New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 413197 =80 (0.780)16 (0.210) 3/36 NT 19.4% coding (93/492 nt) yajQ nucleotide‑binding protein
?REL606 3219746 = 73 (0.950)coding (344/477 nt) agaB N‑acetylgalactosamine‑specific enzyme IIB component of PTS

GGCGTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/413236‑413197
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggaagGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCGA  >  REL606/3219746‑3219779
                                                                          
GGCGTCGTTCAGCTCAAATGAGGCTTCAACGTTAC                                         <  1:10009952/35‑1
GGCGTCGTTCAGCTCAAATGAGGCTTCAACGTTAC                                         <  1:6828322/35‑1
GGCGTCGTTCAGCTCAAATGAGGCTTCAACGTTAC                                         >  1:20377742/1‑35
 GCGTCGTTCAGCTCAAATGAGGCTTCAACGTTACG                                        >  1:12515849/1‑35
 GCGTCGTTCAGCTCAAATGAGGCTTCAACGTTACG                                        >  1:19230667/1‑35
 GCGTCGTTCAGCTCAAATGAGGCTTCAACGTTACG                                        <  1:11264928/35‑1
  CGTCGTTCAGCTCAAATGAGGCTTCAACGTTACGG                                       <  1:13860242/35‑1
  CGTCGTTCAGCTCAAATGAGGCTTCAACGTTACGG                                       <  1:17656966/35‑1
  CGTCGTTCAGCTCAAATGAGGCTTCAACGTTACGG                                       <  1:2549730/35‑1
   GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGg                                      >  1:728056/1‑34
   GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA                                      >  1:20441014/1‑35
   GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA                                      >  1:19631072/1‑35
   GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA                                      >  1:5503895/1‑35
   GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA                                      >  1:18813106/1‑35
   GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA                                      >  1:6236883/1‑35
   GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA                                      >  1:18595208/1‑35
   GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA                                      >  1:18139695/1‑35
   GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA                                      >  1:6808967/1‑35
   GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA                                      >  1:17378990/1‑35
   GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA                                      <  1:13981464/35‑1
   GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA                                      >  1:11693040/1‑35
   GTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGA                                      <  1:12877836/35‑1
    TCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAA                                     >  1:15275241/1‑35
    TCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAA                                     <  1:3603280/35‑1
    TCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAA                                     <  1:4079767/35‑1
    TCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAA                                     >  1:17190156/1‑35
    TCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAA                                     >  1:6840031/1‑35
     CGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAG                                    <  1:19399977/35‑1
     CGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAG                                    <  1:11662839/35‑1
     CGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAG                                    <  1:19717935/35‑1
     CGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAG                                    >  1:15307153/1‑35
      GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG                                   >  1:1955612/1‑35
      GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG                                   >  1:5347550/1‑35
      GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG                                   >  1:12547257/1‑35
      GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG                                   >  1:17425403/1‑35
      GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG                                   >  1:930617/1‑35
      GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG                                   >  1:8469359/1‑35
      GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG                                   >  1:8656915/1‑35
      GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG                                   >  1:5766279/1‑35
      GTTCAGCTCAAATGAGGCTTCAACGTTACGGAAGG                                   >  1:1375836/1‑35
       TTCAGCTCAAATGAGGCTTCAACGTTACGGAAGGc                                  >  1:9198114/1‑34
       TTCAGCTCAAATGAGGCTTCAACGTTACGGAAGGG                                  >  1:7434785/1‑35
       TTCAGCTCAAATGAGGCTTCAACGTTACGGAAGGG                                  >  1:20351795/1‑35
         CAGCTCAAATGAGGCTTCAACGTTACGGAAGGcga                                >  1:15843176/1‑32
         CAGCTCAAATGAGGCTTCAACGTTACGGAAGGGca                                >  1:14799893/1‑33
         CAGCTCAAATGAGGCTTCAACGTTACGGAAGGGAA                                >  1:2203118/1‑35
          AGCTCAAATGAGGCTTCAACGTTACGGAAGGGCAA                               >  1:15950669/1‑35
          AGCTCAAATGAGGCTTCAACGTTACGGAAGGGAAA                               >  1:8046914/1‑35
          AGCTCAAATGAGGCTTCAACGTTACGGAAGGCAAA                               >  1:11051676/1‑35
           GCTCAAATGAGGCTTCAACGTTACGGAAGGGGAAA                              >  1:14642558/1‑35
           GCTCAAATGAGGCTTCAACGTTACGGAAGGGAAAA                              >  1:10720094/1‑35
           GCTCAAATGAGGCTTCAACGTTACGGAAGGGAAAA                              >  1:15468086/1‑35
            CTCAAATGAGGCTTCAACGTTACGGAAGGGGAAAc                             >  1:20187243/1‑34
            CTCAAATGAGGCTTCAACGTTACGGAAGGGCAAAA                             >  1:10848508/1‑35
            CTCAAATGAGGCTTCAACGTTACGGAAGGGCAAAA                             >  1:15205848/1‑35
            CTCAAATGAGGCTTCAACGTTACGGAAGGGAAAAc                             >  1:5165975/1‑34
            CTCAAATGAGGCTTCAACGTTACGGAAGGGAAAAA                             >  1:6795188/1‑35
            CTCAAATGAGGCTTCAACGTTACGGAAGGGAAAAA                             >  1:10504521/1‑35
             TCAAATGAGGCTTCAACGTTACGGAAGGGGAAAAa                            >  1:18841827/1‑34
             TCAAATGAGGCTTCAACGTTACGGAAGGGAAAAAc                            >  1:12516152/1‑34
             TCAAATGAGGCTTCAACGTTACGGAAGGGAAAAAa                            >  1:3294799/1‑34
             TCAAATGAGGCTTCAACGTTACGGAAGGGAAAAAG                            >  1:1150538/1‑35
              CAAATGAGGCTTCAACGTTACGGAAGGGAAAAcag                           >  1:2117581/1‑32
               AAATGAGGCTTCAACGTTACGGAAGGGAAAAAagg                          >  1:16901973/1‑32
               AAATGAGGCTTCAACGTTACGGAAGGGAAAAAaag                          >  1:3005434/1‑32
                                  CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT       <  1:5916252/35‑1
                                  CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT       >  1:7285139/1‑35
                                  CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT       <  1:4743684/35‑1
                                  CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT       <  1:4338940/35‑1
                                  CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT       >  1:8783138/1‑35
                                  CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT       >  1:11468339/1‑35
                                  CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT       >  1:19202480/1‑35
                                  CGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTAT       >  1:11761956/1‑35
                                   GGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTATG      <  1:13827298/35‑1
                                    GAAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGT     <  1:3873023/35‑1
                                    GAAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGT     >  1:7321634/1‑35
                                    GAAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGT     >  1:20398023/1‑35
                                    GAAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGT     <  1:17314860/35‑1
                                     AAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTC    <  1:8389287/35‑1
                                     AAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTC    <  1:9767783/35‑1
                                     AAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTC    >  1:2566234/1‑35
                                      AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG   <  1:10888011/35‑1
                                      AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG   >  1:4160364/1‑35
                                      AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG   <  1:7774996/35‑1
                                      AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG   <  1:3694095/35‑1
                                      AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG   <  1:3592286/35‑1
                                      AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG   >  1:11156731/1‑35
                                      AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG   >  1:2158770/1‑35
                                      AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG   <  1:914101/35‑1
                                      AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG   >  1:13678101/1‑35
                                      AGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCG   >  1:16182304/1‑35
                                       GGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCGA  >  1:8587758/1‑35
                                       GGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCGA  >  1:15299185/1‑35
                                                                          
GGCGTCGTTCAGCTCAAATGAGGCTTCAACGTTACGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/413236‑413197
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggaagGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCGA  >  REL606/3219746‑3219779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.