New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1095862 = | 53 (0.520) | 3 (0.050) | 3/28 | NT | 10.4% | coding (274/1509 nt) | putP | proline:sodium symporter |
? | REL606 | 1585457 = | 21 (0.350) | coding (495/666 nt) | marC | predicted transporter |
TGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCC > REL606/1585423‑1585491 | tGCGTAGGCTTCCCCACAAAATAACCGCCACCAgg > 1:16761658/1‑35 (MQ=255) gCGTAGGCTTCCCCACAAAATAACCGCCACCAGGa > 1:10448215/1‑35 (MQ=255) cGTAGGCTTCCCCACAAAATAACCGCCACCAGGaa > 1:8798399/1‑35 (MQ=255) tAGGCTTCCCCACAAAATAACCGCCACCAGGaaaa > 1:7188178/1‑35 (MQ=255) tAGGCTTCCCCACAAAATAACCGCCACCAGGaaaa > 1:5162291/1‑35 (MQ=255) atgCTTCCCCACAAAATAACCGCCACCAGGaaaaa > 1:14488756/3‑35 (MQ=255) aGGCTTCCCCACAAAATAACCGCCACCAGGaaaaa > 1:9369376/1‑35 (MQ=255) ggCTTCCCCACAAAATAACCGCCACCAGGAAAAAg > 1:16576621/1‑35 (MQ=255) gCTTCCCCACAAAATAACCGCCACCAGGAAAAAGa > 1:9339638/1‑35 (MQ=255) cTTCCCCACAAAATAACCGCCACCAGGAAAAAGAt > 1:17652683/1‑35 (MQ=255) ttCCCCACAAAATAACCGCCACCAGGAAAAAGATc > 1:16495114/1‑35 (MQ=255) ttCCCCACAAAATAACCGCCACCAGGAAAAAGATc > 1:287180/1‑35 (MQ=255) ttCCCCACAAAATAACCGCCACCAGGAAAAAGATc > 1:6634573/1‑35 (MQ=255) tCCCCACAAAATAACCGCCACCAGGAAAAAGATCa > 1:16538583/1‑35 (MQ=255) ccACAAAATAACCGCCACCAGGAAAAAGATCAgcg > 1:15964482/1‑35 (MQ=255) ccACAAAATAACCGCCACCAGGAAAAAGATCAgcg > 1:2626620/1‑35 (MQ=255) cacaAAATAACCGCCACCAGGAAAAAGATCAgcgg > 1:5074925/1‑35 (MQ=255) acaAAATAACCGCCACCAGGAAAAAGATCAgcggc > 1:11678017/1‑35 (MQ=255) caacccccccgccaccagGAAAAAGATCAgcggcg < 1:4683427‑M2/17‑1 (MQ=255) caAAATAACCGCCACCAGGAAAAAGATCAgcggcg > 1:19242872/1‑35 (MQ=255) caAAATAACCGCCACCAGGAAAAAGATCAgcggcg > 1:16479076/1‑35 (MQ=255) caAAATAACCGCCACCAGGAAAAAGATCAgcggcg > 1:4905742/1‑35 (MQ=255) caAAATAACCGCCACCAGGAAAAAGATCAgcggcg > 1:10581483/1‑35 (MQ=255) aacccccccgccaccagGAAAAAGATCAgcggcgg < 1:7920503‑M2/18‑1 (MQ=255) aaaaTAACCGCCACCAGGAAAAAGATCAgcggcgg > 1:20104199/1‑35 (MQ=255) aaaaTAACCGCCACCAGGAAAAAGATCAgcggcgg > 1:20440634/1‑35 (MQ=255) acccccccgccaccagGAAAAAGATCAgcggcggc < 1:8492430‑M2/19‑1 (MQ=255) aaaTAACCGCCACCAGGAAAAAGATCAgcggcggg > 1:9665850/1‑34 (MQ=255) aaaTAACCGCCACCAGGAAAAAGATCAgcggcggc > 1:2568527/1‑35 (MQ=255) cccccccgccaccagGAAAAAGATCAgcggcggcg < 1:8565600‑M2/20‑1 (MQ=255) accccccgccaccagGAAAAAGATCAgcggcggcg < 1:2207295‑M2/20‑1 (MQ=255) aaTAACCGCCACCAGGAAAAAGATCAgcggcgggg > 1:7224101/1‑33 (MQ=255) aaTAACCGCCACCAGGAAAAAGATCAgcggcgggg > 1:6423221/1‑33 (MQ=255) ccccccgccaccagGAAAAAGATCAGCGGCGgcgc < 1:303035‑M2/21‑1 (MQ=255) ccccccgccaccagGAAAAAGATCAGCGGCGgcgc < 1:4393222‑M2/21‑1 (MQ=255) aTAACCGCCACCAGGAAAAAGATCAgcggcgggac > 1:275115/1‑32 (MQ=255) ccccgccaccagGAAAAAGATCAGCGGCGGCGCaa < 1:14390364‑M2/23‑1 (MQ=255) aaCCGCCACCAGGAAAAAGATCAGCGGCGGGGCaa > 1:14544668/1‑35 (MQ=255) cccgccaccagGAAAAAGATCAGCGGCGGCGCAAc < 1:10089573‑M2/24‑1 (MQ=255) ccGCCACCAGGAAAAAGATCAGCGGCGGGGCGAcc > 1:16188164/1‑35 (MQ=37) cgccaccagGAAAAAGATCAGCGGCGGCGCAGCCa < 1:20301505‑M2/26‑1 (MQ=255) cgccaccagGAAAAAGATCAGCGGCGGCGCAACCa < 1:14405645‑M2/26‑1 (MQ=255) cgccaccagGAAAAAGATCAGCGGCGGCGAAACCa < 1:13096617‑M2/26‑1 (MQ=255) gccaccagGAAAAGGATCAGCGGCGGCGCAACCAt < 1:1235556‑M2/27‑1 (MQ=255) gccaccagGAAAAAGATCAGCGGCGGCGCAACCAt < 1:14666411‑M2/27‑1 (MQ=255) gccaccagGAAAAAGATCAGCGGCGGCGCAACCAt < 1:14051809‑M2/27‑1 (MQ=255) ccaccaGGAAAAAGATCAGCGGCGGCGGAAACacc > 1:8312310/1‑33 (MQ=25) ccagGAAAAAGATCAGCGGCGGCGCAGCCATCAGt < 1:16332014‑M2/31‑1 (MQ=255) ccaGGAAAAAGATCAGCGGCGGGGGAACCAACAGt > 1:10961236/1‑35 (MQ=25) cagGAAAAAGATCAGCGGCGGCGCAACCATCAGTa < 1:12950621‑M2/32‑1 (MQ=255) gGAAAAAGATCAGCGGCGGCGCAACCATCAGTAcc < 1:14201917‑M2/34‑1 (MQ=255) gAAAAAGATCAGCGGCGGCGCAACCATCAGTAccc < 1:12463806/35‑1 (MQ=255) | TGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCC > REL606/1585423‑1585491 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |