New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 197679 = | 131 (1.270) | 16 (0.200) | 5/38 | NT | 15.6% | intergenic (+120/‑66) | ispC/uppS | 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase/undecaprenyl pyrophosphate synthase |
? | REL606 | 2304413 = | 69 (0.850) | coding (802/903 nt) | yfaD | hypothetical protein |
CGGTACTCAGGAATACTGAAGCCTATACAAAAAAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/197717‑197679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT > REL606/2304413‑2304446 CGGTACTCAGGAATACTGAAGCCTATACAAAAAAA > 1:7166545/1‑35 CGGTACTCAGGAATACTGAAGCCTATACAAAAAAA > 1:8995270/1‑35 CGGTACTCAGGAATACTAAAGCCTATACAAAAAAA < 1:19833169/35‑1 GGTACTCAGGAATACTGAAGCCTATACAAAAAAAA > 1:947479/1‑35 GGTACTCAGGAATACTGAAGCCTATACAAAAAAAA > 1:16623149/1‑35 GGTACTCAGGAATACTGAAGCCTATACAAAAAAAA > 1:11012390/1‑35 GGTACTCAGGAATACTGAAGCCTATACAAAAAAAA < 1:16740081/35‑1 GTACTCAGGAATACTGAAGCCTATACAAAAAAAAN > 1:7233443/1‑35 GTACTCAGGAATACTGAAGCCTATACAAAAAAAAG < 1:8773207/35‑1 GTACTCAGGAATACTGAAGCCTATACAAAAAAAAG > 1:8768323/1‑35 TACTCAGGAATACTGAAGCCTATACAAAAAAAAGC > 1:7185255/1‑35 TACTCAGGAATACTGAAGCCTATACAAAAAAAAGC > 1:7490338/1‑35 TACTCAGGAATACTGAAGCCTATACAAAAAAAAGC < 1:14439403/35‑1 TACTCAGGAATACTGAAGCCTATACAAAAAAAAGC > 1:12320324/1‑35 TACTCAGGAATACTGAAGCCTATACAAAAAAAAGC > 1:17074341/1‑35 TACTCAGGAATACTAAAGCCTATACAAAAAAAAGC < 1:1116596/35‑1 TACTAAGGAATACTGAAGCCTATACAAAAAAAAGC < 1:12687403/35‑1 ACTCAGGAATACTGAAGCCTATACAAAAAAAAGCC > 1:7861249/1‑35 ACTCAGGAATACTGAAGCCTATACAAAAAAAAGCC > 1:3505078/1‑35 ACTCAGGAATACTGAAGCCTATACAAAAAAAAGCC > 1:3096875/1‑35 gTATGCAAAAAAAAGCCATTAAAATTGCTTTGCGC < 1:5762618/34‑1 TATGCAAAAAAAAGCCATTAAAATTGCTTTGCGCA < 1:16130143/35‑1 TATGCAAAAAAAAGCCATTAAAATTGCTTTGCGCA < 1:9571695/35‑1 atgCAAAAAAAAGCCATTAAAATTGCTTTGCGCAT < 1:1939286/32‑1 tgaAAAAAAAAGCCATTAAAATTGCTTTGCGCATG < 1:15233189/32‑1 tgCAAAAAAAAGCCATTAAAATTGCTTTGCGCATG < 1:493945/33‑1 TACAAAAAAAAGCCATTAAAATTGCTTTGCGCATG < 1:56390/35‑1 ACAAAAAAAAGCCATTAAAATTGCTTTGCGCATGC < 1:3325174/35‑1 catAAAAAAGCCATTAAAATTGCTTTGCGCATGCT < 1:9926192/32‑1 aAAAAAAAAGCCATTAAAATTGCTTTGCGCATGCT < 1:7131981/34‑1 CAAGAAAAAGCCATTAAAATTGCTTTGCGCATGCT < 1:1576256/35‑1 CAAGAAAAAGCCATTAAAATTGCTTTGCGCATGCT < 1:2700574/35‑1 CAAAAAAAAGCCATTAAAATTGCTTTGCGCATGCT < 1:1055887/35‑1 atAAAAAAGCCATTAAAATTGCTTTGCGCATGCTG < 1:19068129/33‑1 AAAAAAAAGCCATTAAAATTGCTTTGCGCATGCTG < 1:14318262/35‑1 AAAAAAAAGCCATTAAAATTGCTTTGCGCATGCTG < 1:19946854/35‑1 AAAAAAAAGCCATTAAAATTGCTTTGCGCATGCTG < 1:13410027/35‑1 AAAAAAAAGCCATTAAAATTGCTTTGCGCATGCTG < 1:881478/35‑1 AAAAAAAGCCATTAAAATTGCTTTGCGCATGCTGG < 1:566140/35‑1 gAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGA < 1:2356368/34‑1 AAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGA < 1:3211537/35‑1 AAAAAAGCCATTAAAATTGCTTTGCGCATGCTGGA < 1:15249443/35‑1 AAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAA < 1:14206558/35‑1 AAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAA < 1:7450172/35‑1 AAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAA < 1:10446970/35‑1 AAAAAGCCATTAAAATTGCTTTGCGCATGCTGGAA < 1:6263576/35‑1 AAAAGCCATTAAAATTGCTTTGCGCATGCTGGAAC < 1:8132584/35‑1 AAAAGCCATTAAAATTGCTTTGCGCATGCTGGAAC < 1:10373714/35‑1 AAAGCCATTAAAATTGCTTTGCGCATGCTGGAACA < 1:17197062/35‑1 AAAGCCATTAAAATTGCTTTGCGCATGCTGGAACA < 1:8240542/35‑1 AAAGCCATTAAAATTGCTTTGCGCATGCTGGAACA < 1:14531123/35‑1 AAAGCCATTAAAATTGCTTTGCGCATGCTGGAACA < 1:5125465/35‑1 AAAGCCATTAAAATTGCTTTGCGCATGCTGGAACA < 1:9480672/35‑1 AAGCCATTAAAATTGCTTTGCGCATGCTGGAACAG < 1:10651958/35‑1 AAGCCATTAAAATTGCTTTGCGCATGCTGGAACAG < 1:8802555/35‑1 AAGCCATTAAAATTGCTTTGCGCATGCTGGAACAG > 1:11349645/1‑35 AAGCCATTAAAATTGCTTTGCGCATGCTGGAACAG > 1:4587283/1‑35 AAGCCATTAAAATTGCTTTGCGCATGCTGGAACAG < 1:20278790/35‑1 AAGCCATTAAAATTGCTTTGCGCATGCTGGAACAG < 1:5698664/35‑1 AGCCATTAAAATTGCTTTTCGCATGCTGGAACAGG > 1:6984188/1‑35 AGCCATTAAAATTGCTTTGCGCATGCTGGAACAGG > 1:5605454/1‑35 AGCCATTAAAATTGCTTTGCGCATGCTGGAACAGG > 1:8286060/1‑35 GCCATTAAAATTGCTTTGCGCATGCTGGAACAGGG < 1:6987158/35‑1 GCCATTAAAATTGCTTTGCGCATGCTGGAACAGGG < 1:6812338/35‑1 GCCATTAAAATTGCTTTGCGCATGCTGGAACAGGG > 1:20411134/1‑35 GCCATTAAAATTGCTTTGCGCATGCTGGAACAGGG > 1:8682091/1‑35 CCATTAAAATTTCTTTGCGCATGCTGGAACAGGGC > 1:17361915/1‑35 CCATTAAAATTGCTTTGCGCATGCTGGAACAGGGC < 1:18195132/35‑1 CCATTAAAATTGCTTTGCGCATGCTGGAACAGGGC < 1:9426481/35‑1 CCATTAAAATTGCTTTGCGCATGCTGGAACAGGGC > 1:6700650/1‑35 CCATTAAAATTGCTTTGCGCATGCTGGAACAGGGC > 1:8436387/1‑35 CCATTAAAATTGCTTTGCGCATGCTGGAACAGGGC > 1:11605526/1‑35 CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT > 1:10196631/1‑35 CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT > 1:11291901/1‑35 CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT < 1:7515625/35‑1 CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT > 1:15056724/1‑35 CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT < 1:15742561/35‑1 CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT < 1:16235733/35‑1 CATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT > 1:6529238/1‑35 CGGTACTCAGGAATACTGAAGCCTATACAAAAAAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/197717‑197679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccATTAAAATTGCTTTGCGCATGCTGGAACAGGGCT > REL606/2304413‑2304446 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |