New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 118158088 (0.860)8 (0.100) 3/38 NT 11.2% coding (919/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase
?REL606 2872317 = 57 (0.700)coding (1204/1263 nt) lysA diaminopimelate decarboxylase, PLP‑binding

Only 100 of 147 total aligned reads displayed.

CTGGTGGTGGAACCGACGCTGCAAACCACCCGCGATCCAGACATTTACGCTATTGGCGACTGCGCGTC  >  REL606/1181547‑1181614
                                 |                                  
cTGGTGGTGGAACCGACGCTGCAAACCACCCGCGa                                   >  1:4602370/1‑35 (MQ=255)
   gtggtggAACCGACTCTGCAAACCACCCGCGATcc                                >  1:11748824/1‑35 (MQ=255)
   gtggtggAACCGACGCTGCAAACCACCCGCGATcc                                >  1:2919427/1‑35 (MQ=255)
   ggggtggCCCCGACGCTGCAAACCACCCGCGATcc                                <  1:13756543/33‑1 (MQ=25)
    tggtggAACCGACGCTGCAAACCACCCGCGATCCa                               >  1:11542939/1‑35 (MQ=255)
    tggtggAACCGACGCTGCAAACCACCCGCGATCCa                               >  1:3647337/1‑35 (MQ=255)
     ggtggAACCGACGCTGCAAACCACCCGCGATCCAg                              >  1:18617497/1‑35 (MQ=255)
     gggggACCCGACGCTGCAAACCACCCGCGATCCAg                              <  1:20184105/32‑1 (MQ=37)
       tggAACCGACGCTGCAAACCACCCGCGATCCAGAc                            >  1:19167210/1‑35 (MQ=255)
       tggAACCGACGCTGCAAACCACCCGCGATCCAGAc                            >  1:2877003/1‑35 (MQ=255)
        ggAACCGACGCTGCAAACCACCCGCGATCCAGACa                           >  1:6233982/1‑35 (MQ=255)
         gAACCGACGCTGCAAACCACCCGCGATCCAGACAt                          >  1:19349279/1‑35 (MQ=255)
         gAACCGACGCTGCAAACCACCCGCGATCCAGACAt                          >  1:2510700/1‑35 (MQ=255)
         cccccGACGCTGCAAACCACCCGCGATCCAGACAt                          <  1:3745814/32‑1 (MQ=255)
          ccccGACGCTGCAAACCACCCGCGATCCAGACAtt                         <  1:4073149/33‑1 (MQ=255)
           cccGACGCTGCAAACCACCCGCGATCCAGACAttt                        <  1:9522970/34‑1 (MQ=255)
           cccGACGCTGCAAACCACCCGCGATCCAGACAttt                        <  1:13961725/34‑1 (MQ=255)
           ccagACGCTGCAAACCACCCGCAATCCAGACAttt                        <  1:930642/32‑1 (MQ=37)
            ccGACGCTGCAAACCACCCGCGATCCAGACATTTa                       >  1:9805568/1‑35 (MQ=255)
            ccGACGCTGCAAACCACCCGCGATCCAGACATTTa                       >  1:10201916/1‑35 (MQ=255)
            ccGACGCTGCAAACCACCCGCGATCCAGACATTTa                       >  1:7418331/1‑35 (MQ=255)
             tgACGCTGCAAACCACCCGCGATCCAGACATTTAc                      <  1:6183880/34‑1 (MQ=255)
             cGACGCTGCAAACCACCCGCGATCCAGACATTTAc                      <  1:1585265/35‑1 (MQ=255)
             cGACGCTGCAAACCACCCGCGATCCAGACATTTAc                      >  1:14247859/1‑35 (MQ=255)
             cGACGCTGCAAACCACCCGCGATCCAGACATTTAc                      <  1:10812228/35‑1 (MQ=255)
              gACGCTGCAAACCACCCGCGATCCAGACATTTACg                     >  1:11472600/1‑35 (MQ=255)
              gACGCTGCAAACCACCCGCGATCCAGACATTTACg                     <  1:5861686/35‑1 (MQ=255)
              gACGCTGCAAACCACCCGCGATCCAGACATTTACg                     >  1:3962933/1‑35 (MQ=255)
               gcGCTGCAAACCACCCGCGATCCAGACATTTACGc                    <  1:2603917/34‑1 (MQ=255)
               aCGCTGCAAACCACCCGCGATCCAGACATTTACGc                    >  1:15228375/1‑35 (MQ=255)
               aCGCTGCAAACCACCCGCGATCCAGACATTTACGc                    <  1:1932135/35‑1 (MQ=255)
               aCGCTGCAAACCACCCGCGATCCAGACATTTACGc                    <  1:3384224/35‑1 (MQ=255)
               aCGCTGCAAACCACCCGCGATCCAGACATTTACGc                    <  1:1570760/35‑1 (MQ=255)
               aCGCTGCAAACCACCCGCGATCCAGACATTTACGc                    <  1:15765366/35‑1 (MQ=255)
               aCGCTGCAAACCACCCGCGATCCAGACATTTACGc                    >  1:3252235/1‑35 (MQ=255)
                cccTGCAAACCCCCCGCGATCCAGACATTTACGCt                   <  1:14567321/33‑1 (MQ=38)
                 gcggCAAACCACCCGCGATCCAGACATTTACGCTa                  <  1:14993994/32‑1 (MQ=255)
                 gCTGCAAACCACCCGCGATCCAGACATTTACGCTa                  >  1:15333135/1‑35 (MQ=255)
                 gCTGCAAACCACCCGCGATCCAGACATTTACGCTa                  <  1:1642725/35‑1 (MQ=255)
                 gCTGCAAACCACCCGCGATCCAGACATTTACACTa                  >  1:17690784/1‑35 (MQ=255)
                  gggcaAACCACCCGCGcctgaccattatcaaacag                 <  1:6532756‑M1/33‑20 (MQ=255)
                  cTGCAAACCACCCGCGATCCAGACATTTACGCTAt                 <  1:18103758/35‑1 (MQ=255)
                  cTGCAAACCACCCGCGATCCAGACATTTACGCTAt                 >  1:19806178/1‑35 (MQ=255)
                  cTGCAAACCACCCGCGATCCAGACATTTACGCTAt                 <  1:2325686/35‑1 (MQ=255)
                  cTGCAAACCACCCGCGATCCAGACATTTACGCTAt                 >  1:1547538/1‑35 (MQ=255)
                   tGCAAACCACCCGCGATCCAGACATTTACGCTAtt                <  1:6725615/35‑1 (MQ=255)
                   tGCAAACCACCCGCGATCCAGACATTTACGCTAtt                >  1:14202161/1‑35 (MQ=255)
                   tGCAAACCACCCGCGATCCAGACATTTACGCTAtt                >  1:16499723/1‑35 (MQ=255)
                   tGCAAACCACCCGCGATCCAGACATTTACGCTAtt                >  1:4391799/1‑35 (MQ=255)
                   ggcAAAACACCCGCGcctgaccattatcaaacaga                <  1:1353760‑M1/34‑21 (MQ=255)
                    gcgaaccaCCCGCGcctgaccattatcaaacagaa               <  1:5035346‑M1/32‑22 (MQ=255)
                    gCAAACCACCCGCGATCCTGACATTTACGCTATTg               >  1:228609/1‑35 (MQ=255)
                    gCAAACCACCCGCGATCCAGACATTTACGCTATTg               <  1:14371562/35‑1 (MQ=255)
                    gCAAACCACCCGCGATCCAGACATTTACGCTATTg               <  1:172017/35‑1 (MQ=255)
                    caaaaccACCCGCGcctgaccattatcaaacagaa               <  1:17137696‑M1/33‑22 (MQ=255)
                     cAAACCACCCGCGATCCAGACATTTACGCTATTgg              <  1:14851365/35‑1 (MQ=255)
                     cAAACCACCCGCGATCCAGACATTTACGCTATTgg              >  1:17176049/1‑35 (MQ=255)
                     cAAACCACCCGCGATCCAGACATTTACGCTATTgg              <  1:12325102/35‑1 (MQ=255)
                      aaaCCACCCGCGATCCAGACATTTACGCTATTGGc             <  1:18770939/35‑1 (MQ=255)
                      aaaCCACCCGCGATCCAGACATTTACGCTATTGGc             >  1:1862604/1‑35 (MQ=255)
                      aaaCCACCCGCGATCCAGACATTTACGCTATTGGc             >  1:17066858/1‑35 (MQ=255)
                      aaaCCACCCGCGATCCAGACATTTACGCTATTGGc             <  1:19521747/35‑1 (MQ=255)
                      aaaCCACCCGCGATCCAGACATTTACGCTATTGGc             <  1:12174996/35‑1 (MQ=255)
                       acccaccAGCGATCCAGACATTTACGATATTGGCg            <  1:16601970/33‑1 (MQ=21)
                       aaCCACCCGCGATCCAGACATTTACGCTATTGGCg            >  1:1994595/1‑35 (MQ=255)
                        accaccCGCGATCCAGACATTTACGCTATTGGCGa           >  1:3712384/1‑35 (MQ=255)
                        accaccCGCGATCCAGACATTTACGCTATTGGCGa           >  1:7438176/1‑35 (MQ=255)
                         ccaccCGCGcctgaccattatcaaacagaacttct          <  1:10148562‑M1/35‑27 (MQ=255)
                         ccaccCGCGATCCAGACATTTACGCTATTGGCGaa          >  1:20479905/1‑34 (MQ=255)
                          caccCGCGcctgaccattatcaaacagaacttctg         <  1:15791783‑M1/35‑28 (MQ=255)
                          caccCGCGATCCAGACATTTACGCTATTGGCGACt         <  1:16248142/35‑1 (MQ=255)
                          caccCGCGATCCAGACATTTACGCTATTGGCGACt         <  1:7690429/35‑1 (MQ=255)
                           accCGCGcctgaccattatcaaacagaacttctgg        <  1:10546972‑M1/35‑29 (MQ=255)
                           accCGCGcctgaccattatcaaacagaacttctgg        <  1:17719599‑M1/35‑29 (MQ=255)
                           accCGCGATCCAGACATTTACGCTATTGGCGaacg        >  1:16426477/1‑32 (MQ=255)
                            cccGGGATCCAGACATTTACGCTATTGGCGACTgc       <  1:8703871/35‑1 (MQ=255)
                            cccGCGcctgaccattatcaaacagaacttctggt       <  1:8525138‑M1/35‑30 (MQ=255)
                            cccGCGcctgaccattatcaaacagaacttctggt       <  1:4962095‑M1/35‑30 (MQ=255)
                            cccGCGcctgaccattatcaaacagaaattctggt       <  1:8561052‑M1/35‑30 (MQ=255)
                            cccGCGATCCAGACATTTACGCTATTGGCGACTgc       <  1:13427168/35‑1 (MQ=255)
                             ccGCGcctgaccattatcaaacagaacttctggta      <  1:8862396‑M1/35‑31 (MQ=255)
                             ccGCGcctgaccattatcaaacagaacttctggta      <  1:17786542‑M1/35‑31 (MQ=255)
                             ccGCGcctgaccattatcaaacagaacttctggta      <  1:13268672‑M1/35‑31 (MQ=255)
                              cgcgcctgaccattatcaaacagaacttctggtaa     <  1:19777637‑M1/35‑32 (MQ=255)
                              cgcgATCCAGACATTTACGCTATTGGCGACTgcgc     <  1:19485808/35‑1 (MQ=255)
                              cgcgATCCAGACATTTACGCTATTGGCGACTgcgc     <  1:15485820/35‑1 (MQ=255)
                              cgcgATCCAGACATTTACGCTATTGGCGACTgcgc     <  1:12728746/35‑1 (MQ=255)
                              cgcgATCCAGACATTTACGCTATTGGCGACTgcgc     <  1:3640838/35‑1 (MQ=255)
                               gcgcctgaccattatcaaacagaacttctggtaac    >  1:12120814‑M1/1‑3 (MQ=255)
                               gcgcctgaccattatcaaacagaacttctggtaac    <  1:10687953‑M1/35‑33 (MQ=255)
                               gcgATCCAGACATTTACGCTATTGGCGACTGcgcg    <  1:14556259/35‑1 (MQ=255)
                               gcgATCCAGACATTTACGCTATTGGCGACTGcgcg    >  1:16134692/1‑35 (MQ=255)
                                cgcctgaccattatcaaacagaacttctggtaaca   >  1:9441348‑M1/1‑2 (MQ=255)
                                cgcctgaccattatcaaacagaacttctggtaaca   <  1:17954251‑M1/35‑34 (MQ=255)
                                cgcctgaccattatcaaacagaacttctggtaaca   >  1:7817113‑M1/1‑2 (MQ=255)
                                cgcctgaccattatcaaacagaacttctggtaaca   >  1:15295502‑M1/1‑2 (MQ=255)
                                cgATCCAGACATTTACGCTATTGGCGACTGCGCGt   <  1:18873716/35‑1 (MQ=255)
                                 gcctgaccattatcaaacagaacttctggtaacag  >  1:15706322‑M1/1‑1 (MQ=255)
                                 gATCCAGACATTTACGCTATTGGCGACTGCGCGTc  <  1:18184943/35‑1 (MQ=255)
                                 gATCCAGACATTTACGCTATTGGCGACTGCGCGTc  <  1:13779934/35‑1 (MQ=255)
                                 |                                  
CTGGTGGTGGAACCGACGCTGCAAACCACCCGCGATCCAGACATTTACGCTATTGGCGACTGCGCGTC  >  REL606/1181547‑1181614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.