New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1157306 =35 (0.340)4 (0.050) 4/38 NT 11.3% coding (1631/3186 nt) rne fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein
?REL606 = 1452435 35 (0.430)intergenic (‑244/‑14) acpD/hrpA acyl carrier protein phosphodiesterase/ATP‑dependent helicase

CAACAAAAATTGACCTTTACGGCCTTGCAGCAGCGGCTGGATTCGCTGATGCTGCGCGACAGACTGCGT  >  REL606/1452401‑1452469
                                  |                                  
caacaaAAATTGACCTTTACGGCCTTGCAGCAGCg                                    <  1:4949744/35‑1 (MQ=255)
caacaaAAATTGACCTTTACGGCCTTGCAGCAGCg                                    <  1:3453073/35‑1 (MQ=255)
caacaaAAATTGACCTTTACGGCCTTGCAGCAGCg                                    >  1:17077191/1‑35 (MQ=255)
caacaaAAATTGACCTTTACGGCCTTGCAGCAGCg                                    <  1:17229373/35‑1 (MQ=255)
 aacaaAAATTGACCTTTACGGCCTTGCAGCAGCga                                   >  1:15430362/1‑34 (MQ=255)
 aacaaAAATTGACCTTTACGGCCTTGCAGCAGCGg                                   <  1:18406681‑M2/35‑2 (MQ=255)
 aacaaAAATTGACCTTTACGGCCTTGCAGCAGCGg                                   >  1:5939704‑M2/1‑34 (MQ=255)
 aacaaAAATTGACCTTTACGGCCTTGCAGCAGCGg                                   <  1:7121499‑M2/35‑2 (MQ=255)
 aacaaAAATTGACCTTTACGGCCTTGCAGCAGCGg                                   <  1:11566845‑M2/35‑2 (MQ=255)
 aacaaAAATTGACCTTTACGGCCTTGCAGCAGCGg                                   >  1:19163935‑M2/1‑34 (MQ=255)
 aacaaAAATTGACCTTTACGGCCTTGCAGAAGCGg                                   <  1:6379086‑M2/35‑2 (MQ=255)
  acaaAAATTGACCTTTACGGCCTTGCAGCAGCGgg                                  <  1:15746550‑M2/35‑3 (MQ=255)
  acaaAAATTGACCTTTACGGCCTTGCAGCAGCGgc                                  <  1:11480904‑M2/35‑3 (MQ=255)
  acaaAAATTGACCTTTACGGCCTTGCAGCAGCGgc                                  >  1:1735460‑M2/1‑33 (MQ=255)
   caaAAATTGACCTTTACGGCCTTGCAGCAGCGgct                                 >  1:6516239‑M2/1‑32 (MQ=255)
    aaaaaTTGACCTTTACGGCCTTGCAGCAGCGggtg                                <  1:3891892‑M2/35‑5 (MQ=255)
    aaaaaTTGACCTTTACGGCCTTGCAGCAGCGgctg                                >  1:18472557‑M2/1‑31 (MQ=255)
     aaaaTTGACCTTTACGGCCTTGCAGCAGCGgctgg                               <  1:3459593‑M2/35‑6 (MQ=255)
     aaaaTTGACCTTTACGGCCTTGCAGCAGCGgctgg                               <  1:8519525‑M2/35‑6 (MQ=255)
     aaaaTTGACCTTTACGGCCTTGCAGCAGCGgctgg                               <  1:5563369‑M2/35‑6 (MQ=255)
     aaaaTTGACCTTTAAGGCCTTGCAGCAGCGgctgg                               >  1:3542467‑M2/1‑30 (MQ=255)
      aaaTTGACCTTTACGGCCTTGCAGCAGCGgctggg                              <  1:20085705‑M2/35‑7 (MQ=255)
      aaaTTGACCTTTACGGCCTTGCAGCAGCGgctggg                              <  1:10837843‑M2/35‑7 (MQ=255)
       aaTTGACCTTTACGGCCTTGCAGCAGCGgctgggg                             <  1:11749525‑M2/35‑8 (MQ=255)
       aaTTGACCTTTACGGCCTTGCAGCAGCGgctgggg                             <  1:8571796‑M2/35‑8 (MQ=255)
        aTTGACCTTTACGGCCTTGCAGCAGCGgctggggt                            <  1:7036638‑M2/35‑9 (MQ=255)
        aTTGACCTTTACGGCCTTGCAGCAGCGgctggggt                            <  1:12833508‑M2/35‑9 (MQ=255)
        aTTGACCTTTACGGCCTTGCAGCAGCGgctggggt                            <  1:2050457‑M2/35‑9 (MQ=255)
        aTTGACCTTTACGGCCTTGCAGCAGCGgctggggg                            <  1:14297942‑M2/35‑9 (MQ=255)
        aTTGACCTTTACGGCCTTGCAGCAGCGGCTGGAtt                            <  1:18785231/35‑1 (MQ=255)
        aTTGACCTTTACGGCCTTGCAGCAGCGGCTGGAtt                            <  1:18343177/35‑1 (MQ=255)
        aTTGACCTTTACGGCCTTGCAGCAGCCGGTGGGtt                            >  1:4009589/1‑35 (MQ=25)
         ttGACCTTTACGGCCTTGCAGCAGCGgctgggttc                           <  1:6950465‑M2/35‑10 (MQ=255)
         ttGACCTTTACGGCCTTGCAGCAGCGgctggggtt                           <  1:14829150‑M2/35‑10 (MQ=255)
         ttGACCTTTACGGCCTTGCAGCAGCGgctggggtt                           <  1:11632577‑M2/35‑10 (MQ=255)
         ttGACCTTTACGGCCTTGCAGCAGCGgctggggtt                           <  1:20529202‑M2/35‑10 (MQ=255)
         ttGACCTTTACGGCCTTGCAGCAGCGGCTGGATTc                           <  1:6767877/35‑1 (MQ=255)
         ttGACCTTTACGGCCTTGCAGCAGCGGCTGGATTc                           <  1:1039767/35‑1 (MQ=255)
             cttttGCGGCCTTGCAGCAGCGGCTGGATTCGCTg                       <  1:139170/33‑1 (MQ=37)
             ccTTTGCGGCCTTGCAGCAGCGGCTGGATTCGCTg                       <  1:6013330/35‑1 (MQ=255)
             ccTTTACGGCCTTGCAGCAGCGgctggggttggcg                       <  1:5710349‑M2/35‑14 (MQ=255)
             ccTTTACGGCCTTGCAGCAGCGgctggggttgctg                       <  1:9022777‑M2/35‑14 (MQ=255)
             ccTTTACGGCCTTGCAGCAGCGGGTGGGTTCGCTg                       >  1:20034126/1‑35 (MQ=25)
             ccTTTACGGCCTTGCAGCAGCGGCTGGGGTCGCTg                       >  1:13394403/1‑35 (MQ=25)
             ccTTTACGGCCTTGCAGCAGCGGCTGGATTCGCTg                       <  1:11609983/35‑1 (MQ=255)
               tttCCGGCCTTGCAGCAGCGGCTGGATTCGCTGAt                     <  1:10093451/35‑1 (MQ=255)
               tttACGGCCTTGCAGCAGCGGCTGGATTCGCTAAt                     <  1:19006134/35‑1 (MQ=255)
               ttaaCGGCCTTGCAGCAGCGGCTGGATTCGCTGAt                     <  1:20438898/32‑1 (MQ=255)
                ttccGGCCTTGCAGCAGCGGCTGGATTCGCTGAtg                    <  1:15662999/32‑1 (MQ=255)
                ttACGGCCTTGCAGCAGCGgctgggggtggcgctg                    <  1:8612109‑M2/35‑17 (MQ=255)
                ttACGGCCTTGCAGCAGCGGCTGGATTCGCTGAtg                    <  1:16047945/35‑1 (MQ=255)
                 tACGGCCTTGCAGCAGCGgctggggttggcggtgg                   <  1:1348160‑M2/35‑18 (MQ=255)
                 tACGGCCTTGCAGCAGCGGCTGGATTCGCTGAtgc                   <  1:10525276/35‑1 (MQ=255)
                 tACGGACTTGCAGCAGCGGCTGGATTCGCTGAtgc                   <  1:5493934/35‑1 (MQ=255)
                  aCGGCCTTGCAGCAGCGgctggggttggcggtggc                  <  1:19635032‑M2/35‑19 (MQ=255)
                  aCGGCCTTGCAGCAGCGGCTGGATTCGCTGAtgct                  <  1:8003889/35‑1 (MQ=255)
                  aCGGCCTTGCAGCAGCGGCTGGATTCGCTGAtgct                  <  1:16985323/35‑1 (MQ=255)
                   cGGCCTTGCAGCAGCGGCTGGATTCGCTGAtgctg                 <  1:17359444/35‑1 (MQ=255)
                   cGGCCTTGCAGCAGCGGCTGGATTCGCTGAtgctg                 <  1:9802020/35‑1 (MQ=255)
                    ggCCTTGCAGCAGCGGCTGGATTCGCTGAtgctgc                <  1:12317949/35‑1 (MQ=255)
                    ggCCTTGCAGCAGCGGCTGGATTCGCTGAtgctgc                <  1:9288427/35‑1 (MQ=255)
                    ggCCTTGCAGCAGCGGCTGGATTCGCTGAtgctgc                <  1:6282548/35‑1 (MQ=255)
                    ggCCTTGCAGCAGCGGCTGGATTCGCTGAtgctgc                <  1:2774405/35‑1 (MQ=255)
                     gCCTTGCAGCAGCGGCTGGATTCGCTGATGCTgcg               <  1:15037374/35‑1 (MQ=255)
                       cTTGCAGCAGCGGCTGGATTCGCTGATGCTGcgcg             <  1:4058700/35‑1 (MQ=255)
                       cTTGCAGCAGCGGCTGGATTCGCTGATGCTGcgcg             <  1:5188100/35‑1 (MQ=255)
                        ttGCAGCAGCGGCTGGATTCGCTGATGCTGCGCGa            <  1:7615370/35‑1 (MQ=255)
                        ttGCAGCAGCGGCTGGATTCGCTGATGCTGCGCGa            <  1:6166676/35‑1 (MQ=255)
                         tGCAGCAGCGGCTGGATTCGCTGATGCTGCGCGAc           <  1:7250253/35‑1 (MQ=255)
                          gcagcaGCGGCTGGATTCGCTGATGCTGCGCGACa          <  1:18192072/35‑1 (MQ=255)
                          gcagcaGCGGCTGGATTCGCTGATGCTGCGCGACa          <  1:9141786/35‑1 (MQ=255)
                          gcagcaGCGGCTGGATTCGCTGATGCTGCGCGACa          <  1:9263548/35‑1 (MQ=255)
                           cagcagCGGCTGGATTCGCTGATGCTGCGCGACAg         <  1:17776238/35‑1 (MQ=255)
                           cagcagCGGCTGGATTCGCTGATGCTGCGCGACAg         <  1:10438356/35‑1 (MQ=255)
                            agcagcGGCTGGATTCGCTGATGCTGCGCGACAGa        <  1:14020875/35‑1 (MQ=255)
                            agcagcGGCTGGATTCGCTGATGCTGCGCGACAGa        <  1:19802298/35‑1 (MQ=255)
                             gcagcGGCTGGATTCGCTGATGCTGCGCGACAGAc       <  1:6152096/35‑1 (MQ=255)
                             gcagcGGCTGGATTCGCTGATGCTGCGCGACAGAc       <  1:6353920/35‑1 (MQ=255)
                              cagcGGCTGGATTCGCTGATGCTGCGCGACAGACt      <  1:13638978/35‑1 (MQ=255)
                                 cGGCTGGATTCGCTGATGCTGCGCGACAGACTGCg   >  1:3134038/1‑35 (MQ=255)
                                  ggCTGGATTCGCTGATGCTGCGCGGCAGACTGCgg  >  1:14480931/1‑34 (MQ=255)
                                  ggCTGGATTCGCTGATGCTGCGCGACAGACTGCgg  >  1:9177593/1‑34 (MQ=255)
                                  |                                  
CAACAAAAATTGACCTTTACGGCCTTGCAGCAGCGGCTGGATTCGCTGATGCTGCGCGACAGACTGCGT  >  REL606/1452401‑1452469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.