New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 519489 =96 (0.930)12 (0.160) 3/36 NT 16.6% coding (644/1668 nt) fdrA membrane protein FdrA
?REL606 1815514 = 49 (0.640)coding (1030/1491 nt) ynjC fused transporter subunits of ABC superfamily: membrane components

Only 100 of 109 total aligned reads displayed.

GCTATGGTTGCCCATTTTATTACCTGCTCTGCCACTGGTGGCGGGCCAGTACACGCTGGCGCTATGGCT  >  REL606/1815480‑1815548
                                  |                                  
gCTATGGTTGCCCATTTTATTACCTGCTCTGCCAc                                    >  1:5023911/1‑35 (MQ=255)
gCTATGGTTGCCCATTTTATTACCTGCTCTGCCAc                                    >  1:4523537/1‑35 (MQ=255)
gCTATGGTTGCCCATTTTATTACCTGCTCTGCCAc                                    >  1:2086456/1‑35 (MQ=255)
gCTATGGTTGCCCATTTTATTACCTGCTCTGCCAc                                    >  1:19493646/1‑35 (MQ=255)
gCTATGGTTGCCCATTTTATTACCTGCTCTGCCAc                                    >  1:1472524/1‑35 (MQ=255)
 cTATGGTTGCCCATTTTATTACCTGCTCTGCCACt                                   >  1:20418251/1‑35 (MQ=255)
 cTATGGTTGCCCATTTTATTACCTGCTCTGCCACt                                   >  1:15806300/1‑35 (MQ=255)
 cTATGGTTGCCCATTTCATTACCTGCTCTGCCACt                                   >  1:1003815/1‑35 (MQ=255)
  tATGGTTGCCCATTTTATTACCTGCTCTGCCACtg                                  >  1:17881399/1‑35 (MQ=255)
  tATGGTTGCCCATTTTATTACCTGCTCTGCCACtg                                  >  1:9736922/1‑35 (MQ=255)
  tATGGTTGCCCATTTTATTACCTGCTCTGCCACtg                                  >  1:12927826/1‑35 (MQ=255)
   aTGGTTGCCCATTTTATTACCTGCTCTGCCACtgg                                 >  1:2826225/1‑35 (MQ=255)
   aTGGTTGCCCATTTTATTACCTGCTCTGCCACtgg                                 >  1:7738342/1‑35 (MQ=255)
   aTGGTTGCCCATTTTATTACCTGCTCTGCCACtgg                                 >  1:19891046/1‑35 (MQ=255)
    tGGTTGCCCATTTTATTACCTGCTCTGCCACtggt                                >  1:2951163/1‑35 (MQ=255)
    tGGTTGCCCATTTTATTACCTGCTCTGCCAAtggt                                >  1:694251/1‑35 (MQ=255)
     ggTTGCCCATTTTATTACCTGCTCTGCCACttgtg                               >  1:5301981/1‑35 (MQ=255)
     ggTTGCCCATTTTATTACCTGCTCTGCCACtggtg                               >  1:11233261/1‑35 (MQ=255)
     ggTTGCCCATTTTATTACCTGCTCTGCCACtggtg                               >  1:13651805/1‑35 (MQ=255)
     ggTTGCCCATTTTATTACCTGCTCTGCCACtggtg                               >  1:9409992/1‑35 (MQ=255)
     ggTTGCCCATTTTATTACCTGCTCTGCCACtggtg                               >  1:9881650/1‑35 (MQ=255)
     ggTTCCCCTTTTTATTCCCTCCCCTGCCACtggtg                               <  1:19814779/35‑1 (MQ=9)
      gTTTCCCATTTTATTACCTGCTCTGCCACtggtgg                              >  1:2755282/1‑35 (MQ=255)
      gTTGCCCATTTTATTCCCTGCTCTGCCACtggtgg                              <  1:1074027/35‑1 (MQ=255)
      gTTGCCCATTTTATTACCTGATCTGCCACtggggg                              >  1:177252/1‑35 (MQ=37)
       ttGCCCATTTTATTCCCTGCTCTGCCACTGGTGGc                             <  1:7615105/35‑1 (MQ=255)
        tGCCCATTTTATTACCTGCTCTGCCACTGGTGGCg                            >  1:16978527/1‑35 (MQ=255)
        tGCCCATTTTATTACCTGCTCTGCCACTGGTGGCg                            >  1:3112272/1‑35 (MQ=255)
         gCCCATTTTATTACCTGCTCTGCCACtggtgggcg                           >  1:54839/1‑32 (MQ=255)
         gCCCATTTTATTACCTGCTCTGCCACTGGTGGCgg                           >  1:8553572/1‑35 (MQ=255)
         gCCCATTTTATTACCTGCTCTGCCACTGGTGGCgg                           >  1:13754437/1‑35 (MQ=255)
         gCCCATTTTATTACCTGCTCTGCCACTGGTGGCgg                           >  1:12619178/1‑35 (MQ=255)
         gCCCATTTTATTACCTGCTCTGCCACTGGTGGCgg                           >  1:18178256/1‑35 (MQ=255)
          cccATTTTATTACCTGCTCTGCCACTGGTGGCggg                          >  1:14587138/1‑35 (MQ=255)
          cccATTTTATTACCTGCTCTGCCACTGGTGGCggg                          >  1:2728858/1‑35 (MQ=255)
          cccATTTTATTACCTGCTCTGCCACTGGTGGCggg                          >  1:4445757/1‑35 (MQ=255)
           ccATTTTATTACCTGCTCTGCCACTGGTGGCgggg                         >  1:4785878/1‑34 (MQ=255)
           ccATTTTATTACCTGCTCTGCCACTGGTGGCGGGc                         >  1:13364858/1‑35 (MQ=255)
           ccATTTTATTACCTGCTCTGCCACTGGTGGCGGGc                         >  1:7069281/1‑35 (MQ=255)
            cATTTTATTACCTGCTCTGCCACTGGTGGGggggc                        >  1:18933282/1‑33 (MQ=38)
            cATTTTATTACCTGCTCTGCCACTGGTGGGggggc                        >  1:18176599/1‑33 (MQ=38)
            cATTTTATTACCTGCTCTGCCACTGGTGGCggggc                        >  1:5406149/1‑33 (MQ=255)
            cATTTTATTACCTGCTCTGCCACTGGTGGCGGGcc                        >  1:10563889/1‑35 (MQ=255)
             aTTTTATTACCTGCTCTGCCACTGTTGGCGGGCCa                       >  1:15075465/1‑35 (MQ=255)
             aTTTTATTACCTGCTCTGCCACTGGTGGGGGGGCa                       >  1:18835379/1‑35 (MQ=37)
             aTTTTATTACCTGCTCTGCCACTGGTGGCGGGccc                       >  1:8933986/1‑34 (MQ=255)
              ttttATTCCCTGCTCTGCCACTGGTGGCGGGCCAg                      <  1:19451615/35‑1 (MQ=255)
              ttttATTACCTGCTCTGCCACTGGTGGCGGGcgcg                      >  1:6692699/1‑32 (MQ=255)
              ttttATTACCTGCTCTGCCACTGGTGGCGGGGCac                      >  1:5547500/1‑34 (MQ=255)
               tttATTACCTGCTCTGCCACTGGTGGCGGGcccgg                     >  1:4024605/1‑32 (MQ=255)
                ttattcCCCGCCCTGCCACTGGTGGCGGGCCAGTa                    <  1:4392549/35‑1 (MQ=25)
                ttattaCCTGCTCTGCCACTGGTGGCGGGGCAgga                    >  1:18446046/1‑33 (MQ=38)
                ttattaCCTGCTCTGCCACTGGTGGCGGGCCAGTa                    >  1:14250015/1‑35 (MQ=255)
                 tattaCCTGCTCTGCCACTGGTGGCGGGGCCGTac                   >  1:12072257/1‑35 (MQ=37)
                  ttcccctcccctgccaCTGGTGGCGGGCCAGTaca                  <  1:19209625‑M2/19‑1 (MQ=255)
                   ttccctgccctgccaCTGGTGGCGGGCCAGTacac                 <  1:8889608‑M2/20‑1 (MQ=255)
                   ttccctcccctgccaCTGGTGGCGGGCCAGTacac                 <  1:6138717‑M2/20‑1 (MQ=255)
                   ttaCCTGCTCTGCCACTGGTGGCGGGGCAGTacac                 >  1:9374055/1‑35 (MQ=255)
                   ttaCCTGCTCTGCCACTGGTGGCGGGCCAGTaaac                 >  1:13663209/1‑35 (MQ=255)
                   ttaCCTGCTCTGACACTGGTGGCGGGCCAGTacac                 <  1:12394480/35‑1 (MQ=255)
                    tccctcccctgccaCTGGTGGCGGGCCAGTACACg                <  1:1683536‑M2/21‑1 (MQ=255)
                    tcccgcccctgccaCTGGTGGCGGGCCAGTACACg                <  1:14122665‑M2/21‑1 (MQ=255)
                    taCCTGCTCTGCCACTGGTGGCGGGGCAGTACACg                >  1:13277015/1‑35 (MQ=255)
                     ccctgccctgccaCTGGTGGCGGGCCAGTACACGc               <  1:5324515‑M2/22‑1 (MQ=255)
                     ccctcccctgccaCTGGTGGCGGGCCAGTACACGc               <  1:4864983‑M2/22‑1 (MQ=255)
                     ccctcccctgccaCTGGTGGCGGGCCAGTACACGc               <  1:17949951‑M2/22‑1 (MQ=255)
                     cccgcccctgccaCTGGTGGCGGGCCAGTACACGc               <  1:13665456‑M2/22‑1 (MQ=255)
                     cccgcccctgccaCTGGTGGCGGGCCAGTACACGc               <  1:11872984‑M2/22‑1 (MQ=255)
                     cccccccctgccaCTGGTGGCGGGCCAGTACACGc               <  1:933670‑M2/22‑1 (MQ=255)
                     aCCTGCTCTGCCACTGGTGGCGGGCCAGGACACGc               >  1:4230439/1‑35 (MQ=255)
                      cccgCTCTGCCACTGGTGGCGGGCCAGTACACGCt              <  1:12010780/32‑1 (MQ=255)
                      ccTGCTCTGCCACTGGTGGCGGGGCAGGACACGCt              >  1:5254508/1‑35 (MQ=37)
                      ccTGCTCTGCCACTGGTGGCGGGCCCGTACACGCt              >  1:9013930/1‑35 (MQ=255)
                       ctgccctgccaCTGGTGGCGGGCCAGTACACGCTg             <  1:11848086‑M2/24‑1 (MQ=255)
                       ctcccctgccaCTGGTGGCGGGCCAGTACACGCTg             <  1:9262874‑M2/24‑1 (MQ=255)
                       cgcccctgccaCTGGTGGCGGGCCAGTACACGCTg             <  1:1027255‑M2/24‑1 (MQ=255)
                       cgcccctgccaCTGGTGGCGGGCCAGTACACGCTg             <  1:5344929‑M2/24‑1 (MQ=255)
                        tGCTCTGCCACTGGTGGCGGGCCAGTACACGCTgg            >  1:13537620/1‑35 (MQ=255)
                         cccctgccaCTGGTGGCGGGCCAGTACACGCTGgc           <  1:14986054‑M2/26‑1 (MQ=255)
                          ccctgccaCTGGTGGCGGGCCAGTACACGCTGgcg          <  1:11866047‑M2/27‑1 (MQ=255)
                          ccctgccaCTGGTGGCGGGCCAGTACACGCTGgcg          <  1:10500668‑M2/27‑1 (MQ=255)
                            ctgccaCTGGTGGCGGGGCAGTACACGCTGGCGCt        >  1:16334997‑M2/7‑35 (MQ=255)
                            ctgccaCTGGTGGCGGGCCAGTACACGCTGGCGCt        <  1:7553831‑M2/29‑1 (MQ=255)
                            ctgccaCTGGTGGCGGGCAAGTACACGCTGGCGCt        <  1:2629762‑M2/29‑1 (MQ=255)
                             tgccaCTGGTGGCGGGCCAGTACACGCTGGGGCTa       >  1:13374867‑M2/6‑35 (MQ=255)
                             tgccaCTGGTGGCGGGCCAGTACACGCTGGCGCTa       <  1:9815536‑M2/30‑1 (MQ=255)
                             tgccaCTGGTGGCGGGCCAGTACACGCTGGCGCTa       <  1:5264440‑M2/30‑1 (MQ=255)
                              gccaCTGGTGGCGGGCCAGTACACGCTGGCGCTAt      <  1:8034135‑M2/31‑1 (MQ=255)
                               ccaCTGGTGGCGGGCCAGTACACGCTGGCGCTATg     <  1:14336194‑M2/32‑1 (MQ=255)
                               ccaCTGGTGGCGGGCCAGTACACGCTGGCGCTATg     <  1:19351313‑M2/32‑1 (MQ=255)
                               caaCTGGTGGCGGGCCAGTACACGCTGGCGCTATg     <  1:15413413‑M2/32‑1 (MQ=255)
                                caCTGGTGGCGGGCCAGTACACGCTGGCGCTATgg    <  1:7488593‑M2/33‑1 (MQ=255)
                                caCTGGTGGCGGGCCAGTACACGCTGGCGCTATgg    <  1:5366340‑M2/33‑1 (MQ=255)
                                caCTGGTGGCGGGCCAGTACACGCTGGCGCTATgg    <  1:6209626‑M2/33‑1 (MQ=255)
                                caCTGGTGGCGGACCAGTACACGCTGGCGCTATgg    <  1:538586‑M2/33‑1 (MQ=255)
                                cACTGGTGGCGTGCCAGTACACGCTGGGGCTATgg    >  1:12735002/1‑35 (MQ=37)
                                 aCTGGTGGCGGGCCAGTACACGCTGGCGCTATGGc   <  1:7658618‑M2/34‑1 (MQ=255)
                                 aCTGGTGGCGGGCCAGTACACGCTGGCGCTATGGc   <  1:5089823‑M2/34‑1 (MQ=255)
                                  cTGGTGGCGGGCCAGTACACGCTGGGGGTATGGCt  >  1:18117300/1‑35 (MQ=37)
                                  cTGGTGGCGGGCCAGTACACGCTGGCGCTATgggt  >  1:2355413/1‑33 (MQ=255)
                                  |                                  
GCTATGGTTGCCCATTTTATTACCTGCTCTGCCACTGGTGGCGGGCCAGTACACGCTGGCGCTATGGCT  >  REL606/1815480‑1815548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.