Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 546,191 IS1 (+) +9 bp 100% coding (346‑354/384 nt) ybcQ → predicted antitermination protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 546191 =0 (0.000)77 (0.780) 35/46 NT 100% coding (346/384 nt) ybcQ predicted antitermination protein
?REL606 546932 = NA (NA)noncoding (768/768 nt) IS1 repeat region
* ? REL606 = 5461990 (0.000)125 (1.220) 42/48 NT 100% coding (354/384 nt) ybcQ predicted antitermination protein
?REL606 = 547699 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 222 total aligned reads displayed.

AGGGATGTTAATGGCATTAGATATCCGGTTAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/546166‑546199
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGA  <  REL606/547699‑547666
                                                                    
AGGGATGTTAATGGCATTAGATATCCGGTTAGAGG                                   >  1:9813676/1‑35
AGGGATGTTAATGGCATTAGATATCCGGTTAGAGG                                   <  1:16390059/35‑1
AGGGATGTTAATGGCATTAGATATCCGGTTAGAGG                                   <  1:10448072/35‑1
AGGGATGTTAATGGCATTAGATATCCGGTTAGAGG                                   >  1:2818694/1‑35
AGGGATGTTAATGGCATTAGATATCCGGTTAGAGG                                   >  1:4062864/1‑35
 GGGATGTTAATGGCATTAGATATCCGGTTAGAGGG                                  >  1:19374848/1‑35
 GGGATGTTAATGGCATTAGATATCCGGTTAGAGGG                                  >  1:13454755/1‑35
  GGATGTTAATGGCATTAGATATCCTGTTAGAGGGT                                 >  1:8961707/1‑35
  GGATGTTAATGGCATTAGATATCCGGTTAGAGGGg                                 >  1:4163813/1‑34
  GGATGTTAATGGCATTAGATATCCGGTTAGAGGGT                                 <  1:2659742/35‑1
   GATGTTAATGGCATTAGATATCCGGTTAGAGGGTG                                >  1:7253375/1‑35
   GATGTTAATGGCATTAGATATCCGGTTAGAGGGTG                                <  1:10861903/35‑1
   GATGTTAATGGCATTAGATATCCGGTTAGAGGGTG                                >  1:15195354/1‑35
     TGTTAATGGCATTAGATATCCGGTTAGAGGGTGAT                              >  1:20326258/1‑35
      GTTAATGGCATTAGATATCCGGTTAGAGGGTGATG                             >  1:9137402/1‑35
      GTTAATGGCATTAGATATCCGGTTAGAGGGTGATG                             >  1:11043340/1‑35
      GTTAATGGCATTAGATATCCGGTTAGAGGGTGATG                             >  1:17823488/1‑35
       TTAATGGCATTAGATATCCGGTTAGAGGGTGATGC                            <  1:14082116/35‑1
        TAATGGCATTAGATATCCGGTTAGAGGGTGATGCT                           >  1:7064787/1‑35
        TAATGGCATTAGATATCCGGTTAGAGGGTGATGCT                           >  1:16951131/1‑35
        TAATGGCATTAGATATCCGGTTAGAGGGTGATGCT                           <  1:20172556/35‑1
        TAATGGCATTAGATATCCGGTTAGAGGGTGATGCT                           >  1:15347100/1‑35
        TAATGGCATTAGATATCCGGTTAGAGGGTGATGCT                           >  1:3447166/1‑35
         AATGGCATTAGATATCCGGTTAGAGGGTGATGCTG                          >  1:9359063/1‑35
         AATGGCATTAGATATCCGGTTAGAGGGTGATGCTG                          >  1:3341420/1‑35
          ATGGCATTAGATATCCGGTTAGAGGGTGATGCTGC                         <  1:14464090/35‑1
           TGGCATTAGATATCCGGTTAGAGGGTGATGCTGCC                        <  1:16594383/35‑1
            GGCATTAGATATCCGGTTAGAGGGTGATGCTGCCA                       >  1:14266819/1‑35
             GCATTAGATATCCTGTTAGAGGGTGATGCTGCCAA                      >  1:15458656/1‑35
             GCATTAGATATCCGGTTAGAGGGTGATGCTGCCAA                      >  1:11352824/1‑35
             GCATTAGATATCCGGTTAGAGGGTGATGCTGCCAA                      <  1:13290230/35‑1
              CATTAGATATCCGGTTAGAGGGTGATGCTGCCAAC                     >  1:613241/1‑35
               ATTAGATATCCGGTTAGAGGGTGATGCTGCCAACT                    >  1:554627/1‑35
               ATTAGATATCCGGTTAGAGGGTGATGCTGCCAACT                    <  1:8205840/35‑1
                TTAGATATCCGGTTAGAGGGTGATGCTGCCAACTT                   <  1:3943545/35‑1
                TTAGATATCCGGTTAGAGGGTGATGCTGCCAACTT                   <  1:4592960/35‑1
                TTAGATATCCGGTTAGAGGGTGATGCTGCCAACTT                   <  1:490671/35‑1
                TTAGATATCCGGTTAGAGGGTGATGCTGCCAACTT                   <  1:651350/35‑1
                 TAGATATCCGGTTAGAGGGTGATGCTGCCAACTTA                  <  1:16184244/35‑1
                 TAGATATCCGGTTAGAGGGTGATGCTGCCAACTTA                  <  1:4238658/35‑1
                 TAGATATCCGGTTAGAGGGTGATGCTGCCAACTTA                  <  1:7801113/35‑1
                 TAGATATCCGGTTAGAGGGTGATGCTGACAACTTA                  <  1:19109768/35‑1
                  AGATATCCGGTTAGAGGGTGATGCTGCCAACTTAC                 >  1:10028640/1‑35
                  AGATATCCGGTTAGAGGGTGATGCTGCCAACTTAC                 <  1:14027416/35‑1
                  AGATATCCGGTTAGAGGGTGATGCTGCCAACTTAC                 >  1:261337/1‑35
                  AGATATCCGGTTAGAGGGTGATGCTGCCAACTTAC                 >  1:16717029/1‑35
                   GATATCCGGTTAGAGGGTGATGCTGCCAACTTACT                >  1:9645306/1‑35
                   GATATCCGGTTAGAGGGTGATGCAGCCAACTTACT                <  1:18265179/35‑1
                   GATATCCGGCTAGAGGGTGATGCTGCCAACTTACT                >  1:2318904/1‑35
                    ATATCCGGTTAGAGTGTGATGCTGCCAACTTACTG               >  1:9477142/1‑35
                    ATATCCGGTTAGAGGGTGATGCTGCCAACTTACTG               <  1:10582198/35‑1
                    ATATCCGGTTAGAGGGTGATGCTGCCAACTTACTG               >  1:14144492/1‑35
                    ATATCAGGTTAGAGGGTGATGCTGCCAACTTACTG               <  1:1005346/35‑1
                     TATCCGGTTAGAGGGTGATGCTGCCCACTTACTGA              <  1:10256773/35‑1
                     TATCCGGTTAGAGGGTGATGCTGCCAACTTACTGA              <  1:14620458/35‑1
                     TATCCGGTTAGAGGGTGATGCTGCCAACTTACTGA              >  1:18697252/1‑35
                     TATCCGGTTAGAGGGTGATGCTGCCAACTTACTGA              >  1:3063595/1‑35
                     TATCAGGTTAGAGGGTGATGCTGCCAACTTACTGA              <  1:7463799/35‑1
                      cTCCGGTTAGAGGGTGATGCTGCCAACTTACTGAT             <  1:15544257/34‑1
                      ATCCGGTTAGAGGGTGATGCTGCCAACTTACTGAT             >  1:8277222/1‑35
                       TCCGGTTAGAGGGTGATGCTGCCAACTTACTGATT            <  1:12763864/35‑1
                         CGGTTAGAGGGTGATGCTGCCAACTTACTGATTTA          <  1:4509084/35‑1
                         CGGTTAGAGGGTGATGCTGCCAACTTACTGATTTA          >  1:19944545/1‑35
                         CGGTTAGAGGGTGATGCTGCCAACTTACTGATTTA          >  1:12244170/1‑35
                          GGTTAGAGGGTGATGCTGCCAACTTACTGATTTAG         <  1:17629856/35‑1
                          GGTTAGAGGGTGATGCTGCCAACTTACTGATTTAG         >  1:13259159/1‑35
                          GGTTAGAGGGTGATGCTGCCAACTTACTGATTTAG         <  1:13118631/35‑1
                          GGTTAGAGGGTGATGCTGCCAACTTACTGATTTAG         <  1:20422181/35‑1
                          GGTTAGAGGGTGATGCTGCCAACTTACTGATTTAG         >  1:5697563/1‑35
                          GGTTAGAGGGTGATGCTGCCAACTTACTGATTTAG         <  1:19807052/35‑1
                          GGTTAGAGGGTGATGCTGCCAACTTACTGATTTAG         >  1:7472802/1‑35
                           GTTAGAGGGTGATGCTGCCAACTTACTGATTTAGT        >  1:15315057/1‑35
                            TTAGAGGGTGATGCTGCCAACTTACTGATTTAGTG       <  1:9048133/35‑1
                            TTAGAGGGTGATGCTGCCAACTTACTGATTTAGTG       >  1:6843431/1‑35
                            TTAGAGGGTGATGCTGCCAACTTACTGATTTAGTG       >  1:15950854/1‑35
                            TTAGAGGGTGATGCTGCCAACTTACTGATTTAGTG       <  1:20546688/35‑1
                             TAGAGGGTGATGCTGCCAACTTACTGATTTAGTGT      <  1:18108447/35‑1
                             TAGAGGGTGATGCTGCCAACTTACTGATTTAGTGT      <  1:18918286/35‑1
                             TAGAGGGTGATGCTGCCAACTTACTGATTTAGTGT      >  1:12840941/1‑35
                              AGAGGGTGATGCTGCCAACTTACTGATTTAGTGTA     <  1:17609642/35‑1
                               GAGGGTGATGCTGCCAACTTACTGATTTAGTGTAT    >  1:3199410/1‑35
                                AGGGTGATGCTTCCAACTTACTGATTTAGTGTATG   >  1:2898119/1‑35
                                AGGGTGATGCTGCCAACTTACTGATTTAGTGTATG   <  1:16118939/35‑1
                                AGGGTGATGCTGCCAACTTACTGATTTAGTGTATG   >  1:17391928/1‑35
                                AGGGTGATGCTGCCAACTTACTGATTTAGTGTATG   <  1:17990041/35‑1
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATta  >  1:5367741/1‑33
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  >  1:8673679/1‑35
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  >  1:18617886/1‑35
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  >  1:18280511/1‑35
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  >  1:11427945/1‑35
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  <  1:11732152/35‑1
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  <  1:121226/35‑1
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  <  1:5894306/35‑1
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  >  1:1367880/1‑35
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  >  1:4591873/1‑35
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  <  1:18800271/35‑1
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  >  1:14909816/1‑35
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  <  1:3498460/35‑1
                                 GGGTGATGCTGCCAACTTACTGATTTAGTGTATGA  >  1:19485800/1‑35
                                 GGGTCATGCTGCCAACTTACTGATTTAGTGTATGA  <  1:4526461/35‑1
                                                                    
AGGGATGTTAATGGCATTAGATATCCGGTTAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/546166‑546199
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGA  <  REL606/547699‑547666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.