New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 610886 =57 (0.550)19 (0.260) 4/34 NT 28.5% coding (485/858 nt) entB isochorismatase
?REL606 1306336 = 55 (0.760)intergenic (‑97/+274) cls/kch cardiolipin synthetase/voltage‑gated potassium channel

Only 100 of 107 total aligned reads displayed.

TGCCACCATAAACGGTTTAATATCGCGCATAAATGCGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/610926‑610886
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtcggGGGCGGGGGTATAATGACCATTCTGTTATTGCAT  >  REL606/1306336‑1306369
                                                                           
tcCCACCATAAACGGTTTAATATCGCGCATAAATG                                          <  1:10655623/33‑1
TGCCACCATAAACGGTTTAATATCGCGCATAAATG                                          >  1:3648468/1‑35
TGCCACCATAAACGGTTTAATATCGCGCATAAATG                                          <  1:18655009/35‑1
TGCCACCATAAACGGTTTAATATCGCGCATAAATG                                          >  1:16517406/1‑35
TGCCACCATAAACGGTTTAATATCGCGCATAAATG                                          >  1:13449508/1‑35
 GCCACCATAAACGGTTTAATATCGCGCATAAATGC                                         >  1:3568585/1‑35
 GCCACCATAAACGGTTTAATATCGCGCATAAATGC                                         <  1:4768338/35‑1
 GCCACCATAAACGGTTTAATATCGCGCATAAATGC                                         >  1:17983669/1‑35
 GCCACCATAAACGGTTTAATATCGCGCATAAATGC                                         <  1:7052864/35‑1
 GCCACCATAAACGGTTTAATATCGCGCATAAATGC                                         >  1:7337762/1‑35
 GCCACCATAAACGGTTTAATATCGCGCATAAATGC                                         >  1:11589150/1‑35
  CCACCATAAACTGTTTAATATCGCGCATAAATGCG                                        >  1:14148360/1‑35
  CCACCATAAACGGTTTAATATCGCGCATAAATGCG                                        <  1:956775/35‑1
  CCACCATAAACGGTTTAATATCGCGCATAAATGCG                                        <  1:8682641/35‑1
  CCACCATAAACGGTTTAATATCGCGCATAAATGCG                                        >  1:18936711/1‑35
  CCACCATAAACGGTTTAATATCGCGCATAAATGCG                                        <  1:5860687/35‑1
  CCACCATAAACGGTTTAATATCGCGCATAAATGCG                                        >  1:11016559/1‑35
  CCACCATAAACGGTTTAATATCGCGCATAAATGCG                                        >  1:13913865/1‑35
  CCACCATAAACGGTTTAATATCGCGCATAAATGCG                                        <  1:7379741/35‑1
   CACCATAAACGGTTTAATATCGCGCATAAATGCGT                                       >  1:17854859/1‑35
   CACCATAAACGGTTTAATATCGCGCATAAATGCGT                                       >  1:16740235/1‑35
   CACCATAAACGGTTTAATATCGCGCATAAATGCGT                                       <  1:143808/35‑1
   CACCATAAACGGTTTAATATCGCGCATAAATGCGT                                       >  1:7591909/1‑35
   CACCATAAACGGTTTAATATCGCGCATAAATGCGT                                       <  1:8668228/35‑1
    ACCATAAACGGTTTAATATCGCGCATAAATGCGTC                                      <  1:1221130/35‑1
    ACCATAAACGGTTTAATATCGCGCATAAATGCGTC                                      >  1:8985049/1‑35
    ACCATAAACGGTTTAATATCGCGCATAAATGCGTC                                      <  1:2031739/35‑1
    ACCATAAACGGTTTAATATCGCGCATAAATGCGTC                                      >  1:12298881/1‑35
    ACCATAAACGGTTTAATATCGCGCATAAATGCGTC                                      >  1:8585970/1‑35
    ACCATAAACGGTTTAATATCGCGCATAAATGCGTC                                      <  1:13025510/35‑1
    ACCATAAACGGTTTAATATCGCGCATAAATGCGTC                                      <  1:16594376/35‑1
    ACCATAAACGGTTTAATATCGCGCATAAATGCGTC                                      <  1:13790124/35‑1
     CCATAAACGGTTTAATATCGCGCATAAATGCGTCG                                     <  1:7964274/35‑1
     CCATAAACGGTTTAATATCGCGCATAAATGCGTCG                                     >  1:18284479/1‑35
     CCATAAACGGTTTAATATCGCGCATAAATGAGTCG                                     <  1:7633591/35‑1
     CCATAAACGGTTTAATATAGCGCATAAATGCGTCG                                     <  1:9343821/35‑1
      CATAAACGGTTTAATATCGCGCATAAATGCGTCGG                                    <  1:19614876/35‑1
      CATAAACGGTTTAATATCGCGCATAAATGCGTCGG                                    >  1:11457015/1‑35
      CATAAACGGTTTAATATCGCGCATAAATGCGTCGG                                    <  1:6734060/35‑1
      CATAAACGGTTTAATATCGCGCATAAATGCGTCGG                                    <  1:8947597/35‑1
        TAAACGGTTTAATATCGCGCATAAATTCGTCGGGt                                  >  1:16622759/1‑34
        TAAACGGTTTAATATCGCGCATAAATGCGTCGGcg                                  >  1:15723336/1‑33
        TAAACGGTTTAATATCGCGCATAAATGCGTCGGGG                                  >  1:4026768/1‑35
         AAACGGTTTAATATCGCGCATAAATGCGTCGGGGG                                 >  1:14924612/1‑35
         AAACGGTTTAATATCGCGCATAAATGCGTCGGGGG                                 >  1:16916912/1‑35
          AACGGTTTAATATCGCGCATAAATGCGTCGGGGGg                                >  1:3342856/1‑34
          AACGGTTTAATATCGCGCATAAATGCGTCGGGGGg                                >  1:5961157/1‑34
          AACGGTTTAATATCGCGCATAAATGCGTCGGGGGg                                >  1:14816966/1‑34
          AACGGTTTAATATCGCGCATAAATGCGTCGGGGGg                                >  1:8895496/1‑34
           ACGGTTTAATATCGCGCATAAATGCGTCGGGGGgg                               >  1:2395777/1‑33
            CGGTTTAATATCGCGCATAAATGCGTCGGGGGgcg                              >  1:1592207/1‑32
            CGGTTTAATATCGCGCATAAATGCGTCGGGGGGGG                              >  1:12070471/1‑35
            CGGTTTAATATCGCGCATAAATGCGTCGGGGGGGG                              >  1:564741/1‑35
            CGGTTTAATATCGCGCATAAATGCGTCGGGGGGGG                              >  1:16847295/1‑35
             GGTTTAATATCGCGCATAAATGCGTCGGGGGGGGG                             >  1:242420/1‑35
             GGTTTAATATCGCGCATAAATGCGTCGGGGGGGGG                             >  1:14125139/1‑35
             GGTTTAATATCGCGCATAAATGCGTCGGGGGGGGG                             >  1:5156231/1‑35
             GGTTTAATATCGCGCATAAATGCGTCGGGGGGGGG                             >  1:1696332/1‑35
             GGTTTAATATCGCGCATAAATGCGTCGGGGGGGGG                             >  1:18222684/1‑35
             GGTTTAATATCGCGCATAAATGCGTCGGGGGCGGG                             >  1:5368361/1‑35
              GTTTAATATCGCGCATAAATGCGTCGGGGGGGGGG                            >  1:8375646/1‑35
              GTTTAATATCGCGCATAAATGCGTCGGGGGGGGGG                            >  1:10177065/1‑35
               TTTAATATCGCGCATAAATGCGTCGGGGGGGGGGG                           >  1:10998283/1‑35
               TTTAATATCGCGCATAAATGCGTCGGGGGGGGGGG                           >  1:12067980/1‑35
               TTTAATATCGCGCATAAATGCGTCGGGGGGGGGGG                           >  1:4924808/1‑35
               TTTAATATCGCGCATAAATGCGTCGGGGGGGGGGG                           >  1:1225908/1‑35
               TTTAATATCGCGCATAAATGCGTCGGGGGGGGGGG                           >  1:2256202/1‑35
               TTTAATATCGCGCATAAATGCGTCGGGGGGGGGGG                           >  1:12267700/1‑35
                TTAATATCGCGCATAAATGCGTCGGGGGGGGGGGg                          >  1:8087375/1‑34
                                  GCGTCGGGGGCGGGGGTATAATGACCATTCTGTTA        <  1:11441430/35‑1
                                  GCGTCGGGGGCGGGGGTATAATGACCATTCTGTTA        >  1:13582595/1‑35
                                  GCGTCGGGGGCGGGGGTATAATGACCATTCTGTTA        <  1:13663117/35‑1
                                  GCGTCGGGGGCGGGGGTATAATGACCATTCTGTTA        <  1:18655143/35‑1
                                   CGTCGGGGGCGGGGGTATAATGACCATTCTGTTAT       <  1:3300669/35‑1
                                   CGTCGGGGGCGGGGGTATAATGACCATTCTGTTAT       >  1:13661356/1‑35
                                   CGTCGGGGGCGGGGGGATAATGACCATTCTGTTAT       >  1:8628107/1‑35
                                    GTCGGGGGCGGGGGTATAATGACCATTCTGTTATT      <  1:6816632/35‑1
                                    GTCGGGGGCGGGGGTATAATGACCATTCTGTTATT      <  1:8926571/35‑1
                                    GTCGGGGGCGGGGGTATAATGACCATTCTGTTATT      <  1:13111540/35‑1
                                    GTCGGGGGCGGGGGTATAATGACAATTCTGTTATT      <  1:2386677/35‑1
                                     TCGGGGGCGTGGGTATAATGACCATTCTGTTATTG     >  1:9292607/1‑35
                                     TCGGGGGCGGGGGTATAATGACCATTCTGTTATTG     <  1:6028338/35‑1
                                     TCGGGGGCGGGGGTATAATGACCATTCTGTTATTG     <  1:10919307/35‑1
                                     TCGGGGGCGGGGGTATAATGACCATTCTGTTATTG     <  1:6182135/35‑1
                                     TCGGGGGCGGGGGTATAATGACCATTCTGTTATTG     <  1:8047265/35‑1
                                      CGGGGGCGGGGGTATAATGACCATTCTGTTATTGC    <  1:12757251/35‑1
                                      CGGGGGCGGGGGTATAATGACCATTCTGTTATTGC    <  1:13019764/35‑1
                                      CGGGGGCGGGGGTATAATGACCATTCTGTTATTGC    <  1:1778674/35‑1
                                      CGGGGGCGGGGGTATAATGACCATTCTGTTATTGC    <  1:17283776/35‑1
                                       GGGGGCGGGGGTATAATGACCATTCTGTTATTGC  >  1:20087150/1‑34
                                       GGGGGCGGGGGTATAATGACCATTCTGTTATTGCA   >  1:20552309/1‑35
                                       GGGGGCGGGGGTATAATGACCATTCTGTTATTGCA   <  1:51545/35‑1
                                       GGGGGCGGGGGTATAATGACCATTCTGTTATTGCA   <  1:8807097/35‑1
                                       GGGGGCGGGGGTATAATGACCATTCTGTTATTGCA   <  1:2275497/35‑1
                                       GGGGGCGGGGGTATAATGACCATTCTGTTATTGCA   >  1:15739156/1‑35
                                       GGGGGCGGGGGTATAATGACCATTCTGTTATTGCA   >  1:6036567/1‑35
                                        GGGGCTGGGGTATAATGACCATTCTGTTATTGCAT  >  1:17250216/1‑35
                                        GGGGCGGGGTTATAATGACCATTCTGTTATTGCAT  <  1:3623919/35‑1
                                        GGGGCGGGGGTATAATGACCATTCTGTTATTGCAT  >  1:6451332/1‑35
                                        GGGGCGGGGGTATAATGACCATTCTGTTATTGCAT  >  1:9402648/1‑35
                                                                           
TGCCACCATAAACGGTTTAATATCGCGCATAAATGCGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/610926‑610886
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtcggGGGCGGGGGTATAATGACCATTCTGTTATTGCAT  >  REL606/1306336‑1306369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.