New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2880569 = | 60 (0.580) | 11 (0.140) | 4/36 | NT | 19.1% | coding (101/1230 nt) | yqeG | predicted transporter |
? | REL606 | 3287064 = | 48 (0.620) | coding (1197/2337 nt) | arcB | hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
Only 100 of 118 total aligned reads displayed.
CGGCGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTA > REL606/3287030‑3287098 | cGGCGTTACTGATGAGGTTCCACAGGATCTGCCGt > 1:15515452/1‑35 (MQ=255) cGGCGTTACTGATGAGGTTCCACAGGATCTGCCGt > 1:139737/1‑35 (MQ=255) cGGCGTTACTGATGAGGTTCCACAGGATCTGCCGt > 1:9342621/1‑35 (MQ=255) cGGCGTTACTGATGAGGTTCCACAGGATCTGCCGt > 1:9155924/1‑35 (MQ=255) ggCGTTACTGATGAGGTTCCACAGGATCTGCCGTa > 1:12895629/1‑35 (MQ=255) gCGTTACTGATGAGGTTCCACAGGATCTGCCGTaa > 1:16099093/1‑35 (MQ=255) cGTTACTGATGAGGTTCCACAGGATCTGCCGTaca > 1:18490216/1‑33 (MQ=255) cGTTACTGATGAGGTTCCACAGGATCTGCCGTaaa > 1:8329634/1‑35 (MQ=255) cGTTACTGATGAGGTTCCACAGGATCTGCCGCaaa > 1:16301212/1‑35 (MQ=255) gTTACTGATGAGGTTCCACAGGATCTGCCGTAAAc > 1:6986529/1‑35 (MQ=255) ttACTGATGAGGTTCCACAGGATCTGCCGTAAAcg > 1:14464875/1‑35 (MQ=255) ttACTGATGAGGTTCCACAGGATCTGCCGTAAAcg > 1:3875993/1‑35 (MQ=255) tACTGATGAGGTTCCACAGGATCTGCCGTAAAcgc > 1:6839687/1‑35 (MQ=255) aCTGATGAGGTTCCACAGGATCTGCCGTAAAcgcg > 1:838879/1‑35 (MQ=255) aCTGATGAGGTTCCACAGGATCTGCCGTAAAcgcg > 1:5631802/1‑35 (MQ=255) aCTGATGAGGTTCCACAGGATCTGCCGTAAAcgcg > 1:12822511/1‑35 (MQ=255) aCTGATGAGGTTCCACAGGATCTGCCGTAAAcgcg > 1:478328/1‑35 (MQ=255) aCTGATGAGGTTCCACAGGATCTGCCGTAAAcgcg > 1:10830269/1‑35 (MQ=255) cTGATGAGGTTCCACAGGATCTGCCGTAAACGCGt > 1:15341010/1‑35 (MQ=255) cTGATGAGGTTCCACAGGATCTGCCGTAAACGCGt > 1:14785122/1‑35 (MQ=255) cTGATGAGGTTCCACAGGATCTGCCGTAAACGCGt > 1:3284714/1‑35 (MQ=255) cTGATGAGGTTCCACAGGATCTGCCGTAAACGCGt > 1:4227722/1‑35 (MQ=255) cTGATGAGGTTCCACAGGATCTGCCGTAAACGCGt > 1:2531850/1‑35 (MQ=255) cTGATGAGGTTCCACAGGATCTGCCGTAAACGCGt > 1:8613312/1‑35 (MQ=255) tgatgaTGTTCCACAGGATCTGCCGTAAACGCGTc > 1:3393107/1‑35 (MQ=255) tgatgaGGTTCCACAGGATCTGCCGTAAACGCGTc > 1:8352974/1‑35 (MQ=255) tgatgaGGTTCCACAGGATCTGCCGTAAACGCGTc > 1:10589414/1‑35 (MQ=255) gatgaGGTTCCACAGGATCTGCCGTAAACGCGTcc > 1:10757398/1‑35 (MQ=255) gatgaGGTTCCACAGGATCTGCCGTAAACGCGTcc > 1:10650372/1‑35 (MQ=255) gatgaGGTTCCACAGGATCTGCCGTAAACGCGTcc > 1:9758393/1‑35 (MQ=255) atgaGGTTCCACAGGATCTGCCGTAAACGCGTccc > 1:17251004/1‑35 (MQ=255) atgaGGTTCCACAGGATCTGCCGTAAACGCGTccc > 1:16668889/1‑35 (MQ=255) atgaGGTTCCACAGGATCTGCCGTAAACGCGTccc > 1:1101873/1‑35 (MQ=255) tgaGGTTCCACAGGATCTGCCGTAAACGCGTCCCg > 1:9843386/1‑35 (MQ=255) tgaGGTTCCACAGGATCTGCCGTAAACGCGTCCCg > 1:2752266/1‑35 (MQ=255) gaGGTTCCACAGGATCTGCCGTAAACGCGTCCCGt > 1:9191612/1‑35 (MQ=255) gaGGTTCCACAGGATCTGCCGTAAACGCGTCCCGt > 1:10105219/1‑35 (MQ=255) aGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTc > 1:12789435/1‑35 (MQ=255) aGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTc > 1:17221787/1‑35 (MQ=255) ggTTCCACAGGATCTGCCGTAAACGCGTCCCGTCg > 1:3219712/1‑35 (MQ=255) ggTCCCACAGGCCCTGCCGTAAACGCGTCCCGTCg < 1:1571834/35‑1 (MQ=25) gTTCCACAGGATCTGCCGTAAACGCGTCCCGTCgg > 1:4054774/1‑35 (MQ=255) gTTCCACAGGATCTGCCGTAAACGCGTCCCGTCgg > 1:2799315/1‑35 (MQ=255) gTTCCACAGGATCTGCCGTAAACGCGACCCGTTgg > 1:18783095/1‑35 (MQ=38) tcccacagcccctgccgTAAACGCGTCCCGTCGGt < 1:11471076‑M2/18‑1 (MQ=255) tcccacagcccctgccgTAAACGCGTCCCGTCGGt < 1:2308832‑M2/18‑1 (MQ=255) ccccacagcccctgccgTAAACGCGTCCCGTCGGt < 1:15978071‑M2/18‑1 (MQ=255) cccacaggccctgccgTAAACGCGTCCCGTCGGTa < 1:15580750‑M2/19‑1 (MQ=255) ccccagcccctgccgTAAACGCGTCCCGTCGGTaa < 1:12764582‑M2/20‑1 (MQ=255) ccacagcccctgccgTAAACGCGTCCCGTCGGTaa < 1:3544434‑M2/20‑1 (MQ=255) cccagcccctgccgTAAACGCGTCCCGTCGGTAAt < 1:6864622‑M2/21‑1 (MQ=255) cacagcccctgccgTAAACGCGTCCCGTCGGTAAt < 1:5312267‑M2/21‑1 (MQ=255) cacaTGCTCTGCCGTAAACGCGTCCCGTCGGTAAt < 1:2307572/35‑1 (MQ=37) cacaGGATCTGCCGTAAACGCGTCCCGTCGGGAAt > 1:17250765/1‑35 (MQ=255) cacaGGATCTGCCGTAAACGCGTCCCGTCGGGAAt > 1:17579531/1‑35 (MQ=255) cacaGGATCTGCCGTAAACGCGTCCCGTCGGGAAt > 1:269389/1‑35 (MQ=255) cacaGGACCTGCCGTAAACGCGTCCCGTCGGTAAt < 1:2096585/35‑1 (MQ=255) acagcccctgccgTAAACGCGTCCCGTCGGTAATg < 1:16954208‑M2/22‑1 (MQ=255) acaGGATCTGCCGTAAACGCGTCCCGTCGGTAATg > 1:1401539/1‑35 (MQ=255) acaGGATCTGCCGTAAACGCGTCCCGTCGGGAATg > 1:19919397/1‑35 (MQ=255) gggcccctgccgTAAACGCGTCCCGTCGGTAATGa < 1:18002285‑M2/23‑1 (MQ=255) cggcccctgccgTAAACGCGTCCCGTCGGTAATGa < 1:1350822‑M2/23‑1 (MQ=255) cagcccctgccgTAAACGCGTCCCGTCGGTAATGa < 1:12085552‑M2/23‑1 (MQ=255) ggtccctgccgTAAACGCGTCCCGTCGGTAATGAc < 1:6724584‑M2/24‑1 (MQ=255) agcccctgccgTAAACGCGTCCCGTCGGTAATGAc < 1:15025485‑M2/24‑1 (MQ=255) aGGATCTGCCGTAAACGCGTCCCGTCGGGAATgtc > 1:5750243/1‑33 (MQ=37) aGGATCTGCCGTAAACGCGTCCCGTCGGGAATggc > 1:19542450/1‑33 (MQ=37) aGGATCTGCCGTAAACGCGTCCCGTCGGGAATgcc > 1:19354065/1‑33 (MQ=37) aGGATCTGCCGTAAACGCGTCCCGTCGGGAATGAc > 1:4815643/1‑35 (MQ=255) aGGATCTGCCGTAAACGCGTCCCGTCGGGAATGAc > 1:13320548/1‑35 (MQ=255) gATCTGCCGTAAACGCGTCCCGTCGGCAATGGCCt > 1:2461663/1‑35 (MQ=37) ccctgccgTAAACGCGTCCCGTCGGTAATGACCTg < 1:20347724‑M2/27‑1 (MQ=255) ccctgccgTAAACGCGTCCCGTCGGTAATGACCTg < 1:15579451‑M2/27‑1 (MQ=255) ccctgccgTAAACGCGTCCCGTCGGTAATGACCTg < 1:2335118‑M2/27‑1 (MQ=255) tCTGCCGTAAACGCGTCCCGTCGGGACTGACCTGa > 1:11492547/1‑35 (MQ=37) tCTGCCGTAAACGCGTCCCGTCGGGAATGACCtta > 1:5372909/1‑33 (MQ=37) tCTGCCGTAAACGCGTCCCGTCGGGAATGACCTGa > 1:1128367/1‑35 (MQ=255) tCTGCCGTAAACGCGTCCCGTCGGGAATGACCTGa > 1:16866908/1‑35 (MQ=255) cctgccgTAAACGCGTCCCGTCGGTAATGACCTGa < 1:11398269‑M2/28‑1 (MQ=255) cctgccgTAAACGCGTCCCGTCGGTAATGACCTGa < 1:18274853‑M2/28‑1 (MQ=255) ctgccgTAAACGCGTCCCGTCGTTAATGACCTGAt > 1:18477769‑M2/7‑35 (MQ=255) ctgccgTAAACGCGTCCCGTCGGTAATGACCTGAt < 1:4450937‑M2/29‑1 (MQ=255) ctgccgTAAACGCGTCCCGTCGGTAATGACCTGAt < 1:11907427‑M2/29‑1 (MQ=255) ctgccgTAAACGCGTCCCGTCGGTAATGACCTGAt < 1:12452400‑M2/29‑1 (MQ=255) ctgccgTAAACGCGTCCCGTCGGTAATGACCCGAt > 1:14437258‑M2/7‑35 (MQ=255) ctgccgTAAACGCGTCCCGTCGGGAATGACCTGAt > 1:4857428‑M2/7‑35 (MQ=255) tgccgTAAACGCGTCCCGTCGGTAATGACCTGATg < 1:12790138‑M2/30‑1 (MQ=255) tgccgTAAACGCGTCCCGTCGGTAATGACCTGATg < 1:20391470‑M2/30‑1 (MQ=255) tgccgTAAACGCGTCCCGTCGGGAATGACCTGATg > 1:6204887‑M2/6‑35 (MQ=255) gCCGTAAACGCGTCCCGTCGGTCATTACCTCATGc > 1:19292304/1‑35 (MQ=25) ccgTAAACGCGTCCCGTCGGGAATGACCTGATGCg > 1:12715676‑M2/4‑35 (MQ=255) cgTAAACGCGTCCCGTCGGTAATGACCTGATGCgg < 1:18605720‑M2/33‑1 (MQ=255) gTAAACGCGTCCCGTCGGTAATGACCTGATGCGGt < 1:835696‑M2/34‑1 (MQ=255) gTAAACGCGTCCCGTCGGTAATGACCTGATGCGGt < 1:1905398‑M2/34‑1 (MQ=255) gTAAACGCGTCCCGTCGGTAATGACCTGATGCGGt > 1:6788530‑M2/2‑35 (MQ=255) gTAAACGCGTCCCGTCGGTAATGACCTGATGCGGt < 1:6005754‑M2/34‑1 (MQ=255) gTAAACGCGTCCCGTCGGTAATGACCTGATGCGGt < 1:2000805‑M2/34‑1 (MQ=255) gTAAACGCGTCCCGTCGGGAATGACCTGATGcggg > 1:8002158‑M2/2‑34 (MQ=255) tAAACGCGTCCCGTCGGTAATGACCTGATGCGGTa < 1:14751492/35‑1 (MQ=255) tAAACGCGTCCCGTCGGGAATGACCTGATGCggga > 1:17773612/1‑33 (MQ=38) | CGGCGTTACTGATGAGGTTCCACAGGATCTGCCGTAAACGCGTCCCGTCGGTAATGACCTGATGCGGTA > REL606/3287030‑3287098 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |