New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1286707 =97 (0.940)9 (0.110) 4/38 NT 10.5% intergenic (+31/‑152) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein
?REL606 = 1424360 NA (NA)coding (192/294 nt) ECB_01344 conserved hypothetical protein

GCGAATGAATATGCCGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGATGTGGCAA  >  REL606/1424339‑1424394
                     |                                  
gCGAATGAATATGCCGTGGTGGGGCGGTTTTGATc                       <  1:10842861/35‑1 (MQ=32)
gCGAATGAATATGCCGTGGTGGGGCGGTTTTGATc                       <  1:8608400/35‑1 (MQ=32)
gCGAATGAATATGCCGTGGTGGGGCGGTTTTGATc                       <  1:6075420/35‑1 (MQ=32)
 cGAATGAATATGCCGTGGTGGGGCGGTTTTGATcc                      <  1:11046730/35‑1 (MQ=35)
 cGAATGAATATGCCGTGGTGGGGCGGTTTTGATcc                      <  1:7634959/35‑1 (MQ=35)
 cGAATGAATATGCCGTGGTGGGGCGGTTTTGATcc                      <  1:19543297/35‑1 (MQ=35)
  gaatgaatATGCCGTGGTGGGGCGGTTTTGATCcg                     <  1:6599911/35‑1 (MQ=38)
  gaatgaatATGCCGTGGTGGGGCGGTTTTGATCcg                     <  1:4196077/35‑1 (MQ=38)
  gaatgaatATGCCGTGGTGGGGCGGTTTTGATCcg                     <  1:2958063/35‑1 (MQ=38)
  gaatgaatATGCCGTGGTGGGGCCGTTTTGATCcg                     <  1:17055159/35‑1 (MQ=255)
   aatgaatATGCCGTGGTGGGGCGGTTTTGATCcgc                    <  1:9969207/35‑1 (MQ=40)
   aatgaatATGCCGTGGTGGGGCGGTTTTGATCcgc                    <  1:14427526/35‑1 (MQ=40)
    atgaatATGCCGTGGTGGGGCGGTTTTGATCcgcg                   <  1:5346342/35‑1 (MQ=255)
    atgaatATGCCGTGGTGGGGCGGTTTTGATCcgcg                   <  1:19910302/35‑1 (MQ=255)
     tgaatATGCCGTTGTGGGGCGGTTTTGATCcgcgc                  <  1:10511965/35‑1 (MQ=255)
     tgaatATGCCGTGGTGGGGCGGTTTTGATCcgcgc                  <  1:8618240/35‑1 (MQ=255)
     tgaatATGCCGTGGTGGGGCGGTTTTGATCcgcgc                  <  1:20240456/35‑1 (MQ=255)
       aatATGCCGTGGTGGGGCGGTTTTGATCcgcgcgc                <  1:13340553/35‑1 (MQ=255)
       aatATGCCGTGGTGGGGCGGTTTTGATCcgcgcgc                <  1:20613811/35‑1 (MQ=255)
          atGCCGTGGTGGGGCGGTTTTGATACGCGCGCGTg             <  1:1303388/35‑1 (MQ=255)
          atGCCGTGGTGGGGCGGTTTTGATACGCGCGCGTg             <  1:18671125/35‑1 (MQ=255)
           tGCCGTGGTGGGGCGGTTTTGATCCGCGCGCGTgg            <  1:3439339/35‑1 (MQ=255)
           tGCCGTGGTGGGGCGGTTTTGATCCGCGCGCGTgg            <  1:9784779/35‑1 (MQ=255)
            gCCGTGGTGGGGCGGTTTTGATCCGCGCGCGTggg           <  1:668029/35‑1 (MQ=255)
             ccGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGa          <  1:20222223/35‑1 (MQ=255)
              cGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGAt         <  1:1343736/35‑1 (MQ=255)
              cGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGAt         <  1:8555468/35‑1 (MQ=255)
              cGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGAt         <  1:11411109/35‑1 (MQ=255)
               gtggtgGGGCGGTTTTGATCCGCGCGCGTGGGAtg        <  1:1709966/35‑1 (MQ=255)
                tggttgGGCGGTTTTTATCCGCGCGCGTGGGAtgt       >  1:13375085/1‑35 (MQ=21)
                tggtggGGCGGTTTTGATCAGCGCGCGTGGGAtgt       <  1:11933655/35‑1 (MQ=255)
                 ggtggGGCGGTTTTGATCCGCGCGCGTGGGAtgtg      <  1:13274161/35‑1 (MQ=255)
                 ggtggGGCGGTTTTGATCCGCGCGCGTGGGAtgtg      <  1:19727866/35‑1 (MQ=255)
                 ggtggGGCGGTTTTGATCCGCGCGCGTGGGAtgtg      <  1:9175902/35‑1 (MQ=255)
                   tggGGCGGTTTTGATCCGCGCGCGTGGGATGTGGc    <  1:18291649/35‑1 (MQ=255)
                    ggggCGGTTTTGATCCGCGCGAGTGGGATGTGGCa   <  1:20449654/35‑1 (MQ=255)
                     gggCGGTTTTGATCCGCGCGCGTGGGATGTGGCaa  <  1:7015570/35‑1 (MQ=255)
                     gggCGGTTTTGATCCGCGCGCGTGGGATGTGGCaa  <  1:6692303/35‑1 (MQ=255)
                     |                                  
GCGAATGAATATGCCGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGATGTGGCAA  >  REL606/1424339‑1424394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.