New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2532852 =62 (0.600)3 (0.040) 3/40 NT 4.7% coding (127/2007 nt) hyfR DNA‑binding transcriptional activator, formate sensing
?REL606 4530131 = 69 (0.810)coding (410/903 nt) fimH minor component of type 1 fimbriae

TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2532889‑2532852
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC  >  REL606/4530131‑4530164
                                                                        
nGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGG                                       >  1:8253869/2‑35
TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGG                                       <  1:11448917/35‑1
TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGG                                       <  1:11592706/35‑1
TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGG                                       <  1:11788247/35‑1
TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGG                                       <  1:20168858/35‑1
TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGG                                       >  1:13949463/1‑35
 GCAGTTCAATAAGTTGTACCGGGCTGAACGGCGGg                                      >  1:2662817/1‑34
 GCAGTTCAATAAGTTGTACCGGGCTGAACGGCGGC                                      <  1:5701079/35‑1
 GCAGTTCAATAAGTTGTACCGGGCTGAACGGCGGC                                      <  1:8160841/35‑1
  CAGTTCAATAAGTTGTACCGGGCTGAACGGCGGCG                                     <  1:8922800/35‑1
  CAGTTCAATAAGTTGTACCGGGCTGAACGGCGGCG                                     >  1:13750556/1‑35
   AGTTCAATAAGTTGTACCGGGCTGAACGGCGGGGG                                    >  1:1939768/1‑35
   AGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG                                    >  1:16450042/1‑35
   AGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG                                    >  1:6114685/1‑35
   AGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG                                    <  1:3043629/35‑1
   AGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG                                    <  1:18768531/35‑1
   AGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG                                    >  1:13338423/1‑35
     TTCAATAAGTTGTACCGGGCTGAACGGCGGGGGGg                                  >  1:7744493/1‑34
     TTCAATAAGTTGTACCGGGCTGAACGGCGGGGGGa                                  >  1:4892402/1‑34
     TTCAATAAGTTGTACCGGGCTGAACGGCGGCGGGg                                  >  1:15850381/1‑34
     TTCAATAAGTTGTACCGGGCTGAACGGCGGCGGGg                                  >  1:15367478/1‑34
     TTCAATAAGTTGTACCGGGCTGAACGGCGGCGGGC                                  >  1:796138/1‑35
      TCAATAAGTTGTACCGGGCTGAACGGCGGCGGGgg                                 >  1:5901981/1‑33
      TCAATAAGTTGTACCGGGCTGAACGGCGGCGGGag                                 >  1:6671856/1‑33
        AATAAGTTGTACCGGGCTGAACGGCGGCGGGAGGG                               >  1:11302816/1‑35
         ATAAGTTGTACCGGGCTGAACGGCGGCGGGGGGGG                              >  1:13811607/1‑35
            AGTTGTACCGGGCTGAACGGCGGCGGGCGGGGGGG                           >  1:4744017/1‑35
               TGTACCGGGCTGAACGGCGGCGGGCGGGGGGGGGA                        >  1:8961613/1‑35
                                  GCGGGCGGGGGGGCGATTAAAGCTGGCTCATTAAT     <  1:7817126/35‑1
                                   CGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATT    >  1:3534207/1‑35
                                   CGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATT    <  1:18886377/35‑1
                                   CGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATT    <  1:9061370/35‑1
                                   CGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATT    <  1:16560927/35‑1
                                   CGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATT    >  1:6782857/1‑35
                                    GGGCGGGGGGGCGATTAAAGCTGTCTCATTAATTG   >  1:6604039/1‑35
                                    GGGCGGGGGGGCGATTAAAGCTGGCTCATTAATTG   <  1:5178215/35‑1
                                    GGGCGGGGGGGCGATTAAAGCTGGCTCATTAATTG   <  1:3200481/35‑1
                                    GGGCGGGGGGGCGATTAAAGCTGGCTCATTAATTG   >  1:20171663/1‑35
                                     GGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC  <  1:6451277/35‑1
                                     GGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC  >  1:5574841/1‑35
                                     GGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC  <  1:20233775/35‑1
                                     GGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC  <  1:17725739/35‑1
                                     GGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC  >  1:9214707/1‑35
                                                                        
TGCAGTTCAATAAGTTGTACCGGGCTGAACGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2532889‑2532852
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGC  >  REL606/4530131‑4530164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.