New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1590579 = | 43 (0.420) | 11 (0.140) | 3/38 | NT | 20.2% | intergenic (+294/+147) | ydeE/ydeH | predicted transporter/hypothetical protein |
? | REL606 | = 3487475 | 53 (0.650) | coding (608/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
GGCGGTTTTTTTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1590595‑1590579 ‑‑‑‑‑‑‑‑‑‑‑‑tcgccACTTTTTCGATCTGCTCAATCATGCGGTTGAAGT < REL606/3487475‑3487442 gggGGTTTTTTTTCGCCACTTTTTCGATCTGCTCA < 1:5680333/32‑1 cgtGGTTTTTTTTCGCCACTTTTTCGATCTGCTCA < 1:11552360/32‑1 cGCGGTTTTTGTTCGCCACTTTTTCGATCTGCTCA < 1:5325702/34‑1 GCGGTGTTTTTTCGCCACTTTTTCGATCTGCTCAA < 1:8406154/35‑1 gGGTTTTTGTTCGCCACTTTTTCGATCTGCTCAAT < 1:2894254/34‑1 gggTTTTTTTCGCCACTTTTTCGATCTGCTCAATC < 1:11442122/32‑1 gtaTTTTTTCGCCACTTTTTCGATCTGCTCAATCA < 1:17610558/32‑1 GTTTTTTTTAGCCACTTTTTCGATCTGCTCAATCA < 1:16179311/35‑1 GTTTTTGTTCGCCACTTTTTCGATCTGCTCAATCA < 1:13906628/35‑1 TTTTTTTCGCCACTTTTTCGATCTGCTCAATCATG < 1:13633383/35‑1 TTTTTATCGCCACTTTTTCGATCTGCTCAATCATG < 1:18850492/35‑1 TTTTGTTCGCCACTTTTTCGATCTGCTCAATCATG < 1:15339911/35‑1 TTTTTTCGCCACTTTTTCGATCTGCTCAATCATGC < 1:5027353/35‑1 TTTTTTCGCCACTTTTTCGATCTGCTCAATCATGC < 1:8572953/35‑1 TTTGTTCGCCACTTTTTCGATCTGCTCAATCATGC < 1:14658524/35‑1 TTTGTTCGCCACTTTTTCGATCTGCTCAATCATGC < 1:10020831/35‑1 ttgTTCGCCACTTTTTCGATCTGCTCAATCATGCG < 1:7585344/32‑1 gTTCGCCACTTTTTCGATCTGCTCAATCATGCGGT < 1:12537832/34‑1 TTTCGCCACTTTTTCGATCTGCTCAATCATGCGGT < 1:16137520/35‑1 TTCGCCACTTTTTCGATCTGCTCAATCATGCGGTT < 1:18750840/35‑1 TTCGCCACTTTTTCGATCTGCTCAATCATGCGGTT < 1:17631285/35‑1 TTCGCCACTTTTTCGATCTGCTCAATCATGCGGTT < 1:11538492/35‑1 TTCGCCACTTTTTCGATCTGCTCAATAATGCGGTT < 1:13152973/35‑1 TCGCCACTTTTTCGATCTGCTCAATCATGCGGTTG < 1:9537884/35‑1 TCGCCACTTTTTCGATCTGCTCAATCATGCGGTTG < 1:10459502/35‑1 TCGCCACTTTTTCGATCTGCTCAATCATGCGGTTG > 1:13062326/1‑35 CGCCACTTTTTCGATCTGCTCAATCATGCGGTTGA > 1:4239889/1‑35 CGCCACTTTTTCGATCTGCTCAATCATGCGGTTGA > 1:6572698/1‑35 CGCCACTTTTTCGATCTGCTCAATCATGCGGTTGA > 1:19985045/1‑35 GCCACTTTTTCGATCTGCTCAATCATGCGGTTGAA > 1:12327083/1‑35 GCCACTTTTTCGATCTGCTCAATCATGCGGTTGAA > 1:10616647/1‑35 GCCACTTTTTCGATCTGCTCAATCATGCGGTTGAA < 1:10278498/35‑1 CCACTTTTTCGATCTGCTCAATCATGCGGTTGAAG < 1:19016883/35‑1 CACTTTTTCGATCTGCTCAATCATGCGGTTGAAGT < 1:20612514/35‑1 CACTTTTTCGATCTGCTCAATCATGCGGTTGAAGT < 1:20521425/35‑1 CACTTTTTCGATCTGCTCAATCATGCGGTTGAAGT > 1:6410432/1‑35 GGCGGTTTTTTTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1590595‑1590579 ‑‑‑‑‑‑‑‑‑‑‑‑tcgccACTTTTTCGATCTGCTCAATCATGCGGTTGAAGT < REL606/3487475‑3487442 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |