New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 146226959 (0.570)9 (0.100) 8/42 NT 14.8% intergenic (‑31/‑310) mokB/trg regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor
?REL606 = 3894996 NA (NA)noncoding (1443/1443 nt) IS150 repeat region

GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1462233‑1462269
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcTGTACTGACCCCAAAAAGTTGGACAGTTAA  <  REL606/3894996‑3894967
                                                                   
GTTCATTCGTTGGCCTCGGTTGATAGAAATATTGG                                  >  1:18256611/1‑35
GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGG                                  >  1:9143104/1‑35
GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGG                                  <  1:3514879/35‑1
GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGG                                  >  1:2613487/1‑35
GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGG                                  >  1:19611984/1‑35
GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGG                                  <  1:12539196/35‑1
 TTCATTCGTTGGCCTCGGTTGATAGAAATATCGGT                                 <  1:15533934/35‑1
 TTCATTCGTTGGCCTCGGTTGATAGAAATATCGGT                                 <  1:13506582/35‑1
 TTCATTCGTTGGCCTCGGTTGATAGAAATATCGGT                                 >  1:10897712/1‑35
 TTCATTCGTTGGCCTCGGTTGATAGAAATATCGGT                                 >  1:10294614/1‑35
 TTCATTCGTTGGCCTCGGTTGATAGAAAGATCGGT                                 <  1:6125798/35‑1
 TTCATTCGTTGGCATCGGTTGATAGAAATATCGGT                                 <  1:11011809/35‑1
  TCATTCGTTGGCCTCGGTTGATAGAAATATCGGTC                                <  1:3162945/35‑1
  TCATTCGTTGGCCTCGGTTGATAGAAATATCGGTC                                <  1:4180938/35‑1
   CATTCGTTGGCCTCGGTTGATAGAAATATCGGgcg                               >  1:9924605/1‑32
   CATTCGTTGGCCTCGGTTGATAGAAATATCGGTCT                               <  1:20361136/35‑1
    ATTCGTTGGCCTCGGTTGATAGAAATATCGGTCTG                              >  1:10525253/1‑35
     TTCGTTGGCCTCGGTTGATAGAAATATCGGTCTGT                             >  1:18084192/1‑35
       CGTTGGCCTCGGTTGATAGAAATATCGGTCTGTAC                           <  1:6579525/35‑1
           GGCCTCGGTTGATAGAAATATCGGTCTGTACTGAC                       <  1:10982498/35‑1
            GCCTCGGTTGATAGAAATATCGGTCTGTACTGACC                      >  1:8002557/1‑35
             CCTCGGTTGATAGAAATATCGGTCTGTACTGACCC                     >  1:996720/1‑35
             CCTCGGTTGATAGAAATATCGGTCTGTACTGACCC                     >  1:336443/1‑35
              CTCGGTTGATAGAAATATCGGTCTGTACTGACCCC                    <  1:19993431/35‑1
                CGGTTGATAGAAATATCGGTCTGTACTGACCCCAA                  >  1:19164457/1‑35
                    TGATAGAAATATCGGTCTGTACTGACCCCAAAAAG              <  1:10601260/35‑1
                    TGATAGAAATATCGGTCTGTACTGACCCCAAAAAG              >  1:10662110/1‑35
                          AAATATCGGTCTGTACTGACCCCAAAAAGTTGGAC        >  1:1041574/1‑35
                             TATCGGTCTGTACTGACCCCAAAAAGTTGGACAGT     >  1:3924763/1‑35
                             TATCGGTCTGTACTGACCCCAAAAAGTTGGACAGT     >  1:11353601/1‑35
                              cTCGGTTTGTACTGACCCCAAAAAGTTGGACAGTT    <  1:8112808/34‑1
                                CGGCCTGTACTGACCCCAAAAAGTTGGACAGTTAA  <  1:18484193/35‑1
                                                                   
GTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1462233‑1462269
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcTGTACTGACCCCAAAAAGTTGGACAGTTAA  <  REL606/3894996‑3894967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.