New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 76423 =43 (0.420)4 (0.050) 3/36 NT 7.3% coding (903/1611 nt) thiP thiamin ABC transporter membrane protein
?REL606 = 3891004 69 (0.900)coding (451/1497 nt) yieN fused predicted transcriptional regulator: sigma54 activator protein/conserved protein

Only 100 of 122 total aligned reads displayed.

CTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCGGGATTTTTTCTACGTGTGCA  >  REL606/3890970‑3891038
                                  |                                  
ctgTCTGCTTCCGGCAGCTCGTTGGAGGCCGccac                                    >  1:7214019/1‑35 (MQ=255)
ctgTCTGCTTCCGGCAGCTCGTTGGAGGCCGccac                                    >  1:7324537/1‑35 (MQ=255)
 tGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACc                                   <  1:16165298‑M2/35‑2 (MQ=255)
 tGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACc                                   >  1:13734953‑M2/1‑34 (MQ=255)
  gTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACca                                  >  1:8736859‑M2/1‑33 (MQ=255)
  gTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACca                                  >  1:13135895‑M2/1‑33 (MQ=255)
   tCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACcag                                 >  1:15556762‑M2/1‑32 (MQ=255)
    cTGCTTCCGGCATCTCGTTGGAGGCCGCCACcagc                                <  1:274902‑M2/35‑5 (MQ=255)
    cTGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagc                                <  1:8258067‑M2/35‑5 (MQ=255)
    cTGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagc                                >  1:9009567‑M2/1‑31 (MQ=255)
    cTGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagc                                <  1:14474871‑M2/35‑5 (MQ=255)
    cTGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagc                                <  1:14503025‑M2/35‑5 (MQ=255)
    cTGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagc                                <  1:15326957‑M2/35‑5 (MQ=255)
     tGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagca                               <  1:13071199‑M2/35‑6 (MQ=255)
     tGCTTCCGGCAGCTCGTTGGAGGCCGCCACcagca                               >  1:17392045‑M2/1‑30 (MQ=255)
      tctTCGGGCAGCTCGTTGGAGGCCGCCACcagcag                              >  1:950249‑M2/2‑29 (MQ=255)
      gCTTCCGGCAGCTCGTTGGAGGCCGCCCCcagcag                              <  1:19045485‑M2/35‑7 (MQ=255)
       cTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAgg                             >  1:8242581/1‑35 (MQ=255)
        ttCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGgc                            <  1:1214184/35‑1 (MQ=255)
        ttCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGgc                            <  1:11719663/35‑1 (MQ=255)
         tCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGgcg                           >  1:11230449/1‑35 (MQ=255)
         tCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGgcg                           >  1:2240573/1‑35 (MQ=255)
          ccGGCAGCTCGTTGGAGGCCGCCACCAGCAGgggc                          >  1:15826597/1‑35 (MQ=255)
            ggCAGCTCGTTGGAGGCCGCCACCAGCAGgcgcgt                        >  1:2795983/1‑33 (MQ=255)
            ggCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCAt                        <  1:15438054/35‑1 (MQ=255)
            ggCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCAt                        <  1:13858592/35‑1 (MQ=255)
             gCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATc                       >  1:20379815/1‑35 (MQ=255)
             gCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATc                       >  1:14687704/1‑35 (MQ=255)
             gCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATc                       >  1:5759587/1‑35 (MQ=255)
             gCAGCTCGTTGGAGGCCGCCACCAGCAGGCGAATc                       >  1:5382182/1‑35 (MQ=255)
              cAGCTCGTTGGAGGCCGCCACCAGCATGCGCATCg                      >  1:17090006/1‑35 (MQ=255)
              cAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCg                      >  1:5693137/1‑35 (MQ=255)
              cAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCg                      >  1:4110906/1‑35 (MQ=255)
              cAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCg                      <  1:5965434/35‑1 (MQ=255)
              cAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCg                      >  1:6820058/1‑35 (MQ=255)
              cAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCg                      >  1:8471419/1‑35 (MQ=255)
              cAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCg                      >  1:12093679/1‑35 (MQ=255)
               aGCTCGTTGGAGTCCGCCACCAGCAGGCGCATCgg                     >  1:5908694/1‑35 (MQ=255)
               aGCTCGTTGGAGGCTGCCACCAGCAGGCGCATCgg                     <  1:2927210/35‑1 (MQ=255)
               aGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCgg                     >  1:5320931/1‑35 (MQ=255)
                gCTGGTTGGAGGCCGCCACCAGCAGGCGCATCggg                    <  1:17589780/35‑1 (MQ=255)
                gCTCGTTGGAGGCCGCCACCAGCGGGCGGATCggg                    >  1:5157789/1‑35 (MQ=37)
                gCTCGTTGGAGGCCGCCACCAGCAGGCGCATCggg                    <  1:18767172/35‑1 (MQ=255)
                gCTCGTTGGAGGCCGCCACCAGCAGGCGCATCggg                    >  1:6744131/1‑35 (MQ=255)
                gCTCGTTGGAGGCCGACACCAGCAGGCGCATCggg                    <  1:15341132/35‑1 (MQ=255)
                gCTCGTGGGAGGCCGCCAACAGCAGGCGCATCggg                    <  1:10703678/35‑1 (MQ=37)
                  tggTTGGGGGCCGCCACCAGCAGGCGCATCGGGAt                  <  1:6897505/33‑1 (MQ=37)
                   cGTTGGAGGCCGCCACCAGCAGGCGCATCGGGGtt                 >  1:12686050/1‑35 (MQ=255)
                   cGTTGGAGGCCGCCACCAGCAGGCGCATCGGGAtt                 >  1:8590944/1‑35 (MQ=255)
                   cGTGGGAGGCCGCCACCAGCAGGCGCATCGGGAtt                 <  1:17943627/35‑1 (MQ=255)
                   cGTGGGAGGCCGCCACCAGCAGGCGCATCGGGAtt                 <  1:6467840/35‑1 (MQ=255)
                    gTTGGAGGCCGCCACCAGCAGGCGCATCGGGAttt                <  1:12783655/35‑1 (MQ=255)
                      tGGAGGCCGCCACCAGCAGGCGCATCGGGAttttt              <  1:9496292/35‑1 (MQ=255)
                      tGGAGGCCGCCACCAGCAGGCGCATCGGGAttttt              >  1:2041071/1‑35 (MQ=255)
                      tGGAGGCCGCCACCAGCAGGCGCATCGGGAttttt              <  1:14203954/35‑1 (MQ=255)
                      gggAGCCCGCCACCAGCAGGCGCATCGGGAttttt              <  1:5187463/34‑1 (MQ=255)
                       gggggCCGCCACCAGCAGGCGCATCGGGAtttttt             <  1:11195453/32‑1 (MQ=255)
                       gggggCCGCCAACAGCAGGCGCATCGGGAtttttt             <  1:14399349/32‑1 (MQ=37)
                       ggAGGCCGCCACCAGCAGGCGCATCGGGAtttttt             <  1:20365281/35‑1 (MQ=255)
                       ggAGCCCGCCACCAGCAGGCGCATCGGGAtttttt             <  1:4172791/35‑1 (MQ=255)
                        ggggCCGCCACCAGCAGGCGCATCGGGATTTTTTc            <  1:76617/33‑1 (MQ=255)
                        gAGGCCGCCACCAGCAGGCGCATCGGGATTTTTTc            >  1:7802160/1‑35 (MQ=255)
                        gAGGCCGCCACCAGCAGGCGCATCGGGATTTTTTc            >  1:2903050/1‑35 (MQ=255)
                        gAGGCCGCCACCAGCAGGCGCATCGGGATTTTTTc            <  1:11889859/35‑1 (MQ=255)
                         agcccgccACCAGCAGGCGCATCGGGATTTTTTCt           <  1:2693994/32‑1 (MQ=255)
                         aGGCCGCCACCAGCAGGCGCATCGGGATTTTTTCt           <  1:2086597/35‑1 (MQ=255)
                         aGGCCGCCACCAGCAGGCACATCGGGATTTTTTCt           >  1:16956447/1‑35 (MQ=255)
                          ggCCGCCACCAGCAGGCGCATCGGGATATTTTCTa          >  1:8481048/1‑35 (MQ=255)
                           gccgccACcagcagcagcgccagcacaattaacac         >  1:8725569‑M2/1‑8 (MQ=255)
                           gccgccACCAGTAGGCGCATCGGGATTTTTTCTAc         <  1:19565201/35‑1 (MQ=255)
                           cccgccACCAGCAGGCGCATCGGGATTTTTTCTAc         <  1:20358104/34‑1 (MQ=255)
                            ccgccACCAGCAGGCGCATCGGGATTTTTTCTACg        >  1:2929930/1‑35 (MQ=255)
                            ccgccACCAGCAGGCGCATCGGGATTTTTTCTACg        >  1:1877820/1‑35 (MQ=255)
                            ccgccACCAGCAGGCGCATCGGGATTTTTTCTACg        <  1:2663300/35‑1 (MQ=255)
                             cgccACCAGCAGGCGCATCGGGATTTTTTCTACgt       <  1:18776155/35‑1 (MQ=255)
                             cgccACCAGCAGGCGCATCGGGATTTTTTCTACgt       <  1:7256082/35‑1 (MQ=255)
                             cgccACCAGCAGGCGCATCGGGATTTTTTCTACgt       >  1:18842451/1‑35 (MQ=255)
                             cgccACCAGCAGGCGCATCGGGATTTTTTCTACgt       <  1:5064199/35‑1 (MQ=255)
                             cgccACCAGCAGGCGCATCGGGATTTTTTCTACgt       <  1:6089621/35‑1 (MQ=255)
                             cgacACcagcagcagcgccagcacaattaacaccg       >  1:15622777‑M2/1‑6 (MQ=255)
                              gccACCAGCAGGCGCATCGGGATTTTTTCTACgtg      >  1:19453868/1‑35 (MQ=255)
                              gccACCAGCAGGCGCATCGGGATTTTTTCTACgtg      <  1:18366934/35‑1 (MQ=255)
                              gccACCAGCAGGCGCATCGGGATTTTTTCTACgtg      <  1:2952821/35‑1 (MQ=255)
                              agcaccagcagcagcgccagcacaattaacaccgt      >  1:9234295‑M2/3‑5 (MQ=255)
                              agaaccagcagcagcgccagcacaattaacaccgt      >  1:5382211‑M2/4‑5 (MQ=255)
                              acaaccagcagcagcgccagcacaattaacaccgt      >  1:17756461‑M2/4‑5 (MQ=255)
                               gcaccagcagcagcgccagcacaattaacaccgtg     >  1:16563706‑M2/2‑4 (MQ=255)
                                caccagcagcagcgccagcacaattaacaccgtgt    >  1:5268836‑M2/1‑3 (MQ=255)
                                caccaGCAGGCGCATCGGGATTTTTTCTACGtgtg    <  1:2885802/35‑1 (MQ=255)
                                caccaGCAGGCGCATCGGGATTTTTTCTACGtgtg    <  1:3176616/35‑1 (MQ=255)
                                caccaGCAGGCGCATCGGGATTTTTTCTACGtgtg    >  1:536570/1‑35 (MQ=255)
                                aacaagcagcagcgccagcacaattaacaccgtgt    >  1:5034668‑M2/2‑3 (MQ=255)
                                 accaGCAGGCGCATCGGGATTTTTTCTACGTGTGc   <  1:7830579/35‑1 (MQ=255)
                                 accaGCAGGCGCATCGGGATTTTTTCTACGTGTGc   <  1:12719864/35‑1 (MQ=255)
                                 accaGCAGGCGCATCGGGATTTTTTCTACGTGTGc   <  1:1542496/35‑1 (MQ=255)
                                  ccggcagcagcgccagcacaattaacaccgtgtcg  >  1:733036‑M2/1‑1 (MQ=255)
                                  ccagcagcagcgccagcacaattaacaccgtgtcg  >  1:18123404‑M2/1‑1 (MQ=255)
                                  ccaGCAGGCGCATCGGGATTTTTTCTACGTGTGCa  >  1:18751351/1‑35 (MQ=255)
                                  ccaGCAGGCGCATCGGGATTTTTTCTACGTGTGCa  <  1:18904004/35‑1 (MQ=255)
                                  ccaGCAGGCGCATCGGGATTTTTTCTACGTGTGCa  >  1:16723889/1‑35 (MQ=255)
                                  |                                  
CTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGGCGCATCGGGATTTTTTCTACGTGTGCA  >  REL606/3890970‑3891038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.