New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2169426 =52 (0.510)13 (0.160) 6/38 NT 13.2% coding (329/1158 nt) yehY predicted transporter subunit: membrane component of ABC superfamily
?REL606 = 2730083 130 (1.600)coding (2203/2253 nt) hypF carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases

GCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2169464‑2169426
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGTG  <  REL606/2730083‑2730050
                                                                         
GCAAAATGGCAGTGCGCTGGCGCGTCCCAGCCTCG                                        <  1:10543329/35‑1
GCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCG                                        <  1:19329885/35‑1
GCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCG                                        <  1:8845332/35‑1
 CAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGG                                       <  1:18211551/35‑1
 CAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGG                                       <  1:13349291/35‑1
  AAAATGGCAGTGCGCTGGCGCGTCCCAGCCTCGGC                                      <  1:16232323/35‑1
    AATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAG                                    <  1:12966831/35‑1
         CAGTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGg                               >  1:8567580/1‑34
         CAGTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGT                               >  1:370236/1‑35
          AGTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGTT                              >  1:17745148/1‑35
           GTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGgtt                             >  1:7681731/1‑32
           GTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGTTt                             >  1:3115019/1‑34
           GTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGTTt                             >  1:13530348/1‑34
           GTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGTTt                             >  1:13515520/1‑34
           GTGCGCTGGCGCGTACCAGCCTCGGCAGGGGGTTt                             >  1:13510748/1‑34
            TGCGCTGGCGCGTACCAGCCTCGGCAGGGGGTTtt                            >  1:12289531/1‑33
             GCGCTGGCGCGTACCAGCCTCGGCAGGGGGTTTTT                           >  1:10311820/1‑35
              CGCTGGCGCGTACCAGCCTCGGCAGGGGGTTTTTG                          >  1:4718825/1‑35
              CGCTGGCGCGTACCAGCCTCGGCAGGGGGTTTTTG                          >  1:19252145/1‑35
               GCTGGCGCGTACCAGCCTCGGCAGGGGGTTTTTGC                         >  1:9621149/1‑35
                CTGGCGCGTACCAGCCTCGGCAGGGGGTTTTTGCT                        >  1:774022/1‑35
                 TGGCGCGTACCAGCCTCGGCAGGGGGTTCTTGCTG                       >  1:15013945/1‑35
                  GGCGCGTACCAGCCTCGGCAGGGGGTTTTTGCTGg                      >  1:18836726/1‑34
                                  GGCAGGGTGTTATTGCTGCGGCGCGTTGGTTAGCG      >  1:12800169/1‑35
                                  GGCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCG      <  1:2955831/35‑1
                                  GGCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCG      <  1:20274533/35‑1
                                  GGCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCG      <  1:10681289/35‑1
                                  GGCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCG      <  1:7759532/35‑1
                                  GGCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCG      <  1:1603213/35‑1
                                  GGCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCG      <  1:15615628/35‑1
                                   gctGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG     <  1:20357440/32‑1
                                   GCAGGGGGTTATTGCTGCGGCGCGTTTGTTAGCGG     <  1:6818973/35‑1
                                   GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGN     <  1:3614775/35‑1
                                   GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG     <  1:17638924/35‑1
                                   GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG     >  1:11547188/1‑35
                                   GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG     <  1:5018383/35‑1
                                   GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG     <  1:6185667/35‑1
                                   GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG     <  1:4242470/35‑1
                                   GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG     <  1:16129514/35‑1
                                   GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG     <  1:7294752/35‑1
                                   GCAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGG     >  1:12753027/1‑35
                                   GCAGGGGGTTATTGCTGCGGCGCGTTGGGTAGCGt     >  1:395554/1‑34
                                   GCAGGGGGTTATTGCTGCGGCGCGTTGGGTAGCGG     >  1:1958201/1‑35
                                    CAGGGGGTTATTGCTTCGGCGCGTTGGTTAGCGGG    >  1:19162950/1‑35
                                    CAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGG    >  1:4658110/1‑35
                                    CAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGG    <  1:4762178/35‑1
                                    CAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGG    <  1:8509754/35‑1
                                    CAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGG    >  1:13875931/1‑35
                                    CAGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGG    >  1:12286047/1‑35
                                     AGGGGTTTATTGCTGCGGCGCGTTGGTTAGCGGGT   >  1:1637456/1‑35
                                     AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT   >  1:288838/1‑35
                                     AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT   <  1:20580416/35‑1
                                     AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT   >  1:19484764/1‑35
                                     AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT   >  1:1751562/1‑35
                                     AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT   >  1:5969588/1‑35
                                     AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT   <  1:1486409/35‑1
                                     AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT   <  1:13425362/35‑1
                                     AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT   <  1:9640583/35‑1
                                     AGGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGT   <  1:7994208/35‑1
                                      GGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGgg  >  1:970966/1‑33
                                      GGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGgg  >  1:10030078/1‑33
                                      GGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGTG  <  1:436702/35‑1
                                      GGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGTG  <  1:18203661/35‑1
                                      GGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGTG  <  1:1217976/35‑1
                                      GGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGTG  >  1:1178477/1‑35
                                                                         
GCAAAATGGCAGTGCGCTGGCGCGTACCAGCCTCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2169464‑2169426
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagGGGGTTATTGCTGCGGCGCGTTGGTTAGCGGGTG  <  REL606/2730083‑2730050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.