New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1922884 =47 (0.460)13 (0.150) 5/40 NT 20.9% intergenic (+109/+232) znuB/ruvB high‑affinity zinc transporter membrane component/Holliday junction DNA helicase B
?REL606 = 3625456 59 (0.690)pseudogene (7/738 nt) yhjQ b3534; cell division protein (chromosome partitioning ATPase)

GTCAGATAAGGCGCTCGCACCGCATCCGACATTGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1922921‑1922884
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGGGGGCGGGGAGG  <  REL606/3625456‑3625443
                                                    
GTCAGATAAGGCGCTCGCACCGCATCCGACATTGG                   >  1:1228163/1‑35
GTCAGATAAGGCGCTCGCACCGCATCCGACATTGG                   >  1:13267803/1‑35
 TCAGATAAGGCGCTCGCACCGCATCCGACATTGGC                  >  1:793743/1‑35
 TCAGATAAGGCGCTCGCACCGCATCCGACATTGGC                  >  1:20097699/1‑35
  CAGATAAGGCGCTCGCACCGCATCCGACATTGGCA                 >  1:8832737/1‑35
  CAGATAAGGCGCTCGCACCGCATCCGACATTGGCA                 >  1:17004197/1‑35
   AGATAAGGCGCTCGCACCGCATCCGACATTGGCAG                >  1:17240123/1‑35
   AGATAAGGCGCTCGCACCGCATCCGACATTGGCAG                >  1:18456838/1‑35
    GATAAGGCGCTCGCACCGCATCCGACATTGGCAGG               >  1:9149969/1‑35
    GATAAGGCGCTCGCACCGCATCCGACATTGGCAGG               >  1:14173342/1‑35
    GATAAGGCGCTCGCACCGCATCCGACATTGGCAGG               >  1:3902908/1‑35
     ATAAGGCGCTCGCACCGCATCCGACATTGGCAGGG              >  1:7474017/1‑35
     ATAAGGCGCTCGCACCGCATCCGACATTGGCAGGG              >  1:5950794/1‑35
      TAAGGCGCTCGCACCGCATCCGACATTGGCAGGGG             >  1:18304673/1‑35
      TAAGGCGCTCGCACCGCATCCGACATTGGCAGGGG             >  1:11311602/1‑35
       AAGGCGCTCGCACCGCATCCGACATTGGCAGGGGG            >  1:19553644/1‑35
       AAGGCGCTCGCACCGCATCCGACATTGGCAGGGGG            >  1:20078317/1‑35
       AAGGCGCTCGCACCGCATCCGACATTGGCAGGGGG            >  1:14884796/1‑35
        AGGCGCTCGCACCGCATCCGACATTGGCAGGGGGG           >  1:5353572/1‑35
           CGCTCGCACCTCATCCGACATTGGCAGGGGGGGCG        >  1:7155740/1‑35
           CGCTCGCACCGCATCCGACATTGGCAGGGGGGGtt        >  1:19197238/1‑33
           CGCTCGCACCGCATCCGACATTGGCAGGGGGGGgg        >  1:5798921/1‑33
           CGCTCGCACCGCATCCGACATTGGCAGGGGGGGCG        >  1:8504143/1‑35
            GCTCGCACCGCATCCGACATTGGCAGGGGGGGGGG       >  1:14016257/1‑35
            GCTCGCACCGCATCCGACATTGGCAGGGGGGGCGG       >  1:4660374/1‑35
            GCTCGCACCGCATCCGACATTGGCAGGGGGGGCGG       >  1:4661286/1‑35
            GCTCGCACCGCATCCGAAATTGGCAGGGGGGGCGG       >  1:18603571/1‑35
             CTCGCACCGCATCCGACATTGGCAGGGGGGGCGGG      >  1:17216264/1‑35
              TCGCACCGCATCCGACATTGGCAGGGGGGGGGGGG     >  1:9065337/1‑35
              TCGCACCGCATCCGAAATTGGCAGGGGGGGCGGGG     >  1:9425154/1‑35
               CGCACCGCATCCGACATTGGCAGGGGGGGTGGGGg    >  1:9233500/1‑34
                 CACCGCATCCGACATTGGCAGGGGGGGCGGGGGGG  >  1:15082620/1‑35
                                                    
GTCAGATAAGGCGCTCGCACCGCATCCGACATTGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1922921‑1922884
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGGGGGCGGGGAGG  <  REL606/3625456‑3625443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.