New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 580467 =60 (0.580)4 (0.050) 3/36 NT 9.1% coding (851/3144 nt) cusA copper/silver efflux system, membrane component
?REL606 2397842 = 35 (0.450)coding (824/2646 nt) yfcTU predicted outer membrane export usher protein

Only 100 of 121 total aligned reads displayed.

AACATTTGATCGTCAGTACTGACACTGCCGCCAACATAGTTAAAACCGTCGAAAATATCGGAATTGAG  >  REL606/2397809‑2397876
                                 |                                  
aaCATTTGATCGTCAGTACTGACACTGCCGCCAAc                                   >  1:3129332/1‑35 (MQ=255)
aaCATTTGATCGTCAGTACTGACACTGCCGCCAAc                                   >  1:7593506/1‑35 (MQ=255)
 aCATTTGATCGTCAGTACTGACACTGCCGCCAACa                                  >  1:7316879/1‑35 (MQ=255)
 aCATTTGATCGTCAGTACTGACACTGCCGCCAACa                                  >  1:17685362/1‑35 (MQ=255)
  cATTTGATCGTCAGTACTGACACTGCCGCCAACAt                                 >  1:2739575/1‑35 (MQ=255)
   aTTTGATCGTCAGTACTGACACTGCCGCCAACATa                                >  1:15266541/1‑35 (MQ=255)
   aTTTGATCGTCAGTACTGACACTGCCGCCAACATa                                >  1:11518432/1‑35 (MQ=255)
    tttGATCGTCAGTACTGACACTGCCGCCAACATAg                               >  1:13830290/1‑35 (MQ=255)
     ttGATCGTCAGTACTGACACTGCCGCCAACATAGt                              >  1:7220229/1‑35 (MQ=255)
      tGATCGTCAGTACTGACACTGCCGCCAACATAGtt                             >  1:10956904/1‑35 (MQ=255)
         tCGTCAGTACTGACACTGCCGCCAACATAGTTaaa                          >  1:14787201/1‑35 (MQ=255)
          cGTCAGTACTGACACTGCCGCCAACATAGTTaaaa                         >  1:12575215/1‑35 (MQ=255)
          cGTCAGTACTGACACTGCCGCCAACATAGTTaaaa                         >  1:12111071/1‑35 (MQ=255)
          cGTCAGTACTGACACTGCCGCCAACATAGTTaaaa                         >  1:5971380/1‑35 (MQ=255)
          cGTCAGTACTGACACTGCCGCCAACATAGTTaaaa                         >  1:5071619/1‑35 (MQ=255)
           gTCAGTACTGACACTGCCGCCAACATAGTTAAAAc                        >  1:20139806/1‑35 (MQ=255)
             cAGTACTGACACTGCCGCCAACATAGTTAAAACCg                      >  1:3062244/1‑35 (MQ=255)
              aGTACTGACACTGCCGCCAACATAGTTAAAACCGt                     >  1:9032277/1‑35 (MQ=255)
               gTACTGACACTGCCGCCAACATAGTTAAAACCGTc                    >  1:16753449/1‑35 (MQ=255)
                tACTGACACTGCCGCCAACATAGTTAAAACCGTCg                   >  1:13999407/1‑35 (MQ=255)
                tACTGACACTGCCGCCAACATAGTTAAAACCGTCg                   >  1:12267053/1‑35 (MQ=255)
                 aCTGACACTGCCGCCAACATAGTTAAAACCGTCGa                  >  1:1445542/1‑35 (MQ=255)
                 aCTGACACTGCCGCCAACATAGTTAAAACCGTCGa                  >  1:15174402/1‑35 (MQ=255)
                 aCTGACACTGCCGCCAACATAGTTAAAACCGTCGa                  >  1:17919023/1‑35 (MQ=255)
                 aCTGACACTGCCGCCAACATAGTTAAAACCGTCGa                  >  1:19776811/1‑35 (MQ=255)
                 aCTGACACTGCCGCCAACATAGTTAAAACCGTCGa                  >  1:12702077/1‑35 (MQ=255)
                  cTGACACTGCCGCCAACATAGTTAAAACCGTCGaa                 >  1:8845006/1‑35 (MQ=255)
                  cTGACACTGCCGCCAACATAGTTAAAACCGTCGaa                 >  1:9021889/1‑35 (MQ=255)
                   tGACACTGCCGCCAACATAGTTAAATCCGTCGaaa                >  1:1455797/1‑35 (MQ=255)
                   tGACACTGCCGCCAACATAGTTAAAACCGTCGaaa                >  1:3693551/1‑35 (MQ=255)
                   tGACACTGCCGCCAACATAGTTAAAACCGTCGaaa                >  1:571577/1‑35 (MQ=255)
                   caccccgcccgccaACATAGTTAAAACCGTCGaaa                <  1:4438622‑M2/21‑1 (MQ=255)
                    gACACTGCCGCCAACATAGTTAAAACCGTCGaaaa               >  1:20366487/1‑35 (MQ=255)
                    gACACTGCCGCCAACATAGTTAAAACCGTCGaaaa               >  1:6827176/1‑35 (MQ=255)
                    gACACTGCCGCCAACATAGTTAAAACCGTCGaaaa               >  1:16297219/1‑35 (MQ=255)
                    gACACTGCCGCCAACATAGTTAAAACCGTCGaaaa               >  1:11735480/1‑35 (MQ=255)
                    gACACTGCCGCCAACATAGTTAAAACCGTCGaaaa               >  1:5330310/1‑35 (MQ=255)
                    accccgcccgccaACATAGTTAAAACCGTCGaaaa               <  1:3422707‑M2/22‑1 (MQ=255)
                    accccccccgccaACATAGTTAAAACCGTCGaaaa               <  1:18321347‑M2/22‑1 (MQ=255)
                     ccccgcccgccaACATAGTTAAAACCGTCGAAAat              <  1:8046866‑M2/23‑1 (MQ=255)
                     acacTGCCGCCAACATAGTTAAAACCGTCGAAAat              >  1:11957535/1‑35 (MQ=255)
                     acacTGCCGCCAACATAGTTAAAACCGTCGAAAat              >  1:2401323/1‑35 (MQ=255)
                     acacTGCCGCCAACATAGTTAAAACCGTCGAAAat              >  1:15513280/1‑35 (MQ=255)
                      ctcTGCCGCCAACATAGTTAAAACCGTCGAAAata             >  1:2901680/3‑35 (MQ=255)
                      cccTGCCGCAAACATAGTTAAAACCGTCGAAAata             <  1:8284210/33‑1 (MQ=38)
                      cacTGCCGCCAACATAGTTAAAACCGTCGAAAata             >  1:13454412/1‑35 (MQ=255)
                      cacTGCCGCCAACATAGTTAAAACCGTCGAAAata             >  1:13667437/1‑35 (MQ=255)
                      cacTGCCGCCAACATAGTTAAAACCGTCGAAAata             >  1:19093148/1‑35 (MQ=255)
                      cacTGCCGCCAACATAGTTAAAACCGCCGAAAata             >  1:20073548/1‑35 (MQ=255)
                       acTGCCGCCAACATAGTTAAAACCGTCGAAAatat            >  1:3254961/1‑35 (MQ=255)
                       acTGCCGCCAACATAGTTAAAACCGTCGAAAatat            >  1:792419/1‑35 (MQ=255)
                       acTGCCGCCAACATAGTTAAAACCGTCGAAAatat            >  1:7995099/1‑35 (MQ=255)
                       acTGCCGCCAACATAGTTAAAACCGTCGAAAatat            >  1:5726702/1‑35 (MQ=255)
                       acTGCCGCCAACATAGTTAAAACCGTCGAAAatat            >  1:14165350/1‑35 (MQ=255)
                       acTGCCGCCAACATAGTTAAAACCGTCGAAAatat            >  1:4533341/1‑35 (MQ=255)
                       acTGCCGCCAACATAGTTAAAACCGTCGAAAatat            >  1:2246476/1‑35 (MQ=255)
                        ccgccgccAACATAGTTAAAACCGTCGAAAATATc           <  1:11286704/33‑1 (MQ=255)
                        ccgccgccAACATAGTTAAAACCGTCGAAAATATc           <  1:11045249/33‑1 (MQ=255)
                        cTGCCGCCAACATAGTTAAAACCGTCGAAAATATc           >  1:8646669/1‑35 (MQ=255)
                        cTGCCGCCAACATAGTTAAAACCGTCGAAAATATc           >  1:1759267/1‑35 (MQ=255)
                        cTGCCGCCAACATAGTTAAAACCGTCGAAAATATc           >  1:6666641/1‑35 (MQ=255)
                        cTGCCGCCAACATAGTTAAAACCGTCGAAAATATc           >  1:18353741/1‑35 (MQ=255)
                         tcccgccaACATAGTTAAAACCGTCGAAAATATCg          <  1:13138839‑M2/27‑1 (MQ=255)
                         tcccgccaACATAGTTAAAACCGTCGAAAATATCg          <  1:9571015‑M2/27‑1 (MQ=255)
                         tGCCGCCAACATAGTTAAAACCGTCGAAAATATCg          >  1:13727290/1‑35 (MQ=255)
                         gcccgccaACATAGTTAAAACCGTCGAAAATATCg          <  1:18022228‑M2/27‑1 (MQ=255)
                         ccccgccaACATAGTTAAAACCGTCGAAAATATCg          <  1:8565160‑M2/27‑1 (MQ=255)
                          gccgccAACATAGTTAAAACCGTCGAAAATATCgg         >  1:12566185/1‑35 (MQ=255)
                          gccgccAACATAGTTAAAACCGTCGAAAATATCgg         >  1:13176183/1‑35 (MQ=255)
                          gccgccAACATAGTTAAAACCGTCGAAAATATCgg         >  1:19090723/1‑35 (MQ=255)
                          gccgccAACATAGTTAAAACCGTCGAAAATATCgg         >  1:7994168/1‑35 (MQ=255)
                          gccgccAACATAGTTAAAACCGTCGAAAATATCgg         >  1:17441965/1‑35 (MQ=255)
                          gcccccAACATAGTTAAAACCGTCGAAAATATCgg         <  1:14395031/35‑1 (MQ=255)
                          cccgccaACATAGTTAAAACCGTCGAAAATATCgg         <  1:19379034‑M2/28‑1 (MQ=255)
                          cccgccaACATAGTTAAAACCGTCGAAAATATCgg         <  1:5060415‑M2/28‑1 (MQ=255)
                           ccgccaACATAGTTAAAACCGTCGAAAATATCGGa        <  1:16677934‑M2/29‑1 (MQ=255)
                           ccgccaACATAGTTAAAACCGTCGAAAATATCGGa        <  1:8319998‑M2/29‑1 (MQ=255)
                           cagccaACATAGTTAAAACCGTCGAAAATATCGGa        <  1:19218733‑M2/29‑1 (MQ=255)
                            cgccaACATAGTTAAACCCGTCGAAAATATCGGaa       <  1:7302064‑M2/30‑1 (MQ=255)
                            cgccaACATAGTTAAAACCGTCGAAAATATCGGaa       <  1:16510675‑M2/30‑1 (MQ=255)
                            cgccaACATAGTTAAAACCGTCGAAAATATCGGaa       <  1:19232256‑M2/30‑1 (MQ=255)
                            cgccaACATAGTTAAAACCGTCGAAAATATCGGaa       >  1:1807149‑M2/6‑35 (MQ=255)
                            cgcaaACATAGTTAAAACCGTCGAAAATATCGGaa       <  1:15435461‑M2/30‑1 (MQ=255)
                            ccccaACATAGTTAAAACCGTCGAAAATATCGGaa       <  1:16420977‑M2/30‑1 (MQ=255)
                            ccccaACATAGTTAAAACCGTCGAAAATATCGGaa       <  1:1763156‑M2/30‑1 (MQ=255)
                             gccaACATAGTTAAAACCGTCGAAAATATCGGAAt      <  1:11588542‑M2/31‑1 (MQ=255)
                             gccaACATAGTTAAAACCGTCGAAAATATCGGAAt      <  1:2083010‑M2/31‑1 (MQ=255)
                              ccaACATAGTTAAAACCGTCGAAAATATCGGAAtt     >  1:10044970‑M2/4‑35 (MQ=255)
                              ccaACATAGTTAAAACCGTCGAAAATATCGGAAtt     <  1:13104962‑M2/32‑1 (MQ=255)
                              ccaACATAGTTAAAACCGTCGAAAATATCGGAAtt     <  1:5159219‑M2/32‑1 (MQ=255)
                              ccaACATAGTTAAAACCGTCGAAAATATCGGAAtt     <  1:5341684‑M2/32‑1 (MQ=255)
                              ccaACATAGTTAAAACCGTCGAAAATATAGGAAtt     <  1:19949128‑M2/32‑1 (MQ=255)
                               caACATAGTTAAAACCGTCGAAAATATCGGAATTg    >  1:8158755‑M2/3‑35 (MQ=255)
                               caACATAGTTAAAACCGTCGAAAATATCGGAATTg    <  1:10952186‑M2/33‑1 (MQ=255)
                                aACATAGTTAAAACCGTCGAAAATATCGGAATTGa   <  1:3908812‑M2/34‑1 (MQ=255)
                                aACATAGTTAAAACCGTCGAAAATATCGGAATTGa   <  1:4434164‑M2/34‑1 (MQ=255)
                                aACATAGTTAAAACCGTCGAAAATATCGGAATTGa   >  1:10649585‑M2/2‑35 (MQ=255)
                                 aCATAGTTAAAACCGTCGAAAATATCGGAATTGAg  >  1:6946309/1‑35 (MQ=255)
                                 aCATAGTTAAAACCGTCGAAAATATCGGAATTGAg  >  1:15154241/1‑35 (MQ=255)
                                 aCATAGTTAAAACCGTCGAAAATATCGGAATTGAg  >  1:1394509/1‑35 (MQ=255)
                                 |                                  
AACATTTGATCGTCAGTACTGACACTGCCGCCAACATAGTTAAAACCGTCGAAAATATCGGAATTGAG  >  REL606/2397809‑2397876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.