New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3780471 =81 (0.790)7 (0.120) 4/28 NT 14.0% coding (503/1359 nt) ECB_03520 conserved hypothetical protein
?REL606 = 4600662 39 (0.650)coding (33/606 nt) osmY periplasmic protein

Only 100 of 114 total aligned reads displayed.

AGCATTGCACCGATAGAAAAACCGACACCCGCCCAGCCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3780513‑3780471
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagcagAGTTTTCGAAATCTTCAGTCTTGTCATAGTCATC  <  REL606/4600662‑4600629
                                                                             
AGCATTGCCCCGATAGAAAAACCGACACCCGCCCA                                            <  1:12338103/35‑1
AGCATTGCACCGATAGAAAAACCGACACCCGCCCA                                            >  1:1012015/1‑35
 GCATTGCACCTATAGAAAAACCGACACCCGCCCAG                                           >  1:2197316/1‑35
 GCATTGCACCGATAGAAAAACCGACACCCGCCCAG                                           >  1:19011788/1‑35
 GCATTGCACCGATAGAAAAACCGACACCCGCCCAG                                           >  1:4704354/1‑35
  CATTGCACCGATAGAAAAACCGACACCCGCCCAGC                                          >  1:7314278/1‑35
  CATTGCACCGATAGAAAAACCGACACCCGCCCAGC                                          >  1:13250582/1‑35
  CATTGCACCGATAGAAAAACCGACACCCGCCCAGC                                          >  1:12363155/1‑35
   ATTGCACCGATAGAAAAACCGACACCCGCCCAGCC                                         >  1:3503572/1‑35
   ATTGCACCGATAGAAAAACCGACACCCGCCCAGCC                                         >  1:17384636/1‑35
   ATTGCACCGATAGAAAAACCGACACCCGCCCAGCC                                         >  1:14742975/1‑35
     TGCACCGATAGAAAAACCGACACCCGCCCAGCCAG                                       >  1:16041444/1‑35
       CACCGATAGAAAAACCGACACCCGCCCAGCCAGCA                                     >  1:13811252/1‑35
        ACCGATAGAAAAACCGACACCCGCCCAGCCAGCAG                                    >  1:4115731/1‑35
        ACCGATAGAAAAACCGACACCCGCCCAGCCAGCAG                                    >  1:10180248/1‑35
                        ACACCCCCCCAGCCAGCAGAGTTTTCGAAATCTTC                    <  1:3101271/35‑1
                         CACCCCCCCAGCCAGCAGAGTTTTCGAAATCTTCA                   <  1:5795042/35‑1
                          ACCCCCCCAGCCAGCAGAGTTTTCGAAATCTTCAG                  <  1:7036776/35‑1
                          ACCCCCCCAGCCAGCAGAGTTTTCGAAATCTTCAG                  <  1:13646117/35‑1
                           CCCTCCCAGCCAGCAGAGTTTTCGAAATCTTCAGT                 <  1:2795779/35‑1
                           CCCCCCCAGCCAGCAGAGTTTTCGAAATCTTCAGT                 <  1:1232390/35‑1
                           CCCCCCCAGCCAGCAGAGTTTTCGAAATCTTCAGT                 <  1:17057088/35‑1
                            cccCCCAGCCAGCAGAGTTTTCGAAATCTTCAGTC                <  1:17187510/32‑1
                            cacCCCAGCCAGCAGAGTTTTCGAAATCTTCAGTC                <  1:7533890/32‑1
                             ccCCCAGCCAGCAGAGTTTTCGAAATCTTCAGTCT               <  1:4682437/33‑1
                              tCCCAGCCAGCAGAGTTTTCGAAATCTTCAGTCTT              <  1:13042625/34‑1
                              cCCCAGCCAGCAGAGTTTTCGAAATCTTCAGTCTT              <  1:18277884/34‑1
                              cCCCAGCCAGCAGAGTTTTCGAAATCTTCAGTCTT              <  1:15984954/34‑1
                              cCCCAGCCAGCAGAGTTTTCGAAATCTTCAGTCTT              <  1:14076015/34‑1
                              cCCCAGCCAGCAGAGTTTTCGAAATCTTCAGTCTT              <  1:12403167/34‑1
                               CCCAGCCAGCAGAGTTTTCGAAATCTTCAGTCTTG             <  1:1064342/35‑1
                               CCCAGCCAGCAGAGTTTTCGAAATCTTCAGTCTTG             <  1:16103941/35‑1
                                CCAGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGT            <  1:8659950/35‑1
                                CCAGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGT            <  1:14388216/35‑1
                                CCAGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGT            <  1:6886282/35‑1
                                CCAGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGT            <  1:4027112/35‑1
                                CCAGCCAGCAGAGTTTTCGAAATCTTCAGTATTGT            <  1:12195037/35‑1
                                 CAGCCAGCAGAGTTTTCGAAGTCTTCAGTCTTGTC           <  1:15973394/35‑1
                                 CAGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTC           <  1:11814685/35‑1
                                 CAGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTC           >  1:18291154/1‑35
                                 CAGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTC           <  1:18243772/35‑1
                                 CAGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTC           <  1:12812419/35‑1
                                 CAGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTC           >  1:15333603/1‑35
                                 CAGCCAGCAGAGTTTTCGAAATCTTCAGTCCTGTC           >  1:3899591/1‑35
                                 CAGCCAGCAGAGTTTTCGAAAGCTTCAGTCTTGTC           <  1:2475813/35‑1
                                  AGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCA          >  1:19103222/1‑35
                                  AGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCA          >  1:3802193/1‑35
                                  AGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCA          <  1:8048150/35‑1
                                  AGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCA          <  1:9357111/35‑1
                                  AGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCA          <  1:12328112/35‑1
                                  AGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCA          >  1:10417800/1‑35
                                  AGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCA          >  1:15993667/1‑35
                                  AGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCA          >  1:6005318/1‑35
                                  AGCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCA          >  1:15645152/1‑35
                                   GCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCAT         <  1:5693635/35‑1
                                   GCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCAT         >  1:10811749/1‑35
                                   GCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCAT         <  1:19901730/35‑1
                                   GCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCAT         <  1:6115850/35‑1
                                   GCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCAT         <  1:2440542/35‑1
                                   GCCAGCAGAGTTTTCGAAATCTTCAGTCTTGTAAT         <  1:3003850/35‑1
                                    CCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATA        <  1:4225400/35‑1
                                    CCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATA        >  1:5745571/1‑35
                                    CCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATA        >  1:20396105/1‑35
                                    CCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATA        >  1:13454011/1‑35
                                    CCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATA        <  1:19068818/35‑1
                                    CCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATA        >  1:1832209/1‑35
                                    CCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATA        <  1:16851481/35‑1
                                    CCAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATA        >  1:17503288/1‑35
                                    CCAGCAGAGTTTTCGAAATCTTAAGTCTTGTCATA        <  1:4135947/35‑1
                                     CAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATAG       <  1:10498160/35‑1
                                     CAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATAG       <  1:20255057/35‑1
                                     CAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATAG       >  1:8515940/1‑35
                                     CAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATAG       <  1:8379883/35‑1
                                     CAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATAG       >  1:19300147/1‑35
                                     CAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATAG       >  1:16604637/1‑35
                                     CAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATAG       >  1:56710/1‑35
                                     CAGCAGAGTTTTCGAAATCTTCAGTCTTGTCATAG       >  1:5030870/1‑35
                                     CAGCAGAGTTTTCGAAATCTTCAATCTTGTCATAG       >  1:9426167/1‑35
                                      AGCAGAGTTTTCGAAATCTTCAGTCTTGTCATAGT      >  1:10489450/1‑35
                                      AGCAGAGTTTTCGAAATCTTCAGTCTTGTCATAGT      <  1:3572471/35‑1
                                      AGCAGAGTTTTCGAAATCTTCAGTCTTGTCATAGT      <  1:13866748/35‑1
                                      AGCAGAGTTTTCGAAATCTTCAGTCTTGTCATAGT      <  1:15095336/35‑1
                                      AGCAGAGTTTTCGAAATCTTCAGTCTTGTCATAGT      >  1:511890/1‑35
                                       GCAGAGTTTTCGAAATCTTCAGTCTTGTCATAGTC     <  1:15705951/35‑1
                                       GCAGAGTTTTCGAAATCTTCAGTCTTGTCATAGTC     >  1:20292635/1‑35
                                       GCAGAGTTTTCGAAATCTTCAGTCTTGTCATAGTC     <  1:844288/35‑1
                                        CAGAGTTTTCGAAATCTTCAGTCTTGTCATAGTCA    >  1:20405193/1‑35
                                        CAGAGTTTTCGAAATCTTCAGTCTTGTCATAGTCA    >  1:11232203/1‑35
                                        CAGAGTTTTCGAAATCTTCAGTCTTGTCATAGTCA    >  1:1273861/1‑35
                                        CAGAGTTTTCGAAATCTTCAGTCTTGTCATAGTCA    >  1:6655843/1‑35
                                        CAGAGTTTTCGAAATCTTCAGTCTTGTCATAGTCA    >  1:18253853/1‑35
                                         AGAGTTTTCGAAATCTTCAGTCTTGTCATAGTCAT   >  1:18022211/1‑35
                                         AGAGTTTTCGAAATCTTCAGTCTTGTCATAGTCAT   <  1:1325700/35‑1
                                         AGAGTTTTCGAAATCTTCAGTCTTGTCATAGTCAT   <  1:17289871/35‑1
                                         AGAGTTTTCGAAATCTTCAGTCTTGTCATAGTCAT   <  1:7969452/35‑1
                                         AGAGTTTTCGAAATCTTCAGTCTTGTCATAGTCAT   >  1:6659907/1‑35
                                         AGAGTTTTCGAAATCTTCAGTCTTGTCATAGTCAT   >  1:606854/1‑35
                                          GAGTTTTCGAAATCTTCAGTCTTGTCATAGTCATC  <  1:19455258/35‑1
                                          GAGTTTTCGAAATCTTCAGTCTTGTCATAGTCATC  <  1:20190893/35‑1
                                          GAGTTTTCGAAATCTTCAGTCTTGTCATAGTCATC  <  1:1920423/35‑1
                                                                             
AGCATTGCACCGATAGAAAAACCGACACCCGCCCAGCCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3780513‑3780471
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagcagAGTTTTCGAAATCTTCAGTCTTGTCATAGTCATC  <  REL606/4600662‑4600629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.