New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2318764 =63 (0.610)11 (0.140) 4/36 NT 13.6% coding (1344/1653 nt) arnT 4‑amino‑4‑deoxy‑L‑arabinose transferase
?REL606 4219145 = 92 (1.190)intergenic (+483/‑112) yjbH/yjbA predicted porin/phosphate‑starvation‑inducible protein PsiE

Only 100 of 192 total aligned reads displayed.

GCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAA  >  REL606/4219111‑4219179
                                  |                                  
gCTTATCCGGCCTACGGGTAGGTATATCGGGCttt                                    <  1:912147/35‑1 (MQ=255)
 acaccgacgctatcagtaagaatatagcggctttg                                   >  1:12354676‑M2/34‑35 (MQ=255)
 acaccgacgctatcagtaagaatatagcggctttg                                   >  1:6011958‑M2/34‑35 (MQ=255)
  ttATCCGGCCTACGGGTAGGTATATCCGGCTTtgg                                  >  1:10794713/1‑35 (MQ=255)
  ttATCCGGCCTACGGGTAGGTATATCCGGCTTtgg                                  <  1:3201090/35‑1 (MQ=255)
  ttATCCGGCCTACGGGTAGGTATATCCGGCTTtgg                                  <  1:15931212/35‑1 (MQ=255)
  ttATCCGGCCTACGGGTAGGTATATCCGGCTTtgg                                  <  1:12690207/35‑1 (MQ=255)
   tATCCGGCCTACGGGTAGGTATATCCGGCTTtggt                                 >  1:975689/1‑35 (MQ=255)
   tATCCGGCCTACGGGTAGGTATATCCGGCTTtggt                                 <  1:13450341/35‑1 (MQ=255)
   tATCAGGCCTACGGGTAGGTATATCCGGCTTtggt                                 <  1:18118629/35‑1 (MQ=255)
    aTCCTGCCTACGGGTAGGTATATCCGGCTTtggtg                                >  1:2911051/1‑35 (MQ=255)
    aTCCGGCCTACGGGTAGGTATATCCGGCTTtggtg                                >  1:2606814/1‑35 (MQ=255)
    aTCCGGCCTACGGGTAGGTATATCCGGCTTtggtg                                >  1:317249/1‑35 (MQ=255)
    aTCCGGCCTACGGGTAGGTATATCCGGCTTtggtg                                <  1:11947301/35‑1 (MQ=255)
     tCCGGCCTACGGGTAGGTATATCCGGCTTtggtgg                               <  1:15374563/35‑1 (MQ=255)
     tCCGGCCTACGGGTAGGTATATCCGGCTTtggtgg                               <  1:5331384/35‑1 (MQ=255)
     cgacgctatcagtaagaatatagcgggtttggtgg                               >  1:19546542‑M2/30‑35 (MQ=255)
      gacgctatcagtaagaatatagcggcttTGGTGGa                              >  1:7292516‑M2/29‑35 (MQ=255)
      gacgctatcagtaagaatatagcggcttTGGTGGa                              >  1:4154382‑M2/29‑35 (MQ=255)
      gacgctatcagtaagaatatagcggcttTGCTGGa                              >  1:11087364‑M2/29‑35 (MQ=255)
      ccGGCCTACGGGTAGGTATATCCGGCTTTGGTGGa                              >  1:19348715/1‑35 (MQ=255)
      ccGGCCTACGGGTAGGTATATCCGGCTTTGGTGGa                              >  1:18510349/1‑35 (MQ=255)
      ccGGCCTACGGGTAGGTATATCCGGCTTTGGTGGa                              <  1:10286654/35‑1 (MQ=255)
      ccGGCCTACGGGTAGGTATATCCGGCTTTGGTGGa                              <  1:11615493/35‑1 (MQ=255)
      ccGGCCTACGGGTAGGTATATCCGGCTTTGGTGGa                              >  1:796111/1‑35 (MQ=255)
       cGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAg                             <  1:6763991/35‑1 (MQ=255)
       cGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAg                             >  1:87548/1‑35 (MQ=255)
       acgctatcagtaagaatatagcggcttTGGTTGAg                             >  1:15591315‑M2/28‑35 (MQ=255)
        ggCCTACGGGTAGGTATATCCGGCTTTGGTGGAgg                            >  1:6656900/1‑35 (MQ=255)
        ggCCTACGGGTAGGTATATCCGGCTTTGGTGGAgg                            <  1:9082233/35‑1 (MQ=255)
        ggCCTACGGGTAGGTATATCCGGCTTTGGTGGAgg                            <  1:14118195/35‑1 (MQ=255)
        ggCCTACGGGTAGGTATATCCGGCTTTGGTGGAgg                            <  1:13982124/35‑1 (MQ=255)
        cgctatcagtaagaatatagcggcttTGGTGGAgg                            >  1:4439199‑M2/27‑35 (MQ=255)
         gCCTACGGGTAGGTATATCCGGCTTTGGTGGAGgc                           >  1:134121/1‑35 (MQ=255)
         gCCTACGGGTAGGTATATCCGGCTTTGGTGGAGgc                           <  1:5115751/35‑1 (MQ=255)
         gCCTACGGGTAGGTATATCCGGCTTTGGTGGAGgc                           <  1:518212/35‑1 (MQ=255)
          ccTACGGGTAGGTATATCCGGCTTTGGTGGAGgcg                          <  1:14262944/35‑1 (MQ=255)
          ccTACGGGTAGGTATATCCGGCTTTGGTGGAGgcg                          <  1:286937/35‑1 (MQ=255)
          ccTACGGGTAGGTATATCCGGCTTTGGTGGAGgcg                          >  1:14457547/1‑35 (MQ=255)
           tatcagtaagaatatagcggcttTGGTggaggggt                         >  1:12463862‑M2/24‑32 (MQ=255)
           cTACGGGTAGGTATATCCGGCTTTGGTGGAGgcgc                         >  1:8231532/1‑35 (MQ=255)
            tACGGGTAGGTATATCCGGCTTTGGTGGAGgcgcg                        >  1:6750882/1‑35 (MQ=255)
             aCGGGTAGGTATATCCGGCTTTGGTGGAGgcgcgc                       <  1:2070306/35‑1 (MQ=255)
              cGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCt                      >  1:10276726/1‑35 (MQ=255)
              cGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCt                      >  1:19075075/1‑35 (MQ=255)
              cGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCt                      <  1:7546962/35‑1 (MQ=255)
              cGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCt                      >  1:20549001/1‑35 (MQ=255)
              cGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCt                      >  1:4587951/1‑35 (MQ=255)
              cGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCt                      <  1:18194338/35‑1 (MQ=255)
               gggTAGGTATATCCGGCTTTGGTGGAGGCGCGCTc                     >  1:5992530/1‑35 (MQ=255)
               gggTAGGTATATCCGGCTTTGGTGGAGGCGCGCTc                     >  1:16404260/1‑35 (MQ=255)
                 gtaggtaTATCCGGCTTTGGTGGAGGCGCGCTCCa                   <  1:4357727/35‑1 (MQ=255)
                 gtaggtaTATCCGGCTTTGGTGGAGGCGCGCTCCa                   >  1:3916655/1‑35 (MQ=255)
                  taggtaTATCCGGCTTTGGTGGAGGCGCGCTCCaa                  >  1:11731482/1‑35 (MQ=255)
                  taggtaTATCCGGCTTTGGTGGAGGCGCGCTCCaa                  <  1:6544752/35‑1 (MQ=255)
                  taggtaTATCCGGCTTTGGTGGAGGCGCGCTCCaa                  <  1:14457214/35‑1 (MQ=255)
                  taggtaTATCCGGCTTTGGTGGAGGCGCGCTCCaa                  >  1:16452761/1‑35 (MQ=255)
                  taggtaTATCCGGCTTTGGTGGAGGCGCGCTCAaa                  <  1:4884910/35‑1 (MQ=255)
                   aggtaTATCCGGCTTTGGTGGAGGCTCGCTCCaaa                 >  1:5023144/1‑35 (MQ=255)
                   aggtaTATCCGGCTTTGGTGGAGGCGCGCTCCaaa                 <  1:6450418/35‑1 (MQ=255)
                   aggtaTATCCGGCTTTGGTGGAGGCGCGCTCCaaa                 <  1:12722096/35‑1 (MQ=255)
                   aggtaTATCCGGCTTTGGTGGAGGCGCGCTCCaaa                 <  1:19988876/35‑1 (MQ=255)
                   aggtaTATCCGGCTTTGGTGGAGGCGCGCTCCaaa                 >  1:1497099/1‑35 (MQ=255)
                   aggtaTATCCGGCTTTGGTGGAGGCGCGCTCCaaa                 <  1:2126946/35‑1 (MQ=255)
                    ggtaTATCCGGCTTTGGTGGAGGCGCGCTCCAAAt                >  1:5453858/1‑35 (MQ=255)
                    ggtaTATCCGGCTTTGGTGGAGGCGCGCTCCAAAt                >  1:19627524/1‑35 (MQ=255)
                    ggtaTATCCGGCTTTGGTGGAGGCGCGCTCCAAAt                <  1:3839279/35‑1 (MQ=255)
                    ggtaTATCCGGCTTTGGTGGAGGCGCGCTCCAAAt                >  1:792102/1‑35 (MQ=255)
                     gtaTATCCGGCTTTGGTGGAGGCGCGCTCCAAATc               >  1:12260008/1‑35 (MQ=255)
                     gtaTATCCGGCTTTGGTGGAGGCGCGCTCCAAATc               <  1:759837/35‑1 (MQ=255)
                     gtaTATCCGGCTTTGGTGGAGGCGCGCTCCAAATc               >  1:2179805/1‑35 (MQ=255)
                     gtaTATCCGGCTTTGGTGGAGGCGCGCTCCAAATc               <  1:11020903/35‑1 (MQ=255)
                      tataTCCGGCTTTGGTGGAGGCGCGCTCCAAATcc              >  1:4227372/1‑35 (MQ=255)
                       atatCCGGCTTTGGTGGAGGCGCGCTCCAAATCCa             <  1:16092682/35‑1 (MQ=255)
                        tatCCGGCTTTGGTGGAGGCGCGCTCCAAATCCaa            <  1:11604862/35‑2 (MQ=255)
                         atCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAgg           >  1:6502948/1‑35 (MQ=255)
                         atCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAgg           <  1:6377297/35‑1 (MQ=255)
                         atCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAgg           >  1:2657342/1‑35 (MQ=255)
                         atCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAgg           <  1:4552967/35‑1 (MQ=255)
                          tCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGt          <  1:16384120/35‑1 (MQ=255)
                          tCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGt          <  1:349838/35‑1 (MQ=255)
                           ccGGCTTTGGTGGAGGCGCGCTCCCAATCCAGGtt         >  1:8627244/1‑35 (MQ=255)
                           ccGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGtt         <  1:11233501/35‑1 (MQ=255)
                           ccGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGtt         <  1:5903039/35‑1 (MQ=255)
                           ccGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGtt         <  1:6090/35‑1 (MQ=255)
                            cggcttTGGTGGAGGCGCGCTCCAAATCCAGGTTg        <  1:13522904‑M2/29‑1 (MQ=255)
                             ggcttTGGTGGAGGCGCGCTCCAAATCCAGGTTGa       <  1:9350687‑M2/30‑1 (MQ=255)
                             ggcttTGGTGGAGGCGCGCTCCAAATCCAGGTTGa       <  1:8894876‑M2/30‑1 (MQ=255)
                             ggcttTGGTGGAGGCGCGCTCCAAATCCAGGTTGa       <  1:20158730‑M2/30‑1 (MQ=255)
                             ggcttTGGTGGAGGCGCGCTCCAAATCCAGGTTGa       >  1:13189775‑M2/6‑35 (MQ=255)
                              gcttTGGTGGAGGCGCGCTCCAAATCCAGGttgca      >  1:17395955‑M2/5‑33 (MQ=255)
                              gcttTGGTGGAGGCGCGCTCCAAATCCAGGTTGaa      >  1:19189763‑M2/5‑35 (MQ=255)
                              gcttTGGTGGAGGCGCGCTCCAAATCCAGGTTGaa      >  1:951614‑M2/5‑35 (MQ=255)
                               cttTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAc     <  1:10494037‑M2/32‑1 (MQ=255)
                                ttTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACa    <  1:12931075‑M2/33‑1 (MQ=255)
                                ttTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACa    <  1:7367159‑M2/33‑1 (MQ=255)
                                ttTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACa    >  1:18797539‑M2/3‑35 (MQ=255)
                                 tTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACaa   <  1:20340048‑M2/34‑1 (MQ=255)
                                 tTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACaa   <  1:12039900‑M2/34‑1 (MQ=255)
                                  tggtggAGGCGCGCTCCAAATCCAGGTTGAACaaa  <  1:14536624/35‑1 (MQ=255)
                                  |                                  
GCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAA  >  REL606/4219111‑4219179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.