New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422594 =77 (0.750)21 (0.220) 7/44 NT 23.0% intergenic (‑281/+181) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter
?REL606 = 3721305 76 (0.740)coding (669/1191 nt) lldD L‑lactate dehydrogenase, FMN‑linked

Only 100 of 161 total aligned reads displayed.

GCAAACCGACCGGACTGGAAGATTACATCGGCTGGCTGGGGAATAACTTCGATCCGTCCATCTCATGGA  >  REL606/3721271‑3721339
                                  |                                  
gCAAACCGGCCGGACTGGAAGATTACATCggctgg                                    <  1:15994254/35‑1 (MQ=255)
gCAAACCGACCGGACTGGAAGATTACATCggctgg                                    <  1:7360754/35‑1 (MQ=255)
 cAAACCGACCGGACTGGAAGATTACATCggctggc                                   <  1:14297767/35‑1 (MQ=255)
  aaaCCGACCGGACTGGAAGATTACATCggctggct                                  <  1:9477678/35‑1 (MQ=255)
  aaaCCGACCGGACTGGAAGATTACATCGGCTGGgg                                  <  1:7749575‑M2/35‑3 (MQ=255)
  aaaCCGACCGGACTGGAAGATTACATCGGCTGGgg                                  <  1:7409213‑M2/35‑3 (MQ=255)
  aaaCCGACCGGACTGGAAGATTACATCGGCTGGgg                                  <  1:6995359‑M2/35‑3 (MQ=255)
   acccgaccgGACTGGAAGATTACATCGgctggctg                                 <  1:6015966/33‑1 (MQ=255)
   acccgaccgGACTGGAAGATTACATCGgctggctg                                 <  1:10149640/33‑1 (MQ=255)
   acccgaccgGACTGGAAGATTACATCGgctggctg                                 <  1:4501187/33‑1 (MQ=255)
   aaCCGACCGGACTGGAAGATTACATCGgctggctg                                 <  1:13567915/35‑1 (MQ=255)
    accgaccgGACTGTAAGATTACATCGGCTGGgggg                                <  1:16229267‑M2/35‑5 (MQ=255)
    accgaccgGACTGGGAGATTACATCGGCTGGgggg                                <  1:19098206‑M2/35‑5 (MQ=255)
    accgaccgGACTGGAAGATTACATCGGctggctgg                                <  1:1844168/35‑1 (MQ=255)
    accgaccgGACTGGAAGATTACATCGGctggctgg                                <  1:7479740/35‑1 (MQ=255)
     ccgaccgGACTGGAAGATTACATCGGCTGGgtggg                               <  1:18972094‑M2/35‑6 (MQ=255)
     ccgaccgGACTGGAAGATTACATCGGCTGGCTggg                               <  1:530528/35‑1 (MQ=255)
      cgaccgGACTGGAAGATTACATCGGCTGGgggggg                              <  1:3488904‑M2/35‑7 (MQ=255)
      cgaccgGACTGGAAGATTACATCGGCTGGgggggg                              <  1:16872806‑M2/35‑7 (MQ=255)
      cgaccgGACTGGAAGATTACATCGGCTGGCTgggg                              <  1:9820710/35‑1 (MQ=255)
       gagcgGACTGGAAGATTACATCGGCTGGCTGGGGa                             <  1:15967358/32‑1 (MQ=255)
       gaccgGACTGGAAGATTACATCGGCTGGggggggg                             <  1:10077958‑M2/35‑8 (MQ=255)
       gaccgGACTGGAAGATTACATCGGCTGGggggggg                             <  1:1625819‑M2/35‑8 (MQ=255)
       gaccgGACTGGAAGATTACATCGGCTGGggggggg                             <  1:5169051‑M2/35‑8 (MQ=255)
       gaccgGACTGGAAGATTACATCGGCTGGggggggg                             <  1:13580606‑M2/35‑8 (MQ=255)
       gaccgGACTGGAAGATTACATCGGCTGGCTGGGGa                             <  1:10922841/35‑1 (MQ=255)
        accgGACTGGAAGATTACATCGGCTGGgggggggg                            <  1:4258475‑M2/35‑9 (MQ=255)
        accgGACTGGAAGATTACATCGGCTGGgggggggg                            <  1:4534102‑M2/35‑9 (MQ=255)
         ccgGACTGGAAGATTACATCGGCTGGggggggggg                           <  1:18230304‑M2/35‑10 (MQ=255)
         ccgGACTGGAAGATTACATCGGCTGGgcggggggg                           <  1:2384379‑M2/35‑10 (MQ=255)
         ccgGACTGGAAGATTACATCGGCTGGCTGGGGAAt                           <  1:5907035/35‑1 (MQ=255)
          cgGACTGGAAGATTACATCGGCTGGggggggggca                          <  1:5192345‑M2/35‑11 (MQ=255)
           ggACTGGAAGATTACATCGGCTGGgggggggggaa                         <  1:18478216‑M2/35‑12 (MQ=255)
           ggACTGGAAGATTACATCGGCTGGgggggggggaa                         <  1:11784737‑M2/35‑12 (MQ=255)
            gACTGGAAGATTACATCGGCTGGgtgggggggaaa                        <  1:12207830‑M2/35‑13 (MQ=255)
            gACTGGAAGATTACATCGGCTGGgggggggggaaa                        <  1:18016465‑M2/35‑13 (MQ=255)
            gACTGGAAGATTACATCGGCTGGCTGGGGAATAAc                        <  1:15527309/35‑1 (MQ=255)
            gACTGGAAGATTACATCGGCTGGCTGGGGAATAAc                        <  1:6410208/35‑1 (MQ=255)
             aCTGGAAGATTCCATCGGCTGGCTGGGGAATAACt                       <  1:2532215/35‑1 (MQ=255)
             aCTGGAAGATTACATCGGCTGGgggggggggaaaa                       <  1:4658852‑M2/35‑14 (MQ=255)
             aCTGGAAGATTACATCGGCTGGCTGGGGAATAACt                       <  1:1058163/35‑1 (MQ=255)
              cTGGAAGATTACATCGGCTGGCTGGGGAATAACtt                      <  1:13002724/35‑1 (MQ=255)
              cTGGAAGATTACATCGGCTGGCTGGGGAATAACtt                      <  1:4245119/35‑1 (MQ=255)
              atGGAAGATTACATCGGCTGGCTGGGGAATAACtt                      <  1:6544212/34‑1 (MQ=255)
               tctaaGATTACATCGGCTGGCTGGGGAATAACTTc                     <  1:9788295/32‑1 (MQ=255)
               tGGGAGATTACATCGGCTGGCTGGGGAATAACTTc                     <  1:3962295/35‑1 (MQ=255)
                ggAAGATTACATCGGCTGGGGGGGGGAGAAATTCg                    >  1:6908663/1‑35 (MQ=12)
                ggAAGATTACATCGGCTGGCTGGGGAATAACTTCg                    <  1:9948011/35‑1 (MQ=255)
                 gAAGATTACATCGGCTGGCTGGGGAATAACTTCGa                   <  1:18498916/35‑1 (MQ=255)
                 gAAGATTACATCGGCTGGCTGGGGAATAACTTCGa                   <  1:11669002/35‑1 (MQ=255)
                 gAAGATTACATCGGCTGGCTGGGGAATAACTTCGa                   <  1:13135552/35‑1 (MQ=255)
                  aaGATTCCATCGGCTGGCTGGGGAATAACTTCGAt                  <  1:10504162/35‑1 (MQ=255)
                  aaGATTACATCGGCTGGCTGGGGAATAACTTCGAt                  <  1:12330152/35‑1 (MQ=255)
                  aaGATTACATCGGCTGGCTGGGGAATAACTTCGAt                  <  1:9583183/35‑1 (MQ=255)
                  aaGATTACATCGGCTGGCTGGGGAATAACTTCGAt                  <  1:6786914/35‑1 (MQ=255)
                  aaGATTACATCGGCTGGCTGGGGAATAACTTCGAt                  <  1:14505124/35‑1 (MQ=255)
                  aaGATTACATCGGCTGGCTGGGGAATAACTTCGAt                  <  1:8487149/35‑1 (MQ=255)
                   aGATTACATCGGCTGGCTGGGGAATAACTTCGATc                 <  1:6327729/35‑1 (MQ=255)
                   aGATTACATCGGCTGGCTGGGGAATAACTTCGATc                 <  1:8655354/35‑1 (MQ=255)
                   aGATAACATCGGCTGGCTGGGGAATAACTTCGATc                 <  1:12988936/35‑1 (MQ=255)
                     aTTACATCGGCTGGCTGGGGAATAACTTCGATCCg               <  1:3655490/35‑1 (MQ=255)
                     aTTACATCGGCTGGCTGGGGAATAACTTCGATCCg               <  1:4937018/35‑1 (MQ=255)
                      ttgcATCGGCTGGCTGGGGAATAACTTCGATCCGt              <  1:12348010/32‑1 (MQ=255)
                      ttccATCGGCTGGCTGGGGAATAACTTCGATCCGt              <  1:9147572/32‑1 (MQ=255)
                      ttccATCGGCTGGCTGGGGAATAACTTCGATCCGt              <  1:14774911/32‑1 (MQ=255)
                      ttACATCGGCTGGCTGGGGAATAACTTCGATCCGt              <  1:14102785/35‑1 (MQ=255)
                      ttACATCGGCTGGCTGGGGAATAACTTCGATCCGt              <  1:16470918/35‑1 (MQ=255)
                       tACATCGGCTGGCTGGGGAATAACTTCGATCCGTc             <  1:504094/35‑1 (MQ=255)
                        aCATCGGCTGGCTGGGGAATAACTTCGATCCGTcc            <  1:2179778/35‑1 (MQ=255)
                        aCATCGGCTGGCTGGGGAATAACTTCGATCCGTcc            <  1:11946894/35‑1 (MQ=255)
                         cATCGGCTGGCTGGGGAATAACTTCGATCCGTCCa           <  1:3161809/35‑1 (MQ=255)
                          aTCGGCTGGCTGGGGAATAACTTCGATCCGTCCAt          <  1:15502034/35‑1 (MQ=255)
                          aTCGGCTGGCTGGGGAATAACTTCGATACGTCCAt          <  1:4002200/35‑1 (MQ=255)
                           tCGGCTGGCTGGGGAATAACTTCGATCCGTCCAtc         <  1:5861836/35‑1 (MQ=255)
                            cGGCTGGCTGGGGAATAACTTCGATCCGTCCAtct        <  1:11238845/35‑1 (MQ=255)
                            cGGCTGGCTGGGGAATAACTTCGATCCGTCCAtct        <  1:3929431/35‑1 (MQ=255)
                            cGGCTGGCTGGGGAATAACTTCGATCCGTCCAtct        <  1:2623677/35‑1 (MQ=255)
                             ggctggctGGGGAATAACTTCGATCCGTCCAtctc       <  1:13353849/35‑1 (MQ=255)
                             ggctggctGGGGAATAACTTCGATCCGTCCAtctc       >  1:9726988/1‑35 (MQ=255)
                              gctggctgGGGAATAACTTCGATCCGTCCATCTCa      <  1:7791715/35‑1 (MQ=255)
                              gctggctgGGGAATAACTTCGATCCGTCCATCTCa      <  1:13382669/35‑1 (MQ=255)
                               ctggctggGGAATAACTTCGATCCGTCCAtctcct     >  1:15151100/1‑33 (MQ=255)
                               ctggctggGGAATAACTTCGATCCGTCCATCTCAt     >  1:9613409/1‑35 (MQ=255)
                               ctggctggGGAATAACTTCGATCCGTCCATCTCAt     >  1:14577116/1‑35 (MQ=255)
                               ctggctggGGAATAACTTCGATCCGTCCATCTCAt     <  1:397328/35‑1 (MQ=255)
                               ctggctggGGAATAACTTCGATCCGTCCATCTCAt     <  1:2916183/35‑1 (MQ=255)
                               ctggctggGGAATAACTTCGATCCGTCCATCTCAt     <  1:17951714/35‑1 (MQ=255)
                               ctggctggGGAATAACTTCGATCCGTCCATCTCAt     >  1:18076842/1‑35 (MQ=255)
                               ctggctggGGAATAACTTCGATCCGTCCATATCAt     <  1:11093144/35‑1 (MQ=255)
                                tggctggGGAATAACTTCGATCCGTCCATCTCATg    >  1:12718793/1‑35 (MQ=255)
                                tggctggGGAATAACTTCGATCCGTCCATCTCATg    >  1:16045086/1‑35 (MQ=255)
                                tggctggGGAATAACTTCGATCCGTCCATCTCATg    >  1:12039814/1‑35 (MQ=255)
                                tggctggGGAATAACTTCGATCCGTCCATCTCATg    <  1:16569512/35‑1 (MQ=255)
                                tggctggGGAATAACTTCGATCCGTCCATCTCATg    >  1:17767410/1‑35 (MQ=255)
                                tggctggGGAATAACTTCGATCCGTCCATCTCATg    >  1:9223510/1‑35 (MQ=255)
                                tggctggGGAATAACTTCGATCCGTCCATCTCATg    <  1:18320798/35‑1 (MQ=255)
                                 ggctggGGAATAACTTCGATCCGTCCATCTCATgg   >  1:19736504/1‑35 (MQ=255)
                                 ggctggGGAATAACTTCGATCCGTCCATCTCATgg   >  1:2311630/1‑35 (MQ=255)
                                  gctggGGAATAACTTCGATCCGTCCATCTCATGGa  >  1:6013838/1‑35 (MQ=255)
                                  gctggGGAATAACTTCGATCCGTCCATCTCATGGa  <  1:17735917/35‑1 (MQ=255)
                                  |                                  
GCAAACCGACCGGACTGGAAGATTACATCGGCTGGCTGGGGAATAACTTCGATCCGTCCATCTCATGGA  >  REL606/3721271‑3721339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.