New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1306329 =80 (0.780)14 (0.190) 4/34 NT 22.1% intergenic (‑90/+281) cls/kch cardiolipin synthetase/voltage‑gated potassium channel
?REL606 = 3839377 42 (0.580)coding (1104/2415 nt) gyrB DNA gyrase subunit B

TACCCCCGCCCCCGACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1306346‑1306329
‑‑‑‑‑‑‑‑‑‑‑ccgacgcGAAAATCGTGGTTGGCAAAATTATCGATGCTGCC  <  REL606/3839377‑3839344
                                                    
cACCCCCCCCCCCGACGCGAAAATCGTGGTTGGCA                   <  1:3049611/34‑1
 cCCCCCCCCCCCGACGCGAAAATCGTGGTTGGCAA                  <  1:3252108/34‑1
 ACCCCCCCCCCCGACGCGAAAATCGTGGTTGGCAA                  <  1:6814266/35‑1
  aCCCCCCCCCCGACGCGAAAATCGTGGTTGGCAAA                 <  1:19099097/34‑1
  CCCCCCCCCCCGACGCGAAAATCGTGGTTGGCAAA                 <  1:7278522/35‑1
  CCCCCCCCCCCGACGCGAAAATCGTGGTTGGCAAA                 <  1:2107096/35‑1
  CCCCCCCCCCCGACGCGAAAATCGTGGTTGGCAAA                 <  1:4094026/35‑1
   aCCCCCCCCCGACGCGAAAATCGTGGTTGGCAAAA                <  1:2148225/34‑1
   CCCCCCCCCCGACGCGAAAATCGTGGTTGGCAAAA                <  1:11338889/35‑1
   CCCCCCCCCCGACGCGAAAATCGTGGTTGGCAAAA                <  1:14713936/35‑1
   CCCCCCCCCCGACGCGAAAATCGTGGTTGGCAAAA                <  1:6363326/35‑1
   CCCCCCCCCCGACGCGAAAATCGTGGTTGGCAAAA                <  1:19819937/35‑1
    CCCCCCCCCGACGCGAAAATCGTGGTTGGCAAAAT               <  1:10434952/35‑1
    CCCCCCCCCGACGCGAAAATCGTGGTTGGCAAAAT               <  1:4952202/35‑1
     cccCCCCCGACGCGAAAATCGTGGTTGGCAAAATT              <  1:18781573/32‑1
     cccCCCCCGACGCGAAAATCGTGGTTGGCAAAATT              <  1:16394992/32‑1
      ccCCCCCGACGCGAAAATCGTGGTTGGCAAAATTA             <  1:6346790/33‑1
      ccCCCCCGACGCGAAAATCGTGGTTGGCAAAATTA             <  1:10995621/33‑1
      ccCCCCCGACGCGAAAATCGTGGTTGGCAAAATTA             <  1:11634549/33‑1
      ccCCCCCGACGCGAAAATCGTGGTTGGCAAAATTA             <  1:16692973/33‑1
       cCCCCCGACGCGAAAATCGTGGTTGGCAAAATTAT            <  1:8568513/34‑1
       cCCCCCGACGCGAAAATCGTGGTTGGCAAAATTAT            <  1:260117/34‑1
       cCCCCCGACGCGAAAATCGTGGTTGGCAAAATTAT            <  1:16377498/34‑1
       cCCCCCGACGCGAAAATCGTGGTTGGCAAAATTAT            <  1:18671535/34‑1
       cCCCCCGACGCGAAAATCGTGGTTGGCAAAATTAT            <  1:6401436/34‑1
        CCCCCGACGCGAAAATCGTGGTTGGCAAAATTATC           <  1:18967234/35‑1
        CCCCCGACGCGAAAATCGTGGTTGGCAAAATTATC           <  1:9983700/35‑1
        CCCCCGACGCGAAAATCGTGGTTGGCAAAATTATC           <  1:11945611/35‑1
        CCCCCGACGCGAAAATCGTGGTTGGCAAAATTATC           <  1:9460870/35‑1
         CCCCGACGCGAAAATCGTGGTTGGCAAAATTATCG          <  1:5132009/35‑1
         CCCCGACGCGAAAATCGTGGTTGGCAAAATTATCG          <  1:12332230/35‑1
          ccaGACGCGAAAATCGTGGTTGGCAAAATTATCGA         <  1:11600657/32‑1
          CCCGACGCGAAAATCGTGGTTGGCAAAATTATCGA         <  1:14462357/35‑1
          CCCGACGCGAAAATCGTGGTTGGCAAAATTATCGA         <  1:2810071/35‑1
          CCCGACGCGAAAATCGTGGTTGGCAAAATTATCGA         <  1:13267415/35‑1
           CCGACGCGAAAATCGTGGTTGGCAAAATTATCGAT        >  1:18240348/1‑35
           CCGACGCGAAAATCGTGGTTGGCAAAATTATCGAT        <  1:9699923/35‑1
           CCGACGCGAAAATCGTGGTTGGCAAAATTATCGAT        >  1:18732603/1‑35
           CCGACGCGAAAATCGTGGTTGGCAAAATTATCGAT        <  1:14952106/35‑1
           CCGACGCGAAAATCGTGGTTGGCAAAATTATCGAT        >  1:2647862/1‑35
            CGACGCGAAAATCGTGGTTGGCAAAATTATCGATG       <  1:10670310/35‑1
            CGACGCGAAAATCGTGGTTGGCAAAATTATCGATG       <  1:3944600/35‑1
            CGACGCGAAAATCGTGGTTGGCAAAATTATCGATG       >  1:4111994/1‑35
            CGACGCGAAAATCGTGGTTGGCAAAATTATCGATG       <  1:16530087/35‑1
            CGACGCGAAAATCGTGGTTGGCAAAATTATCGATG       >  1:16605384/1‑35
             GACGCGAAAATCGTGGTTGGCCAAATTATCGATGC      >  1:5200717/1‑35
             GACGCGAAAATCGTGGTTGGCAAAATTATCGATGg      >  1:17234328/1‑34
             GACGCGAAAATCGTGGTTGGCAAAATTATCGATGC      >  1:19591810/1‑35
             GACGCGAAAATCGTGGTTGGCAAAATTATCGATGC      >  1:7037561/1‑35
              ACGCGAAAATCGTGGTTGGCAAAATTATCGATGCT     <  1:9100762/35‑1
              ACGCGAAAATCGTGGTTGGCAAAATTATCGATGCT     <  1:2551552/35‑1
              ACGCGAAAATCGTGGTTGGCAAAATTATCGATGCT     <  1:2134764/35‑1
              ACGCGAAAATCGTGGTTGGCAAAATTATCGATGCT     <  1:13367382/35‑1
              ACGCGAAAATCGTGGTTGGCAAAATTATCGATGCT     <  1:16462238/35‑1
              ACGCGAAAATCGTGGTTCGCAAAATTATCGATGCT     >  1:19927966/1‑35
              ACGCGAAAATAGTGGTTGGCAAAATTATCGATGCT     <  1:1044839/35‑1
               CGCGAAAATCGTGGTTGGCAAAATTATCGATGCTG    >  1:10159023/1‑35
               CGCGAAAATCGTGGTTGGCAAAATTATCGATGCTG    >  1:9343872/1‑35
               CGCGAAAATCGTGGTTGGCAAAATTATCGATGCTG    <  1:6519010/35‑1
               CGCGAAAATCGTGGTTGGCAAAATTATCCATGCTG    >  1:6330722/1‑35
                GCGAAAATCGTGGTTGGCAAAATTATCGATGGTGC   >  1:19572273/1‑35
                GCGAAAATCGTGGTTGGCAAAATTATCGATGCTGC   <  1:11478283/35‑1
                GCGAAAATCGTGGTTGGCAAAATTATCGATGCTGC   >  1:9115333/1‑35
                GCGAAAATCGTGGTTGGCAAAATTATCGATGCTGC   >  1:11943049/1‑35
                GCGAAAATCGTGGTTGGCAAAATTATCGATGCTGC   <  1:12470546/35‑1
                GCGAAAATCGTGGTTGGCAAAATTATCGATGCTGC   <  1:6143029/35‑1
                GCGAAAATCGTGGTTGGCAAAATTATCGATGCTGC   <  1:5616079/35‑1
                GCGAAAATCGTGGTTGGCAAAATTATCGATGCTGC   >  1:20046787/1‑35
                GCGAAAATCGTGGTTGGCAAAATTATCGATGCTGC   <  1:20056396/35‑1
                GCGAAAATCGTGGTTGGCAAAATTATCGATGCTGC   <  1:3213306/35‑1
                 CGAAAATCGTGGTTGGCAAAATTATCGATGCTGCa  >  1:16261348/1‑34
                 CGAAAATCGTGGTTGGCAAAATTATCGATGCTGCC  <  1:13500888/35‑1
                 CGAAAATCGTGGTTGGCAAAATTATCGATGCTGCC  >  1:127104/1‑35
                 CGAAAATCGTGGTTGGCAAAATTATCGATGCTGCC  >  1:7943895/1‑35
                 CGAAAATCGTGGTTGGCAAAATTATCGATGCTGCC  >  1:662487/1‑35
                 CGAAAATCGTGGTTGGCAAAATTATCGATGCTGCC  <  1:16852067/35‑1
                                                    
TACCCCCGCCCCCGACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1306346‑1306329
‑‑‑‑‑‑‑‑‑‑‑ccgacgcGAAAATCGTGGTTGGCAAAATTATCGATGCTGCC  <  REL606/3839377‑3839344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.