New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 13453 =80 (0.780)8 (0.080) 4/44 NT 10.6% coding (1293/1917 nt) dnaK molecular chaperone DnaK
?REL606 348289 = 62 (0.660)coding (475/1212 nt) mhpT predicted 3‑hydroxyphenylpropionic transporter

Only 100 of 146 total aligned reads displayed.

TGTTCCCATTGGCGCGGCGCTGGCGGCGACACTGGGTTTCGCGGGGGCAAACTTAGCATGGCAAACGGT  >  REL606/348255‑348323
                                   |                                  
tgtTCCCATTGGCGCGGCGCTGGCGGGGACACTgg                                    >  1:18491235/1‑35 (MQ=255)
tgtTCCCATTGGCGCGGCGCTGGCGGCGACACTgg                                    <  1:3881295/35‑1 (MQ=255)
tgtTCCCATTGGCGCGGCGCTGGCGGCGACACTgg                                    <  1:11359742/35‑1 (MQ=255)
 gtTCCCATTGGCGCGGCGCTGGCGGGGGCACTggg                                   >  1:13508733/1‑35 (MQ=25)
 gtTCCCATTGGCGCGGCGCTGGCGGCGACACTggg                                   <  1:3648538/35‑1 (MQ=255)
 gtTCCCATTGGCGCGGCGCTGGCGGCGACACTggg                                   <  1:11489568/35‑1 (MQ=255)
 gtTCCCATTGGCGCGGCGCCGGCGGCGACACTggg                                   <  1:9380792/35‑1 (MQ=255)
 ctgcagcacatggatggttaccgcagactggttgg                                    >  1:2153666‑M2/35‑35 (MQ=255)
 ctgcagcacatggatggttaccgcagactggttgg                                    >  1:9127114‑M2/35‑35 (MQ=255)
 ctgcagcacatggatggttaccgcagactggttgg                                    >  1:9451464‑M2/35‑35 (MQ=255)
  ttCCCATTGGCGCGGCGCTGGCGGCGACTCTgggg                                  >  1:9821051/1‑34 (MQ=255)
  tgcagcacatggatggttaccgcagactggttggg                                   >  1:6538892‑M2/34‑35 (MQ=255)
  tgcagcacatggatggttaccgcagactgggtggg                                   >  1:4528615‑M2/34‑35 (MQ=255)
   tCCCATTGGCGCGGCGCTGGCGGGGGCACTggggt                                 >  1:13783577/1‑33 (MQ=25)
   tCCCATTGGCGCGGCGCTGGCGGGGGCACCggggt                                 >  1:1106666/1‑33 (MQ=18)
   tCCCATTGGCGCGGCGCTGGCGGCGACACTGGGtt                                 <  1:7841241/35‑1 (MQ=255)
   tCCCATTGGAGCGGCGCTGGCGGCGACACTGGGtt                                 <  1:17116714/35‑1 (MQ=255)
   gcagcacatggatggttaccgcagactggttgGGt                                  >  1:13332162‑M2/33‑35 (MQ=255)
    cccATTGGCGCGGCGCTGGCGGCGACACTGGGttt                                <  1:13684645/35‑1 (MQ=255)
    cagcacatggatggttaccgcagactggttgggct                                 >  1:1486835‑M2/32‑33 (MQ=255)
    cagcacatggatggttaccgcagactggttgGGtt                                 >  1:17167701‑M2/32‑35 (MQ=255)
    cagcacatggatggttaccgcagactggttgGGtt                                 >  1:19286405‑M2/32‑35 (MQ=255)
     agcacatggatggttaccgcagactggttgGgttc                                >  1:13714106‑M2/31‑34 (MQ=255)
      cATTGGCGCGGCGCTGGCGGGGGCACCTGGGtttg                               >  1:7993658/1‑34 (MQ=12)
      cATTGGCGCGGCGCTGGCGGCGACACTGGGTTTcg                              <  1:8086219/35‑1 (MQ=255)
      cATTGGCGCGGCGCTGGCGGCGACACTGGGTTTcg                              <  1:20141982/35‑1 (MQ=255)
      cATTGGCGCGCCGCTGGCGGCGACACTGGGTTTcg                              <  1:14500007/35‑1 (MQ=255)
       cacatggatggttaccgcagactggttgggttttt                              >  1:1459888‑M2/29‑33 (MQ=255)
       atgggcgcggcgcTGGCGGCGACACTGGGTTTcgc                             <  1:12928413/32‑1 (MQ=255)
       aTTGGCGCGGCGCTGGCGGCGACACTGGGTTTcgc                             <  1:8763868/35‑1 (MQ=255)
        ttGGCGCGGCGCTGGCGGCGACACTGGGTTTcgcg                            <  1:508092/35‑1 (MQ=255)
        ttGGCGCGGCGCTGGCGGCGACACTGGGTTTcgcg                            <  1:3745648/35‑1 (MQ=255)
        ttGGCGCGGCGCTGGCGGCGACACTGGGTTTcgcg                            <  1:18916907/35‑1 (MQ=255)
        acatggatggttaccgcagactggttgggtttacc                             >  1:20574339‑M2/28‑32 (MQ=255)
        acatggatggttaccgcagactggttgGGTTTcgc                             >  1:11981340‑M2/28‑35 (MQ=255)
        acatggatggttaccgcagactggttgGGTTTcgc                             >  1:15325084‑M2/28‑35 (MQ=255)
        acatggatggttaccgcagactggttgGGTTCcgc                             >  1:11921722‑M2/28‑35 (MQ=255)
         tGGCGCGGCGCTGGCGGCGACACTGGGTTTCGCgg                           <  1:12325904/35‑1 (MQ=255)
         gggcgcggcgcTGGCGGCGACACTGGGTTTCGCgg                           <  1:12559637/34‑1 (MQ=255)
           tggatggttaccgcagactggttgGGTTTCGCggg                          >  1:5906861‑M2/25‑35 (MQ=255)
            ggatggttaccgcagactggttgGGTTTCGCgggg                         >  1:8985988‑M2/24‑35 (MQ=255)
             gcggcgcTGGCGGCGACACTGGGTTTCGCGGGGGc                       <  1:7736133/35‑1 (MQ=255)
             gcggcgcTGGCGGCGACACTGGGTTTCGCGGGGGc                       <  1:2579203/35‑1 (MQ=255)
              cggcgcTGGCGGCGACACTGGGTTTCGCGGGGGCa                      <  1:4066417/35‑1 (MQ=255)
               tggttaccgcagactggttgGGTTTCgcgggggag                      >  1:1791925‑M2/21‑33 (MQ=255)
               ggcgcTGGCGGCGACACTGGGTTTCGCGGGGGCaa                     <  1:20275570/35‑1 (MQ=255)
                gcgcTGGCGGCGACACTGGGTTTCGCGGGGGCaaa                    <  1:18049582/35‑1 (MQ=255)
                gcgcTGGCGGCGACACTGGGTTTCGCGGGGGCaaa                    <  1:1257112/35‑1 (MQ=255)
                gcgcTGGCGGCGACACTGGGTTTCGCGGGGGCaaa                    <  1:18732982/35‑1 (MQ=255)
                gcgcTGGCGGCGACACTGGGTTTCGCGGGGGCaaa                    <  1:13839054/35‑1 (MQ=255)
                  gcgggcggcGACACTGGGTTTCGCGGGGGCAAACt                  <  1:16541637/32‑1 (MQ=255)
                  gcTGGCGGCGACACTGGGTTTCGCGGGGGCAAACt                  <  1:8768412/35‑1 (MQ=255)
                  gcTGGCGGCGACACTGGGTTTCGCGGGGGCAAACt                  <  1:19957854/35‑1 (MQ=255)
                   cTGGCGGCGACACTGGGTTTCGCGGGGGCAAACtt                 >  1:16283371/1‑35 (MQ=255)
                   cTGGCGGCGACACTGGGTTTCGCGGGGGCAAACtt                 <  1:8994924/35‑1 (MQ=255)
                    tGGCGGCGACACTGGGTTTCGCGGGGGCAAACTTa                <  1:19566794/35‑1 (MQ=255)
                    tGGCGGCGACACTGGGTTTCGCGGGGGCAAACTTa                <  1:16240790/35‑1 (MQ=255)
                    tGGCGGCGACACTGGGTTTCGCGGGGGCAAACTTa                <  1:12754116/35‑1 (MQ=255)
                    tGGCGGCGACACTGGGGTTCGCGGGGGCAAACTTa                >  1:18860233/1‑35 (MQ=255)
                     ggcggcGACACTGGGTTTCGCGGGGGCAAACTTAg               <  1:4776853/35‑1 (MQ=255)
                     ggcggcGACACTGGGTTTCGCGGGGGCAAACTTAg               >  1:6110376/1‑35 (MQ=255)
                     ggcggcGACACTGGGTTTCGCGGGGGCAAACTTAg               <  1:9519450/35‑1 (MQ=255)
                     ggcggcGACACTGGGTTTCGCGGGGGCAAACTTAg               >  1:12990890/1‑35 (MQ=255)
                     ggcggcGACACTGGGGTTCGCGGGGGCAAACTTAg               >  1:1448183/1‑35 (MQ=255)
                      gcggcgACACTGGGTTTCGCGGGGGCAAACTTAGc              <  1:4681917/35‑1 (MQ=255)
                      gcggcgACACTGGGTTTCGCGGGGGCAAACTTAGc              >  1:13879691/1‑35 (MQ=255)
                      gcggcgACACTGGGTTTCGCGGGGGCAAACTTAGc              <  1:11724280/35‑1 (MQ=255)
                       cggcgACACTGGGTTTCGCGGGGGCAAACTTAGCn             >  1:10252311/1‑35 (MQ=255)
                       cggcgACACTGGGTTTCGCGGGGGCAAACTTAGCa             <  1:18537006/35‑1 (MQ=255)
                        ggcgACACTGGGTTTCGCGGGGGCAAACTTAGCAt            >  1:9197921/1‑35 (MQ=255)
                        ggcgACACTGGGTTTCGCGGGGGCAAACTTAGCAt            >  1:9089827/1‑35 (MQ=255)
                         gcgAAACTGGGTTTCGCGGGGGCAAACTTAGCATg           <  1:8423280/35‑1 (MQ=255)
                          cgACACTGGGTTTCGCGGGGGCAAACTTAGCATgg          <  1:2711634/35‑1 (MQ=255)
                          cgACACTGGGTTTCGCGGGGGCAAACTTAGCATgg          <  1:14622388/35‑1 (MQ=255)
                          cgACACTGGGCTTCGCGGGGGCAAACTTAGCCTgc          >  1:3242114/1‑34 (MQ=25)
                           gACACTGGGTTTCGCGGGGGCAAACTTAGCATTGc         >  1:13064243/1‑35 (MQ=255)
                           gACACTGGGTTTCGCGGGGGCAAACTTAGCATGGc         <  1:12388649/35‑1 (MQ=255)
                           gACACTGGGTTTCGCGGGGGCAAACTTAGCATGGc         >  1:19719289/1‑35 (MQ=255)
                           gACACTGGGTTTCGCGGGGGCAAACTTAGCATGGc         <  1:932814/35‑1 (MQ=255)
                            acacTTGGTTTCGCGGGGGCAAACTTAGCATGGCa        >  1:12604801/1‑35 (MQ=255)
                            acacTGGGTTTCGCGGGGGCAAACTTAGCATGGCa        <  1:836059/35‑1 (MQ=255)
                            acacTGGGTTTCGCGGGGGCAAACTTAGCATGGCa        <  1:15052850/35‑1 (MQ=255)
                            acacTGGGTTTCGCGGGGGCAAACTTAGCATGGCa        >  1:15295292/1‑35 (MQ=255)
                             cacTGGGTTTCGCGGGGGCAAACTTAGCATGGCaa       <  1:12407915/35‑1 (MQ=255)
                              acTGGGTTTCGCGGGGGCAAACTTAGCATGGCaaa      >  1:2470544/1‑35 (MQ=255)
                              acTGGGTTTCGCGGGGGCAAACTTAGCATGGCaaa      <  1:12549569/35‑1 (MQ=255)
                                cTGGGTTTCGCGGGGGCAAACTTAGCATGGCAAAc     <  1:33109/35‑1 (MQ=255)
                                cTGGGTTTCGCGGGGGCAAACTTAGCATGGCAAAc     <  1:17209420/35‑1 (MQ=255)
                                cTGGGTTTCGCGGGGGCAAACTTAGCATGGCAAAc     <  1:8653497/35‑1 (MQ=255)
                                cTGGGTTTCGCGGGGGCAAACTTAGCATGGCAAAc     >  1:19371715/1‑35 (MQ=255)
                                cTGGGTTTCGCGGGGGCAAACTTAGCATGGCAAAc     <  1:5844792/35‑1 (MQ=255)
                                 tgGGTTTCGCGGGGGCAAACTTAGCATGGCAAACg    >  1:1965432‑M2/3‑35 (MQ=255)
                                 tgGGTTTCGCGGGGGCAAACTTAGCATGGCAAACg    <  1:16852242‑M2/33‑1 (MQ=255)
                                  gGGTTTCGCGGGGGCAAACTTAGCATGGCAAACgg   >  1:1927346‑M2/2‑35 (MQ=255)
                                  gGGTTTCGCGGGGGCAAACTTAGCATGGCAAACgg   >  1:18772612‑M2/2‑35 (MQ=255)
                                  gGGTTTCGCGGGGGCAAACTTAGCATGGCAAACgg   >  1:6176963‑M2/2‑35 (MQ=255)
                                  gGGTTTCGCGGGGGCAAACTTAGCATGGCAAACgg   >  1:6560769‑M2/2‑35 (MQ=255)
                                  gGGTTTCGCGGGGGCAAACTTAGCATGGCAAACgg   <  1:10415504‑M2/34‑1 (MQ=255)
                                   ggTTTCGCGGGGGCAAACTTAGCATGGCAAACGgt  <  1:5864178/35‑1 (MQ=255)
                                   ggTTTCGCGGGGGCAAACTTAGCATGGCAAACGgt  <  1:128543/35‑1 (MQ=255)
                                   |                                  
TGTTCCCATTGGCGCGGCGCTGGCGGCGACACTGGGTTTCGCGGGGGCAAACTTAGCATGGCAAACGGT  >  REL606/348255‑348323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.