New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1493185 | 140 (1.360) | 10 (0.120) | 4/38 | NT | 10.9% | intergenic (‑10/‑232) | yncD/yncE | predicted iron outer membrane transporter/hypothetical protein |
? | REL606 | 3269358 = | 53 (0.650) | coding (415/972 nt) | ispB | octaprenyl diphosphate synthase |
Only 100 of 244 total aligned reads displayed.
TCTGTCGGACGGAAAAAATCTTCATGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCGTTATGGTAATG > REL606/1493151‑1493219 | tCTGTCGGACGGAAAAAATCTTCATGAAAAAAGCC < 1:12949359‑M1/35‑1 (MQ=255) tCTGTCGGACGGAAAAAATCTTCATGAAAAAAGCC < 1:12390848‑M1/35‑1 (MQ=255) cTGTCGGACGGAAAAAATCTTCATGAAAAAAGCCa < 1:10438207/35‑1 (MQ=255) cTGTCGGACGGAAAAAATCTTCATGAAAAAAGCCa > 1:9004635/1‑35 (MQ=255) tGTCGGACGGAAAAAATCTTCATGAAAAAAGCCAg < 1:5973265/35‑1 (MQ=255) tGTCGGACGGAAAAAATCTTCATGAAAAAAGCCAg < 1:9360474/35‑1 (MQ=255) gTCGGGCGGAAAAAATCTTCATGAAAAAAGCCAgg < 1:19990301/35‑1 (MQ=255) gTCGGACGGAAAAAATCTTCATGAAAAAAGCCAgg > 1:5329005/1‑35 (MQ=255) gTCGGACGGAAAAAATCTTCATGAAAAAAGCCAgg < 1:6018268/35‑1 (MQ=255) gTCGGACGGAAAAAATCTTCATGAAAAAAGCCAgg > 1:11665446/1‑35 (MQ=255) tCGGACGGAAAAAATCTTCATGAAAAAAGCCAGGt < 1:5641086/35‑1 (MQ=255) tCGGACGGAAAAAATCTTCATGAAAAAAGCCAGGt < 1:8434213/35‑1 (MQ=255) tCGGACGGAAAAAATCTTCATGAAAAAAGCCAGGt > 1:17995063/1‑35 (MQ=255) ggacggaAAAAATCTTCATGAAAAAAGCCAGGTTa > 1:5651070/1‑35 (MQ=255) ggacggaAAAAATCTTCATGAAAAAAGCCAGGTTa > 1:14019922/1‑35 (MQ=255) ggacggaAAAAATCTTCATGAAAAAAGCCAGGTTa > 1:17825693/1‑35 (MQ=255) ggacggaAAAAATCTTCATGAAAAAAGCCAGGTTa > 1:11196783/1‑35 (MQ=255) gacggaAAAAATCTTCATGAAAAAAGCCAGGTTaa > 1:13050184/1‑35 (MQ=255) gacggaAAAAATCTTCATGAAAAAAGCCAGGTTaa < 1:3774882/35‑1 (MQ=255) gacggaAAAAATCTTCATGAAAAAAGCCAGGTTaa > 1:19401744/1‑35 (MQ=255) gacggaAAAAATCTTCATGAAAAAAGCCAGGTTaa > 1:15406717/1‑35 (MQ=255) acggaAAAAATCTTCATGAAAAAAGCCAGGTTAAg > 1:8567053/1‑35 (MQ=255) cggaAAAAATCTTCATGAAAAAAGCCAGGTTAAGa < 1:7010802/35‑1 (MQ=255) cggaAAAAATCTTCATGAAAAAAGCCAGGTTAAGa > 1:4598980/1‑35 (MQ=255) cggaAAAAATCTTCATGAAAAAAGCCAGGTTAAGa < 1:3286987/35‑1 (MQ=255) ggaAAAAATCTTCATGAAAAAAGCCAGGTTAAGaa < 1:3332047/35‑1 (MQ=255) ggaAAAAATCTTCATGAAAAAAGCCAGGTTAAGaa > 1:19848597/1‑35 (MQ=255) ggaAAAAATCTTCATGAAAAAAGCCAGGTTAAGaa < 1:17542349/35‑1 (MQ=255) gaAAAAATCTTCATGAAAAAAGCCAGGTTAAGAAt > 1:10596092/1‑35 (MQ=255) aaaaaaTCTTCATGAAAAAAGCCAGGTTAAGAATg > 1:15984886/1‑35 (MQ=255) aaaaaaTCTTCATGAAAAAAGCCAGGTTAAGAATg < 1:2251372/35‑1 (MQ=255) aaaaaaTCTTCATGAAAAAAGCCAGGTTAAGAATg < 1:14513356/35‑1 (MQ=255) aaaaaaTCTTCATGAAAAAAGCCAGGTTAAGAATg < 1:6799638/35‑1 (MQ=255) aaaaaTCTTCATGAAAAAAGCCAGGTTAAGAATgg > 1:18664078/1‑35 (MQ=255) aaaaTCTTCATGAAAAAAGCCAGGTTAAGAATggg > 1:14855518/1‑35 (MQ=255) aaaaTCTTCATGAAAAAAGCCAGGTTAAGAATggg < 1:20489979/35‑1 (MQ=255) aaaaTCTTCATGAAAAAAGCCAGGTTAAGAATggg > 1:14188599/1‑35 (MQ=255) aaaaTCTTCATGAAAAAAGCCAGGTTAAGAATggg > 1:12483656/1‑35 (MQ=255) aaaaTCTTCATGAAAAAAGCCAGGTTAAGAATggg < 1:10804570/35‑1 (MQ=255) aaaTCTTCATGAAAAAAGCCAGGTTAAGAATGGGa > 1:19155771/1‑35 (MQ=255) aaTCTTCATGAAAAAAGCCAGGTTAAGAATGGGaa > 1:16804971/1‑35 (MQ=255) aaTCTTCATGAAAAAAGCCAGGTTAAGAATGGGaa > 1:7188094/1‑35 (MQ=255) aaTCTTCATGAAAAAAGCCAGGTTAAGAATGGGaa < 1:11322700/35‑1 (MQ=255) aaTCTTCATGAAAAAAGCCAGGTTAAGAATGGGaa > 1:9533687/1‑35 (MQ=255) tCTTCATGAAAAAAGCCAGGTTAAGAATGGGaaaa < 1:5518382/35‑1 (MQ=255) cTTCATGAAAAAAGCCAGGTTAAGAATGGGAAAAc > 1:9653843/1‑35 (MQ=255) cTTCATGAAAAAAGCCAGGTTAAGAATGGGAAAAc < 1:11484823/35‑1 (MQ=255) ttCATGAAAAAAGCCAGGTTAAGAATGGGAAAACg < 1:9064100/35‑1 (MQ=255) gtcATAAAAAAAGCCgtaaacgtcatcgcagaagg < 1:19017752‑M1/34‑21 (MQ=255) gtcAGGAAAAAAGCCgtaaacgtcatcgcagaagg < 1:2460917‑M1/34‑21 (MQ=255) tCAGGAAAAAAGCCgtaaacgtcatcgcagaaggt < 1:5382880‑M1/35‑22 (MQ=255) cATGAAAAAAGCCAGGTTAAGAATGGGAAAACGcc > 1:15174729/1‑35 (MQ=255) cATGAAAAAAGCCAGGTTAAGAATGGGAAAACGcc < 1:1357635/35‑1 (MQ=255) cATGAAAAAAGCCAGGTTAAGAATGGGAAAACGcc < 1:14992299/35‑1 (MQ=255) cATGAAAAAAGCCAGGTTAAGAATGGGAAAACGcc > 1:11241037/1‑35 (MQ=255) aTGTAAAAAGCCgtaaacgtcatcgcagaaggtga < 1:16674347‑M1/35‑24 (MQ=255) aTGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCg > 1:19432498/1‑35 (MQ=255) aTGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCg < 1:19639581/35‑1 (MQ=255) aTGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCg < 1:15592391/35‑1 (MQ=255) aTGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCg < 1:13628097/35‑1 (MQ=255) taaaaaaagcCgtaaacgtcatcgcagaaggtgaa < 1:15614270‑M1/33‑25 (MQ=255) tGAAAAAAGCCgtaaacgtcatcgcagaaggtgaa < 1:18106712‑M1/35‑25 (MQ=255) tGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCGt < 1:8788943/35‑1 (MQ=255) tGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCGt > 1:20085585/1‑35 (MQ=255) gtaaaaagcCgtaaacgtcatcgcagaaggtgaag < 1:3627903‑M1/33‑26 (MQ=255) gAAAAAAGCTAGGTTAAGAATGGGAAAACGCCGtt > 1:12874731/1‑35 (MQ=255) gAAAAAAGCCgtaaacgtcatcgcagaaggtgaag < 1:17310271‑M1/35‑26 (MQ=255) aaaaaaagCCgtaaacgtcatcgcagaaggtgaag < 1:19271404‑M1/34‑26 (MQ=255) taaaaagCCgtaaacgtcatcgcagaaggtgaagt < 1:7725638‑M1/34‑27 (MQ=255) aaaaaaGCCAGGTTAAGAATGGGAAAACGCCGTTa > 1:4394693/1‑35 (MQ=255) aaaaaaGCCAGGTTAAGAATGGGAAAACGCCGTTa > 1:7921061/1‑35 (MQ=255) aaaaaGCCgtaaacgtcatcgcagaaggtgaagtt < 1:3684132‑M1/35‑28 (MQ=255) aaaaaGCCAGGTTAAGAATGGGAAAACGCCGTTAt > 1:1677841/1‑35 (MQ=255) aaaaGCCgtaaacgtcatcgcagaaggtgaagttc < 1:10896016‑M1/35‑29 (MQ=255) aaaaGCCgtaaacgtcatcgcagaaggtgaagttc < 1:18680726‑M1/35‑29 (MQ=255) aaaaGCCAGGTTAAGAATGGGAAAACGCCGTTATg > 1:20007300/1‑35 (MQ=255) aaaGCCAGGTTAAGAATGGGAAAACGCCGTTATgg < 1:814457/35‑1 (MQ=255) aaaGCCAGGTTAAGAATGGGAAAACGCCGTTATgg > 1:2188921/1‑35 (MQ=255) aaaGCCAGGTTAAGAATGGGAAAACGCCGTTATgg > 1:17670800/1‑35 (MQ=255) aaGCCgtaaacgtcatcgcagaatgtgaagttctg > 1:13176631‑M1/1‑5 (MQ=255) aaGCCAGGTTAAGAATGGGAAAACGCCGTTATGGt < 1:12007549/35‑1 (MQ=255) aaGCCAGGTTAAGAATGGGAAAACGCCGTTATGGt > 1:4152371/1‑35 (MQ=255) aaGCCAGGTTAAGAATGGGAAAACGCCGTTATGGt > 1:2358010/1‑35 (MQ=255) aaGCCAGGTTAAGAATGGGAAAACGCCGTTATGGt < 1:17175026/35‑1 (MQ=255) aGCCgtaaacgtcatcgcagaaggtgaagttctgc < 1:12247447‑M1/35‑32 (MQ=255) aGCCgtaaacgtcatcgcagaaggtgaagttctgc > 1:4036524‑M1/1‑4 (MQ=255) aGCCAGGTTAAGAATGGGAAAACGCCGTTATGGTa > 1:10284999/1‑35 (MQ=255) aGCCAGGTTAAGAATGGGAAAACGCCGTTATGGTa < 1:6863595/35‑1 (MQ=255) aGCCAGGTTAAGAATGGGAAAACGCCGTTATGGTa > 1:16276352/1‑35 (MQ=255) gCCgtaaacgtcatcgcagaaggtgaagttctgca > 1:15519470‑M1/1‑3 (MQ=255) gCCgtaaacgtcatagcagaaggtgaagttctgca < 1:20288843‑M1/35‑33 (MQ=255) gCCAGGTTAAGAATGGGAAAACGCCGTTATGGTaa < 1:6167384/35‑1 (MQ=255) ccgtaaacgtcatcgcagaaggtgaagttctgcaa < 1:6276713‑M1/35‑34 (MQ=255) ccgtaaacgtcatcgcagaaggtgaagttctgcaa > 1:1905636‑M1/1‑2 (MQ=255) ccgtaaacgtcatcgcagaaggtgaagttctgcaa > 1:18248977‑M1/1‑2 (MQ=255) ccAGGTTAAGAATGGGAAAACGCCGTTATGGTAAt < 1:5843428/35‑1 (MQ=255) ccAGGTTAAGAATGGGAAAACGCCGTTATGGTAAt < 1:19307188/35‑1 (MQ=255) cgtaaacgtcatcgcagaaggtgaagttctgcaac > 1:13281076‑M1/1‑1 (MQ=255) cAGGTTAAGAATGGGGAAACGCAGTTATGGTAATg < 1:1460688/35‑1 (MQ=37) cAGGTTAAGAATGGGAAAACGCCGTTATGGTAATg < 1:15833638/35‑1 (MQ=255) | TCTGTCGGACGGAAAAAATCTTCATGAAAAAAGCCAGGTTAAGAATGGGAAAACGCCGTTATGGTAATG > REL606/1493151‑1493219 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |