New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3741965 | NA (NA) | 80 (0.780) | 37/48 | NT | 93.0% | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 3742143 = | 6 (0.060) | pseudogene (223/405 nt) | waaT | UDP‑galactose:(Glucosyl) LPS alpha1,2‑galactosyltransferase WaaT |
Only 100 of 112 total aligned reads displayed.
CATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3741933‑3741965 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCTGAAGTATGTCGCGTACGACCAAAACTGTG > REL606/3742143‑3742175 CATACACTAACTCAGTAAGTTGGCAGCATCACCCC > 1:12628856/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCCC < 1:12660416/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCC < 1:8255701/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCC > 1:7955335/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCCC < 1:11592000/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCC < 1:19627159/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCC < 1:2969322/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCC > 1:2990411/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCCC > 1:11082773/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCCC < 1:1059753/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCC > 1:9562651/1‑35 ATACACTAAATCAGTAAGTTGGCAGCATCACCCCC > 1:5408242/1‑35 ATACACTAAATCAGTAAGTTGGCAGCATCACCCCC > 1:12497626/1‑35 TACACTAAATCAGTAAGTTGGCAGCATCACCCCCT < 1:19138096/35‑1 TACACTAAATCAGTAAGTTGGCAGCATCACCCCCT < 1:1763276/35‑1 TACACTAAATCAGTAAGTTGGCAGCATCACCCCCT < 1:13929920/35‑1 TACACTAAATCAGTAAGTTGGCAGCATCACCCCCT > 1:398021/1‑35 ACACTAAATCAGTAAGTTGGCAGCATCACCCCCTG < 1:15506513/35‑1 CACTAAATCAGTAAGTTGGCAGCATCACCCCCTGA > 1:6391404/1‑35 CACTAAATCAGTAAGTTGGCAGCATCACCCCCTGA < 1:11789356/35‑1 ACTAAATCAGTAAGTTGGCAGCATCACCCCCTGAA > 1:19417802/1‑35 CTAAATCAGTAAGTTGGCAGCATCACCCCCTGAAG > 1:12152402/1‑35 CTAAATCAGTAAGTTGGCAGCATCACCCCCTGAAG > 1:16270203/1‑35 CTAAATCAGTAAGTTGGCAGCATCACCCCCTGAAG < 1:5129980/35‑1 CTAAATCAGTAAGTTGGCAGCATCACCCCCTGAAG < 1:11752739/35‑1 TAAATCAGTAAGTTGGCAGCATCACCCCCTGAAGT < 1:662233/35‑1 TAAATCAGTAAGTTGGCAGCATCACCCCCTGAAGT < 1:5960916/35‑1 TAAATCAGTAAGTTGGCAGCATCACCCCCTGAAGT < 1:13801616/35‑1 AAATCAGTAAGTTGGCAGCATCACCCCCTGAAGTA > 1:5591522/1‑35 AAATCAGTAAGTTGGCAGCATCACCCCCTGAAGTA < 1:18280996/35‑1 AAATCAGTAAGTTGGCAGCATCACCCCCTGAAGTA < 1:6779919/35‑1 AAATCAGTAAGTTGGCAGCATCACCCACTGAAGTA < 1:458091/35‑1 AATCAGTAAGTTGGCAGCATCACCCCCTGAAGTAT < 1:7970153/35‑1 ATCAGTAATTTGGCAGCATCACCCCCTGAAGTATG > 1:18061234/1‑35 ATCAGTAAGTTGGCAGCATCACCCCCTGAAGTATG < 1:13960978/35‑1 TCAGTAAGTTGGCAGCATCACCCCCTGAAGTATGT < 1:2267144/35‑1 TCAGTAAGTTGGCAGCATCACCCCCTGAAGTATGT < 1:17949264/35‑1 TCAGTAAGTTGGCAGCATCACCCCCTGAAGTATGT > 1:9189551/1‑35 TCAGTAAGTTGGCAGCATCACCCCCTGAAGTATGT > 1:8321590/1‑35 TCAGTAAGTTGGCAGCATCACCCCCTGAAGTATGT < 1:1320037/35‑1 TCAGTAAGTTGGCAGCATCACCCCCTGAAGTATGT < 1:14997950/35‑1 CAGTAAGTTGGCAGCATCACCCCCTGAAGTATGTC < 1:1744757/35‑1 CAGTAAGTTGGCAGCATCACCCCCTGAAGTATGTC < 1:19443575/35‑1 CAGTAAGTTGGCAGCATCACCCCCTGAAGTATGTC > 1:5721100/1‑35 AGTAAGTTGGCAGCATCACCCCCTGAAGTATGTCG < 1:4348075/35‑1 AGTAAGTTGGCAGCATCACCCCCTGAAGTATGTCG < 1:534429/35‑1 AGTAAGTTGGCAGCATCACCCCCTGAAGTATGTCG < 1:19340174/35‑1 AGTAAGTTGGCAGCATCACCCCCTGAAGTATGTCG > 1:66492/1‑35 GTAAGTTGGCAGCATCACCCCCTGAAGTATGTCGC < 1:9529420/35‑1 GTAAGTTGGCAGCATAACCCCCTGAAGTATGTCGC < 1:1505415/35‑1 TAAGTTGGCAGCATCACCCCCTGAAGTATGTCGCG > 1:10341834/1‑35 TAAGTTGGCAGCATCACCCCCTGAAGTATGTCGCG > 1:3238771/1‑35 TAAGTTGGCAGCATCACCCCCTGAAGTATGTCGCG < 1:15214190/35‑1 TAAGTTGGCAGCATCACCCCCTGAAGTATGTCGCG > 1:16407572/1‑35 AAGTTGGCAGCATCACCCCCTGAAGTATGTCGCGT > 1:14077579/1‑35 AAGTTGGCAGCATCACCCCCTGAAGTATGTCGCGT < 1:1455046/35‑1 AGTTGGCAGCATCACCCCCTGAAGTATGTCGCGTA < 1:13968762/35‑1 AGTTGGCAGCATCACCCCCTGAAGTATGTCGCGTA < 1:11257832/35‑1 AGTTGGCAGCATCACCCCCTGAAGTATGTCGCGTA < 1:18244775/35‑1 AGTTGGCAGCATCACCCACTGAAGTATGTCGCGTA < 1:1132761/35‑1 AGTTGGCAGCATAACCCCCTGAAGTATGTCGCGTA < 1:15526474/35‑1 TTGGCAGCATCACCCCCTGAAGTATGTCGCGTACG < 1:19562882/35‑1 TTGGCAGCATCACCCCCTGAAGTATGTCGCGTACG < 1:7012943/35‑1 TTGGCAGCATCACCCCCTGAAGTATGTCGCGTACG < 1:13917538/35‑1 TGGCAGCATCACCCCCTGAAGTATGTCGCGTACGA < 1:11242285/35‑1 TGGCAGCATCACCCCCTGAAGTATGTCGCGTACGA < 1:16553635/35‑1 TGGCAGCATCACCCCCTGAAGTATGTCGCGTACGA < 1:16880599/35‑1 TGGCAGCATCACCCCCTGAAGTATGTCGCGTACGA < 1:18473630/35‑1 GGCAGCATCACCCCCTGAAGTATGTCGCGTACGAC > 1:10096500/1‑35 GGCAGCATCACCCCCTGAAGTATGTCGCGTACGAC < 1:16298996/35‑1 GGCAGCATCACCCCCTGAAGTATGTCGCGTACGAC < 1:2505789/35‑1 GCAGCATCACCCCCTGAAGTATGTCGCGTACGACC < 1:14248852/35‑1 GCAGCATCACCCCCTGAAGTATGTCGCGTACGACC < 1:2689141/35‑1 CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA < 1:16034741/35‑1 CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA < 1:175677/35‑1 CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA < 1:9313785/35‑1 CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA > 1:19603438/1‑35 CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA < 1:20349887/35‑1 CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA < 1:11099582/35‑1 CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA < 1:301329/35‑1 CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA > 1:3520169/1‑35 AGCATCACCCCCTGAAGTATGTCGCGTACGACCAA > 1:17880708/1‑35 AGCATCACCCCCTGAAGTATGTCGCGTACGACCAA > 1:16979530/1‑35 AGCATCACCCCCTGAAGTATGTCGCGTACGACCAA > 1:13365914/1‑35 GCATCACCCCCTGAAGTATGTCGCGTACGACCAAA > 1:19386668/1‑35 GCATCACCCCCTGAAGTATGTCGCGTACGACCAAA < 1:9466880/35‑1 GCATCACCCCCTGAAGTATGTCGCGTACGACCAAA < 1:11188796/35‑1 CATCACCCCCTGAAGTATGTCGCGTACGACCAAAA > 1:7936232/1‑35 ATCACCCCCTGAAGTATGTCGCGTACGACCAAAAC < 1:8083067/35‑1 ATCACCCCCTGAAGTATGTCGCGTACGACCAAAAC > 1:11550226/1‑35 tccCCCCCTGAAGTATGTCGCGTACGACCAAAACT < 1:6045040/32‑1 TCACCCCCTGAAGTATGTCGCGTACGACCAAAACT > 1:14358024/1‑35 TCACCCCCTGAAGTATGTCGCGTACGACAAAAACT < 1:9787898/35‑1 tACCCCCTGAAGTATGTCGCGTACGACCAAAACTG < 1:5173083/34‑1 CACCCCCTGAAGTATGTCGCGTACGACCAAAACTG < 1:8397776/35‑1 CACCCCCTGAAGTATGTCGCGTACGACCAAAACTG < 1:18198865/35‑1 ACCCCCTGAAGTATGTCGCGTACGACCAAAACTGT > 1:8031034/1‑35 CCCCCTGAAGTATGTCGCGTACGACCAAAACTGTG < 1:8415954/35‑1 CCCCCTGAAGTATGTCGCGTACGACCAAAACTGTG < 1:4855282/35‑1 CCCCCTGAAGTATGTCGCGTACGAACAAAACTGTG < 1:898270/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3741933‑3741965 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCTGAAGTATGTCGCGTACGACCAAAACTGTG > REL606/3742143‑3742175 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |