New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1087708 =57 (0.550)7 (0.090) 3/36 NT 11.8% coding (342/801 nt) ycdJ predicted hydrolase
?REL606 = 1145443 62 (0.800)intergenic (‑8/‑147) flgA/flgB flagellar basal body P‑ring biosynthesis protein A/flagellar basal‑body rod protein B

Only 100 of 119 total aligned reads displayed.

GAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACG  >  REL606/1087674‑1087742
                                  |                                  
gccacgctacgttttattatcagcattttcgcccc                                    <  1:9569787‑M1/1‑1 (MQ=255)
gccacgctacgttttattatcagcattttcgcccc                                    <  1:19051556‑M1/1‑1 (MQ=255)
gccacgctacgttttattatcagcattttcgcccc                                    >  1:16371427‑M1/35‑35 (MQ=255)
gccacgctacgttttattatcagcattttcgcccc                                    >  1:437840‑M1/35‑35 (MQ=255)
gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc                                    >  1:1816911/1‑35 (MQ=255)
gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc                                    <  1:18781312/35‑1 (MQ=255)
gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc                                    >  1:20147253/1‑35 (MQ=255)
gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc                                    >  1:3593915/1‑35 (MQ=255)
gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc                                    <  1:12652920/35‑1 (MQ=255)
gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc                                    <  1:11698313/35‑1 (MQ=255)
gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc                                    >  1:16129888/1‑35 (MQ=255)
gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc                                    >  1:7198011/1‑35 (MQ=255)
gAAAACAGCGGCGCGTATGGGCGTTTATTCGTagc                                    <  1:9018477/35‑1 (MQ=255)
 aaaaCAGCGGCGCGTATGGGCGTTTATTCGTagcc                                   >  1:14242376/1‑35 (MQ=255)
  aaaCAGCGGCGCGTATGGTCGTTTATTCGTagcca                                  >  1:4104200/1‑35 (MQ=255)
  aaaCAGCGGCGCGTATGGGCGTTTATTCGTagccc                                  >  1:1385158/1‑34 (MQ=255)
  aaaCAGCGGCGCGTATGGGCGTTTATTCGTagcca                                  <  1:3747198/35‑1 (MQ=255)
  aaaCAGCGGCGCGTATGGGCGTTTATTCGTagcca                                  >  1:6509867/1‑35 (MQ=255)
   aaCAGCGGCGCGTATGGGCGTTTATTCGTagccag                                 >  1:11799440/1‑35 (MQ=255)
   aaCAGCGGCGCGTATGGGCGTTTATTCGTagccag                                 >  1:6486363/1‑35 (MQ=255)
   aaCAGCGGCGCGTATGGGCGTTTATTCGTagccag                                 <  1:18462166/35‑1 (MQ=255)
    aCAGCGGCGCGTATGGGCGTTTATTCGTagccagc                                >  1:9409041/1‑35 (MQ=255)
     cAGCGGCGCGTATGTGCGTTTATTCGTagccagcc                               >  1:5099570/1‑35 (MQ=255)
     cAGCGGCGCGTATGGGCGTTTATTCGTagccagcc                               >  1:15164573/1‑35 (MQ=255)
     cAGCGGCGCGTATGGGCGTTTATTCGTagccagcc                               <  1:8767104/35‑1 (MQ=255)
     cAGCGGCGCGTATGGGCGTTTATTCGTagccagcc                               >  1:11663520/1‑35 (MQ=255)
     cAGCGGCGCGTATGGGCGTTTATTCGTagccagcc                               >  1:4973992/1‑35 (MQ=255)
     cAGAGGCGCGTATGGGCGTTTATTCGTagccagcc                               <  1:8960606/35‑1 (MQ=255)
      aGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCg                              >  1:2499104/1‑35 (MQ=255)
      aGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCg                              >  1:4533158/1‑35 (MQ=255)
         ggcgCGTATGGGCGTTTATTCGTAGCCAGCCGTTa                           >  1:17914018/1‑35 (MQ=255)
          gcgcGTATGGGCGTTTATTCGTAGCCAGCCGTTaa                          >  1:14171418/1‑35 (MQ=255)
           cgcgTATTGGCGTTTATTCGTATCCAGCCGTTAAc                         >  1:5947907/1‑35 (MQ=25)
           cgcgTATGGGCGTTTATTCGTAGCCAGCCGTTAAc                         >  1:862581/1‑35 (MQ=255)
           cgcgTATGGGCGTTTATTCGTAGCCAGCCGTTAAc                         >  1:629424/1‑35 (MQ=255)
           cgcgTATGGGCGTTTATTCGTAGCCAGCCGTTAAc                         >  1:15969850/1‑35 (MQ=255)
            gcgTATGGGCGTTTATTCGTAGCCAGCCGTTAACg                        >  1:9672464/1‑35 (MQ=255)
            gcgTATGGGCGTTTATTCGTAGCCAGCCGTTAACg                        >  1:12362307/1‑35 (MQ=255)
             cgTATGGGCGTTTATTCGTAGCCAGCCGTTaaagg                       >  1:8358481/1‑32 (MQ=255)
             cgTATGGGCGTTTATTCGTAGCCAGCCGTTACCGc                       >  1:5954682/1‑35 (MQ=255)
             cgTATGGGCGTTTATTCGTAGCCAGCCGTTAACGc                       >  1:7896898/1‑35 (MQ=255)
              gTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCt                      >  1:11404145/1‑35 (MQ=255)
              gTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCt                      >  1:176965/1‑35 (MQ=255)
              gTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCt                      >  1:18019415/1‑35 (MQ=255)
              gTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCt                      >  1:5613454/1‑35 (MQ=255)
              gTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCt                      >  1:5229573/1‑35 (MQ=255)
               tATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTg                     >  1:17403471/1‑35 (MQ=255)
               tATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTg                     >  1:8921343/1‑35 (MQ=255)
               tATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTg                     >  1:12652926/1‑35 (MQ=255)
                 tGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGAt                   >  1:779913/1‑35 (MQ=255)
                   ggCGTTTATTCGTAGCCAGCCGTTAACGCTGATCa                 >  1:14975847/1‑35 (MQ=255)
                    gCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAg                >  1:8852903/1‑35 (MQ=255)
                    gCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAg                >  1:6500736/1‑35 (MQ=255)
                     cttttTTTCTTACCCAGCCGTTAACGCTGATCAGc               <  1:12048355/33‑1 (MQ=18)
                     cGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGc               >  1:4316848/1‑35 (MQ=255)
                     cGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGc               >  1:14274329/1‑35 (MQ=255)
                      ttttTTTCGTACCCAGCCGTTAACGCTGATCAGca              <  1:8240953/34‑1 (MQ=25)
                      gTTTATTCGTAGCCAGCCGTTAACGCTGATCAGca              >  1:5271287/1‑35 (MQ=255)
                      gTTTATTCGTAGCCAGCCGTTAACGCTGATCAGca              >  1:12766298/1‑35 (MQ=255)
                      gTTTATTCGTAGCCAGCCGTTAACGCTGATCAGca              >  1:13838090/1‑35 (MQ=255)
                      gTTTATTCGTAGCCAGCCGTTAACGCTGATCAGca              >  1:10994475/1‑35 (MQ=255)
                       tttATTCGTAGCCAGCCGTTAACGCTGATCAGcac             >  1:7767787/1‑35 (MQ=255)
                       tttATTCGTAGCCAGCCGTTAACGCTGATCAGcac             >  1:7660813/1‑35 (MQ=255)
                        ttATTCGTAGCCAGCCGTTAACGCTGATCAGcaca            >  1:1197367/1‑35 (MQ=255)
                         tttccgcccCCAGCCGTTAACGCTGATCAGCACAg           >  1:8882734‑M1/10‑35 (MQ=255)
                         tATTCGTAGCCAGCCGTTAACGCTGATCAGCACAg           >  1:14208473/1‑35 (MQ=255)
                          tttcgcccCCAGCCGTTAACGCTGATCAGCACAGt          >  1:9477507‑M1/9‑35 (MQ=255)
                          tttcccccCCAGCCGTTAACGCTGATCAGCACAGt          >  1:2198900‑M1/9‑35 (MQ=255)
                          tttCATACCCAGCCGTTAACGCTGATCAGCACAGt          <  1:15971667/34‑1 (MQ=25)
                          aTTCGTAGCCAGCCGTTAACGCTGATCAGCACAGt          >  1:11391979/1‑35 (MQ=255)
                           ttcgtccCCAGCCGTTAACGCTGATCAGCACAGtt         >  1:15487954‑M1/8‑35 (MQ=255)
                           ttcgcccCCAGCCGTTAACGCTGATCAGCACAGtt         >  1:978401‑M1/8‑35 (MQ=255)
                           ttcgcccCCAGCCGTTAACGCTGATCAGCACAGtt         >  1:1103353‑M1/8‑35 (MQ=255)
                           ttcgaccCCAGCCGTTAACGCTGATCAGCACAGtt         >  1:5736915‑M1/8‑35 (MQ=255)
                            tCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTa        >  1:5194165/1‑35 (MQ=255)
                            tCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTa        >  1:3537821/1‑35 (MQ=255)
                            tCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTa        >  1:8940940/1‑35 (MQ=255)
                             cgcccCCAGCCGTTAACGCTGATCAGCACAGTTAc       >  1:5449062‑M1/6‑35 (MQ=255)
                             cGTAGCCAGCCGTTAACGCTGATCAGCACAGTTAc       >  1:741774/1‑35 (MQ=255)
                             cGTAGCCAGCCGTTAACGCTGATCAGCACAGTTAc       >  1:11404843/1‑35 (MQ=255)
                             cGTAGCCAGCAGTTAACGCTGATCAGCACAGTTAc       <  1:17907585/35‑1 (MQ=255)
                              gTAGCCAGCCGTTAACGCTGATCAGCACAGTTAcc      >  1:7599755/1‑35 (MQ=255)
                              ctcgccagccGTTAACGCTGATCAGCACAGTTAcc      <  1:15119754/32‑1 (MQ=255)
                               tAGCCAGCCGTTAACGCTGATCAGCACAGTTACCg     >  1:17057207/1‑35 (MQ=255)
                               tAGCCAGCCGTTAACGCTGATCAGCACAGTTACCg     >  1:11037712/1‑35 (MQ=255)
                               tAGCCAGCCGTTAACGCTGATCAGCACAGTTACCg     >  1:19971860/1‑35 (MQ=255)
                               accCCAGCCGTTAACGCTGATCAGCACAGTTACCg     >  1:12949014‑M1/4‑35 (MQ=255)
                                ccCCAGCCGTTAACGCTGATCAGCACAGTTACCGa    >  1:16129658‑M1/3‑35 (MQ=255)
                                ccCCAGCCGTTAACGCTGATCAGCACAGTTACCGa    >  1:8461431‑M1/3‑35 (MQ=255)
                                ccCCAGCCGTTAACGCTGATCAGCACAGTTACCGa    >  1:18176561‑M1/3‑35 (MQ=255)
                                agccagccGTTAACGCTGATCAGCACAGTTACCGa    >  1:14692681/1‑35 (MQ=255)
                                agccagccGTTAACGCTGATCAGCACAGTTACCGa    >  1:7590029/1‑35 (MQ=255)
                                agccagccGTTAACGCTGATCAGCACAGTTACCGa    >  1:3208042/1‑35 (MQ=255)
                                agccagccGTTAACGCTGATCAGCACAGTTACCGa    >  1:3820633/1‑35 (MQ=255)
                                agccagccGTTAACGCTGATCAGCACAGTTACCGa    >  1:431726/1‑35 (MQ=255)
                                  CCAGCCGTTAACGCTGATCAGCACAGTTACCGact  <  1:9859970‑M1/35‑2 (MQ=255)
                                  CCAGCCGTTAACGCTGATCAGCACAGTTACCGAcg  <  1:7277536‑M1/35‑1 (MQ=255)
                                  CCAGCCGTTAACGCTGATCAGCACAGTTACCGAcg  <  1:631870‑M1/35‑1 (MQ=255)
                                  CCAGCCGTTAACGCTGATCAGCACAGTTACCGAcg  <  1:6221339‑M1/35‑1 (MQ=255)
                                  CCAGCCGTTAACGCTGATCAGCACAGTTACCGAcg  <  1:4510291‑M1/35‑1 (MQ=255)
                                  |                                  
GAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACG  >  REL606/1087674‑1087742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.