New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 924268 =101 (0.980)9 (0.120) 3/36 NT 13.4% coding (722/1431 nt) ybjT conserved protein with NAD(P)‑binding Rossmann‑fold domain
?REL606 = 4366448 41 (0.530)coding (1078/3324 nt) yjeP predicted mechanosensitive channel

AGCGCCGCTGGTTGATCCCCATCCCCCTCCCCACCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/924307‑924268
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctgCTACGGCAAATTCATCAGGCCGACGGTCAGCCG  <  REL606/4366448‑4366416
                                                                         
AGCGCCGCTGGTTGATCCCCATCCCCCTCCCCACC                                        >  1:7892919/1‑35
AGCGCCGCTGGTTGATCCCCATCCCCCTCCCCACC                                        <  1:4365142/35‑1
AGCGCCGCTGGTTGATCCCCATCCCCCTCCCCACC                                        >  1:2538210/1‑35
AGCGCCGCTGGTTGATCCCCATCCCCCTCCCCACC                                        >  1:14567123/1‑35
AGCGCCGCTGGTTGATCCCCATCCCCCTCCCCACC                                        <  1:10435300/35‑1
AGCGCCGCTGGTTGATCCCCATCCACCTCCCCACC                                        <  1:16758406/35‑1
 GCGCCGCTGGTTGATCCCCATCCCCCTCCCCACCC                                       <  1:2800378/35‑1
 GCGCCGCTGGTTGATCCCCATCCCCCTCCCCACCC                                       >  1:7661657/1‑35
 GCGCCGCTGGTTGATCCCCATCCCCCTCCCCACCC                                       >  1:14362642/1‑35
 GCGCCGCTGGTTGATCCACATCCCCCTCCCCACCC                                       <  1:6449764/35‑1
  CGCCGCTGGTTGATCCCCATCCCCCTCCCCACCCG                                      >  1:2817481/1‑35
  CGCCGCTGGTTGATCCCCATCCCCCTCCCCACCCG                                      <  1:79333/35‑1
  CGCCGCTGGTTGATCCCCATCCCCCTCCCCACCCG                                      >  1:9725041/1‑35
  CGCCGCTGGTTGATCCCCATCCCCCTCCCCACCCG                                      <  1:10797280/35‑1
   GCCGCTGGTTGATCCCCATCCCCCTCCCCACCCGC                                     <  1:4855475/35‑1
   GCCGCTGGTTGATCCCCATCCCCCTCCCCACCCGC                                     <  1:19450252/35‑1
   GCCGCTGGTTGATCCCCATCCCCCTCCCCACCCGC                                     >  1:16758700/1‑35
   GCCGCTGGTTGATCCCCATCCCCCTCCCCACCCGC                                     >  1:17857781/1‑35
   GCCGCTGGTTGATCCCCATCCCCCTCCCCACCCGC                                     >  1:17373706/1‑35
    aCGCTGGTTGATCCCCATCCCCCTCCCCACCCGCT                                    <  1:18161341/34‑1
    CCGCTGGTTGATCCCCATCCCCCTCCCCACCCGCT                                    <  1:6960923/35‑1
    CCGCTGGTTGATCCCCATCCCCCTCCCCACCCGCT                                    <  1:9620085/35‑1
     CGCTGGTTGATCCCCATCCCCCTCCCCACCCGCTG                                   >  1:6531384/1‑35
                       CCCCCCCCCACCCGCTGCTACGGCAAATTCATCAG                 <  1:7444544/35‑1
                        CCCCCCCCACCCGCTGCTACGGCAAATTCATCAGG                <  1:165442/35‑1
                         cccCCCCACCCGCTGCTACGGCAAATTCATCAGGC               <  1:16142693/32‑1
                          ccaCCCACCCGCTGCTACGGCAAATTCATCAGGCC              <  1:15744185/32‑1
                          ccCCCCACCCGCTGCTACGGCAAATTCATCAGGCC              <  1:5400478/33‑1
                          ccCCCCACCCGCTGCTACGGCAAATTCATCAGGCC              <  1:2584000/33‑1
                           cCCCCACCCGCTGCTACGGCAAATTCATCAGGCCG             <  1:12571008/34‑1
                           cCCCCACCCGCTGCTACGGCAAATTCATCAGGCCG             <  1:14018094/34‑1
                            CCCCGCCCGCTGCTACGGCAAATTCATCAGGCCGA            <  1:1479523/35‑1
                            CCCCACCCGCTGCTACGGCAAATTCATCAGGCCGA            <  1:1547205/35‑1
                             CCCCCCCGCTGCTACGGCAAATTCATCAGGCCGAC           <  1:4885443/35‑1
                             CCCACCCGCTGCTACGGCAAATTCATCAGGCCGAC           <  1:8485821/35‑1
                             CCCACCCGCTGCTACGGCAAATTCATCAGGCCGAC           <  1:311831/35‑1
                             CCCACCCGCTGCTACGGCAAATTCATCAGGCCGAC           <  1:3206408/35‑1
                              CCACCCGCTCCTACGGCAAATTCATCAGGCCGACG          <  1:17798732/35‑1
                                gCCCGCTGCTACGGCAAATTCATCAGGCCGACGGT        <  1:1665220/34‑1
                                cCCCGCTGCTACGGCAAATTCATCAGGCCGACGGT        <  1:3942359/34‑1
                                ACCCGCTGCTACGGCAAATTCATCAGGCCGACGGT        <  1:15331849/35‑1
                                 CCCGCTGCTACGGCAAATTCATCAGGCCGACGGTC       <  1:18430381/35‑1
                                  CCGCTGCTACGGCAAATTCATCAGGCCGACGGTCA      <  1:10671536/35‑1
                                  CCGCTGCTACGGCAAATTCATCAGGCCGACGGTCA      >  1:8651467/1‑35
                                   CGCTGCTACGGCAAATTCATCAGGCCGACGGTCAG     <  1:7030825/35‑1
                                   CGCTGCTACGGCAAATTCATCAGGCCGACGGTCAG     <  1:8344730/35‑1
                                   CGCTGCTACGGCAAATTCATCAGGCCGACGGTCAG     >  1:6336475/1‑35
                                   CGCTGCTACGGCAAATTCATCAGGCCGACGGTCAG     >  1:3297909/1‑35
                                   CGCTGCTACGGCAAATTCATCAGGCCGACGGTCAG     <  1:2729873/35‑1
                                   CGCTGCTACGGCAAATTCATCAGGCCGACGGTCAG     <  1:10687930/35‑1
                                   CGCTGCTACGGCAAATTCATCAGGCCGACGGTCAG     >  1:18823459/1‑35
                                   CGCTGCTACGGCAAATTCATCAGGCCGACGGTCAG     <  1:13951773/35‑1
                                   CGCTGCTACGGCAAATTCATCAGGCCGACGGGCAG     >  1:2777630/1‑35
                                    GCTGCTACGGCAAATTCATCAGGCCGACGGTCAGC    <  1:16614491/35‑1
                                    GCTGCTACGGCAAATTCATCAGGCCGACGGTCAGC    <  1:11660946/35‑1
                                    GCTGCTACGGCAAATTCATCAGGCCGACGGGCAGC    >  1:1429759/1‑35
                                     gTGCTACGGCAAATTCATCAGGCCGACGGTAAGCC   <  1:6736965/34‑1
                                     CTGCTACGGCAAATTCATCAGGCCGACGGTCAGCC   <  1:16996425/35‑1
                                     CTGCTACGGCAAATTCATCAGGCCGACGGGCAGCC   >  1:336282/1‑35
                                      TGCTACGGCAAATTCATCAGGCCGACGGTCAGCCG  >  1:221937/1‑35
                                      TGCTACGGCAAATTCATCAGGCCGACGGTCAGCCG  >  1:8875143/1‑35
                                                                         
AGCGCCGCTGGTTGATCCCCATCCCCCTCCCCACCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/924307‑924268
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctgCTACGGCAAATTCATCAGGCCGACGGTCAGCCG  <  REL606/4366448‑4366416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.