New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 947579 = | 44 (0.430) | 9 (0.090) | 4/46 | NT | 13.7% | coding (442/1767 nt) | cydD | fused cysteine transporter subunits of ABC superfamily: membrane component/ATP‑binding component |
? | REL606 | = 3484563 | 71 (0.720) | coding (887/1017 nt) | rtcA | RNA 3'‑terminal‑phosphate cyclase |
CTATGCACGCTATCTGCCGCAAATGGCGCTGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/947613‑947579 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGCGCGGGGGAATTTACGGTCGCCCATCCCTCATG < REL606/3484563‑3484530 CTATGCACGCTATCTGCCGCAAATGGCGCTGGCAG > 1:13163040/1‑35 CTATGCACGCTATCTGCCGCAAATGGCGCTGGCAG < 1:6544011/35‑1 CTATGCACGCTATCTGCCGCAAATGGCGCTGGCAG < 1:1457965/35‑1 CTATGCACGCTATCCGCCGCAAATGGCGCTGGCAG > 1:4780053/1‑35 TATGCACGCTATCTGCCGCAAATGGCGCTGGCAGG > 1:4216318/1‑35 TATGCACGCTATCTGCCGCAAATGGCGCTGGCAGG > 1:2678884/1‑35 TATGCACGCTATCTGCCGCAAATGGCGCTGGCAGG > 1:2862917/1‑35 ATGCACGCTATCTGCCGCAAATGGCGCTGGCAGGg > 1:7648641/1‑34 ATGCACGCTATCTGCCGCAAATGGCGCTGGCAGGg > 1:434466/1‑34 TGCACGCTATCTGCCGCAAATGGCGCTGGCAGGgg > 1:8337776/1‑33 GCACGCTATCTGCCGCAAATGGCGCTGGCAGGggt > 1:1819377/1‑32 GCACGCTATCTGCCGCAAATGGCGCTGGCAGGggt > 1:19333036/1‑32 CACGCTATCTGCCGCAAATGGCGCTGGCAGGGGCG > 1:12107323/1‑35 ACGCTATCTGCCGCAAATGGCGCTGGCAGGGGCGG > 1:15586514/1‑35 ACGCTATCTGCCGCAAATGGCGCTGGCAGGGGCGG > 1:15578649/1‑35 ACGCTATCTGCCGCAAATGGCGCTGGCAGGGGCGG > 1:7857771/1‑35 CGCTATCTGCCGCAAATGGCGCTGGCAGGGGCGGG > 1:12936375/1‑35 CGCTATCTGCCGCAAATGGCGCTGGCAGGGGCGGG > 1:8993110/1‑35 GCTATCTGCCGCAAATGGCGCTGGCAGGGGCGGGG > 1:7841236/1‑35 GCTATCTGCCGCAAATGGCGCTGGCAGGGGCGGGG > 1:7955494/1‑35 GCTATCTGCCGCAAATGGCGCTGGCAGGGGCGGGG > 1:85370/1‑35 CTATCTGCCGCAAATGGCGCTGGCAGGGGCGGGGG > 1:8142361/1‑35 GGCGCGGGGGAATTTACGGTCGCCCATCCCTCATG > 1:16528948/1‑35 GGCGCGGGGGAATTTACGGTCGCCCATCCCTCATG < 1:14568140/35‑1 GGCGCGGGGGAATTTACGGTCGCCCATCCCTCATG < 1:8169128/35‑1 CTATGCACGCTATCTGCCGCAAATGGCGCTGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/947613‑947579 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGCGCGGGGGAATTTACGGTCGCCCATCCCTCATG < REL606/3484563‑3484530 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |