New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1076727 =60 (0.580)8 (0.090) 5/40 NT 14.4% coding (1182/2547 nt) torA trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit
?REL606 3786648 = 45 (0.530)coding (75/339 nt) ECB_03525 conserved hypothetical protein

Only 100 of 135 total aligned reads displayed.

AGTGGGCGTGGATGATTGTGGTTCTGGCGGCGATGCTGGGGCAAATTGGCCTGCCAGGTGGTGGTTTTG  >  REL606/1076693‑1076761
                                  |                                  
gctcaaacatgccgttatcacagttggcggccagg                                    <  1:5147051‑M1/1‑1 (MQ=255)
gctcaaacatgccgttatcacagttggcggccagg                                    >  1:18295397‑M1/35‑35 (MQ=255)
aGTGGGCGTGGATGATTGTGGTTCTGGCGGCGATg                                    <  1:7604315/35‑1 (MQ=255)
aGTGGGCGTGGATGATTGTGGTTCTGGCGGCGATg                                    <  1:13881153/35‑1 (MQ=255)
 gTGGGCGTGGATGATTGTGGTTCTGGCGGCGATGc                                   <  1:15676744/35‑1 (MQ=255)
 ctcaaacatgccgttatcacagttggcggccagGc                                   >  1:3367634‑M1/34‑35 (MQ=255)
 ctcaaacatgccgttatcacagttggcggccagGc                                   <  1:15678713‑M1/2‑1 (MQ=255)
  tcaaacatgccgttatcacagttggcggccagGCt                                  <  1:8507605‑M1/3‑1 (MQ=255)
  tcaaacatgccgttatcacagttggcggccagGCt                                  <  1:2756243‑M1/3‑1 (MQ=255)
  tcaaacatgccgttatcacagttggcggccagGCt                                  >  1:19010127‑M1/33‑35 (MQ=255)
  tcaaacatgccgttatcacagttggcggccagGCt                                  >  1:17369187‑M1/33‑35 (MQ=255)
  tcaaacatgccgttatcacagttggcggccagGCt                                  <  1:5172150‑M1/3‑1 (MQ=255)
  tGGGCGTGGATGATTGTGGTTCTGGCGGCGATGCt                                  <  1:1436022/35‑1 (MQ=255)
  tGGGCGTGGATGATTGTGGTTCTGGCGGCGATGCt                                  <  1:10111387/35‑1 (MQ=255)
   caaacatgccgttatcacagttggcggccagGCTg                                 >  1:19478588‑M1/32‑35 (MQ=255)
   caaacatgccgttatcacagttggcggccagGCTg                                 >  1:13362535‑M1/32‑35 (MQ=255)
   caaacatgccgttatcacagttggcggccagGCTg                                 >  1:378190‑M1/32‑35 (MQ=255)
    ggCGTGGATGATTGTGGTTCTGGCGGCGATGCTgg                                <  1:4208285/35‑1 (MQ=255)
    ggCGTGGATGATTGTGGTTCTGGCGGCGATGCTgg                                <  1:586555/35‑1 (MQ=255)
    ggCGTGGATGATTGTGGTTCTGGCGGCGATGCTgg                                <  1:5923338/35‑1 (MQ=255)
    aaacatgccgttatcacagttggcggccagGCTgg                                <  1:13965963‑M1/5‑1 (MQ=255)
    aaacatgccgttatcacagttggcggccagGCTgg                                <  1:15097603‑M1/5‑1 (MQ=255)
     gCGTGGATGATTGTGGTTCTGGCGGCGATGCTggg                               <  1:8054607/35‑1 (MQ=255)
     aacatgccgttatcacagttggcggccagGCTggg                               <  1:11612674‑M1/6‑1 (MQ=255)
     aacatgccgttatcacagttggcggccagGCTggg                               <  1:894581‑M1/6‑1 (MQ=255)
      cGTGGATGATTGTGGTTCTGGCGGCGATGCTgggg                              <  1:10699991/35‑1 (MQ=255)
       gTGGATTATTGTGGTTCTGGCGGCGATGCTGGGGc                             <  1:2143772/35‑1 (MQ=255)
        atgccgttatcacagttggcggccaggctgggcaa                            <  1:15175033‑M1/9‑4 (MQ=255)
        atgccgttatcacagttggcggccagGCTGGGGCa                            <  1:2798884‑M1/9‑1 (MQ=255)
         tgccgttatcacagttggcggccagGCTGGGGcat                           <  1:1310456‑M1/10‑2 (MQ=255)
         ggATGATTGTGGTTCTGGCGGCGATGCTGGGGCaa                           <  1:3055702/35‑1 (MQ=255)
          gccgttatcacagttggcggccagGCTGGGGGaaa                          <  1:194887‑M1/11‑1 (MQ=255)
          gatgatTGTGGTTCTGGCGGCGATGCTGGGGCaaa                          <  1:16279828/35‑1 (MQ=255)
           atgatTGTGGTTCTGGCGGCGATGCTGGGGCAAAt                         <  1:17266735/35‑1 (MQ=255)
            tgatTGTGGTTCTGGCGGCGATGCTGGGGCAAAtt                        <  1:3050299/35‑1 (MQ=255)
            tgatTGTGGTTCTGGCGGCGATGCTGGGGCAAAtt                        <  1:5809796/35‑1 (MQ=255)
            cgttatcacagttggcggccagGCTGGGGCATAtt                        <  1:10905499‑M1/13‑1 (MQ=255)
            cgttatcacagttggcggccagGCTGGGGCATAtt                        <  1:9249030‑M1/13‑1 (MQ=255)
             gatTGTGGTTCTGGCGGCGATGCTGGGGCAAATTg                       <  1:9655097/35‑1 (MQ=255)
             gatTGTGGTTCTGGCGGCGATGCTGGGGCAAATTg                       <  1:14431847/35‑1 (MQ=255)
              tttGTGGTTCTGGCGGCGATGCTGGGGCAAATTgg                      <  1:13584589/34‑1 (MQ=255)
              atTGTGGTTCTGGCGGCGATGCTGGGGCAAATTgg                      <  1:13445002/35‑1 (MQ=255)
              atTGTGGTTCTGGCGGCGATGCTGGGGCAAATTgg                      <  1:18459791/35‑1 (MQ=255)
              atTGTGGTTCTGGCGGCGATGCTGGGGCAAATTgg                      <  1:11714489/35‑1 (MQ=255)
              atTGTGGTTCTGGCGGCGATGCTGGGGCAAATTgg                      <  1:8014887/35‑1 (MQ=255)
               ttGTGGTTCTGGCGGCGATGCTGGGGCAAATTGGc                     <  1:10160116/35‑1 (MQ=255)
               ttGTGGTTCTGGCGGCGATGCTGGGGCAAATTGGc                     <  1:13213235/35‑1 (MQ=255)
               ttGTGGTTCTGGCGGCGATGCTGGGGCAAATTGGc                     <  1:13821134/35‑1 (MQ=255)
                tgtgGTTCTGGCTGCGATGCTGGGGCAAATTGGcc                    >  1:760694/1‑35 (MQ=255)
                tgtgGTTCTGGCGGCGATGCTGGGGCAAATTGGcc                    <  1:18756695/35‑1 (MQ=255)
                tgtgGTTCTGGCGGCGATGCTGGGGCAAATTGGcc                    <  1:15105973/35‑1 (MQ=255)
                 gtgGTTCTGGCGGCGATGCTGGGGCAAATTGGCCt                   <  1:6915676/35‑1 (MQ=255)
                 gtgGTTCTGGCGGCGATGCTGGGGCAAATTGGCCt                   <  1:12825460/35‑1 (MQ=255)
                 gtgGTTCTGGCGGCGATGCTGGGGCAAATTGGCCt                   <  1:13178592/35‑1 (MQ=255)
                  tgGTTCTGGCGGCGATGCTGGGGCAAATTGGCCTg                  <  1:12537331/35‑1 (MQ=255)
                  tgGTTCTGGCGGCGATGCTGGGGCAAATTGGCCTg                  <  1:6580485/35‑1 (MQ=255)
                  tgGTTCTGGCGGCGATGCTGGGGCAAATTGGCCTg                  <  1:19434691/35‑1 (MQ=255)
                   ggTTCTGGCGGCGATGCTGGGGCAAATTGGCCTGc                 <  1:11550826/35‑1 (MQ=255)
                    gTTCTGGCGGCGGTGCTGGGGCAAATTGGCCTGcc                <  1:3819343/35‑1 (MQ=255)
                    gTTCTGGCGGCGATGCTGGGGCAAATTGGCCTGcc                <  1:12352169/35‑1 (MQ=255)
                     ttCTGGCGGCGATGCTGGGGCAAATTGGCCTGCCa               <  1:8506281/35‑1 (MQ=255)
                     ttCTGGCGGCGATGCTGGGGCAAATTGGCCTGCCa               <  1:9264576/35‑1 (MQ=255)
                      tCTGGCGGCGATGCTGGGGCAAATTGGCCTGCCAg              <  1:709560/35‑1 (MQ=255)
                       cTGGCGGCGATGCTGGGGCAAATTGGCCTGCCAgg             <  1:4600147/35‑1 (MQ=255)
                       cTGGCGGCGATGCTGGGGCAAATTGGCCTGCCAgg             <  1:11072375/35‑1 (MQ=255)
                       cTGGCGGCGACGCTGGGGCAAATTGGCCTGCCAgg             <  1:15875147/35‑1 (MQ=255)
                        tGGCGGCGATGCTGGGGCAAATTGGCCTGCCAggt            <  1:6079792/35‑1 (MQ=255)
                        tGGCGGCGATGCTGGGGCAAATTGGCCTGCCAggt            <  1:6100612/35‑1 (MQ=255)
                        tGGCGGCGATGCTGGGGCAAATTGGCCTGCCAggt            <  1:2316643/35‑1 (MQ=255)
                        tGGCGGCGATGCTGGGGCAAATTGGCCTGCCAggt            <  1:19987946/35‑1 (MQ=255)
                         ggcggcGATGCTGGGGCAAATTGGCCTGCCAggtg           <  1:14769321/35‑1 (MQ=255)
                         ggcggcGATGCTGGGGCAAATTGGCCTGCCAggtg           <  1:16306272/35‑1 (MQ=255)
                           cggcgATGCTGGGGCAAATTGGCCTGCCAggtggt         <  1:6415802/35‑1 (MQ=255)
                            ggcgATGCTGGGGCAAATTGGCCTGCCAggtggtg        <  1:12623640/35‑1 (MQ=255)
                            ggcgATGCTGGGGCAAATTGGCCTGCCAggtggtg        <  1:14893868/35‑1 (MQ=255)
                             gcgATGCTGGGGCAAATTGGCCTGCCAggtggtgg       >  1:684347/1‑35 (MQ=255)
                             gcgATGCTGGGGCAAATTGGCCTGCCAggtggtgg       >  1:8135213/1‑35 (MQ=255)
                              cgATGCTGGGTCAAATTGGCCTGCCAggtggtggg      >  1:2304407/1‑34 (MQ=255)
                              cgATGCTGGGGCAAATTGGCCTGCCAggtggtggg      >  1:16739849/1‑34 (MQ=255)
                              cgATGCTGGGGCAAATTGGCCTGCCAggtggtggg      >  1:14845056/1‑34 (MQ=255)
                               gATGCTGGGGCAAATTGGCCTGCCAggtggtgggt     >  1:11862034/1‑33 (MQ=255)
                               gATGCTGGGGCAAATTGGCCTGCCAggtggtgggt     >  1:19223555/1‑33 (MQ=255)
                               gATGCTGGGGCAAATTGGCCTGCCAggtggggggt     >  1:179522/1‑33 (MQ=38)
                               gATGCTGGGGCAAATTGGCCTGCCAgggggtgggt     >  1:20365715/1‑33 (MQ=38)
                               gATGCTGGGGCAAATTGGCCTGCCAGGTGGtggtt     <  1:20153525/35‑1 (MQ=255)
                               gATGCTGGGGCAAATTGGCCTGCCAGGTGGtggtt     <  1:11430458/35‑1 (MQ=255)
                                aTGCTGGGGCAAATTGGCCTGCCAGGTGGtggttt    <  1:2729594/35‑1 (MQ=255)
                                aTGCTGGGGCAAATTGGCCTGCCAGGTGGtggttt    >  1:20420873/1‑35 (MQ=255)
                                aTGCTGGGGCAAATTGGCCTGCCAGGTGGtggttt    <  1:19944272/35‑1 (MQ=255)
                                 tGCTGGGGCAAATTGGCCTGCCAGGTGGtggtttt   <  1:9470318/35‑1 (MQ=255)
                                 tGCTGGGGCAAATTGGCCTGCCAGGTGGtggtttt   >  1:9338524/1‑35 (MQ=255)
                                 tGCTGGGGCAAATTGGCCTGCCAGGTGGtggtttt   <  1:17002118/35‑1 (MQ=255)
                                 tGCTGGGGCAAATTGGCCTGCCAGGTGGtggtttt   >  1:16472585/1‑35 (MQ=255)
                                 tGCTGGGGCAAATTGGCCTGCCAGGTGGtggtttt   >  1:6328751/1‑35 (MQ=255)
                                 tGCTGGGGCAAATTGGCCTGCCAGGTGGtgggttt   >  1:16032050/1‑35 (MQ=255)
                                 tGCTGGGGCAAATTGGCCTGCCAGGTGGtgggttt   >  1:6028025/1‑35 (MQ=255)
                                  GCTGGGGCAAATTGGCCTGCCAGGTGGtggttttg  >  1:6678937‑M1/1‑35 (MQ=255)
                                  GCTGGGGCAAATTGGCCTGCCAGGTGGtgggtttg  <  1:7384009‑M1/35‑1 (MQ=255)
                                  GCTGGGGCAAATTGGCCTGCCAGGTGGtgggtttg  <  1:6972888‑M1/35‑1 (MQ=255)
                                  GCTGGGGCAAATTGGCCTGCCAGGTGGtgggtttg  <  1:10086977‑M1/35‑1 (MQ=255)
                                  |                                  
AGTGGGCGTGGATGATTGTGGTTCTGGCGGCGATGCTGGGGCAAATTGGCCTGCCAGGTGGTGGTTTTG  >  REL606/1076693‑1076761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.