New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 296632071 (0.690)9 (0.120) 3/36 NT 10.0% coding (1067/1992 nt) tktA transketolase 1, thiamin‑binding
?REL606 3882316 = 109 (1.410)coding (102/816 nt) atpB F0F1 ATP synthase subunit A

CCGAACGCTTCGATAGCATTCTGAGACGCTTTACGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2966281‑2966320
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggGGGGTTTTGTGGATCCACCAGCGAGAATGTACGC  >  REL606/3882316‑3882349
                                                                          
CCGAACGCTTCGATAGCATTCTGAGACGCTTTACG                                         <  1:1719370/35‑1
CCGAACGCTTCGATAGCATTCTGAGACGCTTTACG                                         >  1:19986316/1‑35
CCGAACGCTTCGATAGCATTCTGAGACGCTTTACG                                         <  1:20022247/35‑1
CCGAACGCTTCGATAGCATTCTGAGACGCTTTACG                                         <  1:5650572/35‑1
CCGAACGCTTCGATAGCATTCTGAGACGCTTTACG                                         >  1:5203077/1‑35
 CGAACGCTTCGATAGCATTCTGAGACGCTTTACGG                                        >  1:15412572/1‑35
 CGAACGCTTCGATAGCATTCTGAGACGCTTTACGG                                        >  1:20212870/1‑35
 CGAACGCTTCGATAGCATTCTGAGACGCTTTACGG                                        >  1:1351636/1‑35
 CGAACGCTTCGATAGCATTCTGAGACGCTTTACGG                                        <  1:12891530/35‑1
 CGAACGCTTCGATAGCATTCTGAGACGCTTTACGG                                        <  1:6385965/35‑1
 CGAACGCTTCGATAGCATTCTGAGACGCTTTACGG                                        >  1:1116781/1‑35
 CGAACGCTTCGATAGCATTCTGAGACGCTTTACGG                                        <  1:10092044/35‑1
  GAACGCTTCGATAGCATTCTGAGACGCTTTACGGC                                       >  1:5363014/1‑35
  GAACGCTTCGATAGCATTCTGAGACGCTTTACGGC                                       >  1:5008369/1‑35
  GAACGCTTCGATAGCATTCTGAGACGCTTTACGGC                                       <  1:20461708/35‑1
  GAACGCTTCGATAGCATTCTGAGACGCTTTACGGC                                       >  1:7091510/1‑35
  GAACGCTTCGATAGCATTCTGAGACGCTTTACGGC                                       >  1:8869607/1‑35
  GAACGCTTCGATAGCATTCTGAGACGCTTTACGGC                                       >  1:11746898/1‑35
  GAACGCTTCGATAGCATTATGAGACGCTTTACGGC                                       <  1:5956111/35‑1
   AACGCTTCGATAGCATTCTGAGACGCTTTACGGCT                                      >  1:17475387/1‑35
   AACGCTTCGATAGCATTCTGAGACGCTTTACGGCT                                      >  1:18054031/1‑35
   AACGCTTCGATAGCATTCTGAGACGCTTTACGGCT                                      >  1:17762133/1‑35
    ACGCTTCGATAGCATTCTGAGACGCTTTACGGCTG                                     >  1:10717966/1‑35
    ACGCTTCGATAGCATTCTGAGACGCTTTACGGCTG                                     <  1:19189049/35‑1
    ACGCTTCGATAGCATTCTGAGACGCTTTACGGCTG                                     >  1:9847450/1‑35
    ACGCTTCGATAGCATTCTGAGACGCTTTACGGCTG                                     <  1:17950623/35‑1
     CGCTTCGATAGCATTCTGAGACGCTTTACGGCTGG                                    <  1:13242663/35‑1
     CGCTTCGATAGCATTCTGAGACGCTTTACGGCTGG                                    >  1:7243982/1‑35
     CGCTTCGATAGCATTCTGAGACGCTTTACGGCTGG                                    <  1:17462861/35‑1
     CGCTTCGATAGCATTCTGAGACGCTTTACGGCTGG                                    <  1:7260884/35‑1
     CGCTTCGATAGCATTCTGAGACGCTTTACGGCTGG                                    <  1:9144645/35‑1
      GCTTCGATAGCATTCTGAGACGCTTTACGGCTGGG                                   >  1:15989979/1‑35
      GCTTCGATAGCATTCTGAGACGCTTTACGGCTGGG                                   >  1:7245485/1‑35
      GCTTCGATAGCATTCTGAGACGCTTTACGGCTGGG                                   >  1:4891808/1‑35
      GCTTCGATAGCATTCTGAGACGCTTTACGGCTGGG                                   >  1:892599/1‑35
      GCTTCGATAGCATTCTGAGACGCTTTACGGCTGGG                                   >  1:9833426/1‑35
      GCTTCGATAGCATTCTGAGACGCTTTACGGCTGGG                                   >  1:17732445/1‑35
       CTTCGATAGCATTCTGAGACGCTTTACGGCTGGGG                                  >  1:8570269/1‑35
       CTTCGATAGCATTCTGAGACGCTTTACGGCTGGGG                                  >  1:8278007/1‑35
       CTTCGATAGCATTCTGAGACGCTTTACGGCTGGGG                                  >  1:7186942/1‑35
       CTTCGATAGCATTCTGAGACGCTTTACGGCTGGGG                                  >  1:18664796/1‑35
       CTTCGATAGCATTCTGAGACGCTTTACGGCTGGGG                                  >  1:5563828/1‑35
        TTCGATAGCATTCTGAGACGCTTTACGGCTGGGGG                                 >  1:7549252/1‑35
        TTCGATAGCATTCTGAGACGCTTTACGGCTGGGGG                                 >  1:15366508/1‑35
        TTCGATAGCATTCTGAGACGCTTTACGGCTGGGGG                                 >  1:18972715/1‑35
        TTCGATAGCATTCTGAGACGCTTTACGGCTGGGGG                                 >  1:15392482/1‑35
         TCGATAGCATTCTGAGACGCTTTACGGCTGGGGGt                                >  1:9272602/1‑34
         TCGATAGCATTCTGAGACGCTTTACGGCTGGGGGG                                >  1:9767902/1‑35
         TCGATAGCATTCTGAGACGCTTTACGGCTGGGGGG                                >  1:15665337/1‑35
         TCGATAGCATTCTGAGACGCTTTACGGCTGGGGGG                                >  1:521170/1‑35
         TCGATAGCATTCTGAGACGCTTTACGGCTGGGGGG                                >  1:18902922/1‑35
         TCGATAGCATTCTGAGACGCTTTACGGCTGGGGGG                                >  1:5001632/1‑35
         TCGATAGCATTCTGAGACGCTTTACGGCTGGGGGG                                >  1:13673834/1‑35
          CGATAGCATTCTGAGACGCTTTACGGCTGGGGGGg                               >  1:12739939/1‑34
          CGATAGCATTCTGAGACGCTTTACGGCTGGGGGGT                               >  1:6675048/1‑35
          CGATAGCATTCTGAGACGCTTTACGGCTGGGGGGT                               >  1:1328991/1‑35
          CGATAGCATTCTGAGACGCCTTACGGCTGGGGGGT                               >  1:7010192/1‑35
           GATAGCATTCTGAGACGCTTTACGGCTGGGGGGTT                              >  1:152181/1‑35
            ATAGCATTCTGAGACGCTTTACGGCTGGGGGTTTT                             >  1:2317498/1‑35
            ATAGCATTCTGAGACGCTTTACGGCTGGGGGTTTT                             >  1:18674926/1‑35
            ATAGCATTCTGAGACGCTTTACGGCTGGGGGGTTT                             >  1:2992234/1‑35
             TAGCATTCTGAGACGCTTTACGGCTGGGGGGTTTT                            >  1:6757197/1‑35
             TAGCATTCTGAGACGCTTTACGGCTGGGGGGTTTT                            >  1:14445773/1‑35
             TAGCATTCTGAGACGCTTTACGGCTGGGGGGTTTT                            >  1:6624441/1‑35
                CATTCTGAGACGCTTTACGGCTGGGGGGTTTTtgc                         >  1:19484119/1‑32
                CATTCTGAGACGCTTTACGGCTGGGGGGTTTTtcc                         >  1:4959003/1‑32
                                       GGGGGTTTTGTGGATCCACCAGCGAGAATGTACGC  >  1:7057531/1‑35
                                       GGGGGTTTTGTGGATCCACCAGCGAGAATGTACGC  >  1:316925/1‑35
                                       GGGGGTTTTGTGGATCCACCAGCGAGAATGTACGC  <  1:1420046/35‑1
                                       GGGGGTTTTGTGGATCCACCAGCGAGAATGTACGC  >  1:10544002/1‑35
                                                                          
CCGAACGCTTCGATAGCATTCTGAGACGCTTTACGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2966281‑2966320
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggGGGGTTTTGTGGATCCACCAGCGAGAATGTACGC  >  REL606/3882316‑3882349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.