New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 219734985 (0.830)22 (0.240) 7/42 NT 18.7% coding (659/1992 nt) cirA ferric iron‑catecholate outer membrane transporter
?REL606 3882314 = 133 (1.290)coding (104/816 nt) atpB F0F1 ATP synthase subunit A

Only 100 of 233 total aligned reads displayed.

CATGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGA  >  REL606/3882280‑3882341
                                  |                           
tcaatacgcggcgtttctccggtatcggtgggggg                             >  1:118386‑M2/35‑35 (MQ=255)
ggtcaagtacatcgtaacggaaggtggtGTGGCTg                             >  1:13374338‑M2/29‑35 (MQ=255)
ggtcaagtacatcgtaacggaaggtggtGTGGCTg                             >  1:9312470‑M2/29‑35 (MQ=255)
ggtcaagtacatcgtaacggaaggtggtGTGGCTg                             <  1:19219862‑M2/7‑1 (MQ=255)
ggtcaagtacatcgtaacggaaggtggtGTGGCTg                             <  1:3090526‑M2/7‑1 (MQ=255)
ggtcaagtacatcgtaacggaaggtggtGTGGCTg                             <  1:7123723‑M2/7‑1 (MQ=255)
ggtcaagtacatcgtaacggaaggtggtGTGGCTg                             >  1:6300351‑M2/29‑35 (MQ=255)
ggtcaagtacatcgtaacggaaggtggtGTGGCTg                             >  1:5393445‑M2/29‑35 (MQ=255)
ggtcaagtacatcgtaacggaaggtgggGTGGCTg                             >  1:17107957‑M2/29‑35 (MQ=255)
cATGGAGTCAATATTGATTGTCCAGAAGGTGGCTg                             <  1:10915671/35‑1 (MQ=255)
cATGGAGTCAATATTGATTGTCCAGAAGGTGGCTg                             >  1:18775243/1‑35 (MQ=255)
cATGGAGTCAATATTGATTGTCCAGAAGGTGGCTg                             >  1:17367808/1‑35 (MQ=255)
 gtcaagtacatcgtaacggaaggtggtGTGGCTgg                            >  1:4593393‑M2/28‑35 (MQ=255)
 gtcaagtacatcgtaacggaaggtggtGTGGCTgg                            >  1:8285691‑M2/28‑35 (MQ=255)
 gtcaagtacatcgtaacggaaggtggtGTGGCTgg                            >  1:1472270‑M2/28‑35 (MQ=255)
 gtcaagtacatcgtaacggaagggggtGTGGCTgg                            >  1:7623930‑M2/28‑35 (MQ=255)
 aTGGAGTCAATATTGATTGTCCAGAAGGTGGCTgg                            <  1:18828957/35‑1 (MQ=255)
  tcaagtacatcgtaacggaaggtggtGTGGCTggg                           >  1:18230103‑M2/27‑35 (MQ=255)
  tcaagtacatcgtaacggaaggtggtGTGGCTggg                           >  1:10045598‑M2/27‑35 (MQ=255)
  tGGAGTCAATATTGATTGTCCAGAAGGTGGCTggg                           <  1:13126627/35‑1 (MQ=255)
  aatacgcggcgtttctccggtatcggtgggggggg                           >  1:9582294‑M2/33‑35 (MQ=255)
   ggAGTCAATATTGATTGTCCAGAAGGTGGCTgggg                          <  1:9128284/35‑1 (MQ=255)
   caagtacatcgtaacggaaggtggtGTGGCTgggg                          >  1:20253491‑M2/26‑35 (MQ=255)
   atacgcggcgtttctccggtatcggtggggggggg                          >  1:15071939‑M2/32‑35 (MQ=255)
    tacgcggcgtttctccggtatcggtggggggtggg                         >  1:6029570‑M2/31‑35 (MQ=255)
    tacgcggcgtttctccggtatcggtgggggggggg                         >  1:18592978‑M2/31‑35 (MQ=255)
    tacgcggcgtttctccggtatcggtgggggggggg                         >  1:5863021‑M2/31‑35 (MQ=255)
    nagtacatcgtaacggaaggtggtGTGGCTggggg                         >  1:7142801‑M2/25‑35 (MQ=255)
    gAGTCAATATTGATTGTCCAGAAGGTGGCTggggg                         <  1:3795579/35‑1 (MQ=255)
     acgcggcgtttctccggtatcggtggggggtgggg                        >  1:4975451‑M2/30‑35 (MQ=255)
     acgcggcgtttctccggtatcggtgggcggggggg                        >  1:15505449‑M2/30‑35 (MQ=255)
     aGTCAATATTGATTGTCCAGAAGGTGGCTgggggg                        >  1:20128186/1‑35 (MQ=255)
      gTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGt                       <  1:9368952/35‑1 (MQ=255)
      cgcggcgtttctccggtatcggtgggggGGGGGGt                       >  1:16468133‑M2/29‑35 (MQ=255)
      cgcggcgtttctccggtatcggtgggggGGGGGGt                       >  1:15205155‑M2/29‑35 (MQ=255)
       tCAATATTGATTGTCCAGAAGGTGGCTGGGGGGtt                      <  1:11948554/35‑1 (MQ=255)
       tCAATATTGATTGTCAAGAAGGTGGCTGGGGGGtt                      <  1:3052333/35‑1 (MQ=255)
        cggcgtttctccggtatcggtgggggGGGGGGttt                     >  1:16810126‑M2/27‑35 (MQ=255)
        cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt                     >  1:16192227/1‑35 (MQ=255)
        cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt                     <  1:4240004/35‑1 (MQ=255)
        cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt                     >  1:3398052/1‑35 (MQ=255)
         ggcgtttctccggtatcggtgggggGGGGGGtttt                    >  1:18246582‑M2/26‑35 (MQ=255)
         ggcgtttctccggtatcggtgggggGGGGGGgttt                    >  1:5101918‑M2/26‑35 (MQ=255)
         catcgtaacggaaggtggtGTGGCTGGGGGGtttt                    >  1:10527128‑M2/20‑35 (MQ=255)
         aaTATTGATTGTCCAGAAGGTGGCTGGGGGGtttt                    <  1:20365660/35‑1 (MQ=255)
         aaTATTGATTGTCCAGAAGGTGGCTGGGGGGgttt                    >  1:15888794/1‑35 (MQ=255)
          atcgtaacggaaggtggtGTGGCTGGGGggtttgc                   >  1:2770516‑M2/19‑33 (MQ=255)
          atcgtaacggaaggtggtGTGGCTGGGGGgttttt                   >  1:11621332‑M2/19‑34 (MQ=255)
          atatTGATTGTCCAGAAGGTGGCTGGGGGGTTTtg                   >  1:17972687/1‑35 (MQ=255)
           tcgtaacggaaggtggtGTGGCTGGGgggtttcct                  >  1:14786191‑M2/18‑32 (MQ=255)
           tatTGATTGTCCAGAAGGTGGCTGGGGGGTTTtgt                  >  1:10906528/1‑35 (MQ=255)
           tatTGATTGTCCAGAAGGTGGCTGGGGGGTTTtgt                  <  1:19717765/35‑1 (MQ=255)
           cgtttctccggtatcggtgggggGGGGggtttttt                  >  1:8144090‑M2/24‑33 (MQ=255)
            cgtaacggaaggtggtGTGGCTGGGgggttttctc                 >  1:5078033‑M2/17‑32 (MQ=255)
            attgattgTCCAGAAGGTGGCTGGGGGGTTTtttg                 >  1:6384691/1‑35 (MQ=255)
            attgattgTCCAGAAGGTGGCTGGGGGGTTTtgtg                 <  1:12124966/35‑1 (MQ=255)
             ttgattgTCCAGAAGGTGGCTGGGGGGTTTTGTgg                >  1:6308633/1‑35 (MQ=255)
             ttgattgTCCAGAAGGTGGCTGGGGGGTTTTGTgg                <  1:10862982/35‑1 (MQ=255)
             ttgattgTCCAGAAGGTGGCTGGGGGGTTTTGTgg                <  1:10665631/35‑1 (MQ=255)
             gtaacggaaggtggtGTGGCTGGGGGGTTTTCTgg                >  1:14750057‑M2/16‑35 (MQ=255)
             gtaacggaaggtggtGTGGCTGGGGGGTTTTCTgg                >  1:12876851‑M2/16‑35 (MQ=255)
              tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa               >  1:1112173/1‑35 (MQ=255)
              tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa               <  1:8860575/35‑1 (MQ=255)
              tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa               >  1:4370567/1‑35 (MQ=255)
              tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa               >  1:3739294/1‑35 (MQ=255)
               gattgTCTAGAAGGTGGCTGGGGGGTTTTGTGGAt              >  1:5196176/1‑35 (MQ=255)
               gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt              >  1:14999282/1‑35 (MQ=255)
               gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt              <  1:19692452/35‑1 (MQ=255)
               gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt              <  1:14103692/35‑1 (MQ=255)
               gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt              >  1:2956472/1‑35 (MQ=255)
                attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc             <  1:1912301/35‑1 (MQ=255)
                attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc             >  1:2848872/1‑35 (MQ=255)
                agtgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc             <  1:17683398/33‑1 (MQ=255)
                  tgTCCAGAAGGTGGCTGGGGGGTTTTTTGGATcca           >  1:8362869/1‑35 (MQ=255)
                  tgTCCAGAAGGTGGCTGGGGGGTTTTTTGGATcca           >  1:12407181/1‑35 (MQ=255)
                  tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca           <  1:19432875/35‑1 (MQ=255)
                  tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca           >  1:2686327/1‑35 (MQ=255)
                  tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca           <  1:2606678/35‑1 (MQ=255)
                   gTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccac          <  1:8655697/35‑1 (MQ=255)
                   gTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccac          >  1:11520548/1‑35 (MQ=255)
                    tCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc         >  1:17278962/1‑35 (MQ=255)
                     ccAGAAGGTGGCTGGGGGGTTTTGTGGATccacca        >  1:15653859/1‑35 (MQ=255)
                     ccAGAAGGTGGCTGGGGGGTTTTGTGGATccacca        >  1:13871952/1‑35 (MQ=255)
                      cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg       >  1:2211603/1‑35 (MQ=255)
                      cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg       >  1:5420983/1‑35 (MQ=255)
                      cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg       <  1:19957150/35‑1 (MQ=255)
                      cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg       >  1:685038/1‑35 (MQ=255)
                      cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg       <  1:17487263/35‑1 (MQ=255)
                      cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg       <  1:18331882/35‑1 (MQ=255)
                       aGAAGGTGGCTGGGGGGTTTTGTGGATCCCACAGc      >  1:1615090/1‑35 (MQ=255)
                       aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc      >  1:11329587/1‑35 (MQ=255)
                       aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc      >  1:4032998/1‑35 (MQ=255)
                       aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc      <  1:15485056/35‑1 (MQ=255)
                        gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg     <  1:2111999/35‑1 (MQ=255)
                        gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg     <  1:223505/35‑1 (MQ=255)
                        gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg     <  1:7750497/35‑1 (MQ=255)
                         aaGGTGGCTGGGGGGTTTTTTGGATCCACCAGCga    >  1:16587389/1‑35 (MQ=255)
                         aaGGTGGCTGGGGGGTTTTGTGGATCCACCAGCga    >  1:5498365/1‑35 (MQ=255)
                          aGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgag   >  1:8463191/1‑35 (MQ=255)
                          aGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgag   >  1:3259754/1‑35 (MQ=255)
                                  |                           
CATGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGA  >  REL606/3882280‑3882341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.