New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1183967102 (0.990)15 (0.150) 4/46 NT 15.2% intergenic (+43/+40) ycfR/ycfS hypothetical protein/hypothetical protein
?REL606 = 4549416 69 (0.700)coding (18/1233 nt) yjiO multidrug efflux system protein

Only 100 of 136 total aligned reads displayed.

ACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT  >  REL606/4549382‑4549450
                                   |                                  
  gCCATCGGGAAAAACAGCGTGGCGGGGTGGCgggg                                  >  1:14404126/1‑34 (MQ=25)
  gCCATCGGGAAAAACAGCGTGGCGGCATGGCGGgg                                  <  1:8090966‑M2/35‑3 (MQ=255)
  gCCATCGGGAAAAACAGCGTGGCGGCATGGCGGgg                                  <  1:12102784‑M2/35‑3 (MQ=255)
  gCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGt                                  <  1:8624043/35‑1 (MQ=255)
   ccATCGGGAAAAACAGCGTGGCGGCATGGGGGggg                                 <  1:10621928‑M2/35‑4 (MQ=255)
   ccATCGGGAAAAACAGCGTGGCGGCATGGCGGggg                                 <  1:20451367‑M2/35‑4 (MQ=255)
   ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTa                                 <  1:12310457/35‑1 (MQ=255)
   ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTa                                 <  1:12735869/35‑1 (MQ=255)
    cagcGGGAAAAACAGCGTGGCGGCATGGCGGGTaa                                <  1:11142084/32‑1 (MQ=255)
     aTCGGGAAAAACAGCGTGGCGGCATGGCGGgggga                               <  1:2734175‑M2/35‑6 (MQ=255)
     aTCGGGAAAAACAGCGTGGCGGCATGGCGGgggga                               <  1:11239219‑M2/35‑6 (MQ=255)
     aTCGGGAAAAACAGCGTGGCGGCATGGCGGgggga                               <  1:11840345‑M2/35‑6 (MQ=255)
     aTCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaa                               <  1:16462468/35‑1 (MQ=255)
      tCGGGAAAAACAGCGTTGCGGCATGGCGGggggaa                              <  1:9448927‑M2/35‑7 (MQ=255)
      tCGGGAAAAACAGCGTGGCGGCATGGCGGgggaaa                              <  1:7759203‑M2/35‑7 (MQ=255)
      tCGGGAAAAACAGCGTGGCGGCATGGCGGgggaaa                              <  1:9421530‑M2/35‑7 (MQ=255)
      tCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaa                              <  1:7297243/35‑1 (MQ=255)
      tCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaa                              <  1:1084766/35‑1 (MQ=255)
      tCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaa                              <  1:14778394/35‑1 (MQ=255)
       cGGGAAAAACAGCGTGGCGGCATGGCGGgggaaaa                             <  1:12370689‑M2/35‑8 (MQ=255)
       cGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaa                             <  1:15776704/35‑1 (MQ=255)
       cGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaa                             <  1:9487320/35‑1 (MQ=255)
        gggAAAAACAGCGTGGCGGCATGGCGGgggaaaaa                            <  1:12979548‑M2/35‑9 (MQ=255)
        gggAAAAACAGCGTGGCGGCATGGCGGgggaaaaa                            <  1:16185623‑M2/35‑9 (MQ=255)
        gggAAAAACAGCGTGGCGGCATGGCGGgggaaaaa                            <  1:16269‑M2/35‑9 (MQ=255)
        gggAAAAACAGCGTGGCGGCATGGCGGGTaaaaaa                            <  1:15121711/35‑1 (MQ=255)
         ggAAAAACAGCGTGGCGGCATGGCGGggggaaaaa                           <  1:2945115‑M2/35‑10 (MQ=255)
         ggAAAAACAGCGTGGCGGCATGGCGGgggaaaaaa                           <  1:17518976‑M2/35‑10 (MQ=255)
         ggAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa                           <  1:18595415/35‑1 (MQ=255)
          gAAAAACAGCGTGGCTGCATGGCGGGGaaaaaaaa                          >  1:16699024/1‑34 (MQ=37)
          gAAAAACAGCGTGGCTGCATGGCGGGGAAAAAAAc                          >  1:14858419/1‑35 (MQ=37)
          gAAAAACAGCGTGGCGGCATGGCGGggggaaaaaa                          <  1:1288440‑M2/35‑11 (MQ=255)
          gAAAAACAGCGTGGCGGCATGGCGGggggaaaaaa                          <  1:8198188‑M2/35‑11 (MQ=255)
          gAAAAACAGCGTGGCGGCATGGCGGgggaaaaaaa                          <  1:15658226‑M2/35‑11 (MQ=255)
          gAAAAACAGCGTGGCGGCATGGCGGgggaaaaaaa                          <  1:6746825‑M2/35‑11 (MQ=255)
          gAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAc                          <  1:477176/35‑1 (MQ=255)
          gAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAc                          <  1:8786577/35‑1 (MQ=255)
           aaaaaCAGCGTGGCGGCATGGCTGGGGaaaaaaaa                          >  1:6684433/1‑34 (MQ=18)
           aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACg                         <  1:393526/35‑1 (MQ=255)
            aaaaCAGCGTGGCTGCATGGCGGGGaaaaaaaaga                        >  1:6640442/1‑32 (MQ=25)
            aaaaCAGCGTGGCGGCATGGCGGGGgaaaaaaaaa                        >  1:9568692/1‑32 (MQ=21)
            aaaaCAGCGTGGCGGCATGGCGGGGgaaaaaaaaa                        >  1:11325532/1‑32 (MQ=21)
             aaaCAGCGTGGCGGCATGGCGGggggaaaaaaaaa                       <  1:12292925‑M2/35‑14 (MQ=255)
             aaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                       <  1:18479089/35‑1 (MQ=255)
              aaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTgg                      <  1:4458521/35‑1 (MQ=255)
               aCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGc                     <  1:2062924/35‑1 (MQ=255)
               aCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGc                     <  1:9564729/35‑1 (MQ=255)
               aCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGc                     <  1:13559334/35‑1 (MQ=255)
                cAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa                    <  1:8911689/35‑1 (MQ=255)
                 aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt                   <  1:14120771/35‑1 (MQ=255)
                  gCGTGGCGGCATTGCGGGTAAAAAAACGTGGCATa                  >  1:17079689/1‑35 (MQ=255)
                   cGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa                 <  1:10321203/35‑1 (MQ=255)
                   cGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa                 <  1:406245/35‑1 (MQ=255)
                   cGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa                 <  1:14217990/35‑1 (MQ=255)
                    gTGGCGGCATGGCGGGTAAAAAAACGTGGCATaac                <  1:11272871/35‑1 (MQ=255)
                    gTGGCGGCATGGCGGGTAAAAAAAAGTGGCATaac                <  1:16231073/35‑1 (MQ=255)
                     tGGCGGCATGGCGGGTAAAAAAACGTGGCATaaca               <  1:3432013/35‑1 (MQ=255)
                     tGGCGGCATGGCGGGTAAAAAAACGTGGCATaaca               <  1:7047937/35‑1 (MQ=255)
                     tGGCGGCATGGCGGGTAAAAAAACGTGGCATaaca               <  1:184082/35‑1 (MQ=255)
                     tGGCGGCATGGCGGGTAAAAAAACGTGGCATaaca               <  1:14876902/35‑1 (MQ=255)
                      ggcggcATGGCGGGTAAAAAAACGTGGCATaacaa              <  1:2834708/35‑1 (MQ=255)
                      ggcggcATGGCGGGTAAAAAAACGTGGCATaacaa              <  1:5106298/35‑1 (MQ=255)
                      ggcggcATGGCGGGTAAAAAAACGTGGCATaacaa              <  1:10552433/35‑1 (MQ=255)
                      ggcggcATGGCGGGTAAAAAAACGTGGCAGaacaa              <  1:10448606/35‑1 (MQ=255)
                        cggcATGGCGGGTAAAAAAACGTGGCATaacaaac            <  1:19029158/35‑1 (MQ=255)
                        cggcATGGCGGGTAAAAAAACGTGGCATaacaaac            <  1:13394785/35‑1 (MQ=255)
                        cggcATGGCGGGTAAAAAAACGTGGCATaacaaac            <  1:16825308/35‑1 (MQ=255)
                        cggcATGGCGGGTAAAAAAACGTGGCATaacaaac            <  1:8269152/35‑1 (MQ=255)
                         ggcATGGCGGGTAAAAAAACGTGGCATaacaaaca           <  1:9187369/35‑1 (MQ=255)
                         ggcATGGCGGGTAAAAAAACGTGGCATaacaaaca           <  1:13798223/35‑1 (MQ=255)
                         ggcATGGCGGGTAAAAAAACGTGGCATaacaaaca           <  1:3574280/35‑1 (MQ=255)
                         ggcATGGCGGGTAAAAAAACGTGGCATaacaaaca           <  1:1415107/35‑1 (MQ=255)
                         ggcATGGCGGGGGAAAAAAAAAGGCATaaaaaaaa           >  1:1017363/1‑33 (MQ=0)
                          gcATGGCGGGTAAAAAAACGTGGCATAacaaacaa          <  1:8984156/35‑1 (MQ=255)
                          gcATGGCGGGTAAAAAAACGTGGCATAacaaacaa          <  1:12891961/35‑1 (MQ=255)
                           cATGGCGGGTAAAAAAACGTGGCATAACAaacaac         <  1:12638595/35‑1 (MQ=255)
                           cATGGCGGGTAAAAAAACGTGGCATAACAaacaac         <  1:18184653/35‑1 (MQ=255)
                           cATGGCGGGTAAAAAAACGTGGCATAACAaacaac         <  1:18688617/35‑1 (MQ=255)
                            aTGGCGGGTAAAAAAACGTGGCATAACAAACAACt        <  1:3848175/35‑1 (MQ=255)
                             tGGCGGGGAAAAAAACGTGGCATAACAAACAACTc       >  1:18339040/1‑35 (MQ=255)
                             tGGCGGGGAAAAAAACGTGGCATAACAAACAACTc       >  1:4466854/1‑35 (MQ=255)
                               gCGGGTAAAAAAACGTGGCATAACAAACAACTCCt     <  1:3474021/35‑1 (MQ=255)
                               gCGGGTAAAAAAACGTGGCATAACAAACAACTCCt     <  1:20178901/35‑1 (MQ=255)
                               gCGGGTAAAAAAACGTGGCATAACAAACAACTCCt     <  1:18104522/35‑1 (MQ=255)
                                cGGGTAAAAAAACGTGGCATAACAAACAACTCCtt    <  1:16807092/35‑1 (MQ=255)
                                cGGGTAAAAAAACGTGGCATAACAAACAACTCCtt    <  1:9141140/35‑1 (MQ=255)
                                cGGGTAAAAAAACGTGGCATAACAAACAACTCCtt    <  1:11971328/35‑1 (MQ=255)
                                cGGGTAAAAAAACGTGGCATAACAAACAACTCCtt    >  1:1174017/1‑35 (MQ=255)
                                cGGGTAAAAAAACGTGGCATAACAAACAACTCCtt    <  1:11345486/35‑1 (MQ=255)
                                  gggTAAAAAAACGTGGCATAACAAACAACTCCTTg   >  1:4877632/1‑35 (MQ=255)
                                  gggTAAAAAAACGTGGCATAACAAACAACTCCTTg   <  1:15014439/35‑1 (MQ=255)
                                  gggTAAAAAAACGTGGCATAACAAACAACTCCTTg   >  1:7123731/1‑35 (MQ=255)
                                  gggTAAAAAAACGTGGCATAACAAACAACTCCTTg   >  1:9182465/1‑35 (MQ=255)
                                   ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt  >  1:16279752/1‑35 (MQ=255)
                                   ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt  <  1:14627224/35‑1 (MQ=255)
                                   ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt  <  1:18194507/35‑1 (MQ=255)
                                   ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt  >  1:19890876/1‑35 (MQ=255)
                                   ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt  >  1:12121113/1‑35 (MQ=255)
                                   ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt  <  1:11408076/35‑1 (MQ=255)
                                   ggTAAAAAAACGTGGCATAACAAACAACTCCTTGt  <  1:19865972/35‑1 (MQ=255)
                                   |                                  
ACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT  >  REL606/4549382‑4549450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.