New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 167341370 (0.680)24 (0.250) 7/44 NT 28.7% intergenic (‑147/+244) uidA/uidR beta‑D‑glucuronidase/DNA‑binding transcriptional repressor
?REL606 = 4601575 55 (0.580)intergenic (+52/‑70) ytjA/yjjU hypothetical protein/predicted esterase

Only 100 of 128 total aligned reads displayed.

AAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTT  >  REL606/4601541‑4601609
                                  |                                  
aaaTTTTATCCAAAGCCAGTCCAGCGGACTGGCtt                                    >  1:17458936/1‑35 (MQ=255)
aaaTTTTATCCAAAGCCAGTCCAGCGGACTGGCtt                                    >  1:18838276/1‑35 (MQ=255)
aaaTTTTATCCAAAGCCAGTCCAGCGGACTGGCtt                                    <  1:4712022/35‑1 (MQ=255)
 atttttACCCAAAGCCAGTCCAGCGGACTGGCttt                                   <  1:3883907/33‑1 (MQ=37)
 aaTTTTATCCAAAGCCAGTCCAGCGGACTGGCTTt                                   <  1:6434995‑M2/35‑2 (MQ=255)
 aaTTTTATCCAAAGCCAGTCCAGAGGACTGGCTTt                                   >  1:11823070‑M2/1‑34 (MQ=255)
  gtttaATCAAAAGCCAGTCCAGCGGACTGGCtttt                                  <  1:8714057/34‑1 (MQ=21)
  aTTTTATCCAAAGCCAGTCCAGCGGACTGGCTTtt                                  >  1:6151916‑M2/1‑33 (MQ=255)
  aTTTTATCCAAAGCCAGTCCAGCGGACTGGCTTtt                                  <  1:7085985‑M2/35‑3 (MQ=255)
  aTTTTATCCAAAGCCAGTCCAGCGGACTGGCTTtt                                  >  1:20220957‑M2/1‑33 (MQ=255)
  aTTTTATCCAAAGCCAGTCCAGCGGACTGGCTTtt                                  <  1:6435527‑M2/35‑3 (MQ=255)
  aTTTTATCAAAAGCCAGTCCAGCGGACTGGCTTtt                                  >  1:2805806‑M2/1‑33 (MQ=255)
   ttttATCCAAAGCCAGTCCAGCGGACTGGCTTttt                                 <  1:15850565‑M2/35‑4 (MQ=255)
   ttttATCCAAAGCCAGTCCAGCGGACTGGCTTttt                                 <  1:17989862‑M2/35‑4 (MQ=255)
   ttttATCCAAAGCCAGTCCAGCGGACTGGCTTTTg                                 <  1:13687262/35‑1 (MQ=255)
    tttATCCAAAGCCAGTCCAGCGGACTGGCTTtttt                                <  1:4602315‑M2/35‑5 (MQ=255)
     ttATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCg                               <  1:16685524/35‑1 (MQ=255)
     ttATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCg                               <  1:8411317/35‑1 (MQ=255)
      tATCCAAAGCCAGTCCAGCGGACTGGCTTtttttt                              <  1:16257160‑M2/35‑7 (MQ=255)
      tATCCAAAGCCAGTCCAGCGGACTGGCTTtttttg                              <  1:9332146‑M2/35‑7 (MQ=255)
      tATCCAAAGCCAGTCCAGCGGACTGGCTTttttct                              <  1:435387‑M2/35‑7 (MQ=255)
      tATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCgg                              <  1:17861493/35‑1 (MQ=255)
       aTCCAAAGCCAGTCCAGCGGACTGGCTTttttttg                             <  1:14225253‑M2/35‑8 (MQ=255)
       aTCCAAAGCCAGTCCAGCGGACTGGCTTttttttg                             <  1:3278654‑M2/35‑8 (MQ=255)
       aTCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGt                             <  1:16202743/35‑1 (MQ=255)
        tCCAAAGCCAGTCCAGCGGACTGGCTTtttttggt                            <  1:9772349‑M2/35‑9 (MQ=255)
        tCCAAAGCCAGTCCAGCGGACTGGCTTttttgggt                            <  1:11612747‑M2/35‑9 (MQ=255)
        cccAAAGCCAGTCCAGCGGACTGGCTTTTGCGGtt                            <  1:5589189/34‑1 (MQ=255)
         ccAAAGCCAGTCCAGCGGACTGGCTTtttttggtt                           <  1:13785954‑M2/35‑10 (MQ=255)
         ccAAAGCCAGTCCAGCGGACTGGCTTtttttggtt                           <  1:3458783‑M2/35‑10 (MQ=255)
          cAAAGCCAGTCCAGCGGACTGGCTTtttttgtttt                          <  1:328481‑M2/35‑11 (MQ=255)
          cAAAGCCAGTCCAGCGGACTGGCTTttttgggttt                          <  1:5574627‑M2/35‑11 (MQ=255)
          cAAAGCCAGTCCAGCGGACTGGCTTTTGCGGtttt                          <  1:14974250/35‑1 (MQ=255)
          cAAAGCCAGTCCAGCGGACTGGCTTTTGCGGtttt                          <  1:18788395/35‑1 (MQ=255)
           aaaGCCAGTCCAGCGGACTGGCTTtttctggtttt                         <  1:4367675‑M2/35‑12 (MQ=255)
           aaaGCCAGTCCAGCGGACTGGCTTTTTTGGttttt                         >  1:14283964/1‑34 (MQ=25)
           aaaGCCAGTCCAGCGGACTGGCTTTTTTGGttttt                         >  1:11265841/1‑34 (MQ=25)
           aaaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTa                         <  1:237952/35‑1 (MQ=255)
           aaaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTa                         <  1:5453621/35‑1 (MQ=255)
           aaaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTa                         <  1:16841351/35‑1 (MQ=255)
           aaaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTa                         <  1:7026283/35‑1 (MQ=255)
            aaGCCAGTCCAGCGGACTGGCTTtttttgtttttt                        <  1:19387833‑M2/35‑13 (MQ=255)
            aaGCCAGTCCAGCGGACTGGCTTtttttggttttt                        <  1:11899091‑M2/35‑13 (MQ=255)
            aaGCCAGTCCAGCGGACTGGCTTtttttggttttt                        <  1:12163945‑M2/35‑13 (MQ=255)
            aaGCCAGTCCAGCGGACTGGCTTtttttggttttt                        <  1:15705529‑M2/35‑13 (MQ=255)
            aaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAg                        <  1:4829748/35‑1 (MQ=255)
             aGCCAGTCCAGCGGACTGGCTTtttttgttttttt                       <  1:641020‑M2/35‑14 (MQ=255)
             aGCCAGTCCAGCGGACTGGCTTtttttgttttttg                       <  1:19003734‑M2/35‑14 (MQ=255)
              gCCAGTCCAGCGGACTGGCTTtttttgtttttttg                      <  1:16267233‑M2/35‑15 (MQ=255)
              gCCAGTCCAGCGGACTGGCTTtttttggttttttg                      <  1:8469514‑M2/35‑15 (MQ=255)
              gCCAGTCCAGCGGACTGGCTTtttttggtttttgg                      <  1:2665239‑M2/35‑15 (MQ=255)
              gCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCg                      <  1:816536/35‑1 (MQ=255)
               ccAGTCCAGCGGACTGGCTTttttgggttttttgg                     <  1:3710027‑M2/35‑16 (MQ=255)
               ccAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGa                     <  1:19009902/35‑1 (MQ=255)
               ccAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGa                     <  1:3887824/35‑1 (MQ=255)
                cAGTCCAGCGGACTGGCTTtttttgtttttttgaa                    <  1:9482729‑M2/35‑17 (MQ=255)
                cAGTCCAGCGGACTGGCTTtttttggttttttgga                    <  1:1639897‑M2/35‑17 (MQ=255)
                cAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaa                    <  1:7371600/35‑1 (MQ=255)
                cAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaa                    <  1:13199552/35‑1 (MQ=255)
                 aGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat                   <  1:2333572/35‑1 (MQ=255)
                 aGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat                   <  1:20264474/35‑1 (MQ=255)
                  gTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaata                  <  1:11929168/35‑1 (MQ=255)
                   tCCAGCGGACTGGCTTTTGCGGTTTTAGCGaataa                 <  1:1702153/35‑1 (MQ=255)
                    ccAGCGGACTGGCTTTTGCGGTTTTAGCGaataat                <  1:1700543/35‑1 (MQ=255)
                    ccAGCGGACTGGCTTTTGCGGTTTTAGCGaataat                <  1:17114918/35‑1 (MQ=255)
                    ccAGCGGACTGGCTTTTGCGGTTTTAGCGaataat                <  1:5019028/35‑1 (MQ=255)
                    ccAGCGGACTGGCTTTTGCGGTTTTAGCGaataat                <  1:3269316/35‑1 (MQ=255)
                      aGCGGACTTGCTTTTGCGGTTTTAGCGAAtaataa              >  1:5912941/1‑35 (MQ=255)
                      aGCGGACTGGCTTTTGCGGTTTTAGCGAAtaataa              <  1:7888625/35‑1 (MQ=255)
                        cGGACTGGCTTTTGCGGTTTTAGCGAATAATAAAt            <  1:6610496/35‑1 (MQ=255)
                        cGGACTGGCTTTTGCGGTTTTAGCGAATAATAAAt            <  1:16981678/35‑1 (MQ=255)
                        cGGACTGGCTTTTGCGGTTTTAGCGAATAATAAAt            <  1:12297069/35‑1 (MQ=255)
                        cGGACTGGCTTTTGCGGTTTTAGCGAATAATAAAt            <  1:3992423/35‑1 (MQ=255)
                         ggACTGGCTTTTGCGGTTTTAGCGAATAATAAAtt           <  1:4613112/35‑1 (MQ=255)
                         ggACTGGCTTTTGCGGTTTTAGCGAATAATAAAtt           <  1:9497221/35‑1 (MQ=255)
                          gACTGGCTTTTGCGGTTTTAGCGAATAATAAATTg          <  1:15481389/35‑1 (MQ=255)
                          gACTGGCTTTTGCGGTTTTAGCGAATAATAAATTg          <  1:14653002/35‑1 (MQ=255)
                          gACTGGCTTTTGCGGTTTTAGCGAATAATAAATTg          <  1:18331048/35‑1 (MQ=255)
                          gACTGGCTTTTGCGGTTTTAGCGAATAATAAATTg          <  1:13209680/35‑1 (MQ=255)
                          gACTCGCTTTTGCGGTTTTAGCGAATAATAAATTg          >  1:15760901/1‑35 (MQ=255)
                           aCTGGCTTTTGCGGTTTTAGCGAATAATAAATTGc         <  1:15414069/35‑1 (MQ=255)
                           aCTGGCTTTTGCGGTTTTAGCGAATAATAAATTGc         <  1:6036786/35‑1 (MQ=255)
                            cTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCg        >  1:7234545/1‑35 (MQ=255)
                            cTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCg        >  1:16521185/1‑35 (MQ=255)
                            cTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCg        >  1:17412257/1‑35 (MQ=255)
                             tGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGt       <  1:16592612/35‑1 (MQ=255)
                             tGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGt       <  1:78003/35‑1 (MQ=255)
                             tGGCCTTTGCGGTTTTAGCGAATAATAAATTGCGt       >  1:6035216/1‑35 (MQ=255)
                              ggCTTTTGCGGTTTTAGCGAATAATAAATTGCGtt      >  1:4912125/1‑35 (MQ=255)
                               gCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTa     <  1:18878874/35‑1 (MQ=255)
                               gCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTa     <  1:20069603/35‑1 (MQ=255)
                                cTTTTGCGGTTTTAGCGAATAATAAATTGCGTTAc    >  1:11172058/1‑35 (MQ=255)
                                cTTTTGCGGTTTTAGCGAATAATAAATTGCGTTAc    >  1:1723738/1‑35 (MQ=255)
                                cTTTTGCGGTTTTAGCGAATAATAAATTGCGTTAc    <  1:5030372/35‑1 (MQ=255)
                                 ttttGCGGTTTTAGCGAATAATAAATTGCGTTACt   >  1:7977108/1‑35 (MQ=255)
                                 ttttGCGGTTTTAGCGAATAATAAATTGCGTTACt   <  1:7333336/35‑1 (MQ=255)
                                 ttttGCGGTTTTAGCGAATAATAAATTGCGTTACt   >  1:6985483/1‑35 (MQ=255)
                                 ttttGCGGTTTTAGCGAATAATAAATTGCGTTACt   <  1:11436957/35‑1 (MQ=255)
                                  tttGCGGTTTTAGCGAATAATAAATTGCGTTACtt  <  1:396326/35‑1 (MQ=255)
                                  tttGCGGTTTTAGCGAATAATAAATTGCGTTACtt  <  1:19357650/35‑1 (MQ=255)
                                  |                                  
AAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTT  >  REL606/4601541‑4601609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.