New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 5 (0.050) | 5/46 | NT | 5.3% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | = 4415712 | 90 (0.910) | coding (850/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
TTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGT > REL606/3894967‑3895030 | ttAACTGTCCAACTTTTTGGGGTCAGTACAggccg < 1:18484193‑M2/35‑6 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTACAGACgta > 1:5533639/1‑33 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTACACACgta > 1:814741/1‑33 (MQ=1) aaCTGTCCAACTTTTTGGGGTCAGTACAaaccgag < 1:8112808‑M2/35‑8 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACAGACgtag > 1:4748640/1‑32 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTACAgaccgata > 1:11353601‑M2/1‑27 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTACAgaccgata > 1:3924763‑M2/1‑27 (MQ=255) gTCCAACTTTTTGGGGTCAGTACAgaccgatattt > 1:1041574‑M2/1‑24 (MQ=255) cTTTTTGGGGTCAGTACAgaccgatatttctatca < 1:10601260‑M2/35‑18 (MQ=255) cTTTTTGGGGTCAGTACAgaccgatatttctatca > 1:10662110‑M2/1‑18 (MQ=255) ttGGGGTCAGTACAgaccgatatttctatcaaccg > 1:19164457‑M2/1‑14 (MQ=255) ggggTCAGTACAgaccgatatttctatcaaccgag < 1:19993431‑M2/35‑24 (MQ=255) gggTCAGTACAgaccgatatttctatcaaccgagg > 1:996720‑M2/1‑11 (MQ=255) gggTCAGTACAgaccgatatttctatcaaccgagg > 1:336443‑M2/1‑11 (MQ=255) ggTCAGTACAgaccgatatttctatcaaccgaggc > 1:8002557‑M2/1‑10 (MQ=255) gTCAGTACAgaccgatatttctatcaaccgaggcc < 1:10982498‑M2/35‑27 (MQ=255) gTACAgaccgatatttctatcaaccgaggccaacg < 1:6579525‑M2/35‑31 (MQ=255) aCAgaccgatatttctatcaaccgaggccaacgaa > 1:18084192‑M2/1‑3 (MQ=255) cAgaccgatatttctatcaaccgaggccaacgaat > 1:10525253‑M2/1‑2 (MQ=255) agaccgatatttctatcaaccgaggccaacgaatg < 1:20361136‑M2/35‑35 (MQ=255) | TTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGT > REL606/3894967‑3895030 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |