New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 601491 = | 81 (0.790) | 7 (0.100) | 3/34 | NT | 10.1% | coding (530/1134 nt) | fepE | regulator of length of O‑antigen component of lipopolysaccharide chains |
? | REL606 | 2785963 = | 67 (0.920) | coding (408/1338 nt) | ygcS | predicted transporter |
CCCGCTCAAAACGGTCTGCGCCTCTTCACTGGTTGGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/601531‑601491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGAA > REL606/2785963‑2785996 CCCGCTCAAAACGGTCTGCGCCTCTTCACTGGTTG < 1:14655434/35‑1 CCCGCTCAAAACGGTCTGCGCCTCTTCACTGGTTG < 1:17108065/35‑1 CCCGCTCAAAACGGTCTGCGCCTCTTCACTGGTTG > 1:4299432/1‑35 CCCGCTCAAAACGGTCTGCGCCTCTTCACTGGTTG > 1:12664126/1‑35 CCGCTCAAAACGGTCTGCGCCTCTTCACTGGTTGG < 1:7300565/35‑1 CCGCTCAAAACGGTCTGCGCCTCTTCACTGGTTGG < 1:19721938/35‑1 CGCTCAAAACGGTCTGCGCCTCTTCACTGGTTGGC > 1:1659334/1‑35 CGCTCAAAACGGTCTGCGCCTCTTCACTGGTTGGC > 1:17514390/1‑35 CGCTCAAAACGGTCTGCGCCTCTTCACTGGTTGGC > 1:7592675/1‑35 CGCTCAAAACGGTCTGCGCCTCTTCACTGGTTGGC < 1:1296742/35‑1 CGCTCAAAACGGTCTGCGCCTCTTCACTGGTTGGC < 1:12766919/35‑1 GCTCAAAACGGTCTGCTCCTCTTCACTGGTTGGCG > 1:2104029/1‑35 GCTCAAAACGGTCTGCGCCTCTTCACTGGTTGGCG > 1:1354797/1‑35 GCTCAAAACGGTCTGCGCCTCTTCACTGGTTGGCG < 1:6816779/35‑1 GCTCAAAACGGTCTGCGCCTCTTCACTGGTTGGCG > 1:2586534/1‑35 CTCAAAACGGTCTGCGCCTCTTCACTGGTTTGCGC > 1:10082866/1‑35 CTCAAAACGGTCTGCGCCTCTTCACTGGTTGGCGC < 1:11853041/35‑1 CTCAAAACGGTCTGCGCCTCTTCACTGGTTGGCGC < 1:4807536/35‑1 CTCAAAACGGTCTGCGCCTCTTCACTGGTTGGCGC > 1:7969289/1‑35 CTCAAAACGGTCTGCGCCTCTTCACTGGTTGGCGC < 1:9381485/35‑1 TCAAAACGGTCTGCGCCTCTTCACTGGTTGGCGCG < 1:8784008/35‑1 TCAAAACGGTCTGCGCCTCTTCACTGGTTGGCGCG < 1:9641285/35‑1 TCAAAACGGTCTGCGCCTCTTCACTGGTTGGCGCG > 1:15303534/1‑35 TCAAAACGGTCTGCGCCTCTTCACTGGTTGGCGCG < 1:13781687/35‑1 CAAAACGGTCTGCGCCTCTTCACTGGTTGGCGCGG < 1:20052372/35‑1 AAAACGGTCTGCGCCTCTTCACTGGTTGGCGCGGG > 1:19300923/1‑35 AAAACGGTCTGCGCCTCTTCACTGGTTGGCGCGGG > 1:17256023/1‑35 AAAACGGTCTGCGCCTCTTCACTGGTTGGCGCGGG > 1:3839043/1‑35 AAAACGGTCTGCGCCTCTTCACTGGTTGGCGCGGG > 1:8058793/1‑35 AAACGGTCTGCGCCTCTTCACTGGTTGGCGCGGGG > 1:12210413/1‑35 AACGGTCTGCGCCTCTTCACTGGTTGGGGCGGGGA > 1:16839460/1‑35 AACGGTCTGCGCCTCTTCACTGGTTGGCGGGGGGA > 1:20281262/1‑35 AACGGTCTGCGCCTCTTCACTGGTTGGCGCGGcaa > 1:11484335/1‑32 AACGGTCTGCGCCTCTTCACTGGTTGGCGCGGGaa > 1:18479572/1‑33 CGGTCTGCTCCTCTTCACTGGTTGGCGCGGGGAAA > 1:7594880/1‑35 CGGTCTGCGCCTCTTCACTGGTTGGCGCGGGGAAA > 1:1372307/1‑35 CGGTCTGCGCCTCTTCACTGGTTGGCGCGGGGAAA > 1:6371232/1‑35 GGTCTGCGCCTCTTCACTGGTTGGCGCGGGGAAAc > 1:6283868/1‑34 GGTCTGCGCCTCTTCACTGGTTGGCGCGGGGAAAA > 1:11089695/1‑35 GTCTGCGCCTCTTCACTGGTTGGCGCGGGGAAAAT > 1:7620071/1‑35 GTCTGCGCCTCTTCACTGGTTGGCGCGGGGAAAAT > 1:5311233/1‑35 GTCTGCGCCTCTTCACTGGTTGGCGCGGGAAAAAa > 1:2867617/1‑34 TCTGCGCCTCTTCACTGGTTGGCGCGGGGAAAATT > 1:8983690/1‑35 CTGCGCCTCTTCACTGGTTGGCGCGGGAAAAATTa > 1:17296631/1‑34 GCGCCTCTTCACTGGTTGGCGCGGGGAAAATTatc > 1:12868710/1‑32 GGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCT > 1:11440918/1‑35 GGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCT < 1:2060017/35‑1 GGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCT < 1:11478756/35‑1 GGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCT > 1:1798062/1‑35 GGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCT > 1:17771996/1‑35 GCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCTA < 1:6165851/35‑1 GCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCTA < 1:5526570/35‑1 GCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCTA < 1:17568662/35‑1 GCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCTA > 1:10781198/1‑35 CGCGGGGAAAATTCAGCCAGCAAGGTGTGACCTAC > 1:19686490/1‑35 CGCGGGGAAAATTCAGCCAGCAAGGTGTGACCTAC < 1:16313155/35‑1 CGCGGGGAAAATTCAGCCAGCAAGGTGTGACCTAC < 1:15001560/35‑1 GCGGGGANAATTCAGCCAGCAAGGTGTGACCTACT > 1:17347706/1‑35 GCGGGGAAAATTCAGCCAGCAAGGTGTGACCTACT < 1:12483626/35‑1 GCGGGGAAAATTCAGCCAGCAAGGTGTGACCTACT > 1:11112827/1‑35 GCGGGGAAAATTCAGCCAGCAAGGTGTGACCTACT > 1:19578397/1‑35 GCGGGGAAAATTCAGCCAGCAAGGTGTGACCTACT < 1:18821020/35‑1 GCGGGGAAAATTCAGCCAGCAAGGTGTGACCTACT > 1:5058229/1‑35 GCGGGGAAAATTCAGCAAGCAAGGTGTGACCTACT < 1:19238877/35‑1 ctGGGAAAATTCAGCCAGCAAGGTGTGACCTACTG < 1:7207375/33‑1 CGGGGAAAATTCAGCCAGCAAGGTGTGACCTACTG > 1:1102675/1‑35 CGGGGAAAATTCAGCCAGCAAGGTGTGACCTACTG > 1:5726514/1‑35 CGGGGAAAATTCAGCCAGCAAGGTGTGACCTACTG > 1:4753052/1‑35 CGGGGAAAATTCAGCCAGCAAGGTGTGACCTACTG > 1:15099608/1‑35 CGGGGAAAATTCAGCCAGCAAGGTGTGACCTACTG > 1:2471594/1‑35 CGGGGAAAATTCAGCCAGCAAGGTGTGACCTACTG < 1:2307384/35‑1 CGGGGAAAATTCAGCCAGCAAGGTGTGACCTACTG > 1:20251436/1‑35 GGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGA > 1:10501449/1‑35 GGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGA < 1:14855203/35‑1 GGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGA > 1:17005242/1‑35 GGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGA > 1:13222914/1‑35 GGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGA > 1:17637157/1‑35 GGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGA > 1:19381601/1‑35 GGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGA > 1:6408998/1‑35 GGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGA > 1:4349756/1‑35 GGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGA > 1:4864003/1‑35 GGGAAAATTCAGCCAGCAAGGTGTGACCTACTGAA > 1:17400440/1‑35 GGGAAAATTCAGCCAGCAAGGTGTGACCTACTGAA < 1:12096673/35‑1 GGGAAAATTCAGCCAGCAAGGTGTGACCTACTGAA < 1:9329769/35‑1 GGGAAAATTCAGCCAGCAAGGTGTGACCTACTGAA > 1:9365553/1‑35 CCCGCTCAAAACGGTCTGCGCCTCTTCACTGGTTGGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/601531‑601491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcggGGAAAATTCAGCCAGCAAGGTGTGACCTACTGAA > REL606/2785963‑2785996 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |