New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3741965NA (NA)80 (0.780) 37/48 NT 93.0% noncoding (1/768 nt) IS1 repeat region
?REL606 3742143 = 6 (0.060)pseudogene (223/405 nt) waaT UDP‑galactose:(Glucosyl) LPS alpha1,2‑galactosyltransferase WaaT

Only 100 of 112 total aligned reads displayed.

CATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3741933‑3741965
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCTGAAGTATGTCGCGTACGACCAAAACTGTG  >  REL606/3742143‑3742175
                                                                  
CATACACTAACTCAGTAAGTTGGCAGCATCACCCC                                 >  1:12628856/1‑35
CATACACTAAATCAGTAAGTTGGCAGCATCACCCC                                 <  1:12660416/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCC                                 <  1:8255701/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCC                                 >  1:7955335/1‑35
CATACACTAAATCAGTAAGTTGGCAGCATCACCCC                                 <  1:11592000/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCC                                 <  1:19627159/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCC                                 <  1:2969322/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCC                                 >  1:2990411/1‑35
CATACACTAAATCAGTAAGTTGGCAGCATCACCCC                                 >  1:11082773/1‑35
CATACACTAAATCAGTAAGTTGGCAGCATCACCCC                                 <  1:1059753/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCC                                 >  1:9562651/1‑35
 ATACACTAAATCAGTAAGTTGGCAGCATCACCCCC                                >  1:5408242/1‑35
 ATACACTAAATCAGTAAGTTGGCAGCATCACCCCC                                >  1:12497626/1‑35
  TACACTAAATCAGTAAGTTGGCAGCATCACCCCCT                               <  1:19138096/35‑1
  TACACTAAATCAGTAAGTTGGCAGCATCACCCCCT                               <  1:1763276/35‑1
  TACACTAAATCAGTAAGTTGGCAGCATCACCCCCT                               <  1:13929920/35‑1
  TACACTAAATCAGTAAGTTGGCAGCATCACCCCCT                               >  1:398021/1‑35
   ACACTAAATCAGTAAGTTGGCAGCATCACCCCCTG                              <  1:15506513/35‑1
    CACTAAATCAGTAAGTTGGCAGCATCACCCCCTGA                             >  1:6391404/1‑35
    CACTAAATCAGTAAGTTGGCAGCATCACCCCCTGA                             <  1:11789356/35‑1
     ACTAAATCAGTAAGTTGGCAGCATCACCCCCTGAA                            >  1:19417802/1‑35
      CTAAATCAGTAAGTTGGCAGCATCACCCCCTGAAG                           >  1:12152402/1‑35
      CTAAATCAGTAAGTTGGCAGCATCACCCCCTGAAG                           >  1:16270203/1‑35
      CTAAATCAGTAAGTTGGCAGCATCACCCCCTGAAG                           <  1:5129980/35‑1
      CTAAATCAGTAAGTTGGCAGCATCACCCCCTGAAG                           <  1:11752739/35‑1
       TAAATCAGTAAGTTGGCAGCATCACCCCCTGAAGT                          <  1:662233/35‑1
       TAAATCAGTAAGTTGGCAGCATCACCCCCTGAAGT                          <  1:5960916/35‑1
       TAAATCAGTAAGTTGGCAGCATCACCCCCTGAAGT                          <  1:13801616/35‑1
        AAATCAGTAAGTTGGCAGCATCACCCCCTGAAGTA                         >  1:5591522/1‑35
        AAATCAGTAAGTTGGCAGCATCACCCCCTGAAGTA                         <  1:18280996/35‑1
        AAATCAGTAAGTTGGCAGCATCACCCCCTGAAGTA                         <  1:6779919/35‑1
        AAATCAGTAAGTTGGCAGCATCACCCACTGAAGTA                         <  1:458091/35‑1
         AATCAGTAAGTTGGCAGCATCACCCCCTGAAGTAT                        <  1:7970153/35‑1
          ATCAGTAATTTGGCAGCATCACCCCCTGAAGTATG                       >  1:18061234/1‑35
          ATCAGTAAGTTGGCAGCATCACCCCCTGAAGTATG                       <  1:13960978/35‑1
           TCAGTAAGTTGGCAGCATCACCCCCTGAAGTATGT                      <  1:2267144/35‑1
           TCAGTAAGTTGGCAGCATCACCCCCTGAAGTATGT                      <  1:17949264/35‑1
           TCAGTAAGTTGGCAGCATCACCCCCTGAAGTATGT                      >  1:9189551/1‑35
           TCAGTAAGTTGGCAGCATCACCCCCTGAAGTATGT                      >  1:8321590/1‑35
           TCAGTAAGTTGGCAGCATCACCCCCTGAAGTATGT                      <  1:1320037/35‑1
           TCAGTAAGTTGGCAGCATCACCCCCTGAAGTATGT                      <  1:14997950/35‑1
            CAGTAAGTTGGCAGCATCACCCCCTGAAGTATGTC                     <  1:1744757/35‑1
            CAGTAAGTTGGCAGCATCACCCCCTGAAGTATGTC                     <  1:19443575/35‑1
            CAGTAAGTTGGCAGCATCACCCCCTGAAGTATGTC                     >  1:5721100/1‑35
             AGTAAGTTGGCAGCATCACCCCCTGAAGTATGTCG                    <  1:4348075/35‑1
             AGTAAGTTGGCAGCATCACCCCCTGAAGTATGTCG                    <  1:534429/35‑1
             AGTAAGTTGGCAGCATCACCCCCTGAAGTATGTCG                    <  1:19340174/35‑1
             AGTAAGTTGGCAGCATCACCCCCTGAAGTATGTCG                    >  1:66492/1‑35
              GTAAGTTGGCAGCATCACCCCCTGAAGTATGTCGC                   <  1:9529420/35‑1
              GTAAGTTGGCAGCATAACCCCCTGAAGTATGTCGC                   <  1:1505415/35‑1
               TAAGTTGGCAGCATCACCCCCTGAAGTATGTCGCG                  >  1:10341834/1‑35
               TAAGTTGGCAGCATCACCCCCTGAAGTATGTCGCG                  >  1:3238771/1‑35
               TAAGTTGGCAGCATCACCCCCTGAAGTATGTCGCG                  <  1:15214190/35‑1
               TAAGTTGGCAGCATCACCCCCTGAAGTATGTCGCG                  >  1:16407572/1‑35
                AAGTTGGCAGCATCACCCCCTGAAGTATGTCGCGT                 >  1:14077579/1‑35
                AAGTTGGCAGCATCACCCCCTGAAGTATGTCGCGT                 <  1:1455046/35‑1
                 AGTTGGCAGCATCACCCCCTGAAGTATGTCGCGTA                <  1:13968762/35‑1
                 AGTTGGCAGCATCACCCCCTGAAGTATGTCGCGTA                <  1:11257832/35‑1
                 AGTTGGCAGCATCACCCCCTGAAGTATGTCGCGTA                <  1:18244775/35‑1
                 AGTTGGCAGCATCACCCACTGAAGTATGTCGCGTA                <  1:1132761/35‑1
                 AGTTGGCAGCATAACCCCCTGAAGTATGTCGCGTA                <  1:15526474/35‑1
                   TTGGCAGCATCACCCCCTGAAGTATGTCGCGTACG              <  1:19562882/35‑1
                   TTGGCAGCATCACCCCCTGAAGTATGTCGCGTACG              <  1:7012943/35‑1
                   TTGGCAGCATCACCCCCTGAAGTATGTCGCGTACG              <  1:13917538/35‑1
                    TGGCAGCATCACCCCCTGAAGTATGTCGCGTACGA             <  1:11242285/35‑1
                    TGGCAGCATCACCCCCTGAAGTATGTCGCGTACGA             <  1:16553635/35‑1
                    TGGCAGCATCACCCCCTGAAGTATGTCGCGTACGA             <  1:16880599/35‑1
                    TGGCAGCATCACCCCCTGAAGTATGTCGCGTACGA             <  1:18473630/35‑1
                     GGCAGCATCACCCCCTGAAGTATGTCGCGTACGAC            >  1:10096500/1‑35
                     GGCAGCATCACCCCCTGAAGTATGTCGCGTACGAC            <  1:16298996/35‑1
                     GGCAGCATCACCCCCTGAAGTATGTCGCGTACGAC            <  1:2505789/35‑1
                      GCAGCATCACCCCCTGAAGTATGTCGCGTACGACC           <  1:14248852/35‑1
                      GCAGCATCACCCCCTGAAGTATGTCGCGTACGACC           <  1:2689141/35‑1
                       CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA          <  1:16034741/35‑1
                       CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA          <  1:175677/35‑1
                       CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA          <  1:9313785/35‑1
                       CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA          >  1:19603438/1‑35
                       CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA          <  1:20349887/35‑1
                       CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA          <  1:11099582/35‑1
                       CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA          <  1:301329/35‑1
                       CAGCATCACCCCCTGAAGTATGTCGCGTACGACCA          >  1:3520169/1‑35
                        AGCATCACCCCCTGAAGTATGTCGCGTACGACCAA         >  1:17880708/1‑35
                        AGCATCACCCCCTGAAGTATGTCGCGTACGACCAA         >  1:16979530/1‑35
                        AGCATCACCCCCTGAAGTATGTCGCGTACGACCAA         >  1:13365914/1‑35
                         GCATCACCCCCTGAAGTATGTCGCGTACGACCAAA        >  1:19386668/1‑35
                         GCATCACCCCCTGAAGTATGTCGCGTACGACCAAA        <  1:9466880/35‑1
                         GCATCACCCCCTGAAGTATGTCGCGTACGACCAAA        <  1:11188796/35‑1
                          CATCACCCCCTGAAGTATGTCGCGTACGACCAAAA       >  1:7936232/1‑35
                           ATCACCCCCTGAAGTATGTCGCGTACGACCAAAAC      <  1:8083067/35‑1
                           ATCACCCCCTGAAGTATGTCGCGTACGACCAAAAC      >  1:11550226/1‑35
                            tccCCCCCTGAAGTATGTCGCGTACGACCAAAACT     <  1:6045040/32‑1
                            TCACCCCCTGAAGTATGTCGCGTACGACCAAAACT     >  1:14358024/1‑35
                            TCACCCCCTGAAGTATGTCGCGTACGACAAAAACT     <  1:9787898/35‑1
                             tACCCCCTGAAGTATGTCGCGTACGACCAAAACTG    <  1:5173083/34‑1
                             CACCCCCTGAAGTATGTCGCGTACGACCAAAACTG    <  1:8397776/35‑1
                             CACCCCCTGAAGTATGTCGCGTACGACCAAAACTG    <  1:18198865/35‑1
                              ACCCCCTGAAGTATGTCGCGTACGACCAAAACTGT   >  1:8031034/1‑35
                               CCCCCTGAAGTATGTCGCGTACGACCAAAACTGTG  <  1:8415954/35‑1
                               CCCCCTGAAGTATGTCGCGTACGACCAAAACTGTG  <  1:4855282/35‑1
                               CCCCCTGAAGTATGTCGCGTACGAACAAAACTGTG  <  1:898270/35‑1
                                                                  
CATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3741933‑3741965
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCTGAAGTATGTCGCGTACGACCAAAACTGTG  >  REL606/3742143‑3742175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.