New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2926199 =70 (0.680)14 (0.180) 5/36 NT 18.0% coding (378/408 nt) ygfX hypothetical protein
?REL606 3944634 = 75 (0.970)intergenic (+23/‑124) proM/aslB tRNA‑Pro/predicted regulator of arylsulfatase activity

CGACAGCATGGACGAAGCTGAATGGCGGGATTTACGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2926238‑2926199
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTCC  >  REL606/3944634‑3944667
                                                                          
CGACAGCATGGACGAAGCTGAATGGCGGGATTTAC                                         >  1:14691047/1‑35
CGACAGCATGGACGAAGCTGAATGGCGGGATTTAC                                         >  1:2536282/1‑35
CGACAGCATGGACGAAGCTGAATGGCGGGATTTAC                                         <  1:512508/35‑1
 GACAGCATGGACGAAGCTGAATGGCGGGATTTACG                                        <  1:17075073/35‑1
 GACAGCATGGACGAAGCTGAATGGCGGGATTTACG                                        >  1:15626863/1‑35
 GACAGCATGGACGAAGCTGAATGGCGGGATTTACG                                        >  1:15313238/1‑35
 GACAGCATGGACGAAGCTGAATGGCGGGATTTACG                                        >  1:20040379/1‑35
 GACAGCATGGACGAAGCTGAATGGCGGGATTTACG                                        <  1:20181009/35‑1
 GACAGCATGGACGAAGCTGAATGGCGGGATTTACG                                        <  1:4361522/35‑1
 GACAGCATGGACGAAGCTGAATGGCGGGATTTACG                                        <  1:9880861/35‑1
 GACAGCATGGACGAAGCTGAATGGCGGGATTTACG                                        <  1:7180690/35‑1
  ACAGCATGGACGAAGCTGAATGGCGGGGTTTACGG                                       >  1:800248/1‑35
  ACAGCATGGACGAAGCTGAATGGCGGGATTTACGG                                       <  1:3197123/35‑1
  ACAGCATGGACGAAGCTGAATGGCGGGATTTACGG                                       <  1:7396395/35‑1
  ACAGCATGGACGAAGCTGAATGGCGGGATTTACGG                                       >  1:7114343/1‑35
  ACAGCATGGACGAAGCTGAATGGCGGGATTTACGG                                       >  1:1983889/1‑35
  ACAGCATGGACGAAGCTGAATGGCGGGATTTACGG                                       >  1:8605421/1‑35
  ACAGCATGGACGAAGCTGAATGGCGGGATTTACGG                                       >  1:6561190/1‑35
   CAGCATGGACGAAGCTGAATGGCGGGATTTACGGC                                      <  1:13832571/35‑1
   CAGCATGGACGAAGCTGAATGGCGGGATTTACGGC                                      >  1:8651830/1‑35
   CAGCATGGACGAAGCTGAATGGCGGGATTTACGGC                                      <  1:18376236/35‑1
   CAGCATGGACGAAGCTGAATGGCGGGATTTACGGC                                      >  1:9404252/1‑35
   CAGCATGGACGAAGCTGAATGGCGGGATTTACGGC                                      <  1:17463137/35‑1
    AGCATGGACGAAGCTGAATGGCGGGGTTTACGGCG                                     >  1:18565133/1‑35
    AGCATGGACGAAGCTGAATGGCGGGATTTACGGCG                                     <  1:3222838/35‑1
    AGCATGGACGAAGCTGAATGGCGGGATTTACGGCG                                     <  1:13517769/35‑1
     GCATGGACGAAGCTGAATGGCGGGATTTACGGCGG                                    >  1:20598345/1‑35
     GCATGGACGAAGCTGAATGGCGGGATTTACGGCGG                                    <  1:18419885/35‑1
     GCATGGACGAAGCTGAATGGCGGGATTTACGGCGG                                    <  1:1008634/35‑1
     GCATGGACGAAGCTGAATGGCGGGATTTACGGCGG                                    <  1:10721629/35‑1
     GCATGGACGAAGCTGAATGGCGGGATTTACGGCGG                                    >  1:14647747/1‑35
      CATGGACGAAGCTGAATGGCGGGGTTTACGGCGGG                                   >  1:944106/1‑35
      CATGGACGAAGCTGAATGGCGGGATTTACGGCGGG                                   >  1:17195392/1‑35
      CATGGACGAAGCTGAATGGCGGGATTTACGGCGGG                                   >  1:18203178/1‑35
      CATGGACGAAGCTGAATGGCGGGATTTACGGCGGG                                   >  1:2241663/1‑35
      CATGGACGAAGCTGAATGGCGGGATTTACGGCGGG                                   >  1:8437052/1‑35
      CATGGACGAAGCTGAATGGCGGGATTTACGGCGGG                                   >  1:19683994/1‑35
       ATGGACGAAGCTGAATGGCGGGGTTTACGGCGGGG                                  >  1:6345010/1‑35
       ATGGACGAAGCTGAATGGCGGGATTTACGGGGGGG                                  >  1:5764306/1‑35
       ATGGACGAAGCTGAATGGCGGGATTTACGGCGGGG                                  >  1:9743561/1‑35
       ATGGACGAAGCTGAATGGCGGGATTTACGGCGGGG                                  >  1:14067716/1‑35
        TGGACGAAGCTGAATGGCGGGATTTACGGCGGGtt                                 >  1:10641219/1‑33
         GGACGAAGCTGAATGGCGGGGTTTACGGCGGGGTT                                >  1:13010953/1‑35
         GGACGAAGCTGAATGGCGGGATTTACGGCGGGGgt                                >  1:12932003/1‑33
         GGACGAAGCTGAATGGCGGGATTTACGGCGGGGTT                                >  1:13746432/1‑35
           ACGAAGCTGAATGGCGGGATTTACGGCGGGGTTTT                              >  1:19695177/1‑35
           ACGAAGCTGAATGGCGGGATTTACGGCGGGGTTTT                              >  1:11101133/1‑35
           ACGAAGCTGAATGGCGGGATTTACGGCGGGGTTTT                              >  1:3338402/1‑35
            CGAAGCTGAATGGCGGGATTTACGGCGGGGTTTTT                             >  1:18576839/1‑35
            CGAAGCTGAATGGCGGGATTTACGGCGGGGTTTTT                             >  1:6591885/1‑35
            CGAAGCTGAATGGCGGGATTTACGGCGGGGTTTTT                             >  1:15115286/1‑35
             GAAGCTGAATGGCGGGATTTACGGCGGGTTTTTTT                            >  1:20471068/1‑35
             GAAGCTGAATGGCGGGATTTACGGCGGGGTTTTTT                            >  1:8556805/1‑35
             GAAGCTGAATGGCGGGATTTACGGCGGGGCTTTTT                            >  1:1767606/1‑35
              AAGCTGAATGGCGGGATTTACGGCGGGGTTTTTTt                           >  1:552348/1‑34
              AAGCTGAATGGCGGGATTTACGGCGGGGTTTTTTG                           >  1:14281889/1‑35
              AAGCTGAATGGCGGGATTTACGGCGGGGTTTTTTG                           >  1:448553/1‑35
               AGCTGAATGGCGGGATTTACGGCGGGGTTTTTTGT                          >  1:20229646/1‑35
                GCTGAATGGCGGGATTTACGGCGGGGTTTTTTttg                         >  1:1796005/1‑32
                                  CGGCTGGGTTTTTTGTTTTCTGTGCATTTCGTCAC       >  1:582581/1‑35
                                  CGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCAC       <  1:1551155/35‑1
                                  CGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCAC       <  1:1235366/35‑1
                                  CGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCAC       <  1:19739324/35‑1
                                   GGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCACT      >  1:5518706/1‑35
                                   GGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCACT      <  1:14537879/35‑1
                                   GGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCACT      >  1:20548076/1‑35
                                   GGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCACT      >  1:16731127/1‑35
                                    GCGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTT     <  1:10543739/35‑1
                                    GCGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTT     >  1:18261777/1‑35
                                    GCGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTT     <  1:12134190/35‑1
                                    GCGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTT     >  1:20108245/1‑35
                                     CGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTT    <  1:8421795/35‑1
                                     CGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTT    >  1:14427718/1‑35
                                     CGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTT    >  1:7968664/1‑35
                                     CGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTT    >  1:17941025/1‑35
                                     CGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTT    >  1:14295387/1‑35
                                     CGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTT    <  1:1235832/35‑1
                                     CGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTT    <  1:4829080/35‑1
                                     CGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTT    >  1:22223/1‑35
                                     CGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTT    >  1:30585/1‑35
                                     CGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTT    <  1:9212573/35‑1
                                     CGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTT    >  1:13963036/1‑35
                                     CGGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTT    >  1:16661892/1‑35
                                      GGGGTTTTTTTTTTTCTGTGCATTTCGTCACTTTC   >  1:17590941/1‑35
                                      GGGGTTTTTTGTTTTCTGTGCATTTCGTGACTTTC   <  1:11631188/35‑1
                                      GGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTC   >  1:18339074/1‑35
                                      GGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTC   >  1:7161502/1‑35
                                      GGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTC   >  1:5763161/1‑35
                                      GGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTC   <  1:5552225/35‑1
                                      GGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTC   >  1:9556799/1‑35
                                      GGGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTC   >  1:3820495/1‑35
                                       GGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTCC  >  1:8818180/1‑35
                                       GGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTCC  >  1:3556642/1‑35
                                       GGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTCC  >  1:9467498/1‑35
                                       GGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTCC  >  1:3962666/1‑35
                                                                          
CGACAGCATGGACGAAGCTGAATGGCGGGATTTACGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2926238‑2926199
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGTTTTTTGTTTTCTGTGCATTTCGTCACTTTCC  >  REL606/3944634‑3944667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.