New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2169426 = | 52 (0.510) | 13 (0.160) | 6/38 | NT | 13.2% | coding (329/1158 nt) | yehY | predicted transporter subunit: membrane component of ABC superfamily |
? | REL606 | = 2730083 | 130 (1.600) | coding (2203/2253 nt) | hypF | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases |
GCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2169464‑2169426 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGTG < REL606/2730083‑2730050 GCAAAATGGCAGTGCGCTGGCGCGTCCCAGCCTCG < 1:10543329/35‑1 GCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCG < 1:19329885/35‑1 GCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCG < 1:8845332/35‑1 CAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGG < 1:18211551/35‑1 CAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGG < 1:13349291/35‑1 AAAATGGCAGTGCGCTGGCGCGTCCCAGCCTCGGC < 1:16232323/35‑1 AATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAG < 1:12966831/35‑1 CAGTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGg > 1:8567580/1‑34 CAGTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGT > 1:370236/1‑35 AGTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGTT > 1:17745148/1‑35 GTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGgtt > 1:7681731/1‑32 GTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGTTt > 1:3115019/1‑34 GTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGTTt > 1:13530348/1‑34 GTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGTTt > 1:13515520/1‑34 GTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGTTt > 1:13510748/1‑34 TGCGCTGGCGCGTACCAGCCTCGGCAGGGGGTTtt > 1:12289531/1‑33 GCGCTGGCGCGTACCAGCCTCGGCAGGGGGTTTTT > 1:10311820/1‑35 CGCTGGCGCGTACCAGCCTCGGCAGGGGGTTTTTG > 1:4718825/1‑35 CGCTGGCGCGTACCAGCCTCGGCAGGGGGTTTTTG > 1:19252145/1‑35 GCTGGCGCGTACCAGCCTCGGCAGGGGGTTTTTGC > 1:9621149/1‑35 CTGGCGCGTACCAGCCTCGGCAGGGGGTTTTTGCT > 1:774022/1‑35 TGGCGCGTACCAGCCTCGGCAGGGGGTTCTTGCTG > 1:15013945/1‑35 GGCGCGTACCAGCCTCGGCAGGGGGTTTTTGCTGg > 1:18836726/1‑34 GGCAGGGTGTTATTGCTGCGGCGCGTTGGTTAGCG > 1:12800169/1‑35 GGCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCG < 1:2955831/35‑1 GGCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCG < 1:20274533/35‑1 GGCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCG < 1:10681289/35‑1 GGCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCG < 1:7759532/35‑1 GGCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCG < 1:1603213/35‑1 GGCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCG < 1:15615628/35‑1 gctGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG < 1:20357440/32‑1 GCAGGGGGTTATTGCTGCGGCGCGTTTGTTAGCGG < 1:6818973/35‑1 GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGN < 1:3614775/35‑1 GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG < 1:17638924/35‑1 GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG > 1:11547188/1‑35 GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG < 1:5018383/35‑1 GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG < 1:6185667/35‑1 GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG < 1:4242470/35‑1 GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG < 1:16129514/35‑1 GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG < 1:7294752/35‑1 GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG > 1:12753027/1‑35 GCAGGGGGTTATTGCTGCGGCGCGTTGGGTAGCGt > 1:395554/1‑34 GCAGGGGGTTATTGCTGCGGCGCGTTGGGTAGCGG > 1:1958201/1‑35 CAGGGGGTTATTGCTTCGGCGCGTTGGTTAGCGGG > 1:19162950/1‑35 CAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGG > 1:4658110/1‑35 CAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGG < 1:4762178/35‑1 CAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGG < 1:8509754/35‑1 CAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGG > 1:13875931/1‑35 CAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGG > 1:12286047/1‑35 AGGGGTTTATTGCTGCGGCGCGTTGGTTAGCGGGT > 1:1637456/1‑35 AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT > 1:288838/1‑35 AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT < 1:20580416/35‑1 AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT > 1:19484764/1‑35 AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT > 1:1751562/1‑35 AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT > 1:5969588/1‑35 AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT < 1:1486409/35‑1 AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT < 1:13425362/35‑1 AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT < 1:9640583/35‑1 AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT < 1:7994208/35‑1 GGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGgg > 1:970966/1‑33 GGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGgg > 1:10030078/1‑33 GGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGTG < 1:436702/35‑1 GGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGTG < 1:18203661/35‑1 GGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGTG < 1:1217976/35‑1 GGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGTG > 1:1178477/1‑35 GCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2169464‑2169426 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGTG < REL606/2730083‑2730050 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |