New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 58340744 (0.430)12 (0.160) 3/34 NT 15.9% coding (546/1377 nt) pheP phenylalanine transporter
?REL606 3882315 = 96 (1.320)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

CGATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAG  >  REL606/583373‑583439
                                  |                                
cGATCATCGGTATGATCGGCTTTGGCCTGTGGCTG                                  <  1:7977722‑M1/35‑1 (MQ=255)
cGATCATCGGTATGATCGGCTTTGGCCTGTGGCTG                                  <  1:13238033‑M1/35‑1 (MQ=255)
 gATCATCGGTATGATCGGCTTTGGCCTGTGgctgc                                 <  1:7367029/35‑1 (MQ=255)
 gATCATCGGTATGATCGGCTTTGGCCTGGGGCTGg                                 >  1:10957634‑M1/1‑34 (MQ=255)
 gATCATCGGTATGATCGGCTTTGGACTGTGgctgc                                 <  1:1272912/35‑1 (MQ=255)
  atcatcGGTATGATCGGCTTTGGCCTGTGgctgct                                <  1:5617868/35‑1 (MQ=255)
   tcatcGGTATGATCGGCTTTTGCCTCGGgctgggg                               >  1:805306/1‑32 (MQ=19)
   tcatcGGTATGATCGGCTTTGGCCTGTGGctgctg                               <  1:13727914/35‑1 (MQ=255)
   tcatcGGTATGATCGGCTTTGGCCTGTGGCTGggg                               >  1:594318‑M1/1‑32 (MQ=255)
   tcatcGGTATGATCGGCTTTGGCCTGTGGCTGggg                               >  1:11887501‑M1/1‑32 (MQ=255)
   tcatcGGTATGATCGGCTTTGGCCTGTGGCTGatg                               <  1:4772216‑M1/35‑4 (MQ=255)
    catcGGTATGATCGGCTTTGGCCTGTGGCTGCTGt                              <  1:7986432/35‑1 (MQ=255)
    catcGGTATGATCGGCTTTGGCCTGTGGCTGCTGt                              <  1:11367961/35‑1 (MQ=255)
    catcGGTATGATCGGCTTTGGCCTGTGGCTGCTGt                              <  1:15854483/35‑1 (MQ=255)
     atcGGTATGATCGGCTTTGGCATGTGGCTGCTGtt                             <  1:17148579/35‑1 (MQ=255)
      tcGGTATGATCGGCTTTGGCCTGTGGCTGCTGttt                            <  1:12364311/35‑1 (MQ=255)
      tcGGTATGATCGGCTTTGGCCTGTGGCTGCTGttt                            <  1:9360493/35‑1 (MQ=255)
      tcGGTATGATCGGCTTTGGCCTGTGGCTGCTGttt                            <  1:6776550/35‑1 (MQ=255)
       cGGTATGATCGGCTTTGGCCTGTGGCTGgggggtt                           >  1:9099797‑M1/1‑28 (MQ=255)
       cGGTATGATCGGCTTTGGCCTGTGGCTGCTGtttt                           <  1:1275773/35‑1 (MQ=255)
       cGGTATGATCGGCTTTGGCCTGTGGCTGCTGtttt                           <  1:11652279/35‑1 (MQ=255)
        ggTATGATCGGCTTTGGCCTGTGGCTGggggtttt                          >  1:17608560‑M1/1‑27 (MQ=255)
        ggTATGATCGGCTTTGGCCTGTGGCTGggggtttt                          >  1:19584172‑M1/1‑27 (MQ=255)
        ggTATGATCGGCTTTGGCCTGTGGCTGggggtttt                          >  1:13775473‑M1/1‑27 (MQ=255)
        ggTATGATCGGATTTGGCCTGTGGCTGCTGTTTTc                          <  1:17576143/35‑1 (MQ=255)
        ggTATGATCGCCTTTGGCCTGTGGCTGCTGTTTTc                          <  1:20444143/35‑1 (MQ=255)
         gTATGATCGGCTTTGGCCTGTGGCTGgggggtttt                         >  1:10356438‑M1/1‑26 (MQ=255)
         gTATGATCGGCTTTGGCCTGTGGCTGgggggtttt                         >  1:6758062‑M1/1‑26 (MQ=255)
         gTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCt                         <  1:15424440/35‑1 (MQ=255)
          tATGATCGGCTTTGGCCTGTGGCTGgggggttttt                        >  1:1368012‑M1/1‑25 (MQ=255)
          tATGATCGGCTTTGGCCTGTGGCTGgggggttttt                        >  1:14595613‑M1/1‑25 (MQ=255)
          tATGATCGGCTTTGGCCTGTGGCTGgggggttttt                        >  1:10956825‑M1/1‑25 (MQ=255)
          tATGATCGGCTTTGGCCTGTGGCTGGTGgtttttt                        >  1:15972898/1‑32 (MQ=21)
          tATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTg                        <  1:2882694/35‑1 (MQ=255)
          tATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTg                        <  1:13703994/35‑1 (MQ=255)
          tATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTg                        <  1:9702479/35‑1 (MQ=255)
           aTGATCGGCTTTGGCCTGTGGCTGgggggtttttg                       >  1:11917454‑M1/1‑24 (MQ=255)
           aTGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTgg                       <  1:15206209/35‑1 (MQ=255)
           aTGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTgg                       <  1:17804915/35‑1 (MQ=255)
           aTGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTgg                       <  1:5393821/35‑1 (MQ=255)
            tGATCGGCTTTGGCCTGTGGCTGgggggttttttt                      >  1:19089739‑M1/1‑23 (MQ=255)
            tGATCGGCTTTGGCCTGTGGCTGgggggttttttt                      >  1:19733766‑M1/1‑23 (MQ=255)
             gATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTc                     <  1:15126999/35‑1 (MQ=255)
             gATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTc                     <  1:1756692/35‑1 (MQ=255)
             gATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTc                     <  1:11165223/35‑1 (MQ=255)
              aTCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCa                    <  1:15037023/35‑1 (MQ=255)
              aTCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCa                    <  1:10701239/35‑1 (MQ=255)
               tCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCAc                   <  1:14268848/35‑1 (MQ=255)
                cGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCAcg                  <  1:6570873/35‑1 (MQ=255)
                cGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCAcg                  <  1:366304/35‑1 (MQ=255)
                cGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCAcg                  <  1:10051806/35‑1 (MQ=255)
                cGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCAcg                  <  1:1234360/35‑1 (MQ=255)
                cGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCAcg                  <  1:13394086/35‑1 (MQ=255)
                 ggCTTTGGCCTGTGGCTGCTGTTTTCTGGTCAcgg                 <  1:9943335/35‑1 (MQ=255)
                 ggCTTTGGCCTGTGGCTGCTGTTTTCTGGTCAcgg                 <  1:32818/35‑1 (MQ=255)
                 ggCTTTGGCCTGTGGCTGCTGTTTTCTGGTCAcgg                 <  1:12151861/35‑1 (MQ=255)
                 ggCTTTGGCCTGTGGCTGCTGTTTTCTGGTCAcgg                 <  1:15510590/35‑1 (MQ=255)
                   cTTTGGCCTGTGGCTGCTGTTTTCTGGTCAcggcg               <  1:18656259/35‑1 (MQ=255)
                   cTTTGGCCTGTGGCTGCTGTTTTCTGGTCAcggcg               <  1:16064728/35‑1 (MQ=255)
                    tttGGCCTGTGGCTGCTGTTTTCTGGTCAcggcgg              <  1:18454327/35‑1 (MQ=255)
                        gCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCgag          <  1:20592477/35‑1 (MQ=255)
                        gCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCgag          <  1:19016465/35‑1 (MQ=255)
                         ccTGTGGCTGCTGTTTTCTGGTCACGGCGGCgaga         <  1:17149876/35‑1 (MQ=255)
                          cTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGaa        <  1:11732715/35‑1 (MQ=255)
                          cTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGaa        <  1:9154421/35‑1 (MQ=255)
                          cTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGaa        <  1:20167288/35‑1 (MQ=255)
                           tgtgGCTGCTGTTTTCTGGTCACGGCGGCGAGaaa       <  1:7062538/35‑1 (MQ=255)
                           tgtgGCTGCTGTTTTCTGGTCACGGCGGCGAGaaa       <  1:6238002/35‑1 (MQ=255)
                            gtgGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAg      <  1:7118641/35‑1 (MQ=255)
                            gtgGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAg      <  1:7627250/35‑1 (MQ=255)
                             tgGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGc     <  1:13795853/35‑1 (MQ=255)
                              ggCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGcc    <  1:7499517/35‑1 (MQ=255)
                              ggCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGcc    <  1:20059604/35‑1 (MQ=255)
                               gctgctGTTTTCTGGTCACGGCGGCGAGAAAGCCa   <  1:14205882/35‑1 (MQ=255)
                               gctgctGTTTTCTGGTCACGGCGGCGAGAAAGCCa   <  1:8197373/35‑1 (MQ=255)
                               gctgctGTTTTCTGGTCACGGCGGCGAGAAAGCCa   <  1:9081105/35‑1 (MQ=255)
                               gctgctGTTTTCTGGTCACGGCGGCGAGAAAGCCa   <  1:4871900/35‑1 (MQ=255)
                                ctgctgTTTTCTGGTCACGGCGGCGAGAAAGCCAg  <  1:14235308/35‑1 (MQ=255)
                                ctgctgTTTTCTGGTCACGGCGGCGAGAAAGCCAg  <  1:18522538/35‑1 (MQ=255)
                                ctgctgTTTTCTGGTCACGGCGGCGAGAAAGCCAg  <  1:3880591/35‑1 (MQ=255)
                                  |                                
CGATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAG  >  REL606/583373‑583439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.