New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 642994 | 84 (0.820) | 9 (0.110) | 4/38 | NT | 12.4% | intergenic (‑195/+14) | lipA/ybeF | lipoyl synthase/predicted DNA‑binding transcriptional regulator |
? | REL606 | 967183 = | 61 (0.750) | coding (423/591 nt) | ycaK | hypothetical protein |
GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/642956‑642994 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgGGAAAAAAATATAAGCGATTATTTAAAAAATAT > REL606/967183‑967215 GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG > 1:17760742/1‑35 GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG > 1:19004929/1‑35 GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG < 1:14475931/35‑1 GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG > 1:1274135/1‑35 GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG < 1:12238570/35‑1 GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG < 1:7970186/35‑1 GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTG > 1:10248986/1‑35 ATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGG < 1:7924533/35‑1 ATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGG < 1:7557319/35‑1 ATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGG < 1:5996633/35‑1 ATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGG > 1:15737285/1‑35 ATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGG < 1:18818091/35‑1 ATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGG > 1:18787805/1‑35 TTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGC < 1:698035/35‑1 TTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGC < 1:536213/35‑1 TTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGC < 1:5344027/35‑1 TTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGC > 1:4972237/1‑35 TTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGC > 1:9753087/1‑35 TTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGC < 1:14263436/35‑1 TGTGCCATTTTATCGTTCTGCGCTGTGATCTGGCT < 1:6335504/35‑1 TGTGCCATTTTATCGTTCTGCGCTGTGATCTGGCT < 1:9173835/35‑1 TGTGCCATTTTATCGTTCTGCGCTGTGATCTGGCT > 1:530191/1‑35 TGTGCAATTTTATCGTTCTGCGCTGTGATCTGGCT < 1:5301481/35‑1 GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG < 1:15156957/35‑1 GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG > 1:12248690/1‑35 GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG > 1:15455843/1‑35 GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG < 1:19367317/35‑1 GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG > 1:19958181/1‑35 GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG < 1:10875118/35‑1 GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG < 1:3762887/35‑1 GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG > 1:8157158/1‑35 TGCCATTTTATCGTTCTGCGCTGTGATCTGGCTGG > 1:17960374/1‑35 GCCATTTTATCGTTCTGCGCTGTGATCTGGCTGGG > 1:17373698/1‑35 CCATTTTATCGTTCTGCGCTGTGATCTGGCTGGGA > 1:16894857/1‑35 CATTTTATCGTTCTGCGCTGTGATCTGGCTGGaac > 1:14190145/1‑32 TTTATCGTTCTGCGCTGTGATCTGGCTGGGAAAAA > 1:4799175/1‑35 TTATCGTTCTGCGCTGTGATCTGGCTGGTAAAAAA > 1:20525288/1‑35 TTATCGTTCTGCGCTGTGATCTGGCTGGGAAAAAA > 1:703448/1‑35 TTATCGTTCTGCGCTGTGATCTGGCTGGGAAAAAA > 1:17219780/1‑35 TATCGTTCTGCGCTGTGATCTGGCTGGGGAAAAAA > 1:20147231/1‑35 TATCGTTCTGCGCTGTGATCTGGCTGGGAAAAtac > 1:3881840/1‑32 ATCGTTCTGCGCTGTGATCTGGCTGGGAAAAAAct > 1:20539198/1‑33 ATCGTTCTGCGCTGTGATCTGGCTGGGAAAAAAAT > 1:3924247/1‑35 GTTCTGCGCTGTGATCTGGCTGGGAAAAAAATttt > 1:16201907/1‑32 GGCTGGGAAAAAAATATAAGCGATTATTTAAAAAA > 1:18608557/1‑35 GGCTGGGAAAAAAATATAAGCGATTATTTAAAAAA > 1:19133477/1‑35 GGCTGGGAAAAAAATATAAGCGATTATTTAAAAAA < 1:2619710/35‑1 GCTGGGAAAAAAATATAAGCGATTATTTAAAAAAT < 1:12946803/35‑1 GCTGGGAAAAAAATATAAGCGATTATTTAAAAAAT > 1:10491770/1‑35 GCTGGGAAAAAAATATAAGCGATTATTTAAAAAAT > 1:5182388/1‑35 GCTGGGAAAAAAATATAAGCGATTATTTAAAAAAT < 1:5170351/35‑1 CTGGGAAAAAAATATAAGCGATTATTTAAAAAATA < 1:14802851/35‑1 CTGGGAAAAAAATATAAGCGATTATTTAAAAAATA < 1:1868350/35‑1 CTGGGAAAAAAATATAAGCGATTATTTAAAAAATA < 1:17952124/35‑1 TGGGAAAAAAATATAAGCGATTATTTAAAAAATAT < 1:46747/35‑1 TGGGAAAAAAATATAAGCGATTATTTAAAAAATAT > 1:3036409/1‑35 TGGGAAAAAAATATAAGCGATTATTTAAAAAATAT < 1:9418802/35‑1 GATTGTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/642956‑642994 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgGGAAAAAAATATAAGCGATTATTTAAAAAATAT > REL606/967183‑967215 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |