New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 298140148 (0.470)13 (0.170) 5/36 NT 15.6% coding (553/705 nt) yggS predicted enzyme
?REL606 3882315 = 105 (1.360)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

Only 100 of 121 total aligned reads displayed.

TGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGTAGCATTTGCCGGACTGAAAACGCGCTACCCGCA  >  REL606/2981367‑2981435
                                  |                                  
tGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTG                                    <  1:10906589‑M1/35‑1 (MQ=255)
tGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTG                                    >  1:12275016‑M1/1‑35 (MQ=255)
tGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTG                                    <  1:12199610‑M1/35‑1 (MQ=255)
 gTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGt                                   <  1:5074947/35‑1 (MQ=255)
 gTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGt                                   <  1:16758668/35‑1 (MQ=255)
 gTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGg                                   >  1:18351706‑M1/1‑34 (MQ=255)
 gTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGg                                   >  1:8228982‑M1/1‑34 (MQ=255)
  tAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGTa                                  <  1:15506234/35‑1 (MQ=255)
  tAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGTa                                  <  1:5903336/35‑1 (MQ=255)
  tAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGTa                                  <  1:6654609/35‑1 (MQ=255)
  tAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGTa                                  <  1:14367893/35‑1 (MQ=255)
   tcagCAGTTTGAAGTTGCACGCCAAATGGCTGTAg                                 <  1:6126157/32‑1 (MQ=255)
   aaGGCAGTTTGAAGTTGCACGCCAAATGGCTGggg                                 >  1:15692720‑M1/1‑32 (MQ=255)
   aaGGCAGTTTGAAGTTGCACGCCAAATGGCTGggg                                 >  1:7053938‑M1/1‑32 (MQ=255)
   aaGGCAGTTTGAAGTTGCACGCCAAATGGCTGggg                                 >  1:3045813‑M1/1‑32 (MQ=255)
   aaGGCAGTTTGAAGTTGCACGCCAAATGGCTGTAg                                 <  1:18914806/35‑1 (MQ=255)
   aaGGCAGTTTGAAGTTGCACGCCAAATGGCTGTAg                                 <  1:10251763/35‑1 (MQ=255)
    aGGCAGTTTGAAGTTGCACGCCAAATGGCTGgggg                                >  1:17873156‑M1/1‑31 (MQ=255)
    aGGCAGTTTGAAGTTGCACGCCAAATGGCTGgggg                                >  1:1597008‑M1/1‑31 (MQ=255)
     tctaGTTTGAAGTTGCACGCCAAATGGCTGTAGCa                               <  1:7086018/32‑1 (MQ=255)
     tctaGTTTGAAGTTGCACGCCAAATGGCTGTAGCa                               <  1:14739974/32‑1 (MQ=255)
     ggCAGTTTGAAGTTGCACGCCAAATGGCTGTAGCa                               <  1:1250807/35‑1 (MQ=255)
     ggCAGTTTGAAGTTGCACGCCAAATGGCTGTAGCa                               <  1:6512045/35‑1 (MQ=255)
     ggCAGTTTGAAGTTGCACGCCAAATGGCTGTAGCa                               <  1:13192063/35‑1 (MQ=255)
     ggCAGTTTGAAGTTGCACGCCAAATGGCTGTAGCa                               <  1:9184098/35‑1 (MQ=255)
      gCAGTTTGAAGTTGCACGCCAAATGGCTGgggggg                              >  1:8013564‑M1/1‑29 (MQ=255)
      gCAGTTTGAAGTTGCACGCCAAATGGCTGgggggg                              >  1:9435547‑M1/1‑29 (MQ=255)
      gCAGTTTGAAGTTGCACGCCAAATGGCTGTAGCAt                              <  1:17774285/35‑1 (MQ=255)
      gCAGTTTGAAGTTGCACGCCAAATGGCTGTAGCAt                              <  1:20241804/35‑1 (MQ=255)
      gCAGTTTGAAGATGCACGCCAAATGGCTGTAGCAt                              <  1:19928273/35‑1 (MQ=255)
       cAGTTTGAAGTTGCACGCCAAATGGCTGgggggtt                             >  1:15921627‑M1/1‑28 (MQ=255)
       cAGTTTGAAGTTGCACGCCAAATGGCTGgggggtt                             >  1:3783487‑M1/1‑28 (MQ=255)
       cAGTTTGAAGTTGCACGCCAAATGGCTGggggggt                             >  1:10205804‑M1/1‑28 (MQ=255)
       cAGTTTGAAGTTGCACGCCAAATGGCTGggggggt                             >  1:18458634‑M1/1‑28 (MQ=255)
       cAGTTTGAAGTTGCACGCCAAATGGCTGTAGCAtt                             <  1:3264418/35‑1 (MQ=255)
       cAGTTTGAAGTTGCACGCCAAATGGCTGTAGCAtt                             <  1:4480751/35‑1 (MQ=255)
        aGTTTGAAGTTGCACGCCAAATGGCTGgggggttt                            >  1:15471985‑M1/1‑27 (MQ=255)
        aGTTTGAAGTTGCACGCCAAATGGCTGgggggtgt                            >  1:4629848‑M1/1‑27 (MQ=255)
        aGTTTGAAGTTGCACGCCAAATGGCTGggggggtt                            >  1:176799‑M1/1‑27 (MQ=255)
        aGTTTGAAGTTGCACGCCAAATGGCTGggggggtt                            >  1:11617320‑M1/1‑27 (MQ=255)
        aGTTTGAAGTTGCACGCCAAATGGCTGTAGCAttt                            <  1:10245165/35‑1 (MQ=255)
        aGTTTGAAGTTGCACGCCAAATGGCTGTAGCAttt                            <  1:5862373/35‑1 (MQ=255)
        aGTTTGAAGTTGCACGCCAAATGGCTGTAGCAttt                            <  1:7478922/35‑1 (MQ=255)
        aGTTTGAAGTTGCACGCCAAATGGCTGTAGCAttt                            <  1:8292267/35‑1 (MQ=255)
         gTTTGAAGTTGCACGCCAAATGGCTGggggggttt                           >  1:9556537‑M1/1‑26 (MQ=255)
         gTTTGAAGTTGCACGCCAAATGGCTGggggggttg                           >  1:8515318‑M1/1‑26 (MQ=255)
         gTTTGAAGTTGCACGCCAAATGGCTGggggatttg                           >  1:8652427‑M1/1‑26 (MQ=255)
         gTTTGAAGTTGCACGCCAAATGGCTGTAGCATTTg                           <  1:2741393/35‑1 (MQ=255)
         gTTTGAAGTTGCACGACAAATGGCTGTAGCATTTg                           <  1:15686309/35‑1 (MQ=255)
          tttGAAGTTGCACGCCAAATGGCTGggggggtttt                          >  1:2631182‑M1/1‑25 (MQ=255)
          tttGAAGTTGCACGCCAAATGGCTGTAGCATTTGc                          <  1:8476241/35‑1 (MQ=255)
          tttGAAGTTGCACGCCAAATGGCTGTAGCATTTGc                          <  1:11724287/35‑1 (MQ=255)
           ttGAAGTCGCACGCCAAATGGCTGTAGCATTTGcc                         <  1:14853431/35‑1 (MQ=255)
            tGAAGTTGCACGCCAAATGGCTGggggggtttgtg                        >  1:3808703‑M1/1‑23 (MQ=255)
             gAAGTTGCACGCCAAATGGCTGTAGCATTTGCCgg                       <  1:17548249/35‑1 (MQ=255)
             gAAGTTGCACGCCAAATGGCTGTAGCATTTGCCgg                       <  1:8594575/35‑1 (MQ=255)
               aGTTGCACGCCAAATGGCTGTAGCATTTGCCGGAc                     <  1:5217613/35‑1 (MQ=255)
                gTTGCACGCCAAATGGCTGTAGCATTTGCCGGACt                    <  1:1002153/35‑1 (MQ=255)
                gTTGCACGCCAAATGGCTGTAGCATTTGCCGGACt                    <  1:12504016/35‑1 (MQ=255)
                  tGCACGCCAAATGGCTGTAGCATTTGCCGGACTGa                  <  1:18275009/35‑1 (MQ=255)
                   gCACGCCAAATGGCTGTAGCATTTGCCGGACTGaa                 <  1:10115391/35‑1 (MQ=255)
                   gCACGCCAAATGGCTGTAGCATTTGCCGGACTGaa                 <  1:13644567/35‑1 (MQ=255)
                   gCACGCCAAATGGCTGTAGCATTTGCCGGACTGaa                 <  1:15006036/35‑1 (MQ=255)
                    cACGCCAAATGGCTGTAGCATTTGCCGGACTGaaa                <  1:20587428/35‑1 (MQ=255)
                    cACGCCAAATGGCTGTAGCATTTGCCGGACTGaaa                <  1:11320891/35‑1 (MQ=255)
                     aCGCCAAATGGCTGTAGCATTTGCCGGACTGaaaa               <  1:13705050/35‑1 (MQ=255)
                      cGCCAAATGGCTGTAGAATTTGCCGGACTGAAAAc              <  1:3352907/35‑1 (MQ=255)
                        ccAAATGGCTGTAGCATTTGCCGGACTGAAAAcgc            <  1:1199631/35‑1 (MQ=255)
                         cAAATGGCTGTAGCATTTGCCGGACTGAAAAcgcg           <  1:331417/35‑1 (MQ=255)
                         cAAATGGCTGTAGCATTTGCCGGACTGAAAAcgcg           <  1:14647207/35‑1 (MQ=255)
                          gaaTGGATGTAGCATTTGCCGGACTGAAAACgcgc          <  1:5771126/34‑1 (MQ=255)
                          aaaTGTCTGTAGCATTTGCCGGACTGAAAACgcgc          >  1:2214756/1‑35 (MQ=255)
                          aaaTGGCTGTAGCATTTGCCGGACTGAAAACgcgc          <  1:4279125/35‑1 (MQ=255)
                          aaaTGGCTGTAGCATTTGCCGGACTGAAAACgcgc          <  1:5381150/35‑1 (MQ=255)
                           aaTGGCTGTAGCATTTGCCGGACTGAAAACGCGCt         <  1:19604604/35‑1 (MQ=255)
                           aaTGGCTGTAGCATTTGCCGGACTGAAAACGCGCt         <  1:4369978/35‑1 (MQ=255)
                           aaTGGCTGTAGCATTTGCCGGACTGAAAACGAGCt         <  1:18065176/35‑1 (MQ=255)
                             tGGCTGTAGCATTTGCCGGACTGAAAACGCGCTAc       <  1:16851034/35‑1 (MQ=255)
                               gCTGTAGCATTTGCCGGACTGAAAACGCGCTAccc     >  1:19514061/1‑35 (MQ=255)
                               gCTGTAGCATTTGCCGGACTGAAAACGCGCTAccc     <  1:8217092/35‑1 (MQ=255)
                               gCTGTAGCATTTGCAGGACTGAAAACGCGCTAccc     <  1:11184740/35‑1 (MQ=255)
                                cTGTAGCATTTGCCGGACTGAAAACGCGCTACCCg    >  1:14772986/1‑35 (MQ=255)
                                cTGTAGCATTTGCCGGACTGAAAACGCGCTACCCg    >  1:17813967/1‑35 (MQ=255)
                                cTGTAGCATTTGCCGGACTGAAAACGCGCTACCCg    <  1:14259583/35‑1 (MQ=255)
                                cTGTAGCATTTGCCGGACTGAAAACGCGCTACCCg    >  1:20496091/1‑35 (MQ=255)
                                cTGTAGCATTTGCCGGACTGAAAACGCGCTACCCg    <  1:3780810/35‑1 (MQ=255)
                                cTGTAGCATTTGCCGGACTGAAAACGCGCTACCCg    >  1:3068643/1‑35 (MQ=255)
                                 tGTAGCATTTGCCGGACTGAAAACGCGCTACCCGc   <  1:10855238/35‑1 (MQ=255)
                                 tGTAGCATTTGCCGGACTGAAAACGCGCTACCCGc   >  1:1112849/1‑35 (MQ=255)
                                 tGTAGCATTTGCCGGACTGAAAACGCGCTACCCGc   <  1:8517268/35‑1 (MQ=255)
                                 tGTAGCATTTGCCGGACTGAAAACGCGCTACCCGc   >  1:15308288/1‑35 (MQ=255)
                                 tGTAGCATTTGCCGGACTGAAAACGCGCTACCCGc   <  1:4824149/35‑1 (MQ=255)
                                 tGTAGCATTTGCCGGACTGAAAACGCGCTACCCGc   <  1:4730313/35‑1 (MQ=255)
                                  gTAGCATTTTCCGGACTGAAAACGCGCTACCCGCa  >  1:535988/1‑35 (MQ=255)
                                  gTAGCATTTGCCGGACTGAAAACGCGCTACCCGCa  >  1:14181467/1‑35 (MQ=255)
                                  gTAGCATTTGCCGGACTGAAAACGCGCTACCCGCa  >  1:3455033/1‑35 (MQ=255)
                                  gTAGCATTTGCCGGACTGAAAACGCGCTACCCGCa  <  1:14222347/35‑1 (MQ=255)
                                  gTAGCATTTGCCGGACTGAAAACGCGCTACCCGCa  >  1:7042975/1‑35 (MQ=255)
                                  gTAGCATTTGCCGGACTGAAAACGCGCTACCCGCa  >  1:15811471/1‑35 (MQ=255)
                                  gTAGCATTTGCCGGACTGAAAACGCGCTACCCGCa  >  1:911375/1‑35 (MQ=255)
                                  |                                  
TGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGTAGCATTTGCCGGACTGAAAACGCGCTACCCGCA  >  REL606/2981367‑2981435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.