New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2176060 =63 (0.610)6 (0.080) 3/36 NT 7.3% coding (49/933 nt) pbpG D‑alanyl‑D‑alanine endopeptidase
?REL606 3882315 = 105 (1.360)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG‑‑‑‑‑‑‑‑‑  <  REL606/2176099‑2176060
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGGGGGTTTT  >  REL606/3882315‑3882323
                                                 
TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT                <  1:9496217/35‑1
TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT                >  1:2565770/1‑35
TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT                <  1:3552068/35‑1
TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT                <  1:6978025/35‑1
TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT                <  1:17013222/35‑1
TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT                <  1:12371155/35‑1
TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT                >  1:14923499/1‑35
 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG               >  1:2510682/1‑35
 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG               <  1:18233720/35‑1
 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG               >  1:18189799/1‑35
 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG               <  1:17702392/35‑1
 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG               >  1:17531771/1‑35
 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG               <  1:604859/35‑1
 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG               <  1:6179655/35‑1
 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG               >  1:11933531/1‑35
 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG               <  1:10531368/35‑1
 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG               <  1:890434/35‑1
 TTCGAGTTTCTTTATTTAGCCTGGCACTGATGCTG               <  1:12426024/35‑1
  TCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGG              <  1:6870002/35‑1
  TCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGG              <  1:18344017/35‑1
  TCGAGTTTATTTATTTAGCCTGGCCCTGATGCTGG              <  1:20169848/35‑1
   CGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGC             <  1:4803610/35‑1
   CGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGC             >  1:4318806/1‑35
   CGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGC             <  1:11812826/35‑1
   CGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGC             >  1:10586280/1‑35
   CGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGC             <  1:7545343/35‑1
   CGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGC             <  1:10381618/35‑1
    GAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCT            <  1:240346/35‑1
    GAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCT            >  1:19238935/1‑35
    GAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCT            >  1:17831954/1‑35
     nGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG           <  1:9635932/34‑1
     AGTTTCTTTATTTAGCCTGGCCCTGATGCTGTCTG           >  1:4756469/1‑35
     AGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG           >  1:9588893/1‑35
     AGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG           >  1:20149705/1‑35
     AGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG           >  1:18663671/1‑35
     AGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG           >  1:3695799/1‑35
     AGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG           <  1:1363674/35‑1
      GTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTGG          >  1:15758682/1‑35
         TCTTTATTTAGCCTGGCCCTGATGCTGGCTGGGGG       >  1:2926373/1‑35
           TTTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGg     >  1:8719839/1‑34
           TTTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGg     >  1:18436694/1‑34
           TTTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGg     >  1:783790/1‑34
           TTTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGg     >  1:15309591/1‑34
           TTTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGg     >  1:5785664/1‑34
            TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGgg    >  1:10562893/1‑33
            TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGgg    >  1:11191453/1‑33
            TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGgg    >  1:6914071/1‑33
            TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGgg    >  1:14926838/1‑33
            TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGgg    >  1:4032022/1‑33
            TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGgg    >  1:2391018/1‑33
            TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGTT    >  1:9544601/1‑35
             TATTTAGCCTGGCCCTGATGCTGGCTGGGGGGggt   >  1:2238730/1‑32
             TATTTAGCCTGGCCCTGATGCTGGCTGGGGGGggg   >  1:7651163/1‑32
             TATTTAGCCTGGCCCTGATGCTGGCTGGGGGGggg   >  1:1002430/1‑32
             TATTTAGCCTGGCCCTGATGCTGGCTGGGGGGTTT   >  1:1027871/1‑35
             TATTTAGCCTGGCCCTGATGCTGGCTGGGGGGGTT   >  1:1127276/1‑35
              ATTTAGCCTGGCCCTGATGCTGGCTGGGGGGTTTT  >  1:10409437/1‑35
              ATTTAGCCTGGCCCTGATGCTGGCTGGGGGGTGTT  >  1:5047186/1‑35
              ATTTAGCCTGGCCCTGATGCTGGCTGGGGCGTTTg  >  1:6262844/1‑34
                                                 
TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG‑‑‑‑‑‑‑‑‑  <  REL606/2176099‑2176060
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGGGGGTTTT  >  REL606/3882315‑3882323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.