New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2556110 =67 (0.650)14 (0.170) 5/38 NT 14.7% coding (1060/1371 nt) xseA exodeoxyribonuclease VII large subunit
?REL606 3882315 = 110 (1.350)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

TTGCTGAATGCGCGTTTGCGCGCGATGAATCTTCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2556148‑2556110
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgGGGGGTTTTGTGG  >  REL606/3882315‑3882327
                                                    
TTGCTGAATGCGCGTTTGCGCGCGATGAATCTTCG                   >  1:18120234/1‑35
TTGCTGAATGCGCGTTTGCGCGCGATGAATCTTCG                   >  1:10225479/1‑35
TTGCTGAATGCGCGTTTGCGCGCGATGAATCTTCG                   >  1:938474/1‑35
TTGCTGAATGCGCGTTTGCGCGCGATGAATCTTCG                   >  1:17131942/1‑35
TTGCTGAATGCGCGTTTGCGCGCGATGAATCTTCG                   >  1:2691214/1‑35
TTGCTGAATGCGCGTTTGCGCGCGATGAATCTTCG                   >  1:7728872/1‑35
TTGCTGAATGCGCGTTTGCGCGCGATGAATCTTCG                   <  1:14712346/35‑1
 TGCTGAATGCGCGTTTGCGCGCGATGAATCTTCGG                  >  1:6144666/1‑35
 TGCTGAATGCGCGTTTGCGCGCGATGAATCTTCGG                  <  1:17219226/35‑1
 TGCTGAATGCGCGTTTGCGCGCGATGAATCTTCGG                  <  1:11787058/35‑1
 TGCTGAATGCGCGTTTGCGCGCGATGAATCTTCGG                  <  1:19448488/35‑1
 TGCTGAATGCGCGTTTGCGCGCGATGAATCTTCGG                  <  1:19953113/35‑1
 TGCTGAATGCGCGTTTGCGCGCGATGAATCTTCGG                  <  1:895633/35‑1
 TGCTGAATGCGCGTTTGCGCGCGATGAATCTTCGG                  >  1:15136362/1‑35
  GCTGAATGCGCGTTTGCGCGCGATGGATCTTCGGC                 <  1:1131961/35‑1
  GCTGAATGCGCGTTTGCGCGCGATGAATCTTCGGC                 >  1:8722782/1‑35
  GCTGAATGCGCGTTTGCGCGCGATGAATCTTCGGC                 <  1:2999981/35‑1
  GCTGAATGCGCGTTTGCGCGCGATGAATCTTCGGC                 <  1:12549383/35‑1
  GCTGAATGCGCGTTTGCGCGCGATGAATCTTCGGC                 >  1:12311360/1‑35
  GCTGAATGCGCGTTTGCGCGCGATGAATCTTCGGC                 >  1:10859314/1‑35
  GCTGAATGCGCGTTTGCGCGCGATGAATCTTCGGC                 >  1:3357484/1‑35
   CTGAATGCGCGTTTGCGCGCGATGAATCTTCGGCT                >  1:9020803/1‑35
   CTGAATGCGCGTTTGCGCGCGATGAATCTTCGGCT                >  1:2355228/1‑35
   CTGAATGCGCGTTTGCGCGCGATGAATCTTCGGCT                <  1:3527528/35‑1
   CTGAATGCGCGTTTGCGCGCGATGAATCTTCGGCT                >  1:10842175/1‑35
   CTGAATGCGCGTTTGCGCGCGATGAATCTTCGGCT                >  1:1761327/1‑35
    TGAATGCGCGTTTGCGCGCGATGAATCTTCGGCTG               <  1:4917651/35‑1
    TGAATGCGCGTTTGCGCGCGATGAATCTTCGGCTG               >  1:18707178/1‑35
    TGAATGCGCGTTTGCGCGCGATGAATCTTCGGCTG               <  1:16715338/35‑1
    TGAATGCGCGTTTGCGCGCGATGAATCTTCGGCTG               >  1:7039656/1‑35
    TGAATGCGCGTTTGCGCGCGATGAATCTTCGGCTG               >  1:14641322/1‑35
    TGAATGCGCGTTTGCGCGCGATGAATCTTCGGCTG               <  1:13926306/35‑1
    TGAATGCGCGTTTGCGCGCGATGAATCTTCGGCTG               <  1:9237465/35‑1
     GAATGCGCGTTTGCGCGCGATGAATCTTCGGCTGG              >  1:5327898/1‑35
     GAATGCGCGTTTGCGCGCGATGAATCTTCGGCTGG              >  1:4590025/1‑35
     GAATGCGCGTTTGCGCGCGATGAATCTTCGGCTGG              >  1:6208226/1‑35
     GAATGCGCGTTTGCGCGCGATGAATCTTCGGCTGG              >  1:9634216/1‑35
      AATGCGCGTTTGCGCGCGATGAATCTTCGGCTaga             >  1:5174014/1‑32
      AATGCGCGTTTGCGCGCGATGAATCTTCGGCTGGG             >  1:15460435/1‑35
      AATGCGCGTTTGCGCGCGATGAATCTTCGGCTGGG             >  1:19076644/1‑35
      AATGCGCGTTTGCGCGCGATGAATCTTCGGCTGGG             >  1:1128996/1‑35
      AATGCGCGTTTGCGCGCGATGAATCTTCGGATGGG             >  1:15140634/1‑35
       ATGCGCGTTTGCGCGCGATGAATCTTCGGCTGGGG            >  1:8934769/1‑35
       ATGCGCGTTTGCGCGCGATGAATCTTCGGCTGGGG            >  1:8563648/1‑35
       ATGCGCGTTTGCGCGCGATGAATCTTCGGCTGGGG            >  1:666022/1‑35
       ATGCGCGTTTGCGCGCGATGAATCTTCGGCTGGGG            >  1:5405107/1‑35
        TGCGCGTTTGCGCGCGATGAATCTTCGGCTGGGGG           >  1:6707010/1‑35
         GCGCGTTTGCGCGCGATGAATCTTCGGCTGGGGGG          >  1:17367152/1‑35
         GCGCGTTTGCGCGCGATGAATCTTCGGCTGGGGGG          >  1:3342057/1‑35
           GCGTTTGCGCGTGATGAATCTTCGGCTGGGGGGTT        >  1:19934631/1‑35
           GCGTTTGCGCGCGATGAATCTTCGGCTGGGGGGgt        >  1:4000037/1‑33
           GCGTTTGCGCGCGATGAATCTTCGGCTGGGGGGTT        >  1:14969844/1‑35
             GTTTGCGCGCGATGAATCTTCGGCTGGGGGTTTTT      >  1:584004/1‑35
             GTTTGCGCGCGATGAATCTTCGGCTGGGGGGTTTT      >  1:15434364/1‑35
             GTTTGCGCGCGATGAATCTTCGGCTGGGGGGGTTT      >  1:14820217/1‑35
              TTTGCGCGCGATGAATCTTCGGCTGGGGGGTTTgt     >  1:19018073/1‑33
              TTTGCGCGCGATGAATCTTCGGCTGGGGGGTTTTG     >  1:9339605/1‑35
              TTTGCGCGCGATGAATCTTCGGCTGGGGGGGTTTt     >  1:3633733/1‑34
               TTGCGCGCGATGAATCTTCGGCTGGGGGGTTTTtt    >  1:15486358/1‑33
               TTGCGCGCGATGAATCTTCGGCTGGGGGGTTTTtt    >  1:5852907/1‑33
               TTGCGCGCGATGAATCTTCGGCTGGGGGGTTTTGT    >  1:10147043/1‑35
                TGCGCGCGATGAATCTTCGGCTGGGGGGTTTTTTG   >  1:5779040/1‑35
                TGCGCGCGATGAATCTTCGGCTGGGGGGTTTTGct   >  1:13651604/1‑33
                 GCGCGCGATGAATCTTCGGCTGGGGGGTTTTTTGt  >  1:17362586/1‑34
                                                    
TTGCTGAATGCGCGTTTGCGCGCGATGAATCTTCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2556148‑2556110
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgGGGGGTTTTGTGG  >  REL606/3882315‑3882327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.