New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 456653 =60 (0.580)11 (0.140) 4/36 NT 17.7% coding (1034/1194 nt) acrA multidrug efflux system
?REL606 3845122 = 57 (0.740)coding (269/360 nt) rnpA ribonuclease P

TGGAAACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/456692‑456653
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgaAAAAAGGGGTTGCCGACCTCGATAACCGTGCTCT  >  REL606/3845122‑3845155
                                                                          
gGGAAACCCGTCCGATCGTTGAAAGCCAGGCTATT                                         <  1:4692219/34‑1
TGGAACCCCGTCCGATCGTTGCAAGCCAGGCTATT                                         <  1:10231601/35‑1
TGGAACCCCGTCCGATCGTTGCAAGCCAGGCTATT                                         <  1:1597245/35‑1
TGGAAACCCGTCCGATCGTTGCAAGCCAGGCTATT                                         >  1:323374/1‑35
TGGAAACCCGTCCGATCGTTGCAAGCAAGGCTATT                                         <  1:3084882/35‑1
 GGAACCCCGTCCGATCGTTGCAAGCCAGGCTATTG                                        <  1:13680123/35‑1
 GGAAACCCGTCCGATCGTTGCAAGCCAGGCTATTG                                        <  1:18399659/35‑1
 GGAAACCCGTCCGATCGTTGCAAGCCAGGCTATTG                                        <  1:1846430/35‑1
 GGAAACCCGTCCGATCGTTGCAAGCCAGGCTATTG                                        >  1:15639756/1‑35
 GGAAACCCGTCCGATCGTTGCAAGCCAGGCTATTG                                        <  1:3416863/35‑1
  GAACCCCGTCCGATCGTTGCAAGCCAGGCTATTGG                                       <  1:17428466/35‑1
  GAACCCCGTCCGATCGTTGCAAGCCAGGCTATTGG                                       <  1:6342157/35‑1
  GAAACCCGTCCGATCGTTGCAAGCCAGGCTATTGG                                       >  1:18953630/1‑35
  GAAACCCGTCCGATCGTTGCAAGCCAGGCTATTGG                                       >  1:14700302/1‑35
  GAAACCCGTCAGATCGTTGCAAGCCAGGCTATTGG                                       <  1:2415602/35‑1
   AAACCCGTCCGATCGTTGCAAGCCAGGCTATTGGC                                      >  1:4270950/1‑35
   AAACCCGTCCGATCGTTGCAAGCCAGGCTATTGGC                                      >  1:12768289/1‑35
   AAACCCGTCCGATCGTTGCAAGCCAGGCTATTGGC                                      <  1:13932719/35‑1
    AACCCGTCCGATCGTTGCACGCCAGGCTATTGGCG                                     >  1:4481989/1‑35
    AACCCGTCCGATCGTTGCAAGCCAGGCTATTGGgg                                     >  1:3640080/1‑33
    AACCCGTCCGATCGTTGCAAGCCAGGCTATTGGgg                                     >  1:6873561/1‑33
    AACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCG                                     <  1:12881497/35‑1
    AACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCG                                     >  1:7039152/1‑35
     tCCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA                                    <  1:8286418/34‑1
     ACCCGTCCGATCGTTGCAAGCCAGGCTATTGGGGA                                    >  1:9227888/1‑35
     ACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA                                    <  1:9495655/35‑1
     ACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA                                    >  1:16009544/1‑35
     ACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA                                    >  1:11630806/1‑35
     ACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA                                    <  1:18954949/35‑1
      CCCGTCCGATCGTTGCAAGCCAGGCTATTGGGGAA                                   >  1:4517363/1‑35
      CCCGTCCGATCGTTGCAAGCCAGGCTATTGGGGAA                                   >  1:11506053/1‑35
         GTCCGATCGTTGCAAGCCAGGCTATTGGGGAAAAA                                >  1:1946563/1‑35
         GTCCGATCGTTGCAAGCCAGGCTATTGGGGAAAAA                                >  1:1425021/1‑35
         GTCCGATCGTTGCAAGCCAGGCTATTGGCGAAAAA                                >  1:573503/1‑35
          TCCGATCGTTGCAAGCCAGGCTATTGGGGAAAAAg                               >  1:10555442/1‑34
          TCCGATCGTTGCAAGCCAGGCTATTGGGGAAAAAA                               >  1:16859102/1‑35
          TCCGATCGTTGCAAGCCAGGCTATTGGCGAAAAga                               >  1:17390382/1‑33
           CCGATCGTTGCAAGCCAGGCTATTGGCGGAAAAAG                              >  1:15457069/1‑35
            CGATCGTTGCAAGCCAGGCTATTGGCGAAAAAAGG                             >  1:9632917/1‑35
            CGATCGTTGCAAGCCAGGCTATTGGCGAAAAAAGG                             >  1:18480873/1‑35
            CGATCGTTGCAAGCCAGGCTATTGGCGAAAAAAGG                             >  1:14630597/1‑35
             GATCGTTGCAAGCCAGGCTATTGGCGAAAAATGGG                            >  1:14891799/1‑35
             GATCGTTGCAAGCCAGGCTATTGGCGAAAAAAGGG                            >  1:9328705/1‑35
             GATCGTTGCAAGCCAGGCTATTGGCGAAAAAAGGG                            >  1:8251926/1‑35
              ATCGTTTCAAGCCAGGCTATTGGCGAAAAAAGGGt                           >  1:8543281/1‑34
              ATCGTTGCAAGCCAGGCTATTGGCGGAAAAAGGGG                           >  1:1002709/1‑35
              ATCGTTGCAAGCCAGGCTATTGGCGAAAAAAGGGG                           >  1:20595424/1‑35
                CGTTGCAAGCCAGGCTATTGGCGAAAAAAGGGGgg                         >  1:4000148/1‑33
                                  TGGCGAAAAAAGGGGTTGCCGACCTCGATAACCGT       >  1:6811869/1‑35
                                   GGCGAAAAAAGGGGTTGCCGCCCTCGATAACCGTG      <  1:7465864/35‑1
                                   GGCGAAAAAAGGGGTTGCCGACCTCGATAACCGTG      >  1:5555636/1‑35
                                    GCGAAAAAAGGGGTTGCCGACCTCGATAACCGTGC     >  1:1598080/1‑35
                                    GCGAAAAAAGGGGTTGCCGACCTCGATAACCGTGC     >  1:8066372/1‑35
                                    GCGAAAAAAGGGGTTGCCGAACTCGATAACCGTGC     >  1:13627546/1‑35
                                     CGAAAAAAGGGGTTGCCGCCCTCGATAACCGTGCT    <  1:3385861/35‑1
                                     CGAAAAAAGGGGTTGCCGACCTCGATAACCGTGCT    <  1:15440595/35‑1
                                     CGAAAAAAGGGGTTGCCGACCTCGATAACCGTGCT    <  1:12014012/35‑1
                                     CGAAAAAAGGGGTTGCCGACCTCGATAACCGTGCT    >  1:10201307/1‑35
                                      GAAAAAAGGGGTTGCCGACCTCGATAACCGTGCTC   >  1:7533916/1‑35
                                      GAAAAAAGGGGTTGCCGACCTCGATAACCGTGCTC   >  1:13851609/1‑35
                                      GAAAAAAGGGGTTGCCGACCTCGATAACCGTGCTC   >  1:13444289/1‑35
                                      GAAAAAAGGGGTTGCCGACCTCGATAACCGTGCTC   >  1:2616233/1‑35
                                       AAAAAAGGGGTTGCCGACCTCGATAACCGTGCTCT  >  1:7328156/1‑35
                                       AAAAAAGGGGTTGCCGACCTCGATAACCGTGCTCT  >  1:13678828/1‑35
                                       AAAAAAGGGGTTGCCGACCTCGATAACCGTGCTCT  <  1:6654269/35‑1
                                                                          
TGGAAACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/456692‑456653
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgaAAAAAGGGGTTGCCGACCTCGATAACCGTGCTCT  >  REL606/3845122‑3845155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.