New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 932696 =61 (0.590)12 (0.180) 3/32 NT 18.9% coding (59/696 nt) aqpZ aquaporin Z
?REL606 = 3040633 62 (0.910)coding (654/810 nt) pppA bifunctional prepilin leader peptidase/ methylase

Only 100 of 120 total aligned reads displayed.

TTCCGGGAAGCCTGCGGCCAGTACAGCACTACCACAGCCACCAAAAACAAGCCAGAAAGTACCAAAACA  >  REL606/932662‑932730
                                  |                                  
ttCCGGGAAGCCTGCGGCCAGTACAGCACTACcac                                    >  1:16439124/1‑35 (MQ=255)
ttCCGGGAAGCCTGCGGCCAGTACAGCACTACcac                                    >  1:5324333/1‑35 (MQ=255)
  ccGGGAAGCCTGCGGCCAGTACAGCACTACCACAg                                  >  1:3324093/1‑35 (MQ=255)
  ccGGGAAGCCTGCGGCCAGTACAGCACTACCACAg                                  >  1:4954218/1‑35 (MQ=255)
  ccGGGAAGCCTGAGGCCAGTACAGCCCTACCACAg                                  <  1:10701347/35‑1 (MQ=38)
   cGGGAAGCCTGCGGCCAGTACAGCACTACCACAGc                                 >  1:13392902/1‑35 (MQ=255)
    gggAAGCCTGCGGCCAGTACAGCACTACCACAGcc                                >  1:6895898/1‑35 (MQ=255)
     ggAAGCCTGCGGCCAGTACAGCACTACCCCACccc                               >  1:7318546/1‑34 (MQ=25)
     ggAAGCCTGCGGCCAGTACAGCACTACCACAGcca                               >  1:4234455/1‑35 (MQ=255)
      gAAGCCTGCGGCCAGTACAGCACTACCACAGccac                              >  1:11467072/1‑35 (MQ=255)
      aacgttgggcagtgataacgcccccaccCAGccac                              <  1:8158929‑M1/7‑1 (MQ=255)
      aacgttgggcagtgataacgcccccaccCAGccac                              <  1:7591460‑M1/7‑1 (MQ=255)
       acgttgggcagtgataacgcccccaccTAGccacc                             <  1:13006885‑M1/8‑1 (MQ=255)
       acgttgggcagtgataacgcccccaccCAGccacc                             <  1:17123334‑M1/8‑1 (MQ=255)
       aaGCCTGCGGCCAGTACAGCACTACCACAGccacc                             >  1:15820852/1‑35 (MQ=255)
       aaGCCTGCGGCCAGTACAGCACTACCACAGccacc                             >  1:7215645/1‑35 (MQ=255)
       aaGCCTGCGGCCAGTACAGCACTACCACAGccacc                             >  1:7422194/1‑35 (MQ=255)
        aGCCTGCGTCCAGTACAGCACTACCACAGccacca                            >  1:10322136/1‑35 (MQ=255)
        aGCCTGCGGCCAGTACAGCACTACCACAGccacca                            >  1:11382258/1‑35 (MQ=255)
         gcatGCGGCCAGTACAGCACTACCACAGCCACCaa                           >  1:3228492/4‑35 (MQ=255)
         gCCTGCGGCCAGTACAGCACTACCACAGCCACCaa                           >  1:12703533/1‑35 (MQ=255)
         gCCTGCGGCCAGTACAGCACTACCACAGCCACCaa                           >  1:19415568/1‑35 (MQ=255)
          ccTGCGGCCAGTACAGCACTACCACAGCCACCaaa                          >  1:6785158/1‑35 (MQ=255)
          ccTGCGGCCAGTACAGCACTACCACAGCCACCaaa                          >  1:8902495/1‑35 (MQ=255)
           cTGCGGCCAGTACAGCACTACCACAGCCACCaaaa                         >  1:13025087/1‑35 (MQ=255)
           cTGCGGCCAGTACAGCACTACCACAGCCACCaaaa                         >  1:1101810/1‑35 (MQ=255)
           cTGCGGCCAGTACAGCACTACCACAGCCACCaaaa                         >  1:11408547/1‑35 (MQ=255)
             gCGGCCAGTACAGCACTACCACAGCCACCAAAAAc                       >  1:11059028/1‑35 (MQ=255)
               ggCCAGTACATCACTACCACAGCCACCAAAAACaa                     >  1:18054194/1‑35 (MQ=255)
               ggCCAGTACAGCACTACCACAGCCACCAAAAACaa                     >  1:3315930/1‑35 (MQ=255)
               ggCCAGTACAGCACTACCACAGCCACCAAAAACaa                     >  1:20393143/1‑35 (MQ=255)
               ggCCAGTACAGCACTACCACAGCCACCAAAAACaa                     >  1:12173356/1‑35 (MQ=255)
               ggCCAGTACAGCACTACCACAGCCACCAAAAACaa                     >  1:11987377/1‑35 (MQ=255)
               ggCCAGTACAGCACTACCACAGCCACCAAAAACaa                     >  1:20540106/1‑35 (MQ=255)
               ggCCAGTACAGCACTACCACAGCCACCAAAAACaa                     >  1:14881850/1‑35 (MQ=255)
                 ccAGTACAGCACTACTACAGCCACCAAAAACaatc                   >  1:12986610/1‑33 (MQ=38)
                 ccAGTACAGCACTACCACAGCCACCAAAAACAAGc                   >  1:15044275/1‑35 (MQ=255)
                  cAGTACAGCACTACCACAGCCACCAAAAACAAGcc                  >  1:1453842/1‑35 (MQ=255)
                  cAGTACAGCACTACCACAGCCACCAAAAACAAGcc                  >  1:20531790/1‑35 (MQ=255)
                  cAGTACAGCACTACCACAGCCACCAAAAACAAGcc                  >  1:19556859/1‑35 (MQ=255)
                   aGTACAGCACTACCACAGCCACCAAAAACAAGCCa                 >  1:7201645/1‑35 (MQ=255)
                   aGTACAGCACTACCACAGCCACCAAAAACAAGCCa                 >  1:6032411/1‑35 (MQ=255)
                   aGTACAGCACTACCACAGCCACCAAAAACAAGCCa                 >  1:13082506/1‑35 (MQ=255)
                   aGTACAGCACTACCACAGCCACCAAAAACAAGCCa                 >  1:15517179/1‑35 (MQ=255)
                   aGTACAGCACTACCACAGCCACCAAAAACAAGCCa                 >  1:5773064/1‑35 (MQ=255)
                    gTACAGCACTACCACAGCCACCAAAAACAAGCCAg                >  1:1627676/1‑35 (MQ=255)
                     tACAGCACTACCACAGCCACCAAAAACAAGCCAGa               >  1:18844584/1‑35 (MQ=255)
                      aCAGCACTACCACAGCCACCAAAAACAAGCCAGaa              >  1:874647/1‑35 (MQ=255)
                      aCAGCACTACCACAGCCACCAAAAACAAGCCAGaa              >  1:35741/1‑35 (MQ=255)
                      aCAGCACTACCACAGCCACCAAAAACAAGCCAGaa              >  1:18743711/1‑35 (MQ=255)
                      aCAGCACTACCACAGCCACCAAAAACAAGCCAGaa              >  1:15432874/1‑35 (MQ=255)
                      aCAGCACTACCACAGCCACCAAAAACAAGCCAGaa              >  1:1779561/1‑35 (MQ=255)
                      aCAGCACTACCACAGCCACCAAAAACAAGCCAGaa              >  1:1731906/1‑35 (MQ=255)
                      aCAGCACTACCACAGCCACCAAAAACAAGCCAGaa              >  1:16541666/1‑35 (MQ=255)
                      aCAGCACTACCACAGCCACCAAAAACAAGCCAGaa              >  1:16207490/1‑35 (MQ=255)
                       cAGCACTACCACAGCCACCAAAAACAAGCCAGaaa             >  1:18010912/1‑35 (MQ=255)
                       cAGCACTACCACAGCCACCAAAAACAAGCCAGaaa             >  1:4907995/1‑35 (MQ=255)
                        aGCACTACCACAGCCACCAAAAACAAGCCAGAAAg            >  1:15542951/1‑35 (MQ=255)
                         gCACTACCACAGCCACCAAAAACAGGCCAGAAAGt           >  1:6288154/1‑35 (MQ=255)
                         gCACTACCACAGCCACCAAAAACAAGCCAGAAAGt           >  1:18732326/1‑35 (MQ=255)
                         cccccccccCAGCCACCAAAAACAAGCCAGAAAGt           >  1:17952655‑M1/10‑35 (MQ=255)
                         cccccccccCAGCCACCAAAAACAAGCCAGAAAGt           >  1:7412818‑M1/10‑35 (MQ=255)
                          ccccccccCAGCCACCAAAAACAAGCCAGAAAGTa          >  1:5924314‑M1/9‑35 (MQ=255)
                          cACTACCACAGCCACCAAAAACAAGCCAGAAAgat          >  1:3637284/1‑33 (MQ=255)
                          cACTACCACAGCCACCAAAAACAAGCCAGAAAgat          >  1:10412848/1‑33 (MQ=255)
                          cACTACCACAGCCACCAAAAACAAGCCAGAAAGTa          >  1:3484161/1‑35 (MQ=255)
                          cACTACCACAGCCACCAAAAACAAGCCAGAAAGTa          >  1:8056715/1‑35 (MQ=255)
                          cACTACCACAGCCACCAAAAACAAGCCAGAAAGTa          >  1:11976248/1‑35 (MQ=255)
                           cccccccCAGCCACCAAAAACAAGCCAGAAAGTAc         >  1:20175815‑M1/8‑35 (MQ=255)
                           cccccccCAGCCACCAAAAACAAGCCAGAAAGTAc         >  1:15965649‑M1/8‑35 (MQ=255)
                           cccccccCAGCCACCAAAAACAAGCCAGAAAGTAc         >  1:4724000‑M1/8‑35 (MQ=255)
                            ccccccCAGCCACCAAAAACAAGCCAGAAAGTAcc        >  1:13849754‑M1/7‑35 (MQ=255)
                            ccccccCAGCCACCAAAAACAAGCCAGAAAGTAcc        >  1:20118680‑M1/7‑35 (MQ=255)
                            ccccccCAGCCACCAAAAACAAGCCAGAAAGTAcc        >  1:12108399‑M1/7‑35 (MQ=255)
                            ccccccCAGCCACCAAAAACAAGCCAGAAAGTAcc        >  1:17321129‑M1/7‑35 (MQ=255)
                            cTACCACAGCCACCAAAAACAAGCCAGAAAGTAcc        >  1:6072360/1‑35 (MQ=255)
                             tACCACAGCCACCAAAAACAAGCCAGAAAGTACCa       >  1:10692242/1‑35 (MQ=255)
                             tACCACAGCCACCAAAAACAAGCCAGAAAGTACCa       >  1:1990858/1‑35 (MQ=255)
                             cccccCAGCCACCAAAAACAAGCCAGAAAGTACCa       >  1:10831051‑M1/6‑35 (MQ=255)
                              ccccCAGCCACCAAAAACAAGCCAGAAAGTACCaa      >  1:7737844‑M1/5‑35 (MQ=255)
                              ccccCAGCCACCAAAAACAAGCCAGAAAGTACCaa      >  1:2580358‑M1/5‑35 (MQ=255)
                              ccccCAGCCACCAAAAACAAGCCAGAAAGTACCaa      >  1:18576239‑M1/5‑35 (MQ=255)
                              aCCACAGCCACCAAAAACAAGCCAGAAAGTACCaa      >  1:8625409/1‑35 (MQ=255)
                              aCCACAGCCACCAAAAACAAGCCAGAAAGTACCaa      >  1:190239/1‑35 (MQ=255)
                              aCCACAGCCACCAAAAACAAGCCAGAAAGTACCaa      >  1:18915969/1‑35 (MQ=255)
                              aCCACAGCCACCAAAAACAAGCCAGAAAGTACCaa      >  1:50358/1‑35 (MQ=255)
                              aCCACAGCCACCAAAAACAAGCCAGAAAGTACCaa      >  1:18443811/1‑35 (MQ=255)
                               cccCAGCCGCCAAAAACAAGCCAGAAAGTACCaaa     >  1:13219171‑M1/4‑35 (MQ=255)
                               cccCAGCCACCAAAAACAAGCCAGAAAGTACCaaa     >  1:13503916‑M1/4‑35 (MQ=255)
                               ccACAGCCACCAAAAACAAGCCAGAAAGTACCaaa     >  1:1786690/1‑35 (MQ=255)
                               ccACAGCCACCAAAAACAAGCCAGAAAGTACCaaa     >  1:4224415/1‑35 (MQ=255)
                               ccACAGCCACCAAAAACAAGCCAGAAAGTACCaaa     >  1:1425125/1‑35 (MQ=255)
                                ccCAGCCACCAAAAACAAGCCAGAAAGTACCaaaa    >  1:15622337‑M1/3‑35 (MQ=255)
                                cacaGCCACCAAAAACAAGCCAGAAAGTACCaaaa    >  1:5923845/1‑35 (MQ=255)
                                 cCAGCCACCAAAAACAAGCCAGAAAGTACCAAAAc   >  1:13569776‑M1/2‑35 (MQ=255)
                                 cCACCCACCAAAAACAAGCCAGAAAGTACCAAAAc   >  1:15182456‑M1/2‑35 (MQ=255)
                                 acaGCCACCAAAAACAAGCCAGAAAGTACCAAAAc   >  1:3819987/1‑35 (MQ=255)
                                  CAGCCACCAAAAACAAGCCAGAAAGTACCAAAACa  <  1:1197132‑M1/35‑1 (MQ=255)
                                  CAGCCACCAAAAACAAGCCAGAAAGTACCAAAACa  >  1:20492704‑M1/1‑35 (MQ=255)
                                  CACCCACCAAAAACAAGCCAGAAAGTACCAAAACa  >  1:3618165‑M1/1‑35 (MQ=255)
                                  |                                  
TTCCGGGAAGCCTGCGGCCAGTACAGCACTACCACAGCCACCAAAAACAAGCCAGAAAGTACCAAAACA  >  REL606/932662‑932730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.