New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1587129 =65 (0.630)7 (0.090) 3/36 NT 12.3% coding (244/435 nt) marR DNA‑binding transcriptional repressor of multiple antibiotic resistance
?REL606 2696580 = 51 (0.660)coding (481/2145 nt) nrdE ribonucleotide‑diphosphate reductase alpha subunit

Only 100 of 138 total aligned reads displayed.

ACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAA  >  REL606/1587095‑1587163
                                  |                                   
gctgctgcttaccgcagttgaggaatgttggggtg                                     <  1:4163973‑M1/1‑1 (MQ=255)
gctgctgcttacagcagttgaggaatgttggcgtg                                     >  1:17653050‑M1/35‑35 (MQ=255)
 ctgctgcttaccgcagttgaggaatgttggcgtgg                                    >  1:20361811‑M1/34‑35 (MQ=255)
 cTGACCCGTATGCTGGATCGCCTGGTGTGTAAAgg                                    <  1:4721863/35‑1 (MQ=255)
 cTGACCCGTATGCTGGATCGCCTGGTCTGTAAAgg                                    >  1:5530096/1‑35 (MQ=255)
 cTGACCCGTATGCTGGATCGCCTGGTCTGTAAAgg                                    >  1:153114/1‑35 (MQ=255)
  tgctgcttaccgcagttgaggaatgttggcgtGGc                                   <  1:8057963‑M1/3‑1 (MQ=255)
  tgctgcttaccgcagttgaggaatgttggcgtGGc                                   <  1:12938985‑M1/3‑1 (MQ=255)
  tgctgcttaccgcagttgaggaatgttggcgtGGc                                   <  1:8376519‑M1/3‑1 (MQ=255)
  tgctgcttaccgcagttgaggaatgttggcgtGGc                                   <  1:7426445‑M1/3‑1 (MQ=255)
  tgctgcttaacgcagttgaggaatgttggcgtGGc                                   >  1:20065600‑M1/33‑35 (MQ=255)
  tGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGc                                   <  1:10937339/35‑1 (MQ=255)
  tGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGc                                   <  1:15182562/35‑1 (MQ=255)
    ctgcttaccgcagttgaggaatgttggcgtGGCTg                                >  1:15906719‑M1/31‑35 (MQ=255)
    ctgcttaccgcagttgaggaatgttggcgtGGCTg                                <  1:3158460‑M1/5‑1 (MQ=255)
    ctgcttaccgcagttgaggaatgttggcgtGGCTg                                <  1:3964350‑M1/5‑1 (MQ=255)
    ctgcttaccgcagttgaggaatgttggcgtGGCTg                                >  1:4482718‑M1/31‑35 (MQ=255)
    ctgcttaccgcagttgaggaatgttggcgtGGCTg                                >  1:9511675‑M1/31‑35 (MQ=255)
    aCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTg                                <  1:8757172/35‑1 (MQ=255)
     tgcttaccgcagttgaggaatgttggcgtGGCTgg                               <  1:12441941‑M1/6‑1 (MQ=255)
     tgcttaccgcagttgaggaatgttggcgtGGCTgg                               <  1:14073691‑M1/6‑1 (MQ=255)
     ngcttaccgcagttgaggaatgttggcgtGGCTgg                               <  1:15732409‑M1/6‑1 (MQ=255)
     cccGTATGCTGGATCGCCTGGTCTGTAAAGGCTgg                               <  1:10210631/35‑1 (MQ=255)
     cccGTATGCTGGATCGCCTGGTCTGTAAAGGCTgg                               <  1:20409058/35‑1 (MQ=255)
     cccGTATGCTGGATCGCCTGGTCTGTAAAGGCTgg                               >  1:12792746/1‑35 (MQ=255)
     cccGTATGCTGGATCGCCTGGTCTGTAAAGGCTgg                               >  1:13285025/1‑35 (MQ=255)
      gcttaccgcagttgaggaatgttggcgtGGCTggg                              <  1:10736242‑M1/7‑1 (MQ=255)
       cttaccgcagttgaggaatgttggcgtGGCTGGGt                             <  1:471338‑M1/8‑1 (MQ=255)
       cGTATGCTGGATCGCCTGGTCTGTAAAGGCTgggg                             >  1:10731733/1‑34 (MQ=255)
       cGTATGCTGGATCGCCTGGTCTGTAAAGGCTgggg                             >  1:8889704/1‑34 (MQ=255)
        ttaccgcagttgaggaatgttggcgtGGCTGGGTg                            <  1:13846632‑M1/9‑1 (MQ=255)
        ttaccgcagttgaggaatgttggcgtGGCTGGGTg                            <  1:8977748‑M1/9‑1 (MQ=255)
         taccgcagttgaggaatgttggcgtGGCTGGGTgg                           <  1:2896823‑M1/10‑1 (MQ=255)
         tATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTgg                           <  1:5331499/35‑1 (MQ=255)
         tATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTgg                           <  1:19870973/35‑1 (MQ=255)
         tATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGgg                           >  1:19497231/1‑35 (MQ=255)
         tATGATGGATCGCCTGGTCTGTAAAGGCTGGGTgg                           <  1:19316365/35‑1 (MQ=255)
          accgcagttgaggaatgttggcgtGGCTGGGTGGa                          <  1:4554814‑M1/11‑1 (MQ=255)
          accgcagttgaggaatgttggcgtGGCTGGGTGGa                          <  1:15557753‑M1/11‑1 (MQ=255)
           tGCTGGATCGCCTGGTCTGTAAAGGCTGGGGggga                         >  1:1218568/1‑33 (MQ=38)
            gCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGaaa                        <  1:9405570/35‑1 (MQ=255)
            gCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGaaa                        <  1:6554631/35‑1 (MQ=255)
            cgcagttgaggaatgttggcgtGGCTGGGTGgaag                        <  1:3390100‑M1/13‑2 (MQ=255)
            cgcagttgaggaatgttggcgtGGCTGGGTGGaaa                        <  1:3051399‑M1/13‑1 (MQ=255)
            cgcagttgaggaatgttggcgtGGCTGGGCGgaag                        <  1:16941114‑M1/13‑2 (MQ=255)
             gcagttgaggaatgttggcgtGGCTGGCTGgaaac                       <  1:1708035‑M1/14‑2 (MQ=255)
             cTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAg                       <  1:781959/35‑1 (MQ=255)
             cTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAg                       >  1:1254200/1‑35 (MQ=255)
              tGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAgg                      <  1:17280403/35‑1 (MQ=255)
              tGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAgg                      >  1:13356377/1‑35 (MQ=255)
               ggATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGt                     >  1:3970009/1‑35 (MQ=255)
               ggATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGt                     <  1:17595285/35‑1 (MQ=255)
                gATCGCCTGGTCTGTAGAGGCTGGGGGGGAAAGGt                     >  1:11666420/1‑35 (MQ=19)
                gATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGtt                    <  1:6746086/35‑1 (MQ=255)
                gATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGtt                    >  1:17024538/1‑35 (MQ=255)
                 aTCGCCTGGTCTGTAAAGGCTGGGTGTAAAGGTTg                   >  1:20374386/1‑35 (MQ=255)
                   cGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGcc                 <  1:2111886/35‑1 (MQ=255)
                   cGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGcc                 <  1:1589129/35‑1 (MQ=255)
                    gCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCg                <  1:14401775/35‑1 (MQ=255)
                    gCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCg                <  1:11612964/35‑1 (MQ=255)
                    gCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCg                <  1:2156676/35‑1 (MQ=255)
                     ccTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGa               <  1:5053879/35‑1 (MQ=255)
                     ccTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGa               <  1:6272664/35‑1 (MQ=255)
                     ccTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGa               >  1:11146415/1‑35 (MQ=255)
                     ccTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGa               >  1:13920453/1‑35 (MQ=255)
                     ccTGGTATGTAAAGGCTGGGTGGAAAGGTTGCCGa               <  1:18641334/35‑1 (MQ=255)
                      cTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGaa              >  1:3189441/1‑35 (MQ=255)
                      cTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGaa              <  1:3639977/35‑1 (MQ=255)
                       tGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAAc             <  1:7703333/35‑1 (MQ=255)
                       tGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAAc             <  1:5293579/35‑1 (MQ=255)
                       tGGTCTGTAAAGGCTGGGTGAAAAGGTTGCCGAAc             <  1:12800095/35‑1 (MQ=255)
                        ggTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAAcc            <  1:5738895/35‑1 (MQ=255)
                        ggTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAAcc            >  1:7879310/1‑35 (MQ=255)
                         gTCTGTAAATGCTGGGTGGAAAGGTTGCCGAAccc           <  1:16608892/35‑1 (MQ=255)
                         gTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAAccc           >  1:7980985/1‑35 (MQ=255)
                          tCTGTAAAGGCTGGGTGGAAAGGTTGCCGAAcccc          >  1:2741904/1‑34 (MQ=255)
                          tCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCg          <  1:3283351/35‑1 (MQ=255)
                          tCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCg          <  1:18976579/35‑1 (MQ=255)
                          tCTGTAAAGGCTGGGTGGAAAGGTTGCAGAACCCg          <  1:20017583/35‑1 (MQ=255)
                           cTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGa         <  1:7939617/35‑1 (MQ=255)
                           cTGTAAAGGCTGGGTGGAAAGGGTGCCGAAccctg         >  1:8632505/1‑33 (MQ=38)
                             gTAAAGGCTGGGTGGAAAGGTTGCCGCACCCGAAt       >  1:1775952/1‑35 (MQ=255)
                             gTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAAt       <  1:6357435/35‑1 (MQ=255)
                             gTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAAt       <  1:10880691/35‑1 (MQ=255)
                             gTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAAt       <  1:1918498/35‑1 (MQ=255)
                             gTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAAt       >  1:1695255/1‑35 (MQ=255)
                             gTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAAt       <  1:1485230/35‑1 (MQ=255)
                              tAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATg      <  1:4559356/35‑1 (MQ=255)
                               aaaGGCTGGGTGGAAAGGTTGCCGAACCCGAATGa     >  1:9044227/1‑35 (MQ=255)
                               aaaGGCTGGGTGGAAAGGTTGCCGAACCCGAATGa     >  1:11255906/1‑35 (MQ=255)
                                aaGGCTGGGTGGAAAGGTTGCCGAACCCGAATGAc    <  1:10640750/35‑1 (MQ=255)
                                aaGGCTGGGTGGAAAGGTTGCCGAACCCGAATGAc    >  1:12762787/1‑35 (MQ=255)
                                aaGGCTGGGTGGAAAGGTTGCCGAACCCGAATGAc    >  1:13647912/1‑35 (MQ=255)
                                 aGGCTGGGTGGAAAGGTTGCCGAACCCGAATGaaa   <  1:19869554/35‑3 (MQ=255)
                                 aGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACa   >  1:12141929/1‑35 (MQ=255)
                                  GGCTGGGTGGAAAGGTTGCCGAACCCGAATGACaa  <  1:6382321‑M1/35‑1 (MQ=255)
                                  GGCTGGGTGGAAAGGTTGCCGAACCCGAATGACaa  <  1:2287841‑M1/35‑1 (MQ=255)
                                  GGCTGGGTGGAAAGGTTGCCGAACCCGAATGACaa  <  1:9065164‑M1/35‑1 (MQ=255)
                                  GGCTGGGTGGAAAGGTTGCCGAACCCGAATGACaa  >  1:10251789‑M1/1‑35 (MQ=255)
                                  GGCTGGGTGGAAAGGTTGCCGAACCCGAATGACaa  >  1:10052438‑M1/1‑35 (MQ=255)
                                  |                                   
ACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAA  >  REL606/1587095‑1587163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.