New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 225795 =119 (1.160)11 (0.130) 3/40 NT 13.7% coding (123/573 nt) gmhB hypothetical protein
?REL606 2126049 = 40 (0.470)coding (187/1041 nt) gatD galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding

TCATCAACACCGGATCCCACCGCATCAATATAGCCGCTAAATTCATGGCCTAACGTTATTGGATAATAA  >  REL606/2126015‑2126083
                                  |                                  
tcatcaACACCGGATCCCACCGCATCAATATAGcc                                    >  1:19829686/1‑35 (MQ=255)
tcatcaACACCGGATCCCACCGCATCAATATAGcc                                    >  1:14574338/1‑35 (MQ=255)
 catcaACACCGGATCCCACCGCATCAATATAGCCg                                   >  1:4174212/1‑35 (MQ=255)
 catcaACACCGGATCCCACCGCATCAATATAGCCg                                   >  1:7151373/1‑35 (MQ=255)
 catcaACACCGGATCCCACCGCATCAATATAGCCg                                   >  1:7911390/1‑35 (MQ=255)
  ctaccaccagcgcaaaccccattttttttagcccg                                  >  1:13195316‑M2/33‑33 (MQ=255)
  atcaACACCGGATCCCACCGCATCAATATAGCCGc                                  >  1:15882252/1‑35 (MQ=255)
  atcaACACCGGATCCCACCGCATCAATATAGCCGc                                  >  1:5622929/1‑35 (MQ=255)
  atcaACACCGGATCCCACCGCATCAATATAGCCGc                                  >  1:4838856/1‑35 (MQ=255)
     aaCACCGGATCCCACCGCATCAATATAGNNGCTnn                               >  1:20258524/1‑35 (MQ=255)
     aaCACCGGATCCCACCGCATCAATATAGCCGCTaa                               >  1:5105783/1‑35 (MQ=255)
     aaCACCGGATCCCACCGCATCAATATAGCCGCTaa                               >  1:3958496/1‑35 (MQ=255)
     aaCACCGGATCCCACCGCATCAATATAGCCGCTaa                               >  1:7667275/1‑35 (MQ=255)
     aaCACCGGATCCCACCGCATCAATATAGCCGCTaa                               >  1:14706650/1‑35 (MQ=255)
      acacCGGATCCCACCGCATCAATATAGCCGCTaaa                              >  1:1585281/1‑35 (MQ=255)
       cacCGGATCCCACCGCATCAATATAGCCGCTAAAt                             >  1:2623721/1‑35 (MQ=255)
       cacCGGATCCCACCGCATCAATATAGCCGCTAAAt                             >  1:2107839/1‑35 (MQ=255)
        acCGGATCCCACCGCATCAATATAGCCGCTAAAtt                            >  1:9470851/1‑35 (MQ=255)
        acCGGATCCCACCGCATCAATATAGCCGCTAAAtt                            >  1:1546586/1‑35 (MQ=255)
        acCGGATCCCACCGCATCAATATAGCCGCTAAAtt                            >  1:7795367/1‑35 (MQ=255)
         ccGGATCCCACCGCATCAATATAGCCGCTACATTc                           >  1:2604687/1‑35 (MQ=255)
          cGGATCCCACCGCATCAATATAGCCGCTAAATTCa                          >  1:5235150/1‑35 (MQ=255)
          cGGATCCCACCGCATCAATATAGCCGCTAAATTCa                          >  1:1697171/1‑35 (MQ=255)
           ggATCCCACCGCATCAATATAGCCGCTAAATTCAt                         >  1:4983089/1‑35 (MQ=255)
           ggATCCCACCGCATCAATATAGCCGCTAAATTCAt                         >  1:2939825/1‑35 (MQ=255)
             aTCCCACCGCATCAATATAGCCGCTAAATTCATgg                       >  1:11348757/1‑35 (MQ=255)
             aTCCCACCGCATCAATATAGCCGCTAAATTCATgg                       >  1:5045712/1‑35 (MQ=255)
             aTCCCACCGCATCAATATAGCCGCTAAATTCATgg                       >  1:11742666/1‑35 (MQ=255)
             aTCCCACCGCATCAATATAGCCGCTAAATTCATgg                       >  1:5540568/1‑35 (MQ=255)
             aTCCCACCGCATCAATAGAGCCGCTAAATTCATgg                       >  1:4350719/1‑35 (MQ=255)
              tCCCACCGCATCAATATAGCCGCTTAATTCATGGc                      >  1:5749102/1‑35 (MQ=255)
               cccACCGCATCAATATAGCCGCTAAATTCATGGcc                     >  1:12180969/1‑35 (MQ=255)
               cccACCGCATCAATATAGCCGCTAAATTCATGGcc                     >  1:17457721/1‑35 (MQ=255)
                ccACCGCATCAATATAGCCGCTAAATTCATGGCCt                    >  1:2900309/1‑35 (MQ=255)
                ccACCGCATCAATATAGCCGCTAAATTCATGGCCt                    >  1:12054041/1‑35 (MQ=255)
                 cACCGCATCAATATAGCCGCTAAATTCATGGCCTa                   >  1:9699471/1‑35 (MQ=255)
                 cACCGCATCAATATAGCCGCTAAATTCATGGCCTa                   >  1:9626818/1‑35 (MQ=255)
                 cACCACATTATTTTAGCCGCTAAATTCATGGCCTa                   <  1:8775273/35‑1 (MQ=19)
                  aCCGCATCAATATAGCCGCTAAATTCATGGCCTaa                  >  1:7236790/1‑35 (MQ=255)
                  aCCGCATCAATATAGCCGCTAAATTCATGGCCTaa                  >  1:509325/1‑35 (MQ=255)
                  aCCGCATCAATATAGCCGCTAAATTCATGGCCTaa                  >  1:16708418/1‑35 (MQ=255)
                  aCCGCATCAATATAGCCGCTAAATTCATGGCCTaa                  >  1:18485776/1‑35 (MQ=255)
                   cttattttttttagcCGCTAAATTCATGGCCTAAc                 <  1:2766737‑M2/20‑1 (MQ=255)
                   cccattttttttagcCGCTAAATTCATGGCCTAAc                 <  1:2129625‑M2/20‑1 (MQ=255)
                   ccGCATCAATATAGCCGCTAAATTCATGGCCTAAc                 >  1:101659/1‑35 (MQ=255)
                   ccGCATCAATATAGCCGCTAAATTCATGGCCTAAc                 >  1:19065940/1‑35 (MQ=255)
                    tctttttttttagcCGCTAAATTCATGGCCTAACg                <  1:18420847‑M2/21‑1 (MQ=255)
                    ctattttttttagcCGCTAAATTCATGGCCTAACg                <  1:11136093‑M2/21‑1 (MQ=255)
                    catttttttttagcCGCTAAATTCATGGCCTAACg                <  1:10886374‑M2/21‑1 (MQ=255)
                     gattttttttagcCGCTAAATTCATGGCCTAACGt               <  1:2460108‑M2/22‑1 (MQ=255)
                     gCATCAATATAGCCGCTAAATTCATGGCCTAACGt               >  1:2740731/1‑35 (MQ=255)
                     gCATCAATATAGCCGCTAAATTCATGGCCTAACGt               >  1:14189916/1‑35 (MQ=255)
                     acatttttttagcCGCTAAATTCATGGCCTAACGt               <  1:4233539‑M2/22‑1 (MQ=255)
                      tttttttttagcCGCTAAATTCATGGCCTAACGtt              <  1:9325104‑M2/23‑1 (MQ=255)
                      cATCAATATAGCCGCTAAATTCATGTCCTAACTtt              >  1:14069554/1‑35 (MQ=37)
                       ttttttttagcCGCTAAATTCATGGCCTAACGTTa             <  1:6330035‑M2/24‑1 (MQ=255)
                       ttttttttagcCGCTAAATTCATGGCCTAACGTTa             <  1:4949527‑M2/24‑1 (MQ=255)
                       atatttttagcCGCTAAATTCATGGCCTAACGTTa             <  1:15862848‑M2/24‑1 (MQ=255)
                        tttttttagcCGCTAAATTCATGGCCTAACGTTAt            <  1:9611712‑M2/25‑1 (MQ=255)
                        tCAATATAGCCGCTAAATTCATGGCCTAACGTTAt            >  1:4854225/1‑35 (MQ=255)
                        tCAATATAGCCGCTAAATTCATGGCCTAACGTTAt            >  1:5090940/1‑35 (MQ=255)
                         cAATATAGCCGCTAAATTCATGGCCTAACGTTAtt           >  1:15585286/1‑35 (MQ=255)
                          tttttagcCGCTAAATTCATGGCCTAACGTTATTg          <  1:471850‑M2/27‑1 (MQ=255)
                          tttttagcCGCTAAATTCATGGCCTAACGTTATTg          <  1:4017316‑M2/27‑1 (MQ=255)
                          tttttagcCGCTAAATTCATGGCCTAACGTTATTg          <  1:10008518‑M2/27‑1 (MQ=255)
                          tttttagcCGCTAAATTCATGGCCTAACGTTATTg          <  1:2783275‑M2/27‑1 (MQ=255)
                          tttttagcCGCTAAATTCATGGCCTAACGTTATTg          <  1:15903737‑M2/27‑1 (MQ=255)
                          attttagcCGCTAAATTCATGGCCTAACGTTATTg          <  1:12308943‑M2/27‑1 (MQ=255)
                          aaTATAGCCGCTAAATTCATGGCCTAACGTTATTg          >  1:12505389/1‑35 (MQ=255)
                          aaTATAGCCGCTAAATTCATGGCCTAACGTTATTg          >  1:3492971/1‑35 (MQ=255)
                           ttttagcCGCTAAATTCATGGCCTAACGTTATTgg         <  1:17056460‑M2/28‑1 (MQ=255)
                           ttttagcCGCTAAATTCATGGCCTAACGTTATTgg         <  1:3849649‑M2/28‑1 (MQ=255)
                           atatAGCCGCTAAATTCATGGCCTAACGTTATTgg         >  1:1359019/1‑35 (MQ=255)
                           atatAGCCGCTAAATTCATGGCCTAACGTTATTgg         >  1:7345406/1‑35 (MQ=255)
                            tttagcCGCTAAATTCATGGCCTAACGTTATTGGa        <  1:9061578‑M2/29‑1 (MQ=255)
                            tttagcCGCTAAATTCATGGCCTAACGTTATTGGa        <  1:1335933‑M2/29‑1 (MQ=255)
                            tataGCCGCTAAATTCATGGCCTAACGTTATTGGa        >  1:19826245/1‑35 (MQ=255)
                             ttagcCGCTAAATTCATGGCCTAACGTTATTGGat       <  1:18142902‑M2/30‑1 (MQ=255)
                             ttagcCGCTAAATTCATGGCCTAACGTTATTGGat       <  1:10118338‑M2/30‑1 (MQ=255)
                             ttaccCGCTAAATTCATGGCCTAACGTTATTGGat       <  1:8364050‑M2/30‑1 (MQ=255)
                             ataGCCGCTAAATTCATGGCCTAACGTTATTTGat       >  1:1583656/1‑35 (MQ=255)
                              tagcCGCTAAATTCATGGCCTAACGTTATTGGata      >  1:11297583‑M2/5‑35 (MQ=255)
                              tagcCGCTAAATTCATGGCCTAACGTTATTGGata      >  1:7792099‑M2/5‑35 (MQ=255)
                              tagcCGCTAAATTCATGGCCTAACGTTATTGGata      >  1:7681657‑M2/5‑35 (MQ=255)
                              tagcCGCTAAATTCATGGCCTAACGTTATTGGata      <  1:13497523‑M2/31‑1 (MQ=255)
                               agcCGCTAAATTCATGGCCTAACGTTATTGGataa     <  1:1641078‑M2/32‑1 (MQ=255)
                               agcCGCTAAATTCATGGCCTAACGTTATTGGataa     >  1:3729528‑M2/4‑35 (MQ=255)
                               agcCGCTAAATTCATGGCCTAACGTTATTGGataa     >  1:9802947‑M2/4‑35 (MQ=255)
                                gcCGCTAAATTCATGGCCTAACGTTATTGGataat    >  1:7874243‑M2/3‑35 (MQ=255)
                                gcCGCTAAATTCATGGCCTAACGTTATTGGataat    <  1:9481012‑M2/33‑1 (MQ=255)
                                gcCGCTAAATTCATGGCCTAACGTTATTGGataat    <  1:17589487‑M2/33‑1 (MQ=255)
                                 cCGCTAAATTCATGGCCTAACGTTATTGGataata   <  1:13137163‑M2/34‑1 (MQ=255)
                                 cCGCTAAATTCATGGCCTAACGTTATTGGataata   <  1:7972838‑M2/34‑1 (MQ=255)
                                 cCGCTAAATTCATGGCCTAACGTTATTGGataata   >  1:19760698‑M2/2‑35 (MQ=255)
                                  cGCTAAATTCATGGCCTAACGTTATTGGAtaataa  <  1:13023455/35‑1 (MQ=255)
                                  cGCTAAATTCATGGCCTAACGTTATTGGAtaataa  <  1:15018200/35‑1 (MQ=255)
                                  cGCTAAATTCATGGCCTAACGTTATTGGAtaataa  <  1:9644375/35‑1 (MQ=255)
                                  |                                  
TCATCAACACCGGATCCCACCGCATCAATATAGCCGCTAAATTCATGGCCTAACGTTATTGGATAATAA  >  REL606/2126015‑2126083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.