New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1306117 = | 70 (0.680) | 13 (0.140) | 4/44 | NT | 14.3% | coding (123/1461 nt) | cls | cardiolipin synthetase |
? | REL606 | 4085858 = | 92 (0.980) | intergenic (+56/‑93) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F |
AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1306152‑1306117 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGGGTTTTTTTTATC > REL606/4085858‑4085872 AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT < 1:5455524/35‑1 AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT < 1:11880989/35‑1 AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT < 1:9132240/35‑1 AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT > 1:19479554/1‑35 AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT < 1:16779186/35‑1 AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT > 1:19022839/1‑35 AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCT < 1:18847068/35‑1 AACGACGCGCAGTTCCCTCCGCGATGGCCTGGCTG > 1:5157731/1‑35 AACGACGCGCAGTTCCCTCCGCGATGGCCTGGCTG > 1:2289914/1‑35 AACGACGCGCAGTTCCCTCCGCGATGGCCTGGCTG < 1:15948393/35‑1 AACGACGCGCAGTTCCCTCCGCGATGGCCTGGCTG < 1:17816486/35‑1 CGACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGt > 1:11228668/1‑34 CGACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGG > 1:4683898/1‑35 CGACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGG > 1:4614712/1‑35 CGACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGG > 1:10384456/1‑35 GACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGG > 1:17602010/1‑35 GACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGG > 1:1483987/1‑35 GACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGG > 1:13406739/1‑35 GACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGG > 1:12083878/1‑35 ACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGGG > 1:6593275/1‑35 ACGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGGG > 1:1197586/1‑35 CGCGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGg > 1:8349529/1‑34 GCGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGgt > 1:4291942/1‑33 CGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGgtg > 1:7444298/1‑32 CGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGggt > 1:18458544/1‑32 CGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGTTg > 1:2733948/1‑34 CGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGGTT > 1:9057604/1‑35 CGCAGTTCCCTCCGCGATGGCCTGGCTGGGGGGTT > 1:14261561/1‑35 GCAGTTCCCTCCGCGATGGCCTGGCTGGGGGGTTT > 1:1968520/1‑35 CAGTTCCCTCCGCGATGGCCTGGCTGGGGGTTTTT > 1:6439238/1‑35 CAGTTCCCTCCGCGATGGCCTGGCTGGGGGTTATT > 1:2900954/1‑35 GTTCCCTCCGCGATGGCCTGGCTGGGGGTTTTTTT > 1:5283836/1‑35 GTTCCCTCCGCGATGGCCTGGCTGGGGGGTTTTTT > 1:12491167/1‑35 TCCCTCCGCGATGGCCTGGCTGGGGGGTTTTTTTA > 1:17184403/1‑35 CCCTCCGCGATGGCCTGGCTGGGGGTTTTTTTTAT > 1:18599699/1‑35 CCCTCCGCGATGGCCTGGCTGGGGGGTTTTTTTAT > 1:6429552/1‑35 CCTCCGCGATGGCCTGGCTGGGGGTTTTTTTTATt > 1:9515210/1‑34 CCTCCGCGATGGCCTGGCTGGGGGGTTTTTTTATt > 1:9171267/1‑34 AAACGACGCGCAGTTCCCTCCGCGATGGCCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1306152‑1306117 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGGGTTTTTTTTATC > REL606/4085858‑4085872 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |