Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 737,252 | C→A | 4.2% | I185I (ATC→ATA) | sdhA → | succinate dehydrogenase flavoprotein subunit |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 737,252 | 0 | C→A | 4.2% | 2.2 0.0 ‑0.0 | 137 | I185I (ATC→ATA) | sdhA | succinate dehydrogenase flavoprotein subunit |
Reads supporting (aligned to +/- strand): new base (3/3): ref base (56/74): total (60/77) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.99e-01 |
Only 100 of 143 total aligned reads displayed.
ATGGCGCGGTGGTGGGTTGTACCGCACTGTGCATCGAAACCGGTGAAGTGGTTTATTTCAAAGCCCGCG > REL606/737218‑737286 | aTGGCGCGGTGGTGGGTTGTACCGCACTGTGCATc < 1:9513906/35‑1 (MQ=255) aTGGCGCGGTGGTGGGTTGTACCGCACTGTGCATc < 1:18904270/35‑1 (MQ=255) tGGCGCGGTGGTGGGTTGTACCGCACTGTGCATCg < 1:8341898/35‑1 (MQ=255) tGGCGCGGTGGTGGGTTGTACCGCACTGTGCATCg < 1:17301669/35‑1 (MQ=255) tGGCGCGGTGGTGGGTTGTACCGCACTGTGCATCg < 1:13040051/35‑1 (MQ=255) ggCGCGGTGGTGGGTTGTACCGCACTGTGCATCGa < 1:7782918/35‑1 (MQ=255) ggCGCGGTGGTGGGTTGTACCGCACTGTGCATCGa < 1:6407907/35‑1 (MQ=255) ggCGCGGTGGTGGGTTGTACCGCACTGTGCATCGa < 1:1894154/35‑1 (MQ=255) gcgcGGTGGTGGGTTGTACCGCACTGTGCATCGaa < 1:15024005/35‑1 (MQ=255) gcgcGGTGGTGGGTTGTACCGCACTGTGCATCGaa > 1:6106155/1‑35 (MQ=255) gcgcGGTGGTGGGTTGTACCGCACTGTGCATCGaa < 1:6116250/35‑1 (MQ=255) gcgcGGTGGTGGGTTGTACCGCACTGTGCATAGaa > 1:10972369/1‑35 (MQ=255) cgcgGTGGTGGGTTGTACCGCACTGTGCATCGaaa < 1:2034037/35‑1 (MQ=255) gcgGTGGTGGGTTGTACCGCACTGTGCATCGAAAc < 1:5097875/35‑1 (MQ=255) gcgGTGGTGGGTTGTACCGCACTGTGCATCGAAAc < 1:15612169/35‑1 (MQ=255) gcgGTGGTGGGTTGTACCGCACTGTGCATAGAAAc < 1:2585284/35‑1 (MQ=255) cgGTGGTGGGTTGTACCGCACTGTGCATCGAAAcc < 1:4640142/35‑1 (MQ=255) cgGTGGTGGGTTGTACCGCACTGTGCATCGAAAcc < 1:2797774/35‑1 (MQ=255) ggtggtGGGTTGTACCGCACTGTGCATGGAAACCg > 1:19371731/1‑35 (MQ=255) ggtggtGGGTTGTACCGCACTGTGCATCGAAACCg < 1:5483398/35‑1 (MQ=255) ggtggtGGGTTGTACCGCACTGTGCATCGAAACCg > 1:5264706/1‑35 (MQ=255) ggtggtGGGTTGTACCGCACTGTGCATCGAAACCg > 1:11126561/1‑35 (MQ=255) ggtggtGGGTTGTACCGCACTGTGCATCGAAACCg < 1:13555693/35‑1 (MQ=255) ggtggtGGGGTGTACCGCACTGTGCATCGAAACCg > 1:8408975/1‑35 (MQ=255) gtggtgGGTTGTACCGCACTGTGCATCGAAACCgg > 1:18771309/1‑35 (MQ=255) gtggtgGGTTGTACCGCACTGTGCATCGAAACCgg > 1:13716341/1‑35 (MQ=255) gtggtgGGTTGTACCGCACTGTGCATCGAAACCgg < 1:10485510/35‑1 (MQ=255) tggtggGTTGTACCGCACTGTGCATCGAAACCGGt > 1:12507967/1‑35 (MQ=255) ggtggGTTGTACCGCACTGTGCATCGAAACCGGTg < 1:7437166/35‑1 (MQ=255) ggtggGTTGTACCGCACTGTGCATCGAAACCGGTg < 1:4329620/35‑1 (MQ=255) tggGTTGTACCGCACTGTGCATCGAAACCGGTGaa < 1:2320249/35‑1 (MQ=255) tggGTTGTACCGCACTGTGCATCGAAACCGGTGaa < 1:2367515/35‑1 (MQ=255) tggGTTGTACCGCACTGTGCATCGAAACCGGTGaa > 1:4539361/1‑35 (MQ=255) tggGTTGTACCGCACTGTGCATCGAAACCGGTGaa < 1:15857310/35‑1 (MQ=255) tggGTTGTACCGCACTGTGCATCGAAACCGGTGaa < 1:5844845/35‑1 (MQ=255) tggGTTGTACCGCACTGTGCATCGAAACCGGTGaa < 1:10579309/35‑1 (MQ=255) tggGTTGTACCGCACTGTGCATCGAAACCGGTGaa > 1:14549127/1‑35 (MQ=255) tggGTTGTACCGAACTGTGCATCGAAACCGGTGaa < 1:12365752/35‑1 (MQ=255) gggTTGTACCGCACTGTGCATCGAAACCGGTGAAg > 1:12320761/1‑35 (MQ=255) gggTTGTACCGCACTGTGCATCGAAACCGGTGAAg < 1:14335751/35‑1 (MQ=255) gggTTGTACCGCACTGTGCATCGAAACCGGTGAAg < 1:13239354/35‑1 (MQ=255) gTTGTACCGCACTGTGCATCGAAACCGGTGAAGTg > 1:447508/1‑35 (MQ=255) ttGTACCGCACTGTGCATCGAAACCGGTGAAGTgg < 1:3784811/35‑1 (MQ=255) ttGTACCGCACTGTGCATCGAAACCGGTGAAGTgg > 1:10237397/1‑35 (MQ=255) tGTACCGCACTGTGCATCGAAACCGGTGAAGTGGt > 1:1636201/1‑35 (MQ=255) tGTACCGCACTGTGCATCGAAACCGGTGAAGTGGt > 1:1700000/1‑35 (MQ=255) tGTACCGCACTGTGCATCGAAACCGGTGAAGTGGt > 1:9450082/1‑35 (MQ=255) tGTACCGCACTGTGCATCGAAACCGGTGAAGTGGt < 1:2926332/35‑1 (MQ=255) tGTACCGCACTGTGCATCGAAACCGGTGAAGTGGt > 1:15588755/1‑35 (MQ=255) tACCGCACTGTGCATCGAAACCGGTGAAGTGGttt > 1:18166948/1‑35 (MQ=255) ccGCACTGTGCATCGAAACCGGTGAAGTGGTTTAt < 1:753200/35‑1 (MQ=255) cGCACTGTGCATCGAAACCGGTGAAGTGGTTTAtt < 1:2230351/35‑1 (MQ=255) cGCACTGTGCATCGAAACCGGTGAAGTGGTTTAtt > 1:7279826/1‑35 (MQ=255) cGCACTGTGCATCGAAACCGGTGAAGTGGTTTAtt < 1:19933569/35‑1 (MQ=255) cGCACTGTGCATCGAAACCGGTGAAGTGGTTTAtt > 1:14839678/1‑35 (MQ=255) gCACTGTGCATCGAAACCGGTGAAGTGGTTTAttt > 1:19611560/1‑35 (MQ=255) gCACTGTGCATCGAAACCGGTGAAGTGGTTTAttt > 1:16313331/1‑35 (MQ=255) gCACTGTGCATCGAAACCGGTGAAGTGGTTTAttt < 1:20324386/35‑1 (MQ=255) gCACTGTGCATCGAAACCGGTGAAGTGGTTTAttt > 1:3327971/1‑35 (MQ=255) gCACTGTGCATAGAAACCGGTGAAGTGGTTTAttt < 1:13499946/35‑1 (MQ=255) cACTGTGCATCGAAACCGGTGAAGTGGTTTATTTc < 1:16298407/35‑1 (MQ=255) cACTGTGCATCGAAACCGGTGAAGTGGTTTATTTc < 1:4104603/35‑1 (MQ=255) cACTGTGCATCGAAACCGGTGAAGTGGTTTATTTc < 1:11661831/35‑1 (MQ=255) cACTGTGCATCGAAACCGGTGAAGTGGTTTATTTc < 1:18146023/35‑1 (MQ=255) cACTGTGCATCGAAACCGGTGAAGTGGTTTATTTc < 1:3658635/35‑1 (MQ=255) cACTGTGCATCGAAACCGGTGAAGTGGTTTATTTc < 1:18535072/35‑1 (MQ=255) aCTGTGCATCGAAACCGGTTAAGTGGTTTATTTCa > 1:1685032/1‑35 (MQ=255) aCTGTGCATCGAAACCGGTGAAGTGGTTTATTTCa > 1:3334505/1‑35 (MQ=255) aCTGTGCATCGAAACCGGTGAAGTGGTTTATTTCa > 1:16320358/1‑35 (MQ=255) cTGTGCATCGAAACCGGTGAAGTGGTTTATTTCaa > 1:17128832/1‑35 (MQ=255) cTGTGCATCGAAACCGGTGAAGTGGTTTATTTCaa < 1:6740826/35‑1 (MQ=255) cTGTGCATCGAAACCGGTGAAGTGGTTTATTTCaa < 1:20179319/35‑1 (MQ=255) tgtgCATCTAAACCGGTGAAGTGGTTTATTTCaaa > 1:15073823/1‑35 (MQ=255) tgtgCATCGAAACCGGTGAAGTGGTTTATTTCaaa < 1:18730026/35‑1 (MQ=255) tgtgCATCGAAACCGGTGAAGTGGTTTATTTCaaa > 1:17736857/1‑35 (MQ=255) tgtgCATCGAAACCGGTGAAGTGGTTTATTTCaaa < 1:8427827/35‑1 (MQ=255) tgtgCATCGAAACCGGTGAAGTGGTTTATTTCaaa > 1:1520234/1‑35 (MQ=255) gtgCATCGAAACCGGTGAAGTGGTTTATTTCAAAg < 1:2084901/35‑1 (MQ=255) gtgCATCGAAACCGGTGAAGTGGTTTATTTCAAAg > 1:1616804/1‑35 (MQ=255) tgCATCGAAACCGGTGAAGTGGTTTATTTCAAAGc > 1:11165295/1‑35 (MQ=255) tgCATCGAAACCGGTGAAGTGGTTTATTTCAAAGc > 1:3803697/1‑35 (MQ=255) tgCATCGAAACCGGTGAAGTGGTTTATTTCAAAGc > 1:1319704/1‑35 (MQ=255) gCATCGAAACCGGTGAAGTGGTTTATTTCAAATcc > 1:20047854/1‑35 (MQ=255) gCATCGAAACCGGTGAAGTGGTTTATTTCAAAGcc < 1:5702505/35‑1 (MQ=255) gCATCGAAACCGGTGAAGTGGTTTATTTCAAAGcc < 1:13818304/35‑1 (MQ=255) gCATCGAAACCGGTGAAGTGGTTTATTTCAAAGcc < 1:10332666/35‑1 (MQ=255) gCATCGAAACCGGTGAAGTGGTTTATTTCAAAGcc < 1:13330605/35‑1 (MQ=255) gCATCGAAACCGGTGAAGTGGTTTATTTCAAAGcc > 1:13208059/1‑35 (MQ=255) cATCGAAACCGGTGAAGTGGTTTATTTCAAAGccc > 1:17816531/1‑35 (MQ=255) cATCGAAACCGGTGAAGTGGTTTATTTCAAAGccc > 1:18147066/1‑35 (MQ=255) cATCGAAACCGGTGAAGTGGTTTATTTCAAAGccc < 1:17623797/35‑1 (MQ=255) cATCGAAACCGGTGAAGTGGTTTATTTCAAAGcac < 1:12634063/35‑3 (MQ=255) aTCGAAACCGGTGAAGTGGTTTATTTCAAAGCCcg > 1:18796495/1‑35 (MQ=255) aTCGAAACCGGTGAAGTGGTTTATTTCAAAGCCcg < 1:10384684/35‑1 (MQ=255) aTCGAAACCGGTGAAGTGGTTTATTTCAAAGCCcg < 1:641782/35‑1 (MQ=255) aTCGAAACCGGTGAAGTGGTTTATTTCAAAGCCcg < 1:3932434/35‑1 (MQ=255) aTCGAAACCGGTGAAGTGGTTTATTTCAAAGCCcg < 1:4811031/35‑1 (MQ=255) tCGAAACCGGTTAAGTGGTTTATTTCAAAGCCcgc > 1:13816712/1‑35 (MQ=255) tCGAAACCGGTGAAGTGGTTTATTTCAAAGCCcgc < 1:6684462/35‑1 (MQ=255) cGAAACCGGTGAAGTGGTTTATTTCAAAGCCcgcg < 1:11640535/35‑1 (MQ=255) | ATGGCGCGGTGGTGGGTTGTACCGCACTGTGCATCGAAACCGGTGAAGTGGTTTATTTCAAAGCCCGCG > REL606/737218‑737286 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |