New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 326209 =90 (0.880)5 (0.050) 3/46 NT 7.2% coding (854/1887 nt) prpE predicted propionyl‑CoA synthetase with ATPase domain
?REL606 3368427 = 42 (0.430)coding (508/990 nt) rpoA DNA‑directed RNA polymerase subunit alpha

Only 100 of 175 total aligned reads displayed.

GGCGGTGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTGGGGCATTCGTATATCGTCTACGCGCCG  >  REL606/326175‑326243
                                  |                                  
ggcggTGTGTTCTTTTGTGCTTCGGATATCGGCTg                                    <  1:2665115/35‑1 (MQ=255)
ggcggTGTGTTCTTTTGTGCTTCGGATATCGGCTg                                    <  1:19251401/35‑1 (MQ=255)
attcattcggaagaagatgagcgcccaatcggccg                                    <  1:16775112‑M1/1‑1 (MQ=255)
attcattcggaagaagatgagcgcccaatcggccg                                    <  1:19133240‑M1/1‑1 (MQ=255)
 gcggTGTGTTCTTTTGTGCTTCGGATATCGGCTgg                                   <  1:13391132/35‑1 (MQ=255)
  tcattcggaagaagatgagcgcccaatcggccggg                                  <  1:18780528‑M1/3‑1 (MQ=255)
  gacctgctgtaatctgaccccgttcagCGGGTggg                                  <  1:8882106‑M1/8‑1 (MQ=255)
  gacctgctgtaatctgaccccgttcagCGGCTggg                                  <  1:4978393‑M1/8‑1 (MQ=255)
  gacctgctgtaatctgaccccgttcagCGGCTggg                                  <  1:7143198‑M1/8‑1 (MQ=255)
  cggTGTGTTCTTTTGTGCTTCGGATATCGGCTggg                                  >  1:11587789/1‑35 (MQ=255)
   ggTGTGTTCTTTTGTGCTTCGGATATCGGCTgggg                                 >  1:10215012/1‑34 (MQ=255)
   ggTGTGTTCTTTTGTGCTTCGGATATCGGCTgggg                                 >  1:15866701/1‑34 (MQ=255)
   ggTGTGTTCTTTTGTGCTTCGGATATCGGCTGggt                                 <  1:15590060/35‑1 (MQ=255)
   cattcggaagaagatgagcgcccaatcggccGggt                                 <  1:1381351‑M1/4‑1 (MQ=255)
   accttctgtaatctgaccccgttcagCGGCTGggt                                 <  1:6894330‑M1/9‑1 (MQ=255)
    gtgtgtTCTTTTGTGCTTCGGATATCGGCTGggtg                                <  1:6399422/35‑1 (MQ=255)
    gtgtgtTCTTTTGTGCTTCGGATATCGGCTGggtg                                <  1:13057429/35‑1 (MQ=255)
    cctgctgtaatctgaccccgttcagCGGctgggcg                                <  1:16580461‑M1/10‑3 (MQ=255)
    cctgctgtaatctgaccccgttcagCGGCTGggtg                                <  1:12151299‑M1/10‑1 (MQ=255)
    cctgctgtaatctgaccccgttcagCGGCTGggtg                                <  1:8290480‑M1/10‑1 (MQ=255)
    cctgctgtaacctgaccccgttcagCGGCTGggtg                                <  1:13912201‑M1/10‑1 (MQ=255)
    attcggaagaagatgagcgcccaatcggccGggtg                                <  1:12059086‑M1/5‑1 (MQ=255)
     tgtgtTCTTTTGTGCTTCGGATATCGGCTGggtgg                               <  1:18557962/35‑1 (MQ=255)
     tgtgtTCTTTTGTGCTTCGGATATCGGCTGggggg                               >  1:5871000/1‑35 (MQ=255)
     tgtgtTCTTTTGTGCTTCGGATATCGGCTGggggg                               >  1:5056107/1‑35 (MQ=255)
     tgtgtTCTTTTGTGCTTCGGATATCGGCTGggggg                               >  1:146021/1‑35 (MQ=255)
     ctgctgtaatctgaccccgttcagCGGCTGggtgg                               <  1:16241669‑M1/11‑1 (MQ=255)
     ctgctgtaatctgaccccgttcagCGGCTGggtgg                               <  1:10113398‑M1/11‑1 (MQ=255)
      tgctgtaatctgaccccgttcagCGGCTGggtggt                              <  1:5690320‑M1/12‑1 (MQ=255)
      tcggaagaagatgagcgcccaatcggccgggtggg                              <  1:15902812‑M1/7‑2 (MQ=255)
      gtgtTCTTTTGTGCTTCGGATATCGGCTGggtggt                              <  1:14694155/35‑1 (MQ=255)
      gtgtTCTTTTGTGCTTCGGATATCGGCTGggtggt                              <  1:6612041/35‑1 (MQ=255)
      gtgtTCTTTTGTGCTTCGGATATCGGCTGggtggt                              <  1:10076864/35‑1 (MQ=255)
       tgtTCTTTTGTGCTTCGGATATCGGCTGggggggg                             >  1:672411/1‑33 (MQ=38)
       tgtTCTTTTGTGCTTCGGATATCGGCTGggggggg                             >  1:4525998/1‑33 (MQ=38)
       tgtTCTTTGTGCTTCGGATATCGGCTGGGtggtgg                            <  1:16687501/35‑1 (MQ=38)
       gctgtaatctgaccccgttcagCGGCTGGggggtg                             <  1:13349467‑M1/13‑1 (MQ=255)
        gtTCTTTTGTGCTTCGGATATCGGCTGGGtggtgg                            <  1:10475789/35‑1 (MQ=255)
        gtTCTTTTGTGCTTCGGATATCGGCTGGGtggtgg                            <  1:7285575/35‑1 (MQ=255)
        gtTCTTTTGTGCTTCGGATATCGGCTGGGgggggg                            >  1:12462708/1‑35 (MQ=38)
        gtTCTTTTGTGCTTCGGATATCGGCTGGGgggggg                            >  1:3005147/1‑35 (MQ=38)
        gtTCTTTTGTGCTTCGGATATCGGCTGGGgggggg                            >  1:5532959/1‑35 (MQ=38)
        gtTCTTTTGTGCTTCGGATATCGGCTGGGgggggg                            >  1:17694161/1‑35 (MQ=38)
        gtTCTTTTGTGCTTCGGATATCGGCTGGGgggggg                            >  1:18457324/1‑35 (MQ=38)
        ctgtaatctgaccccgttcagCGGctgggtggcgg                            <  1:10739194‑M1/14‑4 (MQ=255)
         ttCTTTTGTGCTTCGGATATCGGCTGGGGGGGggg                           >  1:12724014/1‑35 (MQ=38)
         ttCTTTTGTGCTTCGGATATCGGCTGGGGGGGggg                           >  1:10875157/1‑35 (MQ=38)
         tgtaatctgaccccgttcagCGGCTGGgtggtggt                           <  1:16142710‑M1/15‑2 (MQ=255)
         gaagaagatgagcgcccaatcggccGGGTGGTggg                           <  1:8429175‑M1/10‑1 (MQ=255)
          tCTTTTGTGCTTCGGATATCGGCTGGGTGGTgggg                          <  1:3245887/35‑1 (MQ=255)
          tCTTTTGTGCTTCGGATATCGGCTGGGGGGGgggg                          >  1:11063988/1‑35 (MQ=255)
          gtaatctgaccccgttcagCGGCTGGGTGCtgggc                          <  1:14783956‑M1/16‑2 (MQ=255)
          aagaagatgagcgcccaatcggccGGGTGGggggc                          <  1:330604‑M1/11‑2 (MQ=255)
          aagaagatgagcgcccaatcggccGGGTGGTgggg                          <  1:5816918‑M1/11‑1 (MQ=255)
           taatctgaccccgttcagCGGCTgggtggtggcgg                         <  1:13330638‑M1/17‑4 (MQ=255)
           taatctgaccccgttcagCGGCTGGGTGgtgggag                         <  1:11989631‑M1/17‑3 (MQ=255)
           cTTTTGTGCTTCGGATATCGGCTGGGGGGGggggg                         >  1:20516132/1‑34 (MQ=255)
            ttttGTGCTTCGGATATCGGCTGGGTGGTGGGGCa                        <  1:12569186/35‑1 (MQ=255)
            ttttGTGCTTCGGATATCGGCTGGGGGGGgggggg                        >  1:6302782/1‑33 (MQ=255)
            aatctgaccccgttcagCGGCTGGGTggtgggcgg                        <  1:15150431‑M1/18‑4 (MQ=255)
             tttGTGCTTCGGATATCGGCTGGGTGGTGGGGCAt                       <  1:15404998/35‑1 (MQ=255)
             tttGTGCTTCGGATATCGGCTGGGGGGTggggggc                       >  1:795100/1‑32 (MQ=37)
             tttGTGCTTCGGATATCGGCTGGGGGGGggggggg                       >  1:9666895/1‑32 (MQ=255)
             tttGTGCTTCGGATATCGGCTGGGGGGGggggggg                       >  1:2333948/1‑32 (MQ=255)
             tttGTGCTTCGGATATCGGCTGGGGGGGggggggg                       >  1:12895886/1‑32 (MQ=255)
             atctgaccccgttcagCGGCTGGGTggtggggggg                       <  1:19657853‑M1/19‑4 (MQ=255)
              ttGTGCTTCGGATATCGGCTGGGTGGTGGGGCAtt                      <  1:13202998/35‑1 (MQ=255)
              ttGTGCTTCGGATATCGGCTGGGTGGTGGGGCAtt                      <  1:14380708/35‑1 (MQ=255)
               tgtgCTTCGGATATCGGCTGGGGGGGGGGGGAtgc                     >  1:7871873/1‑33 (MQ=255)
                gtgCTTCGGATATCGGCTGGGTGGTGGGGCATTCg                    <  1:20293835/35‑1 (MQ=255)
                gtgCTTCGGATATCGGCTGGGTGGTGGGGCATTCg                    <  1:17877911/35‑1 (MQ=255)
                gtgCTTCGGATATCGGCTGGGTGGTGGGGCATTCg                    <  1:14398574/35‑1 (MQ=255)
                 tgattCGGATATCGGCTGGGTGGTGGGGCATTCGt                   <  1:14746787/32‑1 (MQ=255)
                 tgCTTCGGATATCGGCTGGGTGGTGGGGCATTCGt                   <  1:11996043/35‑1 (MQ=255)
                  gCTTCGGATATCGGCTGGGTGGTGGGGCATTCGta                  <  1:15407410/35‑1 (MQ=255)
                  gCTTCGGATATCGGCTGGGTGGTGGGGCATTCGta                  <  1:2930238/35‑1 (MQ=255)
                   cTTCGGATATCGGCTGGGTGGTGGGGCATTCGtat                 <  1:11333607/35‑1 (MQ=255)
                   cTTCGGATATCGGCTGGGTGGTGGGGCATTCGtat                 <  1:16394061/35‑1 (MQ=255)
                   cTTCGGATATCGGCTGGGGGGGGGGGGGTTTGtat                 >  1:8906319/1‑35 (MQ=255)
                    ttCGGATATCGGCTGGGTGGTGGGGCATTCGtata                <  1:10714239/35‑1 (MQ=255)
                    ttCGGATATCGGCTGGGTGGTGGGGCATTCGtata                <  1:17877642/35‑1 (MQ=255)
                      cGGATATCGGCTGGGGGGGGGGGGGCTCGTCTATc              >  1:15086419/1‑35 (MQ=255)
                       ggATATCGGCTGGGTGGTGGGGCATTCGTATATCg             <  1:9376865/35‑1 (MQ=255)
                       ggATATCGGCTGGGTGGTGGGGCATTCGTATATCg             <  1:11509330/35‑1 (MQ=255)
                        gATATCGGCTGGGTGGTGGGGCATTCGTATATCGt            <  1:11477961/35‑1 (MQ=255)
                        gATATCGGCTGGGTGGTGGGGCATTCGTATATCGt            <  1:2737391/35‑1 (MQ=255)
                        gATATCGGCTGGGTGGTGGGGCATTCGTATATCGt            <  1:16897110/35‑1 (MQ=255)
                         atatCGGCTGGGTGGTGGGGCATTCGTATATCGTc           <  1:3963300/35‑1 (MQ=255)
                         atatCGGCTGGGTGGGGGGGCATTCGTATATCGTc           <  1:19583684/35‑1 (MQ=255)
                           atCGGCTGGGTGGTGGGGCATTCGTATATCGTCTa         <  1:20123649/35‑1 (MQ=255)
                            tCGGCTGGGTGGTGGGGCATTCGTATATCGTCTAc        <  1:6989931/35‑1 (MQ=255)
                            tCGGCTGGGTGGTGGGGCATTCGTATATCGTCTAc        <  1:3683847/35‑1 (MQ=255)
                              GGCTGGGTGGTGGGGCATTCGTATATCGTCTAcgc      <  1:17070290‑M1/35‑1 (MQ=255)
                               GCTGGGTGGTGGGGCATTCGTATATCGTCTAcgcg     >  1:15857100‑M1/1‑35 (MQ=255)
                               GCGGGGTGGTGGGGCATTCGTATATCGTCTAcgcg     >  1:3357747‑M1/1‑35 (MQ=255)
                                CTGGGTGGTGGGGCATTCGTATATCGTCTACgcgc    >  1:19750103‑M1/1‑35 (MQ=255)
                                 TGGGTGGTTGGGCATTCGTATATCGTCTACGcgcc   <  1:4962766‑M1/35‑1 (MQ=255)
                                  GGGTGGTGGGGCATTCGTATATCGTCTACGcgccg  >  1:12857163‑M1/1‑35 (MQ=255)
                                  GGGTGGTGGGGCATTCGTATATCGTCTACGcgccg  >  1:8042215‑M1/1‑35 (MQ=255)
                                  GGGTGGTGGGGCATTCGTATATCGTCTACGcgccg  <  1:172398‑M1/35‑1 (MQ=255)
                                  |                                  
GGCGGTGTGTTCTTTTGTGCTTCGGATATCGGCTGGGTGGTGGGGCATTCGTATATCGTCTACGCGCCG  >  REL606/326175‑326243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.