New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2283386 = | 61 (0.590) | 10 (0.110) | 3/44 | NT | 11.2% | intergenic (‑42/+107) | yfaA/gyrA | hypothetical protein/DNA gyrase subunit A |
? | REL606 | 2645822 = | 102 (1.080) | coding (151/273 nt) | yfiM | hypothetical protein |
GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2283421‑2283386 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCG > REL606/2645822‑2645855 GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCT < 1:6807081/35‑1 GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCT > 1:11961565/1‑35 GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCT < 1:12072617/35‑1 GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCT < 1:5070955/35‑1 GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCT < 1:18668280/35‑1 CTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG < 1:5344304/35‑1 CTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG < 1:16539661/35‑1 CTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG > 1:19619160/1‑35 CTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG > 1:17295892/1‑35 CTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG > 1:19304921/1‑35 TTTGTCGTATTAGGGCACGGTAAAGTTTGGCTGGG > 1:12732516/1‑35 TTTGTCGTATTAGGGCACGGTAAAGTTTGGCTGGG > 1:14269404/1‑35 TTGTCGTATTAGGGCACGGTAAAGTTTGGCTGGGG > 1:16613256/1‑35 TGTCGTATTAGGGCACGGTAAAGTTTGGCTGGGGc > 1:9439740/1‑34 GTCGTATTAGGGCACGGTAAAGTTTGGCTGGGGcg > 1:8655983/1‑33 TCGTATTAGGGCACGGTAAAGTTTGGCTGGGGcgc > 1:17847047/1‑32 TCGTATTAGGGCACGGTAAAGTTTGGCTGGGGccc > 1:1656956/1‑32 TCGTATTAGGGCACGGTAAAGTTTGGCTGGGGGCG > 1:17086886/1‑35 TCGTATTAGGGCACGGTAAAGTTTGGCTGGGGCCG > 1:1053734/1‑35 TCGTATTAGGGCACGGTAAAGTTTGGCTGGGGCCG > 1:10468763/1‑35 CGTATTAGGGCACGGTAAAGTTTGGCTGGGGGCGg > 1:18772611/1‑34 CGTATTAGGGCACGGTAAAGTTTGGCTGGGGCCGg > 1:17787904/1‑34 CGTATTAGGGCACGGTAAAGTTTGGCTGGGGCCGg > 1:5725753/1‑34 GTATTAGGGCACGGTAAAGTTTGGCTGGGGGCGgg > 1:8839604/1‑33 TATTAGGGCACGGTAAAGTTTGGCTGGGGGCGgga > 1:14416748/1‑32 TTAGGGCACGGTAAAGTTTGGCTGGGGGCGTCAAA > 1:5977588/1‑35 TAGGGCACGGTAAAGTTTGGCTGGGGGCGTCAAAA > 1:5242168/1‑35 TGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCC > 1:10501013/1‑35 GGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCG > 1:6395116/1‑35 GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2283421‑2283386 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCG > REL606/2645822‑2645855 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |