New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 146226959 (0.570)9 (0.100) 8/42 NT 14.8% intergenic (‑31/‑310) mokB/trg regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor
?REL606 = 3894996 NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 111 total aligned reads displayed.

TCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTG  >  REL606/1462235‑1462303
                                  |                                  
tCATTCGTTGGCCTCGGTTGATAGAAATATCGGTC                                    <  1:3162945‑M1/35‑1 (MQ=255)
 cATTCGTTGGCCTCGGTTGATAGAAATATCGGTCt                                   <  1:20361136‑M1/35‑2 (MQ=255)
  aTTCGTTGGCCTCGGTTGATAGAAATAtcggtcgg                                  <  1:2974292/35‑1 (MQ=255)
  aTTCGTTGGCCTCGGTTGATAGAAATAtcggtcgg                                  <  1:19638769/35‑1 (MQ=255)
  aTTCGTTGGCCTCGGTTGATAGAAATAtcggtcgg                                  <  1:10761147/35‑1 (MQ=255)
  aTTCGTTGGCCTCGGTTGATAGAAATAtcggtcgg                                  <  1:14825949/35‑1 (MQ=255)
  aTTCGTTGGCCTCGGTTGATAGAAATAtcgggcgg                                  >  1:5811033/1‑35 (MQ=255)
  aTTCGTTGGCCTCGGTTGATAGAAATAtcgggcgg                                  >  1:18422908/1‑35 (MQ=255)
  aTTCGTTGGCCTCGGTTGATAGAAATAtcgggcgg                                  >  1:17656431/1‑35 (MQ=255)
  aTTCGTTGGCCTCGGTTGATAGAAATATCGGTCtg                                  >  1:10525253‑M1/1‑33 (MQ=255)
   ttCGTTGGCCTCGGTTGATAGAAATATCGGTCtgt                                 >  1:18084192‑M1/1‑32 (MQ=255)
   ttCGTTGGCCTCGGTTGATAGAAATATCGGTCggg                                 <  1:1601589/35‑1 (MQ=255)
   ttCGTTGGCCTCGGTTGATAGAAATATCGGTCggg                                 <  1:15622383/35‑1 (MQ=255)
   ttCGTTGGCCTCGGTTGATAGAAATATCGGTCggg                                 <  1:13064192/35‑1 (MQ=255)
   ttCGTTGGCCTCGGTTGATAGAAATATCGGTCggg                                 <  1:13011927/35‑1 (MQ=255)
   ttCGTTGGCCTCGGTTGATAGAAATATCGGGCggg                                 >  1:10164810/1‑35 (MQ=255)
    tCGTTGGCCTCGGTTGATAGAAATATCGGGCgggg                                >  1:12163334/1‑35 (MQ=255)
     cGTTGGCCTCGGTTGATAGAAATATCGGTCtgtac                               <  1:6579525‑M1/35‑6 (MQ=255)
     cGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGc                               <  1:4293419/35‑1 (MQ=255)
       ttGGCCTCGGTTGATAGAAATATCGGGCGGGGGCt                             >  1:10647853/1‑35 (MQ=25)
        tGGCCTCGGTTGATAGAAATATCGGTCGGGGCCtt                            <  1:15288603/35‑1 (MQ=255)
         ggCCTCGGTTGATAGAAATATCGGTCtgtactgac                           <  1:10982498‑M1/35‑10 (MQ=255)
         ggCCTCGGTTGATAGAAATATCGGTCGGGGCCTTc                           <  1:9209468/35‑1 (MQ=255)
         ggCCTCGGTTGATAGAAATATCGGGCGGGGCCTTc                           >  1:17368911/1‑35 (MQ=255)
         ggCCTAGGTTGATAGAAATATCGGTCGGGGCCTTc                           <  1:9794234/35‑1 (MQ=255)
         ggCATCGGTTGATAGAAATATCGGTCGGGGCCTTc                           <  1:5598814/35‑1 (MQ=255)
          gCCTCGGTTGATAGAAATATCGGTCtgtactgacc                          >  1:8002557‑M1/1‑25 (MQ=255)
          gCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCg                          <  1:8147371/35‑1 (MQ=255)
          gCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCg                          <  1:13574881/35‑1 (MQ=255)
          gCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCg                          <  1:9665061/35‑1 (MQ=255)
          gCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCg                          <  1:15636473/35‑1 (MQ=255)
           ccTCGGTTGATAGAAATATCGGTCtgtactgaccc                         >  1:996720‑M1/1‑24 (MQ=255)
           ccTCGGTTGATAGAAATATCGGTCtgtactgaccc                         >  1:336443‑M1/1‑24 (MQ=255)
           ccTCGGTTGATAGAAATATCGGTCGGGGCCTTCGt                         <  1:11760184/35‑1 (MQ=255)
           ccTCGGTTGATAGAAATATCGGTCGGGGCCTTCGt                         <  1:3343948/35‑1 (MQ=255)
           ccTCGGTTGATAGAAATATCGGGCGGGGGCTTCGt                         >  1:10786145/1‑35 (MQ=25)
            cTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTc                        >  1:3344038/1‑35 (MQ=255)
            cTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTc                        <  1:13367056/35‑1 (MQ=255)
            cTCGGTTGATAGAAATATCGGTCGGGGCCCTCGtt                        >  1:4712015/1‑34 (MQ=255)
            cTCGGTTGATAGAAATATCGGTAGGGGCCTTCGTc                        <  1:6774450/35‑1 (MQ=255)
              cagTTGATAGAAATATCGGTCGGGGCCTTCGTCtt                      >  1:6754251/3‑35 (MQ=255)
              cGGTTGATAGAAATATCGGTCtgtactgaccccaa                      >  1:19164457‑M1/1‑21 (MQ=255)
              cGGTTGATAGAAATATCGGTCGGGGCCTTCGTCtt                      <  1:1130382/35‑1 (MQ=255)
              cGGTTGATAGAAATATCGGGCGGGGCCTTCGTCtt                      >  1:16626831/1‑35 (MQ=255)
              cGGTTGATAGAAATATCGGGCGGGGCCTTCGTCtt                      >  1:3160057/1‑35 (MQ=255)
                gTTGATAGAAATATCGGGCGGGGCCTTCGTCTTTc                    >  1:16191751/1‑35 (MQ=255)
                 ttGATAGAAATATCGGTCGGGGCCTTCGTCTTTCt                   >  1:1653396/1‑35 (MQ=255)
                 ttGATAGAAATATCGGTCGGGGCCTTCGTCTTTCt                   <  1:5320594/35‑1 (MQ=255)
                  tGATAGAAATATCGGTCtgtactgaccccaaaaag                  <  1:10601260‑M1/35‑19 (MQ=255)
                  tGATAGAAATATCGGTCtgtactgaccccaaaaag                  >  1:10662110‑M1/1‑17 (MQ=255)
                  tGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTg                  >  1:3626024/1‑35 (MQ=255)
                  tGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTg                  <  1:11027152/35‑1 (MQ=255)
                   gATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGa                 <  1:15067461/35‑1 (MQ=255)
                    aTAGAAATATCGGTCGGGGCCTTCGTCTTTCTGAt                <  1:20123245/35‑1 (MQ=255)
                    aTAGAAATATCGGGCGGGGCCTTCGTCTTTTTGAt                >  1:4919584/1‑35 (MQ=37)
                      aGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTc              <  1:17700677/35‑1 (MQ=255)
                       gAAATATCGGTCGGGGCCTTCGTCTTTCTGATTcc             <  1:5356238/35‑1 (MQ=255)
                       gAAATATCGGTCGGGGCCTTCGTCTTTCTGATTcc             <  1:3289458/35‑1 (MQ=255)
                        aaaTATCGGTCtgtactgaccccaaaaagttggac            >  1:1041574‑M1/1‑11 (MQ=255)
                        aaaTATCGGTCTGGGCCTTCGTCTTTCTTATTccc            >  1:3020554/1‑35 (MQ=37)
                        aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTccc            <  1:6715382/35‑1 (MQ=255)
                        aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTccc            <  1:9615666/35‑1 (MQ=255)
                        aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTccc            <  1:20387245/35‑1 (MQ=255)
                        aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTccc            >  1:2384131/1‑35 (MQ=255)
                        aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTccc            <  1:2630578/35‑1 (MQ=255)
                         nntatCNGTCGGGGCCTTCGTCTTTCTGATTCCCn           <  1:300461/33‑1 (MQ=255)
                         aaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCg           <  1:3240850/35‑1 (MQ=255)
                         aaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCg           <  1:20180822/35‑1 (MQ=255)
                         aaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCg           <  1:1581620/35‑1 (MQ=255)
                         aaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCg           <  1:4439475/35‑1 (MQ=255)
                          atatCGGTCGGGGCCTTCGTCTTTCTGATTCCCgg          >  1:8809359/1‑35 (MQ=255)
                          atatCGGTCGGGGCCTTCGTCTTTCTGATTCCCgg          <  1:7344426/35‑1 (MQ=255)
                           tatCGGTCtgtactgaccccaaaaagttggacagt         >  1:11353601‑M1/1‑8 (MQ=255)
                           tatCGGTCtgtactgaccccaaaaagttggacagt         >  1:3924763‑M1/1‑8 (MQ=255)
                           tatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGt         <  1:14909081/35‑1 (MQ=255)
                           tatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGt         <  1:9907961/35‑1 (MQ=255)
                           tatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGt         >  1:18402843/1‑35 (MQ=255)
                           tatCGGTCGGGGCCCTCGTCTTTCTGATTCCCGGt         >  1:10354169/1‑35 (MQ=255)
                            ctcGGTTtgtactgaccccaaaaagttggacagtt        <  1:8112808‑M1/34‑29 (MQ=255)
                            atCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGtt        >  1:9048951/1‑35 (MQ=255)
                            atCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGtt        <  1:1160391/35‑1 (MQ=255)
                             tcggtcggGGCCTTCGTCTTTCTGATTCCCGGTTa       <  1:18007534/35‑1 (MQ=255)
                             tcggtcggGGCCTTCGTCTTTCTGATTCCCGGTTa       <  1:1785221/35‑1 (MQ=255)
                              cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAg      <  1:5804227/35‑1 (MQ=255)
                              cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAg      <  1:11156552/35‑1 (MQ=255)
                              cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAg      <  1:14647556/35‑1 (MQ=255)
                              cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAg      >  1:16894224/1‑35 (MQ=255)
                              cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAg      >  1:16962870/1‑35 (MQ=255)
                              cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAg      <  1:8835795/35‑1 (MQ=255)
                              cGGCCtgtactgaccccaaaaagttggacagttaa      <  1:18484193‑M1/35‑31 (MQ=255)
                               ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc     <  1:12122514/35‑1 (MQ=255)
                               ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc     <  1:12979237/35‑1 (MQ=255)
                               ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc     <  1:17461387/35‑1 (MQ=255)
                               ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc     <  1:13297849/35‑1 (MQ=255)
                               ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc     <  1:723608/35‑1 (MQ=255)
                               ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc     <  1:11223714/35‑1 (MQ=255)
                               ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc     <  1:15413535/35‑1 (MQ=255)
                                gtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGcc    <  1:15117741/35‑1 (MQ=255)
                                  cggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTg  <  1:15797388/35‑1 (MQ=255)
                                  cggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTg  <  1:1934413/35‑1 (MQ=255)
                                  |                                  
TCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTG  >  REL606/1462235‑1462303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.