New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3182813 =111 (1.080)7 (0.110) 3/30 NT 10.7% coding (97/405 nt) yqjE conserved inner membrane protein
?REL606 4217451 = 48 (0.750)coding (886/2097 nt) yjbH predicted porin

Only 100 of 144 total aligned reads displayed.

TAACGCCCGCCCGCAATATCAACCGCAGCCGCAGGATGCCATTTTGCAGCATTCGGTGGTGGCGAATCA  >  REL606/4217417‑4217485
                                  |                                  
tAACGCCCGCCAGCAATATCAACCGCAGCCGCAgg                                    >  1:899510/1‑35 (MQ=255)
 aaCGCCCGCCCGCAATATCAACCGCAGCCGCAGGa                                   >  1:492845/1‑35 (MQ=255)
  aCGCCCGCCCGCAATATCAACCGCAGCCGCAGGAt                                  >  1:7457642/1‑35 (MQ=255)
  aCGCCCGCCCGCAATATCAACCGCAGCCGCAGGAt                                  >  1:12584382/1‑35 (MQ=255)
  aCGCCCGCCCGCAATATCAACCGCAGCCGCAGGAt                                  >  1:12319755/1‑35 (MQ=255)
    gcccgcccGCAATATCAACCGCAGCCGCAGGATGc                                >  1:549055/1‑35 (MQ=255)
    gcccgcccGCAATATCAACCGCAGCCGCAGGATGc                                >  1:6256652/1‑35 (MQ=255)
    gcccgcccGCAATATCAACCGCAGCCGCAGGATGc                                >  1:922865/1‑35 (MQ=255)
    ccccccccaCAATATCACCCGCAGCCGCAGGATGc                                <  1:18149846/34‑1 (MQ=25)
     cccgcccgCAATATCAACCGCAGCCGCAGGATGcc                               >  1:10147479/1‑35 (MQ=255)
     cccccccgCAATACCACCCGCAGCCGCAGGATGcc                               <  1:19145899/35‑1 (MQ=18)
      ccgcccgcTATATCAACCGCAGCCGCAGGATGCCa                              >  1:17259842/1‑35 (MQ=255)
      ccgcccgcAATATCAACCGCAGCCGCAGGATGCCa                              >  1:17556023/1‑35 (MQ=255)
        gcccgcAATATCAACCGCAGCCGCAGGATGCCCtt                            >  1:164485/1‑35 (MQ=255)
        gcccgcAATATCAACCGCAGCCGCAGGATGCCAtt                            >  1:14716240/1‑35 (MQ=255)
        ccccgcAATATCAACCGCAGCCGCAGGATGTCAtt                            >  1:1788865/2‑35 (MQ=255)
         cccgcAATATCAACCGCAGCCGCAGGATGCCAttt                           >  1:1190467/1‑35 (MQ=255)
          ccgcAATATCAACCGCAGCCGCAGGATGCCAtttt                          >  1:8445234/1‑35 (MQ=255)
          ccgcAATATCAACCGCAGCCGCAGGATGCCAtttt                          >  1:13589321/1‑35 (MQ=255)
          ccgcAATATCAACCGCAGCCGCAGGATGCCAtttt                          >  1:14117143/1‑35 (MQ=255)
          ccgcAATACCACCCCCAGCCGCAGGGTGCCAtttt                          <  1:6347052/35‑1 (MQ=16)
           cgcAATATCAACCGCAGCCGCAGGATGCCATTTTg                         >  1:18980107/1‑35 (MQ=255)
           cgcAATATCAACCGCAGCCGCAGGATGCCATTTTg                         >  1:13729884/1‑35 (MQ=255)
           ccaaaTACCACCCGCAGCCGCAGGATGCCATTTTg                         <  1:16261657/32‑1 (MQ=18)
           cacAATACCACCCCCAGCCGCAGGATGCCATTTTg                         <  1:10143375/33‑1 (MQ=18)
            gcAATATCAACCGCAGCCGCAGGATGCCATTTTgc                        >  1:12163400/1‑35 (MQ=255)
            gcAATACCACCCGCAGCAGCAGGATGCCATTTTgc                        <  1:18904456/35‑1 (MQ=21)
            ccAATACCACCCCCAGCCGCAGGATGCCATTTTgc                        <  1:2885796/34‑1 (MQ=21)
             cAATATCAACCGCAGCCGCAGGATGCCCTTTTgca                       >  1:12738026/1‑35 (MQ=255)
             cAATATCAACCGCAGCCGCAGGATGCCATTTTgca                       >  1:9059519/1‑35 (MQ=255)
             cAATATCAACCGCAGCCGCAGGATGCCATTTTgca                       >  1:4910283/1‑35 (MQ=255)
             cAATACCACCCGCAGCCGCAGGATGCCATTTTgca                       <  1:17661039/35‑1 (MQ=21)
              aaTACCACCCGCAGCCGCAGGATGCCATTTTgaag                      <  1:10182118/35‑1 (MQ=18)
                tatCAACCGCAGCCGCAGGATGCCATTTTgcagca                    >  1:7058955/1‑35 (MQ=255)
                 atCAACCGCAGCCGCAGGATGCCATTTTGCAGCAt                   >  1:18845857/1‑35 (MQ=255)
                 atCAACCGCAGCCGCAGGATGCCATTTTGCAGCAt                   >  1:16609389/1‑35 (MQ=255)
                 accacccccagccgcagGATGCCATTTTGCAGCAt                   <  1:15620863‑M2/18‑1 (MQ=255)
                 accacccccagccgcagGATGCCATTTTGCAGCAt                   <  1:7869168‑M2/18‑1 (MQ=255)
                  tCAACCGCAGCCGCAGGATGCCCTTTTGCAGCAtt                  >  1:18641411/1‑35 (MQ=255)
                  tCAACCGCAGCCGCAGGATGCCATTTTGCAGCAtt                  >  1:515290/1‑35 (MQ=255)
                  ccacccccagccgcagGATGCCATTTTGCAGCAtt                  <  1:6813745‑M2/19‑1 (MQ=255)
                  ccacccccagccgcagGATGCCATTTTGCAGCAtt                  <  1:15772595‑M2/19‑1 (MQ=255)
                   cacccccagccgcagGATGCCATTTTGCAGCATTc                 <  1:14111346‑M2/20‑1 (MQ=255)
                   cAACCGCAGCCGCAGGATGCCATTTTGCAGCATTc                 >  1:15732635/1‑35 (MQ=255)
                    aaCCGCAGCCGCAGGATGCCATTTTGCAGCATTCg                >  1:9741082/1‑35 (MQ=255)
                    aaCCGCAGCCGCAGGATGCCATTTTGCAGCATTCg                >  1:20053817/1‑35 (MQ=255)
                    aaCCGCAGCCGCAGGATGCCATTTTGCAGCATTCg                >  1:17156371/1‑35 (MQ=255)
                    aaCCGCAGCCGCAGGATGCCATTTTGCAGCATTCg                >  1:1156879/1‑35 (MQ=255)
                    aaCCGCAGCCGCAGGATGCCATTTTGCAGCATTCg                >  1:15287312/1‑35 (MQ=255)
                    aaCCGCAGCCGCAGGATGCCATTTTGCAGCATTCg                >  1:12600944/1‑35 (MQ=255)
                    aaCCGCAGCCGCAGGATGCCATTTTGCAGCATTCg                >  1:12871188/1‑35 (MQ=255)
                    aaCCGAAGCCGCAGGATGCCATTTTGCAGCATTCg                <  1:5556656/35‑1 (MQ=255)
                     cccgcagccgcagGATGCCATTTTGCAGCATTCgg               <  1:11748350/34‑1 (MQ=255)
                     cccccagccgcagGATGCCATTTTGCAGCATTCgg               <  1:12304022‑M2/22‑1 (MQ=255)
                     aCCGCAGCCGCAGGATGCCATTTTGCAGCATTCgg               >  1:14729199/1‑35 (MQ=255)
                      ccgcagccgcagGATGCCATTTTGCAGCATTCggt              >  1:18387643/1‑35 (MQ=255)
                      ccgcagccgcagGATGCCATTTTGCAGCATTCggt              >  1:2527073/1‑35 (MQ=255)
                      ccgcagccgcagGATGCCATTTTGCAGCATTCggt              >  1:20365175/1‑35 (MQ=255)
                      ccgcagccgcagGATGCCACTTTGCAGCATTCggt              >  1:16372074/1‑35 (MQ=255)
                      ccccagccgcagGATGCCATTTTGCAGCATTCggt              <  1:16929797‑M2/23‑1 (MQ=255)
                      ccccagccgcagGATGCCATTTTGCAGCATTCggt              <  1:8258401‑M2/23‑1 (MQ=255)
                       cgcagccgcagGATGCCATTTTGCAGCATTCggtg             >  1:1039904/1‑35 (MQ=255)
                       cccagccgcagGATGCCATTTTGCAGCATTCggtg             <  1:15624186‑M2/24‑1 (MQ=255)
                       cccagccgcagGATGCCATTTTGCAGCATTCggtg             <  1:14814415‑M2/24‑1 (MQ=255)
                        gcagccgcagGATGCCATTTTGCAGCATTCggtgg            >  1:17053007/1‑35 (MQ=255)
                        gcagccgcagGATGCCATTTTGCAGCATTCggtgg            >  1:2560084/1‑35 (MQ=255)
                        gcagcagcagGATGCCATTTTGAAGCATTCggtgg            <  1:14531725/35‑1 (MQ=25)
                        ccagccgcagGATGCCATTTTGCAGCATTCggtgg            <  1:9519770‑M2/25‑1 (MQ=255)
                         cagccgcagGATGCCATTTTGCAGCATTcggtggg           >  1:4289825‑M2/10‑34 (MQ=255)
                         cagccgcagGATGCCATTTTGCAGCATTCggtggt           <  1:10772918‑M2/26‑1 (MQ=255)
                         cagccgcagGATGCCATTTTGCAGCATTCggtggt           >  1:12974149‑M2/10‑35 (MQ=255)
                          agccgcagGATGCCATTTTGCAGCATtcggtgggg          >  1:8984967‑M2/9‑33 (MQ=255)
                          agccgcagGATGCCATTTTGCAGCATtcggtgggg          >  1:2106277‑M2/9‑33 (MQ=255)
                          agccgcagGATGCCATTTTGCAGCATTCGgtggtg          <  1:14362088‑M2/27‑1 (MQ=255)
                           gccgcagGATGCCATTTTGCAGCATTCGGtggtgg         <  1:8767692‑M2/28‑1 (MQ=255)
                            ccgcagGATGCCATTTTGCAGCATTGGGTGGTGGc        <  1:5762364‑M2/29‑1 (MQ=255)
                            ccgcagGATGCCATTTTGCAGCATTCGGTGGTGGc        <  1:20008728‑M2/29‑1 (MQ=255)
                             tgcagGATGCCATTTTGCAGCATTCGGtggggggg       >  1:15595417/2‑33 (MQ=37)
                             cgcagGATGCCATTTTGCAGCATTCGGtggggggg       >  1:438283/1‑33 (MQ=38)
                             cgcagGATGCCATTTTGCAGCATTCGGTGGTGGCg       <  1:5356119‑M2/30‑1 (MQ=255)
                             cgcagGATGCCATTTTGCAGCATTCGGTGGTGGCg       >  1:7524933‑M2/6‑35 (MQ=255)
                             cgcagGATGCCATTTTGCAGCATTCGGTGGGGGCg       >  1:5110685‑M2/6‑35 (MQ=255)
                              gcagGATGCCATTTTGCAGCATTCGGtgggggggg      >  1:11020640/1‑32 (MQ=37)
                              gcagGATGCCATTTTGCAGCATTCGGtgggggggg      >  1:18573059/1‑32 (MQ=37)
                               catgATGCCATTTTGCAGCATTCGGTGGGGGGGaa     >  1:13482256/4‑35 (MQ=25)
                               cagGATGCCATTTTGCAGCATTCGTTGGTGGCGaa     >  1:8051516‑M2/4‑35 (MQ=255)
                               cagGATGCCATTTTGCAGCATTCGGTGGTGGCGaa     <  1:3646744‑M2/32‑1 (MQ=255)
                               cagGATGCCATTTTGCAGCATTCGGTGGTGGCGaa     <  1:13978718‑M2/32‑1 (MQ=255)
                                agGATGCCATTTTGCAGCATTCGGTGGTGGcgatt    <  1:20273890‑M2/33‑3 (MQ=255)
                                agGATGCCATTTTGCAGCATTCGGTGGTGGGGAAt    >  1:6138134‑M2/3‑35 (MQ=255)
                                agGATGCCATTTTGCAGCATTCGGTGGTGGCGAAt    <  1:12827251‑M2/33‑1 (MQ=255)
                                agGATGCCATTTTGCAGCATTCGGTGGTGGCGAAt    <  1:19647158‑M2/33‑1 (MQ=255)
                                agGATGCCATTTTGCAGCATTCGGTGGTGGCGAAt    <  1:14281202‑M2/33‑1 (MQ=255)
                                 gGATGCCATTTTGCAGCATTCGGTGGTGGCGAATc   <  1:3415044‑M2/34‑1 (MQ=255)
                                 gGATGCCATTTTGCAGCATTCGGTGGTGGCGAATc   <  1:16789438‑M2/34‑1 (MQ=255)
                                  gATGCCATTTTGCAGCATTCGGTGGTGGGGGATCa  >  1:2180801/1‑35 (MQ=37)
                                  gATGCCATTTTGCAGCATTCGGTGGTGGCGAATCa  <  1:578409/35‑1 (MQ=255)
                                  gATGCCATTTTGCAGCATTCGGTGGTGGCGAATCa  <  1:343057/35‑1 (MQ=255)
                                  gATGCCATTTTGCAGCATTCGGTGGTGGCGAATCa  <  1:13074566/35‑1 (MQ=255)
                                  gATGCCATTTTGCAGCATTCGGTGGGGGGGGATCa  >  1:384216/1‑35 (MQ=25)
                                  |                                  
TAACGCCCGCCCGCAATATCAACCGCAGCCGCAGGATGCCATTTTGCAGCATTCGGTGGTGGCGAATCA  >  REL606/4217417‑4217485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.