New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 255937 =63 (0.610)13 (0.150) 7/40 NT 22.5% coding (477/1056 nt) dinB DNA polymerase IV
?REL606 3367494 = 37 (0.430)intergenic (‑80/+27) yhdN/rplQ hypothetical protein/50S ribosomal protein L17

AGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCT  >  REL606/3367460‑3367527
                                  |                                 
cggaacttctgccggcgtaatcacaaactggccgg                                   >  1:16614247‑M2/35‑35 (MQ=255)
cggaacttctgccggcgtaatcacaaactggccgg                                   >  1:17883301‑M2/35‑35 (MQ=255)
cggaacttctgccggcgtaatcacaaactggccgg                                   >  1:4217360‑M2/35‑35 (MQ=255)
cggaacttctgccggcgtaatcacaaactggccgg                                   >  1:7405450‑M2/35‑35 (MQ=255)
aGTGGGGATACTACGGGTATAAAAAAACCCGCCgg                                   <  1:18654423/35‑1 (MQ=255)
 ggaacttctgccggcgtaatcacaaactggccggg                                  >  1:15709084‑M2/34‑35 (MQ=255)
 ggaacttctgccggcgtaatcacaaactggccggg                                  >  1:8084689‑M2/34‑35 (MQ=255)
 ggaacttctgccggcgtaatcacaaactggccggg                                  >  1:17411677‑M2/34‑35 (MQ=255)
 gTGGGGATACTACGGGTATAAAAAAACCCGCCggg                                  >  1:10863586/1‑35 (MQ=255)
  tGGGGATACTACGGGTATAAAAAAAACCGCCgggg                                 >  1:6538310/1‑35 (MQ=255)
  gaacttctgccggcgtaatcacaaactggccgggg                                 >  1:6814676‑M2/33‑35 (MQ=255)
  gaacttctgccggcgtaatcacaaactggccgggg                                 >  1:10954597‑M2/33‑35 (MQ=255)
   aacttctgccggcgtaatcacaaactggccggggg                                >  1:18597655‑M2/32‑34 (MQ=255)
   aacttctgccggcgtaatcacaaactggccggggg                                >  1:2002588‑M2/32‑34 (MQ=255)
   aacttctgccggcgtaatcacaaactggccggggg                                >  1:20245313‑M2/32‑34 (MQ=255)
   aacttctgccggcgtaatcacaaactggccggggg                                >  1:2748504‑M2/32‑34 (MQ=255)
    gggATACTACGGGTATAAAAAAACCCGCCGGGGCg                               <  1:3161170/35‑1 (MQ=255)
    gggATACTACGGGTAAAAAAAAACCCGCCgggggg                               >  1:898313/1‑33 (MQ=37)
    gggATACTACGGGTAAAAAAAAACCCGCCcggggg                               >  1:3826905/1‑33 (MQ=25)
    acttctgccggcgtaatcacaaactggccgggggg                               >  1:4569320‑M2/31‑33 (MQ=255)
    acttctgccggcgtaatcacaaactggccgggggg                               >  1:6705003‑M2/31‑33 (MQ=255)
    acttctgccggcgtaatcacaaactggccgggggg                               >  1:9933351‑M2/31‑33 (MQ=255)
    acttctgccggcgtaatcacaaactggccgggggg                               >  1:8065194‑M2/31‑33 (MQ=255)
    acttctgccggcgtaatcacaaactggccgggggg                               >  1:14009682‑M2/31‑33 (MQ=255)
     ggATACTACGGGTATAAAAAAACCCGCCGGGGCgg                              <  1:19827681/35‑1 (MQ=255)
     cttctgccggcgtaatcacaaactggccgGGGGgg                              >  1:7907057‑M2/30‑35 (MQ=255)
     cttctgccggcgtaatcacaaactggccgGGGGgg                              >  1:16182297‑M2/30‑35 (MQ=255)
      ttctgccggcgtaatcacaaactggccgGGGGggg                             >  1:2118317‑M2/29‑35 (MQ=255)
      ttctgccggcgtaatcacaaactggccgGGGGggg                             >  1:13294908‑M2/29‑35 (MQ=255)
      gATACTACGGGTATAAAAAAACCCCCCCGGGGggg                             >  1:211683/1‑35 (MQ=25)
       tctgccggcgtaatcacaaactggccgGGGggggg                            >  1:593729‑M2/28‑34 (MQ=255)
       tctgccggcgtaatcacaaactggccgGGGGGGGt                            >  1:2988450‑M2/28‑35 (MQ=255)
       tctgccggcgtaatcacaaactggccgGGGGGGGt                            >  1:6313059‑M2/28‑35 (MQ=255)
       tctgccggcgtaatcacaaactggccgGGGGGGGt                            >  1:7540865‑M2/28‑35 (MQ=255)
       aTACTACGGGTATAAAAAAACCCGCCGGGGCgggg                            >  1:9046209/1‑34 (MQ=255)
        tactacGGGTATAAAAAAACCCGCCGGGGCGGGtt                           <  1:5005597/35‑1 (MQ=255)
        tactacGGGTATAAAAAAACCCGCCGGGGCGGGtt                           <  1:19177530/35‑1 (MQ=255)
        ctgccggcgtaatcacaaactggccgGGGGGGgtg                           >  1:6650613‑M2/27‑34 (MQ=255)
        ctgccggcgtaatcacaaactggccgGGGGGGGtt                           >  1:13804474‑M2/27‑35 (MQ=255)
         actacGGGTATAAAAAAACCCGCCGGGGCGGGgtt                          >  1:15441159/1‑35 (MQ=255)
          gccggcgtaatcacaaactggccgGGGGGGGtttt                         >  1:11208643‑M2/25‑35 (MQ=255)
           tacGGGTATAAAAAAACGCGCCGGGGCGGGttttt                        <  1:11781420/35‑1 (MQ=255)
           tacGGGTATAAAAAAACCCGCCGGGGCGGGttttt                        <  1:13378554/35‑1 (MQ=255)
           tacGGGTAAAAAAAAAACCCCCGGGGGGGGttttt                        >  1:4568402/1‑35 (MQ=16)
            cggcgtaatcacaaactggccgGGGGGGGtttttt                       >  1:6717212‑M2/23‑35 (MQ=255)
            acGGGTATAAAAAAACCCGCCGGGGGGGGgttttt                       >  1:6358161/1‑35 (MQ=25)
            acGGGTATAAAAAAACCCGCCGGGGCGGGtttttt                       <  1:7374621/35‑1 (MQ=255)
            acGGGTATAAAAAAACCCGCCGGGGCGGGgttttt                       >  1:3112557/1‑35 (MQ=255)
            acGGGTATAAAAAAACCCGCCGGGGCGGGgttttt                       >  1:17022269/1‑35 (MQ=255)
             ggcgtaatcacaaactggccgGGGGGGGttttttt                      >  1:4005587‑M2/22‑35 (MQ=255)
             cGGGTATAAAAAAACCCGCCGGGGCGGGgtttttt                      >  1:10651758/1‑35 (MQ=255)
             cGGGTATAAAAAAACCCGCCGGGGCGGGgtttttt                      >  1:314636/1‑35 (MQ=255)
              gggTATAAAAAAACCCGCCGGGGCGGGGTTTTTTa                     >  1:7315117/1‑35 (MQ=255)
               ggTATAAAAAAACCCGCCGGGGCGGGTTTTTTTAc                    >  1:8628171/1‑35 (MQ=255)
               ggTATAAAAAAACCCGCCGGGGCGGGTTTTTTTAc                    <  1:8899459/35‑1 (MQ=255)
               ggTATAAAAAAACCCGCCGGGGCGGGTTTTTTTAc                    >  1:18675907/1‑35 (MQ=255)
               ggTATAAAAAAACACGCCGGGGCGGGTTTTTTTAc                    <  1:18042593/35‑1 (MQ=255)
                gTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACg                   <  1:5572708/35‑1 (MQ=255)
                gTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACg                   >  1:9016857/1‑35 (MQ=255)
                 tataAAAGAACCCGCCGGGGCGGGTTTTTTTACGt                  <  1:6196542/35‑1 (MQ=255)
                 tataAAAAAACCCGCCGGGGCGGGTTTTTTTACGt                  >  1:7132275/1‑35 (MQ=255)
                 tataAAAAAACCCGCCGGGGCGGGTTTTTTTACGt                  <  1:3833687/35‑1 (MQ=255)
                  ataAAAAACCCCGCCGGGGCGGGTTTTTTTACGtt                 <  1:3358393/35‑1 (MQ=255)
                  ataAAAAAACCCGCCGGGGCGGGTTTTTTTACGtt                 >  1:8937023/1‑35 (MQ=255)
                  ataAAAAAACCCGCCGGGGCGGGTTTTTTTACGtt                 <  1:8734640/35‑1 (MQ=255)
                  ataAAAAAACCCGCCGGGGCGGGTTTTTTTACGtt                 <  1:425574/35‑1 (MQ=255)
                  ataAAAAAACCCGCCGGGGCGGGTTTTATTACGtt                 <  1:4889178/35‑1 (MQ=255)
                   taAAAAACCCCGCCGGGGCGGGTTTTTTTACGTTg                <  1:11194588/35‑1 (MQ=255)
                   taAAAAAACCCGCCGGGGCGGGGTTTTTTACGTTg                >  1:732152/1‑35 (MQ=255)
                    aaaaaatCCCGCCGGGGCGGGTTTTTTTACGTTGc               <  1:17122352/35‑1 (MQ=255)
                    aaaaaaaCCCGCCGGGGCGGGTTTTTTTACGTTGc               >  1:4879953/1‑35 (MQ=255)
                     aaaaaaCCCGCCGGGGCGGGTTTTTTTACGTTGCt              >  1:12516316/1‑35 (MQ=255)
                        aaaCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCa           <  1:17323377/35‑1 (MQ=255)
                        aaaCCCGCAGGGGCGGGTTTTTTTACGTTGCTTCa           <  1:18670644/35‑1 (MQ=255)
                         accccGCCGGGGCGGGTTTTTTTACGTTGCTTCAg          <  1:1916813/33‑1 (MQ=255)
                         aaCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAg          <  1:6344858/35‑1 (MQ=255)
                         aaCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAg          <  1:3659019/35‑1 (MQ=255)
                          aCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGa         <  1:636426/35‑1 (MQ=255)
                          aCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGa         >  1:17371052/1‑35 (MQ=255)
                          aCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGa         <  1:19443003/35‑1 (MQ=255)
                           cccGCCGGGGCGGGTTTTTTTACGTTGCTTCAGAt        >  1:10318620/1‑35 (MQ=255)
                           cccGCCGGGGCGGGTTTTTTTACGTTGCTTCAGAt        <  1:17587176/35‑1 (MQ=255)
                           cccGCCGGGGCGGGTTTTTTTACGTTGCTTCAGAt        >  1:15468470/1‑35 (MQ=255)
                           cccGCCGGGGCGGGTTTTTTTACGTTGCTTCAGAt        >  1:232632/1‑35 (MQ=255)
                             cgccgGGGCGGGTTTTTTTACGTTGCTTCAGATTa      <  1:5443100/35‑1 (MQ=255)
                             cgccgGGGCGGGTTTTTTTACGTTGCTTCAGATTa      >  1:4327956/1‑35 (MQ=255)
                              gccgGGGCGGGTTTTTTTACGTTGCTTCAGATTAc     <  1:19595732‑M2/31‑1 (MQ=255)
                              gccgGGGCGGGTTTTTTTACGTTGCTTCAGATTAc     <  1:6218336‑M2/31‑1 (MQ=255)
                              gccgGGGCGGGTTTTTTTACGTTGCTTCAGATTAc     >  1:11914575‑M2/5‑35 (MQ=255)
                               ccgGGGCGGGTTTTTTTACGTTGCTTCAGATTAct    <  1:20176470‑M2/32‑1 (MQ=255)
                               ccgGGGCGGGTTTTTTTACGTTGCTTCAGATTAct    <  1:13568273‑M2/32‑1 (MQ=255)
                               ccgGGGCGGGTTTTTTTACGTTGCTTCAGATTAct    >  1:19636477‑M2/4‑35 (MQ=255)
                               ccgGGGCGGGTTTTTTTACGTTGCTTCAGATTAct    >  1:4052160‑M2/4‑35 (MQ=255)
                                cgGGGCGGGTTTTTTTACGTTGCTTCAGATTActc   <  1:10098887‑M2/33‑1 (MQ=255)
                                cgGGGCGGGGTTTTTTACGTTGCTTCAGATTActc   >  1:7259565‑M2/3‑35 (MQ=255)
                                cgGGGCGGGGTTTTTTACGTTGCTTCAGATTActc   >  1:5606228‑M2/3‑35 (MQ=255)
                                 gGGGCGGGTTTTTTTACGTTGCTTCAGATTActct  <  1:14759536‑M2/34‑1 (MQ=255)
                                 gGGGCGGGTTTTTTTACGTTGCTTCAGATTActct  <  1:17595087‑M2/34‑1 (MQ=255)
                                 gGGGCGGGTTTTTTTACGTTGCTTCAGATTActct  >  1:10278170‑M2/2‑35 (MQ=255)
                                 gGGGCGGGGTTTTTTACGTTGCTTCAGATTActct  >  1:2447313‑M2/2‑35 (MQ=255)
                                  |                                 
AGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCT  >  REL606/3367460‑3367527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.