New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2883502 | NA (NA) | 22 (0.270) | 4/38 | NT | 28.1% | noncoding (791/1255 nt) | IS3 | repeat region |
? | REL606 | 3001880 = | 71 (0.690) | coding (2317/2847 nt) | flu | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
Only 100 of 191 total aligned reads displayed.
GGAGACATCACGTACTTACGTACAGATGAAGGCTggctg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2883469‑2883502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCC > REL606/3001880‑3001918 GGAGACATCACGTACTTACGTACAGATGAAGGCTG > 1:9623695/1‑35 GGAGACATCACGTACTTACGTACAGATGAAGGCTG < 1:9040532/35‑1 GGAGACATCACGTACTTACGTACAGATGAAGGCTG < 1:7985771/35‑1 GGAGACATCACGTACTTACGTACAGATGAAGGCTG > 1:5313558/1‑35 GGAGACATCACGTACTTACGTACAGATGAAGGCTG > 1:20265846/1‑35 GGAGACATCACGTACTTACGTACAGATGAAGGCTG < 1:18263018/35‑1 GGAGACATCACGTACTTACGTACAGATGAAGGCTG < 1:1703409/35‑1 GGAGACATCACGTACTTACGTACAGATGAAGGCTG > 1:16270318/1‑35 GGAGACATCACGTACTTACGTACAGATGAAGGCTG > 1:14040692/1‑35 GGAGACATCACGTACTTACGTACAGATGAAGGCTG < 1:11473126/35‑1 GGAGACATCACGTACTTACGTACAGATGAAGGCTG < 1:10036336/35‑1 GGAGACATCACGTACTTACGTACAGATGAAGGCTG < 1:11264848/35‑1 GGAGACATCACGTACTTACGTAAAGATGAAGGCTG > 1:3977098/1‑35 GGAGACATCACGTACTTACATACAGATGAAGGCTG > 1:15430165/1‑35 GAGACATCACGTACTTACGTACAGATGAAGGCTGG < 1:1905526/35‑1 GAGACATCACGTACTTACGTACAGATGAAGGCTGG < 1:9479080/35‑1 GAGACATCACGTACTTACGTACAGATGAAGGCTGG < 1:10040114/35‑1 GAGACATCACGTACTTACGTACAGATGAAGGCTGG > 1:894970/1‑35 GAGACATCACGTACTTACGTACAGATGAAGGCTGG < 1:12941521/35‑1 GAGACATCACGTACTTACGTACAGATGAAGGCTGG < 1:19990734/35‑1 GAGACATCACGTACTTACGTACAGATGAAGGCTGG < 1:2660259/35‑1 GAGACATCACGTACTTACGTACAGATGAAGGCTGG > 1:6623103/1‑35 GAGACATCACGTACTTACGTACAGATGAAGGCTGG > 1:14104458/1‑35 GAGACATCACGTACTTACGTACAGATGAAGGCTGG < 1:14551561/35‑1 AGACATCACGTACTTACGTACAGATGAAGGCTGtc > 1:5671554/1‑33 AGACATCACGTACTTACGTACAGATGAAGGCTGGC > 1:10275610/1‑35 AGACATCACGTACTTACGTACAGATGAAGGCTGGC > 1:4498490/1‑35 AGACATCACGTACTTACGTACAGATGAAGGCTGGC > 1:6127861/1‑35 AGACATCACGTACTTACGTACAGATGAAGGCTGGC < 1:14143493/35‑1 AGACATCACGTACTTACGTACAGATGAAGGCTGGC > 1:10332828/1‑35 AGACATCACGTACTTACGTACAGATGAAGGCTGGC > 1:9540928/1‑35 AGACATCACGTACTTACGTACAGATGAAGGCTGGC > 1:17252092/1‑35 GACATCACGTACTTACGTACAGATTAAGGCTGGCT > 1:16180397/1‑35 GACATCACGTACTTACGTACAGATGAAGGCTGGCT > 1:2945112/1‑35 GACATCACGTACTTACGTACAGATGAAGGCTGGCT < 1:7479435/35‑1 GACATCACGTACTTACGTACAGATGAAGGCTGGCT > 1:2192333/1‑35 GACATCACGTACTTACGTACAGATGAAGGCTGGCT < 1:8422818/35‑1 GACATCACGTACTTACGTACAGATGAAGGCTGGCT < 1:1845026/35‑1 GACATCACGTACTTACGTACAGATGAAGGCTGGCT < 1:10446574/35‑1 GACATCACGTACTTACGTACAGATGAAGGCTGGCT < 1:14897149/35‑1 GACATCACGTACTTACGTACAGATGAAGGCTGGCT > 1:1571196/1‑35 GACATCACGTACTTACGTACAGATGAAGGCTGGCT > 1:1639399/1‑35 ACATCACGTACTTACGTACAGATGAAGGCTGGCTG < 1:6097935/35‑1 ACATCACGTACTTACGTACAGATGAAGGCTGGCTG > 1:6213108/1‑35 ACATCACGTACTTACGTACAGATGAAGGCTGGCTG > 1:7002903/1‑35 ACATCACGTACTTACGTACAGATGAAGGCTGGCTG < 1:4963961/35‑1 ACATCACGTACTTACGTACAGATGAAGGCTGGCTG < 1:13257873/35‑1 ACATCACGTACTTACGTACAGATGAAGGCTGGCTG > 1:3511041/1‑35 ACATCACGTACTTACGTACAGATGAAGGCTGGCTG < 1:7555987/35‑1 ACATCACGTACTTACGTACAGATGAAGGCTGGCTG > 1:17989407/1‑35 ACATCACGTACTTACGTACAGATGAAGGCTGGCTG > 1:978822/1‑35 ACATCACGTACTTACGTACAGATGAAGGCTGGCTG > 1:12781689/1‑35 CATCACGTACTTACGTACAGATGAAGGCTGGCTGG > 1:5817635/1‑35 CATCACGTACTTACGTACAGATGAAGGCTGGCTGG > 1:14230180/1‑35 CATCACGTACTTACGTACAGATGAAGGCTGGCTGG > 1:17623015/1‑35 CATCACGTACTTACGTACAGATGAAGGCTGGCTGG > 1:11875176/1‑35 CATCACGTACTTACGTACAGATGAAGGCTGGCTGG > 1:17160972/1‑35 ATCACGTACTTACGTACAGATGAAGGCTGGCTGGa > 1:14748049/1‑34 ATCACGTACTTACGTACAGATGAAGGCTGGCTGGG > 1:11183888/1‑35 ATCACGTACTTACGTACAGATGAAGGCTGGCTGGG > 1:3732121/1‑35 ATCACGTACTTACGTACAGATGAAGGCTGGCTGGG > 1:3614348/1‑35 TCACGTACTTACGTACAGATGAAGGCTGGCTGGGt > 1:3566303/1‑34 TCACGTACTTACGTACAGATGAAGGCTGGCTGGGt > 1:15991258/1‑34 TCACGTACTTACGTACAGATGAAGGCTGGCTGGGt > 1:10189500/1‑34 TCACGTACTTACGTACAGATGAAGGCTGGCTGGGG > 1:4294221/1‑35 CACGTACTTACGTACAGATGAAGGCTGGCTGGatt > 1:9116692/1‑32 CACGTACTTACGTACAGATGAAGGCTGGCTGGTGC > 1:13978160/1‑35 CACGTACTTACGTACAGATGAAGGCTGGCTGGGtt > 1:7650232/1‑33 CACGTACTTACGTACAGATGAAGGCTGGCTGGGtt > 1:6489095/1‑33 CACGTACTTACGTACAGATGAAGGCTGGCTGGGtt > 1:8728552/1‑33 CACGTACTTACGTACAGATGAAGGCTGGCTGGGtg > 1:19709310/1‑33 CACGTACTTACGTACAGATGAAGGCTGGCTGGGtc > 1:19518934/1‑33 CACGTACTTACGTACAGATGAAGGCTGGCTGGGtc > 1:11690451/1‑33 CACGTACTTACGTACAGATGAAGGCTGGCTGGGtc > 1:3355642/1‑33 CACGTACTTACGTACAGATGAAGGCTGGCTGGGtc > 1:783479/1‑33 CACGTACTTACGTACAGATGAAGGCTGGCTGGGGC > 1:9951162/1‑35 ACGTACTTACGTACAGATGAAGGCTGGCTGGGttc > 1:6899855/1‑32 ACGTACTTACGTACAGATGAAGGCTGGCTGGGttc > 1:1197214/1‑32 ACGTACTTACGTACAGATGAAGGCTGGCTGGGtgt > 1:12438694/1‑32 ACGTACTTACGTACAGATGAAGGCTGGCTGGGtgc > 1:7064001/1‑32 ACGTACTTACGTACAGATGAAGGCTGGCTGGGTCT > 1:20066025/1‑35 ACGTACTTACGTACAGATGAAGGCTGGCTGGGGtt > 1:1829076/1‑33 ACGTACTTACGTACAGATGAAGGCTGGCTGGGGCT > 1:3034021/1‑35 CGTACTTACGTACAGATGAAGGCTGGCTGGGTCTG > 1:1105926/1‑35 CGTACTTACGTACAGATGAAGGCTGGCTGGGTCTG > 1:6210812/1‑35 CGTACTTACGTACAGATGAAGGCTGGCTGGGTCTG > 1:499723/1‑35 CGTACTTACGTACAGATGAAGGCTGGCTGGGGTTG > 1:7493801/1‑35 GTACTTACGTACAGATGAAGGCTGGCTGGGGGTGt > 1:5276197/1‑34 TACTTACGTACAGATGAAGGCTGGCTGGGTCTGGg > 1:19458312/1‑34 TACTTACGTACAGATGAAGGCTGGCTGGGTCTGGC > 1:13046958/1‑35 TACTTACGTACAGATGAAGGCTGGCTGGGGTTGGC > 1:20490417/1‑35 TACTTACGTACAGATGAAGGCTGGCTGGGGCTGGg > 1:3090465/1‑34 TACTTACGTACAGATGAAGGCTGGCTGGGGCTGGC > 1:5218797/1‑35 ACTTACGTACAGATGAAGGCTGGCTGGGTCTGGCa > 1:16751839/1‑34 GGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCT < 1:17856769/35‑1 CTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGC < 1:3229114/35‑1 CTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGC < 1:1521837/35‑1 gGGGGCTGGCGGGGCTCACTGGAAACCGGTCTGCC < 1:5026499/34‑1 TGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCC < 1:19801304/35‑1 GGGGCTGGCTGGGCTGACTGGAAACCGGTCTGCCC < 1:5583409/35‑1 GGAGACATCACGTACTTACGTACAGATGAAGGCTggctg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2883469‑2883502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCC > REL606/3001880‑3001918 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |