Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,776,434 IS150 (–) +4 bp 56.9% intergenic (‑225/+56) pheS ← / ← pheM phenylalanyl‑tRNA synthetase alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1776434 =33 (0.390)48 (0.470) 28/48 NT 54.8% intergenic (‑225/+59) pheS/pheM phenylalanyl‑tRNA synthetase alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 177643733 (0.390)39 (0.380) 21/48 NT 49.6% intergenic (‑228/+56) pheS/pheM phenylalanyl‑tRNA synthetase alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 169 total aligned reads displayed.

TATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTC  >  REL606/1776400‑1776468
                                  |                                  
 catttgatcgtccaacaaaatgggtgcagtacaAc                                   >  1:15488037‑M1/34‑35 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacaAc                                   >  1:2241857‑M1/34‑35 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacaAc                                   <  1:8270235‑M1/2‑1 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacaAc                                   >  1:145136‑M1/34‑35 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacaAc                                   >  1:14793235‑M1/34‑35 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacaAc                                   <  1:978435‑M1/2‑1 (MQ=255)
 aTTTTTCAAAACGCGCATACAAAAAAAGCCTCCAc                                   >  1:8914739/1‑35 (MQ=255)
 aTTTTTCAAAACGCGCATACAAAAAAAGCCTCCAc                                   >  1:11583244/1‑35 (MQ=255)
 aTTTTTCAAAACGCGCATACAAAAAAAGCCTCCAc                                   >  1:5359453/1‑35 (MQ=255)
  tttttCAAAACGCGCATACAAAAAAAGCCTCCACt                                  >  1:3912079/1‑35 (MQ=255)
  atttcatcgtccaacaaaatgggtgcagtacaACt                                  <  1:1428854‑M1/3‑1 (MQ=255)
  atttcatcgtccaacaaaatgggtgcagtacaACt                                  >  1:9566091‑M1/33‑35 (MQ=255)
  atttcatcgtccaacaaaatgggtgcagtacaACt                                  >  1:20425139‑M1/33‑35 (MQ=255)
  atttcatcgtccaacaaaatgggtgcagtacaACt                                  >  1:6087214‑M1/33‑35 (MQ=255)
  atttcatcgtccaacaaaatgggtgcagtacaACt                                  >  1:13334248‑M1/33‑35 (MQ=255)
   ttttCAAAACGCGCATACAAAAAAAGCCTCCACTg                                 >  1:15794263/1‑35 (MQ=255)
    tttCAAAACGCGCATACAAAAAAAGCCTCCACTgg                                >  1:759172/1‑35 (MQ=255)
     ttCAAAACGCGCATACAAAAAAAGCCTCCACTGtg                               >  1:4959412‑M1/1‑33 (MQ=255)
      catcgtccaacaaaatgggtgcagtacaACTGGGa                              <  1:15477130‑M1/7‑1 (MQ=255)
      catcgtccaacaaaatgggtgcagtacaACTGGGa                              >  1:8575115‑M1/29‑35 (MQ=255)
        tcgtccaacaaaatgggtgcagtacaACTGGGAgg                            <  1:3966370‑M1/9‑1 (MQ=255)
        tcgtccaacaaaatgggtgcagtacaACTGGGAgg                            <  1:9345312‑M1/9‑1 (MQ=255)
        aaaaCGCGCATACAAAAAAAGCCTCCACTGtgtac                            >  1:16680911‑M1/1‑30 (MQ=255)
        aaaaCGCGCATACAAAAAAAGCCTCCACTGGGAgg                            >  1:6636369/1‑35 (MQ=255)
         cgtccaacaaaatgggtgcagtacaACTGGGAGGc                           <  1:15298498‑M1/10‑1 (MQ=255)
         cgtccaacaaaatgggtgcagtacaACTGGGAGGc                           <  1:19418512‑M1/10‑1 (MQ=255)
         cgtccaacaaaatgggtgcagtacaACTGGGAGGc                           <  1:10999161‑M1/10‑1 (MQ=255)
         aaaCGCGCATACAAAAAAAGCCTCCACTGtgtact                           >  1:12805942‑M1/1‑29 (MQ=255)
         aaaCGCGCATACAAAAAAAGCCTCCACTGtgtact                           >  1:8988467‑M1/1‑29 (MQ=255)
          gtccaacaaaatgggtgcagtacaACTGGGAGGCt                          >  1:11854333‑M1/25‑35 (MQ=255)
          aaCGCGCATAAAAAAAAAGCCTCCACTGGGAGGCt                          <  1:19148808/35‑1 (MQ=255)
          aaCGCGCATAAAAAAAAAGCCTCCACTGGGAGGCt                          <  1:1796030/35‑1 (MQ=255)
           tccaacaaaatgggtgcagtacaACTGGGAGGCtt                         >  1:20212648‑M1/24‑35 (MQ=255)
           tccaacaaaatgggtgcagtacaACTGGGAGGCtt                         <  1:913584‑M1/12‑1 (MQ=255)
           tccaacaaaatgggtgcagtacaACTGGGAGGCtt                         >  1:3814220‑M1/24‑35 (MQ=255)
           aCGCGCATACAAAAAAAGCCTCCACTGtgtactga                         >  1:20390632‑M1/1‑27 (MQ=255)
           aCGCGCATACAAAAAAAGCCTCCACTGtgtactga                         >  1:3738545‑M1/1‑27 (MQ=255)
           aCGCGCATACAAAAAAAGCCTCCACTGTGAGGCtt                         >  1:10846752/1‑35 (MQ=255)
           aCGCGCATACAAAAAAAGCCTCCACTGGGAGGCtt                         >  1:6742500/1‑35 (MQ=255)
           aCGCGCATACAAAAAAAGCCTCCACTGGGAGGCtt                         <  1:10509108/35‑1 (MQ=255)
            cgcgCATACAAAAAAAGCCTCCACTGGGAGGTttt                        >  1:1888215/1‑35 (MQ=255)
            cgcgCATACAAAAAAAGCCTCCACTGGGAGGCttt                        >  1:10835179/1‑35 (MQ=255)
             gcgcATACAAAAAAAGCCTCCACTGGGATGCTTTc                       >  1:14562155/1‑35 (MQ=255)
             gcgcATACAAAAAAAGCCTCCACTGGGAGGCTTTc                       >  1:2115483/1‑35 (MQ=255)
             caacaaaatgggtgcagtacaACTGGGAGGCTTTc                       >  1:5409188‑M1/22‑35 (MQ=255)
              cgcATACAAAAAAAGCCTCCACTGtgtactgaccc                      >  1:19073783‑M1/1‑24 (MQ=255)
              cgcATAAAAAAAAAGCCTCCACTGGGAGGCTTTCa                      <  1:16172836/35‑1 (MQ=255)
               acaaaatgggtgcagtacaACTGGGAGGCTTTCAg                     >  1:6182024‑M1/20‑35 (MQ=255)
               acaaaatgggtgcagtacaACTGGGAGGCTTTCAg                     >  1:20185684‑M1/20‑35 (MQ=255)
                caaaatgggtgcagtacaACTGGGAGGCTTTCAgg                    <  1:16379508‑M1/17‑1 (MQ=255)
                cATACAAAAAAAGCCTCCACTGtgtactgacccca                    >  1:779258‑M1/1‑22 (MQ=255)
                 aaaatgggtgcagtacaACTGGGAGGCTTTCAGgc                   <  1:12949700‑M1/18‑1 (MQ=255)
                 aTACAAAAAAAGCCTCCACTGGGAGGCTTTCAGgc                   >  1:17777704/1‑35 (MQ=255)
                  tACAAAAAAAGCCTCCACTGtgtactgactccaaa                  >  1:12410630‑M1/1‑20 (MQ=255)
                  tACAAAAAAAGCCTCCACTGGGAGGCTTTCAGgcg                  >  1:16835135/1‑35 (MQ=255)
                  aaatgggtgcagtacaACTGGGAGGCTTTCAGgcg                  >  1:468877‑M1/17‑35 (MQ=255)
                   aaaaaaaaagcCTCCACTGtgtactgaccccaaaa                 <  1:10568634‑M1/33‑17 (MQ=255)
                    cAAAAAAGGCCTCCACTGGGAGGCTTTCAGGCGCt                <  1:2664069/35‑1 (MQ=255)
                    cAAAAAAAGCCTCCACTGtgtactgaccccaaaaa                >  1:5825773‑M1/1‑18 (MQ=255)
                    cAAAAAAAGCCTCCACTGGGAGGCTTTCAGGCGCt                >  1:11932957/1‑35 (MQ=255)
                    aaaaaaaaGCCTCCACTGGGAGGCTTTCAGGCGCt                <  1:16865649/34‑1 (MQ=255)
                     tgggtgcagtacaACTGGGAGGCTTTCAGGCGCTg               <  1:12710659‑M1/22‑1 (MQ=255)
                     aaaaaaaGCCTCCACTGtgtactgaccccaaaaag               >  1:8259866‑M1/1‑17 (MQ=255)
                     aaaaaaaGCCTCCACTGGGAGGCTTTCAGGCGCTg               >  1:3019978/1‑35 (MQ=255)
                      aaaaaaGCCTCCACTGtgtactgaccccaaaaagt              <  1:17336871‑M1/35‑20 (MQ=255)
                      aaaaaaGCCTCCACTGtgtactgaccccaaaaagt              >  1:14045052‑M1/1‑16 (MQ=255)
                      aaaaaaGCCTCCACTGtgtactgaccccaaaaagt              <  1:3235996‑M1/35‑20 (MQ=255)
                       ggtgcagtacaACTGGGAGGCTTTCAGGCGctggg             <  1:8014551‑M1/24‑3 (MQ=255)
                       ggtgcagtacaACTGGGAGGCTTTCAGGCGCTGtt             >  1:5921708‑M1/12‑35 (MQ=255)
                        gtgcagtacaACTGGGAGGCTTTCAGGCgctggtt            <  1:11451836‑M1/25‑4 (MQ=255)
                        gtgcagtacaACTGGGAGGCTTTCAGGCGCTGttt            >  1:10104064‑M1/11‑35 (MQ=255)
                        aaaaGCCTCCACTGGGAGGCTTTCAGGCGCTgggt            >  1:15151685/1‑32 (MQ=255)
                        aaaaGCCTCCACTGGGAGGCTTTCAGGCGCTGgtt            >  1:12052765/1‑35 (MQ=255)
                        aaaaGCCTCCACTGGGAGGCTTTCAGGCGCTGgtt            >  1:11619698/1‑35 (MQ=255)
                        aaaaGCCTCCACTGGGAGGCTTTCAGGCGCTGgtt            >  1:16247834/1‑35 (MQ=255)
                         taaGCCTCCACTGGGAGGCTTTCAGGCGCTGtttt           <  1:2669619/34‑1 (MQ=255)
                         aaaGCCTCCACTGGGAGGCTTTCAGGCGCTGtttt           <  1:15135389/35‑1 (MQ=255)
                          gcagtacaACTGGGAGGCTTTCAGGCGCTGTTTTc          >  1:20014316‑M1/9‑35 (MQ=255)
                          aaccctccACTGtgtactgaccccaaaaagttgga          <  1:5513946‑M1/32‑24 (MQ=255)
                          aaGCCTCCACTGtgtactgaccccaaaaagttgga          >  1:6397845‑M1/1‑12 (MQ=255)
                          aaGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTc          <  1:3400118/35‑1 (MQ=255)
                           aGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTcc         <  1:11190945/35‑1 (MQ=255)
                            nnctcNNCTGtgtactgaccccaaaaagttggaca        <  1:17347595‑M1/33‑26 (MQ=255)
                            ccctCCACTGtgtactgaccccaaaaagttggaca        <  1:17666143‑M1/34‑26 (MQ=255)
                            agtacaACTGGGAGGCTTTCAGGCGCTGTTTTCCg        >  1:4107304‑M1/7‑35 (MQ=255)
                             gtacaACTGGGAGGCTTTCAGGCGCTGTTTTCCGt       >  1:13886275‑M1/6‑35 (MQ=255)
                             ccTCCACTGtgtactgaccccaaaaagttggacag       <  1:13429188‑M1/35‑27 (MQ=255)
                             ccTCCACTGtgtactgaccccaaaaagttggacag       >  1:7522300‑M1/1‑9 (MQ=255)
                              tacaACTGGGAGGCTTTCAGGCGCTGTTTTCCGtt      >  1:1008219‑M1/5‑35 (MQ=255)
                              ccccacTGtgtactgaccccaaaaagttggacagt      >  1:9347595‑M1/3‑8 (MQ=255)
                              cTCCACTGtgtactgaccccaaaaagttggacagt      <  1:13475131‑M1/35‑28 (MQ=255)
                              cTCCACTGGGATGCTTTCAGGCGCTGTGTTACgct      >  1:11268854/1‑33 (MQ=21)
                              cTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGtn      <  1:16648650/35‑1 (MQ=255)
                               tCCACTGtgtactgaccccaaaaagttggacagtt     <  1:10346386‑M1/35‑29 (MQ=255)
                               acaaCTGGGAGGCTTTCAGGCGCTGGTTTTCGttt     >  1:10721552/4‑35 (MQ=25)
                                caACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTtc    >  1:7770015‑M1/3‑35 (MQ=255)
                                 aACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTtct   >  1:13382987‑M1/2‑35 (MQ=255)
                                 aACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTtct   >  1:3499410‑M1/2‑35 (MQ=255)
                                  aCTGGGAGGCTTTCAGGCGCTGTTTTCCGTttctc  <  1:5783290/35‑1 (MQ=255)
                                  aCTGGGAGGCTTTCAGGCGCTGGTTTTCGTttttc  >  1:14627776/1‑35 (MQ=25)
                                  |                                  
TATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTC  >  REL606/1776400‑1776468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.