Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,162,790 IS150 (–) +3 bp 41.7% coding (601‑603/1071 nt) plsX → fatty acid/phospholipid synthesis protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)45 (0.480) 28/44 NT 38.5% noncoding (1/1443 nt) IS150 repeat region
?REL606 1162790 = 62 (0.760)coding (601/1071 nt) plsX fatty acid/phospholipid synthesis protein
* ? REL606 = 666130NA (NA)46 (0.450) 24/48 NT 38.2% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 1162792 65 (0.720)coding (603/1071 nt) plsX fatty acid/phospholipid synthesis protein

Only 100 of 275 total aligned reads displayed.

CGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAT  >  REL606/664654‑664719
                                  |                               
gttttgtgcgagccatcttccaccctttgaaattt                                 >  1:18050576‑M1/33‑35 (MQ=255)
gttttgtgcgagccatcttccaccctttgaaattt                                 <  1:8259346‑M1/3‑1 (MQ=255)
cGTGAGCAGAAAGCCCGACACGCTCCAGCAGtttt                                 >  1:9765330/1‑35 (MQ=255)
cGTGAGCAGAAAGCCCGACACGCTCCAGCAGtttt                                 >  1:16534875/1‑35 (MQ=255)
 gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTg                                <  1:6372950/35‑1 (MQ=255)
  tttgtgcgagccatcttccaccctttgaaaTTtgc                               >  1:14605698‑M1/31‑34 (MQ=255)
   ttgtgcgagccatcttccaccctttgaaaTTTGTa                              >  1:7729859‑M1/30‑35 (MQ=255)
   ttgtgcgagccatcttccaccctttgaaaTTTGTa                              <  1:14194920‑M1/6‑1 (MQ=255)
    tgtgcgagccatcttccaccctttgaaaTTTGTAc                             >  1:2451480‑M1/29‑35 (MQ=255)
    aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAc                             >  1:4372639/1‑35 (MQ=255)
     gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAca                            >  1:11409604/1‑34 (MQ=255)
     gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACt                            <  1:11155362/35‑1 (MQ=255)
     gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACt                            >  1:13120544/1‑35 (MQ=255)
     gCAGAAAGCCCGACACGCTCCAGCAGTTTGTACTg                           >  1:4331342/1‑35 (MQ=38)
      tgcgagccatcttccaccctttgaaaTTTGTACTg                           >  1:3732767‑M1/27‑35 (MQ=255)
      cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg                           <  1:8718421/35‑1 (MQ=255)
      cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg                           <  1:20293126/35‑1 (MQ=255)
       gcgagccatcttccaccctttgaaaTTTGTACTGc                          <  1:5622097‑M1/10‑1 (MQ=255)
       gcgagccatcttccaccctttgaaaTTTGTACTGc                          >  1:15954720‑M1/26‑35 (MQ=255)
       gcgagccatcttccacactttgaaaTTTGTACTGc                          >  1:1156626‑M1/26‑35 (MQ=255)
       aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGc                          >  1:17824495/1‑35 (MQ=255)
       aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGc                          >  1:14648170/1‑35 (MQ=255)
        gAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCa                         <  1:17042191/35‑1 (MQ=255)
        gAAAGCCCGACACGCTACAGCAGTTTTGTACTGCa                         <  1:18368524/35‑1 (MQ=255)
        cgagccatcttccaccctttgaaaTTTGTACTGCa                         <  1:3511611‑M1/11‑1 (MQ=255)
        cgagccatcttccaccctttgaaaTTTGTACTGCa                         <  1:14253228‑M1/11‑1 (MQ=255)
        cgagccatcttccaccctttgaaaTTTGTACTGCa                         <  1:6795114‑M1/11‑1 (MQ=255)
          agccatcttccaccctttgaaaTTTGTACTGCAcc                       <  1:7211533‑M1/13‑1 (MQ=255)
          aaGCCCGACACGCTCCAGCAGTTTTGTACTGCAcc                       >  1:10498555/1‑35 (MQ=255)
           gccatcttccaccctttgaaaTTTGTACTGCAccc                      >  1:2809934‑M1/22‑35 (MQ=255)
            gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa                     <  1:19682940/35‑1 (MQ=255)
            ccatcttccaccctttgaagTTTGTACTGCACCCa                     >  1:12929704‑M1/21‑35 (MQ=255)
            ccatcttccaccctttgaaaTTTGTACTGCACCCa                     <  1:6591613‑M1/15‑1 (MQ=255)
             catcttccaccctttgaaaTTTGTACTGCACCCAt                    >  1:14973647‑M1/20‑35 (MQ=255)
             catcttccaccctttgaaaTTTGTACTGCACCCAt                    <  1:2166452‑M1/16‑1 (MQ=255)
             catcttccaccctttgaaaTTTGTACTGCACCCAt                    >  1:4054069‑M1/20‑35 (MQ=255)
             catcttccaccctttgaaaTTTGTACTGCACCCAt                    >  1:5268660‑M1/20‑35 (MQ=255)
              ccGACACGCTCCAGCAGTTTTGTACTGCACCCAtt                   <  1:18748609/35‑1 (MQ=255)
              atcttccaccctttgaaaTTTGTACTGCACCCAtt                   >  1:18662530‑M1/19‑35 (MQ=255)
              atcttccaccctttgaaaTTTGTACTGCACCCAtt                   <  1:4930010‑M1/17‑1 (MQ=255)
              atcttccaccctttgaaaTTTGTACTGCACCCAtt                   <  1:10006959‑M1/17‑1 (MQ=255)
              atcttccaccctttgaaaTTTGTACTGCACCCAtt                   >  1:13060475‑M1/19‑35 (MQ=255)
               tcttccaccctttgaaaTTTGTACTGCACCCAttt                  <  1:18225289‑M1/18‑1 (MQ=255)
                cttccaccctttgaaaTTTGTACTGCACCCAtttt                 <  1:3211092‑M1/19‑1 (MQ=255)
                 ttccaccctttgaaaTTTGTACTGCACCCATTttg                <  1:1790061‑M1/20‑1 (MQ=255)
                 ccacGCTCCAGCAGTTTTGTACTGCACCCATTttg                >  1:4073227/2‑35 (MQ=255)
                 acacGCTCCAGCAGTTTTGTACTGCACCCATTttg                >  1:19098451/1‑35 (MQ=255)
                  tccaccctttgaaaTTTGTACTGCACCCATTttgt               >  1:15789193‑M1/15‑35 (MQ=255)
                  cacGCTCCAGCAGTTTTGTACTGCACCCATTttgt               >  1:10857378/1‑35 (MQ=255)
                   ccaccctttgaaaTTTGTACTGCACCCATTttgtt              <  1:609149‑M1/22‑1 (MQ=255)
                   ccaccctttgaaaTTTGTACTGAACCCATTttgtt              >  1:9362902‑M1/14‑35 (MQ=255)
                    caccctttgaaaTTTGTACTGCACCCATTttgttg             <  1:7788120‑M1/23‑1 (MQ=255)
                    caccctttgaaaTTTGTACTGCACCCATTttgttg             <  1:3838957‑M1/23‑1 (MQ=255)
                    caccctttgaaaTTTGTACTGCACCCATTttgttg             <  1:15025159‑M1/23‑1 (MQ=255)
                    caccctttgaaaTTTGTACTGCACCCATTttgttg             >  1:18066957‑M1/13‑35 (MQ=255)
                    caccctttgaaaTTTGTACTGCACCCATTttgttg             >  1:16710471‑M1/13‑35 (MQ=255)
                     accctttgaaaTTTGTACTGCACCCATTTTGTTgg            <  1:12489198‑M1/24‑1 (MQ=255)
                     accctttgaaaTTTGTACTGCACCCATTTTGTTgg            <  1:7646432‑M1/24‑1 (MQ=255)
                     accctttgaaaTTTGTACTGCACCCATTTTGTTgg            >  1:5859062‑M1/12‑35 (MQ=255)
                     accctttgaaaTTTGTACTGCACCCATTTTGTTgg            >  1:19513930‑M1/12‑35 (MQ=255)
                     accctttgaaaTTTGTACTGCACCCATTTTGTTgg            <  1:19221906‑M1/24‑1 (MQ=255)
                      ccctttgaaaTTTGTACTGCACCCATTTTGTTGGa           >  1:17596520‑M1/11‑35 (MQ=255)
                      cTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa           <  1:8999582/35‑1 (MQ=255)
                        ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg         <  1:17383977‑M1/27‑1 (MQ=255)
                        ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg         <  1:15326868‑M1/27‑1 (MQ=255)
                        ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg         >  1:8536111‑M1/9‑35 (MQ=255)
                        ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg         <  1:14880756‑M1/27‑1 (MQ=255)
                        ctttgaaaTTTGTACTGAACCCATTTTGTTGGACg         >  1:3527261‑M1/9‑35 (MQ=255)
                        ccAGCAGTTTTGTACTGCACCCATTTTGTTGGACg         <  1:8000913/35‑1 (MQ=255)
                        ccAGCAGTTTTGTACTGCACCCATTTTGTTGGACg         <  1:13297853/35‑1 (MQ=255)
                         tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa        <  1:17954536‑M1/28‑1 (MQ=255)
                         tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa        <  1:7375556‑M1/28‑1 (MQ=255)
                         tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa        <  1:4486104‑M1/28‑1 (MQ=255)
                         tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa        >  1:2690236‑M1/8‑35 (MQ=255)
                         tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa        <  1:19248446‑M1/28‑1 (MQ=255)
                          ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt       <  1:6694722‑M1/29‑1 (MQ=255)
                          ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt       <  1:6231960‑M1/29‑1 (MQ=255)
                          ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt       >  1:10786943‑M1/7‑35 (MQ=255)
                          ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt       >  1:3003347‑M1/7‑35 (MQ=255)
                           tgaaaTTTGTACTGCACCCATTTTGTTGGACGATg      <  1:12650597‑M1/30‑1 (MQ=255)
                           tgaaaTTTGTACTGCACCCATTTTGTAGGACGATg      <  1:16788433‑M1/30‑1 (MQ=255)
                           gcagTTTTGTACTGCACCCATTTTGTTGGACGATg      >  1:12415538/1‑35 (MQ=255)
                           gcagTTTTGTACTGCACCCATTTTGTTGGACGATg      >  1:15595098/1‑35 (MQ=255)
                            gaaaTTTGTACTGCACCCATTTTGTTGGACGATGa     <  1:13552865‑M1/31‑1 (MQ=255)
                            gaaaTTTGTACTGCACCCATTTTGTTGGACGATGa     <  1:10061756‑M1/31‑1 (MQ=255)
                            cagTTTTGTACTGCACCCATTTTGTTGGACGATGa     <  1:14028119/35‑1 (MQ=255)
                            cagTTTTGTACTGCACCCATTTTGTTGGACGATGa     <  1:17808255/35‑1 (MQ=255)
                             aaaTTTGTACTGCACCCATTTTGTTGGACGATGaa    <  1:4089923‑M1/32‑1 (MQ=255)
                             aaaTTTGTACTGCACCCATTTTGTTGGACGATGaa    >  1:9627609‑M1/4‑35 (MQ=255)
                              gTTTTGTACTGCACCCATTTTGTTGGACGATGaaa   >  1:4682050/1‑35 (MQ=38)
                              caTGTGTACTGCACCCATTTTGTTGGACGATGaaa   <  1:10937490‑M1/33‑1 (MQ=255)
                              caTGTGTACTGCACCCATTTTGTTGGACGATGaaa   <  1:20114320‑M1/33‑1 (MQ=255)
                              aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa   <  1:12305354‑M1/33‑1 (MQ=255)
                              aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa   <  1:14001529‑M1/33‑1 (MQ=255)
                              aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa   <  1:10113413‑M1/33‑1 (MQ=255)
                              aaTTTATACTGCACCCATTTTGTTGGACGATGaaa   <  1:14334810‑M1/33‑1 (MQ=255)
                              aaCTTGTACTGCACCCATTTTGTTGGACGATGaaa   >  1:12069651‑M1/3‑35 (MQ=255)
                               aTTTGTACTGCACCCATTTTGTTGGACGATGAAAt  <  1:7037569‑M1/34‑1 (MQ=255)
                               aTTTGTACTGCACCCATTTTGTTGGACGATGAAAt  >  1:5401886‑M1/2‑35 (MQ=255)
                               aTTTGTACTGCACCCATTTTGTTGGACGATGAAAt  >  1:19016687‑M1/2‑35 (MQ=255)
                                  |                               
CGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAT  >  REL606/664654‑664719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.