New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 408655471 (0.690)6 (0.070) 5/42 NT 6.5% coding (604/903 nt) fieF ferrous iron efflux protein F
?REL606 4620932 = 111 (1.230)intergenic (+49/‑41) slt/trpR lytic murein transglycosylase, soluble/Trp operon repressor

Only 100 of 127 total aligned reads displayed.

TTTATATAGCGCGTTACGCATGGGATATGAGGCGGTACAGTCATTACTGGATCGCGCATTACCTGATGA  >  REL606/4086520‑4086588
                                  |                                  
tttATATAGCGCGTTACGCATGGGATATGAGGCGG                                    <  1:14337284‑M1/35‑1 (MQ=255)
 ttATATAGCGCGTTACGTATGGGATATGAGGCGGg                                   >  1:7499399‑M1/1‑34 (MQ=255)
 ttATATAGCGCGTTACGCATGGGATATGAGGCGGt                                   <  1:5480380/35‑1 (MQ=255)
 ttATATAGCGCGTTACGCATGGGATATGAGGCGGg                                   >  1:9367883‑M1/1‑34 (MQ=255)
 ttATATAGCGCGTTACGCATGGGATATGAGGCGGg                                   >  1:19329665‑M1/1‑34 (MQ=255)
 ttATATAGCGCGTTACGCATGGGATATGAGGCGGg                                   >  1:12350515‑M1/1‑34 (MQ=255)
  tatataGCGCGTTACGCATGGGATATGAGGCGGgg                                  >  1:105024‑M1/1‑33 (MQ=255)
  tatataGCGCGTTACGCATGGGATATGAGGCGGgg                                  >  1:20116036‑M1/1‑33 (MQ=255)
    tataGCGCGTTACGCATGGGATATGAGGCGGgaga                                >  1:15818132‑M1/1‑31 (MQ=255)
    tataGCGCGTTACGCATGGGATATGAGGCGGTACa                                <  1:15640324/35‑1 (MQ=255)
     ataGCGCGTTACGCATGGGATATGAGGCGGTACAg                               <  1:15084410/35‑1 (MQ=255)
     ataGCGCGTTACGCATGGGATATGAGGCGGTACAg                               <  1:18689673/35‑1 (MQ=255)
      taGCGCGTTACGCATGGGATATGAGGCGGTACAGt                              <  1:913151/35‑1 (MQ=255)
       aGCGCGTTACGCATGGGATATGAGGCGGggcaggc                             >  1:7944328‑M1/1‑28 (MQ=255)
       aGCGCGTTACGCATGGGATATGAGGCGGTACAGTc                             <  1:17733304/35‑1 (MQ=255)
        gcgcGTTACGCATGGGATATGAGGCGGTACAGTCa                            <  1:2317948/35‑1 (MQ=255)
         cgcgTTACGCATGGGATATGAGGCGGgggagtcat                           >  1:20281550‑M1/1‑26 (MQ=255)
         cgcgTTACGCATGGGATATGAGGCGGTACAGTCAt                           <  1:18949332/35‑1 (MQ=255)
         cgcgTTACGCATGGGATATGAGGCGGTACAGTCAt                           <  1:18597806/35‑1 (MQ=255)
         cgcgTTACGCATGGGATATGAGGCGGTACAGTCAt                           <  1:18089957/35‑1 (MQ=255)
          gcgTTACGCATGGGATATGAGGCGGgggaggcatt                          >  1:6300936‑M1/1‑25 (MQ=255)
          gcgTTACGCATGGGATATGAGGCGGTACAGTCAtt                          <  1:6178104/35‑1 (MQ=255)
          gcgTTACGCATGGGATATGAGGCGGTACAGTCAtt                          <  1:20085682/35‑1 (MQ=255)
          gcgTTACGCATGGGATATGAGGCGGGGCAGTCAtt                          >  1:2555961/1‑35 (MQ=38)
           cgTTACGCATGGGATATGAGGCGGggggggcattt                         >  1:12039171‑M1/1‑24 (MQ=255)
           cgTTACGCATGGGATATGAGGCGGgggaggcattt                         >  1:855444‑M1/1‑24 (MQ=255)
           cgTTACGCATGGGATATGAGGCGGTACAGTCATTa                         <  1:4518477/35‑1 (MQ=255)
            tttACGCATGGGATATGAGGCGGTACAGTCATTAc                        <  1:9102977/34‑1 (MQ=255)
            tttACGCATGGGATATGAGGCGGTACAGTCATTAc                        <  1:16013883/34‑1 (MQ=255)
            gTTACGCATGGGATATGAGGCGGTACAGTCATTAc                        <  1:5466981/35‑1 (MQ=255)
            gTTACGCATGGGATATGAGGCGGTACAGTCATTAc                        <  1:10404582/35‑1 (MQ=255)
            gTTACGCATGGGATATGAGGCGGTACAGTCATTAc                        <  1:14959269/35‑1 (MQ=255)
            gTTACGCATGGGATATGAGGCGGTACAGTCATTAc                        <  1:1541002/35‑1 (MQ=255)
             ttACGCATGGGATATGAGGCGGTACAGTCATTACt                       <  1:13072922/35‑1 (MQ=255)
               aCGCATGGGATATGAGGCGGTACAGTCATTACTgg                     <  1:11400816/35‑1 (MQ=255)
               aCGCATGGGATATGAGGCGGTACAGTCATTACTgg                     <  1:3444256/35‑1 (MQ=255)
               aCGCATGGGATATGAGGCGGTACAGTCATTACTgg                     <  1:5200805/35‑1 (MQ=255)
               aCGCATGGGATATGAGGCGGTACAGTCATTACTgg                     <  1:11835626/35‑1 (MQ=255)
               aCGCATGGGATATGAGGCGGGGGAGGCATTACTgg                     >  1:1151574/1‑35 (MQ=19)
                cGCATGGGATATGAGGCGGTACAGTCATTACTGGa                    <  1:6150019/35‑1 (MQ=255)
                cGCATGGGATATGAGGCGGTACAGTCATTACTGGa                    <  1:11637868/35‑1 (MQ=255)
                 gCATGGGATATGAGGCGGTACAGTCATTACTGGAt                   <  1:8394895/35‑1 (MQ=255)
                 gCATGGGATATGAGGCGGTACAGTCATTACTGGAt                   <  1:16609892/35‑1 (MQ=255)
                 gCATGGGATATGAGGCGGTACAGTCATTACTGGAt                   <  1:6074894/35‑1 (MQ=255)
                 gCATGGGATATGAGGCGGTACAGTCATTACTGGAt                   <  1:10721059/35‑1 (MQ=255)
                  cATGGGATATGAGGCGGTACAGTCATTACTGGATc                  <  1:12937397/35‑1 (MQ=255)
                   aTGGGATATGAGGCGGTACAGTCATTACTGGATcg                 <  1:1967186/35‑1 (MQ=255)
                   aTGGGATATGAGGCGGTACAGTCATTACTGGATcg                 <  1:12405788/35‑1 (MQ=255)
                   aTGGGATATGAGGCGGTACAGTCATTACTGGATcg                 <  1:7338420/35‑1 (MQ=255)
                   aTGGGATATGAGGCGGTACAGTCATTACTGGATcg                 <  1:15417294/35‑1 (MQ=255)
                     gggATATGAGGCGGTACAGTCATTACTGGATcgcg               <  1:18405284/35‑1 (MQ=255)
                     gggATATGAGGCGGTACAGTCATTACTGGATcgcg               <  1:17357816/35‑1 (MQ=255)
                      ggATATGAGGCGGTACAGTCATTACTGGATCgcgc              <  1:8448590/35‑1 (MQ=255)
                      ggATATGAGGCGGTACAGTCATTACTGGATCgcgc              <  1:827074/35‑1 (MQ=255)
                        atatGAGGCGGTACAGTCATTACTGGATCGCGCAt            <  1:16392795/35‑1 (MQ=255)
                        atatGAGGCGGTACAGTCATTACTGGATCGCGCAt            <  1:1597276/35‑1 (MQ=255)
                         tatGAGGCGGTACAGTCATTACTGGATCGCGCAtt           <  1:3737854/35‑1 (MQ=255)
                          atGAGGCGGTACAGTCATTACTGGATCGCGCATTa          <  1:6608073/35‑1 (MQ=255)
                          atGAGGCGGTACAGTCATTACTGGATCGCGCATTa          <  1:7045155/35‑1 (MQ=255)
                          atGAGGCGGTACAGTCATTACTGGATCGCGCATTa          <  1:14989208/35‑1 (MQ=255)
                          atGAGGCGGTACAGTCATTACTGGATCGCGCATTa          <  1:15481721/35‑1 (MQ=255)
                          atGAGGCGGTACAGTCATTACTGGATCGCGCATTa          <  1:19706794/35‑1 (MQ=255)
                           tGAGGCGGTGCAGTCATTACTGGATCGCGCATTAc         <  1:2473935/35‑1 (MQ=255)
                           tGAGGCGGTACAGTCATTACTGGATCGCGCATTAc         <  1:13513993/35‑1 (MQ=255)
                           tGAGGCGGTAAAGTCATTACTGGATCGCGCATTAc         <  1:2137639/35‑1 (MQ=255)
                            gAGGCGGTACAGTCATTACTGGATCGCGCATTAcc        <  1:9801761/35‑1 (MQ=255)
                            gAGGCGGTACAGTCATTACTGGATCGCGCATTAcc        <  1:11735270/35‑1 (MQ=255)
                            gAGGCGGTACAGTCATTACTGGATCGCGCATTAcc        <  1:18795925/35‑1 (MQ=255)
                            gAGGCGGTACAGTCATTACTGGATCGCGCATTAcc        <  1:3090549/35‑1 (MQ=255)
                            gAGGCGGTACAGTCATTACTGGATCGCGCATTAcc        <  1:3156112/35‑1 (MQ=255)
                             aGGGGGTACAGTCATTACTGGATCGCGCATTACCt       <  1:5506903/35‑1 (MQ=255)
                             aGGCGGTACAGTCATTACTGGATCGCGCATTACCt       <  1:17461591/35‑1 (MQ=255)
                             aGGCGGTACAGTCATTACTGGATCGCGCATTACCt       <  1:12987575/35‑1 (MQ=255)
                              ggCGGTACAGTCATTACTGGATCGCGCATTCCCtg      <  1:5401979/35‑1 (MQ=255)
                              ggCGGTACAGTCATTACTGGATCGCGCATTACCtg      <  1:16183838/35‑1 (MQ=255)
                              ggCGGTACAGTCATTACTGGATCGCGCATTACCtg      <  1:12994466/35‑1 (MQ=255)
                              ggCGGTACAGTCATTACTGGATCGCGCATTACCtg      <  1:5227022/35‑1 (MQ=255)
                              ggCGGTACAGTCATTACTGGATCGCGCATTACCtg      <  1:2785198/35‑1 (MQ=255)
                              ggCGGTACAGTCATTACTGGATCGCGCATTACCtg      <  1:11154095/35‑1 (MQ=255)
                               gCGGTACAGTCATTACTGGATCGCGCATTACCtga     <  1:5995152/35‑1 (MQ=255)
                               gCGGTACAGTCATTACTGGATCGCGCATTACCtga     >  1:4477937/1‑35 (MQ=255)
                                cGGgggaggcattttgcttcccccgctaacaatgg    >  1:3715892‑M1/1‑3 (MQ=255)
                                cGGgggaggcattttgcttcccccgctaacaatgg    >  1:19785655‑M1/1‑3 (MQ=255)
                                cGGgggaggcattttgcttcccccgctaacaatgg    >  1:2864276‑M1/1‑3 (MQ=255)
                                cGGTACAGTCATTACTGGATCGCGCATTACCtgat    >  1:12353066/1‑35 (MQ=255)
                                cGGTACAGTCATTACTGGATCGCGCATTACCtgat    <  1:8923728/35‑1 (MQ=255)
                                 gggggaggcattttgcttcccccgctaacaatggc   >  1:13599689‑M1/1‑2 (MQ=255)
                                 gggggaggcattttgcttcccccgctaacaatggc   >  1:15209233‑M1/1‑2 (MQ=255)
                                 gggggaggcattttgcttcccccgctaacaatggc   >  1:4060109‑M1/1‑2 (MQ=255)
                                 ggTACAGTCATTACTGGATCGCGCATTACCtgatg   >  1:16352752/1‑35 (MQ=255)
                                 ggTACAGTCATTACTGGATCGCGCATTACCtgatg   >  1:18987179/1‑35 (MQ=255)
                                 ggTACAGTCATTACTGGATCGCGCATTACCtgatg   <  1:11788149/35‑1 (MQ=255)
                                 ggTACAGTCATTACTGGATCGCGCATTACCtgatg   >  1:5078568/1‑35 (MQ=255)
                                  ggggaggcattttgcttcccccgctaacaatggcg  >  1:6021022‑M1/1‑1 (MQ=255)
                                  ggggaggcattttgcttcccccgctaacaatggcg  >  1:10884537‑M1/1‑1 (MQ=255)
                                  ggggaggcattttgcttcccccgctaacaatggcg  <  1:9409968‑M1/35‑35 (MQ=255)
                                  gTACAGTCATTACTGGATCGCGCATTTCCtcatga  >  1:9799052/1‑35 (MQ=37)
                                  gTACAGTCATTACTGGATCGCGCATTACCtgatga  >  1:14475599/1‑35 (MQ=255)
                                  gTACAGTCATTACTGGATCGCGCATTACCtgatga  >  1:20184728/1‑35 (MQ=255)
                                  gTACAGTCATTACTGGATCGCGCATTACCtgatga  <  1:2769148/35‑1 (MQ=255)
                                  |                                  
TTTATATAGCGCGTTACGCATGGGATATGAGGCGGTACAGTCATTACTGGATCGCGCATTACCTGATGA  >  REL606/4086520‑4086588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.