New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1947885 = | 81 (0.790) | 20 (0.200) | 9/46 | NT | 16.6% | coding (250/861 nt) | cheR | chemotaxis regulator, protein‑glutamate methyltransferase |
? | REL606 | = 3428485 | 123 (1.250) | coding (671/1338 nt) | yhfM | predicted fructoselysine transporter |
GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1947919‑1947885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGTTTTTAATTTCGCCGGTCATATAACAGATAG < REL606/3428485‑3428452 GCTGTAATCTAATCAGCACAGCGGTGAGTGGCAGG > 1:5986825/1‑35 GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG < 1:9956823/35‑1 GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG < 1:8707681/35‑1 GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG < 1:5617776/35‑1 GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG < 1:3522224/35‑1 GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG > 1:2955896/1‑35 GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG > 1:2821985/1‑35 GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG < 1:18501733/35‑1 GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG < 1:12208597/35‑1 CTGGAATCTAATCAGCACAGCGGTGAGTGGCAGGG > 1:7575757/1‑35 CTGGAATCTAATCAGCACAGCGGTGAGTGGCAGGG > 1:10677923/1‑35 CTGGAATCTAATCAGCACAGCGGTGAGTGGCAGGG > 1:7904315/1‑35 TGGAATCTAATCAGCACATCGGTGAGTGGCAGGGG > 1:767713/1‑35 TGGAATCTAATCAGCACAGCGGTGAGTGGCAGGGG > 1:2870560/1‑35 TGGAATCTAATCAGCACAGCGGTGAGTGGCAGGGG > 1:7315372/1‑35 TGGAATCTAATCAGCACAGCGGTGAGTGGCAGGGG > 1:6788362/1‑35 TGGAATCTAATCAGCACAGCGGTGAGTGGCAGGGG > 1:8926115/1‑35 TGGAATCTAATCAGCACAGCGGTGAGTGGCAGGGG > 1:8954067/1‑35 GGAATCTAATCAGCACAGCGGTGAGTGGCAGGGGG > 1:12033896/1‑35 GAATCTAATCAGCACAGCGGTGAGTGGCAGGGGGg > 1:16928297/1‑34 GAATCTAATCAGCACAGCGGTGAGTGGCAGGGGGg > 1:1560105/1‑34 GAATCTAATCAGCACAGCGGTGAGTGGCAGGGGGg > 1:7248720/1‑34 GAATCTAATCAGCACAGCGGTGAGTGGCAGGGGGT > 1:14706172/1‑35 AATCTAATCAGCACAGCGGTGAGTGGCAGGGGGTT > 1:19479692/1‑35 ATCTAATCAGCACAGCGGTGAGTGGCAGGGGGTTT > 1:6734410/1‑35 ATCTAATCAGCACAGCGGTGAGTGGCAGGGGGTTT > 1:2645251/1‑35 TCTAATCAGCACAGCGGTGAGTGGCAGGGGGTTTT > 1:12051689/1‑35 TCTAATCAGCACAGCGGTGAGTGGCAGGGGGTTTT > 1:17712842/1‑35 TCTAATCAGCACAGCGGTGAGTGGCAGGGGGGTTT > 1:10404092/1‑35 CTAATCAGCACAGCGGTGAGTGGCAGGGGGTTTTT > 1:15671262/1‑35 CTAATCAGCACAGCGGTGAGTGGCAGGGGGTTTTT > 1:18360434/1‑35 CTAATCAGCACAGCGGTGAGTGGCAGGGGGTTTTT > 1:4073277/1‑35 CTAATCAGCACAGCGGTGAGTGGCAGGGGGTTTTT > 1:519778/1‑35 CTAATCAGCACAGCGGTGAGTGGCAGGGGGGTTTc > 1:16778402/1‑34 TAATCAGCACAGCGGTGAGTGGCAGGGGGTTTTca > 1:20102563/1‑33 TAATCAGCACAGCGGTGAGTGGCAGGGGGTTTTTA > 1:1249118/1‑35 AATCAGCACAGCGGTGAGTGGCAGGGGGTTTTTAA > 1:11470814/1‑35 ATCAGCACAGCGGTGAGTGGCAGGGGGTTTTTTAT > 1:946725/1‑35 ATCAGCACAGCGGTGAGTGGCAGGGGGTTTTTAAT > 1:8924742/1‑35 TCAGCACAGCGGTGAGTGGCAGGGGGTTTTTAATT > 1:519394/1‑35 CAGCACAGCGGTGAGTGGCAGGGGGTTTTTAAATT > 1:11440828/1‑35 CAGCACAGCGGTGAGTGGCAGGGGGTTTTCAATTT > 1:2226259/1‑35 AGCACATCGGTGAGTGGCAGGGGGTTTTTAATTTC > 1:5549378/1‑35 ACAGCGGTGAGTGGCAGGGGGTTTTTAAATTCGCg > 1:1277004/1‑34 GGGGTTTTTAATTTCGCCGGTCATATAACAGATAG > 1:16928432/1‑35 GGGGTTTTTAATTTCGCCGGTCATATAACAGATAG > 1:8780262/1‑35 GGGGTTTTTAATTTCGCCGGTCATATAACAGATAG > 1:14709684/1‑35 GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1947919‑1947885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGTTTTTAATTTCGCCGGTCATATAACAGATAG < REL606/3428485‑3428452 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |