New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1924695 =91 (0.890)6 (0.100) 3/28 NT 9.9% coding (52/612 nt) ruvA Holliday junction DNA helicase motor protein
?REL606 = 2696376 56 (0.930)coding (277/2145 nt) nrdE ribonucleotide‑diphosphate reductase alpha subunit

Only 100 of 160 total aligned reads displayed.

TCGCGACTTTGTCATTACGCTGTTTGCCCACGCACACACCAGCGGTTTTCGTTTCCAGACATTCCTCGG  >  REL606/2696342‑2696410
                                  |                                   
tcGCGACTTTGTCATTACGCTGTTTGCCCACGcac                                     <  1:12406653/35‑1 (MQ=255)
tcGCGACTTTGTCATTACGCTGTTTGCCCACGcac                                     >  1:20349432/1‑35 (MQ=255)
 cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa                                    >  1:13832680‑M2/1‑34 (MQ=255)
 cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa                                    >  1:15174883‑M2/1‑34 (MQ=255)
 cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa                                    <  1:5699525‑M2/35‑2 (MQ=255)
 cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa                                    <  1:16854158‑M2/35‑2 (MQ=255)
 cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa                                    >  1:8077655‑M2/1‑34 (MQ=255)
 cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa                                    >  1:18924560‑M2/1‑34 (MQ=255)
 cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa                                    <  1:2446258‑M2/35‑2 (MQ=255)
  gcgACTTTGTCATTACGCTGTTTGCCCACGCACac                                   >  1:18603019‑M2/1‑33 (MQ=255)
   cgACTTTGTCATTACGCTGTTTGCCCACGCACaca                                  <  1:3249631‑M2/35‑4 (MQ=255)
   cgACTTTGTCATTACGCTGTTTGCCCACGCACaca                                  <  1:7427905‑M2/35‑4 (MQ=255)
    gACTTTGTCATTACGCTGTTTGCCCACGCACacac                                 <  1:11109301‑M2/35‑5 (MQ=255)
    gACTTTGTCATTACGCTGTTTGCCCACGCACacac                                 >  1:14920818‑M2/1‑31 (MQ=255)
    gACTTTGTCATTACGCTGTCTGCCCACGCACacac                                 <  1:4370727‑M2/35‑5 (MQ=255)
     tctTTGTCATTACGCTGTTTGCCCACGCACacacc                                >  1:9007572‑M2/2‑30 (MQ=255)
     aCTTTGTCATTACGCTGTTTGCCCACGCACacacc                                <  1:12117025‑M2/35‑6 (MQ=255)
     aCTTTGTCATTACGCTGTTTGCCCACGCACacacc                                <  1:14932280‑M2/35‑6 (MQ=255)
     aCTTTGTCATTACGCTGTTTGCCCACGCACacacc                                >  1:1338870‑M2/1‑30 (MQ=255)
      cTTTGTCATTACGCTGTTTGCCCCCGCACacacca                               <  1:13551364‑M2/35‑7 (MQ=255)
      cTTTGTCATTACGCTGTTTGCCCACGCACacacca                               >  1:3360865‑M2/1‑29 (MQ=255)
      cTTTGTCATTACGCTGTTTGCCCACGCACacacca                               <  1:16131602‑M2/35‑7 (MQ=255)
      cTTTGTCATTACGCTGTTTGCCCACGCACacacca                               >  1:274186‑M2/1‑29 (MQ=255)
      cTTTGTCATTACGCTGTTTGCCCACGCACacacca                               <  1:10130338‑M2/35‑7 (MQ=255)
      cTTTGTCATTACGCTGTTTGCCCACGCACacacca                               >  1:10638718‑M2/1‑29 (MQ=255)
      cTTTGTCATTACGCTGTTTGCCCACGCACacacca                               >  1:7980505‑M2/1‑29 (MQ=255)
       tttGTCATTACGCTGTTTGCCCACGCACacaccag                              >  1:17815271‑M2/1‑28 (MQ=255)
       tttGTCATTACGCTGTTTGCCCACGCACacaccag                              >  1:12233020‑M2/1‑28 (MQ=255)
       tttGTCATTACGCTGTTTGCCCACGCACacaccag                              >  1:6379777‑M2/1‑28 (MQ=255)
        ttGTCATTACGCTGTTTGCCCACGCACacaccagc                             >  1:1504966‑M2/1‑27 (MQ=255)
        ttGTCATTACGCTGTTTGCCCACGCACacaccagc                             <  1:11362318‑M2/35‑9 (MQ=255)
        ttGTCATTACGCTGTTTGCCCACGCACacaccagc                             <  1:11706261‑M2/35‑9 (MQ=255)
        ttGTCATTACGCTGTTTGCCCACGCACacaccagc                             >  1:17616631‑M2/1‑27 (MQ=255)
        ttGTCATTACGCTGTTTGCCCACGCACacaccagc                             >  1:16942207‑M2/1‑27 (MQ=255)
        ttGTCATTACGCTGTTTGCCCACGCACacaccagc                             >  1:6643591‑M2/1‑27 (MQ=255)
         tGTCATTACGCTGTTTGCCCACGCACacaccagcg                            >  1:8623612‑M2/1‑26 (MQ=255)
         tGTCATTACGCTGTTTGCCCACGCACacaccagcg                            <  1:12306852‑M2/35‑10 (MQ=255)
         tGTCATTACGCTGTTTGCCCACGCACacaccagcg                            >  1:13098984‑M2/1‑26 (MQ=255)
         tGTCATTACGCTGTTTGCCCACGCACacaccagcg                            >  1:5874711‑M2/1‑26 (MQ=255)
         tGTCATTACGCTGTTTGCCCACGCACacaccagcg                            >  1:2652928‑M2/1‑26 (MQ=255)
           tCATTACGCTGTTTGCCCACGCACacaccagcggg                          <  1:16769424‑M2/35‑12 (MQ=255)
           tCATTACGCTGTTTGCCCACGCACacaccagcggg                          <  1:33062‑M2/35‑12 (MQ=255)
           tCATTACGCTGTTTGCCCACGCACacaccagcggg                          <  1:4268382‑M2/35‑12 (MQ=255)
           tCATTACGCTGTTTGCCCACGCACacaccagcggg                          <  1:18977593‑M2/35‑12 (MQ=255)
           tCATTACGCTGTTTGCCCACGCACACACCAGCGGt                         <  1:15386549/35‑1 (MQ=255)
             aTTACGCTGTTTGCCCACGCACACACCAGCGGttt                       <  1:8529111/35‑1 (MQ=255)
              ttACGCTGTTTGCCCACGCACACACCAGCGGtttt                      <  1:18959364/35‑1 (MQ=255)
              ttACGCTGTTTGCCCACGCACACACCAGCGGtttt                      <  1:15926065/35‑1 (MQ=255)
               tACGCTGTTTGCCCACGCACacaccagcggggttt                      <  1:17264953‑M2/35‑16 (MQ=255)
               tACGCTGTTTGCCCACGCACACACCAGCGGgtttt                     >  1:19668804/1‑34 (MQ=255)
               tACGCTGTTTGCCCACGCACACACCAGCGGgtttt                     >  1:7708899/1‑34 (MQ=255)
               tACGCTGTTTGCCCACGCACACACCAGCGGgtttg                     >  1:5395935/1‑34 (MQ=255)
               tACGCTGTTTGCCCACGCACACACCAGCGGTTTTc                     <  1:14465871/35‑1 (MQ=255)
               tACGCTGTTTGCCCACGCACACACCAGCGGTTTTc                     <  1:14562996/35‑1 (MQ=255)
                aCGCTGTTTGCCCACGCACacaccagcggggtttg                     <  1:13173028‑M2/35‑17 (MQ=255)
                aCGCTGTTTGCCCACGCACACACCAGCGGTTTTCg                    <  1:20365860/35‑1 (MQ=255)
                aCGCTGTTTGCCCACGCACACACCAGCGGTTTTCg                    <  1:11498698/35‑1 (MQ=255)
                 cGCTGTTTGCCCACGCACacaccagcggggtttgt                    <  1:4820744‑M2/35‑18 (MQ=255)
                 cGCTGTTTGCCCACGCACacaccagcggggtttgg                    <  1:18040694‑M2/35‑18 (MQ=255)
                 cGCTGTTTGCCCACGCACACACCAGCGGTTTTCGt                   <  1:18452278/35‑1 (MQ=255)
                  gCTGTTTGCCCACGCACacaccagcggggtttgtt                   <  1:18042462‑M2/35‑19 (MQ=255)
                  gCTGTTTGCCCACGCACACACCAGCGGTTTTCGtt                  <  1:3740241/35‑1 (MQ=255)
                  gCTGTTTGCCCACGCACACACCAGCGGTTTTCGtt                  <  1:2067438/35‑1 (MQ=255)
                  gCTGTTTGCCCACGCACACACCAGCGGTTTTCGtt                  <  1:5879167/35‑1 (MQ=255)
                  gCTGTTTGCCCACGCACACACCAGCGGTTTTCGtt                  <  1:13592580/35‑1 (MQ=255)
                  gCTGTTTGCCCACGCACACACCAGCGGGGTTCGtt                  >  1:9558352/1‑35 (MQ=37)
                   cTGTTTGCCCACGCACACACCAGCGGTTTTCGttt                 <  1:13344912/35‑1 (MQ=255)
                   cTGTTTGCCCACGCACACACCAGCGGGTTTTGttt                 >  1:9190019/1‑35 (MQ=37)
                    tGTTTGCCCACGCACACACCAGCGGTTTTCGTTTc                <  1:15431580/35‑1 (MQ=255)
                     gTTTGCCCACGCACACACCAGCGGTTTTCGTTTcc               <  1:2803771/35‑1 (MQ=255)
                     gTTTGCCCACGCACACACCAGCGGTTTTCGTTTcc               <  1:2920247/35‑1 (MQ=255)
                     gTTTGCCCACGCACACACCAGCGGGTTTTGttttc               >  1:16449042/1‑33 (MQ=25)
                      tttGCCCACGCACACACCAGCGGGGTTTCGttcgc               >  1:1915613/1‑32 (MQ=19)
                      tttGCCCACGCACACACCAGCGGTTTTCGTTTCCa              <  1:10899845/35‑1 (MQ=255)
                      tttGCCCACGCACACACCAGCGGTTTTCGTTTCCa              <  1:6016796/35‑1 (MQ=255)
                      tttGCCCACGCACACACCAGCGGGTTTTGTTTCCa              >  1:6405890/1‑35 (MQ=37)
                       ttGCCCACGCACACACCAGCGGGTTTTGTTTCCat             >  1:15736154/1‑34 (MQ=37)
                       ttGCCCACGCACACACCAGCGGGGTTTGTTTTCAg             >  1:6524996/1‑35 (MQ=12)
                        tGCCCACGCACACACCAGCGGTTTTCGTTTCCAGa            <  1:7258555/35‑1 (MQ=255)
                        tGCCCACGCACACACCAGCGGTTTTCGTTTCCAGa            <  1:17378373/35‑1 (MQ=255)
                         gCCCACGCACACACCAGCGGTTTTCGTCTCCAGAc           <  1:18663192/35‑1 (MQ=255)
                          cccACGCACACACCAGCGGTTTTCGTTTCCAGACa          <  1:10198062/35‑1 (MQ=255)
                          cccACGCACACACCAGCGGTTTTCGTTTCCAGACa          <  1:221700/35‑1 (MQ=255)
                           ccACGCACACACCAGCGGTTTTCGTTTCCAGACAt         <  1:13049421/35‑1 (MQ=255)
                           ccACGCACACACCAGCGGTTTTCGTTTCCAGACAt         <  1:1878841/35‑1 (MQ=255)
                            cACGCACACACCAGCGGTTTTCGTTTCCAGACAtt        <  1:7386248/35‑1 (MQ=255)
                            cACGCACACACCAGCGGTTTTCGTTTCCAGACAtt        <  1:20420195/35‑1 (MQ=255)
                             aCGCACACACCAGCGGTTTTCGTTTCCAGACATTc       <  1:19390073/35‑1 (MQ=255)
                             aCGCACACACCAGCGGGTTTTGTTTTCAGACATTc       >  1:19332112/1‑35 (MQ=25)
                               gCACACACCAGCGGTTTTCGTTTCCAGACATTCCt     <  1:14615301/35‑1 (MQ=255)
                               gCACACACCAGCGGTTTTCGTTTCCAGACATTCCt     <  1:19238947/35‑1 (MQ=255)
                               gCACACACCAGCGGTTTTCGTTTCCAGACATTCCt     <  1:12115634/35‑1 (MQ=255)
                               gCACACACCAGCGGTTTTCGTTTCAAGACATTCCt     <  1:3786676/35‑1 (MQ=255)
                                cacacaCCAGCGGTTTTCGTTTCCAGACATTCCTc    <  1:1392182/35‑1 (MQ=255)
                                cacacaCCAGCGCTTTTCGTTTCCAGACATTCCTc    >  1:19115657/1‑35 (MQ=255)
                                 acacacCAGCGGTTTTCGTTTCCAGACATTCCTCg   <  1:15339348/35‑1 (MQ=255)
                                 acacacCAGCGGTTTTCGTTTCCAGACATTCCTCg   <  1:4103967/35‑1 (MQ=255)
                                  cacacCAGCGGTTTTCGTTTCCAGACATTCCTCgg  <  1:4111565/35‑1 (MQ=255)
                                  cacacCAGCGGTTTTCGTTTCCAGACATTCCTCgg  <  1:11837621/35‑1 (MQ=255)
                                  cacacCAGCGGTTTTCGTTTCCAGACATTCCTCgg  <  1:10472382/35‑1 (MQ=255)
                                  |                                   
TCGCGACTTTGTCATTACGCTGTTTGCCCACGCACACACCAGCGGTTTTCGTTTCCAGACATTCCTCGG  >  REL606/2696342‑2696410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.