New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 114196 =59 (0.570)12 (0.130) 3/42 NT 17.6% coding (349/390 nt) mutT nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP
?REL606 422596 = 61 (0.680)intergenic (‑283/+179) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter

Only 100 of 264 total aligned reads displayed.

ACAAATAATTATCATTATGGTGACAATTGGGTGGGGGGGAAAATAAAGACTCATTAGCTGAATCGTGTA  >  REL606/422562‑422630
                                  |                                  
ttattcgacgttgctaacgggccattgtggcaggg                                    <  1:9400693‑M1/3‑1 (MQ=255)
ttattcgacgttgctaacgggccattgtggcaggg                                    <  1:10997674‑M1/3‑1 (MQ=255)
ttattcgacgttgctaacgggccattgtggcaggg                                    >  1:5074328‑M1/33‑35 (MQ=255)
gtttaagcttcgcaattaccggttcattggctggg                                    >  1:10067695‑M2/35‑35 (MQ=255)
gtttaagcttcgcaattaccggttcattggctggg                                    >  1:17251706‑M2/35‑35 (MQ=255)
ccgcgcggacccgccagggttttgtgagtGGTggg                                    <  1:8273076‑M1/6‑1 (MQ=255)
aCAAATAATTATCATTATGGTGACAATtgggtggg                                    <  1:11431386/35‑1 (MQ=255)
aCAAATAATTATCATTATGGTGACAATtgggtggg                                    >  1:1212505/1‑35 (MQ=255)
 tattcgacgttgctaacgggccattgtggcagggg                                   <  1:7448511‑M1/4‑1 (MQ=255)
 gaacagccagcagaccaccggcgagagcGGTgggg                                   <  1:3698596‑M1/7‑1 (MQ=255)
 gaacagccagcagaccaccggcgagagcGGTgggg                                   <  1:4948007‑M1/7‑1 (MQ=255)
 cgcgcggacccgccagggttttgtgagtGGTgggg                                   <  1:19062868‑M1/7‑1 (MQ=255)
 cgcgcggacccgccagggttttgtgagtGGTgggg                                   <  1:2147401‑M1/7‑1 (MQ=255)
 cgaccggactggaagattacatcggctgggggggg                                   <  1:3907711‑M1/4‑1 (MQ=255)
 cAAATAATTATCATTATGGTGACAATTGGGTgggg                                   <  1:11435677/35‑1 (MQ=255)
  ttaagcttcgcaattaccggttcattggctggggg                                  >  1:2000004‑M2/33‑35 (MQ=255)
  gaccggactggaagattacatcggctggggggggg                                  <  1:5169051‑M1/5‑1 (MQ=255)
  attcgacgttgctaacgggccattttggcaggggt                                  <  1:6221520‑M1/5‑2 (MQ=255)
  aaaTAATTATCATTATGGTGACAATTGGGTggggg                                  <  1:12996760/35‑1 (MQ=255)
  aaaTAATTATCATTATGGTGACAATTGGGTggggg                                  <  1:3783352/35‑1 (MQ=255)
   ttcgacgttgctaacgggccattgtggcagggggg                                 <  1:9289387‑M1/6‑1 (MQ=255)
   taagcttcgcaattaccggttcattggctgggggg                                 >  1:13163441‑M2/32‑35 (MQ=255)
   accggactggaagattacatcggctgggggggggg                                 <  1:4258475‑M1/6‑1 (MQ=255)
    tcgacgttgctaacgggccattgtggcagggggga                                <  1:4353793‑M1/7‑2 (MQ=255)
    gcggacccgccagggttttgtgagtGGTggggggg                                <  1:8810253‑M1/10‑1 (MQ=255)
    gcggacccgccagggttttgtgagtGGTggggggg                                <  1:12329414‑M1/10‑1 (MQ=255)
    ccggactggaagattacatcggctggggggggggg                                <  1:2888696‑M1/7‑1 (MQ=255)
    ataatTATCATTATGGTGACAATTGGGTggggggg                                <  1:58260/35‑1 (MQ=255)
    aagcttcgcaattaccggttcattggctggggggg                                >  1:1462721‑M2/31‑35 (MQ=255)
     cgacgttgctaacgggccattgtggcagggggggg                               <  1:16525023‑M1/8‑2 (MQ=255)
     agcttcgcaattaccggttcattggctggGGGGGa                               >  1:14761675‑M2/30‑35 (MQ=255)
