New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 245448167 (0.650)14 (0.140) 6/46 NT 15.1% coding (158/342 nt) ECB_02307 conserved hypothetical protein
?REL606 = 4471806 97 (0.940)coding (1485/1503 nt) yjgR predicted ATPase

Only 100 of 167 total aligned reads displayed.

ACAAATCTCGCCTGACTTACCTTCTTCTCCCCCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGAT  >  REL606/4471772‑4471840
                                  |                                  
aCAAATCTCGCCTGACTTACCTTCTTCTccccccc                                    >  1:8366467/1‑35 (MQ=255)
aCAAATCTCGCCTGACTTACCTTCTTCTccccccc                                    <  1:6105111/35‑1 (MQ=255)
aCAAATCTCGCCTGACTTACCTTCTTCTccccccc                                    <  1:16338688/35‑1 (MQ=255)
aCAAATCTCGCCTGACTTACCTTCTTCTccccccc                                    <  1:19410962/35‑1 (MQ=255)
  aaaTCTCGCCTGACTTACCTTTTTCTCCCCCCCAg                                  >  1:1843865/1‑35 (MQ=255)
  aaaTCTCGCCTGACTTACCTTCTTCTCCCCCCCAg                                  >  1:10918446/1‑35 (MQ=255)
  aaaTCTCGCCTGACTTACCTTCTTCTCCCCCCCAg                                  <  1:12018360/35‑1 (MQ=255)
     tctcGCCTGACTTACCTTCTTCTCCCCCCCAGCaa                               >  1:6333679/1‑35 (MQ=255)
     tctcGCCTGACTTACCTTCTTCTCCCCCCCAGCaa                               >  1:4466649/1‑35 (MQ=255)
     tctcGCCTGACTTACCTTCTTCTCCCCCCCAGCaa                               <  1:4158216/35‑1 (MQ=255)
     tctcGCCTGACTTACCTTCTTCTCCCCCCCAGCaa                               >  1:11932012/1‑35 (MQ=255)
      ctcGCCTGACTTACCTTCTTCTCCCCCCCAGCaaa                              <  1:16704539/35‑1 (MQ=255)
      ctcGCCTGACTTACCTTCTTCTCCCCCCCAGCaaa                              >  1:12681028/1‑35 (MQ=255)
       tcGCCTGACTTACCTTCTTCTCCCCCCCAGCAAAc                             <  1:5931830/35‑1 (MQ=255)
       tcGCCTGACTTACCTTCTTCTCCCCCCCAGCAAAc                             <  1:5233587/35‑1 (MQ=255)
       tcGCCTGACTTACCTTCTTCTCCCCCCCAGCAAAc                             >  1:13244473/1‑35 (MQ=255)
        cGCCTGACTTACCTTCTTCTCCCCCCCAGCAAACt                            <  1:3697944/35‑1 (MQ=255)
        cGCCTGACTTACCTTCTTCTCCCCCCCAGCAAACt                            <  1:9604116/35‑1 (MQ=255)
        cGCCTGACTTACCTTCTTCTCCCCACCAGCAAACt                            <  1:12372514/35‑1 (MQ=255)
        cGCCTGACTTACCTTCTTCTCCCCACCAGCAAACt                            <  1:12881776/35‑1 (MQ=255)
        cGCCTGACTTACCTTCTTATCCCCCCCAGCAAACt                            <  1:1912474/35‑1 (MQ=255)
         gCCTGACTTACCTTCTTCTCCCCCCCAGCAAACTc                           <  1:16103404/35‑1 (MQ=255)
         gCCTGACTTACCTTCTTCTCCCCCCCAGCAAACTc                           >  1:17313004/1‑35 (MQ=255)
         gCCTGACTTACCTTCTTCTCCCCCCCAGCAAACTc                           >  1:20009798/1‑35 (MQ=255)
         gCCTGACTTACCTTCTTCTCCCCCCCAGCAAACTc                           <  1:3850108/35‑1 (MQ=255)
           cTGACTTACCTTCTTCTCCCCCCCAGCAAACTccc                         <  1:14672012/35‑1 (MQ=255)
           cTGACTTACCTTCTTCTCCCCCCCAGCAAACTccc                         >  1:1013532/1‑35 (MQ=255)
            tGACTTACCTTCTTCTCCCCCCCAGCAAACTcccc                        >  1:11582667/1‑35 (MQ=255)
            tGACTTACCTTCTTCTCCCCCCCAGCAAACTcccc                        >  1:6258441/1‑35 (MQ=255)
            tGACTTACCTTCTTCTCCCCCCCAGCAAACTcccc                        >  1:12053541/1‑35 (MQ=255)
            tGACTTACCTTCTTCTCCCCCCCAGCAAACTcccc                        >  1:12652352/1‑35 (MQ=255)
            tGACTTACCTTCTTCTCCCCCCCAGCAAACTcccc                        >  1:17559048/1‑35 (MQ=255)
            tGACTTACCTTCTTCTCCCCCCCAGCAAACTcccc                        <  1:14871942/35‑1 (MQ=255)
             gACTTACCTTCTTCTCCCCCCCAGCAAACTCCCCa                       <  1:13788689/35‑1 (MQ=255)
             gACTTACCTTCTTCTCCCCCCCAGCAAACTCCCCa                       <  1:11439303/35‑1 (MQ=255)
              aCTTACCTTCTTCTCCCCCCCAGCAAACTCCCCaa                      <  1:7410078/35‑1 (MQ=255)
              aCTTACCTTCTTCTCCCCCCCAGCAAACTCCCAaa                      <  1:12332855/35‑1 (MQ=255)
               cTTACCTTCTTCTCCCCCCCAGCAAACTCCCCGAc                     >  1:8261348/1‑35 (MQ=255)
               cTTACCTTCTTCTCCCCCCCAGCAAACTCCCCAAc                     <  1:13866216/35‑1 (MQ=255)
               cTTACCTTCTTCTCCCCCCCAGCAAACTCCCCAAc                     >  1:351711/1‑35 (MQ=255)
               cTTACCTTCTTCTCCCCCCCAGCAAACTCCCCAAc                     >  1:7322050/1‑35 (MQ=255)
                ttACCTTCTTCTCCCCCCCAGCAAACTCCCCAACa                    <  1:831856/35‑1 (MQ=255)
                ttACCTTCTTCTCCCCCCCAGCAAACTCCCCAACa                    >  1:7581561/1‑35 (MQ=255)
                ttACCTTCTTCTCCCCCCCAGCAAACTCCCCAACa                    >  1:11256151/1‑35 (MQ=255)
                ttACCTTCTTCTCCCCCCCAGCAAACTCCCCAACa                    <  1:9222766/35‑1 (MQ=255)
                ttACCTTCTTCTCCCCCCCAGCAAACTCCCCAACa                    <  1:6781920/35‑1 (MQ=255)
                ttACCTTCTTCTCCCCCCCAGCAAACTCCCAACAt                   >  1:9538092/1‑35 (MQ=38)
                ntACCTTCTTCTCCCCCCCAGCAAACTCCCCAACa                    >  1:17080976/2‑35 (MQ=255)
                 tACCTTCTTCTCCCCCCCAGCAAACTCCCCAACAt                   >  1:8582510/1‑35 (MQ=255)
                 tACCTTCTTCTCCCCCCCAGCAAACTCCCCAACAt                   <  1:15400059/35‑1 (MQ=255)
                  aCCTTCTTCTCCCCCCCAGCAAACTCCCCAACATc                  <  1:2184804/35‑1 (MQ=255)
                  aCCTTCTTCTCCCCCCCAGCAAACTCCCCAACATc                  <  1:12322576/35‑1 (MQ=255)
                  aCCATCTTCTCCCCCCCAGCAAACTCCCCAACATc                  >  1:13156575/1‑35 (MQ=255)
                   ccTTCTTCTCCCCCCCAGCAAACTCCCCAACATcc                 >  1:3732551/1‑35 (MQ=255)
                    ttttttctCCCCCCCcctgccgctagtgtctacaa                >  1:4617533‑M2/2‑15 (MQ=255)
                    cttcttCTCCCCCCCAGCAAACTCCCCAACATccc                <  1:17604297/35‑1 (MQ=255)
                    cttcttCTCCCCCCCAGCAAACTCCCCAACATccc                >  1:20583845/1‑35 (MQ=255)
                    cttcttCTCCCCCCCAGCAAACTCCCCAACATccc                >  1:13082327/1‑35 (MQ=255)
                    cttcttCTCCCCCCCAGCAAACTCCCCAACATccc                <  1:16157192/35‑1 (MQ=255)
                    cttcttCTCCCCCCCAGCAAACTCCCCAACATccc                <  1:1042522/35‑1 (MQ=255)
                     ttcttcTCCCCCCCAGCAAACTCCCCAACATCCcg               <  1:18753577/35‑1 (MQ=255)
                      tcttctCCCCCCCcctgccgctagtgtctacaatc              >  1:2210310‑M2/1‑13 (MQ=255)
                       cttctCCCCCCCAGCAAACTCCCCAACATCCcgct             <  1:6765990/35‑2 (MQ=255)
                       cttctCCCCCCCAGCAAACTCCCCAACATCCcgcg             >  1:19167607/1‑35 (MQ=255)
                        ttctCCCCCCCAGCAAACTCCCCAACATCCCGCGt            <  1:558762/35‑1 (MQ=255)
                         tctcCCCCCCcctgccgctagtgtctacaatctct           >  1:7070088‑M2/1‑10 (MQ=255)
                         tctcCCCCCCAGCAAACTCCCCAACATCCCGCGTa           >  1:11955348/1‑35 (MQ=255)
                         tctcCCCCCCAGCAAACTCCCCAACATCCCGCGTa           >  1:2973238/1‑35 (MQ=255)
                         cccccccccccctgccgctagtgtctacaatctct           >  1:1797968‑M2/4‑10 (MQ=255)
                          ctcCCCCCCAGCAAACTCCCCAACATCCCGCGTAc          >  1:16995461/1‑35 (MQ=255)
                           tcCCCCCCcctgccgctagtgtctacaatctcttt         >  1:8733079‑M2/1‑8 (MQ=255)
                           tcCCCCCCAGCAAACTCCCCAACATCCCGCGTACa         <  1:1162275/35‑1 (MQ=255)
                           tcCCCCCCAGCAAACTCCCCAACATCCCGCGTACa         <  1:4821497/35‑1 (MQ=255)
                           tcCCCCCCAGCAAACTCCCCAACATCCCGCGTACa         <  1:18247753/35‑1 (MQ=255)
                           cctccccccctgccgctagtgtctacaatctcttt         >  1:15451741‑M2/4‑8 (MQ=255)
                           cccccccccctgccgctagtgtctacaatctcttt         >  1:406835‑M2/2‑8 (MQ=255)
                           cccccccccctgccgctagtgtctacaatctcttt         >  1:17463084‑M2/2‑8 (MQ=255)
                            cccccccAGCAAACTCCCCAACATCCCGCGTACaa        >  1:2477678/1‑35 (MQ=255)
                             cccccccctgccgctagtgtctacaatctctttaa       >  1:4349664‑M2/1‑6 (MQ=255)
                             ccccccAGCAAACTCCCCAACATCCCGCGTACAAt       <  1:1423965/35‑1 (MQ=255)
                             ccccccAGCAAACTCCCCAACATCCCGCGTACAAt       <  1:7274678/35‑1 (MQ=255)
                              ccccccctgccgctagtgtctacaatctctttaat      >  1:20032867‑M2/1‑5 (MQ=255)
                              ccccccctgccgctagtgtctacaatctctttaat      >  1:18500721‑M2/1‑5 (MQ=255)
                              ccccccctgccgctagtgtctacaatctctttaat      >  1:3149231‑M2/1‑5 (MQ=255)
                              cccccAGCAAACTCCCCAACATCCCGCGTACAATc      >  1:10674131/1‑35 (MQ=255)
                              cccccAGCAAACTCCCCAACATCCCGCGTACAATc      >  1:5851018/1‑35 (MQ=255)
                              cccccAGCAAACTCCCCAACATCCCGCGTACAATc      <  1:4735095/35‑1 (MQ=255)
                              cccccAGCAAACTCCCCAACATCCCGCGTACAATc      <  1:10163078/35‑1 (MQ=255)
                              cccccAGCAAACTCCCCAACATCCCGCGTACAATc      >  1:16323938/1‑35 (MQ=255)
                               cccccctgccgctagtgtctacaatctctttaatt     >  1:6482195‑M2/1‑4 (MQ=255)
                               ccccAGCAAACTCCCCAACATCCCGCGTACAATCt     >  1:15600277/1‑35 (MQ=255)
                                ccccctgccgctagtgtctacaatctctttaattt    >  1:16034747‑M2/1‑3 (MQ=255)
                                ccccctgccgctagtgtctacaatctctttaattt    >  1:13578383‑M2/1‑3 (MQ=255)
                                ccccctgccgctagtgtctacaatctctttaattt    >  1:18043660‑M2/1‑3 (MQ=255)
                                cccAGCAAACTCCCCAACATCCCGCGTACAATCTg    <  1:7781239/35‑1 (MQ=255)
                                cccAGCAAACTCCCCAACATCCCGCGTACAATCTg    <  1:11779209/35‑1 (MQ=255)
                                 cccctcccgctagtgtctacaatctctttaatttg   >  1:4519857‑M2/1‑2 (MQ=255)
                                  ccctgccgctagtgtctacaatctctttaatttgt  >  1:4599232‑M2/1‑1 (MQ=255)
                                  ccctgccgctagtgtctacaatctctttaatttgt  >  1:14720496‑M2/1‑1 (MQ=255)
                                  cAGCAAACTCCCCAACATCCCGCGTACAATCTGAt  >  1:4264018/1‑35 (MQ=255)
                                  |                                  
ACAAATCTCGCCTGACTTACCTTCTTCTCCCCCCCAGCAAACTCCCCAACATCCCGCGTACAATCTGAT  >  REL606/4471772‑4471840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.