New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 581288 = | 99 (0.960) | 12 (0.150) | 3/38 | NT | 17.1% | coding (1672/3144 nt) | cusA | copper/silver efflux system, membrane component |
? | REL606 | 1956195 = | 38 (0.470) | coding (420/579 nt) | flhC | DNA‑binding transcriptional dual regulator with FlhD |
Only 100 of 183 total aligned reads displayed.
GGTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAGATCAATGAAGGCGA > REL606/581254‑581322 | tggattactgcaactttccagctgcaactgctgcg < 1:3630984‑M1/1‑1 (MQ=255) ggTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTg > 1:17525579/1‑35 (MQ=255) ggTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTg < 1:17980925/35‑1 (MQ=255) ggTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTg < 1:1071831/35‑1 (MQ=255) ggTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTg > 1:4056959/1‑35 (MQ=255) ggTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTg < 1:14107447/35‑1 (MQ=255) ggattactgcaactttccagctgcaactgctgcgg < 1:6134207‑M1/2‑1 (MQ=255) gTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTgg < 1:2910443/35‑1 (MQ=255) tGCTGACGGTTCTCTGGCCGCTCAATAAAGTTGGc < 1:3870825/35‑1 (MQ=255) gattactgcaactttccagctgcaactgctgcggc < 1:11826965‑M1/3‑1 (MQ=255) attactgcaactttccagctgcaactgctgcggcg < 1:6041142‑M1/4‑1 (MQ=255) ttactgcaactttccagctgcaactgctgcggcgg < 1:4660255‑M1/5‑1 (MQ=255) cTGACGGTTCTCTGGCCGCTCCATAAAGTTGGCgg > 1:19217731/1‑35 (MQ=255) cTGACGGTTCTCTGGCCGCTCAATAAAGTTGGCgg < 1:12535701/35‑1 (MQ=255) tactgcaactttccagctgcaactgctgcGGCggg < 1:3458871‑M1/6‑1 (MQ=255) gACGGTTCTCTGGCCGCTCAATAAAGTTGGCgggg > 1:19578894/1‑35 (MQ=255) actgcaactttccagctgcaactgctgcGGCgggg < 1:11704614‑M1/7‑1 (MQ=255) ctgcaactttccagctgcaactgctgcGgcgggca < 1:19759564‑M1/8‑3 (MQ=255) ctgcaactttccagctgcaactgctgcGGcggggc < 1:1283865‑M1/8‑2 (MQ=255) ctgcaactttccagctgcaactgctgcGGCGGGGa < 1:7749457‑M1/8‑1 (MQ=255) ctgcaactttccagctgcaactgctgcGGCGGGGa < 1:10801265‑M1/8‑1 (MQ=255) ctgcaactttccagctgcaactgctgcGGCGGGGa < 1:13559617‑M1/8‑1 (MQ=255) aCGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGa > 1:12106267/1‑35 (MQ=255) aCGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGa > 1:16497965/1‑35 (MQ=255) cGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGaa > 1:12659832/1‑35 (MQ=255) ggTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAAt < 1:13626765/35‑1 (MQ=255) ggTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAAt > 1:7050994/1‑35 (MQ=255) ggTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAAt < 1:5846299/35‑1 (MQ=255) gTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAAtt < 1:1406224/35‑1 (MQ=255) gTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAAtt < 1:2169799/35‑1 (MQ=255) caactttccagctgcaactgctgcGGCGgggattt < 1:16125289‑M1/11‑4 (MQ=255) ttCTCTGGCCGCTCAATAAAGTTGTCGGGGAAttt > 1:9914284/1‑35 (MQ=255) ttCTCTGGCCGCTCAATAAAGTTGGCGGGGAAttt > 1:18538905/1‑35 (MQ=255) ttCTCTGGCCGCTCAATAAAGTTGGCGGGGAAttt < 1:10867034/35‑1 (MQ=255) ttCTCTGGCCGCTCAATAAAGTTGGCGGGGAAttt > 1:16583248/1‑35 (MQ=255) tctcTGGCCGCTCAATAAAGTTGGCGGGGAAtttt > 1:3254181/1‑35 (MQ=255) tctcTGGCCGCTCAATAAAGTTGGCGGGGAAtttt > 1:12427541/1‑35 (MQ=255) tctcTGGCCGCTCAATAAAGTTGGCGGGGAAtttt < 1:14506909/35‑1 (MQ=255) ctttccagctgcaactgctgcGGCGGGGATttttt < 1:4444775‑M1/14‑1 (MQ=255) ctttccagctgcaactgctgcGGCGGGGAAttttt < 1:16950389‑M1/14‑1 (MQ=255) ctttccagctgcaactgctgcGGCGGGGAAttttt < 1:4189421‑M1/14‑1 (MQ=255) ctctGGCCGCTCAATAAAGTTGGCGGGGAAttttt < 1:16568944/35‑1 (MQ=255) ctctGGCCGCTCAATAAAGTTGGCGGGGAAttttt > 1:10549041/1‑35 (MQ=255) ctctGGCCGCTCAATAAAGTTGGCGGGGAAttttt < 1:3354774/35‑1 (MQ=255) ctctGGCCGCTCAATAAAGTTGGCGGGGAAttttt > 1:906891/1‑35 (MQ=255) tttccagctgcaactgctgcGGCGGGGAttttttt < 1:14808121‑M1/15‑2 (MQ=255) tctGGCCGCTCAATAAAGTTGGCGGGGAATTTTTa < 1:18630567/35‑1 (MQ=255) ctGGCCGCTCAATAAAGTTGGCGGGGAATTTTTAc > 1:1732259/1‑35 (MQ=255) ctGGCCGCTCAATAAAGTTGGCGGGGAATTTTTAc < 1:13380743/35‑1 (MQ=255) tccagctgcaactgctgcGGCGGGgaattttttta < 1:1682463‑M1/17‑4 (MQ=255) tGGCCGCTCAATAAAGTTGGCGGGGAATTTTTAcc > 1:13147171/1‑35 (MQ=255) tGGCCGCTCAATAAAGTTGGCGGGGAATTTTTAcc > 1:11331155/1‑35 (MQ=255) tGGCCGCTCAATAAAGTTGGCGGGGAATTTTTAcc < 1:6223803/35‑1 (MQ=255) tGGCCGCTCAATAAAGTTGGCGGGGAATTTTTAcc < 1:15931121/35‑1 (MQ=255) gCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGc > 1:4956710/1‑35 (MQ=255) gCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGc < 1:3832791/35‑1 (MQ=255) gCCGCTCAATAAAGTTGGCGGGGAACTTTTAccag > 1:2818344/1‑33 (MQ=38) ccGCTCAATAAAGTTGGCGGGGAATTTTTACCGCa < 1:12458118/35‑1 (MQ=255) ccGCTCAATAAAGTTGGCGGGGAATTTTTACCGCa < 1:983943/35‑1 (MQ=255) cGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAg < 1:15607659/35‑1 (MQ=255) cGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAg < 1:9325628/35‑1 (MQ=255) gCTCAATAAAGTTGGCGGGGAATTTTTACCGCAGa > 1:7931679/1‑35 (MQ=255) cTCAATAAAGTTGGCGGGGAATTTTTACCGCAGAt > 1:10316850/1‑35 (MQ=255) tCAATAAAGTTGGCGGGGAATTTTTACCGCAGATc > 1:15609080/1‑35 (MQ=255) tCAATAAAGTTGGCGGGGAATTTTTACCGCAGATc > 1:17149998/1‑35 (MQ=255) cAATAAAGTTGGCGGGGAATTTTTACCGCAGATCa > 1:6549805/1‑35 (MQ=255) cAATAAAGTTGGCGGGGAATTTTTACCGCAGATCa > 1:6605533/1‑35 (MQ=255) aaTAAAGTTGGCGGGTAATTTTTACCGCAGATCaa > 1:20091769/1‑35 (MQ=255) aaTAAAGTTGGCGGGGAATTTTTACCGCAGCTCaa > 1:195849/1‑35 (MQ=255) aaTAAAGTTGGCGGGGAATTTTTACCGCAGATCaa > 1:6259518/1‑35 (MQ=255) aaTAAAGTTGGCGGGGAATTTTTACCGCAGATCaa > 1:14760457/1‑35 (MQ=255) aaTAAAGTTGGCGGGGAATTTTTACCGCAGATCaa < 1:752033/35‑1 (MQ=255) aaTAAAGTTGGCGGGGAATTTTTACCGCAGATCaa < 1:3406573/35‑1 (MQ=255) aaTAAAGTTGGCGGGGAATTTTTACCGCAGATCaa < 1:2586782/35‑1 (MQ=255) aTAAAGTTGGCGGGGAATTTTTACCGCAGATCAAt < 1:5416339/35‑1 (MQ=255) aTAAAGTTGGCGGGGAATTTTTACCGCAGATCAAt > 1:2455134/1‑35 (MQ=255) aTAAAGTTGGCGGGGAATTTTTACCGCAGATCAAt < 1:12359202/35‑1 (MQ=255) tAAAGTTGGCGGGGAATTTTTACCGCAGATCAATg > 1:6314106/1‑35 (MQ=255) tAAAGTTGGCGGGGAATTTTTACCGCAGATCAATg < 1:11071294/35‑1 (MQ=255) aaaGTTGGCGGGGAATTTTTACCGCAGATCAATGa < 1:6429217/35‑1 (MQ=255) aaaGTTGGCGGGGAATTTTTACCGCAGATCAATGa < 1:5490572/35‑1 (MQ=255) aaGTTGGCGGGGAATTTTTACCGCAGATCAATGaa < 1:8179544/35‑1 (MQ=255) aaGTTGGCGGGGAATTTTTACCGCAGATCAATGaa > 1:892497/1‑35 (MQ=255) aaGTTGGCGGGGAATTTTTACCGCAGATCAATGaa < 1:10060016/35‑1 (MQ=255) aaGTTGGCGGGGAATTTTTACCGCAGATCAATGaa < 1:15294147/35‑1 (MQ=255) aaGTTGGCGGGGAATTTTTACCGCAGATCAATGaa < 1:17185860/35‑1 (MQ=255) aGTTGGCGGGGAATTTTTACCGCAGATCAATGAAg < 1:18561292/35‑1 (MQ=255) aGTTGGCGGGGAATTTTTACCGCAGATCAATGAAg > 1:19843762/1‑35 (MQ=255) aGTTGGCGGGGAATTTTTACCGCAGATCAATGAAg > 1:3484532/1‑35 (MQ=255) aGTTGGCGGGGAATTTTTACCGCAGATCAATGAAg < 1:4069637/35‑1 (MQ=255) gTTGGCGGGGGATTTTTACCGCAGATCAATTAAgg > 1:18860307/1‑35 (MQ=37) ttGGCGGGGAATTTTTACCGCAGATCAATGAAGGc < 1:18309519/35‑1 (MQ=255) ttGGCGGGGAATTTTTACCGCAGATCAATGAAGGc < 1:15780719/35‑1 (MQ=255) tGGCGGGGAATTTTTACCGCAGATCAATGAAGGCg < 1:17020286/35‑1 (MQ=255) tGGCGGGGAATTTTTACCGCAGATCAATGAAGGCg < 1:16686997/35‑1 (MQ=255) tGGCGGGGAATTTTTACCGCAGATCAATGAAGGCg < 1:8622456/35‑1 (MQ=255) tGGCGGGGAATTTTTACCGCAGATCAATGAAGGCg < 1:8852807/35‑1 (MQ=255) tGGCGGGGAATTTTTACCGCAGATCAATGAAGGCg > 1:13411436/1‑35 (MQ=255) ggCGGGGAATTTTTAACGCAGACCCATGAAGGCGa > 1:6734292/1‑35 (MQ=25) GGCGGGGAATTTTTACCGCAGATCAATGAAGGCGa > 1:1120311‑M1/1‑35 (MQ=255) | GGTGCTGACGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAGATCAATGAAGGCGA > REL606/581254‑581322 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |