New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2389861 =74 (0.720)12 (0.150) 5/38 NT 19.1% coding (116/825 nt) mepA penicillin‑insensitive murein endopeptidase
?REL606 = 2877079 43 (0.530)intergenic (‑276/+39) araE/kduD arabinose transporter/2‑deoxy‑D‑gluconate 3‑dehydrogenase

Only 100 of 101 total aligned reads displayed.

TATGGATTATGATGATCTACAGATATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAA  >  REL606/2877046‑2877113
                                 |                                  
tatGGATTATGATGATCTACAGATATAAAAAACCc                                   <  1:11014321‑M2/35‑2 (MQ=255)
 atGGATTATGATGATCTACAGATATAAAAAACCct                                  <  1:14612537‑M2/35‑3 (MQ=255)
 atGGATTATGATGATCTACAGATATAAAAAACCct                                  <  1:13161518‑M2/35‑3 (MQ=255)
 atGGATTATGATGATCTACAGATATAAAAAACCct                                  <  1:3532442‑M2/35‑3 (MQ=255)
 atGGATTATGATGATCTACAGATATAAAAAACCct                                  >  1:8292859‑M2/1‑33 (MQ=255)
   ggATTATGATGATCTACAGATATAAAAAACCctgc                                >  1:16550907‑M2/1‑31 (MQ=255)
   ggATTATGATGATCTACAGATATAAAAAACCctgc                                <  1:12556240‑M2/35‑5 (MQ=255)
   ggATTATGATGATCTACAGATATAAAAAACCctgc                                <  1:9650920‑M2/35‑5 (MQ=255)
    gATTATGATGATCTACAGATATAAAAAACCctgcc                               <  1:15567116‑M2/35‑6 (MQ=255)
    gATTATGATGATCTACAGATATAAAAAACCctgcc                               <  1:11538025‑M2/35‑6 (MQ=255)
     aTTATGATGATCTACAGATATAAAAAACCCTGCCa                              >  1:3720023/1‑35 (MQ=255)
     aTTATGATGATCTACAGATATAAAAAACCCTGCCa                              <  1:8998249/35‑1 (MQ=255)
      ttATGATGATCTACAGATATAAAAAACCCTGCCAt                             >  1:5878994/1‑35 (MQ=255)
       tATGATGATCTACAGATATAAAAAACCCTGCCATg                            >  1:11995942/1‑35 (MQ=255)
       tATGATGATCTACAGATATAAAAAACCCTGCCATg                            >  1:8711319/1‑35 (MQ=255)
       tATGATGATCTACAGATATAAAAAACCCTGCCATg                            >  1:19941936/1‑35 (MQ=255)
        atgatgATCTACAGATATAAAAAACCCTGCCATGc                           <  1:8589877/35‑1 (MQ=255)
        atgatgATCTACAGATATAAAAAACCCTGCCATGc                           <  1:3479878/35‑1 (MQ=255)
        atgatgATCTACAGATATAAAAAACCCTGCCATGc                           >  1:15457030/1‑35 (MQ=255)
         tgatgaTCTACAGATATAAAAAACCCTGCCATGCg                          >  1:10014848/1‑35 (MQ=255)
          gatgatCTCCAGATATAAAAACCCCTGCCATGCgg                         <  1:7931403/35‑1 (MQ=37)
           atgatCTACAGATATAAAAAACCCTTCCATGCGGc                        >  1:12174897/1‑35 (MQ=255)
           atgatCTACAGATATAAAAAACCCTGCCATGCGGc                        >  1:4071292/1‑35 (MQ=255)
           atgatCTACAGATATAAAAAACCCTGCCATGCGGc                        <  1:20073907/35‑1 (MQ=255)
           atgatCTACAGATATAAAAAACCCTGCCATGCGGc                        >  1:15644445/1‑35 (MQ=255)
           atgatCTACAGATATAAAAAACCCTGCCATGCGGc                        >  1:3079940/1‑35 (MQ=255)
           agtatCTACAGATATAAAAAACCCTGCCATGCGGc                        <  1:19585038/32‑1 (MQ=255)
            tgatCTACAGATATAAAAAACCCTGCCATGCGGCa                       >  1:10247476/1‑35 (MQ=255)
             gatCTACATATATAAAAAACCCTGCCATGCGGCAg                      >  1:5062825/1‑35 (MQ=255)
             gatCTACAGATATAAAAAACCCTGCCATGCGGCAg                      >  1:15009838/1‑35 (MQ=255)
             gatCTACAGATATAAAAAACCCTGCCATGCGGCAg                      >  1:16931101/1‑35 (MQ=255)
             gatCTACAGATATAAAAAACCCTGCCATGCGGCAg                      >  1:12580465/1‑35 (MQ=255)
              atCTACAGATATAAAAAACCCTGCCATGCGGCAgg                     <  1:19034052/35‑1 (MQ=255)
              atCTACAGATATAAAAAACCCTGCCATGCGGCAgg                     >  1:17328178/1‑35 (MQ=255)
               tCTACAGATATAAAAAACCCTGCCATGCGGCAggg                    >  1:1391464/1‑35 (MQ=255)
               tCTACAGATATAAAAAACCCTGCCATGCGGCAggg                    >  1:16916780/1‑35 (MQ=255)
                 tACAGATATAAAAAACCCTGCCATGCGGCAGGGTc                  <  1:1485056/35‑1 (MQ=255)
                  aCAGATATAAAAAACCCTGCCATGCGGCAGGGTCa                 >  1:10614857/1‑35 (MQ=255)
                  aCAGATATAAAAAACCCTGCCATGCGGCAGGGTCa                 >  1:910683/1‑35 (MQ=255)
                  aCAGATATAAAAAACCCTGCCATGCGGCAGGGGCa                 >  1:10664473/1‑35 (MQ=255)
                   cAGATATAAAAACCCCTGCCATGCGGCAGGGTCAt                <  1:5436132/35‑1 (MQ=255)
                   cAGATATAAAAAACCCTGCCATGCGGCAGGGTCAt                >  1:3344221/1‑35 (MQ=255)
                   cAGATATAAAAAACCCTGCCATGCGGCAGGGTCAt                >  1:6946966/1‑35 (MQ=255)
                   cAGATATAAAAAACCCTGCCATGCGGCAGGGTCAt                >  1:4512509/1‑35 (MQ=255)
                    aGATATAAAAAACCCTGCCATGCGGCAGGGTCATa               <  1:63100/35‑1 (MQ=255)
                     gATATAAAAACCCCTGCCATGCGGCAGGGTCATaa              <  1:17962954/35‑1 (MQ=255)
                     gATATAAAAAACCCTGCCATGCGGCAGGGTCATaa              >  1:11007801/1‑35 (MQ=255)
                      ccataaaAAACCctgcctatcgattgtgcgctacc             >  1:16829145‑M2/3‑12 (MQ=255)
                      atatAAAAAACCCTGCCATGCGGCAGGGTCATaaa             >  1:18718631/1‑35 (MQ=255)
                      atatAAAAAACCCTGCCATGCGGCAGGGTCATaaa             >  1:7523421/1‑35 (MQ=255)
                      atatAAAAAACCCTGCCATGCGGCAGGGTCATaaa             >  1:16539720/1‑35 (MQ=255)
                      atatAAAAAACCCTGCCATGCGGCAGGGTCATaaa             >  1:8942013/1‑35 (MQ=255)
                      atatAAAAAACCCTGCCATGCGGCAGGGGCATaaa             >  1:2053815/1‑35 (MQ=255)
                       cataaAAAAACctgcctatcgattgtgcgctaccc            >  1:10160833‑M2/2‑11 (MQ=255)
                       aaaaaaaaaccctgcctatcgattgtgcgctaccc            >  1:6828270‑M2/4‑11 (MQ=255)
                        ataAGAAACCctgcctatcgattgtgcgctacccg           >  1:18057451‑M2/1‑10 (MQ=255)
                        ataAAAAACCCTTCCATGCGGCAGGGGCATAAAAg           >  1:15668798/1‑35 (MQ=38)
                         taAAAACCCCTGCCATGCGGCAGGGTCATAAAAGt          <  1:9674141/35‑1 (MQ=255)
                         taAAAAACCctgcctatcgattgtgcgctacccgg          >  1:4856770‑M2/1‑9 (MQ=255)
                         taAAAAACCCTGCCATGCGGCAGGGTCATAAAAGt          >  1:5313035/1‑35 (MQ=255)
                          aaaaacCCCTGCCATGCGGCAGGGTCATAAAAGTa         <  1:20352918/35‑1 (MQ=255)
                          aaaaaaCCctgcctatcgattgtgcgctacccggc         >  1:2873065‑M2/1‑8 (MQ=255)
                          aaaaaaCCctgcctatcgattgtgcgctacccggc         >  1:16799864‑M2/1‑8 (MQ=255)
                          aaaaaaCCctgcctatcgattgtgcgctacccggc         >  1:7478569‑M2/1‑8 (MQ=255)
                          aaaaaaCCCTGCCATGCGGCAGGGTCATAAAAGTa         >  1:1124885/1‑35 (MQ=255)
                          aaaaaaCCCTGCCATGCGGCAGGGTCATAAAAGTa         >  1:5643887/1‑35 (MQ=255)
                          aaaaaaCCCTGCCATGCGGCAGGGTCATAAAAGTa         <  1:12446408/35‑1 (MQ=255)
                           aaaaaCCctgcctatcgattgtgcgctacccggca        >  1:9423415‑M2/1‑7 (MQ=255)
                           aaaaaCCCTGCCATGCGGCAGGGTCATAAAAGTaa        >  1:8067708/1‑35 (MQ=255)
                           aaaaaCCCTGCCATGCGGCAGGGTCATAAAAGTaa        >  1:8262352/1‑35 (MQ=255)
                           aaaaaACctgcctatcgattgtgcgctacccggca        >  1:6613920‑M2/1‑7 (MQ=255)
                            aacaCCCTGCCATGCGGCAGGGTCATAAAAGTaag       <  1:19813990/32‑1 (MQ=255)
                            aaaaCCctgcctatcgattgtgcgctacccggcac       >  1:1201122‑M2/1‑6 (MQ=255)
                            aaaaCCctgcctatcgattgtgcgctacccggcac       >  1:15037798‑M2/1‑6 (MQ=255)
                            aaaaCCCTGCCATGCGGCAGGGTCATAAAAGTaag       >  1:758155/1‑35 (MQ=255)
                             aaaCCctgcctatcgattgtgcgctacccggcaca      >  1:713771‑M2/1‑5 (MQ=255)
                             aaaCCctgcctatcgattgtgcgctacccggcaca      >  1:3633388‑M2/1‑5 (MQ=255)
                             aaaCCctgcctatcgattgtgcgctacccggcaca      >  1:11098547‑M2/1‑5 (MQ=255)
                             aaaCCCTGCCATGCGGCAGGGTCATAAAAGTaaga      >  1:14369743/1‑35 (MQ=255)
                              aaCCctgcctatcgattgtgcgctacccggcacag     >  1:1181966‑M2/1‑4 (MQ=255)
                              aaCCctgcctatcgattgtgcgctacccggcacag     >  1:288221‑M2/1‑4 (MQ=255)
                              aaCCctgcctatcgattgtgcgctacccggcacag     >  1:4869064‑M2/1‑4 (MQ=255)
                              aaCCctgcctatcgattgtgcgctacccggcacag     >  1:18615384‑M2/1‑4 (MQ=255)
                              aaCCCTGCCATGCGGCAGGGTCATAAAAGTaagaa     >  1:5316808/1‑35 (MQ=255)
                              aaCCCTGCCATGCGGCAGGGTCATAAAAGTaagaa     >  1:13619286/1‑35 (MQ=255)
                              aaCCCTGCCATGCGGCAGGGTCATAAAAGTaagaa     >  1:12944449/1‑35 (MQ=255)
                              aaACctgcctatcgattgtgcgctacccggcacag     >  1:8843388‑M2/1‑4 (MQ=255)
                               aCCctgcctatcgattgtgcgctacccggcacagg    >  1:18780219‑M2/1‑3 (MQ=255)
                               aCCCTGCCATGCGGCAGGGTCATAAAAGTaagaag    <  1:9109542/35‑1 (MQ=255)
                               aCCCTGCCATGCGGCAGGGTCATAAAAGTaagaag    >  1:4890434/1‑35 (MQ=255)
                               aCCCTGCCATGCGGCAGGGTCATAAAAGTaagaag    >  1:11553332/1‑35 (MQ=255)
                                ccctgcctatcgattgtgcgctacccggcacaggt   >  1:16658529‑M2/1‑2 (MQ=255)
                                ccctgcctatcgattgtgagctacccggcacaggt   >  1:4394880‑M2/1‑2 (MQ=255)
                                cccTGCCATGCGGCAGGGTCATAAAAGTAagaaga   >  1:11449833/1‑35 (MQ=255)
                                acctgcctatcgattgtgcgctacccggcacaggt   >  1:2508952‑M2/2‑2 (MQ=255)
                                 cctgcctatcgattgtgcgctacccggcacaggtt  >  1:16951609‑M2/1‑1 (MQ=255)
                                 ccTGCCNTGCGGCAGGGGCATAAAAGTAAgaagaa  >  1:10081363/1‑35 (MQ=255)
                                 ccTGCCATGCGGCAGGGTCATAAAAGTAAgaagaa  >  1:6669431/1‑35 (MQ=255)
                                 ccTGCCATGCGGCAGGGTCATAAAAGTAAgaagaa  >  1:15249530/1‑35 (MQ=255)
                                 ccTGCCATGCGGCAGGGGCATAAAAGTAAgaagaa  >  1:20437631/1‑35 (MQ=255)
                                 |                                  
TATGGATTATGATGATCTACAGATATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAA  >  REL606/2877046‑2877113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.