New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1075765 | 68 (0.660) | 14 (0.170) | 4/38 | NT | 15.8% | coding (220/2547 nt) | torA | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
? | REL606 | = 3523984 | 95 (1.170) | coding (128/714 nt) | livF | leucine/isoleucine/valine transporter subunit |
Only 100 of 147 total aligned reads displayed.
CCGCGCGACGGTGAAGGATGGTCGCTTTGTGGC‑GGCAAAACCGTTCGAACTGGATAAATATCCGTCGAA > REL606/1075731‑1075799 | ccGCGCGACGGTGAAGGATGGTCGCTTTGTGGC‑GG < 1:10988856‑M1/35‑1 (MQ=255) cgcgcgACGGTGAAGGATGGTCGCTTTGTggc‑ggc < 1:17222557/35‑1 (MQ=255) cgcgcgACGGTGAAGGATGGTCGCTTTGTggc‑ggc < 1:13488639/35‑1 (MQ=255) cgcgcgACGGTGAAGGATGGTCGCTTTGTGGC‑GGg > 1:800654‑M1/1‑34 (MQ=255) gcgcgACGGTGAAGGATGGTCGCTTTGTGGC‑GGCa < 1:4429346/35‑1 (MQ=255) gcgcgACGGTGAAGGATGGTCGCTTTGTGGC‑GGCa < 1:3118640/35‑1 (MQ=255) cgcgACGGTGAAGGATGGTCGCTTTGTGGC‑GGCaa < 1:15282646/35‑1 (MQ=255) gcgACGGTGAAGGATGGTCGCTTTGTGGC‑GGgcgg > 1:6846881‑M1/1‑31 (MQ=255) gcgACGGTGAAGGATGGTCGCTTTGTGGC‑GGCaaa < 1:9826350/35‑1 (MQ=255) cgACGGTGAAGGATGGTCGCTTTGTGGC‑GGCaaaa < 1:8882509/35‑1 (MQ=255) cgACGGTGAAGGATGGTCGCTTTGTGGC‑GGCaaaa < 1:12187908/35‑1 (MQ=255) gACGGTGAAGGATGGTCGCTTTGTGGC‑GGgggaac > 1:8728639‑M1/1‑29 (MQ=255) gACGGTGAAGGATGGTCGCTTTGTGGC‑GGgggaac > 1:2237093‑M1/1‑29 (MQ=255) gACGGTGAAGGATGGTCGCTTTGTGGC‑GGgggaaa > 1:904461‑M1/1‑29 (MQ=255) gACGGTGAAGGATGGTCGCTTTGTGGC‑GGggaaaa > 1:11190354‑M1/1‑29 (MQ=255) gACGGTGAAGGATGGTCGCTTTGTGGC‑GGCAAAAc < 1:11969059/35‑1 (MQ=255) gACGGTGAAGGATGGTCGCTTTGTGGC‑GGCAAAAc < 1:18586773/35‑1 (MQ=255) aCGGTGAAGGATGGTCGCTTTGTGGC‑GGgggaaaa > 1:753460‑M1/1‑28 (MQ=255) aCGGTGAAGGATGGTCGCTTTGTGGC‑GGggaaacc > 1:13771578‑M1/1‑28 (MQ=255) cGGTGAAGGATGGTCGCTTTGTGGC‑GGggaaacag > 1:7817771‑M1/1‑27 (MQ=255) cGGTGAAGGATGGTCGCTTTGTGGC‑GGggaaaacg > 1:15327233‑M1/1‑27 (MQ=255) cGGTGAAGGATGGTCGCTTTGTGGC‑GGggaaaacg > 1:8781299‑M1/1‑27 (MQ=255) cGGTGAAGGATGGTCGCTTTGTGGC‑GGcgaaaacc > 1:14402930‑M1/1‑27 (MQ=255) cGGTGAAGGATGGTCGCTTTGTGGC‑GGCAAAACCg < 1:19609120/35‑1 (MQ=255) cGGTGAAGGATGGTCGCTTTGTGGC‑GGCAAAACCg < 1:20095471/35‑1 (MQ=255) cGGTGAAGGATGGTCGCTTTGTGGC‑GGCAAAACCg < 1:8015383/35‑1 (MQ=255) ggTGAAGGATGGTCGCTTTGTGGC‑GGggaaaacgg > 1:5167232‑M1/1‑26 (MQ=255) ggTGAAGGATGGTCGCTTTGTGGC‑GGgcaaaaccg > 1:5074228‑M1/1‑26 (MQ=255) ggTGAAGGATGGTCGCTTTGTGGC‑GGCAAAACCGt < 1:1748242/35‑1 (MQ=255) ggTGAAGGATGGTCGCTTTGTGGC‑GGCAAAACCGt < 1:3940711/35‑1 (MQ=255) gTGAAGGATGGTCGCTTTGTGGC‑GGggaaaaccgt > 1:5964022‑M1/1‑25 (MQ=255) gTGAAGGATGGTCGCTTTGTGGC‑GGggaaaaccct > 1:7988386‑M1/1‑25 (MQ=255) tGAAGGATGGTCGCTTTGTGGC‑GGGGAAACCGCTc > 1:14641498/1‑35 (MQ=21) tGAAGGATGGTCGCTTTGTGGC‑GGCAAAACCGTTc < 1:4315385/35‑1 (MQ=255) tGAAGGATGGTCGCTTTGTGGC‑GGCAAAACCGTTc < 1:15149811/35‑1 (MQ=255) tGAAGGATGGTCGCTTTGTGGC‑GGCAAAACCGTTc < 1:11550046/35‑1 (MQ=255) tGAAGGATGGTCGCTTTGTGGC‑GGCAAAACCGTTc < 1:9921369/35‑1 (MQ=255) gAAGGATGGTCGCTTTGTGGC‑GGGGAAAACGATCg > 1:13785118/1‑35 (MQ=16) gAAGGATGGTCGCTTTGTGGC‑GGCAAAACCGTTCg < 1:3491028/35‑1 (MQ=255) gAAGGATGGTCGCTTTGTGGC‑GGCAAAACCGTTCg < 1:19701750/35‑1 (MQ=255) gAAGGATGGTCGCTTTGTGGC‑GGCAAAACCGTTCg < 1:4704376/35‑1 (MQ=255) gAAGGATGGTCGCTTTGTGGC‑GGCAAAACCGTTCg < 1:6193902/35‑1 (MQ=255) aaGGATGGTCGCTTTGTGGC‑GGGGAAACGGTTcca > 1:6842906/1‑33 (MQ=21) ggATGGTCGCTTTGTGGCGGGGAAAACCGGTCGaa > 1:12404224/1‑35 (MQ=16) ggATGGTCGCTTTGTGGC‑GGCAAAACCGTTCGAAc < 1:10118426/35‑1 (MQ=255) gATGGTCGCTTTGTGGC‑GGGGAAACCCTTCGAACt > 1:6656746/1‑35 (MQ=25) gATGGTCGCTTTGTGGC‑GGCAAAACCGTTCGAACt < 1:18797217/35‑1 (MQ=255) gATGGTCGCTTTGTGGC‑GGCAAAACCGTTCGAACt < 1:1142341/35‑1 (MQ=255) gATGGTCGCATTGTGGC‑GGCAAAACCGTTCGAACt < 1:2120946/35‑1 (MQ=255) aTGGTCGCTTTGTGGC‑GGCAAAACCGTTCGAACTg < 1:3973253/35‑1 (MQ=255) aTGGTCGCTTTGTGGC‑GGCAAAACCGTTCGAACTg < 1:16108392/35‑1 (MQ=255) aTGGTCGCTTTGTGGC‑GGCAAAACCGTTCGAACTg < 1:6220002/35‑1 (MQ=255) aTGGTCGCTTTGTGGC‑GGCAAAACCGTTCGAACTg < 1:7220764/35‑1 (MQ=255) tGGTCGCTTTGTGGC‑GGCAAAACCGTTCGAACTgg < 1:20092099/35‑1 (MQ=255) ggTCGCTTTGTGGC‑GGCAAAACCGTTCGAACTGGa < 1:19921458/35‑1 (MQ=255) ggTCGCTTTGTGGC‑GGCAAAACCGTTCGAACTGGa < 1:2642326/35‑1 (MQ=255) tggCTTTGTGGC‑GGCAAAACCGTTCGAACTGGATa < 1:15040032/33‑1 (MQ=255) tCGCTTTGTGGC‑GGCAAAACCGTTCGAACTGGATa < 1:2067763/35‑1 (MQ=255) cGCTTTGTGGC‑GGCAAAACCGTTCGAACTGGATaa < 1:14240438/35‑1 (MQ=255) cGCTTTGTGGC‑GGCAAAACCGTTCGAACTGGATaa < 1:10256794/35‑1 (MQ=255) cGCTTTGTGGC‑GGCAAAACCGTTCGAACTGGATaa < 1:4947885/35‑1 (MQ=255) gCTTTGTGGC‑GGCAAAACCGTTCGAACTGGATaaa < 1:18909345/35‑1 (MQ=255) gCTTTGTGGC‑GGCAAAACCGTTCGAACTGGATaaa < 1:11793598/35‑1 (MQ=255) cTTTGTGGC‑GGCAAAACCGTTCGAACTGGATAAat < 1:18157930/35‑1 (MQ=255) cTTTGTGGC‑GGAAAAACCGTTCGAACTGGATAAat < 1:13652876/35‑1 (MQ=255) tttGTTGC‑GGCAAAACCGTTCGAACTGGATAAata > 1:4765202/1‑35 (MQ=255) tttGTGGC‑GGCAAAACCGTTCGAACTGGATAAata < 1:15581515/35‑1 (MQ=255) gtgGC‑GGCAAAACCGTTCGAACTGGATAAATATcc < 1:10764463/35‑1 (MQ=255) tgGC‑GGCAAAACCGTTCGAACTGGATAAATATCCg < 1:12643673/35‑1 (MQ=255) tgGC‑GGCAAAACCGTTCGAACTGGATAAATATCCg > 1:16810359/1‑35 (MQ=255) tgGC‑GGCAAAACCGTTCGAACTGGATAAATATCCg > 1:12108687/1‑35 (MQ=255) ggc‑ggcAAAACCGTTCGAACTGGATAAATATCCGt > 1:12312127/1‑35 (MQ=255) ggc‑ggcAAAACCGTTCGAACTGGATAAATATCCGt < 1:8851217/35‑1 (MQ=255) ggc‑ggcAAAACCGTTCGAACTGGATAAATATCCGt > 1:10300877/1‑35 (MQ=255) ggC‑GGggaaaaccaccttgcttggtacgttatgcg < 1:6543526‑M1/35‑31 (MQ=255) ggC‑GGggaaaaccaccttgcttggtacgttatgcg > 1:14384699‑M1/1‑5 (MQ=255) ggC‑GGggaaaaccaccttgcttggtacgttatgcg < 1:4974025‑M1/35‑31 (MQ=255) ggC‑GGggaaaaccaccttgcttggtacgttatgcg < 1:18294291‑M1/35‑31 (MQ=255) ggC‑GGggaaaaccaccttgcttggtacgttatgcg > 1:9651681‑M1/1‑5 (MQ=255) gc‑ggcAAAACCGTTCGAACTGGATAAATATCCGTc > 1:266425/1‑35 (MQ=255) gc‑ggcAAAACCGTTCGAACTGGATAAATATCCGTc > 1:5353284/1‑35 (MQ=255) gc‑ggcAAAACCGTTCGAACTGGATAAATATCCGTc < 1:2845917/35‑1 (MQ=255) gc‑ggcAAAACCGTTCGAACTGGATAAATATCCGTc < 1:1682427/35‑1 (MQ=255) gc‑ggcAAAACCGTTCGAACTGGATAAATATCAGTc < 1:3256445/35‑1 (MQ=255) c‑ggcAAAACCGTTCGAACTGGATAAATATCCGTCg > 1:9555477/1‑35 (MQ=255) c‑ggcAAAACCGTTCGAACTGGATAAATATCCGTCg < 1:15297752/35‑1 (MQ=255) c‑GGggaaacccaccttgcttggtacgttatgcggc < 1:7495771‑M1/35‑33 (MQ=255) c‑GGggaaaaccaccttgcttggtacgttatgcggc < 1:5825703‑M1/35‑33 (MQ=255) c‑GGggaaaaccaccttgcttggtacgttatgcggc > 1:5220328‑M1/1‑3 (MQ=255) ggggaaaaccaccttgcttggtacgttatgcggcg > 1:13992608‑M1/1‑2 (MQ=255) ggggaaaaccaccttgcttggtacgttatgcggcg < 1:19298804‑M1/35‑34 (MQ=255) ggcAAAACCGTTCGAACTGGATAAATATCCGTCGa > 1:448984/1‑35 (MQ=255) ggcAAAACCGTTCGAACTGGATAAATATCCGTCGa < 1:228220/35‑1 (MQ=255) ggcAAAACAGTTCGAACTGGATAAATATCCGTCGa < 1:14782358/35‑1 (MQ=255) gggaaaaccaccttgcttggtacgttatgcggcga > 1:1079538‑M1/1‑1 (MQ=255) gcAAAACCGTTCGAACTGGATAAATATCCGTCGaa < 1:8967490/35‑1 (MQ=255) gcAAAACCGTTCGAACTGGATAAATATCCGTCGaa < 1:13520935/35‑1 (MQ=255) gcAAAACCGTTCGAACTGGATAAATATCCGTCGaa < 1:13658556/35‑1 (MQ=255) gcAAAACCGTTCGAACTGGATAAATATCCGTCGaa < 1:1004463/35‑1 (MQ=255) gcAAAACCGTTCGAACTGGATAAATATCCGTCGaa > 1:10014007/1‑35 (MQ=255) | CCGCGCGACGGTGAAGGATGGTCGCTTTGTGGC‑GGCAAAACCGTTCGAACTGGATAAATATCCGTCGAA > REL606/1075731‑1075799 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |