New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3894996NA (NA)5 (0.050) 5/46 NT 5.3% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 4415712 90 (0.910)coding (850/1413 nt) cycA D‑alanine/D‑serine/glycine transporter

TCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3894974‑3894996
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCAAACGGGCTTTTCTCCGGGACTACCGAACTCCA  <  REL606/4415712‑4415679
                                                         
TCCAACTTTTTGGGGTCAGTACACAAACGGGCTTT                        >  1:16495139/1‑35
  CAACTTTTTGGGGTCAGTACACAAACGGGCTTTTC                      >  1:9363655/1‑35
      TTTTTGGGGTCAGTACACAAACGGGCTTTTCTCCG                  <  1:6231372/35‑1
          TGGGGTCAGTACACAAACGGGCTTTTCTCCGGGAC              >  1:1372567/1‑35
              GTCAGTACACAAACGGGCTTTTCTCCGGGACTACC          >  1:2233858/1‑35
                 AGTACACAAACGGGCTTTTCTCCGGGACTACCGAA       >  1:444259/1‑35
                 AGTACACAAACGGGCTTTTCTCCGGGACTACCGAA       >  1:5690821/1‑35
                   TACACAAACGGGCTTTTCTCCGGGACTACCGAACT     >  1:19346761/1‑35
                      ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA  >  1:11569198/1‑35
                      ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA  >  1:12758425/1‑35
                      ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA  >  1:14844629/1‑35
                      ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA  >  1:16015047/1‑35
                      ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA  <  1:554506/35‑1
                      ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA  <  1:6506952/35‑1
                      ACAAACGGGCTTTTCTCCGGGACTACCGAACTCCA  >  1:760567/1‑35
                                                         
TCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3894974‑3894996
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCAAACGGGCTTTTCTCCGGGACTACCGAACTCCA  <  REL606/4415712‑4415679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.