New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 294204 =76 (0.740)6 (0.070) 3/38 NT 10.8% intergenic (+474/‑53) ykgD/ykgE predicted DNA‑binding transcriptional regulator/predicted oxidoreductase
?REL606 = 2574914 39 (0.480)intergenic (+756/+62) sseA/sseB 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate

TACTTCATGCCCATTTATGCCCGATGTTTCCCCCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/294242‑294204
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccAGTAAATTGTCGCCGGAGAGACTCCGGTTATTAT  <  REL606/2574914‑2574881
                                                                         
TACTTCATGCCCATTTATGCCCGATGTTTCCCCCC                                        <  1:18270981/35‑1
TACTTCATGCCCATTTATGCCCGATGTTTCCCCCC                                        >  1:17621180/1‑35
 ACTTCATGCCCATTTATGCCCGATGTTTCCCCCCC                                       <  1:12018042/35‑1
 ACTTCATGCCCATTTATGCCCGATGTTTCCCCCCC                                       <  1:8427441/35‑1
  CTTCATGCCCATTTATGCCCGATGTTTCCCCCCCA                                      <  1:2120570/35‑1
  CTTCATGCCCATTTATGCCCGATGTTTCCCCCCCA                                      <  1:19229132/35‑1
  CTTCATGCCCATTTATGCCCGATGTTTCCCCCCCA                                      <  1:8317626/35‑1
  CTTCATGCCCATTTATGCCCGATGTTTCCCCCCCA                                      <  1:4823443/35‑1
   TTCATGCCCATTTATGCCCGATGTTTCCCCCCCAC                                     <  1:14660881/35‑1
   TTCATGCCCATTTATGCCCGATGTTTCCCCCCCAC                                     >  1:15196082/1‑35
   TTCATGCCCATTTATGCCCGATGTTTCCCCCCCAC                                     <  1:14167120/35‑1
   TTCATGCCCATTTATGCCCGATGTTTCCCCCCCAC                                     <  1:2891241/35‑1
   TTCATGCCCATTTATGCCCGATGTTTCCCCCCCAC                                     >  1:8353963/1‑35
   TTCATGCCCATTTATGCCCGATGTTTCCCCCCCAC                                     >  1:12959831/1‑35
   TTCATGCCCATTTATGCCCGATGTTTCCCCCCCAC                                     <  1:8963994/35‑1
   TTCATGCCCATTTATGCCCGATGTTTCCCCCCCAC                                     <  1:11640022/35‑1
    TCATGCCCATTTATGCCCGATGTTTCCCCCCCACC                                    >  1:1697024/1‑35
    TCATGCCCATTTATGCCCGATGTTTCCCCCCCACC                                    <  1:2539451/35‑1
    TCATGCCCATTTATGCCCGATGTTTCCCCCCCACC                                    >  1:7555802/1‑35
    TCATGCCCATTTATGCCCGATGTTTCCCCCCCACC                                    >  1:14068812/1‑35
    TCATGCCCATTTATGCCCGATGTTTCCCCCCCACC                                    >  1:1370730/1‑35
    TCATGCCCATTTATGCCCGATGTTTCCCCCCCACC                                    <  1:12100844/35‑1
    TCATGCCCATTTATGCCCGATGTTTCCCCCCCACC                                    >  1:10117112/1‑35
                        gGTTTCTCCCCCACCAGTAAATTGTCGCCGGAGAG                <  1:16335979/34‑1
                        TGTTTCCCCCCCACCAGTAAATTGTCGCCGGAGAG                <  1:2815950/35‑1
                         tTTTGCCCCCCACCAGTAAATTGTCGCCGGAGAGA               <  1:9226844/34‑1
                         GTTTCCCCCCCACCAGTAAATTGTCGCCGGAGAGA               <  1:4171774/35‑1
                         GTTTCCCCCCCACCAGTAAATTGTAGCCGGAGAGA               <  1:2817470/35‑1
                           tctCCCCCCACCAGTAAATTGTCGCCGGAGAGACN             <  1:10611803/32‑1
                           TTCCCCCCCACCAGTAAATTGTCGCCGGAGAGACT             <  1:11868187/35‑1
                            tctCCCCCACCAGTAAATTGTCGCCGGAGAGACTC            <  1:9563628/32‑1
                            cCCCCCCCACCAGTAAATTGTCGCCGGAGAGACTC            <  1:13285518/34‑1
                             tCCCCCCACCAGTAAATTGTCGCCGGAGAGACTCC           <  1:16044502/34‑1
                             CCCCCCCACCAGTAAATTGTCGCCGGAGAGACTCC           <  1:11719300/35‑1
                              CCCCCCACCAGTAAATTGTCGCCGGAGAGACTCCG          <  1:9264673/35‑1
                               CCCCCACCAGTAAATTGTCGCCGGAGAGACTCCGG         <  1:652926/35‑1
                                CCCCACCAGTAAATTGTCGCCGGAGAGACTCCGGT        <  1:12226152/35‑1
                                 CCCACCAGTAAATTGTCGCCGGAGAGACTCCGGTT       <  1:15218677/35‑1
                                  CCACCAGTAAATTGTCGCCGGAGAGACTCCGGTTA      >  1:10772502/1‑35
                                   CACCAGTAAATTGTCGCCGGAGAGACTCCGGTTAT     >  1:3449838/1‑35
                                   CACCAGTAAATTGTCGCCGGAGAGACTCCGGTTAT     <  1:19160850/35‑1
                                   CACCAGTAAATTGTCGCCGGAGAGACTCCGGTTAT     <  1:8847384/35‑1
                                   CACCAGTAAATTGTCGCCGGAGAGACTCCGGTTAT     >  1:9203392/1‑35
                                    ACCAGTAAATTGTCGCCGGAGAGACTCCGGTTATT    <  1:4752067/35‑1
                                    ACCAGTAAATTGTCGCCGGAGAGACTCCGGTTATT    <  1:14252286/35‑1
                                     CCAGTAAATTGTCGCCGGAGAGACTCCGGTTAgat   >  1:10838360/1‑32
                                     CCAGTAAATTGTCGCCGGAGAGACTCCGGTTATTA   <  1:5248395/35‑1
                                     CCAGTAAATTGTCGCCGGAGAGACTCCGGTTATTA   <  1:14193213/35‑1
                                      CAGTAAATTGTCGCCGGAGAGACTCCGGTTATTAT  >  1:9205534/1‑35
                                      CAGTAAATTGTCGCCGGAGAGACTCCGGTTATTAT  >  1:8075755/1‑35
                                      CAGTAAATTGTCGCCGGAGAGACTCCGGTTATTAT  <  1:16887462/35‑1
                                      CAGTAAATTGTCGCCGGAGAGACTCCGGTTATTAT  >  1:20457041/1‑35
                                                                         
TACTTCATGCCCATTTATGCCCGATGTTTCCCCCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/294242‑294204
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccAGTAAATTGTCGCCGGAGAGACTCCGGTTATTAT  <  REL606/2574914‑2574881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.