New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 10617 =104 (1.010)21 (0.220) 7/44 NT 21.3% intergenic (‑125/+24) yaaH/yaaW conserved inner membrane protein associated with acetate transport/hypothetical protein
?REL606 = 3622975 60 (0.640)coding (1754/2619 nt) yhjO cellulose synthase, catalytic subunit

ACTCAGGTCTGACACCGTAAACCGGGGAAAATTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/10652‑10617
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcGCCACTCTTTCTGGAGTGAAATCTACGAAACGGT  <  REL606/3622975‑3622942
                                                                      
ACTCAGGTCTGACACCGTAAACCGGGGANNATTNN                                     >  1:18625227/1‑35
ACTCAGGTCTGACACCGTAAACCGGGGAACATTTT                                     <  1:681203/35‑1
ACTCAGGTCTGACACCGTAAACCGGGGAAAATTTT                                     <  1:5760391/35‑1
ACTCAGGTCTGACACCGTAAACCGGGGAAAATTTT                                     <  1:1845899/35‑1
ACTCAGGTCTGACACCGTAAACCGGGGAAAATTTT                                     >  1:8466173/1‑35
ACTCAGGTCTGACACCGTAAACCGGGGAAAATTTT                                     >  1:12671529/1‑35
ACTCAGGTCTGACACCGTAAACCGGGGAAAATTTT                                     <  1:10353378/35‑1
ACTCAGGTCTGACACCGTAAACCGGGGAAAATTTT                                     <  1:11927946/35‑1
ACTCAGGTCTGACACAGTAAACCGGGGAAAATTTT                                     <  1:18689318/35‑1
 CTCAGGTCTGACACCGTAAACCTGGGAAAATTTTC                                    >  1:5615979/1‑35
 CTCAGGTCTGACACCGTAAACCGGGGAAAATTTTC                                    >  1:7118710/1‑35
                    ACCCGGGAAAATTTTCGCCACTCTTTCTGGAGTGA                 <  1:6769080/35‑1
                     CCGGGGAAAATTTTCGCCACTCTTTCTGGAGTGAA                <  1:7508146/35‑1
                     CCGAGGAAAATTTTCGCCACTCTTTCTGGAGTGAA                <  1:834858/35‑1
                     CCGAGGAAAATTTTCGCCACTCTTTCTGGAGTGAA                <  1:17159400/35‑1
                      CGGGGAAATTTTTCGCCACTCTTTCTGGAGTGAAA               <  1:13651601/35‑1
                       cGGGAAATTTTTCGCCACTCTTTCTGGAGTGAAAT              <  1:3768284/34‑1
                       cGGGAAAATTTTCGCCACTCTTTCTGGAGTGAAAT              <  1:19868938/34‑1
                       aGGGAAAATTTTCGCCACTCTTTCTGGAGTGAAAT              <  1:5092523/34‑1
                        aGGAAAATTTTCGCCACTCTTTCTGGAGTGAAATC             <  1:7390140/34‑1
                        aGGAAAATTTTCGCCACTCTTTCTGGAGTGAAATC             <  1:10737717/34‑1
                        GGGAAAATTTTCGCCACTCTTTCTGGAGTGAAATC             <  1:17051944/35‑1
                          GAAAATTTTCGCCACTCTTTCTGGAGTGAAATCTA           <  1:16027961/35‑1
                          GAAAATTTTCGCCACTCTTTCTGGAGTGAAATCTA           <  1:10903863/35‑1
                           gAAATTTTCGCCACTCTTTCTGGAGTGAAATCTAC          <  1:16542000/34‑1
                           AAAATTTTCGCCACTCTTTCTGGAGTGAAATCTAC          <  1:15648879/35‑1
                           AAAATTTTCGCCACTCTTTCTGGAGTGAAATCTAC          <  1:18612228/35‑1
                           AAAAATTTCGCCACTCTTTCTGGAGTGAAATCTAC          <  1:6098567/35‑1
                            tAATTTTCGCCACTCTTTCTGGAGTGAAATCTACG         <  1:15618902/34‑1
                            aatTTTTCGCCACTCTTTCTGGAGTGAAATCTACG         <  1:4953566/32‑1
                            AAATTTTCGCCACTCTTTCTGGAGTGAAATCTACG         <  1:7923782/35‑1
                            AAATTTTCGCCACTCTTTCTGGAGTGAAATCTACG         <  1:942644/35‑1
                            AAATTTTCGCCACTATTTCTGGAGTGAAATCTACG         <  1:5448265/35‑1
                            AAAATTTCGCCACTCTTTCTGGAGTGAAATCTACG         <  1:1475611/35‑1
                             gATTTTCGCCACTCTTTCTGGAGTGAAATCTACGA        <  1:3295943/34‑1
                             aaaTTTCGCCACTCTTTCTGGAGTGAAATCTACGA        <  1:4602214/32‑1
                             AATTTTCGCCACTCTTTCTGGAGTGAAATCTACGA        <  1:3289514/35‑1
                             AATTTTCGCCACTCTTTCTGGAGTGAAATCTACGA        <  1:17653632/35‑1
                              ATTTTCGCCACTCTTTCTGGAGTGAAATCTACGAA       <  1:15147801/35‑1
                              ATTTTCGCCACTCTTTCTGGAGTGAAATCTACGAA       <  1:1827707/35‑1
                              ATTTTCGCCACTCTTTCTGGAGTGAAATCTACGAA       <  1:16675147/35‑1
                              ATTTTCGCCACTCTTTCTGGAGTGAAATCTACGAA       <  1:16364700/35‑1
                               aTTTCGCCACTCTTTCTGGAGTGAAATCTACGAAA      <  1:20338110/34‑1
                               TTTTCGCCACTCTTTCTGGAGTGAAATCTACGAAA      <  1:4874405/35‑1
                               TTTTCGCCACTCTTTCTGGAGTGAAATCTACGAAA      <  1:3471007/35‑1
                               TTTTCGCCACTCTTTCTGGAGTGAAATCTACGAAA      <  1:2189055/35‑1
                                TTTCGCCACTCTTTCTGGAGTGAAATCTACGAAAC     <  1:9783298/35‑1
                                TTTCGCCACTCTTTCTGGAGTGAAATCTACGAAAC     <  1:8978910/35‑1
                                TTTCGCCACTCTTTCTGGAGTGAAATCTACGAAAC     <  1:6130639/35‑1
                                TTTCGCCACTCTTTCTGGAGTGAAATCTACGAAAC     <  1:5891703/35‑1
                                TTTCGCCACTCTTTCTGGAGTGAAATCTACGAAAC     <  1:4517693/35‑1
                                TTTCGCCACTCTTTCTGGAGTGAAATCTACGAAAC     <  1:1731451/35‑1
                                 TTCGCCACTCTTTCTGGAGTGAAATCTACGAAACG    <  1:6391249/35‑1
                                  TCGCCACTCTTTCTGGAGTGAAATCTACTAAACGG   >  1:11028726/1‑35
                                  TCGCCACTCTTTCTGGAGTGAAATCTACGAAACGG   <  1:6662738/35‑1
                                  TCGCCACTCTTTCTGGAGTGAAATCTACGAAACGG   >  1:6029163/1‑35
                                  TCGCCACTCTTTCTGGAGTGAAATCTACGAAACGG   <  1:12105496/35‑1
                                   CGCCACTCTTTCTGGAGTGAAATCTACGAAACTGT  >  1:3263566/1‑35
                                   CGCCACTCTTTCTGGAGTGAAATCTACGAAACGGT  >  1:7192534/1‑35
                                   CGCCACTCTTTCTGGAGTGAAATCTACGAAACGGT  <  1:1686012/35‑1
                                   CGCCACTCTTTCTGGAGTGAAATCTACGAAACGGT  >  1:13306068/1‑35
                                   CGCCACTCTTTCTGGAGTGAAATCTACGAAACGGT  >  1:12525073/1‑35
                                                                      
ACTCAGGTCTGACACCGTAAACCGGGGAAAATTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/10652‑10617
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcGCCACTCTTTCTGGAGTGAAATCTACGAAACGGT  <  REL606/3622975‑3622942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.