New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1349554 = | 66 (0.640) | 10 (0.130) | 4/36 | NT | 18.6% | intergenic (‑146/+222) | fabI/ycjD | enoyl‑(acyl carrier protein) reductase/hypothetical protein |
? | REL606 | = 3574369 | 38 (0.490) | coding (1504/2043 nt) | prlC | oligopeptidase A |
Only 100 of 148 total aligned reads displayed.
AGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAACCC > REL606/1349520‑1349588 | caggctcccagcaccagttttccataaactgactc < 1:594455‑M1/1‑1 (MQ=255) aGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGc > 1:7667764/1‑35 (MQ=255) aGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGc < 1:1686412/35‑1 (MQ=255) aGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGc < 1:19081025/35‑1 (MQ=255) aGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGc < 1:9685037/35‑1 (MQ=255) gCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCg < 1:10804958/35‑1 (MQ=255) gCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCg < 1:15478128/35‑1 (MQ=255) agtctcccagcaccagttttccataaactgactCg > 1:315647‑M1/34‑35 (MQ=255) aggctcccagcaccagttttccataaactgactCg < 1:4473084‑M1/2‑1 (MQ=255) aggctcccagcaccagttttccataaactgactCg < 1:16756993‑M1/2‑1 (MQ=255) aggctcccagcaccagttttccataaactgactCg < 1:8409355‑M1/2‑1 (MQ=255) aggctcccagcaccagttttccataaactgactCg > 1:17175787‑M1/34‑35 (MQ=255) aggatcccagcaccagttttccataaactgactCg > 1:9295601‑M1/34‑35 (MQ=255) ggctcccagcaccagttttccataaactgactCgg < 1:3605327‑M1/3‑1 (MQ=255) ggctcccagcaccagttttccataaactgactCgg > 1:11599565‑M1/33‑35 (MQ=255) cTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCgg > 1:15034809/1‑35 (MQ=255) cTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCgg > 1:19884286/1‑35 (MQ=255) cTATAGTTGCCAGGTCCGACAGGAGCAGGCTGCgg < 1:4204050/35‑1 (MQ=255) tataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGc > 1:8306999/1‑35 (MQ=255) tataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGc < 1:8492765/35‑1 (MQ=255) tataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGc < 1:2187191/35‑1 (MQ=255) tataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGc < 1:378111/35‑1 (MQ=255) tataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGc < 1:10606507/35‑1 (MQ=255) gctcccagcaccagttttccataaactgactCGGc < 1:13374989‑M1/4‑1 (MQ=255) gctcccagcaccagttttccataaactgactCGGc > 1:335257‑M1/32‑35 (MQ=255) gctcccagcaccagttttccataaactgactCGGc < 1:15582757‑M1/4‑1 (MQ=255) ctcccagcaccagttttccataaactgactCGGCa < 1:8262611‑M1/5‑1 (MQ=255) ctcccagcaccagttttccataaactgactCGGCa < 1:12985701‑M1/5‑1 (MQ=255) ataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCa < 1:12743456/35‑1 (MQ=255) ataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCa > 1:6078453/1‑35 (MQ=255) ataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCa > 1:7440003/1‑35 (MQ=255) tcccagcaccagttttccataaactgactCGGCAg < 1:11582145‑M1/6‑1 (MQ=255) tcccagcaccagttttccataaactgactCGGCAg > 1:16123231‑M1/30‑35 (MQ=255) tcccagcaccagttttccataaactgactCGGCAg < 1:20057103‑M1/6‑1 (MQ=255) taGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAg > 1:15716331/1‑35 (MQ=255) taGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAg < 1:11834659/35‑1 (MQ=255) taGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAg > 1:17329850/1‑35 (MQ=255) tgTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgn < 1:4833544/34‑1 (MQ=255) cccagcaccagttttccataaactgactCGGCAgg < 1:15692893‑M1/7‑1 (MQ=255) aGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgg < 1:19324640/35‑1 (MQ=255) aGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgg < 1:17043146/35‑1 (MQ=255) aGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgg < 1:14739969/35‑1 (MQ=255) gTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAggg > 1:853651/1‑35 (MQ=255) gTTGCCAGGTCCGACCGGAGAAGGCTGCGGCAggg < 1:18842897/35‑1 (MQ=255) ccagcaccagttttccataaactgactCGGCAggg < 1:10632633‑M1/8‑1 (MQ=255) ccagcaccagttttccataaactgactCGGCAggg < 1:4546702‑M1/8‑1 (MQ=255) ttGCCAGGTCCGACCGGAGCAGGCTGCGGCAgggg < 1:6725099/35‑1 (MQ=255) ttGCCAGGTCCGACCGGAGCAGGCTGCGGCAgggg > 1:13093582/1‑35 (MQ=255) cagcaccagttttccataaactgactCGGCAgggg < 1:4121101‑M1/9‑1 (MQ=255) tGCCAGGTCCGACCGGAGCAGGCTGCGGCAggggg > 1:11344249/1‑35 (MQ=255) tGCCAGGTCCGACCGGAGCAGGCTGCGGCAggggg < 1:6363807/35‑1 (MQ=255) tGCCAGGTCCGACCGGAGCAGGCTGCGGCAcgggg > 1:4811569/1‑35 (MQ=255) agcaccagttttccataaactgactCGGCAggggg < 1:19629439‑M1/10‑1 (MQ=255) gcaccagttttccataaactgactCGGCAgggggg < 1:754006‑M1/11‑1 (MQ=255) gCCAGGTCCGACCGGAGCAGGCTGCGGCAgggggg < 1:13281633/35‑1 (MQ=255) gCCAGGTCCGACCGGAGCAGGCTGCGGCAgggggg > 1:16848548/1‑35 (MQ=255) ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg < 1:15582865/35‑1 (MQ=255) ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg < 1:16468888/35‑1 (MQ=255) ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg > 1:8298771/1‑35 (MQ=255) ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg < 1:12108911/35‑1 (MQ=255) caccagttttccataaactgactCGgcaggggtgg < 1:14999080‑M1/12‑4 (MQ=255) caccagttttccataaactgactCGGCAggggggg < 1:3555004‑M1/12‑1 (MQ=255) cAGGTCCGACCGGAGCAGGCTGCGGCAgggggggg > 1:15183739/1‑34 (MQ=255) cAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgc < 1:9004347/35‑1 (MQ=255) cAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgc < 1:5718092/35‑1 (MQ=255) accagttttccataaactgactCGGCagggggggg < 1:15511621‑M1/13‑2 (MQ=255) accagttttccataaactgactCGGCAGGGGGGgc < 1:17329054‑M1/13‑1 (MQ=255) accagttttccataaactgactCGGCAGGGGGGgc < 1:764330‑M1/13‑1 (MQ=255) aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcg > 1:13964604/1‑35 (MQ=255) aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcg > 1:5485782/1‑35 (MQ=255) aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcg < 1:13779952/35‑1 (MQ=255) aGGTCCGACCCGAGCAGGCTGCGGCAGGGGGGgcg > 1:14697133/1‑35 (MQ=255) ggTCCGACCGGAGCAGGCTGCTGCAGGGGGGgcgc > 1:7161058/1‑35 (MQ=255) gTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCt < 1:9285842/35‑1 (MQ=255) gTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCt < 1:8089477/35‑1 (MQ=255) tCCGACCGGAGCAGGCTGCGGCAGGGGGGgggcct > 1:11549064/1‑33 (MQ=37) tCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCtt < 1:14264973/35‑1 (MQ=255) ttttccataaactgactCGGCAGGGGGGGCgctcc < 1:13773806‑M1/18‑3 (MQ=255) ccGACCGGAGCAGGCTGCGGCAGGGGGGGGGCttt > 1:16279467/1‑35 (MQ=255) gACCGGAGCAGGCTGCGGCAGGGGGGGGGCgtttt > 1:9821861/1‑34 (MQ=37) gACCGGAGCAGGCTGCGGCAGGGGGGGGGCgtttt > 1:6356249/1‑34 (MQ=37) aCCGGAGCAGGCTGCGGCAGGGGGGGGGCcttttt > 1:12804149/1‑33 (MQ=25) aCCGGAGCAGGCTGCGGCAGGGGGGGCGCTTTTcc < 1:37706/35‑1 (MQ=255) aCCGGAGCAGGCTGAGGCAGGGGGGGCGCTTTTcc < 1:14018712/35‑1 (MQ=255) ccGGAGCAGGCTGCGGCAGGGGGGGGGGttttttt > 1:19698810/1‑32 (MQ=25) ccGGAGCAGGCTGCGGCAGGGGGGGGGCctttttt > 1:1699499/1‑32 (MQ=25) gAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTc < 1:4466059/35‑1 (MQ=255) aggaGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCa < 1:17838833/32‑1 (MQ=255) aGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCa < 1:13279778/35‑1 (MQ=255) gCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCAc < 1:1942769/35‑1 (MQ=255) gCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCAc < 1:2827788/35‑1 (MQ=255) aGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCAccc < 1:13581018/35‑1 (MQ=255) ggCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCt < 1:14436043/35‑1 (MQ=255) gCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTa < 1:2363207/35‑1 (MQ=255) gCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTa < 1:3315506/35‑1 (MQ=255) cTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTaa < 1:7972947/35‑1 (MQ=255) cTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTaa < 1:15810175/35‑1 (MQ=255) gCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAAcc < 1:8836544/35‑1 (MQ=255) CGGCAGGGGGGGCGCTTTTCCCCTCACCCTAAccc > 1:6186598‑M1/1‑35 (MQ=255) CGGCAGGGGGGGCGCTTTTCCCATCACCCTAAccc > 1:4555014‑M1/1‑35 (MQ=255) | AGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAACCC > REL606/1349520‑1349588 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |