Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,420,709 | +GA :: IS3 (+) +4 bp | 14.6% | intergenic (+21/‑9) | ynaK → / → ECB_01341 | conserved protein/hypothetical protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1420709 = | 60 (0.780) | 11 (0.120) | 10/44 | NT | 13.0% | intergenic (+21/‑12) | ynaK/ECB_01341 | conserved protein/hypothetical protein |
? | REL606 | = 1443893 | NA (NA) | noncoding (1255/1255 nt) | IS3 | repeat region | |||||
* | ? | REL606 | = 1420712 | 69 (0.810) | 11 (0.110) | 11/46 | NT | 12.2% | intergenic (+24/‑9) | ynaK/ECB_01341 | conserved protein/hypothetical protein |
? | REL606 | 1607918 = | NA (NA) | coding (15/1320 nt) | ECB_01510 | putative tail component of prophage |
Only 100 of 138 total aligned reads displayed.
AGGCCTGTGTCCATATTACGTGGGTAGGATCAATCTCGGGCTGGACGTGCTGGATGTGGTTAACCT > REL606/1443862‑1443927 | aGGCCTGTGTCCATATTACGTGGGTAGGATCAAtc < 1:17591161/35‑1 (MQ=32) aGGCCTGTGTCCATATTACGTGGGTAGGATCAAtc > 1:18239303/1‑35 (MQ=32) aGGCCTGTGTCCATATTACGTGGGTAGGATCAAtc < 1:10600630/35‑1 (MQ=32) nnccTGNGTCCATATTACGTGGGTAGGATCAAtcn < 1:19468137/33‑1 (MQ=255) ggCCTGTGTCCATATTACGTGGGTAGGATCAAtct < 1:17915480/35‑1 (MQ=35) ggCCTGTGTCCATATTACGTGGGTAGGATCAAtct > 1:18576722/1‑35 (MQ=35) ggCCTGTGTCCATATTACGTGGGTAGGATCAAtct > 1:11988478/1‑35 (MQ=35) ggCCTGTGTCCATATTACGTGGGTAGGATCAAtct > 1:9249800/1‑35 (MQ=35) ggCCTGTGTCCATATTACGTGGGTAGGATCAAtct > 1:16838799/1‑35 (MQ=35) ggCCTGTGTCCATATTACGTGGGTAGGATCAAtct < 1:19994543/35‑1 (MQ=35) ggCCTGTGTCCATATTACGTGGGTAGGATCAAtct > 1:16837490/1‑35 (MQ=35) gCCTGTGTCCATATTACGTGGGTAGGATCAAtctc > 1:2473481/1‑35 (MQ=38) ccTGTGTCCATATTACGTGGGTAGGATCAATCTCg < 1:9455450/35‑1 (MQ=40) ccTGTGTCCATATTACGTGGGTAGGATCAATCTCg > 1:10896264/1‑35 (MQ=40) ccTGTGTCCATATTACGTGGGTAGGATCAATCTCg < 1:3144205/35‑1 (MQ=40) cTGTGTCCATATTACGTGGGTAGGATCAATCTCgg < 1:9247396/35‑1 (MQ=255) cTGTGTCCATATTACGTGGGTAGGATCAATCTCgg > 1:8043761/1‑35 (MQ=255) cTGTGTCCATATTACGTGGGTAGGATCAATCTCgg > 1:4824284/1‑35 (MQ=255) cTGTGTCCATATGACGTGGGTAGGATCAATCTCgg < 1:7125043/35‑1 (MQ=255) tttgtCCATATTACGTGGGTAGGATCAATCTCggg > 1:13152507/3‑35 (MQ=255) tgtgTCCATATTACGTGGGTAGGATCAATCTCggg < 1:1753630/35‑1 (MQ=255) tgtgTCCATATTACGTGGGTAGGATCAATCTCggg < 1:16478141/35‑1 (MQ=255) tgtgTCCATATTACGTGGGTAGGATCAATCTCggg > 1:11833125/1‑35 (MQ=255) tgtgTCCATATTACGTGGGTAGGATCAATCTCggg < 1:20175076/35‑1 (MQ=255) tgtgTCCATATCACGTGGGTAGGATCAATCTCggg < 1:7473228/35‑1 (MQ=255) gtgtCCATATTACGTGGGTAGGATCAATCTCGGGc < 1:6649322/35‑1 (MQ=255) gtgtCCATATTACGTGGGTAGGATCAATCTCGGGc < 1:835076/35‑1 (MQ=255) gtgtCCATATTACGTGGGTAGGATCAATCTCGGGc > 1:14879779/1‑35 (MQ=255) gtgtCCATATTACGTGGGTAGGATCAATCTCGGGc > 1:6328617/1‑35 (MQ=255) tgtCCATATTACGTGGGTAGGATCAATCTCTGGCt > 1:5408798/1‑35 (MQ=255) tgtCCATATTACGTGGGTAGGATCAATCTCGGGCt < 1:19747283/35‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCAATCTCGGGCt > 1:10520497/1‑35 (MQ=255) tgtCCATATTACGTGGGTAGGATCAATCTCGGGCt < 1:6889593/35‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCAATCTCGGGCt > 1:17757923/1‑35 (MQ=255) tgtCCATATTACGTGGGTAGGATCAATCTCGGGCt > 1:13776481/1‑35 (MQ=255) gtCCATATTACGTGGGTAGGATCAATCTCTGGCTg > 1:3859125/1‑35 (MQ=255) tCCATATTACGTGGGTAGGATCAATCTCGGGCTgg > 1:17084239/1‑35 (MQ=255) tCCATATTACGTGGGTAGGATCAATCTCGGGCTgg < 1:12879745/35‑1 (MQ=255) tCCATATTACGTGGGTAGGATCAATCTCGGGCTgg < 1:4754160/35‑1 (MQ=255) ccATATTACGTGGGTAGGATCAATCTCGGGCTGGa > 1:20004894/1‑35 (MQ=255) ccATATTACGTGGGTAGGATCAATCTCGGGCTGGa < 1:12463821/35‑1 (MQ=255) cATATTACGTGGGTAGGATCAATCTCGGGCTGGAc > 1:9355968/1‑35 (MQ=255) cATATTACGTGGGTAGGATCAATCTCGGGCTGGAc < 1:3924863/35‑1 (MQ=255) cATATTACGTGGGTAGGATCAATCTCGGGCTGGAc > 1:13852241/1‑35 (MQ=255) cATATTACGTGGGTAGGATCAATCTCGGGCTGGAc < 1:15294822/35‑1 (MQ=255) cATATTACGTGGGTAGGATCAATCTCGGGCTGGAc > 1:16415078/1‑35 (MQ=255) ntatTACGTGGGTAGGATCAATCTCGGGCTGGACg > 1:8511458/2‑35 (MQ=255) atatTACGTGGGTAGGATCAATCTCGGGCTGGACg > 1:4323320/1‑35 (MQ=255) atatTACGTGGGTAGGATCAATCTCGGGCTGGACg > 1:14191643/1‑35 (MQ=255) atatTACGTGGGTAGGATCAATCTCGGGCTGGACg < 1:17207555/35‑1 (MQ=255) atatTACGTGGGTAGGATCAATCTCGGGCTGGACg < 1:14614165/35‑1 (MQ=255) tatTACGTGGGTAGGATCAATCTCGGGCTGGACGt > 1:946508/1‑35 (MQ=255) tatTACGTGGGTAGGATCAATCTCGGGCTGGACGt < 1:4890425/35‑1 (MQ=255) tatTACGTGGGTAGGATCAATCTCGGGCTGGACGt < 1:19699521/35‑1 (MQ=255) tatTACGTGGGTAGGATCAATCTCGGGCTGGACGt < 1:12384467/35‑1 (MQ=255) atTACGTGGGTAGGATCAATCTCGGGCTGGACggg > 1:13693369/1‑33 (MQ=255) atTACGTGGGTAGGATCAATCTCGGGCTGGACggg > 1:19536590/1‑33 (MQ=255) atTACGTGGGTAGGATCAATCTCGGGCTGGACGTg < 1:1956721/35‑1 (MQ=255) atTACGTGGGTAGGATCAATCTCGGGCTGGACGTg < 1:12830803/35‑1 (MQ=255) atTACGTGGGTAGGATCAATCTCGGGCTGGACGTg < 1:16855609/35‑1 (MQ=255) atTACGTGGGTAAGATCAATCTCGGGCTGGACGTg < 1:18461488/35‑1 (MQ=255) ttgcGTGAGTAGGATCAATCTCGGGCTGGACGTGc < 1:5612892/32‑1 (MQ=37) tACGTGGGTAGGATCAATCTCGGGCTGGACGTGCt > 1:10272710/1‑35 (MQ=255) aCGTGGGTAGGATCAATCTCGGGCTGGACGTGCTg < 1:18026182/35‑1 (MQ=255) aCGTGGGTAGGATCAATCTCGGGCTGGACGTGCTg < 1:1794711/35‑1 (MQ=255) aCGTGGGTAGGATCAATCTCGGGCTGGACGGGCTg > 1:10585167/1‑35 (MQ=255) cGTGGGTAGGATCAATCTCGGGCTGGACGTGCTgg < 1:3413481/35‑1 (MQ=255) tGGGTAGGATCAATCTCGGGCTGGACGTGCTggct > 1:15141814/1‑33 (MQ=255) tGGGTAGGATCAATCTCGGGCTGGACGTGCTGGAt < 1:2869184/35‑1 (MQ=255) tGGGTAGGATCAATCTCGGGCTGGACGTGCTGGAt > 1:6630698/1‑35 (MQ=255) gggTAGGATCAATCTCGGGCTGGACGTGCTGGAtg > 1:4153358/1‑35 (MQ=255) ggTAGGATCAATCTCGGGCTGGACGTGGCGGAtag > 1:679655/1‑33 (MQ=25) ggTAGGATCAATCTCGGGCTGGACGTGCTGGAtgg > 1:6191855/1‑34 (MQ=255) ggTAGGATCAATCTCGGGCTGGACGTGCTGGAtgg > 1:10718686/1‑34 (MQ=255) gTAGGATCAATCTCGGGCTGGACGTGCTGGAtgtg > 1:9800120/1‑35 (MQ=255) gTAGGATCAATCTCGGGCTGGACGTGCTGGAtgtg < 1:19823962/35‑1 (MQ=255) gTAGGATCAATCTCGGGCTGGACGTGCTGGAtgtg > 1:16532044/1‑35 (MQ=255) gTAGGATCAATCTCGGGCTGGACGTGCTGGAtggg > 1:11614773/1‑33 (MQ=255) tAGGATCAATCTCGGGCTGGACGTGCTGGATGTgg > 1:8321965/1‑35 (MQ=255) tAGGATCAATCTCGGGCTGGACGTGCTGGATGGgg > 1:11707597/1‑35 (MQ=255) aGGATCAATCTCGGGCTGGACGTGCTGGATGTGGt < 1:11967829/35‑1 (MQ=255) aGGATCAATCTCGGGCTGGACGTGCTGGATGTGGt < 1:18571648/35‑1 (MQ=255) aGGATCAATCTCGGGCTGGACGTGCTGGATGTGGt < 1:18421294/35‑1 (MQ=255) ggATCAATCTCGGGCTGGACGTGCTGGATGTGGtt < 1:18066338/35‑1 (MQ=255) ggATCAATCTCGGGCTGGACGTGCTGGATGTGGtt < 1:7646567/35‑1 (MQ=255) gATCAATCTCGGGCTGGACGTGCTGGATGTGGTTa < 1:1021462/35‑1 (MQ=255) gATCAATCTCGGGCTGGACGTGCTGGATGTGGTTa < 1:4643439/35‑1 (MQ=255) gATCAATCTCGGGCTGGACGTGCTGGATGGGGttt > 1:6868297/1‑34 (MQ=255) gATCAATCTCGGGCTGGACGTGCTGGATGGGGGTa > 1:10173737/1‑35 (MQ=37) aTCAATCTCGGGCTGGACGTGCTGGATGTGGTTaa < 1:14296505/35‑1 (MQ=255) aTCAATCTCGGGCTGGACGTGCTGGATGTGGTTaa < 1:4021836/35‑1 (MQ=255) aTCAATCTCGGGCTGGACGTGCTGGATGGGGTTaa > 1:8208636/1‑35 (MQ=255) aTCAATCTCGGGCTGGACGTGCTGGATGGGGGTaa > 1:5167586/1‑35 (MQ=37) tCAATCTCGGGCTGGACGTGCTGGATGTGGTTAAc < 1:4810966/35‑1 (MQ=255) tCAATCTCGGGCTGGACGTGCTGGATGTGGGTaaa > 1:9646521/1‑34 (MQ=255) cAATCTCGGGCTGGACGTGCTGGATGTGGTTAAcc < 1:5533750/35‑1 (MQ=255) aaTCTCGGGCTGGACGTGCTGGATGTGGTTAACCt < 1:17906483/35‑1 (MQ=255) aaTCTCGGGCTGGACGTGCTGGATGTGGTTAACCt < 1:14215035/35‑1 (MQ=255) aaTCTCGGGCTGGACGTGCTGGATGTGGTTAACCt < 1:12512319/35‑1 (MQ=255) aaTCTCGGGCTGGACGTGCTGGATGTGGTTAACCt < 1:4894308/35‑1 (MQ=255) | AGGCCTGTGTCCATATTACGTGGGTAGGATCAATCTCGGGCTGGACGTGCTGGATGTGGTTAACCT > REL606/1443862‑1443927 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |