New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 67279679 (0.770)10 (0.150) 3/32 NT 16.4% coding (181/1539 nt) lnt apolipoprotein N‑acyltransferase
?REL606 1048881 = 49 (0.720)intergenic (‑78/‑349) serT/hyaA tRNA‑Ser/hydrogenase 1, small subunit

Only 100 of 190 total aligned reads displayed.

ATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAAGCCAATAGCGGCAGACTGGAGTGGACGACGGTTA  >  REL606/672762‑672830
                                  |                                  
accccgctGCCAAAGAGACCAAATCCCCAGCCAAA                                    <  1:5689657‑M1/32‑1 (MQ=255)
aTACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA                                    >  1:588896‑M1/1‑35 (MQ=255)
aTACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA                                    >  1:7065226‑M1/1‑35 (MQ=255)
 tACCGCTGCCAAAGAGACCAAATCCCCagccaaag                                   >  1:17962878/1‑35 (MQ=255)
    cGCTGCCAAAGAGACCAAATCCCCagccaaagcca                                <  1:4904267/35‑1 (MQ=255)
    cGCTGCCAAAGAGACCAAATCCCCagccaaagcca                                >  1:10836594/1‑35 (MQ=255)
     gCTGCCAAAGAGACCAAATCCCCagccaaagccaa                               >  1:11016285/1‑35 (MQ=255)
     gCTGCCAAAGAGACCAAATCCCAagccaaagccaa                               <  1:2728813/35‑1 (MQ=255)
     ccTGCCAAAGAGACCAAATCCCCagccaaagccaa                               <  1:6615011/34‑1 (MQ=255)
      cTGCCAAAGAGACCAAATCCCCAGCCAAAGCCAAt                              >  1:14490388/1‑35 (MQ=255)
      cTGCCAAAGAGACCAAATCCCCAGCCAAAGCCAAt                              >  1:8572951/1‑35 (MQ=255)
      cTGCCAAAGAGACCAAATCCCCAGCCAAAGCCAAt                              >  1:12508793/1‑35 (MQ=255)
      cTGCCAAAGAGACCAAATCCCCAGCCAAAGCCAAt                              >  1:17131430/1‑35 (MQ=255)
      cTGCCAAAGAGACCAAATCCCCAGCCAAAGCCAAt                              >  1:9506027/1‑35 (MQ=255)
       tGCCAAAGAGACCAAATCCCCAGCCAAAGCCAATa                             >  1:8733815/1‑35 (MQ=255)
          cAAAGAGACCAAATCCCCAGCCAAAGTCAATAGCg                          >  1:5115277/1‑35 (MQ=255)
          cAAAGAGACCAAACCCCCAGCCAAAGCCAATAGCg                          <  1:12826746/35‑1 (MQ=255)
           aaaGAGACCAAATCCCCAGCCAAAGCCAATAGCgg                         >  1:11617168/1‑35 (MQ=255)
           aaaGAGACCAAATCCCCAGCCAAAGCCAATAGCgg                         >  1:1844859/1‑35 (MQ=255)
           aaaGAGACCAAATCCCCAGCCAAAGCCAATAGCgg                         >  1:11316122/1‑35 (MQ=255)
           aaaGAGACCAAATCCCCAGCCAAAGCCAATAGCgg                         >  1:539616/1‑35 (MQ=255)
            aaGAGACCAAATCCCCAGCCAAAGCCAATAGCGGc                        >  1:15755028/1‑35 (MQ=255)
             agagACCAAATCCCCAGCCAAAGCCAATAGCGGCa                       >  1:8002491/1‑35 (MQ=255)
             agagACCAAATCCCCAGCCAAAGCCAATAGCGGCa                       >  1:14870703/1‑35 (MQ=255)
             agagACCAAATCCCCAGCCAAAGCCAATAGCGGCa                       >  1:8781251/1‑35 (MQ=255)
             agagACCAAATCCCCAGCCAAAGCCAATAGCGGCa                       >  1:9035506/1‑35 (MQ=255)
              gagaCCAAATCCCCAGCCAAAGCCAATAGCGGCAg                      >  1:14274940/1‑35 (MQ=255)
              gagaCCAAATCCCCAGCCAAAGCCAATAGCGGCAg                      >  1:11993504/1‑35 (MQ=255)
               agaCCAAATCCCCAGCCAAAGCCAATAGCGGCAgg                     >  1:20245182/1‑34 (MQ=255)
               agaCCAAATCCCCAGCCAAAGCCAATAGCGGCAGa                     >  1:19937372/1‑35 (MQ=255)
               agaCCAAATCCCCAGCCAAAGCCAATAGCGGCAGa                     >  1:7437387/1‑35 (MQ=255)
               agaCCAAATCCCCAGCCAAAGCCAATAGCGGCAGa                     >  1:9438803/1‑35 (MQ=255)
                gaCCAAATCCCCAGCCAAAGCCAATAGCGGCAGAc                    >  1:18155977/1‑35 (MQ=255)
                 gccaAAACCCCAGCCAAAagtgcattgatagcgtg                   <  1:20381842‑M1/34‑18 (MQ=255)
                 cccaAAACCCCAGCCAAAagtgcattgatagcgtg                   <  1:11521607‑M1/34‑18 (MQ=255)
                 ccaaaaCCCCCAGCAAAAGCCAATAGCGGCAGACt                   <  1:12252094/32‑1 (MQ=25)
                 aCCAAATCCCCAGCCAAAGCCAATAGCGGCAGACt                   >  1:11237007/1‑35 (MQ=255)
                 aCCAAATCCCCAGCCAAAGCCAATAGCGGCAGACt                   >  1:2689646/1‑35 (MQ=255)
                 aCCAAATCCCCAGCCAAAGCCAATAGCGGCAGACt                   >  1:6902922/1‑35 (MQ=255)
                  ccAAATCCCCAGCCAAAGCCAATAGCGGCAGACTg                  >  1:13944961/1‑35 (MQ=255)
                   cAAATCCCCAGCCAAAGCCAATAGCGGCAGACTgg                 >  1:14916695/1‑35 (MQ=255)
                   cAAAACCCCAGCCAAAagtgcattgatagcgtgaa                 <  1:10665819‑M1/35‑20 (MQ=255)
                   aaaaaCCCCAGCCAAAagtgcattgatagcgtgaa                 <  1:924550‑M1/34‑20 (MQ=255)
                    aaaCCCCCACCAAAAGCCAATAGCGGCAGACTGGa                <  1:5631174/35‑1 (MQ=25)
                    aaaACCCCAGCCAAAagtgcattgatagcgtgaaa                <  1:10316748‑M1/35‑21 (MQ=255)
                     accccccACCAAAAGCCAATAGCGGCAGACTGGAg               <  1:17521459/32‑1 (MQ=25)
                     aaaccccagcCAAAagtgcattgatagcgtgaaat               <  1:3704‑M1/32‑22 (MQ=255)
                     aaTCCCCAGCCAAAGCCAATAGCGGCAGACTGGAg               >  1:9363498/1‑35 (MQ=255)
                     aaTCCCCAGCCAAAGCCAATAGCGGCAGACTGGAg               >  1:13257458/1‑35 (MQ=255)
                      aaccccagCCAAAagtgcattgatagcgtgaaata              <  1:9153490‑M1/33‑23 (MQ=255)
                      aTCCCCAGCCAAAGCCAATAGCGGCAGACTGGAGt              >  1:3313051/1‑35 (MQ=255)
                      aTCCCCAGCCAAAGCCAATAGCGGCAGACTGGAGt              >  1:10120436/1‑35 (MQ=255)
                       tCCCCAGCCAAAGCCAATAGCGGCAGACTGGAGTg             >  1:16365586/1‑35 (MQ=255)
                       cccccACCCAAAGCCAATAGCGGCAGACTGGAGTg             <  1:8934048/34‑1 (MQ=255)
                       ccccaAGCAAAAGCCAATAGCGGCAGACTGGAGTg             <  1:463629/34‑1 (MQ=25)
                       accccaGCCAAAagtgcattgatagcgtgaaataa             <  1:20069333‑M1/34‑24 (MQ=255)
                        ccccGGCCAAAGCCAATAGCGGCAGACTGGAGTgg            <  1:3126811/35‑1 (MQ=255)
                        ccccAGCCAAAagtgcattgatagcgtgaaataac            <  1:18752642‑M1/35‑25 (MQ=255)
                        ccccAGCCAAAagtgcattgatagcgtgaaataac            <  1:17245407‑M1/35‑25 (MQ=255)
                        ccccAGCCAAAagtgcattgatagagtgaaataac            <  1:4236548‑M1/35‑25 (MQ=255)
                        ccccACCAAAAGCCAATAGCGGCAGACTGGAGTgg            <  1:2541923/35‑1 (MQ=38)
                         cccAGCCAAAGCCAATAGCGGGAGACTGGGGTGga           >  1:15704780/1‑35 (MQ=37)
                         cccAGCCAAAGCCAATAGCGGCAGACTGGAGGGga           >  1:5996411/1‑35 (MQ=255)
                          ccAGCCAAAagtgcattgatagcgtgaaataacag          <  1:11767286‑M1/35‑27 (MQ=255)
                          ccAGCAAAAGCCAATAGCGGCAGACTGGAGTGgac          <  1:10083770/35‑1 (MQ=255)
                           cacccaaagccaaTAGCGGCAGACTGGAGTGgacg         <  1:8455236/32‑1 (MQ=255)
                           cacccaaagccaaTAGCGGCAGACTGGAGTGgacg         <  1:17956091/32‑1 (MQ=255)
                           cAGCCGAAagtgcattgatagcgtgaaataacagc         <  1:20133‑M1/35‑28 (MQ=255)
                           cAGCCAAAGCCAATAGCGGCAGACTGGAGTGgacg         >  1:2813132/1‑35 (MQ=255)
                           cAGCCAAAGCCAATAGCGGCAGACTGGAGTGgacg         >  1:13597257/1‑35 (MQ=255)
                           cAGCCAAAGCCAATAGCGGCAGACTGGAGTGgacg         >  1:5348709/1‑35 (MQ=255)
                           cAGCAAAAGCCAATAGCGGCAGACTGGAGTGgacg         <  1:1043951/35‑1 (MQ=255)
                            agccaaagccaaTAGCGGCAGACTGGAGGGgacga        >  1:3493860/1‑35 (MQ=255)
                            agcaaaagccaaTAGCGGCAGACTGGAGTGgacga        <  1:14559075/35‑1 (MQ=255)
                            acacaaagccaaTAGCGGCAGACTGGAGTGgacga        <  1:1729899/32‑1 (MQ=255)
                            aGCCAAAagtgcattgatagcgtgaaataacagca        >  1:9773785‑M1/1‑7 (MQ=255)
                            aGCCAAAagtgcattgatagcgtgaaataacagca        >  1:5040993‑M1/1‑7 (MQ=255)
                            aGCCAAAagtgcattgatagcgtgaaataacagca        >  1:19262024‑M1/1‑7 (MQ=255)
                            aGCCAAAagtgcattgatagcgtgaaataacagca        <  1:19392626‑M1/35‑29 (MQ=255)
                             gccaaagccaaTAGCGGCAGACTGGAGTGgacgac       <  1:3943829/35‑1 (MQ=255)
                             gCCAAAagtgcattgatagcgtgaaataacagcag       <  1:4376230‑M1/35‑30 (MQ=255)
                             gCCAAAagtgcattgatagcgtgaaataacagcag       <  1:16496329‑M1/35‑30 (MQ=255)
                             gCCAAAagtgcattgatagcgtgaaataacagcag       >  1:19100133‑M1/1‑6 (MQ=255)
                             gCCAAAagtgcattgatagcgtgaaataacagcag       >  1:18940060‑M1/1‑6 (MQ=255)
                             gCCAAAagtgcattgatagcgtgaaataacagaag       <  1:15930686‑M1/35‑30 (MQ=255)
                              ccaaagccaaTAGCGGCATACTGGAGTGGacgacg      >  1:13084468/1‑35 (MQ=255)
                              ccaaagccaaTAGCGGCAGACTGGAGTGGacgacg      <  1:11594188/35‑1 (MQ=255)
                              ccAAAagtgcattgatagcgtgaaataacagcaga      >  1:7579899‑M1/1‑5 (MQ=255)
                               caaagccaaTAGCGGCAGACTGGAGTGGACGACgg     >  1:13535326/1‑35 (MQ=255)
                               cAAAagtgcattgatagcgtgaaataacagcagat     >  1:20000678‑M1/1‑4 (MQ=255)
                               aaaagccaaTAGCGGCAGACTGGAGTGGACGACgg     <  1:12869818/34‑1 (MQ=255)
                               aaaagccaaTAGCGGCAGACTGGAGTGGACGACgg     <  1:8867603/34‑1 (MQ=255)
                                aaagccaaTAGCGGCAGACTGGAGTGGACGGCggg    >  1:14063661/1‑34 (MQ=255)
                                aaagccaaTAGCGGCAGACTGGAGTGGACGACGGt    <  1:19626056/35‑1 (MQ=255)
                                aaaagtgcattgatagcgtgaaataacagcagatt    <  1:2946377‑M1/35‑33 (MQ=255)
                                 aagccaaTAGCGGCAGACTGGAGTGGACGACGGtt   <  1:8312411/35‑1 (MQ=255)
                                 aaagtgcattgatagcgtgaaataacagcagattg   >  1:12350611‑M1/1‑2 (MQ=255)
                                  agccaaTAGCGGCAGACTGGAGTGGACGACGGTTa  <  1:6274548/35‑1 (MQ=255)
                                  aagtgcatttatagcgtgaaataacagcagattga  >  1:17419212‑M1/1‑1 (MQ=255)
                                  aagtgcattgatagcgtgaaataacagcagattga  >  1:7638751‑M1/1‑1 (MQ=255)
                                  |                                  
ATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAAGCCAATAGCGGCAGACTGGAGTGGACGACGGTTA  >  REL606/672762‑672830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.