New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 575058 = | 51 (0.500) | 11 (0.140) | 3/38 | NT | 9.8% | coding (616/1449 nt) | cusS | sensory histidine kinase in two‑component regulatory system with CusR, senses copper ions |
? | REL606 | = 2762587 | 162 (1.990) | coding (1028/1140 nt) | nlpD | predicted outer membrane lipoprotein |
Only 100 of 152 total aligned reads displayed.
CTGACGCTGCGGATCGGCGCGTGACCTTTATGTACCGCCAACAGTACGATAAAGACGATCAGGATGCTG > REL606/575024‑575092 | gttccggtgctacccatggttgctattttttgccc > 1:1785127‑M1/35‑35 (MQ=255) gttccggtgctacccatggttgctattttttgccc < 1:4001940‑M1/1‑1 (MQ=255) gttccggtgctacccatggttgctattttttgccc < 1:3842055‑M1/1‑1 (MQ=255) gttccggtgctacccatggttgctattttttgccc > 1:19672488‑M1/35‑35 (MQ=255) gttccggtgctacccatggttgctattttttgccc > 1:14532419‑M1/35‑35 (MQ=255) gttccggtgctacccatggttgctattttttgccc < 1:920820‑M1/1‑1 (MQ=255) gttccggtgctacccatggttgctattttttgccc > 1:3342231‑M1/35‑35 (MQ=255) gttccggtgctacccatggttgctattttttgccc < 1:2183309‑M1/1‑1 (MQ=255) cTGACGCTGCGGATCGGCGCGTGACCTTTATGTAc < 1:14491879/35‑1 (MQ=255) cTGACGCTGCGGATCGGCGCGTGACCTTTATGTAc > 1:13843989/1‑35 (MQ=255) cTGACGCTGCGGATCGGCGCGTGACCTTTATGTAc > 1:2238916/1‑35 (MQ=255) ttccggtgctacccatggttgctattttttgcccc > 1:18148696‑M1/34‑35 (MQ=255) ttccggtgctacccatggttgctattttttgcccc > 1:6071053‑M1/34‑35 (MQ=255) ttccggtgctacacatggttgctattttttgcccc > 1:10813651‑M1/34‑35 (MQ=255) tGACGCTGCGGATCGGCGCGTGACCTTTATGTAcc < 1:16694762/35‑1 (MQ=255) tGACGCTGCGGATCGGCGCGTGACCTTTATGTAcc < 1:15844218/35‑1 (MQ=255) tGACGCTGCGGATCGGCGCGTGACCTTTATGTAcc > 1:12678881/1‑35 (MQ=255) tGACGCTGCGGATCGGCGCGTGACCTTTATGTAcc < 1:6810736/35‑1 (MQ=255) tGACGCTGCGGATCGGCGCGTGACCTTTATGTAcc < 1:3173572/35‑1 (MQ=255) tGACGCTGCGGATCGGCGCGTGACCTTTATGTAcc < 1:3601943/35‑1 (MQ=255) tccggtgctacccatggttgctattttttgccCCg > 1:7286111‑M1/33‑35 (MQ=255) tccggtgctacccatggttgctattttttgccCCg > 1:10081221‑M1/33‑35 (MQ=255) tccggtgctacccatggttgctattttttgccCCg > 1:1477336‑M1/33‑35 (MQ=255) tccggtgctacccatggttgctattttttgccCCg < 1:9467882‑M1/3‑1 (MQ=255) tccggtgctacccatggttgctattttttgccCCg > 1:14313798‑M1/33‑35 (MQ=255) tccggtgctacccatggttgctattttttgccCCg > 1:19884782‑M1/33‑35 (MQ=255) tccggtgctacccatggttgctattttttgccCCg > 1:8572959‑M1/33‑35 (MQ=255) gACGCTGCGGATCGGCGCGTGACCTTTATGTACCg > 1:3676860/1‑35 (MQ=255) gACGCTGCGGATCGGCGCGTGACCTTTATGTACCg > 1:13056773/1‑35 (MQ=255) ccggtgctacccatggttgctattttttgccCCGc > 1:13546465‑M1/32‑35 (MQ=255) ccggtgctacccatggttgctattttttgccCCGc > 1:19621687‑M1/32‑35 (MQ=255) ccggtgctacccatggttgctattttttgccCCGc < 1:19350300‑M1/4‑1 (MQ=255) ccggtgctacccatggttgctattttttgccCCGc < 1:3677138‑M1/4‑1 (MQ=255) ccggtgctacccatggttgctattttttgccCCGc > 1:12546184‑M1/32‑35 (MQ=255) aCGCTGCGGATCGGCGCGTGACCTTTATGTACCGc > 1:20224989/1‑35 (MQ=255) aCGCTGCGGATCGGCGCGTGACCTTTATGTACCGc > 1:9534485/1‑35 (MQ=255) cggtgctacccatggttgctattttttgccCCGcc < 1:6616701‑M1/5‑1 (MQ=255) cggtgctacccatggttgctattttttgccCCGcc > 1:5710627‑M1/31‑35 (MQ=255) cggtgctacccatggttgctattttttgccCCGcc < 1:7741533‑M1/5‑1 (MQ=255) cGCTGCGGATCGGCGCGTGACCTTTATGTACCGcc > 1:6864087/1‑35 (MQ=255) cGCTGCGGATCGGCGCGTGACCTTTATGTACCGcc > 1:3951727/1‑35 (MQ=255) cGCTGCGGATCGGCGCGTGACCTTTATGTACCGcc > 1:10573531/1‑35 (MQ=255) cGCTGCGGATCGGCGCGTGACCTTTATGTACCGcc > 1:16847605/1‑35 (MQ=255) gCTGCGGATCGGCGCGTGACCTTTATGTACCGCCa > 1:8815074/1‑35 (MQ=255) cTGCGGATCTGCGCGTGACCTTTATGTACCGCCaa > 1:16031819/1‑35 (MQ=255) cGGATCGGCGCTTTACCTTTATGTACCGCCACCAg > 1:1856637/1‑35 (MQ=25) cGGATCGGCGCGTGACCTTTATGTACCGCCAACAg > 1:2551909/1‑35 (MQ=255) cGGATCGGCGCGTGACCTTTATGTACCGCCAACAg > 1:2851653/1‑35 (MQ=255) gATCGGCGCGTGACCTTTATGTACCGCCAACAGTa > 1:4389740/1‑35 (MQ=255) tCGGCGCGTGACCTTTATGTACCGCCAACAGTACg > 1:19530844/1‑35 (MQ=255) cGGCGCGTGACCTTTATGTACTGCCAACAGTACGa > 1:5845770/1‑35 (MQ=255) cGGCGCGTGACCTTTATGTACCGCCAACAGTACGa > 1:17116568/1‑35 (MQ=255) cGGCGCGTGACCTTTATGTACCGCCAACAGTACGa > 1:4271713/1‑35 (MQ=255) cGGCGCGTGACCTTTATGTACCGCCAACAGTACGa > 1:11278965/1‑35 (MQ=255) cGGCGCGTGACCTTTATGTACCGCCAACAGTACGa > 1:12417098/1‑35 (MQ=255) cgcgTGACCTTTATGTACCGCCAACAGTACGATaa > 1:10196667/1‑35 (MQ=255) cgcgTGACCTTTATGTACCGCCAACAGTACGATaa > 1:13252786/1‑35 (MQ=255) gcgTGACCTTTATGTACCGCCAACAGTACGATaaa > 1:4476326/1‑35 (MQ=255) gcgTGACCTTTATGTACCGCCAACAGTACGATaaa > 1:3831779/1‑35 (MQ=255) gcgTGACCTTTATGTACCGCCAACAGTACGATaaa > 1:18400422/1‑35 (MQ=255) gcgTGACCTTTATGTACCGCCAACAGTACGATaaa > 1:19980693/1‑35 (MQ=255) cgTGACCTTTATGTACCGCCAACAGTACGATAAAg > 1:654234/1‑35 (MQ=255) gTGACCTTTATGTACCGCCAACAGTACGATAAAGa > 1:15538559/1‑35 (MQ=255) gTGACCTTTATGTACCGCCAACAGTACGATAAAGa > 1:10038287/1‑35 (MQ=255) tGACCTTTATGTACCGCCAACAGTACGATAAAGAc > 1:725404/1‑35 (MQ=255) tGACCTTTATGTACCGCCAACAGTACGATAAAGAc > 1:13943849/1‑35 (MQ=255) tGACCTTTATGTACCGCCAACAGTACGATAAAGAc > 1:13711602/1‑35 (MQ=255) gACCTTTATGTACCGCCAACAGTACGATAAAGACg > 1:8767349/1‑35 (MQ=255) gACCTTTATGTACCGCCAACAGTACGATAAAGACg > 1:1197695/1‑35 (MQ=255) ccttttATGTCCCGCCAACAGTACGATAAAGACGa < 1:3580529/32‑1 (MQ=37) cttttatgccCCGCCAACAGTACGATAAAGACGAt > 1:4252622‑M1/11‑35 (MQ=255) ttttatgccCCGCCAACAGTACGATAAAGACGATc > 1:8035776‑M1/10‑35 (MQ=255) cTTTATGTACCGCCAACAGTACGATAAAGACGATc > 1:18012035/1‑35 (MQ=255) cTTTATGTACCGCCAACAGTACGATAAAGACGATc > 1:7553354/1‑35 (MQ=255) ttttttccCCGCCAACAGTACGATAAAGACGATCa > 1:13429517‑M1/9‑35 (MQ=255) tttttgccCCGCCAACAGTACGATAAAGACGATCa > 1:7617607‑M1/9‑35 (MQ=255) tttatgccCCGCCAACAGTACGATAAAGACGATCa > 1:6239564‑M1/9‑35 (MQ=255) tttatgccCCGCCAACAGTACGATAAAGACGATCa > 1:19076177‑M1/9‑35 (MQ=255) tttATGTACCGCCAACAGTACGATAAAGACGATCa > 1:5194560/1‑35 (MQ=255) ttATGTACCGCCAACAGTACGATAAAGACGATCAg > 1:11036310/1‑35 (MQ=255) tttgccCCGCCAACAGTACGATAAAGACGATCAgg > 1:10491564‑M1/7‑35 (MQ=255) tATGTACCGCCAACAGTACGATAAAGACGATCAgg > 1:5456284/1‑35 (MQ=255) tATGTACCGCCAACAGTACGATAAAGACGATCAgg > 1:13453784/1‑35 (MQ=255) tATGTACCGCCAACAGTACGATAAAGACGATCAgg > 1:12136825/1‑35 (MQ=255) atcccCCGCCAACAGTACGATAAAGACGATCAGGa > 1:15367438‑M1/6‑35 (MQ=255) tttcCCGCCAACAGTACGATAAAGACGATCAGGAt > 1:15008832‑M1/5‑35 (MQ=255) tgccCCGCCAACAGTACGATAAAGACGATCAGGAt > 1:9151553‑M1/5‑35 (MQ=255) tctcCCGCCAACAGTACGATAAAGACGATCAGGAt > 1:19974404‑M1/5‑35 (MQ=255) tGTACCGCCAACAGTACGATAAAGACGATCAGGAt > 1:20391220/1‑35 (MQ=255) tGTACCGCCAACAGTACGATAAAGACGATCAGGAt > 1:11991609/1‑35 (MQ=255) tGTACCGCCAACAGTACGATAAAGACGATCAGGAt > 1:11414567/1‑35 (MQ=255) ttACCGCCAACAGTACGATAAAGACGATCAGGATg < 1:1756673/34‑1 (MQ=255) gTACCGCCAACAGTACGATAAAGACGATCAGGATg > 1:7891794/1‑35 (MQ=255) tACCGCCAACAGTACGATAAAGACGATCAGGATGc > 1:292975/1‑35 (MQ=255) ccCCGCCAACAGTACGATAAAGACGATCAGGATGc > 1:4807852‑M1/3‑35 (MQ=255) cCCGCCAACAGTACGATAAAGACGATCAGGATGCt > 1:9322037‑M1/2‑35 (MQ=255) cCCGCCAACAGTACGATAAAGACGATCAGGATGCt > 1:10030053‑M1/2‑35 (MQ=255) CCGCCAACAGTACGATAAAGACGATCAGGATGCTg < 1:2930767‑M1/35‑1 (MQ=255) CCGCCAACAGTACGATAAAGACGATCAGGATGCTg < 1:16252893‑M1/35‑1 (MQ=255) CCGCAAACAGTACGATAAAGACGATCAGGATGCTg > 1:18863688‑M1/1‑35 (MQ=255) | CTGACGCTGCGGATCGGCGCGTGACCTTTATGTACCGCCAACAGTACGATAAAGACGATCAGGATGCTG > REL606/575024‑575092 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |