New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 140702 =57 (0.550)10 (0.130) 3/36 NT 18.6% coding (817/1551 nt) cueO multicopper oxidase (laccase)
?REL606 1349560 = 45 (0.580)intergenic (‑152/+216) fabI/ycjD enoyl‑(acyl carrier protein) reductase/hypothetical protein

CCACCAGCACTTCAAAACGCTCGCCCATCAGCACCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/140741‑140702
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcagGGGGGGCGCTTT  >  REL606/1349560‑1349571
                                                    
CCACCAGCACTTCAAAACGCTCGCCCATCAGCACC                   >  1:17494988/1‑35
CCACCAGCACTTCAAAACGCTCGCCCATCAGCACC                   <  1:3854060/35‑1
CCACCAGCACTTCAAAACGCTCGCCCATCAGCACC                   >  1:7744959/1‑35
CCACCAGCACTTCAAAACGCTCGCCCATCAGCACC                   <  1:7113485/35‑1
 CACCAGCACTTCAAAACGCTCGCCCATCAGCACCG                  >  1:20037079/1‑35
 CACCAGCACTTCAAAACGCTCGCCCATCAGCACCG                  <  1:13888356/35‑1
 CACCAGCACTTCAAAACGCTCGCCCATCAGCACCG                  <  1:7005772/35‑1
 CACCAGCACTTCAAAACGCTCGCCCATCAGCACCG                  <  1:10722583/35‑1
 CACCAGCACTTCAAAACGCTCGCCCATCAGCACCG                  <  1:4461461/35‑1
  ACCAGCACTTCAAAACGCTCGCCCATCAGCACCGG                 >  1:11084323/1‑35
  ACCAGCACTTCAAAACGCTCGCCCATCAGCACCGG                 >  1:2695974/1‑35
  ACCAGCACTTCAAAACGCTCGCCCATCAGCACCGG                 <  1:15416851/35‑1
   CCAGCACTTCAAAACGCTCGCCCATCAGCACCGGC                <  1:2791494/35‑1
   CCAGCACTTCAAAACGCTCGCCCATCAGCACCGGC                <  1:6626257/35‑1
   CCAGCACTTCAAAACGCTCGCCCATCAGCACCGGC                <  1:13589616/35‑1
   CCAGCACTTCAAAACGCTCGCCCATCAGCACCGGC                <  1:5852571/35‑1
   CCAGCACTTCAAAACGCTCGCCCATCAGCACCGGC                >  1:14444879/1‑35
    CAGCACTTCAAAACGCTCGCCCATCAGCACCTGCA               >  1:4822484/1‑35
    CAGCACTTCAAAACGCTCGCCCATCAGCACCGGCA               <  1:16566959/35‑1
    CAGCACTTCAAAACGCTCGCCCATCAGCACCGGCA               >  1:10727357/1‑35
    CAGCACTTCAAAACGCTCGCCCATCAGCACCGGCA               >  1:12693410/1‑35
    CAGCACTTCAAAACGCTCGCCCATCAGCACCGGCA               >  1:12299800/1‑35
     AGCACTTTAAAACGCTCGCCCATCAGCACCGGCAG              >  1:9680457/1‑35
     AGCACTTCAAAACGCTCGCCCATCAGCACCGGCAG              <  1:5495352/35‑1
     AGCACTTCAAAACGCTCGCCCATCAGCACCGGCAG              <  1:10711030/35‑1
     AGCACTTCAAAACGCTCGCCCATCAGCACCGGCAG              >  1:6256999/1‑35
     AGCACTTCAAAACGCTCGCCCATCAGCACCGGCAG              >  1:10952812/1‑35
     AGCACTTCAAAACGCTCGCCCATCAGCACCGGCAG              >  1:9133907/1‑35
     AGCACTTCAAAACGCTCGCCCATCAGCACCGGCAG              >  1:785301/1‑35
     AGCACTTCAAAACGCTCGCCCATCAGCACCGGCAG              >  1:8150555/1‑35
      GCACTTCAAAACGCTCGCCCATCAGCACCGGCAGG             >  1:2959269/1‑35
      GCACTTCAAAACGCTCGCCCATCAGCACCGGCAGG             >  1:9850772/1‑35
        ACTTCAAAACGCTCGCCCATCAGCACCGGCAGGGG           >  1:14313660/1‑35
        ACTTCAAAACGCTCGCCCATCAGCACCGGCAGGGG           >  1:14412090/1‑35
        ACTTCAAAACGCTCGCCCATCAGCACCGGCAGGGG           >  1:18493458/1‑35
         CTTCAAAACGCTCGCCCATCAGCACCGGCAGGGGG          >  1:9861377/1‑35
         CTTCAAAACGCTCGCCCATCAGCACCGGCAGGGGG          >  1:4503250/1‑35
         CTTCAAAACGCTCGCCCATCAGCACCGGCAGGGGG          >  1:20161530/1‑35
          TTCAAAACGCTCGCCCATCAGCACCGGCAGGGGGG         >  1:18930136/1‑35
          TTCAAAACGCTCGCCCATCAGCACCGGCAGGGGGG         >  1:10223976/1‑35
           TCAAAACGCTCGCCCATCAGCACCGGCAGGGGGcg        >  1:3262231/1‑33
           TCAAAACGCTCGCCCATCAGCACCGGCAGGGGGGG        >  1:5490678/1‑35
             AAAACGCTCGCCCATCAGCACCGGCAGGGGGGctg      >  1:20277772/1‑32
             AAAACGCTCGCCCATCAGCACCGGCAGGGGGGGgg      >  1:2862721/1‑33
             AAAACGCTCGCCCATCAGCACCGGCAGGGGGGGgg      >  1:12848895/1‑33
             AAAACGCTCGCCCATCAGCACCGGCAGGGGGGGC     >  1:3211972/1‑34
             AAAACGCTCGCCCATCAGCACCGGCAGGGGGGGCG      >  1:2646995/1‑35
             AAAACGCTCGCCCATCAGCACCGGCAGGGGGCGCG      >  1:6676112/1‑35
              AAACGCTCGCCCATCAGCACCGGCAGGGGGGGGGC     >  1:10630125/1‑35
              AAACGCTCGCCCATCAGCACCGGCAGGGGGGGCGC     >  1:6584695/1‑35
               AACGCTCGCCCATCAGCACCGGCAGGGGGGGGGCg    >  1:2353287/1‑34
                 CGCTCGCCCATCAGCACCGGCAGGGGGGGCGCctg  >  1:10197234/1‑32
                                                    
CCACCAGCACTTCAAAACGCTCGCCCATCAGCACCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/140741‑140702
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcagGGGGGGCGCTTT  >  REL606/1349560‑1349571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.