New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 989609 | 56 (0.540) | 13 (0.160) | 4/38 | NT | 32.0% | coding (766/894 nt) | ycbJ | hypothetical protein |
? | REL606 | 2795469 = | 11 (0.140) | coding (831/873 nt) | ygcG | hypothetical protein |
CTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCC > REL606/2795435‑2795503 | ctctggagttacctgcaacgcgcgccagtggcggg > 1:10481470‑M2/35‑35 (MQ=255) cTGGAGGCTCAGATAGCGGCGGGGTTTGCGGCggg > 1:17715357/1‑35 (MQ=25) cTGGAGGCTCAGATAGCGGCGGATTTAGCGGCggg < 1:7980488/35‑1 (MQ=255) cTGGAGGCTCAGATAGCGGCGGATTTAGCGGCggg < 1:14738927/35‑1 (MQ=255) cTGGAGGCTCAGATAGCGGCGGATTTAGCGGCggg < 1:15652431/35‑1 (MQ=255) tctggagttacctgcaacgcgcgccagtggcgggg > 1:7944263‑M2/34‑35 (MQ=255) tctggagttacctgcaacgcgcgccagtggcgggg > 1:17102860‑M2/34‑35 (MQ=255) tGGAGGCTCAGATAGCGGCGGATTTAGCGGCgggg < 1:8528902/35‑1 (MQ=255) tGGAGGCTCAGATAGCGGCGGATTTAGCGGCgggg < 1:20272686/35‑1 (MQ=255) tGGAGGCTCAGATAGCGGCGGATTTAGCGGCgggg < 1:7312846/35‑1 (MQ=255) tGGAGGCTCAGATAGCGGCGGATTTAGCGGCgggg < 1:18805991/35‑1 (MQ=255) ggAGGCTCAGATAGCGGCGGATTTAGCGGCggggg < 1:5685321/35‑1 (MQ=255) ggAGGCTCAGATAGCGGCGGATTTAGCGGCggggg < 1:7480202/35‑1 (MQ=255) ctggagttaccttcaacgcgcgccagtggcggggg > 1:4592357‑M2/33‑35 (MQ=255) ctggagttacctgcaacgcgcgccagtggcggggg > 1:8718294‑M2/33‑35 (MQ=255) tggagttacgtgcaacgcgcgccagtggcgggggg > 1:14687469‑M2/32‑34 (MQ=255) gAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGc < 1:3743463/35‑1 (MQ=255) ggagttacctgcaacgcgcgccagtggcggGGgca > 1:13625183‑M2/31‑34 (MQ=255) ggagttacctgcaacgcgcgccagtggcggGGGCg > 1:3193225‑M2/31‑35 (MQ=255) aGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCg < 1:2714014/35‑1 (MQ=255) aGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCg < 1:754398/35‑1 (MQ=255) aGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCg < 1:13749594/35‑1 (MQ=255) gagttacctgcaacgcgcgccagtggcgggggagt > 1:17837103‑M2/30‑32 (MQ=255) gagttacctgcaacgcgcgccagtggcggGGGcgt > 1:20112009‑M2/30‑34 (MQ=255) gagttacctgcaacgcgcgccagtggcggGGGCgg > 1:256790‑M2/30‑35 (MQ=255) gagttacctgcaacgcgcgccagtggcggGGGCgg > 1:3733318‑M2/30‑35 (MQ=255) agttacctgcaacgcgcgccagtggcggGGGGGGt > 1:209421‑M2/29‑35 (MQ=255) agttacctgcaacgcgcgccagtggcggGGGCGGt > 1:9407853‑M2/29‑35 (MQ=255) gttacctgcaacgcgcgccagtggcggGGGGGgtc > 1:703186‑M2/28‑34 (MQ=255) gttacctgcaacgcgcgccagtggcggGGGCGgtg > 1:16866409‑M2/28‑34 (MQ=255) gttacctgcaacgcgcgccagtggcggGGGCGgtc > 1:18471756‑M2/28‑34 (MQ=255) gttacctgcaacgcgcgccagtggcggGGGCGgtc > 1:17744746‑M2/28‑34 (MQ=255) gttacctgcaacgcgcgccagtggcggGGGCGGtt > 1:2566668‑M2/28‑35 (MQ=255) cTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGtt < 1:4848318/35‑1 (MQ=255) cTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGtt < 1:9385236/35‑1 (MQ=255) ttacctgcaacgcgcgccagtggcggGGGCggtcc > 1:17778729‑M2/27‑33 (MQ=255) ttacctgcaacgcgcgccagtggcggGGGCggtca > 1:1318561‑M2/27‑33 (MQ=255) ttacctgcaacgcgcgccagtggcggGGGCGGttc > 1:6223488‑M2/27‑35 (MQ=255) cAGATAGCGGCGGATTTAGCGGCGGGGGCGGttct < 1:2307446/35‑1 (MQ=255) cAGATAGCGGCGGATTTAGCGGCGGGGGCGGttct < 1:19226093/35‑1 (MQ=255) acctgcaacgcgcgccagtggcggGGTCGgttctc > 1:11433879‑M2/25‑34 (MQ=255) gATAGCGGCGGATTTAGCGGCGGGGGCGGttcttc < 1:5306911/35‑1 (MQ=255) aGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTgg < 1:7751288/35‑1 (MQ=255) gcggcgGATTTAGCGGCGGGGGCGGTTCTTCTGGa < 1:11819682/35‑1 (MQ=255) cggATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTg < 1:55671/35‑1 (MQ=255) ggATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTgg < 1:7594442/35‑1 (MQ=255) aTTTAGCGGCGGGGGCGGTTCCTCTGGAGGTggcg < 1:9499221/35‑1 (MQ=255) tttAGCGGCGGGGGCGGTTCTTCTGGAGGTggcgg < 1:12921552/35‑1 (MQ=255) ttAGCGGCGGGGGCGGTTCTTCTGGAGGTggcggc < 1:9236893/35‑1 (MQ=255) aGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGgcgc < 1:6574039/35‑1 (MQ=255) cggcgtGGGCGGTTCTTCTGGAGGTGGCGGCGCAt < 1:1241056/35‑1 (MQ=255) cggcggGGGCGGTTCTTCTGGAGGTGGCGGCGCAt < 1:115498/35‑1 (MQ=255) cggcggGGGCGGTTCTTCTGGAGGTGGCGGCGCAt < 1:17202731/35‑1 (MQ=255) cggcggGGGCGGTTCTTCTGGAGGTGGCGGCGCAt < 1:19009898/35‑1 (MQ=255) tgcggGGGCGGTTATTCTGGAGGTGGCGGCGCATc < 1:11993433‑M2/30‑1 (MQ=255) gcggGGGCGGTTCTTCTGGAGGTGGCGGCGCATcc < 1:15607195‑M2/31‑1 (MQ=255) gcggGGGCGGTTCTTCTGGAGGTGGCGGCGCATcc < 1:7857409‑M2/31‑1 (MQ=255) cggGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCg < 1:17137562‑M2/32‑1 (MQ=255) cggGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCg < 1:3707507‑M2/32‑1 (MQ=255) ggGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCgg < 1:9939635‑M2/33‑1 (MQ=255) ggGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCgg < 1:2422434‑M2/33‑1 (MQ=255) gGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGc < 1:15429025‑M2/34‑1 (MQ=255) gggCGGTTCTTCTGGAGGTGGCGGCGCATCCGGcc < 1:9146515/35‑1 (MQ=255) gggCGGTTCTTCTGGAGGTGGCGGCGCATCCGGcc < 1:13241250/35‑1 (MQ=255) gggCGGTTCTTCTGGAGGTGGCGGCGCATCCGGcc < 1:18302770/35‑1 (MQ=255) gggCGGTTCTTCTGGAGGTGGCGGCGCATCCGGcc < 1:18586092/35‑1 (MQ=255) | CTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCC > REL606/2795435‑2795503 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |