New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1199795 = | 69 (0.670) | 4 (0.060) | 3/30 | NT | 7.4% | coding (20/828 nt) | potB | spermidine/putrescine ABC transporter membrane protein |
? | REL606 | = 3283512 | 57 (0.890) | intergenic (+39/‑175) | ptsO/yrbL | phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr)/hypothetical protein |
Only 100 of 164 total aligned reads displayed.
CATCACTTTGACATACAACTCCCTTCAAACTCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTC > REL606/3283478‑3283546 | catcaCTTTGACATACAACTCCCTTCAAACTcccc < 1:9111396/35‑1 (MQ=255) catcaCTTTGACATACAACTCCCTTCAAACTcccc < 1:1380966/35‑1 (MQ=255) catcaCTTTGACATACAACTCCCTTCAAACTcccc > 1:14576089/1‑35 (MQ=255) catcaCTTTGACATACAACTCCCTTCAAACTcccc > 1:20342971/1‑35 (MQ=255) catcaCTTTGACATACAACTCCCTTCAAACTcccc > 1:9631726/1‑35 (MQ=255) agcacTTTGACATACAACTCCCTTCAAACTCCCCc > 1:11608897‑M2/3‑34 (MQ=255) aTCACTTTGACATACAACTCCCTTCAAACTCCCCc > 1:10618766‑M2/1‑34 (MQ=255) tCACTTTGACATACAACTCCCTTCAAACTCCCCcc < 1:3670582‑M2/35‑3 (MQ=255) cACTTTGACATACAACTCCCTTCAAACTCCCCccg < 1:5457204‑M2/35‑4 (MQ=255) cACTTTGACATACAACTCCCTTCAAACTCCCCccg < 1:13530109‑M2/35‑4 (MQ=255) cACTTTGAAATACAACTCCCTTCAAACTCCCCccg > 1:10111896‑M2/1‑32 (MQ=255) aCTTTGACATACAACTCCCTTCAAACTCCCCccga < 1:18334360‑M2/35‑5 (MQ=255) aCTTTGACATACAACTCCCTTCAAACTCCCCccga < 1:20547763‑M2/35‑5 (MQ=255) aCTTTGACATACAACTCCCTTCAAACTCCCCccga > 1:17734722‑M2/1‑31 (MQ=255) aCTTTGACATACAACTCACTTCAAACTCCCCccga > 1:17901371‑M2/1‑31 (MQ=255) cTTTGACATACAACTCCCTTCAAACTCCTCccgac < 1:986674‑M2/35‑6 (MQ=255) cTTTGACATACAACTCCCTTCAAACTCCCCccgac < 1:2490102‑M2/35‑6 (MQ=255) tttGACATACAACTCCCTTCAAACTCCCCccgaca > 1:17103541‑M2/1‑29 (MQ=255) tttGACATACAACTCCCTTCAAACTCCCCccgaca < 1:9748028‑M2/35‑7 (MQ=255) tttGACATACAACTCCCTTCAAACTCCCCccgaca < 1:1532071‑M2/35‑7 (MQ=255) tttGACATACAACTCCCTTCAAACTCCCCccgaca > 1:16369798‑M2/1‑29 (MQ=255) tttGACATACAACTCCCTTCAAACTCCCCccgaca < 1:3305814‑M2/35‑7 (MQ=255) ttGACATACAACTCCCTTCAAACTCCCCccgacaa < 1:13099873‑M2/35‑8 (MQ=255) ttGACATACAACTCCCTTCAAACTCCCCccgacaa > 1:9072429‑M2/1‑28 (MQ=255) ttGACATACAACTCCCTTCAAACTCCCCccgacaa < 1:11825015‑M2/35‑8 (MQ=255) ttGACATACAACTCCCTTCAAACTCCCCccgacaa > 1:14140842‑M2/1‑28 (MQ=255) ttGACATACAACTCCCTTCAAACTCCCCccgacaa < 1:4016460‑M2/35‑8 (MQ=255) ttGACATACAACTCCCTTCAAACTCCCCccgacaa < 1:6827372‑M2/35‑8 (MQ=255) ttGACATACAACTCCCTTCAAACTCCCCccgacaa > 1:5887402‑M2/1‑28 (MQ=255) tGACATACAACTCCCTTCAAACTCCCCccgacaat < 1:4501734‑M2/35‑9 (MQ=255) aCATACAACTCCCTTCAAACTCCCCCCGACAATaa > 1:72105/1‑35 (MQ=255) aCATACAACTCCCTTCAAACTCCCCCCGACAATaa > 1:10778694/1‑35 (MQ=255) aCACACAACTCCCTTCAAACTCCCCCCGACAATaa > 1:18353690/1‑35 (MQ=255) cATACAACTCCCTTCAAACTCCCCCCGACAATAAg > 1:19782758/1‑35 (MQ=255) cATACAACCCCCTTCAAACCCCCCCCGACAATAAg < 1:18601850/35‑1 (MQ=255) aTACAACTCCCTTCAAACTCCCCCCGACAATAAGa > 1:3406399/1‑35 (MQ=255) aTACAACTCCCTTCAAACTCCCCCCGACAATAAGa > 1:4002507/1‑35 (MQ=255) tACAACTCCCTTCAAACTCCCCCCGACAATAAGaa > 1:8719140/1‑35 (MQ=255) tACAACTCCCTTCAAACTCCCCCCGACAATAAGaa > 1:15893413/1‑35 (MQ=255) aCAACTCCCTTCAACCCCCCCCCGACAATAAGaaa < 1:8693990/35‑1 (MQ=37) aCAACTCCCTTCAAACTCCCCCCGACAATAAGaaa > 1:11959291/1‑35 (MQ=255) aCAACTCCCTTCAAACTCCCCCCGACAATAAGaaa > 1:2528802/1‑35 (MQ=255) accTCCCTTCAAACTCCCCCCGACAATAAGAAAAt < 1:16732249/33‑1 (MQ=255) aaCTCCCTTCAAACTCCCCCCGACAATAAGAAAAt > 1:16625994/1‑35 (MQ=255) aaCTCCCTTCAAACTCCCCCCGACAATAAGAAAAt > 1:19511312/1‑35 (MQ=255) aCTCCCTTCAAACTCCCCCCGACAATAAGAAAATc > 1:7595515/1‑35 (MQ=255) aCTCCCTTCAAACTCCCCCCGACAATAAGAAAATc > 1:15247645/1‑35 (MQ=255) aCTCCCTTCAAACTCCCCCCGACAATAAGAAAATc > 1:3375104/1‑35 (MQ=255) aCTCCCTTCAAACTCCCCCCGACAATAAGAAAATc > 1:1155430/1‑35 (MQ=255) tCCCTTCAAACTCCCCCCGACAATAAGAAAATCAc > 1:20590476/1‑35 (MQ=255) tCCCTTCAAACTCCCCCCGACAATAAGAAAATCAc > 1:5718411/1‑35 (MQ=255) tCCCTTCAAACCCCCCCCGACAATAAGAAAATAAc < 1:13290949/35‑1 (MQ=37) ccccTTCAAACCCCCCCCGACAATAAGAAAATCAc < 1:11411302/34‑1 (MQ=255) cccTTCAACCCCCCCCCGACAATAAGAAAATCACg < 1:17964810/35‑1 (MQ=37) cccTTCAAACCCCCCCCGACAATAAGAAAATCACg < 1:19115363/35‑1 (MQ=255) cccTCCAAACTCCCCCCGACAATAAGAAAATCACg < 1:17142172/35‑1 (MQ=255) cccTACAACCCCCCCCCGACAATAAGAAAATCACg < 1:16161901/35‑1 (MQ=25) ncTTCAAACTCCCCCCGACAATAAGAAAANCACGt > 1:9947747/2‑35 (MQ=255) ccTTCAAACTCCCCCCGACAATAAGAAAATCACGt > 1:9382180/1‑35 (MQ=255) ccTTCAAACTCCCCCCGACAATAAGAAAATCACGt > 1:19478652/1‑35 (MQ=255) ccTTCAAACTCCCCCCGACAATAAGAAAATCACGt > 1:15149124/1‑35 (MQ=255) ccTTCAAACTCCCCCCGACAATAAGAAAATCACGt > 1:12771605/1‑35 (MQ=255) ccTTCAAACTCCCCCCGACAATAAGAAAATCACGt > 1:18599426/1‑35 (MQ=255) cTTCAAACTCCCCCCGACAATAAGAAAATCACGTa < 1:7000593/35‑1 (MQ=255) ttCAACCCCCCCCCGACAATAAGAAAATCACGTAc < 1:6199239/35‑1 (MQ=37) ttCAAACTCCCCCCGACAATAAGAAAATCACGTAc > 1:17363218/1‑35 (MQ=255) ttCAAACTCCCCCCGACAATAAGAAAATCACGTAc > 1:2288150/1‑35 (MQ=255) tCAAACTCCCCCCGACAATAAGAAAATCACGTACt > 1:11517326/1‑35 (MQ=255) tCAAACTCCCCCCGACAATAAGAAAATCACGTACt > 1:16960360/1‑35 (MQ=255) caacCCCCCccgacaatagtgacaatcactacatt > 1:7447060‑M2/2‑9 (MQ=255) aaaCTCCCCCCGACAATAAGAAAATCACGTACTGa > 1:18920958/1‑35 (MQ=255) aaaCCCCCCCCGACAATAAGAAAATCACGTACTGa < 1:2796074/35‑1 (MQ=255) aaaCCCCCCCCGACAATAAGAAAATCACGTACTGa < 1:16195537/35‑1 (MQ=255) aaCTCCCCCCGACAATAAGAAAATCACGTACTGaa > 1:12361860/1‑35 (MQ=255) aaCCCCCCccgacaatagtgacaatcactacattc > 1:786345‑M2/1‑8 (MQ=255) cccccccccgacaatagtgacaatcactacattct > 1:10082290‑M2/4‑7 (MQ=255) cccccccccGACAATAAGAAAATCACGTACTGaaa < 1:7794671/32‑1 (MQ=255) accccccccGACAATAAGAAAATCACGTACTGaaa < 1:15563862/32‑1 (MQ=255) aCTCCCCCCGACAATAAGAAAATCACGTACTGaaa > 1:19537785/1‑35 (MQ=255) aCTCCCCCCGACAATAAGAAAATCACGTACTGaaa > 1:6087757/1‑35 (MQ=255) aCTCCCCCCGACAATAAGAAAATCACGTACTGaaa > 1:13676101/1‑35 (MQ=255) ccccccccGACAATAAGAAAATCACGTACTGAAAt < 1:12179195/33‑1 (MQ=255) cTCCCCCCGACAATAAGAAAATCACGTACTGAAAt > 1:1526356/1‑35 (MQ=255) tCCCCCCGACAATAAGAAAATCACGTACTGAAATc > 1:11392897/1‑35 (MQ=255) tCCCCCCGACAATAAGAAAATCACGTACTGAAATc < 1:5358093/35‑1 (MQ=255) tCCCCACGACAATAAGAAAATCACGTACTGAAATc < 1:8888573/35‑1 (MQ=255) cccccccgacaatagtgacaatcactacattctgg > 1:9126804‑M2/2‑5 (MQ=255) cccccccGACAATAAGAAAATCACGTACTGAAATc < 1:6807006/34‑1 (MQ=255) ccccccGACAATAAGAAAATCACGTACTGAAATCg > 1:18234412/1‑35 (MQ=255) cccccgacaatagtgacaatcactacattctggaa > 1:11897271‑M2/1‑3 (MQ=255) cccccGACAGTAAGAAAAGCACGTACTGAAATCGt < 1:18849862/35‑1 (MQ=37) cccccGACAATAAGAAAATCACGTACTGAAATCGt < 1:13081877/35‑1 (MQ=255) cccccGACAATAAGAAAATCACGTACTGAAATCGt > 1:17243089/1‑35 (MQ=255) cccccGACAATAAGAAAATCACGTACTGAAATCGt < 1:16047965/35‑1 (MQ=255) ccccgacaatagtgacaatcactacattctggaac > 1:9316594‑M2/1‑2 (MQ=255) ccccgacaatagggacaatcactacattctggaac > 1:10951581‑M2/1‑2 (MQ=255) ccccGACAATAAGAAAATCACGTACTGAAATCGtt < 1:18472026/35‑1 (MQ=255) ccccGACAATAAGAAAATCACGTACTGAAATCGtt < 1:1581/35‑1 (MQ=255) cccGACAATAAGAAAATCACGTACTTAAATCGTtc > 1:16520892/1‑35 (MQ=255) cccGACAATAAGAAAATCACGTACTGAAATCGTtc < 1:4418844/35‑1 (MQ=255) | CATCACTTTGACATACAACTCCCTTCAAACTCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTC > REL606/3283478‑3283546 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |