New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 105493386 (0.840)11 (0.120) 4/44 NT 9.8% coding (103/1545 nt) appC cytochrome bd‑II oxidase, subunit I
?REL606 = 3766502 123 (1.310)coding (1206/1206 nt) gltS glutamate transporter

TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1054898‑1054933
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taAAAATGAAAAAGCGTCGGAAGGAACCGGAAACGC  <  REL606/3766502‑3766469
                                                                      
TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT                                     >  1:9423750/1‑35
TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT                                     >  1:12228791/1‑35
TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT                                     <  1:5338314/35‑1
TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT                                     >  1:4679660/1‑35
TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT                                     >  1:3524121/1‑35
TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT                                     <  1:3277287/35‑1
TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT                                     >  1:16613384/1‑35
TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT                                     >  1:1820345/1‑35
 ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA                                    >  1:11337468/1‑35
 ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA                                    >  1:8675965/1‑35
 ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA                                    <  1:4665715/35‑1
 ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA                                    >  1:1408691/1‑35
 ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA                                    <  1:3417765/35‑1
 ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA                                    <  1:3115289/35‑1
  CCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTAA                                   >  1:9599160/1‑35
  CCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTAA                                   >  1:10285532/1‑35
   CCCTTACCCTGGGGCTGATTTTTTTGCTGGCTAAA                                  >  1:13721282/1‑35
    CCTTACCCTGGGGCTGATTTTTTTGCTGGCTAAta                                 >  1:2514474/1‑33
    CCTTACCCTGGGGCTGATTTTTTTGCTGGCTAAAA                                 >  1:9718308/1‑35
    CCTTACCCTGGGGCTGATTTTTTTGCTGGCTAAAA                                 >  1:14733607/1‑35
     CTTACCCTGGGGCTGATTTTTTTGCTGGCTAAtat                                >  1:3194995/1‑32
      TTACCCTGGGGCTGATTTTTTTGCTGGCTAAAAta                               >  1:13794526/1‑33
       TACCCTGGGGCTGATTTTTTTGCTGGCTAAAATTG                              >  1:12004339/1‑35
       TACCCTGGGGCTGATTTTTTTGCTGGCTAAAAATa                              >  1:15394268/1‑34
         CCCTGGGGCTGATTTTTTTGCTGGCTAATAATGAA                            >  1:15561178/1‑35
         CCCTGGGGCTGATTTTTTTGCTGGCTAATAATGAA                            >  1:10422132/1‑35
          CCTGGGGCTGATTTTTTTGCTGGCTAATAATGAAA                           >  1:6001951/1‑35
          CCTGGGGCTGATTTTTTTGCTGGCTAAAATTGAAA                           >  1:16346057/1‑35
          CCTGGGGCTGATTTTTTTGCTGGCTAAAATTGAAA                           >  1:20311894/1‑35
          CCTGGGGCTGATTTTTTTGCTGGCTAAAAATGAAA                           >  1:70090/1‑35
            TGGGGCTGATTTTTTTGCTGGCTAAAATTGAAAAc                         >  1:8033628/1‑34
            TGGGGCTGATTTTTTTGCTGGCTAAAAATGAAAAA                         >  1:6705855/1‑35
             GGGGCTGATTTTTTTGCTGGCTAAAAATGAAAAAa                        >  1:1317822/1‑34
              GGGCTGATTTTTTTGCTGGCTAAAAATGAAAAcaa                       >  1:7677693/1‑32
                                   AAAAATGAAAAAGCGTCGGAAGGAACCGGAAACGC  <  1:9044338/35‑1
                                   AAAAATGAAAAAGCGTCGGAAGGAACCGGAAACGC  <  1:3987933/35‑1
                                   AAAAATGAAAAAGCGTCGGAAGGAACCGGAAACGC  <  1:16745864/35‑1
                                   AAAAATGAAAAAGCGTCGGAAGGAACCGGAAACGC  >  1:18044455/1‑35
                                                                      
TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1054898‑1054933
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taAAAATGAAAAAGCGTCGGAAGGAACCGGAAACGC  <  REL606/3766502‑3766469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.