New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 293737 =51 (0.500)8 (0.090) 4/40 NT 11.3% intergenic (+7/‑520) ykgD/ykgE predicted DNA‑binding transcriptional regulator/predicted oxidoreductase
?REL606 = 1036069 83 (0.970)intergenic (+41/+35) ycbG/ompA hypothetical protein/outer membrane protein A (3a;II*;G;d)

CCCGGAATGCGGATTATCTTTGCCCTGATTTCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/293774‑293737
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTT  <  REL606/1036069‑1036036
                                                                        
CCCGGAATGCGGATTATCTTTGCCCTGATTTCTGG                                       >  1:4383146/1‑35
CCCGGAATGCGGATTATCTTTGCCCTGATTTCTGG                                       >  1:8584255/1‑35
CCCGGAATGCGGATTATCTTTGCCCTGATTTCTGG                                       >  1:16246915/1‑35
 CCGGAATGCGGATTATCTTTGCCCTGATTTCTGGC                                      <  1:10170043/35‑1
 CCGGAATGCGGATTATCTTTGCCCTGATTTCTGGC                                      >  1:4457732/1‑35
 CCGGAATGCGGATTATCTTTGCCCTGATTTCTGGC                                      <  1:15946774/35‑1
  CGGAATGCGGATTATCTTTGCCCTGATTTCTGGCG                                     >  1:10241937/1‑35
  CGGAATGCGGATTATCTTTGCCCTGATTTCTGGCG                                     >  1:7421834/1‑35
  CGGAATGCGGATTATCTTTGCCCTGATTTCTGGCG                                     >  1:17585832/1‑35
  CGGAATGCGGATTATCTTTGCCCTGATTTCTGGCG                                     >  1:5348111/1‑35
  CGGAATGCGGATTATCTTTGCCCTGATTTCTGGCG                                     >  1:5526943/1‑35
   GGAATGCGGATTATCTTTGCCCTGATTTCTGGCGG                                    >  1:3850038/1‑35
   GGAATGCGGATTATCTTTGCCCTGATTTCTGGCGG                                    >  1:19418547/1‑35
   GGAATGCGGATTATCTTTGCCCTGATTTCTGGCGG                                    <  1:1795032/35‑1
   GGAATGCGGATTATCTGTGCCCTGATTTCTGGCGG                                    >  1:4094057/1‑35
    GAATGCGGATTATCTTTGCCCTGATTTCTGGCGGa                                   >  1:9482652/1‑34
    GAATGCGGATTATCTTTGCCCTGATTTCTGGCGGG                                   >  1:7963738/1‑35
    GAATGCGGATTATCTTTGCCCTGATTTCTGGCGGG                                   >  1:894536/1‑35
     AATGCGGATTATCTTTGCCCTGATTTCTGGCGGGt                                  >  1:5863941/1‑34
     AATGCGGATTATCTTTGCCCTGATTTCTGGCGGGG                                  >  1:5973977/1‑35
     AATGCGGATTATCTTTGCCCTGATTTCTGGCGGGG                                  >  1:17528658/1‑35
     AATGCGGATTATCTTTGCCCTGATTTCTGGCGGGG                                  >  1:689295/1‑35
      ATGCGGATTATCTTTGCCCTGATTTCTGGCGGGGg                                 >  1:15827481/1‑34
      ATGCGGATTATCTTTGCCCTGATTTCTGGCGGGGg                                 >  1:7574261/1‑34
      ATGCGGATTATCTTTGCCCTGATTTCTGGCGGGGg                                 >  1:10260297/1‑34
      ATGCGGATTATCTTTGCCCTGATTTCTGGCGGGGT                                 >  1:18707773/1‑35
       TGCGGATTATCTTTGCCCTGATTTCTGGCGGGGTT                                >  1:2840900/1‑35
        GCGGATTATCTTTGCCCTGATTTCTGGCGGGGgtg                               >  1:1473895/1‑32
        GCGGATTATCTTTGCCCTGATTTCTGGCGGGGTTT                               >  1:9734677/1‑35
          GGATTATCTTTGCCCTGATTTCTGGCGGGGGTTTT                             >  1:15499644/1‑35
           GATTATCTTTGCCCTGATTTCTGGCGGGGGTTTTT                            >  1:18002812/1‑35
            ATTATCTTTGCCCTGATTTCTGGCGGGGTTTTTTT                           >  1:19861292/1‑35
            ATTATCTTTGCCCTGATTTCTGGCGGGGTTTTTTT                           >  1:798993/1‑35
            ATTATCTTTGCCCTGATTTCTGGCGGGGTTGTTTT                           >  1:12502367/1‑35
            ATTATCTTTGCCCTGATTTCTGGCGGGGGTTTTTT                           >  1:10405087/1‑35
              TATCTTTGCCCTGATTTCTGGCGGGGTTTTTTTTG                         >  1:4744627/1‑35
               ATCTTTGCCCTGATTTCTGGCGGGGGTTTTTTTGg                        >  1:6125878/1‑34
                                  GCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGA     >  1:7378951/1‑35
                                  GCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGA     >  1:12730396/1‑35
                                  GCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGA     >  1:16955710/1‑35
                                   CGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGAC    >  1:721832/1‑35
                                   CGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGAC    >  1:8008890/1‑35
                                   CGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGAC    <  1:1575650/35‑1
                                   CGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGAC    >  1:11359193/1‑35
                                     GGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTT  <  1:15387150/35‑1
                                     GGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTT  <  1:15252871/35‑1
                                     GGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTT  >  1:15416460/1‑35
                                     GGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTT  >  1:8127690/1‑35
                                                                        
CCCGGAATGCGGATTATCTTTGCCCTGATTTCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/293774‑293737
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTT  <  REL606/1036069‑1036036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.