New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 580467 = | 60 (0.580) | 4 (0.050) | 3/36 | NT | 9.1% | coding (851/3144 nt) | cusA | copper/silver efflux system, membrane component |
? | REL606 | 2397842 = | 35 (0.450) | coding (824/2646 nt) | yfcTU | predicted outer membrane export usher protein |
TTTGCCGGATCGCAGGATCACCACCCCGCCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/580501‑580467 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccaACATAGTTAAAACCGTCGAAAATATCGGAATTGA > REL606/2397842‑2397875 TTTGCCGGATCGCAGGATCACCACCCCGCCCGCCA > 1:17308442/1‑35 CACCCCGCCCGCCAACATAGTTAAAACCGTCGAAA < 1:4438622/35‑1 ACCCCGCCCGCCAACATAGTTAAAACCGTCGAAAA < 1:3422707/35‑1 ACCCCCCCCGCCAACATAGTTAAAACCGTCGAAAA < 1:18321347/35‑1 CCCCGCCCGCCAACATAGTTAAAACCGTCGAAAAT < 1:8046866/35‑1 gCGCCCGCCAACATAGTTAAAACCGTCGAAAATAT < 1:5403952/34‑1 tCCCGCCAACATAGTTAAAACCGTCGAAAATATCG < 1:9571015/34‑1 tCCCGCCAACATAGTTAAAACCGTCGAAAATATCG < 1:13138839/34‑1 cCCCGCCAACATAGTTAAAACCGTCGAAAATATCG < 1:8565160/34‑1 GCCCGCCAACATAGTTAAAACCGTCGAAAATATCG < 1:4594204/35‑1 GCCCGCCAACATAGTTAAAACCGTCGAAAATATCG < 1:18022228/35‑1 CCCGCCAACATAGTTAAAACCGTCGAAAATATCGG < 1:5060415/35‑1 CCCGCCAACATAGTTAAAACCGTCGAAAATATCGG < 1:19379034/35‑1 CCCGCCAACATAGTTAAAACCGTCGAAAATATCGG < 1:18799099/35‑1 caGCCAACATAGTTAAAACCGTCGAAAATATCGGA < 1:19218733/33‑1 CCGCCAACATAGTTAAAACCGTCGAAAATATCGGA < 1:16677934/35‑1 CCGCCAACATAGTTAAAACCGTCGAAAATATCGGA < 1:8319998/35‑1 CCGCCAACATAGTTAAAACCGTCGAAAATATCGGA > 1:14031450/1‑35 ccCCAACATAGTTAAAACCGTCGAAAATATCGGAA < 1:1763156/33‑1 ccCCAACATAGTTAAAACCGTCGAAAATATCGGAA < 1:16420977/33‑1 CGCCAACATAGTTAAACCCGTCGAAAATATCGGAA < 1:7302064/35‑1 CGCCAACATAGTTAAAACCGTCGAAAATATCGGAA > 1:16882893/1‑35 CGCCAACATAGTTAAAACCGTCGAAAATATCGGAA > 1:1807149/1‑35 CGCCAACATAGTTAAAACCGTCGAAAATATCGGAA < 1:16510675/35‑1 CGCCAACATAGTTAAAACCGTCGAAAATATCGGAA < 1:19232256/35‑1 CGCCAACATAGTTAAAACCGTCGAAAATATCGGAA > 1:13698770/1‑35 CGCAAACATAGTTAAAACCGTCGAAAATATCGGAA < 1:15435461/35‑1 GCCAACATAGTTAAAACCGTCGAAAATATCGGAAT < 1:2083010/35‑1 GCCAACATAGTTAAAACCGTCGAAAATATCGGAAT < 1:11588542/35‑1 CCAACATAGTTAAAACCGTCGAAAATATCGGAATT < 1:5159219/35‑1 CCAACATAGTTAAAACCGTCGAAAATATCGGAATT < 1:5341684/35‑1 CCAACATAGTTAAAACCGTCGAAAATATCGGAATT > 1:10044970/1‑35 CCAACATAGTTAAAACCGTCGAAAATATCGGAATT < 1:13104962/35‑1 CCAACATAGTTAAAACCGTCGAAAATATCGGAATT > 1:20461718/1‑35 CCAACATAGTTAAAACCGTCGAAAATATAGGAATT < 1:19949128/35‑1 CAACATAGTTAAAACCGTCGAAAATATCGGAATTG < 1:10952186/35‑1 CAACATAGTTAAAACCGTCGAAAATATCGGAATTG > 1:8158755/1‑35 AACATAGTTAAAACCGTCGAAAATATCGGAATTGA < 1:4434164/35‑1 AACATAGTTAAAACCGTCGAAAATATCGGAATTGA < 1:3908812/35‑1 AACATAGTTAAAACCGTCGAAAATATCGGAATTGA > 1:14827794/1‑35 AACATAGTTAAAACCGTCGAAAATATCGGAATTGA > 1:10649585/1‑35 TTTGCCGGATCGCAGGATCACCACCCCGCCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/580501‑580467 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccaACATAGTTAAAACCGTCGAAAATATCGGAATTGA > REL606/2397842‑2397875 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |