New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 290073192 (0.900)9 (0.110) 3/40 NT 13.3% coding (82/771 nt) yqeC hypothetical protein
?REL606 4370910 = 41 (0.480)intergenic (+97/+173) glyY/yjeS tRNA‑Gly/predicted Fe‑S electron transport protein

TCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2900694‑2900731
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcCTCAGGCTGTAATCTTAATTTCAAAGAAACTTCG  >  REL606/4370910‑4370943
                                                                        
tccGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                       <  1:3477834/32‑1
TCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                       >  1:18728536/1‑35
TCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                       >  1:2464899/1‑35
TCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                       >  1:17878627/1‑35
TCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                       <  1:3991868/35‑1
TCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                       <  1:13370255/35‑1
TCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                       <  1:10005673/35‑1
TCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCC                                       >  1:8864986/1‑35
 ctcCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                      <  1:948370/32‑1
 CTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                      <  1:6932931/35‑1
 CTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                      >  1:6885774/1‑35
 CTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                      <  1:14855704/35‑1
 CTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                      <  1:3899021/35‑1
 CTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                      <  1:358164/35‑1
 CTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                      >  1:9016480/1‑35
 CTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                      <  1:17291301/35‑1
 CTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCA                                      >  1:17359564/1‑35
  gGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAG                                     <  1:13957744/34‑1
  TGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAG                                     >  1:217273/1‑35
  TGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAG                                     >  1:17831976/1‑35
  TGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAG                                     <  1:16869266/35‑1
  TGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAG                                     >  1:16761265/1‑35
   GCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGC                                    <  1:14733318/35‑1
                       agaTTTCCCCCCAGCCTCAGGCTGTAATCTTAATT                <  1:1322952/32‑1
                       GGTTTTCCCCCCAGCCTCAGGCTGTAATCTTAATT                <  1:7261011/35‑1
                         aTTTCCCCCCAGCCTCAGGCTGTAATCTTAATTTC              <  1:2779359/34‑1
                         aTTTCCCCCCAGCCTCAGGCTGTAATCTTAATTTC              <  1:9793257/34‑1
                         aTTTCCCCCCAGCCTCAGGCTGTAATCTTAATTTC              <  1:1331012/34‑1
                         TTTTCCCCCCAGCCTCAGGCTGTAATCTTAATTTC              <  1:6951668/35‑1
                          TTTCCCCCCAGCCTCAGGCTGTAATCTTAATTTCA             <  1:2296185/35‑1
                          TTTCCCCCCAGCCTCAGGCTGTAATCTTAATTTCA             <  1:17567557/35‑1
                          TTTACCCCCAGCCTCAGGCTGTAATCTTAATTTCA             <  1:3037177/35‑1
                            taCCCCCAGCCTCAGGCTGTAATCTTAATTTCAAA           <  1:7674614/33‑1
                             aCCCCCAGCCTCAGGCTGTAATCTTAATTTCAAAG          <  1:97567/34‑1
                             aCCCCCAGCCTCAGGCTGTAATCTTAATTTCAAAG          <  1:17509686/34‑1
                             CCCCCCAGCCTCAGGCTGTAATCTTAATTTCAAAG          <  1:16732276/35‑1
                             CCCCCCAGCCTCAGGCTGTAATCTTAATTTCAAAG          <  1:16662428/35‑1
                              CCCCCAGCCTCAGGCTGTAATCTTAATTTCAAAGA         <  1:8186920/35‑1
                              CCCCCAGCCTCAGGCTGTAATCTTAATTTCAAAGA         <  1:5109541/35‑1
                               CCCCAGCCTCAGGCTGTAATCTTAATTTCAAAGAA        <  1:11631308/35‑1
                               CCCCAGCCTCAGGCTGTAATCTTAATTTCAAAGAA        <  1:7189374/35‑1
                               CCCCAGCCTCAGGCTGTAATCTTAATTTCAAAGAA        <  1:18180398/35‑1
                                CCCAGCCTCAGGCTGTAATCTTAATTTCAAAGAAA       <  1:385628/35‑1
                                 CCAGCCTCAGGCTGTAATCTTAATTTCAAAGAAAC      <  1:3149275/35‑1
                                 CCAGCCTCAGGCTGTAATCTTAATTTCAAAGAAAC      <  1:12299406/35‑1
                                 CCAGCCTCAGGCTGTAATCTTAATTTCAAAGAAAC      <  1:12059952/35‑1
                                  CAGCCTCAGGCTGTAATCTTAATTTCAAAGAAACT     <  1:13972433/35‑1
                                  CAGCCTCAGGCTGTAATCTTAATTTCAAAGAAACT     <  1:13905647/35‑1
                                  CAGCCTAAGGCTGTAATCTTAATTTCAAAGAAACT     <  1:15319638/35‑1
                                   AGCCTCAGGCTGTAATCTTAATTTCAAAGAAACTT    >  1:12827926/1‑35
                                   AGCCTCAGGCTGTAATCTTAATTTCAAAGAAACTT    <  1:19604087/35‑1
                                    GCCTCAGGCTGTAATCTTAATTTCAAAGAAACTTC   <  1:2086155/35‑1
                                     CCTCAGGCTGTAATCTTAATTTCAAAGAAACTTCG  <  1:6677884/35‑1
                                     CCTCAGGCTGTAATCTTAATTTCAAAGAAACTTCG  <  1:4873618/35‑1
                                                                        
TCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2900694‑2900731
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcCTCAGGCTGTAATCTTAATTTCAAAGAAACTTCG  >  REL606/4370910‑4370943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.