New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 4551446 | NA (NA) | 9 (0.090) | 8/46 | NT | 7.0% | noncoding (768/768 nt) | IS1 | repeat region |
? | REL606 | 4560889 = | 119 (1.210) | coding (135/1590 nt) | hsdM | DNA methylase M |
ATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4551414‑4551446 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTGTCCGGTTTCTTTACACATTTTCAAAAACAGC > REL606/4560889‑4560922 ATAAAACACTATCAATAAGTTGGAGTCATTACCCT < 1:6231550/35‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACCCT < 1:19111899/35‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACCCT > 1:12358203/1‑35 ATAAAACACTATCAATAAGTTGGAGTCATTACCCT > 1:10453141/1‑35 AAAACACTATCAATAAGTTGGAGTCATTACCCTGT > 1:15714295/1‑35 AACACTATCAATAAGTTGGAGTCATTACCCTGTCC < 1:13608055/35‑1 ACTATCAATAAGTTGGAGTCATTACCCTGTCCGGT < 1:13688259/35‑1 ACTATCAATAAGTTGGAGTCATTACCCTGTCCGGT < 1:7566326/35‑1 CAATAAGTTGGAGTCATTACCCTGTCCGGTTTCTT < 1:20232665/35‑1 AGTTGGAGTCATTACCCTGTCCGGTTTCTTTACAC < 1:12150954/35‑1 GTTGGAGTCATTACCCTGTCCGGTTTCTTTACACA < 1:2175040/35‑1 TGGAGTCATTACCCTGTCCGGTTTCTTTACACATT < 1:6375011/35‑1 GGAGTCATTACCCTGTCCGGTTTCTTTACACATTT < 1:17649380/35‑1 GGAGTCATTACCCTGTCCGGTTTCTTTACACATTT > 1:2276032/1‑35 CCTGTCCGGTTTCTTTACACATTTTCAAAAACAGC < 1:1471295/35‑1 CCTGTCCGGTTTCTTTACACATTTTCAAAAACAGC > 1:18329536/1‑35 CCTGTCCGGTTTCTTTACACATTTTCAAAAACAGC > 1:6861336/1‑35 CCTGTCCGGTTTCTTTACACATTTTCAAAAACAGC < 1:8393940/35‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4551414‑4551446 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTGTCCGGTTTCTTTACACATTTTCAAAAACAGC > REL606/4560889‑4560922 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |