New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1494073 =76 (0.740)15 (0.170) 7/42 NT 16.6% coding (657/1062 nt) yncE hypothetical protein
?REL606 4351442 = 84 (0.930)intergenic (+50/‑88) groEL/yjeI chaperonin GroEL/hypothetical protein

GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1494109‑1494073
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAG  >  REL606/4351442‑4351475
                                                                       
GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGC                                      <  1:9517337/35‑1
GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGC                                      >  1:8354371/1‑35
GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGC                                      <  1:2472998/35‑1
GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGC                                      <  1:17092079/35‑1
GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGC                                      <  1:19531007/35‑1
 TGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCT                                     <  1:8806437/35‑1
 TGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCT                                     <  1:5095467/35‑1
 TGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCT                                     >  1:4977517/1‑35
 TGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCT                                     >  1:17463966/1‑35
 TGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCT                                     >  1:17778862/1‑35
  nCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG                                    >  1:9369610/2‑35
  GCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG                                    <  1:1466311/35‑1
  GCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG                                    <  1:4177067/35‑1
  GCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG                                    <  1:20417044/35‑1
  GCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG                                    <  1:16989190/35‑1
   CTCTTTGCCGTCATCCAGCATCTTTTTACGGCTGG                                   >  1:4874778/1‑35
   CTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTGG                                   >  1:11037933/1‑35
    TCTTTGCCGTCATCCAGCAGCTTTTTACGGCTGGG                                  >  1:7355330/1‑35
    TCTTTGCCGTCATCCAGCAGCTTTTTACGGCTGGG                                  >  1:14310074/1‑35
    TCTTTGCCGTCATCCAGCAGCTTTTTACGGCTGGG                                  >  1:19531394/1‑35
    TCTTTGCCGTCATCCAGCAGCTTTTTACGGCTGGG                                  >  1:12280063/1‑35
     CTTTGCCGTCATCCAGCAGCTTTTTACGGCTGGGG                                 >  1:626954/1‑35
       TTGCCGTCATCCAGCAGCTTTTTACGGCTGGGGGT                               >  1:1204213/1‑35
        TGCCGTCATCCAGCAGCTTTTTACGGCTGGGGagt                              >  1:11345337/1‑32
        TGCCGTCATCCAGCAGCTTTTTACGGCTGGGGGTT                              >  1:34769/1‑35
        TGCCGTCATCCAGCAGCTTTTTACGGCTGGGGGTT                              >  1:1305428/1‑35
         GCCGTCATCCAGCAGCTTTTTACGGCTGGGGGTTT                             >  1:3890468/1‑35
         GCCGTCATCCAGCAGCTTTTTACGGCTGGGGGTTT                             >  1:9608699/1‑35
          CCGTCATCCAGCAGCTTTTTACGGCTGGGGGTTTT                            >  1:16047544/1‑35
          CCGTCATCCAGCAGCTTTTTACGGCTGGGGGTTTT                            >  1:405141/1‑35
           CGTCATCCAGCAGCTTTTTACGGCTGGGGGTTTTa                           >  1:755307/1‑34
            GTCATCCAGCAGCTTTTTACGGCTGGGGGTTTTat                          >  1:4589836/1‑33
            GTCATCCAGCAGCTTTTTACGGCTGGGGGTTTTTt                          >  1:17892549/1‑34
             TCATCCAGCAGCTTTTTACGGCTGGGGGTTTTatt                         >  1:2752370/1‑32
              CATCCAGCAGCTTTTTACGGCTGGGGGTTTTTTTT                        >  1:373708/1‑35
               ATCCAGCAGCTTTTTACGGCTGGGGGTTTTTTTTT                       >  1:9998227/1‑35
               ATCCAGCAGCTTTTTACGGCTGGGGGTTTTTTTTT                       >  1:592166/1‑35
                 CCAGCAGCTTTTTACGGCTGGGGGTTTTTTTTTTG                     >  1:3740673/1‑35
                  CAGCAGCTTTTTACGGCTGGGGGTTTTTTTTTTGG                    >  1:1544121/1‑35
                                   TGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAA   <  1:552994/35‑1
                                   TGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAA   >  1:18490513/1‑35
                                   TGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAA   >  1:17970720/1‑35
                                    GGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAG  >  1:15891834/1‑35
                                    GGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAG  <  1:16320942/35‑1
                                    GGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAG  >  1:19414826/1‑35
                                                                       
GTGCTCTTTGCCGTCATCCAGCAGCTTTTTACGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1494109‑1494073
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAG  >  REL606/4351442‑4351475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.