New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3630716NA (NA)79 (0.770) 38/48 NT NA intergenic (‑171/‑305) ldrD/yhjV toxic polypeptide, small/predicted transporter
?REL606 = 3652533 NA (NA)noncoding (1443/1443 nt) IS150 repeat region

CCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGC  >  REL606/3630713‑3630750
   |                                  
ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt     <  1:964939/35‑1 (MQ=32)
ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt     >  1:10131564/1‑35 (MQ=32)
ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt     <  1:1062599/35‑1 (MQ=32)
ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt     >  1:11035140/1‑35 (MQ=32)
ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt     >  1:12028647/1‑35 (MQ=32)
ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt     >  1:8503643/1‑35 (MQ=32)
ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt     >  1:16448195/1‑35 (MQ=32)
ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt     <  1:3455300/35‑1 (MQ=32)
ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt     <  1:19881381/35‑1 (MQ=32)
 cGGAACCTTTCCGGCTTGCCGCTGATTCTACGAtt    >  1:10508159/1‑35 (MQ=35)
 cGGAACCTTTCCGGCTTGCCGCTGATTCTACGAtt    <  1:14470079/35‑1 (MQ=35)
  ggAACCTTTCCGGCTTGCCGCTTATTCTACGATTg   >  1:4566600/1‑35 (MQ=255)
  ggAACCTTTCCGGCTTGCCGCTGATTCTACGATTg   <  1:8903253/35‑1 (MQ=38)
  ggAACCTTTCCGGCTTGCCGCTGATTCTACGATTg   >  1:554537/1‑35 (MQ=38)
  ggAACCTTTCCGGCTTGCCGCTGATTCTACGATTg   >  1:5263798/1‑35 (MQ=38)
  ggAACCTTTCCGGCTTGCCGCTGATTCTACGATTg   >  1:16807467/1‑35 (MQ=38)
  ggAACCTTTCCGGCTTGCCGCTGATTCTACGATTg   <  1:10073305/35‑1 (MQ=38)
  ggAACCTTTCCGGCTTGCCGCTGATTATACGATTg   <  1:7915725/35‑1 (MQ=255)
   gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc  >  1:18506456/1‑35 (MQ=40)
   gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc  <  1:20231119/35‑1 (MQ=40)
   gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc  <  1:3032928/35‑1 (MQ=40)
   gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc  <  1:18074781/35‑1 (MQ=40)
   gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc  <  1:3772692/35‑1 (MQ=40)
   gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc  >  1:15567326/1‑35 (MQ=40)
   gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc  >  1:12761350/1‑35 (MQ=40)
   gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc  >  1:7168521/1‑35 (MQ=40)
   gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc  >  1:8372498/1‑35 (MQ=40)
   gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc  <  1:12555258/35‑1 (MQ=40)
   gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc  >  1:11742752/1‑35 (MQ=40)
   |                                  
CCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGC  >  REL606/3630713‑3630750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.