New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 642994 | 84 (0.820) | 9 (0.110) | 4/38 | NT | 12.4% | intergenic (‑195/+14) | lipA/ybeF | lipoyl synthase/predicted DNA‑binding transcriptional regulator |
? | REL606 | 967183 = | 61 (0.750) | coding (423/591 nt) | ycaK | hypothetical protein |
Only 100 of 134 total aligned reads displayed.
GAGGAGACAAAGAATCATTTGTCCAGATGGGCTGGGAAAAAAATATAAGCGATTATTTAAAAAATATGT > REL606/967149‑967217 | tgccattttatcgttctgcgctgtgatctggctgg > 1:17960374‑M2/35‑35 (MQ=255) gaggagACAAAGAATCATTTGTCCAGATGGGCTgg > 1:10292901/1‑35 (MQ=255) gaggagACAAAGAATCATTTGTCCAGATGGGCTgg > 1:20354464/1‑35 (MQ=255) gaggagACAAAGAATCATTTGTCCAGATGGGCTgg < 1:16697019/35‑1 (MQ=255) gccattttatcgttctgcgctgtgatctggctggg > 1:17373698‑M2/34‑35 (MQ=255) aggagACAAAGAATCATTTTTCCAGATGGGCTggg > 1:1550860/1‑35 (MQ=255) aggagACAAAGAATCATTTGTCCAGATGNGCTggg < 1:516827/35‑1 (MQ=255) aggagACAAAGAATCATTTGTCCAGATGGGCTggg > 1:18850568/1‑35 (MQ=255) ggagACAAAGAATCATTTGTCCAGATGGGCTGGGa < 1:9062281/35‑1 (MQ=255) ggagACAAAGAATCATTTGTCCAGATGGGCTGGGa > 1:16558640/1‑35 (MQ=255) ggagACAAAGAATCATTTGTCCAGATGGGCTGGGa > 1:12552704/1‑35 (MQ=255) ggagACAAAGAATCATTTGTCCAGATGGGCTGGGa < 1:11661548/35‑1 (MQ=255) ggagACAAAGAATCATTTGTCCAGATGGGCTGGGa < 1:10198087/35‑1 (MQ=255) gtgaCAAAGAATCATTTGTCCAGATGGGCTGGGaa > 1:11640040/3‑35 (MQ=255) gagaCAAAGAATCATTTGTCCAGATGGGCTGGGaa < 1:329180/35‑1 (MQ=255) gagaCAAAGAATCATTTGTCCAGATGGGCTGGGaa < 1:12206346/35‑1 (MQ=255) cattttatcgttctgcgctgtgatctggctggaac > 1:14190145‑M2/32‑32 (MQ=255) agaCAAAGAATCATTTGTCCAGATGGGCTGGGaaa < 1:6666081/35‑1 (MQ=255) agaCAAAGAATCATTTGTCCAGATGGGCTGGGaaa < 1:16590636/35‑1 (MQ=255) agaCAAAGAATCATTTGTCCAGATGGGCTGGGaaa > 1:15326543/1‑35 (MQ=255) agaCAAAGAATCATTTGTCAAGATGGGCTGGGaaa < 1:10925526/35‑1 (MQ=255) tttatcgttctgcgctgtgatctggctgGGaaaaa > 1:4799175‑M2/29‑35 (MQ=255) aCAAAGAATCATTTGTCCAGATGGGCTGGGaaaaa < 1:8108818/35‑1 (MQ=255) aCAAAGAATCATTTGTCCAGATGGGCTGGGaaaaa < 1:14403321/35‑1 (MQ=255) ttatcgttctgcgctgtgatctggctgGTaaaaaa > 1:20525288‑M2/28‑35 (MQ=255) ttatcgttctgcgctgtgatctggctgGGaaaaaa > 1:703448‑M2/28‑35 (MQ=255) cAAAGAATCATTTGTCCAGATGGGCTGGGaaaaaa > 1:11217960/1‑35 (MQ=255) cAAAGAATCATTTGTCCAGATGGGCTGGGaaaaaa < 1:11523688/35‑1 (MQ=255) cAAAGAATCATTTGTCCAGATGGGCTGGGaaaaaa < 1:913342/35‑1 (MQ=255) cAAAGAATCATTTGTCCAGATGGGCTGGGaaaaaa < 1:12859040/35‑1 (MQ=255) aaaGAATCATTTGTCCAGATGGGCTGGGaaaaaaa < 1:20366208/35‑1 (MQ=255) atcgttctgcgctgtgatctggctgGGAAAAAAat > 1:3924247‑M2/26‑35 (MQ=255) aaGAATCATTTGTCCAGATGGGCTGGGAAAAAAat < 1:3599802/35‑1 (MQ=255) aaGAATCATTTGTCCAGATGGGCTGGGAAAAAAat < 1:20496572/35‑1 (MQ=255) aaGAATCATTTGTCCAGATGGGCTGGGAAAAAAat < 1:16742058/35‑1 (MQ=255) aaGAATCATTTGTCCAGATGGGCTGGGAAAAAAat > 1:2141480/1‑35 (MQ=255) aaGAATCATTTGTCAAGATGGGCTGGGAAAAAAat < 1:7811622/35‑1 (MQ=255) aGAATCATTTGTCCAGATGGGCTGGGaaaaaaaag > 1:19482425/1‑33 (MQ=255) gAATCATTTGTCCAGATGGGCTGGGAAAAAAatat < 1:15261962/35‑1 (MQ=255) gAATCATTTGTCCAGATGGGCTGGGAAAAAAatat > 1:17053162/1‑35 (MQ=255) gttctgcgctgtgatctggctgGGAAAaaaatttt > 1:16201907‑M2/23‑32 (MQ=255) aaTCATTTGTCCAGATGGGCTGGGAAAAAAAtata < 1:2256822/35‑1 (MQ=255) aaTCATTTGTCCAGATGGGCTGGGAAAAAAAtata > 1:4148370/1‑35 (MQ=255) aTCATTTGTCCAGATGGGCTGGGAAAAAAATATaa < 1:7189162/35‑1 (MQ=255) aTCATTTGTCCAGATGGGCTGGGAAAAAAATATaa < 1:15091881/35‑1 (MQ=255) cATTTGTCCAGATGGGCTGGGAAAAAAATATAAGc < 1:1599090/35‑1 (MQ=255) aTTTGTCCAGATGGGCTGGGAAAAAAATATAAGCg < 1:20516612/35‑1 (MQ=255) aTTTGTCCAGATGGGCTGGGAAAAAAATATAAGCg < 1:4701945/35‑1 (MQ=255) aTTTGTCCAGATGGGCTGGGAAAAAAATATAAGCg < 1:7901859/35‑1 (MQ=255) aTTTGTCCAGATGGGCTGGGAAAAAAATATAAGCg < 1:18819270/35‑1 (MQ=255) aTTTGTCCAGATGGGCTGGGAAAAAAATATAAGCg < 1:17833746/35‑1 (MQ=255) tttGTCCAGATGGGCTGGGAAAAAAATATAAGCGa < 1:9353151/35‑1 (MQ=255) tttGTCCAGATGGGCTGGGAAAAAAATATAAGCGa > 1:10441762/1‑35 (MQ=255) tttGTCCAGATGGGCTGGGAAAAAAATATAAGCGa < 1:17820879/35‑1 (MQ=255) tGTCCAGATGGGCTGGGAAAAAAATATAAGCGatt < 1:20327879/35‑1 (MQ=255) tGTCCAGATGGGCTGGGAAAAAAATATAAGCGatt > 1:5068945/1‑35 (MQ=255) gTCCAGATGGGCTGGGAAAAAAATATAAGCGatta < 1:29229/35‑1 (MQ=255) gTCCAGATGGGCTGGGAAAAAAATATAAGCGatta > 1:9891928/1‑35 (MQ=255) gTCCAGATGGGCTGGGAAAAAAATATAAGCGatta < 1:2346655/35‑1 (MQ=255) gTCCAGATGGGCTGGGAAAAAAATATAAGCGatta > 1:5997335/1‑35 (MQ=255) tCCAGATGGGCTGGGAAAAAAATATAAGCGattat > 1:15678871/1‑35 (MQ=255) tCCAGATGGGCTGGGAAAAAAATATAAGCGattat < 1:17959174/35‑1 (MQ=255) tCCAGATGGGCTGGGAAAAAAATATAAGCGattat > 1:10841472/1‑35 (MQ=255) tCCAGATGGGCTGGGAAAAAAATATAAGCGattat < 1:13519459/35‑1 (MQ=255) tCCAGATGGGCTGGGAAAAAAATATAAGCGattat < 1:15628963/35‑1 (MQ=255) ccAGATGTGCTGGGAAAAAAATATAAGCGattatt > 1:16010292/1‑35 (MQ=255) ccAGATGGGCTGGGAAAAAAATATAAGCGattatt < 1:6021024/35‑1 (MQ=255) cAGATGGGCTGGGAAAAAAATATAAGCGATTAttt < 1:6818804/35‑1 (MQ=255) cAGATGGGCTGGGAAAAAAATATAAGCGATTAttt < 1:6697527/35‑1 (MQ=255) cAGATGGGCTGGGAAAAAAATATAAGCGATTAttt < 1:16933796/35‑1 (MQ=255) aGATGGGCTGGGAAAAAAATATAAGCGATTATTTa < 1:1589757/35‑1 (MQ=255) aGATGGGCTGGGAAAAAAATATAAGCGATTATTTa < 1:7340606/35‑1 (MQ=255) aGATGGGCTGGGAAAAAAATATAAGCGATTATTTa < 1:4889949/35‑1 (MQ=255) aGATGGGCTGGGAAAAAAATATAAGCGATTATTTa < 1:5138899/35‑1 (MQ=255) gATGGGCTGGGAAAAAAATATAAGCGATTATTTaa < 1:11196111/35‑1 (MQ=255) gATGGGCTGGGAAAAAAATATAAGCGATTATTTaa > 1:9407129/1‑35 (MQ=255) gATGGGCTGGGAAAAAAATATAAGCGATTATTTaa < 1:8609075/35‑1 (MQ=255) gATGGGCTGGGAAAAAAATATAAGCGATTATTTaa > 1:5198279/1‑35 (MQ=255) aTGGGCTGGGAAAAAAATATAAGCGATTATTTaaa > 1:13837222/1‑35 (MQ=255) aTGGGCTGGGAAAAAAATATAAGCGATTATTTaaa < 1:5186148/35‑1 (MQ=255) aTGGGCTGGGAAAAAAATATAAGCGATTATTTaaa < 1:5551619/35‑1 (MQ=255) aTGGGCTGGGAAAAAAATATAAGCGATTATTTaaa > 1:12349168/1‑35 (MQ=255) tGGGCTGGGAAAAAAATATAAGCGATTATTTaaaa > 1:1469364/1‑35 (MQ=255) tGGGCTGGGAAAAAAATATAAGCGATTATTTaaaa < 1:2011981/35‑1 (MQ=255) gggCTGGGAAAAAAATATAAGCGATTATTTaaaaa > 1:9912634/1‑35 (MQ=255) gggCTGGGAAAAAAATATAAGCGATTATTTaaaaa > 1:3235768/1‑35 (MQ=255) gggCTGGGAAAAAAATATAAGCGATTATTTaaaaa > 1:16930805/1‑35 (MQ=255) gggCTGGGAAAAAAATATAAGCGATTATTTaaaaa < 1:16692206/35‑1 (MQ=255) gggCTGGGAAAAAAATATAAGCGATTATTTaaaaa > 1:11364786/1‑35 (MQ=255) ggctgGGAAAAAAATATAAGCGATTATTTaaaaaa < 1:2619710‑M2/30‑1 (MQ=255) ggctgGGAAAAAAATATAAGCGATTATTTaaaaaa > 1:19133477‑M2/6‑35 (MQ=255) ggctgGGAAAAAAATATAAGCGATTATTTaaaaaa > 1:18608557‑M2/6‑35 (MQ=255) gctgGGAAAAAAATATAAGCGATTATTTAAAAAat > 1:5182388‑M2/5‑35 (MQ=255) gctgGGAAAAAAATATAAGCGATTATTTAAAAAat < 1:12946803‑M2/31‑1 (MQ=255) gctgGGAAAAAAATATAAGCGATTATTTAAAAAat > 1:10491770‑M2/5‑35 (MQ=255) ctgGGAAAAAAATATAAGCGATTATTTAAAAAata < 1:14802851‑M2/32‑1 (MQ=255) tgGGAAAAAAATATAAGCGATTATTTAAAAAatat < 1:46747‑M2/33‑1 (MQ=255) tgGGAAAAAAATATAAGCGATTATTTAAAAAatat > 1:3036409‑M2/3‑35 (MQ=255) tgGGAAAAAAATATAAGCGATTATTTAAAAAatat < 1:9418802‑M2/33‑1 (MQ=255) ggAAAAAAATATAAGCGATTATTTAAAAAATAtgt > 1:13898978/1‑35 (MQ=255) | GAGGAGACAAAGAATCATTTGTCCAGATGGGCTGGGAAAAAAATATAAGCGATTATTTAAAAAATATGT > REL606/967149‑967217 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |