New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2836222 | 59 (0.570) | 12 (0.120) | 7/46 | NT | 15.4% | coding (29/396 nt) | ygdD | conserved inner membrane protein |
? | REL606 | = 4349299 | 75 (0.760) | intergenic (‑166/‑110) | yjeH/groES | predicted transporter/co‑chaperonin GroES |
Only 100 of 148 total aligned reads displayed.
TTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTG > REL606/4349265‑4349333 | ttttGTGCTGATCAGAATTTTTTTTCTTTTTcccc < 1:13986840/35‑1 (MQ=255) ttttGTGCTGATCAGAATTTTTTTTCTTTTTcccc > 1:4728987/1‑35 (MQ=255) ttttGTGCTGATCAGAATTTTTTTTCTTTTTcccc < 1:9138939/35‑1 (MQ=255) tttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCc > 1:7241996‑M2/1‑34 (MQ=255) tttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCc > 1:1828663‑M2/1‑34 (MQ=255) ttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCt > 1:15516727/1‑35 (MQ=255) ttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCt > 1:2275179/1‑35 (MQ=255) ttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCt < 1:17690510/35‑1 (MQ=255) tgtgCTGATCAGAATTTTTTTTCTTTTTCCCCCtt < 1:9468478/35‑1 (MQ=255) tgtgCTGATCAGAATTTTTTTTCTTTTTCCCCCtt > 1:340820/1‑35 (MQ=255) tgtgCTGATCAGAATTTTTTTTCTTTTTCCCCCtt > 1:10234117/1‑35 (MQ=255) gtgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTg < 1:11121755/35‑1 (MQ=255) gtgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTg > 1:3075019/1‑35 (MQ=255) gtgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTg < 1:9504722/35‑1 (MQ=255) tgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGa < 1:7114080/35‑1 (MQ=255) tgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGa > 1:14405541/1‑35 (MQ=255) tgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGa > 1:2958692/1‑35 (MQ=255) gCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGaa < 1:15905921/35‑1 (MQ=255) gCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGaa < 1:10423418/35‑1 (MQ=255) gCTGACCAGAATTTTTTTTCTTTTTCCCCCTTGaa > 1:15785832/1‑35 (MQ=255) cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAg > 1:18432781/1‑35 (MQ=255) cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAg > 1:16032986/1‑35 (MQ=255) gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAggg < 1:2111663/35‑1 (MQ=255) gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAggg < 1:14761103/35‑1 (MQ=255) gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAggg > 1:7182533/1‑35 (MQ=255) gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAggg > 1:8335656/1‑35 (MQ=255) aTCAGAATTTTTTTTCTTTTTCCCCCTTGAAgggg < 1:2255799/35‑1 (MQ=255) aTCAGAATTTTTTTTCTTTTTCCCCCTTGAAgggg > 1:19719298/1‑35 (MQ=255) aTCAGAATTTTTTTTCTTTTTCCCCCTTGAAgggg > 1:173168/1‑35 (MQ=255) aTCAGAATTTTTTTTCTTTTTCCCCCTTGAAgggg < 1:17438767/35‑1 (MQ=255) tCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGc > 1:14907119/1‑35 (MQ=255) tCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGc > 1:7777618/1‑35 (MQ=255) cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCg > 1:20519249/1‑35 (MQ=255) cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCg > 1:19542803/1‑35 (MQ=255) cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCg > 1:2739170/1‑35 (MQ=255) cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCg < 1:19432972/35‑1 (MQ=255) cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCg > 1:18950484/1‑35 (MQ=255) cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCg > 1:13165364/1‑35 (MQ=255) cAGAATTTTTTTTCTTTTTCCCCATTGAAGGGGCg < 1:2642146/35‑1 (MQ=255) aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGa > 1:5396023/1‑35 (MQ=255) aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGa < 1:8761531/35‑1 (MQ=255) aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGa < 1:15120587/35‑1 (MQ=255) aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGa > 1:6579760/1‑35 (MQ=255) aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGa > 1:8060749/1‑35 (MQ=255) gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGaa < 1:4902371/35‑1 (MQ=255) gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGaa < 1:3552728/35‑1 (MQ=255) gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGaa > 1:5570052/1‑35 (MQ=255) gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGaa < 1:12258805/35‑1 (MQ=255) gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGaa < 1:1580798/35‑1 (MQ=255) aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGc > 1:13960346/1‑35 (MQ=255) aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGc > 1:13287114/1‑35 (MQ=255) aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGc < 1:540492/35‑1 (MQ=255) aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGc > 1:19297670/1‑35 (MQ=255) ttttttttCTTTTTCCCCCTTGAAGGGGCGAAGcc > 1:5108248/1‑35 (MQ=255) tttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCt < 1:16831506/35‑1 (MQ=255) tttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCt > 1:1925227/1‑35 (MQ=255) ttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTc > 1:5123066/1‑35 (MQ=255) ttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTc < 1:14716896/35‑1 (MQ=255) tttttctttttcCCCccgccattagcggcttcatt > 1:8649812‑M2/1‑15 (MQ=255) ttttctttttcCCCccgccattagcggcttcattt > 1:9172282‑M2/1‑14 (MQ=255) ttttctttttcCCCCTTGAAGGGGCGAAGCCTCAt < 1:8863419/35‑1 (MQ=255) ttttctttttcCCCCTTGAAGGGGCGAAGCCTCAt < 1:9810612/35‑1 (MQ=255) ttttctttttcCCCCTTGAAGGGGCGAAGCCTCAt < 1:15817957/35‑1 (MQ=255) tttctttttcCCCCTTGAAGGGGCGAAGCCTCATc < 1:18141594/35‑1 (MQ=255) tttctttttcCCCCTTGAAGGGGCGAAGCCTCATc > 1:15287745/1‑35 (MQ=255) gcttttttcCCccgccattagcggcttcatttttg > 1:8448551‑M2/2‑11 (MQ=255) ctttttcCCCCTTGAATGGGCGAAGCCTCATcccc > 1:4128963/1‑35 (MQ=255) ttttttCCCccgccattagcggcttcatttttgtg > 1:18774791‑M2/1‑9 (MQ=255) ttttttCCCccgccattagcggcttcatttttgtg > 1:13607276‑M2/1‑9 (MQ=255) tttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCa > 1:12454163/1‑35 (MQ=255) tgtttcccCccgccattagcggcttcatttttgtg > 1:5534186‑M2/3‑9 (MQ=255) ttttcCCCccgccattagcggcttcatttttgtgg > 1:8432535‑M2/1‑8 (MQ=255) ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCAt < 1:2480032/35‑1 (MQ=255) ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCAt > 1:17193381/1‑35 (MQ=255) ttttCCCccgccattagcggcttcatttttgtggc > 1:7830177‑M2/1‑7 (MQ=255) tttcCCCCTTGAGGGGGCGAAGCCTCATCCCCAtt < 1:12717274/35‑1 (MQ=255) tttcCCCCTTGAAGGGGCGAAGCCTCATCCCCAtt > 1:19998135/1‑35 (MQ=255) tttcCCCCTTGAAGGGGCGAAGCCTCATCCCCAtt > 1:18472888/1‑35 (MQ=255) tttcCCCCTGGAAGGGGCGAAGCCTCATCCCCAtt < 1:11543753/35‑1 (MQ=255) tttCCCccgccattagcggcttcatttttgtggct > 1:1693075‑M2/1‑6 (MQ=255) ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCAttt > 1:2838253/1‑35 (MQ=255) ttaccccTTGAAGGGGCGAAGCCTCATCCCCAttt < 1:7384901/32‑1 (MQ=255) tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTtc > 1:13466988/1‑35 (MQ=255) tcccccgccattagcggcttcatttttgtggctct > 1:14571760‑M2/2‑4 (MQ=255) tcccccgccattagcggcttcatttttgtggctct > 1:8868909‑M2/2‑4 (MQ=255) ccaccTTGAAGGGGCGAAGCCTCATCCCCATTtct < 1:9839334/32‑1 (MQ=255) cccccgccattagcggcttcatttttgtggctctg > 1:15319086‑M2/1‑3 (MQ=255) cccccgccattagcggcttcatttttgtggctctg > 1:10496118‑M2/1‑3 (MQ=255) ccccTTGAAGGGGCGAAGCCTCATCCCCATTtctc > 1:10673662/1‑35 (MQ=255) ccccTTGAAGGGGCGAAGCCTCATCCCCATTtctc > 1:16183773/1‑35 (MQ=255) ccccgccattagcggcttcatttttgtggctctgg > 1:58400‑M2/1‑2 (MQ=255) ccccgccattagcggcttcatttttgtggctctgg > 1:2863657‑M2/1‑2 (MQ=255) cccTTGAAGGGGCGAAGCCTCATCCCCATTTctct < 1:6781167/35‑1 (MQ=255) cccTTGAAGGGGCGAAGCCTCATCCCCATTTctct > 1:4556698/1‑35 (MQ=255) cccTTGAAGGGGCGAAGCCTCATCCCCATTTctct < 1:15807496/35‑1 (MQ=255) cccgccattagcggcttcatttttgtggctctggg > 1:3934002‑M2/1‑1 (MQ=255) ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTg < 1:3769724/35‑1 (MQ=255) ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTg > 1:2114371/1‑35 (MQ=255) ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTg > 1:16164944/1‑35 (MQ=255) ccTGGAAGGGGCGAAGCCTCATCCCCATTTCTCTg < 1:246313/35‑1 (MQ=255) | TTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTG > REL606/4349265‑4349333 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |