New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 965820 =63 (0.610)8 (0.100) 3/36 NT 12.3% coding (842/909 nt) ycaN predicted DNA‑binding transcriptional regulator
?REL606 4368357 = 67 (0.870)coding (159/969 nt) psd phosphatidylserine decarboxylase

Only 100 of 180 total aligned reads displayed.

CGTTAAAGGTGCGGTAGCTGGCGGTGTCCGGCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTATTTAA  >  REL606/4368323‑4368391
                                  |                                  
cGTTAGAGGTGCGGTAGCTGGCGGTGTCCGGCttt                                    <  1:12267551/35‑1 (MQ=255)
cGTTAAAGGTGCGGTAGCTGGCGGTGTCCGGCttt                                    <  1:4935509/35‑1 (MQ=255)
cGTTAAAGGTGCGGTAGCTGGCGGTGTCCGGCttt                                    <  1:12337872/35‑1 (MQ=255)
 ttatccaaaccgccagtatatgtcctgcggctttc                                   >  1:8414567‑M2/34‑34 (MQ=255)
 gTTAAAGGTGCGGTAGCTGGCGGTGTCCGGCtttt                                   <  1:3916892/35‑1 (MQ=255)
 gTTAAAGGTGCGGTAGCTGGCGGTGTCCGGCtttt                                   <  1:13418738/35‑1 (MQ=255)
  ttAAAGGTGCGGTAGCTGGCGGTGTCCGGCTTTTg                                  <  1:13773459/35‑1 (MQ=255)
  ttAAAGGTGCGGTAGCTGGCGGTGTCCGGCTTTTg                                  <  1:6957021/35‑1 (MQ=255)
   tAAAGGTGCGGTAGCTGGCGGTGTCCGGCTTTTgc                                 <  1:15323778/35‑1 (MQ=255)
   atccaaaccgccagtatatgtcctgcggcttTTgc                                 >  1:19381389‑M2/32‑35 (MQ=255)
    aaaGGTGCGGTAGCTGGCGGTGTCCGGCTTTTgcg                                <  1:10328182/35‑1 (MQ=255)
    aaaGGTGCGGTAGCTGGCGGTGTCCGGCTTTTgcg                                <  1:7312459/35‑1 (MQ=255)
     ccaaaccgccagtatatgtcctgcggcttTTgcgc                               >  1:9518936‑M2/30‑35 (MQ=255)
     ccaaaccgccagtatatgtcctgcggcttTCgcgc                               >  1:20255089‑M2/30‑35 (MQ=255)
     aaGGTGCGGTAGCTGGCGGTGTCCGGCTTTTgcgc                               <  1:20105141/35‑1 (MQ=255)
     aaGGTGCGGTAGCTGGCGGTGTCCGGCTTTTgcgc                               <  1:4697827/35‑1 (MQ=255)
     aaGGTGCGGTAGCTGGCGGTGTCCGGCTTTTgcgc                               <  1:10786022/35‑1 (MQ=255)
      aGGTGCGGTAGCTGGCGGTGTCCGGCTTTTGCGcc                              <  1:19043027/35‑1 (MQ=255)
       naaccgccagtatatgtcctgcggcttTCGCGCct                             >  1:13800169‑M2/28‑35 (MQ=255)
       ggTGCGGTAGCTGGCGGTGTCCGGCTTTTGCGCct                             <  1:3197121/35‑1 (MQ=255)
       ggTGCGGTAGCTGGCGGTGTCCGGCTTTTGCGCct                             <  1:3256913/35‑1 (MQ=255)
       ggTGCGGTAGCTGGCGGTGTCCGGCTTTTGCGCct                             <  1:11745522/35‑1 (MQ=255)
       aaaccgccagtatatgtcctgcggcttTTGCGCct                             >  1:6796313‑M2/28‑35 (MQ=255)
         tGCGGTAGCTGGCGGTGTCCGGCTTTTGCGCctct                           <  1:8237135/35‑1 (MQ=255)
         tGCGGTAGCTGGCGGTGTCCGGCTTTTGCGCctct                           <  1:16263647/35‑1 (MQ=255)
          gCGGTAGCTGGCGGTGTCCGGCTTTTGCGCCTCtt                          <  1:4425823/35‑1 (MQ=255)
          gCGGTAGCTGGCGGTGTCCGGCTTTTGCGCCTCtt                          <  1:3427311/35‑1 (MQ=255)
           cgccagtatatgtcctgcggcttTTGCGCCTTttt                         >  1:17356075‑M2/24‑35 (MQ=255)
           cGGTAGCTGGCGGTGTCCGGCTTTTGCGCCTCttt                         <  1:3138377/35‑1 (MQ=255)
           cGGTAGCTGGCGGTGTCCGGCTTTTGCGCCTCttt                         <  1:943323/35‑1 (MQ=255)
           cGGTAGCTGGCGGTGTCCGGCTTTTGCGCCTCttt                         <  1:3627702/35‑1 (MQ=255)
           cGGTAGCTGGCGGTGTCCGGCTTTTGCGCATCttt                         <  1:11466758/35‑1 (MQ=255)
            ggTAGCTGGCGGTGTCCGGCTTTTGCGCCTCTTTc                        <  1:15606985/35‑1 (MQ=255)
            ggTAGCTGGCGGTGTCCGGCTTTTGCGCCTCTTTc                        <  1:20428400/35‑1 (MQ=255)
            ggTAGCTGGCGGTGTCCGGCTTTTGCGCCTCTTTc                        <  1:5581268/35‑1 (MQ=255)
            ggTAGCTGGCGGTGTCCGGCTTTTGCGCCTCTTTc                        <  1:17859081/35‑1 (MQ=255)
              tAGCTGGCGGTGTCCGGCTTTTGCGCCTCTTTCAt                      <  1:13063297/35‑1 (MQ=255)
              tAGCTGGCGGTGTCCGGCTTTTGCGCCTCTTTCAt                      <  1:8003616/35‑1 (MQ=255)
                gCTGGCGGTGTCCGGCTTTTGCGCCTCTTTCATGt                    <  1:14747427/35‑1 (MQ=255)
                gCTGGCGGTGTCCGGCTTTTGCGCCTCTTTCATGt                    <  1:17255821/35‑1 (MQ=255)
                 cTGGCGGTGTCCGGCTTTTGCGCCTCTTTCATGTc                   <  1:14014268/35‑1 (MQ=255)
                 cTGGCGGTGTCCGGCTTTTGCGCCTCTTTCATGTc                   <  1:12986488/35‑1 (MQ=255)
                 cTGGCGGTGTCCGGCTTTTGCGCCTCTTTCATGTc                   <  1:20584346/35‑1 (MQ=255)
                  tGGCGGTGTCCGGCTTTTGCGCCTCTTTCATGTCg                  <  1:14871316/35‑1 (MQ=255)
                   ggCGGTGTCCGGCTTTTGCGCCTCTTTCATGTCGa                 <  1:6223118/35‑1 (MQ=255)
                    gCGGTGTCCGGCTTTTGCGCCTCTTTCATGTCGAc                <  1:4687357/35‑1 (MQ=255)
                    gCGGTGTCCGGCTTTTGCGCCTCTTTCATGTCGAc                <  1:19780724/35‑1 (MQ=255)
                    gCGGTGTCCGGCTTTTGCGCCTCTTTCATGTCGAc                <  1:6893257/35‑1 (MQ=255)
                    gCGGTGTCCGGCTTTTGCGCCTCTTTCATGTCGAc                >  1:13129929/1‑35 (MQ=255)
                    gCGGTGTCCGGCTTTTGCGCCTCTTTCATGTCGAc                >  1:17805284/1‑35 (MQ=255)
                    gCGGTGTCCGGCTTTTGCGCCTCTTTCATGTCGAc                >  1:14578309/1‑35 (MQ=255)
                    gCGGTGTCCGGCTTTTGCGCCTCTTTCATGTCGAc                <  1:10201550/35‑1 (MQ=255)
                    gCGGTGTCCGGCTTTTGCGCCTCTTTCATGTCGAc                <  1:10199841/35‑1 (MQ=255)
                     cGGTGTCCGGCTTTTGCGCCTCTTTCATGTCGAcc               >  1:11624130/1‑35 (MQ=255)
                     cGGTGTCCGGCTTTTGCGCCTCTTTCATGTCGAcc               <  1:13656071/35‑1 (MQ=255)
                      ggTGTCCGGCTTTTGCGCCTCTTTCATGTCGACCt              <  1:7763077/35‑1 (MQ=255)
                      ggTGTCCGGCTTTTGCGCCTCTTTCATGTCGACCt              >  1:17121649/1‑35 (MQ=255)
                      ggTGTCCGGCTTTTGCGCCTCTTTCATGTCGACCt              >  1:14627395/1‑35 (MQ=255)
                       gtgtCCGGCTTTTGCGCCTCTTTCATGTCGCCCtt             <  1:18448361/35‑1 (MQ=255)
                       gtgtCCGGCTTTTGCGCCTCTTTCATGTCGACCtt             <  1:10275113/35‑1 (MQ=255)
                       gtgtCCGGCTTTTGCGCCTCTTTCATGTCGACCtt             <  1:17078475/35‑1 (MQ=255)
                       gtgtCCGGCTTTTGCGCCTCTTTCATGTCGACCtt             >  1:18541547/1‑35 (MQ=255)
                        tgtCCGGCTTTTGCGCCTCTTTCATGTCGACCTTg            >  1:16792668/1‑35 (MQ=255)
                        tgtCCGGCTTTTGCGCCTCTTTCATGTCGACCTTg            >  1:12675469/1‑35 (MQ=255)
                        tgtACGGCTTTTGCGCCTCTTTCATGTCGACCTTg            <  1:2510904/35‑1 (MQ=255)
                         gtCCGGCTTTTGCGCCTCTTTCATGTCGACCTTgt           <  1:5254794/35‑1 (MQ=255)
                         gtCCGGCTTTTGCGCCTCTTTCATGTCGACCTTgt           <  1:419931/35‑1 (MQ=255)
                         gtCCGGCTTTTGCGCCTCTTTCATGTCGACCTTgt           <  1:17958581/35‑1 (MQ=255)
                         gtCCGGCTTTTGCGCCTCTTTCATGTCGACCTTgt           <  1:7576348/35‑1 (MQ=255)
                         gtCCGGCTTTTGCGCCTCTTTCATGTCGACCTTgt           >  1:14626050/1‑35 (MQ=255)
                         gtCCGGCTTTTGCGCCTCTTTCATGTCGACCTTgt           <  1:9054008/35‑1 (MQ=255)
                          tCCGGCTTTTGCGCCTCTTTCATGTAGACCTTgta          <  1:11368496/35‑1 (MQ=255)
                           ccGGCTTTTGCGCCTCTTTCATGTTGACCTTctag         >  1:20526494/1‑35 (MQ=37)
                           ccGGCTTTTGCGCCTCTTTCATGTCGACCTTgtag         <  1:10945493/35‑1 (MQ=255)
                           ccGGCTTTTGCGCCTCTTTCATGTCGACCTTgtag         <  1:4260389/35‑1 (MQ=255)
                           ccGGCTTTTGCGCCTCTTTCATGTCGACCTTgtag         <  1:13264073/35‑1 (MQ=255)
                           ccGGCTTTTGCGCCTCTTTCATGTCGACCTTgtag         <  1:12566029/35‑1 (MQ=255)
                           ccGGCTTTTGCGCCTCTTTCATGTCGACCTTgtag         <  1:11246802/35‑1 (MQ=255)
                            cggcttTTGCGCCTCTTTCATGTCGACCTTgtagt        <  1:9618895‑M2/29‑1 (MQ=255)
                            cggcttTTGCGCCTCTTTCATGTCGACCTTgtagt        <  1:20261962‑M2/29‑1 (MQ=255)
                             ggcttTTGCGCCTCTTTCATGTCGACCTTgtagta       <  1:9929005‑M2/30‑1 (MQ=255)
                             ggcttTTGCGCCTCTTTCATGTCGACCTTgtagta       >  1:11107968‑M2/6‑35 (MQ=255)
                             ggcttTTGCGCCTCTTTCATGTCGACCTTgtagta       >  1:17621226‑M2/6‑35 (MQ=255)
                             ggcttTTGCGCCTCTTTCATGTCGACCTTgtagta       <  1:11862604‑M2/30‑1 (MQ=255)
                              gcttTTGCGCCTCTTTCATGTCGACCTTGTAGTAt      <  1:6140366‑M2/31‑1 (MQ=255)
                              gcttTTGCGCCTCTTTCATGTCGACCTTGTAGTAt      >  1:3818381‑M2/5‑35 (MQ=255)
                              gcttCTGCGCCTCTTTCATGTCGACCTTGTAGTAt      >  1:7668851‑M2/5‑35 (MQ=255)
                               cttTTGCGCCTCTTTCATGTCGACCTTGTAGTAtt     >  1:4617083‑M2/4‑35 (MQ=255)
                               cttTTGCGCCTCTTTCATGTCGACCTTGTAGTAtt     <  1:2256643‑M2/32‑1 (MQ=255)
                               cttTTGCGCCTCTTTCATGTCGACCTTGTAGTAtt     <  1:2395009‑M2/32‑1 (MQ=255)
                                ttTTGCGCCTCTTTCATGTCGACCTTGTAGTAttt    <  1:6951215‑M2/33‑1 (MQ=255)
                                ttTTGCGCCTCTTTCATGTCGACCTTGTAGTAttt    <  1:7746128‑M2/33‑1 (MQ=255)
                                ttTTGCGCCTCTTTCATGTCGACCTTGTAGTAttt    >  1:16756620‑M2/3‑35 (MQ=255)
                                ttTTGCGCCTCTTTCATGTCGACCTTGTAGTAttt    >  1:14292668‑M2/3‑35 (MQ=255)
                                ttTTGCGCCTCTTTCATGTCGACCTTGTAGTAttt    >  1:16026027‑M2/3‑35 (MQ=255)
                                 tTTGCGCCTCTTTCATGTCGACCTTGTAGTATTTa   >  1:19858420‑M2/2‑35 (MQ=255)
                                 tTTGCGCCTCTTTCATGTCGACCTTGTAGTATTTa   <  1:3750782‑M2/34‑1 (MQ=255)
                                  ttGCGCCTCTTTCATGTCGACCTTGTAGTATTTaa  <  1:10357905/35‑1 (MQ=255)
                                  ttGCGCCTCTTTCATGTCGACCTTGTAGTATTTaa  >  1:11922149/1‑35 (MQ=255)
                                  ttGCGCCTCTTTCATGTCGACCTTGTAGTATTTaa  <  1:6436185/35‑1 (MQ=255)
                                  |                                  
CGTTAAAGGTGCGGTAGCTGGCGGTGTCCGGCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTATTTAA  >  REL606/4368323‑4368391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.