New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1087708 = | 57 (0.550) | 7 (0.090) | 3/36 | NT | 11.8% | coding (342/801 nt) | ycdJ | predicted hydrolase |
? | REL606 | = 1145443 | 62 (0.800) | intergenic (‑8/‑147) | flgA/flgB | flagellar basal body P‑ring biosynthesis protein A/flagellar basal‑body rod protein B |
Only 100 of 119 total aligned reads displayed.
GAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACG > REL606/1087674‑1087742 | gccacgctacgttttattatcagcattttcgcccc < 1:9569787‑M1/1‑1 (MQ=255) gccacgctacgttttattatcagcattttcgcccc < 1:19051556‑M1/1‑1 (MQ=255) gccacgctacgttttattatcagcattttcgcccc > 1:16371427‑M1/35‑35 (MQ=255) gccacgctacgttttattatcagcattttcgcccc > 1:437840‑M1/35‑35 (MQ=255) gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc > 1:1816911/1‑35 (MQ=255) gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc < 1:18781312/35‑1 (MQ=255) gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc > 1:20147253/1‑35 (MQ=255) gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc > 1:3593915/1‑35 (MQ=255) gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc < 1:12652920/35‑1 (MQ=255) gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc < 1:11698313/35‑1 (MQ=255) gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc > 1:16129888/1‑35 (MQ=255) gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc > 1:7198011/1‑35 (MQ=255) gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc < 1:9018477/35‑1 (MQ=255) aaaaCAGCGGCGCGTATGGGCGTTTATTCGTagcc > 1:14242376/1‑35 (MQ=255) aaaCAGCGGCGCGTATGGTCGTTTATTCGTagcca > 1:4104200/1‑35 (MQ=255) aaaCAGCGGCGCGTATGGGCGTTTATTCGTagccc > 1:1385158/1‑34 (MQ=255) aaaCAGCGGCGCGTATGGGCGTTTATTCGTagcca < 1:3747198/35‑1 (MQ=255) aaaCAGCGGCGCGTATGGGCGTTTATTCGTagcca > 1:6509867/1‑35 (MQ=255) aaCAGCGGCGCGTATGGGCGTTTATTCGTagccag > 1:11799440/1‑35 (MQ=255) aaCAGCGGCGCGTATGGGCGTTTATTCGTagccag > 1:6486363/1‑35 (MQ=255) aaCAGCGGCGCGTATGGGCGTTTATTCGTagccag < 1:18462166/35‑1 (MQ=255) aCAGCGGCGCGTATGGGCGTTTATTCGTagccagc > 1:9409041/1‑35 (MQ=255) cAGCGGCGCGTATGTGCGTTTATTCGTagccagcc > 1:5099570/1‑35 (MQ=255) cAGCGGCGCGTATGGGCGTTTATTCGTagccagcc > 1:15164573/1‑35 (MQ=255) cAGCGGCGCGTATGGGCGTTTATTCGTagccagcc < 1:8767104/35‑1 (MQ=255) cAGCGGCGCGTATGGGCGTTTATTCGTagccagcc > 1:11663520/1‑35 (MQ=255) cAGCGGCGCGTATGGGCGTTTATTCGTagccagcc > 1:4973992/1‑35 (MQ=255) cAGAGGCGCGTATGGGCGTTTATTCGTagccagcc < 1:8960606/35‑1 (MQ=255) aGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCg > 1:2499104/1‑35 (MQ=255) aGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCg > 1:4533158/1‑35 (MQ=255) ggcgCGTATGGGCGTTTATTCGTAGCCAGCCGTTa > 1:17914018/1‑35 (MQ=255) gcgcGTATGGGCGTTTATTCGTAGCCAGCCGTTaa > 1:14171418/1‑35 (MQ=255) cgcgTATTGGCGTTTATTCGTATCCAGCCGTTAAc > 1:5947907/1‑35 (MQ=25) cgcgTATGGGCGTTTATTCGTAGCCAGCCGTTAAc > 1:862581/1‑35 (MQ=255) cgcgTATGGGCGTTTATTCGTAGCCAGCCGTTAAc > 1:629424/1‑35 (MQ=255) cgcgTATGGGCGTTTATTCGTAGCCAGCCGTTAAc > 1:15969850/1‑35 (MQ=255) gcgTATGGGCGTTTATTCGTAGCCAGCCGTTAACg > 1:9672464/1‑35 (MQ=255) gcgTATGGGCGTTTATTCGTAGCCAGCCGTTAACg > 1:12362307/1‑35 (MQ=255) cgTATGGGCGTTTATTCGTAGCCAGCCGTTaaagg > 1:8358481/1‑32 (MQ=255) cgTATGGGCGTTTATTCGTAGCCAGCCGTTACCGc > 1:5954682/1‑35 (MQ=255) cgTATGGGCGTTTATTCGTAGCCAGCCGTTAACGc > 1:7896898/1‑35 (MQ=255) gTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCt > 1:11404145/1‑35 (MQ=255) gTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCt > 1:176965/1‑35 (MQ=255) gTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCt > 1:18019415/1‑35 (MQ=255) gTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCt > 1:5613454/1‑35 (MQ=255) gTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCt > 1:5229573/1‑35 (MQ=255) tATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTg > 1:17403471/1‑35 (MQ=255) tATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTg > 1:8921343/1‑35 (MQ=255) tATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTg > 1:12652926/1‑35 (MQ=255) tGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGAt > 1:779913/1‑35 (MQ=255) ggCGTTTATTCGTAGCCAGCCGTTAACGCTGATCa > 1:14975847/1‑35 (MQ=255) gCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAg > 1:8852903/1‑35 (MQ=255) gCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAg > 1:6500736/1‑35 (MQ=255) cttttTTTCTTACCCAGCCGTTAACGCTGATCAGc < 1:12048355/33‑1 (MQ=18) cGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGc > 1:4316848/1‑35 (MQ=255) cGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGc > 1:14274329/1‑35 (MQ=255) ttttTTTCGTACCCAGCCGTTAACGCTGATCAGca < 1:8240953/34‑1 (MQ=25) gTTTATTCGTAGCCAGCCGTTAACGCTGATCAGca > 1:5271287/1‑35 (MQ=255) gTTTATTCGTAGCCAGCCGTTAACGCTGATCAGca > 1:12766298/1‑35 (MQ=255) gTTTATTCGTAGCCAGCCGTTAACGCTGATCAGca > 1:13838090/1‑35 (MQ=255) gTTTATTCGTAGCCAGCCGTTAACGCTGATCAGca > 1:10994475/1‑35 (MQ=255) tttATTCGTAGCCAGCCGTTAACGCTGATCAGcac > 1:7767787/1‑35 (MQ=255) tttATTCGTAGCCAGCCGTTAACGCTGATCAGcac > 1:7660813/1‑35 (MQ=255) ttATTCGTAGCCAGCCGTTAACGCTGATCAGcaca > 1:1197367/1‑35 (MQ=255) tttccgcccCCAGCCGTTAACGCTGATCAGCACAg > 1:8882734‑M1/10‑35 (MQ=255) tATTCGTAGCCAGCCGTTAACGCTGATCAGCACAg > 1:14208473/1‑35 (MQ=255) tttcgcccCCAGCCGTTAACGCTGATCAGCACAGt > 1:9477507‑M1/9‑35 (MQ=255) tttcccccCCAGCCGTTAACGCTGATCAGCACAGt > 1:2198900‑M1/9‑35 (MQ=255) tttCATACCCAGCCGTTAACGCTGATCAGCACAGt < 1:15971667/34‑1 (MQ=25) aTTCGTAGCCAGCCGTTAACGCTGATCAGCACAGt > 1:11391979/1‑35 (MQ=255) ttcgtccCCAGCCGTTAACGCTGATCAGCACAGtt > 1:15487954‑M1/8‑35 (MQ=255) ttcgcccCCAGCCGTTAACGCTGATCAGCACAGtt > 1:978401‑M1/8‑35 (MQ=255) ttcgcccCCAGCCGTTAACGCTGATCAGCACAGtt > 1:1103353‑M1/8‑35 (MQ=255) ttcgaccCCAGCCGTTAACGCTGATCAGCACAGtt > 1:5736915‑M1/8‑35 (MQ=255) tCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTa > 1:5194165/1‑35 (MQ=255) tCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTa > 1:3537821/1‑35 (MQ=255) tCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTa > 1:8940940/1‑35 (MQ=255) cgcccCCAGCCGTTAACGCTGATCAGCACAGTTAc > 1:5449062‑M1/6‑35 (MQ=255) cGTAGCCAGCCGTTAACGCTGATCAGCACAGTTAc > 1:741774/1‑35 (MQ=255) cGTAGCCAGCCGTTAACGCTGATCAGCACAGTTAc > 1:11404843/1‑35 (MQ=255) cGTAGCCAGCAGTTAACGCTGATCAGCACAGTTAc < 1:17907585/35‑1 (MQ=255) gTAGCCAGCCGTTAACGCTGATCAGCACAGTTAcc > 1:7599755/1‑35 (MQ=255) ctcgccagccGTTAACGCTGATCAGCACAGTTAcc < 1:15119754/32‑1 (MQ=255) tAGCCAGCCGTTAACGCTGATCAGCACAGTTACCg > 1:17057207/1‑35 (MQ=255) tAGCCAGCCGTTAACGCTGATCAGCACAGTTACCg > 1:11037712/1‑35 (MQ=255) tAGCCAGCCGTTAACGCTGATCAGCACAGTTACCg > 1:19971860/1‑35 (MQ=255) accCCAGCCGTTAACGCTGATCAGCACAGTTACCg > 1:12949014‑M1/4‑35 (MQ=255) ccCCAGCCGTTAACGCTGATCAGCACAGTTACCGa > 1:16129658‑M1/3‑35 (MQ=255) ccCCAGCCGTTAACGCTGATCAGCACAGTTACCGa > 1:8461431‑M1/3‑35 (MQ=255) ccCCAGCCGTTAACGCTGATCAGCACAGTTACCGa > 1:18176561‑M1/3‑35 (MQ=255) agccagccGTTAACGCTGATCAGCACAGTTACCGa > 1:14692681/1‑35 (MQ=255) agccagccGTTAACGCTGATCAGCACAGTTACCGa > 1:7590029/1‑35 (MQ=255) agccagccGTTAACGCTGATCAGCACAGTTACCGa > 1:3208042/1‑35 (MQ=255) agccagccGTTAACGCTGATCAGCACAGTTACCGa > 1:3820633/1‑35 (MQ=255) agccagccGTTAACGCTGATCAGCACAGTTACCGa > 1:431726/1‑35 (MQ=255) CCAGCCGTTAACGCTGATCAGCACAGTTACCGact < 1:9859970‑M1/35‑2 (MQ=255) CCAGCCGTTAACGCTGATCAGCACAGTTACCGAcg < 1:7277536‑M1/35‑1 (MQ=255) CCAGCCGTTAACGCTGATCAGCACAGTTACCGAcg < 1:631870‑M1/35‑1 (MQ=255) CCAGCCGTTAACGCTGATCAGCACAGTTACCGAcg < 1:6221339‑M1/35‑1 (MQ=255) CCAGCCGTTAACGCTGATCAGCACAGTTACCGAcg < 1:4510291‑M1/35‑1 (MQ=255) | GAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACG > REL606/1087674‑1087742 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |