New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 375752576 (0.740)22 (0.260) 8/40 NT 23.1% coding (295/618 nt) yicG conserved inner membrane protein
?REL606 4085859 = 83 (0.970)intergenic (+57/‑92) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F

CAAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3757488‑3757525
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTA  >  REL606/4085859‑4085892
                                                                        
CAAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGG                                       <  1:9613446/35‑1
CAAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGG                                       <  1:8445216/35‑1
CAAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGG                                       >  1:6950418/1‑35
CAAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGG                                       <  1:18696230/35‑1
CAAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGG                                       >  1:1504985/1‑35
CAAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGG                                       >  1:10089714/1‑35
 AAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGg                                      >  1:19156961/1‑34
 AAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGT                                      >  1:8548655/1‑35
 AAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGT                                      >  1:11278636/1‑35
 AAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGT                                      >  1:14108249/1‑35
 AAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGT                                      <  1:489610/35‑1
 AAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGT                                      >  1:4111263/1‑35
 AAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGT                                      >  1:12084761/1‑35
  AAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGTG                                     <  1:8142889/35‑1
  AAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGTG                                     >  1:14763992/1‑35
  AAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGTG                                     <  1:6042625/35‑1
  AAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGTG                                     >  1:19453130/1‑35
  AAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGTG                                     >  1:19156041/1‑35
   AGTGTTTCTGGTGCTCGATGCGCTCGGACTGGTGG                                    <  1:6920616/35‑1
    GTGTTTCTGGTGCTCGATGCGCTCGGACTGGTGGG                                   >  1:2173867/1‑35
    GTGTTTCTGGTGCTCGATGCGCTCGGACTGGTGGG                                   >  1:12684223/1‑35
     TGTTTCTGGTGCTCGATGCGCTCGGACTGGTGGGc                                  >  1:6619601/1‑34
      GTTTCTGGTGCTCGATGCGCTCGGACTGGTGGGGc                                 >  1:8646016/1‑34
      GTTTCTGGTGCTCGATGCGCTCGGACTGGTGGGGG                                 >  1:15223736/1‑35
      GTTTCTGGTGCTCGATGCGCTCGGACTGGTGGGGG                                 >  1:19229599/1‑35
      GTTTCTGGTGCTCGATGCGCTCGGACTGGTGGGGG                                 >  1:19780776/1‑35
       TTTCTGGTGCTCGATGCGCTCGGACTGGTGGGGtt                                >  1:8904392/1‑33
       TTTCTGGTGCTCGATGCGCTCGGACTGGTGGGGtt                                >  1:1795157/1‑33
        TTCTGGTGCTCGATGCGCTCGGACTGGTGGGGTTT                               >  1:13334604/1‑35
        TTCTGGTGCTCGATGCGCTCGGACTGGTGGGGTTT                               >  1:3431137/1‑35
        TTCTGGTGCTCGATGCGCTCGGACTGGTGGGGTTT                               >  1:15366140/1‑35
         TCTGGTGCTCGATGCGCTCGGACTGGTGGGGTTTT                              >  1:3340384/1‑35
         TCTGGTGCTCGATGCGCTCGGACTGGTGGGGTTTT                              >  1:3090906/1‑35
         TCTGGTGCTCGATGCGCTCGGACTGGTGGGGTTTT                              >  1:9100542/1‑35
         TCTGGTGCTCGATGCGCTCGGACTGGTGGGGGTTT                              >  1:155733/1‑35
         TCTGGTGCTCGATGCGCTCGGACTGGTGGGGGTTT                              >  1:11468614/1‑35
         TCTGGTGCTCGATGCGCTCGGACTGGTGGGGGTTT                              >  1:12362304/1‑35
          CTGGTGCTCGATGCGCTCGGACTGGTGGGGTTTTT                             >  1:6922889/1‑35
          CTGGTGCTCGATGCGCTCGGACTGGTGGGGTTTTT                             >  1:8445497/1‑35
          CTGGTGCTCGATGCGCTCGGACTGGTGGGGGTTTT                             >  1:7054788/1‑35
           TGGTGCTCGATGCGCTCGGACTGGTGGGGTTTTTT                            >  1:19222064/1‑35
            GGTGCTCGATGCGCTCGGACTGGTGGGGTTTTTTT                           >  1:6823485/1‑35
            GGTGCTCGATGCGCTCGGACTGGTGGGGGTTTTTT                           >  1:6387867/1‑35
             GTGCTCGATGCGCTCGGACTGGTGGGGTTTTTTTT                          >  1:18116701/1‑35
             GTGCTCGATGCGCTCGGACTGGTGGGGTTTTTTTT                          >  1:1800824/1‑35
             GTGCTCGATGCGCTCGGACTGGTGGGGGTTTTTTT                          >  1:17159742/1‑35
              TGCTCGATGCGCTCGGACTGGTGGGGTTTTTTTTT                         >  1:13995306/1‑35
              TGCTCGATGCGCTCGGACTGGTGGGGTTTTTTTTT                         >  1:9005826/1‑35
              TGCTCGATGCGCTCGGACTGGTGGGGGTTTTTTTc                         >  1:6538142/1‑34
              TGCTCGATGCGCTCGGACTGGTGGGGGTTCTTTTc                         >  1:8402984/1‑34
               GCTCGATGCGCTCGGACTGGTGGGGGTTTTTTTTA                        >  1:6133784/1‑35
                CTCGATGCGCTCGGACTGGTGGGGTTTTTTTTTAT                       >  1:19248839/1‑35
                  CGATGCGCTCGGACTGGTGGGGTTTTTTTTTATCg                     >  1:15800509/1‑34
                                  GTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGC     <  1:19635111/35‑1
                                  GTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGC     <  1:9424556/35‑1
                                  GTGGGGGTTTTTTTTATCATCAATTTGCCTGCTGC     <  1:16248233/35‑1
                                   TGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGgt    >  1:8033684/1‑33
                                   TGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCT    <  1:5123144/35‑1
                                   TGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCT    >  1:8507077/1‑35
                                   TGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCT    <  1:19123130/35‑1
                                   TGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCT    >  1:13659786/1‑35
                                    tGGGGGTTTTTTTATCCTCAATTTGCCTGCTGCTT   >  1:9257967/2‑35
                                    GGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTT   <  1:7220217/35‑1
                                    GGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTT   >  1:6978210/1‑35
                                    GGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTT   >  1:14564143/1‑35
                                    GGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTT   >  1:6361683/1‑35
                                    GGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTT   >  1:6157337/1‑35
                                    GGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTT   <  1:15286746/35‑1
                                    GGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTT   <  1:3024545/35‑1
                                    GGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTT   <  1:2783664/35‑1
                                    GGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTT   >  1:17447071/1‑35
                                     GGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTA  <  1:3646561/35‑1
                                     GGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTA  >  1:17466268/1‑35
                                     GGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTA  >  1:9536837/1‑35
                                                                        
CAAAGTGTTTCTGGTGCTCGATGCGCTCGGACTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3757488‑3757525
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTA  >  REL606/4085859‑4085892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.