New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 219734985 (0.830)22 (0.240) 7/42 NT 18.7% coding (659/1992 nt) cirA ferric iron‑catecholate outer membrane transporter
?REL606 3882314 = 133 (1.290)coding (104/816 nt) atpB F0F1 ATP synthase subunit A

CCTTCAATACGCGGCGTTTCTCCGGTATCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2197316‑2197349
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGGTTTTGTGG  >  REL606/3882314‑3882327
                                  |||              
CCTTCAATACGCGGCGTTTCTCCGGTATCGGTGGG                  >  1:10766906/1‑35
CCTTCAATACGCGGCGTTTCTCCGGTATCGGTGGG                  >  1:3011730/1‑35
 CTTCAATACGCGGCGTTTCTCCGGTATCGGTGGGG                 >  1:11245169/1‑35
  TTCAATACGCGGCGTTTCTCCGGTATCGGTGGGGG                >  1:16395578/1‑35
   TCAATACGCGGCGTTTCTCCGGTATCGGTGGGGGG               >  1:118386/1‑35
   TCAATACGCGGCGTTTCTCCGGTATCGGTGGGGGG               >  1:13507512/1‑35
   TCAATACGCGGCGTTTCTCCGGTATCGGTGGGGGG               >  1:2531198/1‑35
     AATACGCTGCGTTTCTCCGGTATCGGTGGGGGGGG             >  1:17530743/1‑35
     AATACGCGGCGTTTCTCCGGTATCGGTGGGGGGGG             >  1:9582294/1‑35
      ATACGCGGCGTTTCTCCGGTATCGGTGGGGGGGGG            >  1:15071939/1‑35
       TACGCGGCGTTTCTCCGGTATCGGTGGGGGGTGGG           >  1:6029570/1‑35
       TACGCGGCGTTTCTCCGGTATCGGTGGGGGGGGGG           >  1:5183822/1‑35
       TACGCGGCGTTTCTCCGGTATCGGTGGGGGGGGGG           >  1:5863021/1‑35
       TACGCGGCGTTTCTCCGGTATCGGTGGGGGGGGGG           >  1:8014799/1‑35
       TACGCGGCGTTTCTCCGGTATCGGTGGGGGGGGGG           >  1:18592978/1‑35
        ACGCGGCGTTTCTCCGGTATCGGTGGGGGGTGGGG          >  1:4975451/1‑35
        ACGCGGCGTTTCTCCGGTATCGGTGGGGGGGGGGG          >  1:5705668/1‑35
        ACGCGGCGTTTCTCCGGTATCGGTGGGCGGGGGGG          >  1:15505449/1‑35
         CGCGGCGTTTCTCCGGTATCGGTGGGGGGGGGGtg         >  1:1680822/1‑33
         CGCGGCGTTTCTCCGGTATCGGTGGGGGGGGGGGg         >  1:19308993/1‑34
         CGCGGCGTTTCTCCGGTATCGGTGGGGGGGGGGGg         >  1:15295098/1‑34
         CGCGGCGTTTCTCCGGTATCGGTGGGGGGGGGGGT         >  1:15205155/1‑35
         CGCGGCGTTTCTCCGGTATCGGTGGGGGGGGGGGT         >  1:16468133/1‑35
          GCGGCGTTTCTCCGGTATCGGTGGGGGGGTGGGTT        >  1:1966828/1‑35
          GCGGCGTTTCTCCGGTATCGGTGGGGGGGGGGGTT        >  1:1832896/1‑35
          GCGGCGTTTCTCCGGTATCGGTGGGGGGGGGGGTT        >  1:18890271/1‑35
          GCGGCGTTTCTCCGGTATCGGTGGGGGGGGGGGTT        >  1:5344783/1‑35
           CGGCGTTTCTCCGGTATCGGTGGGGGGGGGGGTTT       >  1:6302387/1‑35
           CGGCGTTTCTCCGGTATCGGTGGGGGGGGGGGTTT       >  1:14341634/1‑35
           CGGCGTTTCTCCGGTATCGGTGGGGGGGGGGGTTT       >  1:16810126/1‑35
           CGGCGTTTCTCCGGTATCGGTGGGGGGGGGGGGTT       >  1:14752042/1‑35
            GGCGTTTCTCCGGTATCGGTGGGGGGGGGGGTTTT      >  1:18246582/1‑35
            GGCGTTTCTCCGGTATCGGTGGGGGGGGGGGGTTT      >  1:5101918/1‑35
             GCGTTTCTCCGGTATCGGTGGGGGGGGGGGTTTTc     >  1:6402107/1‑34
              CGTTTCTCCGGTATCGGTGGGGGGGGGGGTTTTtt    >  1:8144090/1‑33
               GTTTCTCCGGTATCGGTGGGGGGGGGGGTTTTGgg   >  1:19158355/1‑33
               GTTTCTCCGGTATCGGTGGGGGGGGGGGTTTTGTG   >  1:3213615/1‑35
                TTTCTCCGGTATCGGTGGGGGGGGGGGTTTTGTGG  >  1:3069534/1‑35
                                  |||              
CCTTCAATACGCGGCGTTTCTCCGGTATCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2197316‑2197349
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGGTTTTGTGG  >  REL606/3882314‑3882327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.