New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2327674 =62 (0.600)14 (0.160) 5/42 NT 15.8% coding (383/462 nt) elaA predicted acyltransferase with acyl‑CoA N‑acyltransferase domain
?REL606 = 4527187 95 (1.060)coding (1178/2637 nt) fimD outer membrane usher protein, type 1 fimbrial synthesis

Only 100 of 147 total aligned reads displayed.

ATCTTCTTCATAGACCTCCGTCACAGGGATAAAACCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCTG  >  REL606/2327640‑2327708
                                  |                                  
aataccgtagtggaaatgcgcagcaggaaaaaccc                                    <  1:13751292‑M1/1‑1 (MQ=255)
aataccgtagtggaaatgcgcagcaggaaaaaccc                                    >  1:5850350‑M1/35‑35 (MQ=255)
aTCTTCTTCATAGACCTCCGTCACAGGGATAAAAc                                    >  1:10321175/1‑35 (MQ=255)
aTCTTCTTCATAGACCTCCGTCACAGGGATAAAAc                                    <  1:4316248/35‑1 (MQ=255)
aTCTTCTTCATAGACCTCCGTCACAGGGATAAAAc                                    >  1:6387239/1‑35 (MQ=255)
 tcttctTCATAGACCTCCGTCACAGGGATAAAAcc                                   <  1:4456206/35‑1 (MQ=255)
 tcttctTCATAGACCTCCGTCACAGGGATAAAAcc                                   <  1:16235570/35‑1 (MQ=255)
 tcttctTCATAGACCTCCGTCACAGGGATAAAAcc                                   >  1:11784129/1‑35 (MQ=255)
 ataccgtagtggaaatgcgcagcaggaaaaacccc                                   >  1:16917039‑M1/34‑35 (MQ=255)
 ataccgtagtggaaatgcgcagcaggaaaaacccc                                   <  1:18878891‑M1/2‑1 (MQ=255)
 ataccgtagtggaaatgcgcagcaggaaaaacccc                                   >  1:18516651‑M1/34‑35 (MQ=255)
 ataccgtagtggaaatgcgcagcaggaaaaacccc                                   >  1:11914876‑M1/34‑35 (MQ=255)
 ataccgtagtggaaatgcgcagcaggaaaaacccc                                   <  1:12188887‑M1/2‑1 (MQ=255)
  taccgtagtggaaatgcgcagcaggaaaaaccCCg                                  >  1:1553653‑M1/33‑35 (MQ=255)
  taccgtagtggaaatgcgcagcaggaaaaaccCCg                                  >  1:2371257‑M1/33‑35 (MQ=255)
  taccgtagtggaaatgcgcagcaggaaaaaccCCg                                  >  1:2722963‑M1/33‑35 (MQ=255)
  cttcttCATAGACCTCCGTCACAGGGATAAAACCg                                  >  1:13043368/1‑35 (MQ=255)
  cttcttCATAGACCTCCGTCACAGGGATAAAACCg                                  <  1:8245933/35‑1 (MQ=255)
  cttcttCATAGACCTCCGTCACAGGGATAAAACCg                                  >  1:3263006/1‑35 (MQ=255)
    tcttcATAGCCCTCCGTCACAGGGATAAAACCGaa                                <  1:12698691/35‑1 (MQ=255)
    tcttcATAGACCTCCGTCACAGGGATAAAACCGaa                                <  1:17879747/35‑1 (MQ=255)
    tcttcATAGACCTCCGTCACAGGGATAAAACCGaa                                <  1:11655918/35‑1 (MQ=255)
    tcttcATAGACCTCCGTCACAGGGATAAAACCGaa                                >  1:8734650/1‑35 (MQ=255)
    tcttcATAGACCTCCGTCACAGGGATAAAACCGaa                                <  1:10699603/35‑1 (MQ=255)
     cttcATAGACCTCCGTCACAGGGATAAAACCGaac                               >  1:2076535/1‑34 (MQ=255)
       tcATAGACCTCCGTCACAGGGATAAAACCGAAAct                             >  1:20455465/1‑35 (MQ=255)
       tcATAGACCTCCGTCACAGGGATAAAACCGAAAct                             >  1:18454812/1‑35 (MQ=255)
       tcATAGACCTCCGTCACAGGGATAAAACCGAAAct                             >  1:12263397/1‑35 (MQ=255)
       tcATAGACCTCCGTCACAGGGATAAAACCGAAAct                             >  1:2626174/1‑35 (MQ=255)
       tcATAGACCTCCGTCACAGGGATAAAACCGAAAct                             >  1:16529146/1‑35 (MQ=255)
        cATAGACCTCCGTCACAGGGATAAAACCGAAActc                            >  1:7983415/1‑35 (MQ=255)
        cATAGACCTCCGTCACAGGGATAAAACCGAAActc                            >  1:8188196/1‑35 (MQ=255)
         aTAGACCTCCGTCACAGGGATAAAACCGAAActct                           >  1:1419370/1‑35 (MQ=255)
         aTAGACCTCCGTCACAGGGATAAAACCGAAActct                           >  1:5011654/1‑35 (MQ=255)
         aTAGACCTCCGTCACAGGGATAAAACCGAAActct                           >  1:2401265/1‑35 (MQ=255)
           aGACCTCCGTCACAGGGATAAAACCGAAACTCTgg                         >  1:4450745/1‑35 (MQ=255)
           aGACCTCCGTCACAGGGATAAAACCGAAACTCTgg                         >  1:14997654/1‑35 (MQ=255)
            gACCTCCGTCACAGGGATAAAACCGAAACTCTGGt                        >  1:16514233/1‑35 (MQ=255)
            gACCTCCGTCACAGGGATAAAACCGAAACTCTGGt                        >  1:1576199/1‑35 (MQ=255)
             aCCTCCGTCACAGGGATAAAACCGAAACTCTGGTa                       >  1:10561717/1‑35 (MQ=255)
              ccTCCGTCACAGGGATAAAACCGAAACTCTGGTAg                      >  1:6098410/1‑35 (MQ=255)
              ccTCCGTCACAGGGATAAAACCGAAACTCTGGTAg                      >  1:19667293/1‑35 (MQ=255)
               ccccGCCAAAGGAAAAAACCCGAAACTCTGGTAGa                     <  1:5500654/33‑1 (MQ=9)
               cTCCGTCACAGGTATAAAACCGAAACTCTGGTAGa                     >  1:15743131/1‑35 (MQ=255)
                 ccGTCACAGGGATAAAACCGAAACTCTGGTAGAAg                   >  1:6640579/1‑35 (MQ=255)
                  cGTCACAGGGATAAAACCGAAACTCTGGTAGAAGt                  >  1:9310375/1‑35 (MQ=255)
                  cGTCACAGGGATAAAACCGAAACTCTGGTAGAAGt                  >  1:1360435/1‑35 (MQ=255)
                  cGTCACAGGAAAAACCCCGAAACTCTGGTAGAAGt                  <  1:17155164/35‑1 (MQ=16)
                   gTCACAGGGATAAAACCGAAACTCTGGTAGAAGtt                 >  1:6333880/1‑35 (MQ=255)
                    tCACAGGGATAAAACCGAAACTCTGGTAGAAGttt                >  1:3835949/1‑35 (MQ=255)
                     cacaGGGATAAAACCGAAACTCTGGTAGAAGtttt               >  1:2146782/1‑35 (MQ=255)
                     caaaGGGAAAAACCCGAAACTCTGGTAGAAGtttt               <  1:4744572/32‑1 (MQ=25)
                     aagaggaaaaaccCCGAAACTCTGGTAGAAGtttt               >  1:701299‑M1/14‑35 (MQ=255)
                      acaGGGATAAAACCGAAACTCTGGTAGAAGTTTTg              >  1:9856061/1‑35 (MQ=255)
                      acaGGGATAAAACCGAAACTCTGGTAGAAGTTTTg              >  1:1335135/1‑35 (MQ=255)
                      aaaggaaaaaccCCGAAACTCTGGTAGAAGTTTTg              >  1:7767723‑M1/13‑35 (MQ=255)
                       caggaaaaaacCCGAAACTCTGGTAGAAGTTTTGc             >  1:8179828‑M1/12‑35 (MQ=255)
                       cagaaaaaaccCCGAAACTCTGGTAGAAGTTTTGc             >  1:15619384‑M1/12‑35 (MQ=255)
                       caGGGATAAAACCGAAACTCTGGTAGAAGTTTTGc             >  1:1320732/1‑35 (MQ=255)
                       caGGGATAAAACCGAAACTCTGGTAGAAGTTTTGc             >  1:11030223/1‑35 (MQ=255)
                       caGGGATAAAACCGAAACTCTGGTAGAAGTTTTGc             >  1:1612772/1‑35 (MQ=255)
                       caGGGAAAAACCCGAAACTCTGGTAGAAGTTTTGc             <  1:20190550/35‑1 (MQ=37)
                        aggaaaaaccCCGAAACTCTGGTAGAAGTTTTGCa            >  1:3853235‑M1/11‑35 (MQ=255)
                        aGGGATAAAACCGAAACTCTGGTAGAAGTTTTGCa            >  1:10392613/1‑35 (MQ=255)
                        aGGGATAAAACCGAAACTCTGGTAGAAGTTTTGCa            >  1:5200122/1‑35 (MQ=255)
                        aGGGATAAAACCGAAACTCTGGTAGAAGTTTTGCa            >  1:18829788/1‑35 (MQ=255)
                         gggATAAAACCGAAACTCTGGTAGAAGTTTTGCAg           >  1:10809877/1‑35 (MQ=255)
                          ggATAAAACCGAAACTCTGGTAGAAGTTTTGCAGa          >  1:4590059/1‑35 (MQ=255)
                          gaaaaaccCCGAAACTCTGGTAGAAGTTTTGCAGa          >  1:9573883‑M1/9‑35 (MQ=255)
                          gaaaaaccCCGAAACTCTGGTAGAAGTTTTGCAGa          >  1:12030833‑M1/9‑35 (MQ=255)
                           gATAAAACCGAAACTCTGGTAGAAGTTTTGCAGAt         >  1:15904146/1‑35 (MQ=255)
                           gATAAAACCGAAACTCTGGTAGAAGTTTTGCAGAt         >  1:19948244/1‑35 (MQ=255)
                           caaaaccCCGAAACTCTGGTAGAAGTTTTGCAGAt         >  1:796299‑M1/8‑35 (MQ=255)
                           aaaaaccCCGAAACTCTGGTAGAAGTTTTGCAGAt         >  1:736841‑M1/8‑35 (MQ=255)
                           aaaaaacCCGAAACTCTGGTAGAAGTTTTGCAGAt         >  1:1296029‑M1/8‑35 (MQ=255)
                            aaaaccCCGAAACTCTGGTAGAAGTTTTGCAGATg        >  1:3597997‑M1/7‑35 (MQ=255)
                            aTAAACCAGAAACTCTGGTAGAAGTTTTGCAGAtg        <  1:3086201/35‑1 (MQ=37)
                            aTAAAACCGAAACTCTGGTAGAAGTTTTGCAGAtg        >  1:20353373/1‑35 (MQ=255)
                             taaccCCGAAACTCTGGTAGAAGTTTTGCAGATgc       >  1:9272248‑M1/6‑35 (MQ=255)
                             tAAAACCGAAACTCTTGTAGAAGTTTTGCAGAtgc       >  1:1093332/1‑35 (MQ=255)
                             aacccCCGAAACTCTGGTAGAAGTTTTGCAGATgc       >  1:8733668‑M1/6‑35 (MQ=255)
                             aaaccCCGAAACTCTGGTAGAAGTTTTGCAGATgc       >  1:8373654‑M1/6‑35 (MQ=255)
                             aaaccCCGAAACTCTGGTAGAAGTTTTGCAGATgc       >  1:17593421‑M1/6‑35 (MQ=255)
                             aaaccCCGAAACTCTGGTAGAAGTTTTGCAGATgc       >  1:20023753‑M1/6‑35 (MQ=255)
                              aaccCCGAAACTCTGGTAGAAGTTTTGCAGATgcg      >  1:5190630‑M1/5‑35 (MQ=255)
                              aaccCCGAAACTCTGGTAGAAGTTTTGCAGATgcg      >  1:8451656‑M1/5‑35 (MQ=255)
                              aaacCCGAAACTCTGGTAGAAGTTTTGCAGATgcg      >  1:20225992‑M1/5‑35 (MQ=255)
                              aaaaCCGAAACTCTGGTAGAAGTTTTGCAGAtgcg      >  1:9574340/1‑35 (MQ=255)
                              aaaaCCGAAACTCTGGTAGAAGTTTTGCAGAtgcg      >  1:9774487/1‑35 (MQ=255)
                               accCCGAAACTCTGGTAGAAGTTTTGCAGATgcgc     >  1:4950344‑M1/4‑35 (MQ=255)
                                ccCCGAAACTCTGGTAGAAGTTTTGCAGATGCGcc    >  1:15694487‑M1/3‑35 (MQ=255)
                                ccCCGAAACTCTGGTAGAAGTTTTGCAGATGCGcc    >  1:1549973‑M1/3‑35 (MQ=255)
                                aaCCGAAACTCTGGTAGAAGTTTTGCAGAtgcgcc    >  1:1573689/1‑35 (MQ=255)
                                 cCCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCt   >  1:16183465‑M1/2‑35 (MQ=255)
                                 cCCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCt   >  1:17330428‑M1/2‑35 (MQ=255)
                                 cCCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCt   >  1:18323356‑M1/2‑35 (MQ=255)
                                 cCCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCt   >  1:3767543‑M1/2‑35 (MQ=255)
                                 aCCGAAACTCTGGTAGAAGTTTTGCAGAtgcgcct   >  1:10972352/1‑35 (MQ=255)
                                  CCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCTg  <  1:8290337‑M1/35‑1 (MQ=255)
                                  CCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCTg  >  1:10182689‑M1/1‑35 (MQ=255)
                                  |                                  
ATCTTCTTCATAGACCTCCGTCACAGGGATAAAACCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCTG  >  REL606/2327640‑2327708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.