New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 588495 =NA (NA)5 (0.050) 4/44 NT NA noncoding (1/1977 nt) IS150 repeat region
?REL606 589936 = NA (NA)noncoding (387/768 nt) IS1 repeat region

Only 100 of 186 total aligned reads displayed.

AGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACGATGAAA  >  REL606/588461‑588525
                                  |                              
aGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGtt                                <  1:6726453/35‑1 (MQ=255)
aGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGtt                                >  1:7487943/1‑35 (MQ=255)
aGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGtt                                >  1:3339356/1‑35 (MQ=255)
aGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGtt                                <  1:15978984/35‑1 (MQ=255)
 gTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTg                               <  1:16438815/35‑1 (MQ=255)
 gTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTg                               >  1:16187980/1‑35 (MQ=255)
 gTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTg                               >  1:16939387/1‑35 (MQ=255)
  tCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGt                              <  1:3512545/35‑1 (MQ=255)
  tCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGt                              >  1:11348242/1‑35 (MQ=255)
  tCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGt                              >  1:13729440/1‑35 (MQ=255)
   cATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTa                             >  1:14496640/1‑35 (MQ=255)
   cATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTa                             >  1:17161137/1‑35 (MQ=255)
    aTGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTAc                            <  1:7526158/35‑1 (MQ=255)
    aTGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTAc                            >  1:11141445/1‑35 (MQ=255)
     tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                           <  1:5390028/35‑1 (MQ=255)
     tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                           >  1:1214153/1‑35 (MQ=255)
     tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                           >  1:1563948/1‑35 (MQ=255)
     tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                           >  1:19271876/1‑35 (MQ=255)
     tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                           >  1:7838448/1‑35 (MQ=255)
     tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                           <  1:9176164/35‑1 (MQ=255)
     tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                           <  1:6584833/35‑1 (MQ=255)
      gCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTg                          <  1:19314600/35‑1 (MQ=255)
      gCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTg                          <  1:7795528/35‑1 (MQ=255)
      gCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTg                          <  1:3260895/35‑1 (MQ=255)
      gCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTg                          >  1:6231402/1‑35 (MQ=255)
      gCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTg                          <  1:16882384/35‑1 (MQ=255)
       cAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGc                         >  1:18703963/1‑35 (MQ=255)
       cAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGc                         >  1:1329721/1‑35 (MQ=255)
       cAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGc                         <  1:12108615/35‑1 (MQ=255)
       cAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGc                         >  1:11043877/1‑35 (MQ=255)
       cAGAAAAAAAAGGGTTCAGCTTCAAGTTGTACTGc                         >  1:5854042/1‑35 (MQ=255)
        aGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCa                        >  1:19640646/1‑35 (MQ=255)
        aGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCa                        >  1:3465904/1‑35 (MQ=255)
         gAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAc                       >  1:16346335/1‑35 (MQ=255)
         gAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAc                       >  1:409655/1‑35 (MQ=255)
          aaaaaaaCTGGTTCAGCTTCAAGTTGTACTGCAcc                      >  1:20316234/1‑35 (MQ=255)
          aaaaaaaCGGGTTCAGCTTCAAGTTGTACTGCAcc                      >  1:18832932/1‑35 (MQ=255)
          aaaaaaaCGGGTTCAGCTTCAAGTTGTACTGCAcc                      <  1:520770/35‑1 (MQ=255)
          aaaaaaaCGGGTTCAGCTTCAAGTTGTACTGCAcc                      >  1:10037486/1‑35 (MQ=255)
          aaaaaaaCGGGTTCAGCTTCAAGTTGTACTGCAcc                      <  1:9399147/35‑1 (MQ=255)
          aaaaaaaCGGGTTCAGCTTCAAGTGTACTGCAccc                     <  1:17745003/35‑1 (MQ=38)
           aaaaaaCGGGTTCAGCTTCAAGTTGTACTGCAccc                     <  1:4457563/35‑1 (MQ=255)
           aaaaaaCGGGTTCAGCTTCAAGTTGTACTGCAccc                     <  1:17998430/35‑1 (MQ=255)
            aaaaaCGGGTTCAGCTTCAAGTTGTACTGCACCCa                    <  1:10311225/35‑1 (MQ=255)
             aaaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAt                   <  1:3614531/35‑1 (MQ=255)
             aaaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAt                   >  1:2690068/1‑35 (MQ=255)
             aaaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAt                   <  1:11475675/35‑1 (MQ=255)
              aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtt                  <  1:12312738/35‑1 (MQ=255)
              aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtt                  >  1:2537754/1‑35 (MQ=255)
              aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtt                  <  1:9489222/35‑1 (MQ=255)
              aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtt                  >  1:18336504/1‑35 (MQ=255)
              aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtt                  <  1:15640216/35‑1 (MQ=255)
              aaaCGGGTTCACCTTCAAGTTGTACTGCACCCAtt                  <  1:2545053/35‑1 (MQ=255)
              aaaCGGGTTAAGCTTCAAGTTGTACTGCACCCAtt                  <  1:13931438/35‑1 (MQ=255)
               aaCGGGTTCAGCTTCAAGTTGTACTGCACCCAttt                 <  1:3105402/35‑1 (MQ=255)
               aaCGGGTTCAGCTTCAAGTTGTACTGCACCCAttt                 >  1:9663914/1‑35 (MQ=255)
               aaCGGGTTCAGCTTCAAGTTGTACTGCACCCAttt                 >  1:10482439/1‑35 (MQ=255)
               aaCGGGTTCAGCTTCAAGTTGTACTGCACCCAttt                 <  1:1249879/35‑1 (MQ=255)
               aaCGGGTTCAGCTTCAAGTTGTACTGCACACAttt                 <  1:13002723/35‑1 (MQ=255)
                aCGGGTTCAGCTTCAAGTTTTACTGCACCCAtttt                >  1:9196613/1‑35 (MQ=255)
                aCGGGTTCAGCTTCAAGTTGTACTGCACCCAtttt                >  1:5570696/1‑35 (MQ=255)
                aCGGGTTCAGCTTCAAGTTGTACTGCACCCAtttt                <  1:1901921/35‑1 (MQ=255)
                aCGGGTTCAGCTTCAAGTTGTACTGCACCCAtttt                >  1:13646866/1‑35 (MQ=255)
                aCGGGTTCAGCTTCAAGTTGTACTGCACCCAtttt                <  1:3997021/35‑1 (MQ=255)
                 cGGGTTCAGCTTCAAGTTGTACTGCACCCATTttg               <  1:13357574/35‑1 (MQ=255)
                 cGGGTTCAGCTTCAAGTTGTACTGCACCCATTttg               <  1:17352429/35‑1 (MQ=255)
                 cGGGTTCAGCTTCAAGTTGTACTGCACCCATTttg               <  1:832786/35‑1 (MQ=255)
                  gggTTCAGCTTCAAGTTGTACTGCACCCATTttgt              <  1:6111545/35‑1 (MQ=255)
                  gggTTCAGCTTCAAGTTGTACTGCACCCATTttgt              >  1:8658805/1‑35 (MQ=255)
                    gTTCAGCTTCAAGTTGTACTGCACCCATTttgttg            <  1:9898504/35‑1 (MQ=255)
                    gTTCAGCTTCAAGTTGTACTGCACCCATTttgttg            <  1:20373104/35‑1 (MQ=255)
                    gTTCAGCTTCAAGTTGTACTGCACCCATTttgttg            >  1:16643765/1‑35 (MQ=255)
                    gTTCAGCTTCAAGTTGTACTGCACCCATTttgttg            >  1:15938261/1‑35 (MQ=255)
                     ttCAGCTTCAAGTTGTACTGCACCCATTTTGTTgg           >  1:5552092/1‑35 (MQ=255)
                     ttCAGCTTCAAGTTGTACTGCACCCATTTTGTTgg           >  1:7051319/1‑35 (MQ=255)
                      tCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGa          <  1:7715025/35‑1 (MQ=255)
                       cAGCTTCAAGTTGTACTGCACCCATTTTGTTGGAc         >  1:2318917/1‑35 (MQ=255)
                       cAGCTTCAAGTTGTACTGCACCCATTTTGTTGGAc         >  1:18440992/1‑35 (MQ=255)
                       cAGCTTCAAGTTGTACTGCACCCATTTTGTTGGAc         <  1:14186576/35‑1 (MQ=255)
                        aGCTTCAAGTTGTACTGCACCCATTTTGTTGGAct        >  1:11724127/1‑34 (MQ=255)
                        aGCTTCAAGTTGTACTGCACCCATTTTGTTGGACg        <  1:14069873/35‑1 (MQ=255)
                        aGCTTCAAGTTGTACTGCACCAATTTTGTTGGACg        <  1:8525836/35‑1 (MQ=255)
                         gCTTCAAGTTGTACTGCACCCATTTTGTTGGACGa       >  1:15413617/1‑35 (MQ=255)
                         gCTTCAAGTTGTACTGCACCCATTTTGTTGGACGa       <  1:19864750/35‑1 (MQ=255)
                         gCTTCAAGTTGTACTGCACCCATTTTGTTGGACGa       <  1:16410306/35‑1 (MQ=255)
                         gCTTCAAGTTGTACTGCACCCATTTTGTTGGACGa       >  1:18231471/1‑35 (MQ=255)
                          cTTCAAGTTGTACTGCACCCATTTTGTTGGACGAt      <  1:13509808/35‑1 (MQ=255)
                          cTTCAAGTTGTACTGCACCCATTTTGTTGGACGAt      >  1:7923550/1‑35 (MQ=255)
                          cTTCAAGTTGTACTGCACCCATTTTGTTGGACGAt      <  1:7690399/35‑1 (MQ=255)
                           ttCAAGTTGTACTGCACCCATTTTGTTGGACGATg     <  1:12724526/35‑1 (MQ=255)
                            tCAAGTTGTACTGCACCCATTTTGTTGGACGATGa    <  1:8220200/35‑1 (MQ=255)
                            tCAAGTTGTACTGCACCCATTTTGTTGGACGATGa    <  1:17682459/35‑1 (MQ=255)
                            tCAAGTTGTACTGCACCCATTTTGTTGGACGATGa    <  1:907369/35‑1 (MQ=255)
                            tCAAGTTGTACTGCACCCATTTTGTTGGACGATGa    <  1:6897402/35‑1 (MQ=255)
                             cAAGTTGTACTGCACCCATTTTGTTTGACGATGaa   >  1:8751540/1‑35 (MQ=255)
                             cAAGTTGTACTGCACCCATTTTGTTGGACGATGaa   <  1:14693074/35‑1 (MQ=40)
                             cAAGTTGTACTGCACCCATTTTGTTGGACGATGaa   >  1:13971137/1‑35 (MQ=40)
                             cAAGTTGTACTGCACCCATTTTGTTGGACGATGaa   >  1:13011335/1‑35 (MQ=40)
                             cAAGTTGTACTGCACCCATTTTGTTGGACGATGaa   >  1:10026061/1‑35 (MQ=40)
                              aaGTTGTACTGCACCCATTTTGTTGGACGATGaaa  >  1:6872559/1‑35 (MQ=38)
                                  |                              
AGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACGATGAAA  >  REL606/588461‑588525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.