New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 278928365 (0.630)8 (0.080) 4/46 NT 11.2% coding (192/1278 nt) yqcE predicted transporter
?REL606 3161174 = 67 (0.650)coding (557/1071 nt) ygjJ hypothetical protein

TTCTTTATGCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2789270‑2789283
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCGACTCCTGCCGGACATCATGATGAAAGCAA  >  REL606/3161174‑3161207
              |                                  
TTCTTTATGCCCCCCCCGCGACTCCTGCCGGACAT                <  1:6737546/35‑1
 TCTTTATGCCCCCCCCGCGACTCCTGCCGGACATC               <  1:358603/35‑1
    TTATCCCCCCCCCGCGACTCCTGCCGGACATCATG            <  1:13670509/35‑1
    TTAAGCCCCCCCCGCGACTCCTGCCGGACATCATG            <  1:5515565/35‑1
      cacCCCCCCCCGCGACTCCTGCCGGACATCATGAT          <  1:20557883/32‑1
      ataCCCCCCCCGCGACTCCTGCCGGACATCATGAT          <  1:4630988/32‑1
      agGCCCCCCCCGCGACTCCTGCCGGACATCATGAT          <  1:11410107/33‑1
       tcgCCCCCCCGCGACTCCTGCCGGACATCATGATG         <  1:1979009/32‑1
       gaCCCCCCCCGCGACTCCTGCCGGACATCATGATG         <  1:615801/33‑1
       gGCCCCCCCCGCGACTCCTGCCGGACATCATGATG         <  1:5549364/34‑1
       aGCCCCCCCCGCGACTCCTGCCGGACATCATGATG         <  1:14343630/34‑1
       TGCCGCCCCCGCGACTCCTGCCGGACATCATGATG         <  1:17579034/35‑1
        cCCCCCCCCGCGACTCCTGCCGGACATCATGATGA        <  1:14643040/34‑1
         gCCCCCCCGCGACTCCTGCCGGACATCATGATGAA       <  1:11617578/34‑1
          CCCCCCCGCGACTCCTGCCGGACATCATGATGAAA      <  1:3216391/35‑1
          CCCCCCCGCGACTCCTGCCGGACATCATGATGAAA      <  1:13754472/35‑1
          CCCCCCCGCGACTACTGCCGGACATCATGATGAAA      <  1:6008348/35‑1
           gCCCCCGCGACTCCTGCCGGACATCATGATGAAAG     <  1:5680410/34‑1
            CCCCCGCGACTCCTGCCGGACATCATGATGAAAGC    <  1:3766337/35‑1
            CCCCCGCGACTCCTGCCGGACATCATGATGAAAGC    <  1:13229182/35‑1
             CCCCGCGACTCCTGCCGGACATCATGATGAAAGCA   <  1:17648253/35‑1
             CCCCGCGACTCCTGCCGGACATCATGATGAAAGCA   <  1:10811081/35‑1
              CCCGCGACTCCTGCCGGACATCATGATGAAAGCAA  <  1:16792504/35‑1
              CCCGCGACTCCTGCCGGACATCATGATGAAAGCAA  <  1:13135272/35‑1
              CCCGCGACTCCTGCCGGACATCATGATGAAAGCAA  <  1:769005/35‑1
              |                                  
TTCTTTATGCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2789270‑2789283
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCGACTCCTGCCGGACATCATGATGAAAGCAA  >  REL606/3161174‑3161207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.