New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1306327 =87 (0.850)9 (0.140) 3/30 NT 15.9% intergenic (‑88/+283) cls/kch cardiolipin synthetase/voltage‑gated potassium channel
?REL606 = 3884923 41 (0.640)coding (1072/1890 nt) gidA glucose‑inhibited division protein A

ACCCCCGCCCCCGACGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1306345‑1306327
‑‑‑‑‑‑‑‑‑‑ccgacgctgGAGAGCAAGTTTATCCAGGGGCTGTTCTTTGCTG  <  REL606/3884923‑3884890
                                                     
cCCCCCCCCCCCGACGCTGGAGAGCAAGTTTATCC                    <  1:3710290/34‑1
 CCCCCCCCCCCGACGCTGGAGAGCAAGTTTATCCA                   <  1:6403791/35‑1
  CCCCCCCCCCGACGCTGGAGAGCAAGTTTATCCAG                  <  1:10799009/35‑1
  CCCCCCCCCCGACGCTGGAGAGCAAGTTTATCCAG                  <  1:4993558/35‑1
  CCCCCCCCCCGACGCTGGAGAGCAAGTTTATCCAG                  <  1:1332990/35‑1
   CCCCCCCCCGACGCTGGAGAGCAAGTTTATCCAGG                 <  1:16854373/35‑1
   CCCCCCCCCGACGCTGGAGAGCAAGTTTATCCAGG                 <  1:482860/35‑1
   CCCCCCCCCGACGCTGGAGAGCAAGTTTATCCAGG                 <  1:6545660/35‑1
   CCCCCCCCCGACGCTGGAGAGCAAGTTTATCCAGG                 <  1:623907/35‑1
    cccCCCCCGACGCTGGAGAGCAAGTTTATCCAGGG                <  1:6541698/32‑1
     ccCCCCCGACGCTGGAGAGCAAGTTTATCCAGGGG               <  1:17674231/33‑1
     ccCCCCCGACGCTGGAGAGCAAGTTTATCCAGGGG               <  1:2006030/33‑1
      cCCCCCGACGCTGGAGAGCAAGTTTATCCAGGGGC              <  1:8172764/34‑1
      cCCCCCGACGCTGGAGAGCAAGTTTATCCAGGGGC              <  1:1986119/34‑1
      cCCCCCGACGCTGGAGAGCAAGTTTATCCAGGGGC              <  1:20092454/34‑1
      cCCCCCGACGCTGGAGAGCAAGTTTATCCAGGGGC              <  1:7062122/34‑1
       CCCCCGACGCTGGAGAGCAGGTTTATCCAGGGGCT             <  1:6770817/35‑1
       CCCCCGACGCTGGAGAGCAAGTTTATCGAGGGGCT             <  1:11057782/35‑1
       CCCCCGACGCTGGAGAGCAAGTTTATCCAGGGGCT             <  1:5340334/35‑1
       CCCCCGACGCTGGAGAGCAAGTTTATCCAGGGGCT             <  1:5623750/35‑1
       CCCCCGACGCTGGAGAGCAAGTTTATCCAGGGGCT             <  1:16038391/35‑1
       CCCCCGACGCTGGAGAGCAAGTTTATCCAGGGGCT             <  1:10780355/35‑1
       CCCCCGACGCTGGAGAGCAAGTTTATCAAGGGGCT             <  1:10288919/35‑1
        CCCCGACGCTGGAGAGCAAGTTTGTCCAGGGGCTG            <  1:16618140/35‑1
        CCCCGACGCTGGAGAGCAAGTTTATCCAGGGGCTG            <  1:5555809/35‑1
        CCCCGACGCTGGAGAGCAAGTTTATCCAGGGGCTG            <  1:1820504/35‑1
        CCCCGACGCTGGAGAGCAAGTTTATCCAGGGGCTG            <  1:8234315/35‑1
        CCCCGACGCTGGAGAGCAAGTTTATCCAGGGGCTG            <  1:5924531/35‑1
        CCCCGACGCTGGAGAGCAAGTTTATCCAGGGGCTG            <  1:5915495/35‑1
         CCCGACGCTGGAGAGCAAGTTTATCCAGGGGCTGT           <  1:12965351/35‑1
          caGACGCTGGAGAGCAAGTTTATCCAGGGGCTGTT          <  1:13900055/33‑1
          CCGACGCTGGAGAGCAAGTTTATCCAGGGGCTGgg          >  1:356515/1‑33
          CCGACGCTGGAGAGCAAGTTTATCCAGGGGCTGTT          <  1:750125/35‑1
          CCGACGCTGGAGAGCAAGTTTATCCAGGGGCTGTT          <  1:20286921/35‑1
          CCGACGCTGGAGAGCAAGTTTATCCAGGGGCTGTT          <  1:4270302/35‑1
           CGACGCTGGAGAGCAAGTTTATCCAGGGGCTGggg         >  1:11547335/1‑32
           CGACGCTGGAGAGCAAGTTTATCCAGGGGCTGggg         >  1:7379626/1‑32
           CGACGCTGGAGAGCAAGTTTATCCAGGGGCTGTTC         <  1:2046542/35‑1
           CGACGCTGGAGAGCAAGTTTATCCAGGGGCTGTTC         <  1:16721411/35‑1
            GACGCTGGAGAGCAAGTTTATCCAGGGGCTGTTCT        <  1:4013723/35‑1
            GACGCTGGAGAGCAAGTTTATCCAGGGGCTGTTCT        <  1:3054985/35‑1
            GACGCTGGAGAGCAAGTTTATCCAGGGGCTGTTCT        <  1:4581970/35‑1
            GACGCTGGAGAGCAAGTTTATCCAGGGGCTGTTCT        <  1:7032122/35‑1
            GACGCTGGAGAGCAAGTTTATCCAGGGGCTGTTCT        <  1:17779774/35‑1
             ACGCTGGAGAGCAAGTTTATCCAGGGGCTGTTCTT       <  1:5661275/35‑1
             ACGCTGGAGAGCAAGTTTATCCAGGGGCTGTTCTT       <  1:20103935/35‑1
             ACGCTGGAGAGCAAGTTTATCCAGGGGCTGTTCTT       <  1:8205198/35‑1
             ACGCTGGAGAGCAAGTTTATCCAGGGGCTGTTCTT       <  1:11589656/35‑1
              CGCTGGAGAGCAAGTTTATCCAGGGGCTGTTCTTT      <  1:20535859/35‑1
              CGCTGGAGAGCAAGTTTATCCAGGGGCTGTTCTTT      <  1:1454548/35‑1
              CGCTGGAGAGCAAGTTTATCCAGGGGCTGTGCTTT      <  1:5788795/35‑1
               GCTGGAGAGCAAGTTTATCCAGGGGCTGTTCTTTG     <  1:12894880/35‑1
               GCTGGAGAGCAAGTTTATCCAGGGGCTGTTCTTTG     <  1:11525482/35‑1
                CTGGAGAGCAAGTTTATCCAGGGGCTGTTCTTTGC    <  1:20197864/35‑1
                 TGGAGAGCAAGTTTATCCAGGGGCTGTTCTTTGCT   <  1:9657874/35‑1
                 TGGAGAGCAAGTTTATCCAGGGGCTGTTCTTTGCT   <  1:15597200/35‑1
                 TGGAGAGCAAGTTTATCCAGGGGCTGTTCTTTGCT   <  1:13159320/35‑1
                  GGAGAGCAAGTTTATCCAGGGGCTGTTCTTTGCTG  <  1:2061972/35‑1
                  GGAGAGCAAGTTTATCCAGGGGCTGTTCTTTGCTG  <  1:18424574/35‑1
                  GGAGAGCAAGTTTATCCAGGGGCTGTTCTTTGCTG  <  1:17613835/35‑1
                  GGAGAGCAAGTTTATCCAGGGGCTGTTCTTTGCTG  <  1:8391205/35‑1
                  GGAGAGCAAGTTTATCCAGGGGCTGTTCTTTGCTG  <  1:10053639/35‑1
                                                     
ACCCCCGCCCCCGACGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1306345‑1306327
‑‑‑‑‑‑‑‑‑‑ccgacgctgGAGAGCAAGTTTATCCAGGGGCTGTTCTTTGCTG  <  REL606/3884923‑3884890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.