1:19517273‑M2/35‑26 (MQ=255)
                          agtacaGGCACCCGCAGGCATCCTATGAGGTTTcc          >  1:12093406‑M2/7‑35 (MQ=255)
                          agtacaGGCACCCGCAGGCATCCTATGAGGTTTcc          >  1:19685279‑M2/7‑35 (MQ=255)
                           tctcAGGCACCCGCAGGCATCCTATGAGGTTTCCt         <  1:10390511/35‑1 (MQ=255)
                           gtacaggCtgtactgaccccaaaaagttggacagt         >  1:18323231‑M2/4‑8 (MQ=255)
                           gtacaGGCCCCCGCAGGCATCCTATGAGGTTTCCt         <  1:8354529‑M2/30‑1 (MQ=255)
                           gtacaGGCACCCGCAGGCATCCTATGAGGTTTCCt         <  1:11663071‑M2/30‑1 (MQ=255)
                           gtacaGGCACCCGCAGGCATCCTATGAGGTTTCCt         <  1:13678876‑M2/30‑1 (MQ=255)
                            tacaGGCACCCGCAGGCATCCTATGAGGTTTCCtt        <  1:10430288‑M2/31‑1 (MQ=255)
                            tacaGGCACCCGCAGGCATCCTATGAGGTTTCCtt        <  1:5612291‑M2/31‑1 (MQ=255)
                            tacaGGCACCCGCAGGCATCCTATGAGGTTTCCtt        >  1:1935356‑M2/5‑35 (MQ=255)
                            tacaGGCACCCGCAGGCATCCTATGAGGTTTCCtt        <  1:15255429‑M2/31‑1 (MQ=255)
                            tacaGGCACCCGCAGGCATCCTATGAGGTTTCCtt        <  1:6308772‑M2/31‑1 (MQ=255)
                            tacaGGCACACGCAGGCATCCTATGAGGTTTCCtt        <  1:18596494‑M2/31‑1 (MQ=255)
                            ctcAGGCtgtactgaccccaaaaagttggacagtt        >  1:2796319‑M2/1‑7 (MQ=255)
                             tcAGGCtgtactgaccccaaaaagttggacagtta       >  1:8012463‑M2/1‑6 (MQ=255)
                             acaGGCACCCGCAGGCATCCTATGAGGTTTGCTTa       >  1:2466412‑M2/4‑35 (MQ=255)
                             acaGGCACCCGCAGGCATCCTATGAGGTTTCCTTa       >  1:6978422‑M2/4‑35 (MQ=255)
                             acaGGCACCCGCAGGCATCCTATGAGGTTTCCTTa       <  1:11935460‑M2/32‑1 (MQ=255)
                             acaGGCACCCGCAGGCATCCTATGAGGTTTCATTa       <  1:15796537‑M2/32‑1 (MQ=255)
                             acaGGCACCCGCAGGCATCCTATGAGGTTTCATTa       <  1:4731506‑M2/32‑1 (MQ=255)
                              caGGCACCCGCAGGCATCCTATGAGGTTTCCTTAg      >  1:11312806‑M2/3‑35 (MQ=255)
                              caGGCACCCGCAGGCATCCTATGAGGTTTCCTTAg      <  1:17001939‑M2/33‑1 (MQ=255)
                              cAGGCtgtactgaccccaaaaagttggacagttaa      >  1:17364076‑M2/1‑5 (MQ=255)
                               aGGCACCCGCAGGCATCCTATGAGGTTTCCTTAgg     <  1:14467506‑M2/34‑1 (MQ=255)
                                ggCACCCGCAGGCATCCTATGAGGTTTCCTTAggg    <  1:1296318/35‑1 (MQ=255)
                                 gCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGa   >  1:8214271/1‑35 (MQ=255)
                                 gCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGa   <  1:5010907/35‑1 (MQ=255)
                                  cACCCGCAGGCATCCTATGAGGTTTCCTTAGGGAc  <  1:6827705/35‑1 (MQ=255)
                                  cACCCGCAGGCATCCTATGAGGTTTCCTTAGGGAc  >  1:20472883/1‑35 (MQ=255)
                                  |                                  
ATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGAC  >  REL606/1462288‑1462356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.