New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1332936 =97 (0.940)12 (0.150) 5/38 NT 15.3% coding (710/975 nt) cysB DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding
?REL606 = 2871320 56 (0.690)coding (101/1032 nt) galR DNA‑binding transcriptional repressor

GATCCACCGCCATGCTGGCAATGACCCCTACCCCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1332974‑1332936
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccAGCCGGGAAGCTTCACTGGCTTTAGGTGAATTAT  <  REL606/2871320‑2871287
                                                                         
GATCCACCGCCATGCTGGCAATGACCCCTACCCCC                                        >  1:14728039/1‑35
 ATCCACCGCCATGCTGGCAATGACCCCTACCCCCA                                       >  1:17696968/1‑35
 ATCCACCGCCATGCTGGCAATGACCCCTACCCCCA                                       >  1:12793467/1‑35
 ATCCACCGCCATGCTGGCAATGACCCCTACCCCCA                                       >  1:4027573/1‑35
  TCCACCGCCATGCTGGCAATGACCCCTACCCCCAG                                      >  1:13887680/1‑35
   cccCCGCCATGCTGGCAATGACCCCTACCCCCAGC                                     <  1:14430605/32‑1
   CCACCGCCATGCTGGCAATGACCCCTACCCCCAGC                                     >  1:13643182/1‑35
    ccCCGCCATGCTGGCAATGACCCCTACCCCCAGCC                                    <  1:5992514/33‑1
    ccCCGCCATGCTGGCAATGACCCCTACCCCCAGCC                                    <  1:12923166/33‑1
    ccCCGCCATGCTGGCAATGACCCCTACCCCCAGCC                                    <  1:14003197/33‑1
    CACCGCCATGCTGGCAATGACCCCTACCCCCAGCC                                    >  1:16590535/1‑35
    CACCGCCATGCTGGCAATGACCCCTACCCCCAGCC                                    >  1:14878969/1‑35
                        ccaCTACCCCCAGCCAGCCGGGAAGCTTCACTGGC                <  1:16441864/32‑1
                        CCCCTACCCCCAGCCAGCCGGGAAGCTTCACTGGC                <  1:3395557/35‑1
                         CCCTACCCCCAGCCAGCCGGGAAGCTTCACTGGCT               <  1:1480182/35‑1
                         CCCTACCCCCAGCCAGCCGGGAAGCTTCACTGGCT               <  1:9313639/35‑1
                         CCCCACCCCCAGCCAGCCGGGAAGCTTCACTGGCT               <  1:5705445/35‑1
                          aCTACCCCCAGCCAGCCGGGAAGCTTCACTGGCTT              <  1:1416064/34‑1
                          aCTACCCCCAGCCAGCCGGGAAGCTTCACTGGCTT              <  1:11925715/34‑1
                          aCTACCCCCAGCCAGCCGGGAAGCTTCACTGGCTT              <  1:8654104/34‑1
                          CCTCCCCCCAGCCAGCCGGGAAGCTTCACTGGCTT              <  1:13074805/35‑1
                           CTACGCCCAGCCAGCCGGGAAGCTTCACTGGCTTT             <  1:152075/35‑1
                            actCCCCAGCCAGCCGGGAAGCTTCACTGGCTTTA            <  1:8795204/32‑1
                            TACCCCCAGCCAGCCGGGAAGCTTCACTGGCTTTA            <  1:20320243/35‑1
                            TACCCCCAGCCAGCCGGGAAGCTTCACTGGCTTTA            <  1:10503289/35‑1
                             tCCCCCAGCCAGCCGGGAAGCTTCACTGGCTTTAG           <  1:20190005/34‑1
                             cCCCCCAGCCAGCCGGGAAGCTTCACTGGCTTTAG           <  1:15244839/34‑1
                              CCCCCAGCCAGCCGGGAAGCTTCACTGGCTTTAGG          <  1:19463014/35‑1
                              CCCCCAGCCAGCCGGGAAGCTTCACTGGCTTTAGG          <  1:11569582/35‑1
                              CCCCCAGCCAGCCGGGAAGCTTCACTGGCTTTAGG          <  1:13140971/35‑1
                                 CCAGCCAGCCGGGAAGCTTCACTGGCTTTAGGTGA       <  1:2085084/35‑1
                                 CCAGCCAGCCGGGAAGCTTCAATGGCTTTAGGTGA       <  1:2008120/35‑1
                                  CAGCCAGCCGGGAAGCTTCACTGGCTTTAGGTGAA      <  1:17686168/35‑1
                                  CAGCAAGCCGGGAAGCTTCACTGGCTTTAGGTGAA      <  1:5957547/35‑1
                                   AGCCATCCGGGAAGCTTCACTGGCTTTAGGTGAAT     >  1:15293752/1‑35
                                   AGCCAGCCGGGAAGCTTCACTGGCTTTTGGTGAAT     >  1:541035/1‑35
                                   AGCCAGCCGGGAAGCTTCACTGGCTTTAGGTGAAT     <  1:18758958/35‑1
                                   AGCCAGCCGGGAAGCTTCACTGGCTTTAGGTGAAT     >  1:19074617/1‑35
                                   AGCCAGCCGGGAAGCTTCACTGGCTTTAGGTGAAT     >  1:19404827/1‑35
                                   AGCCAGCCGGGAAGCTTCACTGGCTTTAGGTGAAT     <  1:7696730/35‑1
                                    GCCAGCCGGGAAGCTTCACTGGCTTTAGGTGAATT    <  1:5615524/35‑1
                                    GCCAGCCGGGAAGCTTCACTGGCTTTAGGTGAATT    <  1:3531552/35‑1
                                     CCAGCCGGGAAGCTTCACTGGCTTTAGGTGAATTA   >  1:2488380/1‑35
                                     CCAGCCGGGAAGCTTCACTGGCTTTAGGTGAATTA   >  1:11314856/1‑35
                                     CCAGCAGGGAAGCTTCACTGGCTTTAGGTGAATTA   <  1:9341445/35‑1
                                      CAGCCGGGAAGCTTCACTGGCTTTTGGTGAATTAT  >  1:12441485/1‑35
                                      CAGCCGGGAAGCTTCACTGGCTTTAGGTGAATTAT  >  1:12315878/1‑35
                                      CAGCCGGGAAGCTTCACTGGCTTTAGGTGAATTAT  <  1:6897461/35‑1
                                      CAGCCGGGAAGCTTCACTGGCTTTAGGTGAATTAT  <  1:14392096/35‑1
                                      CAGCCGGGAAGCTTCACTGGCTTTAGGTGAATTAT  >  1:19378839/1‑35
                                                                         
GATCCACCGCCATGCTGGCAATGACCCCTACCCCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1332974‑1332936
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccAGCCGGGAAGCTTCACTGGCTTTAGGTGAATTAT  <  REL606/2871320‑2871287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.