New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1493185140 (1.360)10 (0.120) 4/38 NT 10.9% intergenic (‑10/‑232) yncD/yncE predicted iron outer membrane transporter/hypothetical protein
?REL606 3269358 = 53 (0.650)coding (415/972 nt) ispB octaprenyl diphosphate synthase

Only 100 of 244 total aligned reads displayed.

TCTGTCGGACGGAAAAAATCTTCATGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCGTTATGGTAATG  >  REL606/1493151‑1493219
                                  |                                  
tCTGTCGGACGGAAAAAATCTTCATGAAAAAAGCC                                    <  1:12949359‑M1/35‑1 (MQ=255)
tCTGTCGGACGGAAAAAATCTTCATGAAAAAAGCC                                    <  1:12390848‑M1/35‑1 (MQ=255)
 cTGTCGGACGGAAAAAATCTTCATGAAAAAAGCCa                                   <  1:10438207/35‑1 (MQ=255)
 cTGTCGGACGGAAAAAATCTTCATGAAAAAAGCCa                                   >  1:9004635/1‑35 (MQ=255)
  tGTCGGACGGAAAAAATCTTCATGAAAAAAGCCAg                                  <  1:5973265/35‑1 (MQ=255)
  tGTCGGACGGAAAAAATCTTCATGAAAAAAGCCAg                                  <  1:9360474/35‑1 (MQ=255)
   gTCGGGCGGAAAAAATCTTCATGAAAAAAGCCAgg                                 <  1:19990301/35‑1 (MQ=255)
   gTCGGACGGAAAAAATCTTCATGAAAAAAGCCAgg                                 >  1:5329005/1‑35 (MQ=255)
   gTCGGACGGAAAAAATCTTCATGAAAAAAGCCAgg                                 <  1:6018268/35‑1 (MQ=255)
   gTCGGACGGAAAAAATCTTCATGAAAAAAGCCAgg                                 >  1:11665446/1‑35 (MQ=255)
    tCGGACGGAAAAAATCTTCATGAAAAAAGCCAGGt                                <  1:5641086/35‑1 (MQ=255)
    tCGGACGGAAAAAATCTTCATGAAAAAAGCCAGGt                                <  1:8434213/35‑1 (MQ=255)
    tCGGACGGAAAAAATCTTCATGAAAAAAGCCAGGt                                >  1:17995063/1‑35 (MQ=255)
      ggacggaAAAAATCTTCATGAAAAAAGCCAGGTTa                              >  1:5651070/1‑35 (MQ=255)
      ggacggaAAAAATCTTCATGAAAAAAGCCAGGTTa                              >  1:14019922/1‑35 (MQ=255)
      ggacggaAAAAATCTTCATGAAAAAAGCCAGGTTa                              >  1:17825693/1‑35 (MQ=255)
      ggacggaAAAAATCTTCATGAAAAAAGCCAGGTTa                              >  1:11196783/1‑35 (MQ=255)
       gacggaAAAAATCTTCATGAAAAAAGCCAGGTTaa                             >  1:13050184/1‑35 (MQ=255)
       gacggaAAAAATCTTCATGAAAAAAGCCAGGTTaa                             <  1:3774882/35‑1 (MQ=255)
       gacggaAAAAATCTTCATGAAAAAAGCCAGGTTaa                             >  1:19401744/1‑35 (MQ=255)
       gacggaAAAAATCTTCATGAAAAAAGCCAGGTTaa                             >  1:15406717/1‑35 (MQ=255)
        acggaAAAAATCTTCATGAAAAAAGCCAGGTTAAg                            >  1:8567053/1‑35 (MQ=255)
         cggaAAAAATCTTCATGAAAAAAGCCAGGTTAAGa                           <  1:7010802/35‑1 (MQ=255)
         cggaAAAAATCTTCATGAAAAAAGCCAGGTTAAGa                           >  1:4598980/1‑35 (MQ=255)
         cggaAAAAATCTTCATGAAAAAAGCCAGGTTAAGa                           <  1:3286987/35‑1 (MQ=255)
          ggaAAAAATCTTCATGAAAAAAGCCAGGTTAAGaa                          <  1:3332047/35‑1 (MQ=255)
          ggaAAAAATCTTCATGAAAAAAGCCAGGTTAAGaa                          >  1:19848597/1‑35 (MQ=255)
          ggaAAAAATCTTCATGAAAAAAGCCAGGTTAAGaa                          <  1:17542349/35‑1 (MQ=255)
           gaAAAAATCTTCATGAAAAAAGCCAGGTTAAGAAt                         >  1:10596092/1‑35 (MQ=255)
            aaaaaaTCTTCATGAAAAAAGCCAGGTTAAGAATg                        >  1:15984886/1‑35 (MQ=255)
            aaaaaaTCTTCATGAAAAAAGCCAGGTTAAGAATg                        <  1:2251372/35‑1 (MQ=255)
            aaaaaaTCTTCATGAAAAAAGCCAGGTTAAGAATg                        <  1:14513356/35‑1 (MQ=255)
            aaaaaaTCTTCATGAAAAAAGCCAGGTTAAGAATg                        <  1:6799638/35‑1 (MQ=255)
             aaaaaTCTTCATGAAAAAAGCCAGGTTAAGAATgg                       >  1:18664078/1‑35 (MQ=255)
              aaaaTCTTCATGAAAAAAGCCAGGTTAAGAATggg                      >  1:14855518/1‑35 (MQ=255)
              aaaaTCTTCATGAAAAAAGCCAGGTTAAGAATggg                      <  1:20489979/35‑1 (MQ=255)
              aaaaTCTTCATGAAAAAAGCCAGGTTAAGAATggg                      >  1:14188599/1‑35 (MQ=255)
              aaaaTCTTCATGAAAAAAGCCAGGTTAAGAATggg                      >  1:12483656/1‑35 (MQ=255)
              aaaaTCTTCATGAAAAAAGCCAGGTTAAGAATggg                      <  1:10804570/35‑1 (MQ=255)
               aaaTCTTCATGAAAAAAGCCAGGTTAAGAATGGGa                     >  1:19155771/1‑35 (MQ=255)
                aaTCTTCATGAAAAAAGCCAGGTTAAGAATGGGaa                    >  1:16804971/1‑35 (MQ=255)
                aaTCTTCATGAAAAAAGCCAGGTTAAGAATGGGaa                    >  1:7188094/1‑35 (MQ=255)
                aaTCTTCATGAAAAAAGCCAGGTTAAGAATGGGaa                    <  1:11322700/35‑1 (MQ=255)
                aaTCTTCATGAAAAAAGCCAGGTTAAGAATGGGaa                    >  1:9533687/1‑35 (MQ=255)
                  tCTTCATGAAAAAAGCCAGGTTAAGAATGGGaaaa                  <  1:5518382/35‑1 (MQ=255)
                   cTTCATGAAAAAAGCCAGGTTAAGAATGGGAAAAc                 >  1:9653843/1‑35 (MQ=255)
                   cTTCATGAAAAAAGCCAGGTTAAGAATGGGAAAAc                 <  1:11484823/35‑1 (MQ=255)
                    ttCATGAAAAAAGCCAGGTTAAGAATGGGAAAACg                <  1:9064100/35‑1 (MQ=255)
                    gtcATAAAAAAAGCCgtaaacgtcatcgcagaagg                <  1:19017752‑M1/34‑21 (MQ=255)
                    gtcAGGAAAAAAGCCgtaaacgtcatcgcagaagg                <  1:2460917‑M1/34‑21 (MQ=255)
                     tCAGGAAAAAAGCCgtaaacgtcatcgcagaaggt               <  1:5382880‑M1/35‑22 (MQ=255)
                      cATGAAAAAAGCCAGGTTAAGAATGGGAAAACGcc              >  1:15174729/1‑35 (MQ=255)
                      cATGAAAAAAGCCAGGTTAAGAATGGGAAAACGcc              <  1:1357635/35‑1 (MQ=255)
                      cATGAAAAAAGCCAGGTTAAGAATGGGAAAACGcc              <  1:14992299/35‑1 (MQ=255)
                      cATGAAAAAAGCCAGGTTAAGAATGGGAAAACGcc              >  1:11241037/1‑35 (MQ=255)
                       aTGTAAAAAGCCgtaaacgtcatcgcagaaggtga             <  1:16674347‑M1/35‑24 (MQ=255)
                       aTGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCg             >  1:19432498/1‑35 (MQ=255)
                       aTGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCg             <  1:19639581/35‑1 (MQ=255)
                       aTGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCg             <  1:15592391/35‑1 (MQ=255)
                       aTGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCg             <  1:13628097/35‑1 (MQ=255)
                        taaaaaaagcCgtaaacgtcatcgcagaaggtgaa            <  1:15614270‑M1/33‑25 (MQ=255)
                        tGAAAAAAGCCgtaaacgtcatcgcagaaggtgaa            <  1:18106712‑M1/35‑25 (MQ=255)
                        tGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCGt            <  1:8788943/35‑1 (MQ=255)
                        tGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCGt            >  1:20085585/1‑35 (MQ=255)
                         gtaaaaagcCgtaaacgtcatcgcagaaggtgaag           <  1:3627903‑M1/33‑26 (MQ=255)
                         gAAAAAAGCTAGGTTAAGAATGGGAAAACGCCGtt           >  1:12874731/1‑35 (MQ=255)
                         gAAAAAAGCCgtaaacgtcatcgcagaaggtgaag           <  1:17310271‑M1/35‑26 (MQ=255)
                         aaaaaaagCCgtaaacgtcatcgcagaaggtgaag           <  1:19271404‑M1/34‑26 (MQ=255)
                          taaaaagCCgtaaacgtcatcgcagaaggtgaagt          <  1:7725638‑M1/34‑27 (MQ=255)
                          aaaaaaGCCAGGTTAAGAATGGGAAAACGCCGTTa          >  1:4394693/1‑35 (MQ=255)
                          aaaaaaGCCAGGTTAAGAATGGGAAAACGCCGTTa          >  1:7921061/1‑35 (MQ=255)
                           aaaaaGCCgtaaacgtcatcgcagaaggtgaagtt         <  1:3684132‑M1/35‑28 (MQ=255)
                           aaaaaGCCAGGTTAAGAATGGGAAAACGCCGTTAt         >  1:1677841/1‑35 (MQ=255)
                            aaaaGCCgtaaacgtcatcgcagaaggtgaagttc        <  1:10896016‑M1/35‑29 (MQ=255)
                            aaaaGCCgtaaacgtcatcgcagaaggtgaagttc        <  1:18680726‑M1/35‑29 (MQ=255)
                            aaaaGCCAGGTTAAGAATGGGAAAACGCCGTTATg        >  1:20007300/1‑35 (MQ=255)
                             aaaGCCAGGTTAAGAATGGGAAAACGCCGTTATgg       <  1:814457/35‑1 (MQ=255)
                             aaaGCCAGGTTAAGAATGGGAAAACGCCGTTATgg       >  1:2188921/1‑35 (MQ=255)
                             aaaGCCAGGTTAAGAATGGGAAAACGCCGTTATgg       >  1:17670800/1‑35 (MQ=255)
                              aaGCCgtaaacgtcatcgcagaatgtgaagttctg      >  1:13176631‑M1/1‑5 (MQ=255)
                              aaGCCAGGTTAAGAATGGGAAAACGCCGTTATGGt      <  1:12007549/35‑1 (MQ=255)
                              aaGCCAGGTTAAGAATGGGAAAACGCCGTTATGGt      >  1:4152371/1‑35 (MQ=255)
                              aaGCCAGGTTAAGAATGGGAAAACGCCGTTATGGt      >  1:2358010/1‑35 (MQ=255)
                              aaGCCAGGTTAAGAATGGGAAAACGCCGTTATGGt      <  1:17175026/35‑1 (MQ=255)
                               aGCCgtaaacgtcatcgcagaaggtgaagttctgc     <  1:12247447‑M1/35‑32 (MQ=255)
                               aGCCgtaaacgtcatcgcagaaggtgaagttctgc     >  1:4036524‑M1/1‑4 (MQ=255)
                               aGCCAGGTTAAGAATGGGAAAACGCCGTTATGGTa     >  1:10284999/1‑35 (MQ=255)
                               aGCCAGGTTAAGAATGGGAAAACGCCGTTATGGTa     <  1:6863595/35‑1 (MQ=255)
                               aGCCAGGTTAAGAATGGGAAAACGCCGTTATGGTa     >  1:16276352/1‑35 (MQ=255)
                                gCCgtaaacgtcatcgcagaaggtgaagttctgca    >  1:15519470‑M1/1‑3 (MQ=255)
                                gCCgtaaacgtcatagcagaaggtgaagttctgca    <  1:20288843‑M1/35‑33 (MQ=255)
                                gCCAGGTTAAGAATGGGAAAACGCCGTTATGGTaa    <  1:6167384/35‑1 (MQ=255)
                                 ccgtaaacgtcatcgcagaaggtgaagttctgcaa   <  1:6276713‑M1/35‑34 (MQ=255)
                                 ccgtaaacgtcatcgcagaaggtgaagttctgcaa   >  1:1905636‑M1/1‑2 (MQ=255)
                                 ccgtaaacgtcatcgcagaaggtgaagttctgcaa   >  1:18248977‑M1/1‑2 (MQ=255)
                                 ccAGGTTAAGAATGGGAAAACGCCGTTATGGTAAt   <  1:5843428/35‑1 (MQ=255)
                                 ccAGGTTAAGAATGGGAAAACGCCGTTATGGTAAt   <  1:19307188/35‑1 (MQ=255)
                                  cgtaaacgtcatcgcagaaggtgaagttctgcaac  >  1:13281076‑M1/1‑1 (MQ=255)
                                  cAGGTTAAGAATGGGGAAACGCAGTTATGGTAATg  <  1:1460688/35‑1 (MQ=37)
                                  cAGGTTAAGAATGGGAAAACGCCGTTATGGTAATg  <  1:15833638/35‑1 (MQ=255)
                                  |                                  
TCTGTCGGACGGAAAAAATCTTCATGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCGTTATGGTAATG  >  REL606/1493151‑1493219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.