New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 285065 = | 85 (0.830) | 8 (0.120) | 3/30 | NT | 14.3% | coding (529/4257 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
? | REL606 | = 3978905 | 43 (0.670) | coding (1426/2262 nt) | metE | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine methyltransferase |
Only 100 of 156 total aligned reads displayed.
TATCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGGACTGGATGTGCTGGTACATGGCGAGGCCGAGCG > REL606/3978871‑3978939 | tatCAAGCAGGCCATTGTTGAGCAGGAACGTTTgg > 1:5576430/1‑35 (MQ=255) tatCAAGCAGGCCATTGTTGAGCAGGAACGTTTgg > 1:6587046/1‑35 (MQ=255) aTCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGg > 1:15388579‑M2/1‑34 (MQ=255) aTCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGg < 1:18584824‑M2/35‑2 (MQ=255) aTCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGg > 1:1961860‑M2/1‑34 (MQ=255) aTCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGg < 1:3368843‑M2/35‑2 (MQ=255) aTCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGg > 1:7067580‑M2/1‑34 (MQ=255) aTCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGg < 1:10119985‑M2/35‑2 (MQ=255) tCAAGCAGGCCATTGTTGAGCAGGAACGTTTTGga < 1:4914183‑M2/35‑3 (MQ=255) tCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGga < 1:11206123‑M2/35‑3 (MQ=255) cAAGCAGGCCATTGTTGAGCAGGAACGTTTGTgac < 1:1823478‑M2/35‑4 (MQ=255) cAAGCAGGCCATTGTTGAGCAGGAACGTTTGTgac < 1:8953542‑M2/35‑4 (MQ=255) cAAGCAGGCCATTGTTGAGCAGGAACGTTTGGgac > 1:1456399‑M2/1‑32 (MQ=255) cAAGCAGGCCATTGTTGAGCAGGAACGTTTGGgac > 1:1434493‑M2/1‑32 (MQ=255) aaGCAGGCCATTGTTGAGCAGGAACGTTTGGgact < 1:16180956‑M2/35‑5 (MQ=255) aaGCAGGCCATTGTTGAGCAGGAACGTTTGGgact > 1:8254607‑M2/1‑31 (MQ=255) aaGCAGGCCATTGTTGAGCAGGAACGTTTGGgact > 1:7039548‑M2/1‑31 (MQ=255) aGCAGGCCATTGTTGAGCAGGAACGTTTGGgactg > 1:12561451‑M2/1‑30 (MQ=255) aGCAGGCCATTGTTGAGCAGGAACGTTTGGgactg > 1:6681755‑M2/1‑30 (MQ=255) aGCAGGCCATTGTTGAGCAGGAACGTTTGGgactg > 1:9113318‑M2/1‑30 (MQ=255) gCAGGCCATTGTTGAGCAGGAACGTTTGGgactgg > 1:17804736‑M2/1‑29 (MQ=255) gCAGGCCATTGTTGAGCAGGAACGTTTGGgactgg > 1:1982808‑M2/1‑29 (MQ=255) cAGGCCATTGTTGAGCAGGAACGTTTGGgactgga < 1:17683769‑M2/35‑8 (MQ=255) cAGGCCATTGTTGAGCAGGAACGTTTGGgactgga < 1:748071‑M2/35‑8 (MQ=255) cAGGCCATTGTTGAGCAGGAACGTTTGGgactgga < 1:3187638‑M2/35‑8 (MQ=255) cAGGCCATTGTTGAGCAGGAACGTTTGGgactgga < 1:7616638‑M2/35‑8 (MQ=255) cAGGCCATTGTTGAGCAGGAACGTTTGGgactgga < 1:12631448‑M2/35‑8 (MQ=255) cAGGCCATTGTTGAGCAGGAACGTTTGGgactgag < 1:14735309‑M2/35‑8 (MQ=255) aGGCCATTGTTGAGCAGGAACGTTTGGgactggat > 1:19606032‑M2/1‑27 (MQ=255) aGGCCATTGTTGAGCAGGAACGTTTGGgactggat < 1:377875‑M2/35‑9 (MQ=255) aGGCCATTGTTGAGCAGGAACGTTTGGgactggat < 1:16442134‑M2/35‑9 (MQ=255) aGGCCATTGTTGAGCAGGAACGTTTGGgactggat < 1:16164590‑M2/35‑9 (MQ=255) aGGCCATTGTTGAGCAGGAACGTTTGGgactggat < 1:7233755‑M2/35‑9 (MQ=255) aGGCCATTGTTGAGCAGGAACGTTTGGgactggat > 1:13125035‑M2/1‑27 (MQ=255) aGGCCATTGTTGAGCAGGAACGTTTGGgactggat > 1:11592245‑M2/1‑27 (MQ=255) ggCCATTGTTGAGCAGGAACGTTTTGgactggatg < 1:6152178‑M2/35‑10 (MQ=255) ggCCATTGTTGAGCAGGAACGTTTGGgactggatg < 1:661861‑M2/35‑10 (MQ=255) ggCCATTGTTGAGCAGGAACGTTTGGgactggatg > 1:12123272‑M2/1‑26 (MQ=255) ggCCATTGTTGAGCAGGAACGTTTGGgactggatg < 1:7588119‑M2/35‑10 (MQ=255) ggCAATTGTTGAGCAGGAACGTTTGGgactggatg > 1:10261748‑M2/1‑26 (MQ=255) gCCATTGTTGAGCAGGAACGTTTGGgactggatgg < 1:15332343‑M2/35‑11 (MQ=255) gCCATTGTTGAGCAGGAACGTTTGGGACTGGAtgt < 1:8603036/35‑1 (MQ=255) ccATTGTTGAGCAGGAACGTTTGGGACTGGAtgtg < 1:9822218/35‑1 (MQ=255) cATTGTTGAGCAGGAACGTTTGGgactggatgggg < 1:2266948‑M2/35‑13 (MQ=255) cATTGTTGAGCAGGAACGTTTGGGACTGTATGTGc > 1:8611957/1‑35 (MQ=255) aTTGTTGAGCAGGAACGTTTGGgactggatggggt < 1:14519705‑M2/35‑14 (MQ=255) aTTGTTGAGCAGGAACGTTTGGgactggatggggg < 1:16410426‑M2/35‑14 (MQ=255) aTTGTTGAGCAGGAACGTTTGGgactggatggggg < 1:3725135‑M2/35‑14 (MQ=255) aTTGTTGAGCAGGAACGTTTGGgactggatggggg < 1:1906697‑M2/35‑14 (MQ=255) aTTGTTGAGCAGGAACGTTTGGGACTGGATGTGCt < 1:16703746/35‑1 (MQ=255) aTTGTTGAGCAGGAACGTTTGGGACTGGATGTGCt < 1:3013930/35‑1 (MQ=255) aTTGTTGAGCAGGAACGTTTGGGACTGGATATGCt < 1:19823627/35‑1 (MQ=255) ttgttgAGCAGGAACGTTTGGgactggatgggggg < 1:14337524‑M2/35‑15 (MQ=255) ttgttgAGCAGGAACGTTTGGGACTGGATGTGCTg < 1:13185843/35‑1 (MQ=255) ttgttgAGCAGGAACGTTTGGGACTGGATGTGCTg < 1:15678452/35‑1 (MQ=255) tgttgAGCAGGAACGTTTGGgactggatggggggg < 1:12385184‑M2/35‑16 (MQ=255) tgttgAGCAGGAACGTTTGGgactggatggggggg < 1:5958867‑M2/35‑16 (MQ=255) tgttgAGCAGGAACGTTTGGGACTGGATGTGCTgg < 1:954267/35‑1 (MQ=255) tgttgAGCAGGAACGTTTGGGACTGGATGTGCTgg < 1:2517380/35‑1 (MQ=255) tgttgAGCAGGAACGTTTGGGACTGGATGTGCTgg < 1:7368704/35‑1 (MQ=255) tgttgAGCAGGAACGTTTGGGACTGGATGTGCTgg < 1:3840229/35‑1 (MQ=255) gttgAGCAGGAACGTTTGGgactggatgggggggg < 1:9497143‑M2/35‑17 (MQ=255) gttgAGCAGGAACGTTTGGgactggatgggggggg < 1:12429249‑M2/35‑17 (MQ=255) gttgAGCAGGAACGTTTGGGACTGGATGTGCTGGt < 1:20544495/35‑1 (MQ=255) gttgAGCAGGAACGTTTGGGACTGGATGTGCTGGt < 1:14935413/35‑1 (MQ=255) gttgAGCAGGAACGTTTGGGACTGGATGTGCTGGt < 1:4355282/35‑1 (MQ=255) ttgAGCAGGAACGTTTGGgactggatggggggggt < 1:2479648‑M2/35‑18 (MQ=255) ttgAGCAGGAACGTTTGGgactggatggggggggg < 1:6673432‑M2/35‑18 (MQ=255) ttgAGCAGGAACGTTTGGgactggatggggggggg < 1:12855924‑M2/35‑18 (MQ=255) ttgAGCAGGAACGTTTGGGACTGGATGTGCTGGTa < 1:10813232/35‑1 (MQ=255) ttgAGCAGGAACGTTTGGGACTGGATGTGCTGGTa < 1:12275310/35‑1 (MQ=255) tgAGCAGGAACGTTTGGGACTGGATGTGCAGGTAc < 1:13489852/35‑1 (MQ=255) gAGCAGGAACGTTTGGGACTGGATGTGCTGGTACa < 1:15903820/35‑1 (MQ=255) gAGCAGGAACGTTTGGGACTGGATGTGCTGGTACa < 1:11592833/35‑1 (MQ=255) gAGCAGGAACGTTTGGGACTGGATGTGCTGGTACa < 1:13756891/35‑1 (MQ=255) gAGCAGGAACGTTTGGGACTGGATGGGGTGGtgaa > 1:14695529/1‑32 (MQ=25) gAGCAGGAACGTTTGGGACTGGATGGGGTGGGACa > 1:3450142/1‑35 (MQ=25) aGCAGGAACGTTTGGGACTGGATGTGCTGGTACAt < 1:17589283/35‑1 (MQ=255) gCAGGAACGTTTGGGACTGGATGTGCTGGTACATg < 1:256709/35‑1 (MQ=255) gCAGGAACGTTTGGGACTGGATGTGCTGGTACATg < 1:16841690/35‑1 (MQ=255) gCAGGAACGTTTGGGACTGGATGTGCTGGTACATg < 1:1843508/35‑1 (MQ=255) gCAGGAACGTTTGCGACTGGATGTGCTGGTACATg < 1:15048434/35‑1 (MQ=255) aGGAACGTTTGGGACTGGATGTGCTGGTACATGGc < 1:8680878/35‑1 (MQ=255) aGGAACGTTTGGGACTGGATGTGCTGGTACATGGc < 1:13573058/35‑1 (MQ=255) aGGAACGTTTGGGACTGGATGTGCTGGTACATGGc < 1:12912102/35‑1 (MQ=255) ggAACGTTTGGGACTGGATGTGCTGGTACATGGCg < 1:14203701/35‑1 (MQ=255) ggAACGTTTGGGACTGGATGTGCTGGTACATGGCg < 1:6266943/35‑1 (MQ=255) ggAACGTTTGGGACTGGATGTGCTGGTACATGGCg < 1:18147539/35‑1 (MQ=255) ggAACGTTAGGGACTGGATGTGCTGGTACATGGCg < 1:9203220/35‑1 (MQ=255) gAACGTTTGGGACTGGATGTGCTGGTACATGGCGa < 1:13807823/35‑1 (MQ=255) tttGGGACTGGATGTGCTGGTACATGGCGAGGCCg < 1:12015053/35‑1 (MQ=255) tttGGGACTGGATGTGCTGGTACATGGCGAGGCCg < 1:9153050/35‑1 (MQ=255) ttGGGACTGGATGTGCTGGTACATGGCGAGGCCGa < 1:15839013/35‑1 (MQ=255) ttGGGACTGGATGTGCTGGTACATGGCGAGGCCGa < 1:20331537/35‑1 (MQ=255) ttGGGACTGGATGTGCTGGTACATGGCGAGGCCGa < 1:7806297/35‑1 (MQ=255) tGGGACTGGATGTGCTGGTACATGGCGAGGCCGAg < 1:13140581/35‑1 (MQ=255) gggACTGGATGTGCTGGTACATGGCGAGGCCGAGc < 1:5726553/35‑1 (MQ=255) gggACTGGATGTGCTGGTACATGGCGAGGCCGAGc < 1:4482102/35‑1 (MQ=255) gggACTGGATGTGCTGGTACATGGCGAGGCCGAGc < 1:218900/35‑1 (MQ=255) gggACTGGATGTGCTGGTACATGGCGAGGCCGAGc < 1:4015051/35‑1 (MQ=255) | TATCAAGCAGGCCATTGTTGAGCAGGAACGTTTGGGACTGGATGTGCTGGTACATGGCGAGGCCGAGCG > REL606/3978871‑3978939 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |