New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1731442 =72 (0.700)7 (0.070) 3/46 NT 11.5% coding (303/627 nt) ydhY predicted 4Fe‑4S ferridoxin‑type protein
?REL606 3480446 = 39 (0.400)coding (628/2394 nt) malP maltodextrin phosphorylase

Only 100 of 137 total aligned reads displayed.

ACAGGCCGCCGCCAGAGCCAACCCCGTTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGA  >  REL606/1731408‑1731476
                                  |                                  
ccgggCCGCCGCCAGAGCCAACCCCGTTGTCGCCa                                    <  1:4531284/32‑1 (MQ=255)
ccgggCCGCCGCCAGAGCCAACCCCGTTGTCGCCa                                    <  1:12231250/32‑1 (MQ=255)
accggtcaagcgtgggatctccccgttgtcggcta                                    >  1:3434565‑M1/35‑35 (MQ=255)
accggtcaagcgtgggatctccccgttgtcggcta                                    >  1:5241236‑M1/35‑35 (MQ=255)
accggtcaagcgtgggatctccccgttgtcggcta                                    <  1:8330811‑M1/1‑1 (MQ=255)
aCAGCCCGCCGCCAGAGCCAACCCCGTTGTCGCCa                                    <  1:15217068/35‑1 (MQ=255)
aCAGCCCGCCGCCAGAGCCAACCCCGTTGTCGCCa                                    <  1:15442528/35‑1 (MQ=255)
 ccggtcaagcgtgggatctccccgttgtcggctac                                   <  1:438862‑M1/2‑2 (MQ=255)
 ccggtcaagcgtgggatctccccgttgtcggctaa                                   <  1:8289746‑M1/2‑1 (MQ=255)
 ccggtcaagcgtgggatctccccgttgtcggctaa                                   <  1:17242474‑M1/2‑1 (MQ=255)
 ccggtcaagcgtgggatctccccgttgtcggctaa                                   <  1:15964466‑M1/2‑1 (MQ=255)
  gggCCGCCGCCAGAGCCAACCCCGTTGTCGCCaaa                                  <  1:6168439/34‑1 (MQ=255)
  cggtcaagcgtgggatctccccgttgtcggctaaa                                  <  1:11809062‑M1/3‑1 (MQ=255)
  aGGCCGCCGCCAGAGCCAACCCCGTTGTCGCCaaa                                  >  1:10623711/1‑35 (MQ=255)
  aGGCCGCCGCCAGAGCCAACCCCGTTGGCGCCaaa                                  >  1:11291809/1‑35 (MQ=255)
   ggtcaagcgtgggatctccccgttgtcggctaaca                                 <  1:16597841‑M1/4‑3 (MQ=255)
   gcccgccgccAGAGCCAACCCCGTTGTCGCCAAAg                                 <  1:19217425/33‑1 (MQ=255)
    gtcaagcgtgggatctccccgttgtcggctaaaca                                <  1:14405608‑M1/5‑3 (MQ=255)
    gtcaagcgtgggatctccccgttgtcggctaaaac                                <  1:1937519‑M1/5‑3 (MQ=255)
    gtcaagcgtgggatctccccgttgtcggctAAagt                                <  1:14380300‑M1/5‑2 (MQ=255)
    gccgccgccAGAGCCAACCCCGTTTTCGCCAAAGa                                >  1:2790242/1‑35 (MQ=255)
    gccgccgccAGAGCCAACCCCGTTGTCGCCAAAGa                                >  1:8877391/1‑35 (MQ=255)
    cccgccgccAGAGCCAACCCCGTTGTCGCCAAAGa                                <  1:1241503/34‑1 (MQ=255)
    cccgccgccAGAGCCAACCCCGTTGTCGCCAAAGa                                >  1:15651573/2‑35 (MQ=255)
     tcaagcgtgggatctccccgttgtcggctaaacta                               <  1:4661173‑M1/6‑4 (MQ=255)
     ccgccgccAGAGCCAACCCCGTTGTCGCAAAAGaa                               <  1:15307573/35‑1 (MQ=255)
      ccccgccAGAGCCAACCCCGTTGTCGCCAAAGaaa                              <  1:5516082/33‑1 (MQ=255)
      caagcgtgggatctccccgttgtcggctaaagtaa                              <  1:10701339‑M1/7‑4 (MQ=255)
      caagcgtgggatctccccgttgtcggctAAACaaa                              <  1:7953395‑M1/7‑1 (MQ=255)
      caagcgtgggatctccccgttgtcggctAAAAaaa                              <  1:1840389‑M1/7‑1 (MQ=255)
       gccgccGGAGCCAACCCCGTTGTCGCCAAAGAaat                             <  1:20266860/35‑1 (MQ=255)
       gccgccAGAGCCAACCCCGTTGTCGCCAAAGAaat                             >  1:17213126/1‑35 (MQ=255)
       aagcgtgggatctccccgttgtcggctAAAgaaaa                             <  1:10302034‑M1/8‑2 (MQ=255)
       aagcgtgggatctccccgttgtcggctAAAGAaat                             <  1:8004776‑M1/8‑1 (MQ=255)
        ccgccAGAGCCAACCCCGTTGTCGCCAAAGAaata                            <  1:12396452/35‑1 (MQ=255)
        ccgccAGAGCAACCCCCGTTGTCGCCAAAGAaata                            <  1:17607961/35‑1 (MQ=37)
        agcgtgggatctccccgttgtcggctAAAGtaatg                            <  1:8399918‑M1/9‑2 (MQ=255)
        agcgtgggatctccccgttgtcggctAAAGAaata                            <  1:2379837‑M1/9‑1 (MQ=255)
         cgccAGAGCCAACCCCGTTGTCGCCAAAGAaataa                           >  1:1320339/1‑35 (MQ=255)
         cgccAGAGCCAACCCCGTTGTCGCCAAAGAaataa                           <  1:7449268/35‑1 (MQ=255)
          gccAGAGCCAACCCCGTTGTCGCCAAAGAaataat                          >  1:4494841/1‑35 (MQ=255)
            cAGAGCCACCCCCGTTGTCGCCAAAGAAATAATTg                        <  1:3317774/35‑1 (MQ=255)
            cAGAGCCAACCCCGTTGTCGCCAAAGAAATAATTg                        >  1:8483701/1‑35 (MQ=255)
            cAGAGCCAACCCCGTTGTCGCCAAAGAAATAATTg                        <  1:10102322/35‑1 (MQ=255)
            cAGAGCCAACCCCGTTGTCGCCAAAGAAATAATTg                        <  1:13371015/35‑1 (MQ=255)
            cAGAGCCAACCCCGTTGTCGCCAAAGAAATAATTg                        <  1:5422114/35‑1 (MQ=255)
             agagCCAACCCCGTTGTCGCCAAAGAAATAATTGc                       <  1:1140987/35‑1 (MQ=255)
              gagCCAACCCCGTTGTCGCCAAAGAAATAATTGCg                      <  1:18447866/35‑1 (MQ=255)
              gagCCAACCCCGTTGTCGCCAAAGAAATAATTGCg                      <  1:10137075/35‑1 (MQ=255)
               agCCAACCCCGTTGTCGCCAAAGAAATAATTGCGa                     <  1:7130663/35‑1 (MQ=255)
                gCCAACCCCGTTGTCGCCAAAGAAATAATTGCGAt                    >  1:14755858/1‑35 (MQ=255)
                gCCAACCCCGTTGTCGCCAAAGAAATAATTGCGAt                    >  1:3412700/1‑35 (MQ=255)
                gCCAACCCCGTTGTAGCCAAAGAAATAATTGCGAt                    <  1:15999936/35‑1 (MQ=255)
                 ccAACCCCGTTGTCGCCAAAGAAATAATTGCGATg                   <  1:5195497/35‑1 (MQ=255)
                 ccAACCCCGTTGTCGCCAAAGAAATAATTGCGATg                   <  1:10793717/35‑1 (MQ=255)
                 ccAACCCCGTTGTCGCCAAAGAAATAATTGCGATg                   >  1:16643446/1‑35 (MQ=255)
                 ccAACCCCGTTGTCGCCAAAGAAATAATTGCGATg                   >  1:13944633/1‑35 (MQ=255)
                 ccAACCCAGTTGTCGCCAAAGAAATAATTGCGATg                   <  1:14137553/35‑1 (MQ=255)
                  cAATCCCGTTGTCGCCAAAGAAATAATTGCGATgg                  <  1:18952434/35‑1 (MQ=255)
                  cAACCCCGTTGTCGCCAAAGAAATAATTGCGATgg                  >  1:5085804/1‑35 (MQ=255)
                   aaCCCCGTTGTCGCCAAAGAAATAATTGCGATGGa                 <  1:10783098/35‑1 (MQ=255)
                   aaCCCCGGTGTCGCCAAAGAAATAATTGCGATGGa                 <  1:8229188/35‑1 (MQ=255)
                    aCCCCGTTGTCGCCAAAGAAATAATTGCGATTGAt                >  1:2984921/1‑35 (MQ=255)
                    aCCCCGTTGTCGCCAAAGAAATAATTGCGATGGAt                >  1:3142630/1‑35 (MQ=255)
                    aCCCCGTTGTCGCCAAAGAAATAATTGCGATGGAt                >  1:20492159/1‑35 (MQ=255)
                    aCCCCGTTGTCGCCAAAGAAATAATTGCGATGGAt                <  1:18806405/35‑1 (MQ=255)
                     ccccGTTGTCGCCAAAGAAATAATTGCGATGGAtt               <  1:2995613/35‑1 (MQ=255)
                      cccGTTGTCGCCAAAGAAATAATTGCGATGGAttt              <  1:11580674/35‑1 (MQ=255)
                      cccGTTGTCGCCAAAGAAATAATTGCGATGGAttt              >  1:453598/1‑35 (MQ=255)
                      cccGTTGTCGCCAAAGAAATAATTGCGATGGAttt              <  1:17832369/35‑1 (MQ=255)
                       ccGTTGTCGCCAAAGAAATAATTGCGATGGAtttt             >  1:15998667/1‑35 (MQ=255)
                        cGTTGTCGCCAAAGAAATAATTGCGATGGATTTTg            >  1:10240426/1‑35 (MQ=255)
                         gTTGTCGCCAAAGAAATAATTGCGATGGATTTTGa           >  1:4286917/1‑35 (MQ=255)
                         gTTGTCGCCAAAGAAATAATTGCGATGGATTTTGa           >  1:14326968/1‑35 (MQ=255)
                         gTTGTCGCCAAAGAAATAATTGCGATGGATTTTGa           <  1:14912638/35‑1 (MQ=255)
                         gTTGTCGCCAAAGAAATAATTGCGATGGATTTTGa           >  1:663963/1‑35 (MQ=255)
                         gTTGTCGCCAAAGAAATAATTGCGATGGATTTTGa           >  1:8504391/1‑35 (MQ=255)
                          ttGTCGCCAAAGAAATAATTGCTATGGATTTTGAt          >  1:7838454/1‑35 (MQ=255)
                          ttGTCGCCAAAGAAATAATTGCGATGGATTTTGAt          >  1:13019761/1‑35 (MQ=255)
                           tGTCGCCAAAGAAATAATTGCGATGGATTTTGATa         >  1:16526168/1‑35 (MQ=255)
                            gTCGCCAAAGAAATAATTGCGATGGATTTTGATAc        <  1:19606072/35‑1 (MQ=255)
                             tCGCCAAAGAAATAATTGCGATGGATTTTGATACg       <  1:10988948/35‑1 (MQ=255)
                              cGCCAAAGAAATAATTGCGATGGATTTTGATACgg      <  1:57689/35‑1 (MQ=255)
                              cGCCAAAGAAATAATTGCGATGGATTTTGATACgg      >  1:8856997/1‑35 (MQ=255)
                              cGCCAAAGAAATAATTGCGATGGATTTTGATACgg      <  1:18774064/35‑1 (MQ=255)
                               gCCAAAGAAATAATTGCGATGGATTTTGATACggg     <  1:5180503/35‑1 (MQ=255)
                               gCCAAAGAAATAATTGCGATGGATTTTGATACggg     <  1:7152708/35‑1 (MQ=255)
                               gCCAAAGAAATAATTGCGATGGATTTTGATACggg     >  1:19090756/1‑35 (MQ=255)
                               gCCAAAGAAATAATTGCGATGGATTTTGATACggg     <  1:13350942/35‑1 (MQ=255)
                                ccAAAGAAATAATTGCGATGGATTTTGATACGGga    >  1:17142044/1‑35 (MQ=255)
                                ccAAAGAAATAATTGCGATGGATTTTGATACGGga    <  1:4879302/35‑1 (MQ=255)
                                ccAAAGAAATAATTGCGATGGATTTTGATACGGga    >  1:19140270/1‑35 (MQ=255)
                                ccAAAGAAATAATTGCGATGGATTTTGATACGGga    <  1:13279173/35‑1 (MQ=255)
                                 cAAAGATATAATTTCGATGTATTTTGATACGGgag   >  1:780098/1‑35 (MQ=25)
                                 cAAAGAAATAATTGCGATGGATTTTGATACGGgag   >  1:10075006/1‑35 (MQ=255)
                                  AAAGAAATAATTGCGATGGATTTTGATACGGgaga  >  1:8204953‑M1/1‑35 (MQ=255)
                                  AAAGAAATAATTGCGATGGATTTTGATACGGgaga  >  1:14093766‑M1/1‑35 (MQ=255)
                                  AAAGAAATAATTGCGATGGATTTTGATACGGgaga  <  1:15822261‑M1/35‑1 (MQ=255)
                                  AAAGAAATAATTGCGATGGATTTTGATACGGgaga  <  1:18558130‑M1/35‑1 (MQ=255)
                                  AAAGAAATAATTGCGATGGATTTTGATACGGgaga  <  1:3055596‑M1/35‑1 (MQ=255)
                                  |                                  
ACAGGCCGCCGCCAGAGCCAACCCCGTTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGA  >  REL606/1731408‑1731476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.