New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3302668 =53 (0.520)10 (0.120) 6/38 NT 13.9% intergenic (‑281/‑99) nanR/dcuD transcriptional regulator NanR/predicted transporter
?REL606 4085857 = 82 (1.010)intergenic (+55/‑94) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F

ATGTTATATTTTTTGCAAGGCTATTTATGGTGCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3302706‑3302668
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG  >  REL606/4085857‑4085888
                                                                       
ATGTTATATTTTTTGCAAGGCTATTTATGGTGCGG                                      >  1:7915999/1‑35
ATGTTATATTTTTTGCAAGGCTATTTATGGTGCGG                                      >  1:4868104/1‑35
ATGTTATATTTTTTGCAAGGCTATTTATGGTGCGG                                      <  1:15907676/35‑1
 TGTTATATTTTTTGCAAGGCTATTTATGGTGCGGA                                     >  1:7580532/1‑35
  GTTATATTTTTTGCAAGGCTATTTATGGTGCGGAT                                    <  1:9330286/35‑1
  GTTATATTTTTTGCAAGGCTATTTATGGTGCGGAT                                    >  1:9252159/1‑35
  GTTATATTTTTTGCAAGGCTATTTATGGTGCGGAT                                    <  1:16697814/35‑1
  GTTATATTTTTTGCAAGGCTATTTATGGTGCGGAT                                    <  1:10085303/35‑1
   TTATATTTTTTGCAAGGCTATTTATGGTGCGGATG                                   <  1:15120835/35‑1
   TTATATTTTTTGCAAGGCTATTTATGGTGCGGATG                                   <  1:11999873/35‑1
   TTATATTTTTTGCAAGGCTATTTATGGTGCGGATG                                   <  1:4196422/35‑1
   TTATATTTTTTGCAAGGCTATTTATGGTGCGGATG                                   >  1:17287733/1‑35
    TATATTTTTTGCAAGGCTATTTATGGTGCGGATGT                                  <  1:7115686/35‑1
        TTTTTTGCAAGGCTATTTATGGTGCGGATGGGGGG                              >  1:13559921/1‑35
         TTTTTGCAAGGCTATTTATGGTGCGGATGGGGGGG                             >  1:18528155/1‑35
         TTTTTGCAAGGCTATTTATGGTGCGGATGGGGGGG                             >  1:2863045/1‑35
          TTTTGCAAGGCTATTTATGGTGCGGATGGGGGGGT                            >  1:5708165/1‑35
           TTTGCAAGGCTATTTATGGTGCGGATGGGGGGGTT                           >  1:2259307/1‑35
            TTGCAAGGCTATTTATGGTGCGGATGGGGGGGTTT                          >  1:3771449/1‑35
              GCAAGGCTATTTATGGTGCGGATGGGGGGGTTTTT                        >  1:16963552/1‑35
               CAAGGCTATTTATGGTGCGGATGGGGGGGTTTTTT                       >  1:20613145/1‑35
               CAAGGCTATTTATGGTGCGGATGGGGGGGTTTTTT                       >  1:5210829/1‑35
               CAAGGCTATTTATGGTGCGGATGGGGGGGTTTTTT                       >  1:13132634/1‑35
                 AGGCTATTTATGGTGCGGATGGGGGGGTTTTTTTT                     >  1:11547924/1‑35
                 AGGCTATTTATGGTGCGGATGGGGGGGTTTTTTTT                     >  1:2737138/1‑35
                  GGCTATTTATGGTGCGGATGGGGGGGTTTTTTTTt                    >  1:5677434/1‑34
                                  GATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGC    <  1:6947271/35‑1
                                  GATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGC    <  1:5767242/35‑1
                                  GATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGC    <  1:3415638/35‑1
                                  GATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGC    <  1:19061586/35‑1
                                  GATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGC    <  1:16715921/35‑1
                                   ATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCT   >  1:16222793/1‑35
                                   ATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCT   >  1:17996687/1‑35
                                   ATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCT   <  1:1324511/35‑1
                                   ATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCT   >  1:16199613/1‑35
                                   ATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCT   <  1:12547096/35‑1
                                   ATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCT   >  1:17105610/1‑35
                                    TGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG  <  1:4533417/35‑1
                                    TGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG  <  1:3869425/35‑1
                                    TGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG  <  1:2950009/35‑1
                                    TGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG  <  1:13485924/35‑1
                                                                       
ATGTTATATTTTTTGCAAGGCTATTTATGGTGCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3302706‑3302668
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG  >  REL606/4085857‑4085888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.