New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 790656 =71 (0.690)5 (0.070) 3/34 NT 9.7% coding (88/186 nt) ECB_00731 conserved hypothetical protein
?REL606 1598222 = 43 (0.590)coding (459/1461 nt) ydfI predicted mannonate dehydrogenase

Only 100 of 106 total aligned reads displayed.

CCTCAACAATCACCCCTGTTGCTGTTTTCGGCTGGTGGGGATTTTGCACGTCGGCAGCGACCATCGGG  >  REL606/1598188‑1598255
                                   |                                 
ccTCAACAATCACCCCTGTTGCTGTTTTCGGCtgg                                   <  1:9576127/35‑1 (MQ=255)
ccTCAACAATCACCCCTGTTGCTGTTTTCGGCtgg                                   <  1:7446978/35‑1 (MQ=255)
ccTCAACAATCACCCCTGTTGCTGTTTTCGGCtgg                                   <  1:13314274/35‑1 (MQ=255)
ccTCAACAATCACCCCTGTTGCTGTTTTCGGCtgg                                   <  1:20089729/35‑1 (MQ=255)
 gcatttcatcgataacttttggcgtcatcggctgg                                   >  1:4689733‑M2/35‑35 (MQ=255)
 cTCAACAATCACCCCTGTTGCTGTTTTCGGCtggt                                  <  1:15580710/35‑1 (MQ=255)
 cTCAACAATCACCCCTGTTGCTGTTTTCGGCtggt                                  <  1:12161589/35‑1 (MQ=255)
 cTCAACAATCACCCCTGTTGCTGTTTTCGGCtggg                                  >  1:4733319/1‑34 (MQ=255)
 cTCAACAATCACCCCTGTTGCTGTTTTCGGCtggg                                  >  1:13189264/1‑34 (MQ=255)
 cTCAACAATCACCCCTGTTGCTGTTTTCGGCtggg                                  >  1:12871048/1‑34 (MQ=255)
  tCAACAATCACCCCTGTTGCTGTTTTCGGCtggtg                                 <  1:8220176/35‑1 (MQ=255)
  tCAACAATCACCCCTGTTGCTGTTTTCGGCtgggg                                 >  1:12211670/1‑33 (MQ=255)
   caacaaTCACCCCTGTTGCTGTTTTCGGCtggggg                                >  1:16061103/1‑35 (MQ=255)
   atttcatcgataacttttggcgtcatcggctggtg                                 >  1:55186‑M2/33‑35 (MQ=255)
   atttcatcgataacttttggcgtcatcggctgggg                                 >  1:12782306‑M2/33‑33 (MQ=255)
   atttcatcgataacttttggcgtcatcggctgggg                                 >  1:8541351‑M2/33‑33 (MQ=255)
   atttcatcgataacttttggcgtcatcggctgggg                                 >  1:15803974‑M2/33‑33 (MQ=255)
   atttcatcgataacttttggcgtcatcggctggcg                                 >  1:6989929‑M2/33‑33 (MQ=255)
    tttcatcgataacttttggcgtcatcggctggtgg                                >  1:3311714‑M2/32‑35 (MQ=255)
    tttcatcgataacttttggcgtcatcggctggtgg                                >  1:16360882‑M2/32‑35 (MQ=255)
    aacaaTCACCCCTGTTGCTGTTTTCGGCTGGTggg                               <  1:15527808/35‑1 (MQ=255)
    aacaaTCACCCCTGTTGCTGTTTTCGGCTGGGggg                               >  1:14070763/1‑35 (MQ=255)
    aacaaTCACCCCTGTTGCTGTTTTCGGCTGGGggg                               >  1:4756541/1‑35 (MQ=255)
    aacaaTCACCCCTGTCGCTGTTTTCGGCTGGGggg                               >  1:16635790/1‑35 (MQ=38)
     ttcatcgataacttttggcgtcatcggctggtgcg                               >  1:17650293‑M2/31‑33 (MQ=255)
     acaaTCACCCCTGTTGCTGTTTTTGGCTGGGgggg                              >  1:623112/1‑35 (MQ=37)
     acaaTCACCCCTGTTGCTGTTTTCGGCTGGTgggg                              <  1:2274539/35‑1 (MQ=255)
     acaaTCACCCCTGTTGCTGTTTTCGGCTGGGgggg                              >  1:8581379/1‑35 (MQ=255)
      tcatcgataacttttggcgtcatcggctgGtgggc                              >  1:10834876‑M2/30‑34 (MQ=255)
      tcatcgataacttttggcgtcatcggctgGggggc                              >  1:12169571‑M2/30‑34 (MQ=255)
      tcatcgataacttttggcgtcatcggctgGGgggg                              >  1:13371507‑M2/30‑35 (MQ=255)
      caaTCACCCCTGTTGCTGTTTTCGGCTGGGggggg                             >  1:11808008/1‑34 (MQ=255)
       catcgataacttttggcgtcatcggctgGTGGGGa                             >  1:6573006‑M2/29‑35 (MQ=255)
       aaTCACCCCTGTTGCTGTTTTCGGCTGGGgggggg                            >  1:13719478/1‑33 (MQ=37)
       aaTCACACCTGTTGCTGTTTTCGGCTGGTGGGGAt                            <  1:13158460/35‑1 (MQ=255)
        atcgataacttttggcgtcatcggctggtgggtcc                            >  1:14827760‑M2/28‑32 (MQ=255)
        atcgataacttttggcgtcatcggctggtgggggt                            >  1:2069212‑M2/28‑33 (MQ=255)
        atcgataacttttggcgtcatcggctggtgggccg                            >  1:7169365‑M2/28‑32 (MQ=255)
        atcgataacttttggcgtcatcggctgGTGGGGAt                            >  1:3107425‑M2/28‑35 (MQ=255)
        aTCACCCCTGTTGCTGTTTTCGGCTGGGggggggt                           >  1:11929563/1‑32 (MQ=37)
        aTCACCCCTGTTGCTGTTTTCGGCTGGGGGGGGtt                           >  1:14803063/1‑35 (MQ=37)
        aTCACCACTGTTGCTGTTTTCGGCTGGTGGGGAtt                           <  1:13842342/35‑1 (MQ=255)
         tcgataacttttggcgtcatcggctgGTGGGCata                           >  1:7178786‑M2/27‑34 (MQ=255)
         tCACCCCTGTTGCTGTTTTCGGCTGGTGGGGAttt                          <  1:16250320/35‑1 (MQ=255)
          cACCCCTGTTGCTGTTTTCGGCTGGTGGGGAtttt                         <  1:932677/35‑1 (MQ=255)
          cACCCATGTTGCTGTTTTCGGCTGGTGGGGAtttt                         <  1:3248683/35‑1 (MQ=255)
           aCCCCTGTTGCTGTTTTCGGCTGGGTGGGGTtttt                         >  1:7685497/1‑35 (MQ=25)
           aCCCCTGTTGCTGTTTTCGGCTGGTGGGGATTTTg                        <  1:7055315/35‑1 (MQ=255)
            ccccTGTTGCTGTTTTCGGCTGGTGGGGATTTTGc                       <  1:390813/35‑1 (MQ=255)
            ccccTGTTGCTGTTTTCGGCTGGTGGGGATTTTGc                       <  1:14610772/35‑1 (MQ=255)
            ccccTGTTGCTGTTTTCGGCTGGTGGGGATTTTGc                       <  1:4590425/35‑1 (MQ=255)
             cccTGTTGCTGTTTTCGGCTGGGGGGGGtttttta                      >  1:17477312/1‑32 (MQ=25)
              cgtGTTGCTGTTTTCGGCTGGTGGGGATTTTGCAc                     <  1:16940457/33‑1 (MQ=255)
              ccTGTTGCTGTTTTCGGCTGGTGGGGATTTTGCAc                     <  1:17904352/35‑1 (MQ=255)
              ccTGTTGCTGTTTTCGGCTGGTGGGGATTTTGCAc                     <  1:12109981/35‑1 (MQ=255)
               cTGTTGCTGTTTTCGGCTGGTGGGGATTTTGCACg                    <  1:19094104/35‑1 (MQ=255)
               cTGTTGCTGTTTTCGGCTGGTGGGGATTTTGCACg                    <  1:1788850/35‑1 (MQ=255)
               cTGTTGCTGTTTTCGGCTGGTGGGGATTTTGCACg                    <  1:12612518/35‑1 (MQ=255)
                tggtGCTGTTTTCGGCTGGTGGGGATTTTGCACGt                   <  1:18123756/32‑1 (MQ=255)
                tGTTGCTGTTTTCGGCTGGTGGGGATTTTGCACGt                   <  1:7363317/35‑1 (MQ=255)
                tGTTGCTGTTTTCGGCTGGTGGGGATTTTGCACGt                   <  1:261396/35‑1 (MQ=255)
                tGTTGCTGTTTTCGGCTGGTGGGGATTTTGCACGt                   <  1:16516194/35‑1 (MQ=255)
                  ttGCTGTTTTCGGCTGGTGGGGATTTTGCACGTCg                 <  1:4466161/35‑1 (MQ=255)
                  ttGCTGTTTTCGGCTGGTGGGGATTTTGCACGTCg                 <  1:5561629/35‑1 (MQ=255)
                   tGCTGTTTTCGGCTGGTGGGGATTTTGCACGTCgg                <  1:11105818/35‑1 (MQ=255)
                   tGCTGTTTTCGGCTAGTGGGGATTTTGCACGTCgg                <  1:17255001/35‑1 (MQ=255)
                    gCTGTTTTCGGCTGGTGGGGATTTTGCACGTCGGc               <  1:3568071/35‑1 (MQ=255)
                    gCTGTTTTCGGCTGGTGGGGATTTTGCACGTCGGc               <  1:7615023/35‑1 (MQ=255)
                    gCTGTTTTCGGCTGGTGGGGATTTTGCACGTCGGc               <  1:7932698/35‑1 (MQ=255)
                    gCTGTTTTCGGCTGGGGGGGGTTTTTTACGTCGGc               >  1:20451520/1‑35 (MQ=19)
                     cTGTTTTCGGCTGGTGGGGATTTTGCACGTCGGCa              <  1:20547975/35‑1 (MQ=255)
                     cTGTTTTCGGCTGGTGGGGATTTTGCACGTCGGCa              <  1:4742644/35‑1 (MQ=255)
                     cTGTTTTCGGCTGGTGGGGATTTTGCACGTCGGCa              <  1:10306732/35‑1 (MQ=255)
                     cTGTTTTCGGCTGGGGGGGGTTTTGCAAGGCgggt              >  1:5541753/1‑33 (MQ=16)
                      tGTTTTCGGCTGGTGGGGATTTTGCACGTCGGCAg             <  1:18773085/35‑1 (MQ=255)
                      tGTTTTCGGCTGGTGGGGATTTTGCACGTCGGCAg             <  1:12278522/35‑1 (MQ=255)
                       gTTTTCGGCTGGTGGGGATTTTGCACGTCGGCAGc            <  1:4078033/35‑1 (MQ=255)
                       gTTTTCGGCTGGTGGGGATTTTGCACGTCGGCAGc            <  1:9242765/35‑1 (MQ=255)
                       gTTTTCGGCGGGTGGGGATTTTGCACGTCGGCAGc            <  1:2743461/35‑1 (MQ=255)
                        ttttCGGCTGGTGGGGATTTTGCACGTCGGCAGCg           <  1:962566/35‑1 (MQ=255)
                          ttCGGCTGGTGGGGATTTTGCACGTCGGCAGCGAc         <  1:3562803/35‑1 (MQ=255)
                            tcggctgGTGGGGATTTTGCACGTCGGCAGCGAcc        <  1:19963831‑M2/28‑1 (MQ=255)
                              ggctgGTGGGGATTTTGCACGTCGGCAGCGACcac      >  1:17301248‑M2/6‑34 (MQ=255)
                              ggctgGTGGGGATTTTGCACGTCGGCAGCGACCAt      <  1:7428059‑M2/30‑1 (MQ=255)
                              ggctgGTGGGGATTTTGCACGTCGGCAGCGACCAt      <  1:17074790‑M2/30‑1 (MQ=255)
                              gCTGGTGGGGATTTTGCACGTCGGCAGCGGCCCTc     >  1:4180505/1‑35 (MQ=25)
                               gctgGTGGGGATTTTGCACGTCGGCAGGGACCATc     >  1:16812515‑M2/5‑35 (MQ=255)
                               gctgGTGGGGATTTTGCACGTCGGCAGCGACCATc     >  1:3097965‑M2/5‑35 (MQ=255)
                               gctgGTGGGGATTTTGCACGTCGGCAGCGACCATc     <  1:19501909‑M2/31‑1 (MQ=255)
                               gctgGTGGGGATTTTGCACGTCGGCAGCGACCATc     <  1:18121086‑M2/31‑1 (MQ=255)
                               gctgGTGGGGATTTTGCACGTCGGCAGCGACCATc     <  1:17084617‑M2/31‑1 (MQ=255)
                                ctgGTGGGGATTTTGCACGTCGGCAGCGACCATCg    <  1:11034346‑M2/32‑1 (MQ=255)
                                ctgGTGGGGATTTTGCACGTCGGCAGCGACCATCg    >  1:15924824‑M2/4‑35 (MQ=255)
                                  gGTGGGGATTTTGCACGTCGGCAGCGACCATCggg  >  1:1149448‑M2/2‑35 (MQ=255)
                                  gGTGGGGATTTTGCACGTCGGCAGCGACCATCggg  <  1:1279270‑M2/34‑1 (MQ=255)
                                  gGTGGGGATTTTGCACGTCGGCAGCGACCATCggg  <  1:9126259‑M2/34‑1 (MQ=255)
                                  gGTGGGGATTTTGCACGTCGGCAGCGACCATCggg  <  1:9070647‑M2/34‑1 (MQ=255)
                                  gGTGGGGATTTTGCACGTCGGCAGCGACCATCggg  <  1:8031811‑M2/34‑1 (MQ=255)
                                  gGTGGGGATTTTGCACGTCGGCAGCGACCATCggg  <  1:7183536‑M2/34‑1 (MQ=255)
                                  gGTGGGGATTTTGCACGTCGGCAGCGACCATCggg  >  1:7023805‑M2/2‑35 (MQ=255)
                                   |                                 
CCTCAACAATCACCCCTGTTGCTGTTTTCGGCTGGTGGGGATTTTGCACGTCGGCAGCGACCATCGGG  >  REL606/1598188‑1598255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.