New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2703325 =45 (0.440)9 (0.120) 3/36 NT 16.6% coding (158/1185 nt) ygaX predicted transporter
?REL606 = 4091236 57 (0.740)coding (461/600 nt) yiiQ hypothetical protein

Only 100 of 111 total aligned reads displayed.

TCCCTTTCCGCCAGTTCGGCAGGCTTTATTGTTACCGCCGCGCAATTGGGCTATGCAGCAGGTCTGCTG  >  REL606/2703291‑2703359
                                  |                                  
ccttctgtctcggtgtaataacgtttgtttttccc                                    >  1:80193‑M1/35‑35 (MQ=255)
ccttctgtctcggtgtaataacgtttggttttccc                                    <  1:8689685‑M1/1‑1 (MQ=255)
 cttctgtctcggtgtaataacgtttgtttttcccc                                   <  1:2755148‑M1/2‑1 (MQ=255)
 cccTTTCCGCTAGTTCGGCAGGCTTTATTGTTAcc                                   <  1:20204886/35‑1 (MQ=255)
 cccTTTCCGCCAGTTCGGCAGGCTTTATTGTTAcc                                   <  1:20275056/35‑1 (MQ=255)
 cccTTTCCGCCAGTTCGGCAGGCTTTATTGTTAcc                                   <  1:6008845/35‑1 (MQ=255)
 cccTTTCCGCCAGTTCGGCAGGCTTTATTGTTAcc                                   <  1:12383773/35‑1 (MQ=255)
 cccTTTCCGCCAGTTCGGCAGGCTTTATTGTTAcc                                   <  1:1654692/35‑1 (MQ=255)
 cccTTCCCGCCAGTTCGGCAGGCTTTATTGTTAcc                                   <  1:19140153/35‑1 (MQ=255)
  ttctgtctcggtgtaataacgtttgtttttccccg                                  >  1:15153154‑M1/33‑35 (MQ=255)
  ttctgtctcggtgtaataacgtttgtttttccccg                                  >  1:18177123‑M1/33‑35 (MQ=255)
  ttctgtctcggtgtaataacgtttgtttttccccc                                  <  1:13341760‑M1/3‑2 (MQ=255)
  ccTTTCCGCCAGTTCGGCAGGCTTTTTTGTTAccg                                  >  1:13749541/1‑35 (MQ=255)
  ccTTTCCGCCAGTTCGGCAGGCTTTATTGTTAccg                                  <  1:4961846/35‑1 (MQ=255)
  ccTTTCCGCCAGTTCGGCAGGCTTTATTGTTAccg                                  >  1:18480673/1‑35 (MQ=255)
   cTTTCCGCTAGTTCGGCAGGCTTTATTGTTAccgc                                 <  1:7660253/35‑1 (MQ=255)
   cTTTCCGCCAGTTCGGCAGGCTTTATTGTTAccgc                                 >  1:2443145/1‑35 (MQ=255)
   cTTTCCGCCAGTTCGGCAGGCTTTATTGTTAccgc                                 >  1:4820085/1‑35 (MQ=255)
   cTTCCCGCCAGTTCGGCAGGCTTTATTGTTAccgc                                 <  1:19840804/35‑1 (MQ=255)
   cTTCCCGCCAGTTCGGCAGGCTTTATTGTTAccgc                                 <  1:3444595/35‑1 (MQ=255)
    ctgtctcggtgtaataacgtttgtttttccccgcc                                >  1:2862860‑M1/31‑35 (MQ=255)
     ttCCGCCAGTTCGGCAGGCTTTATTGTTAccgccg                               >  1:15311654/1‑35 (MQ=255)
     ttCCGCCAGTTCGGCAGGCTTTATTGTTAccgccg                               >  1:3589831/1‑35 (MQ=255)
     tgtctcggtgtaataacgtttgtttttccccgccg                               >  1:8294369‑M1/30‑35 (MQ=255)
      tCCGCCAGTTCGGCAGGCTTTATTTTTACcgccgc                              >  1:18437239/1‑35 (MQ=255)
         gCCAGTTCGGCAGGCTTTATTGTTACCGCCGCGCa                           >  1:13822120/1‑35 (MQ=255)
          ccAGTTCGGCAGGCTTTATTGTTACCGCCGCGCaa                          >  1:18198961/1‑35 (MQ=255)
           cAGTTCGGCAGGCTTTATTGTTACCGCCGCGCAAt                         >  1:1121964/1‑35 (MQ=255)
            aGTTCGGCAGGCTTTATTGTTACCGCCGCGCAAtt                        >  1:329521/1‑35 (MQ=255)
               tCGGCAGGCTTTATTGTTACCGCCGCGCAATTggg                     >  1:9840547/1‑35 (MQ=255)
                cGGCAGGCTTTATTGTTACCGCCGCGCAATTGGGc                    >  1:7135662/1‑35 (MQ=255)
                 ggCAGGCTTTATTGTTACCGCCGCGCCATTGGGCt                   >  1:12037780/1‑35 (MQ=255)
                 ggCAGGCTTTATTGTTACCGCCGCGCAATTGGGCt                   >  1:6951140/1‑35 (MQ=255)
                 ggCAGGCTTTATTGTTACCGCCGCGCAATTGGGCt                   >  1:10006401/1‑35 (MQ=255)
                   cAGGCTTTATTGTTACCGCCGCGCAATTGTGCTAt                 >  1:18162588/1‑35 (MQ=255)
                   cAGGCTTTATTGTTACCGCCGCGCAATTGGGCTAt                 >  1:3917416/1‑35 (MQ=255)
                   cAGGCTTTATTGTTACCGCCGCGCAATTGGGCTAt                 >  1:5449103/1‑35 (MQ=255)
                   cAGGCTTTATTGTTACCGCCGCGCAATTGGGCTAt                 >  1:11296308/1‑35 (MQ=255)
                   cAGGCTTTATTGTTACCGCCGCGCAATTGGGCTAt                 >  1:8199671/1‑35 (MQ=255)
                   cAGGCTTTATTGTTACCGCCGCGCAATTGGGCTAt                 >  1:8763258/1‑35 (MQ=255)
                    aGGCTTTATTGTTACCGCCGCGCAATTGGGCTATg                >  1:9967502/1‑35 (MQ=255)
                    aGGCTTTATTGTTACCGCCGCGCAATTGGGCTATg                >  1:10501951/1‑35 (MQ=255)
                    aGGCTTTATTGTTAACGCCGCGCAATTGGGCTATg                <  1:16715591/35‑1 (MQ=255)
                     ggCTTTATTTTCCCCGCCGCGCAATTGGGCTATgc               <  1:17675196/35‑1 (MQ=21)
                     ggCTTTATTGTTGCCGACGCGCAATTGGGCTATgc               <  1:10058120/35‑1 (MQ=37)
                     ggCTTTATTGTTACCGCCGCGCAATTGGGCTATgc               >  1:18436218/1‑35 (MQ=255)
                     ggCTTTATTGTTACCGCCGCGCAATTGGGCTATgc               >  1:15934658/1‑35 (MQ=255)
                     ggCTTTATTGTCCCCGCCGCGCAATTGGGCTATgc               <  1:18009949/35‑1 (MQ=37)
                     gcttttATGGTGCCCGCCGCGCAATTGGGCTATgc               <  1:11156742/32‑1 (MQ=16)
                      ttttttttttccCCGCCGCGCAATTGGGCTATgca              >  1:1472507‑M1/13‑35 (MQ=255)
                      tttttATTTTCCCCGCCGCGCAATTGGGCTATgca              <  1:7786159/33‑1 (MQ=21)
                      gtttttttttccCCGCCGCGCAATTGGGCTATgca              >  1:2861662‑M1/13‑35 (MQ=255)
                      gCTTTATTGTTACCGCCGCGCAATTGGGCTATtca              >  1:1893701/1‑35 (MQ=255)
                       ttttATTGTTCCCGCCGCGCAATTGGGCTATgcag             <  1:3407527/34‑1 (MQ=255)
                       ttttATTGTCCCCGCCGCGCAATTGGGCTATgcag             <  1:17554467/34‑1 (MQ=37)
                       cTTTATTGTTACCGCCGCGCAATTGGGCTATgcag             >  1:16327350/1‑35 (MQ=255)
                       cTTTATTGTTACCGCCGCGCAATTGGGCTATgcag             >  1:12561455/1‑35 (MQ=255)
                       cTTTATTGTTACCGCAGCGCAATTGGGCTATgcag             <  1:1240783/35‑1 (MQ=255)
                       cTTTATTGTCCCCGCCGCGCAATTGGGCTATgcag             <  1:3148934/35‑1 (MQ=37)
                        tttTTTGTCCCCGCCGCGCAATTGGGCTATgcagc            <  1:10144851/35‑1 (MQ=25)
                        tttATTGTTCCCGCCGCGCAATTGGGCTATgcagc            <  1:4659492/35‑1 (MQ=255)
                        tttATTGTCCCCGCCGCGCAATTGGGCTATgcagc            <  1:19511208/35‑1 (MQ=37)
                         tttttttccCCGCCGCGCAATTGGGCTATgcagca           >  1:4480879‑M1/10‑35 (MQ=255)
                         ttATTGTTACCGCCGCGCAATTGGGCTATgcagca           >  1:18932102/1‑35 (MQ=255)
                         ttATTGTTACCGCCGCGCAATTGGGCTATgcagca           >  1:15635882/1‑35 (MQ=255)
                         ttATTGTTACCGCCGCGCAATTGGGCTATgcagca           >  1:16239103/1‑35 (MQ=255)
                         ttATTGTTACCGCCGCGCAATTGAGCTATgcagca           >  1:20454238/1‑35 (MQ=255)
