New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2216192 = | 62 (0.600) | 25 (0.310) | 6/38 | NT | 27.2% | coding (1142/1182 nt) | setB | lactose/glucose efflux system |
? | REL606 | = 3911582 | 85 (1.040) | coding (218/1551 nt) | yifB | predicted bifunctional enzyme and transcriptional regulator |
AAACATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2216230‑2216192 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaAAAAAATCACCATCAACCTGGCTCCAGCTGATCT < REL606/3911582‑3911549 AAACATCTTTAATCCGCAGTAAGCAAAACAGAGTG < 1:16909315/35‑1 AAACATCTTTAATCCGCAGTAAGCAAAACAGAGTG < 1:9588838/35‑1 AAACATCTTTAATCCGCAGTAAGCAAAACAGAGTG < 1:18030866/35‑1 AAACATCTTTAATCCGCAGTAAGCAAAACAGAGTG > 1:13203944/1‑35 AACATCTTTAATCCGCAGTAAGCAAAACAGAGTGG > 1:18474066/1‑35 AACATCTTTAATCCGCAGTAAGCAAAACAGAGTGG < 1:522112/35‑1 AACATCTTTAATCCGCAGTAAGCAAAACAGAGTGG > 1:1918479/1‑35 AACATCTTTAATCCGCAGTAAGCAAAACAGAGTGG < 1:15851274/35‑1 ACATCTTTAATCCGCAGTAAGCAAAACAGAGTGGC < 1:7958815/35‑1 ACATCTTTAATCCGCAGTAAGCAAAACAGAGTGGC < 1:13946789/35‑1 CATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCG > 1:20027035/1‑35 CATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCG < 1:14094510/35‑1 CATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCG < 1:8063972/35‑1 CATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCG > 1:7058862/1‑35 CATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCG < 1:19683063/35‑1 ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA < 1:15679635/35‑1 ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA > 1:19886845/1‑35 ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA > 1:14973679/1‑35 ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA < 1:20131815/35‑1 ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA < 1:7128098/35‑1 ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA < 1:2880224/35‑1 ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA > 1:11984658/1‑35 ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA > 1:18539506/1‑35 TCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGAA > 1:17200352/1‑35 TCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGAA > 1:19235242/1‑35 TCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGAA > 1:8113712/1‑35 TCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGAA > 1:2383593/1‑35 TTTAATCCGCAGTAAGCAAAACAGAGTGGCGAAAA > 1:6573019/1‑35 TTAATCCGCAGTAAGCAAAACAGAGTGGCGAAAAA > 1:5869292/1‑35 TAATCCGCAGTAAGCAAAACAGAGTGGCGAAAAtt > 1:3961997/1‑33 TAATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAA > 1:17257692/1‑35 TAATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAA > 1:7332158/1‑35 AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA > 1:3697724/1‑35 AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA > 1:6042406/1‑35 AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA > 1:17928626/1‑35 AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA > 1:12005343/1‑35 AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA > 1:1707813/1‑35 AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA > 1:12332625/1‑35 AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA > 1:13833679/1‑35 ATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAAa > 1:4482243/1‑34 ATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAAa > 1:13095058/1‑34 ATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAAT > 1:2931501/1‑35 CCGCAGTAAGCAAAACAGAGTGGCGAAAAAACTCc > 1:558547/1‑34 CCGCAGTAAGCAAAACAGAGTGGCGAAAAAAAACA > 1:3042381/1‑35 CCGCAGTAAGCAAAACAGAGTGGCGAAAAAAAACA > 1:2362885/1‑35 CGCAGTAAGCAAAACAGAGTGGCGAAAAAAATCAa > 1:10836002/1‑34 CGCAGTAAGCAAAACAGAGTGGCGAAAAAAAACAC > 1:5396241/1‑35 CGCAGTAAGCAAAACAGAGTGGCGAAAAAAAACAC > 1:4687927/1‑35 GCAGTAAGCAAAACAGAGTGGCGAAAAAAATAACC > 1:13791963/1‑35 GCAGTAAGCAAAACAGAGTGGCGAAAAAAAACACC > 1:5308582/1‑35 GCAGTAAGCAAAACAGAGTGGCGAAAAAAAACACC > 1:13756707/1‑35 GCAGTAAGCAAAACAGAGTGGCGAAAAAAAACACC > 1:5354516/1‑35 CAGTAAGCAAAACAGAGTGGCGAAAAAAATTACCA > 1:996692/1‑35 CAGTAAGCAAAACAGAGTGGCGAAAAAAATCACCA > 1:8035095/1‑35 AGTAAGCAAAACAGAGTGGCGAAAAACATCACCAa > 1:1376070/1‑34 AGTAAGCAAAACAGAGTGGCGAAAAAAATAACCAc > 1:4978654/1‑34 AGTAAGCAAAACAGAGTGGCGAAAAAAATAACCAc > 1:5623273/1‑34 GGCGAAAAAAATCACCATCAACCTGGCTCCAGCTG > 1:9277491/1‑35 GGCGAAAAAAATCACCATCAACCTGGCTCCAGCTG < 1:8585542/35‑1 GGCGAAAAAAATCACCATCAACCTGGCTCCAGCTG > 1:15505987/1‑35 GGCGAAAAAAATCACCATCAACCTGGCTCCAGCTG > 1:7198397/1‑35 GGCGAAAAAAATCACCATCAACCTGGCTCCAGCTG > 1:19561998/1‑35 GGCGAAAAAAATCACCATCAACCTGGCTCCAGCTG < 1:6427056/35‑1 GCGAAAAAAATCACCATCGACCTGGCTCCAGCTGA > 1:12200317/1‑35 GCGAAAAAAATCACCATCAACCTGGCTCCAGCTGA > 1:5919155/1‑35 GCGAAAAAAATCACCATCAACCTGGCTCCAGCTGA > 1:2312938/1‑35 GCGAAAAAAATCACAATCAACCTGGCTCCAGCTGA < 1:16643655/35‑1 CGAAAAAAATCACCATCAACCTGGCTCCAGCTGAT > 1:4362125/1‑35 CGAAAAAAATCACCATCAACCTGGCTCCAGCTGAT < 1:7322589/35‑1 CGAAAAAAATCACCATCAACCTGGCTCCAGCTGAT < 1:18435123/35‑1 CGAAAAAAATCACCATCAACCTGGCTCCAGCTGAT < 1:17937059/35‑1 GAAAAAAATCACCATCAACCTGGCTCCAGCTGATC > 1:797215/1‑35 GAAAAAAATCACCATCAACCTGGCTCCAGCTGATC > 1:12297785/1‑35 GAAAAAAATCACCATCAACCTGGCTCCAGCTGATC < 1:14722426/35‑1 GAAAAAAATCACCATCAACCTGGCTCCAGCTGATC < 1:8530959/35‑1 GAAAAAAATCACCATCAACCTGGCTCCAGATGATC < 1:18204689/35‑1 AAAAAAATCGCCATCAACCTGGCTCCAGCTGATCT < 1:19773184/35‑1 AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT > 1:10695383/1‑35 AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT < 1:964487/35‑1 AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT < 1:12313113/35‑1 AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT > 1:14402591/1‑35 AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT < 1:8050893/35‑1 AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT > 1:3169764/1‑35 AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT < 1:6011967/35‑1 AAACATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2216230‑2216192 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaAAAAAATCACCATCAACCTGGCTCCAGCTGATCT < REL606/3911582‑3911549 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |