New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1183967 | 102 (0.990) | 18 (0.180) | 7/48 | NT | 19.3% | intergenic (+43/+40) | ycfR/ycfS | hypothetical protein/hypothetical protein |
? | REL606 | = 3012564 | 49 (0.480) | coding (248/1020 nt) | ECB_02814 | conserved hypothetical protein |
Only 100 of 112 total aligned reads displayed.
ATTCTTTCAGGAATGGGTAAATCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCTGGCCTCTACGGGT > REL606/3012530‑3012598 | aTTCTTTCAGGAATGGGTAAATCAGGGCATgtcgg < 1:18429874/35‑1 (MQ=255) aTTCTTTCAGGAATGGGTAAATCAGGGCATgtcgg > 1:6384554/1‑35 (MQ=255) aTTCTTTCAGGAATGGGTAAATCAGGGCATgtcgg > 1:17420415/1‑35 (MQ=255) aTTCTTTCAGGAATGGGTAAATCAGGGCATgtcgg < 1:1173635/35‑1 (MQ=255) aTTCTTTCAGGAATGGGTAAATCAGGGCATgtcgg > 1:17587667/1‑35 (MQ=255) aTTCTTTCAGGAATGGGTAAATCAGGGCATgtcgg < 1:9186507/35‑1 (MQ=255) ttCTTTCAGGAATGGGTAAATCAGGGCATgtcggt < 1:16088274/35‑1 (MQ=255) ttCTTTCAGGAATGGGTAAATCAGGGCATgtcggt < 1:14245202/35‑1 (MQ=255) ttCTTTCAGGAATGGGTAAATCAGGGCATgtcggt < 1:4615365/35‑1 (MQ=255) ttCTTTCAGGAATGGGTAAATCAGGGCATGTCGGg < 1:18680286‑M2/35‑2 (MQ=255) tCTTTCAGGAATGGGTAAATCAGGGCATgtcggtc < 1:19272391/35‑1 (MQ=255) tCTTTCAGGAATGGGTAAATCAGGGCATgtcggtc < 1:10871191/35‑1 (MQ=255) tCTTTCAGGAATGGGTAAATCAGGGCATGTCGGgg < 1:1125036‑M2/35‑3 (MQ=255) cTTTCAGGAATGGGTAAATCAGGGCATgtcggtcg < 1:10941492/35‑1 (MQ=255) cTTTCAGGAATGGGTAAATCAGGGCATgtcggtcg < 1:13194860/35‑1 (MQ=255) tttCAGGAATGGGTAAATCAGGGCATGTCGGTCGt < 1:18890248/35‑1 (MQ=255) tttCAGGAATGGGTAAATCAGGGCATGTCGGTCGt < 1:12621644/35‑1 (MQ=255) tttCAGGAATGGGTAAATCAGGGCATGTCGGTCGt < 1:4903102/35‑1 (MQ=255) ttCAGGAATGGGTAAATCAGGGCATGTCGGggggg < 1:14659518‑M2/35‑6 (MQ=255) ttCAGGAATGGGTAAATCAGGGCATGTCGGggggg < 1:8579810‑M2/35‑6 (MQ=255) ttCAGGAATGGGTAAATCAGGGCATGTCGGTCGTa < 1:16077672/35‑1 (MQ=255) ttCAGGAATGGGTAAATCAGGGCATGTCGGTCGTa < 1:7876778/35‑1 (MQ=255) tCAGGAATGGGTAAATCAGGGCATGTCGGgggggg < 1:5796092‑M2/35‑7 (MQ=255) tCAGGAATGGGTAAATCAGGGCATGTCGGggggca < 1:13754556‑M2/35‑7 (MQ=255) tCAGGAATGGGTAAATCAGGGCATGTCGGggggaa < 1:17009617‑M2/35‑7 (MQ=255) tCAGGAATGGGTAAATCAGGGCATGTCGGTCGTaa < 1:2339907/35‑1 (MQ=255) ctaGGAATGGGTAAATCAGGGCATGTCGGTCGTaa < 1:7452965/33‑1 (MQ=255) cAGGAATGGGTAAATCAGGGCATGTCGGgggtaaa < 1:15240856‑M2/35‑8 (MQ=255) cAGGAATGGGTAAATCAGGGCATGTCGGgggggaa < 1:13560055‑M2/35‑8 (MQ=255) cAGGAATGGGTAAATCAGGGCATGTCGGTCGTaaa < 1:12196838/35‑1 (MQ=255) aGGAATGGGTAAATCAGGGCATGTCGGgggggaaa < 1:13313666‑M2/35‑9 (MQ=255) aGGAATGGGTAAATCAGGGCATGTCGGggggaaaa < 1:9118992‑M2/35‑9 (MQ=255) aGGAATGGGTAAATCAGGGCATGTCGGTCGTaaaa < 1:11478515/35‑1 (MQ=255) aGGAATGGGTAAATCAGGGCATGTCGGTCGTaaaa < 1:14578117/35‑1 (MQ=255) aGGAATGGGTAAATCAGGGCATGTCGGTCGTaaaa < 1:19976233/35‑1 (MQ=255) ggAATGGGTAAATCAGGGCATGTCGGgggggaaaa < 1:15009878‑M2/35‑10 (MQ=255) ggAATGGGTAAATCAGGGCATGTCGGgggggaaaa < 1:9064727‑M2/35‑10 (MQ=255) ggAATGGGTAAATCAGGGCATGTCGGTCGTAAAAt < 1:7690587/35‑1 (MQ=255) ggAATGGGTAAATCAGGGCATGTCGGTCGTAAAAt < 1:6176816/35‑1 (MQ=255) ggAATGGGTAAATCAGGGCATGTCGGTCGTAAAAt < 1:9546388/35‑1 (MQ=255) gAATGGGTAAATCAGGGCATGTCGGgggggaaaag < 1:17640164‑M2/35‑11 (MQ=255) gAATGGGTAAATCAGGGCATGTCGGgggggaaaaa < 1:15703514‑M2/35‑11 (MQ=255) gAATGGGTAAATCAGGGCATGTCGGgggggaaaaa < 1:19795009‑M2/35‑11 (MQ=255) gAATGGGTAAATCAGGGCATGTCGGgggggaaaaa < 1:14609295‑M2/35‑11 (MQ=255) gAATGGGTAAATCAGGGCATGTCGGgggggaaaaa < 1:7897060‑M2/35‑11 (MQ=255) gAATGGGTAAATCAGGGCATGTCGGgggggaaaaa < 1:9661755‑M2/35‑11 (MQ=255) gAATGGGTAAATCAGGGCATGTCGGggggaaaaat < 1:17617533‑M2/35‑11 (MQ=255) aaTGGGTAAATCAGGGCATGTCGGgggggaaaaat < 1:18387730‑M2/35‑12 (MQ=255) aaTGGGTAAATCAGGGCATGTCGGgggggaaaaat < 1:12583644‑M2/35‑12 (MQ=255) aaTGGGTAAATCAGGGCATGTCGGgggggaaaaag < 1:6435111‑M2/35‑12 (MQ=255) aTGTGTAAATCAGGGCATGTCGGTGCTAAAAAGTc > 1:11991044/1‑35 (MQ=19) aTGGGTAAATCAGGGCATGTCGGggggaaaaaaac < 1:5976034‑M2/35‑13 (MQ=255) aTGGGTAAATCAGGGCATGTCGGTCGTAAAATGTc < 1:2833804/35‑1 (MQ=255) aTGGGTAAATCAGGGCATGTCGGTCGTAAAATGTc < 1:4308989/35‑1 (MQ=255) aTGGGTAAATCAGGGCATGTCGGTCGTAAAATGTc < 1:13840841/35‑1 (MQ=255) aTGGGTAAATCAGGGCATGTCGGGCGTAAAAtatt > 1:20448259/1‑32 (MQ=37) tGGGTAAATCAGGGCATGTCGGTCGTAAAATGTCa < 1:12138433/35‑1 (MQ=255) tGGGTAAATCAGGGCATGTCGGTCGTAAAATGTCa < 1:18069950/35‑1 (MQ=255) gggTAAATCAGGGCATGTCGGTCGTAAAATGTCAg < 1:18462730/35‑1 (MQ=255) ggTAAATCAGGGCATGTCGGTCGTAAAATGTCAGc < 1:15480691/35‑1 (MQ=255) ggTAAATCAGGGCATGTCGGTCGTAAAATGTCAGc < 1:6083861/35‑1 (MQ=255) ggTAAATCAGGGCATGTCGGTCGTAAAATGTCAGc < 1:3186087/35‑1 (MQ=255) gatAAATCAGGGCATGTCGGTCGTAAAATGTCAGc < 1:8399633/33‑1 (MQ=255) gTAAATCAGGGCATGTCGGTCGTAAAATGTCAGCg < 1:19671091/35‑1 (MQ=255) tAAATCAGGGCATGTCGGTCGTAAAATGTCAGCGa < 1:14724169/35‑1 (MQ=255) aaaTCAGGGCATGTCGGTCGTAAAATGTCAGCGAc < 1:12522403/35‑1 (MQ=255) aaaTCAGGGCATGTCGGTCGTAAAATGTCAGCGAc < 1:421219/35‑1 (MQ=255) aaaTCAGGGCATGTCGGTCGTAAAATGTCAGCGAc < 1:1724733/35‑1 (MQ=255) aaaTCAGGGCATGTCGGTCGTAAAATGTCAGCGAc < 1:16879953/35‑1 (MQ=255) tCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCt < 1:4172094/35‑1 (MQ=255) tCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCt < 1:2329311/35‑1 (MQ=255) tCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCt < 1:1422369/35‑1 (MQ=255) tCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCt < 1:10248912/35‑1 (MQ=255) tCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCt < 1:2043635/35‑1 (MQ=255) tCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCt < 1:19425854/35‑1 (MQ=255) cAGGGCATGTCGGTCGTAAAATGTCAGCGACGCTg < 1:3545159/35‑1 (MQ=255) cAGGGCATGTCGGTCGTAAAATGTCAGCGACGCTg < 1:11293608/35‑1 (MQ=255) cAGGGCATGTCGGTCGTAAAATGTCAGCGACGCTg < 1:6723386/35‑1 (MQ=255) aGGGCATGTCGGTCGTAAAATGTCAGCGACGCTgg < 1:2114136/35‑1 (MQ=255) gggCATGTCGGTCGTAAAATGTCAGCGACGCTGGc < 1:8268767/35‑1 (MQ=255) gggCATGTCGGTCGTAAAATGTCAGCGACGCTGGc < 1:20564397/35‑1 (MQ=255) gggCATGTCGGTCGTAAAATGTCAGCGACGCTGGc < 1:9097661/35‑1 (MQ=255) ggCATGTCGGTCGTAAAATGTCAGCGACGCTGGcc < 1:16705644/35‑1 (MQ=255) gCATGTCGGTCGTAAAATGTCAGCGACGCTGGCct < 1:14407048/35‑1 (MQ=255) ctaTGTCGGTCGTAAAATGTCAGCGACGCTGGCct < 1:10041623/33‑1 (MQ=255) cATGTCGGTCGTAAAATGTCAGCGACGCTGGCctc < 1:9372688/35‑1 (MQ=255) gtcggtcgTAAAATGTCAGCGACGCTGGCCTCTAc < 1:13794316/35‑1 (MQ=255) tcggtcgTAAAATGTCAGCGACGCTGGCCTCTACg < 1:15583045/35‑1 (MQ=255) tcggtcgTAAAATGTCAGCGACGCTGGCCTCTACg < 1:12408508/35‑1 (MQ=255) tcggtcgTAAAATGTCAGCGACGCTGGCCTCTACg < 1:13674152/35‑1 (MQ=255) tcggtcgTAAAATGTCAGCGACGCTGGCCTCTACg < 1:9524109/35‑1 (MQ=255) cggtcgTAAAATGTCAGCGACGCTGGCCTCTACgg < 1:13834412/35‑1 (MQ=255) cggtcgTAAAATGTCAGCGACGCTGGCCTCTACgg < 1:3838209/35‑1 (MQ=255) ggtcgTAAAATGTCAGCGACGCTGGCCTCTACggg < 1:5700103/35‑1 (MQ=255) gtcgTAAAATGTCAGCGCCGCTGGCCTCTACGGGt < 1:8248224/35‑1 (MQ=255) gtcgTAAAATGTCAGCGACGCTGGCCTCTACgggg > 1:15282064/1‑34 (MQ=255) gtcgTAAAATGTCAGCGACGCTGGCCTCTACGGGt < 1:7119736/35‑1 (MQ=255) gtcgTAAAATGTCAGCGACGCTGGCCTCTACGGGt < 1:14821687/35‑1 (MQ=255) gtcgTAAAATGTCAGCGACGCTGGCCTCTACGGGt > 1:10445574/1‑35 (MQ=255) gtcgTAAAATGTCAGCGACGCTGGCCTCTACGGGt > 1:10279256/1‑35 (MQ=255) | ATTCTTTCAGGAATGGGTAAATCAGGGCATGTCGGTCGTAAAATGTCAGCGACGCTGGCCTCTACGGGT > REL606/3012530‑3012598 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |