New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1494073 = | 76 (0.740) | 15 (0.170) | 7/42 | NT | 16.6% | coding (657/1062 nt) | yncE | hypothetical protein |
? | REL606 | 4351442 = | 84 (0.930) | intergenic (+50/‑88) | groEL/yjeI | chaperonin GroEL/hypothetical protein |
GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1494109‑1494073 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAG > REL606/4351442‑4351475 GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGC < 1:9517337/35‑1 GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGC > 1:8354371/1‑35 GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGC < 1:2472998/35‑1 GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGC < 1:17092079/35‑1 GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGC < 1:19531007/35‑1 TGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCT < 1:8806437/35‑1 TGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCT < 1:5095467/35‑1 TGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCT > 1:4977517/1‑35 TGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCT > 1:17463966/1‑35 TGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCT > 1:17778862/1‑35 nCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG > 1:9369610/2‑35 GCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG < 1:1466311/35‑1 GCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG < 1:4177067/35‑1 GCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG < 1:20417044/35‑1 GCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG < 1:16989190/35‑1 CTCTTTGCCGTCATCCAGCATCTTTTTACGGCTGG > 1:4874778/1‑35 CTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTGG > 1:11037933/1‑35 TCTTTGCCGTCATCCAGCAGCTTTTTACGGCTGGG > 1:7355330/1‑35 TCTTTGCCGTCATCCAGCAGCTTTTTACGGCTGGG > 1:14310074/1‑35 TCTTTGCCGTCATCCAGCAGCTTTTTACGGCTGGG > 1:19531394/1‑35 TCTTTGCCGTCATCCAGCAGCTTTTTACGGCTGGG > 1:12280063/1‑35 CTTTGCCGTCATCCAGCAGCTTTTTACGGCTGGGG > 1:626954/1‑35 TTGCCGTCATCCAGCAGCTTTTTACGGCTGGGGGT > 1:1204213/1‑35 TGCCGTCATCCAGCAGCTTTTTACGGCTGGGGagt > 1:11345337/1‑32 TGCCGTCATCCAGCAGCTTTTTACGGCTGGGGGTT > 1:34769/1‑35 TGCCGTCATCCAGCAGCTTTTTACGGCTGGGGGTT > 1:1305428/1‑35 GCCGTCATCCAGCAGCTTTTTACGGCTGGGGGTTT > 1:3890468/1‑35 GCCGTCATCCAGCAGCTTTTTACGGCTGGGGGTTT > 1:9608699/1‑35 CCGTCATCCAGCAGCTTTTTACGGCTGGGGGTTTT > 1:16047544/1‑35 CCGTCATCCAGCAGCTTTTTACGGCTGGGGGTTTT > 1:405141/1‑35 CGTCATCCAGCAGCTTTTTACGGCTGGGGGTTTTa > 1:755307/1‑34 GTCATCCAGCAGCTTTTTACGGCTGGGGGTTTTat > 1:4589836/1‑33 GTCATCCAGCAGCTTTTTACGGCTGGGGGTTTTTt > 1:17892549/1‑34 TCATCCAGCAGCTTTTTACGGCTGGGGGTTTTatt > 1:2752370/1‑32 CATCCAGCAGCTTTTTACGGCTGGGGGTTTTTTTT > 1:373708/1‑35 ATCCAGCAGCTTTTTACGGCTGGGGGTTTTTTTTT > 1:9998227/1‑35 ATCCAGCAGCTTTTTACGGCTGGGGGTTTTTTTTT > 1:592166/1‑35 CCAGCAGCTTTTTACGGCTGGGGGTTTTTTTTTTG > 1:3740673/1‑35 CAGCAGCTTTTTACGGCTGGGGGTTTTTTTTTTGG > 1:1544121/1‑35 TGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAA < 1:552994/35‑1 TGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAA > 1:18490513/1‑35 TGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAA > 1:17970720/1‑35 GGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAG > 1:15891834/1‑35 GGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAG < 1:16320942/35‑1 GGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAG > 1:19414826/1‑35 GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1494109‑1494073 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAG > REL606/4351442‑4351475 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |