New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 519489 =96 (0.930)12 (0.160) 3/36 NT 16.6% coding (644/1668 nt) fdrA membrane protein FdrA
?REL606 1815514 = 49 (0.640)coding (1030/1491 nt) ynjC fused transporter subunits of ABC superfamily: membrane components

Only 100 of 179 total aligned reads displayed.

ACCGGGATTCAGGAGCTGTGCTCACAGATTGCGCTGGCAGGGGAGGGAATTACTCACGCGATTGGCCTT  >  REL606/519455‑519523
                                  |                                   
gccatagcgccagcgtgtactggcccgccaccagt                                     <  1:5089823‑M1/1‑1 (MQ=255)
gccatagcgccagcgtgtactggcccgccaccagt                                     <  1:7658618‑M1/1‑1 (MQ=255)
aCCGGGATTCAGGAGCTGTGCTCACAGATTGCGCt                                     >  1:7268692/1‑35 (MQ=255)
aCCGGGATTCAGGAGCTGTGCTCACAGATTGCGCt                                     >  1:15859345/1‑35 (MQ=255)
 ccatagcgccagcgtgtactggtccgccaccagTg                                    <  1:538586‑M1/2‑1 (MQ=255)
 ccatagcgccagcgtgtactggcccgccaccagTg                                    <  1:6209626‑M1/2‑1 (MQ=255)
 ccGGGATTCAGGAGCTGTGCTCACAGATTGCGCTg                                    >  1:16548815/1‑35 (MQ=255)
  catagcgccagcgtgtactggcccgccaccagTgg                                   <  1:14336194‑M1/3‑1 (MQ=255)
   gggATTCAGGAGCTGTGCTCACAGATTGCGCTGGc                                  <  1:6469081/35‑1 (MQ=255)
   gggATTCAGGAGCTGTGCTCACAGATTGCGCTGGc                                  <  1:19988502/35‑1 (MQ=255)
    tagcgccagcgtgtactggcccgccaccagtgaga                                 <  1:8522403‑M1/5‑4 (MQ=255)
    ggATTCAGGAGCTGTGCTCACATATTGCGCTGGCa                                 >  1:17708190/1‑35 (MQ=255)
    ggATTCAGGAGCTGTGCTCACATATTGCGCTGGCa                                 >  1:5513403/1‑35 (MQ=255)
    ggATTCAGGAGCTGTGCTCACAGATTGCGCTGGCa                                 >  1:3075499/1‑35 (MQ=255)
    ggATTCAGGAGCTGTGCTCACAGATTGCGCTGGCa                                 >  1:9179391/1‑35 (MQ=255)
    ggATTCAGGAGCTGTGCTCACAGATTGCGCTGGCa                                 >  1:20091435/1‑35 (MQ=255)
     gATTCAGGAGCTGTGCTCACAGATTGGTCTGGccg                                >  1:8036993/1‑33 (MQ=25)
     gATTCAGGAGCTGTGCTCACAGATTGCGCTGGCAg                               >  1:13382635/1‑35 (MQ=255)
     gATTCAGGAGCTGTGCTCACAGATTGCGCTGGCAg                               <  1:15541532/35‑1 (MQ=255)
     gATTCAGGAGCTGTGCTCACAGATTGCGCTGGCAg                               <  1:576968/35‑1 (MQ=255)
     gATTCAGGAGCTGTGCTCACAGATTGCGCTGGCAg                               >  1:20522706/1‑35 (MQ=255)
     agcgccagcgtgtactggcccgccaccagTGGCAg                               <  1:7553831‑M1/6‑1 (MQ=255)
     agcgccagcgtgtactgccccgccaccagTGGCAg                               >  1:16334997‑M1/30‑35 (MQ=255)
      aTTCAGGAGCTGTGCTCACAGATTGCGCTGGCAgg                              <  1:14521037/35‑1 (MQ=255)
      aTTCAGGAGCTGTGCTCACAGATTGCGCTGGCAgg                              >  1:13557201/1‑35 (MQ=255)
       ttCAGGAGCTGTGCTCACAGATTGCGCTGGCAggg                             <  1:14714028/35‑1 (MQ=255)
       ttCAGGAGCTGTGCTCACAGATTGCGCTGGCAggg                             <  1:9351129/35‑1 (MQ=255)
       cgccagcgtgtactggcccgccaccagTGGCAggg                             <  1:11866047‑M1/8‑1 (MQ=255)
       cgccagcgtgtactggcccgccaccagTGGCAggg                             <  1:10500668‑M1/8‑1 (MQ=255)
        tCAGGAGCTGTGCTCACAGATTGCGCTTGCAgggg                            >  1:4372008/1‑35 (MQ=255)
        tCAGGAGCTGTGCTCACAGATTGCGCTGGCAgggg                            <  1:13060406/35‑1 (MQ=255)
         cAGGAGCTGTGCTCACAGATTGCGCTGGCAggggg                           >  1:14056428/1‑34 (MQ=255)
         cAGGAGCTGTGCTCACAGATTGCGCTGGCAGggga                           >  1:3923882/1‑35 (MQ=255)
         cAGGAGCTGTGCTCACAGATTGCGCTGGCAGggga                           >  1:4451449/1‑35 (MQ=255)
         cAGGAGCTGTGCTCACAGATTGCGCTGGCAGggga                           <  1:4479478/35‑1 (MQ=255)
         cAGGAGCTGTGCTCACAGATTGCGCTGGCAGggga                           <  1:8443663/35‑1 (MQ=255)
          cagcgtgtactggcccgccaccagTGGcaggggcg                          <  1:1027255‑M1/11‑3 (MQ=255)
          cagcgtgtactggcccgccaccagTGGcaggggcg                          <  1:5344929‑M1/11‑3 (MQ=255)
          aGGAGCTGTGCTCACAGATTGCGCTGGCAGgggag                          <  1:15697413/35‑1 (MQ=255)
           ggAGCTGTGCTCACAGATTGCGCTGGCAGgggagg                         >  1:7771955/1‑35 (MQ=255)
           ggAGCTGTGCTCACAGATTGCGCTGGCAGgggagg                         <  1:17464166/35‑1 (MQ=255)
            gcgtgtactggcccgccaccagTGGCAGggggggg                        <  1:933670‑M1/13‑1 (MQ=255)
            gcgtgtactggcccgccaccagTGGCAGgggcggg                        <  1:13665456‑M1/13‑1 (MQ=255)
            gcgtgtactggcccgccaccagTGGCAGgggcggg                        <  1:19340800‑M1/13‑1 (MQ=255)
            gcgtgtactggcccgccaccagTGGCAGgggcggg                        <  1:11872984‑M1/13‑1 (MQ=255)
            gcgtgtactggcccgccaccagTGGCAGgggaggg                        <  1:17949951‑M1/13‑1 (MQ=255)
            gcgtgtactggcccgccaccagTGGCAGgggaggg                        <  1:4864983‑M1/13‑1 (MQ=255)
            gcgtgtactggcccgccaccagTGGCAGggcaggg                        <  1:5324515‑M1/13‑1 (MQ=255)
            gAGCTGTGCTCACAGATTGCGCTGGCAGgggaggg                        <  1:5258217/35‑1 (MQ=255)
            gAGCTGTGCTCACAGATTGCGCTGGCAGgggaggg                        >  1:13336196/1‑35 (MQ=255)
             cgtgtactggcccgccaccagTGGCAGgggcggga                       <  1:14122665‑M1/14‑1 (MQ=255)
             cgtgtactggcccgccaccagTGGCAGgggaggga                       <  1:1683536‑M1/14‑1 (MQ=255)
             aGCTGTGCTCACAGATTGCGCTGGCAGgggggggg                       >  1:95811/1‑34 (MQ=255)
             aGCTGTGCTCACAGATTGCGCTGGCAGgggagggg                       >  1:19923880/1‑34 (MQ=255)
             aGCTGTGCTCACAGATTGCGCTGGCAGgggaggga                       >  1:9653275/1‑35 (MQ=255)
              gCTGTGCTCACAGATTGCGCTGGCAGGGGAGGGaa                      <  1:15035302/35‑1 (MQ=255)
               cTGTGCTCACAGATTGCGCTGGCAGGGGAGGGCAt                     >  1:12960425/1‑35 (MQ=255)
                tgtgCTCACAGATTGCGCTGGCAGGGGAGGGGAtt                    >  1:6566044/1‑35 (MQ=255)
                tgtgCTCACAGATTGCGCTGGCAGGGGAGGGAAtt                    <  1:2755184/35‑1 (MQ=255)
                tgtgCTCACAGATTGCGCTGGCAGGGGAGGGAAtt                    <  1:4893744/35‑1 (MQ=255)
                tgtgCTCACAGATTGCGCTGGCAGGGGAGGGAAtt                    >  1:11916631/1‑35 (MQ=255)
                 gtgCTCACAGATTGCGCTGGCAGGGGAGGGAATTa                   >  1:7090290/1‑35 (MQ=255)
                  tgCTCACAGATTGCGCTGGCAGGGGGGGGAATTAc                  >  1:2969295/1‑35 (MQ=255)
                  tgCTCACAGATTGCGCTGGCAGGGGAGGGAATTAc                  <  1:4244929/35‑1 (MQ=255)
                   gCTCACAGATTGCGCTGGCAGGGGAGGGAATTACt                 >  1:19391737/1‑35 (MQ=255)
                   gCTCACAGATTGCGCTGGCAGGGGAGGGAATTACt                 >  1:6319769/1‑35 (MQ=255)
                    cTCACAGATTGCGCTGGCAGGGGAGGGAATTACTc                >  1:15274729/1‑35 (MQ=255)
                    cTCACAGATTGCGCTGGCAGGGGAGGGAATTACTc                <  1:2321897/35‑1 (MQ=255)
                     tCACAGATTGCGCTGGCAGGGGAGGGAATTACTCa               <  1:8017050/35‑1 (MQ=255)
                     tCACAGATTGCGCTGGCAGGGGAGGGAATTACTCa               <  1:931168/35‑1 (MQ=255)
                      cacaGATTGCGCTGGCAGGGGGAGGGAATTACTcg               <  1:16681937/35‑2 (MQ=37)
                      cacaGATTGCGCTGGCAGGGGAGGGAATTACTCAc              >  1:20375537/1‑35 (MQ=255)
                      cacaGATTGCGCTGGCAGGGGAGGGAATTACTCAc              >  1:19125834/1‑35 (MQ=255)
                      cacaGATTGCGCTGGCAGGGGAGGGAATTACTCAc              <  1:18217484/35‑1 (MQ=255)
                       acaGATTGCGCTGGCAGGGGAGTGAATTACTCAcg             >  1:3108048/1‑35 (MQ=255)
                       acaGATTGCGCTGGCAGGGGAGGGAATTACTCAcg             <  1:11406843/35‑1 (MQ=255)
                       acaGATTGCGCTGGCAGGGGAGGGAATTACTCAcg             <  1:3350793/35‑1 (MQ=255)
                        caGATTGCGCTGGCAGGGGAGGGAATTACTCAcgc            <  1:4547117/35‑1 (MQ=255)
                        caGATTGCGCTGGCAGGGGAGGGAATTACTCAcgc            >  1:2411343/1‑35 (MQ=255)
                        caGATTGCGCTGGCAGGGGAGGGAATTACTCAcgc            <  1:12722620/35‑1 (MQ=255)
                        caGATTGCGCTGGCAGGGGAGGGAATTACTCAcgc            >  1:16255044/1‑35 (MQ=255)
                         aGATTGCGCTGGCAGGGGAGGGAATTACTCAcgcg           <  1:12064762/35‑1 (MQ=255)
                         aGATTGCGCTGGCAGGGGAGGGAATTACTCAcgcg           >  1:1787182/1‑35 (MQ=255)
                          gATTGCGCTGGCAGGGGAGGGAATTACTCACGCGa          >  1:10064014/1‑35 (MQ=255)
                           aTTGCGCTGGCAGGGGAGGGAATTACTCACGCGAt         <  1:3406847/35‑1 (MQ=255)
                            ttGCGCTGGCAGGGGAGGGAATTACTCACGCGAtt        <  1:7576920/35‑1 (MQ=255)
                            ttGCGCTGGCAGGGGAGGGAATTACTCACGCGAtt        <  1:13379846/35‑1 (MQ=255)
                            ttGCGCTGGCAGGGGAGGGAATTACTCACGCGAtt        >  1:12200562/1‑35 (MQ=255)
                              gctcTGGCAGGGGAGGGAATTACTCACGCGATTgg      <  1:1383149/32‑1 (MQ=255)
                              gcgcTGGCAGGGGAGGGAATTACTCACGCGATTgg      <  1:6743331/35‑1 (MQ=255)
                              gcgcTGGCAGGGGAGGGAATTACTCACGCGATTgg      >  1:12883657/1‑35 (MQ=255)
                                 cTGGCAGGGGAGGGAATTACTCACGCGATTTGCCt   >  1:8941516/1‑35 (MQ=255)
                                 cTGGCAGGGGAGGGAATTACTCACGCGATTGGCCt   >  1:19036539/1‑35 (MQ=255)
                                 cTGGCAGGGGAGGGAATTACTCACGCGATTGGCCt   >  1:16961419/1‑35 (MQ=255)
                                 cTGGCAGGGGAGGGAATTACTCACGCGATTGGCCt   >  1:6595630/1‑35 (MQ=255)
                                 cTGGCAGGGGAGGGAATTACTCACGCGATTGGCCt   <  1:19586308/35‑1 (MQ=255)
                                 cTGGCAGGGGAGGGAATTACTCACGCGATTGGCCt   >  1:485619/1‑35 (MQ=255)
                                  TGGCAGGGGAGGGAATTACTCACGCGATTGGCCtt  >  1:6870233‑M1/1‑35 (MQ=255)
                                  TGGCAGGGGAGGGAATTACTCACGCGATTGGCCtt  >  1:15297968‑M1/1‑35 (MQ=255)
                                  TGGCAGGGGAGGGAATTACTCACGCGATTGGCCtt  >  1:14865770‑M1/1‑35 (MQ=255)
                                  |                                   
ACCGGGATTCAGGAGCTGTGCTCACAGATTGCGCTGGCAGGGGAGGGAATTACTCACGCGATTGGCCTT  >  REL606/519455‑519523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.