                          ttttgtccCCGCCGCGCAATTGGGCTATGcagcag          >  1:14116283‑M1/9‑35 (MQ=255)
                           tttttccCCGCCGCGCAATTGGGCTATGCAGCAgg         >  1:8486668‑M1/8‑35 (MQ=255)
                           tttctccCCGCCGCGCAATTGGGCTATGCAGCAgg         >  1:16149385‑M1/8‑35 (MQ=255)
                           attgtccCCGCCGCGCAATTGGGCTATGCAGCAgg         >  1:12443344‑M1/8‑35 (MQ=255)
                            ttgtccCCGCCGCGCAATTGGGCTATGCAGCAGGt        >  1:6527301‑M1/7‑35 (MQ=255)
                            ttctccCCGCCGCGCAATTGGGCTATGCAGCAGGt        >  1:10589290‑M1/7‑35 (MQ=255)
                            ttGTTACCGCCGCGCAATTGGGCTATGCAGCAGGt        >  1:4377549/1‑35 (MQ=255)
                            ttGTTACCGCCGCGCAATTGGGCTATGCAGCAGGt        >  1:19312073/1‑35 (MQ=255)
                             tttccCCGCCGCGCAATTGGGCTATGCAGCAGGTc       >  1:6892417‑M1/6‑35 (MQ=255)
                             ttcccCCGCCGCGCAATTGGGCTATGCAGCAGGTc       >  1:18843696‑M1/6‑35 (MQ=255)
                             tGTTACCGCCGCGCAATTGGGCTATGCAGCAGGTc       >  1:11912217/1‑35 (MQ=255)
                              ttccCCGCCGCGCAATTGGGCTATGCAGCAGGTct      >  1:19042449‑M1/5‑35 (MQ=255)
                              ttccCCGCCGCGCAATTGGGCTATGCAGCAGGTct      >  1:9107740‑M1/5‑35 (MQ=255)
                              gtccCCGCCGCGCAATTGGGCTATGCAGCAGGTct      >  1:11067706‑M1/5‑35 (MQ=255)
                              gTTACCGCCGCGCAATTGGGCTATGCAGCAGGTct      >  1:15547904/1‑35 (MQ=255)
                              ctgcCCGCCGCGCAATTGGGCTATGCAGCAGGTct      >  1:7675640‑M1/5‑35 (MQ=255)
                              ctccCCGCCGCGCAATTGGGCTATGCAGCAGGTct      >  1:417878‑M1/5‑35 (MQ=255)
                               ttACCGCCGCGCAATTGGGCTATGCAGCAGGTctg     >  1:14901110/1‑35 (MQ=255)
                               tccCCGCCGCGCAATTGGGCTATGCAGCAGGTctg     >  1:18907095‑M1/4‑35 (MQ=255)
                               tcaCCGCCGCGCAATTGGGCTATGCAGCAGGTctg     <  1:15306932/33‑1 (MQ=255)
                               cccCCGCCGCGCAATTGGGCTATGCAGCAGGTctg     >  1:5827710‑M1/4‑35 (MQ=255)
                                ccCCGCCGCGCAATTGGGCTATGCAGCAGGTctgc    >  1:14896042‑M1/3‑35 (MQ=255)
                                 cCCGCCGCGCAATTGGGCTATGCAGCAGGTctgct   >  1:7457816‑M1/2‑35 (MQ=255)
                                 cCCGCCGCGCAATTGGGCTATGCAGCAGGTctgct   >  1:11415634‑M1/2‑35 (MQ=255)
                                 cCCGCCGCGCAATTGGGCTATGCAGCAGGTctgct   >  1:3575016‑M1/2‑35 (MQ=255)
                                 cCCGCCGCGCAATTGGGCTATGCAGCAGGTctgct   >  1:15341698‑M1/2‑35 (MQ=255)
                                 aCCGCCGCGCAATTGGGCTATGCAGCAGGTctgct   >  1:3866832/1‑35 (MQ=255)
                                 aCCGCCGCGCAATTGGGCTATGCAGCAGGTctgct   >  1:8627985/1‑35 (MQ=255)
                                  CCGCCGCGCAATTGGGCTATGCAGCAGGTctgctg  <  1:16328165‑M1/35‑1 (MQ=255)
                                  CCGCCGCGCAATTGGGCTATGCAGCAGGTctgctg  >  1:8379071‑M1/1‑35 (MQ=255)
                                  CCGCCGCGCAATTGGGCTATGCAGCAGGTctgctg  >  1:12044465‑M1/1‑35 (MQ=255)
                                  CCGCCGCGCAATTGGGCTATGCAGCAGGTctgctg  >  1:19537623‑M1/1‑35 (MQ=255)
                                  CCGCCGCGCAATTGGGCTATGCAGCAGGTctgctg  >  1:5422512‑M1/1‑35 (MQ=255)
                                  |                                  
TCCCTTTCCGCCAGTTCGGCAGGCTTTATTGTTACCGCCGCGCAATTGGGCTATGCAGCAGGTCTGCTG  >  REL606/2703291‑2703359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.