New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 47390487 (0.850)42 (0.540) 6/36 NT 41.1% coding (1402/1677 nt) ybaL predicted transporter with NAD(P)‑binding Rossmann‑fold domain
?REL606 = 1923465 55 (0.710)coding (662/1011 nt) ruvB Holliday junction DNA helicase B

Only 100 of 183 total aligned reads displayed.

ATCACGCACTCGACGCAGCAGACGGTTGGCAATGCGCGGCGTACCGCGAGCGCGACGAGCAACTTCCAG  >  REL606/1923431‑1923499
                                  |                                  
aTCACGCACTCGACGCAGCAGACGGTTGGCAATgc                                    <  1:18918575/35‑1 (MQ=255)
aTCACGCACTCGACGCAGCAGACGGTTGGCAATgc                                    >  1:9348288/1‑35 (MQ=255)
 tCACGCACTCGACGCAGCAGACGGTTGGCAATGCg                                   >  1:17668040‑M2/1‑34 (MQ=255)
  cACGCACTCGACGCAGCAGACGGTTGGCAATgccg                                  >  1:350242/1‑33 (MQ=255)
  cACGCACTCGACGCAGCAGACGGTTGGCAATGCgg                                  <  1:20099734‑M2/35‑3 (MQ=255)
  cACGCACTCGACGCAGCAGACGGTTGGCAATGCgc                                  >  1:9647125‑M2/1‑33 (MQ=255)
  cACGCACTCGACGCAGCAGACGGTTGGCAATGCgc                                  >  1:7716244‑M2/1‑33 (MQ=255)
  cACGCACTCGACGCAGCAGACGGTTGGCAATGCgc                                  <  1:7840987‑M2/35‑3 (MQ=255)
   aCGCGCTCGACGCAGCAGACGGTTGGCAATGCgcg                                 >  1:12385803‑M2/1‑32 (MQ=255)
   aCGCACTCGACGCAGCAGACGGTTGGCAATGCgcg                                 <  1:4098565‑M2/35‑4 (MQ=255)
    cGCACTCGACGCAGCAGACGGTTGGCAATGCgcgg                                >  1:6861025‑M2/1‑31 (MQ=255)
     gCACTCGACGCAGCAGACGGTTGGCAATGCgcggc                               >  1:1353857‑M2/1‑30 (MQ=255)
     gCACTCGACGCAGCAGACGGTTGGCAATGCgcggc                               >  1:16535902‑M2/1‑30 (MQ=255)
     gCACTCGACGCAGCAGACGGTTGGCAATGCgcggc                               <  1:16615536‑M2/35‑6 (MQ=255)
     gCACTCGACGCAGCAGACGGGTGGCAATGCgcggc                               <  1:4551085‑M2/35‑6 (MQ=255)
      cACTCGACGCAGCAGACGGTTGGCAATGCgcgggg                              <  1:13554013‑M2/35‑7 (MQ=255)
      cACTCGACGCAGCAGACGGTTGGCAATGCgcggcg                              >  1:2036906‑M2/1‑29 (MQ=255)
      cACTCGACGCAGCAGACGGTTGGCAATGCgcggcg                              <  1:10240782‑M2/35‑7 (MQ=255)
      cACTCGACGCAGCAGACGGTTGGCAATGCgcggcg                              >  1:10176853‑M2/1‑29 (MQ=255)
      cACTCGACGCAGCAGACGGGTGGCAATGCgcggcg                              <  1:17749964‑M2/35‑7 (MQ=255)
        cTCGACGCAGCAGACGGTTGGCAATGCGCGGCGTa                            >  1:17733015/1‑35 (MQ=255)
        cTCGACGCAGCAGACGGTTGGCAATGCGCGGCGTa                            >  1:1955249/1‑35 (MQ=255)
         tCGACGCAGTAGACGGTTGGCAATGCGCGGCGTAc                           >  1:15631872/1‑35 (MQ=255)
         tCGACGCAGCAGACGGTTGGCAATGCGCGGCGTAc                           >  1:19571365/1‑35 (MQ=255)
         tCGACGCAGCAGACGGTTGGCAATGCGCGGCGTAc                           <  1:10792136/35‑1 (MQ=255)
         tCGACGCAGCAGACGGTTGGCAATGCGCGGCGTAc                           <  1:3466792/35‑1 (MQ=255)
          cGACGCAGCAGACGGTTGGCAATGCGCGGCGTAcc                          >  1:12255573/1‑35 (MQ=255)
           gccGCAGCAGACGGTTGGCAATGCGCGGCGTACcg                         <  1:19153208/33‑1 (MQ=255)
             agcagcaGACGGTTGGCAATGCGCGGCGTACcgcg                       <  1:1528354/34‑1 (MQ=255)
              gcagcaGACGGTTGGCAATGCGCGGCGTACCGCGa                      <  1:18484487/35‑1 (MQ=255)
              gcagcaGACGGTTGGCAATGCGCGGCGTACCGCGa                      >  1:19890634/1‑35 (MQ=255)
               cagcagACGGTTGGCAATGCGCGGCGTACCGCGAg                     >  1:15737154/1‑35 (MQ=255)
                agcagACGGTTGGCAATGCGCGGCGTACCGCGAgc                    >  1:7343769/1‑35 (MQ=255)
                agcagACGGTTGGCAATGCGAGGCGTACCGCGAgc                    <  1:6905538/35‑1 (MQ=255)
                 gcagACGGTTGGCAATGCGCGGCGTACCGCGAgcg                   <  1:4273025/35‑1 (MQ=255)
                  cagACGGTTGGCAATGCGCGGCGTACCGCGAgcgc                  >  1:16334636/1‑35 (MQ=255)
                   ngACGGTTGGCAATGCGCGGCGTACCGCGAGcgcg                 >  1:12755793/2‑35 (MQ=255)
                   agACGGTTGGCAATGCGCGGCGTACCGCGAGcgcg                 <  1:5235198/35‑1 (MQ=255)
                   agACGGTTGGCAATGCGCGGCGTACCGCGAGcgcg                 >  1:15390293/1‑35 (MQ=255)
                   agACGGTTGGCAATGCGCGGCGTACCGCAAGcgcg                 >  1:17023504/1‑35 (MQ=255)
                    gACGGTTGGCAATGCGCGGCGTACCGCGAGCGcga                >  1:10710533/1‑35 (MQ=255)
                    gACGGTTGGCAATGCGCGGCGTACCGCGAGCGcga                <  1:11984210/35‑1 (MQ=255)
                    gACGGTTGGCAATGCGCGGCGTACCGCGAGCGcga                <  1:5944028/35‑1 (MQ=255)
                    gACGGTTGGCAATGCGCGGCGTACCGCGAGCGcga                >  1:12841487/1‑35 (MQ=255)
                     aCGGTTGGCAATGCGCGGCGTACCGCGAGCGcgac               <  1:3742829/35‑1 (MQ=255)
                     aCGGTTGGCAATGCGCGGCGTACCGCGAGCGcgac               >  1:5338678/1‑35 (MQ=255)
                     aCGGTTGGCAATGCGCGGCGTACCGCGAGCGcgac               <  1:14130249/35‑1 (MQ=255)
                       ggTTGGCAATGCGCGGCGTACCGCGAGCGcgacga             >  1:5275384/1‑35 (MQ=255)
                        ttgggcaaTGCgcggcgaacgaagaaattatgcaa            >  1:5813837‑M2/4‑11 (MQ=255)
                        gTTGGCAATGCGCGGCGTACCGCGAGCGCGACGAg            >  1:4041739/1‑35 (MQ=255)
                         ttGGCAATGCGCGGCGTACCGCGAGCGAGACGAGc           >  1:4467481/1‑35 (MQ=255)
                         tgggcaATGCgcggcgaacgaagaaattatgcaac           <  1:8160715‑M2/33‑26 (MQ=255)
                         tgggcaATGCgcggcgaacgaagaaattatgcaac           >  1:3564444‑M2/3‑10 (MQ=255)
                          tGGCAATGCGCGGCGTACCGCGAGCGCGACGAGCa          <  1:7567646/35‑1 (MQ=255)
                          tGGCAATGCGCGGCGTACCGCGAGCGCGACGAGCa          <  1:5456933/35‑1 (MQ=255)
                          tGGCAATGCGCGGCGTACCGCGAGCGCGACGAGCa          <  1:8357606/35‑1 (MQ=255)
                          gggcAATGCgcggcgaacgaagaaattatgcaact          <  1:16044783‑M2/34‑27 (MQ=255)
                          gggcAATGCgcggcgaacgaagaaattatgcaact          <  1:17589770‑M2/34‑27 (MQ=255)
                          gggcAATGCgcggcgaacgaagaaattatgcaact          >  1:11044705‑M2/2‑9 (MQ=255)
                          gggcAATGCgcggcgaacgaagaaattatgcaact          <  1:16771071‑M2/34‑27 (MQ=255)
                          gggcAATGCgcggcgaacgaagaaattatgcaact          >  1:1024742‑M2/2‑9 (MQ=255)
                          gggcAATGCgcggcgaacgaagaaattatgcaact          <  1:3328955‑M2/34‑27 (MQ=255)
                           ggCAATGCgcggcgaacgaagaaattatgcaactg         >  1:6170677‑M2/1‑8 (MQ=255)
                           ggCAATGCgcggcgaacgaagaaattatgcaactg         >  1:9828856‑M2/1‑8 (MQ=255)
                           ggCAATGCgcggcgaacgaagaaattatgcaactg         >  1:16739866‑M2/1‑8 (MQ=255)
                           ggCAATGCgcggcgaacgaagaaattatgcaactg         >  1:20040315‑M2/1‑8 (MQ=255)
                           ggCAATGCgcggcgaacgaagaaattatgcaactg         <  1:13012124‑M2/35‑28 (MQ=255)
                           ggCAATGCGCGGCGTACCGCGAGCGCGACGAGCaa         <  1:2944933/35‑1 (MQ=255)
                           ggCAATGCGCGGCGTACCGCGAGCGCGACGAGCaa         >  1:19273757/1‑35 (MQ=255)
                            gCAATGCgcggcgaacgaagaaattatgcaactgg        >  1:11666950‑M2/1‑7 (MQ=255)
                            gCAATGCGCGGCGTCCCGCGAGCGCGACGAGCAAc        <  1:6376257/35‑1 (MQ=255)
                             cAATGCgcggcgaacgaagaaattatgcaactggc       >  1:16110542‑M2/1‑6 (MQ=255)
                             cAATGCgcggcgaacgaagaaattatgcaactggc       >  1:18204737‑M2/1‑6 (MQ=255)
                             cAATGCgcggcgaacgaagaaattatgcaactggc       >  1:16045058‑M2/1‑6 (MQ=255)
                             cAATGCgcggcgaacgaagaaattatgcaactggc       >  1:12601666‑M2/1‑6 (MQ=255)
                             cAATGCgcggcgaacgaagaaattatgcaactggc       <  1:7799118‑M2/35‑30 (MQ=255)
                             cAATGCgcggcgaacgaagaaattatgcaactggc       <  1:2367381‑M2/35‑30 (MQ=255)
                             cAATGCgcggcgaacgaagaaattatgcaactggc       <  1:3909573‑M2/35‑30 (MQ=255)
                             cAATGCgccgcgaacgaagaaattatgcaactggc       <  1:16823223‑M2/35‑30 (MQ=255)
                              aaTGCgcggcgaacgaagaaattatgcaactggcg      >  1:11295395‑M2/1‑5 (MQ=255)
                              aaTGCgcggcgaacgaagaaattatgcaactggcg      >  1:9514753‑M2/1‑5 (MQ=255)
                              aaTGCgcggcgaacgaagaaattatgcaactggcg      <  1:10150244‑M2/35‑31 (MQ=255)
                              aaTGCgcggcgaacgaagaaattatgcaactggcg      <  1:5085454‑M2/35‑31 (MQ=255)
                              aaTGCGCGGCGTCCCGCGAGCGCGACGAGCAACtt      <  1:6309242/35‑1 (MQ=255)
                              aaTGCGCGGCGTCCCGCGAGCGCGACGAGCAACtt      <  1:11185117/35‑1 (MQ=255)
                              aaTGCGCGGCGTCCCGCGAGCGCGACGAGCAACtt      <  1:4801121/35‑1 (MQ=255)
                               aTGCgcggcgaacgaagaaattatgcaactggcgc     <  1:2536497‑M2/35‑32 (MQ=255)
                               aTGCgcggcgaacgaagaaattatgcaactggcgc     <  1:13948649‑M2/35‑32 (MQ=255)
                               aTGCGCGGCGTACCGCGAGCGCGACGAGCAACTTc     >  1:3076617/1‑35 (MQ=255)
                               aTGCGCGGCGTACCGCGAGCGCGACGAGCAACTTc     >  1:8734990/1‑35 (MQ=255)
                               aTGCGCGGCGTACCGCGAGCGCGACGAGCAACTTc     >  1:4209473/1‑35 (MQ=255)
                               aTGCGCGGCGTACCGCGAGCGCGACGAGCAACTTc     >  1:19068366/1‑35 (MQ=255)
                               aTGCGCGGAGTCCCGCGAGCGCGACGAGCAACTTc     <  1:10578187/35‑1 (MQ=25)
                                tGCgcggcgaacgaagaaattatgcaactggcgca    >  1:11717038‑M2/1‑3 (MQ=255)
                                 gcgcggcgaacgaagaaattatgcaactggcgcat   >  1:11376272‑M2/1‑2 (MQ=255)
                                 gcgcggcgaacgaagaaattatgcaactggcgcat   >  1:20561706‑M2/1‑2 (MQ=255)
                                 gcgcggcgaacgaagaaattatgcaactggcgcat   >  1:19197769‑M2/1‑2 (MQ=255)
                                 gcgcggcgaacgaagaaattatgcaactggcgcat   >  1:622514‑M2/1‑2 (MQ=255)
                                  cgcggcgaacgaagaaattatgcaactggcgcctc  <  1:19884018‑M2/35‑35 (MQ=255)
                                  cgcggcgaacgaagaaattatgcaactggcgcatc  <  1:14577769‑M2/35‑35 (MQ=255)
                                  |                                  
ATCACGCACTCGACGCAGCAGACGGTTGGCAATGCGCGGCGTACCGCGAGCGCGACGAGCAACTTCCAG  >  REL606/1923431‑1923499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.