New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1332936 =97 (0.940)12 (0.150) 5/38 NT 15.3% coding (710/975 nt) cysB DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding
?REL606 = 2871320 56 (0.690)coding (101/1032 nt) galR DNA‑binding transcriptional repressor

Only 100 of 126 total aligned reads displayed.

AATAATTCACCTAAAGCCAGTGAAGCTTCCCGGCTGGCTGTGCATAGTGCAATGGAGTCTCTTAGCTAT  >  REL606/2871286‑2871354
                                  |                                  
aataatTCTCCAAAAGCCAGTGAAGCTTCCCggct                                    <  1:11493958/35‑1 (MQ=25)
aataatTCACCTAAAGCCAGTGAAGCTTCCCggct                                    >  1:2197379/1‑35 (MQ=255)
aataatTCACCTAAAGCCAGTGAAGCTTCCCggct                                    >  1:16804354/1‑35 (MQ=255)
aataatTCACCAAAAGCCAGTGAAGCTTCCCggct                                    <  1:3089684/35‑1 (MQ=255)
 ataatTCACCTAAAGCCAGTGAAGCTTCCCGGCTg                                   >  1:19378839‑M2/1‑34 (MQ=255)
 ataatTCACCTAAAGCCAGTGAAGCTTCCCGGCTg                                   <  1:14392096‑M2/35‑2 (MQ=255)
 ataatTCACCTAAAGCCAGTGAAGCTTCCCGGCTg                                   <  1:6897461‑M2/35‑2 (MQ=255)
 ataatTCACCTAAAGCCAGTGAAGCTTCCCGGCTg                                   >  1:12315878‑M2/1‑34 (MQ=255)
 ataatTCACCAAAAGCCAGTGAAGCTTCCCGGCTg                                   >  1:12441485‑M2/1‑34 (MQ=255)
 ataatCCACCAAAAGCCAGTGAAGCTTCCCggctg                                   <  1:2152271/35‑1 (MQ=25)
  taatTCACCTAAAGCCAGTGAAGCTTCCCTGCTgg                                  <  1:9341445‑M2/35‑3 (MQ=255)
  taatTCACCTAAAGCCAGTGAAGCTTCCCGGCTgg                                  >  1:2488380‑M2/1‑33 (MQ=255)
  taatTCACCTAAAGCCAGTGAAGCTTCCCGGCTgg                                  >  1:11314856‑M2/1‑33 (MQ=255)
   aatTCACCTAAAGCCAGTGAAGCTTCCCGGCTggc                                 <  1:5615524‑M2/35‑4 (MQ=255)
    atTCACCTAAAGCCAGTGAAGCTTCCCGGCTggct                                <  1:7696730‑M2/35‑5 (MQ=255)
    atTCACCTAAAGCCAGTGAAGCTTCCCGGCTggct                                >  1:19404827‑M2/1‑31 (MQ=255)
    atTCACCTAAAGCCAGTGAAGCTTCCCGGCTggct                                >  1:19074617‑M2/1‑31 (MQ=255)
    atTCACCTAAAGCCAGTGAAGCTTCCCGGCTggct                                <  1:18758958‑M2/35‑5 (MQ=255)
    atTCACCTAAAGCCAGTGAAGCTTCCCGGATggct                                >  1:15293752‑M2/1‑31 (MQ=255)
    atTCACCAAAAGCCAGTGAAGCTTCCCGGCTggct                                >  1:541035‑M2/1‑31 (MQ=255)
     ttCACCTAAAGCCAGTGAAGCTTCCCGGCTggctg                               <  1:17686168‑M2/35‑6 (MQ=255)
     tccACCAAAAGCCAGTGAAGCTTCCCGgctggctg                               <  1:4200344/33‑1 (MQ=37)
      tCACCTAAAGCCATTGAAGCTTCCCGGCTggctgg                              <  1:2008120‑M2/35‑7 (MQ=255)
      tCACCTAAAGCCAGTGAAGCTTCCCGGCTggctgg                              <  1:2085084‑M2/35‑7 (MQ=255)
      tCACCTAAAGCCAGTGAAGCTTCCCGGCTGGCtgt                              <  1:7410972/35‑1 (MQ=255)
      tCACCAAAAGCCAGTGAAGCTTCCAggctggcttt                              <  1:8559655/35‑3 (MQ=25)
       cACCTAAAGCCAGTGAAGCTTCCCGGCTGGCtgtg                             <  1:7892985/35‑1 (MQ=255)
       cACCAAAAGCCAGTGAAGCTTCCCGGCTGGCtgtg                             <  1:16864258/35‑1 (MQ=255)
        aCCAAAAGCCAGTGAAGCTTCCCGGCTGGCTGTGc                            <  1:3679313/35‑1 (MQ=255)
         ccaaaaGCCAGTGAAGCTTCACGGCTGGCTGTGCa                           <  1:12895809/32‑1 (MQ=38)
         ccTAAAGCCAGTGAAGCTTCCCGGCTggctggggg                           <  1:19463014‑M2/35‑10 (MQ=255)
         ccTAAAGCCAGTGAAGCTTCCCGGCTggctggggg                           <  1:13140971‑M2/35‑10 (MQ=255)
         ccTAAAGCCAGTGAAGCTTCCCGGCTggctggggg                           <  1:11569582‑M2/35‑10 (MQ=255)
          caaaaGCCAGTGAAGCTTCCCGGCTGGCTGTGCAt                          <  1:11595229/33‑1 (MQ=255)
          cTAAAGCCAGTGAAGCTTCCCGGCTggctgggggg                          <  1:15244839‑M2/35‑11 (MQ=255)
          cTAAAGCCAGTGAAGCTTCCCGGCTggctggggga                          <  1:20190005‑M2/35‑11 (MQ=255)
           tAAAGCCAGTGAAGCTTCCCGGCTggctgggggta                         <  1:20320243‑M2/35‑12 (MQ=255)
           tAAAGCCAGTGAAGCTTCCCGGCTggctgggggta                         <  1:10503289‑M2/35‑12 (MQ=255)
           tAAAGCCAGTGAAGCTTCCCGGCTggctggggagt                         <  1:8795204‑M2/35‑12 (MQ=255)
           tAAAGCCAGTGAAGCTTCCCGGCTGGCTGTGCATa                         <  1:5999415/35‑1 (MQ=255)
           tAAAGCCAGTGAAGCTTCCCGGCTGGCTGTGCATa                         <  1:6596881/35‑1 (MQ=255)
            aaaGCCAGTGAAGCTTCCCGGCTGGCTGTGCATAg                        <  1:15148312/35‑1 (MQ=255)
             aaGCCAGTGAAGCTTCCCGGCTggctgggggtagt                       <  1:8654104‑M2/35‑14 (MQ=255)
             aaGCCAGTGAAGCTTCCCGGCTggctgggggtagt                       <  1:11925715‑M2/35‑14 (MQ=255)
             aaGCCAGTGAAGCTTCCCGGCTggctgggggtagt                       <  1:1416064‑M2/35‑14 (MQ=255)
             aaGCCAGTGAAGCTTCCCGGCTggctggggggagg                       <  1:13074805‑M2/35‑14 (MQ=255)
             aaGCCAGTGAAGCTTCCCGGCTGGCTGTGCATAGt                       <  1:19958473/35‑1 (MQ=255)
             aaGCCAGTGAAGCTTCCCGGCTGGCTGTGCATAGt                       <  1:1071615/35‑1 (MQ=255)
              aGCCAGTGAAGCTTCCCGGCTggctgggggtgggg                      <  1:5705445‑M2/35‑15 (MQ=255)
              aGCCAGTGAAGCTTCCCGGCTggctgggggtaggg                      <  1:1480182‑M2/35‑15 (MQ=255)
              aGCCAGTGAAGCTTCCCGGCTggctgggggtaggg                      <  1:9313639‑M2/35‑15 (MQ=255)
              aGCCAGTGAAGCTTCCCGGCTGGCTGTGCATAGTg                      <  1:11277609/35‑1 (MQ=255)
              aGCCAGTGAAGCTTCCCGGCTGGCTGGGGATAGTg                      >  1:4916881/1‑35 (MQ=25)
              aGCCAGTGAAGCTTCCCGGCTGGCTGGGCGTaagg                      >  1:14332533/1‑32 (MQ=21)
               gCCAGTGAAGCTTCCCGGCTggctgggggtagtgg                     <  1:16441864‑M2/35‑16 (MQ=255)
               gCCAGTGAAGCTTCCCGGCTggctgggggtagggg                     <  1:3395557‑M2/35‑16 (MQ=255)
               gCCAGTGAAACTTCCCAGCTGGCTGTGCATAGTGc                     <  1:1737637/35‑1 (MQ=37)
                ccAGTGAAGCTTCCCGGCTGGCTGTGCATAGTGCa                    <  1:10117343/35‑1 (MQ=255)
                ccAGTGAAGCTTCCCGGCTGGCTGTGCATAGTGCa                    <  1:3492190/35‑1 (MQ=255)
                ccAGTGAAGCGTCCCGGCTGGCTGTGCATAGTGCa                    <  1:3509697/35‑1 (MQ=255)
                 cAGTGAAGCTTCCCGGCTGTCTGGGGGTAGTGCaa                   >  1:13534838/1‑35 (MQ=16)
                 cAGTGAAGCTTCCCGGCTGGCTTTGCATAGTGCaa                   >  1:10011456/1‑35 (MQ=255)
                 cAGTGAAGCTTCCCGGCTGGCTGTGCATAGTGCaa                   <  1:15498038/35‑1 (MQ=255)
                 cAGTGAAGCTTCCCGGCTGGCTGTGCATAGTGCaa                   <  1:10990389/35‑1 (MQ=255)
                 cAGTGAAGCTTCCCGGCTGGCTGGGGGTAGTGGaa                   >  1:18630554/1‑35 (MQ=16)
                  aGTGAAGCTTCCCGGCTGGCTGTGCATAGTGCAAt                  <  1:3713023/35‑1 (MQ=255)
                  aGTGAAGCTTCCCGGCTGGCTGTGCATAGTGCAAt                  <  1:12322391/35‑1 (MQ=255)
                  aGTGAAGCTTCCCGGCTGGCTGTGCATAGTGCAAt                  <  1:10355531/35‑1 (MQ=255)
                  aGTGAAGCTTCCCGGCTGGCTGTGCATAGTGCAAt                  <  1:18815665/35‑1 (MQ=255)
                  aGTGAAGCTTCCCGGCTGGCTGGGGGTAGTGcgaa                  >  1:16334902/1‑32 (MQ=16)
                  aGTGAAGCTTCCCGGCTGGCTGGGGGTAGTGCaaa                  >  1:5405311/1‑34 (MQ=18)
                  aGTGAAGCTTCCCGGCTGGCTGGGGGTAGTGCaaa                  >  1:19999940/1‑34 (MQ=18)
                   gTGAAGCTTCCCGGCTGGCTGTGCATAGTGCAATg                 <  1:13377588/35‑1 (MQ=255)
                   gTGAAGCTTCCCGGCTGGCTGTGCATAGTGCAATg                 <  1:10204389/35‑1 (MQ=255)
                   gTGAAGCTTCCCGGCTGGCTGGGGGTAATGCAATg                 >  1:749223/1‑35 (MQ=16)
                    tGAAGCTTCCCGGCTGGCTGTGCATAGTGCAATgg                <  1:4965697/35‑1 (MQ=255)
                     gAAGCTTCCCGGCTGGCTGTGCATAGTGCAATGGa               <  1:15059429/35‑1 (MQ=255)
                      aaGCTTCCCGGCTGGCTGTGCATAGTGCAATGGAg              <  1:19129859/35‑1 (MQ=255)
                      aaGCTTCCCGGCTGGCTGTGCATAGTGCAATGGAg              <  1:11478302/35‑1 (MQ=255)
                      aaGCTTCCCGGCTGGCTGGGGGTAGTGCAATGGAg              >  1:14992214/1‑35 (MQ=21)
                       aGCTTCCCGGCTGGCTGTGCATAGTGCAATGGAGt             <  1:18593502/35‑1 (MQ=255)
                         cTTCCCGGCTGGCTGTGCATAGTGCAATGGAGtct           <  1:1174024/35‑1 (MQ=255)
                          ttCCTGGCTGGCTGTGCATAGTGCAATGGAGtctc          <  1:11081022/35‑1 (MQ=255)
                          ttCCCGGCTGGCTGTGCATAGTGCAATGGAGtctc          <  1:3655030/35‑1 (MQ=255)
                          ttCCCGGCTGGCTGTGCATAGTGCAATGGAGtctc          <  1:2335138/35‑1 (MQ=255)
                            cccGGCTGGCTGTGCATAGTGCAATGGAGTCTCtt        <  1:6117597/35‑1 (MQ=255)
                            cccGGCTGGCTGTGCATAGTGCAATGGAGTCTCtt        <  1:12915080/35‑1 (MQ=255)
                            cccGGCTGGCTGTGCATAGTGCAATGGAGTCTCtt        <  1:1929156/35‑1 (MQ=255)
                            cccGGCTGGCTGTGCATAGTGCAATGGAGTCTCtt        <  1:20026016/35‑1 (MQ=255)
                             ccGGCTGGCTGTGCATAGTGCAATGGAGTCTCTTa       <  1:12028107/35‑1 (MQ=255)
                             ccGGCTGGCTGTGCATAGTGCAATGGAGTCTCTTa       <  1:16673364/35‑1 (MQ=255)
                             ccGGCTGGCTGTGCATAGTGCAATGGAGTCTCTTa       <  1:184666/35‑1 (MQ=255)
                             ccGGCTGGCTGTGCATAGTGCAATGGAGTCTCTTa       <  1:9532596/35‑1 (MQ=255)
                              cGGCTGGCTGTGCATAGTGCAATGGAGTCTCTTAg      <  1:2491979/35‑1 (MQ=255)
                               ggctggctTTGCATAGTGCAATGGAGTCTCTTAGc     >  1:12705816/1‑35 (MQ=255)
                               ggctggctGTGCATAGTGCAATGGAGTCTCTTAGc     <  1:14728311/35‑1 (MQ=255)
                                gctggctgTGCATAGTGCAATGGAGTCTCTTAGCt    <  1:17773874/35‑1 (MQ=255)
                                  tggctgTGCATAGTGCAATGGAGTCTCTTAGCTAt  <  1:4956363/35‑1 (MQ=255)
                                  tggctgTGCATAGTGCAATGGAGTCTCTTAGCTAt  <  1:17252640/35‑1 (MQ=255)
                                  tggctgTGCATAGTGCAATGGAGTCTCTTAGCTAt  <  1:8263830/35‑1 (MQ=255)
                                  |                                  
AATAATTCACCTAAAGCCAGTGAAGCTTCCCGGCTGGCTGTGCATAGTGCAATGGAGTCTCTTAGCTAT  >  REL606/2871286‑2871354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.