New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2169426 =52 (0.510)13 (0.160) 6/38 NT 13.2% coding (329/1158 nt) yehY predicted transporter subunit: membrane component of ABC superfamily
?REL606 = 2730083 130 (1.600)coding (2203/2253 nt) hypF carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases

Only 100 of 141 total aligned reads displayed.

CAGCAATGCCAGCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATT  >  REL606/2169392‑2169460
                                  |                                  
cccccgctaaccaacgcgccgcagcaataaccccc                                    >  1:970966‑M1/35‑35 (MQ=255)
cccccgctaaccaacgcgccgcagcaataaccccc                                    >  1:10030078‑M1/35‑35 (MQ=255)
cacccgctaaccaacgcgccgcagcaataaccccc                                    <  1:436702‑M1/1‑1 (MQ=255)
cacccgctaaccaacgcgccgcagcaataaccccc                                    >  1:1178477‑M1/35‑35 (MQ=255)
cAGCAATGCCAGCGCCGCAGCCAGCCAGAAACCAc                                    >  1:10047440/1‑35 (MQ=255)
 acccgctaaccaacgcgccgcagcaataaccccCt                                   <  1:7994208‑M1/2‑1 (MQ=255)
 acccgctaaccaacgcgccgcagcaataaccccCt                                   >  1:1751562‑M1/34‑35 (MQ=255)
 acccgctaaccaacgcgccgcagcaataaccccCt                                   <  1:20580416‑M1/2‑1 (MQ=255)
 acccgctaaccaacgcgccgcagcaataaccccCt                                   >  1:19484764‑M1/34‑35 (MQ=255)
 acccgctaaccaacgcgccgcagcaataaacccCt                                   >  1:1637456‑M1/34‑35 (MQ=255)
 acaaaTCCCGGCGCCGCAGCCAGCCAGAAACCACt                                   <  1:4777330/32‑1 (MQ=21)
 aGCAATGCCATCGCCGCAGCCAGCCAGAAACCACt                                   >  1:20107818/1‑35 (MQ=255)
 aGCAATGCCAGCGCCGCAGCCAGCCAGAAACCACt                                   >  1:11573060/1‑35 (MQ=255)
 aGCAATGCCAGCGCCGCAGCCAGCCAGAAACCACt                                   >  1:2160186/1‑35 (MQ=255)
  gCAATGCCAGCGCCGCAGCCAGCCAGAAACCACTg                                  >  1:13448773/1‑35 (MQ=255)
  cccgctaaccaacgcgccgcagcaataaccccCTg                                  >  1:13875931‑M1/33‑35 (MQ=255)
  cccgctaaccaacgcgccgcagcaataaccccCTg                                  >  1:12286047‑M1/33‑35 (MQ=255)
  cccgctaaccaacgcgccgcagcaataaccccCTg                                  >  1:4658110‑M1/33‑35 (MQ=255)
  cccgctaaccaacgcgccgaagcaataaccccCTg                                  >  1:19162950‑M1/33‑35 (MQ=255)
   ncgctaaccaacgcgccgcagcaataaccccCTGc                                 <  1:3614775‑M1/4‑1 (MQ=255)
   ccgctacccaacgcgccgcagcaataaccccCTGc                                 >  1:1958201‑M1/32‑35 (MQ=255)
   ccgctaaccaacgcgccgcagcaataacccccagc                                 <  1:20357440‑M1/4‑4 (MQ=255)
   ccgctaaccaacgcgccgcagcaataaccccCTGc                                 <  1:5018383‑M1/4‑1 (MQ=255)
   ccgctaaccaacgcgccgcagcaataaccccCTGc                                 <  1:6185667‑M1/4‑1 (MQ=255)
   ccgctaaccaacgcgccgcagcaataaccccCTGc                                 <  1:4242470‑M1/4‑1 (MQ=255)
   ccgctaaccaacgcgccgcagcaataaccccCTGc                                 <  1:17638924‑M1/4‑1 (MQ=255)
   ccgctaaccaacgcgccgcagcaataaccccCTGc                                 >  1:11547188‑M1/32‑35 (MQ=255)
   ccgctaaccaacgcgccgcagcaataaccccCTGc                                 >  1:12753027‑M1/32‑35 (MQ=255)
   cAATGCCGGCGCCGCAGCCAGCCAGAAACCACTGc                                 <  1:19771476/35‑1 (MQ=255)
   cAATGCCAGCGCCGCAGCCAGCCAGAAACCACTGc                                 >  1:16184742/1‑35 (MQ=255)
   cAATCCCAGCCCCGCAGCCAGCCAGAAACCACTGc                                 <  1:3492421/35‑1 (MQ=25)
    cgctaaccaacgcgccgcagcaataaccccCTGcc                                <  1:15615628‑M1/5‑1 (MQ=255)
    cgctaaccaacgcgccgcagcaataaccccCTGcc                                <  1:1603213‑M1/5‑1 (MQ=255)
    cgctaaccaacgcgccgcagcaataaccccCTGcc                                <  1:20274533‑M1/5‑1 (MQ=255)
    cgctaaccaacgcgccgcagcaataaccccCTGcc                                <  1:10681289‑M1/5‑1 (MQ=255)
    cgctaaccaacgcgccgcagcaataaccccCTGcc                                <  1:7759532‑M1/5‑1 (MQ=255)
    cgctaaccaacgcgccgcagcaataaccccCTGcc                                <  1:2955831‑M1/5‑1 (MQ=255)
    aaTGCCAGCGCCGCAGCCAGCCAGAAACCACTGcc                                >  1:15588648/1‑35 (MQ=255)
    aaTGCCAGCGCCGCAGCCAGCCAGAAACCACTGcc                                >  1:6722362/1‑35 (MQ=255)
    aaTGCCAGCGCCGCAGCCAGCCAGAAACCACTGcc                                >  1:9237308/1‑35 (MQ=255)
    aaTGCCAGCGCCGCAGCCAGCCAGAAACCACTGcc                                >  1:5729581/1‑35 (MQ=255)
     aTGCCAGCGCCGCAGCCAGCCAGAAACCACTGCCg                               >  1:13585547/1‑35 (MQ=255)
      tGCCAGCGCCGCAGCCAGCCAGAAACCACTGCCGa                              >  1:11600025/1‑35 (MQ=255)
        ccAGCGCCGCAGCCAGCCCGAAACCACTGCCGAgg                            >  1:7887918/1‑35 (MQ=255)
         cAGCGCCGCAGCCAGCCAGAAACCACTGCCGAGGc                           >  1:5063363/1‑35 (MQ=255)
         cAGCGCCGCAGCCAGCCAGAAACCACTGCCGAGGc                           >  1:505318/1‑35 (MQ=255)
          aGCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCt                          >  1:641707/1‑35 (MQ=255)
          aGCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCt                          >  1:16116464/1‑35 (MQ=255)
            cgccgcAGCCAGCCAGAAACCACTGCCGAGGCTgg                        >  1:9681068/1‑35 (MQ=255)
             gccgcAGCCAGCCAGAAACCACTGCCGAGGCTGGt                       >  1:918086/1‑35 (MQ=255)
             gccgcAGCCAGCCAGAAACCACTGCCGAGGCTGGt                       >  1:2860614/1‑35 (MQ=255)
              ccgcAGCCAGCCAGAAACCACTCCCGAGGCTGGTa                      >  1:8504721/1‑35 (MQ=255)
                gcAGCCAGCCAGAAACCACTGCCGAGGCTGGTAcg                    >  1:18739713/1‑35 (MQ=255)
                 cagccagcCAGAAACCACTGCCGAGGCTGGTAcgc                   >  1:18084526/1‑35 (MQ=255)
                 cagccagcCAGAAACCACTGCCGAGGCTGGGAcgc                   >  1:10847172/1‑35 (MQ=255)
                  cgccacccaGAACCCCCTGCCGAGGCTGGTAcgcg                  <  1:7484059/34‑1 (MQ=25)
                  agccagccAGAAACCACTGCCGAGGCTGGTAcgcg                  >  1:14619408/1‑35 (MQ=255)
                  agccagccAGAAACCACTGCCGAGGCTGGTAcgcg                  >  1:18924270/1‑35 (MQ=255)
                   gccagccaGAAACCACTGCCGAGGCTGGTACgcgc                 >  1:11908954/1‑35 (MQ=255)
                   cccacccagAACCCCCTGCCGAGGCTGGTACgcgc                 <  1:7442685/34‑1 (MQ=25)
                   cccacccaaAACCCCCTGCCGAGGCTGGTACgcgc                 <  1:12262246/34‑1 (MQ=19)
                     cagccagAAACCACTGCCGAGGCTGGTACGCGCCa               >  1:7126302/1‑35 (MQ=255)
                     cagccagAAACCACTGCCGAGGCTGGTACGCGCCa               >  1:17678558/1‑35 (MQ=255)
                     cagccaaAACCCCCTGCCGAGGCTGGTACGCGCCa               <  1:7875395/35‑1 (MQ=25)
                     cagcaagaaccccCTGCCGAGGCTGGTACGCGCCa               >  1:15013945‑M1/14‑35 (MQ=255)
                      gaccaaAACCCCCTGCCGAGGCTGGTACGCGCCAg              <  1:18353102/33‑1 (MQ=25)
                      ccccaaAAACCCCTGCCGAGGCTGGTACGCGCCAg              <  1:18066306/33‑1 (MQ=25)
                      agccagAAACCACTGCCGAGGCTGGTACGCGcccg              >  1:13229542/1‑33 (MQ=255)
                      agccaaAACCCCCTGCCGAGGCTGGTACGCGCCAg              <  1:6980997/35‑1 (MQ=25)
                      agcaaaaaccccCTGCCGAGGCTGGTACGCGCCAg              >  1:774022‑M1/13‑35 (MQ=255)
                       gccagAAACCACTGCCGAGGCTGGTACGCGCCAgc             >  1:4704269/1‑35 (MQ=255)
                       gcaaaaaccccCTGCCGAGGCTGGTACGCGCCAgc             >  1:9621149‑M1/12‑35 (MQ=255)
                       cccaaAACCCCCTGCCGAGGCTGGTACGCGCCTgc             <  1:9525140/34‑1 (MQ=19)
                        ccaaAACCCCCTGCCGAGGCTGGTACGCGCCAgcg            <  1:5947203/35‑1 (MQ=25)
                        caaaaaccccCTGCCGAGGCTGGTACGCGCCAgcg            >  1:4718825‑M1/11‑35 (MQ=255)
                         cagAAACCACTGCCGAGGCTGGTACGCGCCAgcgc           >  1:478433/1‑35 (MQ=255)
                         cagAAACCACTGCCGAGGCTGGTACCCGCCAgcgc           >  1:3731800/1‑35 (MQ=255)
                         cagAAACCACTGCCGAGGCTGGGACGCGCCAgcgc           >  1:16291906/1‑35 (MQ=255)
                         cagAAACCACTGCCGAGGCTGGGACGCGCCAgcgc           >  1:1429828/1‑35 (MQ=255)
                         aaaaaccccCTGCCGAGGCTGGTACGCGCCAgcgc           >  1:10311820‑M1/10‑35 (MQ=255)
                          aaaaccccCTGCCGAGGCTGGTACGCGCCAGCGCa          >  1:12289531‑M1/9‑35 (MQ=255)
                           gAACCCACTGCCGAGGCTGGTACGCGCCAGCGCAc         <  1:19013429/35‑1 (MQ=255)
                           gAAACCACTGCCGAGGCTGGTACGCGCCAGCGCAc         >  1:14046209/1‑35 (MQ=255)
                           aacccccCTGCCGAGGCTGGTACGCGCCAGCGCAc         >  1:7681731‑M1/8‑35 (MQ=255)
                           aaaccccCTGCCGAGGCTGGTACGCGCCAGCGCAc         >  1:13510748‑M1/8‑35 (MQ=255)
                           aaaccccCTGCCGAGGCTGGTACGCGCCAGCGCAc         >  1:3115019‑M1/8‑35 (MQ=255)
                           aaaccccCTGCCGAGGCTGGTACGCGCCAGCGCAc         >  1:13530348‑M1/8‑35 (MQ=255)
                            aaccccCTGCCGAGGCTGGTACGCGCCAGCGCACt        >  1:17745148‑M1/7‑35 (MQ=255)
                             cccccCTGCCGAGGCTGGTACGCGCCAGCGCACTg       >  1:8567580‑M1/6‑35 (MQ=255)
                             accccCTGCCGAGGCTGGTACGCGCCAGCGCACTg       >  1:370236‑M1/6‑35 (MQ=255)
                             aaCCCCTGCCGAGGCTGGTACGCGCCAGCGAACTg       <  1:12472948/35‑1 (MQ=37)
                             aaCCACTGCCGAGGCTGGGACGCGCCAGCGCACTg       >  1:9286977/1‑35 (MQ=255)
                             aaCCACTGCCGAGGCTGGGACGCGCCAGCGCACTg       >  1:16907070/1‑35 (MQ=255)
                               ccACTGCCGAGGCTGGTACGCGCCAGCGCACTGcc     >  1:12879964/1‑35 (MQ=255)
                               ccACTGCCGAGGCTGGTACGCGCCAGCGCACTGcc     >  1:2820600/1‑35 (MQ=255)
                               ccACTGCCGAGCCTGGTACGCGCCAGCGCACTGcc     >  1:8971594/1‑35 (MQ=255)
                               ccACTGCCGAGCCTGGTACGCGCCAGCGCACTGcc     >  1:14686416/1‑35 (MQ=255)
                                cACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCa    >  1:390997/1‑35 (MQ=255)
                                cACTGCCGAGGCTGGGACGCGCCAGCGCACTGCCa    >  1:8454504/1‑35 (MQ=255)
                                  CTGCCGAGGCTGGTACGCGCCAGCGCACTGCCAtt  <  1:12966831‑M1/35‑1 (MQ=255)
                                  |                                  
CAGCAATGCCAGCGCCGCAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATT  >  REL606/2169392‑2169460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.