New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2671676 =67 (0.650)9 (0.120) 3/36 NT 13.7% coding (328/594 nt) grpE heat shock protein
?REL606 4487631 = 63 (0.820)coding (453/1119 nt) yjhC predicted oxidoreductase

CCGGTGATTGATAGCCTGGATCGTGCGCTGGAAGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2671715‑2671676
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAG  >  REL606/4487631‑4487664
                                                                          
CCGGTGATTGATAGCCTGGATCGTGCGCTGGAAGT                                         <  1:5011810/35‑1
CCGGTGATTGATAGCCTGGATCGTGCGCTGGAAGT                                         <  1:5360594/35‑1
 CGGTGATTGATAGCCTGGATCGTGCGCTGGAAGTG                                        >  1:9748743/1‑35
 CGGTGATTGATAGCCTGGATCGTGCGCTGGAAGTG                                        >  1:14397098/1‑35
  GGTGATTGATAGCCTGGATCGTGCGCTGGAAGTGG                                       <  1:16147248/35‑1
  GGTGATTGATAGCCTGGATCGTGCGCTGGAAGTGG                                       >  1:12429366/1‑35
   GTGATTGATAGCCTGGATCGTGCGCTGGAAGTGGC                                      <  1:2605182/35‑1
   GTGATTGATAGCCTGGATCGTGCGCTGGAAGTGGC                                      <  1:7091360/35‑1
    TGATTGGTAGCCTGGATCGTGCGCTGGAAGTGGCT                                     <  1:18168683/35‑1
    TGATTGATAGCCTGGATCGTGCGCTGGAAGTGGCT                                     <  1:2382873/35‑1
    TGATTGATAGCCTGGATCGTGCGCTGGAAGTGGCT                                     <  1:1535150/35‑1
    TGATTGATAGCCTGGATCGTGCGCTGGAAGTGGCT                                     <  1:15151276/35‑1
    TGATTGATAGCCTGGATCGTGCGCTGGAAGTGGCT                                     <  1:5831382/35‑1
    TGATTGATAGCCTGGATCGTGCGCTGGAAGTGGCT                                     <  1:10874045/35‑1
    TGATTGATAGCCTGGATCGTGCGCTGGAAGTGGCT                                     >  1:980350/1‑35
     nnTTGNNAGCCTGGATCGTGCGCTGGAAGTGGCTG                                    <  1:19714097/33‑1
     GATTGATAGCCTGGATCGTGCGCTGGAAGTGGCTG                                    >  1:15643978/1‑35
     GATTGATAGCCTGGATCGTGCGCTGGAAGTGGCTG                                    >  1:13942139/1‑35
     GATTGATAGCCTGGATCGTGCGCTGGAAGTGGCTG                                    <  1:7721059/35‑1
     GATTGATAGCCTGGATCGTGCGCTGGAAGTGGCTG                                    >  1:8443188/1‑35
     GATTGATAGCCTGGATCGTGCGCTGGAAGTGGCTG                                    <  1:9585492/35‑1
      ATTGATAGCCTGGATCGTGCGCTGGAAGTTGCTGG                                   >  1:4234472/1‑35
      ATTGATAGCCTGGATCGTGCGCTGGAAGGGGCTGG                                   >  1:10651731/1‑35
       TTGATAGCCTGGATCGTGCGCTGGAAGTGGCTGGG                                  >  1:15979654/1‑35
       TTGATAGCCTGGATCGTGCGCTGGAAGGGGCTGGG                                  >  1:6040154/1‑35
        TGATAGCCTGGATCGTGCGCTGGAAGTGGCTGGGA                                 >  1:12690684/1‑35
         GATAGCCTGGATCGTGCGCTGGAAGTGGCTGGGga                                >  1:17651722/1‑33
         GATAGCCTGGATCGTGCGCTGGAAGTGGCTGGAAA                                >  1:6839753/1‑35
           TAGCCTGGATCGTGCGCTGGAAGTGGCTGGGAAAA                              >  1:291729/1‑35
            AGCCTGGATCGTGCGCTGGAAGTGGCTGGGGAAAa                             >  1:3222987/1‑34
            AGCCTGGATCGTGCGCTGGAAGTGGCTGGGGAAAa                             >  1:402973/1‑34
            AGCCTGGATCGTGCGCTGGAAGTGGCTGGGAAAga                             >  1:6032038/1‑33
            AGCCTGGATCGTGCGCTGGAAGTGGCTGGGAAAAC                             >  1:4655392/1‑35
             GCCTGGATCGTGCGCTGGAAGTGGCTGGGAAAAgc                            >  1:4092945/1‑33
              CCTGGATCGTGCGCTGGAAGTGGCTGGGAAAAatc                           >  1:5657704/1‑32
              CCTGGATCGTGCGCTGGAAGTGGCTGGGAAAAaca                           >  1:7584250/1‑32
              CCTGGATCGTGCGCTGGAAGTGGCTGGGAAAAGAA                           >  1:3129425/1‑35
                 GGATCGTGCGCTGGAAGTGGCTGGGAAAACAAAac                        >  1:4401152/1‑33
                                  TGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGA       <  1:815512/35‑1
                                  TGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGA       <  1:11680106/35‑1
                                  TGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGA       >  1:18165997/1‑35
                                  TGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGA       >  1:6843980/1‑35
                                  TGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGA       <  1:25306/35‑1
                                   GGCTGGGAAAACAAACAAGAGAGATTTTCCTGGAA      >  1:14132382/1‑35
                                   GGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAA      <  1:20089557/35‑1
                                   GGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAA      >  1:8432220/1‑35
                                   GGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAA      >  1:12096305/1‑35
                                   GGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAA      >  1:5995362/1‑35
                                   GGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAA      >  1:11639073/1‑35
                                   GGCTGGGAAAACAAACAAGAGAGAATTTCCTGGAA      <  1:16247391/35‑1
                                    GCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAA     >  1:2486165/1‑35
                                    GCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAA     >  1:380091/1‑35
                                     CTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAA    >  1:2542724/1‑35
                                     CTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAA    <  1:817492/35‑1
                                     CTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAA    >  1:8097009/1‑35
                                      TGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAA   <  1:9017312/35‑1
                                      TGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAA   >  1:8286238/1‑35
                                      TGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAA   <  1:12354146/35‑1
                                      TGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAA   >  1:6813643/1‑35
                                      TGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAA   >  1:18644183/1‑35
                                      TGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAA   <  1:3755748/35‑1
                                      TGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAA   <  1:3809230/35‑1
                                       GGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAG  <  1:19773576/35‑1
                                       GGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAG  >  1:5482224/1‑35
                                       GGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAG  <  1:9630076/35‑1
                                       GGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAG  >  1:9662718/1‑35
                                       GGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAG  >  1:18924994/1‑35
                                                                          
CCGGTGATTGATAGCCTGGATCGTGCGCTGGAAGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2671715‑2671676
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAG  >  REL606/4487631‑4487664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.