New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 580468 = | 60 (0.580) | 16 (0.200) | 4/38 | NT | 16.7% | coding (852/3144 nt) | cusA | copper/silver efflux system, membrane component |
? | REL606 | 2715365 = | 112 (1.380) | coding (1506/2631 nt) | alaS | alanyl‑tRNA synthetase |
Only 100 of 221 total aligned reads displayed.
GGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCAAAA > REL606/580434‑580502 | ggggCATTGCCGAACTAAACGGCGAAGGGGACGTg > 1:6278624/1‑35 (MQ=37) ggggCATTGCCGAACTAAACGGCGAAGGCGAAGTg < 1:14873063/35‑1 (MQ=255) cgtgctggatcaaacgccattctatgcggcatccg < 1:8166824‑M1/1‑1 (MQ=255) cgtgctggatcaaacgccattctatgcggaatccg > 1:12526283‑M1/35‑35 (MQ=255) cgtgctggatcaaacgccattctatgcggaatccg < 1:15108453‑M1/1‑1 (MQ=255) cgtgctggatcaaacgccattctatgcggaatccg > 1:19030484‑M1/35‑35 (MQ=255) caattccgatattttcgacggttttaactatgtTg < 1:10952186‑M1/2‑1 (MQ=255) ntgctggatcaaacgccattctatgcggaatccgg < 1:2180776‑M1/2‑1 (MQ=255) gtgctggatcaaacgccattctatgcggaatccgg > 1:13181253‑M1/34‑35 (MQ=255) gtgctggatcaaacgccattctatgcggaatccgg > 1:13980772‑M1/34‑35 (MQ=255) gtgctggatcaaacgccattctatgcggaatccgg < 1:19316077‑M1/2‑1 (MQ=255) gtgctggatcaaacgccattctatgcggaatccgg > 1:3568754‑M1/34‑35 (MQ=255) gggCATTGCCGAACTAAACGGCGAAGGCGAAGTgg > 1:4700307/1‑35 (MQ=255) gggCATTGCCGAACTAAACGGCGAAGGCGAAGTgg < 1:5648314/35‑1 (MQ=255) gggCATTGCCGAACTAAACGGCGAAGGCGAAGCgg > 1:12212553/1‑35 (MQ=255) aattcctatattttcgacggttttaactatgtTgg < 1:19949128‑M1/3‑1 (MQ=255) aattccgatattttcgacggttttaactatgtTgg < 1:13104962‑M1/3‑1 (MQ=255) aattccgatattttcgacggttttaactatgtTgg > 1:10044970‑M1/33‑35 (MQ=255) tgctggatcaaacgccattctatgcggaatccggc < 1:11887410‑M1/3‑1 (MQ=255) tgctggatcaaacgccattctatgcggaatccggc > 1:18736123‑M1/33‑35 (MQ=255) tgctggatcaaacgccattctatgcggaatccggc < 1:16651637‑M1/3‑1 (MQ=255) tgctggatcaaacgccattctatgcggaatccggc > 1:4879748‑M1/33‑35 (MQ=255) tgctggatcaaacgccattctatgcggaatccggc < 1:978399‑M1/3‑1 (MQ=255) tgctggatcaaacgccattctatgcggaatccggc > 1:8455224‑M1/33‑35 (MQ=255) attccgatattttcgacggttttaactatgtTggc < 1:2083010‑M1/4‑1 (MQ=255) attccgatattttcgacggttttaactatgtTggc < 1:11588542‑M1/4‑1 (MQ=255) ttccgatattttcgacggttttaactatgttgggg < 1:1763156‑M1/5‑3 (MQ=255) ttccgatattttcgacggttttaactatgttgggg < 1:16420977‑M1/5‑3 (MQ=255) ttccgatattttcgacggttttaactatgtTggcg > 1:1807149‑M1/31‑35 (MQ=255) ttccgatattttcgacggttttaactatgtTggcg < 1:19232256‑M1/5‑1 (MQ=255) ttccgatattttcgacgggtttaactatgtTggcg < 1:7302064‑M1/5‑1 (MQ=255) gctggatcaaacgccattctatgcggaatccggcg > 1:15984446‑M1/32‑35 (MQ=255) gctggatcaaacgccattctatgcggaatccggcg < 1:4587456‑M1/4‑1 (MQ=255) gctggatcaaacgccattctatgcggaatccggcg < 1:17020305‑M1/4‑1 (MQ=255) gctggatcaaacgccattctatgcggaatccggcg > 1:19577620‑M1/32‑35 (MQ=255) gctggatcaaacgccattctatgcggaatccggcg < 1:384322‑M1/4‑1 (MQ=255) gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg < 1:1042783/35‑1 (MQ=255) gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg > 1:4169277/1‑35 (MQ=255) gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg < 1:14363059/35‑1 (MQ=255) tccgatattttcgacggttttaactatgtTggcgg < 1:8319998‑M1/6‑1 (MQ=255) ctggatcaaacgccattctatgcggaatcctgcgg < 1:17316052‑M1/5‑1 (MQ=255) ctggatcaaacgccattctatgcggaatccggcgg > 1:9267522‑M1/31‑35 (MQ=255) cATTGCCGAACTAAACGGCGAAGGCGAAGTggcgg > 1:11062038/1‑35 (MQ=255) cATTGCCGAACTAAACGGCGAAGGCGAAGTggcgg < 1:12297684/35‑1 (MQ=255) cATTGCCGAACTAAACGGCGAAGGAGAAGTggcgg < 1:10707697/35‑1 (MQ=255) tggatcaaacgccattctatgcggaatccggctgg < 1:18629294‑M1/6‑4 (MQ=255) tggatcaaacgccattctatgcggaatccggcggg < 1:15349871‑M1/6‑1 (MQ=255) ccgatattttcgacggttttaactatgtTggcggg < 1:19379034‑M1/7‑1 (MQ=255) ccgatattttcgacggttttaactatgtTggcggg < 1:5060415‑M1/7‑1 (MQ=255) aTTGCCGAACTAAACGGCGAAGGCGAAGTggcggg > 1:12380438/1‑35 (MQ=255) ttGCCGAACTAAACGGCGAAGGCGAAGTggcgggc < 1:20432073/35‑1 (MQ=255) ttGCCGAACTAAACGGCGAAGGCGAAGTggcgggc < 1:15232428/35‑1 (MQ=255) ttGCCGAACTAAACGGCGAAGGCGAAGCggcgggg > 1:10164171/1‑34 (MQ=255) tgatcaaacgccattctatgcggaatccggcgggg < 1:18409497‑M1/7‑2 (MQ=255) cgatattttcgacggttttaactatgttggcggga < 1:9571015‑M1/8‑2 (MQ=255) gatcaaacgccattctatgcggaatccggcggggg < 1:4647489‑M1/8‑3 (MQ=255) gatcaaacgccattctatgcggaatccggcgggga < 1:20042682‑M1/8‑3 (MQ=255) gatcaaacgccattctatgcggaatccggcgggcg < 1:6416229‑M1/8‑1 (MQ=255) gCCGAACTAAACGGCGAAGGCGAAGTGgcgggcgg < 1:13407157/35‑1 (MQ=255) atcaaacgccattctatgcggaatccggcgggggg < 1:17487616‑M1/9‑4 (MQ=255) atattttcgacggttttaactatgttggcgggcgc < 1:5403952‑M1/10‑2 (MQ=255) tcaaacgccattctatgcggaatccGGcggggggg < 1:3898857‑M1/10‑1 (MQ=255) tcaaacgccattctatgcggaatccGGcgggcggg < 1:113830‑M1/10‑1 (MQ=255) ccGAACTAAACGGCGAAGGCGAAGTGGcgggcggg < 1:6052050/35‑1 (MQ=255) ccGAACTAAACGGAGAAGGCGAAGTGGcgggcggg < 1:12723045/35‑1 (MQ=255) caaacgccattctatgcggaatccGGCGGGGgggg < 1:5227141‑M1/11‑1 (MQ=255) caaacgccattctatgcggaatccGGCGGGCgggg < 1:15519318‑M1/11‑1 (MQ=255) caaacgccattctatgcggaatccGGCGGGCaggg < 1:5933957‑M1/11‑1 (MQ=255) cGAACTAAACGGCGAAGGCGAAGTGGCGGGGgggg > 1:17416978/1‑35 (MQ=255) ttttcgacggttttaactatgtTGGCGGGCGGggt < 1:3422707‑M1/13‑1 (MQ=255) gAACTAAACGGCGAAGGCGAAGTGGCGGGGggggg > 1:17387107/1‑34 (MQ=255) gAACTAAACGGCGAAGGCGAAGTGGCGGGGggggg > 1:7716256/1‑34 (MQ=255) gAACTAAACGGCGAAGGCGAAGTGGCGGGGggggg > 1:17964919/1‑34 (MQ=255) gAACGAGACGGCGAAGGCGAAGTGGCGGGCGGggt < 1:1803762/35‑1 (MQ=37) acgccattctatgcggaatccGGCGGGCGGggtgg < 1:9347955‑M1/14‑1 (MQ=255) acgccattctatgcggaatccGGCGGGCGGggtgg < 1:312772‑M1/14‑1 (MQ=255) acgccattctatgcggaatccGGCGGGCGGggtgg < 1:5311048‑M1/14‑1 (MQ=255) acgccattctatgcggaatccGGCGGGCCGggtgg < 1:19216221‑M1/14‑1 (MQ=255) cgccattctatgcggaatccGGCGGGCAgggtggc < 1:13744069‑M1/15‑2 (MQ=255) cTAAACGGCGAAGGTGAAGTGGCGGGCGGggtggt < 1:5960865/35‑1 (MQ=255) tAAACGGCGAAGGCGAAGTGGCGGGCGGggtggtc < 1:11942700/35‑2 (MQ=255) tAAACGGCGAAGGCGAAGTGGCGGGCGGGgtggtg < 1:15287797/35‑1 (MQ=255) tAAACGGCGAAGGCGAAGTGGCGGGCGGGgtggtg < 1:1882278/35‑1 (MQ=255) aaaCGGCGAAGGCGAAGTGGCGGGGGGgggggggg > 1:8155634/1‑32 (MQ=25) aaaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGa < 1:4465531/35‑1 (MQ=255) aaaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGa < 1:6766226/35‑1 (MQ=255) tgcgaaggcgaagTGGCGGGCGGGGTGGTGATCCt < 1:3334441/34‑1 (MQ=255) ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt < 1:16872517/35‑1 (MQ=255) ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt < 1:4221488/35‑1 (MQ=255) ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt < 1:328195/35‑1 (MQ=255) gcgaaggcgaagTGGCGGGCGGGGTGGTGATCCTg < 1:12868442/35‑1 (MQ=255) ggcgaagTGGCGGGCGGGGTGGTGATCCTGCGATc < 1:1785312/35‑1 (MQ=255) gcgaagTGGCGGGCGGGGTGGTGATCCTGCGATcc < 1:10607013/35‑1 (MQ=255) cgaagTGGCGGGCGGGGTGGTGATCCTGCGATCCg < 1:14031774/35‑1 (MQ=255) gaagTGGCGGGCGGGGTGGTGATCCTGCGATCCgg < 1:6959695/35‑1 (MQ=255) gaagTGGCGGGCGGGGTGGTGATCCTGCGATCCgg < 1:17173489/35‑1 (MQ=255) aagTGGCGGGCGGGGTGGTGATCCTGCGATCCGGc < 1:2517084/35‑1 (MQ=255) agTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCa < 1:8580248/35‑1 (MQ=255) agTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCa < 1:18252069/35‑1 (MQ=255) ggcgggcgGGGGGGGGCTCCTGCGGACCGGCcaaa > 1:660855/1‑35 (MQ=9) | GGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCAAAA > REL606/580434‑580502 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |