Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 546,191 IS1 (+) +9 bp 100% coding (346‑354/384 nt) ybcQ → predicted antitermination protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 546191 =0 (0.000)77 (0.780) 35/46 NT 100% coding (346/384 nt) ybcQ predicted antitermination protein
?REL606 546932 = NA (NA)noncoding (768/768 nt) IS1 repeat region
* ? REL606 = 5461990 (0.000)125 (1.220) 42/48 NT 100% coding (354/384 nt) ybcQ predicted antitermination protein
?REL606 = 547699 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 275 total aligned reads displayed.

TAGAGTTATTAACAACGATATCCATCTCTAACCGg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/546224‑546191
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  REL606/546932‑546966
                                                                     
TAGAGTTATTAACAACGATATCCATCTCTAACCGG                                    >  1:5297217/1‑35
  GAGTTATTAACAAAGATATCCATCTCTAACCGGGT                                  <  1:7397293/35‑1
   AGTTATTAACAACGATATCCATCTCTAACCGGGTA                                 >  1:8758261/1‑35
    GTTATTAACAACGATATCCATCTCTAACCGGGTAA                                <  1:8819139/35‑1
    GTTATTAACAACGATATCCATCTCTAACCGGGTAA                                >  1:14730210/1‑35
    GTTATTAACAACGATATCCATCTCTAACCGGGTAA                                <  1:18338568/35‑1
    GTTATTAACAACGATATCCATCTCTAACCGGGTAA                                <  1:20360327/35‑1
     TTATTAACAACGATATCCATCTCTAACCGGGTAAT                               >  1:17687054/1‑35
       ATTAACAACGATATCCATCTCTAACCGGGTACTGA                             >  1:12414211/1‑35
        TTAACAACGATATCCATCTCTAACCTGGTAATGAC                            >  1:9147695/1‑35
         TAACAACGATATCCATCTCTAACCGGGTAATGACT                           <  1:1475431/35‑1
         TAACAACGATATCCATCTCTAACCGGGTAATGACT                           >  1:8920435/1‑35
         TAACAACGATATCCATCTCTAACCGGGTAATGACT                           <  1:1200272/35‑1
            CAACGATATCCATCTCTAACCGGGTAATGACTCCA                        >  1:8424670/1‑35
            CAACGATATCCATCTCTAACCGGGTAATGACTCCA                        >  1:19756346/1‑35
             AACGATATCCATCTCTAACCGGGTAATGACTCCAA                       >  1:16145761/1‑35
             AACGATATCCATCTCTAACCGGGTAATGACTCCAA                       >  1:4776112/1‑35
              ACGATATCCATCTCTAACCGGGTAATGACTCCAAC                      >  1:657186/1‑35
               CGATATCCATCTCTAACCGGGTAATGACTCCAACT                     >  1:4494967/1‑35
               CGATATCCATCTCTAACCGGGTAATGACTCCAACT                     >  1:13876916/1‑35
                GATATCCATCTCTAACCGGGTAATGACTCCAACTT                    <  1:19277568/35‑1
                GATATCCATCTCTAACCGGGTAATGACTCCAACTT                    >  1:11203898/1‑35
                 ATATCCATCTCTAACCGGGTAATGACTCCAACTTA                   <  1:12598689/35‑1
                 ATATCCATCTCTAACCGGGTAATGACTCCAACTTA                   >  1:5645197/1‑35
                 ATATCCATCTCTAACCGGGTAATGACTCCAACTTA                   >  1:16994319/1‑35
                 ATATCCATCTCTAACCGGGTAATGACTCCAACTTA                   >  1:9500860/1‑35
                   ATCCATCTCTAACCGGGTAATGACTCCAACTTATT                 <  1:9886753/35‑1
                   ATCCATCTCTAACCGGGTAATGACTCCAACTTATT                 <  1:13187458/35‑1
                   ATCCATCTCTAACCGGGTAATGACTCCAACTTATT                 <  1:11606596/35‑1
                    TCCATCTCTAACCGGGTAATGACTCCAACTTATTG                >  1:16824568/1‑35
                       ATCTCTAACCGGGTAATGACTCCAACTTATTGATA             >  1:19796677/1‑35
                       ATCTCTAACCGGGTAATGACTCCAACTTATTGATA             >  1:2340821/1‑35
                       ATCTCTAACCGGGTAATGACTCCAACTTATTGATA             >  1:13733046/1‑35
                        TCTCTAACCGGGTAATGACTCCAACTTATTGATAG            <  1:12095817/35‑1
                         CTCTAACCGGGTAATGACTCCAACTTATTGATAGN           <  1:15070322/35‑1
                          TCTAACCGGGTAATGACTCCAACTTATTGATAGTG          >  1:19906259/1‑35
                          TCTAACCGGGTAATGACTCCAACTTATTGATAGTG          <  1:14416589/35‑1
                          TCTAACCGGGTAATGACTCCAACTTATTGATAGTG          <  1:17121499/35‑1
                            TAACCGGGTAATGACTCCAACTTATTGATAGTGTT        <  1:10906815/35‑1
                              ACCGGGTAATGACTCCAACTTATTGATAGTGTTTT      >  1:14201348/1‑35
                               CCGGGTAATGACTCCAACTTATTGATAGTGTTTTA     <  1:8296474/35‑1
                               CCGGGTAATGACTCCAACTTATTGATAGTGTTTTA     >  1:2170684/1‑35
                                CGGGTAATGACTCCAACTTATTGATAGTGTTTTAT    >  1:5878417/1‑35
                                CGGGTAATGACTCCAACTTATTGATAGTGTTTTAT    >  1:6956652/1‑35
                                CGGGTAATGACTCCAACTTATTGATAGTGTTTTAT    <  1:7697594/35‑1
                                CGGGTAATGACTCCAACTTATTGATAGTGTTTTAT    >  1:7888428/1‑35
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   <  1:11792484/35‑1
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   <  1:558725/35‑1
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   >  1:7066246/1‑35
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   >  1:4393588/1‑35
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   >  1:288870/1‑35
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   >  1:12971504/1‑35
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   >  1:20064657/1‑35
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   <  1:10862833/35‑1
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   <  1:1017939/35‑1
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   <  1:10056404/35‑1
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   <  1:15230426/35‑1
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   <  1:1943077/35‑1
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   >  1:17191975/1‑35
                                 GGGTAATGACTCCAACTTATTGATAGTGTTTTATG   <  1:1584871/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:16953103/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:16906229/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:16521049/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:728876/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:11444829/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:16417486/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:7822368/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:16272553/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:8087989/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:15916631/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:11006076/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:8538908/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:10942147/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:15703891/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:10740180/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:9403256/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:15479894/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:9633344/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:9765879/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:19580747/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:19541826/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:20204969/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:20596405/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:18853789/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:18742806/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:3273336/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:355609/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:3787942/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:4214318/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:18693883/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:12165912/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:5068640/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:18517852/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:18041623/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:17565758/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:5737716/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  1:6018892/1‑35
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  1:6342821/35‑1
                                  GGTAATGACTCCAACTTATTGATAGTGTTTTATGN  <  1:12253216/35‑1
                                  GGTAATGACTCAAACTTATTGATAGTGTTTTATGT  <  1:13598921/35‑1
                                                                     
TAGAGTTATTAACAACGATATCCATCTCTAACCGg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/546224‑546191
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  REL606/546932‑546966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.