New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3092326 =61 (0.590)23 (0.240) 8/44 NT 23.7% coding (505/927 nt) yqhG hypothetical protein
?REL606 4085858 = 92 (0.980)intergenic (+56/‑93) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F

Only 100 of 302 total aligned reads displayed.

TAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG  >  REL606/4085824‑4085888
                                  |                              
tgaccatgtggtttcttcatcctcagtaaggctgg                                >  1:6790379‑M2/35‑35 (MQ=255)
tgaccatgtggtttcttcatcctcagtaaggctgg                                >  1:4962658‑M2/35‑35 (MQ=255)
tgaccatgtggtttcttcatcctcagtaaggctgg                                >  1:1719083‑M2/35‑35 (MQ=255)
tgaccatgtggtttcttcatcctcagtaaggctgg                                >  1:17308888‑M2/35‑35 (MQ=255)
tAGACACCATCCCTGTCTTCCCCCACATGATGTgg                                >  1:5199534/1‑35 (MQ=255)
tAGACACCATCCCTGTCTTCCCCCACATGATGTgg                                <  1:11559205/35‑1 (MQ=255)
tAGACACCATCCCTGTCTTCCCCCACATGATGTgg                                <  1:18697059/35‑1 (MQ=255)
tAGACACCATCCCTGTCTTCCCACACATGATGTgg                                <  1:18510542/35‑1 (MQ=255)
gttcaaagagttcggcaacaaaggcttccggctgg                                >  1:19893287‑M2/35‑35 (MQ=255)
gttaatcagaccattggtcgagctatcgtggcTgg                                <  1:6552748‑M1/3‑1 (MQ=255)
gttaatcagaccattggtcgagctatcgtggcTgg                                <  1:15435378‑M1/3‑1 (MQ=255)
gttaatcagaccattggtcgagctatcgtggcTgg                                <  1:10238223‑M1/3‑1 (MQ=255)
 gaccatgtggtttcttcatcctcagtaaggctggg                               >  1:8750485‑M2/34‑35 (MQ=255)
 cgacgcgcagttccctccgcgatggcctggctggg                               >  1:10384456‑M2/34‑35 (MQ=255)
 cgacgcgcagttccctccgcgatggcctggctggg                               >  1:4614712‑M2/34‑35 (MQ=255)
 aGACACCATCCCTGTCTTCCCCCACATGATGTggg                               <  1:17594398/35‑1 (MQ=255)
 aGACACCATCCCTGTCTTCCCCCACATGATGTggg                               >  1:17507439/1‑35 (MQ=255)
 aGACACCATCCCTGTCTTCCCCCACATGATGTggg                               <  1:362459/35‑1 (MQ=255)
  tcaaagagttcggcaacaaaggcttccggctgggg                              >  1:12228793‑M2/33‑35 (MQ=255)
  taatcagaccattggtcgagctatcgtggcTgggg                              <  1:9589721‑M1/5‑1 (MQ=255)
  gacgcgcagttccctccgcgatggcctggctgggg                              >  1:12083878‑M2/33‑35 (MQ=255)
   ccatgtggtttcttcatcctcagtaaggctggggg                             >  1:15013449‑M2/32‑35 (MQ=255)
   ccatgtggtttcttcatcctcagtaaggctggggg                             >  1:2238830‑M2/32‑35 (MQ=255)
   ccatgtggtttcttcatcctcagtaaggctggggg                             >  1:10698812‑M2/32‑35 (MQ=255)
   caaagagttctgcaacaaaggcttccggctggggg                             >  1:19560510‑M2/32‑35 (MQ=255)
   caaagagttcggcaacaaaggcttccggctggggg                             >  1:8172736‑M2/32‑35 (MQ=255)
   acgcgcagttccctccgcgatggcctggctggggg                             >  1:1197586‑M2/32‑35 (MQ=255)
   acacCATCCCTGTCTTCCCCCACATGATGTggggg                             <  1:11644029/35‑1 (MQ=255)
    cgcgcagttccctccgcgatggcctggctgggggg                            >  1:8349529‑M2/31‑34 (MQ=255)
    cacCATCCCTGTCTTCCCCCACATGATGTgggggg                            >  1:3718180/1‑34 (MQ=255)
    cacCATCCCTGTCTTCCCCCACATGATGTGGGGGt                            <  1:74153/35‑1 (MQ=255)
    aaagagttcggcaacaaaggcttccggctgggggg                            >  1:6171822‑M2/31‑34 (MQ=255)
     tcagaccattggtcgagctatcgtggcTGGGGGtt                           <  1:14000037‑M1/8‑1 (MQ=255)
     atgtggtttcttcatcctcagtaaggctggggttg                           >  1:7815673‑M2/30‑32 (MQ=255)
     acCATCCCTGTCTTCCCCCACATGATGTggggggt                           >  1:18988255/1‑33 (MQ=255)
     acCATCCCTGTCTTCCCCCACATGATGTGGGGGtt                           <  1:16204576/35‑1 (MQ=255)
     acCATCCCTGTCTTCCCCCACATGATGTGGGGGtt                           <  1:19117474/35‑1 (MQ=255)
     acCATCCCTGTCTTCCCCCACATGATGTGGGGGtt                           <  1:14829896/35‑1 (MQ=255)
      tgtggtttcttcatcctcagtaaggctgGGggtgt                          >  1:3800232‑M2/29‑33 (MQ=255)
      ccATCCCTGTCTTCCCCCACATGATGTGGGGGttt                          <  1:3133481/35‑1 (MQ=255)
      cagaccattggtcgagctatcgtggcTGGGGGttt                          <  1:15158048‑M1/9‑1 (MQ=255)
      agagttcggcaacaaaggcttccggctgGGGGttt                          >  1:8821663‑M2/29‑35 (MQ=255)
       gcagttccctccgcgatggcctggctgGGGGgttt                         >  1:1968520‑M2/28‑35 (MQ=255)
       gagttcggcaacaaatgcttccggctgGGGGtttt                         >  1:4014834‑M2/28‑35 (MQ=255)
       gagttcggcaacaaaggcttccggctgGGGGtttt                         >  1:10554707‑M2/28‑35 (MQ=255)
       cATCCCTGTCTTCCCCCACATGATGTGGGGGtttt                         <  1:695162/35‑1 (MQ=255)
       cATCCCTGTCTTCCCCCACATGATGTGGGGGgttt                         >  1:2884248/1‑35 (MQ=255)
       agaccattggtcgagctatcgtggcTGGGGGtttt                         <  1:20032548‑M1/10‑1 (MQ=255)
        tggtttcttcatcctcagtaaggctgGGGGttttt                        >  1:11784946‑M2/27‑35 (MQ=255)
        gcaaggctatttatggtgcggatggGGGGGttttt                        >  1:16963552‑M2/26‑35 (MQ=255)
        agttcggcaacaaagtcttccggctgGGGGttttt                        >  1:10958569‑M2/27‑35 (MQ=255)
        aTCCCTGTCTTCCCCCACATGATGTGGGGGttttt                        >  1:8522963/1‑35 (MQ=255)
        aTCCCTGTCTTCCCCCACATGATGTGGGGGttttt                        <  1:5340725/35‑1 (MQ=255)
        aTCCCTGTCTTCCCCCACATGATGTGGGGGttttt                        <  1:15878535/35‑1 (MQ=255)
        aTCCCTGTCTTCCCCCACATGATGTGGGGGgtttt                        >  1:18623174/1‑35 (MQ=255)
        aTCCCTGTCTTCCCCCACATGATGTGGGGGgtttt                        >  1:10046580/1‑35 (MQ=255)
         ggtttcttcatcctcagtaaggctgGGGTtttttt                       >  1:9421558‑M2/26‑35 (MQ=255)
         caaggctatttatggtgcggatggGGGGGtttttt                       >  1:20613145‑M2/25‑35 (MQ=255)
         caaggctatttatggtgcggatggGGGGGtttttt                       >  1:13132634‑M2/25‑35 (MQ=255)
          gtttcttcatcctcagtaaggctgGGGGttttttt                      >  1:7969943‑M2/25‑35 (MQ=255)
          gtttcttcatcctcagtaaggctgGGGGtcttttt                      >  1:17830888‑M2/25‑35 (MQ=255)
           tcggcaacaaaggcttccggctgGGGggtttttta                     >  1:475822‑M2/24‑34 (MQ=255)
           tcggcaacaaaggcttccggctgGGGGtttttttt                     >  1:1857658‑M2/24‑35 (MQ=255)
           ccTGTCTTCCCCCACATGATGTGGGGGgttttttt                     >  1:11068382/1‑35 (MQ=255)
           ccTGTCTTCCCCCACATGATGTGGGGGgttttttt                     >  1:10060995/1‑35 (MQ=255)
           cattggtcgagctatcgtggcTGGTGGtttttttt                     <  1:15385062‑M1/14‑1 (MQ=255)
           cattggtcgagctatcgtggcTGGGGattttttta                     <  1:12278591‑M1/14‑2 (MQ=255)
           cattggtcgagctatcgtggcTGGGGGtttttttt                     <  1:11234372‑M1/14‑1 (MQ=255)
            ttcttcatcctcagtaaggctgGGGgttttttttt                    >  1:6902834‑M2/23‑34 (MQ=255)
            ttcttcatcctcagtaaggctgGGGgtattttttt                    >  1:4182515‑M2/23‑34 (MQ=255)
            ggctatttatggtgcggatggGGGGgttttttttt                    >  1:5677434‑M2/22‑34 (MQ=255)
            cTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTa                    <  1:274646/35‑1 (MQ=255)
            cTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTa                    <  1:14284519/35‑1 (MQ=255)
            attggtcgagctatcgtggcTGGGGgtttcttttt                    <  1:4561742‑M1/15‑2 (MQ=255)
             tGTCTTCCCCCACATGATGTGGGGGtttttttttt                   >  1:2945875/1‑33 (MQ=255)
             tGTCTTCCCCCACATGATGTGGGGGgttttttttt                   >  1:2612994/1‑33 (MQ=37)
             tGTCTTCCCCCACATGATGTGGGGGTTTTTTTTAt                   <  1:9696462/35‑1 (MQ=255)
              gTCTTCCCCCACATGATGTGGGGGTTTTTTTTTTc                  >  1:15656010/1‑35 (MQ=255)
              gTCTTCCCCCACATGATGTGGGGGTTTTTTTTATc                  <  1:14644912/35‑1 (MQ=255)
              gTCTTCCCCCACATGATGTGGGGGGTTTTTTTTTc                  >  1:5485741/1‑35 (MQ=37)
               tCTTCCCCCACATGATGTGGGGGTTTTTTTTATcc                 <  1:16319257/35‑1 (MQ=255)
                cTTCCCCCACATGATGTGGGGGTTTTTTTTATCCt                <  1:6404747/35‑1 (MQ=255)
                cTTCCCCCACATGATGTGGGGGGTTTTTTTATTCt                >  1:20254376/1‑35 (MQ=37)
                 ttCCCCCACATGATGTGGGGGGTTTTTTTTTCCTc               >  1:12719590/1‑35 (MQ=25)
                  tCCCCCACATGATGTGGGGGTTTTTTTATCCTCaa             <  1:16558481/35‑1 (MQ=37)
                   cccccACATGATGTGGGGGTTTTTTTTATCCTCaa             <  1:12930696/35‑1 (MQ=255)
                   cccccACATGATGTGGGGGTTTTTTTTATCCTCaa             >  1:12513393/1‑35 (MQ=255)
                     cccACATGATGTGGGGGTTTTTTTTATCCTCAAtt           <  1:18073537/35‑1 (MQ=255)
                      ccACATGATGTGGGGGTTTTTTTTATCCTCAAttt          <  1:16123998/35‑1 (MQ=255)
                      ccACATGATGTGGGGGTTTTTTTTATCCTCAAttt          <  1:9519151/35‑1 (MQ=255)
                        acaTGATGTGGGGGTTTTTTTTATCCTCAATTTGc        <  1:897353/35‑1 (MQ=255)
                         caTGATGTGGGGGGTTTTTTTATCCTCAATTTGcc       >  1:18414976/1‑35 (MQ=255)
                          atgatgTGGGGGTTTTTTTTATCCTCAATTTGCct      >  1:6009550/1‑35 (MQ=255)
                          atgatgTGGGGGTTTTTTTTATCCTCAATTTGCct      >  1:11886891/1‑35 (MQ=255)
                          atgatgTGGGGGTTTTTTTTATCCTCAATTTGCct      <  1:429445/35‑1 (MQ=255)
                           tgatgTGGGGGTTTTTTTTATCCTCAATTTGCctg     <  1:9121681/35‑1 (MQ=255)
                            gatgtGGGGGTTTTTTTTATCCTCAATTTGCctgc    <  1:3415638‑M2/30‑1 (MQ=255)
                             atgtGGGGGTTTTTTTTATCCTCAATTTGCctgct   >  1:17105610‑M2/5‑35 (MQ=255)
                             atgtGGGGGTTTTTTTTATCCTCAATTTGCctgct   <  1:1324511‑M2/31‑1 (MQ=255)
                              tgtGGGGGTTTTTTTTATCCTCAATTTGCctgctg  <  1:13485924‑M2/32‑1 (MQ=255)
                                  |                              
TAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG  >  REL606/4085824‑4085888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.