New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2176060 = | 63 (0.610) | 6 (0.080) | 3/36 | NT | 7.3% | coding (49/933 nt) | pbpG | D‑alanyl‑D‑alanine endopeptidase |
? | REL606 | 3882315 = | 105 (1.360) | coding (103/816 nt) | atpB | F0F1 ATP synthase subunit A |
TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG‑‑‑‑‑‑‑‑‑ < REL606/2176099‑2176060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGGGGGTTTT > REL606/3882315‑3882323 TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT < 1:9496217/35‑1 TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT > 1:2565770/1‑35 TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT < 1:3552068/35‑1 TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT < 1:6978025/35‑1 TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT < 1:17013222/35‑1 TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT < 1:12371155/35‑1 TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCT > 1:14923499/1‑35 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG > 1:2510682/1‑35 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG < 1:18233720/35‑1 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG > 1:18189799/1‑35 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG < 1:17702392/35‑1 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG > 1:17531771/1‑35 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG < 1:604859/35‑1 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG < 1:6179655/35‑1 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG > 1:11933531/1‑35 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG < 1:10531368/35‑1 TTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTG < 1:890434/35‑1 TTCGAGTTTCTTTATTTAGCCTGGCACTGATGCTG < 1:12426024/35‑1 TCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGG < 1:6870002/35‑1 TCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGG < 1:18344017/35‑1 TCGAGTTTATTTATTTAGCCTGGCCCTGATGCTGG < 1:20169848/35‑1 CGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGC < 1:4803610/35‑1 CGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGC > 1:4318806/1‑35 CGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGC < 1:11812826/35‑1 CGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGC > 1:10586280/1‑35 CGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGC < 1:7545343/35‑1 CGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGC < 1:10381618/35‑1 GAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCT < 1:240346/35‑1 GAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCT > 1:19238935/1‑35 GAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCT > 1:17831954/1‑35 nGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG < 1:9635932/34‑1 AGTTTCTTTATTTAGCCTGGCCCTGATGCTGTCTG > 1:4756469/1‑35 AGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG > 1:9588893/1‑35 AGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG > 1:20149705/1‑35 AGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG > 1:18663671/1‑35 AGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG > 1:3695799/1‑35 AGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG < 1:1363674/35‑1 GTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTGG > 1:15758682/1‑35 TCTTTATTTAGCCTGGCCCTGATGCTGGCTGGGGG > 1:2926373/1‑35 TTTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGg > 1:8719839/1‑34 TTTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGg > 1:18436694/1‑34 TTTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGg > 1:783790/1‑34 TTTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGg > 1:15309591/1‑34 TTTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGg > 1:5785664/1‑34 TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGgg > 1:10562893/1‑33 TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGgg > 1:11191453/1‑33 TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGgg > 1:6914071/1‑33 TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGgg > 1:14926838/1‑33 TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGgg > 1:4032022/1‑33 TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGgg > 1:2391018/1‑33 TTATTTAGCCTGGCCCTGATGCTGGCTGGGGGGTT > 1:9544601/1‑35 TATTTAGCCTGGCCCTGATGCTGGCTGGGGGGggt > 1:2238730/1‑32 TATTTAGCCTGGCCCTGATGCTGGCTGGGGGGggg > 1:7651163/1‑32 TATTTAGCCTGGCCCTGATGCTGGCTGGGGGGggg > 1:1002430/1‑32 TATTTAGCCTGGCCCTGATGCTGGCTGGGGGGTTT > 1:1027871/1‑35 TATTTAGCCTGGCCCTGATGCTGGCTGGGGGGGTT > 1:1127276/1‑35 ATTTAGCCTGGCCCTGATGCTGGCTGGGGGGTTTT > 1:10409437/1‑35 ATTTAGCCTGGCCCTGATGCTGGCTGGGGGGTGTT > 1:5047186/1‑35 ATTTAGCCTGGCCCTGATGCTGGCTGGGGCGTTTg > 1:6262844/1‑34 TTTCGAGTTTCTTTATTTAGCCTGGCCCTGATGCTGGCTG‑‑‑‑‑‑‑‑‑ < REL606/2176099‑2176060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGGGGGTTTT > REL606/3882315‑3882323 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |