Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 547,700 Δ2,651 bp 100% IS1‑mediated [nmpC][ybcU] [nmpC], ybcR, ybcS, ybcT, [ybcU]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 546953–547700 550350 2651–3398 55 [48] [7] 94 [insB‑6]–[ybcU] [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, [ybcU]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 547699NA (NA)59 (0.570) 34/48 NT 93.7% noncoding (1/768 nt) IS1 repeat region
?REL606 550351 = 4 (0.040)coding (12/294 nt) ybcU predicted lipoprotein

CATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/547667‑547699
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATTTTTTTCATCTTATTATCCTGCATTGTTAA  >  REL606/550351‑550383
                                                                  
CATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                 <  1:670116/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                 >  1:10609978/1‑35
CATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                 <  1:561119/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                 <  1:4511867/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                 >  1:3799628/1‑35
CATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                 <  1:11746488/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                 >  1:3034328/1‑35
CATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                 >  1:2683632/1‑35
CATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                 <  1:20218424/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                 <  1:19090544/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                 <  1:16639672/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                 <  1:14457173/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                 <  1:14389154/35‑1
CATACACTAAATCAGTAAGTTGGCAGCATCACACA                                 <  1:9220841/35‑1
 ATACACTAAATCAGTAAGTTGGCAGCATCACCCAT                                >  1:19336272/1‑35
 ATACACTAAATCAGTAAGTTGGCAGCATCACCCAT                                >  1:6999817/1‑35
  TACACTAAATCAGTAAGTTGGCAGCATCACCCATg                               >  1:7082398/1‑34
  TACACTAAATCAGTAAGTTGGCAGCATCACCCATT                               >  1:4200401/1‑35
  TACACTAAATCAGTAAGTTGGCAGCATCACCCATT                               <  1:7148470/35‑1
  TACACTAAATCAGTAAGTTGGCAGCATCACCCATT                               <  1:6522136/35‑1
   ACACTAAATCAGTAAGTTGGCAGCATCACCCATTT                              <  1:477804/35‑1
   ACACTAAATCAGTAAGTTGGCAGCATCACCCATTT                              <  1:10049345/35‑1
    CACTAAATCAGTAAGTTGGCAGCATCACCCATTTT                             <  1:9063694/35‑1
    CACTAAATCAGTAAGTTGGCAGCATCACCCATTTT                             >  1:2350079/1‑35
    CACTAAATCAGTAAGTTGGCAGCATCACCCATTTT                             <  1:17801198/35‑1
      CTAAATCAGTAAGTTGGCAGCATCACCCATTTTTT                           <  1:11218900/35‑1
      CTAAATCAGTAAGTTGGCAGCATCACCCATTTTTT                           >  1:6648175/1‑35
       TAAATCAGTAAGTTGGCAGCATCAGCCATTTTTTT                          <  1:15599576/35‑1
       TAAATCAGTAAGTTGGCAGCATCACCCATTTTTTT                          <  1:5470538/35‑1
       TAAATCAGTAAGTTGGCAGCATCACCCATTTTTTT                          <  1:18708835/35‑1
        AAATCAGTAAGTTGGCAGCATCACCCATTTTTTTC                         >  1:20396147/1‑35
        AAATCAGTAAGTTGGCAGCATCACCCATTTTTTTC                         >  1:12602237/1‑35
         AATCAGTAAGTTGGCAGCATCACCCATTTTTTTCA                        >  1:12250178/1‑35
         AATCAGTAAGTTGGCAGCATCACCAATTTTTTTCA                        <  1:12836556/35‑1
          ATCAGTAAGTTGGCAGCATCACCCATTTTTTTCAT                       <  1:1104505/35‑1
          ATCAGTAAGTTGGCAGCATCACCCATTTTTTTCAT                       >  1:18133760/1‑35
          ATCAGTAAGTTGGCAGCATCACCCATTTTTTTCAT                       <  1:1432407/35‑1
           TCAGTAAGTTGGCAGCATCACCCATTTTTTTCATC                      >  1:4044685/1‑35
           TCAGTAAGTTGGCAGCATCACCCATTTTTTTCATC                      <  1:4882655/35‑1
           TCAGTAAGTTGGCAGCATCACCCATTTTTTTCATC                      >  1:18967033/1‑35
           TCAGTAAGTTGGCAGCATCACCCATTTTTTTCATC                      >  1:10598480/1‑35
           TCAGTAAGTTGGCAGCATCACCCATTTTTTTCATC                      >  1:6910058/1‑35
            CAGTAAGTTGGCAGCATCACCCATTTTTTTCATCT                     <  1:19044861/35‑1
            CAGTAAGTTGGCAGCATCACCCATTTTTTTCATCT                     <  1:653772/35‑1
            CAGTAAGTTGGCAGCATAACCCATTTTTTTCATCT                     <  1:6249004/35‑1
             AGTAAGTTTGCAGCATCACCCATTTTTTTCATCTT                    >  1:1699091/1‑35
             AGTAAGTTGGCAGCATCACCCATTTTTTTCATCTT                    <  1:12901107/35‑1
               TAAGTTGGCAGCATCACCCATTTTTTTCATCTTAT                  >  1:13470782/1‑35
               TAAGTTGGCAGCATAACCCATTTTTTTCATCTTAT                  <  1:8056764/35‑1
                AAGTTGGCAGCATCACCCATTTTTTTCATCTTATT                 >  1:1398461/1‑35
                AAGTTGGCAGCATCACCCATTTTTTTCATCTTATT                 <  1:3673967/35‑1
                AAGTTGGCAGCATCACCCATTTTTTTCATCTTATT                 >  1:2861219/1‑35
                 AGTTGGCAGCATCACCCATTTTTTTCATCTTATTA                >  1:6748301/1‑35
                 AGTTGGCAGCATCACCCATTTTTTTCATCTTATTA                >  1:6731446/1‑35
                 AGTTGGCAGCATCACCCATTTTTTTCATCTTATTA                >  1:2798034/1‑35
                  GTTGGCAGCATCACCCATTTTTTTCATCTTATTAT               >  1:14832810/1‑35
                  GTTGGCAGCATCACCCATTTTTTTCATCTTATTAT               <  1:6050896/35‑1
                  GTTGGCAGCATCACCCATTTTTTTCATCTTATTAT               <  1:3845981/35‑1
                    TGGCAGCATCACCCATTTTTTTCATCTTATTATCC             >  1:2571021/1‑35
                    TGGCAGCATCACCCATTTTTTTCATCTTATTATCC             <  1:18849183/35‑1
                     GGCAGCATCACCCATTTTTTTCATCTTATTATCCT            <  1:803152/35‑1
                     GGCAGCATCACCCATTTTTTTCATCTTATTATCCT            >  1:14876006/1‑35
                     GGCAGCATCACCCATTTTTTTCATCTTATTATCCT            <  1:20201317/35‑1
                     GGCAGCATCACCCATTTTTTTCATCTTATTATCCT            >  1:4022064/1‑35
                      GCAGCATCACCCATTTTTTTCATCTTATTATCCTG           >  1:14404573/1‑35
                      GCAGCATCACCCATTTTTTTCATCTTATTATCCTG           <  1:3733042/35‑1
                      GCAGCATCACCCATTTTTTTCATCTTATTATCCTG           >  1:15302191/1‑35
                      GCAGCATCACCCATTTTTTTCATCTTATTATCCTG           <  1:18509552/35‑1
                       CAGCATCACCCATTTTTTTCATCTTATTATCCTGC          >  1:8293703/1‑35
                       CAGCATCACCCATTTTTTTCATCTTATTATCCTGC          <  1:7342326/35‑1
                       CAGCATCACCAATTTTTTTCATCTTATTATCCTGC          <  1:741897/35‑1
                        AGCATCACCCATTTTTTTCATCTTATTATCCTGCA         >  1:5623083/1‑35
                        AGCATCACCCATTTTTTTCATCTTATTATCCTGCA         >  1:5563768/1‑35
                          CATCACCCATTTTTTTCATCTTATTATCCTGCATT       <  1:4314625/35‑1
                          CATCACCCATTTTTTTCATCTTATTATCCTGCATT       <  1:15149477/35‑1
                          CATCACCCATTTTTTTCATCTTATTATCCTGCATT       <  1:3420287/35‑1
                          CATCACCCATTTTTTTCATCTTATTATCCTGCATT       >  1:1258776/1‑35
                          CATCACCCATTTTTTTCATCTTATTATCCTGCATT       <  1:13213322/35‑1
                          CATCACCCATTTTTTTCATCTTATTATCCTGCATT       <  1:7238959/35‑1
                           catACCCATTTTTTTCATCTTATTATCCTGCATTG      <  1:465853/32‑1
                           ATCACCCATTTTTTTCATCTTATTATCCTGCATTG      <  1:12131796/35‑1
                           ATCACCCATTTTTTTCATCTTATTATCCTGCATTG      <  1:2245245/35‑1
                            TCACGCATTTTTTTCATCTTATTATCCTGCATTGT     >  1:14960340/1‑35
                             CACCCATTTTTTTCATCTTATTATCCTGCATTGTT    <  1:5612833/35‑1
                               CCCATTTTTTTCATCTTATTATCCTGCATTGTTAA  <  1:2873911/35‑1
                               CCCATTTTTTTCATCTTATTATCCTGCATTGTTAA  <  1:10867519/35‑1
                                                                  
CATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/547667‑547699
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATTTTTTTCATCTTATTATCCTGCATTGTTAA  >  REL606/550351‑550383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.