New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 285065 =85 (0.830)8 (0.120) 3/30 NT 14.3% coding (529/4257 nt) eaeH attaching and effacing protein, pathogenesis factor
?REL606 = 3978905 43 (0.670)coding (1426/2262 nt) metE 5‑methyltetrahydropteroyltriglutamate‑ homocysteine methyltransferase

Only 100 of 156 total aligned reads displayed.

TATCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGGACTGGATGTGCTGGTACATGGCGAGGCCGAGCG  >  REL606/3978871‑3978939
                                  |                                  
tatCAAGCAGGCCATTGTTGAGCAGGAACGTTTgg                                    >  1:5576430/1‑35 (MQ=255)
tatCAAGCAGGCCATTGTTGAGCAGGAACGTTTgg                                    >  1:6587046/1‑35 (MQ=255)
 aTCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGg                                   >  1:15388579‑M2/1‑34 (MQ=255)
 aTCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGg                                   <  1:18584824‑M2/35‑2 (MQ=255)
 aTCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGg                                   >  1:1961860‑M2/1‑34 (MQ=255)
 aTCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGg                                   <  1:3368843‑M2/35‑2 (MQ=255)
 aTCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGg                                   >  1:7067580‑M2/1‑34 (MQ=255)
 aTCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGg                                   <  1:10119985‑M2/35‑2 (MQ=255)
  tCAAGCAGGCCATTGTTGAGCAGGAACGTTTTGga                                  <  1:4914183‑M2/35‑3 (MQ=255)
  tCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGga                                  <  1:11206123‑M2/35‑3 (MQ=255)
   cAAGCAGGCCATTGTTGAGCAGGAACGTTTGTgac                                 <  1:1823478‑M2/35‑4 (MQ=255)
   cAAGCAGGCCATTGTTGAGCAGGAACGTTTGTgac                                 <  1:8953542‑M2/35‑4 (MQ=255)
   cAAGCAGGCCATTGTTGAGCAGGAACGTTTGGgac                                 >  1:1456399‑M2/1‑32 (MQ=255)
   cAAGCAGGCCATTGTTGAGCAGGAACGTTTGGgac                                 >  1:1434493‑M2/1‑32 (MQ=255)
    aaGCAGGCCATTGTTGAGCAGGAACGTTTGGgact                                <  1:16180956‑M2/35‑5 (MQ=255)
    aaGCAGGCCATTGTTGAGCAGGAACGTTTGGgact                                >  1:8254607‑M2/1‑31 (MQ=255)
    aaGCAGGCCATTGTTGAGCAGGAACGTTTGGgact                                >  1:7039548‑M2/1‑31 (MQ=255)
     aGCAGGCCATTGTTGAGCAGGAACGTTTGGgactg                               >  1:12561451‑M2/1‑30 (MQ=255)
     aGCAGGCCATTGTTGAGCAGGAACGTTTGGgactg                               >  1:6681755‑M2/1‑30 (MQ=255)
     aGCAGGCCATTGTTGAGCAGGAACGTTTGGgactg                               >  1:9113318‑M2/1‑30 (MQ=255)
      gCAGGCCATTGTTGAGCAGGAACGTTTGGgactgg                              >  1:17804736‑M2/1‑29 (MQ=255)
      gCAGGCCATTGTTGAGCAGGAACGTTTGGgactgg                              >  1:1982808‑M2/1‑29 (MQ=255)
       cAGGCCATTGTTGAGCAGGAACGTTTGGgactgga                             <  1:17683769‑M2/35‑8 (MQ=255)
       cAGGCCATTGTTGAGCAGGAACGTTTGGgactgga                             <  1:748071‑M2/35‑8 (MQ=255)
       cAGGCCATTGTTGAGCAGGAACGTTTGGgactgga                             <  1:3187638‑M2/35‑8 (MQ=255)
       cAGGCCATTGTTGAGCAGGAACGTTTGGgactgga                             <  1:7616638‑M2/35‑8 (MQ=255)
       cAGGCCATTGTTGAGCAGGAACGTTTGGgactgga                             <  1:12631448‑M2/35‑8 (MQ=255)
       cAGGCCATTGTTGAGCAGGAACGTTTGGgactgag                             <  1:14735309‑M2/35‑8 (MQ=255)
        aGGCCATTGTTGAGCAGGAACGTTTGGgactggat                            >  1:19606032‑M2/1‑27 (MQ=255)
        aGGCCATTGTTGAGCAGGAACGTTTGGgactggat                            <  1:377875‑M2/35‑9 (MQ=255)
        aGGCCATTGTTGAGCAGGAACGTTTGGgactggat                            <  1:16442134‑M2/35‑9 (MQ=255)
        aGGCCATTGTTGAGCAGGAACGTTTGGgactggat                            <  1:16164590‑M2/35‑9 (MQ=255)
        aGGCCATTGTTGAGCAGGAACGTTTGGgactggat                            <  1:7233755‑M2/35‑9 (MQ=255)
        aGGCCATTGTTGAGCAGGAACGTTTGGgactggat                            >  1:13125035‑M2/1‑27 (MQ=255)
        aGGCCATTGTTGAGCAGGAACGTTTGGgactggat                            >  1:11592245‑M2/1‑27 (MQ=255)
         ggCCATTGTTGAGCAGGAACGTTTTGgactggatg                           <  1:6152178‑M2/35‑10 (MQ=255)
         ggCCATTGTTGAGCAGGAACGTTTGGgactggatg                           <  1:661861‑M2/35‑10 (MQ=255)
         ggCCATTGTTGAGCAGGAACGTTTGGgactggatg                           >  1:12123272‑M2/1‑26 (MQ=255)
         ggCCATTGTTGAGCAGGAACGTTTGGgactggatg                           <  1:7588119‑M2/35‑10 (MQ=255)
         ggCAATTGTTGAGCAGGAACGTTTGGgactggatg                           >  1:10261748‑M2/1‑26 (MQ=255)
          gCCATTGTTGAGCAGGAACGTTTGGgactggatgg                          <  1:15332343‑M2/35‑11 (MQ=255)
          gCCATTGTTGAGCAGGAACGTTTGGGACTGGAtgt                          <  1:8603036/35‑1 (MQ=255)
           ccATTGTTGAGCAGGAACGTTTGGGACTGGAtgtg                         <  1:9822218/35‑1 (MQ=255)
            cATTGTTGAGCAGGAACGTTTGGgactggatgggg                        <  1:2266948‑M2/35‑13 (MQ=255)
            cATTGTTGAGCAGGAACGTTTGGGACTGTATGTGc                        >  1:8611957/1‑35 (MQ=255)
             aTTGTTGAGCAGGAACGTTTGGgactggatggggt                       <  1:14519705‑M2/35‑14 (MQ=255)
             aTTGTTGAGCAGGAACGTTTGGgactggatggggg                       <  1:16410426‑M2/35‑14 (MQ=255)
             aTTGTTGAGCAGGAACGTTTGGgactggatggggg                       <  1:3725135‑M2/35‑14 (MQ=255)
             aTTGTTGAGCAGGAACGTTTGGgactggatggggg                       <  1:1906697‑M2/35‑14 (MQ=255)
             aTTGTTGAGCAGGAACGTTTGGGACTGGATGTGCt                       <  1:16703746/35‑1 (MQ=255)
             aTTGTTGAGCAGGAACGTTTGGGACTGGATGTGCt                       <  1:3013930/35‑1 (MQ=255)
             aTTGTTGAGCAGGAACGTTTGGGACTGGATATGCt                       <  1:19823627/35‑1 (MQ=255)
              ttgttgAGCAGGAACGTTTGGgactggatgggggg                      <  1:14337524‑M2/35‑15 (MQ=255)
              ttgttgAGCAGGAACGTTTGGGACTGGATGTGCTg                      <  1:13185843/35‑1 (MQ=255)
              ttgttgAGCAGGAACGTTTGGGACTGGATGTGCTg                      <  1:15678452/35‑1 (MQ=255)
               tgttgAGCAGGAACGTTTGGgactggatggggggg                     <  1:12385184‑M2/35‑16 (MQ=255)
               tgttgAGCAGGAACGTTTGGgactggatggggggg                     <  1:5958867‑M2/35‑16 (MQ=255)
               tgttgAGCAGGAACGTTTGGGACTGGATGTGCTgg                     <  1:954267/35‑1 (MQ=255)
               tgttgAGCAGGAACGTTTGGGACTGGATGTGCTgg                     <  1:2517380/35‑1 (MQ=255)
               tgttgAGCAGGAACGTTTGGGACTGGATGTGCTgg                     <  1:7368704/35‑1 (MQ=255)
               tgttgAGCAGGAACGTTTGGGACTGGATGTGCTgg                     <  1:3840229/35‑1 (MQ=255)
                gttgAGCAGGAACGTTTGGgactggatgggggggg                    <  1:9497143‑M2/35‑17 (MQ=255)
                gttgAGCAGGAACGTTTGGgactggatgggggggg                    <  1:12429249‑M2/35‑17 (MQ=255)
                gttgAGCAGGAACGTTTGGGACTGGATGTGCTGGt                    <  1:20544495/35‑1 (MQ=255)
                gttgAGCAGGAACGTTTGGGACTGGATGTGCTGGt                    <  1:14935413/35‑1 (MQ=255)
                gttgAGCAGGAACGTTTGGGACTGGATGTGCTGGt                    <  1:4355282/35‑1 (MQ=255)
                 ttgAGCAGGAACGTTTGGgactggatggggggggt                   <  1:2479648‑M2/35‑18 (MQ=255)
                 ttgAGCAGGAACGTTTGGgactggatggggggggg                   <  1:6673432‑M2/35‑18 (MQ=255)
                 ttgAGCAGGAACGTTTGGgactggatggggggggg                   <  1:12855924‑M2/35‑18 (MQ=255)
                 ttgAGCAGGAACGTTTGGGACTGGATGTGCTGGTa                   <  1:10813232/35‑1 (MQ=255)
                 ttgAGCAGGAACGTTTGGGACTGGATGTGCTGGTa                   <  1:12275310/35‑1 (MQ=255)
                  tgAGCAGGAACGTTTGGGACTGGATGTGCAGGTAc                  <  1:13489852/35‑1 (MQ=255)
                   gAGCAGGAACGTTTGGGACTGGATGTGCTGGTACa                 <  1:15903820/35‑1 (MQ=255)
                   gAGCAGGAACGTTTGGGACTGGATGTGCTGGTACa                 <  1:11592833/35‑1 (MQ=255)
                   gAGCAGGAACGTTTGGGACTGGATGTGCTGGTACa                 <  1:13756891/35‑1 (MQ=255)
                   gAGCAGGAACGTTTGGGACTGGATGGGGTGGtgaa                 >  1:14695529/1‑32 (MQ=25)
                   gAGCAGGAACGTTTGGGACTGGATGGGGTGGGACa                 >  1:3450142/1‑35 (MQ=25)
                    aGCAGGAACGTTTGGGACTGGATGTGCTGGTACAt                <  1:17589283/35‑1 (MQ=255)
                     gCAGGAACGTTTGGGACTGGATGTGCTGGTACATg               <  1:256709/35‑1 (MQ=255)
                     gCAGGAACGTTTGGGACTGGATGTGCTGGTACATg               <  1:16841690/35‑1 (MQ=255)
                     gCAGGAACGTTTGGGACTGGATGTGCTGGTACATg               <  1:1843508/35‑1 (MQ=255)
                     gCAGGAACGTTTGCGACTGGATGTGCTGGTACATg               <  1:15048434/35‑1 (MQ=255)
                       aGGAACGTTTGGGACTGGATGTGCTGGTACATGGc             <  1:8680878/35‑1 (MQ=255)
                       aGGAACGTTTGGGACTGGATGTGCTGGTACATGGc             <  1:13573058/35‑1 (MQ=255)
                       aGGAACGTTTGGGACTGGATGTGCTGGTACATGGc             <  1:12912102/35‑1 (MQ=255)
                        ggAACGTTTGGGACTGGATGTGCTGGTACATGGCg            <  1:14203701/35‑1 (MQ=255)
                        ggAACGTTTGGGACTGGATGTGCTGGTACATGGCg            <  1:6266943/35‑1 (MQ=255)
                        ggAACGTTTGGGACTGGATGTGCTGGTACATGGCg            <  1:18147539/35‑1 (MQ=255)
                        ggAACGTTAGGGACTGGATGTGCTGGTACATGGCg            <  1:9203220/35‑1 (MQ=255)
                         gAACGTTTGGGACTGGATGTGCTGGTACATGGCGa           <  1:13807823/35‑1 (MQ=255)
                              tttGGGACTGGATGTGCTGGTACATGGCGAGGCCg      <  1:12015053/35‑1 (MQ=255)
                              tttGGGACTGGATGTGCTGGTACATGGCGAGGCCg      <  1:9153050/35‑1 (MQ=255)
                               ttGGGACTGGATGTGCTGGTACATGGCGAGGCCGa     <  1:15839013/35‑1 (MQ=255)
                               ttGGGACTGGATGTGCTGGTACATGGCGAGGCCGa     <  1:20331537/35‑1 (MQ=255)
                               ttGGGACTGGATGTGCTGGTACATGGCGAGGCCGa     <  1:7806297/35‑1 (MQ=255)
                                tGGGACTGGATGTGCTGGTACATGGCGAGGCCGAg    <  1:13140581/35‑1 (MQ=255)
                                 gggACTGGATGTGCTGGTACATGGCGAGGCCGAGc   <  1:5726553/35‑1 (MQ=255)
                                 gggACTGGATGTGCTGGTACATGGCGAGGCCGAGc   <  1:4482102/35‑1 (MQ=255)
                                 gggACTGGATGTGCTGGTACATGGCGAGGCCGAGc   <  1:218900/35‑1 (MQ=255)
                                 gggACTGGATGTGCTGGTACATGGCGAGGCCGAGc   <  1:4015051/35‑1 (MQ=255)
                                  |                                  
TATCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGGACTGGATGTGCTGGTACATGGCGAGGCCGAGCG  >  REL606/3978871‑3978939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.