New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 149942988 (0.860)12 (0.150) 6/38 NT 14.1% coding (1346/2127 nt) ECB_01413 conserved hypothetical protein
?REL606 1692278 = 76 (0.930)coding (806/864 nt) pdxY pyridoxine kinase

Only 100 of 175 total aligned reads displayed.

ATTGTGGACTTCCTCAACGGCGACCCGGACCAGCCGATTATTATGGGGCGTACCTACCACCATGAAAAC  >  REL606/1499395‑1499463
                                  |                                  
atggtggacTTCCTCAACGGCGACCCGGACCAGCC                                    <  1:13471007‑M1/32‑1 (MQ=255)
aTTTTGGACTTCCTCAACGGCGACCCGGACCAGCC                                    >  1:5164128‑M1/1‑35 (MQ=255)
aTTGTGGACTTCCTCAACGGCGACCCGGACCAGCC                                    >  1:7086389‑M1/1‑35 (MQ=255)
 ttGTGGACTTCCTCAACGGCGACCCGGACCACCCg                                   >  1:18637158/1‑35 (MQ=255)
  tgtgGACTTCCTCAACGGCGACCCGGACCGGCCGa                                  >  1:2861969/1‑35 (MQ=255)
   gtgGACTTCCTCAACGGCGACCCGGACCAGCCGat                                 >  1:11880618/1‑35 (MQ=255)
   gtgGACTTCCTCAACGGCGACCCGGACCAGCCGat                                 >  1:13919221/1‑35 (MQ=255)
    tgGACTTCCTCAACGGCGACCCGGACCTGCCGatt                                >  1:1653262/1‑35 (MQ=255)
    tgGACTTCCTCAACGGCGACCCGGACCAGCCGatt                                >  1:17658189/1‑35 (MQ=255)
     ggACTTCCTCAACGGCGACCCGGACCAGCCGatta                               >  1:16664529/1‑35 (MQ=255)
      gACTTCCTCAACGGCGACCCGGACCAGCCGattat                              >  1:11546883/1‑35 (MQ=255)
       ccTTCCCCAACGGCGCCCCGGCCCAGCCGattatt                             <  1:19445749/34‑1 (MQ=17)
       aCTTCCTCAACGGCGACCCGGACCAGCCGattatt                             >  1:14043069/1‑35 (MQ=255)
       aCTTCCTCAACGGCGACCCGGACCAGCCGattatt                             >  1:8043721/1‑35 (MQ=255)
        cTTCCTCAACGGCGACCCGGACCAGCCGAttatta                            >  1:17818485/1‑35 (MQ=255)
         ttCCTCAACGGCGACCCGGACCAGCCGATtattat                           >  1:11290461/1‑35 (MQ=255)
          tCCCCAACGGCGGCCCGGACCAGCCGATTATTATg                          <  1:15508860/35‑1 (MQ=17)
           ccTCAACGGCGACCCGGACCAGCCGATTATTATgg                         >  1:7735499/1‑35 (MQ=255)
            cTCAACGGCGACCCGGCCCAGCCGATTATTATggg                        <  1:20505582/35‑1 (MQ=255)
            cTCAACGGCGACCCGGACCAGACGATTATTATggg                        <  1:18255193/35‑1 (MQ=255)
              cagcGGCGACCCGGCCCAGCCGATTATTATGGGGc                      <  1:15719483/32‑1 (MQ=17)
               aaCGGCGACCCGGACCAGCCGATTATTATGGGGCg                     >  1:3043007/1‑35 (MQ=255)
               aaCGGCGACCCGGACCAGCCGATTATTATGGGGCg                     >  1:6940920/1‑35 (MQ=255)
               aaCGGCGACCCGGACCAGCCGATTATTATGGGGCg                     >  1:1104314/1‑35 (MQ=255)
               aaCGGCGACCCGGACCAGCCGATTATTATGGGGCg                     >  1:15318382/1‑35 (MQ=255)
                 cGGCGCCCGGGCCCAGCCGATTATTATGGGGCGta                   <  1:15065206/35‑1 (MQ=18)
                 cGGCGCCCCGGCCCAGCCGATTATTATGGGGCGta                   <  1:19954558/35‑1 (MQ=18)
                 cGGCGCCCCGGCCCAGCCGATTATTATGGGGCGta                   <  1:8097184/35‑1 (MQ=18)
                 cGGCGACCCGGACCAGCCGATTATTATGGGGCGta                   >  1:15927935/1‑35 (MQ=255)
                  ggCGACCCGGACCAGCCGATTATTATGGGGCGtac                  >  1:20326481/1‑35 (MQ=255)
                   gCGCCCCGGACCAGCCGATTATTATGGGGCGtacc                 <  1:81793/35‑1 (MQ=255)
                   gCGACCCGGACCAGCCGATTATTATGGGGCGtacc                 >  1:9191030/1‑35 (MQ=255)
                   gCGACCCGGACCAGCCGATTATTATGGGGCGtacc                 >  1:9526256/1‑35 (MQ=255)
                    cgccccggaCCAGCCaccacttgcagctcatattc                <  1:13427519‑M1/32‑21 (MQ=255)
                    cGACCCTGACCAGCCaccacttgcagctcatattc                <  1:8643418‑M1/35‑21 (MQ=255)
                    cGACCCGGACCAGCCaccacttgcagctcatattc                <  1:10084924‑M1/35‑21 (MQ=255)
                     gtcccGGACCAGCCGATTATTATGGGGCGtaccta               >  1:5494020/3‑35 (MQ=255)
                     gatccggaCCAGCCaccacttgcagctcatattcc               <  1:11736599‑M1/32‑22 (MQ=255)
                     gACCCGGACCAGCCGATTATTATGGGGCGtaccta               >  1:2267858/1‑35 (MQ=255)
                     gACCCGGACCAGCCGATTATTATGGGGCGtaccta               >  1:12257431/1‑35 (MQ=255)
                     gACCCGGACCAGCCGATTATTATGGGGCGtaccta               >  1:14534331/1‑35 (MQ=255)
                      ccccGGCCCAGCCGATTATTATGGGGCGtacctac              <  1:3980086/34‑1 (MQ=255)
                      aCCCGGCCCAGCCGATTATTATGGGGCGtacctac              <  1:6417799/35‑1 (MQ=255)
                      aCCCGGACCAGCCaccacttgcagctcatattcct              <  1:9003864‑M1/35‑23 (MQ=255)
                       cccGGCCCAGCCaccacttgcagctcatattcctg             <  1:18738431‑M1/35‑24 (MQ=255)
                       cccGGCCCAGCCGATTATTATGGGGCGtacctacc             <  1:3435795/35‑1 (MQ=255)
                       cccGGCCCAGCCGATTATTATGGGGCGtacctacc             <  1:13732085/35‑1 (MQ=255)
                       cccGGCCCAGCCGATTATTATGGGGCGtacctacc             <  1:16041929/35‑1 (MQ=255)
                       cccGGCCCAGCCGATTATTATGGGGCGtacctacc             <  1:18113286/35‑1 (MQ=255)
                       cccGGACCAGCCGATTATTATGGGGCGtacctacc             >  1:16918328/1‑35 (MQ=255)
                        ccGGCCCAGCCGATTATTATGGGGCGTACCTacca            <  1:10502707/35‑1 (MQ=255)
                        ccGGACCAGCCGATTATTATGGGGCGTACCTacca            >  1:2403485/1‑35 (MQ=255)
                         cGGGCCAGCCaccacttgcagctcatattcctgca           <  1:6739339‑M1/35‑26 (MQ=255)
                         cGGACCAGCCGATTATTATGGGGCGTACCTaccac           >  1:17537341/1‑35 (MQ=255)
                         cGGACCAGCCGATTATTATGGGGCGTACCTaccac           >  1:14405633/1‑35 (MQ=255)
                         cGGACCAGCCGATTATTATGGGGCGTACCTaccac           >  1:6286405/1‑35 (MQ=255)
                          gggccagcCaccacttgcagctcatattcctgcat          <  1:9574507‑M1/32‑27 (MQ=255)
                          ggACCAGCCaccacttgcagctcatattcctgcat          <  1:16324782‑M1/35‑27 (MQ=255)
                          ggACCAGCCGATTATTATGGGGCGTACCTaccacc          >  1:425991/1‑35 (MQ=255)
                          ggACCAGCCGATTATTATGGGGCGTACCTaccacc          >  1:13234717/1‑35 (MQ=255)
                          ggACCAGCCGATTATTATGGGGCGTACCTaccacc          >  1:13424909/1‑35 (MQ=255)
                          ggACCAGCCGATTATTATGGGGCGTACCTaccacc          >  1:13975351/1‑35 (MQ=255)
                          ggACCAGCCGATTATTATGGGGCGTACCTaccacc          >  1:731993/1‑35 (MQ=255)
                          gccccAGCCGATTATTATGGGGCGTACCTaccacc          <  1:14908595/32‑1 (MQ=255)
                          accccAGCCGATTATTATGGGGCGTACCTaccacc          <  1:12067939/32‑1 (MQ=255)
                           gcccagCCaccacttgcagctcatattcctgcatt         <  1:9942067‑M1/33‑28 (MQ=255)
                           gACCAGCCaccacttgcagctcatattcctgcatt         <  1:6753775‑M1/35‑28 (MQ=255)
                           gACCAGCCGATTATTATTGGGCGTACCTAccacca         >  1:1568938/1‑35 (MQ=255)
                           gACCAGCCGATTATTATGGGGCGTACCTAccacca         >  1:7514590/1‑35 (MQ=255)
                            cccaGCCacaacttgcagctcatattcctgcattg        <  1:6895095‑M1/34‑29 (MQ=255)
                            aCCAGCCaccacttgcagatcatattcctgcattg        <  1:517149‑M1/35‑29 (MQ=255)
                            aCCAGCCGATTATTATGGGGCGTACCTACCACCAt        >  1:5839582/1‑35 (MQ=255)
                             ccAGCCaccacttgcagctcatattcctgcattgc       <  1:5017184‑M1/35‑30 (MQ=255)
                             ccAGCCaccacttgcagctcatattcctgcattgc       <  1:2742952‑M1/35‑30 (MQ=255)
                             ccAGCCGATTATTATGGGGCGTACCTACCACCATg       >  1:610916/1‑35 (MQ=255)
                              cAGCCaccacttgcagctcatattcctgcattgcn      <  1:8302122‑M1/35‑31 (MQ=255)
                              cAGCCGATTATTATGGGGCGTACCTACCACCATGa      >  1:18041589/1‑35 (MQ=255)
                              cAGCCGATTATTATGGGGCGTACCTACCACCATGa      >  1:9098147/1‑35 (MQ=255)
                              cAGCCGATTATTATGGGGCGTACCTACCACCATGa      >  1:3353781/1‑35 (MQ=255)
                               aGCCaccacttgcagctcatattcctgcattgctt     >  1:12598625‑M1/1‑4 (MQ=255)
                               aGCCaccacttgcagctcatattcctgcattgctt     >  1:3320896‑M1/1‑4 (MQ=255)
                               aGCCGATTATTATGGGGCGTACCTACCACCATGaa     >  1:15616574/1‑35 (MQ=255)
                                gCCaccacttgcagctcatattcctgcattgcttt    >  1:2600830‑M1/1‑3 (MQ=255)
                                gCCaccacttgcagctcatattcctgcattgcttt    <  1:10106947‑M1/35‑33 (MQ=255)
                                gCCaccacttgcagctcatattcctgcattgcttt    >  1:10687993‑M1/1‑3 (MQ=255)
                                gCCGATTATTATGGGGCGTACCTACCACCATGaaa    >  1:8810855/1‑35 (MQ=255)
                                gCCGATTATTATGGGGCGTACCTACCACCATGaaa    >  1:12348016/1‑35 (MQ=255)
                                 ccaccacttgcagctcatattcctgcattgctttg   <  1:1119625‑M1/35‑34 (MQ=255)
                                 ccaccacttgcagctcatattcctgcattgctttg   <  1:5979930‑M1/35‑34 (MQ=255)
                                 ccaccacttgcagctcatattcctgcattgctttg   >  1:12799039‑M1/1‑2 (MQ=255)
                                 ccGATTATTATGGGGCGTACCTACCACCGTGaaaa   >  1:17300401/1‑35 (MQ=255)
                                 ccGATTATTATGGGGCGTACCTACCACCATGaaaa   >  1:18379225/1‑35 (MQ=255)
                                 ccGATTATTATGGGGCGTACCTACCACCATGaaaa   >  1:19529294/1‑35 (MQ=255)
                                 ccGATTATTATGGGGCGTACCTACCACCATGaaaa   >  1:16178681/1‑35 (MQ=255)
                                 ccGATTATAATGGGGCGTACCTACCACCATGaaaa   >  1:3874403/1‑35 (MQ=255)
                                  caccacttgcagctcatattcctgcattgctttgg  <  1:15246666‑M1/35‑35 (MQ=255)
                                  caccacttgcagctcatattcctgcattgctttgg  <  1:16900374‑M1/35‑35 (MQ=255)
                                  cGATTATTATGGGGCGTACCTACCACCATGAAAAc  >  1:14515751/1‑35 (MQ=255)
                                  cGATTATTATGGGGCGTACCTACCACCATGAAAAc  >  1:19814515/1‑35 (MQ=255)
                                  cGATTATTATGGGGCGTACCTACCACCATGAAAAc  >  1:4513110/1‑35 (MQ=255)
                                  |                                  
ATTGTGGACTTCCTCAACGGCGACCCGGACCAGCCGATTATTATGGGGCGTACCTACCACCATGAAAAC  >  REL606/1499395‑1499463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.