New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 601491 = | 81 (0.790) | 7 (0.100) | 3/34 | NT | 10.1% | coding (530/1134 nt) | fepE | regulator of length of O‑antigen component of lipopolysaccharide chains |
? | REL606 | 2785963 = | 67 (0.920) | coding (408/1338 nt) | ygcS | predicted transporter |
Only 100 of 162 total aligned reads displayed.
ATGCGCCCAGCAAAATACCGCGATGGCGGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGAAT > REL606/2785929‑2785997 | aaaacggtctgcgcctcttcactggttggcgcggg > 1:19300923‑M2/35‑35 (MQ=255) aaaacggtctgcgcctcttcactggttggcgcggg > 1:17256023‑M2/35‑35 (MQ=255) aaaacggtctgcgcctcttcactggttggcgcggg > 1:8058793‑M2/35‑35 (MQ=255) aaaacggtctgcgcctcttcactggttggcgcggg > 1:3839043‑M2/35‑35 (MQ=255) aTGCGCCCAGCAAAATACCGCGATGGCGGCGCggg > 1:11151810/1‑35 (MQ=255) tGCGCCCAGCAAAATACCGCGATGGCGGCGCgggg > 1:6913160/1‑35 (MQ=255) aaacggtctgcgcctcttcactggttggcgcgggg > 1:12210413‑M2/34‑35 (MQ=255) gcgcCCAGCAAAATACCGCGATGGCGGCGCGGGGa > 1:379874/1‑35 (MQ=255) aacggtctgcgcctcttcactggttggcggggGGa > 1:20281262‑M2/33‑35 (MQ=255) cgcCCAGCAAAATACCGCGATGGCGGCGCGGGGaa < 1:6598126/35‑1 (MQ=255) gcCCAGCAAAATACCGCGATGGCGGCGCGGGGaaa > 1:18827014/1‑35 (MQ=255) gcCCAGCAAAATACCGCGATGGCGGCGCGGGGaaa > 1:4629696/1‑35 (MQ=255) cggtctgcgcctcttcactggttggcgcggGGaaa > 1:6371232‑M2/31‑35 (MQ=255) cggtctgcgcctcttcactggttggcgcggGGaaa > 1:1372307‑M2/31‑35 (MQ=255) ggtctgcgcctcttcactggttggcgcggGGaaaa > 1:11089695‑M2/30‑35 (MQ=255) cccAGCAAAATACCGCGATGGCGGCGCGGGGaaaa < 1:11175604/35‑1 (MQ=255) gtctgcgcctcttcactggttggcgcggGaaaaaa > 1:2867617‑M2/29‑34 (MQ=255) gtctgcgcctcttcactggttggcgcggGGAAAAt > 1:7620071‑M2/29‑35 (MQ=255) gtctgcgcctcttcactggttggcgcggGGAAAAt > 1:5311233‑M2/29‑35 (MQ=255) ccAGCAAAATACCGCGATGGCGGCGCGGGGAAAAt > 1:16704491/1‑35 (MQ=255) ccAGCAAAATACCGCGATGGCGGCGCGGGGAAAAt > 1:7811616/1‑35 (MQ=255) ccAGCAAAATACCGCGATGGCGGCGCGGGGAAAAt < 1:19312898/35‑1 (MQ=255) ccAGCAAAATACCGCGATGGCGGCGCGGGGAAAAt > 1:8053021/1‑35 (MQ=255) ccAGCAAAATACCGCGATGGCGGCGCGGGGAAAAt < 1:11733020/35‑1 (MQ=255) tctgcgcctcttcactggttggcgcggGGAAAAtt > 1:8983690‑M2/28‑35 (MQ=255) cAGCAAAATACCGCGATGGCGGCGCGGGGAAAAtt < 1:10351940/35‑1 (MQ=255) ctgcgcctcttcactggttggcgcggGAAAAatta > 1:17296631‑M2/27‑34 (MQ=255) aGCAAAATACCGCGATGGCGGCGCGGGGAAAATTc < 1:2573752/35‑1 (MQ=255) aGCAAAATACCGCGATGGCGGCGCGGGGAAAATTc > 1:6904934/1‑35 (MQ=255) gCAAAATACCGCGATGGCGGCGCGGGGAAAATTca < 1:12030926/35‑1 (MQ=255) gCAAAATACCGCGATGGCGGCGCGGGGAAAATTca < 1:7395831/35‑1 (MQ=255) gCAAAATACCGCGATGGCGGCGCGGGGAAAATTca < 1:10226113/35‑1 (MQ=255) gCAAAATACCGCGATGGCGGCGCGGGGAAAATTca < 1:10307726/35‑1 (MQ=255) gcgcctcttcactggttggcgcggGGAaaattatc > 1:12868710‑M2/25‑32 (MQ=255) cAAAATACCGCGATGGCGGCGCGTGGAAAATTcag > 1:12874701/1‑35 (MQ=255) cAAAATACCGCGATGGCGGCGCGGGGAAAATTcag < 1:11842972/35‑1 (MQ=255) cAAAATACCGCGATGGCGGCGCGGGGAAAATTcag < 1:20498329/35‑1 (MQ=255) cAAAATACCGCGATGGCGGCGCGGGGAAAATTcag < 1:10738043/35‑1 (MQ=255) cAAAATACCGCGATGGCGGCGCGGGGAAAATAcag > 1:2990802/1‑35 (MQ=255) aaaaTACCGCGATGGCTGCGCGGGGAAAATTcagc > 1:7027974/1‑35 (MQ=255) aaaaTACCGCGATGGCGGCGCGGGGAAAATTcagc > 1:8558642/1‑35 (MQ=255) aaaaTACCGCGATGGCGGCGCGGGGAAAATTcagc < 1:10715966/35‑1 (MQ=255) aaaTACCGCGATGGCGGCGCGTGGAAAATTcagcc > 1:1985661/1‑35 (MQ=255) aaaTACCGCGATGGCGGCGCGGGGAAAATTcagcc < 1:6399310/35‑1 (MQ=255) aaaTACCGCGATGGCGGCGCGGGGAAAATTcagag > 1:18483747/1‑33 (MQ=255) aaaTACAGCGATGGCGGCGCGGGGAAAATTcagcc < 1:10524455/35‑1 (MQ=255) aaTACCGCGATGGCGGCGCGGGGAAAATTcagcca < 1:11508960/35‑1 (MQ=255) aaTACCGCGATGGCGGCGCGGGGAAAATTcagcca < 1:13121411/35‑1 (MQ=255) aTACCGCGATGGCGGCGCGGGGAAAATTtagccag > 1:17731129/1‑35 (MQ=255) tACCGCGATGGCGGCGCGGGGAAAATTaagccagc < 1:8544541/35‑1 (MQ=255) cccGAGATGGCGGCGCGGGGAAAATTCAGCCAGCa < 1:17476841/34‑1 (MQ=255) aCCGCGATGGCGGCGCGGGGAAAATTCAGCCAGCa < 1:6991410/35‑1 (MQ=255) ccGCGATGGCGGCGCGTGGAAAATTCAGCCAGCaa > 1:15200619/1‑35 (MQ=255) ccGCGATGGCGGCGCGGGGAAAATTCAGCCAGCaa < 1:11480503/35‑1 (MQ=255) ccGCGATGGCGGCGCGGGGAAAAATCAGCCAGCaa > 1:5735719/1‑35 (MQ=255) cgcgATGGGGGCGCGGGGAAAATTCAGCCAGCAAg < 1:18125931/35‑1 (MQ=255) cgcgATGGCGGCGCGGGGAAAATTCAGCCAGCAAg < 1:1915852/35‑1 (MQ=255) cgcgATGGCGGCGCGGGGAAAATTCAGCCAGCAAg < 1:808213/35‑1 (MQ=255) cgATGGCGGCGCGGGGAAAATTCAGCCAGCAAGgt > 1:15175878/1‑35 (MQ=255) cgATGGCGGCGCGGGGAAAATTCAGCCAGCAAGgt > 1:12759156/1‑35 (MQ=255) aTGGCGGCGCGGGGAAAATTCAGCCAGCAAGgtgt < 1:20248894/35‑1 (MQ=255) aTGGCGGCGCGGGGAAAATTCAGCCAGCAAGgtgt < 1:16723012/35‑1 (MQ=255) tGGCGGCGCGGGGAAAATTCAGCCAGCAAGGtgtg > 1:5465639/1‑35 (MQ=255) tGGCGGCGCGGGGAAAATTCAGCCAGCAAGGtgtg < 1:6226965/35‑1 (MQ=255) tGGCGGCGCGGGGAAAATTCAGCCAGCAAGGtgtg > 1:9575061/1‑35 (MQ=255) tGGCGGCGCGGGGAAAATTCAGCCAGCAAGGtgtg > 1:14773759/1‑35 (MQ=255) tGGCGGCGCGGGGAAAATTCAGCCAGCAAGGtgtg < 1:17634782/35‑1 (MQ=255) ggcggcGCGGGGAAAATTCAGCCAGCAAGGTGTGa < 1:20189116/35‑1 (MQ=255) gcggcgCGGGGAAAATTCAGCCAGCAAGGTGTGAc > 1:20409089/1‑35 (MQ=255) cggcgCGGGGAAAATTCAGCCAGCAAGGTGTGAcc > 1:11699688/1‑35 (MQ=255) cggcgCGGGGAAAATTCAGCCAGCAAGGTGTGAcc < 1:548732/35‑1 (MQ=255) cggcgCGGGGAAAATTCAGCCAGCAAGGTGTGAcc < 1:1011190/35‑1 (MQ=255) ggcgcggGGAAAATTCAGCCAGCAAGGTGTGACCt > 1:11440918‑M2/8‑35 (MQ=255) ggcgcggGGAAAATTCAGCCAGCAAGGTGTGACCt > 1:1798062‑M2/8‑35 (MQ=255) ggcgcggGGAAAATTCAGCCAGCAAGGTGTGACCt > 1:17771996‑M2/8‑35 (MQ=255) ggcgcggGGAAAATTCAGCCAGCAAGGTGTGACCt < 1:2060017‑M2/28‑1 (MQ=255) gcgcggGGAAAATTCAGCCAGCAAGGTGTGACCTa < 1:5526570‑M2/29‑1 (MQ=255) gcgcggGGAAAATTCAGCCAGCAAGGTGTGACCTa > 1:10781198‑M2/7‑35 (MQ=255) gcgcggGGAAAATTCAGCCAGCAAGGTGTGACCTa < 1:6165851‑M2/29‑1 (MQ=255) cgcggGGAAAATTCAGCCAGCAAGGTGTGACCTAc > 1:19686490‑M2/6‑35 (MQ=255) cgcggGGAAAATTCAGCCAGCAAGGTGTGACCTAc < 1:16313155‑M2/30‑1 (MQ=255) gcggGGAAAATTCAGCCAGCAAGGTGTGACCTACt > 1:5058229‑M2/5‑35 (MQ=255) gcggGGAAAATTCAGCCAGCAAGGTGTGACCTACt > 1:19578397‑M2/5‑35 (MQ=255) gcggGGAAAATTCAGCCAGCAAGGTGTGACCTACt < 1:18821020‑M2/31‑1 (MQ=255) gcggGGAAAATTCAGCCAGCAAGGTGTGACCTACt < 1:12483626‑M2/31‑1 (MQ=255) cggGGAAAATTCAGCCAGCAAGGTGTGACCTACTg > 1:1102675‑M2/4‑35 (MQ=255) cggGGAAAATTCAGCCAGCAAGGTGTGACCTACTg > 1:15099608‑M2/4‑35 (MQ=255) cggGGAAAATTCAGCCAGCAAGGTGTGACCTACTg > 1:5726514‑M2/4‑35 (MQ=255) cggGGAAAATTCAGCCAGCAAGGTGTGACCTACTg > 1:4753052‑M2/4‑35 (MQ=255) cggGGAAAATTCAGCCAGCAAGGTGTGACCTACTg < 1:2307384‑M2/32‑1 (MQ=255) ggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGa > 1:17005242‑M2/3‑35 (MQ=255) ggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGa < 1:14855203‑M2/33‑1 (MQ=255) ggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGa > 1:13222914‑M2/3‑35 (MQ=255) ggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGa > 1:6408998‑M2/3‑35 (MQ=255) ggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGa > 1:4864003‑M2/3‑35 (MQ=255) ggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGa > 1:4349756‑M2/3‑35 (MQ=255) gGGAAAATTCAGCCAGCAAGGTGTGACCTACTGaa > 1:17400440‑M2/2‑35 (MQ=255) gGGAAAATTCAGCCAGCAAGGTGTGACCTACTGaa < 1:12096673‑M2/34‑1 (MQ=255) gGGAAAATTCAGCCAGCAAGGTGTGACCTACTGaa < 1:9329769‑M2/34‑1 (MQ=255) gGGAAAATTCAGCCAGCAAGGTGTGACCTACTGaa > 1:9365553‑M2/2‑35 (MQ=255) | ATGCGCCCAGCAAAATACCGCGATGGCGGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGAAT > REL606/2785929‑2785997 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |