Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 3,015,771 IS150 (–) +3 bp 97.6% coding (1192‑1194/1677 nt) ECB_02816 → KpsD protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2775877NA (NA)109 (1.160) 37/44 NT 97.9% noncoding (1/1443 nt) IS150 repeat region
?REL606 3015771 = 2 (0.020)coding (1192/1677 nt) ECB_02816 KpsD protein
* ? REL606 = 30157733 (0.040)97 (0.980) 40/46 NT 96.6% coding (1194/1677 nt) ECB_02816 KpsD protein
?REL606 = 3894996 NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 350 total aligned reads displayed.

ATCTCTCGCTGCAAAAGCTGGAGGAAGCCTCACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCC  >  REL606/3015739‑3015807
                                  |                                  
aTCTCTCGCTGCAAAAGCTGGAGGAAGCCTCACtt                                    <  1:1934452/35‑1 (MQ=255)
  ttcatcgtccaacaaaatgggtgcagtacaCTTTc                                  >  1:10585671‑M2/31‑35 (MQ=255)
  ctctcGCTGCAAAAGCTGGAGGAAGCCTCACTTtg                                  <  1:11507080‑M1/35‑3 (MQ=255)
   tcatcgtccaacaagatgggtgcagtacaCTTTCt                                 >  1:8237403‑M2/30‑35 (MQ=255)
   tcatcgtccaacaaaatgggtgcagtacaCTTTCt                                 >  1:3602582‑M2/30‑35 (MQ=255)
   tcatcgtccaacaaaatgggtgcagtacaCTTTCt                                 >  1:12178769‑M2/30‑35 (MQ=255)
    catcgtccaacaaaatgggtgcagtacaCTTTCTg                                <  1:19019247‑M2/7‑1 (MQ=255)
    catcgtccaacaaaatgggtgcagtacaCTTTCTg                                <  1:15619745‑M2/7‑1 (MQ=255)
    catcgtccaacaaaatgggtgcagtacaCTCTctt                                <  1:10129657‑M2/7‑2 (MQ=255)
     tcGCTGCAAAAGCTGGAGTAAGCCTCACTTtgtac                               >  1:591700‑M1/1‑30 (MQ=255)
     atcgtccaacaaaatgggtgcagtacaCTTTCTGc                               <  1:18571660‑M2/8‑1 (MQ=255)
      cGCTGCAAAAGCTGGAGGAAGCCTCACTTtgtact                              <  1:10612558‑M1/35‑7 (MQ=255)
      cGCTGCAAAAGCTGGAGGAAGCCTCACTTtgtact                              <  1:6295033‑M1/35‑7 (MQ=255)
       gCTGCAAAAGCTGGAGGAAGCCTCACTTtgtactg                             >  1:5065151‑M1/1‑28 (MQ=255)
       gCTGCAAAAGCTGGAGGAAGCCTCACTTtgtactg                             <  1:13367379‑M1/35‑8 (MQ=255)
       cgtccaacaaaatgggtgcagtacaCTTTCTGccc                             <  1:12376254‑M2/10‑1 (MQ=255)
        gtccaacaaaatgggtgcagtacaCTTTCTGCCCa                            <  1:200984‑M2/11‑1 (MQ=255)
        gtccaacaaaatgggtgcagtacaCTTTCTGCCCa                            >  1:2115644‑M2/25‑35 (MQ=255)
        gtccaacaaaatgggtgcagtacaCTTTCTGCCCa                            <  1:16002933‑M2/11‑1 (MQ=255)
         tccaacaaaatgggtgcagtacaCTTTCTGCCCAg                           <  1:8892937‑M2/12‑1 (MQ=255)
         tGCAAAAGCTGGAGGAAGCCTCACTTtgtactgac                           >  1:2810173‑M1/1‑26 (MQ=255)
         tGCAAAAGCTGGAGGAAGCCTCACTTtgtactgac                           <  1:7783829‑M1/35‑10 (MQ=255)
          gCAAAAGCTGGAGGAAGCCTCACTTtgtactgacc                          >  1:11668331‑M1/1‑25 (MQ=255)
          gCAAAAGCTGGAGGAAGCCTCACTTtgtactgacc                          <  1:12652253‑M1/35‑11 (MQ=255)
          gCAAAAGCTGGAGGAAGCCTCACTTtgtactgacc                          >  1:5339020‑M1/1‑25 (MQ=255)
          gCAAAAGCTGGAGGAAGCCTCACTTtgtactgacc                          <  1:1288707‑M1/35‑11 (MQ=255)
          ccaacaaaatgggtgcagtacaCTTTCTGCCCAGt                          <  1:18462505‑M2/13‑1 (MQ=255)
           cAAAAGCTGGAGGAAGCCTCACTTtgtactgaccc                         >  1:17540841‑M1/1‑24 (MQ=255)
            aacaaaatgggtgcagtacaCTTTCTGCCCAGTCa                        <  1:18263547‑M2/15‑1 (MQ=255)
            aacaaaatgggtgcagtacaCTTTCTGCCCAGTCa                        <  1:15815354‑M2/15‑1 (MQ=255)
            aaaaGCTGGAGGAAGCCTCACTTtgtactgacccc                        <  1:4499658‑M1/35‑13 (MQ=255)
            aaaaGCTGGAGGAAGCCTCACTTtgtactgacccc                        <  1:12251268‑M1/35‑13 (MQ=255)
             acaaaatgggtgcagtacaCTTTCTGCCCAGTCAt                       >  1:19286715‑M2/20‑35 (MQ=255)
             acaaaatgggtgcagtacaCTTTCTGCCCAGTCAt                       <  1:1438419‑M2/16‑1 (MQ=255)
             aaaGCTGGAGGAAGCCTCACTTtgtactgacccca                       >  1:20249177‑M1/1‑22 (MQ=255)
             aaaGCGGGAGGAAGCCTCACTTtgtactgacccca                       <  1:20401881‑M1/35‑14 (MQ=255)
              aaGCTGGAGGAAGCCTCACTTtgtactgaccccaa                      <  1:19489234‑M1/35‑15 (MQ=255)
               aaaatgtgtgcagtacaCTTTCTGCCCAGTCATcc                     >  1:15094267‑M2/18‑35 (MQ=255)
               aaaatgggtgcagtacaCTTTCTGCCCAGTCATcc                     <  1:8980174‑M2/18‑1 (MQ=255)
               aaaatgggtgcagtacaCTTTCTGCCCAGTCATcc                     <  1:5710199‑M2/18‑1 (MQ=255)
               aaaatgggtgcagtacaCTTTCTGCCCAGTCATcc                     <  1:10993932‑M2/18‑1 (MQ=255)
               aaaatgggtgcagtacaCTTTCTGCCCAGTCATcc                     >  1:14968577‑M2/18‑35 (MQ=255)
               aaaatgggtgcagtacaCTTTCTGCCCAGTCATcc                     >  1:9695032‑M2/18‑35 (MQ=255)
               aaaatgggtgcagtacaCTTTCTGCACAGTCATcc                     <  1:7277826‑M2/18‑1 (MQ=255)
               aGCTGGAGGAAGCCTCACTTtgtactgaccccaaa                     <  1:5473164‑M1/35‑16 (MQ=255)
                gCTGGAGGAAGCCTCACTTtgtactgaccccaaaa                    <  1:12468061‑M1/35‑17 (MQ=255)
                aaatgggtgcagtacaCTTTCTGCACAGTCATcca                    <  1:6067611‑M2/19‑1 (MQ=255)
                 cTGGAGGAAGCCTCACTTtgtactgaccccaaaaa                   <  1:16849819‑M1/35‑18 (MQ=255)
                 cTGGAGGAAGCCTCACTTtgtactgaccccaaaaa                   <  1:16416681‑M1/35‑18 (MQ=255)
                 aattggtgcagtacaCTTTCTGCCCAGTCATccac                   >  1:7176387‑M2/16‑35 (MQ=255)
                 aatgggtgcagtacaCTTTCTGCCCAGTCATccac                   >  1:3259591‑M2/16‑35 (MQ=255)
                 aatgggtgcagtacaCTTTCTGCCCAGTCATccac                   >  1:6693452‑M2/16‑35 (MQ=255)
                  tGGAGGAAGCCTCACTTtgtactgaccccaaaaag                  >  1:4751912‑M1/1‑17 (MQ=255)
                  tGGAGGAAGCCTCACTTtgtactgaccccaaaaag                  >  1:19697953‑M1/1‑17 (MQ=255)
                  tGGAGGAAGCCTCACTTtgtactgaccccaaaaag                  >  1:17425565‑M1/1‑17 (MQ=255)
                   tgggtgcagtacaCTTTCTGCCCAGTCATccacca                 <  1:1531768‑M2/22‑1 (MQ=255)
                    gggtgcagtacaCTTTCTGCCCAGTCATCCACCaa                >  1:9573095‑M2/13‑35 (MQ=255)
                     ggtgcagtacaCTTTCTGCCCAGTCATCCACCaaa               >  1:2351296‑M2/12‑35 (MQ=255)
                       tgcagtacaCTTTCTGCCCAGTCATCCACCAaaga             <  1:13900448‑M2/26‑1 (MQ=255)
                       gaAGCCTCACTTtgtactgaccccaaaaagttgga             >  1:9969419‑M1/1‑12 (MQ=255)
                       gaAGCCTCACTTtgtactgaccccaaaaagttgga             <  1:1469018‑M1/35‑24 (MQ=255)
                        gcagtacaCTTTCTGCCCAGTCATCCACCAaagaa            >  1:2393980‑M2/9‑35 (MQ=255)
                        gcagtacaCTTTCTGCCCAGTCATCCACCAaagaa            >  1:9133667‑M2/9‑35 (MQ=255)
                        aaGCCTCACTTtgtactgaccccaaaaagttggac            <  1:4187900‑M1/35‑25 (MQ=255)
                         cagtacaCTTTCTGCCCAGTCATCCACCAaagaag           >  1:17722129‑M2/8‑35 (MQ=255)
                         aGCCTCACTTtgtactgaccccaaaaagttggaca           >  1:18762546‑M1/1‑10 (MQ=255)
                         aGCCTCACTTtgtactgaccccaaaaagttggaca           <  1:18036557‑M1/35‑26 (MQ=255)
                         aGCCTCACTTTCTGCCCAGTCATCCACCAaagaag           >  1:4030529/1‑35 (MQ=255)
                          gcatcacTTtgtactgaccccaaaaagttggacag          <  1:16596857‑M1/32‑27 (MQ=255)
                          gCCTCACTTtgtactgaccccaaaaagttggacag          >  1:11354957‑M1/1‑9 (MQ=255)
                          gCCTCACTTtgtactgaccccaaaaagttggacag          <  1:8487066‑M1/35‑27 (MQ=255)
                           gtacaCTTTCTGCCCAGTCATCCACCAaagaagaa         <  1:6923071‑M2/30‑1 (MQ=255)
                           gtacaCTTTCTGCCCAGTCATCCACCAaagaagaa         >  1:10838891‑M2/6‑35 (MQ=255)
                           ccTCACTTtgtactgaccccaaaaagttggacagt         >  1:17872805‑M1/1‑8 (MQ=255)
                             tCACTTtgtactgaccccaaaaagttggacagtta       <  1:13239774‑M1/35‑30 (MQ=255)
                             acaCTTTCTGCCCAGTCATCCACCAAAGAAGAAGc       <  1:18973625‑M2/32‑1 (MQ=255)
                             acaCTTTCTGCCCAGTCATCCACCAAAGAAGAAGc       <  1:8743355‑M2/32‑1 (MQ=255)
                              caCTTTCTGCCCAGTCATCCACCAAAGAAGAAGcc      >  1:4622795‑M2/3‑35 (MQ=255)
                              caCTTTCTGCCCAGTCATCCACCAAAGAAGAAGcc      <  1:9323085‑M2/33‑1 (MQ=255)
                              caCTTTCTGCCCAGTCATCCACCAAAGAAGAAGcc      >  1:20528379‑M2/3‑35 (MQ=255)
                              caCTTTATGCCCAGTCATCCACCAAAGAAGAAGcc      <  1:7499478‑M2/33‑1 (MQ=255)
                               aaattgtactgaccccaaaaagttggacagttaaa     >  1:16972545‑M1/4‑4 (MQ=255)
                               aCTTtgtactgaccccaaaaagttggacagttaaa     <  1:13788786‑M1/35‑32 (MQ=255)
                               aCTTtgtactgaccccaaaaagttggacagttaaa     >  1:7884569‑M1/1‑4 (MQ=255)
                               aCTGtgtactgaccccaaaaagttggacagttaaa     >  1:1037058‑M1/1‑4 (MQ=255)
                                cTTtgtactgaccccaaaaagttggacagttaaac    <  1:643702‑M1/35‑33 (MQ=255)
                                cTTTCTGCCCAGTCATCCACCAAAGAAGAagccag    <  1:3788214/35‑1 (MQ=255)
                                aattgtactgaccccaaaaagttggacagttaaac    <  1:7369908‑M1/33‑33 (MQ=255)
                                aattgtactgaccccaaaaagttggacagttaaac    <  1:14120628‑M1/33‑33 (MQ=255)
                                aattgtactgaccccaaaaagttggacagttaaac    <  1:3022153‑M1/33‑33 (MQ=255)
                                 tttgtactgaccccaaaaagttggacagttaaaca   <  1:8301461‑M1/35‑34 (MQ=255)
                                 tttgtactgaccccaaaaagttggacagttaaaca   >  1:3406202‑M1/1‑2 (MQ=255)
                                 tttCTGCCCAGTCATCCACCCAAGCAGAagccacc   >  1:6600989/1‑33 (MQ=25)
                                 tttCTGCCCAGTCATCCACCAAAGAAGAagccagc   >  1:16258913/1‑35 (MQ=255)
                                 attgtactgaccccaaaaagttggacagttaaaca   >  1:1981109‑M1/2‑2 (MQ=255)
                                 attgtactgaccccaaaaagttggacagttaaaca   <  1:9859825‑M1/34‑34 (MQ=255)
                                 attgtactgaccccaaaaagttggacagttaaaca   >  1:19982592‑M1/2‑2 (MQ=255)
                                  ttgtactgaccccaaaaagttggacagttaaacac  <  1:19592764‑M1/35‑35 (MQ=255)
                                  ttgtactgaccccaaaaagttggacagttaaacac  >  1:11165181‑M1/1‑1 (MQ=255)
                                  ttgtactgaccccaaaaagttggacagttaaacac  >  1:17311254‑M1/1‑1 (MQ=255)
                                  |                                  
ATCTCTCGCTGCAAAAGCTGGAGGAAGCCTCACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCC  >  REL606/3015739‑3015807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.