New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 575058 = | 51 (0.500) | 11 (0.140) | 3/38 | NT | 9.8% | coding (616/1449 nt) | cusS | sensory histidine kinase in two‑component regulatory system with CusR, senses copper ions |
? | REL606 | = 2762587 | 162 (1.990) | coding (1028/1140 nt) | nlpD | predicted outer membrane lipoprotein |
TAATCAGCATCCTGATCGTCTTTATCGTACTGTTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/575096‑575058 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC < REL606/2762587‑2762554 TAATCAGCATCCTGATCGTCTTTATCGTACTGTTG > 1:18303713/1‑35 TAATCAGCATCCTGATCGTCTTTATCGTACTGTTG > 1:2167441/1‑35 TAATCAGCATCCTGATCGTCTTTATCGTACTGTTG > 1:1770531/1‑35 TAATCAGCATCCTGATCGTCTTTATCGTACTGTTG > 1:8789327/1‑35 TAATCAGCATCCTGATCGTCTTTATCGTACTGTTG > 1:6508299/1‑35 AATCAGCATCCTGATCGTCTTTATCGTACTGTTGG > 1:8519679/1‑35 AATCAGCATCCTGATCGTCTTTATCGTACTGTTGG > 1:12752906/1‑35 AATCAGCATCCTGATCGTCTTTATCGTACTGTTGG < 1:5483355/35‑1 ATCAGCATCCTGATCGTCTTTATCGTACTGTTGGC < 1:5254250/35‑1 ATCAGCATCCTGATCGTCTTTATCGTACTGTTGGC > 1:11571685/1‑35 ATCAGCATCCTGATCGTCTTTATCGTACTGTTGGC < 1:7851160/35‑1 ATCAGCATCCTGATCGTCTTTATCGTACTGTTGGC < 1:13145212/35‑1 TCAGCATCCTGATCGTCTTTATCGTACTGTTGGCG < 1:3641930/35‑1 TCAGCATCCTGATCGTCTTTATCGTACTGTTGGCG > 1:460355/1‑35 TCAGCATCCTGATCGTCTTTATCGTACTGTTGGCG > 1:13667187/1‑35 TCAGCATCCTGATCGTCTTTATCGTACTGTTGGCG > 1:7301082/1‑35 TCAGCATCCTGATCGTCTTTATCGTACTGTTGGCG < 1:12808806/35‑1 TCAGCATCCTGATCGTCTTTATCGTACTGTTGGCG < 1:12613817/35‑1 CAGCATCCTGATCGTCTTTATCGTACTGTTTGCGG > 1:18863688/1‑35 CAGCATCCTGATCGTCTTTATCGTACTGTTGGCGG < 1:2930767/35‑1 CAGCATCCTGATCGTCTTTATCGTACTGTTGGCGG < 1:16252893/35‑1 CAGCATCCTGATCGTCTTTATCGTACTGTTGGCGG > 1:19894776/1‑35 AGCATCCTGATCGTCTTTATCGTACTGTTGGCGGG > 1:9322037/1‑35 AGCATCCTGATCGTCTTTATCGTACTGTTGGCGGG > 1:17951353/1‑35 AGCATCCTGATCGTCTTTATCGTACTGTTGGCGGG > 1:1004350/1‑35 AGCATCCTGATCGTCTTTATCGTACTGTTGGCGGG > 1:10030053/1‑35 GCATCCTGATCGTCTTTATCGTACTGTTGGCGGGG > 1:4807852/1‑35 ATCCTGATCGTCTTTATCGTACTGTTGGCGGGaga > 1:19974404/1‑32 ATCCTGATCGTCTTTATCGTACTGTTGGCGGGaaa > 1:15008832/1‑32 ATCCTGATCGTCTTTATCGTACTGTTGGCGGGGCA > 1:9151553/1‑35 ATCCTGATCGTCTTTATCGTACTGTTGGCGGGGCA > 1:10272184/1‑35 TCCTGATCGTCTTTATCGTACTGTTGGCGGGGgat > 1:15367438/1‑32 TCCTGATCGTCTTTATCGTACTGTTGGCGGGGAAA > 1:9728578/1‑35 CCTGATCGTCTTTATCGTACTGTTGGCGGGGGAAA > 1:8934465/1‑35 CCTGATCGTCTTTATCGTACTGTTGGCGGGGCAAA > 1:10491564/1‑35 TGATCGTCTTTATCGTACTGTTGGCGGGGCATAAA > 1:6239564/1‑35 TGATCGTCTTTATCGTACTGTTGGCGGGGCATAAA > 1:13263930/1‑35 TGATCGTCTTTATCGTACTGTTGGCGGGGCATAAA > 1:19076177/1‑35 TGATCGTCTTTATCGTACTGTTGGCGGGGCAAAAA > 1:7617607/1‑35 TGATCGTCTTTATCGTACTGTTGGCGGGGAAAAAA > 1:13429517/1‑35 GATCGTCTTTATCGTACTGTTGGCGGGGCATAAAA > 1:8035776/1‑35 GATCGTCTTTATCGTACTGTTGGCGGGGCAAAAAA > 1:3474370/1‑35 ATCGTCTTTATCGTACTGTTGGCGGGGCATAAAAg > 1:4252622/1‑34 ATCGTCTTTATCGTACTGTTGGCGGGGAAAAAAAg > 1:13037761/1‑34 GGCGGGGCAAAAAATAGCAACCATGGGTAGCACCG > 1:5710627/1‑35 GGCGGGGCAAAAAATAGCAACCATGGGTAGCACCG < 1:6616701/35‑1 GGCGGGGCAAAAAATAGCAACCATGGGTAGCACCG < 1:950949/35‑1 GGCGGGGCAAAAAATAGCAACCATGGGTAGCACCG < 1:7741533/35‑1 gcaGGGCAAAAAATAGCAACCATGGGTAGCACCGG < 1:1958383/32‑1 GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG < 1:3751828/35‑1 GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG < 1:3677138/35‑1 GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG < 1:19350300/35‑1 GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG > 1:12546184/1‑35 GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG > 1:19621687/1‑35 GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG > 1:13546465/1‑35 GCGGGGCAAAAAATAGCAACCATGGGTAGCACCGG < 1:10809827/35‑1 CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA > 1:10081221/1‑35 CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA > 1:7286111/1‑35 CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA > 1:8572959/1‑35 CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA < 1:9467882/35‑1 CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA > 1:14313798/1‑35 CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA < 1:4747325/35‑1 CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA > 1:1477336/1‑35 CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA > 1:19884782/1‑35 CGGGGCAAAAAATAGCAACCATGGGTAGCACCGGA < 1:20087548/35‑1 GGGGCAAAAAATAGCAACCATGTGTAGCACCGGAA > 1:10813651/1‑35 GGGGCAAAAAATAGCAACCATGGGTAGCACCGGAA > 1:6071053/1‑35 GGGGCAAAAAATAGCAACCATGGGTAGCACCGGAA > 1:211843/1‑35 GGGGCAAAAAATAGCAACCATGGGTAGCACCGGAA > 1:18148696/1‑35 GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC > 1:19672488/1‑35 GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC < 1:920820/35‑1 GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC < 1:2183309/35‑1 GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC > 1:1785127/1‑35 GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC > 1:3342231/1‑35 GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC < 1:3629224/35‑1 GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC < 1:15222725/35‑1 GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC < 1:3842055/35‑1 GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC < 1:4001940/35‑1 GGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC > 1:14532419/1‑35 TAATCAGCATCCTGATCGTCTTTATCGTACTGTTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/575096‑575058 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGGCAAAAAATAGCAACCATGGGTAGCACCGGAAC < REL606/2762587‑2762554 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |