New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)108 (1.150) 38/44 NT 100% noncoding (1/1443 nt) IS150 repeat region
?REL606 1270660 = 0 (0.000)intergenic (‑167/+238) ldrC/chaA toxic polypeptide, small/calcium/sodium:proton antiporter

Only 100 of 166 total aligned reads displayed.

CATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/664720‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCCGGATAATTCCGGCTTGGTGTGGATACTACTTC  >  REL606/1270660‑1270693
                                                                   
CATTTCATCGTCCAACAAAATGGGTGCGGTACACt                                  <  1:18282339/35‑2
 cTTTCATCGTCCAACAAAATGGGTGCAGTACACCG                                 <  1:3413617/34‑1
  TTTCATCGTCCAACAAAATGGGTGCAGTACACttt                                >  1:3344436/1‑32
  TTTCATCGTCCAACAAAATGGGTGCAGTACACttt                                >  1:3387218/1‑32
  TTTCATCGTCCAACAAAATGGGTGCAGTACACttt                                <  1:14629445/35‑4
  TTTCATCGTCCAACAAAATGGGTGCAGTACACttt                                <  1:17537838/35‑4
  TTTCATCGTCCAACAAAATGGGTGCAGTACACttt                                <  1:7106239/35‑4
  TTTCATCGTCCAACAAAATGGGTGCAGTACACCGG                                <  1:10745957/35‑1
  TTTCATCGTCCAACAAAATGGGTGCAGTACACCGG                                <  1:8679949/35‑1
  TTTCATCGTCCAACAAAATGGGTGCAGTACACCGG                                <  1:16528465/35‑1
   TTCATCGTCCAACAAAATGGGTGCAGTACAGCGGg                               >  1:510941/1‑34
   TTCATCGTCCAACAAAATGGGTGCAGTACACCGGA                               >  1:19608870/1‑35
   TTCATCGTCCAACAAAATGGGTGCAGTACACCGGA                               >  1:17814169/1‑35
   TTCATCGTCCAACAAAATGGGTGCAGTACACCGGA                               <  1:2268160/35‑1
   TTCATCGTCCAACAAAATGGGTGCAGTACACCGGA                               <  1:18551158/35‑1
    TCATCGTCCAACAAAATGGGTGCAGTACACCGGAT                              >  1:1383778/1‑35
    TCATCGTCCAACAAAATGGGTGCAGTACACCGGAT                              >  1:18468603/1‑35
     CATCGTCCAACAAAATGGGTGCAGTACACCGGATA                             >  1:678557/1‑35
     CATCGTCCAACAAAATGGGTGCAGTACACCGGATA                             >  1:18935695/1‑35
     CATCGTCCAACAAAATGGGTGCAGTACACCGGATA                             >  1:6182223/1‑35
     CATCGTCCAACAAAATGGGTGCAGTACACCGGATA                             >  1:2978503/1‑35
     CATCGTCCAACAAAATGGGTGCAGTACACCGGATA                             <  1:3317655/35‑1
      ATCGTCCAACAAAATGGGTGCAGTACACCGGATAA                            >  1:18011711/1‑35
      ATCGTCCAACAAAATGGGTGCAGTACACCGGATAA                            >  1:975130/1‑35
      ATCGTCCAACAAAATGGGTGCAGTACACCGGATAA                            >  1:4544123/1‑35
      ATCGTCCAACAAAATGGGTGCAGTACACCGGATAA                            <  1:1582879/35‑1
      ATCGTCCAACAAAATGGGTGCAGTACACCGGATAA                            <  1:15445427/35‑1
       TCGTCCAACAAAATGGGTGCAGTACACCGGATAAT                           >  1:2567517/1‑35
        CGTCCAACAAAATGGGTGCAGTACACCGGATAATT                          <  1:5114765/35‑1
        CGTCCAACAAAATGGGTGCAGTACACCGGATAATT                          <  1:1749754/35‑1
        CGTCCAACAAAATGGGTGCAGTACACCGGATAATT                          >  1:18177070/1‑35
        CGTCCAACAAAATGGGTGCAGTACACCGGATAATT                          >  1:8027857/1‑35
        CGTCCAACAAAATGGGTGCAGTACACCGGATAATT                          >  1:11197589/1‑35
         GTCCAACAAAATGGGTGCAGTACACCGGATAATTC                         <  1:12647191/35‑1
          TCCAACAAAATGGGTGCAGTACACCGGATAATTCC                        >  1:7170847/1‑35
          TCCAACAAAATGGGTGCAGTACACCGGATAATTCC                        <  1:8349301/35‑1
           CCAACAAAATGGGTGCAGTACACCGGATAATTCCG                       <  1:17062495/35‑1
           CCAACAAAATGGGTGCAGTACACCGGATAATTCCG                       <  1:7841533/35‑1
            CAACAAAATGGGTGCAGTACACCGGATAATTCCGG                      >  1:1565032/1‑35
            CAACAAAATGGGTGCAGTACACCGGATAATTCCGG                      <  1:20132584/35‑1
             AACAAAATGGGTGCAGTACACCGGATAATTCCGGC                     >  1:6594748/1‑35
             AACAAAATGGGTGCAGTACACCGGATAATTCCGGC                     <  1:20446626/35‑1
             AACAAAATGGGTGCAGTACACCGGATAATTCCGGC                     >  1:12247824/1‑35
              ACAAAATGGGTGCAGTACACCGGATAATTCCGGCT                    >  1:8719848/1‑35
              ACAAAATGGGTGCAGTACACCGGATAATTCCGGCT                    <  1:7168312/35‑1
               CAAAATGGGTGCAGTACACCGGATAATTCCGGCTT                   <  1:18305980/35‑1
               CAAAATGGGTGCAGTACACCGGATAATTCAGGCTT                   <  1:8521544/35‑1
                AAAATGGGTGCAGTACACCGGATAATTCCGGCTTG                  >  1:6453919/1‑35
                AAAATGGGTGCAGTACACCGGATAATTCCGGCTTG                  >  1:652842/1‑35
                 AAATGGGTGCAGTACACCGGATAATTCCGGCTTGG                 >  1:13185734/1‑35
                 AAATGGGTGCAGTACACCGGATAATTCCGGCTTGG                 <  1:14548795/35‑1
                 AAATGGGTGCAGTACACCGGATAATTCCGGCTTGG                 >  1:9001359/1‑35
                  AATGGGTGCAGTACACCGGATAATTCCGGCTTGGg                >  1:5534363/1‑34
                  AATGGGTGCAGTACACCGGATAATTCCGGCTTGGT                <  1:10205608/35‑1
                  AATGGGTGCAGTACACCGGATAATTCCGGCTTGGT                >  1:15066881/1‑35
                  AATGGGTGCAGTACACCGGATAATTCCGGCTTGGT                >  1:12179022/1‑35
                  AATGGGTGCAGTACACCGGATAATTCCGGCTTGGT                >  1:8097429/1‑35
                   ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTG               >  1:74025/1‑35
                   ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTG               <  1:1877147/35‑1
                   ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTG               >  1:6103302/1‑35
                   ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTG               <  1:4062927/35‑1
                   ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTG               <  1:5783868/35‑1
                    TGGGTGCAGTACACCGGATAATTCCGGCTTGGTtt              >  1:18038300/1‑33
                    TGGGTGCAGTACACCGGATAATTCCGGCTTGGTGT              >  1:2166878/1‑35
                     GGGTGCAGTACACCGGATAATTCCGGCTTGGTGTG             >  1:17150382/1‑35
                     GGGTGCAGTACACCGGATAATTCCGGCTTGGTGTG             <  1:17827641/35‑1
                     GGGTGCAGTACACCGGATAATTCCGGCTTGGTGTG             >  1:2391376/1‑35
                      GGTGCAGTACACCGGATAATTCCGGCTTGGTGTGG            >  1:10605788/1‑35
                      GGTGCAGTACACCGGATAATTCCGGCTTGGTGTGG            >  1:6831598/1‑35
                      GGTGCAGTACACCGGATAATTCCGGCTTGGTGTGG            <  1:18564815/35‑1
                      GGTGCAGTACACCGGATAATTCCGGCTTGGTGTGG            >  1:20482087/1‑35
                      GGTGCAGTACACCGGATAATTCCGGCTTGGTGTGG            >  1:16986399/1‑35
                      GGTGCAGTACACCGGATAATTCCGGCTTGGTGGGG            >  1:4908476/1‑35
                       GTGCAGTACACCGGATAATTCCGGCTTGGTGTGGA           >  1:4218032/1‑35
                       GTGCAGTACACCGGATAATTCCGGCTTGGTGTGGA           >  1:20332995/1‑35
                       GTGCAGTACACCGGATAATTCCGGCTTGGTGTGGA           >  1:11913242/1‑35
                        TGCAGTACACCGGATAATTCCGGCTTGGTGTGGAT          <  1:862105/35‑1
                         GCAGTACACCGGATAATTCCGGCTTGGTGTGGATA         >  1:14335424/1‑35
                          CAGTACACCGGATAATTCCGGCTTGGTGTGGATAa        >  1:12895668/1‑34
                          CAGTACACCGGATAATTCCGGCTTGGTGTGGATAC        <  1:1887257/35‑1
                           AGTACACCGGATAATTCCGGCTTGGTGTGGATAat       >  1:6279909/1‑33
                           AGTACACCGGATAATTCCGGCTTGGTGTGGATAat       >  1:4622263/1‑33
                           AGTACACCGGATAATTCCGGCTTGGTGTGGATAaa       >  1:3766351/1‑33
                           AGTACACCGGATAATTCCGGCTTGGTGTGGATACT       <  1:15711015/35‑1
                           AGTACACCGGATAATTCCGGCTTGGTGTGGATACT       <  1:13751007/35‑1
                           AGTACACCGGATAATTCCGGCTTGGTGTGGATACT       <  1:7615753/35‑1
                            GTACACCGGATAATTCCGGCTTGGTGTGGATACaa      >  1:11838710/1‑33
                            GTACACCGGATAATTCCGGCTTGGTGTGGATACTA      <  1:10103181/35‑1
                            GTACACCGGATAATTCCGGCTTGGTGTGGATAATA      >  1:2819396/1‑35
                             TACACCGGATAATTCCGGCTTGGTGTGGATACTAC     <  1:17429204/35‑1
                             TACACCGGATAATTCCGGCTTGGTGTGGATACTAC     <  1:7209705/35‑1
                             TACACCGGATAATTCCGGCTTGGTGTGGATACTAC     >  1:16252567/1‑35
                             TACACCGGATAATTCCGGCTTGGTGTGGATACTAC     <  1:2005058/35‑1
                             TACACCGGATAATTCCGGCTTGGTGTGGATACTAC     <  1:4028059/35‑1
                             TACACCGGATAATTCCGGCTTGGTGTGGATAATAg     >  1:5519654/1‑34
                              ACACCGGATAATTCCGGCTTGGTGTGGATACTACT    <  1:17634419/35‑1
                              ACACCGGATAATTCCGGCTTGGTGTGGATACTACT    <  1:12997198/35‑1
                              ACACCGGATAATTCCGGCTTGGTGTGGATAATACT    >  1:5210222/1‑35
                                ACCGGATAATTCCGGCTTGGTGTGGATACTACTTC  <  1:11300825/35‑1
                                ACCGGATAATTCCGGCTTGGTGTGGATACTACTTC  >  1:346822/1‑35
                                                                   
CATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/664720‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCCGGATAATTCCGGCTTGGTGTGGATACTACTTC  >  REL606/1270660‑1270693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.