New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 234562869 (0.670)11 (0.120) 6/44 NT 10.6% coding (16/501 nt) nuoE NADH dehydrogenase subunit E
?REL606 3882315 = 123 (1.310)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

TGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2345593‑2345628
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGGGGTTTTGTGGATCCACCAGCGAGAATGTACG  >  REL606/3882315‑3882348
                                                                      
TGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTT                                     <  1:15234546/35‑1
TGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTT                                     <  1:14996016/35‑1
 GCCGCACTCAGCTCAAAAGCCTCTGTTTGTGGTTG                                    >  1:19192450/1‑35
 GCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTG                                    <  1:4950039/35‑1
 GCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTG                                    <  1:4987627/35‑1
 GCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGGTG                                    >  1:13834431/1‑35
  CCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGG                                   >  1:1489066/1‑35
  CCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGG                                   >  1:13733837/1‑35
  CCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGG                                   >  1:9974065/1‑35
   CGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGGG                                  >  1:13240416/1‑35
   CGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGGG                                  >  1:8377829/1‑35
   CGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGGG                                  >  1:3870900/1‑35
   CGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGGG                                  >  1:19684919/1‑35
   CGCACTCAGCTCAAAAGCCTCGGGTTGTGGTTGGG                                  >  1:8201108/1‑35
    GCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGGGG                                 >  1:594025/1‑35
    GCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGGGG                                 >  1:9514605/1‑35
    GCACTCAGCTCAAAAGCCTCGGTTTGTGGTTGGGG                                 >  1:16249861/1‑35
     CACTCAGCTCAAAAGCCTCGGTTTGTGGTTGGGGG                                >  1:20263003/1‑35
     CACTCAGCTCAAAAGCCTCGGTTTGTGGTTGGGGG                                >  1:1031497/1‑35
      ACTCAGCTCAAAAGCCTCGGTTTGTGGTTGGGGGt                               >  1:9540653/1‑34
      ACTCAGCTCAAAAGCCTCGGTTTGTGGTTGGGGGt                               >  1:17746025/1‑34
      ACTCAGCTCAAAAGCCTCGGTTTGTGGTTGGGGGt                               >  1:9190161/1‑34
      ACTCAGCTCAAAAGCCTCGGTTTGTGGTTGGGGGG                               >  1:5418876/1‑35
       CTCAGCTCAAAAGCCTCGGTTTGTGGTTGGGGGGg                              >  1:8137086/1‑34
       CTCAGCTCAAAAGCCTCGGTTTGTGGTTGGGGGGT                              >  1:2571547/1‑35
         CAGCTCAAAAGCCTCGGTTTGTGGTTGGGGGGTTT                            >  1:17624010/1‑35
           GCTCAAAAGCCTCGGTTTGTGGTTGGGGGGTTTTc                          >  1:2800612/1‑34
           GCTCAAAAGCCTCGGTTTGTGGTTGGGGGGTTTTG                          >  1:4700830/1‑35
           GCTCAAAAGCCTCGGTTTGTGGTTGGGGGGGTTTc                          >  1:7944613/1‑34
            CTCAAAAGCCTCGGTTTGTGGTTGGGGGGTTTctt                         >  1:489376/1‑32
            CTCAAAAGCCTCGGTTTGTGGTTGGGGGGTTTCGT                         >  1:14993549/1‑35
             TCAAAAGCCTCGGTTTGTGGTTGGGGGTTTTTGTt                        >  1:19144816/1‑34
             TCAAAAGCCTCGGTTTGTGGTTGGGGGGTTTTGTG                        >  1:1518778/1‑35
              CAAAAGCCTCGGTTTGTGGTTGGGGGGTTTTTTGt                       >  1:6605611/1‑34
              CAAAAGCCTCGGTTTGTGGTTGGGGGGTTTTCTGG                       >  1:14892967/1‑35
                                  TGGGGGGTTTTGTGGATCCACCAGCGAGAATGTA  >  1:18132621/1‑34
                                  TGGGGGGTTTTGTGGATCCACCAGCGAGAATGTAC   >  1:14683651/1‑35
                                  TGGGGGGTTTTGTGGATCCACCAGCGAGAATGTAC   >  1:15578103/1‑35
                                  TGGGGGGTTTTGTGGATCCACCAGCGAGAATGTAC   <  1:9366146/35‑1
                                  TGGGGGGTTTTGTGGATCCACCAGCGAGAATGTAC   <  1:9420845/35‑1
                                  TGGGGGGTTTTGGGGATCCACCAGCGAGAATGTAC   <  1:4613161/35‑1
                                   GGGGGGTTTTGTGGATCCACCAGCGAGAATGTACG  <  1:546117/35‑1
                                   GGGGGGTTTTGTGGATCCACCAGCGAGAATGTACG  >  1:7589795/1‑35
                                   GGGGGGTTTTGTGGATCCACCAGCGAGAATGTACG  <  1:14291562/35‑1
                                   GGGGGGTTTTGTGGATCCACCAGCGAGAATGTACG  >  1:13213844/1‑35
                                   GGGGGGTTTTGTGGATCCACCAGCGAGAATGTACG  <  1:1069832/35‑1
                                   GGGGGGTTTTGTGGATCCACCAGCGAGAATGTACG  <  1:3194082/35‑1
                                                                      
TGCCGCACTCAGCTCAAAAGCCTCGGTTTGTGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2345593‑2345628
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGGGGTTTTGTGGATCCACCAGCGAGAATGTACG  >  REL606/3882315‑3882348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.