New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 519489 = | 96 (0.930) | 12 (0.160) | 3/36 | NT | 16.6% | coding (644/1668 nt) | fdrA | membrane protein FdrA |
? | REL606 | 1815514 = | 49 (0.640) | coding (1030/1491 nt) | ynjC | fused transporter subunits of ABC superfamily: membrane components |
CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/519528‑519489 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccaCTGGTGGCGGGCCAGTACACGCTGGCGCTATGGC > REL606/1815514‑1815547 CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC > 1:3196271/1‑35 CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC > 1:2846589/1‑35 CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC < 1:2452752/35‑1 CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC < 1:11895528/35‑1 CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC > 1:8428596/1‑35 CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC < 1:1530683/35‑1 CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC < 1:13981818/35‑1 CGCCAAGGCCAATCGCGTGTGTAATTCCCTCCCCT < 1:14487489/35‑1 CGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCT < 1:540323/35‑1 CGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCT < 1:6129063/35‑1 CGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCT > 1:2019941/1‑35 CGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCT > 1:8691046/1‑35 CGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCT > 1:9475908/1‑35 GCCAAGGCCGATCGCGTGAGTAATTCCCTCCCCTG < 1:3747388/35‑1 GCCAAGGCCAATCGCGTGAGTAATTCCNTCCCCTG < 1:842706/35‑1 GCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTG < 1:5270347/35‑1 GCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTG > 1:7793265/1‑35 GCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTG < 1:16226299/35‑1 GCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTG < 1:12379275/35‑1 GCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTG < 1:1334486/35‑1 CCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGC > 1:1379718/1‑35 CCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGC > 1:9435148/1‑35 CCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGC < 1:16815011/35‑1 CCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGC < 1:5248181/35‑1 CCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGC > 1:18879820/1‑35 CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCg > 1:176039/1‑34 CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC < 1:8522389/35‑1 CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC > 1:14855287/1‑35 CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC > 1:4872295/1‑35 CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC > 1:3679277/1‑35 CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC < 1:3339919/35‑1 CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC > 1:19480635/1‑35 CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC < 1:10638047/35‑1 CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC < 1:3158000/35‑1 AAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCCA > 1:6418095/1‑35 AAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCCA > 1:6870233/1‑35 AAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCCA > 1:14865770/1‑35 AAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCCA > 1:15297968/1‑35 ttcCCCTCCCCTGCCACTGGTGGCGGGCCAGTACA < 1:19209625/32‑1 TTCCCTGCCCTGCCACTGGTGGCGGGCCAGTACAC < 1:8889608/35‑1 TTCCCTCCCCTGCCACTGGTGGCGGGCCAGTACAC < 1:6138717/35‑1 TCCCTCCCCTGCCACTGGTGGCGGGCCAGTACACG < 1:1683536/35‑1 TCCCGCCCCTGCCACTGGTGGCGGGCCAGTACACG < 1:14122665/35‑1 CCCTGCCCTGCCACTGGTGGCGGGCCAGTACACGC < 1:5324515/35‑1 CCCTCCCCTGCCACTGGTGGCGGGCCAGTACACGC < 1:4864983/35‑1 CCCTCCCCTGCCACTGGTGGCGGGCCAGTACACGC < 1:17949951/35‑1 CCCGCCCCTGCCACTGGTGGCGGGCCAGTACACGC < 1:11872984/35‑1 CCCGCCCCTGCCACTGGTGGCGGGCCAGTACACGC < 1:19340800/35‑1 CCCGCCCCTGCCACTGGTGGCGGGCCAGTACACGC < 1:13665456/35‑1 CCCCCCCCTGCCACTGGTGGCGGGCCAGTACACGC < 1:933670/35‑1 ctgCCCTGCCACTGGTGGCGGGCCAGTACACGCTG < 1:11848086/32‑1 cgCCCCTGCCACTGGTGGCGGGCCAGTACACGCTG < 1:1027255/33‑1 cgCCCCTGCCACTGGTGGCGGGCCAGTACACGCTG < 1:5344929/33‑1 CTCCCCTGCCACTGGTGGCGGGCCAGTACACGCTG < 1:9262874/35‑1 CCCCTGCCACTGGTGGCGGGCCAGTACACGCTGGC < 1:14986054/35‑1 CCCTGCCACTGGTGGCGGGCCAGTACACGCTGGCG < 1:10500668/35‑1 CCCTGCCACTGGTGGCGGGCCAGTACACGCTGGCG < 1:11866047/35‑1 CTGCCACTGGTGGCGGGGCAGTACACGCTGGCGCT > 1:16334997/1‑35 CTGCCACTGGTGGCGGGCCAGTACACGCTGGCGCT < 1:7553831/35‑1 CTGCCACTGGTGGCGGGCAAGTACACGCTGGCGCT < 1:2629762/35‑1 tctCACTGGTGGCGGGCCAGTACACGCTGGCGCTA < 1:8522403/32‑1 TGCCACTGGTGGCGGGCCAGTACACGCTGGGGCTA > 1:13374867/1‑35 TGCCACTGGTGGCGGGCCAGTACACGCTGGCGCTA < 1:9815536/35‑1 TGCCACTGGTGGCGGGCCAGTACACGCTGGCGCTA < 1:5264440/35‑1 GCCACTGGTGGCGGGCCAGTACACGCTGGCGCTAT < 1:8034135/35‑1 caACTGGTGGCGGGCCAGTACACGCTGGCGCTATG < 1:15413413/33‑1 CCACTGGTGGCGGGCCAGTACACGCTGGCGCTATG < 1:19351313/35‑1 CCACTGGTGGCGGGCCAGTACACGCTGGCGCTATG < 1:14336194/35‑1 CACTGGTGGCGGGCCAGTACACGCTGGCGCTATGG < 1:7488593/35‑1 CACTGGTGGCGGGCCAGTACACGCTGGCGCTATGG < 1:6209626/35‑1 CACTGGTGGCGGGCCAGTACACGCTGGCGCTATGG < 1:5366340/35‑1 CACTGGTGGCGGACCAGTACACGCTGGCGCTATGG < 1:538586/35‑1 ACTGGTGGCGGGCCAGTACACGCTGGCGCTATGGC < 1:7658618/35‑1 ACTGGTGGCGGGCCAGTACACGCTGGCGCTATGGC < 1:5089823/35‑1 CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/519528‑519489 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccaCTGGTGGCGGGCCAGTACACGCTGGCGCTATGGC > REL606/1815514‑1815547 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |