New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 580468 =60 (0.580)16 (0.200) 4/38 NT 16.7% coding (852/3144 nt) cusA copper/silver efflux system, membrane component
?REL606 2715365 = 112 (1.380)coding (1506/2631 nt) alaS alanyl‑tRNA synthetase

Only 100 of 269 total aligned reads displayed.

CTTTCAGTTCGCCTTTATCGCCAACCTGACCGCCGGATTCCGCATAGAATGGCGTTTGATCCAGCACGA  >  REL606/2715331‑2715399
                                  |                                  
cTTTCAGTTCGCCTTTATCGCCAACCTGAccgccg                                    >  1:1184912/1‑35 (MQ=255)
 tttCAGTTCGCCTTTATCGCCAACCTGACCGCCgg                                   >  1:363901/1‑35 (MQ=255)
 tttCAGTTCGCCTTTATCGCCAACCTGACCGCCgg                                   >  1:7808458/1‑35 (MQ=255)
  ttCAGTTCGCCTTTATCGCCAACCTTACCGCCGGa                                  >  1:8648018/1‑35 (MQ=255)
  ttCAGTTCGCCTTTATCGCCAACCTGACCGCCGGa                                  >  1:16613518/1‑35 (MQ=255)
  ttCAGTTCGCCTTTATCGCCAACCTGACCGCCGGa                                  >  1:5404817/1‑35 (MQ=255)
   tCAGTTCGCCTTTATCGCCAACCTGACCGCCGGAt                                 >  1:6707047/1‑35 (MQ=255)
    cAGTTCGCCTTTATCGCCAACCTGACCGCCGGAtt                                >  1:6853656/1‑35 (MQ=255)
    cAGTTCGCCTTTATCGCCAACCTGACCGCCGGAtt                                >  1:12552503/1‑35 (MQ=255)
    cAGTTCGCCTTTATCGCCAACCTGACCGCCGGAtt                                >  1:18665472/1‑35 (MQ=255)
    cAGTTCGCCTTTATCGCCAACCTGACCGCCGGAtt                                >  1:2020303/1‑35 (MQ=255)
     ngTTCGCCTTTATCGCCAACCTGACCGCCGGATTc                               >  1:14084108/2‑35 (MQ=255)
     aGTTCGCCTTTATCGCCAACCTGACCGCCGGATTc                               >  1:17149734/1‑35 (MQ=255)
     aGTTCGCCTTTATCGCCAACCTGACCGCCGGATTc                               >  1:12085438/1‑35 (MQ=255)
     aGTTCGCCTTTATCGCCAACCTGACCGCCGGATTc                               >  1:5636451/1‑35 (MQ=255)
      gTTCGCCTTTATCGCCAACCTGACCGCCGGATTcc                              >  1:10282849/1‑35 (MQ=255)
      gTTCGCCTTTATCGCCAACCTGACCGCCGGATTcc                              >  1:8888281/1‑35 (MQ=255)
      gTTCGCCTTTATCGCCAACCTGACCGCCGGATTcc                              >  1:6080632/1‑35 (MQ=255)
       ttCGCCTTTATCGCCAACCTGACCGCCGGATTCCg                             >  1:3243474/1‑35 (MQ=255)
       ttCGCCTTTATCGCCAACCTGACCGCCGGATTCCg                             >  1:14868843/1‑35 (MQ=255)
       ttCGCCTTTATCGCCAACCTGACCGCCGGATTCCg                             >  1:8712511/1‑35 (MQ=255)
        tCGCCTTTATCGCCAACCTGACCGCCGGATTCCGc                            >  1:14706231/1‑35 (MQ=255)
         cGCCTTTATCGCCAACCTGACCGCCGGATTCCGCa                           >  1:15490061/1‑35 (MQ=255)
          tcttttACCGCCACCCTCCCCGCCGGATTCCGCAt                          <  1:2808964/32‑1 (MQ=9)
          gCCTTTATCGCCAACCTGACCGCCGGATTCCGCAt                          >  1:18076828/1‑35 (MQ=255)
          gCCTTTATCGCCAACCTGACCGCCGGATTCCGCAt                          >  1:736561/1‑35 (MQ=255)
          gCCTTTATCGCCAACCTGACCGCAGGATTCCGCAt                          <  1:17634794/35‑1 (MQ=255)
            cTTTATCGCCAACCTGACCGCCGGATTCCGCATAg                        >  1:504310/1‑35 (MQ=255)
            cTTTATCGCCAACCTGACCGCCGGATTCCGCATAg                        >  1:10680764/1‑35 (MQ=255)
             tttATCGCCAACCTGACCGCCGGATTCCGCATAGa                       >  1:19733274/1‑35 (MQ=255)
             tttATCGCCAACCTGACCGCCGGATTCCGCATAGa                       >  1:6316212/1‑35 (MQ=255)
             tttATCGCCAACCTGACCGCCGGATTCCGCATAGa                       >  1:15547959/1‑35 (MQ=255)
              ttATCGCCAACCTGACCGCCGGATTCCGCATAGaa                      >  1:13013623/1‑35 (MQ=255)
               tATCGCCAACCTGACCGCCGGATTCCGCATAGAAt                     >  1:7688260/1‑35 (MQ=255)
               tATCGCCAACCTGACCGCCGGATTCCGCATAGAAt                     >  1:4048017/1‑35 (MQ=255)
                aTCGCCAACCTGACCTCCGGATTCCGCATAGAATg                    >  1:5783409/1‑35 (MQ=255)
                aTCGCCAACCTGACCGCCGGATTCCGCATAGAATg                    >  1:17808867/1‑35 (MQ=255)
                 tCGCCAACCTGACCGCCGGATTCCGCATAGAATgg                   >  1:4749474/1‑35 (MQ=255)
                 tCGCCAACCTGACCGCCGGATTCCGCATAGAATgg                   >  1:8101251/1‑35 (MQ=255)
                 cccccAACCCGCCCGCCGGATTCCGCATAGAATgg                   <  1:12698901/32‑1 (MQ=25)
                  cGCCAACCTGACCGCCTGATTCCGCATAGAATGGc                  >  1:1042712/1‑35 (MQ=255)
                  cGCCAACCTGACCGCCGTATTCCGCATAGAATGGc                  >  1:1897021/1‑35 (MQ=255)
                   gCCAACCTGACCGCCGGATTCCGCATAGAATGGCg                 >  1:15834483/1‑35 (MQ=255)
                   gCCAACCTGACCGCCGGATTCCGCATAGAATGGCg                 >  1:9258313/1‑35 (MQ=255)
                   gCCAACCTGACCGCCGGATTCCGCATAGAATGGCg                 >  1:19144398/1‑35 (MQ=255)
                   gCCAACCTGACCGCCGGATTCCGCATAGAATGGCg                 >  1:4704258/1‑35 (MQ=255)
                   gCCAACCTGACCGCCGGATTCCGCATAGAATGGCg                 >  1:19478272/1‑35 (MQ=255)
                   gCCAACCTGACCGCCGGATTCCGCATAGAATGGCg                 >  1:2472437/1‑35 (MQ=255)
                    ccacccggcccgccGGATTCCGCATAGAATGGCGt                <  1:19216221‑M2/21‑1 (MQ=255)
                    ccAACCTGACCGCCGGATTCCGCATAGAATGGCGt                >  1:13540229/1‑35 (MQ=255)
                     cAACCTGACCGCCGGATTCCGCATAGAATGGCGtt               >  1:3098809/1‑35 (MQ=255)
                     cAACCTGACCGCCGGATTCCGCATAGAATGGCGtt               >  1:19945148/1‑35 (MQ=255)
                      accctgcccgccGGATTCCGCATAGAATGGCGttt              <  1:2946741‑M2/23‑1 (MQ=255)
                       ccctgcccgccGGATTCCGCATAGAATGGCGTTTg             <  1:5933957‑M2/24‑1 (MQ=255)
                       ccccccccgccGGATTCCGCATAGAATGGCGTTTg             <  1:5227141‑M2/24‑1 (MQ=255)
                       aCCTGACCGCCGGATTCCGCATAGAATGGCGTTTg             >  1:16304142/1‑35 (MQ=255)
                        ccTGACCGCCGGATTCCGCATAGAATGGCGTTTGa            >  1:15332433/1‑35 (MQ=255)
                         cggcccgccGGATTCCGCATAGAATGGCGTTTGAt           <  1:17388382‑M2/26‑1 (MQ=255)
                         ccccccgccGGATTCCGCATAGAATGGCGTTTGAt           <  1:1224119‑M2/26‑1 (MQ=255)
                          ggcccgccGGATTCCGCATAGAATGGCGTTTGATc          <  1:11227907‑M2/27‑1 (MQ=255)
                          cgcccgccGGATTCCGCATAGAATGGCGTTTGATc          <  1:6416229‑M2/27‑1 (MQ=255)
                          cccccgccGGATTCCGCATAGAATGGCGTTTGATc          <  1:4647489‑M2/27‑1 (MQ=255)
                           gACCGCCGGATTCCGCATAGAATGGCGTTTGATcc         >  1:11610099/1‑35 (MQ=255)
                           gACCGCCGGATTCCGCATAGAATGGCGTTTGATca         >  1:2905407/1‑34 (MQ=255)
                           ccccgccGGATTCCGCATAGAATGGCGTTTGATcc         <  1:97628‑M2/28‑1 (MQ=255)
                           ccccgccGGATTACGCATAGAATGGCGTTTGATcc         <  1:10819188‑M2/28‑1 (MQ=255)
                            aCCGCCGGATTCCGCATATAATGGCGTTTGATCCa        >  1:15291856/1‑35 (MQ=255)
                            aCCGCCGGATTCCGCATAGAATGGCGTTTGATCCa        >  1:19042242/1‑35 (MQ=255)
                            aCCGCCGGATTCCGCATAGAATGGCGTTTGATCCa        >  1:20124437/1‑35 (MQ=255)
                            aCCGCCGGATTCCGCATAGAATGGCGTTTGATCCa        >  1:9881937/1‑35 (MQ=255)
                             ccgccGGATTCCGCATAGAATGGCGTTTGATCCAg       <  1:12803509‑M2/30‑1 (MQ=255)
                             ccgcaGGATTCCGCATAGAATGGCGTTTGATCCAg       <  1:17316052‑M2/30‑1 (MQ=255)
                              cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc      <  1:12347838‑M2/31‑1 (MQ=255)
                              cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc      >  1:16977419‑M2/5‑35 (MQ=255)
                              cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc      <  1:17465616‑M2/31‑1 (MQ=255)
                              cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc      >  1:15984446‑M2/5‑35 (MQ=255)
                              cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc      <  1:18453468‑M2/31‑1 (MQ=255)
                              cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc      <  1:18646298‑M2/31‑1 (MQ=255)
                              cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc      >  1:19577620‑M2/5‑35 (MQ=255)
                              cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc      <  1:4587456‑M2/31‑1 (MQ=255)
                              cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc      <  1:384322‑M2/31‑1 (MQ=255)
                               gccGGATTCCGCATAGAATGGCGTTTGATCCAGCa     >  1:4879748‑M2/4‑35 (MQ=255)
                               gccGGATTCCGCATAGAATGGCGTTTGATCCAGCa     >  1:2151161‑M2/4‑35 (MQ=255)
                               gccGGATTCCGCATAGAATGGCGTTTGATCCAGCa     <  1:11887410‑M2/32‑1 (MQ=255)
                               gccGGATTCCGCATAGAATGGCGTTTGATCCAGCa     >  1:7995176‑M2/4‑35 (MQ=255)
                               gccGGATTCCGCATAGAATGGCGTTTGATCCAGCa     >  1:8455224‑M2/4‑35 (MQ=255)
                                ccGGATTCCGCATAGAATGGCGTTTGATCCAGCAc    >  1:13181253‑M2/3‑35 (MQ=255)
                                ccGGATTCCGCATAGAATGGCGTTTGATCCAGCAc    >  1:19936325‑M2/3‑35 (MQ=255)
                                ccGGATTCCGCATAGAATGGCGTTTGATCCAGCAc    <  1:19316077‑M2/33‑1 (MQ=255)
                                ccGGATTCCGCATAGAATGGCGTTTGATCCAGCAc    >  1:3812944‑M2/3‑35 (MQ=255)
                                 cGGATTCCGCATAGAATGGCGTTTGATCCAGCACg   <  1:14603145‑M2/34‑1 (MQ=255)
                                 cGGATTCCGCATAGAATGGCGTTTGATCCAGCACg   <  1:15108453‑M2/34‑1 (MQ=255)
                                 cGGATTCCGCATAGAATGGCGTTTGATCCAGCACg   >  1:9328302‑M2/2‑35 (MQ=255)
                                 cGGATTCCGCATAGAATGGCGTTTGATCCAGCACg   <  1:18008610‑M2/34‑1 (MQ=255)
                                 cGGATGCCGCATAGAATGGCGTTTGATCCAGCACg   <  1:8166824‑M2/34‑1 (MQ=255)
                                  ggATTCCGCATAGAATGGCGTTTGATCCAGCACGa  >  1:8324443/1‑35 (MQ=255)
                                  ggATTCCGCATAGAATGGCGTTTGATCCAGCACGa  >  1:13749730/1‑35 (MQ=255)
                                  ggATTCCGCATAGAATGGCGTTTGATCCAGCACGa  >  1:9367875/1‑35 (MQ=255)
                                  ggATTCCGCATAGAATGGCGTTTGATCCAGCACGa  >  1:7424232/1‑35 (MQ=255)
                                  ggATTCCGCATAGAATGGCGTTTGATCCAGCACGa  <  1:3387356/35‑1 (MQ=255)
                                  |                                  
CTTTCAGTTCGCCTTTATCGCCAACCTGACCGCCGGATTCCGCATAGAATGGCGTTTGATCCAGCACGA  >  REL606/2715331‑2715399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.