New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 462517 =55 (0.540)11 (0.120) 4/42 NT 17.3% coding (363/528 nt) priC primosomal replication protein N''
?REL606 1306336 = 57 (0.630)intergenic (‑97/+274) cls/kch cardiolipin synthetase/voltage‑gated potassium channel

Only 100 of 329 total aligned reads displayed.

ATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGCGGGGGTATAATGACCATTCTGTTATTGCATA  >  REL606/1306302‑1306370
                                  |                                  
tggtcggttattccgcgatgggtggtgcagtcggg                                    >  1:16298736‑M2/35‑35 (MQ=255)
tcgataattttgccaaccacgattttcGCGTcggg                                    <  1:14462357‑M1/8‑1 (MQ=255)
atctcgacaaagcccgtctggtggtcagcgtcggg                                    >  1:14936413‑M2/35‑35 (MQ=255)
atctcgacaaagcccgtctggtggtcagcgtcggg                                    >  1:2843446‑M2/35‑35 (MQ=255)
acagcccctggataaacttgctctcCAGCGTcggg                                    <  1:12965351‑M1/10‑1 (MQ=255)
 tAAAAACGCGGGAAAAGCACTGGTCAGCGTcgggg                                   <  1:11648226/35‑1 (MQ=255)
 ggtcggttattccgcgatgggtggtgcagtcgggg                                   >  1:2218998‑M2/34‑35 (MQ=255)
 ggtcggttattccgcgatgggtggtgcagtcgggg                                   >  1:3290402‑M2/34‑35 (MQ=255)
 ggtcggttattccgcgatgggtggtgcagtcgggg                                   >  1:16871473‑M2/34‑35 (MQ=255)
 ggtcggttattccgcgatgggtggtgcagtcgggg                                   >  1:3396135‑M2/34‑35 (MQ=255)
 gaataccggtatgacgctgctttccagcgtcgggg                                   >  1:18318876‑M2/34‑35 (MQ=255)
 cgataattttgccaaccacgattttcGCGTcgggg                                   <  1:5132009‑M1/9‑1 (MQ=255)
 cgataattttgccaaccacgattttcGCGTcgggg                                   <  1:12332230‑M1/9‑1 (MQ=255)
 cagcccctggataaacttgctctcCAGCGTcgggg                                   <  1:5915495‑M1/11‑1 (MQ=255)
 cagcccctggacaaacttgctctcCAGCGTcgggg                                   <  1:16618140‑M1/11‑1 (MQ=255)
 aaacgtattcagcatcaggattttgagcggcgggg                                   >  1:9142912‑M2/34‑35 (MQ=255)
  tacaccaaatgcaccagcctttTCAGCGTcggggg                                  <  1:7541054‑M1/13‑1 (MQ=255)
  gataattttgccaaccacgattttcGCGTcggggg                                  <  1:11945611‑M1/10‑1 (MQ=255)
  gataattttgccaaccacgattttcGCGTcggggg                                  <  1:18967234‑M1/10‑1 (MQ=255)
  gataattttgccaaccacgattttcGCGTcggggg                                  <  1:9460870‑M1/10‑1 (MQ=255)
  ctcgacaaagcccgtctggtggtcagcgtcggggg                                  >  1:19061176‑M2/33‑35 (MQ=255)
  agcccctggataaacttgctctcCAGCGTcggggg                                  <  1:10780355‑M1/12‑1 (MQ=255)
  agcccctggataaacttgctctcCAGCGTcggggg                                  <  1:5623750‑M1/12‑1 (MQ=255)
  aataccggtatgacgcttctttccagcgtcggggg                                  >  1:19743269‑M2/33‑35 (MQ=255)
  aacgtattcagcatcaggattttgagcggcggggg                                  >  1:18008319‑M2/33‑35 (MQ=255)
  aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggg                                  >  1:9571039/1‑35 (MQ=255)
  aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggg                                  >  1:14483045/1‑35 (MQ=255)
  aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggg                                  <  1:8365631/35‑1 (MQ=255)
  aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggg                                  >  1:3685548/1‑35 (MQ=255)
   tcgacaaagcccgtctggtggtcagcgtcgggggg                                 >  1:4613301‑M2/32‑34 (MQ=255)
   gcccctggataaacttgctctcCAGCGtcgggggg                                 <  1:20092454‑M1/13‑2 (MQ=255)
   gcccctggataaacttgctctcCAGCGtcgggggg                                 <  1:7062122‑M1/13‑2 (MQ=255)
   ataccggtatgacgctgctttccagcgtcgggggg                                 >  1:1856063‑M2/32‑34 (MQ=255)
   acaccaaatgcaccagcctttTCAGCGtcgggggg                                 <  1:15680245‑M1/14‑2 (MQ=255)
   aacggtttaatatcgcgcataaatgcgtcgggggg                                 >  1:14816966‑M2/32‑34 (MQ=255)
    taattttgccaaccacgattttcGCgtcggggggg                                <  1:16692973‑M1/12‑3 (MQ=255)
    cgtattcagcatcaggattttgagcggcggggcac                                >  1:4482473‑M2/31‑32 (MQ=255)
    cggttattccgcgatgggtggtgcagtcgggggcc                                >  1:1350007‑M2/31‑34 (MQ=255)
    cgacaaagcccgtctggtggtcagcgtcggggggg                                >  1:17496806‑M2/31‑33 (MQ=255)
     gtattcagcatcaggattttgagcggcgggggggg                               >  1:13033854‑M2/30‑35 (MQ=255)
     gacaaagcccgtctggtggtcagcgtcgggggggg                               >  1:2563311‑M2/30‑35 (MQ=255)
     cggtttaatatcgcgcataaatgcgtcgggggggg                               >  1:12070471‑M2/30‑35 (MQ=255)
     cggtttaatatcgcgcataaatgcgtcggggggcg                               >  1:1592207‑M2/30‑32 (MQ=255)
     aattttgccaaccacgattttcGcgtcgggggggg                               <  1:18781573‑M1/13‑4 (MQ=255)
     aaCGCGGGAAAAGCACTGGTCAGCGTcgggggcgg                               <  1:15475852/35‑1 (MQ=255)
     aaCGCGGGAAAAGCACTGGTCAGCGTcgggggcgg                               >  1:5020385/1‑35 (MQ=255)
      ggtttaatatcgcgcataaatgcgtcggggggggg                              >  1:14125139‑M2/29‑35 (MQ=255)
      ggtttaatatcgcgcataaatgcgtcggggggggg                              >  1:5156231‑M2/29‑35 (MQ=255)
      ggtttaatatcgcgcataaatgcgtcgggggcggg                              >  1:5368361‑M2/29‑35 (MQ=255)
      cctggataaacttgctctcCAGCGTcggggggggg                              <  1:623907‑M1/16‑1 (MQ=255)
       ttttgccaaccacgattttcGCGTcgggggggggg                             <  1:6363326‑M1/15‑1 (MQ=255)
       ttttgccaaccacgattttcGCGTcgggggggggg                             <  1:14713936‑M1/15‑1 (MQ=255)
       ttttgccaaccacgattttcGCGTcgggggggggg                             <  1:19819937‑M1/15‑1 (MQ=255)
       ttttgccaaccacgattttcGCGTcgggggggggg                             <  1:11338889‑M1/15‑1 (MQ=255)
       ttattccgcgatgggtggtgcagtcgggggcgggg                             >  1:1155530‑M2/28‑35 (MQ=255)
       cggtatgacgctgctttccagcgtcgggggggggg                             >  1:3996491‑M2/28‑35 (MQ=255)
       cgcgGGAAAAGCACTGGTCAGCGTcgggggcgggg                             <  1:19347200/35‑1 (MQ=255)
       cgcgGGAAAAGCACTGGTCAGAGTcgggggcgggg                             <  1:3516590/35‑1 (MQ=255)
       caaatgcaccagcctttTCAGCGTcgggggggggg                             <  1:12209947‑M1/18‑1 (MQ=255)
       caaatgcaccagcctttTCAGCGTcgggggggggg                             <  1:2719700‑M1/18‑1 (MQ=255)
       caaagcccgtctggtggtcagcgtcgggggggggg                             >  1:12668824‑M2/28‑35 (MQ=255)
        tttgccaaccacgattttcGCGTcggggggggggg                            <  1:2107096‑M1/16‑1 (MQ=255)
        tttaatatcgcgcataaatgcgtcggggggggggg                            >  1:4924808‑M2/27‑35 (MQ=255)
        tattccgcgatgggtggtgcagtcgggggcggggg                            >  1:10431294‑M2/27‑35 (MQ=255)
        ggtatgacgctgctttccagcgtcggggggggggg                            >  1:10827774‑M2/27‑35 (MQ=255)
        aaagcccgtctggtggtcagcgtcggggggggggg                            >  1:10577838‑M2/27‑35 (MQ=255)
         tcagcatcaggattttgagcggcgggggcggggga                           >  1:8871800‑M2/26‑34 (MQ=255)
         attccgcgatgggtggtgcagtcgggggcgggggg                           >  1:8983872‑M2/26‑34 (MQ=255)
         aagcccgtctggtggtcagcgtcgggggggggggg                           >  1:3084660‑M2/26‑34 (MQ=255)
          gggAAAAGCACTGGTCAGCGTCGGGGGCGGGGGta                          <  1:3197120/35‑1 (MQ=255)
           ggAAAAGCACTGGTCAGCGTCGGGGGCGGGGGgat                         >  1:8100089/1‑35 (MQ=255)
            gAAAAGCACTGGTCAGCGTCGGGGGCGGGGGtata                        <  1:2007744/35‑1 (MQ=255)
            gAAAAGCACTGGTCAGCGTCGGGGGCGGGGGgata                        >  1:8201132/1‑35 (MQ=255)
             aaaaGCACTGGTCAGCGTCGGGGGCGGGGGGATaa                       >  1:7918355/1‑35 (MQ=255)
              aaaGCACTGGTCAGCGTCGGGGGCGGGGGTATAAt                      >  1:6665616/1‑35 (MQ=255)
              aaaGCACTGGTCAGCGACGGGGGCGGGGGGAGAAt                      >  1:19182598/1‑35 (MQ=25)
               aaGCACTGGTCAGCGTCGGGGGCGGGGGTATAATg                     <  1:8559725/35‑1 (MQ=255)
                aGCACTGGTCAGCGTCGGGGGCGGGGGTATAATGa                    <  1:6617072/35‑1 (MQ=255)
                  cACTGGTCAGCGTCGGGGGCGGGGGTATAATGAcc                  <  1:10975586/35‑1 (MQ=255)
                  cACTGGTCAGCGTCGGGGGCGGGGGGATAATGAcc                  >  1:7234179/1‑35 (MQ=255)
                   aCTGGTCAGCGTCGGGGGCGGGGGTATAATGACCa                 <  1:17393285/35‑1 (MQ=255)
                    cTGGTCAGCGTCGGGGGCGGGGGTATAATGACCAt                <  1:15799598/35‑1 (MQ=255)
                    cTGGTCAGCGTCGGGGGCGGGGGTATAATGAACAt                <  1:1026223/35‑1 (MQ=255)
                    cTGGTCAGCGTCGGGGGCGGGGGTATAATGAACAt                <  1:15074814/35‑1 (MQ=255)
                      ggtcagcgtcggGGGCGGGGGGATAATGACCATTc              >  1:4715203‑M2/13‑35 (MQ=255)
                       gtcagcgtcggGGGCGGGGGGATAATGACCATTCt             >  1:5443308‑M2/12‑35 (MQ=255)
                        tcagcgtcggGGGCGGGGGTATAATGACCATTCTg            <  1:10005403‑M2/25‑1 (MQ=255)
                        tcagcgtcggGGGCGGGGGGATAATGACCATTCTg            >  1:6913907‑M2/11‑35 (MQ=255)
                          agcgtcggGGGCGGGGGTATAATGACCATTCTGtt          <  1:780094‑M2/27‑1 (MQ=255)
                          agcgtcggGGGCGGGGGTATAATGACCATTCTGtt          <  1:20426773‑M2/27‑1 (MQ=255)
                            cgtcggGGGCGGGGGTATAATGACCATTCTGTTAt        >  1:13661356‑M2/7‑35 (MQ=255)
                             gtcggGGGCGGGGGTATAATGACAATTCTGTTAtt       <  1:2386677‑M2/30‑1 (MQ=255)
                              tcggGGGCGTGGGTATAATGACCATTCTGTTATTg      >  1:9292607‑M2/5‑35 (MQ=255)
                              tcggGGGCGGGGGTATAATGACCATTCTGTTATTg      <  1:6028338‑M2/31‑1 (MQ=255)
                               cggGGGCGGGGGTATAATGACCATTCTGTTATTGc     <  1:12757251‑M2/32‑1 (MQ=255)
                               cggGGGCGGGGGTATAATGACCATTCTGTTATTGc     <  1:1778674‑M2/32‑1 (MQ=255)
                                ggGGGCGGGGGTATAATGACCATTCTGTTATTGCa    <  1:2275497‑M2/33‑1 (MQ=255)
                                 gGGGCTGGGGTATAATGACCATTCTGTTATTGCAt   >  1:17250216‑M2/2‑35 (MQ=255)
                                 gGGGCGGGGGTATAATGACCATTCTGTTATTGCAt   >  1:6451332‑M2/2‑35 (MQ=255)
                                  gggcgggggTATAATGACCATTCTGTTATTGCATa  >  1:8745797/1‑35 (MQ=255)
                                  |                                  
ATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGCGGGGGTATAATGACCATTCTGTTATTGCATA  >  REL606/1306302‑1306370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.