New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 75650964 (0.620)16 (0.210) 4/36 NT 23.0% coding (475/693 nt) tolQ membrane spanning protein in TolA‑TolQ‑TolR complex
?REL606 1539626 = 59 (0.770)coding (46/2400 nt) dos cAMP phosphodiesterase, heme‑regulated

Only 100 of 131 total aligned reads displayed.

GGGGATCATGCACGCCTTTATCGCCCTCGGGGCGGTAAAACAAGCAACACTGCAAATGGTTGCGCCCGG  >  REL606/756475‑756543
                                   |                                  
ggggATCATGCACGCCTTTATCGCCCTCGTGGCGG                                    >  1:8572960‑M1/1‑35 (MQ=255)
ggggATCATGCACGCCTTTATCGCCCTCGGGGCGG                                    >  1:10197429‑M1/1‑35 (MQ=255)
ggggATCATGCACGCCTTTATCGCCCTCGGGGCGG                                    <  1:17935926‑M1/35‑1 (MQ=255)
ggggATCATGCACGCCTTTATCGCCCTCGGGGCGG                                    <  1:20413601‑M1/35‑1 (MQ=255)
 gggATCATGCACGCCTTTATCGCCCTCGGGGCGGt                                   <  1:2511669/35‑1 (MQ=255)
 gggATCATGCACGCCTTTATCGCCCTCGGGGCGGt                                   <  1:7270040/35‑1 (MQ=255)
 gggATCATGCACGCCTTTATCGCCCTCGGGGCGGt                                   <  1:6658290/35‑1 (MQ=255)
 gggATCATGCACGCCTTTATCGCCCTCGGGGCGGg                                   >  1:4816494‑M1/1‑34 (MQ=255)
 gggATCATGCACGCCTTTATCGCCCTCGGGGCGGg                                   >  1:2168112‑M1/1‑34 (MQ=255)
 gggATCATGCACGCCTTTATCGCCCTCGGGGCGGg                                   >  1:11980529‑M1/1‑34 (MQ=255)
  ggATCATGCACGCCTTTATCGCCCTCGTGGCGGgg                                  >  1:20244372‑M1/1‑33 (MQ=255)
  ggATCATGCACGCCTTTATCGCCCTCGGGGCGGgg                                  >  1:11223072‑M1/1‑33 (MQ=255)
  ggATCATGCACGCCTTTATCGCCCTCGGGGCGGgg                                  >  1:13708483‑M1/1‑33 (MQ=255)
  ggATCATGCACGCCTTTATCGCCCTCGGGGCAGTa                                  <  1:14120138/35‑1 (MQ=255)
    aTCATGCACGCCTTTATCGCCCTCGGGGCGGggaa                                >  1:15565978‑M1/1‑31 (MQ=255)
    aTCATGCACGCCTTTATCGCCCTCGGGGCGGTaaa                                <  1:3952907/35‑1 (MQ=255)
     tCATGCACGCCTTTATCGCCCTCGGGGCGGgaaag                               >  1:748425‑M1/1‑30 (MQ=255)
      cATGCACGCCTTTATCTCCCTCGGGGCGGggaaaa                              >  1:4059524‑M1/1‑29 (MQ=255)
      cATGCACGCCTTTATCGCCCTCGGTGCGGTaagat                              >  1:9451178/1‑32 (MQ=37)
      cATGCACGCCTTTATCGCCCTCGGGGCGGggaaaa                              >  1:15565613‑M1/1‑29 (MQ=255)
      cATGCACGCCTTTATCGCCCTCGGGGCGGTAAAAc                              <  1:15606766/35‑1 (MQ=255)
      cATGCACGCCTTTATCGCCCTCGGGGCGGTAAAAc                              <  1:6002771/35‑1 (MQ=255)
       aTGCACGCCTTTATCGCCCTCGGGGCGGTAAAACa                             <  1:20076676/35‑1 (MQ=255)
       aTGCACGCCTTTATCGCCCTCGGGGCGGTAAAACa                             <  1:16566981/35‑1 (MQ=255)
       aTGCACGCCTTTATCGCCCTCGGGGCGGTAAAACa                             <  1:10011639/35‑1 (MQ=255)
        tGCACGCCTTTATCGCCCTCGGGGCGGgggaaaaa                            >  1:3153834‑M1/1‑27 (MQ=255)
         gCACGCCTTTATCGCCCTCGGGGCGGggaaacaaa                           >  1:5288674‑M1/1‑26 (MQ=255)
         gCACGCCTTTATCGCCCTCGGGGCGGggaaaaaaa                           >  1:2703605‑M1/1‑26 (MQ=255)
         gCACGCCTTTATCGCCCTCGGGGCGGTAAAACAAg                           <  1:1552656/35‑1 (MQ=255)
         gCACGCCTTTATCGCCCTCGGGGCGGTAAAACAAg                           <  1:4836084/35‑1 (MQ=255)
         gCACGCCTTTATCGCCCTCGGGGCGGTAAAACAAg                           <  1:19810507/35‑1 (MQ=255)
         gCACGCCTTTATCGCCCTCGGGGCGGTAAAACAAg                           <  1:828381/35‑1 (MQ=255)
         gCACGCCTTTATCGCCCTCGGGGCGGTAAAACAAg                           <  1:17196492/35‑1 (MQ=255)
          cACGCCTTTATCGCCCTCGGGGCGGggaaaaaaaa                          >  1:15051438‑M1/1‑25 (MQ=255)
          cACGCCTTTATCGCCCTCGGGGCGGggaaaaaaaa                          >  1:6467856‑M1/1‑25 (MQ=255)
          cACGCCTTTATCGCCCTCGGGGCGGgaaaaaaaac                          >  1:16779729‑M1/1‑25 (MQ=255)
          cACGCCTTTATCGCCCTCGGGGCGGGAAAACaaaa                          >  1:16296175/1‑33 (MQ=38)
           aCGCCTTTATCGCCCTCGGGGCGGggaaaaaaaca                         >  1:12542969‑M1/1‑24 (MQ=255)
           aCGCCTTTATCGCCCTCGGGGCGGggaaaaaaaaa                         >  1:16835855‑M1/1‑24 (MQ=255)
           aCGCCTTTATCGCCCTCGGGGCGGGAAAACAAgaa                         >  1:19065641/1‑33 (MQ=38)
           aCGCCTTTATCGCCCTCGGGGCGGGAAAAAAAACa                         >  1:9644608/1‑35 (MQ=25)
            cGCCTTTATCGCCCTCGGGGCGGggaaaaaaacaa                        >  1:19771969‑M1/1‑23 (MQ=255)
            cGCCTTTATCGCCCTCGGGGCGGTAAAACAAGCaa                        <  1:17513252/35‑1 (MQ=255)
            cGCCTTTATCGCCCTCGGGGCGGTAAAACAAGCaa                        <  1:2159487/35‑1 (MQ=255)
             gCCTTTATCGCCCTCGGGGCGGTAAAACAAGCAac                       <  1:1715148/35‑1 (MQ=255)
             gCCTTTATCGCCCTCGGGGCGGTAAAACAAGCAac                       <  1:6651397/35‑1 (MQ=255)
             gCCTTTATCGCCCTCGGGGCGGGGAAACAAACaaa                       >  1:10270873/1‑34 (MQ=25)
             gCCTTTATCGCCCTCGGGGCGGGAAAAAAAACAac                       >  1:3313557/1‑35 (MQ=25)
               cTTTATCGCCCTCGGGGCGGGGAAAACAACAacac                     >  1:338060/1‑35 (MQ=12)
               cTTTATCGCCCTCGGGGCGGTAAAACAAGCAacac                     <  1:17659877/35‑1 (MQ=255)
               cTTTATCGCCCTCGGGGCGGTAAAACAAGCAacac                     <  1:11006455/35‑1 (MQ=255)
               cTTTATCGCCCTCGGGGCGGGGAAAAAAACAacaa                     >  1:16605007/1‑34 (MQ=16)
               cTTTATCGCCCTAGGGGCGGTAAAACAAGCAacac                     <  1:2181247/35‑1 (MQ=255)
                tttATCGCACTCGGGGCGGTAAAACAAGCAACACt                    <  1:316893/35‑1 (MQ=255)
                 ttATCGCCCTCGGGGCGGTAAAACAAGCAACACTg                   <  1:14073755/35‑1 (MQ=255)
                 ttATCGCCCTCGGGGCGGTAAAACAAGCAACACTg                   <  1:13771695/35‑1 (MQ=255)
                  tATCGCCCTCGGGGCGGTAAAACAAGCAACACTGc                  <  1:1140347/35‑1 (MQ=255)
                  tATCGCCCTCGGGGCGGTAAAACAAGCAACACTGc                  <  1:8901351/35‑1 (MQ=255)
                   aTCGCCCTCGGGGCGGTAAAACAAGCAACACTGCa                 <  1:12226323/35‑1 (MQ=255)
                   aTCGCCCTCGGGGCGGTAAAACAAGCAACACTGCa                 <  1:18957327/35‑1 (MQ=255)
                     cGCCCTCGGGGCGGTAAAACAAGCAACACTGCaaa               <  1:4493163/35‑1 (MQ=255)
                     cGCCCTCGGGGCGGTAAAACAAGCAACACTGCaaa               <  1:19399913/35‑1 (MQ=255)
                      gCCCTCGGGGCGGTAAAACAAGCAACACTGCAAAt              <  1:5838125/35‑1 (MQ=255)
                       cccTCGGGGCGGTAAAACAAGCAACACTGCAAATg             <  1:1738930/35‑1 (MQ=255)
                       cccTCGGGGCGGTAAAACAAGCAACACTGCAAATg             <  1:18608334/35‑1 (MQ=255)
                        ccTCGGGGCGGTAAAACAAGCAACAGTGCAAATgg            <  1:13292059/35‑1 (MQ=255)
                        ccTCGGGGCGGTAAAACAAGCAACACTGCAAATgg            <  1:520710/35‑1 (MQ=255)
                         cTCGGGGCGGTAAAACAAGCAACACTGCAAATGGt           <  1:10178060/35‑1 (MQ=255)
                           cGGGGCGGTAAAACAAGCAACACTGCAAATGGTTg         <  1:12482686/35‑1 (MQ=255)
                           cGGGGCGGTAAAACAAGCAACACTGCAAATGGTTg         <  1:5934053/35‑1 (MQ=255)
                           cGGGGCGGTAAAACAAGCAACACTGCAAATGGTTg         <  1:13265333/35‑1 (MQ=255)
                            ggggCGGTAAAACAAGCAACACTGCAAATGGTTgc        <  1:8444470/35‑1 (MQ=255)
                            ggggCGGTAAAACAAGCAACACTGCAAATGGTTgc        <  1:19103210/35‑1 (MQ=255)
                             gggcggggaaaaaaatgccataggcggcattttcc       <  1:4431046‑M1/35‑30 (MQ=255)
                             gggCGGTAAAACAAGCAACACTGCAAATGGTTgcg       <  1:1860629/35‑1 (MQ=255)
                             gggCGGTAAAACAAGCAACACTGCAAATGGTTgcg       >  1:20462334/1‑35 (MQ=255)
                             gggCGGTAAAACAAGCAACACTGCAAATGGTTgcg       <  1:6389097/35‑1 (MQ=255)
                              ggCGGTAAAACAAGCAACACTGCAAATGGTTgcgc      <  1:16164762/35‑1 (MQ=255)
                              ggCGGTAAAACAAGCAACACTGCAAATGGTTgcgc      <  1:17779902/35‑1 (MQ=255)
                              ggCGGTAAAACAAGCAACACTGCAAATGGTTgcgc      <  1:16606451/35‑1 (MQ=255)
                              ggCGGTAAAACAAGCAACACTGCAAATGGTTgcgc      <  1:11577255/35‑1 (MQ=255)
                               gCGGTAAAACAAGCAACACTGCAAATGGTTGCGcc     >  1:4565280/1‑35 (MQ=255)
                               gCGGTAAAACAAGCAACACTGCAAATGGTTGCGcc     >  1:8853619/1‑35 (MQ=255)
                               gCGGTAAAACAAGCAACACTGCAAATGGTTGCGcc     >  1:14413172/1‑35 (MQ=255)
                                cGGTAAAACAAGCAACACTGCAAATGGTTGCGccc    >  1:2323323/1‑35 (MQ=255)
                                cGGTAAAACAAGCAACACTGCAAATGGTTGCGccc    >  1:13961560/1‑35 (MQ=255)
                                cGGTAAAACAAGCAACACTGCAAATGGTTGCGccc    <  1:18029592/35‑1 (MQ=255)
                                cGGTAAAACAAGCAACACTGCAAATGGTTGCGccc    <  1:1377513/35‑1 (MQ=255)
                                cGGTAAAACAAGCAACACTGCAAATGGTTGCGccc    <  1:16125374/35‑1 (MQ=255)
                                cGGTAAAACAAGCAACACTGCAAATGGTTGCGccc    >  1:5010889/1‑35 (MQ=255)
                                cGGTAAAACAAGCAACACTGCAAATGGTTGCGccc    >  1:13564213/1‑35 (MQ=255)
                                 ctgTAAAACAAGCAACACTGCAAATGGTTGCGccc    >  1:11128909/3‑35 (MQ=255)
                                 ctgTAAAACAAGCAACACTGCAAATGGTTGCGccc    >  1:15768930/3‑35 (MQ=255)
                                  ggTAAAACAAGCAACACTGCAAATGGTTGCGCCCg   >  1:7192643/1‑35 (MQ=255)
                                  ggTAAAACAAGCAACACTGCAAATGGTTGCGCCCg   >  1:8098581/1‑35 (MQ=255)
                                  ggTAAAACAAGCAACACTGCAAATGGTTGCGCCCg   <  1:4100134/35‑1 (MQ=255)
                                  ggTAAAACAAGCAACACTGCAAATGGTTGCGCCCg   >  1:9641370/1‑35 (MQ=255)
                                   gTAAAACAAGCAACACTGCAAATGGTTGCGCCCgg  <  1:19032360/35‑1 (MQ=255)
                                   gTAAAACAAGCAACACTGCAAATGGTTGCGCCCgg  <  1:5605945/35‑1 (MQ=255)
                                   gTAAAACAAGCAACACTGCAAATGGTTGCGCCCgg  <  1:13580063/35‑1 (MQ=255)
                                   |                                  
GGGGATCATGCACGCCTTTATCGCCCTCGGGGCGGTAAAACAAGCAACACTGCAAATGGTTGCGCCCGG  >  REL606/756475‑756543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.