New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 514780 =90 (0.880)3 (0.050) 3/28 NT 8.3% coding (727/1146 nt) glxK glycerate kinase II
?REL606 1871739 = 14 (0.230)coding (75/1911 nt) yoaA conserved protein with nucleoside triphosphate hydrolase domain

Only 100 of 160 total aligned reads displayed.

TGTTTTACAACAGCAAACGGAAATTAATGTCTGCCAGATGGCGGGCGGCGGCGCTGCGGGCGGTATGGG  >  REL606/514746‑514814
                                  |                                  
tgtTTTACAACAGCAAACGGAAATTAATGTCTGcc                                    <  1:15395782/35‑1 (MQ=255)
tgtTTTACAACAGCAAACGGAAATTAATGTCTGcc                                    <  1:5084637/35‑1 (MQ=255)
tgtTTTACAACAGCAAACGGAAATTAATGTCTGcc                                    <  1:10289803/35‑1 (MQ=255)
tgtTTTACAACAGCAAACGGAAATTAATGTCTGcc                                    >  1:6147516/1‑35 (MQ=255)
tgtTTTACAACAGCAAACGGAAATTAATGTCTGcc                                    <  1:12715/35‑1 (MQ=255)
tgtTTTACAACAGCAAACGGAAATTAATGTCTGcc                                    >  1:9035603/1‑35 (MQ=255)
gataccaggctttaagccgcgagaaccacagcgac                                    <  1:1385074‑M1/1‑1 (MQ=255)
gataccaggctttaagccgcgagaaccacagcgac                                    <  1:9666799‑M1/1‑1 (MQ=255)
 tttttCCAACAGCAAACGGAAATTAATGTCTGCCa                                   <  1:19727871/34‑1 (MQ=255)
 gtTTTACAACAGCAAACGGAAATTAATGTCTGCCa                                   >  1:6844178/1‑35 (MQ=255)
 ataccaggctttaagccgcgagaaccacagcgaCa                                   <  1:5993727‑M1/2‑1 (MQ=255)
  ttttACAACAGCAAACGGAAATTAATGTCTGCCAg                                  >  1:17681203/1‑35 (MQ=255)
  ttttACAACAGCAAACGGAAATTAATGTCTGCCAg                                  <  1:10674559/35‑1 (MQ=255)
  ttttACAACAGCAAACGGAAATTAATGTCTGCCAg                                  >  1:20008282/1‑35 (MQ=255)
  ttttACAACAGCAAACGGAAATTAATGTCTGCCAg                                  <  1:4786583/35‑1 (MQ=255)
  ttttACAACAGCAAACGGAAATTAATGTCTGCCAg                                  <  1:4933919/35‑1 (MQ=255)
  taccaggctttaagccgcgagaaccacagcgaCAg                                  <  1:6660471‑M1/3‑1 (MQ=255)
   tttACAACAGCAAACGGAAATTAATGTCTGCCAGa                                 >  1:1768081/1‑35 (MQ=255)
   tttACAACAGCAAACGGAAATTAATGTCTGCCAGa                                 >  1:18417224/1‑35 (MQ=255)
   tttACAACAGCAAACGGAAATTAATGTCTGCCAGa                                 >  1:15756997/1‑35 (MQ=255)
   accaggctttaagccgcgagaaccacagcgaCAGa                                 <  1:6332921‑M1/4‑1 (MQ=255)
    ttACAACAGCAAACGGAAATTAATGTCTGCCAGAt                                <  1:15297468/35‑1 (MQ=255)
    ttACAACAGCAAACGGAAATTAATGTCTGCCAGAt                                >  1:3087242/1‑35 (MQ=255)
    ttACAACAGCAAACGGAAATTAATGTCTGCCAGAt                                >  1:7516523/1‑35 (MQ=255)
    ccaggctttaagccgcgagaaccacagcgaCAGAt                                <  1:2027094‑M1/5‑1 (MQ=255)
    ccaggctttaagccgcgagaaccacagcgaCAGAt                                <  1:7364137‑M1/5‑1 (MQ=255)
     tACAACAGCAAACGGAAATTAATGTCTGCCAGATg                               <  1:9281681/35‑1 (MQ=255)
     caggctttaagccgcgagaaccacagcgaCAGATg                               <  1:13381616‑M1/6‑1 (MQ=255)
     caggctttaagccgcgagaaccacagcgaCAGATg                               <  1:1812372‑M1/6‑1 (MQ=255)
      aggctttaagccgcgagaaccacagcgaCAGATgg                              <  1:9552715‑M1/7‑1 (MQ=255)
      aggctttaagccgcgagaaccacagcgaCAGATgg                              <  1:8212171‑M1/7‑1 (MQ=255)
       ggctttaagccgcgagaaccacagcgaCAGATggc                             <  1:12566607‑M1/8‑1 (MQ=255)
       caacaGCAAACGGAAATTAATGTCTGCCAGATggc                             <  1:3449137/35‑1 (MQ=255)
       caacaGCAAACGGAAATTAATGTCTGCCAGATggc                             <  1:4150477/35‑1 (MQ=255)
       caacaGCAAACGGAAATTAATGTCTGCCAGATggc                             <  1:9153354/35‑1 (MQ=255)
       caacaGCAAACGGAAATTAATGTCTGCCAGATggc                             >  1:7063826/1‑35 (MQ=255)
       caacaGCAAACGGAAATTAATGTCTGCCAGATggc                             <  1:19750796/35‑1 (MQ=255)
       caacaGCAAACGGAAATTAATGTCTGCCAGATggc                             <  1:8168671/35‑1 (MQ=255)
       caacaGCAAACGGAAATTAATGTCTGCCAGATggc                             <  1:8917834/35‑1 (MQ=255)
        gctttaagccgcgagaaccacagcgaCAGATggcg                            <  1:783318‑M1/9‑1 (MQ=255)
        gctttaagccgcgagaaccacagcgaCAGATggcg                            <  1:10018240‑M1/9‑1 (MQ=255)
        gctttaagccgcgagaaccacagcgaCAGATggcg                            <  1:15071661‑M1/9‑1 (MQ=255)
        aacaGCAAACGGAAATTAATGTCTGCCAGATggct                            >  1:13300039/1‑34 (MQ=255)
         ctttaagccgcgagaaccacagcgaCAGatggctg                           <  1:241780‑M1/10‑3 (MQ=255)
         acaGCAAACGGAAATTAATGTCTGCCAGATggcgg                           <  1:7049066/35‑1 (MQ=255)
         acaGCAAACGGAAATTAATGTCTGCCAGATggcgg                           >  1:13158629/1‑35 (MQ=255)
         acaGCAAACGGAAATTAATGTCTGCCAGATggcgg                           <  1:6569881/35‑1 (MQ=255)
         acaGCAAACGGAAATTAATGTCTGCCAGATggcgg                           >  1:15980930/1‑35 (MQ=255)
         acaGCAAACGGAAATTAATGTCTGCAAGATggcgg                           <  1:11190289/35‑1 (MQ=255)
          tttaagccgcgagaaccacagcgaCAGATggcggg                          <  1:5605228‑M1/11‑1 (MQ=255)
          tttaagccgcgagaaccacagcgaCAGATggcggg                          <  1:5110079‑M1/11‑1 (MQ=255)
          caGCAAACGGAAATTAATGTCTGCCAGATggcggg                          <  1:19987965/35‑1 (MQ=255)
           ttaagccgcgagaaccacagcgaCAGAtggcggga                         <  1:7991570‑M1/12‑2 (MQ=255)
           aGCAAACGGAAATTAATGTCTGCCAGATggcgggc                         <  1:7658339/35‑1 (MQ=255)
            gCAAACGGAAATTAATGTCTGGCAGATggcgggcg                        >  1:20911/1‑35 (MQ=255)
            gCAAACGGAAATTAATGTCTGCCAGATggcgggcc                        >  1:17228979/1‑34 (MQ=255)
             aagccgcgagaaccacagcgaCAgatggcgggagc                       <  1:13858409‑M1/14‑4 (MQ=255)
             aagccgcgagaaccacagcgaCAgatggcgggagc                       <  1:11250287‑M1/14‑4 (MQ=255)
              aaaCGGAAATTAATGTCTGCCAGATGGCGggcggc                      <  1:9138580/35‑1 (MQ=255)
              aaaCGGAAATTAATGTCTGCCAGATGGCGggcggc                      >  1:225925/1‑35 (MQ=255)
               gccgcgagaaccacagcgaCAGATGGCGggaggcg                     <  1:14158055‑M1/16‑1 (MQ=255)
               aaCGGAAATTAATGTCTGCCAGATGGCGggcggcg                     >  1:1336203/1‑35 (MQ=255)
                aCGGAAATTAATGTCTGTCAGATGGCGggtggggg                    >  1:3773576/1‑35 (MQ=25)
                aCGGAAATTAATGTCTGCCAGATGgcgggggggcg                    >  1:13048385/1‑32 (MQ=37)
                aCGGAAATTAATGTCTGCCAGATGGCGgggggcgg                    >  1:7994047/1‑35 (MQ=255)
                 cGGAAATTAATGTCTGCCAGATGGCGggcggcggg                   >  1:16488884/1‑34 (MQ=255)
                 cGGAAATTAATGTCTGCCAGATGGCGggcggcggc                   <  1:15265732/35‑1 (MQ=255)
                 cGGAAATTAATGTCTGCAAGATGGCGggcggcggc                   <  1:9085436/35‑1 (MQ=255)
                  ggAAATTAATGTCTGCCAGATGGCGggcggggggg                  >  1:10577570/1‑33 (MQ=37)
                  ggAAATTAATGTCTGCCAGATGGCGggcggcgggc                  >  1:10035925/1‑33 (MQ=255)
                  ggAAATTAATGTCTGCCAGATGGCGGgcggaggcg                  <  1:8785084/35‑1 (MQ=255)
                  ggAAATTAATGTCTGCCAGATGACGGgcggcggcg                  <  1:628329/35‑1 (MQ=255)
                   gAAATTAATGTCTGCCAGATGGCGGGCGGCGgcgc                 <  1:594588/35‑1 (MQ=255)
                    aaaTTAATGTCTGCCAGATGGCGGgcggcggcggt                >  1:16518799/1‑33 (MQ=255)
                    aaaTTAATGTCTGCCAGATGGCGGGCGGCGGCGCt                >  1:18500568/1‑35 (MQ=255)
                     aaTTAATGTCTGCCAGATGGCGGGCGGCGGGGCTg               >  1:8576126/1‑35 (MQ=255)
                      aTTAATGTCTGCCAGATGGCGGGCGGCGGCGCTgc              <  1:15033528/35‑1 (MQ=255)
                      aTTAATGTCTGCCAGATGGCGAGCGGCGGCGCTgc              <  1:7336665/35‑1 (MQ=255)
                       ttAATGTCTGCCAGATGGCGGGCGGCGGCGCTgcg             <  1:17000774/35‑1 (MQ=255)
                       ttAATGTCTGCCAGATGGCGGGCGGCGGCGCTgcg             <  1:17306965/35‑1 (MQ=255)
                         aaTGTCTGCCAGATGGCGGGCGGCGGCGCTgcggg           <  1:11939065/35‑1 (MQ=255)
                          aTGTCTGCCAGATGGCGGGCGGCGGCGCTgcgggc          <  1:10219051/35‑1 (MQ=255)
                          aTGTCTGCCAGATGGCGGGCGGCGGCGCTgcgggc          <  1:1840310/35‑1 (MQ=255)
                          aTGTCTGCCAGATGGCGGGCGGCGGCGCTgcgggc          <  1:12765286/35‑1 (MQ=255)
                          aTGTCTGCCAGATGGCGGGCGGCGGCGCTgcgggc          <  1:18506446/35‑1 (MQ=255)
                          aTGTCTGCCAGATGGCGGGCGGCGGCGCTgcgggc          <  1:6198405/35‑1 (MQ=255)
                          aTGTCTGCCAGATGGCGGGCGGCGGCGCTgcgggc          <  1:5861267/35‑1 (MQ=255)
                           tGTCTGCCAGATGGCGGGCGGCGGCGCTgcggggg         >  1:19177065/1‑33 (MQ=255)
                            gTCTGCCAGATGGCGGGCGGCGGCGCTgcgggcgg        >  1:13716631/1‑35 (MQ=255)
                            gTCTGCCAGATGGCGGGCGGCGGCGCTgcgggcgg        <  1:12425906/35‑1 (MQ=255)
                             tCTGCCAGATGGCGGGCGGCGGCGCTggggggggg       >  1:8083490/1‑34 (MQ=25)
                             tCTGCCAGATGGCGGGCGGCGGCGCTGCGGGCGGt       <  1:13775406/35‑1 (MQ=255)
                              cTGCCAGATGGCGGGCGGCGGCGCTgcgggggggg      >  1:11612965/1‑33 (MQ=37)
                              cTGCCAGATGGCGGGCGGCGGCGCTgcgggggggg      >  1:10747705/1‑33 (MQ=37)
                              cTGCCAGATGGCGGGCGGCGGCGCTgcgggggggg      >  1:2582740/1‑33 (MQ=37)
                               tGCCAGATGGCGGGCGGGGGCGCTGCGGGCGGTAt     <  1:40875/35‑1 (MQ=255)
                               tGCCAGATGGCGGGCGGCGGCGCTgcgggcggggt     >  1:7141404/1‑32 (MQ=255)
                               tGCCAGATGGCGGGCGGCGGCGCTGCGGGCGGTAt     <  1:5861365/35‑1 (MQ=255)
                               tGCCAGATGGCGGGCGGCGGCGCTGCGGGCGGTAt     <  1:46000/35‑1 (MQ=255)
                                  CAGATGGCGGGCGGCGGCGCTGCGGGCGGTATggg  >  1:6347164‑M1/1‑35 (MQ=255)
                                  |                                  
TGTTTTACAACAGCAAACGGAAATTAATGTCTGCCAGATGGCGGGCGGCGGCGCTGCGGGCGGTATGGG  >  REL606/514746‑514814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.