New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2288961 =52 (0.510)12 (0.140) 4/40 NT 19.0% coding (1909/3753 nt) yfaL adhesin
?REL606 = 3625456 59 (0.690)pseudogene (7/738 nt) yhjQ b3534; cell division protein (chromosome partitioning ATPase)

ACGTGATATTGAAATGCGCGCCGACGGTGAAGTGGCAG‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2288998‑2288961
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGGGGGCGGGG  <  REL606/3625456‑3625446
                                                 
ACGTGCTATTGAAATGCGCGCCGACGGTGAAGTGG                >  1:2183744/1‑35
ACGTGATATTTAAATGCGCGCCGACGGTGAAGTGG                >  1:12383689/1‑35
ACGTGATATTGAGATGCGCGCCGACGGTGAAGTGG                <  1:8416368/35‑1
ACGTGATATTGAAATGCGCGCCGACGGTGAAGTGG                >  1:13044034/1‑35
ACGTGATATTGAAATGCGCGCCGACGGTGAAGTGG                <  1:17866030/35‑1
 CGTGATATTTAAATGCGCGCCGACGGTGAAGTGGC               >  1:19547612/1‑35
 CGTGATATTGAAATGCGCGCCGACGGTGAAGTGGC               >  1:7118976/1‑35
  GTGATATTGAAATGCGCGCCGACGGTGAAGTGGCA              <  1:7361932/35‑1
  GTGATATTGAAATGCGCGCCGACGGTGAAGTGGCA              >  1:11154869/1‑35
  GTGATATTGAAATGCGCGCCGACGGTGAAGTGGCA              <  1:4014918/35‑1
   TGATATTGAAATGCGCGCCGACGGTGAAGTTGCAG             >  1:6768052/1‑35
   TGATATTGAAATGCGCGCCGACGGTGAAGTGGCAG             <  1:9486432/35‑1
   TGATATTGAAATGCGCGCCGACGGTGAAGTGGCAG             >  1:10679106/1‑35
    GATATTGAAATGCGCGCCGACGGTGAAGTGGCAGG            >  1:4516450/1‑35
     ATATTGAAATGCGCGCCGACGGTGAAGTGGCAGGG           >  1:15323672/1‑35
      TATTGAAATGCGCGCCGACGGTGAAGTGGCAGGGG          >  1:10809731/1‑35
      TATTGAAATGCGCGCCGACGGTGAAGTGGCAGGGG          >  1:6222435/1‑35
       ATTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGG         >  1:18378869/1‑35
       ATTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGG         >  1:20425662/1‑35
       ATTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGG         >  1:3709337/1‑35
        TTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGGG        >  1:8634771/1‑35
        TTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGGG        >  1:8417468/1‑35
        TTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGGG        >  1:13638740/1‑35
        TTGAAATGCGCGCCGACGGTGAAGTGGCAGGGGGG        >  1:15449872/1‑35
         TGAAATGCGCGCCGACGGTGAAGTGGCAGGGGGGG       >  1:19346849/1‑35
         TGAAATGCGCGCCGACGGTGAAGTGGCAGGGGGGG       >  1:10303060/1‑35
          GAAATGCGCGCCGACGGTGAAGTGGCAGGGGGGGg      >  1:12664443/1‑34
           AAATGCGCGCCGACGGTGAAGTGGCAGGGGGGGgg     >  1:3463329/1‑33
           AAATGCGCGCCGACGGTGAAGTGGCAGGGGGGGgg     >  1:12921888/1‑33
            AATGCGCGCCGACGGTGAAGTGGCAGGGGGGGCGG    >  1:6275178/1‑35
             ATGCGCGCCGACGGTGAAGTGGCAGGGGGGGGGGG   >  1:3450120/1‑35
             ATGCGCGCCGACGGTGAAGTGGCAGGGGGGGGGGG   >  1:10836935/1‑35
             ATGCGCGCCGACGGTGAAGTGGCAGGGGGGGGGGG   >  1:7168522/1‑35
             ATGCGCGCCGACGGTGAAGTGGCAGGGGGGGGGGG   >  1:19013933/1‑35
              TGCGCGCCGACGGTGAAGTGGCAGGGGGGGGGGGG  >  1:2731959/1‑35
              TGCGCGCCGACGGTGAAGTGGCAGGGGGGGGGGGG  >  1:6955700/1‑35
                                                 
ACGTGATATTGAAATGCGCGCCGACGGTGAAGTGGCAG‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2288998‑2288961
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGGGGGCGGGG  <  REL606/3625456‑3625446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.