Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,648,342 IS1 (–) +9 bp 28.2% intergenic (+195/‑221) ynfM → / → asr predicted transporter/acid shock protein precursor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1323488NA (NA)22 (0.210) 18/48 NT 26.6% noncoding (768/768 nt) IS1 repeat region
?REL606 = 1648350 38 (0.590)intergenic (+203/‑221) ynfM/asr predicted transporter/acid shock protein precursor
* ? REL606 1648342 =36 (0.600)7 (0.090) 6/36 NT 13.1% intergenic (+195/‑229) ynfM/asr predicted transporter/acid shock protein precursor
?REL606 = 3024712 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 180 total aligned reads displayed.

TGTGTCATTTATTACTGATGCGCAGTTATTCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCAA  >  REL606/1648308‑1648376
                                  |                                  
tgtgtCATTTATTACTGATGCGCAGTTATTCTAcc                                    >  1:2455801/1‑35 (MQ=255)
tgtgtCATTTATTACTGATGCGCAGTTATTCTAcc                                    >  1:5346035/1‑35 (MQ=255)
tgtgtCATTTATTACTGATGCGCAGTTATTCTAcc                                    >  1:7201921/1‑35 (MQ=255)
tgtgtCATTTATTACTGATGCGCAGTTATTCTAcc                                    <  1:8563387/35‑1 (MQ=255)
 gtgtCATTTATTACTGATGCGCAGTTATTCTACCg                                   <  1:1009340/35‑1 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   >  1:18219344‑M1/34‑35 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   >  1:16586982‑M1/34‑35 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   <  1:16251464‑M1/2‑1 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   <  1:20306430‑M1/2‑1 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   >  1:15640196‑M1/34‑35 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   >  1:1731857‑M1/34‑35 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   >  1:20547022‑M1/34‑35 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   >  1:2233413‑M1/34‑35 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   <  1:14846074‑M1/2‑1 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   >  1:2547356‑M1/34‑35 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   >  1:2547670‑M1/34‑35 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   >  1:2901790‑M1/34‑35 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   >  1:13456738‑M1/34‑35 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   >  1:7131642‑M1/34‑35 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   <  1:6936563‑M1/2‑1 (MQ=255)
 catacactaaatcagtaagttggcagcatcaccCg                                   >  1:1114706‑M1/34‑35 (MQ=255)
  tgtCATTTATTACTGATGCGCAGTTATTCTACCGc                                  >  1:14294137/1‑35 (MQ=255)
  tgtCATTTATTACTGATGCGCAGTTATTCTACCGc                                  >  1:4405346/1‑35 (MQ=255)
  atacactaaatcagtaagttggcagcatcaccCGc                                  >  1:12380815‑M1/33‑35 (MQ=255)
   tacactaaatcagtaagttggcagcatcaccCGCt                                 >  1:3405457‑M1/32‑35 (MQ=255)
   gtCATTTATTACTGATGCTCAGTTATTCTACCGCt                                 >  1:3310944/1‑35 (MQ=255)
   gtCATTTATTACTGATGCGCAGTTATTCTACCGCt                                 >  1:2650037/1‑35 (MQ=255)
    acactaaatgagtaagttggcagcatcaccCGCtt                                >  1:6667373‑M1/31‑35 (MQ=255)
    acactaaatcagtaagttggcagcatcaccCGctn                                >  1:11574430‑M1/31‑34 (MQ=255)
    acactaaatcagtaagttggcagcatcaccCGCtt                                <  1:13201916‑M1/5‑1 (MQ=255)
    acactaaatcagtaagttggcagcatcaccCGCtt                                <  1:19848572‑M1/5‑1 (MQ=255)
    acactaaatcagtaagttggcagcatcaccCGCtt                                >  1:19253386‑M1/31‑35 (MQ=255)
     cactaaatcagtaagttggcagcatcaccCGCttt                               >  1:11781430‑M1/30‑35 (MQ=255)
     cactaaatcagtaagttggcagcatcaccCGCttt                               >  1:3357324‑M1/30‑35 (MQ=255)
     cATTTATTACTGATGCGCAGTTATTCTACCGCttt                               <  1:433255/35‑1 (MQ=255)
      aTTTATTACTGATGCGCAGTTATTCTACCGCTTTg                              <  1:5195583/35‑1 (MQ=255)
      aTTTATTACTGATGCGCAGTTATTCTACCGCTTTg                              >  1:7486918/1‑35 (MQ=255)
       tttATTACTGATGCGCAGTTATTCTACCGCTTTGt                             <  1:15885983/35‑1 (MQ=255)
       tttATTACTGATGCGCAGTTATTCTACCGCTTTGt                             <  1:10069337/35‑1 (MQ=255)
       ctaaatcagtaagttggcagcatcaccCGCTTTGt                             <  1:10032007‑M1/8‑1 (MQ=255)
        ttattaCTGATGCGCAGTTATTCTACCGCTTTGTa                            >  1:5922325/1‑35 (MQ=255)
        ttattaCTGATGCGCAGTTATTCTACCGCTTTGTa                            <  1:11212721/35‑1 (MQ=255)
         tattaCTGATGCGCAGTTATTCTACCGCTTTGTaa                           <  1:6550115/35‑1 (MQ=255)
         tattaCTGATGCGCAGTTATTCTACCGCTTTGTaa                           >  1:8204674/1‑35 (MQ=255)
         tattaCTGATGCGCAGTTATTCTACCGCTTTGTaa                           <  1:16315751/35‑1 (MQ=255)
         tattaCTGATGCGCAGTTATTCTACCGCTTTGTAg                           <  1:14501247‑M2/35‑2 (MQ=255)
          attaCTGATGCGCAGTTATTCTACCGCTTTGTAag                          <  1:19066419/35‑1 (MQ=255)
          aatcagtaagttggcagcatcaccCGCTTTGTAag                          >  1:8915488‑M1/25‑35 (MQ=255)
           ttaCTGATGCGCAGTTATTCTACCGCTTTGTAagt                         >  1:18033844/1‑35 (MQ=255)
           ttaCTGATGCGCAGTTATTCTACCGCTTTGTAagt                         <  1:6201912/35‑1 (MQ=255)
           ttaCTGATGCGCAGTTATTCTACCGCTTTGTAagt                         >  1:9402484/1‑35 (MQ=255)
            tcagtaagttggcagcatcaccCGCTTTGTAagta                        <  1:7766393‑M1/13‑1 (MQ=255)
            tcagtaagttggcagcatcaccCGCTTTGTAagta                        >  1:19528771‑M1/23‑35 (MQ=255)
            tcagtaagttggcagcatcaccCGCTTTGTAagta                        <  1:9673636‑M1/13‑1 (MQ=255)
            taCTGATGCGCAGTTATTCTACCGCTTTGTAagta                        >  1:5720243/1‑35 (MQ=255)
             aCTGATGCGCAGTTATTCTACCGCTTTGTAagtag                       >  1:14615140/1‑35 (MQ=255)
             aCTGATGCGCAGTTATTCTACCGCTTTGTAagtag                       >  1:17994802/1‑35 (MQ=255)
             aCTGATGCCCAGTTATTCTACCGCTTTGTAagtag                       >  1:1141844/1‑35 (MQ=255)
              cTGATGCGCAGTTATTCTACCGCTTTGTAagtagt                      <  1:7908692/35‑1 (MQ=255)
                gATGCGCAGTTATTCTACCGCTTTGTAggtaatga                    <  1:17250351‑M2/35‑9 (MQ=255)
                gATGCGCAGTTATTCTACCGCTTTGTAAGTAGTaa                    >  1:16423083/1‑35 (MQ=255)
                gATGCGCAGTTATTCTACCGCTTTGTAAGTAGTaa                    >  1:4323392/1‑35 (MQ=255)
                gATGCGCAGTTATTATACCGCTTTGTAAGTAGTaa                    <  1:10543861/35‑1 (MQ=255)
                 aTGCGCAGTTATTCTACCGCTTTGTAggtaatgac                   <  1:18626996‑M2/35‑10 (MQ=255)
                 aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa                   <  1:10560611/35‑1 (MQ=255)
                 aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa                   >  1:12134625/1‑35 (MQ=255)
                 aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa                   >  1:9243855/1‑35 (MQ=255)
                   gcgcAGTTATTCTACCGCTTTGTAAGTAGTAAAAt                 <  1:7332265/35‑1 (MQ=255)
                   gcgcAGTTATTCTACCGCTTTGTAAGTAGTAAAAt                 <  1:13817037/35‑1 (MQ=255)
                   gcgcAGTTATTCTACCGCTTTGTAAGTAGTAAAAt                 <  1:11413052/35‑1 (MQ=255)
                    cgcAGTTATTCTACCGCTTTGTAggtaatgactcc                >  1:6917878‑M2/1‑23 (MQ=255)
                    cgcAGTTATTCTACCGCTTTGTAAGTAGTAAAATa                <  1:11481835/35‑1 (MQ=255)
                     gcAGTTATTCTACCGCTTTGTAAGTAGTAAAATAg               <  1:15597593/35‑1 (MQ=255)
                      cAGTTATTCTACCGCTTTGTAggtaatgactccaa              <  1:694466‑M2/35‑15 (MQ=255)
                        gTTATTCTACCGCTTTGTAAGTAGTAAAATAGTTa            >  1:2777342/1‑35 (MQ=255)
                        gTTATTCTACCGCTTTGTAAGTAGTAAAATAGTTa            >  1:5974791/1‑35 (MQ=255)
                        cagcatcaccCGCTTTGTAAGTAGTAAAATAGTTa            <  1:4664419‑M1/25‑1 (MQ=255)
                         ttATTCTACCGCTTTGTAggtaatgactccaactt           >  1:4869908‑M2/1‑18 (MQ=255)
                         ttATTCTACCGCTTTGTAggtaatgactccaactt           >  1:4531990‑M2/1‑18 (MQ=255)
                         ttATTCTACCGCTTTGTAAGTAGTAAAATAGTTaa           >  1:7606610/1‑35 (MQ=255)
                         agcatcaccCGCTTTGTAAGTAGTAAAATAGTTaa           <  1:16133894‑M1/26‑1 (MQ=255)
                          tATTCTACCGCTTTGTAAGTAGTAAAATAGTTAAc          <  1:17183952/35‑1 (MQ=255)
                          tATTCTACCGCTTTGTAAGTAGTAAAATAGTTAAc          <  1:190067/35‑1 (MQ=255)
                           aTTCTACCGCTTTGTAAGTAGTAAAATAGTTAAcc         <  1:3882955/35‑1 (MQ=255)
                            ttCTACCGCTTTGTAggtaatgactccaacttatt        <  1:5415439‑M2/35‑21 (MQ=255)
                            ttCTACCGCTTTGTAAGTAGTAAAATAGTTAAccc        >  1:14412657/1‑35 (MQ=255)
                             tCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCg       <  1:8296872/35‑1 (MQ=255)
                             tCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCg       <  1:12980634/35‑1 (MQ=255)
                              cTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGa      >  1:10164890/1‑35 (MQ=255)
                              cTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGa      <  1:11872667/35‑1 (MQ=255)
                               tACCGCTTTGTAAGTAGTAAAATAGTTAACCCGAt     <  1:323936/35‑1 (MQ=255)
                               tACCGCTTTGTAAGTAGTAAAATAGTTAACCCGAt     >  1:1502277/1‑35 (MQ=255)
                                ccCGCTTTGTAAGTAGTAAAATAGTTAAACCGATc    >  1:8077489‑M1/3‑35 (MQ=255)
                                aCCGCTTTGTAAGTAGTAAAATAGTTAACCCGATc    <  1:19337228/35‑1 (MQ=255)
                                aCCGCTTTGTAAGTAGTAAAATAGTTAACCCGATc    >  1:1061415/1‑35 (MQ=255)
                                aCCGCTTTGTAAGTAGTAAAATAGTTAACCCGATc    >  1:9863227/1‑35 (MQ=255)
                                 cCGCTTTGTAAGTAGTAAAATAGTTAACCCGAtc  >  1:9287313‑M1/2‑34 (MQ=255)
                                 cCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCa   <  1:14592670‑M1/34‑1 (MQ=255)
                                 cCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCa   >  1:18332120‑M1/2‑35 (MQ=255)
                                  CGCTTTGTAAGTAGTAAAATAGTTAACCCGATCaa  <  1:10295844‑M1/35‑1 (MQ=255)
                                  |                                  
TGTGTCATTTATTACTGATGCGCAGTTATTCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCAA  >  REL606/1648308‑1648376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.