New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 866988 = | 115 (1.120) | 7 (0.090) | 4/38 | NT | 9.9% | coding (1206/2097 nt) | yliE | conserved inner membrane protein |
? | REL606 | = 4527146 | 37 (0.450) | coding (1137/2637 nt) | fimD | outer membrane usher protein, type 1 fimbrial synthesis |
Only 100 of 104 total aligned reads displayed.
TGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGG > REL606/4527112‑4527180 | tGCAACGTGAAGGGCATACTCGTTATTCCATTACg < 1:865263/35‑1 (MQ=255) tGCAACGTGAAGGGCATACTCGTTATTCCATTACg > 1:12141370/1‑35 (MQ=255) tGCAACGTGAAGGGCATACTCGTTATTCCATTACg < 1:7317552/35‑1 (MQ=255) tGCAACGTGAAGGGCATACTCGTTATTCCATTACg > 1:17283854/1‑35 (MQ=255) gCAACGTGAAGGGCATACTCGTTATTCCATTACGg > 1:16271018‑M2/1‑34 (MQ=255) gCAACGTGAAGGGCATACTCGTTATTCCATTACGg > 1:8252483‑M2/1‑34 (MQ=255) gCAACGTGAAGGGCATACTCGTTATTCCATTACGg > 1:15692301‑M2/1‑34 (MQ=255) gCAACGTGAAGGGCATACTCGTTATTCCATTACGg > 1:7451188‑M2/1‑34 (MQ=255) gCAACGTGAAGGGCATACTCGTTATTCCATTACGg > 1:4685235‑M2/1‑34 (MQ=255) cAACGTGAAGGGCATACTCGTTATTCCATTACGgc < 1:8392629‑M2/35‑3 (MQ=255) cAACGTGAAGGGCATACTCGTTATTCCATTACGgc > 1:7207761‑M2/1‑33 (MQ=255) cAACGTGAAGGGCATACTCGTTATTCCATTACGgc > 1:15411847‑M2/1‑33 (MQ=255) cAACGTGAAGGGCATACTCGTTATTCCATTACGgc > 1:17010600‑M2/1‑33 (MQ=255) cAACGTGAAGGGCATACTCGTTATTCCATTACGgc > 1:1479734‑M2/1‑33 (MQ=255) aaCGTGAAGGGCATACTCGTTATTCCATTNCGgcn < 1:14466651‑M2/35‑4 (MQ=255) aaCGTGAAGGGCATACTCGTTATTCCATTACGgca < 1:2517770‑M2/35‑4 (MQ=255) aaCGTGAAGGGCATACTCGTTATTCCATTACGgca > 1:8009087‑M2/1‑32 (MQ=255) aCGTGAATGGCATACTCGTTATTCCATTACGgcag < 1:14427023‑M2/35‑5 (MQ=255) aCGTGAAGGGCATACTCGTTATTCCATTACGgcag < 1:3430276‑M2/35‑5 (MQ=255) aCGTGAAGGGCATACTCGTTATTCCATTACGgcag < 1:16446058‑M2/35‑5 (MQ=255) aCGTGAAGGGCATACTCGTTATTCCATTACGgcag > 1:5149747‑M2/1‑31 (MQ=255) aCGTGAAGGGCATACTCGTTATTCCATTACGgcag < 1:1679130‑M2/35‑5 (MQ=255) aCGTGAAGGGCATACTCGTTATTCCATTACGgcag > 1:1448704‑M2/1‑31 (MQ=255) aCGTGAAGGGCATACTCGTTATTCCATTACGgcag < 1:8903094‑M2/35‑5 (MQ=255) cGTGAAGGGCATACTCGTTATTCCATTACGgcagg > 1:17632237‑M2/1‑30 (MQ=255) cGTGAAGGGCATACTCGTTATTCCATTACGgcagg > 1:4463238‑M2/1‑30 (MQ=255) cGTGAAGGGCATACTCGTTATTCCATTACGgcagg > 1:15976117‑M2/1‑30 (MQ=255) cGTGAAGGGCATACTCGTTATTCCATTACGgcagg < 1:10344590‑M2/35‑6 (MQ=255) gTGAAGGGCATACTCGTTATTCCATTACGgcaggg < 1:20223483‑M2/35‑7 (MQ=255) gTGAAGGGCATACTCGTTATTCCATTACGGCAGga < 1:16534914/35‑1 (MQ=255) tGAAGGGCATACTCGTTATTCCATTACGGCAGgag < 1:5590002/35‑1 (MQ=255) tGAAGGGCATACTCGTTATTCCATTACGGCAGgag < 1:6543849/35‑1 (MQ=255) gAAGGGCATACTCGTTATTCCATTACGgcaggggg < 1:245634‑M2/35‑9 (MQ=255) aaGGGCATACTCGTTATTCCATTACGgcagggggg < 1:4844502‑M2/35‑10 (MQ=255) aaGGGCATACTCGTTATTCCATTACGgcaggggga < 1:2506501‑M2/35‑10 (MQ=255) aaGGGCATACTCGTTATTCCATTACGgcaggggga < 1:5518317‑M2/35‑10 (MQ=255) aaGGGCATACTCGTTATTCCATTACGgcaggggga < 1:206927‑M2/35‑10 (MQ=255) aGGGCATACTCGTTATTCCATTACGgcaggggaaa < 1:19234664‑M2/35‑11 (MQ=255) aGGGCATACTCGTTATTCCATTACGGCAGGAGAAt < 1:8079469/35‑1 (MQ=255) gggCATACTCGTTATTCCATTACGgcaggggggaa < 1:18154511‑M2/35‑12 (MQ=255) gggCATACTCGTTATTCCATTACGgcagggggaaa < 1:4672696‑M2/35‑12 (MQ=255) gggCATACTCGTTATTCCATTACGGCAGGAGAATa < 1:17650329/35‑1 (MQ=255) ggCATACTCGTTATTCCATTACGgcagggggaaaa < 1:5496709‑M2/35‑13 (MQ=255) ggCATACTCGTTATTCCATTACGgcagggggaaaa < 1:20153165‑M2/35‑13 (MQ=255) ggCATACTCGTTATTCCATTACGGCAGGAGAGTAc < 1:16990690/35‑1 (MQ=255) ggCATACTCGTTATTCCATTACGGCAGGAGAATAc < 1:7628576/35‑1 (MQ=255) ggCATACTCGTTATTCCATTACGGCAGGAGAATAc < 1:19683150/35‑1 (MQ=255) ggCATACTCGTTATTCCATTACGGCAGGAGAATAc < 1:13978829/35‑1 (MQ=255) gCATACTCGTTATTCCATTACGgcagggggaaaac < 1:4959292‑M2/35‑14 (MQ=255) gCATACTCGTTATTCCATTACGGCAGGAGAATAcc < 1:6328861/35‑1 (MQ=255) gCATACTCGTTATTCCATTACGGCAGGAGAATAcc < 1:2511297/35‑1 (MQ=255) cATACTCGTTATTCCATTACGgcagggggaaaccg < 1:10834086‑M2/35‑15 (MQ=255) cATACTCGTTATTCCATTACGgcagggggaaaacg < 1:1618834‑M2/35‑15 (MQ=255) cATACTCGTTATTCCATTACGGCAGGGGAATaacc > 1:6161223/1‑32 (MQ=37) cATACTCGTTATTCCATTACGGCAGGAGAATACCg < 1:7759743/35‑1 (MQ=255) cATACTCGTTATTCCATTACGGCAGGAGAATACCg < 1:6959466/35‑1 (MQ=255) cATACTCGTTATTCCATTACGGCAGGAGAATACCg < 1:3291290/35‑1 (MQ=255) aTACTCGTTATTCCATTGCGGCAGGAGAATACCGt < 1:5559549/35‑1 (MQ=255) aTACTCGTTATTCCATTACGGCAGGAGAATACCGt < 1:2957012/35‑1 (MQ=255) tACTCGTTATTCCATTACGgcagggggaaaccgca < 1:19759969‑M2/35‑17 (MQ=255) tACTCGTTATTCCATTACGGCAGGAGAATACCGTa < 1:17114969/35‑1 (MQ=255) aCTCGTTATTCCATTACGGCAGGGGGATACCGTAg > 1:19445946/1‑35 (MQ=37) aCTCGTTATTCCATTACGGCAGGGGGATACCCTAg > 1:7422888/1‑35 (MQ=25) aCTCGTTATTCCATTACGGCAGGAGAATACCGTAg < 1:6336316/35‑1 (MQ=255) aCTCGTTATTCCATTACGGCAGGAGAATACCGTAg < 1:13658792/35‑1 (MQ=255) cTCGTTATTCCATTACGTCAGGAGAATACCGTAGt < 1:2541549/35‑1 (MQ=255) cTCGTTATTCCATTACGGCAGGGGGATACCGTAGt > 1:14405528/1‑35 (MQ=37) cTCGTTATTCCATTACGGCAGGGGAAAACCGCAgg > 1:16507360/1‑34 (MQ=21) tCGTTATTCCATTACGGCAGGAGAATACCGTAGTg < 1:16479415/35‑1 (MQ=255) tCGTTATTCCATTACGGCAGGAGAATACCGTAGTg < 1:2705277/35‑1 (MQ=255) cGTTATTCCATTACGGCAGGGGGAGACCGTAGGgg > 1:9080053/1‑35 (MQ=16) cGTTATTCCATTACGGCAGGAGAATACCGTAGTgg < 1:16315210/35‑1 (MQ=255) cGTTATTCCATTACGGCAGGAGAATACCGTAGTgg < 1:18610228/35‑1 (MQ=255) cGTTATACCATTACGGCAGGGGGATACCGTAGTgg > 1:5371609/1‑35 (MQ=25) gTTATTCCATTACGGCAGGAGAATACCGTAGTGGa < 1:1799341/35‑1 (MQ=255) ttATTCCATTACGGCAGGAGAATACCGTAGTGGaa < 1:20896/35‑1 (MQ=255) tATTCCATTACGGCAGGGGGATAACGTAGGGGaaa > 1:16737161/1‑35 (MQ=19) tATTCCATTACGGCAGGAGAATACCGTAGTGGaaa < 1:2883609/35‑1 (MQ=255) tATTCCATTACGGCAGGAGAATACCGTAGTGGaaa < 1:15996367/35‑1 (MQ=255) ttCCATTACGGCAGGAGAATACCGTAGTGGAAATg < 1:9254891/35‑1 (MQ=255) ttCCATTACGGCAGGAGAATACCGTAGTGGAAATg < 1:162705/35‑1 (MQ=255) tCCATTACGGCAGGAGAATACCGTAGTGGAAATgc < 1:17779233/35‑1 (MQ=255) tCCATTACGGCAGGAGAATACCGTAGTGGAAATgc < 1:16664775/35‑1 (MQ=255) ttACGGCAGGAGAATACCGTAGTGGAAATGCgcag < 1:9263679/35‑1 (MQ=255) ttACGGCAGGAGAATACCGTAGTGGAAATGCgcag < 1:4048355/35‑1 (MQ=255) ttACGGCAGGAGAATACCGTAGTGGAAATGCgcag < 1:14666629/35‑1 (MQ=255) ttACGGCAGGAGAATACCGTAGTGGAAATGCgcag < 1:5897388/35‑1 (MQ=255) tACGGCAGGAGAATACCGTAGTGGAAATGCgcagc < 1:6339249/35‑1 (MQ=255) tACGGCAGGAGAATACAGTAGTGGAAATGCgcagc < 1:13559308/35‑1 (MQ=255) aCGGCAGGAGAATACCGTAGTGGAAATGCgcagca < 1:11329488/35‑1 (MQ=255) aCGGCAGGAGAATACCGTAGTGGAAATGCgcagca < 1:6014330/35‑1 (MQ=255) cGGCAGGAGAATACCGTAGTGGAAATGCGcagcag < 1:550290/35‑1 (MQ=255) cGGCAGGAGAATACCGTAGTGGAAATGCGcagcag < 1:15932064/35‑1 (MQ=255) cGGCAGGAGAATACCGTAGTGGAAATGCGcagcag > 1:20128543/1‑35 (MQ=255) cGGCAGGAGAATACCGTAGTGGAAATGCGcagcag < 1:8321220/35‑1 (MQ=255) cGGCAGGAGAATACCGTAGTGGAAATGCGcagcag < 1:10937234/35‑1 (MQ=255) ggCAGGAGAATACCGTAGTGGAAATGCGCAGCAgg < 1:11499348/35‑1 (MQ=255) ggCAGGAGAATACCGTAGTGGAAATGCGCAGCAgg > 1:11028163/1‑35 (MQ=255) ggCAGGAGAATACCGTAGTGGAAATGCGCAGCAgg > 1:8417672/1‑35 (MQ=255) ggCAGGAGAATACCGTAGTGGAAATGCGCAGCAgg < 1:19607765/35‑1 (MQ=255) | TGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGG > REL606/4527112‑4527180 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |