New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 481061 =70 (0.680)12 (0.160) 4/34 NT 13.9% coding (2487/2505 nt) copA copper transporter
?REL606 = 606452 99 (1.360)coding (767/957 nt) fepB iron‑enterobactin transporter subunit

CGTCGATTACCGTAGTGAGTAACGCCAACCGGTTGCTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/481101‑481061
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcggGGTTAAACGGTGAATCGCTATTCCTGTTCGCCGG  <  REL606/606452‑606419
                                                                           
CGTCGATTACCGTAGTGAGTAACGCCAACCGGTTG                                          <  1:12261921/35‑1
CGTAGATTACCGTAGTGAGTAACGCCAACCGGTTG                                          <  1:5723877/35‑1
 GTCGATTACCGTAGTGAGTAACGCCAACCGGTTGg                                         >  1:6343375/1‑34
 GTCGATTACCGTAGTGAGTAACGCCAACCGGTTGC                                         >  1:14396318/1‑35
 GTCGATTACCGTAGTGAGTAACGCCAACCGGTTGC                                         <  1:12278064/35‑1
  TCGATTACCGTAGTGAGTAACGCCAACCGGTTGCT                                        >  1:8925933/1‑35
  TCGATTACCGTAGTGAGTAACGCCAACCGGTTGCT                                        >  1:6159102/1‑35
  TCGATTACCGTAGTGAGTAACGCCAACCGGTTGCT                                        <  1:16177431/35‑1
   CGATTACCGTAGTGAGTAACGCCAACCGGTTGCTG                                       <  1:19027797/35‑1
   CGATTACCGTAGTGAGTAACGCCAACCGGTTGCTG                                       <  1:18232041/35‑1
   CGATTACCGTAGTGAGTAACGCCAACCGGTTGCTG                                       >  1:6867161/1‑35
   CGATTACCGTAGTGAGTAACGCCAACCGGTTGCTG                                       >  1:7200518/1‑35
   CGATTACCGTAGTGAGTAACGCCAACCGGTTGCTG                                       >  1:1328044/1‑35
   CGATTACCGTAGTGAGTAACGCCAACCGGTTGCTG                                       <  1:16503606/35‑1
    GATTGCCGTAGTGAGTAACGCCAACCGGTTGCTGC                                      <  1:16946960/35‑1
    GATTACCGTAGTGAGTAACGCCAACCGGTTGCTGC                                      >  1:14145526/1‑35
    GATTACCGTAGTGAGTAACGCCAACCGGTTGCTGC                                      <  1:16682794/35‑1
    GATTACCGTAGTGAGTAACGCCAACCGGTTGCTGC                                      <  1:11364457/35‑1
    GATTACCGTAGTGAGTAACGCCAACCGGTTGCTGC                                      >  1:10913229/1‑35
    GATTACCGTAGTGAGTAACGCCAACCGGTTGCTGC                                      >  1:18816980/1‑35
    GATTACCGTAGTGAGTAACGCCAACCGGTTGCTGC                                      <  1:4105270/35‑1
     ATTCCCGTAGTGAGTAACGCCAACCGGTTGCTGCG                                     <  1:17911246/35‑1
     ATTACCGTAGTGAGTAACGCCAACCGGTTGCTGCG                                     <  1:15304272/35‑1
     ATTACCGTAGTGAGTAACGCCAACCGGTTGCTGCG                                     <  1:650680/35‑1
     ATTACCGTAGTGAGTAACGCCAACCGGTTGCTGCG                                     >  1:9383373/1‑35
     ATTACCGTAGTGAGTAACGCCAACCGGTTGCTGCG                                     >  1:11182399/1‑35
      ttgCCGTAGTGAGTAACGCCAACCGGTTGCTGCGG                                    <  1:2782672/32‑1
      TTACCGTAGTGAGTAACGCCAACCGGTTGGTGCGG                                    >  1:323954/1‑35
      TTACCGTAGTGAGTAACGCCAACCGGTTGCTGCGG                                    >  1:14141762/1‑35
      TTACCGTAGTGAGTAACGCCAACCGGTTGCTGCGG                                    <  1:1523438/35‑1
      TTACCGTAGTGAGTAACGCCAACCGGTTGCTGCGG                                    <  1:19770722/35‑1
      TTACCGTAGTGAGTAACGCCAACCGGTTGCTGCGG                                    <  1:4843577/35‑1
      TTACCGTAGTGAGTAACGCCAACCGGTTGCTGCGG                                    >  1:9334569/1‑35
      TTACCGTAGTGAGTAACGCCAACCGGTTGCTGCGG                                    <  1:6038541/35‑1
      TTACCGTAGTGAGTAACGCCAACCGGTTGCTGCGG                                    <  1:12181580/35‑1
       TACCGTAGTGAGTAACGCCAACCGGTTGCTGCGGG                                   >  1:1696148/1‑35
       TACCGTAGTGAGTAACGCCAACCGGTTGCTGCGGG                                   >  1:12790336/1‑35
        ACCGTAGTGAGTAACGCCAACCGGTTGCTGCGGGG                                  >  1:2802724/1‑35
          CGTAGTGAGTAACGCCAACCGGTTGCTGCGGTGTT                                >  1:8718491/1‑35
          CGTAGTGAGTAACGCCAACCGGTTGCTGCGGGTTT                                >  1:8507465/1‑35
          CGTAGTGAGTAACGCCAACCGGTTGCTGCGGGTTT                                >  1:10072066/1‑35
          CGTAGTGAGTAACGCCAACCGGTTGCTGCGGGTTT                                >  1:5323323/1‑35
           GTAGTGAGTAACGCCAACCGGTTGCTGCGGGTTTA                               >  1:3958296/1‑35
           GTAGTGAGTAACGCCAACCGGTTGCTGCGGGTTTA                               >  1:4258879/1‑35
           GTAGTGAGTAACGCCAACCGGTTGCTGCGGGTTTA                               >  1:1644092/1‑35
           GTAGTGAGTAACGCCAACCGGTTGCTGCGGGTTTA                               >  1:10288716/1‑35
            TAGTGAGTAACGCCAACCGGTTGCTGCGGGTTTAA                              >  1:16887407/1‑35
            TAGTGAGTAACGCCAACCGGTTGCTGCGGGTTTAA                              >  1:12414961/1‑35
            TAGTGAGTAACGCCAACCGGTTGCTGCGGGTTTAA                              >  1:1360440/1‑35
             AGTGAGTAACGCCAACCGGTTGCTGCGGGTTTAAc                             >  1:8164462/1‑34
             AGTGAGTAACGCCAACCGGTTGCTGCGGGTTTAAA                             >  1:644462/1‑35
             AGTGAGTAACGCCAACCGGTTGCTGCGGGGTTTAA                             >  1:16887233/1‑35
             AGTGAGTAACGCCAACCGGTTGCTGCGGGGTTAAA                             >  1:5860934/1‑35
             AGTGAGTAACGCCAACCGGTTGCTGCGGGGTTAAA                             >  1:14190448/1‑35
              GTGAGTAACGCCAACCGGTTGCTGCGGGTTTAAAC                            >  1:8175774/1‑35
              GTGAGTAACGCCAACCGGTTGCTGCGGGGTTAAcc                            >  1:18066211/1‑33
              GTGAGTAACGCCAACCGGTTGCTGCGGGGTTAAAC                            >  1:10324344/1‑35
               TGAGTAACGCCAACCGGTTGCTGCGGGGTTAAACG                           >  1:3637635/1‑35
                                 gaCTGCGGGGTTAAACGGTGAATCGCTATTCCTGT         <  1:17781161/33‑1
                                  GCTGCGGGGTTAAACGGTGAATCGCTATTCCTGTT        >  1:10548571/1‑35
                                  GCTGCGGGGTTAAACGGTGAATCGCTATTCCTGTT        <  1:13944458/35‑1
                                  GCTGCGGGGTTAAACGGTGAATCGCTATTCCTGTT        >  1:6596347/1‑35
                                  GCTGCGGGGTTAAACGGTGAATCGCTATTCCTGTT        >  1:15057274/1‑35
                                   CTGCGGGGTTAAACGGTGAATCGCTATTCCTGTTC       <  1:19144167/35‑1
                                   CTGCGGGGTTAAACGGTGAATCGCTATTCCTGTTC       <  1:8313476/35‑1
                                   CTGCGGGGTTAAACGGTGAATCGCTATTCCTGTTC       <  1:7392044/35‑1
                                   CTGCGGGGTTAAACGGTGAATCGCTATTCCTGTTC       <  1:16922913/35‑1
                                    TGCGGGGTTAAACGGTGAATCGCTATTCCTGTTCG      >  1:10042606/1‑35
                                    TGCGGGGTTAAACGGTGAATCGCTATTCCTGTTCG      >  1:10652768/1‑35
                                    TGCGGGGTTAAACGGTGAATCGCTATTCCTGTTCG      <  1:150528/35‑1
                                    TGCGGGGTTAAACGGTGAATCGCTATTCCTGTTCG      <  1:17474278/35‑1
                                    TGCGGGGTTAAACGGTGAATCGCTATTCCTGTTCG      >  1:1768374/1‑35
                                     GCGGGGTTAAACGGTGAATCGCTATTCCTGTTCGC     <  1:6950703/35‑1
                                     GCGGGGTTAAACGGTGAATCGCTATTCCTGTTCGC     <  1:13886599/35‑1
                                     GCGGGGTTAAACGGTGAATCGCTATTCCTGTTCGC     >  1:11195143/1‑35
                                      CGGGGTTAAACGGTGAATCGCTATTCCTGTTCGCC    >  1:6537336/1‑35
                                      CGGGGTTAAACGGTGAATCGCTATTCCTGTTCGCC    <  1:2928250/35‑1
                                       GGGGTTAAACGGTGAATCGCTATTCCTGTTCGCCG   >  1:1559398/1‑35
                                       GGGGTTAAACGGTGAATCGCTATTCCTGTTCGCCG   <  1:6257202/35‑1
                                       GGGGTTAAACGGTGAATCGCTATTCCTGTTCGCCG   <  1:17684331/35‑1
                                       GGGGTTAAACGGTGAATCGCTATTCCTGTTCGCCG   <  1:10653843/35‑1
                                       GGGGTTAAACGGTGAATCGCTATTCCTGTTCGCCG   >  1:439003/1‑35
                                       GGGGTTAAACGGTGAATCGCTATTCCTGTTCGCCG   >  1:3958013/1‑35
                                        GGGTTAAACGGTGAATCGCTATTCCTGTTCGCCGG  >  1:11452678/1‑35
                                                                           
CGTCGATTACCGTAGTGAGTAACGCCAACCGGTTGCTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/481101‑481061
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcggGGTTAAACGGTGAATCGCTATTCCTGTTCGCCGG  <  REL606/606452‑606419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.