New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2966042 =52 (0.510)5 (0.060) 3/36 NT 9.1% coding (1345/1992 nt) tktA transketolase 1, thiamin‑binding
?REL606 3780481 = 61 (0.790)coding (513/1359 nt) ECB_03520 conserved hypothetical protein

Only 100 of 141 total aligned reads displayed.

TTCCAAAATCTGAACGTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTCTATCGGTGCAATGCTTG  >  REL606/3780447‑3780515
                                  |                                  
ttCCAAAATCTGAACGTCCTGTTGCTGctggctgg                                    <  1:10129611/35‑1 (MQ=255)
ttCCAAAATCTGAACGTCCTGTTGCTGctggctgg                                    <  1:6636380/35‑1 (MQ=255)
gtggaatacgcacgtaacgccgtacgtatggctgg                                    >  1:13892638‑M2/35‑35 (MQ=255)
gtggaatacgcacgtaacgccgtacgtatggctgg                                    >  1:7099526‑M2/35‑35 (MQ=255)
gtggaatacgcacgtaacgccgtacgtatggctgg                                    >  1:6757410‑M2/35‑35 (MQ=255)
acaatactgaagatttcgaaaactCTGctggctgg                                    <  1:12195037‑M1/11‑1 (MQ=255)
acaagactgaagatttcgaaaactCTGctggctgg                                    <  1:14388216‑M1/11‑1 (MQ=255)
acaagactgaagatttcgaaaactCTGctggctgg                                    <  1:4027112‑M1/11‑1 (MQ=255)
acaagactgaagatttcgaaaactCTGctggctgg                                    <  1:6886282‑M1/11‑1 (MQ=255)
acaagactgaagatttcgaaaactCTGctggctgg                                    <  1:8659950‑M1/11‑1 (MQ=255)
 tggaatacgcacgtaacgccgtacgtatggctggg                                   >  1:17471403‑M2/34‑35 (MQ=255)
 tCCAAAATCTGAACGTCCTGTTGCTGCTGGCTggg                                   >  1:4657975/1‑35 (MQ=255)
 tCCAAAATCTGAACGTCCTGTTGCTGCTGGCTggg                                   >  1:16927028/1‑35 (MQ=255)
 caagactgaagatttcgaaaactCTGCTGGCTggg                                   <  1:1064342‑M1/12‑1 (MQ=255)
 caagactgaagatttcgaaaactCTGCTGGCTggg                                   <  1:16103941‑M1/12‑1 (MQ=255)
  ggaatacgcacgtaacgccgtacgtatggctgggg                                  >  1:13202272‑M2/33‑34 (MQ=255)
  ggaatacgcacgtaacgccgtacgtatggctgGGc                                  >  1:2392042‑M2/33‑35 (MQ=255)
  ccAAAATCTGAACGTCCTGTTGCTGCTGGCTgggg                                  >  1:8516916/1‑34 (MQ=255)
  ccAAAATCTGAACGTCCTGTTGCTGCTGGCTgggg                                  >  1:7658458/1‑34 (MQ=255)
  ccAAAATCTGAACGTCCTGTTGCTGCTGGCTGGGc                                  <  1:4417159/35‑1 (MQ=255)
  ccAAAATCTGAACGTCCTGTTGCTGCTGGCTGGGc                                  <  1:4773150/35‑1 (MQ=255)
  aagactgaagatttcgaaaactCTGCTGGCtgggg                                  <  1:15984954‑M1/13‑2 (MQ=255)
  aagactgaagatttcgaaaactCTGCTGGCtgggg                                  <  1:18277884‑M1/13‑2 (MQ=255)
  aagactgaagatttcgaaaactCTGCTGGCtgggg                                  <  1:12403167‑M1/13‑2 (MQ=255)
  aagactgaagatttcgaaaactCTGCTGGCtggga                                  <  1:13042625‑M1/13‑2 (MQ=255)
   gaatacgcacgtaacgccgtacgtatggctggggg                                 >  1:7525857‑M2/32‑33 (MQ=255)
   cAAAATCTTAACGTCCTGTTGCTGCTGGCTGGGCg                                 >  1:4318104/1‑35 (MQ=255)
   agactgaagatttcgaaaactCTGCTGGctggggt                                 <  1:20261910‑M1/14‑3 (MQ=255)
    gactgaagatttcgaaaactCTGCTGgctggggtg                                <  1:7533890‑M1/15‑4 (MQ=255)
    gactgaagatttcgaaaactCTGCTGgctgggggg                                <  1:17187510‑M1/15‑4 (MQ=255)
    aatacgcacgtaacgccgtacgtatggctgggctg                                >  1:14382618‑M2/31‑33 (MQ=255)
    aaaaTCTGAACGTCCTGTTGGTGCTGGCTGGGCgg                                <  1:4994792/35‑1 (MQ=255)
    aaaaTCTGAACGTCCTGTTGCTGCTGGCTGGGCgg                                <  1:9025778/35‑1 (MQ=255)
     atacgcacgtaacgccgtacgtatggctgGGGggg                               >  1:15946502‑M2/30‑35 (MQ=255)
     actgaagatttcgaaaactCTGCTGGCTGGGGggg                               <  1:1232390‑M1/16‑1 (MQ=255)
     actgaagatttcgaaaactCTGCTGGCTGGGAggg                               <  1:2795779‑M1/16‑1 (MQ=255)
     aaaTCTGAACGTCCTGTTGCTGCTGGCTGGGGggg                               >  1:18414382/1‑35 (MQ=255)
     aaaTCTGAACGTCCTGTTGCTGCTGGCTGGGCgtg                               >  1:16396290/1‑33 (MQ=255)
     aaaTCTGAACGTCCTGTTGCTGCTGGCTGGGCggg                               <  1:17791496/35‑1 (MQ=255)
     aaaTCTGAACGTCCTGTTGCTGCTGGCTGGGCggg                               <  1:13509784/35‑1 (MQ=255)
      tacgcacgtaacgccgtacgtatggctgGGCGGgt                              >  1:5911866‑M2/29‑35 (MQ=255)
      ctgaagatttcgaaaactCTGCTGGCTGGGGGGgt                              <  1:13646117‑M1/17‑1 (MQ=255)
      ctgaagatttcgaaaactCTGCTGGCTGGGGGGgt                              <  1:7036776‑M1/17‑1 (MQ=255)
      aaTCTGAACGTCCTGTTGCTGCTGGCTGGGCGGgt                              <  1:11194403/35‑1 (MQ=255)
      aaTCTGAACGTCCTGTTGCTGCTGGCTGGGCGGgt                              <  1:9700918/35‑1 (MQ=255)
      aaTCTGAACGTCCTGTTGCTGCTGGCTGGGCGGgt                              <  1:18152108/35‑1 (MQ=255)
      aaTCTGAACGTCCTGTTGCTGATGGCTGGGCGGgt                              <  1:14562221/35‑1 (MQ=255)
       tgaagatttcgaaaactCTGCTGGCTGGGGGGgtg                             <  1:5795042‑M1/18‑1 (MQ=255)
       acgcacgtaacgccgtacgtatggctgGGCGGgtg                             >  1:375243‑M2/28‑35 (MQ=255)
       aTCTGAGCGTCCTGTTGCTGCTGGCTGGGCGGgtg                             <  1:829892/35‑1 (MQ=255)
        tCTGAACGTCCTGTTGCTGCTGGCTGGGCGGgtgt                            <  1:1531746/35‑1 (MQ=255)
        gaagatttcgaaaactCTGCTGGCTGGGGGGgtgt                            <  1:3101271‑M1/19‑1 (MQ=255)
         cTGAACGTCCTGTTGCTTCTGGCTGGGCGGGGGTc                           >  1:15220966/1‑35 (MQ=37)
          ttaaCGTCCTGTTGCTGCTGGCTGGGGGGGGGTCg                          >  1:4145517/3‑35 (MQ=25)
          tGAACGTCCTGTTGCTGCTGTCTGGGGGGGGGTCg                          >  1:20043974/1‑35 (MQ=25)
          tGAACGTCCTGTTGCTGATGGCTGGGCGGGTGTCg                          <  1:16587295/35‑1 (MQ=255)
           gAACGTCCTGTTGCTGCTGGCTGGGCGGGTGTCgg                         <  1:4875685/35‑1 (MQ=255)
            accGTGCTGTTGCTGCTGGCTGGGCGGGTGTCGGt                        <  1:16319207/33‑1 (MQ=37)
            aaCGTCCTTTTGCTGCTGGCTGGGCGGGGGTCggg                        >  1:359453/1‑34 (MQ=37)
            aaCGTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGt                        <  1:11956189/35‑1 (MQ=255)
            aaCCTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGt                        <  1:3160056/35‑1 (MQ=255)
             aCGTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGtt                       <  1:12609202/35‑1 (MQ=255)
              cGTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGttt                      <  1:11083596/35‑1 (MQ=255)
              cGTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGttt                      <  1:10481491/35‑1 (MQ=255)
              cGTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGttt                      <  1:5098648/35‑1 (MQ=255)
              cGTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGttt                      <  1:15275348/35‑1 (MQ=255)
               gTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGtttt                     <  1:9960136/35‑1 (MQ=255)
               gTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGtttt                     <  1:19034505/35‑1 (MQ=255)
               gTCCTGTTGCTGCTGGCTGGGCGGGGGGCGGtgtt                     >  1:2189729/1‑35 (MQ=25)
               gTCCTGTTGCTGATGGCTGGGCGGGTGTCGGtttt                     <  1:17404434/35‑1 (MQ=255)
                tCCTGTTGCTGCTGGCTGGGCGGGTGTCGGttttt                    <  1:12110906/35‑1 (MQ=255)
                tCCTGTTGCTGCTGGCTGGGCGGGTGTCGGttttt                    <  1:17337698/35‑1 (MQ=255)
                 ccTGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTc                   <  1:6139480/35‑1 (MQ=255)
                 ccTGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTc                   <  1:5410820/35‑1 (MQ=255)
                 ccTGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTc                   <  1:8041283/35‑1 (MQ=255)
                 ccTGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTc                   <  1:10055160/35‑1 (MQ=255)
                  cTGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTCt                  <  1:17797626/35‑1 (MQ=255)
                   tGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTCTa                 <  1:7720444/35‑1 (MQ=255)
                   tGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTCTa                 <  1:19603922/35‑1 (MQ=255)
                   tGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTCTa                 <  1:19609808/35‑1 (MQ=255)
                    gTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTCTAt                <  1:13125254/35‑1 (MQ=255)
                     ttGCTGCTGGCTGGGCGGGTGTCGGTTTTTCTATc               <  1:6892275/35‑1 (MQ=255)
                      tgctgcTGGCTGGGCGGGTGTCGGTTTTTCTATCg              <  1:2602193/35‑1 (MQ=255)
                      tgctgcTGGCTGGGCGGGTGTCGGTTTTTCTATCg              <  1:4348893/35‑1 (MQ=255)
                       gctgctGGCTGGGCGGGTGTCGGTTTTTCTATCgg             <  1:9492149/35‑1 (MQ=255)
                       gctgctGGCTGGGCGGGTGTCGGTTTTTCTATCgg             <  1:15549398/35‑1 (MQ=255)
                        CTGCTGGCTGGGCGGGTGTCGGTTTTTCTATCGGt            >  1:11435585‑M1/1‑35 (MQ=255)
                         tgctgGCTGGGCGGGGGTCGGGTTTTTTTTCgggg           >  1:14946683/1‑33 (MQ=16)
                         TGCTGGCTGGGCGGGTGTCGGTTTTTCTATCGGTg           >  1:13811252‑M1/1‑35 (MQ=255)
                         TGCTGGCTGGGCGGGTGTCGGTTTTTCTATCGGTg           >  1:4108502‑M1/1‑35 (MQ=255)
                             GGCTGGGCGGGTGTCGGTTTTTCTATCGGTGCAAt       >  1:3503572‑M1/1‑35 (MQ=255)
                             GGCTGGGCGGGTGTCGGTTTTTCTATCGGTGCAAt       >  1:17384636‑M1/1‑35 (MQ=255)
                              GCTGGGCGGGTGTCGGTTTTTCTATCGGTGCAATg      >  1:7314278‑M1/1‑35 (MQ=255)
                               CTGGGCGGGTGTCGGTTTTTCTATCGGTGCAATGc     >  1:19011788‑M1/1‑35 (MQ=255)
                               CTGGGCGGGTGTCGGTTTTTCTATCGGTGCAATGc     >  1:4704354‑M1/1‑35 (MQ=255)
                               CTGGGCGGGTGTCGGTTTTTCTATAGGTGCAATGc     >  1:2197316‑M1/1‑35 (MQ=255)
                                TGGGCGGGTGTCGGTTTTTCTATCGGTGCAATGCt    >  1:1012015‑M1/1‑35 (MQ=255)
                                TGGGCGGGTGTCGGTTTTTCTATCGGGGCAATGCt    <  1:12338103‑M1/35‑1 (MQ=255)
                                  ggCGGGTGTCGGTTTTTCTATCGGTGCAATGCTTg  <  1:19335448/35‑1 (MQ=255)
                                  ggCGGGTGTCGGTTTTTCTATCGGTGCAATGCTTg  <  1:641964/35‑1 (MQ=255)
                                  |                                  
TTCCAAAATCTGAACGTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTCTATCGGTGCAATGCTTG  >  REL606/3780447‑3780515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.