New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3944627 =101 (0.980)9 (0.120) 3/34 NT 13.8% intergenic (+16/‑131) proM/aslB tRNA‑Pro/predicted regulator of arylsulfatase activity
?REL606 = 4275759 41 (0.560)coding (189/690 nt) yjcO hypothetical protein

Only 100 of 121 total aligned reads displayed.

GCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGC  >  REL606/4275725‑4275793
                                  |                                   
gcgcCAGCAGCGCGCAGGCATCAGCATCACCGCTg                                     >  1:15833509/1‑35 (MQ=255)
 cgcCAGCAGCGCGCAGGCATCAGCATCACCGCTGt                                    <  1:7913655‑M2/35‑2 (MQ=255)
  gcCAGCAGCGCGCAGGCATCAGCATCACCGCTGtc                                   <  1:5503254‑M2/35‑3 (MQ=255)
  gcCAGCAGCGCGCAGGCATCAGCATCACCGCTGtc                                   <  1:9203497‑M2/35‑3 (MQ=255)
  gcCAGCAGCGCGCAGGCATCAGCATCACCGCTGtc                                   <  1:4822544‑M2/35‑3 (MQ=255)
  gcCAGCAGCGCGCAGGCATCAGCATCACCGCTGtc                                   <  1:3742075‑M2/35‑3 (MQ=255)
  gcCAGCAGCGCGCAGGCATCAGCATCACCGCTGtc                                   <  1:3578181‑M2/35‑3 (MQ=255)
   ccAGCAGCGCGCAGGCATCAGCATCACCGCTGtcg                                  <  1:13094306‑M2/35‑4 (MQ=255)
   ccAGCAGCGCGCAGGCATCAGCATCACCGCTGtcg                                  >  1:6007488‑M2/1‑32 (MQ=255)
    cagcagCGCGCAGGCATCAGCATCACCGCTGtcgg                                 <  1:4977977‑M2/35‑5 (MQ=255)
    cagcagCGCGCAGGCATCAGCATCACCGCTGtcgg                                 <  1:10150317‑M2/35‑5 (MQ=255)
    cagcagCGCGCAGGCATCAGCATCACCGCTGtcgg                                 <  1:16654756‑M2/35‑5 (MQ=255)
    cagcagCGCGCAGGCATCAGCATCACAGCTGtcgg                                 <  1:11470032‑M2/35‑5 (MQ=255)
     agcagcGCGCAGGCATCAGCATCACCGCTGtcggc                                >  1:13538694‑M2/1‑30 (MQ=255)
     agcagcGCGCAGGCATCAGCATCACCGCTGtcggc                                <  1:16218538‑M2/35‑6 (MQ=255)
     agcagcGCGCAGGCATCAGCATCACCGCTGtcggc                                <  1:19397260‑M2/35‑6 (MQ=255)
     agcagcGCGCAGGCATCAGCATCACCGCTGtcggc                                >  1:11367743‑M2/1‑30 (MQ=255)
     agcagcGCGCAGGCATCAGCATCACCGCTGtcggc                                >  1:2839373‑M2/1‑30 (MQ=255)
      gcagcGCGCATGCATCAGCATCACCGCTGtcggcg                               <  1:8316812‑M2/35‑7 (MQ=255)
      gcagcGCGCAGGCATCAGCATCACCGCTGtcggcg                               >  1:18368063‑M2/1‑29 (MQ=255)
      gcagcGCGCAGGCATCAGCATCACCGCTGtcggcg                               <  1:971162‑M2/35‑7 (MQ=255)
       cagcGCGCAGGCATCAGCATCACCGCTGtcggcgg                              <  1:18247608‑M2/35‑8 (MQ=255)
       cagcGCGCAGGCATCAGCATCACCGCTGtcggcgg                              <  1:2941059‑M2/35‑8 (MQ=255)
       cagcGCGCAGGCATCAGCATCACCGCTGtcggcgg                              >  1:10085108‑M2/1‑28 (MQ=255)
        agcGCGCAGGCATCAGCATCACCGCTGtcggcggg                             <  1:10252237‑M2/35‑9 (MQ=255)
        agcGCGCAGGCATCAGCATCACCGCTGTCggcggc                            <  1:4561493/35‑1 (MQ=255)
         gcgcgcAGGCATCAGCATCACCGCTGtcggcgggc                            <  1:19750599‑M2/35‑10 (MQ=255)
         gcgcgcAGGCATCAGCATCACCGCTGTCGGTGGCt                           >  1:19425487/1‑35 (MQ=255)
         gcgcgcAGGCATCAGCATCACCGCTGTCGGCGGCt                           <  1:9116906/35‑1 (MQ=255)
          cgcgcAGGCATCAGCATCACCGCTGtcggcggggt                           <  1:613562‑M2/35‑11 (MQ=255)
          cgcgcAGGCATCAGCATCACCGCTGtcggcggggt                           <  1:19733139‑M2/35‑11 (MQ=255)
          cgcgcAGGCATCAGCATCACCGCTGTCGGCGGCtt                          <  1:9558538/35‑1 (MQ=255)
          cgcgcAGGCATCAGCATCACCGCTGTCGGCGGCtt                          <  1:15015779/35‑1 (MQ=255)
           gcgcAGGCATCAGCATCACCGCTGTCGGCGGCttt                         <  1:4460224/35‑1 (MQ=255)
           gcgcAGGCATCAGCATCACCGCTGTCGGCGGCttt                         <  1:4080983/35‑1 (MQ=255)
           gcgcAGGCATCAGCATCACCGCTGTCGGCGGCttt                         <  1:12446213/35‑1 (MQ=255)
            cgcAGGCATCAGCATCACCGCTGtcggcggggttc                         <  1:7552102‑M2/35‑13 (MQ=255)
            cgcAGGCATCAGCATCACCGCTGTCGGCGGCTTTc                        <  1:19871118/35‑1 (MQ=255)
            cgcAGGCATCAGCATCACCGCTGTCGGCGGCTTTc                        <  1:13586592/35‑1 (MQ=255)
            cgcAGGCATCAGCATCACCGCTGGCGCGCGGCtgg                         >  1:5535366/1‑33 (MQ=17)
             gcAGGCATCAGCATCACCGCTGtcggcgggttttt                        <  1:17758606‑M2/35‑14 (MQ=255)
             gcAGGCATCAGCATCACCGCTGtcggcggggtttt                        <  1:12238301‑M2/35‑14 (MQ=255)
             gcAGGCATCAGCATCACCGCTGtcggcggggtttt                        <  1:11225983‑M2/35‑14 (MQ=255)
             gcAGGCATCAGCATCACCGCTGtcggcggggtttt                        <  1:13050930‑M2/35‑14 (MQ=255)
             gcAGGCATCAGCATCACCGCTGtcggcggggttct                        <  1:19076445‑M2/35‑14 (MQ=255)
             gcAGGCATCAGCATCACCGCTGtcggcggggttct                        <  1:13309727‑M2/35‑14 (MQ=255)
              cAGGCATCAGCATCACCGCTGtcggcggggttttt                       <  1:7977200‑M2/35‑15 (MQ=255)
              cAGGCATCAGCATCACCGCTGTCGGCGGCTTTCtg                      <  1:3189897/35‑1 (MQ=255)
              cAGGCATCAGCATCACCGCTGTCGGCGGCTTTCtg                      <  1:7675445/35‑1 (MQ=255)
               gggCATCAGCATCACAGCTGTCGGCGGCTTTCtgt                     <  1:14042153/34‑1 (MQ=255)
               aGGCATCAGCATCACCGCTGtcggcggggtttttt                      <  1:12885840‑M2/35‑16 (MQ=255)
               aGGCATCAGCATCACCGCTGtcggcggggtttttt                      <  1:6409818‑M2/35‑16 (MQ=255)
               aGGCATCAGCATCACCGCTGtcggcggggttttgt                      <  1:13747123‑M2/35‑16 (MQ=255)
               aGGCATCAGCATCACCGCTGTCGGCGGGCTTCttg                     >  1:11988444/1‑33 (MQ=25)
               aGGCATCAGCATCACCGCTGTCGGCGGCTTTCtgt                     <  1:17486639/35‑1 (MQ=255)
               aGGCATCAGCATCACCGCTGTCGGCGGCTTTCtgt                     <  1:530337/35‑1 (MQ=255)
                 gcatcagcatcaCCGCTGTCGGCGGCTTTCTGTGc                   <  1:12254904/35‑1 (MQ=255)
                 ccatcagcatcaCCGCTGTCGGCGGCTTTCTGTGc                   <  1:19749082/34‑1 (MQ=255)
                  catcggcatcaCCGCTGTCGGCGGCTTTCTGTGcc                  <  1:20112731/35‑1 (MQ=255)
                  catcagcatcaCCGCTGtcggcggggtttttttgc                   <  1:11548488‑M2/35‑19 (MQ=255)
                  catcagcatcaCCGCTGTCGGCGGCTTTCTGTGcc                  <  1:19779251/35‑1 (MQ=255)
                    tcaccatcaCCGCTGTCGGCGGCTTTCTGTGCCCa                <  1:18176771/35‑1 (MQ=255)
                     cagcatcaCCGCTGTCGGCGGCTTTCTGTGCCCaa               <  1:12126391/35‑1 (MQ=255)
                      agcatcaCCGCTGTCGGCGGCTTTCTGTGCCCAat              <  1:1849758/35‑1 (MQ=255)
                      agcatcaCCGCTGTCGGCGGCTTTCTGTGCCCAat              <  1:11978882/35‑1 (MQ=255)
                      agcatcaCCGCTGTCGGCGGATTTCTGTGCCCAat              <  1:2611759/35‑1 (MQ=255)
                      accatcaCCGCTGTCGGCGGCTTTCTGTGCCCAat              <  1:20560355/33‑1 (MQ=255)
                       gcatcaCCGCTGTCGGCGGCTTTCTGTGCCCAata             <  1:17171827/35‑1 (MQ=255)
                       gcatcaCCGCTGTCGGCGGCTTTCTGTGCCCAata             <  1:11103706/35‑1 (MQ=255)
                       gcatcaCCGCTGTCGGCGGCTTTCTGTGCCCAata             <  1:179900/35‑1 (MQ=255)
                        cctcaCCGCTGTCGGCGGCTTTCTGTGCCCAatat            <  1:6268594/33‑1 (MQ=255)
                        catcaCCGCTGTCGGCGGCTTTCTGTGCCCAatat            <  1:9799602/35‑1 (MQ=255)
                        catcaCCGCTGTCGGCGGCTTTCTGTGCCCAatat            <  1:19984237/35‑1 (MQ=255)
                        catcaCAGCTGTCGGCGGCTTTCTGTGCCCAatat            <  1:15502332/35‑1 (MQ=255)
                         atcaCCGCTGTCGGCGGGGTTTTTTGCCCCAAAtt           >  1:14243621/1‑35 (MQ=2)
                         atcaCCGCTGTCGGCGGCTTTCTGTGCCCAATAtt           <  1:5446861/35‑1 (MQ=255)
                         atcaCCGCTGTCGGCGGCTTTCTGTGCCCAATAtt           <  1:18368962/35‑1 (MQ=255)
                         atcaCCGCTGTCGGAGGCTTTCTGTGCCCAATAtt           <  1:9087340/35‑1 (MQ=255)
                          tccccGCTGTCGGCGGCTTTCTGTGCCCAATATTc          <  1:574243/32‑1 (MQ=255)
                          tcaCCGCTGTCGGCGGCTTTCTGTGCCCAATATTc          <  1:4689537/35‑1 (MQ=255)
                          tcaCCGCTGTCGGCGGCTTTCTGTGCCCAATATTc          <  1:10185902/35‑1 (MQ=255)
                          tcaCCGCTGTCGGCGGCTTTCTGTGCACAATATTc          <  1:19290155/35‑1 (MQ=255)
                           caCCGCTGTCGGCGGCTTTCTGTGCCCAATATTCg         <  1:11978717/35‑1 (MQ=255)
                            aCCGCTGTCGGCGGCTTTCTGTGCCCAATATTCgg        <  1:14793364/35‑1 (MQ=255)
                             ccGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGc       <  1:12174057/35‑1 (MQ=255)
                             ccGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGc       <  1:13956420/35‑1 (MQ=255)
                             cagCTGTCGGCGGCTTTCTGTGCCCAATATTCGGc       <  1:14641163/33‑1 (MQ=255)
                              cGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCt      <  1:18539826/35‑1 (MQ=255)
                              cGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCt      <  1:900998/35‑1 (MQ=255)
                              cGCTGTCGGCGGCTTTCTGTGCCCAATATTAGGCt      <  1:5052376/35‑1 (MQ=255)
                               gCTTTCGGCGGCTTTCTGTGCCCAATATTCGGCtt     <  1:19666840/35‑1 (MQ=255)
                               gCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCtt     <  1:14579933/35‑1 (MQ=255)
                               gCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCtt     <  1:11150320/35‑1 (MQ=255)
                               gCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCtt     <  1:2629922/35‑1 (MQ=255)
                                cTGTCGGCGGCTTTCTGTGCCCAATATTCGGCttt    <  1:1814355/35‑1 (MQ=255)
                                cTGTCGGCGGCTTTCTGTGCCCAATATTCGGCttt    <  1:5542822/35‑1 (MQ=255)
                                 tGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTg   <  1:771166/35‑1 (MQ=255)
                                 tGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTg   <  1:8280644/35‑1 (MQ=255)
                                 tGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTg   <  1:11702402/35‑1 (MQ=255)
                                  gTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGc  <  1:10147977/35‑1 (MQ=255)
                                  |                                   
GCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGC  >  REL606/4275725‑4275793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.