     agcttcgcaattaccggttcattggctggGGGGGa                               >  1:17475719‑M2/30‑35 (MQ=255)
     agcttcgcaattaccggttcattggctggGGGGGa                               >  1:4318077‑M2/30‑35 (MQ=255)
     agccagcagaccaccggcgagagcGGTGGGGGGGa                               <  1:5202221‑M1/11‑1 (MQ=255)
      ggactggaagattacatcggctggggGGGGGGGaa                              <  1:11784737‑M1/9‑1 (MQ=255)
      ggacccgccagggttttgtgagtGGTGGGGGGGaa                              <  1:15820885‑M1/12‑1 (MQ=255)
      gcttcgcaattaccggttcattggctgggggggga                              >  1:474097‑M2/29‑33 (MQ=255)
      gccagcagaccaccggcgagagcGGTGGGGGGGaa                              <  1:18601162‑M1/12‑1 (MQ=255)
      gacgttgctaacgggcccttgtggcaGGGGGGGaa                              <  1:17686798‑M1/9‑1 (MQ=255)
      gacgttgctaacgggccattgtggcaGGGGGGGaa                              <  1:1842392‑M1/9‑1 (MQ=255)
      gacgttgctaacgggccattgtggcaGGGGGGGaa                              <  1:2438790‑M1/9‑1 (MQ=255)
      aatTATCATTATGGTGACAATTGGGTGGGGGGGaa                              >  1:13452254/1‑35 (MQ=255)
      aatTATCATTATGGTGACAATTGGGTGGGGGGGaa                              <  1:2985585/35‑1 (MQ=255)
      aatTATCATTATGGTGACAATTGGGTGGGGGGGaa                              >  1:3066582/1‑35 (MQ=255)
       gactggaagattacatcggctggggGGGGGGGaaa                             <  1:6881235‑M1/10‑1 (MQ=255)
       gacccgccagggttttgtgagtGGTGGGGGggaca                             <  1:15868046‑M1/13‑3 (MQ=255)
       cttcgcaattaccggttcattggctggGGGGGaaa                             >  1:7647681‑M2/28‑35 (MQ=255)
       ccagcagaccacctgcgagagcGGTGGGGGGGaaa                             <  1:523962‑M1/13‑1 (MQ=255)
       atTATCATTATGGTGACAATTGGGTGGGGGGGaaa                             >  1:17426245/1‑35 (MQ=255)
       atTATCATTATGGTGACAATTGGGTGGGGGGGaaa                             >  1:13506983/1‑35 (MQ=255)
       atTATCATTATGGTGACAATTGGGTGGGGGGGaaa                             <  1:11534059/35‑1 (MQ=255)
       acgttgctaacgggccattgtggcaGGGGGGGaaa                             <  1:8911054‑M1/10‑1 (MQ=255)
       acgttgctaacgggccattgtggcaGGGGGGGaaa                             <  1:14088975‑M1/10‑1 (MQ=255)
       acgttgctaacgggccattgtggcaGGGGGGGaaa                             <  1:102746‑M1/10‑1 (MQ=255)
        ttATCATTATGGTGACAATTGGGTGGGGGGGaaaa                            <  1:9855631/35‑1 (MQ=255)
        gactccggttccgtagcgggGGGAGGGGGGGaaaa                            <  1:6554989‑M1/15‑1 (MQ=255)
        actggaagattacatcggctggggGGGGGGgaaac                            <  1:18464002‑M1/11‑2 (MQ=255)
        actggaagattacatcggctggggGGGGGGGaaaa                            <  1:7743100‑M1/11‑1 (MQ=255)
        acccgccagggttttgtgagtGGTGGGGGGGgaaa                            <  1:16972737‑M1/14‑1 (MQ=255)
         tATCATTATGGTGACAATTGGGTGGGGGGGAAAAt                           <  1:18784332/35‑1 (MQ=255)
         gttgctaacggaccattgtggcaGGGGGGgaaaaa                           <  1:13895088‑M1/12‑2 (MQ=255)
         ctggaagattacatcggctggggGGGGGGGAAAAt                           <  1:17894094‑M1/12‑1 (MQ=255)
         agcagaccaccggcgagagcGGTGGGGGGgaaaaa                           <  1:3051421‑M1/15‑2 (MQ=255)
          ttgctaacgggccattgtggcaGGGGGggaaaaag                          <  1:13615835‑M1/13‑3 (MQ=255)
           tCATTATGGTGACAATTGGGTGGGGGGGAAAATaa                         <  1:18750672/35‑1 (MQ=255)
            gctaacgggccattgtggcaGGGGGGGAAAATaaa                        <  1:2281270‑M1/15‑1 (MQ=255)
            cATTATGGTGACAATTGGGTGGGGGGGAAAATaaa                        <  1:7134294/35‑1 (MQ=255)
            cATTATGGTGACAATTGGGTGGGGGGGAAAATaaa                        <  1:732726/35‑1 (MQ=255)
              ttATGGTGACAATTGGGTGGGGGGGAAAATAAAGa                      >  1:11143085/1‑35 (MQ=255)
              ttAAGGTGACAATTGGGTGGGGGGGAAAATAAAGa                      >  1:20382712/1‑35 (MQ=255)
               tATGGTGACAATTGGGTGGGGGGGAAAATAAAGAc                     >  1:16319648/1‑35 (MQ=255)
                aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt                    <  1:911436/35‑1 (MQ=255)
                aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt                    <  1:683481/35‑1 (MQ=255)
                aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt                    >  1:10248040/1‑35 (MQ=255)
                 tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc                   >  1:1272309/1‑35 (MQ=255)
                 tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc                   >  1:8574493/1‑35 (MQ=255)
                 tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc                   >  1:6011501/1‑35 (MQ=255)
                  ggTGACAATTGGGTGGGGGGGAAAATAAAGACTCa                  >  1:11283749/1‑35 (MQ=255)
                   gTGACAATTGGGTGGGGGGGAAAATAAAGACTCAt                 >  1:20102830/1‑35 (MQ=255)
                    tGACAATTGGGTGGGGGGGAAAATAAAGACTCAtt                >  1:3252817/1‑35 (MQ=255)
                     gACAATTGGGTGGGGGGGAAAATAAAGACTCATTa               >  1:16901267/1‑35 (MQ=255)
                       cAATTGGGTGGGGGGGAAAATAAAGACTCATTAGc             >  1:15505162/1‑35 (MQ=255)
                       cAATTGGGTGGGGGGGAAAATAAAGACTCATTAGc             <  1:4628242/35‑1 (MQ=255)
                        aaTTGGGTGGGGGGGAAAATAAAGACTCATTAGCt            <  1:7859374/35‑1 (MQ=255)
                          ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa          <  1:13795807/35‑1 (MQ=255)
                          ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa          >  1:18213262/1‑35 (MQ=255)
                           tgggtgggGGGGAAAATAAAGACTCATTAGCTGaa         >  1:11822704/1‑35 (MQ=255)
                            gggtgggGGGGAAAATAAAGACTCATTAGCTGAAt        >  1:16147184/1‑35 (MQ=255)
                            gggtgggGGGGAAAATAAAGACTCATTAGCTGAAt        >  1:12252054/1‑35 (MQ=255)
                             GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc       >  1:10535549‑M1/1‑35 (MQ=255)
                             GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc       >  1:8085840‑M1/1‑35 (MQ=255)
                             GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc       <  1:15359976‑M1/35‑1 (MQ=255)
                             GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc       <  1:1436646‑M1/35‑1 (MQ=255)
                              GTGGGGGGGAAAATAAAGACTCATTAGCTGAATCg      >  1:18011126‑M1/1‑35 (MQ=255)
                              GTGGGGGGGAAAATAAAGACTCATTAGCTGAATCg      >  1:15147218‑M1/1‑35 (MQ=255)
                               TGGGGGGGAAAATAAAGACTCATTAGCTGAATCgt     >  1:19644290‑M1/1‑35 (MQ=255)
                                 ggggtgAAAATAAAGACTCATTAGCTTAATCgtgt   >  1:14959419/1‑35 (MQ=37)
                                  GGGGGAAAATAAAGACTCATTAGCTGAATCGTGTa  >  1:16554410‑M1/1‑35 (MQ=255)
                                  GGGGGAAAATAAAGACTCATTAGCTGAATCGTGTa  >  1:18867935‑M1/1‑35 (MQ=255)
                                  GGGGGAAAATAAAGACTCATTAGCTGAATCGTGTa  >  1:10373719‑M1/1‑35 (MQ=255)
                                  |                                  
ACAAATAATTATCATTATGGTGACAATTGGGTGGGGGGGAAAATAAAGACTCATTAGCTGAATCGTGTA  >  REL606/422562‑422630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.