New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 177442943 (0.420)8 (0.090) 4/40 NT 14.3% coding (783/2388 nt) pheT phenylalanyl‑tRNA synthetase beta subunit
?REL606 = 2595910 60 (0.700)coding (551/1062 nt) yphC predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding

Only 100 of 148 total aligned reads displayed.

TTTCGCCAGCATCATCGCCATCATGCCGACCGGCCCCAGACCGACCACCAGCACGTTATCGCTGCCGGA  >  REL606/2595876‑2595944
                                  |                                  
tttCGCCAGCATCATCGCCATCATGCCGACCGGcc                                    <  1:14472012/35‑1 (MQ=255)
tttCGCCACCATCATCGCCATCATGCCGACCGGcc                                    <  1:8138685/35‑1 (MQ=255)
ttccGCCAGCATCATCGCCATCATGCCGACCGGcc                                    <  1:1474666/32‑1 (MQ=255)
nttCGCCAGCATCATCGCCATCATGCCGACCGGcc                                    >  1:17949968/2‑35 (MQ=255)
 ttCGCCAGCATCATCGCCATCATGCCGACCTGCCc                                   <  1:6381408‑M2/35‑2 (MQ=255)
 ttCGCCAGCATCATCGCCATCATGCCGACCGGCCc                                   <  1:14849992‑M2/35‑2 (MQ=255)
 ttCGCCAGCATCATCGCCATCATGCCGACCGGCCc                                   <  1:12168262‑M2/35‑2 (MQ=255)
 ttCGCCAGCATCATCGCCATCATGCCGACCGGCCc                                   >  1:5315485‑M2/1‑34 (MQ=255)
 ttCGCCAGCATCATCGCCATCATGCCGACCGGCCc                                   <  1:5283613‑M2/35‑2 (MQ=255)
   ccccAGCATAATCGCCATCATGCCGACCGGCCCCa                                 <  1:19101261/33‑1 (MQ=37)
   ccccAGCACCATCGCCATCATGCCGACCGGCCCCa                                 <  1:19762076/33‑1 (MQ=25)
   cGCCAGCATCATCGCCATCATGCCGACCGGCCcca                                 <  1:11533596‑M2/35‑4 (MQ=255)
   cGCCAGCATCATCGCCATCATGCCGACCGGCCcca                                 >  1:18159654‑M2/1‑32 (MQ=255)
   cGCCAGCATCATCGCCATCATGCCGACCGGCCcca                                 <  1:17601995‑M2/35‑4 (MQ=255)
    gCCAGCATCATCGCCATCATGCCGACCGGCCccag                                <  1:19877588‑M2/35‑5 (MQ=255)
    gCCAGCATCATCGCCATCATGCCGACCGGCCccag                                >  1:11973439‑M2/1‑31 (MQ=255)
    gCCAGCATCATCGCCATCATGCCGACCGGCCccag                                <  1:18869087‑M2/35‑5 (MQ=255)
    gCCAGCATCATCGCCATCATGCCGACCGGCCccag                                >  1:783797‑M2/1‑31 (MQ=255)
    gCCAGCATCATCGCCATCATGCCGACCGGCCccag                                <  1:15316427‑M2/35‑5 (MQ=255)
    gCCAGCATCATCGCCATCACGCCGACCGGCCccag                                <  1:11373628‑M2/35‑5 (MQ=255)
     ccAGCATCATCGCCATCATGCCGACCGGCCCCAga                               <  1:16850569/35‑1 (MQ=255)
     ccAGCATCATCGCCATCATGCAGACCGGCCCCAga                               <  1:7222293/35‑1 (MQ=255)
      cAGCATCATCGCCATCATGCCGACCGGCCCCAgac                              >  1:1508180/1‑35 (MQ=255)
      cAGCATCATCGCCATCATGCCGACCGGCCCCAgac                              >  1:14037485/1‑35 (MQ=255)
      cAGCATCATCGCCATCATGCCGACCGGCCCCAgac                              >  1:15941749/1‑35 (MQ=255)
      cAGCATCATCGCCATCATGCCGACCGGCCCCAgac                              <  1:12802036/35‑1 (MQ=255)
      cAGCATCATCGCCATCATGCCGACCGGCCCCAgac                              >  1:7604610/1‑35 (MQ=255)
       aGCATCATCGCCATCATGCCGACCGGCCCCAgacc                             >  1:18713040/1‑35 (MQ=255)
       aGCATCATCGCCATCATGCCGACCGGCCCCAgacc                             <  1:4418571/35‑1 (MQ=255)
       aGCATCATCGCCATCATGCCGACCGGCCCCAgacc                             <  1:431178/35‑1 (MQ=255)
       aGCATCATCGCCATCATGCCGACCGGCCCCAgacc                             >  1:8937700/1‑35 (MQ=255)
       aGCATCATCGCCATCATGCAGACCGGCCCCAgacc                             <  1:11713962/35‑1 (MQ=255)
         catcatCGCCATCATGCCGACCGGCCCCAgaccga                           >  1:15817553/1‑35 (MQ=255)
         catcatCGCCATCATGCCGACCGGCCCCAgaccga                           >  1:10223792/1‑35 (MQ=255)
          atcatcGCCATCATGCCGACCGGCCCCAgaccgac                          >  1:20336654/1‑35 (MQ=255)
          atcatcGCCATCATGCCGACCGGCCCCAgaccgac                          >  1:1403504/1‑35 (MQ=255)
           tcatcGCCATCATGCCGACCGGCCCCAgaccgacc                         >  1:14432274/1‑35 (MQ=255)
           gcatcGCCATCATGCCGACCGGCCCCAgaccgacc                         <  1:15390626/34‑1 (MQ=255)
            catcGCCATCATGCCGACCGGCCCCAGACCGacca                        <  1:10712135/35‑1 (MQ=255)
            catcGCCATCATGCCGACCGGCCCCAGACCGacca                        >  1:11534724/1‑35 (MQ=255)
            catcGCCATCATGCCGACCGGCCCCAGACCGacca                        <  1:13126025/35‑1 (MQ=255)
             atcGCCATCATGCCGACCGGCCCCAGACCGaccac                       >  1:19167626/1‑35 (MQ=255)
             atcGCCATCATGCCGACCGGCCCCAGACCGaccac                       <  1:16975363/35‑1 (MQ=255)
              tcGCCATCATGCCGACCGGCCCCAGACCGaccacc                      >  1:16498917/1‑35 (MQ=255)
              tcGCCATCATGCCGACCGGCCCCAGACCGaccacc                      >  1:1656883/1‑35 (MQ=255)
              tcGCCATCATGCCGACCGGCCCCAGACCGaccacc                      >  1:16008106/1‑35 (MQ=255)
              tcGCCATCATGCCGACCGGCCCCAGACCGaccacc                      <  1:13709336/35‑1 (MQ=255)
              gcGCCAGCATGCCGACCGGCCCCAGACCGaccacc                      <  1:16265339/34‑1 (MQ=255)
               cGCCATCATGCCGACCGGCCCCAGACCGAcgacca                     <  1:10333284/35‑1 (MQ=255)
               cGCCATCATGCCGACCGGCCCCAGACCGAccacca                     <  1:5598571/35‑1 (MQ=255)
                gCCATCATGCCGACCGGCCCCAGACCGACCACCAg                    >  1:14509788/1‑35 (MQ=255)
                gCCATCATGCCGACCGGCCCCAGACCGACCACCAg                    <  1:14393429/35‑1 (MQ=255)
                gCCATCATGCCGACCGGCCCCAGACCGACCACCAg                    >  1:7271699/1‑35 (MQ=255)
                   atcatGCCGACCGGCCCCAGACCGACCACCAGCAc                 >  1:13735685/1‑35 (MQ=255)
                   atcatGCCGACCGGCCCCAGACCGACCACCAGCAc                 >  1:4821487/1‑35 (MQ=255)
                    tcatGCCGACCGGCCCCAGACCGACCACCAGCACg                >  1:5266445/1‑35 (MQ=255)
                     catGCCGACCGGCCCCAGACCGACCACCAGCACGt               >  1:4094955/1‑35 (MQ=255)
                     catGCCGACCGGCCCCAGACCGACCACCAGCACGt               >  1:4910632/1‑35 (MQ=255)
                     catGCCGACCGGCCCCAGACCGACCACCAGCACGt               >  1:12532897/1‑35 (MQ=255)
                      atGCCGACCGGCCCCAGACCCACCACCAGCACGtt              >  1:469895/1‑35 (MQ=255)
                        gCCGACCGGCCCCAGCCCGCCCACCAGCACGTTAt            <  1:2923724/35‑1 (MQ=37)
                        gCCGACCGGCCCCAGACCGACCACCAGCACGtaga            >  1:7007187/1‑32 (MQ=255)
                        gCCGACCGGCCCCAGACCGACCACCAGCACGTTAt            >  1:10887368/1‑35 (MQ=255)
                        gCCGACCGGCCCCAGACCGACCACCAGCACGTTAt            >  1:3856585/1‑35 (MQ=255)
                        cccgACCGGCCccagccgatgcacgctttcgataa            >  1:11291789‑M2/2‑11 (MQ=255)
                         ccGACCGGCCccagccgatgcacgctttcgataaa           >  1:4390020‑M2/1‑10 (MQ=255)
                         ccGACCGGCCCCAGCCCGCCCACCAGCACGTTATc           <  1:17968264/35‑1 (MQ=37)
                         ccGACCGGCCCCAGACCGACCACCAGCACGTTATc           >  1:6194814/1‑35 (MQ=255)
                          cGACCGGCCccagccgatgcacgctttcgataaag          >  1:8516287‑M2/1‑9 (MQ=255)
                           gcccGGCCCCAGACAGACCACCAGCACGTTATCGc         <  1:7441408/33‑1 (MQ=37)
                           gACCGGCCCCAGCCCGCCCACCAGCACGTTATCGc         <  1:6234935/35‑1 (MQ=37)
                           gACCGGCCCCAGACCGACCACCAGCACGTTATCGc         >  1:9365472/1‑35 (MQ=255)
                           gACCGGCCCCAGACCGACCACCAGCACGTTATCGc         >  1:15929251/1‑35 (MQ=255)
                            ccccGCCccagccgatgcacgctttcgataaagat        >  1:6852737‑M2/2‑7 (MQ=255)
                            aCCGGGCccagccgatgcacgctttcgataaagat        >  1:12593048‑M2/1‑7 (MQ=255)
                            aCCGGCCCCAGACCGACCACCAGCACGTTATCGCt        >  1:636729/1‑35 (MQ=255)
                             ccGGCCCCAGACCGACCACCAGCACGTTATCTCTg       >  1:11134808/1‑35 (MQ=255)
                             ccCGCCccagccgatgcacgctttcgataaagatc       >  1:1208349‑M2/1‑6 (MQ=255)
                              cGGCCccagccgatgcacgctttcgataaagatcg      >  1:3966051‑M2/1‑5 (MQ=255)
                              cGGCCCCAGACCGACCACCAGCACGTTATCGCttc      >  1:18694060/1‑33 (MQ=255)
                              cGGCCCCAGACCGACCACCAGCACGTTATCGCTGc      >  1:1204356/1‑35 (MQ=255)
                               ggCCccagccgatgcacgctttcgataaagatcgc     >  1:15012455‑M2/1‑4 (MQ=255)
                               ggCCCCAGACCGACCACCAGCACGTTATCGCTGcc     >  1:19369989/1‑35 (MQ=255)
                               ggCCCCAGACCGACCACCAGCACGTTATCGCTGcc     >  1:19570914/1‑35 (MQ=255)
                               gcccccAGCCCGCCCACCAGCACGTTATCGCTGcc     <  1:3306990/33‑1 (MQ=21)
                               cgcCccagccgatgcacgctttcgataaagatcgc     >  1:19033125‑M2/2‑4 (MQ=255)
                               cgcCccagccgatgcacgctttcgataaagatcgc     >  1:12213351‑M2/2‑4 (MQ=255)
                               cgcCccagccgatgcacgctttcgataaagatcgc     >  1:5716693‑M2/2‑4 (MQ=255)
                                ggcccagccgatgcacgctttcgataaagatcgca    >  1:10067001‑M2/3‑3 (MQ=255)
                                gCCCCAGACCGACCACCAGCACGTTATCGCTGCCg    >  1:11085610/1‑35 (MQ=255)
                                gCCCCAGACCGACCACCAGCACGTTATCGCTGCCg    >  1:4268380/1‑35 (MQ=255)
                                cccccagccgatgcacgctttcgataaagatcgca    >  1:16762365‑M2/2‑3 (MQ=255)
                                 gcccagccgatgcacgctttcgataaagatcgcat   >  1:14953498‑M2/2‑2 (MQ=255)
                                  cccagccgatgcacgctttcgataaagatcgcatt  >  1:15122842‑M2/1‑1 (MQ=255)
                                  cccagccgatgcacgctttcgataaagatcgcatt  >  1:14161753‑M2/1‑1 (MQ=255)
                                  cccagccgatgcacgctttcgataaagatcgcatt  >  1:7919196‑M2/1‑1 (MQ=255)
                                  cccagccgatgcacgctttcgataaagatcgcatt  >  1:20276736‑M2/1‑1 (MQ=255)
                                  cccAGACCGACCACCAGCACGTTATCGCTGcctca  >  1:20262607/1‑32 (MQ=255)
                                  cccAGACCGACCACCAGCACGTTATCGCTGCCGGa  >  1:15867823/1‑35 (MQ=255)
                                  cccAGACCGACCACCAGCACGTTATCGCTGCCGGa  >  1:5692648/1‑35 (MQ=255)
                                  |                                  
TTTCGCCAGCATCATCGCCATCATGCCGACCGGCCCCAGACCGACCACCAGCACGTTATCGCTGCCGGA  >  REL606/2595876‑2595944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.