Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 546,191 IS1 (+) +9 bp 100% coding (346‑354/384 nt) ybcQ → predicted antitermination protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 546191 =0 (0.000)77 (0.780) 35/46 NT 100% coding (346/384 nt) ybcQ predicted antitermination protein
?REL606 546932 = NA (NA)noncoding (768/768 nt) IS1 repeat region
* ? REL606 = 5461990 (0.000)125 (1.220) 42/48 NT 100% coding (354/384 nt) ybcQ predicted antitermination protein
?REL606 = 547699 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 151 total aligned reads displayed.

CTTCATACTCATAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTA  >  REL606/546898‑546963
                                  |                               
cTTCATACTCATAAGTAGTGGAGaaaccgaaaccg                                 <  1:19208413/35‑1 (MQ=255)
 ttCATACTCATAAGTAGTGGAGAAACCGAAACCgg                                <  1:3078746/35‑1 (MQ=255)
 ttCATACTCATAAGTAGTGGAGAAACCGAAACCgg                                >  1:1388580/1‑35 (MQ=255)
  tCATACTCATAAGTAGTGGAGAAACCGAAACCGGt                               >  1:20463837/1‑35 (MQ=255)
  tCATACTCATAAGTAGTGGAGAAACCGAAACCGGt                               >  1:15598755/1‑35 (MQ=255)
  tCATACTCATAAGTAGTGGAGAAACCGAAACCGGt                               <  1:16454488/35‑1 (MQ=255)
  tCATACTCATAAGTAGTGGAGAAACCGAAACCGGt                               >  1:8048689/1‑35 (MQ=255)
  tCATACTCATAAGTAGTGGAGAAACCGAAACCGGt                               >  1:17056822/1‑35 (MQ=255)
   cATACTCATAAGTAGTGGAGAAACCGAAACCGGTa                              <  1:13340779/35‑1 (MQ=255)
   cATACTCATAAGTAGTGGAGAAACCGAAACCGGTa                              <  1:6915495/35‑1 (MQ=255)
    aTACTCATAAGTAGTGGAGAAACCGAAACCGGTaa                             >  1:3660655/1‑35 (MQ=255)
     tACTCATAAGTAGTGGAGAAACCGAAACCGGTAAt                            <  1:19935868/35‑1 (MQ=255)
     tACTCATAAGTAGTGGAGAAACCGAAACCGGTAAt                            >  1:6077491/1‑35 (MQ=255)
     tACTCATAAGTAGTGGAGAAACCGAAACCGGTAAt                            >  1:5132146/1‑35 (MQ=255)
     tACCCAAAAGTAGTGGAGAAACCGAAACCGGTAAt                            <  1:13949783/35‑1 (MQ=37)
      aCTCATAAGTAGTGGAGAAACCGAAACCGGTAATg                           <  1:7647706/35‑1 (MQ=255)
      aCTCATAAGTAGTGGAGAAACCGAAACCGGTAATg                           >  1:11026360/1‑35 (MQ=255)
      aCTCATAAGTAGTGGAGAAACCGAAACCGGTAATg                           >  1:3581887/1‑35 (MQ=255)
      aCTCATAAGTAGTGGAGAAACCGAAACCGGTAATg                           >  1:18805126/1‑35 (MQ=255)
      aCTCATAAGTAGTGGAGAAACCGAAACCGGTAATg                           >  1:2423649/1‑35 (MQ=255)
        tCATAAGTAGTGGAGAAACCGAAACCGGTAATGAc                         >  1:17409862/1‑35 (MQ=255)
        tCATAAGTAGTGGAGAAACCGAAACCGGTAATGAc                         <  1:17924796/35‑1 (MQ=255)
        tCATAAGTAGTGGAGAAACCGAAACCGGTAATGAc                         <  1:10395596/35‑1 (MQ=255)
         cATAAGTAGTGTAGAAACCGAAACCGGTAATGACt                        >  1:7674306/1‑35 (MQ=255)
         cATAAGTAGTGGAGAAACCGAAACCGGTAATGACt                        >  1:17135871/1‑35 (MQ=255)
         cATAAGTAGTGGAGAAACCGAAACCGGTAATGACt                        >  1:15558508/1‑35 (MQ=255)
         cATAAGTAGTGGAGAAACCGAAACCGGTAATGACt                        <  1:6271606/35‑1 (MQ=255)
         cATAAGTAGTGGAGAAACCGAAACCGGTAATGACt                        >  1:6811689/1‑35 (MQ=255)
          aTAAGTAGTGGAGAAACCGAAACCGGTAATGACTc                       <  1:14064025/35‑1 (MQ=255)
