New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 368616056 (0.540)10 (0.160) 3/30 NT 30.3% coding (402/741 nt) yiaT hypothetical protein
?REL606 4048325 = 11 (0.170)coding (224/927 nt) yihR predicted aldose‑1‑epimerase

Only 100 of 112 total aligned reads displayed.

ATATTCCTGCCCCTGATAGCGGTAACAGCCGTTGGCGATCCGGTTCGGCCACGGAATAAGCACTTTACC  >  REL606/4048291‑4048359
                                  |                                  
atatTCCTGCCCCTGATAGCGTTAACAGCCGTTgg                                    >  1:2592505/1‑35 (MQ=255)
atatTCCTGCCCCTGATAGCGGTAACAGCCGTTgg                                    >  1:16616221/1‑35 (MQ=255)
atatTCCTGCCCCTGATAGCGGTAACAGCCGTTgg                                    >  1:6688261/1‑35 (MQ=255)
atatTCCTGCCCCTGATAGCGGTAACAGCCGTTgg                                    >  1:19956919/1‑35 (MQ=255)
atatTCCTGCCCCTGATAGCGGTAACAGCCGGTgg                                    >  1:10935261/1‑35 (MQ=255)
atatTCCTGCCCCTGATAGCGGTAACAGCCGGTgg                                    >  1:20527920/1‑35 (MQ=255)
 tatTCCTGCCCCTGATAGCGGTAACAGCCGTTGGc                                   >  1:13633181/1‑35 (MQ=255)
 tatTCCTGCCCCTGATAGCGGTAACAGCCGTTGGc                                   >  1:11604191/1‑35 (MQ=255)
  atTCCTGCCCCTGATAGCGGTAACAGCCGTTGGCg                                  >  1:14484035/1‑35 (MQ=255)
   ttCCTGCCCCTGATAGCGGTAACAGCCGTTGGCgg                                 >  1:9206489/1‑34 (MQ=255)
    tCCTGCCCCTGATAGCGGTAACAGCCGTTGGCGAt                                >  1:3985460/1‑35 (MQ=255)
    tCCTGCCCCTGATAGCGGTAACAGCCGTTGGCGAt                                >  1:5698423/1‑35 (MQ=255)
     ccTGCCCCTGATAGCGGTAACAGCCGGTGGCGATc                               >  1:2070395/1‑35 (MQ=255)
      cggCCCCTGATAGCGGTATCAGCCGTTGGCGATcc                              <  1:9927538/33‑1 (MQ=37)
      cTGCCCCTGATAGCGGTAACAGCCGTTGGCGATcc                              >  1:8710123/1‑35 (MQ=255)
        gCCCCTGATAGCGGTAACAGCCGTTGGCGATCCgg                            >  1:16134431/1‑35 (MQ=255)
         ccccTGATAGCGGTAACAGCCGTTGGCGATCCggg                           >  1:10842941/1‑34 (MQ=255)
          cccTGATAGCGGTAACAGCCGTTGGCGATCCGGtt                          >  1:10148267/1‑35 (MQ=255)
            cTGATAGCGGTAACAGCCGGTGGCGGTTCGGGTCg                        >  1:1944855/1‑35 (MQ=19)
             tGATAGCGGTAACAGCCGTTGGCGATCCGGGTCgg                       >  1:5128777/1‑35 (MQ=255)
                 cccccccccagccgttgGCGATCCGGTTCGGCCAc                   <  1:9897997‑M2/18‑1 (MQ=255)
                 cccccccccagccgttgGCGATCCGGTTCGGCCAc                   <  1:9323223‑M2/18‑1 (MQ=255)
                 cccccccccagccgttgGCGATCCGGTTCGGCCAc                   <  1:17360047‑M2/18‑1 (MQ=255)
                 cccccccccagccgttgGCGATCCGGTTCGGCCAc                   <  1:16665987‑M2/18‑1 (MQ=255)
                  gCGGTAACAGCCGTTGGCGAACCGGCTCGGCCACg                  >  1:18494765/1‑35 (MQ=37)
                  ccccccccagccgttgGCGATCCGGTTCGGCCACg                  <  1:8331632‑M2/19‑1 (MQ=255)
                  ccccccccagccgttgGCGATCCGGTTCGGCCACg                  <  1:4292959‑M2/19‑1 (MQ=255)
                  ccccccccagccgttgGCGATCCGGTTCGGCCACg                  <  1:12422903‑M2/19‑1 (MQ=255)
                   cccccccagccgttgGCGATCCGGTTCGGCCACgg                 <  1:6308722‑M2/20‑1 (MQ=255)
                   cccccccagccgttgGCGATCCGGTTCGGCCACgg                 <  1:15581129‑M2/20‑1 (MQ=255)
                   cccccccagccgttgGCGATCCGGTTCGGCCACgg                 <  1:9262051‑M2/20‑1 (MQ=255)
                   cGGTAACAGCCGTTGGCGATCCGGTTTGGCCCCgg                 >  1:9104866/1‑35 (MQ=37)
                    ggTAACAGCCGTTGGCGATCCGGGTCGGCCACGGa                >  1:15794316/1‑35 (MQ=255)
                    ccccccagccgttgGCGATCCGGTTCGGCCACGGa                <  1:14642477‑M2/21‑1 (MQ=255)
                    ccccccagccgttgGCGATCCGGTTCGGCCACGGa                <  1:17459574‑M2/21‑1 (MQ=255)
                    ccccccagccgttgGCGATCCGGTTCGGCCACGGa                <  1:7348155‑M2/21‑1 (MQ=255)
                     cccccagccgttgGCGATCCGGTTCGGCCACGGaa               <  1:11981154‑M2/22‑1 (MQ=255)
                      tAACAGCCGTTGGCGATCCGGTTCGGCCACGGAAt              >  1:17838665/1‑35 (MQ=255)
                      ccccagccgttgGCGATCCGGTTCGGCCACGGAAt              <  1:740126‑M2/23‑1 (MQ=255)
                      ccccagccgttgGCGATCCGGTTCGGCCACGGAAt              <  1:17449316‑M2/23‑1 (MQ=255)
                      ccccagccgttgGCGATCCGGTTCGGCCACGGAAt              <  1:1490911‑M2/23‑1 (MQ=255)
                      ccccagccgttgGCGATCCGGTTCGGCCACGGAAt              <  1:14186213‑M2/23‑1 (MQ=255)
                      ccccagccgttgGAGATCCGGTTCGGCCACGGAAt              <  1:20506821‑M2/23‑1 (MQ=255)
                       cccagccgttgGCGATCCGGTTCGGCCACGGAATa             <  1:17592434‑M2/24‑1 (MQ=255)
                       cccagccgttgGCGATCCGGTTCGGCCACGGAATa             <  1:1570640‑M2/24‑1 (MQ=255)
                        ccagccgttgGCGATCCGGTTCGGCCACGGAAtac            <  1:6557607‑M2/25‑2 (MQ=255)
                        ccagccgttgGCGATCCGGTTCGGCCACGGAATaa            <  1:7333455‑M2/25‑1 (MQ=255)
                        ccagccgttgGCGATCCGGTTCGGCCACGGAATaa            <  1:7588139‑M2/25‑1 (MQ=255)
                        ccagccgttgGCGATCCGGTTCGGCCACGGAATaa            <  1:19083427‑M2/25‑1 (MQ=255)
                        aCAGCCGTTGGCGATCCGGTTCGGCCACGGAATaa            >  1:11453981/1‑35 (MQ=255)
                        aCAGCCGTTGGCGATCCGGTTCGGCCACGGAATaa            >  1:16595099/1‑35 (MQ=255)
                         cagccgttgGCGATCCGGTTCGGCCACGGAATAAg           <  1:10503395‑M2/26‑1 (MQ=255)
                         cagccgttgGCGATCCGGTTCGGCCACGGAATAAg           <  1:18848524‑M2/26‑1 (MQ=255)
                         cagccgttgGCGATCCGGTTCGGCCACGGAATAAg           >  1:4800662‑M2/10‑35 (MQ=255)
                         cagccgttgGCGATCCGGTTCGGCCACGGAATAAg           >  1:13455727‑M2/10‑35 (MQ=255)
                         cagccgttgGCGATCCGGTTCGGCCACGGAAAAAg           >  1:19243771‑M2/10‑35 (MQ=255)
                         cagccgttgGCGATCCGGTTCGGCCACAGAATAAg           >  1:19968796‑M2/10‑35 (MQ=255)
                          agccgttgGCGATCCGGTTCGGCCACGGAATAAGc          >  1:18947937‑M2/9‑35 (MQ=255)
                          agccgttgGCGATCCGGTTCGGCCACGGAATAAGc          <  1:14492224‑M2/27‑1 (MQ=255)
                          agccgttgGCGATCCGGTTCGGCCACGGAATAAGc          >  1:9833637‑M2/9‑35 (MQ=255)
                          agccgttgGCGATCCGGTTCGGCCACGGAATAAGc          <  1:5952276‑M2/27‑1 (MQ=255)
                           gccgttgGCGATCCGGTTCGGCCACGGAATAAGCa         >  1:14908908‑M2/8‑35 (MQ=255)
                           gccgttgGCGATCCGGTTCGGCCACGGAATAAGCa         >  1:3738279‑M2/8‑35 (MQ=255)
                           gccgttgGCGATCCGGTTCGGCCACGGAATAAGCa         >  1:13662483‑M2/8‑35 (MQ=255)
                           gccgttgGCGATCCGGTTCGGCCACGGAATAAGCa         >  1:13290266‑M2/8‑35 (MQ=255)
                           gccgttgGCGATCCGGTTCGGCCACGGAATAAGCa         <  1:17266316‑M2/28‑1 (MQ=255)
                           gccgttgGCGATCCGGTTCGGCCACGGAATAAGCa         >  1:18049984‑M2/8‑35 (MQ=255)
                            ccgttgGCGATCCGGTTCGGCCACGGAATAAGCAc        <  1:6697236‑M2/29‑1 (MQ=255)
                            ccgttgGCGATCCGGTTCGGCCACGGAATAAGCAc        <  1:8036755‑M2/29‑1 (MQ=255)
                            ccgttgGCGATCCGGTTCGGCCACGGAATAAGCAc        >  1:16556161‑M2/7‑35 (MQ=255)
                            ccgttgGCGATCCGGTTCGGCCACGGAATAAGCAc        <  1:19379835‑M2/29‑1 (MQ=255)
                            ccgttgGCGATCCGGTTCGGCCACGGAATAAGCAc        <  1:3788909‑M2/29‑1 (MQ=255)
                            ccgttgGCGATCCGGTTCGGCCACGGAATAAGCAc        >  1:15180896‑M2/7‑35 (MQ=255)
                            ccgttgGCGATCCGGTTCGGCCACGGAATAAGCAc        <  1:13258502‑M2/29‑1 (MQ=255)
                             cgttgGCGATCCGGTTCGGCCACGGAATAAGCACt       >  1:9020058‑M2/6‑35 (MQ=255)
                             cgttgGCGATCCGGTTCGGCCACGGAATAAGCACt       >  1:19943616‑M2/6‑35 (MQ=255)
                             cgttgGCGATCAGGTTCGGCCACGGAATAAGCACt       <  1:5000502‑M2/30‑1 (MQ=255)
                              gttgGCGATCCGGTTCGGCCACGGAATAAGCACtt      <  1:6780700‑M2/31‑1 (MQ=255)
                              gttgGCGATCCGGTTCGGCCACGGAATAAGCACtt      >  1:6043797‑M2/5‑35 (MQ=255)
                              gttgGCGATCCGGTTCGGCCACGGAATAAGCACtt      >  1:19332219‑M2/5‑35 (MQ=255)
                               ttgGCGATCCGGTTCGGCCACGGAATAAGCACttt     <  1:2218291‑M2/32‑1 (MQ=255)
                               ttgGCGATCCGGTTCGGCCACGGAATAAGCACttt     <  1:6841325‑M2/32‑1 (MQ=255)
                               ttgGCGATCCGGTTCGGCCACGGAATAAGCACttt     <  1:12548570‑M2/32‑1 (MQ=255)
                               ttgGCGATCCGGTTCGGCCACGGAATAAGCACttt     <  1:2409291‑M2/32‑1 (MQ=255)
                               ttgGCGATCCGGTTCGGCCACGGAATAAGCACttt     <  1:9527211‑M2/32‑1 (MQ=255)
                               ttgGCGATCCGGTTCGGCCACGGAATAAGCACttt     >  1:7643344‑M2/4‑35 (MQ=255)
                               ttgGCGATCCGGTTCGGCCACGGAATAAGCACttt     <  1:8665287‑M2/32‑1 (MQ=255)
                               ttgGCGATCCGGTTCGGCCACGGAATAAGCACttt     <  1:18759650‑M2/32‑1 (MQ=255)
                               ttgGCGATCCGGTTAGGCCACGGAATAAGCACttt     <  1:10268056‑M2/32‑1 (MQ=255)
                                tgGCGATCCGGTTCGGCCACGGAATAAGCACTTTa    >  1:15972399‑M2/3‑35 (MQ=255)
                                tgGCGATCCGGTTCGGCCACGGAATAAGCACTTTa    >  1:966074‑M2/3‑35 (MQ=255)
                                tgGCGATCCGGTTCGGCCACGGAATAAGCACTTTa    <  1:4866715‑M2/33‑1 (MQ=255)
                                tgGCGATCCGGTTCGGCCACGGAATAAGCACTTTa    <  1:2818983‑M2/33‑1 (MQ=255)
                                 ggCGGTCCGGTTCGGCAACGGAATAAGCACTTTAc   <  1:18157569/35‑1 (MQ=37)
                                 gGCGATCCGGTTCGGCCACGGAATAAGCACTTTAc   <  1:11717393‑M2/34‑1 (MQ=255)
                                 gGCGATCCGGTTCGGCCACGGAATAAGCACTTTAc   <  1:7379728‑M2/34‑1 (MQ=255)
                                 gGCGATCCGGTTCGGCCACGGAATAAGCACTTTAc   <  1:17710129‑M2/34‑1 (MQ=255)
                                  gCGATCCGGTTCGGCCACGGAATAAGCACTTTAcc  <  1:1789139/35‑1 (MQ=255)
                                  gCGATCCGGTTCGGCCACGGAATAAGCACTTTAcc  <  1:1504326/35‑1 (MQ=255)
                                  gCGATCCGGTTCGGCCACGGAATAAGCACTTTAcc  <  1:11072848/35‑1 (MQ=255)
                                  |                                  
ATATTCCTGCCCCTGATAGCGGTAACAGCCGTTGGCGATCCGGTTCGGCCACGGAATAAGCACTTTACC  >  REL606/4048291‑4048359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.