New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 47390487 (0.850)42 (0.540) 6/36 NT 41.1% coding (1402/1677 nt) ybaL predicted transporter with NAD(P)‑binding Rossmann‑fold domain
?REL606 = 1923465 55 (0.710)coding (662/1011 nt) ruvB Holliday junction DNA helicase B

Only 100 of 120 total aligned reads displayed.

ATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/473865‑473904
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgcGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGA  <  REL606/1923465‑1923432
                                                                          
ATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTC                                         <  1:10725787/35‑1
 TTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCG                                        >  1:14560489/1‑35
 TTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCG                                        <  1:9563134/35‑1
 TTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCG                                        >  1:2760294/1‑35
 TTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCG                                        <  1:7475335/35‑1
 TTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCG                                        >  1:2224292/1‑35
  TCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGC                                       <  1:15132258/35‑1
  TCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGC                                       >  1:3246228/1‑35
  TCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGC                                       <  1:4165990/35‑1
  TCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGC                                       <  1:6260556/35‑1
  TCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGC                                       >  1:16964333/1‑35
  TCCAGATGCGCCAGTTGCACAATTTCTTCGTTCGC                                       >  1:9470773/1‑35
   CCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCC                                      >  1:13865851/1‑35
   CCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCC                                      >  1:5626243/1‑35
   CCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCC                                      <  1:10746977/35‑1
   CCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCC                                      >  1:2282689/1‑35
   CCAGATGCGCCAGTTGCATAATTTCTTCGTTAGCC                                      <  1:7530476/35‑1
    CAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCG                                     >  1:17218303/1‑35
    CAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCG                                     <  1:5555546/35‑1
    CAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCG                                     >  1:12862137/1‑35
    CAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCG                                     >  1:2265118/1‑35
    CAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCG                                     >  1:3029273/1‑35
     AGATGCGCCAGTTTCATAATTTCTTCGTTCGCCGC                                    >  1:8126251/1‑35
     AGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGC                                    <  1:5633147/35‑1
     AGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGC                                    >  1:5515791/1‑35
     AGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGC                                    >  1:6460954/1‑35
      GATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCG                                   <  1:14577769/35‑1
      GATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCG                                   <  1:19566846/35‑1
       ATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCGC                                  >  1:10245524/1‑35
       ATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCGC                                  >  1:20561706/1‑35
       ATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCGC                                  >  1:11376272/1‑35
       ATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCGC                                  >  1:4184225/1‑35
       ATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCGC                                  >  1:19197769/1‑35
       ATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCGC                                  >  1:12673375/1‑35
       ATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCGC                                  >  1:16704037/1‑35
       ATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCGC                                  >  1:622514/1‑35
       ATGCGCCAGTTGCATAATTTCTTCGTTCGCCGCGC                                  >  1:1259472/1‑35
        TGCGCCAGTTGCATAATTTCTTCGTTCGCCGCGCA                                 <  1:4722033/35‑1
        TGCGCCAGTTGCATAATTTCTTCGTTCGCCGCGCA                                 >  1:11717038/1‑35
        TGCGCCAGTTGCATAATTTCTTCGTTCGCCGCGCA                                 <  1:12109623/35‑1
         GCGCCAGTTGCATAATTTCTTCGTTCGCCGCGCAT                                <  1:2536497/35‑1
         GCGCCAGTTGCATAATTTCTTCGTTCGCCGCGCAT                                <  1:13948649/35‑1
         GCGCCAGTTGCATAATTTCTTCGTTCGCCGCGCAT                                >  1:16187358/1‑35
          CGCCAGTTGCATAATTTCTTCGTTCGCCGCGCATT                               <  1:10150244/35‑1
          CGCCAGTTGCATAATTTCTTCGTTCGCCGCGCATT                               >  1:1680785/1‑35
          CGCCAGTTGCATAATTTCTTCGTTCGCCGCGCATT                               >  1:9514753/1‑35
          CGCCAGTTGCATAATTTCTTCGTTCGCCGCGCATT                               >  1:11295395/1‑35
          CGCCAGTTGCATAATTTCTTCGTTCGCCGCGCATT                               <  1:5085454/35‑1
           GCCAGTTGCATAATTTCTTCGTTCGCCGCGCATTG                              >  1:11049635/1‑35
           GCCAGTTGCATAATTTCTTCGTTCGCCGCGCATTG                              <  1:13887884/35‑1
           GCCAGTTGCATAATTTCTTCGTTCGCCGCGCATTG                              <  1:3909573/35‑1
           GCCAGTTGCATAATTTCTTCGTTCGCCGCGCATTG                              <  1:7799118/35‑1
           GCCAGTTGCATAATTTCTTCGTTCGCCGCGCATTG                              >  1:16045058/1‑35
           GCCAGTTGCATAATTTCTTCGTTCGCCGCGCATTG                              >  1:16110542/1‑35
           GCCAGTTGCATAATTTCTTCGTTCGCCGCGCATTG                              >  1:18204737/1‑35
           GCCAGTTGCATAATTTCTTCGTTCGCCGCGCATTG                              >  1:12601666/1‑35
            CCAGTTTCATAATTTCTTCGTTCGCCGCGCATTGC                             >  1:18923369/1‑35
            CCAGTTGCATAATTTCTTCGTTCGCCGCGCATTGC                             >  1:11666950/1‑35
            CCAGTTGCATAATTTCTTCGTTCGCCGCGCATTGC                             <  1:6301406/35‑1
            CCAGTTGCATAATTTCTTCGTTCGCCGCGCATTGC                             >  1:11870647/1‑35
             CAGTTGCATAATTTCTTCGTTCGCCGCGCATTGCC                            <  1:7805302/35‑1
             CAGTTGCATAATTTCTTCGTTCGCCGCGCATTGCC                            <  1:948228/35‑1
             CAGTTGCATAATTTCTTCGTTCGCCGCGCATTGCC                            >  1:6170677/1‑35
             CAGTTGCATAATTTCTTCGTTCGCCGCGCATTGCC                            <  1:13012124/35‑1
             CAGTTGCATAATTTCTTCGTTCGCCGCGCATTGCC                            >  1:16739866/1‑35
             CAGTTGCATAATTTCTTCGTTCGCCGCGCATTGCC                            >  1:20040315/1‑35
              AGTTGCATAATTTCTTCGTTCGCCGCGCATTGCCc                           >  1:1024742/1‑34
              AGTTGCATAATTTCTTCGTTCGCCGCGCATTGCCc                           <  1:3328955/35‑2
              AGTTGCATAATTTCTTCGTTCGCCGCGCATTGCCc                           >  1:11044705/1‑34
              AGTTGCATAATTTCTTCGTTCGCCGCGCATTGCCc                           >  1:6800492/1‑34
              AGTTGCATAATTTCTTCGTTCGCCGCGCATTGCCc                           >  1:20097143/1‑34
              AGTTGCATAATTTCTTCGTTCGCCGCGCATTGCCc                           <  1:16771071/35‑2
              AGTTGCATAATTTCTTCGTTCGCCGCGCATTGCCc                           <  1:17589770/35‑2
               GTTGCATAATTTCTTCGTTCGCCGCGCATTGCCca                          >  1:3564444/1‑33
               GTTGCATAATTTCTTCGTTCGCCGCGCATTGCCca                          >  1:5328282/1‑33
                TTGCATAATTTCTTCGTTCGCCGCGCATTGCCcaa                         >  1:15335595/1‑32
                TTGCATAATTTCTTCGTTCGCCGCGCATTGCCcaa                         >  1:611723/1‑32
                TTGCATAATTTCTTCGTTCGCCGCGCATTGCCcaa                         >  1:5813837/1‑32
                TTGCATAATTTCTTCGTTCGCCGCGCATTGCCcaa                         <  1:2160190/35‑4
                                  ccCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTG       <  1:13554013/33‑1
                                  CGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTG       >  1:10176853/1‑35
                                  CGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTG       >  1:19216754/1‑35
                                  CGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTG       <  1:10240782/35‑1
                                  CGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTG       <  1:15828005/35‑1
                                  CGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTG       >  1:2036906/1‑35
                                   GCCGCGCATTGCCACCCGTCTGCTGCGTCGAGTGC      <  1:4551085/35‑1
                                   GCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGC      >  1:17656133/1‑35
                                   GCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGC      <  1:16615536/35‑1
                                   GCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGC      >  1:16535902/1‑35
                                   GCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGC      >  1:1353857/1‑35
                                    CCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCG     <  1:16092172/35‑1
                                    CCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCG     >  1:6861025/1‑35
                                     CGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCtt    >  1:5153063/1‑33
                                     CGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGT    <  1:4098565/35‑1
                                     CGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGT    <  1:20179673/35‑1
                                      cCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTG   <  1:20099734/34‑1
                                      GCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTG   <  1:7840987/35‑1
                                      GCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTG   >  1:7716244/1‑35
                                      GCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTG   >  1:9647125/1‑35
                                       CGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGA  >  1:17668040/1‑35
                                                                          
ATTCCAGATGCGCCAGTTGCATAATTTCTTCGTTCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/473865‑473904
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgcGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGA  <  REL606/1923465‑1923432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.