New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 564054 = | 42 (0.410) | 9 (0.120) | 3/34 | NT | 14.5% | coding (2252/2973 nt) | nfrA | bacteriophage N4 receptor, outer membrane subunit |
? | REL606 | 1414711 = | 76 (1.040) | coding (223/276 nt) | racC | predicted protein |
Only 100 of 125 total aligned reads displayed.
ATTATTGTTAGCGGTGCTCATTGCCCCGGAACGCAAGCCGATAGAAGAATCGAAACTGAACGTCCAGCG > REL606/564020‑564088 | gtgcatatcggaaagaatctgcccgcagaaaaaaa < 1:1552041‑M1/1‑1 (MQ=255) gtgcatatcggaaagaatctgcccgcagaaaaaaa > 1:6162695‑M1/35‑35 (MQ=255) gtgcatatcggaaagaatctgcccgcagaaaaaaa > 1:8751531‑M1/35‑35 (MQ=255) attattGTTAGCGGTGCTCATTGCCCCGGAACGCa > 1:19684089/1‑35 (MQ=255) attattGTTAGCGGTGCTCATTGCCCCGGAACGCa < 1:3081768/35‑1 (MQ=255) attattGTTAGCGGTGCTCATTGCCCCGGAACGCa > 1:17600755/1‑35 (MQ=255) attattGTTAGCGGTGCTCATTGCCCCGGAACGCa < 1:12859805/35‑1 (MQ=255) attattGTTAGCGGTGCTCATTGCCCCGGAACGCa > 1:786673/1‑35 (MQ=255) attattGTTAGCGGTGCTCATTGCCCCGGAACGCa < 1:7970353/35‑1 (MQ=255) attattGTTAGCGGTGCTCATTGCCCCGGAACGCa > 1:9787062/1‑35 (MQ=255) attattGTTAGCGGTGCTCATTGCCCCGGAACGCa < 1:9321146/35‑1 (MQ=255) ttgttGTTAGCGGTGCTCATTGCCCAGGAACGCaa < 1:7769513/32‑1 (MQ=37) ttattGTTAGCGGTGCTCATTGCCCCGGAACGCaa < 1:13621628/35‑1 (MQ=255) ttattGTTAGCGGTGCTCATTGCCCCGGAACGCaa < 1:8702735/35‑1 (MQ=255) tgcatatcggaaagaatctgcccgcagaaaaaaaa > 1:2553187‑M1/34‑35 (MQ=255) tgcatatcggaaagaatctgcccgcagaaaaaaaa < 1:1483133‑M1/2‑1 (MQ=255) tgcatatcggaaagaatctgcccgcagaaaaaaaa < 1:13407954‑M1/2‑1 (MQ=255) tattGTTAGCGGTGCTCATTGCCCCGGAACGCAAg < 1:12548077/35‑1 (MQ=255) tattGTTAGCGGTGCTCATTGCCCCGGAACGCAAg < 1:6218427/35‑1 (MQ=255) tattGTTAGCGGTGCTCATTGCCCCGGAACGCAAg < 1:6682457/35‑1 (MQ=255) gcatatcggaaagaatctgcccgcagaaaaaaAAg < 1:17174908‑M1/3‑1 (MQ=255) catatcggaaagaatctgcccgcagaaaaaaAAGc > 1:9563760‑M1/32‑35 (MQ=255) catatcggaaagaatctgcccgcagaaaaaaAAGc < 1:14587746‑M1/4‑1 (MQ=255) catatcggaaagaatctgcccgcagaaaaaaAAGc < 1:14622907‑M1/4‑1 (MQ=255) catatcggaaagaatctgcccgcagaaaaaaAAGc < 1:1921095‑M1/4‑1 (MQ=255) attGTTAGCGGTGCTCATTGCCCCGGAACGCAAGc > 1:17315806/1‑35 (MQ=255) attGTTAGCGGTGCTCATTGCCCCGGAACGCAAGc < 1:11148061/35‑1 (MQ=255) atatcggaaagaatctgcccgcagaaaaaaAAGcc < 1:14981562‑M1/5‑1 (MQ=255) atatcggaaagaatctgcccgcagaaaaaaAAGcc < 1:15067213‑M1/5‑1 (MQ=255) atatcggaaagaatctgcccgcagaaaaaaAAGcc > 1:12231957‑M1/31‑35 (MQ=255) atatcggaaagaatctgcccgcagaaaaaaAAGcc < 1:3321828‑M1/5‑1 (MQ=255) atatcggaaagaatctgcccgcagaaaaaaAAGcc > 1:15500899‑M1/31‑35 (MQ=255) atatcggaaagaatctgcccgcagaaaaaaAAGcc < 1:5938333‑M1/5‑1 (MQ=255) tatcggaaagaatctgcccgcagaaaaaaAAGCCg < 1:19219089‑M1/6‑1 (MQ=255) tatcggaaagaatctgcccgcagaaaaaaAAGCCg < 1:18467498‑M1/6‑1 (MQ=255) tGTTAGCGGTGCTCATTGCCCCGGAACGCAAGCCg > 1:15227225/1‑35 (MQ=255) gtaaGCGGTGCTCATTGCCCCGGAACGCAAGCCGa > 1:18837675/4‑35 (MQ=255) gTTAGCGGTGCTCATTGCCCCGGAACGCAAGCCGa > 1:9592006/1‑35 (MQ=255) atcggaaagaatctgcccgcagaaaaaaAAGCCGa < 1:17330639‑M1/7‑1 (MQ=255) atcggaaagaatctgcccgcagaaaaaaAAGCCGa < 1:7347305‑M1/7‑1 (MQ=255) atcggaaagaatctgcccgcagaaaaaaAAGCCGa < 1:11884066‑M1/7‑1 (MQ=255) ttAGCGGTGCTCATTGCCCCGGAACGCAAGCCGAt > 1:8667833/1‑35 (MQ=255) ggTGCTCATTGCCCCGGAACGCAAGCCGATagaag > 1:5212229/1‑35 (MQ=255) ggTGCTCATTGCCCCGGAACGCAAGCCGATagaag > 1:12759948/1‑35 (MQ=255) gCTCATTGCCCCGGAACGCAAGCCGATAGAAGAAt > 1:5827037/1‑35 (MQ=255) gCTCATTGCCCCGGAACGCAAGCCGATAGAAGAAt > 1:3207205/1‑35 (MQ=255) cTCATTGCCCCGGAACGCAAGCCGATAGAAGAATc > 1:7278964/1‑35 (MQ=255) tCATTGCCCCGGAACGCAAGCCGATAGAAGAATCg > 1:20138133/1‑35 (MQ=255) cATTGCCCCGGAACGCAAGCCGATAGAAGAATCGa > 1:15308256/1‑35 (MQ=255) cATTGCCCCGGAACGCAAGCCGATAGAAGAATCGa > 1:12817515/1‑35 (MQ=255) cATTGCCCCGGAACGCAAGCCGATAGAAGAATCGa > 1:8043910/1‑35 (MQ=255) aTTGCCCCGGAACGCAAGCCGATAGAAGAATCGaa > 1:4166987/1‑35 (MQ=255) ttGCCCCGGAACGCAAGCCGATAGAAGAATCGaaa > 1:4013620/1‑35 (MQ=255) ttGCCCCGGAACGCAAGCCGATAGAAGAATCGaaa > 1:10093461/1‑35 (MQ=255) ttGCCCCGGAACGCAAGCCGATAGAAGAATCGaaa > 1:12181032/1‑35 (MQ=255) gCCCCGGAACGCAAGCCGATAGAAGAATCGAAACt > 1:10202886/1‑35 (MQ=255) gCCCCGGAACGCAAGCCGATAGAAGAATCGAAACt > 1:720944/1‑35 (MQ=255) gCCCCGGAACGCAAGCCGATAGAAGAATCGAAACt > 1:387615/1‑35 (MQ=255) gCCCCGGAACGCAAGCCGATAGAAGAATCGAAACt > 1:3859582/1‑35 (MQ=255) gCCCCGGAACGCAAGCCGATAGAAGAATCGAAACt > 1:11224734/1‑35 (MQ=255) cccccGGAAAAAAAGCCGATAGAAGAATCGAAACt < 1:192636/34‑1 (MQ=25) ccccGGAACGCAAGCCGATAGAAGAATCGAAACTg > 1:13034537/1‑35 (MQ=255) ccccGGAACGCAAGCCGATAGAAGAATCGAAACTg > 1:9499426/1‑35 (MQ=255) ccccGAAACAAAAGCCGATAGAAGAATCGAAACTg < 1:18096484/35‑1 (MQ=25) cccGGAACGCAAGCCGATAGAAGAATCGAAACTGa > 1:9451351/1‑35 (MQ=255) cccGGAACGCAAGCCGATAGAAGAATCGAAACTGa > 1:16342088/1‑35 (MQ=255) cccGGAACGCAAGCCGATAGAAGAATCGAAACTGa > 1:633683/1‑35 (MQ=255) cccGGAACGCAAGCCGATAGAAGAATCGAAACTGa > 1:15504756/1‑35 (MQ=255) ccaaaaaaaaAAGCCGATAGAAGAATCGAAACTGa > 1:2650312‑M1/11‑35 (MQ=255) ccGGAACGCAAGCCGATAGAAGAATCGAAACTGaa > 1:11901089/1‑35 (MQ=255) ccGGAACGCAAGCCGATAGAAGAATCGAAACTGaa > 1:7654200/1‑35 (MQ=255) ccGGAACGCAAGCCGATAGAAGAATCGAAACTGaa > 1:11177365/1‑35 (MQ=255) ccGGAACGCAAGCCGATAGAAGAATCGAAACTGaa > 1:3721380/1‑35 (MQ=255) ccGGAACGCAAGCCGATAGAAGAATCGAAACTGaa > 1:18550951/1‑35 (MQ=255) cGGAACGCAAGCCGATAGAAGAATCGAAACTGAAc > 1:4189261/1‑35 (MQ=255) cGGAACGCAAGCCGATAGAAGAATCGAAACTGAAc > 1:6961121/1‑35 (MQ=255) cGGAACGCAAGCCGATAGAAGAATCGAAACTGAAc > 1:11376784/1‑35 (MQ=255) cGGAACGCAAGCCGATAGAAGAATCGAAACTGAAc > 1:8382990/1‑35 (MQ=255) ggAACGCAAGCCGATAGAAGAATCGAAACTGAACg > 1:5534117/1‑35 (MQ=255) gaaacaaAAGCCGATAGAAGAATCGAAACTGAACg > 1:6177852‑M1/8‑35 (MQ=255) gaaacaaAAGCCGATAGAAGAATCGAAACTGAACg > 1:11993559‑M1/8‑35 (MQ=255) gaacaaAAGCCGATAGAAGAATCGAAACTGAACGt > 1:10466231‑M1/7‑35 (MQ=255) aaacaaAAGCCGATAGAAGAATCGAAACTGAACGt > 1:11615009‑M1/7‑35 (MQ=255) aaaaaaAAGCCGATAGAAGAATCGAAACTGAACGt > 1:6719512‑M1/7‑35 (MQ=255) aaaaaAAGCCGATAGAAGAATCGAAACTGAACGTc > 1:6734249‑M1/6‑35 (MQ=255) aaaaAAGCCGATAGAAGAATCGAAACTGAACGTcc > 1:15757594‑M1/5‑35 (MQ=255) aCGCAAGCCGATAGAAGAATCGAAACTGAACGTcc > 1:4116149/1‑35 (MQ=255) cGCAAGCCGATAGAAGAATCGAAACTGAACGTCCa > 1:16867487/1‑35 (MQ=255) cGCAAGCCGATAGAAGAATCGAAACTGAACGTCCa > 1:10769150/1‑35 (MQ=255) cGCAAGCCGATAGAAGAATCGAAACTGAACGTCCa > 1:16559999/1‑35 (MQ=255) gCAAGCCGATAGAAGAATCGAAACTGAACGTCCAg > 1:9595020/1‑35 (MQ=255) gCAAGCCGATAGAAGAATCGAAACTGAACGTCCAg > 1:20168190/1‑35 (MQ=255) aaAAGCCGATAGAAGAATCGAAACTGAACGTCCAg > 1:924259‑M1/3‑35 (MQ=255) aaAAGCCGATAGAAGAATCGAAACTGAACGTCCAg > 1:13329512‑M1/3‑35 (MQ=255) aaAAGCCGATAGAAGAATCGAAACTGAACGTCCAg > 1:14790910‑M1/3‑35 (MQ=255) aaAAGCCGATAGAAGAATCGAAACTGAACGTCCAg > 1:4632149‑M1/3‑35 (MQ=255) aaAAGCCGATAGAAGAATCGAAACTGAACGTCCAg > 1:19596845‑M1/3‑35 (MQ=255) AAGCCGATAGAAGAATCGAAACTGAACGTCCAgcg < 1:12635491‑M1/35‑1 (MQ=255) AAGCCGATAGAAGAATCGAAACTGAACGTCCAgcg > 1:13725278‑M1/1‑35 (MQ=255) AAGCCGATAGAAGAATCGAAACTGAACGTCCAgcg < 1:1861200‑M1/35‑1 (MQ=255) | ATTATTGTTAGCGGTGCTCATTGCCCCGGAACGCAAGCCGATAGAAGAATCGAAACTGAACGTCCAGCG > REL606/564020‑564088 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |