Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,420,709 +GA :: IS3 (+) +4 bp 14.6% intergenic (+21/‑9) ynaK → / → ECB_01341 conserved protein/hypothetical protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1420709 =60 (0.780)11 (0.120) 10/44 NT 13.0% intergenic (+21/‑12) ynaK/ECB_01341 conserved protein/hypothetical protein
?REL606 = 1443893 NA (NA)noncoding (1255/1255 nt) IS3 repeat region
* ? REL606 = 142071269 (0.810)11 (0.110) 11/46 NT 12.2% intergenic (+24/‑9) ynaK/ECB_01341 conserved protein/hypothetical protein
?REL606 1607918 = NA (NA)coding (15/1320 nt) ECB_01510 putative tail component of prophage

CAGGGATTTAAATAAATCATTTATTACAACAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1420678‑1420712
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  >  REL606/1607918‑1607951
                                                                     
CAGGGATTTAAATAAATCATTTATTACAACAGGCT                                    <  1:6681764/35‑1
CAGGGATTTAAATAAATCATTTATTACAACAGGCT                                    <  1:13249009/35‑1
CAGGGATTTAAATAAATCATTTATTACAACAGGCT                                    >  1:15606382/1‑35
        TAAATAAATCATTTATTACAACAGGCTGATCTTAC                            <  1:20108480/35‑1
         AAATAAATCATTTATTACAACAGGCTGATCTTACC                           >  1:12954301/1‑35
           ATAAATCATTTATTACAACAGGCTGATCTTACCCA                         >  1:7628271/1‑35
              AATCATTTATTACAACAGGCTGATCTTACCCAGCA                      >  1:11546969/1‑35
                 CATTTATTACAACAGGCTGATCTTACCCAGCAATA                   >  1:1871483/1‑35
                 CATTTATTACAACAGGCTGATCTTACCCAGCAATA                   <  1:6636569/35‑1
                   TTTATTACAACAGGCTGATCTTACCCAGCAATAGT                 <  1:6059269/35‑1
                    TTATTACAACAGGCTGATCTTACCCAGCAATAGTG                <  1:4018553/35‑1
                        TACAACAGGCTGATCTTACCCAGCAATAGTGGACA            <  1:7828339/35‑1
                         ACAACAGGCTGATCTTACCCAGCAATAGTGGACAC           >  1:18241532/1‑35
                            ACAGGCTGATCTTACCCAGCAATAGTGGACACGCG        <  1:13884621/35‑1
                                 CTGATCTTACCCAGCAATAGTGGACACGCTGCTAA   >  1:16409699/1‑35
                                 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAA   >  1:15459339/1‑35
                                 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAA   >  1:8421163/1‑35
                                 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAA   >  1:8677302/1‑35
                                 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAA   <  1:5149165/35‑1
                                 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAA   <  1:18167789/35‑1
                                 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAA   >  1:2872768/1‑35
                                 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAA   <  1:5480941/35‑1
                                 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAA   >  1:1889046/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCTGCTAAG  >  1:5702385/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCGGGTAAG  >  1:5203758/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  <  1:5713926/35‑1
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  >  1:6793023/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  <  1:8268982/35‑1
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  <  1:8821101/35‑1
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  <  1:8971468/35‑1
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  <  1:9902548/35‑1
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  <  1:10307756/35‑1
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  >  1:11286236/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  <  1:12022591/35‑1
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  <  1:13225826/35‑1
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  >  1:13681996/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  >  1:14045692/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  <  1:16356774/35‑1
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  >  1:16883588/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  <  1:16990722/35‑1
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  >  1:17804038/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  >  1:1825805/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  >  1:18444677/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  <  1:18905772/35‑1
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  <  1:18957966/35‑1
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  >  1:229279/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  >  1:2341735/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  >  1:2915025/1‑35
                                  TGATCTTACCCAGCAATAGTGGACACGCGGCCAAG  >  1:1056605/1‑35
                                                                     
CAGGGATTTAAATAAATCATTTATTACAACAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1420678‑1420712
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGATCTTACCCAGCAATAGTGGACACGCGGCTAAG  >  REL606/1607918‑1607951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.