New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2183026 =73 (0.710)12 (0.160) 5/34 NT 15.2% intergenic (+74/‑56) yohK/cdd predicted inner membrane protein/cytidine deaminase
?REL606 = 3512380 82 (1.130)intergenic (‑122/‑211) yhhX/yhhY predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase

TCATGTAATGGGATAACAGTTTACGAACCCGTTGTGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2183066‑2183026
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctttTTTTTTGATCTTTCGTTCTCAATTTATCCACGGG  <  REL606/3512380‑3512347
                                                                           
TCATGTAATGGGATAACAGTTTACGAACCCGTTGT                                          >  1:9297862/1‑35
TCATGTAATGGGATAACAGTTTACGAACCCGTTGT                                          <  1:17318191/35‑1
TCATGTAATGGGATAACAGTTTACGAACCCGTTGT                                          <  1:18351506/35‑1
TCATGTAATGGGATAACAGTTTACGAACCCGTTGT                                          >  1:6567333/1‑35
 CATGTAATGGGATAACAGTTTACGAACCCGTTGTG                                         >  1:16896148/1‑35
 CATGTAATGGGATAACAGTTTACGAACCCGTTGTG                                         >  1:19004479/1‑35
 CATGTAATGGGATAACAGTTTACGAACCCGTTGTG                                         <  1:375017/35‑1
 CATGTAATGGGATAACAGTTTACGAACCCGTTGTG                                         <  1:5589483/35‑1
 CATGTAATGGGATAACAGTTTACGAACCCGTTGTG                                         >  1:13177746/1‑35
 CATGTAATGGGATAACAGTTTACGAACCCGTTGTG                                         <  1:7741339/35‑1
 CATGTAATGGGATAACAGTTTACGAACCCGTTGTG                                         >  1:7812673/1‑35
 CATGTAATGGGATAACAGTTTACGAACCCGTTGTG                                         <  1:8503428/35‑1
  ATGTAATGGGATAACAGTTTACGAACCCGTTGTGt                                        >  1:6464718/1‑34
  ATGTAATGGGATAACAGTTTACGAACCCGTTGTGG                                        >  1:8140483/1‑35
  ATGTAATGGGATAACAGTTTACGAACCCGTTGTGG                                        >  1:14109780/1‑35
  ATGTAATGGGATAACAGTTTACGAACCCGTTGTGG                                        >  1:19857814/1‑35
  ATGTAATGGGATAACAGTTTACGAACCCGTTGTGG                                        >  1:8213042/1‑35
  ATGTAATGGGATAACAGTTTACGAACCCGTTGTGG                                        <  1:15159542/35‑1
  ATGTAATGGGATAACAGTTTACGAACCCGTTGTGG                                        <  1:1163332/35‑1
  ATGTAATGGGATAACAGTTTACGAACCCGTTGTGG                                        <  1:9859306/35‑1
  ATGTAATGGGACAACAGTTTACGAACCCGTTGTGG                                        >  1:183747/1‑35
   TGTAATGGGATAACAGTTTACGAACCCGTTGTGGC                                       <  1:5796163/35‑1
   TGTAATGGGATAACAGTTTACGAACCCGTTGTGGC                                       >  1:20270393/1‑35
   TGTAATGGGATAACAGTTTACGAACCCGTTGTGGC                                       >  1:1929853/1‑35
   TGTAATGGGATAACAGTTTACGAACCCGTTGTGGC                                       >  1:19036540/1‑35
   TGTAATGGGATAACAGTTTACGAACCCGTTGTGGC                                       >  1:15774711/1‑35
    GTAATGGGATAACAGTTTACGAACCCGTTGTGGCT                                      <  1:10771781/35‑1
    GTAATGGGATAACAGTTTACGAACCCGTTGTGGCT                                      >  1:93125/1‑35
    GTAATGGGATAACAGTTTACGAACCCGTTGTGGCT                                      <  1:7112413/35‑1
    GTAATGGGATAACAGTTTACGAACCCGTTGTGGCT                                      >  1:3624089/1‑35
    GTAATGGGATAACAGTTTACGAACCCGTTGTGGCT                                      <  1:3386705/35‑1
    GTAATGGGATAACAGTTTACGAACCCGTTGTGGCT                                      <  1:17858364/35‑1
     TAATGGGATAACAGTTTACGAACCCGTTGTTGCTT                                     >  1:15579003/1‑35
     TAATGGGATAACAGTTTACGAACCCGTTGTGGCTT                                     <  1:16928712/35‑1
     TAATGGGATAACAGTTTACGAACCCGTTGTGGCTT                                     >  1:13256123/1‑35
     TAATGGGATAACAGTTTACGAACCCGTTGTGGCTT                                     >  1:15061115/1‑35
      AATGGGATAACAGTTTACGAACCCGTTGTGGCTTT                                    >  1:11809133/1‑35
      AATGGGATAACAGTTTACGAACCCGTTGTGGCTTT                                    >  1:1189500/1‑35
      AATGGGATAACAGTTTACGAACCCGTTGTGGCTTT                                    >  1:16506494/1‑35
      AATGGGATAACAGTTTACGAACCCGTTGTGGCTTT                                    >  1:15386371/1‑35
      AATGAGATAACAGTTTACGAACCCGTTGTGGCTTT                                    >  1:7787117/1‑35
       ATGGGATAACAGTTTACGAACCCGTTGTGGCTTTT                                   >  1:15918728/1‑35
       ATGGGATAACAGTTTACGAACCCGTTGTGGCTTTT                                   >  1:3153866/1‑35
        TGGGATAACAGTTTACGAACCCGTTGTGGCTTTTT                                  >  1:17527816/1‑35
        TGGGATAACAGTTTACGAACCCGTTGTGGCTTTTT                                  >  1:14660304/1‑35
         GGGATAACAGTTTACGAACCCGTTGTGGCTTTTTa                                 >  1:1496584/1‑34
         GGGATAACAGTTTACGAACCCGTTGTGGCTTTTTT                                 >  1:4380870/1‑35
          GGATAACAGTTTACGAACCCGTTGTGGCTTTTTat                                >  1:17761369/1‑33
          GGATAACAGTTTACGAACCCGTTGTGGCTTTTTTT                                >  1:18687608/1‑35
          GGATAACAGTTTACGAACCCGTTGTGGCTTTTTTT                                >  1:15467329/1‑35
          GGATAACAGTTTACGAACCCGTTGTGGCTTTTTTT                                >  1:12334072/1‑35
           GATAACAGTTTACGAACCCGTTGTGGCTTTTTATT                               >  1:14916440/1‑35
            ATAACAGTTTACGAACCCGTTGTGGCTTTTTTTTT                              >  1:17182702/1‑35
             TAACAGTTTACGAACCCGTTGTGGCTTTTTTTgtt                             >  1:6497796/1‑32
             TAACAGTTTACGAACCCGTTGTGGCTTTTTTTTTG                             >  1:5139475/1‑35
              AACAGTTTACGAACCCGTTGTGGCTTTTTTTGTGA                            >  1:10940642/1‑35
              AACAGTTTACGAACCCGTTGTGGCTTTTTATTTGA                            >  1:17592800/1‑35
               ACAGTTTACGAACCCGTTGTGGCTTTTTTTTTGAT                           >  1:4710806/1‑35
               ACAGTTTACGAACCCGTTGTGGCTTTTTATTTGAT                           >  1:15470787/1‑35
                CAGTTTACGAACCCGTTGTGGCTTTTTTTTTGATt                          >  1:11285710/1‑34
                 AGTTTACGAACCCGTTGTGGCTTTTTTTGTGATCT                         >  1:7287443/1‑35
                 AGTTTACGAACCCGTTGTGGCTTTTTATTTGATCT                         >  1:658693/1‑35
                  GTTTACGAACCCGTTGTGGCTTTTTTTTTGATttg                        >  1:17808384/1‑32
                   TTTACGAACCCGTTGTGGCTTTTTTTTTGGTCTTa                       >  1:7269684/1‑34
                   TTTACGAACCCGTTGTGGCTTTTTTTTTGATCTTa                       >  1:4304177/1‑34
                                  TGGCTTTTTTTTTGATCTTTCGTTCTCAATTTATC        >  1:11777784/1‑35
                                  TGGCTTTTTTTTTGATCTTTCGTTCTCAATTTATC        <  1:15057371/35‑1
                                   ggtTTTTTTTTTGATCTTTCGTTCTCAATTTATCC       <  1:3803507/32‑1
                                   GGCTTTTTTTTTGATCTTTCGTTCTCAATTTATCC       >  1:16009778/1‑35
                                    tCTTTTTTTTTGATCTTTCGTTCTCAATTTATCCA      <  1:2797749/34‑1
                                    ggcTTTTTTTTGATCTTTCGTTCTCAATTTATCCA      <  1:9527668/32‑1
                                    GCTTTTTTTTTGATCTTTCGTTCTCAATTTATCCA      >  1:16714711/1‑35
                                    GCTTTTTTTTTGATCTTTCGTTCTCAATTTATCCA      <  1:2114575/35‑1
                                    GCTTTTTTTTTGATCTTTCGTTCTCAATTTATCCA      >  1:7777932/1‑35
                                     CTTTTTTTTTGATCTTTCGTTCTCAATTTATCCAC     >  1:8367429/1‑35
                                     CTTTTTTTTTGATCTTTCGTTCTCAATTTATCCAC     >  1:6123365/1‑35
                                     CTTTTTTTTTGATCTTTCGTTCTCAATTTATCCAC     >  1:12164257/1‑35
                                     CTTTTTTTTTGATCTTTCGTTCTCAATTTATCCAC     <  1:16028015/35‑1
                                     CTTTTTTTTTGATCTTTCGTTCTCAATTTATCCAC     <  1:19729622/35‑1
                                      TTTTTTTTTGATCTTTCGTTCTCAATTTATCCACG    >  1:11692822/1‑35
                                      TTTTTTTTTGATCTTTCGTTCTCAATTTATCCACG    >  1:9480778/1‑35
                                      TTTTTTTTTGATCTTTCGTTCTCAATTTATCCACG    >  1:4118029/1‑35
                                      TTTTTTTTTGATCTTTCGTTCTCAATTTATCCACG    >  1:16434492/1‑35
                                      TTTTTTTTTGATCTTTCGTTCTCAATTTATCCACG    <  1:20053322/35‑1
                                      TTTTTTTTTGATCTTTCGTTCTCAATTTATCCACG    <  1:18576006/35‑1
                                       TTTTTTTTGATCTTTCGTTCTCAATTTATCCACGG   <  1:12923617/35‑1
                                       TTTTTTTTGATCTTTCGTTCTCAATTTATCCACGG   <  1:5160531/35‑1
                                        TTTTTTTGATCTTTCGTTCTCAATTTATCCACGGG  <  1:13899413/35‑1
                                        TTTTTTTGATCTTTCGTTCTCAATTTATCCACGGG  >  1:2770833/1‑35
                                        TTTTTTTGATCTTTCGTTCTCAATTTATCCACGGG  >  1:19402635/1‑35
                                        TTTTTTTGATCTTTCGTTCTCAATTTATCCACGGG  <  1:9487265/35‑1
                                        TTTTTTTGATCTTTCGTTCTCAATTTATCCACGGG  <  1:19330174/35‑1
                                        TTTTTTTGATCTTTCGATCTCAATTTATCCACGGG  >  1:19745571/1‑35
                                                                           
TCATGTAATGGGATAACAGTTTACGAACCCGTTGTGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2183066‑2183026
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctttTTTTTTGATCTTTCGTTCTCAATTTATCCACGGG  <  REL606/3512380‑3512347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.