New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 245448167 (0.650)14 (0.140) 6/46 NT 15.1% coding (158/342 nt) ECB_02307 conserved hypothetical protein
?REL606 = 4471806 97 (0.940)coding (1485/1503 nt) yjgR predicted ATPase

Only 100 of 146 total aligned reads displayed.

CAACAAATTAAAGAGATTGTAGACACTAGCGGCAGTGCTGAAGACAAGCAAAAACAGGCCGAATTGATT  >  REL606/2454447‑2454515
                                  |                                  
caacaaATTAAAGAGATTGTAGACACTAGCGGCAg                                    >  1:773287/1‑35 (MQ=255)
 aacaaATTAAAGAGATTGTAGACACTAGCGGCAGg                                   >  1:18153197‑M1/1‑34 (MQ=255)
  acaaATTAAAGAGATTGTAGACACTAGCGGCAGgg                                  >  1:14720496‑M1/1‑33 (MQ=255)
  acaaATTAAAGAGATTGTAGACACTAGCGGCAGgg                                  >  1:4599232‑M1/1‑33 (MQ=255)
  acaaATAAAAGAGATTGTAGACACTAGCGGCAGTg                                  <  1:18099591/35‑1 (MQ=255)
    aaaTTAAAGAGATTGTAGACACTAGCGGCAGgggg                                >  1:13578383‑M1/1‑31 (MQ=255)
    aaaTTAAAGAGATTGTAGACACTAGCGGCAGgggg                                >  1:16034747‑M1/1‑31 (MQ=255)
    aaaTTAAAGAGATTGTAGACACTAGCGGCAGgggg                                >  1:18043660‑M1/1‑31 (MQ=255)
    aaaTTAAAGAGATTGTAGACACTAGCGGCAGgggg                                >  1:8705271‑M1/1‑31 (MQ=255)
    aaaTTAAAGAGATTGTAGACACTAGCGGCAGgggc                                >  1:19682972‑M1/1‑31 (MQ=255)
    aaaTTAAAGAGATTGTAGACACTAGCGGCAGTGCt                                <  1:6598303/35‑1 (MQ=255)
    aaaTTAAAGAGATTGTAGACACTAGCGGCAGTGCt                                <  1:13052169/35‑1 (MQ=255)
    aaaTAAAAGAGATTGTAGACACTAGCGGCAGTGCt                                <  1:14360757/35‑1 (MQ=255)
     aaTTAAAGAGATTGTAGACACTAGCGGCAGggggg                               >  1:6482195‑M1/1‑30 (MQ=255)
     aaTTAAAGAGATTGTAGACACTAGCGGCAGggggg                               >  1:4758890‑M1/1‑30 (MQ=255)
     aaTTAAAGAGATTGTAGACACTAGCGGCAGTGCTg                               <  1:4043896/35‑1 (MQ=255)
     aaTTAAAGAGATTGTAGACACTAGCGGCAGTGCTg                               <  1:6089005/35‑1 (MQ=255)
      aTTAAAGAGATTGTAGACACTAGCGGCAGgggggg                              >  1:3149231‑M1/1‑29 (MQ=255)
      aTTAAAGAGATTGTAGACACTAGCGGCAGgggggg                              >  1:12652978‑M1/1‑29 (MQ=255)
      aTTAAAGAGATTGTAGACACTAGCGGCAGgggggg                              >  1:20032867‑M1/1‑29 (MQ=255)
      aTTAAAGAGATTGTAGACACTAGCGGCAGgggggg                              >  1:18500721‑M1/1‑29 (MQ=255)
      aTTAAAGAGATTGTAGACACTAGCGGCAGTGCTGa                              <  1:11557172/35‑1 (MQ=255)
       ttAAAGAGATTGTAGACACTAGCGGCAGggggggg                             >  1:4349664‑M1/1‑28 (MQ=255)
         aaaGAGATTGTAGACACTAGCGGCAGggggggggg                           >  1:406835‑M1/1‑26 (MQ=255)
         aaaGAGATTGTAGACACTAGCGGCAGgggggggga                           >  1:8733079‑M1/1‑26 (MQ=255)
         aaaGAGATTGTAGACACTAGCGGCAGggggggagg                           >  1:15451741‑M1/1‑26 (MQ=255)
         aaaGAGATTGTAGACACTAGCGGCAGTGCTGAAGa                           <  1:10277425/35‑1 (MQ=255)
          aaGAGATTGTAGACACTAGCGGCAGgggggggggg                          >  1:14770063‑M1/1‑25 (MQ=255)
          aaGAGATTGTAGACACTAGCGGCAGggggggggag                          >  1:373731‑M1/1‑25 (MQ=255)
          aaGAGATTGTAGACACTAGCGGCAGTGCTGAAGAc                          <  1:4173394/35‑1 (MQ=255)
          aaGAGATTGTAGACACTAGCGGCAGTGCTGAAGAc                          <  1:17067939/35‑1 (MQ=255)
          aaGAGATTGTAGACACTAGCGGCAGTGCTGAAGAc                          <  1:8100544/35‑1 (MQ=255)
           agagATTGTAGACACTAGCGGCAGggggggggggg                         >  1:1797968‑M1/1‑24 (MQ=255)
           agagATTGTAGACACTAGCGGCAGgggggggggga                         >  1:5486306‑M1/1‑24 (MQ=255)
           agagATTGTAGACACTAGCGGCAGgggggggggac                         >  1:6810944‑M1/1‑24 (MQ=255)
           agagATTGTAGACACTAGCGGCAGggggggggaga                         >  1:7070088‑M1/1‑24 (MQ=255)
           agagATTGTAGACACTAGCGGCAGTGCTGAAGACa                         <  1:2245233/35‑1 (MQ=255)
           agagATTGTAGACACTAGCGGCAGTGCTGAAGACa                         <  1:5732967/35‑1 (MQ=255)
           agagATTGTAGACACTAGCGGCAGTGCTGAAGACa                         <  1:11267322/35‑1 (MQ=255)
            gagaTTGTAGACACTAGCGGCAGTGCTGAAGACaa                        <  1:19486179/35‑1 (MQ=255)
            ctgaTTGTAGACACTAGCGGCAGTGCTGAAGACaa                        <  1:8336151/33‑1 (MQ=255)
             agaTTGTAGACACTAGCGGCAGTGCTGAAGACAAg                       <  1:7406920/35‑1 (MQ=255)
             agaTTGTAGACACTAGCGGCAGTGCTGAAGACAAg                       <  1:8305640/35‑1 (MQ=255)
             agaTTGTAGACACTAGAGGCAGTGCTGAAGACAAg                       <  1:3170725/35‑1 (MQ=255)
              gaTTGTAGACACTAGCGGCAGTGCTGAAGACAAGc                      <  1:4898163/35‑1 (MQ=255)
              gaTTGTAGACACTAGCGGCAGTGCTGAAGACAAGc                      <  1:6576558/35‑1 (MQ=255)
               aTTGTAGACACTAGCGGCAGggggggggagaagaa                     >  1:7490360‑M1/1‑20 (MQ=255)
               aTTGTAGACACTAGCGGCAGTGCTGAAGACAAGCa                     <  1:3605161/35‑1 (MQ=255)
               aTTGTAGACACTAGCGGCAGTGCTGAAGACAAGCa                     <  1:6955081/35‑1 (MQ=255)
               aTTGTAGACACTAGCGGCAGTGCTGAAGACAAGCa                     <  1:2293163/35‑1 (MQ=255)
                ttGTAGACACTAGCGGCAGTGCTGAAGACAAGCaa                    <  1:2521312/35‑1 (MQ=255)
                ttGTAGACACTAGCGGCAGTGCTGAAGACAAGCaa                    <  1:16719887/35‑1 (MQ=255)
                ttGTAGACAATAGCGGCAGTGCTGAAGACAAGCaa                    <  1:5993544/35‑1 (MQ=255)
                 tGTAGACACTAGCGGCAGTGCTGAAGACAAGCaaa                   <  1:15315138/35‑1 (MQ=255)
                 gggaGACACTAGCGGCAGTGCTGAAGACAAGCaaa                   <  1:17432278/32‑1 (MQ=255)
                  gTAGACACTAGCGGCAGTGCTGAAGACAAGCaaaa                  <  1:6721732/35‑1 (MQ=255)
                  gTAGACACTAGCGGCAGTGCTGAAGACAAGCaaaa                  <  1:15088946/35‑1 (MQ=255)
                    aGACACTAGCGGCAGTGCTGAAGACAAGCAAAAAc                <  1:11816164/35‑1 (MQ=255)
                    aGACACTAGCGGCAGTGCTGAAGACAAGCAAAAAc                <  1:17258444/35‑1 (MQ=255)
                    aGACACTAGCGGCAGTGCTGAAGACAAGCAAAAAc                <  1:15945058/35‑1 (MQ=255)
                     gACACTAGCTGCAGTGCTGAAGACAAGCAAAAACa               >  1:2514762/1‑35 (MQ=255)
                     gACACTAGCGGCAGTGCTGAAGACAAGCAAAAACa               <  1:15254963/35‑1 (MQ=255)
                      acacTAGCGGCAGTGCTGAAGACAAGCAAAAACAg              <  1:2739505/35‑1 (MQ=255)
                      acacTAGCGGCAGTGCTGAAGACAAGCAAAAACAg              <  1:20099034/35‑1 (MQ=255)
                       cacTAGCGGCAGTGCTGAAGACAAGCAAAAACAgg             <  1:13915003/35‑1 (MQ=255)
                        acTAGCGGCAGTGCTGAAGACAAGCAAAAACAGGc            <  1:2168136/35‑1 (MQ=255)
                         cTAGCGGCAGTGCTGAAGACAAGCAAAAACAGGcc           <  1:10666528/35‑1 (MQ=255)
                          tAGCGGCAGTGCTGAAGACAAGCAAAAACAGGCCg          <  1:18725688/35‑1 (MQ=255)
                          tAGCGGCAGTGCTGAAGACAAGCAAAAACAGGCCg          <  1:11826599/35‑1 (MQ=255)
                           aGCGGCAGTGCTGAAGACAAGCAAAAACAGGCCGa         <  1:15698033/35‑1 (MQ=255)
                           aGCGGCAGTGCTGAAGACAAGCAAAAACAGGCCGa         <  1:13323682/35‑1 (MQ=255)
                            gCGGCAGTGCTGAAGACAAGCAAAAACAGGCCGaa        <  1:5319799/35‑1 (MQ=255)
                            gCGGCAGTGCTGAAGACAAGCAAAAACAGGCCGaa        <  1:16376356/35‑1 (MQ=255)
                            gCGGCAGTGCTGAAGACAAGCAAAAACAGGCCGaa        <  1:19319571/35‑1 (MQ=255)
                             cGGCAGTGCTGAAGACAAGCAAAAACAGGCCGAAt       <  1:18745243/35‑1 (MQ=255)
                              ggCAGTGCTGAAGACAAGCAAAAACAGGCCGAAtt      <  1:1082690/35‑1 (MQ=255)
                              ggCAGTGCTGAAGACAAGCAAAAACAGGCCGAAtt      <  1:2032460/35‑1 (MQ=255)
                              ggCAGTGCTGAAGACAAGCAAAAACAGGCCGAAtt      <  1:2734892/35‑1 (MQ=255)
                               gCAGTGCTGAAGACAAGCAAAAACAGGCCGAATTg     >  1:10613590/1‑35 (MQ=255)
                               gCAGTGCTGAAGACAAGCAAAAACAGGCCGAATTg     >  1:100742/1‑35 (MQ=255)
                               gCAGTGCTGAAGACAAGCAAAAACAGGCCGAATTg     >  1:9770484/1‑35 (MQ=255)
                               gCAGTGCTGAAGACAAGCAAAAACAGGCCGAATTg     <  1:4897439/35‑1 (MQ=255)
                               gCAGTGCTGAAGACAAGCAAAAACAGGCCGAATTg     >  1:15724498/1‑35 (MQ=255)
                                cAGTGCTGAAGACAAGCAAAAACAGGCCGAATTGa    <  1:9921706/35‑1 (MQ=255)
                                cAGTGCTGAAGACAAGCAAAAACAGGCCGAATTGa    >  1:7061437/1‑35 (MQ=255)
                                cAGTGCTGAAGACAAGCAAAAACAGGCCGAATTGa    >  1:4545030/1‑35 (MQ=255)
                                cAGTGCTGAAGACAAGCAAAAACAGGCCGAATTGa    >  1:3540276/1‑35 (MQ=255)
                                cAGTGCTGAAGACAAGCAAAAACAGGCCGAATTGa    >  1:19535100/1‑35 (MQ=255)
                                cAGTGCTGAAGACAAGCAAAAACAGGCCGAATTGa    <  1:19306713/35‑1 (MQ=255)
                                 aGTGCTGAAGACAAGCAAAAACAGGCCGAATTGAt   >  1:7138888/1‑35 (MQ=255)
                                 aGTGCTGAAGACAAGCAAAAACAGGCCGAATTGAt   >  1:17355106/1‑35 (MQ=255)
                                 aGTGCTGAAGACAAGCAAAAACAGGCCGAATTGAt   <  1:14698743/35‑1 (MQ=255)
                                 aGTGCTGAAGACAAGCAAAAACAGGCCGAATTGAt   >  1:13152263/1‑35 (MQ=255)
                                 aGTGCTGAAGACAAGCAAAAACAGGCCGAATTGAt   >  1:10020899/1‑35 (MQ=255)
                                  gTGCTGAAGACAAGCAAAAACAGGCCGAATTGAtt  <  1:5866485/35‑1 (MQ=255)
                                  gTGCTGAAGACAAGCAAAAACAGGCCGAATTGAtt  <  1:5079679/35‑1 (MQ=255)
                                  gTGCTGAAGACAAGCAAAAACAGGCCGAATTGAtt  >  1:4646994/1‑35 (MQ=255)
                                  gTGCTGAAGACAAGCAAAAACAGGCCGAATTGAtt  <  1:2088063/35‑1 (MQ=255)
                                  gTGCTGAAGACAAGCAAAAACAGGCCGAATTGAtt  <  1:19750865/35‑1 (MQ=255)
                                  gTGCTGAAGACAAGCAAAAACAGGCCGAATTGAtt  <  1:11263651/35‑1 (MQ=255)
                                  |                                  
CAACAAATTAAAGAGATTGTAGACACTAGCGGCAGTGCTGAAGACAAGCAAAAACAGGCCGAATTGATT  >  REL606/2454447‑2454515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.