New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1673413 | 70 (0.680) | 24 (0.250) | 7/44 | NT | 28.7% | intergenic (‑147/+244) | uidA/uidR | beta‑D‑glucuronidase/DNA‑binding transcriptional repressor |
? | REL606 | = 4601575 | 55 (0.580) | intergenic (+52/‑70) | ytjA/yjjU | hypothetical protein/predicted esterase |
Only 100 of 157 total aligned reads displayed.
AAAAGAACTGACACCGCGATCAAAAAACCAAAAACTGCAATACCCACAGCGTGATATAGATCGCATTA > REL606/1673380‑1673447 | aaaaGAACTGACACCGCGATCAAAAAACCAAAAAc > 1:19270882/1‑35 (MQ=255) aaaaGAACTGACACCGCGATCAAAAAACCAAAAAc > 1:6814215/1‑35 (MQ=255) aaaaGAACTGACACCGCGATCAAAAAACCAAAAAc > 1:3809640/1‑35 (MQ=255) aaaaGAACTGACACCGCGATCAAAAAACCAAAAAc < 1:12786870/35‑1 (MQ=255) agaGAACTGACACCGCGATCAAAAAACCAAAAACt < 1:6208694/33‑1 (MQ=255) aaaGAACTGACACCGCGATCAAAAAACCAAAAACt > 1:7068512/1‑35 (MQ=255) aaaGAACTGACACCGCGATCAAAAAACCAAAAACt < 1:19052927/35‑1 (MQ=255) aaaGAACTGACACCGCGATCAAAAAACCAAAAACt > 1:14282465/1‑35 (MQ=255) aaaGAACTGACACCGCGATCAAAAAACCAAAAACt > 1:7969037/1‑35 (MQ=255) aaGAACTGACACCGCGATCAAAAAACCAAAAACTg > 1:3452133/1‑35 (MQ=255) aaGAACTGACACCGCGATCAAAAAACCAAAAACTg > 1:18634404/1‑35 (MQ=255) aaGAACTGACACCGCGATCAAAAAACCAAAAACTg > 1:18107513/1‑35 (MQ=255) aaGAACTGACACCGCGATCAAAAAACCAAAAACTg > 1:8116723/1‑35 (MQ=255) aGAACTGACACCGCGATCAAAAAACCAAAAACTGc < 1:18612565/35‑1 (MQ=255) gAACTGACACCGCGATCAAAAAACCAAAAACTGCa < 1:16978547/35‑1 (MQ=255) gAACTGACACCGCGATCAAAAAACCAAAAACTGCa < 1:15489201/35‑1 (MQ=255) aaCTGACACCGCGATCAAAAAACCAAAAACTGCaa < 1:8254434/35‑1 (MQ=255) aaCTGACACCGCGATCAAAAAACCAAAAACTGCaa > 1:8518087/1‑35 (MQ=255) aaCTGACACCGCGATCAAAAAACCAAAAACTGCaa > 1:2476437/1‑35 (MQ=255) aaCTGACACCGCGATCAAAAAAACAAAAACTGCaa < 1:2865712/35‑1 (MQ=255) aCTGACACCGCGATCAAAAAACCAAAAACTGCAAt > 1:9130203/1‑35 (MQ=255) aCTGACACCGCGATCAAAAAACCAAAAACTGCAAt > 1:10417740/1‑35 (MQ=255) aCTGACACCGCGATCAAAAAACCAAAAACTGCAAt < 1:6648128/35‑1 (MQ=255) tGACACCGCGATCAAAAAACCAAAAACTGCAATAc > 1:7312256/1‑35 (MQ=255) tGACACCGCGATCAAAAAACCAAAAACTGCAATAc < 1:10658083/35‑1 (MQ=255) tGACACCGCGATCAAAAAACCAAAAACTGCAATAc > 1:15621503/1‑35 (MQ=255) gACACCGCGATCAAAAAACCAAAAACTGCAATAcc > 1:8266085/1‑35 (MQ=255) gACACCGCGATCAAAAAACCAAAAACTGCAATAcc < 1:5165215/35‑1 (MQ=255) acacCGCGATCAAAAAACCAAAAACTGCAATAccc > 1:18518542/1‑35 (MQ=255) acacCGCGATCAAAAAACCAAAAACTGCAATAccc > 1:5401034/1‑35 (MQ=255) acacCGCGATCAAAAAACCAAAAACTGCAATAccc < 1:20353280/35‑1 (MQ=255) ccccGCGATCAAAAAACCAAAAACTGCAATACCca < 1:9585715/33‑1 (MQ=255) cacCTCGATCAAAAAACCAAAAACTGCAATACCca > 1:11517110/1‑35 (MQ=255) cacCGCGATCAAAAAACCAAAAACTGCAATACCca > 1:10018025/1‑35 (MQ=255) cacCGCGATCAAAAAACCAAAAACTGCAATACCca < 1:4207035/35‑1 (MQ=255) cacCGCGATCAAAAAACCAAAAACTGCAATACCca > 1:14873059/1‑35 (MQ=255) cacCGCGATCAAAAAACCAAAAACTGCAATACCca > 1:12758867/1‑35 (MQ=255) cccGCGATCAAAAAACCAAAAACTGCAATACCcac < 1:2671416/34‑1 (MQ=255) acCGCGATCAAAAAACCAAAAACTGCAATACCcac > 1:19951016/1‑35 (MQ=255) cgcgATCAAAAAACCAAAAACTGCAATACCCACAg > 1:10630933/1‑35 (MQ=255) gcgATCAAAAAACCAAAAACTGCAATACCCACAGc > 1:10041270/1‑35 (MQ=255) gcgATCAAAAAACCAAAAACTGCAATACCCACAGc > 1:4056704/1‑35 (MQ=255) ttcAAAAAAACAAAAAaagccagtccgctggactg < 1:9482729‑M1/34‑20 (MQ=255) tccaaAAAACCAAAAAaagccagtccgctggactg < 1:1639897‑M1/33‑20 (MQ=255) aTCAAAAAACCAAAAACTGCAATACCCACAGCGTg > 1:13672997/1‑35 (MQ=255) aTCAAAAAACCAAAAACTGCAATACCCACAGCGTg > 1:6623243/1‑35 (MQ=255) ccaAAAAACCCAAAAaagccagtccgctggactgg < 1:3710027‑M1/34‑21 (MQ=255) cAAAAAACCAAAAACTGCAATACCCACAGCGTGat > 1:10254942/1‑35 (MQ=255) aaaaaaCCAAAAAaagccagtccgctggactggct < 1:1633777‑M1/35‑23 (MQ=255) aaaaaaCCAAAAACTGCAATACCCACAGCGTGata > 1:15061373/1‑35 (MQ=255) aaaaaaCCAAAAACTGCAATACCCACAGCGTGata > 1:15593069/1‑35 (MQ=255) aaaaaaACAAAAAaagccagtccgctggactggct < 1:641020‑M1/35‑23 (MQ=255) aaaaaaACAAAAAaagccagtccgctggactggct < 1:2331310‑M1/35‑23 (MQ=255) aaaaaCCAAAAAaagccagtccgctggactggctt < 1:12163945‑M1/35‑24 (MQ=255) aaaaaACAAAAAaagccagtccgctggactggctt < 1:19387833‑M1/35‑24 (MQ=255) aaaaCCAGAAAaagccagtccgctggactggcttt < 1:4367675‑M1/35‑25 (MQ=255) aaaCCCAAAAaagccagtccgctggactggctttg < 1:5574627‑M1/35‑26 (MQ=255) aaaCCAAAAACTGCAATACCCACAGCTTGATATAg > 1:20346639/1‑35 (MQ=255) aaaCCAAAAACTGCAATACCCACAGCGTGATATAg > 1:4327907/1‑35 (MQ=255) aaaACAAAAAaagccagtccgctggactggctttg < 1:328481‑M1/35‑26 (MQ=255) aaCCAAAAAaagccagtccgctggactggctttgg < 1:3458783‑M1/35‑27 (MQ=255) aaCCAAAAACTGCAATACCCACAGCGTGATATAGa > 1:12351549/1‑35 (MQ=255) aaCCAAAAACTGCAATACCCACAGCGTGATATAGa > 1:13388146/1‑35 (MQ=255) aaCCAAAAACTGCAATACCCACAGCGTGATATAGa > 1:15812338/1‑35 (MQ=255) aaCCAAAAACTGCAATACCCACAGCGTGATATAGa > 1:5478596/1‑35 (MQ=255) aCCCAAAAaagccagtccgctggactggctttgga < 1:11612747‑M1/35‑28 (MQ=255) aCCAAAAAaagccagtccgctggactggctttgga < 1:9772349‑M1/35‑28 (MQ=255) aCCAAAAACTGCAATACCCACAGCGTGATATAGAt > 1:6757065/1‑35 (MQ=255) aCCAAAAACTGCAATACCCACAGCGTGATATAGAt > 1:19073661/1‑35 (MQ=255) aCCAAAAACTGCAATACCCACAGCGTGATATAGAt > 1:17752698/1‑35 (MQ=255) ccAAAAAaagccagtccgctggactggctttggat < 1:17031991‑M1/35‑29 (MQ=255) ccAAAAACTGCAATACCCACAGCGTGATATAGATc > 1:12648968/1‑35 (MQ=255) caaaaaaaagccagtccgctggactggctttggat < 1:3278654‑M1/33‑29 (MQ=255) caaaaaaaagccagtccgctggactggctttggat < 1:14225253‑M1/33‑29 (MQ=255) caaaaaaCTGCAATACCCACAGCGTGATATAGATc < 1:13064171/33‑1 (MQ=255) cAAAAGCTGCAATACCCACAGCGTGATATAGATCg < 1:20030965/35‑1 (MQ=255) cAAAACCTGCAATACCCACAGCGTGATATAGATCg < 1:996487/35‑1 (MQ=255) cAAAAAaagccagtccgctggactggctttggata < 1:9332146‑M1/35‑30 (MQ=255) cAAAAAaagccagtccgctggactggctttggata < 1:14609413‑M1/35‑30 (MQ=255) cAAAAACTGCAATACCCACAGCGTGATATAGATCg > 1:16610819/1‑35 (MQ=255) aaaaaaaagccagtccgctggactggctttggata < 1:16257160‑M1/34‑30 (MQ=255) aaaaaaagccagtccgctggactggctttggataa < 1:7135542‑M1/35‑31 (MQ=255) aaaaaCTGCAATACCCACAGCGTGATATAGATCGc < 1:18923372/35‑1 (MQ=255) aaaaaCTGCAATACCCACAGCGTGATATAGATCGc > 1:18762354/1‑35 (MQ=255) aaaaaagccagtccgctggactggctttggataaa < 1:4602315‑M1/35‑32 (MQ=255) aaaaCTGCAATACCCACAGCGTGATATAGATCGCa < 1:18903477/35‑1 (MQ=255) aaaaCTGCAATACCCACAGCGTGATATAGATCGCa > 1:18545702/1‑35 (MQ=255) aaaaCTGCAATACCCACAGCGTGATATAGATCGCa < 1:15356158/35‑1 (MQ=255) aaaaagccagtccgctggactggctttggataaaa < 1:15850565‑M1/35‑33 (MQ=255) aaaaagccagtccgctggactggctttggataaaa < 1:17989862‑M1/35‑33 (MQ=255) aaaCTGCAATACCCACAGCGTGATATAGATCGCAt > 1:19314296/1‑35 (MQ=255) aaaagccagtccgctggactggcttttgataaaat > 1:2805806‑M1/1‑2 (MQ=255) aaaagccagtccgctggactggctttggataaaat < 1:6435527‑M1/35‑34 (MQ=255) aaaagccagtccgctggactggctttggataaaat > 1:6151916‑M1/1‑2 (MQ=255) aaaagccagtccgctggactggctttggataaaan < 1:4435753‑M1/35‑34 (MQ=255) aaagccagtcctctggactggctttggataaaatt > 1:11823070‑M1/1‑1 (MQ=255) aaagccagtccgctggactggctttggataaaatt < 1:6434995‑M1/35‑35 (MQ=255) aCTGCAATACCCACAGCGTGATATAGATCGCATTa > 1:9982839/1‑35 (MQ=255) aCTGCAATACCCACAGCGTGATATAGATCGCATTa > 1:12542704/1‑35 (MQ=255) aCTGCAATACCCACAGCGTGATATAGATCGCATTa < 1:16894797/35‑1 (MQ=255) | AAAAGAACTGACACCGCGATCAAAAAACCAAAAACTGCAATACCCACAGCGTGATATAGATCGCATTA > REL606/1673380‑1673447 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |