New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3656754 =92 (0.900)4 (0.070) 3/28 NT 7.1% coding (410/996 nt) yiaH conserved inner membrane protein
?REL606 = 4045305 51 (0.850)coding (165/1407 nt) yihP predicted transporter

Only 100 of 188 total aligned reads displayed.

GTGATTTATCTGGTTTCACCGCTGATTCAGGTGAAGAACGTCGGCGGAAAAATGTTGCTGGTACTAATG  >  REL606/3656720‑3656788
                                  |                                  
gTGATTTATCTGGTTTCACCGCTGATTCAGGTgaa                                    >  1:8850728/1‑35 (MQ=255)
aaagataatgccgccataggtgcctggcagcccca                                    <  1:16584042‑M1/1‑1 (MQ=255)
aaagataatgccgccataggtgcctggcagcccca                                    <  1:324298‑M1/1‑1 (MQ=255)
aaagataatgccgccataggtgcctggcagcccca                                    <  1:6701251‑M1/1‑1 (MQ=255)
 aagataatgccgccataggtgcctggcagccccAg                                   <  1:10948748‑M1/2‑1 (MQ=255)
 aagataatgccgccataggtgcctggcagccccAg                                   <  1:736012‑M1/2‑1 (MQ=255)
  gATTTATCTGGTTTCACCGCTGATTCAGGTgaaga                                  >  1:14220306/1‑35 (MQ=255)
  gATTTATCTGGTTTCACCGCTGATTCAGGTgaaga                                  >  1:11354576/1‑35 (MQ=255)
  agataatgccgccataggtgcctggcagccccAGa                                  <  1:11462184‑M1/3‑1 (MQ=255)
  agataatgccgccataggtgcctggcagccccAGa                                  <  1:11542982‑M1/3‑1 (MQ=255)
    tttTTCTGTTTCCCCCGCTGATTCAGGTGAAGAAc                                <  1:17836689/35‑1 (MQ=19)
    tttATCTGGTTCCCCCGCTGATTCAGGTGAAGAAc                                <  1:564510/35‑1 (MQ=37)
    tttATCTGGTTCCCCCGCTGATTCAGGTGAAGAAc                                <  1:16835363/35‑1 (MQ=37)
    ataatgccgccataggtgccttgcagccccAGAAc                                <  1:12252997‑M1/5‑1 (MQ=255)
    ataatgccgccataggtgcctggcagccccAGAAc                                <  1:15830959‑M1/5‑1 (MQ=255)
     ttttCTGGTTCCCCCGCTGATTCAGGTGAAGAACg                               <  1:19223412/32‑1 (MQ=25)
     ttATCTGGTTTCACCGCTGATTCAGGTGAAGAACg                               >  1:17083330/1‑35 (MQ=255)
     taatgccgccataggtgcctggcagccccAGAACg                               <  1:2098833‑M1/6‑1 (MQ=255)
      tATCTGTTTCCCCCGCTGATTCAGGTGAAGAACGt                              <  1:632152/35‑1 (MQ=25)
      aatgccgccataggtgcctggcagccccAGAACGt                              <  1:16041242‑M1/7‑1 (MQ=255)
       gccccgccataggtgcctggcagccccAGAACGTc                             >  1:5120442‑M1/28‑35 (MQ=255)
       cccccgccataggtgcctggcagccccAGAACGTc                             >  1:4068314‑M1/28‑35 (MQ=255)
       atgccgccataggtgcctggcagccccAGAACGTc                             <  1:19362577‑M1/8‑1 (MQ=255)
       atgccgccataggtgcctggcagccccAGAACGTc                             <  1:19506456‑M1/8‑1 (MQ=255)
       atgccgccataggtgcctggcagccccAGAACGTc                             <  1:13414611‑M1/8‑1 (MQ=255)
       atgccgccataggtgcctggcagccccAGAACGTc                             <  1:11563066‑M1/8‑1 (MQ=255)
       atgccgccataggtgcctggcagccccAGAACGTc                             <  1:9268650‑M1/8‑1 (MQ=255)
       aTCTGTTTCCCCCGCTGATTCAGGTGAAGAACGTc                             <  1:19729905/35‑1 (MQ=25)
       aTCTGTTTCCCCCGCTGATTCAGGTGAAGAACGTc                             <  1:14403849/35‑1 (MQ=25)
       aTCTGGTTTCACCGCTGATTCAGGTGAAGAACGTc                             >  1:20244160/1‑35 (MQ=255)
        tgccgccataggtgcctggcagccccAGAACGTcg                            <  1:6172956‑M1/9‑1 (MQ=255)
        tgccgccataggtgcctggcagccccAGAACGTcg                            <  1:828138‑M1/9‑1 (MQ=255)
        tCTGGTTTCACCGCTTATTCAGGTGAAGAACGTcg                            >  1:3859746/1‑35 (MQ=255)
        tCTGGTTTCACCGCTGATTCAGGTGAAGAACGTcg                            >  1:16091066/1‑35 (MQ=255)
        ccccgccataggtgcctggcagccccAGAACGTcg                            >  1:7387351‑M1/27‑35 (MQ=255)
         cccgccataggtgcctggcagccccAGAACGTcgg                           >  1:18272024‑M1/26‑35 (MQ=255)
         cTGGTTTCACCGCTGATTCAGGTGAAGAACGTcgg                           >  1:11752566/1‑35 (MQ=255)
         cTGGTTTCACCGCTGATTCAGGTGAAGAACGTcgg                           >  1:9068842/1‑35 (MQ=255)
          tGGTTTCCCAGCTGATTCAGGTGAAGAACGTcggc                          <  1:16838574/35‑1 (MQ=37)
          tGGTTTCACCGCTGATTCAGGTGAAGAACGTcggc                          >  1:5710000/1‑35 (MQ=255)
           ggTTTCACCGCTGATTCAGGTGAAGAACGTcggcg                         >  1:12997451/1‑35 (MQ=255)
           ggTTTCACCGCTGATTCAGGTGAAGAACGTcggcg                         >  1:17202701/1‑35 (MQ=255)
           ggTTTCACCGCTGATTCAGGTGAAGAACGTcggcg                         >  1:14412798/1‑35 (MQ=255)
           cgccataggtgcctggcagccccAGAACgtcgggg                         <  1:2699706‑M1/12‑3 (MQ=255)
            gccataggtgcctggcagccccAGAAcgtcggggt                        <  1:5760073‑M1/13‑4 (MQ=255)
            gTTTCACCGCTGATTCAGGTGAAGAACGTcggcgg                        >  1:20583992/1‑35 (MQ=255)
             tttCACCGCTGATTCAGGTGAAGAACGTCGGCGGa                       >  1:15176627/1‑35 (MQ=255)
              ttCACCGCTGATTCAGGTGAAGAACGTcggcggga                      >  1:16180854/1‑33 (MQ=255)
              tccACCGCTGATTCAGGTGAAGAACGTCGGCGGaa                      <  1:1217434/33‑1 (MQ=255)
                taggtgcctggcagccccAGAACGTCGGGGGaaaa                    <  1:7237962‑M1/17‑1 (MQ=255)
                ccccGCTGATTCAGGTGAAGAACGTCGGCGGaaaa                    <  1:13496855/33‑1 (MQ=255)
                ccccGCTGATTCAGGTGAAGAACGTCGGCGGaaaa                    <  1:16328137/33‑1 (MQ=255)
                cACCGCTGATTCAGGTGAAGAACGTCGGCGGgaaa                    >  1:15585429/1‑35 (MQ=255)
                 aCCGCTGATTCAGGTGAAGAACGTCGGCGGgaaaa                   >  1:2909295/1‑35 (MQ=255)
                 aCCGCTGATTCAGGTGAAGAACGTCGGCGGaaaaa                   >  1:18513326/1‑35 (MQ=255)
                  ccGCTGATTCAGGTGAAGAACGTCGGCGGGAAAAt                  >  1:11206470/1‑35 (MQ=255)
                  ccGCTGATTCAGGTGAAGAACGTCGGCGGAAAAAt                  <  1:10640604/35‑1 (MQ=255)
                  ccGCTGATTCAGGTGAAGAACGTCGGCGGAAAAAt                  <  1:6282422/35‑1 (MQ=255)
                    gCTGATTCAGGTGAAGAACGTCGGCGGGAAAATGt                >  1:311676/1‑35 (MQ=255)
                    gCTGATTCAGGTGAAGAACGTCGGCGGGAAAATGt                >  1:20133830/1‑35 (MQ=255)
                    gCTGATTCAGGTGAAGAACGTCGGCGGGAAAATGt                >  1:1485828/1‑35 (MQ=255)
                    gCTGATTCAGGTGAAGAACGTCGGCGGAAAAATGt                <  1:3969697/35‑1 (MQ=255)
                    gCTGATTCAGGTGAAGAACGTCGGCGGAAAAATGt                >  1:14188014/1‑35 (MQ=255)
                    gCTGATTCAGGTGAAGAACGTCGGCGGAAAAATGt                >  1:19143867/1‑35 (MQ=255)
                    gCTGATTCAGGTGAAGAACGTCGGCGGAAAAATGt                <  1:16422779/35‑1 (MQ=255)
                     cTGATTCAGGTGAAGAACGTCGGCGGAAAAATGtt               >  1:4235824/1‑35 (MQ=255)
                     cTGATTCAGGTGAAGAACGTCGGCGGAAAAATGtt               >  1:4280552/1‑35 (MQ=255)
                     cTGATTCAGGTGAAGAACGTCGGCGGAAAAATGtt               >  1:10043368/1‑35 (MQ=255)
                      tGATTCAGGTGAAGAGCGTCGGCGGAAAAATGTTg              <  1:20535260/35‑1 (MQ=255)
                      tGATTCAGGTGAAGAACGTCGGCGGACAAATGTTg              >  1:15763370/1‑35 (MQ=255)
                      tGATTCAGGTGAAGAACGTCGGCGGAAAAATGTTg              >  1:8494978/1‑35 (MQ=255)
                      tGATTCAGGTGAAGAACGTCGGCGGAAAAATGTTg              >  1:16782946/1‑35 (MQ=255)
                      tGATTCAGGTGAAGAACGTCGGCGGAAAAATGTTg              >  1:12715848/1‑35 (MQ=255)
                       gATTCAGGTGAAGAACGTCGGCGGAAAAATGTTGc             <  1:8629616/35‑1 (MQ=255)
                       gATTCAGGTGAAGAACGTCGGCGGAAAAATGTTGc             >  1:10807674/1‑35 (MQ=255)
                       gATTCAGGTGAAGAACGTCGGCGGAAAAATGTTGc             >  1:8041963/1‑35 (MQ=255)
                       gATTCAGGTGAAGAACGTCGGCGGAAAAATGTTGc             <  1:5014885/35‑1 (MQ=255)
                       gATTCAGGTGAAGAACGTCGGCGGAAAAATGTTGc             >  1:6344421/1‑35 (MQ=255)
                        aTTCAGGTGAAGAACGTCGGCGGAAAAATGTTGCt            >  1:2604147/1‑35 (MQ=255)
                        aTTCAGGTGAAGAACGTCGGCGGAAAAATGTTGCt            <  1:10978119/35‑1 (MQ=255)
                        aTTCAGGTGAAGAACGTCGGCGGAAAAATGTTGCt            >  1:11888365/1‑35 (MQ=255)
                         ttCAGGTGAAGAACGTCGGCGGGAAAATGTTGCTg           >  1:6914698/1‑35 (MQ=255)
                         ttCAGGTGAAGAACGTCGGCGGAAAAATGTTGCTg           <  1:3086947/35‑1 (MQ=255)
                          tCAGGTGAAGAACGTCGGCGGAAAAATGTTGCTgg          <  1:15999181/35‑1 (MQ=255)
                          tCAGGTGAAGAACGTCGGCGGAAAAATGTTGCTgg          <  1:20568036/35‑1 (MQ=255)
                          tCAGGTGAAGAACGTCGGAGGAAAAATGTTGCTgg          <  1:8235966/35‑1 (MQ=255)
                            aGGTGAAGAACGTCGGCGGAAAAATGTTGCTGGTa        <  1:11629085/35‑1 (MQ=255)
                             ggTGAAGAACGTCGGCGGAAAAATGTTGCTGGTAc       <  1:18913563/35‑1 (MQ=255)
                              gTGAAGAACGTCGGCGGAAAAATGTTGCTGGTACt      <  1:10098428/35‑1 (MQ=255)
                              gTGAAGAACGTCGGCGGAAAAATGTTGCTGGTACt      <  1:5263558/35‑1 (MQ=255)
                              gTGAAGAACGTCGGCGGAAAAATGTTGATGGTACt      <  1:18106265/35‑1 (MQ=255)
                               tGAAGAACGTCGGCGGAAAAATGTTGCTGGTACTa     <  1:10441816/35‑1 (MQ=255)
                                gaagaaCGTCGGCGGAAAAATGTTGCTGGTACTaa    <  1:9636172/35‑1 (MQ=255)
                                gaagaaCGTCGGCGGAAAAATGTTGCTGGTACTaa    <  1:1984639/35‑1 (MQ=255)
                                gaagaaCGTCGGCGGAAAAATGTTGCTGGTACTaa    >  1:778781/1‑35 (MQ=255)
                                gaagaaCGTCGGCGGAAAAATGTTGCTGGTACTaa    <  1:13761883/35‑1 (MQ=255)
                                 aagaaCGTCGGCGGAAAAATGTTGCTGGTACTAAt   >  1:3313493/1‑35 (MQ=255)
                                 aagaaCGTCGGCGGAAAAATGTTGCTGGTACTAAt   >  1:12213436/1‑35 (MQ=255)
                                 aagaaCGTCGGCGGAAAAATGTTGCTGGTACTAAt   <  1:1476779/35‑1 (MQ=255)
                                  AGAACGTCGGCGGAAAAATGTTGCTGGTACTAATg  >  1:2513690‑M1/1‑35 (MQ=255)
                                  |                                  
GTGATTTATCTGGTTTCACCGCTGATTCAGGTGAAGAACGTCGGCGGAAAAATGTTGCTGGTACTAATG  >  REL606/3656720‑3656788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.