New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2713428 =47 (0.520)102 (1.130) 38/42 NT 68.5% noncoding (77/93 nt) serV tRNA‑Ser
?REL606 = 2774196 NA (NA)noncoding (1343/1343 nt) IS186 repeat region

Only 100 of 298 total aligned reads displayed.

GTATGCGGTCAAAAGCTGCATCCGGGGTTCGAATccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2713461‑2713428
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  <  REL606/2774196‑2774160
                                                                       
GTATGCGGTCAAAAGCTGCATCCGGGGTTCGAATC                                      <  1:19062013/35‑1
GTATGCGGTCAAAAGCTGCATCCGGGGTTCGAATC                                      >  1:15511318/1‑35
GTATGCGGTCAAAAGCTGCATCCGGGGTTCGAATC                                      >  1:6020900/1‑35
GTATGCGGTCAAAAGCTGCATCCGGGGTTCGAATC                                      <  1:20479415/35‑1
 TATGCTGTCAAAAGCTGCATCCGGGGTTCGAATCC                                     >  1:13217832/1‑35
 TATGCTGTCAAAAGCTGCATCCGGGGTTCGAATCC                                     >  1:18022217/1‑35
 TATGCGGTCAAAATCTGCATCCGGGGTTCGAATCC                                     >  1:4024129/1‑35
 TATGCGGTCAAAAGCTGCATCCGGGGTTCGAATCC                                     <  1:11198455/35‑1
  ATGCGGTCAAAAGCTGCATCCGGGGTTCGAATCCC                                    >  1:10534370/1‑35
  ATGCGGTCAAAAGCTGCATCCGGGGTTCGAATCCC                                    <  1:15774423/35‑1
  ATGCGGTCAAAAGCTGCATCCGGGGTTCGAATCCC                                    >  1:10212938/1‑35
   TGCGGTCAAAAGCTGCATCCGGGGTTCGAATCacc                                   <  1:10610167/35‑4
    GCGGTCAAAAGCTGCATCCGGGGTTCGAATCCCAT                                  <  1:18276050/35‑1
     CGGTCAAAAGCTGCATCCGGGGTTCGAATCCCATA                                 >  1:1512378/1‑35
        TCAAAAGCTGCATCCGGGGTTCGAATCCCATAAGC                              >  1:15313895/1‑35
         CAAAAGCTGCATCCGGGGTTCGAATCCCATAAGCN                             >  1:16983681/1‑35
         CAAAAGCTGCATCCGGGGTTCGAATCCCATAAGCG                             >  1:44734/1‑35
           AAAGCTGCATCCGGGGTTCGAATCCCATAAGCGCT                           >  1:20289940/1‑35
           AAAGCTGCATCCGGGGTTCGAATCCCATAAGCGCT                           >  1:717657/1‑35
            AAGCTGCATCCGGGGTTCGAATCCCATAAGCGCTA                          >  1:18863503/1‑35
            AAGCTGCATCCGGGGTTCGAATCCCATAAGCGCTA                          <  1:20166169/35‑1
            AAGCTGCATCCGGGGTTCGAATCCCATAAGCGCTA                          >  1:5848019/1‑35
             AGCTGCATCCGGGGTTCGAATCCCATAAGCGCTAA                         <  1:17637617/35‑1
             AGCTGCATCCGGGGTTCGAATCCCATAAGCGCTAA                         >  1:13026194/1‑35
             AGCTGCATCCGGGGTTCGAATCCCATAAGCGCTAA                         >  1:1357112/1‑35
             AGCTGCATCCGGGGTTCGAATCCCATAAGCGCTAA                         >  1:4236479/1‑35
              GCTGCATCCGGGGTTCGAATCCCATAAGCGCTAAC                        >  1:2125157/1‑35
              GCTGCATCCGGGGTTCGAATCCCATAAGCGCTAAC                        <  1:19325740/35‑1
               CTGCATCCGGTGTTCGAATCCCATAAGCGCTAACT                       >  1:3205563/1‑35
               CTGCATCCGGGGTTCGAATCCCATAAGCGCTAACT                       <  1:18713762/35‑1
                 GCATCCGGGGTTCGAATCCCATAAGCGCTAACTTA                     >  1:16600550/1‑35
                  CATCCGGGGTTCTAATCCCATAAGCGCTAACTTAA                    >  1:20203768/1‑35
                  CATCCGGGGTTCGAATCCCATAAGCGCTAACTTAA                    >  1:100979/1‑35
                   ATCCGGGGTTCGAATCCCATAAGCGCTAACTTAAG                   <  1:1838346/35‑1
                    TCCGGGGTTCGAATCCCATAAGCGCTAACTTAAGG                  <  1:5360156/35‑1
                    TCCGGGGTTCGAATCCCATAAGCGCTAACTTAAGG                  <  1:1623380/35‑1
                     CCGGGGTTCGAATCCCATAAGCGCTAACTTAAGGG                 >  1:19632007/1‑35
                     CCGGGGTTCGAATCCCATAAGCGCTAACTTAAGGG                 <  1:18135455/35‑1
                      CGGGGTTCGAATCCCATAAGCGCTAACTTAAGGGT                >  1:2966342/1‑35
                      CGGGGTTCGAATCCCATAAGCGCTAACTTAAGGGT                >  1:9463093/1‑35
                        GGGTTCGAATCCCATAAGCGCTAACTTAAGGGTTG              <  1:12880474/35‑1
                        GGGTTCGAATCCCATAAGCGCTAACTTAAGGGTTG              <  1:14851800/35‑1
                         GGTTCGAATCCCATAAGCGCTAACTTAAGGGTTGA             <  1:20048545/35‑1
                         GGTTCGAATCCCATAAGCGCTAACTTAAGGGTTGA             >  1:2147066/1‑35
                         GGTTCGAATCCCATAAGCGCTAACTTAAGGGTTGA             <  1:348381/35‑1
                          GTTCGAATCCCATAAGCGCTAACTTAAGGGTTGAA            >  1:13116076/1‑35
                            TCGAATCCCATAAGCGCTAACTTAAGGGTTGAACC          >  1:2330267/1‑35
                            TCGAATCCCATAAGCGCTAACTTAAGGGTTGAACC          >  1:2508278/1‑35
                            TCGAATCCCATAAGCGCTAACTTAAGGGTTGAACC          <  1:2893968/35‑1
                              ttATCCCATAAGCGCTAACTTAAGGGTTGAACCAT        <  1:10462480/33‑1
                              ttATCCCATAAGCGCTAACTTAAGGGTTGAACCAT        >  1:14612230/3‑35
                               tATCCCATAAGCGCTAACTTAAGGGTTGAACCATC       <  1:10882781/34‑1
                               cggCCCATAAGCGCTAACTTAAGGGTTGAACCATC       >  1:3759227/4‑35
                               agTCCCATAAGCGCTAACTTAAGGGTTGAACCATC       <  1:8413688/33‑1
                               AATCCCATAAGCGCTAACTTAAGGGTTGAACCATC       <  1:8741455/35‑1
                                ggCCCATAAGCGCTAACTTAAGGGTTGAACCATCT      >  1:968881/3‑35
                                agCCCATAAGCGCTAACTTAAGGGTTGAACCATCT      <  1:9252009/33‑1
                                ATCCCATAAGCGCTAACTTAAGGGTTGAACCATCT      >  1:1229606/1‑35
                                ATCCCATAAGCGCTAACTTAAGGGTTGAACCATCT      >  1:17170113/1‑35
                                ATCCCATAAGCGCTAACTTAAGGGTTGAACCATCT      >  1:2804221/1‑35
                                ATCCCATAAGCGCTAACTTAAGGGTTGAACCATCT      >  1:12636141/1‑35
                                ATCCCATAAGCGCTAACTTAAGGGTTGAACCATCT      <  1:14145445/35‑1
                                 tatCATAAGCGCTAACTTAAGGGTTGAACCATCTG     <  1:4634961/32‑1
                                 gCCCATAAGCGCTAACTTAAGGGTTGAACCATCTG     <  1:16790697/34‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTG     <  1:7679232/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTG     <  1:6322724/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTG     >  1:4770833/1‑35
                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTG     <  1:4296014/35‑1
                                  CCCATAATCGCTAACTTAAGGGTTGAACCATCTGA    <  1:10804108/35‑1
                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA    >  1:10060799/1‑35
                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA    >  1:7584676/1‑35
                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA    <  1:11669319/35‑1
                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA    <  1:7111731/35‑1
                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA    >  1:6540972/1‑35
                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA    <  1:17587478/35‑1
                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA    >  1:11885477/1‑35
                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA    >  1:580876/1‑35
                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA    >  1:5625633/1‑35
                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA    >  1:9131285/1‑35
                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA   >  1:8636375/1‑35
                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA   <  1:8279089/35‑1
                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA   >  1:17072225/1‑35
                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA   >  1:16018910/1‑35
                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA   >  1:15610755/1‑35
                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA   >  1:6677766/1‑35
                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA   <  1:8878210/35‑1
                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTAAA   <  1:11033630/35‑1
                                    CATAATCGCTAACTTAAGGGTTGAACCATCTGAAG  >  1:13980569/1‑35
                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  <  1:11510538/35‑1
                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  >  1:8029297/1‑35
                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  >  1:6786401/1‑35
                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  >  1:11983786/1‑35
                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  <  1:5748136/35‑1
                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  >  1:5179499/1‑35
                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  <  1:13479238/35‑1
                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  >  1:14380743/1‑35
                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  <  1:14795915/35‑1
                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  >  1:1647974/1‑35
                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  <  1:17364302/35‑1
                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  <  1:18551090/35‑1
                                                                       
GTATGCGGTCAAAAGCTGCATCCGGGGTTCGAATccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2713461‑2713428
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAG  <  REL606/2774196‑2774160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.