New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2389861 = | 74 (0.720) | 12 (0.150) | 5/38 | NT | 19.1% | coding (116/825 nt) | mepA | penicillin‑insensitive murein endopeptidase |
? | REL606 | = 2877079 | 43 (0.530) | intergenic (‑276/+39) | araE/kduD | arabinose transporter/2‑deoxy‑D‑gluconate 3‑dehydrogenase |
AACCCAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2389899‑2389861 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagGGTTTTTTATATCTGTAGATCATCATAATCCATA < REL606/2877079‑2877046 AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG < 1:15766690/35‑1 AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG > 1:16479234/1‑35 AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG > 1:13988346/1‑35 AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG > 1:13163069/1‑35 AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG < 1:1243/35‑1 AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG > 1:18951707/1‑35 AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG > 1:4252470/1‑35 AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG > 1:6608684/1‑35 cCCCAACCTGTGCCGGGTAGCGCACAATCGATAGG < 1:3093037/34‑1 ACCCAACCTGTGCCGGGTAGCGCACAATCGATAGG > 1:1104978/1‑35 ACCCAACCTGTGCCGGGTAGCGCACAATCGATAGG > 1:297792/1‑35 ACCCAACCTGTGCCGGGTAGCGCACAATCGATAGG > 1:11860040/1‑35 ACCCAACCTGTGCCGGGTAGCGCACAATCGATAGG > 1:1044003/1‑35 ACCCAACCTGTGCCGGGTAGCGCACAATCGATAGG > 1:12335165/1‑35 CCCAACCTGTGCCGGGTAGCGCACAATCGATAGGC < 1:1750813/35‑1 CCAGCCTGTGCCGGGTAGCGCACAATCGATAGGCA < 1:13439752/35‑1 CCAACCTGTGCCGGGTAGCGCACAATCGATAGGCA > 1:6112328/1‑35 CCAACCTGTGCCGGGTAGCGCACAATCGATAGGCA > 1:1875428/1‑35 CCAACCTGTGCCGGGTAGCGCACAATCGATAGGCA > 1:12908951/1‑35 CCAACCTGTGCCGGGTAGCGCACAATCGATAGGCA > 1:5751240/1‑35 CCAACCTGTGCCGGGTAGCGCACAATCGATAGGCA > 1:6443851/1‑35 CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG < 1:17478388/35‑1 CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG > 1:17082418/1‑35 CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG < 1:5750520/35‑1 CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG > 1:8759071/1‑35 CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG < 1:10498473/35‑1 CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG < 1:10885735/35‑1 CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG < 1:10396417/35‑1 CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG > 1:1188650/1‑35 CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG < 1:10006172/35‑1 AACCTGTGCCGGGTAGCGCACAATCGATAGGCAGG > 1:16951609/1‑35 ACCTGTGCCGGGTAGCTCACAATCGATAGGCAGGG > 1:4394880/1‑35 ACCTGTGCCGGGTAGCGCACAATCGATAGGCAGGt > 1:2508952/1‑34 ACCTGTGCCGGGTAGCGCACAATCGATAGGCAGGG > 1:16658529/1‑35 CCTGTGCCGGGTAGCGCACAATCGATAGGCAGGGT > 1:18780219/1‑35 CTGTGCCGGGTAGCGCACAATCGATAGGCAGGTTT > 1:8843388/1‑35 CTGTGCCGGGTAGCGCACAATCGATAGGCAGGGTT > 1:4869064/1‑35 CTGTGCCGGGTAGCGCACAATCGATAGGCAGGGTT > 1:18615384/1‑35 CTGTGCCGGGTAGCGCACAATCGATAGGCAGGGTT > 1:1181966/1‑35 CTGTGCCGGGTAGCGCACAATCGATAGGCAGGGTT > 1:288221/1‑35 TGTGCCGGGTAGCGCACAATCGATAGGCAGGGTTT > 1:713771/1‑35 TGTGCCGGGTAGCGCACAATCGATAGGCAGGGTTT > 1:11098547/1‑35 TGTGCCGGGTAGCGCACAATCGATAGGCAGGGTTT > 1:3633388/1‑35 GTGCCGGGTAGCGCACAATCGATAGGCAGGGTTTT > 1:1201122/1‑35 GTGCCGGGTAGCGCACAATCGATAGGCAGGGTTTT > 1:15037798/1‑35 TGCCGGGTAGCGCACAATCGATAGGCAGGTTTTTT > 1:6613920/1‑35 TGCCGGGTAGCGCACAATCGATAGGCAGGGTTTTT > 1:9423415/1‑35 GCCGGGTAGCGCACAATCGATAGGCAGGGTTTTTT > 1:2873065/1‑35 GCCGGGTAGCGCACAATCGATAGGCAGGGTTTTTT > 1:7478569/1‑35 GCCGGGTAGCGCACAATCGATAGGCAGGGTTTTTT > 1:16799864/1‑35 CCGGGTAGCGCACAATCGATAGGCAGGGTTTTTTA > 1:4856770/1‑35 CGGGTAGCGCACAATCGATAGGCAGGGTTTCTTAT > 1:18057451/1‑35 GGGTAGCGCACAATCGATAGGCAGGTTTTTTTATg > 1:10160833/1‑34 GGGTAGCGCACAATCGATAGGCAGGGTTTTTTttt > 1:6828270/1‑32 GGTAGCGCACAATCGATAGGCAGGGTTTTTTATgg > 1:16829145/1‑33 GGCAGGGTTTTTTATATCTGTAGATCATCATAATC < 1:11538025/35‑1 GGCAGGGTTTTTTATATCTGTAGATCATCATAATC < 1:15567116/35‑1 GCAGGGTTTTTTATATCTGTAGATCATCATAATCC < 1:9650920/35‑1 GCAGGGTTTTTTATATCTGTAGATCATCATAATCC < 1:12556240/35‑1 GCAGGGTTTTTTATATCTGTAGATCATCATAATCC > 1:16550907/1‑35 AGGGTTTTTTATATCTGTAGATCATCATAATCCAT < 1:3532442/35‑1 AGGGTTTTTTATATCTGTAGATCATCATAATCCAT > 1:8292859/1‑35 AGGGTTTTTTATATCTGTAGATCATCATAATCCAT < 1:13161518/35‑1 AGGGTTTTTTATATCTGTAGATCATCATAATCCAT < 1:14612537/35‑1 GGGTTTTTTATATCTGTAGATCATCATAATCCATA < 1:11014321/35‑1 AACCCAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2389899‑2389861 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagGGTTTTTTATATCTGTAGATCATCATAATCCATA < REL606/2877079‑2877046 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |