Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,648,342 IS1 (–) +9 bp 28.2% intergenic (+195/‑221) ynfM → / → asr predicted transporter/acid shock protein precursor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1323488NA (NA)22 (0.210) 18/48 NT 26.6% noncoding (768/768 nt) IS1 repeat region
?REL606 = 1648350 38 (0.590)intergenic (+203/‑221) ynfM/asr predicted transporter/acid shock protein precursor
* ? REL606 1648342 =36 (0.600)7 (0.090) 6/36 NT 13.1% intergenic (+195/‑229) ynfM/asr predicted transporter/acid shock protein precursor
?REL606 = 3024712 NA (NA)noncoding (1/768 nt) IS1 repeat region

CATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1323455‑1323488
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACAAAGCGGTAGAATAACTGCGCATCAGTAATA  <  REL606/1648350‑1648317
                                                                    
CATAAAACACTATCAATAAGTTTGAGTCATTACCT                                   >  1:3850008/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:15920930/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:16078086/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:16716876/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:17132695/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:17408628/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:17800940/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:18021606/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:18358241/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:18530800/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:8424231/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:18986280/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:19809891/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:19853110/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:19949941/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:19981360/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:2038462/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:207264/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:792542/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:285385/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:3439584/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:3791423/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:4112570/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:7703726/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:493158/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:7442237/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:7168882/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:6351766/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:14078689/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:9111710/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:1557915/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:9907913/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:10648656/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:11035387/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:1539727/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:15313148/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:15261908/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:12735630/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   >  1:9434045/1‑35
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:15001548/35‑1
CATAAAACACTATCAATAAGTTGGAGTCATTACCT                                   <  1:14612108/35‑1
CATAAAACACTATCAATAAGTTGGAGCCATTACCT                                   >  1:537552/1‑35
CATAAAACACTATAAATAAGTTGGAGTCATTACCT                                   <  1:15022287/35‑1
 ATAAAACAGTATCAATAAGTTGGAGTCATTACCTA                                  >  1:6462329/1‑35
 ATAAAACACTATCAATAAGTTTGAGTCATTACCTA                                  >  1:15823261/1‑35
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  >  1:779712/1‑35
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  <  1:9468442/35‑1
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  >  1:11262055/1‑35
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  <  1:111214/35‑1
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  >  1:7681795/1‑35
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  <  1:3112585/35‑1
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  <  1:13881275/35‑1
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  >  1:15837260/1‑35
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  <  1:16928929/35‑1
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  >  1:8804736/1‑35
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  <  1:8505540/35‑1
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  <  1:1802841/35‑1
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  <  1:19612417/35‑1
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  >  1:14544647/1‑35
 ATAAAACACTATCAATAAGTTGGAGTCATTACCTA                                  <  1:20383768/35‑1
  TAAAACACTATCAATAAGTTTGAGTCATTACCTAC                                 >  1:3015911/1‑35
  TAAAACACTATCAATAAGTTGGAGTCATTACCTAC                                 <  1:5801848/35‑1
  TAAAACACTATCAATAAGTTGGAGTCATTACCTAC                                 >  1:19263525/1‑35
  TAAAACACTATCAATAAGTTGGAGTCATTACCTAC                                 <  1:19466540/35‑1
  TAAAACACTATCAATAAGTTGGAGTCATTACCTAC                                 <  1:3523888/35‑1
  TAAAACACTATCAATAAGTTGGAGTCATTACCTAC                                 <  1:324399/35‑1
   AAAACACTATCAATAAGTTGGAGTCATTACCTACA                                <  1:14204378/35‑1
   AAAACACTATCAATAAGTTGGAGTCATTACCTACA                                >  1:15507298/1‑35
   AAAACACTATCAATAAGTTGGAGTCATTACCTACA                                >  1:9742330/1‑35
   AAAACACTATCAATAAGTTGGAGTCATTACCTACA                                <  1:19839231/35‑1
   AAAACACTATCAATAAGTTGGAGTCATTACCTACA                                >  1:13409466/1‑35
    AAACACTATCAATAAGTTGGAGTCATTACCTACAA                               <  1:4017414/35‑1
    AAACACTATCAATAAGTTGGAGTCATTACCTACAA                               >  1:15227924/1‑35
    AAACACTATCAATAAGTTGGAGTCATTACCTACAA                               <  1:7850476/35‑1
    AAACACTATCAATAAGTTGGAGTCATTACCTACAA                               <  1:12797889/35‑1
    AAACACTATCAATAAGTTGGAGTCATTACCTACAA                               >  1:6278106/1‑35
      ACACTATCAATAAGTTGGAGTCATTACCTACAAAG                             >  1:894323/1‑35
      ACACTATCAATAAGTTGGAGTCATTACCTACAAAG                             <  1:4271427/35‑1
       CACTATCAATAAGTTGGAGTCATTACCTACAAAGC                            <  1:6341290/35‑1
          TATCAATAAGTTGGAGTCATTACCTACAAAGCTGT                         >  1:10105986/1‑35
           ATCAATAAGTTGGAGTCATTACCTACAAAGCGGTA                        <  1:2867786/35‑1
           ATCAATAAGTTGGAGTCATTACCTACAAAGCGGTA                        <  1:12652966/35‑1
            TCAATAAGTTGGAGTCATTACCTACAAAGCGGTAG                       <  1:4945087/35‑1
              AATAAGTTGGAGTCATTACCTACAAAGCGGTAGAA                     <  1:5415439/35‑1
               ATAAGTTGGAGTCATTACCTACAAAGCGGTAGAAT                    <  1:4433953/35‑1
               ATAAGTTGGAGTCATTACCCACAAAGCGGTAGAAT                    <  1:13404269/35‑1
                 AAGTTGGAGTCATTACCTACAAAGCGGTAGAATAA                  >  1:4869908/1‑35
                 AAGTTGGAGTCATTACCTACAAAGCGGTAGAATAA                  >  1:4531990/1‑35
                   GTTGGAGTCATTACCTACAAAGCGGTAGAATAACT                <  1:1121310/35‑1
                    TTGGAGTCATTACCTACAAAGCGGTAGAATAACTG               <  1:694466/35‑1
                     TGGAGTCATTACCTACAAAGCGGTAGAATAACTGC              <  1:9909824/35‑1
                      GGAGTCATTACCTACAAAGCGGTAGAATAACTGCG             >  1:6917878/1‑35
                        AGTCATTACCTACAAAGCGGTAGAATAACTGCGCA           <  1:8743250/35‑1
                         GTCATTACCTACAAAGCGGTAGAATAACTGCGCAT          >  1:17300234/1‑35
                         GTCATTACCTACAAAGCGGTAGAATAACTGCGCAT          <  1:18626996/35‑1
                          TCATTACCTACAAAGCGGTAGAATAACTGCGCATC         <  1:17250351/35‑1
                          TCATTACCTACAAAGCGGTAGAATAACTGCGCATC         <  1:10175318/35‑1
                            ATTACCTACAAAGCGGTAGAATAACTGCGCATCAG       >  1:2176260/1‑35
                                 CTACAAAGCGGTAGAATAACTGCGCATCAGTAATA  <  1:14501247/35‑1
                                                                    
CATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1323455‑1323488
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACAAAGCGGTAGAATAACTGCGCATCAGTAATA  <  REL606/1648350‑1648317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.