New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1286707 =97 (0.940)17 (0.210) 5/38 NT 21.4% intergenic (+31/‑152) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein
?REL606 = 4286236 48 (0.590)coding (386/930 nt) alsK D‑allose kinase

Only 100 of 118 total aligned reads displayed.

ACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAG  >  REL606/4286202‑4286270
                                  |                                  
aCCGAGATAGGCCGCCAGAACCAGTTGTTGCGTaa                                    <  1:12587452/35‑1 (MQ=255)
aCCGAGATAGGCCGCCAGAACCAGTTGTTGCGTaa                                    <  1:14299727/35‑1 (MQ=255)
aCCGAGATAGGCCGCCAGAACCAGTTGTTGCGTaa                                    <  1:16445575/35‑1 (MQ=255)
aCCGAGATAGGCCGCCAGAACCAGTTGTTGCGTaa                                    >  1:19040780/1‑35 (MQ=255)
aCCGAGATAGGCCGCCAGAACCAGTTGTTGCGTaa                                    >  1:4172675/1‑35 (MQ=255)
aCCGAGATAGGCCGCCAGAACCAGTTGTTGCGTaa                                    <  1:4756933/35‑1 (MQ=255)
 ccGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAg                                   <  1:10729167‑M2/35‑2 (MQ=255)
 ccGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAg                                   <  1:16471122‑M2/35‑2 (MQ=255)
 ccGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAg                                   <  1:9020873‑M2/35‑2 (MQ=255)
  cGAGATAGGCCGCCAGAACCAGTTGTTGGGTaatg                                  >  1:20420639/1‑33 (MQ=38)
  cGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAgg                                  <  1:10450596‑M2/35‑3 (MQ=255)
  cGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAgg                                  <  1:7478268‑M2/35‑3 (MQ=255)
  cGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAgg                                  >  1:19330625‑M2/1‑33 (MQ=255)
  cGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAgg                                  >  1:18154855‑M2/1‑33 (MQ=255)
  cGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAgg                                  <  1:16854641‑M2/35‑3 (MQ=255)
  cGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAgg                                  >  1:15242602‑M2/1‑33 (MQ=255)
  cGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAgg                                  <  1:6313201‑M2/35‑3 (MQ=255)
   gagaTAGGCCGCCAGAACCAGTTGTTGCGTAAggc                                 <  1:8979058‑M2/35‑4 (MQ=255)
   gagaTAGGCCGCCAGAACCAGTTGTTGCGTAAggc                                 <  1:9574813‑M2/35‑4 (MQ=255)
    ngaTAGGCCGCCAGAACCAGTTGTTGCGTAAggcg                                <  1:11767431‑M2/35‑5 (MQ=255)
    agaTAGGCCGCCAGAACCAGTTGTTGCGTAAggcg                                <  1:4089273‑M2/35‑5 (MQ=255)
    agaTAGGCCGCCAGAACCAGTTGTTGCGTAAggcg                                >  1:12399873‑M2/1‑31 (MQ=255)
    agaTAGGCCGCCAGAACCAGTTGTTGCGTAAggcg                                <  1:12805601‑M2/35‑5 (MQ=255)
    agaTAGGCCGCCAGAACCAGTTGTTGCGTAAggcg                                >  1:11217958‑M2/1‑31 (MQ=255)
     gaTAGGCCGCCAGAACCAGTTGTTGCGTAAggcgg                               <  1:16554‑M2/35‑6 (MQ=255)
     gaTAGGCCGCCAGAACCAGTTGTTGCGTAAggcgg                               <  1:15040646‑M2/35‑6 (MQ=255)
     gaTAGCCCGCCAGAACCAGTTGTTGCGTAAggcgg                               >  1:4185554‑M2/1‑30 (MQ=255)
      aTAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGt                              <  1:7687636/35‑1 (MQ=255)
       tAGGCCGCCAGAACCAGTTGTTGCGTAAggcgggg                             <  1:6799146‑M2/35‑8 (MQ=255)
       tAGGCCGCCAGAACCAGTTGTTGCGTAAggcgggg                             <  1:12547507‑M2/35‑8 (MQ=255)
        aGGCCGCCAGAACCAGTTGTTGCGTAAggcggggt                            <  1:10396277‑M2/35‑9 (MQ=255)
        aGGCCGCCAGAACCAGTTGTTGCGTAAggcggggt                            <  1:13515374‑M2/35‑9 (MQ=255)
        aGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGttt                            <  1:20214237/35‑1 (MQ=255)
        aGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGttt                            <  1:6593734/35‑1 (MQ=255)
         ggCCGCCAGAACCAGTTGTTGCGTAAggcggggtt                           <  1:6858154‑M2/35‑10 (MQ=255)
         ggCCGCCAGAACCAGTTGTTGCGTAAGGCGGtttt                           <  1:8398159/35‑1 (MQ=255)
         ggCCGCCAGAACCAGTTGTTGCGTAAGGCGGtttt                           <  1:13260365/35‑1 (MQ=255)
          gccgccAGAACCAGTTGTTGCGTAAggcggggtta                          <  1:16954289‑M2/35‑11 (MQ=255)
          gacgccAGAACCAGTTGTTGCGTAAGGCGGTTTTc                          <  1:2064644/33‑1 (MQ=255)
           ccgccAGAACCAGTTGTTGCGTAAggcggggtttt                         <  1:7900049‑M2/35‑12 (MQ=255)
           ccgccAGAACCAGTTGTTGCGTAAGGCGGTTTTct                         <  1:13527825/35‑1 (MQ=255)
           ccgccAGAACCAGTTGTTGCGTAAGGCGGTTTTct                         <  1:11880513/35‑1 (MQ=255)
           ccgccAGAACCAGTTGTTGCGTAAGGCGGTTTTct                         <  1:11130012/35‑1 (MQ=255)
           ccgccAGAACCAGTTGTTGCGCAAggcggggtttt                         <  1:18047797‑M2/35‑12 (MQ=255)
            cgccAGAACCAGTTGTTGCGTAAggcgggtttttt                        <  1:1097387‑M2/35‑13 (MQ=255)
            cgccAGAACCAGTTGTTGCGTAAggcggggttttt                        <  1:5177674‑M2/35‑13 (MQ=255)
            cgccAGAACCAGTTGTTGCGTAAGGCGGTTTTcta                        <  1:13278801/35‑1 (MQ=255)
            cgccAGAACCAGTTGTTGCGTAAGGCGGTTTTcta                        <  1:9400947/35‑1 (MQ=255)
            cgccAGAACCAGTTGTTGCGTAAGGCGGTTTTcta                        <  1:20368931/35‑1 (MQ=255)
            cgccAGAACCAGTTGTTGCGTAAGGAGGTTTTcta                        <  1:19143777/35‑1 (MQ=255)
             gccAGAACCAGTTGTTGCGTAAggcgggttttttc                       <  1:2862930‑M2/35‑14 (MQ=255)
             gccAGAACCAGTTGTTGCGTAAggcggggtttttt                       <  1:6588445‑M2/35‑14 (MQ=255)
             gccAGAACCAGTTGTTGCGTAAggcggggtttttc                       <  1:9139820‑M2/35‑14 (MQ=255)
              ccAGAACCAGTTGTTGCGTAAGGCGGTTTTctact                      <  1:14480201/35‑1 (MQ=255)
               ctgAACCAGTTGTTGCGTAAGGCGGTTTTctacta                     <  1:4298003/33‑1 (MQ=255)
               cAGAACCAGTTGTTGCGTAAggcggggtttttttt                     <  1:9088719‑M2/35‑16 (MQ=255)
               cAGAACCAGTTGTTGCGTAAggcggggtttttttc                     <  1:17758393‑M2/35‑16 (MQ=255)
               cAGAACCAGTTGTTGCGTAAggcggggttttttta                     <  1:2220813‑M2/35‑16 (MQ=255)
               cAGAACCAGTTGTTGCGTAAggcggggtttttctt                     <  1:10246583‑M2/35‑16 (MQ=255)
               cAGAACCAGTTGTTGCGTAAggcggggtttttctt                     <  1:13832342‑M2/35‑16 (MQ=255)
               cAGAACCAGTTGTTGCGTAAGGCGGTTTTctacta                     <  1:10514214/35‑1 (MQ=255)
               cAGAACCAGTTGTTGCGTAAGGCGGTTTTctacta                     <  1:1282249/35‑1 (MQ=255)
               cAGAACCAGTTGTTGCGTAAGGCGGTTTTctacta                     <  1:12490027/35‑1 (MQ=255)
               cAGAACCAGTTGTTGAGTAAGGCGGTTTTctacta                     <  1:834174/35‑1 (MQ=255)
                aGAACCAGTTGTTGCGTAAGGCGGTTTTCtactac                    <  1:18050202/35‑1 (MQ=255)
                aGAACCAGTTGTTGCGTAAGGCGGTTTTCtactac                    <  1:14616124/35‑1 (MQ=255)
                 gAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACg                   <  1:14911696/35‑1 (MQ=255)
                  aaCCAGTTGTTGCGTAAGGCGGTTTTCTACTACGt                  <  1:723873/35‑1 (MQ=255)
                  aaCCAGTTGTTGCGTAAGGCGGTTTTCTACTACGt                  <  1:9196631/35‑1 (MQ=255)
                  aaCCAGTTGTTGCGTAAGGCGGTTTTCTACTACGt                  <  1:14254626/35‑1 (MQ=255)
                    ccAGTTGTTGCGTAAGGCGGTTTTCTACTACGTcc                <  1:3726816/35‑1 (MQ=255)
                    ccAGTTGTTGCGTAAGGCGGTTTTCTACTACGTcc                <  1:10504801/35‑1 (MQ=255)
                    ccAGTTGTTGCGTAAGGCGGTTTTCTACTACGTcc                <  1:8536747/35‑1 (MQ=255)
                    ccAGTTGTTGCGTAAGGCGGGGTTTTTCTACGTcc                >  1:8908834/1‑35 (MQ=16)
                     cAGTTGTTGCGTAAGGCGGTTTTCTACTACGTccc               <  1:5140482/35‑1 (MQ=255)
                     cAGTTGTTGCGTAAGGCGGGTTTTTTTTACGTccc               >  1:20079444/1‑35 (MQ=19)
                      aGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCa              <  1:6510846/35‑1 (MQ=255)
                      aGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCa              <  1:10200482/35‑1 (MQ=255)
                      aGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCa              <  1:462923/35‑1 (MQ=255)
                      aGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCa              <  1:14106361/35‑1 (MQ=255)
                      aGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCa              <  1:3235688/35‑1 (MQ=255)
                      aGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCa              <  1:19353396/35‑1 (MQ=255)
                      aGTTGTTGCGTAAGGCGGGTTTTTTTTACTTcccc              >  1:14968449/1‑34 (MQ=12)
                      aGTTGTTGCGTAAGGCGGGTTTTTTCTAACTcccc              >  1:1846271/1‑34 (MQ=12)
                        ttgttgCGTAAGGCGGTTTCCTACTACGTCCCAgg            <  1:5039877/35‑1 (MQ=255)
                            tgCGTAAGGCGGTTTTCTACTACGTCCCAGGagag        <  1:19016352/35‑1 (MQ=255)
                            tgCGTAAGGCGGTTTTCTACTACGTCCCAGGagag        <  1:12347048/35‑1 (MQ=255)
                            tgCGTAAGGCGGTTTTCTACTACGTCCCAGGagag        <  1:10256014/35‑1 (MQ=255)
                             gCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGt       <  1:2689150/35‑1 (MQ=255)
                             gCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGt       <  1:3991149/35‑1 (MQ=255)
                             gCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGt       <  1:14692794/35‑1 (MQ=255)
                             gCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGt       <  1:12112038/35‑1 (MQ=255)
                               gTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTg     <  1:16283055/35‑1 (MQ=255)
                               gTAACGCGGTTTTCTACTACGTCCCAGGAGAGTTg     >  1:2833741/1‑35 (MQ=255)
                                tAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGc    <  1:12144030/35‑1 (MQ=255)
                                 aaGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCa   <  1:4189990/35‑1 (MQ=255)
                                 aaGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCa   <  1:10487913/35‑1 (MQ=255)
                                  aGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAg  <  1:19592071/35‑1 (MQ=255)
                                  aGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAg  <  1:7588346/35‑1 (MQ=255)
                                  aGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAg  <  1:14881778/35‑1 (MQ=255)
                                  |                                  
ACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAG  >  REL606/4286202‑4286270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.