New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2389861 =74 (0.720)12 (0.150) 5/38 NT 19.1% coding (116/825 nt) mepA penicillin‑insensitive murein endopeptidase
?REL606 = 2877079 43 (0.530)intergenic (‑276/+39) araE/kduD arabinose transporter/2‑deoxy‑D‑gluconate 3‑dehydrogenase

AACCCAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2389899‑2389861
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagGGTTTTTTATATCTGTAGATCATCATAATCCATA  <  REL606/2877079‑2877046
                                                                         
AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG                                        <  1:15766690/35‑1
AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG                                        >  1:16479234/1‑35
AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG                                        >  1:13988346/1‑35
AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG                                        >  1:13163069/1‑35
AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG                                        <  1:1243/35‑1
AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG                                        >  1:18951707/1‑35
AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG                                        >  1:4252470/1‑35
AACCCAACCTGTGCCGGGTAGCGCACAATCGATAG                                        >  1:6608684/1‑35
 cCCCAACCTGTGCCGGGTAGCGCACAATCGATAGG                                       <  1:3093037/34‑1
 ACCCAACCTGTGCCGGGTAGCGCACAATCGATAGG                                       >  1:1104978/1‑35
 ACCCAACCTGTGCCGGGTAGCGCACAATCGATAGG                                       >  1:297792/1‑35
 ACCCAACCTGTGCCGGGTAGCGCACAATCGATAGG                                       >  1:11860040/1‑35
 ACCCAACCTGTGCCGGGTAGCGCACAATCGATAGG                                       >  1:1044003/1‑35
 ACCCAACCTGTGCCGGGTAGCGCACAATCGATAGG                                       >  1:12335165/1‑35
  CCCAACCTGTGCCGGGTAGCGCACAATCGATAGGC                                      <  1:1750813/35‑1
   CCAGCCTGTGCCGGGTAGCGCACAATCGATAGGCA                                     <  1:13439752/35‑1
   CCAACCTGTGCCGGGTAGCGCACAATCGATAGGCA                                     >  1:6112328/1‑35
   CCAACCTGTGCCGGGTAGCGCACAATCGATAGGCA                                     >  1:1875428/1‑35
   CCAACCTGTGCCGGGTAGCGCACAATCGATAGGCA                                     >  1:12908951/1‑35
   CCAACCTGTGCCGGGTAGCGCACAATCGATAGGCA                                     >  1:5751240/1‑35
   CCAACCTGTGCCGGGTAGCGCACAATCGATAGGCA                                     >  1:6443851/1‑35
    CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG                                    <  1:17478388/35‑1
    CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG                                    >  1:17082418/1‑35
    CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG                                    <  1:5750520/35‑1
    CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG                                    >  1:8759071/1‑35
    CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG                                    <  1:10498473/35‑1
    CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG                                    <  1:10885735/35‑1
    CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG                                    <  1:10396417/35‑1
    CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG                                    >  1:1188650/1‑35
    CAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG                                    <  1:10006172/35‑1
     AACCTGTGCCGGGTAGCGCACAATCGATAGGCAGG                                   >  1:16951609/1‑35
      ACCTGTGCCGGGTAGCTCACAATCGATAGGCAGGG                                  >  1:4394880/1‑35
      ACCTGTGCCGGGTAGCGCACAATCGATAGGCAGGt                                  >  1:2508952/1‑34
      ACCTGTGCCGGGTAGCGCACAATCGATAGGCAGGG                                  >  1:16658529/1‑35
       CCTGTGCCGGGTAGCGCACAATCGATAGGCAGGGT                                 >  1:18780219/1‑35
        CTGTGCCGGGTAGCGCACAATCGATAGGCAGGTTT                                >  1:8843388/1‑35
        CTGTGCCGGGTAGCGCACAATCGATAGGCAGGGTT                                >  1:4869064/1‑35
        CTGTGCCGGGTAGCGCACAATCGATAGGCAGGGTT                                >  1:18615384/1‑35
        CTGTGCCGGGTAGCGCACAATCGATAGGCAGGGTT                                >  1:1181966/1‑35
        CTGTGCCGGGTAGCGCACAATCGATAGGCAGGGTT                                >  1:288221/1‑35
         TGTGCCGGGTAGCGCACAATCGATAGGCAGGGTTT                               >  1:713771/1‑35
         TGTGCCGGGTAGCGCACAATCGATAGGCAGGGTTT                               >  1:11098547/1‑35
         TGTGCCGGGTAGCGCACAATCGATAGGCAGGGTTT                               >  1:3633388/1‑35
          GTGCCGGGTAGCGCACAATCGATAGGCAGGGTTTT                              >  1:1201122/1‑35
          GTGCCGGGTAGCGCACAATCGATAGGCAGGGTTTT                              >  1:15037798/1‑35
           TGCCGGGTAGCGCACAATCGATAGGCAGGTTTTTT                             >  1:6613920/1‑35
           TGCCGGGTAGCGCACAATCGATAGGCAGGGTTTTT                             >  1:9423415/1‑35
            GCCGGGTAGCGCACAATCGATAGGCAGGGTTTTTT                            >  1:2873065/1‑35
            GCCGGGTAGCGCACAATCGATAGGCAGGGTTTTTT                            >  1:7478569/1‑35
            GCCGGGTAGCGCACAATCGATAGGCAGGGTTTTTT                            >  1:16799864/1‑35
             CCGGGTAGCGCACAATCGATAGGCAGGGTTTTTTA                           >  1:4856770/1‑35
              CGGGTAGCGCACAATCGATAGGCAGGGTTTCTTAT                          >  1:18057451/1‑35
               GGGTAGCGCACAATCGATAGGCAGGTTTTTTTATg                         >  1:10160833/1‑34
               GGGTAGCGCACAATCGATAGGCAGGGTTTTTTttt                         >  1:6828270/1‑32
                GGTAGCGCACAATCGATAGGCAGGGTTTTTTATgg                        >  1:16829145/1‑33
                                  GGCAGGGTTTTTTATATCTGTAGATCATCATAATC      <  1:11538025/35‑1
                                  GGCAGGGTTTTTTATATCTGTAGATCATCATAATC      <  1:15567116/35‑1
                                   GCAGGGTTTTTTATATCTGTAGATCATCATAATCC     <  1:9650920/35‑1
                                   GCAGGGTTTTTTATATCTGTAGATCATCATAATCC     <  1:12556240/35‑1
                                   GCAGGGTTTTTTATATCTGTAGATCATCATAATCC     >  1:16550907/1‑35
                                     AGGGTTTTTTATATCTGTAGATCATCATAATCCAT   <  1:3532442/35‑1
                                     AGGGTTTTTTATATCTGTAGATCATCATAATCCAT   >  1:8292859/1‑35
                                     AGGGTTTTTTATATCTGTAGATCATCATAATCCAT   <  1:13161518/35‑1
                                     AGGGTTTTTTATATCTGTAGATCATCATAATCCAT   <  1:14612537/35‑1
                                      GGGTTTTTTATATCTGTAGATCATCATAATCCATA  <  1:11014321/35‑1
                                                                         
AACCCAACCTGTGCCGGGTAGCGCACAATCGATAGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2389899‑2389861
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagGGTTTTTTATATCTGTAGATCATCATAATCCATA  <  REL606/2877079‑2877046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.