New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2216192 =62 (0.600)25 (0.310) 6/38 NT 27.2% coding (1142/1182 nt) setB lactose/glucose efflux system
?REL606 = 3911582 85 (1.040)coding (218/1551 nt) yifB predicted bifunctional enzyme and transcriptional regulator

AAACATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2216230‑2216192
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaAAAAAATCACCATCAACCTGGCTCCAGCTGATCT  <  REL606/3911582‑3911549
                                                                         
AAACATCTTTAATCCGCAGTAAGCAAAACAGAGTG                                        <  1:16909315/35‑1
AAACATCTTTAATCCGCAGTAAGCAAAACAGAGTG                                        <  1:9588838/35‑1
AAACATCTTTAATCCGCAGTAAGCAAAACAGAGTG                                        <  1:18030866/35‑1
AAACATCTTTAATCCGCAGTAAGCAAAACAGAGTG                                        >  1:13203944/1‑35
 AACATCTTTAATCCGCAGTAAGCAAAACAGAGTGG                                       >  1:18474066/1‑35
 AACATCTTTAATCCGCAGTAAGCAAAACAGAGTGG                                       <  1:522112/35‑1
 AACATCTTTAATCCGCAGTAAGCAAAACAGAGTGG                                       >  1:1918479/1‑35
 AACATCTTTAATCCGCAGTAAGCAAAACAGAGTGG                                       <  1:15851274/35‑1
  ACATCTTTAATCCGCAGTAAGCAAAACAGAGTGGC                                      <  1:7958815/35‑1
  ACATCTTTAATCCGCAGTAAGCAAAACAGAGTGGC                                      <  1:13946789/35‑1
   CATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCG                                     >  1:20027035/1‑35
   CATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCG                                     <  1:14094510/35‑1
   CATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCG                                     <  1:8063972/35‑1
   CATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCG                                     >  1:7058862/1‑35
   CATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCG                                     <  1:19683063/35‑1
    ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA                                    <  1:15679635/35‑1
    ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA                                    >  1:19886845/1‑35
    ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA                                    >  1:14973679/1‑35
    ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA                                    <  1:20131815/35‑1
    ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA                                    <  1:7128098/35‑1
    ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA                                    <  1:2880224/35‑1
    ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA                                    >  1:11984658/1‑35
    ATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA                                    >  1:18539506/1‑35
     TCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGAA                                   >  1:17200352/1‑35
     TCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGAA                                   >  1:19235242/1‑35
     TCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGAA                                   >  1:8113712/1‑35
     TCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGAA                                   >  1:2383593/1‑35
       TTTAATCCGCAGTAAGCAAAACAGAGTGGCGAAAA                                 >  1:6573019/1‑35
        TTAATCCGCAGTAAGCAAAACAGAGTGGCGAAAAA                                >  1:5869292/1‑35
         TAATCCGCAGTAAGCAAAACAGAGTGGCGAAAAtt                               >  1:3961997/1‑33
         TAATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAA                               >  1:17257692/1‑35
         TAATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAA                               >  1:7332158/1‑35
          AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA                              >  1:3697724/1‑35
          AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA                              >  1:6042406/1‑35
          AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA                              >  1:17928626/1‑35
          AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA                              >  1:12005343/1‑35
          AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA                              >  1:1707813/1‑35
          AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA                              >  1:12332625/1‑35
          AATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAA                              >  1:13833679/1‑35
           ATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAAa                             >  1:4482243/1‑34
           ATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAAa                             >  1:13095058/1‑34
           ATCCGCAGTAAGCAAAACAGAGTGGCGAAAAAAAT                             >  1:2931501/1‑35
             CCGCAGTAAGCAAAACAGAGTGGCGAAAAAACTCc                           >  1:558547/1‑34
             CCGCAGTAAGCAAAACAGAGTGGCGAAAAAAAACA                           >  1:3042381/1‑35
             CCGCAGTAAGCAAAACAGAGTGGCGAAAAAAAACA                           >  1:2362885/1‑35
              CGCAGTAAGCAAAACAGAGTGGCGAAAAAAATCAa                          >  1:10836002/1‑34
              CGCAGTAAGCAAAACAGAGTGGCGAAAAAAAACAC                          >  1:5396241/1‑35
              CGCAGTAAGCAAAACAGAGTGGCGAAAAAAAACAC                          >  1:4687927/1‑35
               GCAGTAAGCAAAACAGAGTGGCGAAAAAAATAACC                         >  1:13791963/1‑35
               GCAGTAAGCAAAACAGAGTGGCGAAAAAAAACACC                         >  1:5308582/1‑35
               GCAGTAAGCAAAACAGAGTGGCGAAAAAAAACACC                         >  1:13756707/1‑35
               GCAGTAAGCAAAACAGAGTGGCGAAAAAAAACACC                         >  1:5354516/1‑35
                CAGTAAGCAAAACAGAGTGGCGAAAAAAATTACCA                        >  1:996692/1‑35
                CAGTAAGCAAAACAGAGTGGCGAAAAAAATCACCA                        >  1:8035095/1‑35
                 AGTAAGCAAAACAGAGTGGCGAAAAACATCACCAa                       >  1:1376070/1‑34
                 AGTAAGCAAAACAGAGTGGCGAAAAAAATAACCAc                       >  1:4978654/1‑34
                 AGTAAGCAAAACAGAGTGGCGAAAAAAATAACCAc                       >  1:5623273/1‑34
                                  GGCGAAAAAAATCACCATCAACCTGGCTCCAGCTG      >  1:9277491/1‑35
                                  GGCGAAAAAAATCACCATCAACCTGGCTCCAGCTG      <  1:8585542/35‑1
                                  GGCGAAAAAAATCACCATCAACCTGGCTCCAGCTG      >  1:15505987/1‑35
                                  GGCGAAAAAAATCACCATCAACCTGGCTCCAGCTG      >  1:7198397/1‑35
                                  GGCGAAAAAAATCACCATCAACCTGGCTCCAGCTG      >  1:19561998/1‑35
                                  GGCGAAAAAAATCACCATCAACCTGGCTCCAGCTG      <  1:6427056/35‑1
                                   GCGAAAAAAATCACCATCGACCTGGCTCCAGCTGA     >  1:12200317/1‑35
                                   GCGAAAAAAATCACCATCAACCTGGCTCCAGCTGA     >  1:5919155/1‑35
                                   GCGAAAAAAATCACCATCAACCTGGCTCCAGCTGA     >  1:2312938/1‑35
                                   GCGAAAAAAATCACAATCAACCTGGCTCCAGCTGA     <  1:16643655/35‑1
                                    CGAAAAAAATCACCATCAACCTGGCTCCAGCTGAT    >  1:4362125/1‑35
                                    CGAAAAAAATCACCATCAACCTGGCTCCAGCTGAT    <  1:7322589/35‑1
                                    CGAAAAAAATCACCATCAACCTGGCTCCAGCTGAT    <  1:18435123/35‑1
                                    CGAAAAAAATCACCATCAACCTGGCTCCAGCTGAT    <  1:17937059/35‑1
                                     GAAAAAAATCACCATCAACCTGGCTCCAGCTGATC   >  1:797215/1‑35
                                     GAAAAAAATCACCATCAACCTGGCTCCAGCTGATC   >  1:12297785/1‑35
                                     GAAAAAAATCACCATCAACCTGGCTCCAGCTGATC   <  1:14722426/35‑1
                                     GAAAAAAATCACCATCAACCTGGCTCCAGCTGATC   <  1:8530959/35‑1
                                     GAAAAAAATCACCATCAACCTGGCTCCAGATGATC   <  1:18204689/35‑1
                                      AAAAAAATCGCCATCAACCTGGCTCCAGCTGATCT  <  1:19773184/35‑1
                                      AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT  >  1:10695383/1‑35
                                      AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT  <  1:964487/35‑1
                                      AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT  <  1:12313113/35‑1
                                      AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT  >  1:14402591/1‑35
                                      AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT  <  1:8050893/35‑1
                                      AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT  >  1:3169764/1‑35
                                      AAAAAAATCACCATCAACCTGGCTCCAGCTGATCT  <  1:6011967/35‑1
                                                                         
AAACATCTTTAATCCGCAGTAAGCAAAACAGAGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2216230‑2216192
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaAAAAAATCACCATCAACCTGGCTCCAGCTGATCT  <  REL606/3911582‑3911549

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.