New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 386696686 (0.840)18 (0.180) 8/46 NT 20.6% intergenic (‑32/+254) bglG/phoU transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
?REL606 = 3887469 56 (0.570)intergenic (‑105/‑47) asnC/asnA DNA‑binding transcriptional dual regulator/asparagine synthetase AsnA

CATAGCAAGGACCTTTTTTATAAACAAAAAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3866932‑3866966
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACACACATGCAATAATCATTCAATAAAAAGCC  <  REL606/3887469‑3887436
                                                                     
CATAGCAAGGACCTTTTTTATAAACAAAAAAACCC                                    <  1:2251182/35‑1
CATAGCAAGGACCTTTTTTATAAACAAAAAAACCC                                    <  1:19888760/35‑1
CATAGCAAGGACCTTTTTTATAAACAAAAAAACCC                                    <  1:14964829/35‑1
                   ATAAAAAAAAAAACCCCGACACACATGCAATAATg                 <  1:7938921/35‑2
                   ATAAAAAAAAAAACCCCGACACACATGCAATAATC                 <  1:6271351/35‑1
                    aAAACAAAAAACCCCCGACACACATGCAATAATCA                <  1:8085933/34‑1
                    aAAAAAAAAAAACCCCGACACACATGCAATAATCA                <  1:17303108/34‑1
                    TAAACAAAAAAACCCCGACACACATGCAATAATCA                <  1:1792088/35‑1
                     AAAAAAAAAAACCCCGACACACATGCAATAATCAT               <  1:6724830/35‑1
                      aaaAAAAAAACCCCGACACACATGCAATAATCATT              <  1:12332169/32‑1
                      aaaAAAAAAACCCCGACACACATGCAATAATCATT              <  1:5507627/32‑1
                       ACAAAAAAACCCCGACACACATGCAATAATCATTC             <  1:852554/35‑1
                        CAAAAAAACCCCGACACACATGCAATAATCATTCA            <  1:16934027/35‑1
                        CAAAAAAACCCCGACACACATGCAATAATCATTCA            <  1:10564395/35‑1
                         cAAAAAAACCCGACACACATGCAATAATCATTCAA           <  1:6887899/34‑1
                         AAAAAAACCCCGACACACATGCAATAATCATTCAA           <  1:12527847/35‑1
                         AAAAAAACCCCGACACACATGCAATAATCATTCAA           <  1:5349149/35‑1
                          AAAAAACCCCGACACACATGCAATAATCATTCAAT          <  1:17039061/35‑1
                          AAAAAACCCCGACACACATGCAATAATCATTCAAT          <  1:3098488/35‑1
                          AAAAAACCCCGACACACATGCAATAATCATTCAAT          <  1:4931110/35‑1
                           AAAAACCCCGACACACATGCAATAATCATTCAATA         <  1:15281719/35‑1
                              AACCCCGACACACATGCAATAATCATTCAATAAAA      <  1:2599450/35‑1
                               ACCCCGACACACATGCAATAATCATTCAATAAAAA     <  1:10019203/35‑1
                                 CCCGACACACATGCAATAATCATTCAATAAAAAGC   <  1:1034588/35‑1
                                  CCGACACACATGCAATAATCATTCAGTAAAAAGCC  <  1:1265646/35‑1
                                  CCGACACACATGCAATAATCATTCAATAAAAAGCC  >  1:4120149/1‑35
                                  CCGACACACATGCAATAATCATTCAATAAAAAGCC  <  1:3360381/35‑1
                                  CCGACACACATGCAATAATCATTCAATAAAAAGCC  <  1:17180400/35‑1
                                  CCGACACACATGCAATAATCATTCAATAAAAAGCC  >  1:15502185/1‑35
                                  CCGACACACATGCAATAATCATTCAATAAAAAGCC  <  1:11942084/35‑1
                                  CCGACACACATGCAATAATCATTCAATAAAAAGCC  >  1:10710946/1‑35
                                  CCGACACACATGCAATAATCATTCAATAAAAAGCC  <  1:9934208/35‑1
                                                                     
CATAGCAAGGACCTTTTTTATAAACAAAAAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3866932‑3866966
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACACACATGCAATAATCATTCAATAAAAAGCC  <  REL606/3887469‑3887436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.