New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2768160116 (1.130)20 (0.210) 7/44 NT 16.8% coding (39/324 nt) ygbE conserved inner membrane protein
?REL606 4085858 = 92 (0.980)intergenic (+56/‑93) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F

Only 100 of 255 total aligned reads displayed.

GTGACCATGTGGTTTCTTCATCCTCAGTAAGGCTGTCGTTATTTGTTAGTGTAATGTTATGGCTATTAC  >  REL606/2768126‑2768194
                                  |                                  
gTGACCATGTGGTTTCTTCATCCTCAGTAAGGCTG                                    >  1:18725541‑M1/1‑35 (MQ=255)
 tGACCATGTGGTTTCTTCATCCTCAGTAAGGCTGt                                   <  1:6987662/35‑1 (MQ=255)
 tGACCATGTGGTTTCTTCATCCTCAGTAAGGCTGg                                   >  1:16085740‑M1/1‑34 (MQ=255)
 tGACCATGTGGTTTCTTCATCCTCAGTAAGGCTGg                                   >  1:1719083‑M1/1‑34 (MQ=255)
 tGACCATGTGGTTTCTTCATCCTCAGTAAGGCTGg                                   >  1:4962658‑M1/1‑34 (MQ=255)
  gACCATGTGGTTTCTTCATCCTCAGTAAGGCTGgg                                  >  1:18614003‑M1/1‑33 (MQ=255)
  gACCATGTGGTTTCTTCATCCTCAGTAAGGCTGgg                                  >  1:8750485‑M1/1‑33 (MQ=255)
  gACCATGTGGTTTCTTCATCCTCAGTAAGGCTGgg                                  >  1:3618251‑M1/1‑33 (MQ=255)
  gACCATGTGGTTTCTTCATCCTCAGTAAGGCTGgg                                  >  1:4685313‑M1/1‑33 (MQ=255)
  gACCATGTGGTTTCTTCATCCTCAGTAAGGCTGTc                                  <  1:15079585/35‑1 (MQ=255)
  gACCATGTGGTTTCTTCATCCTCAGTAAGGCTGTc                                  <  1:7739819/35‑1 (MQ=255)
  gACCATGTGGTTTCTTCATCCTCAGTAAGGCTGTc                                  <  1:7680313/35‑1 (MQ=255)
   aCCATGTGGTTTCTTCATCCTCAGTAAGTCTGTCg                                 >  1:12138923/1‑35 (MQ=255)
   aCCATGTGGTTTCTTCATCCTCAGTAAGGCTGggg                                 >  1:9621143‑M1/1‑32 (MQ=255)
   aCCATGTGGTTTCTTCATCCTCAGTAAGGCTGggg                                 >  1:10110961‑M1/1‑32 (MQ=255)
   aCCATGTGGTTTCTTCATCCTCAGTAAGGCTGTCg                                 <  1:5802201/35‑1 (MQ=255)
   aCCATGTGGTTTCTTCATCCTCAGTAAGGCTGTCg                                 <  1:2107111/35‑1 (MQ=255)
   aCCATGTGGTTTCTTCATCCTCAGTAAGGCTGTCg                                 <  1:19781007/35‑1 (MQ=255)
   aCCATGTGGTTTCTTCATCCTCAGTAAGGCTGTCg                                 <  1:18922708/35‑1 (MQ=255)
    ccATGTGGTTTCTTCATCCTCAGTAAGGCTGTCGt                                <  1:6856352/35‑1 (MQ=255)
    ccATGTGGTTTCTTCATCCTCAGTAAGGCTGTCGt                                <  1:14157909/35‑1 (MQ=255)
     cATGTGGTTTCTTCATCCTCAGTAAGGCTGTCGtt                               <  1:5918294/35‑1 (MQ=255)
     cATGTGGTTTCTTCATCCTCAGTAAGGCTGTCGtt                               <  1:8411126/35‑1 (MQ=255)
     cATGTGGTTTCTTCATCCTCAGTAAGGCTGTCGtt                               <  1:10429746/35‑1 (MQ=255)
     cATGTGGTTTCTTCATCCTCAGTAAGGCTGTCGtt                               <  1:17850571/35‑1 (MQ=255)
     cATGTCGTTTCTTCATCCTCAGTAAGGCTGggggt                               >  1:9937418‑M1/1‑30 (MQ=255)
      aTGTGGTTTCTTCATCCTCAGTAAGGCTGTCGTTa                              <  1:2158198/35‑1 (MQ=255)
      aTGTGGTTTCTTCATCCTCAGTAAGGCTGGCgctt                              >  1:16927148/1‑32 (MQ=38)
       tgtgGTTTCTTCATCCTCAGTAAGGCTGTCGTTAt                             <  1:11825628/35‑1 (MQ=255)
       tgtgGTTTCTTCATCCTCAGTAAGGCTGTCGTTAt                             <  1:7493742/35‑1 (MQ=255)
        gtgGTTTCTTCATCCTCAGTAAGGCTGTCGTTAtt                            <  1:15621894/35‑1 (MQ=255)
         tgGTTTCTTCATCCTCAGTAAGGCTGggggttttt                           >  1:19651193‑M1/1‑26 (MQ=255)
         tgGTTTCTTCATCCTCAGTAAGGCTGggggttttt                           >  1:11784946‑M1/1‑26 (MQ=255)
         tgGTTTCTTCATCCTCAGTAAGGCTGTCGTTAttt                           <  1:14935329/35‑1 (MQ=255)
          ggTTTCTTCATCCTCAGTAAGGCTGgggttttttt                          >  1:9421558‑M1/1‑25 (MQ=255)
          ggTTTCTTCATCCTCAGTAAGGCTGTCGTTATTTg                          <  1:6344509/35‑1 (MQ=255)
          ggTTTCCTCATCCTCAGTAAGGCTGTCGTTATTTg                          <  1:11556251/35‑1 (MQ=255)
           gTTTCTTCATCCTCAGTAAGGCTGgggtttttttt                         >  1:19281010‑M1/1‑24 (MQ=255)
           gTTTCTTCATCCTCAGTAAGGCTGggggttttttt                         >  1:7969943‑M1/1‑24 (MQ=255)
           gTTTCTTCATCCTCAGTAAGGCTGggggttttttt                         >  1:15192530‑M1/1‑24 (MQ=255)
           gTTTCTTCATCCTCAGTAAGGCTGTCGTTATTTGt                         <  1:8332308/35‑1 (MQ=255)
           gTTTCTTCATCCTCAGTAAGGCTGTCGTTATTTGt                         <  1:5310969/35‑1 (MQ=255)
           gTTTCTTCATCCTCAGTAAGGCTGTCGTTATTTGt                         <  1:3330933/35‑1 (MQ=255)
            tttCTTCATCCTCAGTAAGGCTGTCGTTATTTGtt                        <  1:9330761/35‑1 (MQ=255)
            tttCTTCATCCTCAGTAAGGCTGTCGTTATTTGtt                        <  1:10148225/35‑1 (MQ=255)
            tttCTTCATCCTCAGTAAGGCTGTCGTTATTTGtt                        <  1:19844103/35‑1 (MQ=255)
            tttCTTCATCCTCAGTAAGGCTGTAGTTATTTGtt                        <  1:16212123/35‑1 (MQ=255)
             ttcttcATCCTCAGTAAGGCTGTCGTTATTTGTTa                       <  1:13231600/35‑1 (MQ=255)
             ttcttcATCCTCAGTAAGGCTGTCGTTATTTGTTa                       <  1:9786770/35‑1 (MQ=255)
             ttcttcATCCTCAGTAAGGCTGTCGTTATTTGTTa                       <  1:2912719/35‑1 (MQ=255)
              tcttcATCCTCAGTAAGGCTGTCGTTATTTGTTAg                      <  1:12575289/35‑1 (MQ=255)
              tcttcATCCTCAGTAAGGCTGTCGTTATTTGTTAg                      <  1:8285681/35‑1 (MQ=255)
              tcttcATCCTCAGTAAGGCTGTCGTTATTTGTTAg                      <  1:17709491/35‑1 (MQ=255)
               cttcATCCTCAGTAAGGCTGTCGTTATTTGTTAgt                     <  1:4052336/35‑1 (MQ=255)
               cttcATCCTCAGTAAGGCTGTCGTTATTTGTTAgt                     <  1:4745978/35‑1 (MQ=255)
               cttcATCCTCAGTAAGGCTGTCGTTATTTGTTAgt                     <  1:16509320/35‑1 (MQ=255)
                ttcATCCTCAGTAAGGCTGTCGTTATTTGTTAgtg                    <  1:13762817/35‑1 (MQ=255)
                ttcATCCTCAGTAAGGCTGTCGTTATTTGTTAgtg                    <  1:41914/35‑1 (MQ=255)
                 tcATCCTCAGTAAGGCTGTCGTTATTTGTTAgtgt                   <  1:11299540/35‑1 (MQ=255)
                 tcATCCTCAGTAAGGCTGTCGTTATTTGTTAgtgt                   <  1:2552965/35‑1 (MQ=255)
                   aTCCTCAGTAAGGCTGTCGTTATTTGTTAGTGTaa                 <  1:16786934/35‑1 (MQ=255)
                   aTCCTCAGTAAGGCTGTCGTTATTTGTTAGTGTaa                 <  1:3520092/35‑1 (MQ=255)
                   aTCCTCAGTAAGGCTGTCGTTATTTGTTAGTGTaa                 <  1:20046058/35‑1 (MQ=255)
                    tCCTCAGTAAGGCTGTCGTTATTTGTTAGTGTAAt                <  1:20398911/35‑1 (MQ=255)
                     ccTCAGTAAGGCTGTCGTTATTTGTTAGTGTAATg               <  1:12040071/35‑1 (MQ=255)
                     ccTCAGTAAGGCTGTCGTTATTTGTTAGTGTAATg               <  1:4502507/35‑1 (MQ=255)
                      cTCAGTAAGGCTGTCGTTATTTGTTAGTGTAATGt              <  1:10340430/35‑1 (MQ=255)
                      cTCAGTAAGGCTGTCGTTATTTGTTAGTGTAATGt              <  1:15535241/35‑1 (MQ=255)
                      cTCAGTAAGGCTGTCGTTATTTGTTAGTGTAATGt              <  1:3720423/35‑1 (MQ=255)
                       tCAGTAAGGCTGTCGTTATTTGTTAGTGTAATGtt             <  1:13360507/35‑1 (MQ=255)
                       tCAGTAAGGCTGTCGTTATTTGTTAGTGTAATGtt             <  1:20165075/35‑1 (MQ=255)
                        cAGTAAGGCTGTCGTTATTTGTTAGTGTAATGTTa            <  1:2471492/35‑1 (MQ=255)
                         aGTAAGGCTGTCGTTATTTGTTAGTGTAATGTTAt           <  1:4265280/35‑1 (MQ=255)
                         aGTAAGGCTGTCGTTATTTGTTAGTGTAATGTTAt           <  1:17297577/35‑1 (MQ=255)
                          gTAAGGCTGTCGTTATTTGTTAGTGTAATGTTATg          <  1:12634353/35‑1 (MQ=255)
                          gTAAGGCTGTCGTTATTTGTTAGTGTAATGTTATg          <  1:16555857/35‑1 (MQ=255)
                           tAAGGCTGTCGTTATTTGTTAGTGTAATGTTATgg         <  1:15767099/35‑1 (MQ=255)
                           tAAGGCTGTCGTTATTTGTTAGTGTAATGTTATgg         <  1:9198828/35‑1 (MQ=255)
                            aaGGCTGTCGTTATTTGTTAGTGTAATGTTATGGc        <  1:39454/35‑1 (MQ=255)
                            aaGGCTGTCGTTATTTGTTAGTGTAATGTTATGGc        <  1:12804481/35‑1 (MQ=255)
                            aaGGCTGTCGTTATTTGTTAGTGTAATGTTATGGc        <  1:7246517/35‑1 (MQ=255)
                             aGGCTGTCGTTATTTGTTAGTGTAATGTTATGGCt       <  1:6280227/35‑1 (MQ=255)
                             aGGCTGTCGTTATTTGTTAGTGTAATGTTATGGCt       <  1:3113083/35‑1 (MQ=255)
                             aGGCTGTCGTTATTTGTTAGTGTAATGTTATGGCt       <  1:14792843/35‑1 (MQ=255)
                             aGGCTGTCGTTATTTGTTAGTGTAATGTTATGGCt       <  1:8962682/35‑1 (MQ=255)
                             aGGCTGTCGTTATTTGTTAGTGTAATGTTATGGCt       <  1:10765447/35‑1 (MQ=255)
                              ggCTGTCGTTATTTGTTAGTGTAATGTTATGGCTa      <  1:20302993/35‑1 (MQ=255)
                              ggCTGTCGTTATTTGTTAGTGTAATGTTATGGCTa      <  1:1410323/35‑1 (MQ=255)
                              ggCTGTCGTTATTTGTTAGTGTAATGTTATGGCTa      <  1:6521519/35‑1 (MQ=255)
                              ggCTGTCGTTATTTGTTAGTGTAATGTTATGGCTa      <  1:17471059/35‑1 (MQ=255)
                               gCTGTCGTTATTTGTTAGTGTAATGTTATGGCTaa     >  1:18381394/1‑34 (MQ=255)
                               gCTGTCGTTATTTGTTAGTGTAATGTTATGGCTaa     >  1:1233107/1‑34 (MQ=255)
                               gCTGTCGTTATTTGTTAGTGTAATGTTATGGCTAt     <  1:18056258/35‑1 (MQ=255)
                                cTGTCGTTATTTGTTAGTGTAATGTTATGGCTaaa    >  1:13653457/1‑33 (MQ=255)
                                cTGTCGTTATTTGTTAGTGTAATGTTATGGCTAtt    <  1:11237860/35‑1 (MQ=255)
                                cTGTCGTTATTTGTTAGTGTAATGTTATGGCTAtt    <  1:9250377/35‑1 (MQ=255)
                                 tGTCGTTATTTGTTAGTGTAATGTTATGGCTaaaa   >  1:7975575/1‑32 (MQ=255)
                                 tGTCGTTATTTGTTAGTGTAATGTTATGGCTaaaa   >  1:10562568/1‑32 (MQ=255)
                                 tGTCGTTATTTGTTAGTGTAATGTTATGGCTATTa   <  1:120726/35‑1 (MQ=255)
                                  gTCGTTATTTGTTAGTGTAATGTTATGGCTATTAc  <  1:3842937/35‑1 (MQ=255)
                                  |                                  
GTGACCATGTGGTTTCTTCATCCTCAGTAAGGCTGTCGTTATTTGTTAGTGTAATGTTATGGCTATTAC  >  REL606/2768126‑2768194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.