New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 790656 =71 (0.690)5 (0.070) 3/34 NT 9.7% coding (88/186 nt) ECB_00731 conserved hypothetical protein
?REL606 1598222 = 43 (0.590)coding (459/1461 nt) ydfI predicted mannonate dehydrogenase

Only 100 of 154 total aligned reads displayed.

GATTTTTGCAGAGATTGAACGTAAATATGCGCATCAGCCGATGACGCCAAAAGTTATCGATGAAATGCA  >  REL606/790622‑790690
                                  |                                  
gATTTTTGCAGAGATTGAACGTAAATATGCGCATc                                    <  1:9081093/35‑1 (MQ=255)
cccgatggtcgctgccgacgtgcaaaatccccacc                                    <  1:7183536‑M1/1‑1 (MQ=255)
cccgatggtcgctgccgacgtgcaaaatccccacc                                    <  1:8031811‑M1/1‑1 (MQ=255)
 aTTTTTGCAGAGATTGAACGTAAATATGGGCATCa                                   <  1:15901104/35‑1 (MQ=255)
 aTTTTTGCAGAGATTGAACGTAAATATGCGCATCa                                   >  1:7158081/1‑35 (MQ=255)
 aTTTTTGCAGAGATTGAACGTAAATATGCGCATCa                                   <  1:8950208/35‑1 (MQ=255)
 aTTTTTGCAGAGATTGAACGTAAATATGCGCATCa                                   <  1:13048395/35‑1 (MQ=255)
 aTTTTTGCAGAGATTGAACGTAAATATGCGCATCa                                   <  1:18837731/35‑1 (MQ=255)
 aTTTTTGCAGAGATTGAACGTAAATATGCGCATCa                                   <  1:12017771/35‑1 (MQ=255)
 aTTTTTGCAGAGATTGAACGTAAATATGCGCATCa                                   <  1:19423009/35‑1 (MQ=255)
  tttttGCAGAGATTGAACGTAAATATGCGCATCAg                                  <  1:5031065/35‑1 (MQ=255)
  tttttGCAGAGATTGAACGTAAATATGCGCATCAg                                  <  1:8165183/35‑1 (MQ=255)
  tttttGCAGAGATTGAACGTAAATATGCGCATCAg                                  <  1:5007722/35‑1 (MQ=255)
  tttttGCAGAGATTGAACGTAAATATGCGCATCAg                                  <  1:8660906/35‑1 (MQ=255)
  tttttGCAGAGATTGAACGTAAATATGCGCATCAg                                  <  1:4291818/35‑1 (MQ=255)
  tttttGCAGAGATTGAACGTAAATATGCGCATCAg                                  <  1:219634/35‑1 (MQ=255)
   gatggtcgctgccgacgtgcaaaatccccacCAGc                                 >  1:3097965‑M1/32‑35 (MQ=255)
   gatggtcgctgccgacgtgcaaaatccccacCAGc                                 <  1:736273‑M1/4‑1 (MQ=255)
   gatggtcgctgccgacgtgcaaaatccccacCAGc                                 <  1:17084617‑M1/4‑1 (MQ=255)
   gatggtccctgccgacgtgcaaaatccccacCAGc                                 >  1:16812515‑M1/32‑35 (MQ=255)
    tttGCAGAGATTGAACGTAAATATGCGCATGAGcc                                <  1:890148/35‑1 (MQ=255)
    tttGCAGAGATTGAACGTAAATATGCGCATCAGcc                                >  1:7443047/1‑35 (MQ=255)
    tttGCAGAGATTGAACGTAAATATGCGCATCAGcc                                <  1:11040352/35‑1 (MQ=255)
    gtggtcgctgccgacgtgcaaaatccccacCAGcc                                >  1:17301248‑M1/31‑35 (MQ=255)
    atggtcgctgccgacgtgcaaaatccccacCAGcc                                <  1:17074790‑M1/5‑1 (MQ=255)
     ttGCAGAGATTGAACGTAAATATGCGCATCAGCCg                               >  1:10357100/1‑35 (MQ=255)
     ttGCAGAGATTGAACGTAAATATGCGCATCAGCCg                               <  1:11211779/35‑1 (MQ=255)
     ttGCAGAGATTGAACGTAAATATGCGCATCAGCCg                               <  1:16625105/35‑1 (MQ=255)
     ttGCAGAGATTGAACGTAAATATGCGCATCAGCCg                               <  1:7803052/35‑1 (MQ=255)
      tGCAGAGATTGAACGTAAATATGCGCATCAGCCGa                              >  1:3907193/1‑35 (MQ=255)
      tGCAGAGATTGAACGTAAATATGCGCATCAGCCGa                              >  1:7592984/1‑35 (MQ=255)
      tGCAGAGATTGAACGTAAATATGCGCATCAGCCGa                              <  1:12083232/35‑1 (MQ=255)
      ggtcgctgccgacgtgcaaaatccccacCAGCCGa                              <  1:19963831‑M1/7‑1 (MQ=255)
       gCAGAGATTGAACGTAAATATGCGCATCAGCCGAt                             >  1:17185054/1‑35 (MQ=255)
       gCAGAGATTGAACGTAAATATGCGCATCAGCCGAt                             >  1:17811454/1‑35 (MQ=255)
       gCAGAGATTGAACGTAAATATGCGCATCAGCCGAt                             >  1:15946243/1‑35 (MQ=255)
        cAGAGATTGAACGTAAATATGCGCATCAGCCGATg                            >  1:9504502/1‑35 (MQ=255)
        cAGAGATTGAACGTAAATATGCGCATCAGCCGATg                            >  1:14631234/1‑35 (MQ=255)
        cAGAGATTGAACGTAAATATGCGCATCAGCCGATg                            >  1:14272649/1‑35 (MQ=255)
        cAGAGATTGAACGTAAATATGCGCATCAGCAGATg                            <  1:15205111/35‑1 (MQ=255)
         agagGTTGAACGTAAATATGCGCATCAGCCGATGa                           >  1:20345418/1‑35 (MQ=255)
         agagATTGAACGTAAATATGCGCATCAGCCGATGa                           >  1:6624412/1‑35 (MQ=255)
         agagATTGAACGTAAATATGCGCATCAGCCGATGa                           >  1:10126545/1‑35 (MQ=255)
          gagaTTGAACGTAAATATGCGCATCAGCCGATGAc                          >  1:18141842/1‑35 (MQ=255)
          gagaTTGAACGTAAATATGCGCACCAGCCGATGAc                          <  1:2219254/35‑1 (MQ=255)
           agaTTGAACGTAAATATGCGCATCAGCCGATTACg                         >  1:9041954/1‑35 (MQ=255)
            gaTTGAACGTAAATATGCGCATCAGCCGATGACGc                        >  1:7154602/1‑35 (MQ=255)
             aTTGAACGGAAATATGCGCATCAGCCGATGACGcc                       >  1:17520144/1‑35 (MQ=255)
              ttGAACGTAAATATGCGCATCAGCCGATGACGCCa                      >  1:10943644/1‑35 (MQ=255)
              ttGAACGTAAATATGCGCATCAGCCGATGACGCCa                      >  1:13864173/1‑35 (MQ=255)
               tGAACGTAAATATGCGCATCAGCCGATGACGCCaa                     >  1:13538955/1‑35 (MQ=255)
                gAACGTAAATATGCGCATCAGCCGATGACGCCaaa                    >  1:13737999/1‑35 (MQ=255)
                gAACGTAAATATGCGCATCAGCCGATGACGCCaaa                    >  1:9093024/1‑35 (MQ=255)
                 aaCGTAAATATGCGCATCATCCGATGACGCCaaaa                   >  1:10312994/1‑35 (MQ=255)
                 aaCGTAAATATGCGCATCAGCCGATGACGCCaaaa                   >  1:14346085/1‑35 (MQ=255)
                 aaCGTAAATATGCGCATCAGCCGATGACGCCaaaa                   >  1:19981797/1‑35 (MQ=255)
                 aaCGTAAATATGCGCATCAGCCGATGACGCCaaaa                   >  1:15297506/1‑35 (MQ=255)
                 aaCGTAAATATGCGCATCAGCCGATGACGCCaaaa                   >  1:17711638/1‑35 (MQ=255)
                  aCGTAAATATGCGCATCAGCCGATGACGCCAAAAg                  >  1:12717527/1‑35 (MQ=255)
                    gTAAATATGCGCATCAGCCTATGACGCCAAAAGtt                >  1:7324160/1‑35 (MQ=255)
                    gTAAATATGCGCATCAGCCGATGACGCCAAAAGtt                >  1:8349003/1‑35 (MQ=255)
                     tAAATATGCGCATCAGCCGATGACGCCAAAAGTTa               >  1:16313816/1‑35 (MQ=255)
                     tAAATATGCGCATCAGCCGATGACGCCAAAAGTTa               >  1:5851129/1‑35 (MQ=255)
                      aaaTATGCGCATCAGCCGATGACGCCAAAAGTTAt              >  1:11588953/1‑35 (MQ=255)
                       aaTATGCGCCCCAGCCGATGACGCCAAAAGTTATc             <  1:9677079/35‑1 (MQ=37)
                       aaTATGCGCATCAGCCGATGACGCCAAAAGTTATc             >  1:2843400/1‑35 (MQ=255)
                       aaTATGCGCATCAGCCGATGACGCCAAAAGTTATc             >  1:19020051/1‑35 (MQ=255)
                        atatGCGCATCAGCCGATGACGCCAAAAGTTATCg            >  1:16208825/1‑35 (MQ=255)
                        atatGCGCATCAGCCGATGACGCCAAAAGTTATCg            >  1:4436189/1‑35 (MQ=255)
                        atatGCGCATCAGCCGATGACGCCAAAAGTTATCg            >  1:13301013/1‑35 (MQ=255)
                        atatGCCCACCAGCCGATGACGCCAAAAGTTATCg            <  1:6346618/35‑1 (MQ=37)
                        atatCCGCACCAGCCGATGACGCCAAAAGTTATCg            <  1:15017153/35‑1 (MQ=37)
                        atacGCGCCCCAGCCGATGACGCCAAAAGTTATCg            <  1:5523864/35‑1 (MQ=25)
                         tatgcccacCAGCCGATGACGCCAAAAGTTATCGa           >  1:7178786‑M1/10‑35 (MQ=255)
                         tatGCGCATCAGCCGATGACGCCAAAATTTATCGa           >  1:20322559/1‑35 (MQ=255)
                         tatGCGCATCAGCCGATGACGCCAAAAGTTATCGa           >  1:10662144/1‑35 (MQ=255)
                         tatGCGCATCAGCCGATGACGCCAAAAGTTATCGa           >  1:15927074/1‑35 (MQ=255)
                         tatGCGCATCAGCCGATGACGCCAAAAGTTATCGa           >  1:18844335/1‑35 (MQ=255)
                          atccccacCAGCCGATGACGCCAAAAGTTATCGAt          >  1:3107425‑M1/9‑35 (MQ=255)
                          atGCGCATCAGCCGATGACTCCAAAAGTTATCGAt          >  1:9213240/1‑35 (MQ=255)
                           tccccacCAGCCGATGACGCCAAAAGTTATCGATg         >  1:6573006‑M1/8‑35 (MQ=255)
                           tGCGCATCAGCCGATGACGCCAAAAGTTATCGATg         >  1:12192556/1‑35 (MQ=255)
                            gcccacCAGCCGATGACGCCAAAAGTTATCGATGa        >  1:10834876‑M1/7‑35 (MQ=255)
                             cgcacCAGCCGATGACGCCAAAAGTTATCGATGaa       >  1:17650293‑M1/6‑35 (MQ=255)
                             cgcATCAGCCGATGACGCCAAAAGTTATCGATGaa       >  1:16838713/1‑35 (MQ=255)
                              gcATCAGCCGATGACGCCAAAAGTTATCGATGaaa      >  1:11113586/1‑35 (MQ=255)
                               cgcCAGCCGATGACGCCAAAAGTTATCGATGAAAt     >  1:6989929‑M1/4‑35 (MQ=255)
                               cccCAGCCGATGACGCCAAAAGTTATCGATGAAAt     >  1:12782306‑M1/4‑35 (MQ=255)
                               cccCAGCCGATGACGCCAAAAGTTATCGATGAAAt     >  1:15803974‑M1/4‑35 (MQ=255)
                               cacCAGCCGATGACGCCAAAAGTTATCGATGAAAt     >  1:55186‑M1/4‑35 (MQ=255)
                               cATCAGCCGATGACGCCAAAAGTTATCGATGAAAt     >  1:13393417/1‑35 (MQ=255)
                                ccCAGCCGATGACGCCAAAAGTTATCGATGAAATg    >  1:13183051‑M1/3‑35 (MQ=255)
                                 tCAGCCGATGACGCCAAAAGTTATCGATGAAATGc   >  1:11464877/1‑35 (MQ=255)
                                 tCAGCCGATGACGCCAAAAGTTATCGATGAAATGc   >  1:19645409/1‑35 (MQ=255)
                                 cCAGCCGATGACGCCAAAAGTTATCGATGAAATGc   >  1:4689733‑M1/2‑35 (MQ=255)
                                  CAGCCGATGACGCCAAAAGTTATCGATGAAATGCa  >  1:12319202‑M1/1‑35 (MQ=255)
                                  CAGCCGATGACGCCAAAAGTTATCGATGAAATGCa  >  1:1301884‑M1/1‑35 (MQ=255)
                                  CAGCCGATGACGCCAAAAGTTATCGATGAAATGCa  >  1:7803790‑M1/1‑35 (MQ=255)
                                  CAGCCGATGACGCCAAAAGTTATCGATGAAATGCa  <  1:15243795‑M1/35‑1 (MQ=255)
                                  CAGCCGATGACGCCAAAAGTTATCGATGAAATGCa  >  1:19705117‑M1/1‑35 (MQ=255)
                                  |                                  
GATTTTTGCAGAGATTGAACGTAAATATGCGCATCAGCCGATGACGCCAAAAGTTATCGATGAAATGCA  >  REL606/790622‑790690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.