New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3744020 | 103 (1.000) | 12 (0.160) | 5/36 | NT | 18.0% | coding (300/807 nt) | waaP | kinase that phosphorylates core heptose of lipopolysaccharide |
? | REL606 | = 3861481 | 32 (0.420) | coding (1109/1617 nt) | yieC | carbohydrate‑specific outer membrane porin, cryptic |
Only 100 of 188 total aligned reads displayed.
AGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCAAATGCCACCCCATACATAGTATCAACGCCGACAT > REL606/3743986‑3744054 | aGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCA > 1:14132418‑M1/1‑35 (MQ=255) aGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCA < 1:20400485‑M1/35‑1 (MQ=255) aGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCA < 1:7632299‑M1/35‑1 (MQ=255) ggTTCTGGTCAGCGGATTAATACCTTTTTCGCCaa > 1:11880463/1‑35 (MQ=255) gTTCTGGTCAGCGGATTAATACCTTTTTCGCCaaa < 1:12958/35‑1 (MQ=255) gTTCTGGTCAGCGGATTAATACCTTTTTCGCCaaa < 1:9260573/35‑1 (MQ=255) gTTCTGGTCAGCGGATTAATACCTTTTTCGCCaaa < 1:11796782/35‑1 (MQ=255) ttCTGGTCAGCGGATTAATACCTTTTTCGCCAAAt < 1:12548905/35‑1 (MQ=255) ttCTGGTCAGCGGATTAATACCTTTTTCGCCAAAt < 1:580887/35‑1 (MQ=255) tCTGGTCAGCGGATTAATACCTTTTTCGCCAAATg > 1:4848320/1‑35 (MQ=255) tCTGGTCAGCGGATTAATACCTTTTTCGCCAAATg > 1:9455733/1‑35 (MQ=255) cTGGTCAGCGGATTAATACCTTTTTCGCCAAATGc < 1:297501/35‑1 (MQ=255) cTGGTCAGCGGATTAATACCTTTTTCGCCAAATGc > 1:9278162/1‑35 (MQ=255) tGGTCAGCGGATTAATACCTTTTTCGCCAAATGcc < 1:7984727/35‑1 (MQ=255) tGGTCAGCGGATTAATACCTTTTTCGCCAAATGcc < 1:18237405/35‑1 (MQ=255) tGGTCAGCGGATTAATACCTTTTTCGCCAAATGcc < 1:17917917/35‑1 (MQ=255) ggTCAGCTGATTAATACCTTTTTCGCCAAATGCCa > 1:14814416/1‑35 (MQ=255) gTCAGCGGATTAATACCTTTTTCGCCAAATGCCAc < 1:4913795/35‑1 (MQ=255) gTCAGCGGATTAATACCTTTTTCGCCAAATGCCAc > 1:3641324/1‑35 (MQ=255) gTCAGCGGATTAATACCTTTTTCGCCAAATGCCAc < 1:6415502/35‑1 (MQ=255) tCAGCGGATTAATACCTTTTTCGCCAAATGCCAcn < 1:10177733/35‑1 (MQ=255) cAGCGGATTAATACCTTTTTCGCCAAATGCCAccc < 1:8245581/35‑1 (MQ=255) cAGCGGATTAATACCTTTTTCGCCAAATGCCAccc > 1:8345568/1‑35 (MQ=255) cAGCGGATTAATACCTTTTCCGCCAAATGCCAccc > 1:4698449/1‑35 (MQ=255) aGCGGATTAATACCTTTTTCGCCAAATGCCAcccc > 1:16242592/1‑35 (MQ=255) gCGGATTAATACCTTTTTCGCCAAATGCCACCCca < 1:9805997/35‑1 (MQ=255) gCGGATTAATACCTTTTTCGCCAAATGCCACCCca > 1:10879686/1‑35 (MQ=255) cGGATTAATACCTTTTTCGCCAAATGCCACCCcat > 1:15068570/1‑35 (MQ=255) cGGATTAATACCTTTTTCGCCAAATGCCACCCcat > 1:6803893/1‑35 (MQ=255) aTTAATACCTTTTTCGCCAAATGCCACCCcataca > 1:8979483/1‑35 (MQ=255) ttAATACCTTTTTCGCCAAATGCCACCCcatacat < 1:13364321/35‑1 (MQ=255) ttAATACCTTTTTCGCCAAATGCCACCCcatacat < 1:4324046/35‑1 (MQ=255) ttAATACCTTTTTCGCCAAATGCCACCCcatacat > 1:16305240/1‑35 (MQ=255) ttAATACCTTTTTCGCCAAATGCCACCCcatacat < 1:17088200/35‑1 (MQ=255) caaataCCTTTTTCGCCAgtaactttggccgttat < 1:18448402‑M1/33‑18 (MQ=255) tAATACCTTTTTCGCCAAATGCCACCCcatacata < 1:4396261/35‑1 (MQ=255) tAATACCTTTTTAGCCAAATGCCACCCcatacata > 1:18608333/1‑35 (MQ=255) aaatACCTTTTTCGCCAgtaactttggccgttatg < 1:19699406‑M1/34‑19 (MQ=255) aaatAACTTTTTCGCCAgtaactttggccgttatg < 1:3771477‑M1/34‑19 (MQ=255) aaTACTTTTTTCGCCAgtaactttggccgttatgc < 1:8569694‑M1/35‑20 (MQ=255) aaTACCTTTTTCGCCAAATGCCACCCcatacataa > 1:9900517/1‑34 (MQ=255) aaTACCTTTTTCGCCAAATGCCACCCCATACATAg < 1:7358923/35‑1 (MQ=255) aaTACCTTTTTCGCCAAATGCCACCCCATACATAg < 1:20459908/35‑1 (MQ=255) aaTACCTTTTTCGCCAAATGCCACCCCATACATAg < 1:5927112/35‑1 (MQ=255) aaTACCTTTTTCGCCAAATGCCACCCCATACATAg < 1:16787048/35‑1 (MQ=255) aTACCTTTTTCGCCAgtaactttggccgttatgct < 1:5219984‑M1/35‑21 (MQ=255) aTACCTTTTTCGCCAAATGCCACCCCATACATAGt > 1:12831093/1‑35 (MQ=255) aTACCTTTTTCGCCAAATGCCACCCCATACATAGt < 1:16915869/35‑1 (MQ=255) tACCTTTTTCGCCAAATGCCACCCCATACATAGTa > 1:11460741/1‑35 (MQ=255) tACCTTTTTCGCCAAATGCCACCCCATACATAGTa < 1:3269319/35‑1 (MQ=255) tACCTTTTTCGCCAAATGCCACCCCATACATAGTa < 1:13606290/35‑1 (MQ=255) tACCTTTTTCGCCAAATGCCACCCCATACATAGTa > 1:10188751/1‑35 (MQ=255) tACCTTTTTCGCCAAATGCCACCCCATACATAGTa > 1:12665288/1‑35 (MQ=255) tACCTCTTTCGCCAgtaactttggccgttatgctg < 1:5926643‑M1/35‑22 (MQ=255) aacttTTTCGCCAgtaactttggccgttatgctgg < 1:17470844‑M1/33‑23 (MQ=255) aCCTTTTTCGCCAgtaactttggccgttatgctgg < 1:6103116‑M1/35‑23 (MQ=255) aCCTTTTTCGCCAAATGCCACCCCATACATAGTAt < 1:15350349/35‑1 (MQ=255) aCCTTTTTCGCCAAATGCCACCCCATACATAGTAt < 1:2703299/35‑1 (MQ=255) aCCTTTTTCGCCAAATGCCACCCCATACATAGTAt < 1:4515762/35‑1 (MQ=255) aCCTTTTTCGCCAAATGCCACCCCATACATAGTAt < 1:12404701/35‑1 (MQ=255) aCCTCTTTCGCCAgtaactttggccgttatgctgg < 1:9666948‑M1/35‑23 (MQ=255) ccTTTTTCGCCAAATGCCACCCCATACATAGTATc < 1:4550071/35‑1 (MQ=255) ccTTTTTCGCCAAATGCCACCCCATACATAGTATc > 1:556486/1‑35 (MQ=255) ccTTTTTCGCCAAATGCCACCCCATACATAGTATc > 1:17619839/1‑35 (MQ=255) ctctttcgcCAgtaactttggccgttatgctggcg < 1:10199160‑M1/32‑25 (MQ=255) cTTTTTCGCCAgtaactttggccgttatgctggcg < 1:7147422‑M1/35‑25 (MQ=255) cTTTTTCGCCAAATGCCACCCCATACATAGTATCa < 1:3849845/35‑1 (MQ=255) cTTTTTCGCCAAATGCCACCCCATACATAGTATCa < 1:1104542/35‑1 (MQ=255) cTTTTTCGCCAAATGCCACCCCATACATAGTATCa < 1:120257/35‑1 (MQ=255) tttttCGCCAAATGCCACCCCATACATAGTATCaa < 1:9839656/35‑1 (MQ=255) ttttCGCCAgtaactttggccgttatgctggcgca < 1:17317863‑M1/35‑27 (MQ=255) ttttCGCCAAATGCCACCCCATACATAGTATCAAc < 1:3213295/35‑1 (MQ=255) ttttCGCCAAATGCCACCCCATACATAGTATCAAc < 1:19018468/35‑1 (MQ=255) tttCGCCAgtaactttggccgttatgctggcgcaa < 1:13961320‑M1/35‑28 (MQ=255) tttCGCCAgtaactttggccgttatgctggcgcaa < 1:13106335‑M1/35‑28 (MQ=255) tttCGCCAAATGCCACCCCATACATAGTATCAACg < 1:1846907/35‑1 (MQ=255) ttCGCCAgtaactttggccgttatgctggcgcaag < 1:19282223‑M1/35‑29 (MQ=255) ttCGCCAAATGCCACCCCATACATAGTATCAACGc > 1:1081018/1‑35 (MQ=255) tCGCCAgtaactttggccgttatgctggcgcaagt < 1:5336511‑M1/35‑30 (MQ=255) tCGCCAAATGCCACCCCATACATAGTATCAACGcc > 1:14076987/1‑35 (MQ=255) tCGCCAAATGCCACCCCATACATAGTATCAACGcc > 1:9801697/1‑35 (MQ=255) tCGCCAAATGCCACCCCATACATAGTATCAACGcc < 1:16596445/35‑1 (MQ=255) cGCCAgtaactttggccgttatgctggcgcaagtc < 1:15704406‑M1/35‑31 (MQ=255) cGCCAAATGCCACCCCATACATAGTATCAACGcct > 1:2438979/1‑34 (MQ=255) cGCCAAATGCCACCCCATACATAGTATCAACGCCg < 1:18891353/35‑1 (MQ=255) cGCCAAATGCCACCCCATACATAGTATCAACGCCg < 1:16172359/35‑1 (MQ=255) gCCAgtaactttggccgttatgctggcgcaagtcc < 1:7624693‑M1/35‑32 (MQ=255) gCCAAATGCCCCCCCATACATAGTATCAACGCCGa < 1:15730756/35‑1 (MQ=255) gCCAAATGCCACCCCATACATAGTATCAACGCCGa < 1:2398591/35‑1 (MQ=255) gCCAAATGCCACCCCATACATAGTATCAACGCCGa < 1:8155131/35‑1 (MQ=255) cccAAAAGCCCCCCCATACATATTATCAACGCCGa < 1:20118539/34‑1 (MQ=25) cAgtaactttggccgttatgctggcgcaagtccat < 1:9198563‑M1/35‑34 (MQ=255) cAgtaactttggccgttatgctggcgcaagtccat < 1:3366782‑M1/35‑34 (MQ=255) cAAATTCCACCCCATACATAGTATCAACGCCGACa > 1:2215703/1‑35 (MQ=255) cAAATGCCACCCCATACATAGTATCAACGCCGACa > 1:7039417/1‑35 (MQ=255) agtaactttggccgttatgctggcgcaagtccatt < 1:16946738‑M1/35‑35 (MQ=255) agtaactttggccgttatgctggcgcaagtccatt < 1:13255478‑M1/35‑35 (MQ=255) agtaactttggccgttatgctggcgcaagtccatt < 1:10525088‑M1/35‑35 (MQ=255) aaaTGCCACCCCATACATAGTATCAACGCCGACAt < 1:2756301/35‑1 (MQ=255) aaaTGCCACCCCATACATAGTATCAACGCCGACAt > 1:2037713/1‑35 (MQ=255) | AGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCAAATGCCACCCCATACATAGTATCAACGCCGACAT > REL606/3743986‑3744054 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |