New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 932696 =61 (0.590)12 (0.180) 3/32 NT 18.9% coding (59/696 nt) aqpZ aquaporin Z
?REL606 = 3040633 62 (0.910)coding (654/810 nt) pppA bifunctional prepilin leader peptidase/ methylase

AGCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/932737‑932696
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggctgGGTGGGGGCGTTATCACTGCCCAACGTT  <  REL606/3040633‑3040606
                                                                      
AGCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTG                                     <  1:16809254/35‑1
AGCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTG                                     <  1:10507667/35‑1
AGCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTG                                     >  1:8165416/1‑35
AGCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTG                                     >  1:17081680/1‑35
AGCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTG                                     <  1:2529134/35‑1
AGCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTG                                     <  1:4909238/35‑1
AGCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTG                                     <  1:1238403/35‑1
 GCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTGG                                    >  1:14288185/1‑35
 GCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTGG                                    >  1:2465507/1‑35
 GCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTGG                                    <  1:3283900/35‑1
 GCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTGG                                    >  1:5062552/1‑35
 GCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTGG                                    >  1:6725117/1‑35
 GCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTGG                                    >  1:7752135/1‑35
  CTGAATGTTTTGGTACTTTCTGGCTTGTTTTTGGT                                   <  1:4261376/35‑1
  CTGAATGTTTTGGTACTTTCTGGCTTGTTTTTGGT                                   <  1:291949/35‑1
  CTGAATGTTTTGGTACTTTCTGGCTTGTTTTTGGT                                   >  1:14134124/1‑35
  CTGAATGTTTTGGTACTTTCTGGCTTGTTTTTGGT                                   <  1:11901202/35‑1
  CTGAATGTTTTGGTACTTTCTGGCTTGTTTTTGGT                                   <  1:20223746/35‑1
   TGAATGTTTTGGTACTTTCTGGCTTGTTTTTGGTG                                  <  1:4172468/35‑1
   TGAATGTTTTGGTACTTTCTGGCTTGTTTTTGGTG                                  <  1:4583777/35‑1
   TGAATGTTTTGGTACTTTCTGGCTTGTTTTTGGTG                                  >  1:19225729/1‑35
   TGAATGTTTTGGTACTTTCTGGCTTGTTTTTGGTG                                  >  1:17132988/1‑35
   TGAATGTTTTGGTACTTTCTGGCTTGTTTTTGGTG                                  <  1:16609612/35‑1
    GAATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGG                                 >  1:3553642/1‑35
    GAATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGG                                 <  1:20017716/35‑1
    GAATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGG                                 >  1:8300262/1‑35
    GAATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGG                                 >  1:10294218/1‑35
    GAATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGG                                 <  1:11969353/35‑1
    GAATGTTTTGGTACTTTATGGCTTGTTTTTGGTGG                                 <  1:19850780/35‑1
     AATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGC                                <  1:2380629/35‑1
     AATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGC                                <  1:7103861/35‑1
     AATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGC                                >  1:3880567/1‑35
      ATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGgt                               >  1:2437992/1‑33
      ATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGgt                               >  1:15084011/1‑33
      ATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGCT                               <  1:18970176/35‑1
      ATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGCT                               <  1:12668394/35‑1
      ATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGCT                               <  1:17249206/35‑1
      ATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGCT                               <  1:9687465/35‑1
       TGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGGTG                              >  1:3618165/1‑35
       TGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGCTt                              >  1:9097101/1‑34
       TGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGCTG                              <  1:13181164/35‑1
       TGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGCTG                              <  1:1197132/35‑1
       TGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGCTG                              <  1:20199493/35‑1
       TGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGCTG                              >  1:20492704/1‑35
        GTTTTGGTACTTTCTGGCTTGTTTTTTGTGGCTGG                             >  1:3590767/1‑35
        GTTTTGGTACTTTCTGGCTTGTTTTTGGTGGGTGG                             >  1:15182456/1‑35
        GTTTTGGTACTTTCTGGCTTGTTTTTGGTGGCTGG                             >  1:13569776/1‑35
         TTTTGGTACTTTCTGGCTTGTTTTTGGTGGCTGGG                            >  1:15622337/1‑35
          TTTGGTACTTTCTGGCTTGTTTTTGGTGGCTGGGg                           >  1:13503916/1‑34
          TTTGGTACTTTCTGGCTTGTTTTTGGTGGCTGGGg                           >  1:17016678/1‑34
          TTTGGTACTTTCTGGCTTGTTTTTGGCGGCTGGGg                           >  1:13219171/1‑34
           TTGGTACTTTCTGGCTTGTTTTTGGTGGCTGGGgg                          >  1:7737844/1‑33
           TTGGTACTTTCTGGCTTGTTTTTGGTGGCTGGGgg                          >  1:5409885/1‑33
           TTGGTACTTTCTGGCTTGTTTTTGGTGGCTGGGgg                          >  1:18576239/1‑33
           TTGGTACTTTCTGGCTTGTTTTTGGTGGCTGGGgg                          >  1:2580358/1‑33
            TGGTACTTTCTGGCTTGTTTTTGGTGGCTGGGGGG                         >  1:10831051/1‑35
             GGTACTTTCTGGCTTGTTTTTGGTGGCTGGGGGGG                        >  1:11003722/1‑35
             GGTACTTTCTGGCTTGTTTTTGGTGGCTGGGGGGG                        >  1:13849754/1‑35
             GGTACTTTCTGGCTTGTTTTTGGTGGCTGGGGGGG                        >  1:17321129/1‑35
             GGTACTTTCTGGCTTGTTTTTGGTGGCTGGGGGGG                        >  1:12108399/1‑35
             GGTACTTTCTGGCTTGTTTTTGGTGGCTGGGGGGG                        >  1:20118680/1‑35
              GTACTTTCTGGCTTGTTTTTGGTGGCTGGGGGGGG                       >  1:4724000/1‑35
              GTACTTTCTGGCTTGTTTTTGGTGGCTGGGGGGGG                       >  1:20175815/1‑35
              GTACTTTCTGGCTTGTTTTTGGTGGCTGGGGGGGG                       >  1:15965649/1‑35
               TACTTTCTGGCTTGTTTTTGGTGGCTGGGGGGGGG                      >  1:5924314/1‑35
               TACTTTCTGGCTTGTTTTTGGTGGCTGGGGGGGGG                      >  1:4651634/1‑35
                ACTTTCTGGCTTGTTTTTGGTGGCTGGGGGGGGGg                     >  1:17952655/1‑34
                ACTTTCTGGCTTGTTTTTGGTGGCTGGGGGGGGGg                     >  1:7412818/1‑34
                                  GGTGGCTGGGTGGGGGCGTTATCACTGCCCAACGT   <  1:14141979/35‑1
                                  GGTGGCTGGGTGGGGGCGTTATCACTGCCCAACGT   <  1:17123334/35‑1
                                  GGTGGCTGGGTGGGGGCGTTATAACTGCCCAACGT   <  1:15844783/35‑1
                                  GGTGGCTAGGTGGGGGCGTTATCACTGCCCAACGT   <  1:13006885/35‑1
                                   GTGGCTGGGTGGGGGCGTTATCACTGCCCAACGTT  <  1:7591460/35‑1
                                   GTGGCTGGGTGGGGGCGTTATCACTGCCCAACGTT  <  1:8158929/35‑1
                                                                      
AGCTGAATGTTTTGGTACTTTCTGGCTTGTTTTTGGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/932737‑932696
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggctgGGTGGGGGCGTTATCACTGCCCAACGTT  <  REL606/3040633‑3040606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.