New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2183026 =73 (0.710)12 (0.160) 5/34 NT 15.2% intergenic (+74/‑56) yohK/cdd predicted inner membrane protein/cytidine deaminase
?REL606 = 3512380 82 (1.130)intergenic (‑122/‑211) yhhX/yhhY predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase

Only 100 of 170 total aligned reads displayed.

GCGTTGCATAATTAATGAGATTCAGATCACATATAAAGCCACAACGGGTTCGTAAACTGTTATCCCATT  >  REL606/2182992‑2183060
                                  |                                  
gcgTTGCATAATTAATGAGATTCAGATCACAtata                                    >  1:10579678/1‑35 (MQ=255)
gcgTTGCATAATTAATGAGATTCAGATCACAtata                                    <  1:6619360/35‑1 (MQ=255)
cccgtggataaattgagatcgaaagatcaaaaaaa                                    >  1:19745571‑M1/35‑35 (MQ=255)
cccgtggataaattgagaacgaaagatcaaaaaaa                                    >  1:2770833‑M1/35‑35 (MQ=255)
 cgTTGCATAATTAATGAGATTCAGATCACATATaa                                   >  1:14600240/1‑35 (MQ=255)
 cgTTGCATAATTAATGAGATTCAGATCACATATaa                                   >  1:18074580/1‑35 (MQ=255)
 cgTTGCATAATTAATGAGATTCAGATCACATATaa                                   <  1:12026169/35‑1 (MQ=255)
 ccgtggataaattgagaacgaaagatcaaaaaaaa                                   <  1:5160531‑M1/2‑1 (MQ=255)
 ccgtggataaattgagaacgaaagatcaaaaaaaa                                   <  1:12923617‑M1/2‑1 (MQ=255)
  gTTGCATAATTAATGAGATTCAGATCACATATaaa                                  >  1:4824993/1‑35 (MQ=255)
  gTTGCATAATTAATGAGATTCAGATCACATATaaa                                  >  1:13684911/1‑35 (MQ=255)
  gTTGCATAATTAATGAGATTCAGATCACATATaaa                                  <  1:20039449/35‑1 (MQ=255)
  gTTGCATAATTAATGAGATTCAGATCACATATaaa                                  <  1:2809129/35‑1 (MQ=255)
  gTTGCATAATTAATGAGATTCAGATCACATATaaa                                  >  1:1577583/1‑35 (MQ=255)
  gTTGCATAATTAATGAGATTCAGATCACATATaaa                                  >  1:3403355/1‑35 (MQ=255)
  cgtggataaattgagaacgaaagatcaaaaaaaaa                                  >  1:4118029‑M1/33‑35 (MQ=255)
  cgtggataaattgagaacgaaagatcaaaaaaaaa                                  >  1:16434492‑M1/33‑35 (MQ=255)
  cgtggataaattgagaacgaaagatcaaaaaaaaa                                  >  1:11692822‑M1/33‑35 (MQ=255)
  cgtggataaattgagaacgaaagatcaaaaaaaaa                                  >  1:9480778‑M1/33‑35 (MQ=255)
  cgtggataaattgagaacgaaagatcaaaaaaaaa                                  <  1:18576006‑M1/3‑1 (MQ=255)
   ttGCATAATTAATGAGATTCAGATCACATATAAAg                                 <  1:16033092/35‑1 (MQ=255)
   ttGCATAATTAATGAGATTCAGATCACATATAAAg                                 >  1:18054692/1‑35 (MQ=255)
   ttGCATAATTAATGAGATTCAGATCACATATAAAg                                 <  1:19082626/35‑1 (MQ=255)
   ttGCATAATTAATGAGATTCAGATCACATATAAAg                                 >  1:634424/1‑35 (MQ=255)
   gtggataaattgagaacgaaagatcaaaaaaAAAg                                 <  1:19729622‑M1/4‑1 (MQ=255)
   gtggataaattgagaacgaaagatcaaaaaaAAAg                                 >  1:12164257‑M1/32‑35 (MQ=255)
   gtggataaattgagaacgaaagatcaaaaaaAAAg                                 <  1:16028015‑M1/4‑1 (MQ=255)
    tggataaattgagaacgaaagatcaaaaaaaagcc                                <  1:9527668‑M1/5‑4 (MQ=255)
    tGCATAATTAATGAGATTCAGATCACATATAAAGc                                >  1:18284705/1‑35 (MQ=255)
    tGCATAATTAATGAGATTCAGATCACATATAAAGc                                >  1:2522818/1‑35 (MQ=255)
    tGCATAATTAATGAGATTCAGATCACATATAAAGc                                >  1:589492/1‑35 (MQ=255)
    tGCATAATTAATGAGATTCAGATCACATATAAAGc                                <  1:6290354/35‑1 (MQ=255)
     ggataaattgagaacgaaagatcaaaaaaaaaacc                               <  1:3803507‑M1/6‑4 (MQ=255)
     gCATAATTAATGAGATTCAGATCACATATAAAGcc                               >  1:12439585/1‑35 (MQ=255)
     gCATAATTAATGAGATTCAGATCACATATAAAGcc                               <  1:764668/35‑1 (MQ=255)
     gCATAATTAATGAGATTCAGATCACATATAAAGcc                               >  1:3939282/1‑35 (MQ=255)
     gCATAATTAATGAGATTCAGATCACATATAAAGcc                               <  1:19359064/35‑1 (MQ=255)
     gCATAATTAATGAGATTCAGATCACATATAAAGcc                               <  1:11241573/35‑1 (MQ=255)
      gataaattgagaacgaaagatcaaaaaaAAAGCca                              >  1:11777784‑M1/29‑35 (MQ=255)
      cATAATTAATGAGATTCAGATCACATATAAAGCca                              >  1:16534283/1‑35 (MQ=255)
      cATAATTAATGAGATTCAGATCACATATAAAGCca                              <  1:15206853/35‑1 (MQ=255)
       aTAATTAATGAGATTCAGATCACATATAAAGCcac                             >  1:17765076/1‑35 (MQ=255)
         aattaatGAGATTCAGATCACATATAAAGCCACaa                           >  1:10163492/1‑35 (MQ=255)
         aattaatGAGATTCAGATCACATATAAAGCCACaa                           >  1:20314097/1‑35 (MQ=255)
          attaatGAGATTCAGATCACATATAAAGCCACAAc                          >  1:9213493/1‑35 (MQ=255)
          attaatGAGATTCAGATCACATATAAAGCCACAAc                          >  1:20057706/1‑35 (MQ=255)
           ttaatGAGATTCAGATCACATATAAAGCCACAACg                         >  1:9043529/1‑35 (MQ=255)
           ttaatGAGATTCAGATCACATATAAAGCCACAACg                         >  1:1207346/1‑35 (MQ=255)
           ttaatGAGATTCAGATCACATATAAAGCCACAACg                         >  1:1261556/1‑35 (MQ=255)
            taatGAGATTCAGATCACATATAAAGCCACAACgg                        >  1:11859402/1‑35 (MQ=255)
             aatGAGATTCAGATCACATATAAAGCCACAACggg                       >  1:616157/1‑35 (MQ=255)
             aatGAGATTCAGATCACATATAAAGCCACAACggg                       >  1:18938225/1‑35 (MQ=255)
              atGAGATTCAGATCACATATAAAGCCACAACGGGt                      >  1:15172476/1‑35 (MQ=255)
              atGAGATTCAGATCACATATAAAGCCACAACGGGt                      >  1:15586626/1‑35 (MQ=255)
               tGAGATTCAGATCACATATAAAGCCACAACGGGtt                     >  1:5090090/1‑35 (MQ=255)
               tGAGATTCAGATCACATATAAAGCCACAACGGGtt                     >  1:8519622/1‑35 (MQ=255)
               tGAGATTCAGATCACATATAAAGCCACAACGGGtt                     >  1:16795306/1‑35 (MQ=255)
                 agaTTCAGATCACATATAAAGCCACAACGTGTTCg                   >  1:8342684/1‑35 (MQ=255)
                   aTTCAGATCACATATAAAGCCACAACGGGTTCGTa                 >  1:7956063/1‑35 (MQ=255)
                    ttaaGATCAAATAAAAAGCCACAACGGGTTCGTaa                <  1:5710898/32‑1 (MQ=18)
                     taagaccaaaaaaAAAGCCACAACGGGTTCGTaaa               >  1:7269684‑M1/14‑35 (MQ=255)
                     tCAGATCACATATAAAGCCACAACGGGTTCGTaaa               >  1:1767454/1‑35 (MQ=255)
                     tCAGACCAAATAAAAAGCCACAACGGGTTCGTaaa               <  1:5290747/35‑1 (MQ=21)
                      caaatcaaaaaaAAAGCCACAACGGGTTCGTAAAc              >  1:17808384‑M1/13‑35 (MQ=255)
                      cAGATCACATATAAAGCCACAACGGGTTCGTAAAc              >  1:7325121/1‑35 (MQ=255)
                      cAGATCACATATAAAGCCACAACGGGTTCGTAAAc              >  1:6101198/1‑35 (MQ=255)
                       agatcaaataaAAAGCCACAACGGGTTCGTAAACt             >  1:658693‑M1/12‑35 (MQ=255)
                       aGATCACATATAAAGCCACAACGGGTTCGTAAACt             >  1:8320597/1‑35 (MQ=255)
                       aGATCACATATAAAGCCACAACGGGTTCGTAAACt             >  1:20053401/1‑35 (MQ=255)
                       aGATCACATATAAAGCCACAACGGGTTCGTAAACt             >  1:14606493/1‑35 (MQ=255)
                       aGATCACATATAAAGCCACAACGGGTTCGTAAACt             >  1:15071249/1‑35 (MQ=255)
                        aatcaaaaaaAAAGCCACAACGGGTTCGTAAACTg            >  1:11285710‑M1/11‑35 (MQ=255)
                         atcaaataaAAAGCCACAACGGGTTCGTAAACTGt           >  1:15470787‑M1/10‑35 (MQ=255)
                         atcaaaaaaAAAGCCACAACGGGTTCGTAAACTGt           >  1:4710806‑M1/10‑35 (MQ=255)
                          tcacaaaaAAAGCCACAACGGGTTCGTAAACTGtt          >  1:10940642‑M1/9‑35 (MQ=255)
                          tCACATATAAAGCCACAACGGGTTCGTAAACTGtt          >  1:3261191/1‑35 (MQ=255)
                          tCACATATAAAGCCACAACGGGTTCGTAAACTGtt          >  1:5407125/1‑35 (MQ=255)
                           cacaTAAAAAGCCACAACGGGTTCGTAAACTGTTa         <  1:14869762/35‑1 (MQ=255)
                            acaTATAAAGCCACAACGGGTTCGTAAACTGTTAt        >  1:16642998/1‑35 (MQ=255)
                            acaTATAAAGCCACAACCGGTTCGTAAACTGTTAt        >  1:12345203/1‑35 (MQ=255)
                             caTATAAAGCCACAACGGGTTCGTAAACTGTTATc       >  1:5702245/1‑35 (MQ=255)
                             caTATAAAGCCACAACGGGTTCGTAAACTGTTATc       >  1:80785/1‑35 (MQ=255)
                             aataaAAAGCCACAACGGGTTCGTAAACTGTTATc       >  1:14916440‑M1/6‑35 (MQ=255)
                              atatAAAGCCACAACGGGTTCGTAAACTGTTATcc      >  1:4684757/1‑35 (MQ=255)
                              atatAAAGCCACAACGGGTTCGTAAACTGTTATcc      >  1:6554515/1‑35 (MQ=255)
                              aaaaAAAGCCACAACGGGTTCGTAAACTGTTATcc      >  1:18687608‑M1/5‑35 (MQ=255)
                               tataAAGCCACAACGGGTTCGTAAACTGTTATccc     >  1:17277501/1‑35 (MQ=255)
                               tataAAGCCACAACGGGTTCGTAAACTGTTATccc     >  1:2344628/1‑35 (MQ=255)
                               tataAAGCCACAACGGGTTCGTAAACTGTTATccc     >  1:1079716/1‑35 (MQ=255)
                               tataAAGCCACAACGGGTTCGTAAACTGTTATccc     >  1:131564/1‑35 (MQ=255)
                               tataAAGCCACAACGGGTTCGTAAACTGTTATccc     >  1:13964180/1‑35 (MQ=255)
                               taaAAAGCCACAACGGGTTCGTAAACTGTTATccc     >  1:1496584‑M1/4‑35 (MQ=255)
                               aaaAAAGCCACAACGGGTTCGTAAACTGTTATccc     >  1:4380870‑M1/4‑35 (MQ=255)
                                ataAAGCCACAACGGGTTCGTAAACTGTTATCCCa    >  1:7106627/1‑35 (MQ=255)
                                aaAAAGCCACAACGGGTTCGTAAACTGTTATCCCa    >  1:17527816‑M1/3‑35 (MQ=255)
                                 taAAGCCACAACGGGTTCGTAAACTGTTATCCCAt   >  1:10019189/1‑35 (MQ=255)
                                 taAAGCCACAACGGGTTCGTAAACTGTTATCCCAt   >  1:16705050/1‑35 (MQ=255)
                                 aAAAGCCACAACGGGTTCGTAAACTGTTATCCCAt   >  1:15918728‑M1/2‑35 (MQ=255)
                                  AAAGCCACAACGGGTTCGTAAACTGTTATCTCAtt  >  1:7787117‑M1/1‑35 (MQ=255)
                                  AAAGCCACAACGGGTTCGTAAACTGTTATCCCAtt  >  1:15386371‑M1/1‑35 (MQ=255)
                                  |                                  
GCGTTGCATAATTAATGAGATTCAGATCACATATAAAGCCACAACGGGTTCGTAAACTGTTATCCCATT  >  REL606/2182992‑2183060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.