New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1510513 =81 (0.790)16 (0.210) 4/36 NT 22.7% coding (256/681 nt) narV nitrate reductase 2 (NRZ), gamma subunit
?REL606 4138913 = 48 (0.620)coding (563/918 nt) oxyR DNA‑binding transcriptional dual regulator

Only 100 of 135 total aligned reads displayed.

AACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGT  >  REL606/4138879‑4138947
                                  |                                  
acccGCGAATGCGTACAGATGGCCGATCTGGCAgg                                    <  1:2976537/33‑1 (MQ=37)
aaCCGCGAATGCGTACCGATGGCCGATCTGGCAgg                                    >  1:15809659/1‑35 (MQ=255)
 aCCGCGAATGCGTACCGATGGCCGATCTGGCAggg                                   >  1:15799671/1‑35 (MQ=255)
 aCCGCGAATGCGTACCGATGGCCGATCTGGCAggg                                   >  1:18655832/1‑35 (MQ=255)
  ctggatgtacgcgtggtttttgccagtggcagggg                                  >  1:14217289‑M2/33‑35 (MQ=255)
  ctggatgtacgcgtggtttttgccagtggcagggg                                  >  1:6992413‑M2/33‑35 (MQ=255)
  ctggatgtacgcgtggtttttgccagtggcagggg                                  >  1:14286753‑M2/33‑35 (MQ=255)
  ccGCGAATGCGTACCGATGGCCGATCTGGCAgggg                                  >  1:12498131/1‑35 (MQ=255)
   tggatgtacgcgtggtttttgccagtggcaggggg                                 >  1:18372490‑M2/32‑34 (MQ=255)
   tggatgtacgcgtggtttttgccagtggcagGGGa                                 >  1:13793872‑M2/32‑35 (MQ=255)
   tggatgtacgcgtggtttttgccagtggcagGGGa                                 >  1:9157695‑M2/32‑35 (MQ=255)
   cgcgAATGCGTACCGATGGCCGATCTGGCAGGGGa                                 >  1:14468037/1‑35 (MQ=255)
    ggatgtacgcgtggtttttgccagtggcagGGGaa                                >  1:4731753‑M2/31‑35 (MQ=255)
    ggatgtacgcgtggtttttgccagtggcagGGAaa                                >  1:155723‑M2/31‑35 (MQ=255)
    gcgAATGCGTACCGATGGCCGATCTGGCAGGGGaa                                >  1:13260632/1‑35 (MQ=255)
    gcgAATGCGTACCGATGGCCGATCTGGCAGGGGaa                                >  1:5420297/1‑35 (MQ=255)
     cgAATGCGTACCGATGGCCGATCTGGCAGGGGaaa                               >  1:18980454/1‑35 (MQ=255)
      gAATGCGTACCGATGGCCGATCTGGCATGGGaaaa                              >  1:12971787/1‑35 (MQ=255)
      gAATGCGTACCGATGGCCGATCTGGCAGGGGgaaa                              >  1:3584005/1‑35 (MQ=255)
      gAATGCGTACCGATGGCCGATCTGGCAGGGGaaaa                              >  1:12865372/1‑35 (MQ=255)
      gAATGCGTACCGATGGCCGATCTGGCAGGGGaaaa                              >  1:3577497/1‑35 (MQ=255)
      atgtacgcgtggtttttgccagtggcagGggaaca                              >  1:4848659‑M2/29‑33 (MQ=255)
      atgtacgcgtggtttttgccagtggcagGGGgaaa                              >  1:15076180‑M2/29‑35 (MQ=255)
      atgtacgcgtggtttttgccagtggcagGGGaaaa                              >  1:5168016‑M2/29‑35 (MQ=255)
      atgtacgcgtggtttttgccagtggcagGGGaaaa                              >  1:16175088‑M2/29‑35 (MQ=255)
       tgtacgcgtggtttttgccagtggcagGGGaacaa                             >  1:6488679‑M2/28‑35 (MQ=255)
       tgtacgcgtggtttttgccagtggcagGGGaaaaa                             >  1:15300945‑M2/28‑35 (MQ=255)
       tgtacgcgtggtttttgccagtggcagGGGaaaaa                             >  1:4055017‑M2/28‑35 (MQ=255)
       aaTGCGTACCGATGGCCGATCTGGCAGGGGgaaaa                             >  1:9805540/1‑35 (MQ=255)
       aaTGCGTACCGATGGCCGATCTGGCAGGGGaaaaa                             >  1:12149921/1‑35 (MQ=255)
        gtacgcgtggtttttgccagtggcagGGgaaaaaa                            >  1:18051292‑M2/27‑34 (MQ=255)
        gtacgcgtggtttttgccagtggcagGGGAAAAAc                            >  1:3218785‑M2/27‑35 (MQ=255)
        gtacgcgtggtttttgccagtggcagGGGAAAAAc                            >  1:18133548‑M2/27‑35 (MQ=255)
        aTGCGTACCGATGGCCGATCTGGCAGGGGAAAAAc                            >  1:6035022/1‑35 (MQ=255)
        aTGCGTACCGATGGCCGATCTGGCAGGGGAAAAAc                            >  1:6945355/1‑35 (MQ=255)
         tacgcgtggtttttgccagtggcagGggaaaaaat                           >  1:13470823‑M2/26‑33 (MQ=255)
         tGCGTACCGATGGCCGATCTGGCAGGGGAAAAAct                           >  1:7124320/1‑35 (MQ=255)
         ggCGTCCCGTTGGCCGATCTGGCAGGGGAAAAAct                           <  1:3959085/34‑1 (MQ=37)
           cGTACCGATGGCCGATCTGGCAGGGGAGAAActgc                         >  1:17967763/1‑35 (MQ=255)
           cGTACCGATGGCCGATCTGGCAGGGGAAAAActgc                         >  1:16952560/1‑35 (MQ=255)
            gtcccGATGGCCGATCTGGCAGGGGAAAAActgct                        >  1:1228107/4‑35 (MQ=255)
            gTACCTATGGCCGATCTGGCAGGGGAAAAActgct                        >  1:6243877/1‑35 (MQ=255)
            gTACCGATGGCCGATCTGGCAGGGGAAAAActgct                        >  1:2686320/1‑35 (MQ=255)
            gTACCGATGGCCGATCTGGCAGGGGAAAAActgct                        >  1:12514498/1‑35 (MQ=255)
            gTACCGATGGCCGATCTGGCAGGGGAAAAActgct                        >  1:7593221/1‑35 (MQ=255)
            ctACCGTTGGCCGATCTGGCAGGGGAAAAActgct                        <  1:12478544/34‑1 (MQ=255)
              cccGTTGGCCGATCTGGCAGGGGAAAAACTGCTGa                      <  1:19513823/34‑1 (MQ=255)
              aCCGTTGGCCGATCTGGCAGGGGAAAAACTGCTGa                      <  1:8019519/35‑1 (MQ=255)
              aCCGATGGCCGATCTGGCAGGGGAAAAACTGCTGa                      >  1:12293729/1‑35 (MQ=255)
                gtttGGCCGATCTGGCAGGGGAAAAACTGCTGATg                    <  1:15605072/32‑1 (MQ=255)
                cGATGGCCGATCTGGCAGGGGAAAAACTGCTGATg                    >  1:19259164/1‑35 (MQ=255)
                 tttGGCCGATCTGGCAGGGGAAAAACTGCTGATGc                   <  1:8469691/33‑1 (MQ=255)
                 gATGGCCGATCTGGCAGGGGAAAAACTGCTGATGc                   >  1:14320447/1‑35 (MQ=255)
                  aTGGCCGATCTGGCAGGGGAAAAACTGCTGATGCt                  >  1:2379850/1‑35 (MQ=255)
                   tGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTg                 >  1:15880767/1‑35 (MQ=255)
                   tGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTg                 >  1:19280179/1‑35 (MQ=255)
                    ggCCGATCTGGCAGGGGAAAAACTGCTGATGCTgg                <  1:18907963/35‑1 (MQ=255)
                     gCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGa               <  1:16172601/35‑1 (MQ=255)
                      ccGATCTGGCAGGGGAAAAACTGCTGATGCTGGaa              >  1:17830555/1‑35 (MQ=255)
                      ccGATCTGGCAGGGGAAAAACTGCTGATGCTGGaa              >  1:3204098/1‑35 (MQ=255)
                       cGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAg             >  1:16573692/1‑35 (MQ=255)
                       cGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAg             <  1:17412218/35‑1 (MQ=255)
                        gATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGa            >  1:10585394/1‑35 (MQ=255)
                         aTCTTGCAGGGGAAAAACTGCTGATGCTGGAAGAt           >  1:19166291/1‑35 (MQ=255)
                         aTCTGGCAGGGGAAAAACTGCTGATGCTGGAAGAt           >  1:1082552/1‑35 (MQ=255)
                         aTCTGGCAGGGGAAAAACTGCTGATGCTGGAAGAt           >  1:11890243/1‑35 (MQ=255)
                         aTCTGGCAGGGGAAAAACTGCTGATGCTGGAAGAt           >  1:17569481/1‑35 (MQ=255)
                         aTCTGGCAGGGGAAAAACTGCTGATGCTGGAAGAt           <  1:469446/35‑1 (MQ=255)
                         aTCTGGCAGGGGAAAAACTGCTGATGCTGGAAGAt           >  1:18298169/1‑35 (MQ=255)
                          tCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATg          <  1:11389495/35‑1 (MQ=255)
                          tCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATg          <  1:15566452/35‑1 (MQ=255)
                          tCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATg          <  1:8628718/35‑1 (MQ=255)
                          tCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATg          >  1:2876676/1‑35 (MQ=255)
                          tCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATg          >  1:14008592/1‑35 (MQ=255)
                           cTGGCAGGGGAAAAACTGCTGATGCTGGAAGATgg         >  1:8238626/1‑35 (MQ=255)
                           cTGGCAGGGGAAAAACTGCTGATGCTGGAACATgg         >  1:11564281/1‑35 (MQ=255)
                            tggcagGGGAAAAACTGCTGATGCTGGAAGATGGt        >  1:17391189‑M2/7‑35 (MQ=255)
                            tggcagGGGAAAAACTGCTGATGCTGGAAGATGGt        >  1:2605623‑M2/7‑35 (MQ=255)
                            gggCGGGGAAAAACCTGCTGATGCTGGAAGATGGt        <  1:3757746/34‑1 (MQ=21)
                             ggcagTGGAAAAACTGCTGATGCTGGAAGATGGTc       >  1:14774237‑M2/6‑35 (MQ=255)
                             ggcagGGGAAAAACTGCTGATGCTGGAAGATGGTc       >  1:8323569‑M2/6‑35 (MQ=255)
                             ggcagGGGAAAAACTGCTGATGCTGGAAGATGGTc       <  1:6353235‑M2/30‑1 (MQ=255)
                             ggcagGGGAAAAACTGCTGATGCTGGAAGATGGTc       <  1:15790327‑M2/30‑1 (MQ=255)
                             ggCAGTGAAAAAACTGCTGATGCTGGAAGATGGTc       <  1:2301764/35‑1 (MQ=25)
                              gcagGGGAAAAACTGCTGATGCTGGAAGATGGTCa      <  1:12415044‑M2/31‑1 (MQ=255)
                               cagGGGAAAAACTGCTGATGCTGGAAGATGGTCAc     >  1:11399177‑M2/4‑35 (MQ=255)
                               cagGGGAAAAACTGCTGATGCTGGAAGATGGTCAc     >  1:8678283‑M2/4‑35 (MQ=255)
                                agGGGAAAACCTGCTGATGCTGGAAGATGGTCACt    <  1:19831934‑M2/33‑1 (MQ=255)
                                agGGGAAAAACTGCTGATGCTGGAAGATGGTGACt    <  1:13699389‑M2/33‑1 (MQ=255)
                                agGGGAAAAACTGCTGATGCTGGAAGATGGTCACt    >  1:5665835‑M2/3‑35 (MQ=255)
                                agGGGAAAAACTGCTGATGCTGGAAGATGGTCACt    >  1:5554757‑M2/3‑35 (MQ=255)
                                agGGGAAAAACTGCTGATGCTGGAAGATGGTCACt    >  1:4030228‑M2/3‑35 (MQ=255)
                                agGGGAAAAACTGCTGATGCTGGAAGATGGTCACt    >  1:10045599‑M2/3‑35 (MQ=255)
                                 ggggAAAACCTGCTGATGCTGGAAGATGGTCGCTg   <  1:18957654/35‑1 (MQ=25)
                                 gGGGAAAACCTGCTGATGCTGGAAGATGGTCACTg   <  1:7880410‑M2/34‑1 (MQ=255)
                                 gGGGAAAAACTGCTGATGCTGGAAGATGGTCACTg   >  1:18648749‑M2/2‑35 (MQ=255)
                                 gGGGAAAAACTGCTGATGCTGGAAGATGGTCACTg   <  1:12228879‑M2/34‑1 (MQ=255)
                                  gggAAAACCTGCTGATGCTGGAAGATGGTCACTGt  <  1:3183159/35‑1 (MQ=255)
                                  gggAAAACCTGCTGATGCTGGAAGATGGTCACTGt  <  1:18365403/35‑1 (MQ=255)
                                  gggAAAACCTGCTGATGCTGGAAGATGGTCACTGt  <  1:8810024/35‑1 (MQ=255)
                                  |                                  
AACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGT  >  REL606/4138879‑4138947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.