New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2750665 =112 (1.090)16 (0.250) 4/30 NT 22.7% coding (1468/2079 nt) fhlA DNA‑binding transcriptional activator
?REL606 3792209 = 39 (0.610)coding (315/414 nt) ECB_03532 hypothetical protein

Only 100 of 237 total aligned reads displayed.

CCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGA  >  REL606/2750631‑2750699
                                  |                                  
ccTCGACGAAGTGGGCGATATGCCACTGGAGTTAc                                    >  1:5527687/1‑35 (MQ=255)
ccTCGACGAAGTGGGCGATATGCAACTGGAGTTAc                                    <  1:18326891/35‑1 (MQ=255)
 cTCGACGAAGTGGGCGATATGCCACTGGAGTTACa                                   <  1:2383294/35‑1 (MQ=255)
 cTCGACGAAGTGGGCGATATGCCACTGGAGTTACa                                   <  1:13378008/35‑1 (MQ=255)
 cTCGACGAAGTGGGCGATATGCCACTGGAGTTACa                                   >  1:8950690/1‑35 (MQ=255)
 cTCGACGAAGTGGGCGATATGCCACTGGAGTTACa                                   <  1:1704894/35‑1 (MQ=255)
 cTCGACGAAGTGGGCGATATGCCACTGGAGTTACa                                   >  1:12943377/1‑35 (MQ=255)
 cTCGACGAAGTGGGCGATATGCCACTGGAGTTACa                                   <  1:18384085/35‑1 (MQ=255)
 cTCGACGAAGTGGGCGATATGCCACTGGAGTTACa                                   >  1:685268/1‑35 (MQ=255)
 cTCGACGAAGTGGGCGATATGCCACTGGAGTTACa                                   <  1:4161358/35‑1 (MQ=255)
 cTCGACGAAGTGGGCGATATGCCACTGGAGTTACa                                   <  1:19069737/35‑1 (MQ=255)
 cTCGACGAAGTGGGCGATATGCCACTGGAGTTACa                                   <  1:11854147/35‑1 (MQ=255)
  tCGACGAAGTGGGCGATATGCCACTGGAGTTACAg                                  <  1:9371117/35‑1 (MQ=255)
  tCGACGAAGTGGGCGATATGCCACTGGAGTTACAg                                  <  1:19549081/35‑1 (MQ=255)
  tCGACGAAGTGGGCGATATGCCACTGGAGTTACAg                                  <  1:16532227/35‑1 (MQ=255)
  tCGACGAAGTGGGCGATATGCCACTGGAGTTACAg                                  <  1:10833013/35‑1 (MQ=255)
  tCGACGAAGTGGGCGATATGCCACTGGAGTTACAg                                  <  1:6422011/35‑1 (MQ=255)
  tCGACGAAGTGGGCGATATGCCACTGGAGTTACAg                                  <  1:2103157/35‑1 (MQ=255)
  tCGACGAAGTGGGCGATATGCCACTGGAGTTACAg                                  <  1:13692990/35‑1 (MQ=255)
  tCGACGAAGTGGGCGATATGCCACTGGAGTTACAg                                  <  1:16154100/35‑1 (MQ=255)
  tCGACGAAGTGGGCGATATGCCACTGGAGTTACAg                                  <  1:13949181/35‑1 (MQ=255)
  tCGACGAAGTGGGCGATATGCCACTGGAGTTACAg                                  <  1:14120281/35‑1 (MQ=255)
   cgacgaAGTGGGCGATATGCCACTGGAGTTACAGc                                 <  1:14937248/35‑1 (MQ=255)
   cgacgaAGTGGGCGATATGCCACTGGAGTTACAGc                                 >  1:16255054/1‑35 (MQ=255)
   cgacgaAGTGGGCGATATGCCACTGGAGTTACAGc                                 <  1:19394150/35‑1 (MQ=255)
   cgacgaAGTGGGCGATATGCCACTGGAGTTACAGc                                 <  1:12260174/35‑1 (MQ=255)
   cgacgaAGTGGGCGATATGCCACTGGAGTTAAAgg                                 >  1:5213260/1‑34 (MQ=255)
    gacgaAGTGGGCGATATGCCACTGGAGTTACAGcc                                >  1:8785141/1‑35 (MQ=255)
    gacgaAGTGGGCGATATGCCACTGGAGTTACAGcc                                >  1:5981638/1‑35 (MQ=255)
     acgaAGTGGGCGATATGCCACTGGAGTTACAGCCg                               >  1:2194202/1‑35 (MQ=255)
     acgaAGTGGGCGATATGCCACTGGAGTTACAGCCg                               >  1:847973/1‑35 (MQ=255)
      cgaAGTGGGCGATATGCCACTGGAGTTACAGCCGa                              >  1:12226187/1‑35 (MQ=255)
      cgaAGTGGGCGATATGCCACTGGAGTTACAGCCGa                              >  1:441739/1‑35 (MQ=255)
      ataaccatatggatcgatttcccccaccCAGCCGa                              <  1:19013258‑M1/7‑1 (MQ=255)
       taaccatatggatcgatttcccccaccCAGCCGaa                             <  1:18615751‑M1/8‑1 (MQ=255)
       gaAGTGGGCGATATGCCACTGGAGTTACAGCCGaa                             >  1:1380332/1‑35 (MQ=255)
        aaGTGGGCGATATGCCACTGGAGTTACAGCCGAAg                            >  1:3432655/1‑35 (MQ=255)
        aaGTGGGCGATATGCCACTGGAGTTACAGCCGAAg                            >  1:5911493/1‑35 (MQ=255)
        aaGTGGGCGATATGCCACTGGAGTTACAGCCGAAg                            >  1:9281836/1‑35 (MQ=255)
          gTGGGCGATATGCCACTGGAGTTACAGCCGAAggt                          >  1:4706414/1‑33 (MQ=255)
          gTGGGCGATATGCCACTGGAGTTACAGCCGAAggt                          >  1:11541286/1‑33 (MQ=255)
           tGGGCGATATGCCACTGTAGTTACAGCCGAAGGtg                         >  1:14353138/1‑35 (MQ=37)
           tGGGCGATATGCCACTGGAGTTACAGCCGAAGtcg                         >  1:20301254/1‑33 (MQ=255)
           tGGGCGATATGCCACTGGAGTTACAGCCGAAGTtg                         >  1:10157496/1‑35 (MQ=255)
           tGGGCGATATGCCACTGGAGTTACAGCCGAAGGtg                         >  1:18686326/1‑35 (MQ=255)
            gggCGATATGCCACTGGAGTTACAGCCGAAGTtgc                        >  1:12846366/1‑35 (MQ=255)
            gggCGATATGCCACTGGAGTTACAGCCGAAGTtgc                        >  1:3390708/1‑35 (MQ=255)
            gggCGATATGCCACTGGAGTTACAGCCGAAGGtgc                        >  1:1552464/1‑35 (MQ=255)
              gCGATATGCCACTGGAGTTACAGCCGAAGGtgctg                      >  1:19051298/1‑35 (MQ=255)
               cGATATGCCACTGGAGTTACAGCCGAAGTtgctgc                     >  1:14770248/1‑35 (MQ=255)
                gATATGCCACTGGAGTTACAGCCGAAGTTGCTGCg                    >  1:13546930/1‑35 (MQ=255)
                gATATGCCACTGGAGTTACAGCCGAAGTTGCTGCg                    >  1:18847235/1‑35 (MQ=255)
                gATATGCCACTGGAGTTACAGCCGAAGTTGCTGCg                    >  1:5868220/1‑35 (MQ=255)
                gATATGCCACTGGAGTTACAGCCGAAGGTGCTTCg                    >  1:20432093/1‑35 (MQ=38)
                 atatGCCACTGGAGTTACAGCCGAAGTTGCTGCgg                   >  1:1197390/1‑34 (MQ=255)
                 atatGCCACTGGAGTTACAGCCGAAGTTGCTGCgg                   >  1:3719123/1‑34 (MQ=255)
                 atatGCCACTGGAGTTACAGCCGAAGGTGCTGCgt                   >  1:6175536/1‑35 (MQ=255)
                   atGCCACTGGAGTTACAGCCTAAGTTGCTGCgtgt                 >  1:16212891/1‑35 (MQ=255)
                   atGCCACTGGAGTTACAGCCGAAGTTGCTGCgtgt                 >  1:1816336/1‑35 (MQ=255)
                   atGCCACTGGAGTTACAGCCGAAGTTGCTGCgtgt                 >  1:4666484/1‑35 (MQ=255)
                   atGCCACTGGAGTTACAGCCGAAGTTGCTGCgtgt                 >  1:20314794/1‑35 (MQ=255)
                   atGCCACTGGAGTTACAGCCGAAGTTGCTGCgggt                 >  1:8421992/1‑35 (MQ=255)
                     gCCACTGGAGTTACAGCCGAAGGTGCTGCGTGTAt               >  1:16034370/1‑35 (MQ=255)
                      ccACTGGAGTTACATCCGAAGTTGCTGCGTGTAtt              >  1:11314240/1‑35 (MQ=255)
                      ccACTGGAGTTACAGCCGAAGTTGCTGCGTGTAtt              >  1:5430188/1‑35 (MQ=255)
                      ccACTGGAGTTACAGCCGAAGTTGCTGCGTGTAtt              >  1:17775711/1‑35 (MQ=255)
                      ccACTGGAGTTACAGCCGAAGTTGCTGCGTGTAtt              >  1:13075838/1‑35 (MQ=255)
                       cACTGGATTTACAGCCGAAGTTGCTGCGTGTATTg             >  1:2471419/1‑35 (MQ=255)
                        aCTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGc            >  1:15399224/1‑35 (MQ=255)
                         cccccccccCAGCCGAAGTTGCTGCGTGTATTGCa           >  1:11034453‑M1/10‑35 (MQ=255)
                         cTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCa           >  1:19902070/1‑35 (MQ=255)
                          tGGATTTACAGCCGAAGTTGCTGCGTGTATTGCAg          >  1:8178005/1‑35 (MQ=255)
                          tGGAGTTACAGCCGAAGTTGCTGCGGGTATTGCAg          >  1:7503234/1‑35 (MQ=255)
                          tGGAGCTACAGCCGAAGTTGCTGCGTGGTTTGCAg          >  1:15897271/1‑35 (MQ=25)
                          gcccccccCAGCCGAAGTTGCTGCGTGTATTGCAg          >  1:20130144‑M1/9‑35 (MQ=255)
                          ccccccccCAGCCGAAGTTGCTGCGTGTATTGCAg          >  1:7583785‑M1/9‑35 (MQ=255)
                           gccccccCAGCCGAAGTTGCTGCGTGTATTGCAgg         >  1:6666308‑M1/8‑35 (MQ=255)
                           cccccccCAGCCGAAGTTGCTGCGTGTATTGCAgg         >  1:7636819‑M1/8‑35 (MQ=255)
                           cccccccCAGCCGAAGTTGCTGCGTGTATTGCAgg         >  1:1977314‑M1/8‑35 (MQ=255)
                             cccccCAGCCGAAGTTGCTGCGTGTATTGCAGGaa       >  1:10455857‑M1/6‑35 (MQ=255)
                              gtccCAGCCGAAGTTGCTGCGTGTATTGCAGGAAc      >  1:14853295‑M1/5‑35 (MQ=255)
                              ccccCAGCCGAAGTTGCTGCGTGTATTGCAGGAAc      >  1:9537169‑M1/5‑35 (MQ=255)
                              ccccCAGCCGAAGTTGCTGCGTGTATTGCAGGAAc      >  1:16889909‑M1/5‑35 (MQ=255)
                              ccccCAGCCGAAGTTGCTGCGTGTATTGCAGGAAc      >  1:2714629‑M1/5‑35 (MQ=255)
                               ttACAGCCGAAGTTGCTGCGTGTATTGCAGGAACa     >  1:8250126/1‑35 (MQ=255)
                               ttACAGACGAAGTTGCTGCGTGTATTGCAGGAACa     <  1:17904441/35‑1 (MQ=255)
                               cccCAGCCGAAGTTGCTGCGTGTATTGCAGGAACa     >  1:10015394‑M1/4‑35 (MQ=255)
                               cccCAGCCGAAGTTGCTGCGTGTATTGCAGGAACa     >  1:13227504‑M1/4‑35 (MQ=255)
                                tACAGCCGAAGTTGCTGCGTGTATTGCAGGAAAAg    >  1:16337650/1‑35 (MQ=255)
                                ccCAGCCGAAGTTGCTGCGTGTATTGCAGGAACAg    >  1:6090207‑M1/3‑35 (MQ=255)
                                ccCAGCCGAAGTTGCTGCGTGTATTGCAGGAACAg    >  1:12678453‑M1/3‑35 (MQ=255)
                                 cCAGCCGAAGTTGCTGCGTGTATTGCAGGAACAgg   >  1:2850767‑M1/2‑35 (MQ=255)
                                 aCAGCCGAATTTGCTGCGTGTATTGCAGGAACatg   >  1:3863113/1‑33 (MQ=25)
                                 aCAGCCGAAGTTGCTGCGTGTATTGGAGGAACAgg   >  1:9231394/1‑35 (MQ=255)
                                 aCAGCCGAAGTTGCTGCGTGTATTGCAGGAACAgg   >  1:14603290/1‑35 (MQ=255)
                                  cAGCCGAAGTTGCTGCGTGTATTGCAGGGAAAggg  >  1:15117534/1‑34 (MQ=25)
                                  CAGCCGAAGTTGCTGCGTGTATTGCAGGGACaggg  <  1:629100‑M1/35‑2 (MQ=255)
                                  CAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGa  <  1:7236794‑M1/35‑1 (MQ=255)
                                  CAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGa  <  1:15827653‑M1/35‑1 (MQ=255)
                                  CAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGa  <  1:13136562‑M1/35‑1 (MQ=255)
                                  |                                  
CCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGA  >  REL606/2750631‑2750699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.