New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422127 =69 (0.670)8 (0.120) 4/32 NT 15.8% coding (187/948 nt) cyoA cytochrome o ubiquinol oxidase subunit II
?REL606 4480474 = 39 (0.570)coding (497/1191 nt) intB predicted integrase

Only 100 of 167 total aligned reads displayed.

TTATTGCTCGCACGATACTTCCAGGCGAAACCAACAGCCATCAAGATTGCGGGAATAACGACAATCAAC  >  REL606/422093‑422161
                                  |                                  
ttATTGCTGGCACGATACTTCCAGGCGAAACCAAc                                    <  1:8522578/35‑1 (MQ=255)
ttATTGCTCGCACGATACTTCCAGGCGAAACCAAc                                    <  1:8739505/35‑1 (MQ=255)
ttATTGCTCGCACGATACTTCCAGGCGAAACCAAc                                    <  1:19544127/35‑1 (MQ=255)
ttATTGCTCGCACGATACTTCCAGGCGAAACCAAc                                    <  1:2816288/35‑1 (MQ=255)
ttATTGCTCGCACGATACTTCCAGGCGAAACCAAc                                    >  1:7426014/1‑35 (MQ=255)
 tATTGCTCGCACGATACTTCCAGGCGAAACCAACa                                   <  1:10057632/35‑1 (MQ=255)
 tATTGCTCGCACGATACTTCCAGGCGAAACCAACa                                   >  1:10157745/1‑35 (MQ=255)
 tATTGCTCGCACGATACTTCCAGGCGAAACCAACa                                   <  1:3324766/35‑1 (MQ=255)
  acgatgttgtcgattacaggaagcaaccgcccCAg                                  <  1:12637170‑M1/3‑1 (MQ=255)
  aTTGCTCGCACGATACTTCCAGGCGAAACCAACAg                                  <  1:13859182/35‑1 (MQ=255)
  aTTGCTCGCACGATACTTCCAGGCGAAACCAACAg                                  <  1:11502453/35‑1 (MQ=255)
   ttGCTCGCACGATACTTCCAGGCGAAACCAACAGc                                 >  1:1944696/1‑35 (MQ=255)
   ttGCTCGCACGATACTTCCAGGCGAAACCAACAGc                                 >  1:8437127/1‑35 (MQ=255)
   ttGCTCGCACGATACTTCCAGGCGAAACCAACAGc                                 >  1:15612521/1‑35 (MQ=255)
   ttGCTCGCACGATACTTCCAGGCGAAACCAACAGc                                 >  1:14726295/1‑35 (MQ=255)
   ttGCTCGCACGATACTTCCAGGCGAAACCAACAGc                                 >  1:18598327/1‑35 (MQ=255)
   ttGCTCGCACGATACTTCCAGGCGAAACCAACAGc                                 >  1:17891549/1‑35 (MQ=255)
   cgatgttgtcgattacagtaagcaaccgcccCAGc                                 <  1:7191091‑M1/4‑1 (MQ=255)
     gCTCGCACGATACTTCCAGGCGAAACCAACAGCCa                               >  1:7988729/1‑35 (MQ=255)
     gCTCGCACGATACTTCCAGGCGAAACCAACAGCCa                               >  1:19591684/1‑35 (MQ=255)
     atgttgtctattacaggaagcaaccgcccCAGCCa                               <  1:1435247‑M1/6‑1 (MQ=255)
     atgttgtcgattacaggaagcaaccgcccCAGCCa                               <  1:1872209‑M1/6‑1 (MQ=255)
     atgttgtcgattacaggaagcaaccgcccCAGCCa                               <  1:6692275‑M1/6‑1 (MQ=255)
      cccGCACGATACTTCCAGGCGAAACCAACAGCCAt                              >  1:1658899/3‑35 (MQ=255)
      cTCGCACGATACTTCCAGGCGAAACCAACAGCCAt                              >  1:2632991/1‑35 (MQ=255)
      cTCGCACGATACTTCCAGGCGAAACCAACAGCCAt                              >  1:2627819/1‑35 (MQ=255)
       tCGCACGATACTTCCAGGCGAAACCAACAGCCATc                             >  1:1540253/1‑35 (MQ=255)
       tCGCACGATACTTCCAGGCGAAACCAACAGCCATc                             >  1:2471593/1‑35 (MQ=255)
       tCGCACGATACTTCCACGCGAAACCAACAGCCATc                             >  1:1083867/1‑35 (MQ=255)
        cGCACGATACTTCCAGGCGAAACCAACAGCCATCa                            >  1:4214745/1‑35 (MQ=255)
        cGCACGATACTTCCAGGCGAAACCAACAGCCATCa                            >  1:4513253/1‑35 (MQ=255)
        cGCACGATACTTCCAGGCGAAACCAACAGCCATCa                            >  1:17194664/1‑35 (MQ=255)
         gCACGATACTTCCAGGCTAAACCAACAGCCATCaa                           >  1:10929700/1‑35 (MQ=255)
         gCACGATACTTCCAGGCGAAACCAACAGCCATCaa                           >  1:19827/1‑35 (MQ=255)
         gCACGATACTTCCAGGCGAAACCAACAGCCATCaa                           >  1:13672363/1‑35 (MQ=255)
          cACGATACTTCCAGGCGAAACCAACAGCCATCAAg                          >  1:16255952/1‑35 (MQ=255)
           aCGATACTTCCAGGCGAAACCAACAGCCATCAAGa                         >  1:11170110/1‑35 (MQ=255)
           aCGATACTTCCAGGCGAAACCAACAGCCATCAAGa                         >  1:4388656/1‑35 (MQ=255)
             gATACTTCCAGGCGAAACCAACAGCCATCAAGAtt                       >  1:12621365/1‑35 (MQ=255)
             gATACTTCCAGGCGAAACCAACAGCCATCAAGAtt                       >  1:1301741/1‑35 (MQ=255)
             gATACTTCCAGGCGAAACCAACAGCCATCAAGAtt                       >  1:3006549/1‑35 (MQ=255)
              aTACTTCCAGGCGAAACCAACAGCCATCAAGATTg                      >  1:14381100/1‑35 (MQ=255)
                aCTTCCAGGCGAAACCAACAGCCATCAAGATTGct                    >  1:11326532/1‑34 (MQ=255)
                 cTTCCAGGCGAAACCAACAGCCATCAAGATTGCgg                   >  1:8027419/1‑35 (MQ=255)
                 cTTCCAGGCGAAACCAACAGCCATCAAGATTGCgg                   >  1:8337530/1‑35 (MQ=255)
                 cTTCCAGGCGAAACCAACAGCCATCAAGATTGCgg                   >  1:5766592/1‑35 (MQ=255)
                  ttCCAGGCGAAACCAACAGCCATCAAGATTGCgtg                  >  1:1686845/1‑33 (MQ=255)
                    ccAGGCGAAACCAACAGCCATCAAGATTGCGGGaa                >  1:14970411/1‑35 (MQ=255)
                    ccAGGCGAAACCAACAGCAATCAAGATTGCGGGaa                <  1:3616303/35‑1 (MQ=255)
                     cAGGCGAAACCAACAGCCATCAAGATTGCGGGAAt               >  1:11058293/1‑35 (MQ=255)
                     cAGGCGAAACCAACAGCCATCAAGATTGCGGGAAt               >  1:5432850/1‑35 (MQ=255)
                      aGGCGAAACCAACAGCCATCAAGATTGCGGGAATa              >  1:9852720/1‑35 (MQ=255)
                      aGGCGAAACCAACAGCCATCAAGATTGCGGGAATa              >  1:6936069/1‑35 (MQ=255)
                        gcaaccccccCAGCCATCAAGATTGCGGGAATAAc            >  1:16715812‑M1/11‑35 (MQ=255)
                        gCGAAACCAACAGCCATCAAGATTGCGGGAATAAc            >  1:1674434/1‑35 (MQ=255)
                        gCGAAACCAACAGCCATCAAGATTGCGGGAATAAc            >  1:15999186/1‑35 (MQ=255)
                        gCGAAACCAACAGCCATCAAGATTGCGGGAATAAc            >  1:3305854/1‑35 (MQ=255)
                        gCGAAACCAACAGCCATCAAGATTGCGGGAATAAc            >  1:10360798/1‑35 (MQ=255)
                        ccaaccccccCAGCCATCAAGATTGCGGGAATAAc            >  1:6237070‑M1/11‑35 (MQ=255)
                         caaccccccCAGCCATCAAGATTGCGGGAATAACg           >  1:616367‑M1/10‑35 (MQ=255)
                         cGAAACCAACAGCCATCAAGATTGCGGGAATAACg           >  1:15203282/1‑35 (MQ=255)
                         cGAAACCAACAGCCATCAAGATTGCGGGAATAACg           >  1:8446069/1‑35 (MQ=255)
                          gAAACCAACAGCCATCAACATTGCGGGAATAACGa          >  1:9736560/1‑35 (MQ=255)
                          gAAACCAACAGCCATCAACATTGCGGGAATAACGa          >  1:1348067/1‑35 (MQ=255)
                          aaccccccCAGCCATCAAGATTGCGGGAATAACGa          >  1:3376620‑M1/9‑35 (MQ=255)
                           accccccCAGCCATCAAGATTGCGGGAATAACGAc         >  1:8049433‑M1/8‑35 (MQ=255)
                            acccccCAGCCATCAAGATTGCGGGAATAACGACa        >  1:18563728‑M1/7‑35 (MQ=255)
                            aaCCAACAGCCATCAAGATTGCTGGAATAACGACa        >  1:18330065/1‑35 (MQ=255)
                            aaCCAACAGCCATCAAGATTGCGGGAATAACGACa        >  1:19175755/1‑35 (MQ=255)
                            aaCCAACAGCCATCAAGATTGCGGGAATAACGACa        >  1:12183427/1‑35 (MQ=255)
                            aaCCAACAGCCATCAAGATTGCGGGAATAACGACa        >  1:4783709/1‑35 (MQ=255)
                            aaCCAACAGCCATCAAGATTGCGGGAATAACGACa        >  1:2040695/1‑35 (MQ=255)
                             cccccCAGCCATCAAGATTGCGGGAATAACGACaa       >  1:1885167‑M1/6‑35 (MQ=255)
                             cccccCAGCCATCAAGATTGCGGGAATAACGACaa       >  1:6131121‑M1/6‑35 (MQ=255)
                             cccccCAGCCATCAAGATTGCGGGAATAACGACaa       >  1:2950493‑M1/6‑35 (MQ=255)
                             aCCAACAGCCATCAAGATTGCGGGAATAACGACaa       >  1:778457/1‑35 (MQ=255)
                             aCCAACAGCCATCAAGATTGCGGGAATAACGACaa       >  1:2649075/1‑35 (MQ=255)
                              ccccCAGCCATCAAGATTGCGGGAATAACGACAAt      >  1:15233919‑M1/5‑35 (MQ=255)
                              ccccCAGCCATCAAGATTGCGGGAATAACGACAAt      >  1:5742913‑M1/5‑35 (MQ=255)
                              ccAACAGCCATCAAGATTGCGGGAATAACGACAAt      >  1:14295868/1‑35 (MQ=255)
                              ccAACAGCCATCAAGATTGCGGGAATAACGACAAt      >  1:15889480/1‑35 (MQ=255)
                              ccAACAGCCATCAAGATTGCGGGAATAACGACAAt      >  1:10733240/1‑35 (MQ=255)
                              ccAACAGCCATCAAGATTGCGGGAATAACGACAAt      >  1:2113288/1‑35 (MQ=255)
                              ccAACAGCCATCAAGATTGCGGGAATAACGACAAt      >  1:1993628/1‑35 (MQ=255)
                              ccAACAGCCATCAAGATTGCGGGAATAACGACAAt      >  1:5074394/1‑35 (MQ=255)
                               cccCAGCCATCAAGATTGCGGGAATAACGACAATc     >  1:584637‑M1/4‑35 (MQ=255)
                               cccCAGCCATCAAGATTGCGGGAATAACGACAATc     >  1:15346050‑M1/4‑35 (MQ=255)
                               cAACAGCCATCAAGATTGCGGGAATAACGACAATc     >  1:2325535/1‑35 (MQ=255)
                               cAACAGCCATCAAGATTGCGGGAATAACGACAATc     >  1:18031052/1‑35 (MQ=255)
                                ccCAGCCATCAAGATTGCGGGAATAACGACAATCa    >  1:8979982‑M1/3‑35 (MQ=255)
                                aaCAGCCATCAAGATTGCGGGAATAACGACAATCa    >  1:10512218/1‑35 (MQ=255)
                                aaCAGCCATCAAGATTGCGGGAATAACGACAATCa    >  1:4127781/1‑35 (MQ=255)
                                 cCAGCCATCAAGATTGCGGGAATAACGACAATCaa   >  1:6552802‑M1/2‑35 (MQ=255)
                                 cCAGCCATCAAGATTGCGGGAATAACGACAATCaa   >  1:16716276‑M1/2‑35 (MQ=255)
                                 aCAGCCATCAAGATTGCGGGAATAACGACAATCaa   >  1:691209/1‑35 (MQ=255)
                                 aCAGCCATCAAGATTGCGGGAATAACGACAATCaa   >  1:19137549/1‑35 (MQ=255)
                                  CAGCCATCAAGATTGCGGGAATAACGACAATCAAc  <  1:6443620‑M1/35‑1 (MQ=255)
                                  CAGCCATCAAGATTGCGGGAATAACGACAATCAAc  <  1:4403221‑M1/35‑1 (MQ=255)
                                  CAGCCATCAAGATTGCGGGAATAACGACAATCAAc  <  1:19928724‑M1/35‑1 (MQ=255)
                                  CAGCCATCAAGATTGCGGGAATAACGACAATCAAc  >  1:15252426‑M1/1‑35 (MQ=255)
                                  |                                  
TTATTGCTCGCACGATACTTCCAGGCGAAACCAACAGCCATCAAGATTGCGGGAATAACGACAATCAAC  >  REL606/422093‑422161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.