New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1822767 = | 84 (0.820) | 11 (0.140) | 3/38 | NT | 13.7% | coding (1422/1962 nt) | topB | DNA topoisomerase III |
? | REL606 | = 2900727 | 72 (0.890) | coding (86/771 nt) | yqeC | hypothetical protein |
ACGCCACTGCCTGTGGTGGCGAAAGGCGATGAGTTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1822805‑1822767 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgGGGGGAAAACCAGCTTGCTTTTTTGGCTGGCAGA < REL606/2900727‑2900694 ACGCCCCTGCCTGTGGTGGCGAAAGGCGATGAGTT < 1:10750318/35‑1 ACGCCACTGCCTTTGGTGGCGAAAGGCGATGAGTT > 1:17709826/1‑35 ACGCCACTGCCTGTGGTTGCGAAAGGCGATGAGTT > 1:15266922/1‑35 GCCGCTGCCTGTGGTGGCGAAAGGCGATGAGTTGC < 1:502157/35‑1 GCCACTGCATGTGGTGGCGAAAGGCGATGAGTTGC < 1:17101182/35‑1 cccCTGCCTGTGGTGGCGAAAGGCGATGAGTTGCT < 1:4776402/32‑1 cccCTGCCTGTGGTGGCGAAAGGCGATGAGTTGCT < 1:18172273/32‑1 CCACTGCCTGTGGTGGCGAAAGGCGATGAGGTGCT > 1:1989452/1‑35 ccCTGCCTGTGGTGGCGAAAGGCGATGAGTTGCTG < 1:5197098/33‑1 CACTGCCTGTGGTGGCGAAAGGCGATGAGTTGCTG > 1:9602157/1‑35 CACTGCCTGTGGTGGCGAAAGGCGATGAGGTGCTG > 1:8474544/1‑35 CTGCCTGTGGTGGCGAAAGGCGATGAGTTGCTGGG > 1:827183/1‑35 GCCTGTGGTGGCGAAAGGCGATGAGTTGCTGGGGG > 1:661719/1‑35 CCTGTGGTGTCGAAAGGCGATGAGTTGCTGGGGGG > 1:7024687/1‑35 CTGTGGTGGCGAAAGGCGATGAGTTGCTGGGGGGA > 1:8194129/1‑35 CTGTGGTGGCGAAAGGCGATGAGTTGCTGGGGGGA > 1:6025834/1‑35 CTGTGGTGGCGAAAGGCGATGAGTTGCTGCGGGGA > 1:12001901/1‑35 GTGGTGGCGAAAGGCGATGAGTTGCTGGGGGGAAA > 1:9486271/1‑35 TGGTGGCGAAAGGCGATGAGTTGCTGGGGGGAAAA > 1:18405528/1‑35 TGGTGGCGAAAGGCGATGAGTTGCTGGGGGGAAAA > 1:9265414/1‑35 GGTGGCGAAAGGCGATGAGTTGCTGGGGGGAAAAg > 1:1851664/1‑34 GGTGGCGAAAGGCGATGAGTTGCTGGGGGGAAAAg > 1:19007127/1‑34 GGTGGCGAAAGGCGATGAGTTGCTGGGGGGAAAAg > 1:15097909/1‑34 GTGGCGAAAGGCGATGAGTTGCTGGGGGGAAAAag > 1:16198305/1‑33 TGGCGAAAGGCGATGAGTTGCTGGGGGGAAAAggg > 1:13871513/1‑32 TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG < 1:854092/35‑1 TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG > 1:5307588/1‑35 TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG > 1:2522236/1‑35 TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG < 1:20134874/35‑1 TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG > 1:19953986/1‑35 TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG > 1:15488413/1‑35 TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG < 1:17503518/35‑1 GGGGGGAAAACCAGCTTGCTTTTTTGGCTGGGAGc > 1:13354295/1‑34 ACGCCACTGCCTGTGGTGGCGAAAGGCGATGAGTTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1822805‑1822767 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgGGGGGAAAACCAGCTTGCTTTTTTGGCTGGCAGA < REL606/2900727‑2900694 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |