New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1076256103 (1.000)12 (0.160) 3/36 NT 15.1% coding (711/2547 nt) torA trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit
?REL606 3800450 = 58 (0.750)intergenic (+10/+31) ECB_03545/yicM hypothetical protein/predicted transporter

CATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1076217‑1076256
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcaaCAACTACTGACCAACGCTTCTTTACCTGATATCA  >  REL606/3800450‑3800483
                                                                          
CATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACC                                         <  1:568114/35‑1
CATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACC                                         >  1:19646362/1‑35
CATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACC                                         <  1:17706637/35‑1
CATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACC                                         <  1:6442562/35‑1
CATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACC                                         <  1:17549822/35‑1
 ATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACCA                                        <  1:1088222/35‑1
 ATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACCA                                        >  1:1412747/1‑35
 ATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACCA                                        >  1:9257888/1‑35
 ATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACCA                                        <  1:16990276/35‑1
 ATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACCA                                        <  1:2766282/35‑1
 ATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACCA                                        <  1:7388927/35‑1
 ATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACCA                                        >  1:13436729/1‑35
  TTGTGCTGTGGGGCTCCGATTTGCTGAAAAACCAG                                       >  1:17703468/1‑35
  TTGTGCTGTGGGGCTCCGATTTGCTGAAAAACCAG                                       <  1:591571/35‑1
  TTGTGCTGTGGGGCTCCGATTTGCTGAAAAACCAG                                       <  1:11545534/35‑1
  TTGTGCTGTGGGGCTCCGATTTGCTGAAAAACCAG                                       <  1:9673189/35‑1
   TGTGCTGTGGGGCTCCGATTTGCTGAAAAACCAGC                                      <  1:3597847/35‑1
   TGTGCTGTGGGGCTCCGATTTGCTGAAAAACCAGC                                      >  1:15021866/1‑35
    GTGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCA                                     <  1:18780431/35‑1
    GTGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCA                                     <  1:18785736/35‑1
    GTGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCA                                     >  1:15104189/1‑35
    GTGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCA                                     <  1:14993049/35‑1
     gGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    >  1:14474466/2‑35
     atCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    <  1:11246882/33‑1
     TGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    >  1:9607246/1‑35
     TGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    <  1:20007839/35‑1
     TGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    >  1:16329841/1‑35
     TGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    >  1:2789748/1‑35
     TGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    >  1:5942342/1‑35
     TGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    >  1:15421570/1‑35
     TGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    >  1:14898124/1‑35
                       ataTGAAAAACCAGCAACAACTACTGACCAACGCT                  <  1:8033077/32‑1
                       ataTGAAAAACCAGCAACAACTACTGACCAACGCT                  <  1:10950425/32‑1
                         aTGAAAAACCAGCAACAACTACTGACCAACGCTTC                <  1:3602751/34‑1
                          tggAAAACCAGCAACAACTACTGACCAACGCTTCT               <  1:16499135/32‑1
                          TGAAAAACCAGCAACAACTACTGACCAACGCTTCT               <  1:7512496/35‑1
                          TGAAAAACCAGCAACAACTACTGACCAACGCTTCT               <  1:14626997/35‑1
                           gtAAAACCAGCAACAACTACTGACCAACGCTTCTT              <  1:1399202/33‑1
                           aAAAAACCAGCAACAACTACTGACCAACGCTTCTT              <  1:18748438/34‑1
                           aAAAAACCAGCAACAACTACTGACCAACGCTTCTT              <  1:15199926/34‑1
                           aAAAAACCAGCAACAACTACTGACCAACGCTTATT              <  1:18239126/34‑1
                           GAAAAACCAGCAACAACTACTGACCAACGCTTCTT              <  1:3723104/35‑1
                            AAAGACCAGCAACAACTACTGACCAACGCTTCTTT             <  1:190103/35‑1
                            AAAAACCAGCAACAACTACTGACCAACGCTTCTTT             <  1:15316934/35‑1
                            AAAAACCAGCAACAACTACTGACCAACGCTTCTTT             <  1:17586635/35‑1
                               AACCAGCAACAACTACTGACCAACGCTTCTTTACC          <  1:714720/35‑1
                                ACCAGCAACAACTACTGACCAAGGCTTCTTTACCT         <  1:1716449/35‑1
                                ACCAGCAACAACTACTGACCAACGCTTCTTTACCT         <  1:2118805/35‑1
                                ACCAGCAACAACTACTGACCAACGCTTCTTTACCT         <  1:16958685/35‑1
                                ACCAGCAACAACTACTGACCAACGCTTCTTTACCT         <  1:10319329/35‑1
                                ACCAGCAACAACTACTGACCAACGCTTCTTTACCT         <  1:13382962/35‑1
                                 CCAGCAACAACTACTGACCAACGCTTCTTTACCTG        <  1:18230663/35‑1
                                  CAGCAACAACTCCTGACCAACGCTTCTTTACCTGA       <  1:7106111/35‑1
                                  CAGCAACAACTACTGACCAACGCTTCTTTACCTGA       >  1:18408580/1‑35
                                  CAGCAACAACTACTGACCAACGCTTCTTTACCTGA       <  1:17499727/35‑1
                                  CAGCAACAACTACTGACCAACGCTTCTTTACCTGA       <  1:16860031/35‑1
                                  CAGCAACAACTACTGACCAACGCTTCTTTACCTGA       <  1:12195869/35‑1
                                  CAGCAACAACTACTGACCAACGCTTCTTTACCTGA       <  1:14228615/35‑1
                                   AGCAACAACTACTGACCAACGCTTCTTTACCTGAT      <  1:7309926/35‑1
                                   AGCAACAACTACTGACCAACGCTTCTTTACCTGAT      >  1:5753372/1‑35
                                   AGCAACAACTACTGACCAACGCTTCTTTACCTGAT      <  1:905894/35‑1
                                   AGCAACAACTACTGACCAACGCTTCTTTACCTGAT      <  1:2894791/35‑1
                                   AGCAACAACTACTGACCAACGCTTCTTTACCTGAT      >  1:16243360/1‑35
                                   AGCAACAACTACTGACCAACGCTTCTTTACCTGAT      <  1:16317319/35‑1
                                   AGCAACAACTACTGACCAACGCTTCTTTACCTGAT      >  1:16473844/1‑35
                                   AGCAACAACTACTGACCAACGCTTCTTTACCTGAT      >  1:16477803/1‑35
                                    GCAACAACTACTGACCAACGCTTCTTTACCTGATA     <  1:16195610/35‑1
                                    GCAACAACTACTGACCAACGCTTCTTTACCTGATA     <  1:15642336/35‑1
                                    GCAACAACTACTGACCAACGCTTCTTTACCTGATA     <  1:857053/35‑1
                                    GCAACAACTACTGACCAACGCTTCTTTACCTGATA     <  1:8255898/35‑1
                                    GCAACAACTACTGACCAACGCTTCTTTACCTGATA     >  1:12604818/1‑35
                                    GCAACAACTACTGACCAACGCTTCTTTACCTGATA     >  1:12249143/1‑35
                                     CAACAACTACTGACCAACGCTTCTTTACCTGATAT    >  1:16144885/1‑35
                                     CAACAACTACTGACCAACGCTTCTTTACCTGATAT    <  1:16461437/35‑1
                                     CAACAACTACTGACCAACGCTTCTTTACCTGATAT    >  1:16736750/1‑35
                                      AACAACTACTGACCAACGCTTCTTTACCTGATATC   <  1:8964677/35‑1
                                      AACAACTACTGACCAACGCTTCTTTACCTGATATC   >  1:11900624/1‑35
                                      AACAACTACTGACCAACGCTTCTTTACCTGATATC   <  1:9827592/35‑1
                                      AACAACTACTGACCAACGCTTCTTTACCTGATATC   <  1:12232466/35‑1
                                      AACAACTACTGACCAACGCTTCTTTACCTGATATC   <  1:1399582/35‑1
                                      AACAACTACTGACCAACGCTTCTTTACCTGATATC   >  1:5314974/1‑35
                                      AACAACTACTGACCAACGCTTCTTTACCTGATATC   >  1:3701924/1‑35
                                      AACAACTACTGACCAACGCTTCTTTACCTGATATC   <  1:20058486/35‑1
                                      AACAACTACTGACCAACGCTTCTTTACCTGATATC   <  1:19166230/35‑1
                                      AACAACTACTGACCAACGCTTCTTTACCTGATATC   >  1:1845978/1‑35
                                      AACAACTAATGACCAACGCTTCTTTACCTGATATC   <  1:11770661/35‑1
                                       ACAACTACTGACCAACGCTTCTTTACCTGATATCA  <  1:12954804/35‑1
                                       ACAACTACTGACCAACGCTTCTTTACCTGATATCA  <  1:3163043/35‑1
                                       ACAACTACTGACCAACGCTTCTTTACCTGATATCA  <  1:9743474/35‑1
                                                                          
CATTGTGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1076217‑1076256
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcaaCAACTACTGACCAACGCTTCTTTACCTGATATCA  >  REL606/3800450‑3800483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.