New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1076256103 (1.000)12 (0.160) 3/36 NT 15.1% coding (711/2547 nt) torA trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit
?REL606 3800450 = 58 (0.750)intergenic (+10/+31) ECB_03545/yicM hypothetical protein/predicted transporter

Only 100 of 150 total aligned reads displayed.

TAAGGTAGAATGCCCGGATATGTAAGAACAGCAACAACTACTGACCAACGCTTCTTTACCTGATATCAG  >  REL606/3800416‑3800484
                                  |                                  
tAAGGTAGAATGCCCTGATATGTAAGAACAGcaac                                    >  1:17468968/1‑35 (MQ=255)
  aGGTAGAATGCCCGGATATGTAAGAACAGcaacaa                                  >  1:15607447/1‑35 (MQ=255)
  aGGTAGAATGCCCGGATATGTAAGAACAGcaacaa                                  >  1:6892808/1‑35 (MQ=255)
    gTAGAATGCCCGGATATGTAAGAACAGCAACAact                                >  1:11389439/1‑35 (MQ=255)
    gTAGAATGCCCGGATATGTAAGAACAGCAAAAact                                <  1:15663155/35‑1 (MQ=255)
      aGAATGCCCGGATATGTAAGAACAGCAACAactac                              >  1:19642186/1‑35 (MQ=255)
      aGAATGCCCGGATATGTAAGAACAGCAACAactac                              >  1:4862506/1‑35 (MQ=255)
      aGAATGCCCGGATATGTAAGAACAGCAACAactac                              >  1:378683/1‑35 (MQ=255)
       naaTGCCCGGATATGTAAGAACAGCAACAactact                             >  1:4795952/2‑35 (MQ=255)
       gAATGCCCGGATATGTAAGAACAGCAACAactact                             >  1:3390992/1‑35 (MQ=255)
        aaTGCCCGGATATGTAAGAACAGCAACAACTACTg                            >  1:18257101/1‑35 (MQ=255)
         aTGCCCGGATATGTAAGAACAGCAACGACTACTGa                           >  1:2056948/1‑35 (MQ=255)
          tGCCCGGATATGTAAGAACAGCAACAACTACTGAc                          >  1:3242783/1‑35 (MQ=255)
           gCCCGGATATGTAAGAACAGCAACAACTACTGAcc                         >  1:14457383/1‑35 (MQ=255)
            cccGGATATGTAAGAACAGCAACAACTACTGACCa                        >  1:13900358/1‑35 (MQ=255)
            cccGGATATGTAAGAACAGCAACAACTACTGACCa                        >  1:9325588/1‑35 (MQ=255)
            cccGGATATGTAAGAACAGCAACAACTACTGACCa                        >  1:16380404/1‑35 (MQ=255)
             ccGGATATGTAAGAACAGCAACAACTACTGACCaa                       >  1:784046/1‑35 (MQ=255)
             ccGGATATGTAAGAACAGCAACAACTACTGACCaa                       >  1:4734502/1‑35 (MQ=255)
             ccGGATATGTAAGAACAGCAACAACTACTGACCaa                       >  1:19907793/1‑35 (MQ=255)
              gggATATGAAAAACCAGCAACAACTACTGACCAAc                      <  1:17278993/34‑1 (MQ=21)
              cGGATATGTAAGAACAGCAACAACTACTGACCAAc                      >  1:12627552/1‑35 (MQ=255)
              cGGATATGTAAGAACAGCAACAACTACTGACCAAc                      >  1:17507138/1‑35 (MQ=255)
              cGGATATGTAAGAACAGCAACAACTACTGACCAAc                      >  1:13807375/1‑35 (MQ=255)
              cGGATATGTAAGAACAGCAACAACTACTGACCAAc                      >  1:19947390/1‑35 (MQ=255)
              cGGATATGTAAGAACAGCAACAACTACTGACCAAc                      >  1:18734438/1‑35 (MQ=255)
              cGGATATGTAAGAACAGCAACAACTACTGACCAAc                      >  1:18602757/1‑35 (MQ=255)
               ggATATGTAAGAACAGCAACAACTACTGACCAACg                     >  1:16731581/1‑35 (MQ=255)
               ggATATGTAAGAACAGCAACAACTACTGACCAACg                     >  1:15370493/1‑35 (MQ=255)
               ggATATGTAAGAACAGCAACAACTACTGACCAACg                     >  1:2179675/1‑35 (MQ=255)
                gATATGTAAGAACAGCAACAACTACTGACCAACGc                    >  1:18406277/1‑35 (MQ=255)
                 atatgaaaaaccagcaaCAACTACTGACCAACGct                   <  1:10950425‑M2/18‑1 (MQ=255)
                 atatGTAAGAACAGCAACAACTACTGACCAACGct                   >  1:8589627/1‑35 (MQ=255)
                 atatGTAAGAACAGCAACAACTACTGACCAACGct                   >  1:4364781/1‑35 (MQ=255)
                 atatGTAAGAACAGCAACAACTACTGACCAACGct                   >  1:5499926/1‑35 (MQ=255)
                   atgaaaaaccagcaaCAACTACTGACCAACGcttc                 <  1:3602751‑M2/20‑1 (MQ=255)
                   atGTAAGAACAGCAACAACTACTGACCAACGcttc                 >  1:6024187/1‑35 (MQ=255)
                   atGTAAGAACAGCAACAACTACTGACCAACGcttc                 >  1:14843486/1‑35 (MQ=255)
                    tgaaaaaccagcaaCAACTACTGACCAACGcttct                <  1:7512496‑M2/21‑1 (MQ=255)
                    tGTAAGAACAGCAACAACTACTGACCAACGcttct                >  1:10422527/1‑35 (MQ=255)
                    tGTAAGAACAGCAACAACTACTGACCAACGcttct                >  1:19030890/1‑35 (MQ=255)
                     gtaaaaccagcaaCAACTACTGACCAACGcttctt               <  1:1399202‑M2/22‑1 (MQ=255)
                     gaaaaaccagcaaCAACTACTGACCAACGcttctt               <  1:3723104‑M2/22‑1 (MQ=255)
                     gTAAGAACAGCAACAACTACTGACCAACGcttctt               >  1:16172164/1‑35 (MQ=255)
                     gTAAGAACAGCAACAACTACTGACCAACGcttctt               >  1:714435/1‑35 (MQ=255)
                     aaaaaaccagcaaCAACTACTGACCAACGcttctt               <  1:18748438‑M2/22‑1 (MQ=255)
                      tAAGAACAGCAACAACTACTGACCAACGCTTCttt              >  1:20179534/1‑35 (MQ=255)
                      tAAGAACAGCAACAACTACTGACCAACGCTTCttt              >  1:760979/1‑35 (MQ=255)
                      tAAGAACAGCAACAACTACTGACCAACGCTTCttt              >  1:11239173/1‑35 (MQ=255)
                      tAAGAACAGCAACAACTACTGACCAACGCTTCttt              >  1:15699124/1‑35 (MQ=255)
                      tAAGAACAGCAACAACTACTGACCAACGCTTCttt              >  1:56240/1‑35 (MQ=255)
                      tAAGAACAGCAACAACTACTGACCAACGCTTCttt              >  1:15088757/1‑35 (MQ=255)
                      aaagaccagcaaCAACTACTGACCAACGCTTCttt              <  1:190103‑M2/23‑1 (MQ=255)
                      aaaaaccagcaaCAACTACTGACCAACGCTTCttt              <  1:17586635‑M2/23‑1 (MQ=255)
                      aaaaaccagcaaCAACTACTGACCAACGCTTCttt              <  1:15316934‑M2/23‑1 (MQ=255)
                       aaGAACAGCAACAACTACTGACCAACGCTTCTTTa             >  1:11111007/1‑35 (MQ=255)
                       aaGAACAGCAACAACTACTGACCAACGCTTCTTTa             >  1:20097514/1‑35 (MQ=255)
                       aaGAACAGCAACAACTACTGACCAACGCTTCTTTa             >  1:170090/1‑35 (MQ=255)
                       aaGAACACCAACAACTACTGACCAACGCTTCTTTa             >  1:16453588/1‑35 (MQ=255)
                        aGAACAGCAACAACTACTGACCAACGCTTCTTTAc            >  1:4966008/1‑35 (MQ=255)
                        aGAACAGCAACAACTACTGACCAACGCTTCTTTAc            >  1:8251643/1‑35 (MQ=255)
                        aGAACAGCAACAACTACTGACCAACGCTTCTTTAc            >  1:12640073/1‑35 (MQ=255)
                         gAACAGCAACAACTACTGACCAACGCTTCTTTAcc           >  1:20583735/1‑35 (MQ=255)
                         gAACAGCAACAACTACTGACCAACGCTTCTTTAcc           >  1:9645811/1‑35 (MQ=255)
                         aaccagcaaCAACTACTGACCAACGCTTCTTTAcc           <  1:714720‑M2/26‑1 (MQ=255)
                          accagcaaCAACTACTGACCAACGCTTCTTTACCt          <  1:10319329‑M2/27‑1 (MQ=255)
                          accagcaaCAACTACTGACCAACGCTTCTTTACCt          <  1:13382962‑M2/27‑1 (MQ=255)
                          accagcaaCAACTACTGACCAACGCTTCTTTACCt          <  1:2118805‑M2/27‑1 (MQ=255)
                          accagcaaCAACTACTGACCAACGCTTCTTTACCt          <  1:16958685‑M2/27‑1 (MQ=255)
                          aaCAGCAACAACTACTGACCAACGCTTCTTTACCt          >  1:13298373/1‑35 (MQ=255)
                          aaCAGCAACAACTACTGACCAACGCTTCTTTACCt          >  1:9421505/1‑35 (MQ=255)
                           ccagcaaCAACTACTGACCAACGCTTCTTTACCTg         <  1:18230663‑M2/28‑1 (MQ=255)
                           aCAGCAACAACTACTGACCAACGCTTCTTTACCTg         >  1:1053899/1‑35 (MQ=255)
                           aCAGCAACAACTACTGACCAACGCTTCTTTACCTg         >  1:19290567/1‑35 (MQ=255)
                            cagcaaCAACTACTGACCAACGCTTCTTTACCTGa        <  1:14228615‑M2/29‑1 (MQ=255)
                             agcaaCAACTACTGACCAACGCTTCTTTACCTGat       >  1:16477803‑M2/6‑35 (MQ=255)
                             agcaaCAACTACTGACCAACGCTTCTTTACCTGat       >  1:16473844‑M2/6‑35 (MQ=255)
                             agcaaCAACTACTGACCAACGCTTCTTTACCTGat       >  1:16243360‑M2/6‑35 (MQ=255)
                             agcaaCAACTACTGACCAACGCTTCTTTACCTGat       <  1:2894791‑M2/30‑1 (MQ=255)
                             agcaaCAACTACTGACCAACGCTTCTTTACCTGat       <  1:7309926‑M2/30‑1 (MQ=255)
                              gcaaCAACTACTGACCAACGCTTCTTTACCTGata      <  1:8255898‑M2/31‑1 (MQ=255)
                              gcaaCAACTACTGACCAACGCTTCTTTACCTGata      >  1:12249143‑M2/5‑35 (MQ=255)
                               caaCAACTACTGACCAACGCTTCTTTACCTGatat     >  1:16736750‑M2/4‑35 (MQ=255)
                                aaCAACTACTGACCAACGCTTCTTTACCTGATATc    <  1:8964677‑M2/33‑1 (MQ=255)
                                aaCAACTACTGACCAACGCTTCTTTACCTGATATc    >  1:5314974‑M2/3‑35 (MQ=255)
                                aaCAACTACTGACCAACGCTTCTTTACCTGATATc    >  1:1845978‑M2/3‑35 (MQ=255)
                                aaCAACTACTGACCAACGCTTCTTTACCTGATATc    <  1:1399582‑M2/33‑1 (MQ=255)
                                aaCAACTACTGACCAACGCTTCTTTACCTGATATc    <  1:12232466‑M2/33‑1 (MQ=255)
                                aaCAACTACTGACCAACGCTTCTTTACCTGATATc    >  1:11900624‑M2/3‑35 (MQ=255)
                                aaCAACTAATGACCAACGCTTCTTTACCTGATATc    <  1:11770661‑M2/33‑1 (MQ=255)
                                 aCAACTACTGACCAACGCTTCTTTACCTGATATCa   <  1:3163043‑M2/34‑1 (MQ=255)
                                 aCAACTACTGACCAACGCTTCTTTACCTGATATCa   <  1:9743474‑M2/34‑1 (MQ=255)
                                  caacTACTGACCAACGCTTCTTTACCTGATATCAg  <  1:6518317/35‑1 (MQ=255)
                                  caacTACTGACCAACGCTTCTTTACCTGATATCAg  <  1:455438/35‑1 (MQ=255)
                                  caacTACTGACCAACGCTTCTTTACCTGATATCAg  >  1:2881584/1‑35 (MQ=255)
                                  caacTACTGACCAACGCTTCTTTACCTGATATCAg  <  1:18069459/35‑1 (MQ=255)
                                  caacTACTGACCAACGCTTCTTTACCTGATATCAg  >  1:16237278/1‑35 (MQ=255)
                                  caacTACTGACCAACGCTTCTTTACCTGATATCAg  <  1:1618248/35‑1 (MQ=255)
                                  caacTACTGACCAACGCTTCTTTACCTGATATCAg  >  1:15468322/1‑35 (MQ=255)
                                  caacTACTGACCAACGCTTCTTTACCTGATATCAg  <  1:11458094/35‑1 (MQ=255)
                                  |                                  
TAAGGTAGAATGCCCGGATATGTAAGAACAGCAACAACTACTGACCAACGCTTCTTTACCTGATATCAG  >  REL606/3800416‑3800484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.