New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 687921 | 62 (0.600) | 12 (0.130) | 4/44 | NT | 12.4% | coding (1883/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA components |
? | REL606 | 970674 = | 112 (1.190) | intergenic (‑27/+28) | pflB/focA | pyruvate formate lyase I/formate transporter |
Only 100 of 177 total aligned reads displayed.
TCGGACATGTAACACCTACCTTCTTAAGTGGATTTTTTATTTACTGCGTACTTCGACAACCATTAATGG > REL606/970640‑970708 | tggtttgcagcaatatcgacgatttcagtggcttt > 1:16818460‑M2/35‑35 (MQ=255) tCGGACATGTAACACCTACCTTCTTAAGTGGAttt > 1:19845325/1‑35 (MQ=255) tCGGACATGTAACACCTACCTTCTTAAGTGGAttt < 1:10389385/35‑1 (MQ=255) tCGGACATGTAACACCTACCTTCTTAAGTGGAttt > 1:10964465/1‑35 (MQ=255) tCGGACATGTAACACCTACCTTCTTAAGTGGAttn < 1:5912232/35‑1 (MQ=255) ggtttgcagcaatatcgacgatttcagtggctttt > 1:14865835‑M2/34‑35 (MQ=255) ggtttgcagcaatatcgacgatttcagtggctttt > 1:13833834‑M2/34‑35 (MQ=255) cGGACATGTAACACCTACCTTCTTAAGTGGAtttt < 1:5798114/35‑1 (MQ=255) cGGACATGTAACACCTACCTTCTTAAGTGGAtttt < 1:13755434/35‑1 (MQ=255) cGGACATGTAACACCTACCTTCTTAAGTGGAtttt > 1:17181563/1‑35 (MQ=255) cGGACATGTAACACCTACCTTCTTAAGTGGAtttt < 1:414432/35‑1 (MQ=255) gtttgcagcaatatcgacgatttcagtggcttttt > 1:7092271‑M2/33‑35 (MQ=255) gtttgcagcaatatcgacgatttcagtggctttat > 1:19049115‑M2/33‑33 (MQ=255) gACATGTAACACCTACCTTCTTAAGTGGAtttttt < 1:13198559/35‑1 (MQ=255) ttgcagcaatatcgacgatttcagtggcttTttta > 1:10681714‑M2/31‑35 (MQ=255) aCATGTAACACCTACCTTCTTAAGTGGATTTttta > 1:6613402/1‑35 (MQ=255) aCATGTAACACCTACCTTCTTAAGTGGATTTttta > 1:17532098/1‑35 (MQ=255) cATGTAACACCTACCTTCTTAAGTGGATTTtttat > 1:18803467/1‑35 (MQ=255) cATGTAACACCTACCTTCTTAAGTGGATTTtttat < 1:10984112/35‑1 (MQ=255) cATGTAACACCTACCTTCTTAAGTGGATTTtttat > 1:19762837/1‑35 (MQ=255) gcagcaatatcgacgatttcagtggcttTattatt > 1:18974411‑M2/29‑35 (MQ=255) aTGTAACACCTACCTTCTTAAGTGGATTTtttatt > 1:18343406/1‑35 (MQ=255) aTGTAACACCTACCTTCTTAAGTGGATTTtttatt > 1:158097/1‑35 (MQ=255) aTGTAACACCTACCTTCTTAAGTGGATTTtttatt > 1:19214861/1‑35 (MQ=255) tGTAACACCTACCTTCTTAAGTGGATTTtttattt > 1:11818787/1‑35 (MQ=255) tGTAACACCTACCTTCTTAAGTGGATTTtttattt < 1:16966429/35‑1 (MQ=255) tGTAACACCTACCTTCTTAAGTGGATTTtttattt < 1:7826107/35‑1 (MQ=255) tGTAACACCTACCTTCTTAAGTGGATTTtttattt < 1:20495847/35‑1 (MQ=255) tGTAACACCTACCTTCTTAAGTGGATTTtttattt > 1:15558778/1‑35 (MQ=255) cagcaatatcgacgatttcagtggctttttcatta > 1:14518547‑M2/28‑34 (MQ=255) cagcaatatcgacgatttcagtggcttTtttattt > 1:4856712‑M2/28‑35 (MQ=255) gTAACACCTACCTTCTTAAGTGGATTTtttattta > 1:16200076/1‑35 (MQ=255) gTAACACCTACCTTCTTAAGTGGATTTtttattta < 1:10014851/35‑1 (MQ=255) gTAACACCTACCTTCTTAAGTGGATTTtttattta > 1:13060002/1‑35 (MQ=255) agcaatatcgacgatttcagtggcttttttattaa > 1:19477626‑M2/27‑33 (MQ=255) agcaatatcgacgatttcagtggcttTtttattta > 1:13463554‑M2/27‑35 (MQ=255) agcaatatcgacgatttcagtggcttTtttattta > 1:8357249‑M2/27‑35 (MQ=255) agcaatatcgacgatttcagtggcttTttcattta > 1:6399151‑M2/27‑35 (MQ=255) tAACACCTACCTTCTTAAGTGGATTTTTTATTTAc > 1:16578655/1‑35 (MQ=255) tAACACCTACCTTCTTAAGTGGATTTTTTATTTAc > 1:6409580/1‑35 (MQ=255) caatatcgacgatttcagtggcttttttatttaaa > 1:11968485‑M2/25‑33 (MQ=255) caatatcgacgatttcagtggcttttttatttaaa > 1:8214687‑M2/25‑33 (MQ=255) aaCACCTACCTTCTTAAGTGGATTTTTTATTTACt < 1:18668674/35‑1 (MQ=255) aaCACCTACCTTCTTAAGTGGATTTTTTATTTACt < 1:10340439/35‑1 (MQ=255) aaCACCTACCTTCTTAAGTGGATTTTTTATTTACt > 1:17396951/1‑35 (MQ=255) acacCTACCTTCTTAAGTGGATTTTTTATTTACTg < 1:2085890/35‑1 (MQ=255) acacCTACCTTCTTAAGTGGATTTTTTATTTACTg > 1:7377423/1‑35 (MQ=255) acacCTACCTTCTTAAGTGGATTTTTTATTTACTg < 1:16692458/35‑1 (MQ=255) acacCTACCTTCTTAAGTGGATTTTTTATTTACTg < 1:19680769/35‑1 (MQ=255) acacCTACCTTCTTAAGTGGATTTTTTATTTACTg < 1:5087468/35‑1 (MQ=255) acacCTACCTTCTTAAGTGGATTTTTTATTTACTg > 1:1971553/1‑35 (MQ=255) cacCTACCTTCTTAAGTGGATTTTTTATTTACTGc < 1:4999751/35‑1 (MQ=255) cacCTACCTTCTTAAGTGGATTTTTTATTTACTGc < 1:5248493/35‑1 (MQ=255) cacCTACCTTCTTAAGTGGATTTTTTATTTACTGc < 1:1547819/35‑1 (MQ=255) acctacctTCTTAAGTGGATTTTTTATTTACTGCg < 1:12584962/35‑1 (MQ=255) acctacctTCTTAAGTGGATTTTTTATTTACTGCg < 1:13569021/35‑1 (MQ=255) cctacctTCTTAAGTGGATTTTTTATTTACTGCGt > 1:7303611/1‑35 (MQ=255) cctacctTCTTAAGTGGATTTTTTATTTACTGCGt > 1:17759849/1‑35 (MQ=255) ctacctTCTTAAGTGGATTTTTTATTTACTGCGTa < 1:9163797/35‑1 (MQ=255) tacctTCTTAAGTGGATTTTTTATTTACTGCGTAc > 1:12494921/1‑35 (MQ=255) tacctTCTTAAGTGGATTTTTTATTTACTGCGTAc < 1:4785168/35‑1 (MQ=255) acctTCTTAAGTGGATTTTTTATTTACTGCGTACt < 1:9827372/35‑1 (MQ=255) acctTCTTAAGTGGATTTTTTATTTACTGCGTACt > 1:10169978/1‑35 (MQ=255) cctTCTTAAGTGGATTTTTTATTTACTGCGTACtt < 1:11220693/35‑1 (MQ=255) cctTCTTAAGTGGATTTTTTATTTACTGCGTACtt > 1:6980581/1‑35 (MQ=255) cctTCTTAAGTGGATTTTTTATTTACTGCGTACtt > 1:6664827/1‑35 (MQ=255) cctTCTTAAGTGGATTTTTTATTTACTGCGTACtt < 1:14367525/35‑1 (MQ=255) cctTCTTAAGTGGATTTTTTATTTACTGCGTACtt < 1:5722254/35‑1 (MQ=255) cctTCTTAAGTGGATTTTTTATTTACTGCGTACtt < 1:19974656/35‑1 (MQ=255) cctTATTAAGTGGATTTTTTATTTACTGCGTACtt < 1:18131039/35‑1 (MQ=255) cctTATTAAGTGGATTTTTTATTTACTGCGTACtt < 1:16238040/35‑1 (MQ=255) cttcttAAGTGGATTTTTTATTTACTGCGTACTTc < 1:8082279/35‑1 (MQ=255) cttcttAAGTGGATTTTTTATTTACTGCGTACTTc < 1:3629623/35‑1 (MQ=255) ttcttAAGTGGATTTTTTATTTACTGCGTACTTCg > 1:4667226/1‑35 (MQ=255) ttcttAAGTGGATTTTTTATTTACTGCGTACTTCg > 1:16376112/1‑35 (MQ=255) ttcttAAGTGGATTTTTTATTTACTGCGTACTTCg > 1:11479889/1‑35 (MQ=255) tcttAAGTGGATTTTTTATTTACTGCGTACTTCGa > 1:16480019/1‑35 (MQ=255) tcttAAGTGGATTTTTTATTTACTGCGTACTTCGa < 1:8053189/35‑1 (MQ=255) tcttAAGTGGATTTTTTATTTACTGCGTACTTCGa < 1:11944119/35‑1 (MQ=255) cttAAGTGGATTTTTTATTTACTGCGTACTTCGAc > 1:19531196/1‑35 (MQ=255) cttAAGTGGATTTTTTATTTACTGCGTACTTCGAc > 1:18474875/1‑35 (MQ=255) cttAAGTGGATTTTTTATTTACTGCGTACTTCGAc < 1:5704243/35‑1 (MQ=255) cttAAGTGGATTTTTTATTTACTGCGTACTTCGAc > 1:15741772/1‑35 (MQ=255) cttAAGTGGATTTTTTATTTACTGCGTACTTCGAc < 1:10587590/35‑1 (MQ=255) tAAGTGGATTTTTTATTTACTGCGTACTTCGACaa < 1:14731284/35‑1 (MQ=255) tAAGTGGATTTTTTATTTACTGCGTACTTCGACaa > 1:20141423/1‑35 (MQ=255) aaGTGGATTTTTTATTTACTGCGTACTTCGACAAc < 1:15411365/35‑1 (MQ=255) aaGTGGATTTTTTATTTACTGCGTACTTCGACAAc > 1:909735/1‑35 (MQ=255) aaGTGGATTTTTTATTTACTGCGTACTTCGACAAc < 1:12123112/35‑1 (MQ=255) aaGTGGATTTTTTATTTACTGCGTACTTCGACAAc < 1:1180534/35‑1 (MQ=255) aaGTGGATTTTTTATTTACTGCGTACTTCGACAAc < 1:34633/35‑1 (MQ=255) aaGTGGATTTTTTATTTACTGCGTACTTCGACAAc < 1:8272144/35‑1 (MQ=255) tGGATTTTTTATTTACTGCGTACTTCGACAACCAt > 1:12650398/1‑35 (MQ=255) tGGATTTTTTATTTACTGCGTACTTCGACAACCAt > 1:20296354/1‑35 (MQ=255) tGGATTTTTTATTTACTGCGTACTTCGACAACCAt > 1:8837189/1‑35 (MQ=255) gATTTTTTATTTACTGCGTACTTCGACAACCATTa > 1:2702607/1‑35 (MQ=255) tTTTTATTTACTGCGTACTTCGACAACCATTAATg > 1:15786843‑M2/2‑35 (MQ=255) tTTTTATTTACTGCGTACTTCGACAACCATTAATg > 1:3280050‑M2/2‑35 (MQ=255) ttttATTTACTGCGTACTTCGACAACCATTAAtgg > 1:1077079/1‑35 (MQ=255) ttttATTTACTGCGTACTTCGACAACCATTAAtgg > 1:12577131/1‑35 (MQ=255) | TCGGACATGTAACACCTACCTTCTTAAGTGGATTTTTTATTTACTGCGTACTTCGACAACCATTAATGG > REL606/970640‑970708 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |