Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,648,342 | IS1 (–) +9 bp | 28.2% | intergenic (+195/‑221) | ynfM → / → asr | predicted transporter/acid shock protein precursor |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1323488 | NA (NA) | 22 (0.210) | 18/48 | NT | 26.6% | noncoding (768/768 nt) | IS1 | repeat region |
? | REL606 | = 1648350 | 38 (0.590) | intergenic (+203/‑221) | ynfM/asr | predicted transporter/acid shock protein precursor | |||||
* | ? | REL606 | 1648342 = | 36 (0.600) | 7 (0.090) | 6/36 | NT | 13.1% | intergenic (+195/‑229) | ynfM/asr | predicted transporter/acid shock protein precursor |
? | REL606 | = 3024712 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
Only 100 of 217 total aligned reads displayed.
TTATTACTGATGCGCAGTTATTCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCAAGACTACTA > REL606/1648316‑1648384 | ttattaCTGATGCGCAGTTATTCTACCGCTTTGTa > 1:5922325/1‑35 (MQ=255) ttattaCTGATGCGCAGTTATTCTACCGCTTTGTa < 1:11212721/35‑1 (MQ=255) ttattaCTGATGCGCAGTTATTCTACCGCTTTGTa > 1:9599141/1‑35 (MQ=255) ttattaCTGATGCGCAGTTATTCTACCGCTTTGTa < 1:14389053/35‑1 (MQ=255) tattaCTGATGCGCAGTTATTCTACCGCTTTGTaa > 1:8204674/1‑35 (MQ=255) tattaCTGATGCGCAGTTATTCTACCGCTTTGTaa < 1:16315751/35‑1 (MQ=255) attaCTGATGCGCAGTTATTCTACCGCTTTGTAag < 1:19066419/35‑1 (MQ=255) attaCTGATGCGCAGTTATTCTACCGCTTTGTAag < 1:9694661/35‑1 (MQ=255) ttaCTGATGCGCAGTTATTCTACCGCTTTGTAagt < 1:6201912/35‑1 (MQ=255) ttaCTGATGCGCAGTTATTCTACCGCTTTGTAagt > 1:18033844/1‑35 (MQ=255) taCTGATGCGCAGTTATTCTACCGCTTTGTAagta > 1:5322778/1‑35 (MQ=255) aCTGATGCGCAGTTATTCTACCGCTTTGTAagtag < 1:17413499/35‑1 (MQ=255) aCTGATGCGCAGTTATTCTACCGCTTTGTAagtag > 1:6410731/1‑35 (MQ=255) aCTGATGCGCAGTTATTCTACCGCTCTGTAagtag > 1:14803576/1‑35 (MQ=255) cTGATGCGCAGTTATTCTACCGCTTTGTAggtaat > 1:2176260‑M2/1‑29 (MQ=255) cTGATGCGCAGTTATTCTACCGCTTTGTAagtagt < 1:7908692/35‑1 (MQ=255) gATGCGCAGTTATTCTACCGCTTTGTAggtaatga < 1:17250351‑M2/35‑9 (MQ=255) gATGCGCAGTTATTATACCGCTTTGTAAGTAGTaa < 1:10543861/35‑1 (MQ=255) aTGCGCAGTTATTCTACCGCTTTGTAggtaatgac < 1:18626996‑M2/35‑10 (MQ=255) aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa < 1:14493077/35‑1 (MQ=255) aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa < 1:10998170/35‑1 (MQ=255) aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa > 1:12134625/1‑35 (MQ=255) aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa > 1:11462002/1‑35 (MQ=255) aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa > 1:9243855/1‑35 (MQ=255) gcgcAGTTATTCTACCGCTTTGTAAGTAGTAAAAt > 1:16541177/1‑35 (MQ=255) gcgcAGTTATTCTACCGCTTTGTAAGTAGTAAAAt < 1:13817037/35‑1 (MQ=255) gcgcAGTTATTCTACCGCTTTGTAAGTAGTAAAAt < 1:11413052/35‑1 (MQ=255) cgcAGTTATTCTACCGCTTTGTAggtaatgactcc > 1:6917878‑M2/1‑23 (MQ=255) cgcAGTTATTCTACCGCTTTGTAAGTAGTAAAATa > 1:19453867/1‑35 (MQ=255) gcAGTTATTCTACCGCTTTGTAAGTAGTAAAATAg < 1:15597593/35‑1 (MQ=255) cAGTTATTCTACCGCTTTGTAggtaatgactccaa < 1:694466‑M2/35‑15 (MQ=255) cAGTTATTCTACCGCTTTGTAAGTAGTAAAATAGt > 1:10079022/1‑35 (MQ=255) aGTTATTCTACCGCTTTGTAAGTAGTAAAATAGtt > 1:2523236/1‑35 (MQ=255) cagcatcaccCGCTTTGTAAGTAGTAAAATAGTTa < 1:4664419‑M1/25‑1 (MQ=255) agcatcaccCGCTTTGTAAGTAGTAAAATAGTTaa < 1:16133894‑M1/26‑1 (MQ=255) tATTCTACCGCTTTGTAAGTAGTAAAATAGTTAAc < 1:17183952/35‑1 (MQ=255) tATTCTACCGCTTTGTAAGTAGTAAAATAGTTAAc < 1:7258380/35‑1 (MQ=255) tATTCTACCGCTTTGTAAGTAGTAAAATAGTTAAc < 1:6617254/35‑1 (MQ=255) aTTCTACCGCTTTGTGggtaatgactccaacttat < 1:13404269‑M2/35‑20 (MQ=255) aTTCTACCGCTTTGTAggtaatgactccaacttat < 1:4433953‑M2/35‑20 (MQ=255) aTTCTACCGCTTTGTAAGTAGTAAAATAGTTAAcc < 1:18999621/35‑1 (MQ=255) ttCTACCGCTTTGTAggtaatgactccaacttatt < 1:5415439‑M2/35‑21 (MQ=255) tcaccCGCTTTGTAAGTAGTAAAATAGTTAACCCg > 1:8561479‑M1/6‑35 (MQ=255) tCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCg < 1:12980634/35‑1 (MQ=255) cTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGa > 1:10164890/1‑35 (MQ=255) cTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGa < 1:11872667/35‑1 (MQ=255) cTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGa > 1:3355789/1‑35 (MQ=255) tACCGCTTTGTAAGTAGTAAAATAGTTAACCCGAt > 1:18244414/1‑35 (MQ=255) tACCGCTTTGTAAGTAGTAAAATAGTTAACCCGAt > 1:1502277/1‑35 (MQ=255) tACCGCTTTGTAAGTAGTAAAATAGTTAACCCGAt < 1:323936/35‑1 (MQ=255) aCCGCTTTGTAAGTAGTAAAATAGTTAACCCGATc > 1:1061415/1‑35 (MQ=255) aCCGCTTTGTAAGTAGTAAAATAGTTAACCCGATc > 1:9863227/1‑35 (MQ=255) cCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCa < 1:7931807‑M1/34‑1 (MQ=255) CGCTTTGTAAGTAGTAAAATAGTTAACCCGATCaa < 1:10295844‑M1/35‑1 (MQ=255) gCTTTGTAggtaatgactccaacttattgatagtg < 1:6341290‑M2/35‑28 (MQ=255) cTTTGTAggtaatgactccaacttattgatagtgt < 1:4271427‑M2/35‑29 (MQ=255) cTTTGTAggtaatgactccaacttattgatagtgt > 1:894323‑M2/1‑7 (MQ=255) CTTTGTAAGTAGTAAAATAGTTAACCCGATCAAGa > 1:18925977‑M1/1‑35 (MQ=255) TTTGTAAGTAGTAAAATAGTTAACCCGATCAAGAc > 1:2580873‑M1/1‑35 (MQ=255) TTTGTAAGTAGTAAAATAGTTAACCCGATCAAGAc < 1:8885596‑M1/35‑1 (MQ=255) ttGTAggtaatgactccaacttattgatagtgttt < 1:7850476‑M2/35‑31 (MQ=255) tGTAggtaatgactccaacttattgatagtgtttt > 1:15507298‑M2/1‑4 (MQ=255) tGTAggtaatgactccaacttattgatagtgtttt < 1:19839231‑M2/35‑32 (MQ=255) tGTAAGTAGTAAAATAGTTAACCCGATCAAGacta < 1:17115881/35‑1 (MQ=255) tGTAAGTAGTAAAATAGTTAACCCGATCAAGacta < 1:2233632/35‑1 (MQ=255) gTAggtaatgactccaacttattgatagtgtttta < 1:3523888‑M2/35‑33 (MQ=255) gTAggtaatgactccaacttattgatagtgtttta < 1:5801848‑M2/35‑33 (MQ=255) gTAggtaatgactccaacttattgatagtgtttta > 1:19263525‑M2/1‑3 (MQ=255) gTAggtaatgactcaaacttattgatagtgtttta > 1:3015911‑M2/1‑3 (MQ=255) tAggtaatgactccaacttattgatagtgttttat > 1:14544647‑M2/1‑2 (MQ=255) tAggtaatgactccaacttattgatagtgttttat > 1:779712‑M2/1‑2 (MQ=255) tAggtaatgactccaacttattgatagtgttttat < 1:16928929‑M2/35‑34 (MQ=255) tAggtaatgactccaacttattgatagtgttttat < 1:19612417‑M2/35‑34 (MQ=255) tAggtaatgactccaacttattgatagtgttttat > 1:11262055‑M2/1‑2 (MQ=255) tAggtaatgactccaacttattgatagtgttttat > 1:8804736‑M2/1‑2 (MQ=255) tAggtaatgactcaaacttattgatagtgttttat > 1:15823261‑M2/1‑2 (MQ=255) tAAGTAGTAAAATAGTTAACCCGATCAAGactact < 1:20430203/35‑1 (MQ=255) tAAGTAGTAAAATAGTTAACCCGATCAAGactact < 1:19855594/35‑1 (MQ=255) aggtaatgactccaacttattgatagtgttttatg < 1:9907913‑M2/35‑35 (MQ=255) aggtaatgactccaacttattgatagtgttttatg > 1:12735630‑M2/1‑1 (MQ=255) aggtaatgactccaacttattgatagtgttttatg < 1:14078689‑M2/35‑35 (MQ=255) aggtaatgactccaacttattgatagtgttttatg < 1:14612108‑M2/35‑35 (MQ=255) aggtaatgactccaacttattgatagtgttttatg > 1:9434045‑M2/1‑1 (MQ=255) aggtaatgactccaacttattgatagtgttttatg < 1:15001548‑M2/35‑35 (MQ=255) aggtaatgactccaacttattgatagtgttttatg > 1:15313148‑M2/1‑1 (MQ=255) aggtaatgactccaacttattgatagtgttttatg < 1:15920930‑M2/35‑35 (MQ=255) aggtaatgactccaacttattgatagtgttttatg > 1:17800940‑M2/1‑1 (MQ=255) aggtaatgactccaacttattgatagtgttttatg > 1:18021606‑M2/1‑1 (MQ=255) aggtaatgactccaacttattgatagtgttttatg < 1:8424231‑M2/35‑35 (MQ=255) aggtaatgactccaacttattgatagtgttttatg < 1:18358241‑M2/35‑35 (MQ=255) aggtaatgactccaacttattgatagtgttttatg > 1:19981360‑M2/1‑1 (MQ=255) aggtaatgactccaacttattgatagtgttttatg < 1:7703726‑M2/35‑35 (MQ=255) aggtaatgactccaacttattgatagtgttttatg < 1:7442237‑M2/35‑35 (MQ=255) aggtaatgactccaacttattgatagtgttttatg > 1:285385‑M2/1‑1 (MQ=255) aggtaatgactccaacttattgatagtgttttatg > 1:7168882‑M2/1‑1 (MQ=255) aggtaatgactccaacttattgatagtgttttatg > 1:3439584‑M2/1‑1 (MQ=255) aggtaatgactccaacttattgatagtgttttatg < 1:4112570‑M2/35‑35 (MQ=255) aggtaatgactccaacttattgatagtgttttatg < 1:493158‑M2/35‑35 (MQ=255) aggtaatgactcaaacttattgatagtgttttatg > 1:3850008‑M2/1‑1 (MQ=255) aaGTAGTAAAATAGTTAACCCGATCAAGActacta < 1:20346104/35‑1 (MQ=255) | TTATTACTGATGCGCAGTTATTCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCAAGACTACTA > REL606/1648316‑1648384 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |