New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1036071104 (1.010)18 (0.180) 6/46 NT 17.6% intergenic (+43/+33) ycbG/ompA hypothetical protein/outer membrane protein A (3a;II*;G;d)
?REL606 = 2316746 69 (0.700)coding (216/891 nt) yfbH hypothetical protein

AGGCAAAAAAAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1036056‑1036071
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCCAGCCATAAAGCGATGCCGCGTTTGAGCGCAGC  <  REL606/2316746‑2316713
                                                  
ccGCAAAAAAAACCCCCCAGCCATAAAGCGATGCC                 <  1:10323102/33‑1
  cCAAAAAAAACCCCCCAGCCATAAAGCGATGCCGC               <  1:4701778/34‑1
  aCAAAAAAAACCCCCCAGCCATAAAGCGATGCCGC               <  1:10539573/34‑1
  GCAAAAAAAACCCCCCAGCCATAAAGCGATGCCGC               <  1:5987452/35‑1
    cAAAAAAATCCCCCAGCCATAAAGCGATGCCGCGT             <  1:4286332/34‑1
    cAAAAAAACCCCCCAGCCATAAAGCGATGCCGCGT             <  1:12711325/34‑1
    cAAAAAAACCCCCCAGCCATAAAGCGATGCCGCGT             <  1:9622703/34‑1
    AAAAAAAACCCCCCAGCCATAAAGCGATGCCGCGT             <  1:5212776/35‑1
     agAAAAACCCCCCAGCCATAAAGCGATGCCGCGTT            <  1:3556755/33‑1
      AAAAAATCCCCCAGCCATAAAGCGATGCCGCGTTT           <  1:13744137/35‑1
      AAAAAATCCCCCAGCCATAAAGCGATGCCGCGTTT           <  1:5927032/35‑1
      AAAAAACCCCCCAGCCATAAAGCGATGCCGCGTTT           <  1:13124348/35‑1
      AAAAAACCCCCCAGCCATAAAGCGATGCCGCGTTT           <  1:3426826/35‑1
       AAAAACCCCCCAGCCATAAAGCGATGCCGCGTTTG          <  1:7713578/35‑1
        AAAATCCCCCAGCCATAAAGCGATGCCGCGTTTGA         <  1:9444665/35‑1
        AAAATCCCCCAGCCATAAAGCGATGCCGCGTTTGA         <  1:7001795/35‑1
        AAAACCCCCCAGCCATAAAGCGATGCCGCGTTTGA         <  1:3697308/35‑1
         AAATCCCCCAGCCATAAAGCGATGCCGCGTTTGAG        <  1:5144373/35‑1
          actCCCCCAGCCATAAAGCGATGCCGCGTTTGAGC       <  1:18782504/32‑1
          acCCCCCCAGCCATAAAGCGATGCCGCGTTTGAGC       <  1:7579882/33‑1
          aatCCCCCAGCCATAAAGCGATGCCGCGTTTGAGC       <  1:4047775/32‑1
          aatCCCCCAGCCATAAAGCGATGCCGCGTTTGAGC       <  1:10745308/32‑1
          AACCCCCCAGCCATAAAGCGATGCCGCGTTTGAGC       <  1:18130731/35‑1
          AACCCCCCAGCCATAAAGCGATGCCGCGTTTGAGC       <  1:13856132/35‑1
           nCCCCCNAGCCATAAAGCGATGCCGCGTTTGAGCG      <  1:342741/34‑1
           ACCCCCCAGCCATAAAGCGATGCCGCGTTTGAGCG      <  1:2024986/35‑1
           ACCCCCCAGCCATAAAGCGATGCCGCGTTTGAGCG      <  1:14502340/35‑1
            CCCCCCAGCCATAAAGCGATGCCGCGTTTGAGCGC     <  1:16532210/35‑1
            CCCCCCAGCCATAAAGCGATGCCGCGTTTGAGCGC     <  1:3436941/35‑1
             aCCCCAGCCATAAAGCGATGCCGCGTTTGAGCGCA    <  1:1254121/34‑1
             CCCCCAGCCATAAAGCGATGCCGGGTTTGAGCGCA    <  1:19546198/35‑1
             CCCCCAGCCATAAAGCGATGCCGCGTTTGAGCGCA    <  1:9742113/35‑1
             CCCCCAGCCATAAAGCGATGCCGCGTTTGAGCGCA    <  1:4147445/35‑1
             CCCCCAGCCATAAAGCGATGCCGCGTTTGAGCGCA    <  1:16483554/35‑1
             CCCCCAGCCATAAAGCGATGCCGCGTTTGAGCGCA    <  1:13104275/35‑1
             CCCCCAGCCATAAAGCGATGACGCGTTTGAGCGCA    <  1:18384630/35‑1
              CCCCAGCCATAAAGCGATGCCGCGTTTGAGCGCAG   <  1:12959373/35‑1
              CCCCAGCCATAAAGCGATGCCGCGTTTGAGCGCAG   <  1:1092614/35‑1
               CCCAGCCATAAAGCGATGCCGCGTTTGAGCGCAGC  <  1:20407724/35‑1
               CCCAGCCATAAAGCGATGCCGCGTTTGAGCGCAGC  <  1:1445528/35‑1
               CCCAGCCATAAAGCGATGCCGCGTTTGAGCGCAGC  <  1:13701810/35‑1
               CCCAGCCATAAAGCGATGCCGCGTTTGAGCGCAGC  <  1:9172959/35‑1
               CCCAGCCATAAAGCGATGCCGCGTTTGAGCGCAGC  <  1:9244338/35‑1
                                                  
AGGCAAAAAAAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1036056‑1036071
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCCAGCCATAAAGCGATGCCGCGTTTGAGCGCAGC  <  REL606/2316746‑2316713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.