New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 283622259 (0.570)12 (0.120) 7/46 NT 15.4% coding (29/396 nt) ygdD conserved inner membrane protein
?REL606 = 4349299 75 (0.760)intergenic (‑166/‑110) yjeH/groES predicted transporter/co‑chaperonin GroES

Only 100 of 106 total aligned reads displayed.

GCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGGCGAAAATCAGCATAAAACGGCTGGTCATGGTCGT  >  REL606/2836188‑2836256
                                   |                                  
gCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGG                                    >  1:9735235‑M1/1‑35 (MQ=255)
gCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGG                                    >  1:15284786‑M1/1‑35 (MQ=255)
gCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGG                                    >  1:5374517‑M1/1‑35 (MQ=255)
gCCCAGAGCCACAAAAATGAAGCAGCTAATGGCGG                                    >  1:2562129‑M1/1‑35 (MQ=255)
 cccAGAGCCACAAAAATGAAGCCGCTAATGGCGGg                                   >  1:4006493‑M1/1‑34 (MQ=255)
 cccAGAGCCACAAAAATGAAGCCGCTAATGGCGGg                                   >  1:14687055‑M1/1‑34 (MQ=255)
  ccAGAGCCACAAAAATGAAGCCGCTAATGgcggcg                                  >  1:11249624/1‑35 (MQ=255)
  ccAGAGCCACAAAAATGAAGCCGCTAATGGCGGgg                                  >  1:2863657‑M1/1‑33 (MQ=255)
  ccAGAGCCACAAAAATGAAGCCGCTAATGGCGGgg                                  >  1:58400‑M1/1‑33 (MQ=255)
  ccAGAGCCACAAAAATGAAGCCGCTAATGGCGGgg                                  >  1:7193411‑M1/1‑33 (MQ=255)
   cAGAGCCACAAAAATGAAGCCGCTAATGgcggcgg                                 >  1:8201211/1‑34 (MQ=255)
   cAGAGCCACAAAAATGAAGCCGCTAATGGCGGggg                                 >  1:15319086‑M1/1‑32 (MQ=255)
   cAGAGCCACAAAAATGAAGCCGCTAATGGCGGggg                                 >  1:10496118‑M1/1‑32 (MQ=255)
   cAGAGCCACAAAAATGAAGCCGCTAATGGCGGCGa                                 >  1:17426790/1‑35 (MQ=255)
    agagCCACAAAAATGAAGCCGCTAATGGCGGggga                                >  1:8868909‑M1/1‑31 (MQ=255)
    agagCCACAAAAATGAAGCCGCTAATGGCGGggga                                >  1:14571760‑M1/1‑31 (MQ=255)
      agCCACAAAAATGAAGCCGCTAATGGCGGgggaaa                              >  1:1693075‑M1/1‑29 (MQ=255)
      agCCACAAAAATGAAGCAGCTAATGGCGGCGaaaa                              <  1:17875150/35‑1 (MQ=255)
      acccAAAAAAATAAAGCCGCTAATGGCGGCGaaaa                              <  1:4584944/33‑1 (MQ=21)
      acccAAAAAAATAAAGCCGCTAATGGCGGCGaaaa                              <  1:2818506/33‑1 (MQ=21)
       gCCACAAAAATGAAGCCGCTAATGGCGGggggaga                             >  1:7090406‑M1/1‑28 (MQ=255)
       gCCACAAAAATGAAGCCGCTAATGGCGGgggaaaa                             >  1:12384829‑M1/1‑28 (MQ=255)
        ccACAAAAATGAAGCCGCTAATGGCGGggggaaac                            >  1:10596405‑M1/1‑27 (MQ=255)
        ccACAAAAATGAAGCCGCTAATGGCGGggggaaaa                            >  1:8432535‑M1/1‑27 (MQ=255)
        ccACAAAAATGAAACCGCTAATGGCGGGGgaaacc                            >  1:206253/1‑33 (MQ=21)
        ccAAAAAAATAAAGCCGCTAATGGCGGCGAAAATc                            <  1:14704257/35‑1 (MQ=25)
        ccAAAAAAAAAAAGCCGCTAATGGCGGCGAAAATc                            <  1:13598808/35‑1 (MQ=21)
         cacaAAAATGAAGCCGCTAATGGCGGggggaaaca                           >  1:5534186‑M1/1‑26 (MQ=255)
         cacaAAAATGAAGCCGCTAATGGCGGgggaaaaaa                           >  1:13607276‑M1/1‑26 (MQ=255)
         cacaAAAATGAAGCCGCTAATGGCGGgggaaaaaa                           >  1:18774791‑M1/1‑26 (MQ=255)
         caaaaaaaAAAAGCCGCTAATGGCGGCGAAAATCa                           <  1:10315568/32‑1 (MQ=21)
         aaaaaaaaAAAAGCCGCTAATGGCGGCGAAAATCa                           <  1:1209100/32‑1 (MQ=21)
          aaaaaaaTAAAGCCGCTAATGGCGGCGAAAATCAg                          <  1:7362838/33‑1 (MQ=25)
          aaaaaaaGAAAGCCGCTAATGGCGGCGAAAATCAg                          <  1:12387172/33‑1 (MQ=25)
          aaaaaaaAAAAGCCGCTAATGGCGGCGAAAATCAg                          <  1:9726012/33‑1 (MQ=21)
           caAAAATGAAGCCGCTAATGGCGGgggaaaaaagc                         >  1:8448551‑M1/1‑24 (MQ=255)
           caAAAATGAAGCCGCTAATGGCGGGGGAAATAAGc                         >  1:19615541/1‑35 (MQ=21)
           aaaaaaGAAAGCCGCTAATGGCGGCGAAAATCAGc                         <  1:11015581/34‑1 (MQ=25)
           aaaaaaAGAAGGCCGCTAATGGCGGCGAAAATCAg                          <  1:10097713/34‑1 (MQ=21)
            aaaaaTGAAGCCGCTAATGGCGGGGGAAAACAgga                        >  1:4988887/1‑33 (MQ=21)
             aaaaTGAAGCCGCTAATGGCGGGGGAAAACAGCaa                       >  1:2452453/1‑34 (MQ=25)
             aaaaTGAAGCCGCTAATGGCGGGGGAAAACAGCaa                       >  1:19521706/1‑34 (MQ=25)
              aaaTGAAGCCGCTAATGGCGGggggaaaaagaaaa                      >  1:9172282‑M1/1‑21 (MQ=255)
               aaTGAAGCCGCTAATGGCGGggggaaaaagaaaaa                     >  1:8649812‑M1/1‑20 (MQ=255)
               aaTGAAGCCGCTAATGGCGGGGGAAAAAAACATaa                     >  1:6788204/1‑35 (MQ=12)
               aaTAAACCCGCTAATGGCGGCGAAAATCAGCATaa                     <  1:12154027/35‑1 (MQ=25)
                ataaaGCCGCTAATGGCGGCGAAAATCAGCATaaa                    <  1:19751120/32‑1 (MQ=255)
                aaaaaGCCGCTAATGGCGGCGAAAATCAGCATaaa                    <  1:8933845/32‑1 (MQ=255)
                aaaaaGCCGCTAATGGCGGCGAAAATCAGCATaaa                    <  1:9351237/32‑1 (MQ=255)
                aTGAAGCCGCTAATGGCGGggggaaaaagaataaa                    >  1:2532559‑M1/1‑19 (MQ=255)
                 aaaaGCCGCTAATGGCGGCGAAAATCAGCATaaaa                   <  1:14088706/33‑1 (MQ=255)
                  aaaGCCGCTAATGGCGGCGAAAATCAGCATAAAAc                  <  1:4189588/34‑1 (MQ=255)
                  aaaGCCGCTAATGGCGGCGAAAATCAGCATAAAAc                  <  1:15167753/34‑1 (MQ=255)
                  aaaGCCGCTAATGGCGGCGAAAATCAGCATAAAAc                  <  1:17862683/34‑1 (MQ=255)
                   aaGCCGCTAATGGCGGGGGAAAAAAGCATaaaaaa                 >  1:18691641/1‑33 (MQ=16)
                   aaGCCGCTAATGGCGGCGAAAATCAGCATAAAACg                 <  1:10519327/35‑1 (MQ=255)
                   aaGCCGCTAATGGCGGCGAAAATCAGCATAAAACg                 <  1:11923198/35‑1 (MQ=255)
                   aaGCCGCTAATGGCGGCGAAAATCAGCATAAAACg                 <  1:18863279/35‑1 (MQ=255)
                    aGCCGCTAATGGCGGCGAAAATCAGCATAAAACgg                <  1:13707178/35‑1 (MQ=255)
                    aGCCGCTAATGGCGGCGAAAATCAGCATAAAACgg                <  1:19437342/35‑1 (MQ=255)
                     acccGCTAATGGCGGCGAAAATCAGCGTAAAACgg                <  1:4807040/33‑1 (MQ=25)
                       ccGCTAATGGCGGCGAAAATCAGCATAAAACGGCt              <  1:15350460/35‑1 (MQ=255)
                       ccGCTAATGGCGGCGAAAATCAGCATAAAACGGCt              <  1:8650963/35‑1 (MQ=255)
                        cGCTAATGGCGGCGAAAATCAGCATAAAACGGCTg             <  1:19908892/35‑1 (MQ=255)
                        cGCTAATGGCGGCGAAAATCAGCATAAAACGGCTg             <  1:19803044/35‑1 (MQ=255)
                        cGCTAATGGCGGCGAAAATCAGCATAAAACGGCTg             <  1:18420584/35‑1 (MQ=255)
                        cGCTAATGGCGGCGAAAATCAGCATAAAACGGCTg             <  1:19352767/35‑1 (MQ=255)
                        cGCTAATGGCGGCGAAAATCAGCATAAAACGGCTg             <  1:8726480/35‑1 (MQ=255)
                        cGCTAATGGCGGCGAAAATCAGCATAAAACGGCTg             <  1:630894/35‑1 (MQ=255)
                        cGCTAATGGCGGCGAAAATCAGCATAAAACGGATg             <  1:11085800/35‑1 (MQ=255)
                         gCTAATGTCGGCGAAAATCAGCATAAAACGGCTgg            >  1:5448570/1‑35 (MQ=255)
                         gCTAATGGCGGCGAAAATCAGCATAAAACGGCTgg            <  1:14002670/35‑1 (MQ=255)
                         gCTAATGGCGGCGAAAATCAGCATAAAACGGCTgg            <  1:16103542/35‑1 (MQ=255)
                           tAATGGCGGCGAAAATCAGCATAAAACGGCTGGTc          <  1:15105925/35‑1 (MQ=255)
                           tAATGGCGGCGAAAATCAGCATAAAACGGCTGGTc          <  1:8459533/35‑1 (MQ=255)
                           tAATGGCGGCGAAAATCAGCATAAAACGGCTGGTc          <  1:10204321/35‑1 (MQ=255)
                            aaTGGCGGCGAAAATCAGCATAAAACGGCTGGtaa         <  1:7903149/35‑3 (MQ=255)
                            aaTGGCGGCGAAAATCAGCATAAAACGGCTGGTCa         <  1:1718081/35‑1 (MQ=255)
                            aaTGGCGGCGAAAATCAGCATAAAACGGCTGGTCa         <  1:19089707/35‑1 (MQ=255)
                            aaTGGCGGCGAAAATCAGCATAAAACGGCTGGTCa         <  1:19261721/35‑1 (MQ=255)
                            aaTGGCGGCGAAAATCAGCATAAAACGGCTGGTCa         <  1:15324213/35‑1 (MQ=255)
                              tGGCGGCGAAAATCAGCATAAAACGGCTGGTCATg       <  1:15633903/35‑1 (MQ=255)
                              tGGCGGCGAAAATCAGCATAAAACGGCTGGTCATg       <  1:4880497/35‑1 (MQ=255)
                              tGGCGGCGAAAATCAGCATAAAACGGCTGGTCATg       <  1:3673214/35‑1 (MQ=255)
                               ggcggcGAAAATCAGCATAAAACGGCTGGTCATgg      <  1:12460377/35‑1 (MQ=255)
                               ggcggcGAAAATCAGCATAAAACGGCTGGTCATgg      <  1:16084161/35‑1 (MQ=255)
                                gcggcgAAAATCAGCATAAAACGGCTGGTCATGGt     <  1:1832148/35‑1 (MQ=255)
                                gcggcgAAAATCAGCATAAAACGGCTGGGGATGGt     >  1:3750318/1‑35 (MQ=25)
                                 cggcgAAAATCAGCATAAAACGGCTGGTCATGGTc    <  1:9335871/35‑1 (MQ=255)
                                 cggcgAAAATCAGCATAAAACGGCTGGTCATGGTc    <  1:16041952/35‑1 (MQ=255)
                                 cggcgAAAATCAGCATAAAACGGCTGGGGATgggc    >  1:10782424/1‑33 (MQ=25)
                                 cggcgAAAATCAGCATAAAACGGCTGGGGATgggc    >  1:15488942/1‑33 (MQ=25)
                                  ggcgAAAATCAGCATAAAACTGCTGGTCATGGTCg   >  1:12657976/1‑35 (MQ=255)
                                   gggggaaaaagaaaaaaaattctgatcagcacaaa  >  1:7241996‑M1/1‑1 (MQ=255)
                                   gggggaaaaagaaaaaaaattctgatcagcacaaa  >  1:1828663‑M1/1‑1 (MQ=255)
                                   gcgAAAATCAGCATAAAACGGCTGGTCATGGTCGt  <  1:8619028/35‑1 (MQ=255)
                                   gcgAAAATCAGCATAAAACGGCTGGTCATGGTCGt  <  1:3223416/35‑1 (MQ=255)
                                   gcgAAAATCAGCATAAAACGGCTGGTCATGGTCGt  <  1:15420377/35‑1 (MQ=255)
                                   gcgAAAATCAGCATAAAACGGCTGGTCATGGTCGt  <  1:16256614/35‑1 (MQ=255)
                                   gcgAAAATCAGCATAAAACGGCTGGGGATGGGCgg  >  1:4437818/1‑34 (MQ=25)
                                   |                                  
GCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGGCGAAAATCAGCATAAAACGGCTGGTCATGGTCGT  >  REL606/2836188‑2836256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.