Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,202,088 | C→T | 5.0% | A158T (GCT→ACT) | iclR ← | DNA‑binding transcriptional repressor |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,202,088 | 0 | C→T | 5.0% | 5.1 ‑0.4 ‑0.1 | 123 | A158T (GCT→ACT) | iclR | DNA‑binding transcriptional repressor |
Reads supporting (aligned to +/- strand): new base (3/3): ref base (69/47): total (73/50) | ||||||||||
Fisher's exact test strand distribution p-value = 6.88e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.28e-01 |
Only 100 of 130 total aligned reads displayed.
AGTTGGGCTAAAAAGGCTTTACCTGCACCGGAAGCGTGCATCGGCAATTTACCGCCGATAGGCGCGGAC > REL606/4202054‑4202122 | aGTTGGGCTAAAAAGGCTTTACCTGCACCGGAAGc > 1:19817348/1‑35 (MQ=255) aGTTGGGCTAAAAAGGCTTTACCTGCACCGGAAGc > 1:2832308/1‑35 (MQ=255) gTTGGGCTAAAAAGGCTTTACCTGCACCGGAAGCg < 1:9976003/35‑1 (MQ=255) gTTGGGCTAAAAAGGCTTTACCTGCACCGGAAGCg < 1:893080/35‑1 (MQ=255) gTTGGGCTAAAAAGGC‑TTACCTGCACCGGAAGCgg < 1:2091891/35‑2 (MQ=25) ttGGGCTAAAAAGGCTTTACCTGCACCGGAAGTGt < 1:14741836/35‑1 (MQ=255) ttGGGCTAAAAAGGCTTTACCTGCACCGGAAGCGt < 1:15153619/35‑1 (MQ=255) ttGGGCTAAAAAGGCTTTACCTGCACCGGAAGCGt < 1:2878228/35‑1 (MQ=255) ttGGGCTAAAAAGGCTTTACCTGCACCGGAAGCGt > 1:1215200/1‑35 (MQ=255) ttGGGCTAAAAAGGCTTTACCTGCACCGGAAGCGt > 1:6550253/1‑35 (MQ=255) ttGGGCTAAAAAGGCTTTACCTGCACCGGAAGCGt < 1:7790973/35‑1 (MQ=255) ttGGGCTAAAAAGGCTTTACCTGCACCGGAAGCGt < 1:19227405/35‑1 (MQ=255) tGGGCTAAAAAGGCTTTACCTGCACCGGAAGTGTg < 1:1834325/35‑1 (MQ=255) tGGGCTAAAAAGGCTTTACCTGCACCGGAAGCGTg < 1:7678052/35‑1 (MQ=255) gggCTAAAAAGGCTTTACCTGCACCGGAAGCGTGc < 1:784335/35‑1 (MQ=255) gggCTAAAAAGGCTTTACCTGCACCGGAAGCGTGc < 1:6036805/35‑1 (MQ=255) ggCTAAAAAGGCTTTACCTGCACCGGAAGCGTGCa > 1:13239833/1‑35 (MQ=255) ggCTAAAAAGGCTTTACCTGCACCGGAAGCGTGCa < 1:14939768/35‑1 (MQ=255) gCTAAAAAGGCTTTACCTGCACCGGAAGCGTGCAt > 1:11050726/1‑35 (MQ=255) gCTAAAAAGGCTTTACCTGCACCGGAAGCGTGCAt > 1:844746/1‑35 (MQ=255) gCTAAAAAGGCTTTACCTGCACCGGAAGCGTGCAt > 1:8557804/1‑35 (MQ=255) cTAAAAAGGCTTTACCTGCACCGGAAGCGTGCATc < 1:15901461/35‑1 (MQ=255) cTAAAAAGGCTTTACCTGCACCGGAAGCGTGCATc < 1:4292402/35‑1 (MQ=255) tAAAAAGGCTTTACCTGCACCGGAAGCGTGCATCg > 1:15189569/1‑35 (MQ=255) tAAAAAGGCTTTACCTGCACAGGAAGCGTGCATCg < 1:6532774/35‑1 (MQ=255) aaaaaGGCTTTACCTGCACCGGAAGCGTGCATCgg > 1:11951731/1‑35 (MQ=255) aaaaaGGCTTTACCTGCACCGGAAGCGTGCATCgg < 1:1023236/35‑1 (MQ=255) aaaaaGGCTTTACCTGCACCGGAAGCGTGCATCgg < 1:20021050/35‑1 (MQ=255) aaaaGGCTTTACCTGCACCGGAAGCGTGCATCGGc > 1:18934852/1‑35 (MQ=255) aaaaGGCTTTACCTGCACCGGAAGCGTGCATCGGc > 1:17419520/1‑35 (MQ=255) aaaaGGCTTTACCTGCACCGGAAGCGTGCATCGGc > 1:12367876/1‑35 (MQ=255) aaaaGGCTTTACCTGCACCGGAAGCGTGCATCGGc < 1:1205199/35‑1 (MQ=255) aagggCTTTCCCTGCACCGGAAGCGTGCATCGGCa < 1:18441453/32‑1 (MQ=25) aaaGGCTTTACCTGCACCGGAAGCGTGCATCGGCa < 1:14025693/35‑1 (MQ=255) aaaGGCTTTACCTGCACCGGAAGCGTGCATCGGCa < 1:7446706/35‑1 (MQ=255) aaaGGCTTTACCTGCACCGGAAGCGTGCATCGGCa > 1:1537377/1‑35 (MQ=255) aaaGGCTTTACCTGCACCGGAAGCGTGCATCGGCa > 1:10205011/1‑35 (MQ=255) aaaGGCTTTACCTGCACCGGAAGCGTACATCGGCa < 1:13718748/35‑1 (MQ=255) aaGGCTTTACCTGCACCGGAAGCGTGCATCGGCaa < 1:5367690/35‑1 (MQ=255) aaGGCTTTACCTGCACCGGAAGCGTGCATCGGCaa > 1:11319538/1‑35 (MQ=255) aaGGCTTTACCTGCACCGGAAGCGTGCATCGGCaa > 1:9253865/1‑35 (MQ=255) aGGCTTTACCTGCACCGGAAGCGTGCATCGGCAAt > 1:2477539/1‑35 (MQ=255) aGGCTTTACCTGCACCGGAAGCGTGCATCGGCAAt < 1:9731819/35‑1 (MQ=255) aGGCTTTACCTGCACCGGAAGCGTGCATCGGCAAt > 1:10068337/1‑35 (MQ=255) aGGCTTTACCTGCACCGGAAGCGTGCATCGGCAAt < 1:13472593/35‑1 (MQ=255) ggCTTTCCCTGCACCGGAAGCGTGCATCGGCAAtt < 1:12175917/35‑1 (MQ=255) ggCTTTACCTGCACCGGAAGCGTGCATCGGCAAtt > 1:10735690/1‑35 (MQ=255) ggCTTTACCTGCACCGGAAGCGTGCATCGGCAAtt < 1:475652/35‑1 (MQ=255) ggCTTTACCTGCACCGGAAGCGTGCATCGGCAAtt > 1:3149706/1‑35 (MQ=255) gCTTTACCTGCACCGGAAGCGTGCATCGGCAAttt > 1:11282041/1‑35 (MQ=255) gCTTTACCTGCACCGGAAGCGTGCATCGGCAAttt > 1:714650/1‑35 (MQ=255) gCTTTACCTGCACCGGAAGCGTGCATCGGCAAttt > 1:19782213/1‑35 (MQ=255) gCTTTACCTGCACCGGAAGCGTGCATCGGCAAtct > 1:10737886/1‑33 (MQ=255) cTTTACCTGCACCGGAAGCGTGCATCGGCAATTTa < 1:7894949/35‑1 (MQ=255) cTTTACCTGCACCGGAAGCGTGCATCGGCAATTTa < 1:10809/35‑1 (MQ=255) cTTTACCTGCACCGGAAGCGTGCATCGGCAATTTa < 1:7245189/35‑1 (MQ=255) cTTTACCTGCACCGGAAGCGTGCATCGGCAATTTa < 1:3701519/35‑1 (MQ=255) cTTTACCTGCACCGGAAGCGTGCATCGGCAATTTa > 1:12830551/1‑35 (MQ=255) cTTTACCTGCACCGGAAGCGTGCATCGGCAATTTa > 1:17474664/1‑35 (MQ=255) cTTTACCTGCACCGGAAGCGTGCATCGGCAATTTa > 1:19162648/1‑35 (MQ=255) tttACCTGCACCGGAAGCGTGCATCGGCAATTTAc > 1:20411270/1‑35 (MQ=255) tttACCTGCACCGGAAGCGTGCATCGGCAATTTAc > 1:10615945/1‑35 (MQ=255) tttACCTGCACCGGAAGCGTGCATCGGCAATTTAc < 1:11452697/35‑1 (MQ=255) tttACCTGCACCGGAAGCGTGCATCGGCAATTTAc > 1:12607929/1‑35 (MQ=255) tttACCTGCACCGGAAGCGTGCATCGGCAATTTAc < 1:497554/35‑1 (MQ=255) ttACCTGCACCGGAAGTGTGCATAGGCAATTTAcc < 1:2893328/35‑1 (MQ=25) ttACCTGCACCGGAAGCGTGCATCGGCAATTTAcc < 1:1552415/35‑1 (MQ=255) ttACCTGCACCGGAAGCGTGCATCGGCAATTTAcc > 1:14707069/1‑35 (MQ=255) ttACCTGCACCGGAAGCGTGCATCGGCAATTTAcc < 1:7333392/35‑1 (MQ=255) ttACCTGCACCGGAAGCGTGCATCGGCAATTTAcc > 1:6964803/1‑35 (MQ=255) ttACCTGCACCGGAAGCGTGCATCGGCAATTTAcc < 1:642926/35‑1 (MQ=255) ttACCTGCACCGGAAGCGTGCATCGGCAAATTAcc > 1:1389275/1‑35 (MQ=255) tACCTGCACCGGAAGCGTGCATCGGCAATTTAccg > 1:4083122/1‑35 (MQ=255) tACCTGCAACGGAAGCGTGCATCGGCAATTTAccg < 1:19146588/35‑1 (MQ=255) aCCTGCACCGGAAGCGTGCATCGGCAATTTAccgc < 1:12387830/35‑1 (MQ=255) aCCTGCACCGGAAGCGTGCATCGGCAATTTAccgc < 1:5529156/35‑1 (MQ=255) aCCTGCACCGGAAGCGTGCATCGGCAATTTAccgc > 1:4776531/1‑35 (MQ=255) ccTGCACCGGAAGCGTGCATCTGCAATTTAccgcc > 1:9416720/1‑35 (MQ=255) cTGCACCGGAAGCGTGCATCGGCAATTTAccgccg > 1:9496919/1‑35 (MQ=255) tGCACCGGAAGCGTGCATCGGCAATTTACCGCCGa > 1:2025927/1‑35 (MQ=255) tGCACCGGAAGCGTGCATCGGCAATTTACCGCCGa > 1:754437/1‑35 (MQ=255) tGCACCGGAAGCGTGCATCGGCAATTTACCGCCGa > 1:12074564/1‑35 (MQ=255) tGCACCGGAAGCGTGCATCGGCAATTTACCGCCGa > 1:5313986/1‑35 (MQ=255) gCACCGGAAGCGTGCATCGGCAATTTACCGCCGAt > 1:10580629/1‑35 (MQ=255) cACCGGAAGCGTGCATCGGCAATTTACCGCCGATa > 1:10561026/1‑35 (MQ=255) cACCGGAAGCGTGCATCGGCAATTTACCGCCGATa > 1:8227554/1‑35 (MQ=255) aCCGGAAGCGTGCATCGGCAAATTACCGCCGATAg > 1:15289984/1‑35 (MQ=255) ccGGAAGTGTGCATCGGCAATTTACCGCCGATAgg > 1:18886647/1‑35 (MQ=255) ccGGAAGTGTGCATCGGCAATTTACCGCCGATAgg > 1:12859433/1‑35 (MQ=255) ccGGAAGCGTGCATCGGCAATTTACCGCCGATAgg > 1:1802008/1‑35 (MQ=255) ccGGAAGCGTGCATCGGCAATTTACCGCCGATAgg > 1:7390613/1‑35 (MQ=255) cGGAAGTGTGCATCGGCAATTTACCGCCGATAGgc > 1:1028823/1‑35 (MQ=255) cGGAAGCGTGCATCGGCAATTTACCGCCGATAGgc > 1:7692835/1‑35 (MQ=255) cGGAAGCGTGCATCGGCAATTTACCGCCGATAGgc > 1:14491088/1‑35 (MQ=255) ggAAGCGTGCATCGGCAATTTACCGCCGATAGgcg > 1:9141815/1‑35 (MQ=255) ggAAGCGTGCATCGGCAATTTACCGCCGATAGgcg > 1:12158348/1‑35 (MQ=255) aGCGTGCATCGGCAATTTACCGCCGATAGGCGCgg > 1:15359784/1‑35 (MQ=255) aGCGTGCATCGGCAATTTACCGCCGATAGGCGCgg > 1:7034793/1‑35 (MQ=255) gCGTGCATCGGCAATTTACCGCCGATAGGGGCGGa > 1:16804093/1‑35 (MQ=255) cGTGCATCGGCAATTTACCGCCGATAGGCGCGGAc > 1:1800035/1‑35 (MQ=255) | AGTTGGGCTAAAAAGGCTTTACCTGCACCGGAAGCGTGCATCGGCAATTTACCGCCGATAGGCGCGGAC > REL606/4202054‑4202122 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |