New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 505984 =28 (0.270)12 (0.130) 6/42 NT 16.8% coding (808/816 nt) allR DNA‑binding transcriptional repressor
?REL606 2525727 = 94 (1.050)coding (4/1350 nt) hyfD hydrogenase 4 membrane subunit

CGCTCCGCAGAGCGGGATGCGACAGACATTATGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/506020‑505984
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgGGGGTTTTGTTCGCCGCACTGACCACGCTGTGCA  >  REL606/2525727‑2525760
                                                                       
CGCTCCGCAGAGCGGGATGCGACAGACATTATGGA                                      >  1:9391750/1‑35
CGCTCCGCAGAGCGGGATGCGACAGACATTATGGA                                      >  1:7366013/1‑35
CGCTCCGCAGAGCGGGATGCGACAGACATTATGGA                                      >  1:6864845/1‑35
CGCTCCGCAGAGCGGGATGCGACAGACATTATGGA                                      >  1:17444745/1‑35
CGCTCCGCAGAGCGGGATGCGACAGACATTATGGA                                      >  1:14736025/1‑35
 GCTCCGCAGAGCGGGATGCGACAGACATTATGGAT                                     >  1:8680514/1‑35
 GCTCCGCAGAGCGGGATGCGACAGACATTATGGAT                                     >  1:6763299/1‑35
 GCTCCGCAGAGCGGGATGCGACAGACATTATGGAT                                     >  1:6055137/1‑35
 GCTCCGCAGAGCGGGATGCGACAGACATTATGGAT                                     >  1:5943802/1‑35
 GCTCCGCAGAGCGGGATGCGACAGACATTATGGAT                                     >  1:3547581/1‑35
  CTCCGCAGAGCTGGATGCGACAGACATTATGGATG                                    >  1:12254385/1‑35
  CTCCGCAGAGCGGGATGCGACAGACATTATGGATG                                    >  1:12038992/1‑35
  CTCCGCAGAGCGGGATGCGACAGACATTATGGATG                                    >  1:8224163/1‑35
  CTCCGCAGAGCGGGATGCGACAGACATTATGGATG                                    >  1:4115799/1‑35
  CTCCGCAGAGCGGGATGCGACAGACATTATGGATG                                    >  1:18536416/1‑35
   TCCGCAGAGCGTGATGCGACAGACATTATGGATGG                                   >  1:1696120/1‑35
   TCCGCAGAGCGGGATGCGACAGACATTATGGATGG                                   >  1:288511/1‑35
    CCGCAGAGCGGGATGCGACAGACATTATGGATGGG                                  >  1:17086068/1‑35
    CCGCAGAGCGGGATGCGACAGACATTATGGATGGG                                  >  1:11743136/1‑35
     CGCAGAGCGGGATGCGACAGACATTATGGATGGGc                                 >  1:18957142/1‑34
     CGCAGAGCGGGATGCGACAGACATTATGGATGGGG                                 >  1:10273900/1‑35
      GCAGAGCGGGATGCGACAGACATTATGGATGGGGc                                >  1:13251042/1‑34
      GCAGAGCGGGATGCGACAGACATTATGGATGGGGG                                >  1:3523611/1‑35
       CAGAGCGGGATGCGACAGACATTATGGATGGGGtt                               >  1:15337725/1‑33
       CAGAGCGGGATGCGACAGACATTATGGATGGGGGT                               >  1:17307965/1‑35
        AGAGCGGGATGCGACAGACATTATGGATGGGGGTT                              >  1:12148317/1‑35
         GAGCGGGATGCGACAGACATTATGGATGGGGTTTg                             >  1:5085824/1‑34
         GAGCGGGATGCGACAGACATTATGGATGGGGTTTT                             >  1:14446872/1‑35
         GAGCGGGATGCGACAGACATTATGGATGGGGGTTc                             >  1:5809194/1‑34
          AGCGGGATGCGACAGACATTATGGATGGGGGTTTT                            >  1:11001147/1‑35
          AGCGGGATGCGACAGACATTATGGATGGGGGTTTT                            >  1:10946807/1‑35
          AGCGGGATGCGACAGACATTATGGATGGGGGTTTT                            >  1:12910844/1‑35
           GCGGGATGCGACAGACATTATGGATGGGGGTTTTG                           >  1:15032790/1‑35
            CGGGATGCGACAGACATTATGGATGGGGGTTTTGT                          >  1:3006655/1‑35
            CGGGATGCGACAGACATTATGGATGGGGGTTTAGT                          >  1:3594940/1‑35
              GGATGCGACAGACATTATGGATGGGGGTTTTGTTC                        >  1:4787997/1‑35
                 TGCGACAGACATTATGGATGGGGGTTTTGTTCcca                     >  1:5850326/1‑32
                                  ATGGGGGTTTTGTTCGCCGCACTGACCACGCTGgg    >  1:154244/1‑33
                                  ATGGGGGTTTTGTTCGCCGCACTGACCACGCTGTG    >  1:15838230/1‑35
                                  ATGGGGGTTTTGTTCGCCGCACTGACCACGCTGTG    <  1:10447813/35‑1
                                  ATGGGGGTTTTGTTCGCCGCACTGACCACGCTGTG    <  1:12560634/35‑1
                                  ATGGGGGTTTTGTTCGCCGCACTGACCACGCTGTG    >  1:16979533/1‑35
                                  ATGGGGGTTTTGTTCGCCGCACTGACCACGCTGTG    >  1:18201691/1‑35
                                  ATGGGGGTTTTGTTCGCCGCACTGACCACGCTGTG    >  1:4809163/1‑35
                                  ATGGGGGTTTTGTTCGCCGCACTGACCACGCTGTG    <  1:4121553/35‑1
                                   TGGGGGTTTTGTTCGCCTCACTGACCACGCTGTGC   >  1:14366095/1‑35
                                   TGGGGGTTTTGTTCGCCGCACTGACCACGCTGTGC   <  1:3352591/35‑1
                                   TGGGGGTTTTGTTCGCCGCACTGACCACGCTGTGC   <  1:10297999/35‑1
                                   TGGGGGTTTTGTTCGCCGCACTGACCACGCTGTGC   <  1:15913968/35‑1
                                    GGGGGTTTTGTTCGCCGCACTGACCATGCTGTGCA  >  1:5956644/1‑35
                                    GGGGGTTTTGTTCGCCGCACTGACCACGCTGTGCA  >  1:16769951/1‑35
                                    GGGGGTTTTGTTCGCCGCACTGACCACGCTGTGCA  <  1:1420543/35‑1
                                                                       
CGCTCCGCAGAGCGGGATGCGACAGACATTATGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/506020‑505984
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgGGGGTTTTGTTCGCCGCACTGACCACGCTGTGCA  >  REL606/2525727‑2525760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.