New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1181580 | 88 (0.860) | 8 (0.100) | 3/38 | NT | 11.2% | coding (919/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
? | REL606 | 2872317 = | 57 (0.700) | coding (1204/1263 nt) | lysA | diaminopimelate decarboxylase, PLP‑binding |
Only 100 of 147 total aligned reads displayed.
CTGGTGGTGGAACCGACGCTGCAAACCACCCGCGATCCAGACATTTACGCTATTGGCGACTGCGCGTC > REL606/1181547‑1181614 | cTGGTGGTGGAACCGACGCTGCAAACCACCCGCGa > 1:4602370/1‑35 (MQ=255) gtggtggAACCGACTCTGCAAACCACCCGCGATcc > 1:11748824/1‑35 (MQ=255) gtggtggAACCGACGCTGCAAACCACCCGCGATcc > 1:2919427/1‑35 (MQ=255) ggggtggCCCCGACGCTGCAAACCACCCGCGATcc < 1:13756543/33‑1 (MQ=25) tggtggAACCGACGCTGCAAACCACCCGCGATCCa > 1:11542939/1‑35 (MQ=255) tggtggAACCGACGCTGCAAACCACCCGCGATCCa > 1:3647337/1‑35 (MQ=255) ggtggAACCGACGCTGCAAACCACCCGCGATCCAg > 1:18617497/1‑35 (MQ=255) gggggACCCGACGCTGCAAACCACCCGCGATCCAg < 1:20184105/32‑1 (MQ=37) tggAACCGACGCTGCAAACCACCCGCGATCCAGAc > 1:19167210/1‑35 (MQ=255) tggAACCGACGCTGCAAACCACCCGCGATCCAGAc > 1:2877003/1‑35 (MQ=255) ggAACCGACGCTGCAAACCACCCGCGATCCAGACa > 1:6233982/1‑35 (MQ=255) gAACCGACGCTGCAAACCACCCGCGATCCAGACAt > 1:19349279/1‑35 (MQ=255) gAACCGACGCTGCAAACCACCCGCGATCCAGACAt > 1:2510700/1‑35 (MQ=255) cccccGACGCTGCAAACCACCCGCGATCCAGACAt < 1:3745814/32‑1 (MQ=255) ccccGACGCTGCAAACCACCCGCGATCCAGACAtt < 1:4073149/33‑1 (MQ=255) cccGACGCTGCAAACCACCCGCGATCCAGACAttt < 1:9522970/34‑1 (MQ=255) cccGACGCTGCAAACCACCCGCGATCCAGACAttt < 1:13961725/34‑1 (MQ=255) ccagACGCTGCAAACCACCCGCAATCCAGACAttt < 1:930642/32‑1 (MQ=37) ccGACGCTGCAAACCACCCGCGATCCAGACATTTa > 1:9805568/1‑35 (MQ=255) ccGACGCTGCAAACCACCCGCGATCCAGACATTTa > 1:10201916/1‑35 (MQ=255) ccGACGCTGCAAACCACCCGCGATCCAGACATTTa > 1:7418331/1‑35 (MQ=255) tgACGCTGCAAACCACCCGCGATCCAGACATTTAc < 1:6183880/34‑1 (MQ=255) cGACGCTGCAAACCACCCGCGATCCAGACATTTAc < 1:1585265/35‑1 (MQ=255) cGACGCTGCAAACCACCCGCGATCCAGACATTTAc > 1:14247859/1‑35 (MQ=255) cGACGCTGCAAACCACCCGCGATCCAGACATTTAc < 1:10812228/35‑1 (MQ=255) gACGCTGCAAACCACCCGCGATCCAGACATTTACg > 1:11472600/1‑35 (MQ=255) gACGCTGCAAACCACCCGCGATCCAGACATTTACg < 1:5861686/35‑1 (MQ=255) gACGCTGCAAACCACCCGCGATCCAGACATTTACg > 1:3962933/1‑35 (MQ=255) gcGCTGCAAACCACCCGCGATCCAGACATTTACGc < 1:2603917/34‑1 (MQ=255) aCGCTGCAAACCACCCGCGATCCAGACATTTACGc > 1:15228375/1‑35 (MQ=255) aCGCTGCAAACCACCCGCGATCCAGACATTTACGc < 1:1932135/35‑1 (MQ=255) aCGCTGCAAACCACCCGCGATCCAGACATTTACGc < 1:3384224/35‑1 (MQ=255) aCGCTGCAAACCACCCGCGATCCAGACATTTACGc < 1:1570760/35‑1 (MQ=255) aCGCTGCAAACCACCCGCGATCCAGACATTTACGc < 1:15765366/35‑1 (MQ=255) aCGCTGCAAACCACCCGCGATCCAGACATTTACGc > 1:3252235/1‑35 (MQ=255) cccTGCAAACCCCCCGCGATCCAGACATTTACGCt < 1:14567321/33‑1 (MQ=38) gcggCAAACCACCCGCGATCCAGACATTTACGCTa < 1:14993994/32‑1 (MQ=255) gCTGCAAACCACCCGCGATCCAGACATTTACGCTa > 1:15333135/1‑35 (MQ=255) gCTGCAAACCACCCGCGATCCAGACATTTACGCTa < 1:1642725/35‑1 (MQ=255) gCTGCAAACCACCCGCGATCCAGACATTTACACTa > 1:17690784/1‑35 (MQ=255) gggcaAACCACCCGCGcctgaccattatcaaacag < 1:6532756‑M1/33‑20 (MQ=255) cTGCAAACCACCCGCGATCCAGACATTTACGCTAt < 1:18103758/35‑1 (MQ=255) cTGCAAACCACCCGCGATCCAGACATTTACGCTAt > 1:19806178/1‑35 (MQ=255) cTGCAAACCACCCGCGATCCAGACATTTACGCTAt < 1:2325686/35‑1 (MQ=255) cTGCAAACCACCCGCGATCCAGACATTTACGCTAt > 1:1547538/1‑35 (MQ=255) tGCAAACCACCCGCGATCCAGACATTTACGCTAtt < 1:6725615/35‑1 (MQ=255) tGCAAACCACCCGCGATCCAGACATTTACGCTAtt > 1:14202161/1‑35 (MQ=255) tGCAAACCACCCGCGATCCAGACATTTACGCTAtt > 1:16499723/1‑35 (MQ=255) tGCAAACCACCCGCGATCCAGACATTTACGCTAtt > 1:4391799/1‑35 (MQ=255) ggcAAAACACCCGCGcctgaccattatcaaacaga < 1:1353760‑M1/34‑21 (MQ=255) gcgaaccaCCCGCGcctgaccattatcaaacagaa < 1:5035346‑M1/32‑22 (MQ=255) gCAAACCACCCGCGATCCTGACATTTACGCTATTg > 1:228609/1‑35 (MQ=255) gCAAACCACCCGCGATCCAGACATTTACGCTATTg < 1:14371562/35‑1 (MQ=255) gCAAACCACCCGCGATCCAGACATTTACGCTATTg < 1:172017/35‑1 (MQ=255) caaaaccACCCGCGcctgaccattatcaaacagaa < 1:17137696‑M1/33‑22 (MQ=255) cAAACCACCCGCGATCCAGACATTTACGCTATTgg < 1:14851365/35‑1 (MQ=255) cAAACCACCCGCGATCCAGACATTTACGCTATTgg > 1:17176049/1‑35 (MQ=255) cAAACCACCCGCGATCCAGACATTTACGCTATTgg < 1:12325102/35‑1 (MQ=255) aaaCCACCCGCGATCCAGACATTTACGCTATTGGc < 1:18770939/35‑1 (MQ=255) aaaCCACCCGCGATCCAGACATTTACGCTATTGGc > 1:1862604/1‑35 (MQ=255) aaaCCACCCGCGATCCAGACATTTACGCTATTGGc > 1:17066858/1‑35 (MQ=255) aaaCCACCCGCGATCCAGACATTTACGCTATTGGc < 1:19521747/35‑1 (MQ=255) aaaCCACCCGCGATCCAGACATTTACGCTATTGGc < 1:12174996/35‑1 (MQ=255) acccaccAGCGATCCAGACATTTACGATATTGGCg < 1:16601970/33‑1 (MQ=21) aaCCACCCGCGATCCAGACATTTACGCTATTGGCg > 1:1994595/1‑35 (MQ=255) accaccCGCGATCCAGACATTTACGCTATTGGCGa > 1:3712384/1‑35 (MQ=255) accaccCGCGATCCAGACATTTACGCTATTGGCGa > 1:7438176/1‑35 (MQ=255) ccaccCGCGcctgaccattatcaaacagaacttct < 1:10148562‑M1/35‑27 (MQ=255) ccaccCGCGATCCAGACATTTACGCTATTGGCGaa > 1:20479905/1‑34 (MQ=255) caccCGCGcctgaccattatcaaacagaacttctg < 1:15791783‑M1/35‑28 (MQ=255) caccCGCGATCCAGACATTTACGCTATTGGCGACt < 1:16248142/35‑1 (MQ=255) caccCGCGATCCAGACATTTACGCTATTGGCGACt < 1:7690429/35‑1 (MQ=255) accCGCGcctgaccattatcaaacagaacttctgg < 1:10546972‑M1/35‑29 (MQ=255) accCGCGcctgaccattatcaaacagaacttctgg < 1:17719599‑M1/35‑29 (MQ=255) accCGCGATCCAGACATTTACGCTATTGGCGaacg > 1:16426477/1‑32 (MQ=255) cccGGGATCCAGACATTTACGCTATTGGCGACTgc < 1:8703871/35‑1 (MQ=255) cccGCGcctgaccattatcaaacagaacttctggt < 1:8525138‑M1/35‑30 (MQ=255) cccGCGcctgaccattatcaaacagaacttctggt < 1:4962095‑M1/35‑30 (MQ=255) cccGCGcctgaccattatcaaacagaaattctggt < 1:8561052‑M1/35‑30 (MQ=255) cccGCGATCCAGACATTTACGCTATTGGCGACTgc < 1:13427168/35‑1 (MQ=255) ccGCGcctgaccattatcaaacagaacttctggta < 1:8862396‑M1/35‑31 (MQ=255) ccGCGcctgaccattatcaaacagaacttctggta < 1:17786542‑M1/35‑31 (MQ=255) ccGCGcctgaccattatcaaacagaacttctggta < 1:13268672‑M1/35‑31 (MQ=255) cgcgcctgaccattatcaaacagaacttctggtaa < 1:19777637‑M1/35‑32 (MQ=255) cgcgATCCAGACATTTACGCTATTGGCGACTgcgc < 1:19485808/35‑1 (MQ=255) cgcgATCCAGACATTTACGCTATTGGCGACTgcgc < 1:15485820/35‑1 (MQ=255) cgcgATCCAGACATTTACGCTATTGGCGACTgcgc < 1:12728746/35‑1 (MQ=255) cgcgATCCAGACATTTACGCTATTGGCGACTgcgc < 1:3640838/35‑1 (MQ=255) gcgcctgaccattatcaaacagaacttctggtaac > 1:12120814‑M1/1‑3 (MQ=255) gcgcctgaccattatcaaacagaacttctggtaac < 1:10687953‑M1/35‑33 (MQ=255) gcgATCCAGACATTTACGCTATTGGCGACTGcgcg < 1:14556259/35‑1 (MQ=255) gcgATCCAGACATTTACGCTATTGGCGACTGcgcg > 1:16134692/1‑35 (MQ=255) cgcctgaccattatcaaacagaacttctggtaaca > 1:9441348‑M1/1‑2 (MQ=255) cgcctgaccattatcaaacagaacttctggtaaca < 1:17954251‑M1/35‑34 (MQ=255) cgcctgaccattatcaaacagaacttctggtaaca > 1:7817113‑M1/1‑2 (MQ=255) cgcctgaccattatcaaacagaacttctggtaaca > 1:15295502‑M1/1‑2 (MQ=255) cgATCCAGACATTTACGCTATTGGCGACTGCGCGt < 1:18873716/35‑1 (MQ=255) gcctgaccattatcaaacagaacttctggtaacag > 1:15706322‑M1/1‑1 (MQ=255) gATCCAGACATTTACGCTATTGGCGACTGCGCGTc < 1:18184943/35‑1 (MQ=255) gATCCAGACATTTACGCTATTGGCGACTGCGCGTc < 1:13779934/35‑1 (MQ=255) | CTGGTGGTGGAACCGACGCTGCAAACCACCCGCGATCCAGACATTTACGCTATTGGCGACTGCGCGTC > REL606/1181547‑1181614 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |