New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1493949 = | 71 (0.690) | 13 (0.160) | 5/38 | NT | 17.3% | coding (533/1062 nt) | yncE | hypothetical protein |
? | REL606 | = 1619524 | 68 (0.840) | intergenic (‑133/+84) | rem/hokD | predicted protein/small toxic polypeptide |
Only 100 of 150 total aligned reads displayed.
AGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAGG > REL606/1619490‑1619558 | aGAACTTCAAACGCGTTGAAAATaaaaacaaaaac > 1:10029457/1‑35 (MQ=255) aGAACTTCAAACGCGTTGAAAATaaaaacaaaaac > 1:5621587/1‑35 (MQ=255) aGAACTTCAAACGCGTTGAAAATaaaaacaaaaac < 1:3872951/35‑1 (MQ=255) aGAACTTCAAACGCGTTGAAAATaaaaacaaaaac < 1:3755621/35‑1 (MQ=255) gAACTTCAAACGCGTTGAAAATAAAAACAAAAACc > 1:10109535‑M2/1‑34 (MQ=255) gAACTTCAAACGCGTTGAAAATAAAAACAAAAACc < 1:295981‑M2/35‑2 (MQ=255) aaCTTCAAACGCGTTGAAAATAAAAACAAAAACcc < 1:10452702‑M2/35‑3 (MQ=255) aaCTTCAAACGCGTTGAAAATAAAAACAAAAACcc > 1:4587415‑M2/1‑33 (MQ=255) aaCTTCAAACGCGTTGAAAATAAAAACAAAAACcc > 1:14254217‑M2/1‑33 (MQ=255) aCTTCAAACGCGTTGAAAATAAAAACAAAAACccg > 1:493672‑M2/1‑32 (MQ=255) cTTCAAACGCGTTGAAAATAAAAACAAANNCccgn < 1:16437002‑M2/35‑5 (MQ=255) cTTCAAACGCGTTGAAAATAAAAACAAAAACccgc > 1:9743582‑M2/1‑31 (MQ=255) cTTCAAACGCGTTGAAAATAAAAACAAAAACccgc > 1:12524557‑M2/1‑31 (MQ=255) ttCAAACGCGTTGAAAATAAAAACAAAAACgcgcc < 1:9383852‑M2/35‑6 (MQ=255) ttCAAACGCGTTGAAAATAAAAACAAAAACccgcc > 1:10061760‑M2/1‑30 (MQ=255) ttCAAACGCGTTGAAAATAAAAACAAAAACccgcc < 1:6192710‑M2/35‑6 (MQ=255) cAAACGCGTTGAAAATAAAAACAAAAACCCGCCGa > 1:14067813/1‑35 (MQ=255) aaaCGCGTTGAAAATAAAAACAAAAACCCGCCGaa > 1:9086799/1‑35 (MQ=255) aaCGCGTTGAAAATAAAAACAAAAACCCGCCGAAg > 1:18336427/1‑35 (MQ=255) aCGCGTTGAAAATAAAAACAAAAACCCGCCGAAGc > 1:20560289/1‑35 (MQ=255) cgcgTTGAAAATAAAAACAAAAACCCGCCGAAGCg > 1:2671653/1‑35 (MQ=255) cgcgTTGAAAATAAAAACAAAAACCCGCCGAAGCg > 1:6229985/1‑35 (MQ=255) cgcgTTGAAAATAAAAACAAAAACCCGCCGAAGCg > 1:4361732/1‑35 (MQ=255) gcgTTGAAAATAAAAACAAAAACCCGCCGAAGCgg > 1:11448381/1‑35 (MQ=255) cgTTGAAAATAAAAACAAAACCCCGCCGAAGCggg < 1:9040067/35‑1 (MQ=255) cgTTGAAAATAAAAACAAAACCCCGCCGAAGCggg < 1:10830812/35‑1 (MQ=255) cgTTGAAAATAAAAACAAAACCCCGCCGAAGCggg < 1:5242530/35‑1 (MQ=255) cgTTGAAAATAAAAACAAAAACCCGCCGAAGCggg > 1:8976565/1‑35 (MQ=255) gTTGAAAATAAAAACAAAAACCCGCCGAATCGGGt > 1:11959001/1‑35 (MQ=255) gTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGt > 1:20090291/1‑35 (MQ=255) gTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGt > 1:9468118/1‑35 (MQ=255) ttGAAAATAAAAACAAAAACCCGCCGAAGCGGGtt > 1:5205906/1‑35 (MQ=255) ttGAAAAAAAAAACAAAACCCCGCCGAAGCGGGtt < 1:3201702/35‑1 (MQ=18) tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTa > 1:5385695/1‑35 (MQ=255) tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTa > 1:852920/1‑35 (MQ=255) tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTa > 1:20328986/1‑35 (MQ=255) tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTa > 1:12843184/1‑35 (MQ=255) gAAAATAAAAACAAAAACCCGCCGAAGCGGGTTaa > 1:15100864/1‑35 (MQ=255) aaaaaTAAAAACAAAACCCCGCCGAAGCGGGTTaa < 1:9610551/34‑1 (MQ=255) aaaaTAAAAACAAAAACCCGCCGAAGCGGGTTAag > 1:5089788/1‑35 (MQ=255) aaaaAAAAACCAAAACCCCGCCGAAGCGGGTTAag < 1:1725202/35‑1 (MQ=17) aaaaAAAAAAAAAAACCCCGCCGAAGCGGGTTAag < 1:5597045/35‑1 (MQ=14) aaaTAAAAACAAAACCCCGCCGAAGCGGGTTAagt < 1:3392385/35‑1 (MQ=255) aaaTAAAAACAAAACCCCGCCGAAGCGGGTTAagt < 1:18311406/35‑1 (MQ=255) aaaTAAAAACAAAAACCCGCCGAAGCGGGTTAagt > 1:12417268/1‑35 (MQ=255) aaaAAAAAACAAAACCCCGCCGAAGCGGGTTAagt < 1:8931596/35‑1 (MQ=18) aaTAAAAACAAAAACCCGCCGAAGCGGGTTAcgtg > 1:6729913/1‑35 (MQ=255) aaTAAAAACAAAAACCCGCCGAAGCGGGTTAagtg > 1:2757464/1‑35 (MQ=255) aaTAAAAACAAAAACCCGCCGAAGCGGGTTAagtg > 1:12331682/1‑35 (MQ=255) aaaaaaacaaaaacccgccatccagaacaccggta > 1:929666‑M2/3‑14 (MQ=255) aTAAAAACAAAAACCCGCCGAAGCGGGTTAagtgc > 1:19246305/1‑35 (MQ=255) aaaaaacaaaaacccgccatccagaacaccggtaa > 1:13756006‑M2/2‑13 (MQ=255) aaaaacaaaaccCCGCCGAAGCGGGTTAagtgcga < 1:10705091/35‑1 (MQ=255) aaaaacaaaaacCCGCCGAAGCGGGTTAagtgcga < 1:4942284/35‑1 (MQ=255) aaaaacaaaaacCCGCCGAAGCGGGTTAagtgcga > 1:784214/1‑35 (MQ=255) aaaacagaaacccgccatccagaacaccggtaaaa > 1:7512858‑M2/1‑11 (MQ=255) aaaacaaaaacccgccatccagaacaccggtaaaa > 1:3632109‑M2/1‑11 (MQ=255) aaaacaaaaacCCGCCGAAGCGGGTTAagtgcgag > 1:9235435/1‑35 (MQ=255) aaacaaaaacCCGCAGAAGCGGGTTAagtgcgagt < 1:6744141/35‑1 (MQ=255) aacaaaaacccgccatccagaacaccggtaaaatg > 1:17076364‑M2/1‑9 (MQ=255) aacaaaaacccgccatccagaacaccggtaaaatg > 1:1617294‑M2/1‑9 (MQ=255) aacaaaaacCCGCCGAAGCGGGTTAagtgcgagtg > 1:11162702/1‑35 (MQ=255) aacaaaaacCCGCCGAAGCGGGTTAagtgcgagtg > 1:914157/1‑35 (MQ=255) caaaaaacccgccatccagaacaccggtaaaatga > 1:8290189‑M2/3‑8 (MQ=255) actaaaacccgccatccagaacaccggtaaaatga > 1:14411600‑M2/1‑8 (MQ=255) acaaaagcCCGCCGAAGCGGGTTAagtgcgagtgc > 1:1769094/1‑35 (MQ=255) acaaaaccCCGCCGAAGCGGGTTAagtgcgagtgc < 1:3709668/35‑1 (MQ=255) acaaaaccCCGCCGAAGCGGGTTAagtgcgagtgc < 1:11716050/35‑1 (MQ=255) ctaaaacccgccatccagaacaccggtaaaatgag > 1:10955909‑M2/3‑7 (MQ=255) caaaaccCCGCCGAAGCGGGTTAagtgcgagtgcg < 1:7591328/35‑1 (MQ=255) caaaaccCCGCCGAAGCGGGTTAagtgcgagtgcg < 1:20014121/35‑1 (MQ=255) caaaaccCCGCCGAAGCGGGTTAagtgcgagtgcg < 1:251406/35‑1 (MQ=255) caaaaacCCGCCCAAGCGGGTTAagtgcgagtgcg > 1:14494372/1‑35 (MQ=255) aaaaccCCGCCGAAGCGGGTTAagtgcgagtgcgg < 1:15707614/35‑2 (MQ=255) aaaaccCCGCCGAAGCGGGTTAAGTGCGAGTGCGt < 1:13633494/35‑1 (MQ=255) aaaaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGt > 1:17866067/1‑35 (MQ=255) aaaacccgccatccagcacaccggtaaaatgagta > 1:9579456‑M2/1‑5 (MQ=255) aaccccgccatccagaacaccggtaaaatgagtac > 1:17586912‑M2/1‑4 (MQ=255) aaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTg > 1:7656428/1‑35 (MQ=255) aaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTg > 1:15415174/1‑35 (MQ=255) aaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTg > 1:11873135/1‑35 (MQ=255) aaacCCGCCGAAGCGGGTTAAGTGCGAGTCCGTTg > 1:19375034/1‑35 (MQ=255) aaacCCGCAGAAGCGGGTTAAGTGCGAGTGCGTTg < 1:15571034/35‑1 (MQ=255) accccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGa < 1:12704399/33‑1 (MQ=255) accccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGa < 1:16434098/33‑1 (MQ=255) aacccgccatccagaacaccggtaaaatgagtacc > 1:17900060‑M2/1‑3 (MQ=255) aacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGa > 1:15646342/1‑35 (MQ=255) aacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGa > 1:12852590/1‑35 (MQ=255) aacCCGCCGAAGAGGGTTAAGTGCGAGTGCGTTGa < 1:7701631/35‑1 (MQ=255) ccccgccatccagaacaccggtaaaatgagtaccg > 1:12091203‑M2/2‑2 (MQ=255) ccccgccatccagaacaacggtaaaatgagtaccg > 1:935245‑M2/2‑2 (MQ=255) ccccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAg < 1:13799468/34‑1 (MQ=255) ccccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAg < 1:16108051/34‑1 (MQ=255) cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg < 1:13490901/35‑1 (MQ=255) cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg > 1:3406113/1‑35 (MQ=255) cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg > 1:11154502/1‑35 (MQ=255) cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg > 1:3911301/1‑35 (MQ=255) cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg < 1:11531876/35‑1 (MQ=255) cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg > 1:10656930/1‑35 (MQ=255) cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAgg < 1:15043088/35‑1 (MQ=255) | AGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAGG > REL606/1619490‑1619558 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |