New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2389861 =74 (0.720)12 (0.150) 5/38 NT 19.1% coding (116/825 nt) mepA penicillin‑insensitive murein endopeptidase
?REL606 = 2877079 43 (0.530)intergenic (‑276/+39) araE/kduD arabinose transporter/2‑deoxy‑D‑gluconate 3‑dehydrogenase

Only 100 of 146 total aligned reads displayed.

CATGTCAGCGCCGACAATACAGCCATTAGAAAAACTGCCTATCGATTGTGCGCTACCCGGCACAGGTTG  >  REL606/2389827‑2389895
                                  |                                  
tatggattatgatgatctacagatataaaaaaccc                                    <  1:11014321‑M1/1‑1 (MQ=255)
caTGTCAGCGCCGACAATACAGCCATTAGAAAAAc                                    >  1:12103287/1‑35 (MQ=255)
caTGTCAGCGCCGACAATACAGCCATTAGAAAAAc                                    >  1:18920462/1‑35 (MQ=255)
 atggattatgatgatctacagatataaaaaaccCt                                   <  1:14612537‑M1/2‑1 (MQ=255)
 atggattatgatgatctacagatataaaaaaccCt                                   >  1:8292859‑M1/34‑35 (MQ=255)
 aTGTCAGCGCCGACAATACAGCCATTAGAAAAACt                                   >  1:6032362/1‑35 (MQ=255)
 aTGTCAGCGCCGACAATACAGCCATTAGAAAAACt                                   >  1:6189891/1‑35 (MQ=255)
 aTGTCAGCGCCGACAATACAGCCATTAGAAAAACt                                   >  1:7925833/1‑35 (MQ=255)
 aTGTCAGCGCCGACAATACAGCCATTAGAAAAACt                                   >  1:329813/1‑35 (MQ=255)
  tGTCAGCGCCGACAATACAGCCATTAGAAAAACTg                                  >  1:5170339/1‑35 (MQ=255)
   ggattatgatgatctacagatataaaaaaccCTGc                                 <  1:12556240‑M1/4‑1 (MQ=255)
   ggattatgatgatctacagatataaaaaaccCTGc                                 <  1:9650920‑M1/4‑1 (MQ=255)
   ggattatgatgatctacagatataaaaaaccCTGc                                 >  1:16550907‑M1/32‑35 (MQ=255)
   gTCAGCGCCGACAATACAGCCATTAGAAAAACTGc                                 >  1:19775958/1‑35 (MQ=255)
   gTCAGCGCCGACAATACAGCCATTAGAAAAACTGc                                 >  1:15927949/1‑35 (MQ=255)
     cAGCGCCGACAATACAGCCATTAGAAAAACTGCCt                               >  1:10312215/1‑35 (MQ=255)
     cAGCGCCGACAATACAGCCATTAGAAAAACTGCCt                               >  1:1130606/1‑35 (MQ=255)
     cAGCGCCGACAATACAGCCATTAGAAAAACTGCCt                               >  1:18869335/1‑35 (MQ=255)
     cAGCGCCGACAATACAGCCATTAGAAAAACTGCCt                               >  1:4195794/1‑35 (MQ=255)
      aGCGCCGACAATACAGCCATTAGAAAAACTGCCTa                              >  1:5487304/1‑35 (MQ=255)
       gcgcCGACAATACAGCCATTAGAAAAACTGCCTAt                             >  1:10061431/1‑35 (MQ=255)
        cgcCGACAATACAGCCATTAGAAAAACTGCCTATc                            >  1:5455560/1‑35 (MQ=255)
         gcCGACAATACAGCCATTAGAAAAACTGCCTATCg                           >  1:15734069/1‑35 (MQ=255)
         gcCGACAATACAGCCATTAGAAAAACTGCCTATCg                           >  1:17269634/1‑35 (MQ=255)
         gcCGACAATACAGCCATTAGAAAAACTGCCTATCg                           >  1:5725836/1‑35 (MQ=255)
         gcCGACAATACAGCCATTAGAAAAACTGCCTATCg                           >  1:2080249/1‑35 (MQ=255)
         gcCGACAATACAGCCATTAGAAAAACTGCCTATCg                           >  1:12185392/1‑35 (MQ=255)
          ccGACAATACAGCCATTAGAAAAACTGCCTATCGa                          >  1:16005296/1‑35 (MQ=255)
           cGACAATACAGCCATTAGAAAAACTGCCTATCGAt                         >  1:4374028/1‑35 (MQ=255)
           cGACAATACAGCCATTAGAAAAACTGCCTATCGAt                         >  1:13025551/1‑35 (MQ=255)
             aCAATACAGCCATTAGAAAAACTGCCTATCGATtg                       >  1:13748703/1‑35 (MQ=255)
             aCAATACAGCCATTAGAAAAACTGCCTATCGATtg                       >  1:6280791/1‑35 (MQ=255)
              cAATACAGCCATTAGAAAAACTGCCTATCGATtgt                      >  1:2374018/1‑35 (MQ=255)
               aaTACAGCCATTAGAAAAACTGCCTATCGATtgtg                     >  1:18175281/1‑35 (MQ=255)
                aTACAGCCATTAGAAAAACTGCCTATCGATTGTgc                    >  1:6284289/1‑35 (MQ=255)
                aTACAGCCATTAGAAAAACTGCCTATCGATTGTgc                    >  1:12783517/1‑35 (MQ=255)
                 tACAGCCATTAGAAAAACTGCCTATCGATTGTgcg                   >  1:4241207/1‑35 (MQ=255)
                 tACAGCCATTAGAAAAACTGCCTATCGATTGTgcg                   >  1:14610739/1‑35 (MQ=255)
                 tACAGCCATTAGAAAAACTGCCTATCGATTGTgcg                   >  1:2661799/1‑35 (MQ=255)
                 tACAGCCATTAGAAAAACTGCCTATCGATTGTgcg                   >  1:8009810/1‑35 (MQ=255)
                 tACAGCCATTAGAAAAACTGCCTATCGATTGTgcg                   >  1:2662007/1‑35 (MQ=255)
                 cccAGCCATTAAAAAACCTGCCTATCGATTGTgcg                   <  1:5525167/33‑1 (MQ=25)
                   cacccATAAAAAAACCTGCCTATCGATTGTGCGCt                 <  1:10082031/32‑1 (MQ=16)
                   cacccATAAAAAAACCTGCCTATCGATTGTGCGCt                 <  1:3918578/32‑1 (MQ=16)
                   cAGCCATTAGAAAAACTGCCTATCGATTGTGCGCt                 >  1:19930411/1‑35 (MQ=255)
                   cAGCCATTAGAAAAACTGCCTATCGATTGTGCGCt                 >  1:9261824/1‑35 (MQ=255)
                   cAGCCATTAGAAAAACTGCCTATCGATTGTGCGCt                 >  1:10724918/1‑35 (MQ=255)
                   cAGCCATTAGAAAAACTGCCTATCGATTGTGCGCt                 >  1:8358806/1‑35 (MQ=255)
                    aGCCATTAGAAAAACTGCCTATCGATTGTGCGCTa                >  1:19697641/1‑35 (MQ=255)
                      ccataaaaaaccCTGCCTATCGATTGTGCGCTAcc              >  1:16829145‑M1/13‑35 (MQ=255)
                      ccATTAGAAAAACTGCCTATCGATTGTGCGTTAcc              >  1:11104833/1‑35 (MQ=255)
                       aaaaaaaaaccCTGCCTATCGATTGTGCGCTAccc             >  1:6828270‑M1/12‑35 (MQ=255)
                        ataagaaaccCTGCCTATCGATTGTGCGCTACCCg            >  1:18057451‑M1/11‑35 (MQ=255)
                         ttAGAAAAACTGCCTATCGATTGTGCGCTACCCgg           >  1:10554736/1‑35 (MQ=255)
                         ttAGAAAAACTGCCTATCGATTGTGCGCTACCCgg           >  1:5060970/1‑35 (MQ=255)
                         ttAGAAAAACTGCCTATCGATTGTGCGCTACCCgg           >  1:11201299/1‑35 (MQ=255)
                         ttAAAAAACCTGCCTATCGATTGTGCGCTACCCgg           <  1:3826061/35‑1 (MQ=38)
                         taaaaaaccCTGCCTATCGATTGTGCGCTACCCgg           >  1:4856770‑M1/10‑35 (MQ=255)
                         taaGAAAACCTGCCTATCGATTGTGCGCTACCCgg           <  1:9789919/33‑1 (MQ=255)
                          tAGAAAAACTGCCTATCGATTGTGCGCTACCCGGc          >  1:8844647/1‑35 (MQ=255)
                          aaaaaaccCTGCCTATCGATTGTGCGCTACCCGGc          >  1:7478569‑M1/9‑35 (MQ=255)
                          aaaaaaccCTGCCTATCGATTGTGCGCTACCCGGc          >  1:2873065‑M1/9‑35 (MQ=255)
                          aaaaaaccCTGCCTATCGATTGTGCGCTACCCGGc          >  1:16799864‑M1/9‑35 (MQ=255)
                           aaaaaccCTGCCTATCGATTGTGCGCTACCCGGca         >  1:9423415‑M1/8‑35 (MQ=255)
                           aGAAAAACTGCCTATCGATTGTGCGCTACCCGGca         >  1:14187199/1‑35 (MQ=255)
                           aGAAAAACTGCCTATCGATTGTGCGCTACCCGGca         >  1:16073612/1‑35 (MQ=255)
                           aGAAAAACTGCCTATCGATTGTGCGCTACCCGGca         >  1:1167899/1‑35 (MQ=255)
                           aGAAAAACTGCCTATCGATTGTGCGCTACCCGGca         >  1:8460013/1‑35 (MQ=255)
                           aGAAAAACTGCCTATCGATTGTGCGCTACCCGGca         >  1:10266979/1‑35 (MQ=255)
                            gAAAAACTGCCTATCGATAGTGCGCTACCCGGcac        >  1:4989758/1‑35 (MQ=255)
                            aaaaccCTGCCTATCGATTGTGCGCTACCCGGcac        >  1:1201122‑M1/7‑35 (MQ=255)
                            aaaaccCTGCCTATCGATTGTGCGCTACCCGGcac        >  1:15037798‑M1/7‑35 (MQ=255)
                             aaaccCTGCCTATCGATTGTGCGCTACCCGGcaca       >  1:3633388‑M1/6‑35 (MQ=255)
                             aaaccCTGCCTATCGATTGTGCGCTACCCGGcaca       >  1:713771‑M1/6‑35 (MQ=255)
                              aaccCTGCCTATCGATTGTGCGCTACCCGGCACAg      >  1:18615384‑M1/5‑35 (MQ=255)
                              aaccCTGCCTATCGATTGTGCGCTACCCGGCACAg      >  1:288221‑M1/5‑35 (MQ=255)
                              aaacCTGCCTATCGATTGTGCGCTACCCGGCACAg      >  1:8843388‑M1/5‑35 (MQ=255)
                              aaaaCTGCCTATCGATTGTGCGCTACCCGGCACAg      >  1:1230399/1‑35 (MQ=255)
                              aaaaCTGCCTATCGATTGTGCGCTACCCGGCACAg      >  1:3198735/1‑35 (MQ=255)
                              aaaaCTGCCTATCGATTGTGCGCTACCCGGCACAg      >  1:4785673/1‑35 (MQ=255)
                               accCTGCCTATCGATTGTGCGCTACCCGGCACAgg     >  1:18780219‑M1/4‑35 (MQ=255)
                               aaaCTGCCTATCGATTGTGCGCTACCCGGCACAgg     >  1:10458914/1‑35 (MQ=255)
                                gaCTGCCTATCGATTGTGCGCTACCCGGCACAGGt    >  1:15327770/2‑35 (MQ=255)
                                ccCTGCCTATCGATTGTGCGCTACCCGGCACAGGt    >  1:16658529‑M1/3‑35 (MQ=255)
                                ccCTGCCTATCGATTGTGAGCTACCCGGCACAGGt    >  1:4394880‑M1/3‑35 (MQ=255)
                                aaCTGCCTATCGATTGTGCGCTACCCGGCACAGGt    >  1:1511692/1‑35 (MQ=255)
                                aaCTGCCTATCGATTGTGCGCTACCCGGCACAGGt    >  1:15213365/1‑35 (MQ=255)
                                aaCTGCCTATCGATTGTGCGCTACCCGGCACAGGt    >  1:75150/1‑35 (MQ=255)
                                 cCTGCCTATCGATTGTGCGCTACCCGGCACAGGtt   >  1:16951609‑M1/2‑35 (MQ=255)
                                 aCTGCCTATCGATTGTGCGCTACCCGGCACAgggt   >  1:5557172/1‑33 (MQ=255)
                                 aCTGCCTATCGATTGTGCGCTACCCGGCACAGGtt   <  1:11662597/35‑1 (MQ=255)
                                 aCTGCCTATCGATTGTGCGCTACCCGGCACAGGtt   >  1:13273474/1‑35 (MQ=255)
                                 aCTGCCTATCGATTGTGCGCTACCCGGCACAGGtt   >  1:8638348/1‑35 (MQ=255)
                                  CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg  <  1:10396417‑M1/35‑1 (MQ=255)
                                  CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg  <  1:10006172‑M1/35‑1 (MQ=255)
                                  CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg  <  1:17478388‑M1/35‑1 (MQ=255)
                                  CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg  >  1:8759071‑M1/1‑35 (MQ=255)
                                  CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg  <  1:10885735‑M1/35‑1 (MQ=255)
                                  CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg  >  1:1188650‑M1/1‑35 (MQ=255)
                                  CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg  <  1:5750520‑M1/35‑1 (MQ=255)
                                  |                                  
CATGTCAGCGCCGACAATACAGCCATTAGAAAAACTGCCTATCGATTGTGCGCTACCCGGCACAGGTTG  >  REL606/2389827‑2389895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.