New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1255973 =72 (0.700)12 (0.140) 4/40 NT 19.0% coding (130/2868 nt) ycgV predicted adhesin
?REL606 = 3223859 42 (0.490)coding (537/696 nt) yraI predicted periplasmic pilin chaperone

CGCTATTGGTTTGAATGCAATTATATTTCCCCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1256010‑1255973
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcCAATCCGGCAAATACGACGTAATATTCAGTTGGG  <  REL606/3223859‑3223826
                                                                        
CGCTATTGGTTTGAATGCAATTATATTTCCCCCCC                                       <  1:12937095/35‑1
CGCTATTGGTTTGAATGCAATTATATTTCCCCCCC                                       <  1:15483620/35‑1
 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT                                      <  1:594120/35‑1
 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT                                      <  1:5830421/35‑1
 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT                                      >  1:11256517/1‑35
 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT                                      <  1:12373380/35‑1
 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT                                      >  1:12381199/1‑35
 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT                                      >  1:18842355/1‑35
 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT                                      <  1:16129649/35‑1
 GCTATTGGTTTGAATGCAATTATATTTACCCCCCT                                      <  1:10655079/35‑1
  CTATTGGTTTGAATGCAATTATATTTCCCCCCCTG                                     <  1:5826193/35‑1
  CTATTGGTTTGAATGCAATTATATTTCCCCCCCTG                                     <  1:5782422/35‑1
  CTATTGGTTTGAATGCAATTATATTTCCCCCCCTG                                     >  1:4593934/1‑35
  CTATTGGTTTGAATGCAATTATATTTCCCCCCCTG                                     >  1:10314298/1‑35
   TATTGGTTTGAATGCAATTATATTTCCCCCCCTGC                                    >  1:14288450/1‑35
   TATTGGTTTGAATGCAATTATATTTCCCCCCCTGC                                    >  1:20347213/1‑35
                       ttTTTCCCCCCCTGCCAATCCGGCAAATACGACGT                <  1:16270749/33‑1
                       ttTTTCCCCCCCTGCCAATCCGGCAAATACGACGT                <  1:2173898/33‑1
                       ttTTTCCCCCCCTGCCAATCCGGCAAATACGACGT                <  1:16706786/33‑1
                       ttTTTCCCCCCCTGCCAATCCGGCAAATACGACGT                <  1:5174791/33‑1
                       ttTTTCCCCCCCTGCCAATCCGGCAAATACGACGT                <  1:11405117/33‑1
                       ttTTTCCCCCCCTGCCAATCCGGCAAATACGACGT                <  1:19415412/33‑1
                         TTTCCCCCCCTGCCAATCCGGCAAATACGACGTAA              <  1:6505031/35‑1
                          TTCCCCCCCTGCCAATCCGGCAAATACGACGTAAT             <  1:9875090/35‑1
                           TCCCCCCCTGCCAATCCGGCAAATACGACGTAATA            <  1:3219985/35‑1
                            CCCCCCCTGCCAATCCGGCAAATACGACGTAATAT           <  1:3945430/35‑1
                            CCCCCCCTGCCAATCCGGCAAATACGACGTAATAT           <  1:10400319/35‑1
                            CCCCCCCTGCCAATCCGGCAAATACGACGTAATAT           <  1:15299865/35‑1
                             CCCCCCTGCCAATCCGGCAAATACGACGTAATATT          <  1:6567349/35‑1
                              CCCCCTGCCAATCCGGCAAATACGACGTAATATTC         <  1:11375488/35‑1
                              CCCCCTGCCAATCCGGCAAATACGACGTAATATTC         <  1:4602869/35‑1
                              CCCCCTGCCAATCCGGCAAATACGACGTAATATTC         <  1:7830448/35‑1
                              CCCCCTGCCAATCCGGCAAATACGACGTAATATTC         <  1:3485255/35‑1
                              CCCCCTGCCAATCCGGCAAATACGACGTAATATTC         <  1:27625/35‑1
                              CCCCCTGCCAATCCGGCAAATACGACGTAATATTC         <  1:17261712/35‑1
                               CCCCTGCCAATCCGGCAAATACGACGTAATATTCA        <  1:20539765/35‑1
                                CCCTGCCAATCCGGCAAATACGACGTAATATTCAG       <  1:4100215/35‑1
                                CCCTGCCAATCCGGCAAATACGACGTAATATTCAG       <  1:9596495/35‑1
                                  CTGCCAATCCGGCAAATACGACGTAATATTCAGTT     >  1:189368/1‑35
                                  CTGCCAATCCGGCAAATACGACGTAATATTCAGTT     >  1:14751169/1‑35
                                    GCCAATCCGGCAAATACGACGTAATATTCAGTTG  >  1:1428666/1‑34
                                    GCCAATCCGGCAAATACGACGTAATATTCAGTTGG   <  1:16487033/35‑1
                                     CCAATCCGGCAAATACGACGTAATATTCAGTTGGG  >  1:1324206/1‑35
                                     CCAATCCGGCAAATACGACGTAATATTCAGTTGGG  >  1:13410612/1‑35
                                     CCAATCCGGCAAATACGACGTAATATTCAGTTGGG  <  1:18700468/35‑1
                                     CCAATCCGGCAAATACGACGTAATATTCAGTTGGG  <  1:17789208/35‑1
                                                                        
CGCTATTGGTTTGAATGCAATTATATTTCCCCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1256010‑1255973
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcCAATCCGGCAAATACGACGTAATATTCAGTTGGG  <  REL606/3223859‑3223826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.