New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3411408 =52 (0.510)21 (0.310) 4/32 NT 37.7% coding (302/1023 nt) yheT predicted hydrolase
?REL606 3433812 = NA (NA)noncoding (418/768 nt) IS1 repeat region

Only 100 of 1001 total aligned reads displayed.

CACCGCTGCATCCGCGAAAATGCATCACCACGCCCAGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3411449‑3411408
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagcGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  >  REL606/3433812‑3433845
                                                                            
  CCGCTGCATCCGCGAAAATGCATCACCACGCCCAG                                         >  1:7255956/1‑35
   CGCTGCATCCGCGAAAATGCATCACCACGCCCAGC                                        >  1:6117544/1‑35
    cCTGCATCCGCGAAAATGCATCACCACGCCCAGCC                                       <  1:10752545/34‑1
      TGCATCCGCGAAAATGCATCACCACGCCCAGCCAG                                     >  1:5010575/1‑35
       GCATCCGCGAAAATGCATCACCACGCCCAGCCAGC                                    >  1:8977969/1‑35
                           CCACCCCCAGCCAGCGCTGGCGCGATTTAGCCCCG                <  1:12802081/35‑1
                             cccCCCAGCCAGCGCTGGCGCGATTTAGCCCCGAC              <  1:4833089/32‑1
                             cccCCCAGCCAGCGCTGGCGCGATTTAGCCCCGAC              <  1:18341208/32‑1
                             accCCCAGCCAGCGCTGGCGCGATTTAGCCCCGAC              <  1:12485944/32‑1
                              ccCCCAGCCAGCGCTGGCGCGATTTAGCCCCGACA             <  1:5468669/33‑1
                              ccCCCAGCCAGCGCTGGCGCGATTTAGCCCCGACA             <  1:8637643/33‑1
                              ccCCCAGCCAGCGCTGGCGCGATTTAGCCCCGACA             <  1:4387211/33‑1
                              ccCCCAGCCAGCGCTGGCGCGATTTAGCCCCGACA             <  1:19527763/33‑1
                              ccCCCAGCCAGCGCTGGCGCGATTTAGCCCCGACA             <  1:9139309/33‑1
                              ccCCCAGCCAGCGCTGGCGCGATTTAGCCCCGACA             <  1:14476632/33‑1
                               cCCCAGCCAGCGCTGGCGCGATTTAGCCCCGACAg            <  1:19917495/34‑2
                               cCCCAGCCAGCGCTGGCGCGATTTAGCCCCGACAT            <  1:5868060/34‑1
                               cCCCAGCCAGCGCTGGCGCGATTTAGCCCCGACAT            <  1:15132551/34‑1
                               cCCCAGCCAGCGCTGGCGCGATTTAGCCCCGACAT            <  1:5215652/34‑1
                               cCCCAGCCAGCGCTGGCGCGATTTAGCCCCGACAT            <  1:9751765/34‑1
                               cCCCAGCCAGCGATGGCGCGATTTAGCCCCGACAT            <  1:13195564/34‑1
                               aCCCAGCCAGCGCTGGCGCGATTTAGCCCCGACAT            <  1:9847370/34‑1
                                CCCAGCCAGCGCGGGCGCGATTTAGCCCCGACATA           <  1:10316838/35‑1
                                 CCAGCCAGCGCTGGCGCGATTTAGCCCCGACATAG          <  1:16895018/35‑1
                                 CCAGCCAGCGCTGGCGCGATTTAGCCCCGACATAG          <  1:15558102/35‑1
                                 CCAGCCAGCGCTGGCGCGATTTAGCCCCGACATAG          <  1:15299587/35‑1
                                 CCAGCCAGCGCTGGCGCGATTTAGCCCCGACATAG          <  1:8780986/35‑1
                                 CCAGCCAGCGCGGGCGCGATTTAGCCCCGACATAG          <  1:15876038/35‑1
                                  CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGa         >  1:4731470/1‑34
                                  CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGC         >  1:3013625/1‑35
                                  CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGC         >  1:20499653/1‑35
                                  CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGC         >  1:16286724/1‑35
                                  CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGC         >  1:11513153/1‑35
                                  CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGC         >  1:1174390/1‑35
                                   AGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCC        >  1:2149827/1‑35
                                   AGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCC        >  1:5952337/1‑35
                                   AGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCC        >  1:3919026/1‑35
                                   AGCCAGCGCTGGCGCGATTTAGCCCCGACATACCC        >  1:1502332/1‑35
                                    GCCAGCGCTGGCGCTATTTAGCCCCGACATAGCCC       >  1:1762670/1‑35
                                    GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCC       <  1:7858705/35‑1
                                    GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCC       <  1:3472648/35‑1
                                    GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCC       >  1:18881422/1‑35
                                    GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCC       <  1:6385045/35‑1
                                    GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCC       <  1:19301885/35‑1
                                    GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCC       >  1:4229051/1‑35
                                    GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCC       <  1:16461955/35‑1
                                     CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC      >  1:13802233/1‑35
                                     CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC      >  1:3226259/1‑35
                                     CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC      >  1:11115685/1‑35
                                     CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC      >  1:14805908/1‑35
                                     CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC      >  1:18623391/1‑35
                                     CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC      >  1:16792728/1‑35
                                     CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC      >  1:6499161/1‑35
                                     CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC      >  1:18064493/1‑35
                                      CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA     >  1:2821730/1‑35
                                      CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA     >  1:5653225/1‑35
                                      CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA     >  1:7454517/1‑35
                                      CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA     >  1:6675643/1‑35
                                      CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA     >  1:248323/1‑35
                                      CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA     >  1:2302099/1‑35
                                      CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA     >  1:12137606/1‑35
                                      CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA     >  1:20188382/1‑35
                                      CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA     >  1:19749790/1‑35
                                       AGCGCTGGCGCGATTTAGCCCCTACATAGCCCCAC    >  1:10190832/1‑35
                                       AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC    <  1:8000676/35‑1
                                       AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC    >  1:7710983/1‑35
                                       AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC    >  1:7562923/1‑35
                                       AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC    >  1:12285656/1‑35
                                       AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC    >  1:8277902/1‑35
                                       AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC    >  1:8459121/1‑35
                                       AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC    <  1:11327560/35‑1
                                       AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC    >  1:15455341/1‑35
                                       AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC    >  1:2663871/1‑35
                                       AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC    <  1:17423034/35‑1
                                       AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC    >  1:203492/1‑35
                                       AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC    <  1:19414712/35‑1
                                       AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC    >  1:19103130/1‑35
                                        GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT   >  1:3719327/1‑35
                                        GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT   <  1:4113415/35‑1
                                        GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT   <  1:14008999/35‑1
                                        GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT   <  1:10537228/35‑1
                                        GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT   >  1:17861984/1‑35
                                        GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT   >  1:17144146/1‑35
                                        GCGCGGGCGCGATTTAGCCCCGACATAGCCCCACT   <  1:4587031/35‑1
                                         CGCTGGCGCTATTTAGCCCCGACATAGCCCCACTG  >  1:6253769/1‑35
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  >  1:10992205/1‑35
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  >  1:10004200/1‑35
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  >  1:11906535/1‑35
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  >  1:95126/1‑35
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  <  1:8155034/35‑1
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  >  1:12626311/1‑35
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  >  1:7008104/1‑35
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  <  1:13010203/35‑1
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  >  1:13317404/1‑35
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  >  1:13680635/1‑35
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  <  1:14230572/35‑1
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  >  1:16062983/1‑35
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  >  1:16646345/1‑35
                                         CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  <  1:18207104/35‑1
                                         CGCGGGCGCGATTTAGCCCCGACATAGCCCCACTG  <  1:9265800/35‑1
                                                                            
CACCGCTGCATCCGCGAAAATGCATCACCACGCCCAGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3411449‑3411408
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagcGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG  >  REL606/3433812‑3433845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.