          aTAAGTAGTGGAGAAACCGAAACCGGTAATGACTc                       >  1:17620337/1‑35 (MQ=255)
           tAAGTAGTGGAGAAACCGAAACCGGTAATGACTcc                      <  1:10228109/35‑1 (MQ=255)
           tAAGTAGTGGAGAAACCGAAACCGGTAATGACTcc                      <  1:14686834/35‑1 (MQ=255)
           tAAGTAGTGGAGAAACCGAAACCGGTAATGACTcc                      >  1:10363291/1‑35 (MQ=255)
           tAAGTAGTGGAGAAACCGAAACCGGTAATGACTcc                      <  1:16281010/35‑1 (MQ=255)
           tAAGTAGTGGAGAAACCGAAACCGGTAATGACTcc                      >  1:3625018/1‑35 (MQ=255)
            aaGTAGTGGAGAAACCGAAACCGGTAATGACTCCa                     >  1:5136745/1‑35 (MQ=255)
            aaGTAGTGGAGAAACCGAAACCGGTAATGACTCCa                     >  1:8132235/1‑35 (MQ=255)
            aaGTAGTGGAGAAACCGAAACCGGTAATGACTCCa                     >  1:16517130/1‑35 (MQ=255)
             agtagtGGAGAAACCGAAACCGGTAATGACTCCaa                    <  1:19622807/35‑1 (MQ=255)
             agtagtGGAGAAACCGAAACCGGTAATGACTCCaa                    <  1:16881078/35‑1 (MQ=255)
              gtaggGGAGAAACCGAAACCGGTAATGACTCCAAc                   <  1:976357/35‑1 (MQ=255)
              gtaggGGAGAAACCGAAACCGGTAATGACTCCAAc                   <  1:12994181/35‑1 (MQ=255)
               tagtGGAGAAACCGAAACCTGTAATGACTCCAACt                  >  1:8400473/1‑35 (MQ=255)
               tagtGGAGAAACCGAAACCGGTAATGACTCCAACt                  <  1:19952926/35‑1 (MQ=255)
               tagtGGAGAAACCGAAACCGGTAATGACTCCAACt                  >  1:20484429/1‑35 (MQ=255)
               tagtGGAGAAACCGAAACCGGTAATGACTCCAACt                  <  1:85633/35‑1 (MQ=255)
               tagtGGAGAAACCGAAACCGGTAATGACTCCAACt                  <  1:13439253/35‑1 (MQ=255)
               tagtGGAGAAACCGAAACCGGTAATGACTCCAACt                  <  1:10845955/35‑1 (MQ=255)
               tagtGGAGAAACCGAAACCGGTAATGACTCCAACt                  <  1:4302526/35‑1 (MQ=255)
               tagtGGAGAAACAGAAACCGGTAATGACTCCAACt                  <  1:2483252/35‑1 (MQ=255)
                agtGGAGAAACCGAAACCGGTAATGACTCCAACtt                 >  1:3528050/1‑35 (MQ=255)
                agtGGAGAAACCGAAACCGGTAATGACTCCAACtt                 <  1:10700606/35‑1 (MQ=255)
                agtGGAGAAACCGAAACCGGTAATGACTCCAACtt                 <  1:15216453/35‑1 (MQ=255)
                 gtGGAGAAACCGAAACCGGTAATGACTCCAACTTa                >  1:15411459/1‑35 (MQ=255)
                 gtGGAGAAACCGAAACCGGTAATGACTCCAACTTa                >  1:2154516/1‑35 (MQ=255)
                 gtGGAGAAACCGAAACCGGTAATGACTCCAACTTa                <  1:3867379/35‑1 (MQ=255)
                  tGGAGAAACCGAAACCGGTAATGACTCCAACTTAt               <  1:16061154/35‑1 (MQ=255)
                  tGGAGAAACCGAAACCGGTAATGACTCCAACTTAt               >  1:15319879/1‑35 (MQ=255)
                   ggAGAAACCGAAACCGGTAATGACTCCAACTTAtt              >  1:7106987/1‑35 (MQ=255)
                   ggAGAAACCGAAACCGGTAATGACTCCAACTTAtt              >  1:8837067/1‑35 (MQ=255)
                   ggAGAAACCGAAACCGGTAATGACTCCAACTTAtt              >  1:10167331/1‑35 (MQ=255)
                   ggAGAAACCGAAACCGGTAATGACTCCAACTTAtt              >  1:1160601/1‑35 (MQ=255)
                   ggAGAAACCGAAACCGGTAATGACTCCAACTTAtt              <  1:11608896/35‑1 (MQ=255)
                   ggAGAAACCGAAACCGGTAATGACTCCAACTTAtt              >  1:15952065/1‑35 (MQ=255)
                    gagaAACCGAAACCGGTAATGACTCCAACTTATTg             >  1:7308418/1‑35 (MQ=255)
                    gagaAACCGAAACCGGTAATGACTCCAACTTATTg             >  1:14368138/1‑35 (MQ=255)
                    gagaAACCGAAACCGGTAATGACTCCAACTTATTg             <  1:16229757/35‑1 (MQ=255)
                     agaAACCGAAACCGGTAATGACTCCAACTTATTGa            >  1:8403788/1‑35 (MQ=255)
                     agaAACCGAAACCGGTAATGACTCCAACTTATTGa            >  1:1186195/1‑35 (MQ=255)
                     agaAACCGAAACCGGTAATGACTCCAACTTATTGa            <  1:16903870/35‑1 (MQ=255)
                     agaAACCGAAACCGGTAATGACTCCAACTTATTGa            <  1:12777638/35‑1 (MQ=255)
                     agaAACCGAAACCGGTAATGACTCCAACTTATTGa            <  1:5536993/35‑1 (MQ=255)
                     agaAACCGAAACCGGTAATGACTCCAACTTATTGa            >  1:5866492/1‑35 (MQ=255)
                      gaaaccgaaaccTGTAATGACTCCAACTTATTGAt           >  1:16850372/1‑35 (MQ=255)
                       aaaccgaaaccgGTAATGACTCCAACTTATTGATa          >  1:18035627/1‑35 (MQ=255)
                       aaaccgaaaccgGTAATGACTCCAACTTATTGATa          >  1:7278149/1‑35 (MQ=255)
                       aaaccgaaaccgGTAATGACTCCAACTTATTGATa          >  1:7141568/1‑35 (MQ=255)
                       aaaccgaaaccgGTAATGACTCCAACTTATTGATa          <  1:5164714/35‑1 (MQ=255)
                        aaccgaaaccgGTAATGACTCCAACTTATTGATAg         >  1:13170113/1‑35 (MQ=255)
                        aaccgaaaccgGTAATGACTCCAACTTATTGATAg         >  1:19320979/1‑35 (MQ=255)
                        aaccgaaaccgGTAATGACTCCAACTTATTGATAg         <  1:15033653/35‑1 (MQ=255)
                         accgaaaccgGTAATGACTCCAACTTATTGATAgt        >  1:12144583/1‑35 (MQ=255)
                         accgaaaccgGTAATGACTCCAACTTATTGATAgt        >  1:19487813/1‑35 (MQ=255)
                          ccgaaaccgGTAATGACTCCAACTTATTGATAgtg       >  1:6203846/1‑35 (MQ=255)
                          ccgaaaccgGTAATGACTCCAACTTATTGATAgtg       <  1:2444030/35‑1 (MQ=255)
                           cgaaaccgGTAATGACTCCAACTTATTGATAgtgt      <  1:5972027/35‑1 (MQ=255)
                           cgaaaccgGTAATGACTCCAACTTATTGATAgtgt      >  1:17112911/1‑35 (MQ=255)
                           cgaaaccgGTAATGACTCCAACTTATTGATAgcgt      >  1:8796562/1‑35 (MQ=255)
                           cgaaaccgGTAATGACTCCAAATTATTGATAgtgt      <  1:10242962/35‑1 (MQ=255)
                            gaaaccgGTAATGACTCCAACTTATTGATAGTGtt     <  1:10175165/35‑1 (MQ=40)
                            gaaaccgGTAATGACTCCAACTTATTGATAGTGtt     <  1:2799318/35‑1 (MQ=40)
                            gaaaccgGTAATGACTCCAACTTATTGATAGTGtt     <  1:18946105/35‑1 (MQ=40)
                            gaaaccgGTAATGACTCCAACTTATTGATAGTGtt     <  1:8485148/35‑1 (MQ=40)
                             aaaccgGTAATGACTCCAACTTATTGATAGTGttt    <  1:19879364/35‑1 (MQ=38)
                             aaaccgGTAATGACTCCAACTTATTGATAGTGttt    <  1:5813792/35‑1 (MQ=38)
                              aaccgGTAATGACTCCAACTTATTGATAGTGtttt   <  1:19751573/35‑1 (MQ=35)
                               accgGTAATGACTCCAACTTATTGATAGTGTTTTa  >  1:12765254/1‑35 (MQ=32)
                               accgGTAATGACTCCAACTTATTGATAGTGTTTTa  <  1:13415412/35‑1 (MQ=32)
                               accgGTAATGACTCCAACTTATTGATAGTGTTTTa  >  1:18627561/1‑35 (MQ=32)
                               accgGTAATGACTCCAACTTATTGATAGTGGTTTa  >  1:11444538/1‑35 (MQ=12)
                                  |                               
CTTCATACTCATAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTA  >  REL606/546898‑546963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.