New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 738279 | 23 (0.220) | 14 (0.230) | 3/28 | NT | 31.3% | coding (1582/1767 nt) | sdhA | succinate dehydrogenase flavoprotein subunit |
? | REL606 | = 3686151 | 48 (0.800) | coding (411/741 nt) | yiaT | hypothetical protein |
Only 100 of 114 total aligned reads displayed.
GGATAACCTGATGGAAACGGCGTATGCAACGGCTGTTTCTGCCAACTTCCGTACCGAAAGCCGTGGCGC > REL606/738245‑738313 | ggATAACCTGATGGAAACGGCGTATGCAACGGCTG < 1:14875948‑M1/35‑1 (MQ=255) gATAACCTGATGGAAACGGCGTATGCAACGGCTGt < 1:10280969/35‑1 (MQ=255) gATAACCTGATGGAAACGGCGTATGCAACGGCTGt < 1:10669175/35‑1 (MQ=255) gATAACCTGATGGAAACGGCGTATGCAACGGCTGg > 1:7015642‑M1/1‑34 (MQ=255) aTAACCTGATGGAAACGGCGTATGCAACGGCTGgg > 1:15132670‑M1/1‑33 (MQ=255) aTAACCTGATGGAAACGGCGTATGCAACGGCTGgg > 1:8459912‑M1/1‑33 (MQ=255) aTAACCTGATGGAAACGGCGTATGCAACGGCTGgg > 1:7711143‑M1/1‑33 (MQ=255) aTAACCGGATGGAACCGGCGTATGCAACGGCTGtt < 1:18099999/35‑1 (MQ=37) tAACCTGATGGAAACGGCGTATGCAACTGCTGttt > 1:18730300/1‑35 (MQ=255) tAACCTGATGGAAACGGCGTATGCAACGGCTGggg > 1:7130877‑M1/1‑32 (MQ=255) tAACCTGATGGAAACGGCGTATGCAACGGCTGggg > 1:20549116‑M1/1‑32 (MQ=255) tAACCTGATGGAAACGGCGTATGCAACGGCTGggg > 1:8587025‑M1/1‑32 (MQ=255) tAACCTGATGGAAACGGCGTATGCAACGGCTGggg > 1:18353451‑M1/1‑32 (MQ=255) aaCCTGATGGAAACGGCGTATGCAACGGCTGgggg > 1:5314132‑M1/1‑31 (MQ=255) aaCCTGATGGAAACGGCGTATGCAACGGCTGgggg > 1:4136274‑M1/1‑31 (MQ=255) aaCCTGATGGAAACGGCGTATGCAACGGCTGgggg > 1:14845854‑M1/1‑31 (MQ=255) aaCCTGATGGAAACGGCGTATGCAACGGCTGgggg > 1:13481049‑M1/1‑31 (MQ=255) aaCCTGATGGAAACGGCGTATGCAACGGCTGTTTc < 1:15775110/35‑1 (MQ=255) aaCCTGATGGAAACGGCGTATGCAACGGCTGTTTc < 1:3699086/35‑1 (MQ=255) aaCCTGATGGAAACGGCGTATGCAACGGCTGTTTc < 1:4006365/35‑1 (MQ=255) cccTGATGGAAACGGCGTATGCAACGGCTGTTTCt < 1:10195534/34‑1 (MQ=255) aCCTGATGGAAACGGCGTATGCAACGGCTGggggt > 1:19847067‑M1/1‑30 (MQ=255) aCCTGATGGAAACGGCGTATGCAACGGCTGggggg > 1:20189968‑M1/1‑30 (MQ=255) aCCTGATGGAAACGGCGTATGCAACGGCTGggggg > 1:7764397‑M1/1‑30 (MQ=255) aCCTGATGGAAACGGCGTATGCAACGGCTGggggg > 1:9762873‑M1/1‑30 (MQ=255) aCCTGATGGAAACGGCGTATGCAACGGCTGggggg > 1:13464865‑M1/1‑30 (MQ=255) aCCTGATGGAAACGGCGTATGCAACGGCTGTTTCt < 1:395476/35‑1 (MQ=255) ccTGATGGAAACGGCGTATGCAACGGCTGgggggg > 1:10006171‑M1/1‑29 (MQ=255) ccTGATGGAAACGGCGTATGCAACGGCTGgggggg > 1:10584170‑M1/1‑29 (MQ=255) ccTGATGGAAACGGCGTATGCAACGGCTGgggggg > 1:6558491‑M1/1‑29 (MQ=255) ccTGATGGAAACGGCGTATGCAACGGCTGgggggg > 1:20097752‑M1/1‑29 (MQ=255) ccTGATGGAAACGGCGTATGCAACGGCTGgggggg > 1:12125571‑M1/1‑29 (MQ=255) ccTGATGGAAACGGCGTATGCAACGGCTGTTTCTg < 1:12561718/35‑1 (MQ=255) cTGATGGAAACGGCGTATGCAACGGCTGggggggg > 1:12276588‑M1/1‑28 (MQ=255) cTGATGGAAACGGCGTATGCAACGGCTGggggggg > 1:14944317‑M1/1‑28 (MQ=255) cTGATGGAAACGGCGTATGCAACGGCTGggggggg > 1:13907138‑M1/1‑28 (MQ=255) cTGATGGAAACGGCGTATGCAACGGCTGggggggg > 1:14818217‑M1/1‑28 (MQ=255) cTGATGGAAACGGCGTATGCAACGGCTGTTTCTGc < 1:4825680/35‑1 (MQ=255) cTGATGGAAACGGCGTATGCAACGGCTGTTTCTGc < 1:16638796/35‑1 (MQ=255) tGATGGAAACGGCGTATGCAACGGCTGgggggggg > 1:7092237‑M1/1‑27 (MQ=255) ggATGGAAACGGCGTATGCAACGGCTGTTTCTGcc < 1:18132156/34‑1 (MQ=255) gATGGAAACGGCGTATGCAACGGCTGggggggggg > 1:10007689‑M1/1‑26 (MQ=255) gATGGAAACGGCGTATGCAACGGCTGggggggggg > 1:19057288‑M1/1‑26 (MQ=255) gATGGAAACGGCGTATGCAACGGCTGTTTCTGCCa < 1:6002004/35‑1 (MQ=255) aTGGAAACGGCGTATGCAACGGCTGTTTCTGCCaa < 1:11589716/35‑1 (MQ=255) aTGAAAACGGCGTATGCAACGGCTGTTTCTGCCaa < 1:10714321/35‑1 (MQ=255) tGGAACCGGCGTATGCAACGGCTGTTTCTGCCAAc < 1:14502458/35‑1 (MQ=255) tGGAACCGGCGTATGCAACGGCTGTTTCTGCCAAc < 1:11740980/35‑1 (MQ=255) tGGAAACGGCGTATGCAACTGCTGTTTCTGCCAAc > 1:20322684/1‑35 (MQ=255) tGGAAACGGCGTATGCAACGGCTGTTTCTGCCAAc < 1:15236864/35‑1 (MQ=255) tGGAAACGGCGTATGCAACGGCTGTTTATGCCAAc < 1:13954386/35‑1 (MQ=255) ggAAACGGCGTATGCAACGGCTGTTTCTGCCAACt < 1:13928224/35‑1 (MQ=255) ggAAACGGCGTATGCAACGGCTGTTTCTGCAAACt < 1:5426570/35‑1 (MQ=255) gAAGCGGCGTATGCAACGGCTGTTTCTGCCAACtt < 1:11758568/35‑1 (MQ=255) gAACCGGCGTATGCAACGGCTGTTTCTGCCAACtt < 1:13449971/35‑1 (MQ=255) gAAACGGCGTATGCAACGGCTGTTTCTGCCAACtt < 1:11127056/35‑1 (MQ=255) aaaCGGCGTATGCAACGGCTGTTTCTGCCAACTTc < 1:15288128/35‑1 (MQ=255) aaaCGGCGTATGCAACGGCTGTTTCTGCCAACTTc < 1:14015852/35‑1 (MQ=255) aaaCGGCGTATGCAACGGCTGTTTCTGCCAACTTc < 1:18520192/35‑1 (MQ=255) gCAACGGCTGggtgggggagctatcggtattccac < 1:1821544‑M1/35‑26 (MQ=255) gCAACCGCTGggtgggggagctatcggtattccac < 1:2545726‑M1/35‑26 (MQ=255) aaCGGCTGggtgggggagctatcggtattccacaa < 1:12533285‑M1/35‑28 (MQ=255) aCGGCTGggtgggggagctatcggtattccacaaa < 1:15424540‑M1/35‑29 (MQ=255) aCGGCTGggtgggggagctatcggtattccacaaa < 1:11868994‑M1/35‑29 (MQ=255) cGGCTGggtgggggagctatcggtattccacaaaa < 1:9747988‑M1/35‑30 (MQ=255) cGGCTGggtgggggagctatcggtattccacaaaa < 1:7745091‑M1/35‑30 (MQ=255) cGGCTGggggggggagctatcggtattccacaaaa > 1:18567096‑M1/1‑6 (MQ=255) ggCTGggtgggggagctatcggtattccacaaaat > 1:5536708‑M1/1‑5 (MQ=255) ggCTGggtgggggagctatcggtattccacaaaat < 1:15606344‑M1/35‑31 (MQ=255) ggCTGggtgggggagctatcggtattccacaaaat < 1:2389011‑M1/35‑31 (MQ=255) ggCTGggtgggggagctatcggtattccacaaaat < 1:14715631‑M1/35‑31 (MQ=255) ggCTGggtgggggagctatcggtattccacaaaat < 1:12643955‑M1/35‑31 (MQ=255) ggCTGggtgggggagctatcgggattccacaaaat > 1:2887404‑M1/1‑5 (MQ=255) gCTGggtgggggagctatcggtattccacaaaatg < 1:3286444‑M1/35‑32 (MQ=255) gCTGggtgggggagctatcggtattccacaaaatg > 1:6690039‑M1/1‑4 (MQ=255) gCTGggtgggggagctatcggtattccacaaaatg > 1:15467146‑M1/1‑4 (MQ=255) gCTGggtgggggagctatcggtattccacaaaatg < 1:9119499‑M1/35‑32 (MQ=255) gCTGTTTCTGCCAACTTCCGTACCGAAAGCCGTgg > 1:17625448/1‑35 (MQ=255) gCTGTTTCTGCCAACTTCCGTACCGAAAGCCGTgg > 1:4191982/1‑35 (MQ=255) ttgggtgggggagctatcggtattccacaaaatgc < 1:5690885‑M1/34‑33 (MQ=255) cTGggtgggggagctatgggtattccacaaaatgc > 1:16654990‑M1/1‑3 (MQ=255) cTGggtgggggagctatcggtattccacaaaatgc < 1:10957298‑M1/35‑33 (MQ=255) cTGggtgggggagctatcggtattccacaaaatgc < 1:19370106‑M1/35‑33 (MQ=255) cTGggtgggggagctatcggtattccacaaaatgc < 1:15936037‑M1/35‑33 (MQ=255) cTGggtgggggagctatcggtattccacaaaatgc > 1:1435498‑M1/1‑3 (MQ=255) cTGTTTCTGCCAACTTCCGTACCGAAAGCCGTGgc > 1:1504785/1‑35 (MQ=255) tgggttggggagctatcggtattccacaaaatgca > 1:11538173‑M1/1‑2 (MQ=255) tgggtgggggagctatcggtattccacaaaatgca > 1:9488132‑M1/1‑2 (MQ=255) tgggtgggggagctatcggtattccacaaaatgca > 1:9132011‑M1/1‑2 (MQ=255) tgggtgggggagctatcggtattccacaaaatgca > 1:14267212‑M1/1‑2 (MQ=255) tgggtgggggagctatcggtattccacaaaatgca < 1:15989903‑M1/35‑34 (MQ=255) tgggtgggggagctatcggtattccacaaaatgca < 1:4535986‑M1/35‑34 (MQ=255) tgggtgggggagctatcggtattccacaaaatgca < 1:11429928‑M1/35‑34 (MQ=255) tgggtgggggagctatcggtattccacaaaatgca < 1:4661692‑M1/35‑34 (MQ=255) tgggtgggggagctatcggtattccacaaaatgca > 1:1259695‑M1/1‑2 (MQ=255) tGTTTCTGCCAACTTCCGTACCGAAAGCCGTGgcg > 1:2913623/1‑35 (MQ=255) tGTTTCTGCCAACTTCCGTACCGAAAGCCGTGgcg > 1:12072328/1‑35 (MQ=255) gggtgggggagctatcggtattccacaaaatgcag < 1:18796831‑M1/35‑35 (MQ=255) gggtgggggagctatcggtattccacaaaatgcag < 1:2788312‑M1/35‑35 (MQ=255) gggtgggggagctatcggtattccacaaaatgcag < 1:7449033‑M1/35‑35 (MQ=255) | GGATAACCTGATGGAAACGGCGTATGCAACGGCTGTTTCTGCCAACTTCCGTACCGAAAGCCGTGGCGC > REL606/738245‑738313 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |