New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1593097 | 34 (0.330) | 11 (0.130) | 6/40 | NT | 16.5% | intergenic (+40/+4) | ydeJ/dcp | competence damage‑inducible protein A/dipeptidyl carboxypeptidase II |
? | REL606 | 4085859 = | 83 (0.970) | intergenic (+57/‑92) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F |
AGGCTGGCCTGGCGATATCTCAGGCCAGCCATTGGTGG‑‑‑‑‑‑‑‑‑‑‑ > REL606/1593060‑1593097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggGGGTTTTTTTT > REL606/4085859‑4085869 AGGCTGGCCTGGCGATATCTCAGGCCAGCCCTTGG > 1:17545466/1‑35 AGGCTGGCCTGGCGATATCTCAGGCCAGCCATTGG > 1:10662463/1‑35 AGGCTGGCCTGGCGATATCTCAGGCCAGCCATTGG > 1:3437187/1‑35 AGGCTGGCCTGGCGATATCTCAGGCCAGCCATTGG > 1:19557470/1‑35 GGCTGGCCTGGCGATATCTCAGGCCAGCCATTGGT < 1:14949260/35‑1 GGCGGGCCTGGCGATATCTCAGGCCAGCCATTGGT < 1:17118764/35‑1 GCTGGCCTGGCGATATCTCAGGCCAGCCATTGGTG < 1:5552631/35‑1 CTGGCCTGGCGATATCTCAGGCCAGCCATTGGTGG > 1:9844102/1‑35 CTGGCCTGGCGATATCTCAGGCCAGCCATTGGTGG > 1:15970300/1‑35 CTGGCCTGGCGATATCTCAGGCCAGCCATTGGTGG > 1:15308802/1‑35 TGGCCTGGCGATATCTCAGGCCAGCCATTGGTGGG > 1:17105971/1‑35 TGGCCTGGCGATATCTCAGGCCAGCCATTGGTGGG > 1:6165689/1‑35 GGCCTGGCGATATCTCAGGCCAGCCATTGGTGGGG > 1:7738155/1‑35 GCCTGGCGATATCTCAGGCCAGCCATTGGTGGGGG > 1:7553621/1‑35 CCTGGCGATATCTCAGGCCAGCCATTGGTGGGGGg > 1:609670/1‑34 CCTGGCGATATCTCAGGCCAGCCATTGGTGGGGGT > 1:16092292/1‑35 CTGGCGATATCTCAGGCCAGCCATTGGTGGGGGTT > 1:942740/1‑35 TGGCGATATCTCAGGCCAGCCATTGGTGGGGGTTT > 1:146038/1‑35 TGGCGATATCTCAGGCCAGCCATTGGTGGGGGGTT > 1:13956717/1‑35 GGCGATATCTCAGGCCAGCCATTGGTGGGGGTTTT > 1:1414326/1‑35 GCGATATCTCAGGCCAGCCATTGGTGGGGGTTTTT > 1:9220986/1‑35 CGATATCTCAGGCCAGCCATTGGTGGGGGTTTTTT > 1:7959438/1‑35 GATATCTCAGGCCAGCCATTGGTGGGGGTTTTTTg > 1:15943169/1‑34 GATATCTCAGGCCAGCCATTGGTGGGGGTTTTTTT > 1:475245/1‑35 GATATCTCAGGCCAGCCATTGGTGGGGGTTTTATT > 1:3264642/1‑35 ATATCTCAGGCCAGCCATTGGTGGGGTTTTTTTTT > 1:10162136/1‑35 ATATCTCAGGCCAGCCATTGGTGGGGGTTTTTTgt > 1:20319346/1‑33 ATATCTCAGGCCAGCCATTGGTGGGGGTTTTTTgt > 1:10079397/1‑33 AGGCTGGCCTGGCGATATCTCAGGCCAGCCATTGGTGG‑‑‑‑‑‑‑‑‑‑‑ > REL606/1593060‑1593097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggGGGTTTTTTTT > REL606/4085859‑4085869 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |