New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 188990587 (0.850)12 (0.130) 5/42 NT 17.4% coding (1053/1374 nt) yebQ predicted transporter
?REL606 2379272 = 38 (0.420)coding (970/1014 nt) usg hypothetical protein

Only 100 of 103 total aligned reads displayed.

TACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCAGCGCGCCGCCAAAGCGAACGTTATCGGCC  >  REL606/2379238‑2379306
                                  |                                  
tACTCCTGCACCAGTTTCTCGGCGATTTTTATTGc                                    >  1:8399508/1‑35 (MQ=255)
tACTCCTGCACCAGTTTCTCGGCGATTTTTACTGc                                    <  1:2725849/35‑1 (MQ=255)
 aCTCCTGCACCAGTTTCTCGGCGATTTTTTCTGcc                                   >  1:12963806/1‑35 (MQ=255)
 aCTCCTGCACCAGTTTCTCGGCGATTTTTTCTGcc                                   >  1:1116766/1‑35 (MQ=255)
 aCTCCTGCACCAGTTTCTCGGCGATTTTTACTGcc                                   >  1:399657/1‑35 (MQ=255)
 aCTCCTGCACCAGTTTCTCGGCGATTTTTACTGcc                                   >  1:14995669/1‑35 (MQ=255)
  cTCCTGCACCAGTTTCTCGGCGATTTTTTATGccc                                  >  1:6064351/1‑34 (MQ=25)
  cTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCa                                  >  1:3045363/1‑35 (MQ=255)
   tCCTGCACCAGTTTCTCGGCGATTTTTTCTTccct                                 >  1:13046365/1‑33 (MQ=25)
   tCCTGCACCAGTTTCTCGGCGATTTTTACTGCCAt                                 >  1:9142183/1‑35 (MQ=255)
   tCCTGCACCAGTTTCTCGGCGAATTTTTCTGccct                                 >  1:8678339/1‑33 (MQ=25)
    ccTGCACCAGTTTCTCGGCGATTTTTTCTGCCATc                                >  1:9380240/1‑35 (MQ=255)
     cTGCACCAGTTTCTCGGCGATTTTTTCTGCCCTcc                               >  1:5022412/1‑34 (MQ=25)
     cTGCACCAGTTTCTCGGCGATTTTTTCTGCCACCa                               >  1:3780116/1‑35 (MQ=25)
      tGCACCAGTTTCTCGGCGATTTTTACTGCCATCac                              >  1:2420336/1‑34 (MQ=255)
       gCACCAGTTTCTCGGCGTTTTTTCCTGCCATCAgc                             <  1:17819668/35‑1 (MQ=37)
         aCCAGTTTCTCGGCGATTTTTATTGCCATCAgccc                           >  1:5192553/1‑33 (MQ=37)
          ccAGTTTCTCGGCGATTTTTCCTGCCATCAgcgcg                          <  1:5991289/35‑1 (MQ=255)
           cattttCTCGGCGATTTTTCCTGCCATCAgcgcgc                         <  1:9511628/32‑1 (MQ=25)
           cAGTTTCTCGGCGATTTTTACTGCCATCAgggcgc                         <  1:751720/35‑1 (MQ=255)
            aGTTTCTCTGCGATTTTTACTGCCATCAGCGcgcc                        >  1:11698324/1‑35 (MQ=255)
               ttCTCGGCGTTTTTTCCTGCCATCAGCGCgccgcc                     <  1:3303053/35‑1 (MQ=25)
               ttCCCGGCTTTTTTTCCTGCCATCAGCGCgccgcc                     <  1:6199115/35‑1 (MQ=12)
                tctcGGCTTTTTTCCCTGCCATCAGCGCGCCGCCa                    <  1:1728460/35‑1 (MQ=16)
                tcccGGCGTTTTTCCCTGCCATCAGCGCGCCGCCa                    <  1:10191823/32‑1 (MQ=12)
                 gcgggCGTTTTTTCCTGCCATCAGCGCGCCGCCaa                   <  1:7680882/32‑1 (MQ=21)
                 cgcggcttttttccctgCCATCAGCGCGCCGCCaa                   <  1:2480669‑M2/18‑1 (MQ=255)
                 ccgggcttttttccctgCCATCAGCGCGCCGCCaa                   <  1:3328865‑M2/18‑1 (MQ=255)
                   cGGCGATTTTTACTGCCATCAGCGCGCCGCCAAAg                 >  1:12458918/1‑35 (MQ=255)
                    gggttttttccctgCCATCAGCGCGCCGCCAAAGc                <  1:8997447‑M2/21‑1 (MQ=255)
                    ggcttttttccctgCCATCAGCGCGCCGCCAAAGc                <  1:5650751‑M2/21‑1 (MQ=255)
                    ggCGATTTTTACTGCCATCAGCGCGCCGCCAAAGc                >  1:13870074/1‑35 (MQ=255)
                    ggCGATTTTTACTGCCATCAGCGCGCCGCCAAAGc                >  1:4740871/1‑35 (MQ=255)
                    ggCGATTTTTACTGCCATCAGCGCGCCGCCAAAGc                >  1:20535590/1‑35 (MQ=255)
                    ggCGATTTTTACTGCCATCAGCGCGCCGCCAAAGc                >  1:17496500/1‑35 (MQ=255)
                    ggCGATTTTTACTGCCATCAGCGCGCCGCCAAAGc                >  1:12037236/1‑35 (MQ=255)
                     gcttttttccctgCCATCAGCGCGCCGCCAAAGCg               <  1:1300602‑M2/22‑1 (MQ=255)
                     gcttttttccctgCCATCAGCGCGCAGCCAAAGCg               <  1:13900200‑M2/22‑1 (MQ=255)
                     gCGATTTTTACTGCCATCAGCGCGCCGCCAAAGCg               >  1:1396325/1‑35 (MQ=255)
                     gCGATTTTTACTGCCATCAGCGCGCCGCCAAAGCg               >  1:9601355/1‑35 (MQ=255)
                     gCGATTTTTACTGCCATCAGCGCGCCGCCAAAGCg               >  1:19216139/1‑35 (MQ=255)
                     gCGATTTTTACTGCCATCAGCGCGCCGCCAAAGCg               >  1:7053173/1‑35 (MQ=255)
                      cGATTTTTACTGCCATCAGCGCGCCGCCAAAGCGa              >  1:14674223/1‑35 (MQ=255)
                      cGATTTTTACTGCCATCAGCGCGCCGCCAAAGCGa              >  1:1460482/1‑35 (MQ=255)
                      cGATTTTTACTGCCATCAGCGCGCCGCCAAAGCGa              >  1:2725561/1‑35 (MQ=255)
                       gtttttccctgCCATCAGCGCGCCGCCAAAGCGaa             <  1:1392205‑M2/24‑1 (MQ=255)
                       gATTTTTACTGCCATCAGCGCGCCGCCAAAGCTaa             >  1:11894858/1‑35 (MQ=255)
                       gATTTTTACTGCCATCAGCGCGCCGCCAAAGCGaa             >  1:4209133/1‑35 (MQ=255)
                       gATTTTTACTGCCATCAGCGCGCCGCCAAAGCGaa             >  1:10824285/1‑35 (MQ=255)
                       gATTTTTACTGCCATCAGCGCGCCGCCAAAGCGaa             >  1:788694/1‑35 (MQ=255)
                       gATTTTTACTGCCATCAGCGCGCCGCCAAAGCGaa             >  1:18000467/1‑35 (MQ=255)
                       gATTTTTACTGCCATCAGCGCGCCGCCAAAGCGaa             >  1:619590/1‑35 (MQ=255)
                       gATATTTACTGCCATCAGCGCGCCGCCAAAGCGaa             >  1:2791146/1‑35 (MQ=255)
                        tttttccctgCCATCAGCGCGCCGCCAAAGCGAAc            <  1:7328979‑M2/25‑1 (MQ=255)
                        aTTTTTACTGCCATCAGCGCGCCGCCAAAGCGAAc            >  1:11291110/1‑35 (MQ=255)
                        aTTTTTACTGCCATCAGCGCGCCGCCAAAGCGAAc            >  1:19992716/1‑35 (MQ=255)
                        aTTTTTACTGCCATCAGCGCGCCGCCAAAGCGAAc            >  1:2866789/1‑35 (MQ=255)
                         tttttACTGCCATCAGCGCGCCGCCAAAGCGAACg           >  1:9798640/1‑35 (MQ=255)
                         ttttccctgCCATCAGCGCGCCGCCAAAGCGAACg           <  1:15476900‑M2/26‑1 (MQ=255)
                         ttttccctgCCATCAGCGCGCCGCCAAAGCGAACg           <  1:16873137‑M2/26‑1 (MQ=255)
                         ttttccctgCCATCAGCGCGCCGCCAAAGCGAACg           <  1:5668091‑M2/26‑1 (MQ=255)
                          ttttACTGCCATCAGCGCGCCGCCAAAGCGAACGt          >  1:11403214/1‑35 (MQ=255)
                          ttttACTGCCATCAGCGCGCCGCCAAAGCGAACGt          >  1:14465257/1‑35 (MQ=255)
                          tttccctgCCATCAGCGCGCCGCCAAAGCGAACGt          <  1:7138812‑M2/27‑1 (MQ=255)
                           tttACTGCCATCAGCGCGCCGCCAAAGCGAACGtt         >  1:14843035/1‑35 (MQ=255)
                           tttACTGCCATCAGCGCGCCGCCAAAGCGAACGtt         >  1:13604510/1‑35 (MQ=255)
                           tttACTGCCATCAGCGCGCCGCCAAAGCGAACGtt         >  1:2464163/1‑35 (MQ=255)
                           ttccctgCCATCAGCGCGCCGCCAAAGCGAACGtt         <  1:9634183‑M2/28‑1 (MQ=255)
                           ttccctgCCATCAGCGCGCCGCCAAAGCGAACGtt         <  1:3193041‑M2/28‑1 (MQ=255)
                           tctcctgCCATCAGCGCGCCGCCAAAGCGAACGtt         <  1:17616630‑M2/28‑1 (MQ=255)
                            ttACTGCCATCAGCGCGCCGCCAAAGCGAACGTTa        >  1:8509933/1‑35 (MQ=255)
                            ttACTGCCATCAGCGCGCCGCCAAAGCGAACGTTa        >  1:19195845/1‑35 (MQ=255)
                            ttACTGCCATCAGCGCGCCGCCAAAGCGAACGTTa        >  1:16669113/1‑35 (MQ=255)
                            accctgCCATCAGCGCGCCGCCAAAGCGAACGTTa        <  1:11081078‑M2/29‑1 (MQ=255)
                             tcctgCCATCAGCGCGCCGCCAAAGCGAACGTTAt       <  1:8408564‑M2/30‑1 (MQ=255)
                             tACTGCCATCAGCGCGCCGCCAAAGCGAACGTTAt       >  1:19277116/1‑35 (MQ=255)
                              cctgCCATCAGCGCGCCGCCAAAGCGAACGTTATc      <  1:11349244‑M2/31‑1 (MQ=255)
                              cctgCCATCAGCGCGCCGCCAAAGCGAACGTTATc      <  1:8993298‑M2/31‑1 (MQ=255)
                              aCTGCCATCAGCGCGCCGCCAAAGCGAACGTTATc      >  1:7670843/1‑35 (MQ=255)
                              aCTGCCATCAGCGCGCCGCCAAAGCGAACGTTATc      >  1:7053733/1‑35 (MQ=255)
                              aCTGCCATCAGCGCGCCGCCAAAGCGAACGTTATc      >  1:14243954/1‑35 (MQ=255)
                              aCTGCCATCAGCGCGCCGCCAAAGCGAACGTTATc      >  1:17914639/1‑35 (MQ=255)
                               ctgCCATCAGCGCGCCGCCAAAGCGAACGTTATCg     <  1:13931828‑M2/32‑1 (MQ=255)
                               ctgCCATCAGCGCGCCGCCAAAGCGAACGTTATCg     <  1:3037976‑M2/32‑1 (MQ=255)
                               ctgCCATCAGCGCGCCGCCAAAGCGAACGTTATCg     >  1:14095834‑M2/4‑35 (MQ=255)
                                tgCCATCAGCGCGCTGCCAAAGCGAACGTTATCgg    >  1:16245478‑M2/3‑35 (MQ=255)
                                tgCCATCAGCGCGCCGCCAAAGCGAACGTTATCgg    >  1:9024228‑M2/3‑35 (MQ=255)
                                tgCCATCAGCGCGCCGCCAAAGCGAACGTTATCgg    <  1:15609270‑M2/33‑1 (MQ=255)
                                tgCCATCAGCGCGCCGCCAAAGCGAACGTTATCgg    >  1:3229861‑M2/3‑35 (MQ=255)
                                tgCCATCAGCGCGCCGCCAAAGCGAACGTTATCgg    <  1:741783‑M2/33‑1 (MQ=255)
                                tgCCATCAGCGCGCCGCCAAAGCGAACGTTATCgg    <  1:1375175‑M2/33‑1 (MQ=255)
                                tgCCATCAGCGCGCCGCCAAAGCGAACGTTATCgg    <  1:18630399‑M2/33‑1 (MQ=255)
                                tgCCACCAGCGCGCCGCCAAAGCGAACGTTATCgg    <  1:20603326‑M2/33‑1 (MQ=255)
                                 gCCATCAGCGCGCCGCCAAAGCGAACGTTATCGGc   >  1:3704523‑M2/2‑35 (MQ=255)
                                 gCCATCAGCGCGCCGCCAAAGCGAACGTTATCGGc   >  1:11999660‑M2/2‑35 (MQ=255)
                                 gCCATCAGCGCGCCGCCAAAGCGAACGTTATCGGc   <  1:4353121‑M2/34‑1 (MQ=255)
                                  ccATCAGCGCGCCGCCAAAGCGAACGTTATCgggc  >  1:13668262/1‑33 (MQ=255)
                                  ccATCAGCGCGCCGCCAAAGCGAACGTTATCGGcc  >  1:5828362/1‑35 (MQ=255)
                                  ccATCAGCGCGCCGCCAAAGCGAACGTTATCGGcc  <  1:4202887/35‑1 (MQ=255)
                                  ccATCAGCGCGCCGCCAAAGCGAACGTTATCGGcc  >  1:9733673/1‑35 (MQ=255)
                                  |                                  
TACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCAGCGCGCCGCCAAAGCGAACGTTATCGGCC  >  REL606/2379238‑2379306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.