New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 506020 =104 (1.010)12 (0.120) 4/48 NT 14.8% intergenic (+28/‑62) allR/gcl DNA‑binding transcriptional repressor/glyoxylate carboligase
?REL606 758029 = 34 (0.330)coding (806/1266 nt) tolA cell envelope integrity inner membrane protein TolA

TCAAAAAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/506031‑506020
‑‑‑‑‑‑‑‑‑‑‑‑CCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAG  >  REL606/758029‑758061
                                             
ggAAAAAAACCCCCGCCGCAGACAAAAAAGCGGCA            <  1:5963280/33‑1
 ggAAAAAACCCCCGCCGCAGACAAAAAAGCGGCAG           <  1:10548781/33‑1
 gAAAAAAACCCCCGCCGCAGACAAAAAAGCGGCAG           <  1:8593529/34‑1
 gAAAAAAAACCCCGCCGCAGACAAAAAAGCGGCAG           <  1:1696975/34‑1
 gAAAAAAAACCCCGCCGCAGACAAAAAAGCGGCAG           <  1:1378270/34‑1
  AAAAAAACCCCCGCCGCAGACAAAAAAGCGGCAGC          <  1:9787701/35‑1
   AAAAAACCCCCGCCGCAGACAAAAAAGCGGCAGCG         <  1:1359483/35‑1
   AAAAAACCCCCGCCGCAGACAAAAAAGCGGCAGCG         <  1:13892608/35‑1
   AAAAAAACCCCGCCGCAGACAAAAAAGCGGCAGCG         <  1:10900420/35‑1
     AAAACCCCCGCCGCAGACAAAAAAGCGGCAGCGGC       <  1:11503203/35‑1
     AAAAACCCCGCCGCAGACAAAAAAGCGGCAGCGGC       <  1:13383065/35‑1
      AAACCCCCGCCGCAGACAAAAAAGCGGCAGCGGCA      <  1:3844024/35‑1
       aaaCCCCGCCGCAGACAAAAAAGCGGCAGCGGCAA     <  1:12630599/32‑1
       AACCCCCGCCGCAGACAAAAAAGCGGCAGCGGCAA     <  1:11144650/35‑1
       AACCCCCGCCGCAGACAAAAAAGCGGCAGCGGCAA     <  1:2313847/35‑1
       AACCCCCGCCGCAGACAAAAAAGCGGCAGCAGCAA     <  1:14534837/35‑1
        aaCCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAA    <  1:6388349/33‑1
        ACCCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAA    <  1:11491063/35‑1
        ACCCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAA    <  1:11588932/35‑1
         cgCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAA   <  1:116035/33‑1
          CCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAG  <  1:19457405/35‑1
          CCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAG  <  1:14445539/35‑1
          CCCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAG  <  1:13371087/35‑1
                                             
TCAAAAAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/506031‑506020
‑‑‑‑‑‑‑‑‑‑‑‑CCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAG  >  REL606/758029‑758061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.