New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2840701 =74 (0.720)27 (0.270) 8/46 NT 24.4% coding (1097/1098 nt) mltA membrane‑bound lytic murein transglycosylase A
?REL606 3891539 = 96 (0.970)intergenic (‑85/‑138) yieN/kup fused predicted transcriptional regulator: sigma54 activator protein/conserved protein/potassium transporter

Only 100 of 179 total aligned reads displayed.

ACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGC  >  REL606/3891505‑3891573
                                  |                                  
aCGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAgg                                    >  1:3287286/1‑35 (MQ=255)
 cGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAggg                                   >  1:2172494/1‑35 (MQ=255)
  gccccgggcgcaggtaacgtctttagcggctgggg                                  >  1:15871758‑M2/33‑35 (MQ=255)
  gccccgggcgcaggtaacgtctttagcggctgggg                                  >  1:6073460‑M2/33‑35 (MQ=255)
  gccccgggcgcaggtaacgtctttagcggctgggg                                  >  1:16426131‑M2/33‑35 (MQ=255)
  gTTTCTTGCTGGTGGCTAAAATAGTCTCAAAgggg                                  >  1:6668508/1‑35 (MQ=255)
   tttCTTGCTGGTGGCTAAAATAGTCTCAAAggggg                                 <  1:623818/35‑1 (MQ=255)
   tttCTTGCTGGTGGCTAAAATAGTCTCAAAggggg                                 <  1:2048058/35‑1 (MQ=255)
    ttCTTGCTGGTGGCTAAAATAGTCTCAAAgggggg                                >  1:16194760/1‑35 (MQ=255)
    ttCTTGCTGGTGGCTAAAATAGTCTCAAAgggggg                                <  1:14595369/35‑1 (MQ=255)
     tCTTGCTGGTGGCTAAAATAGTCTCAAAggggggg                               <  1:16038214/35‑1 (MQ=255)
     tCTTGCTGGTGGCTAAAATAGTCTCAAAggggggg                               >  1:15589538/1‑35 (MQ=255)
     ccgggcgcaggtaacgtctttagcggctggggggg                               >  1:20374650‑M2/30‑35 (MQ=255)
      cTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGt                              >  1:14371466/1‑35 (MQ=255)
        tGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGTAt                            <  1:9553072/35‑1 (MQ=255)
        ggcgcaggtaacgtctttagcggctgggggggcaa                            >  1:13089583‑M2/27‑32 (MQ=255)
        ggcgcaggtaacgtctttagcggctgGTGGGGTAt                            >  1:6679040‑M2/27‑35 (MQ=255)
         gcgcaggtaacgtctttagcggctgGGGGGGTAtt                           >  1:7687687‑M2/26‑35 (MQ=255)
          cgcaggtaacgtctttagcggctgGGGGGGTGttt                          >  1:3875650‑M2/25‑35 (MQ=255)
          cgcaggtaacgtctttagcggctgGGGGGGTAttt                          >  1:5918085‑M2/25‑35 (MQ=255)
          cgcaggtaacgtctttagcggctgGGGGGGTAttt                          >  1:10272572‑M2/25‑35 (MQ=255)
          cTGGTGGCTAAAATAGTCTCAAAGGGGGGGTAttt                          >  1:7220458/1‑35 (MQ=255)
          cTGGTGGCTAAAATAGTCTCAAAGGGGGGGTAttt                          <  1:13422938/35‑1 (MQ=255)
           tggtggCTAAAATAGTCTCAAAGGGGGGGTAtttt                         >  1:16892818/1‑35 (MQ=255)
           tggtggCTAAAATAGTCTCAAAGGGGGGGTAtttt                         >  1:3615280/1‑35 (MQ=255)
           tggtggCTAAAATAGTCTCAAAGGGGGGGTAtttt                         <  1:7208879/35‑1 (MQ=255)
           gcaggtaacgtctttagcggctgGGGTGGTAtttt                         >  1:8748661‑M2/24‑35 (MQ=255)
           gcaggtaacgtctttagcggctgGGGGGGTttttc                         >  1:17847163‑M2/24‑34 (MQ=255)
           gcaggtaacgtctttagcggctgGGGGGGTAtttt                         >  1:10167706‑M2/24‑35 (MQ=255)
            ggtggCTAAAATAGTCTCAAAGGGGGGGTAttttt                        <  1:20078185/35‑1 (MQ=255)
            ggtggCTAAAATAGTCTCAAAGGGGGGGTAttttt                        <  1:17118494/35‑1 (MQ=255)
            ggtggCTAAAATAGTCTCAAAGGGGGGGTAttttt                        <  1:11722019/35‑1 (MQ=255)
            caggtaacgtctttagcggctgGGGGGGTAttttt                        >  1:12473859‑M2/23‑35 (MQ=255)
             gtggCTAAAATAGTCTCAAAGGGGGGTTATTTTTc                       >  1:12199533/1‑35 (MQ=255)
             gtggCTAAAATAGTCTCAAAGGGGGGTTATTTTTc                       >  1:3360829/1‑35 (MQ=255)
             gtggCTAAAATAGTCTCAAAGGGGGGGTATTTTTc                       <  1:1980148/35‑1 (MQ=255)
             gtggCTAAAATAGTCTCAAAGGGGGGGTATTTTTc                       <  1:18992859/35‑1 (MQ=255)
             gtggCTAAAATAGTCTCAAAGGGGGGGGATTTTTc                       >  1:9736956/1‑35 (MQ=255)
              tggCTAAAATAGTCTCAAAGGGGGGGTATTTTTCt                      <  1:17431063/35‑1 (MQ=255)
              tggCTAAAATAGTCTCAAAGGGGGGGTATTTTTCt                      >  1:18081877/1‑35 (MQ=255)
              tggCTAAAATAGTCTCAAAGGGGGGGTATTTTTCt                      >  1:10846160/1‑35 (MQ=255)
              ggtaacgtctttagcggctgGGGGGGtattttttt                      >  1:15846926‑M2/21‑33 (MQ=255)
              ggtaacgtctttagcggctgGGGGGGtattttttt                      >  1:932120‑M2/21‑33 (MQ=255)
               ggCTAAAATAGTCTCAAAGGGGGGGTATTTTTCtt                     >  1:12972883/1‑35 (MQ=255)
               ggCTAAAATAGTCTCAAAGGGGGGGTATTTTTCtt                     >  1:2643385/1‑35 (MQ=255)
               ggCTAAAATAGTCTCAAAGGGGGGGTATTTTTCtt                     <  1:18476711/35‑1 (MQ=255)
               ggCTAAAATAGTCTCAAAGGGGGGGTATTTTTCtt                     <  1:15224230/35‑1 (MQ=255)
               ggCTAAAATAGTCTCAAAGGGGGGGTATTTTTCtt                     >  1:4524710/1‑35 (MQ=255)
                taacgtctttagcggctgGGGGGGTATTTTTTttt                    >  1:8422934‑M2/19‑35 (MQ=255)
                gCTAAAATAGTCTCAAAGGGGGGGTATTTTTCttt                    >  1:19631854/1‑35 (MQ=255)
                gCTAAAATAGTCTCAAAGGGGGGGTATTTTTCttt                    <  1:13706545/35‑1 (MQ=255)
                 cTAAAATAGTCTCAAAGGGGGGGTATTTTTCTTTg                   <  1:38553/35‑1 (MQ=255)
                 cTAAAATAGTCTCAAAGGGGGGGTATTTTTCTTTg                   <  1:1104366/35‑1 (MQ=255)
                 cTAAAATAGTCTCAAAGGGGGGGTATTTTTATTTg                   <  1:7851790/35‑1 (MQ=255)
                  tAAAATAGTCTCAAAGGGGGGGTATTTTTCTTTGa                  >  1:20003135/1‑35 (MQ=255)
                  tAAAATAGTCTCAAAGGGGGGGTATTTTTCTTTGa                  >  1:3170712/1‑35 (MQ=255)
                  tAAAATAGTCTCAAAGGGGGGGTATTTTTCTTTGa                  <  1:20552509/35‑1 (MQ=255)
                   aaaaTAGTCTCAAAGGGGGGGTATTTTTCTTTGAg                 <  1:18351811/35‑1 (MQ=255)
                   aaaaTAGTCTCAAAGGGGGGGTATTTTTCTTTGAg                 <  1:18571803/35‑1 (MQ=255)
                    aaaTAGTCTCAAAGGGGGGGTATTTTTCTTTGAGc                >  1:7119115/1‑35 (MQ=255)
                    aaaTAGTCTCAAAGGGGGGGTATTTTTCTTTGAGc                <  1:11292194/35‑1 (MQ=255)
                    aaaTAGTCTCAAAGGGGGGGTATTTTTCTTTGAGc                >  1:6140886/1‑35 (MQ=255)
                      aTAGTCTCAAAGGGTGGGTATTTTTCTTTTAGCCa              >  1:7227590/1‑35 (MQ=38)
                      aTAGTCTCAAAGGGGGGGTATTTTTCTTTGAGCCa              >  1:18240102/1‑35 (MQ=255)
                       tAGTCTCAAAGGGGGGGTATTTTTCTTTGAGCCAg             <  1:11657340/35‑1 (MQ=255)
                       tAGTCTCAAAGGGGGGGTATTTTTCTTTGAGCCAg             >  1:12521991/1‑35 (MQ=255)
                       tAGTCTCAAAGGGGGGGTATTTTTCTTTGAGCCAg             <  1:14902416/35‑1 (MQ=255)
                       tAGTCTCAAAGGGGGGGTATTTTTCTTTGAGCCAg             <  1:10436239/35‑1 (MQ=255)
                        aGTCTCAAAGGGGGGGTATTTTTCTTTGAGCCAgg            >  1:8898917/1‑35 (MQ=255)
                        aGTCTCAAAGGGGGGGTATTTTTCTTTGAGCCAgg            >  1:6320372/1‑35 (MQ=255)
                        aGTCTCAAAGGGGGGGTATTTTTCTTTGAGCCAgg            <  1:20133810/35‑1 (MQ=255)
                        aGTCTCAAAGGGGGGGTATTTTTCTTTGAGCCAgg            >  1:14572796/1‑35 (MQ=255)
                        aGTCTCAAAGGGGGGGTATTTTTCTTTGAGCCAgg            >  1:17978350/1‑35 (MQ=255)
                         gTCTCAAAGGGGGGGTATTTTTCTTTGAGCCAGGt           >  1:13592812/1‑35 (MQ=255)
                          tctcAAAGGGGGGGTATTTTTCTTTGAGCCAGGtt          >  1:16716068/1‑35 (MQ=255)
                          tctcAAAGGGGGGGTATTTTTCTTTGAGCCAGGtt          <  1:1903831/35‑1 (MQ=255)
                           ctcAAAGGGGGGGTATTTTTCTTTGAGCCAGGTTa         >  1:9056905/1‑35 (MQ=255)
                           ctcAAAGGGGGGGTATTTTTCTTTGAGCCAGGTTa         <  1:12055552/35‑1 (MQ=255)
                            tcAAAGGGGGGGTATTTTTCTTTGAGCCAGGTTaa        >  1:10053378/1‑35 (MQ=255)
                            tcAAAGGGGGGGTATTTTTCTTTGAGCCAGGTTaa        <  1:4020989/35‑1 (MQ=255)
                             cAAAGGGGGGGTATTTTTCTTTGAGCCAGGTTAAt       <  1:9580806/35‑1 (MQ=255)
                             cAAAGGGGGGGTATTTTTCTTTGAGCCAGGTTAAt       <  1:20234422/35‑1 (MQ=255)
                             cAAAGGGGGGGTATTTTTCTTTGAGCCAGGTTAAt       <  1:10098294/35‑1 (MQ=255)
                             cAAAGGGGGGGTATTTTTCTTTGAGCCAGGTTAAt       <  1:3704702/35‑1 (MQ=255)
                             cAAAGGGGGGGTATTTTTCTTTGAGCCAGGTTAAt       >  1:2490246/1‑35 (MQ=255)
                             cAAAGGGGGGGTATTTTTCTTTGAGCCAGGTTAAt       <  1:8007855/35‑1 (MQ=255)
                              aaaGGGGGGGTATTTTTCTTTGAGCCAGGTTAAtg      >  1:15784735/1‑35 (MQ=255)
                              aaaGGGGGGGTATTTTTCTTTGAGCCAGGTTAAtg      <  1:16491506/35‑1 (MQ=255)
                              aaaGGGGGGGTATTTTTCTTTGAGCCAGGTTAAtg      >  1:18830421/1‑35 (MQ=255)
                              aaaGGGGGGGTATTTTTCTTTGAGCCAGGTTAAtg      >  1:6783471/1‑35 (MQ=255)
                              aaaGGGGGGGTATTTTTCTTTGAGCAAGGTTAAtg      <  1:19445044/35‑1 (MQ=255)
                               aaGGGGGGGTATTTTTCTTTGAGCCAGGTTAAtgt     >  1:16689649/1‑35 (MQ=255)
                               aaGGGGGGGTATTTTTCTTTGAGCCAGGTTAAtgt     <  1:2062707/35‑1 (MQ=255)
                               aaGGGGGCGTATTTTTCTTTGAGCCAGGTTAAtgt     >  1:141373/1‑35 (MQ=255)
                                 gggggggGATTTTTCTTTGAGCCAGGTTAATGCgg   >  1:1680050/1‑35 (MQ=37)
                                 gGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTgg   >  1:7306471‑M2/2‑35 (MQ=255)
                                 gGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTgg   >  1:1269890‑M2/2‑35 (MQ=255)
                                 gGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTgg   <  1:10862690‑M2/34‑1 (MQ=255)
                                 gGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTgg   >  1:20212054‑M2/2‑35 (MQ=255)
                                  ggggggTATTTTTCTTTGAGCCAGGTTAATGTGGc  <  1:8497493/35‑1 (MQ=255)
                                  |                                  
ACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGC  >  REL606/3891505‑3891573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.