New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3780471 =81 (0.790)7 (0.120) 4/28 NT 14.0% coding (503/1359 nt) ECB_03520 conserved hypothetical protein
?REL606 = 4600662 39 (0.650)coding (33/606 nt) osmY periplasmic protein

Only 100 of 209 total aligned reads displayed.

GGTGAGTGGTTTCCAAAATCTGAACGTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTCTATCGGT  >  REL606/3780437‑3780505
                                  |                                  
ggTGAGTGGTTTCCAAAATCTGAACGTCCTGTtgc                                    >  1:14479157/1‑35 (MQ=255)
ggTGAGTGGTTTCCAAAATCTGAACGTCCTGTtgc                                    >  1:7096886/1‑35 (MQ=255)
ggTGAGTGGTTTCCAAAATCTGAACGTCCTGTtgc                                    <  1:6427386/35‑1 (MQ=255)
gatgactatgacaagactgaagatttcgaaaactc                                    <  1:19455258‑M1/1‑1 (MQ=255)
gatgactatgacaagactgaagatttcgaaaactc                                    <  1:1920423‑M1/1‑1 (MQ=255)
 atgactatgacaagactgaagatttcgaaaactct                                   >  1:13694082‑M1/34‑35 (MQ=255)
 atgactatgacaagactgaagatttcgaaaactct                                   <  1:1325700‑M1/2‑1 (MQ=255)
 atgactatgacaagactgaagatttcgaaaactct                                   >  1:6659907‑M1/34‑35 (MQ=255)
 atgactatgacaagactgaagatttcgaaaactct                                   >  1:606854‑M1/34‑35 (MQ=255)
 atgactatgacaagactgaagatttcgaaaactct                                   <  1:17289871‑M1/2‑1 (MQ=255)
 atgactatgacaagactgaagatttcgaaaactct                                   <  1:15585503‑M1/2‑1 (MQ=255)
  tgactatgacaagactgaagatttcgaaaactctg                                  >  1:16271770‑M1/33‑35 (MQ=255)
  tgactatgacaagactgaagatttcgaaaactctg                                  >  1:20405193‑M1/33‑35 (MQ=255)
  tGAGTGGTTTCCAAAATCTGAACGTCCTGTtgctg                                  >  1:3089822/1‑35 (MQ=255)
  tGAGTGGTTTCCAAAATCTGAACGTCCTGTtgctg                                  >  1:19015793/1‑35 (MQ=255)
   gactatgacaagactgaagatttcgaaaactctgc                                 <  1:15705951‑M1/4‑1 (MQ=255)
   gactatgacaagactgaagatttcgaaaactctgc                                 <  1:844288‑M1/4‑1 (MQ=255)
   gactatgacaagactgaagatttcgaaaactctgc                                 >  1:20292635‑M1/32‑35 (MQ=255)
    actatgacaagactgaagatttcgaaaactctgct                                <  1:7997120‑M1/5‑1 (MQ=255)
    actatgacaagactgaagatttcgaaaactctgct                                >  1:511890‑M1/31‑35 (MQ=255)
    actatgacaagactgaagatttcgaaaactctgct                                >  1:12482427‑M1/31‑35 (MQ=255)
     ctatgacaagactgaagatttcgaaaactctgctg                               <  1:10498160‑M1/6‑1 (MQ=255)
     ctatgacaagactgaagatttcgaaaactctgctg                               <  1:20255057‑M1/6‑1 (MQ=255)
     ctatgacaagactgaagatttcgaaaactctgctg                               >  1:56710‑M1/30‑35 (MQ=255)
      tatgacaagactgaagatttcgaaaactCTgctgg                              >  1:1832209‑M1/29‑35 (MQ=255)
      tatgacaagactgaagatttcgaaaactCTgctgg                              <  1:19068818‑M1/7‑1 (MQ=255)
      tatgacaagactgaagatttcgaaaactCTgctgg                              >  1:5745571‑M1/29‑35 (MQ=255)
      tatgacaagactgaagatttcgaaaactCTgctgg                              >  1:17503288‑M1/29‑35 (MQ=255)
      tatgacaagactgaagatttcgaaaactCTgctgg                              <  1:16851481‑M1/7‑1 (MQ=255)
      tGGTTTCCAAAATCTGAACGTCCTGTTGCTgctgg                              >  1:3371810/1‑35 (MQ=255)
       ggTTTCCAAAATCTGAACGTCCTGTTGCTgttggc                             <  1:18565299/35‑1 (MQ=255)
       ggTTTCCAAAATCTGAACGTCCTGTTGCTgctggc                             >  1:8395952/1‑35 (MQ=255)
       ggTTTCCAAAATCTGAACGTCCTGTTGCTgctggc                             <  1:17831944/35‑1 (MQ=255)
       atgacaagactgaagatttcgaaaactCTgctggc                             >  1:10811749‑M1/28‑35 (MQ=255)
       atgacaagactgaagatttcgaaaactCTgctggc                             <  1:19901730‑M1/8‑1 (MQ=255)
       atgacaagactgaagatttcgaaaactCTgctggc                             <  1:5390168‑M1/8‑1 (MQ=255)
       atgacaagactgaagatttcgaaaactCTgctggc                             <  1:2440542‑M1/8‑1 (MQ=255)
        tgacaagactgaagatttcgaaaactCTgctggct                            <  1:12328112‑M1/9‑1 (MQ=255)
        tgacaagactgaagatttcgaaaactCTgctggct                            >  1:15993667‑M1/27‑35 (MQ=255)
        tgacaagactgaagatttcgaaaactCTgctggct                            <  1:9357111‑M1/9‑1 (MQ=255)
        tgacaagactgaagatttcgaaaactCTgctggct                            <  1:8048150‑M1/9‑1 (MQ=255)
        gTTTCCAAAATCTGAACGTCCTGTTGCTgctggct                            >  1:10985125/1‑35 (MQ=255)
        gTTTCCAAAATCTGAACGTCCTGTTGCTgctggct                            <  1:19131187/35‑1 (MQ=255)
        gTTTCCAAAATCTGAACGTCCTGTTGCTgctggct                            <  1:16953414/35‑1 (MQ=255)
        gTTTCCAAAATCTGAACGTCCTGTTGCTgctggct                            <  1:7785406/35‑1 (MQ=255)
         tttCCAAAATCTGACCGTCCTGTTGCTgctggctg                           <  1:14816525/35‑1 (MQ=255)
         tttCCAAAATCTGAACGTCCTGTTGCTgctggctg                           <  1:5046324/35‑1 (MQ=255)
         gacaggactgaagatttcgaaaactCTgctggctg                           >  1:3899591‑M1/26‑35 (MQ=255)
         gacaagactgaagctttcgaaaactCTgctggctg                           <  1:2475813‑M1/10‑1 (MQ=255)
         gacaagactgaagatttcgaaaactCTgctggctg                           <  1:18243772‑M1/10‑1 (MQ=255)
         gacaagactgaagatttcgaaaactCTgctggctg                           <  1:11814685‑M1/10‑1 (MQ=255)
         gacaagactgaagatttcgaaaactCTgctggctg                           >  1:15333603‑M1/26‑35 (MQ=255)
         gacaagactgaagatttcgaaaactCTgctggctg                           <  1:12812419‑M1/10‑1 (MQ=255)
         gacaagactgaagacttcgaaaactCTgctggctg                           <  1:15973394‑M1/10‑1 (MQ=255)
          ttCCAAAATCTGAACGTCCTGTTGCTGctggctgg                          <  1:6636380/35‑1 (MQ=255)
          acaatactgaagatttcgaaaactCTGctggctgg                          <  1:12195037‑M1/11‑1 (MQ=255)
          acaagactgaagatttcgaaaactCTGctggctgg                          <  1:8659950‑M1/11‑1 (MQ=255)
          acaagactgaagatttcgaaaactCTGctggctgg                          <  1:6886282‑M1/11‑1 (MQ=255)
           tCCAAAATCTGAACGTCCTGTTGCTGCTGGCTggg                         >  1:7681819/1‑35 (MQ=255)
            ccAAAATCTGAACGTCCTGTTGCTGCTGGCTgggg                        >  1:8516916/1‑34 (MQ=255)
            ccAAAATCTGAACGTCCTGTTGCTGCTGGCTGGGc                        <  1:4417159/35‑1 (MQ=255)
            aagactgaagatttcgaaaactCTGCTGGCtgggg                        <  1:18277884‑M1/13‑2 (MQ=255)
            aagactgaagatttcgaaaactCTGCTGGCtgggg                        <  1:14076015‑M1/13‑2 (MQ=255)
            aagactgaagatttcgaaaactCTGCTGGCtggga                        <  1:13042625‑M1/13‑2 (MQ=255)
             agactgaagatttcgaaaactCTGCTGGctggggg                       <  1:4682437‑M1/14‑3 (MQ=255)
              gactgaagatttcgaaaactCTGCTGgctggggtg                      <  1:7533890‑M1/15‑4 (MQ=255)
              aaaaTCTGAACGTCCTGTTGGTGCTGGCTGGGCgg                      <  1:4994792/35‑1 (MQ=255)
              aaaaTCTGAACGTCCTGTTGCTGCTGGCTGGGCgg                      <  1:9025778/35‑1 (MQ=255)
               actgaagatttcgaaaactCTGCTGGCTGGGAggg                     <  1:2795779‑M1/16‑1 (MQ=255)
               aaaTCTGAACGTCCTGTTGCTGCTGGCTGGGCgtg                     >  1:16396290/1‑33 (MQ=255)
               aaaTCTGAACGTCCTGTTGCTGCTGGCTGGGCggg                     <  1:17791496/35‑1 (MQ=255)
               aaaTCTGAACGTCCTGTTGCTGCTGGCTGGGCggg                     <  1:13509784/35‑1 (MQ=255)
                ctgaagatttcgaaaactCTGCTGGCTGGGGGGgt                    <  1:7036776‑M1/17‑1 (MQ=255)
                aaTCTGAACGTCCTGTTGCTGCTGGCTGGGCGGgt                    <  1:9700918/35‑1 (MQ=255)
                aaTCTGAACGTCCTGTTGCTGCTGGCTGGGCGGgt                    <  1:11194403/35‑1 (MQ=255)
                 tgaagatttcgaaaactCTGCTGGCTGGGGGGgtg                   <  1:5795042‑M1/18‑1 (MQ=255)
                 aTCTGAGCGTCCTGTTGCTGCTGGCTGGGCGGgtg                   <  1:829892/35‑1 (MQ=255)
                  tcagAACGTCCTGTTGCTGCTGGCTGGGCGGgtgt                  <  1:18070570/32‑1 (MQ=255)
                   cTGAACGTCCTGTTGCTTCTGGCTGGGCGGGGGTc                 >  1:15220966/1‑35 (MQ=37)
                    ttaaCGTCCTGTTGCTGCTGGCTGGGGGGGGGTCg                >  1:4145517/3‑35 (MQ=25)
                    tGAACGTCCTGTTGCTGCTGTCTGGGGGGGGGTCg                >  1:20043974/1‑35 (MQ=25)
                    tGAACGTCCTGTTGCTGATGGCTGGGCGGGTGTCg                <  1:16587295/35‑1 (MQ=255)
                     gagcGTCCTGTTGCTGCTGGCTGGGCGGGTGTCgg               <  1:28367/32‑1 (MQ=255)
                     gAACGTCCTGTTGCTGCTGGCTGGGGGGGGGGCgg               >  1:12705063/1‑35 (MQ=25)
                     gAACGTCCTGTTGCTGCTGGCTGGGCGGGTGTCgg               <  1:4875685/35‑1 (MQ=255)
                      aaCGTCCTTTTGCTGCTGGCTGGGCGGGGGTCggg              >  1:359453/1‑34 (MQ=37)
                      aaCCTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGt              <  1:3160056/35‑1 (MQ=255)
                        cGTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGttt            <  1:10481491/35‑1 (MQ=255)
                        cGTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGttt            <  1:15275348/35‑1 (MQ=255)
                         gTCCTGTTGCTGCTGGCTGGGCGGGGGGCGGtgtt           >  1:2189729/1‑35 (MQ=25)
                          tCCTGTTGCTGCTGGCTGGGCGGGTGTCGGttttt          <  1:12110906/35‑1 (MQ=255)
                          tCCTGTTGCTGCTGGCTGGGCGGGTGTCGGttttt          <  1:17337698/35‑1 (MQ=255)
                           ccTGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTc         <  1:6139480/35‑1 (MQ=255)
                           ccTGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTc         <  1:10055160/35‑1 (MQ=255)
                             tGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTCTa       <  1:19609808/35‑1 (MQ=255)
                                tgctgcTGGCTGGGCGGGTGTCGGTTTTTCTATCg    <  1:4348893/35‑1 (MQ=255)
                                 gctgctGGCTGGGCGGGTGTCGGTTTTTCTATCgg   <  1:9492149/35‑1 (MQ=255)
                                  CTGCTGGCTGGGCGGGTGTCGGTTTTTCTATCGGt  >  1:11435585‑M1/1‑35 (MQ=255)
                                  CTGCTGGCTGGGCGGGTGTCGGTTTTTCTATCGGt  >  1:4115731‑M1/1‑35 (MQ=255)
                                  CTGCTGGCTGGGCGGGTGTCGGTTTTTCTATCGGt  >  1:10180248‑M1/1‑35 (MQ=255)
                                  |                                  
GGTGAGTGGTTTCCAAAATCTGAACGTCCTGTTGCTGCTGGCTGGGCGGGTGTCGGTTTTTCTATCGGT  >  REL606/3780437‑3780505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.