New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3600745 =41 (0.400)9 (0.120) 3/34 NT 18.7% intergenic (+12/+39) treF/yhjB cytoplasmic trehalase/predicted DNA‑binding response regulator in two‑component regulatory system
?REL606 3792210 = 49 (0.670)coding (316/414 nt) ECB_03532 hypothetical protein

TTGGTTTGTACGGCGAACCATAATATTTTTACAGCCAGCCGCTAACTTCCTGCTGGCTGTAAAATTATC  >  REL606/3600711‑3600779
                                  |                                  
ttGGTTTGTCCGGCGAACCATAATATTTTTAcagc                                    <  1:3468941/35‑1 (MQ=255)
ttGGTTTGTACGGCGAACCATAATATTTTTAcagc                                    <  1:15518854/35‑1 (MQ=255)
ttGGTTTGTACGGCGAACCATAATATTTTTAcagc                                    <  1:15498402/35‑1 (MQ=255)
ttGGTTTGTACGGCGAACCATAATATTTTTAcagc                                    <  1:14323821/35‑1 (MQ=255)
ttGGTTTGTACGGCGAACCATAATATTTTTAcagc                                    <  1:12889128/35‑1 (MQ=255)
 tGGTTTGTACGGCGAACCATAATATTTTTAcagcc                                   >  1:4606770/1‑35 (MQ=255)
  ggTTTGTACGGCGAACCATAATATTTTTAcagcca                                  >  1:919462/1‑35 (MQ=255)
  ggTTTGTACGGCGAACCATAATATTTTTAcagcca                                  >  1:8327153/1‑35 (MQ=255)
  ggTTTGTACGGCGAACCATAATATTTTTAcagcca                                  >  1:4831552/1‑35 (MQ=255)
   gTTTGTACGGCGAACCATAATATTTTTAcagccag                                 >  1:15973104/1‑35 (MQ=255)
   gTTTGTACGGCGAACCATAATATTTTTAcagccag                                 >  1:12127480/1‑35 (MQ=255)
   gTTTGTACGGCGAACCATAATATTTTTAcagccag                                 >  1:6738073/1‑35 (MQ=255)
   gTTTGTACGGCGAACCATAATATTTTTAcagccag                                 >  1:14030436/1‑35 (MQ=255)
    tttGTACGGCGAACCATAATATTTTTAcagccagc                                >  1:1736109/1‑35 (MQ=255)
     ttGTACGGCGAACCATAATATTTTTACagccagcc                               >  1:6957872/1‑35 (MQ=255)
         aCGGCGAACCATAATATTTTTACAGCCAGCCGCTa                           >  1:911840/1‑35 (MQ=255)
          cGGCGAACCATAATATTTTTACAGCCAGCCGCTaa                          >  1:3748438/1‑35 (MQ=255)
          cGGCGAACCATAATATTTTTACAGCCAGCCGCTaa                          >  1:8716884/1‑35 (MQ=255)
           ggCGAACCATAATATTTTTACAGCCAGCCGCTAAc                         >  1:13596294/1‑35 (MQ=255)
           ggCGAACCATAATATTTTTACAGCCAGCCGCTAAc                         >  1:10721783/1‑35 (MQ=255)
            gCGAACCATAATATTTTTACAGCCAGCCGCTAACt                        >  1:14138937/1‑35 (MQ=255)
             cGAACCATAATATTTTTACAGCCAGCCGCTAACtt                       >  1:10557928/1‑35 (MQ=255)
             cGAACCATAATATTTTTACAGCCAGCCGCTAACtt                       >  1:19933275/1‑35 (MQ=255)
             cGAACCATAATATTTTTACAGCCAGCCGCTAACtt                       >  1:15419894/1‑35 (MQ=255)
             cGAACCATAATATTTTTACAGCCAGCCGCTAACtt                       >  1:14895827/1‑35 (MQ=255)
             cGAACCATAATATTTTTACAGCCAGCCGCTAACtt                       >  1:13900155/1‑35 (MQ=255)
              gAACCATAATATTTTTACAGCCAGCCGCTAACTTc                      >  1:8790127/1‑35 (MQ=255)
              gAACCATAATATTTTTACAGCCAGCCGCTAACTTc                      >  1:5308233/1‑35 (MQ=255)
              gAACCATAATATTTTTACAGCCAGCCGCTAACTTc                      >  1:1666016/1‑35 (MQ=255)
              gAACCATAATATTTTTACAGCCAGCCGCTAACTTc                      >  1:13958360/1‑35 (MQ=255)
               aaCCATAATATTTTTACAGCCAGCCGCTAACTTcc                     >  1:1609582/1‑35 (MQ=255)
                aCCATAATATTTTTACAGCCAGCCGCTAACTTCct                    >  1:8197758/1‑35 (MQ=255)
                aCCATAATATTTTTACAGCCAGCCGCTAACTTCct                    >  1:5583556/1‑35 (MQ=255)
                 ccATAATATTTTTACAGCCAGCCGCTAACTTCctg                   >  1:9835563/1‑35 (MQ=255)
                 ccATAATATTTTTACAGCCAGCCGCTAACTTCctg                   >  1:12321670/1‑35 (MQ=255)
                  cATAATATTTTTACAGCCATCCGCTAACTTCctgc                  >  1:10872027/1‑35 (MQ=255)
                  cATAATATTTTTACAGCCAGCCGCTAACTTCctgc                  >  1:11687946/1‑35 (MQ=255)
                  cATAATATTTTTACAGCCAGCCGCTAACTTCctgc                  >  1:8071246/1‑35 (MQ=255)
                  cATAATATTTTTACAGCCAGCCGCTAACTTCctgc                  >  1:13354106/1‑35 (MQ=255)
                  cATAATATTTTTACAGCCAGCCGCTAACTTCctgc                  >  1:20495158/1‑35 (MQ=255)
                   ataataTTTTTACAGCCAGCCGCTAACTTCctgct                 >  1:4854408/1‑35 (MQ=255)
                    taataTTTTTACAGCCAGCCGCTAACTTCctgctg                >  1:1735537/1‑35 (MQ=255)
                     aataTTTTTACAGCCAGCCGCTAACTTCCTgctgg               >  1:7808965/1‑35 (MQ=255)
                     aataTTTTTACAGCCAGCCGCTAACTTCCTgctgg               >  1:11887530/1‑35 (MQ=255)
                      atatTTTTACAGCCAGCCGCTAACTTCCTgctggc              >  1:17490043/1‑35 (MQ=255)
                      atatTTTTACAGCCAGCCGCTAACTTCCTgctggc              >  1:17163695/1‑35 (MQ=255)
                       tatTTTTACAGCCAGCCGCTAACTTCCTgctggct             >  1:10915206/1‑35 (MQ=255)
                        ttttccccacCCAGCCGCTAACTTCCTgctggctg            >  1:251892‑M1/11‑35 (MQ=255)
                        tttcccccagCCAGCCGCTAACTTCCTgctggctg            >  1:19324930‑M1/11‑35 (MQ=255)
                        tttcccccacCCAGCCGCTAACTTCCTgctggctg            >  1:18383786‑M1/11‑35 (MQ=255)
                        atTTTTACAGCCAGCCGCTAACTTCCTgctggctg            >  1:18539837/1‑35 (MQ=255)
                         tttttACAGCCAGCCGCTAACTTCCTgctggctgg           >  1:14515299/1‑34 (MQ=255)
                         tttccccacCCAGCCGCTAACTTCCTGCTGGCTGt           >  1:4584055‑M1/10‑35 (MQ=255)
                         tttccccacCCAGCCGCTAACTTCCTGCTGGCTGt           >  1:11500917‑M1/10‑35 (MQ=255)
                         ttcccccacCCAGCCGCTAACTTCCTGCTGGCTGt           >  1:18986811‑M1/10‑35 (MQ=255)
                         ttcccccacCCAGCCGCTAACTTCCTGCTGGCTGt           >  1:7128610‑M1/10‑35 (MQ=255)
                          ttttACAGCCAGCCGCTAACTTCCTgctggctggg          >  1:8615783/1‑33 (MQ=255)
                          ttttACAGCCAGCCGCTAACTTCCTgctggctggg          >  1:1716668/1‑33 (MQ=255)
                          ttttACAGCCAGCCGCTAACTTCCTgctggctggg          >  1:19146348/1‑33 (MQ=255)
                          ttttACAGCCAGCCGCTAACTTCCTgctggctggg          >  1:7632138/1‑33 (MQ=255)
                           tttACAGCCAGCCGCTAACTTCCTgctggctgggg         >  1:9765109/1‑32 (MQ=255)
                           tttACAGCCAGCCGCTAACTTCCTgctggctgggg         >  1:18911333/1‑32 (MQ=255)
                            ccccagCCAGCCGCTAACTTCCTGCTGGCTGTaaa        >  1:16482691‑M1/7‑35 (MQ=255)
                            ccccacCCAGCCGCTAACTTCCTGCTGGCTGTaaa        >  1:15179166‑M1/7‑35 (MQ=255)
                             cccccCCAGCCGCTAACTTCCTGCTGGCTGTaaaa       >  1:3284442‑M1/6‑35 (MQ=255)
                             cccacCCAGCCGCTAACTTCCTGCTGGCTGTaaaa       >  1:17511086‑M1/6‑35 (MQ=255)
                             cccacCCAGCCGCTAACTTCCTGCTGGCTGTaaaa       >  1:1828605‑M1/6‑35 (MQ=255)
                             cccacCCAGCCGCTAACTTCCTGCTGGCTGTaaaa       >  1:17291307‑M1/6‑35 (MQ=255)
                              ccacCCAGCCGCTAACTTCCTGCTGGCTGTAAAAt      >  1:3805542‑M1/5‑35 (MQ=255)
                               cccCCAGCCGCTAACTTCCTGCTGGCTGTAAAAtt     >  1:13270661‑M1/4‑35 (MQ=255)
                                 gccagccGCTAACTTCCTGCTGGCTGTAAAATTAt   <  1:711120/35‑1 (MQ=255)
                                 gccagccGCTAACTTCCTGCTGGCTGTAAAATTAt   <  1:8069732/35‑1 (MQ=255)
                                 gccagccGCTAACTTCCTGCTGGCTGTAAAATTAt   <  1:11672414/35‑1 (MQ=255)
                                 cCCAGCCGCTAACTTCCTGCTGGCTGTAAAATTAt   >  1:14859057‑M1/2‑35 (MQ=255)
                                 cCCAGCCGCTAACTTCCTGCTGGCTGTAAAATTAt   >  1:11960457‑M1/2‑35 (MQ=255)
                                  CCAGCCGCTAACTTCCTGCTGGCTGTAAAATTATc  >  1:3429137‑M1/1‑35 (MQ=255)
                                  |                                  
TTGGTTTGTACGGCGAACCATAATATTTTTACAGCCAGCCGCTAACTTCCTGCTGGCTGTAAAATTATC  >  REL606/3600711‑3600779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.