New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1306327 =87 (0.850)9 (0.140) 3/30 NT 15.9% intergenic (‑88/+283) cls/kch cardiolipin synthetase/voltage‑gated potassium channel
?REL606 = 3884923 41 (0.640)coding (1072/1890 nt) gidA glucose‑inhibited division protein A

Only 100 of 129 total aligned reads displayed.

CCAGCAAAGAACAGCCCCTGGATAAACTTGCTCTCCAGCGTCGGTTTCAGGTCGCGAGGATCGAAGAA  >  REL606/3884889‑3884956
                                  |                                 
 cAGCAAAGAACAGCCCCTGGATAAACTTGCTCTCc                                  <  1:2061972‑M2/35‑2 (MQ=255)
 cAGCAAAGAACAGCCCCTGGATAAACTTGCTCTCc                                  <  1:17613835‑M2/35‑2 (MQ=255)
 cAGCAAAGAACAGCCCCTGGATAAACTTGCTCTCc                                  <  1:10053639‑M2/35‑2 (MQ=255)
  aGCAAAGAACAGCCCCTGGATAAACTTGCTCTCca                                 <  1:15597200‑M2/35‑3 (MQ=255)
  aGCAAAGAACAGCCCCTGGATAAACTTGCTCTCca                                 <  1:13159320‑M2/35‑3 (MQ=255)
   gCAAAGAACAGCCCCTGGATAAACTTGCTCTCcag                                <  1:20197864‑M2/35‑4 (MQ=255)
    cAAAGAACAGCCCCTGGATAAACTTGCTCTCcagc                               <  1:11525482‑M2/35‑5 (MQ=255)
    cAAAGAACAGCCCCTGGATAAACTTGCTCTCcagc                               <  1:12894880‑M2/35‑5 (MQ=255)
     aaaGCACAGCCCCTGGATAAACTTGCTCTCcagcg                              <  1:5788795‑M2/35‑6 (MQ=255)
     aaaGAACAGCCCCTGGATAAACTTGCTCTCcagcg                              <  1:20535859‑M2/35‑6 (MQ=255)
      aaGAACAGCCCCTGGATAAACTTGCTCTCcagcgt                             <  1:5661275‑M2/35‑7 (MQ=255)
      aaGAACAGCCCCTGGATAAACTTGCTCTCcagcgt                             <  1:11589656‑M2/35‑7 (MQ=255)
      aaGAACAGCCCCTGGATAAACTTGCTCTCcagcgt                             <  1:8205198‑M2/35‑7 (MQ=255)
      aaGAACAGCCCCTGGATAAACTTGCTCTCcagcgt                             <  1:20103935‑M2/35‑7 (MQ=255)
       aGAACAGCCCCTGGATAAACTTGCTCTCcagcgtc                            <  1:7032122‑M2/35‑8 (MQ=255)
       aGAACAGCCCCTGGATAAACTTGCTCTCcagcgtc                            <  1:3054985‑M2/35‑8 (MQ=255)
        gAACAGCCCCTGGATAAACTTGCTCTCcagcgtcg                           <  1:16721411‑M2/35‑9 (MQ=255)
         cccagCCCCTGGATAAACTTGCTCTCcagcgtcgg                          >  1:356515‑M2/3‑26 (MQ=255)
         aaCAGCCCCTGGATAAACTTGCTCTCcagcgtctg                          <  1:13900055‑M2/35‑10 (MQ=255)
         aaCAGCCCCTGGATAAACTTGCTCTCcagcgtcgg                          <  1:20286921‑M2/35‑10 (MQ=255)
         aaCAGCCCCTGGATAAACTTGCTCTCcagcgtcgg                          <  1:4270302‑M2/35‑10 (MQ=255)
         aaCAGCCCCTGGATAAACTTGCTCTCcagcgtcgg                          <  1:750125‑M2/35‑10 (MQ=255)
          ccAGCCCCTGGATAAACTTGCTCTCCAGCGTCGGt                         <  1:13508421/34‑1 (MQ=255)
          ccAGCCCCTGGATAAACTTGCTCTCCAGCGTCGGt                         <  1:3761632/34‑1 (MQ=255)
           cAGCCCCTGGATAAACTTGCTCTCcagcgtcgggg                        <  1:5555809‑M2/35‑12 (MQ=255)
           cAGCCCCTGGATAAACTTGCTCTCcagcgtcgggg                        <  1:1820504‑M2/35‑12 (MQ=255)
           cAGCCCCTGGATAAACTTGCTCTCcagcgtcgggg                        <  1:5924531‑M2/35‑12 (MQ=255)
           cAGCCCCTGGATAAACTTGCTCTCcagcgtcgggg                        <  1:8234315‑M2/35‑12 (MQ=255)
           cAGCCCCTGGATAAACTTGCTCTCCAGCGTCGGtt                        <  1:15990803/35‑1 (MQ=255)
           cAGCCCCTGGATAAACTTGCTCTCCAGCGTCGGtt                        <  1:7516541/35‑1 (MQ=255)
           cAGCCCCTGGATAAACTTGCTCTCCAGCGTCGGtt                        <  1:11959313/35‑1 (MQ=255)
           cAGCCCCTGGACAAACTTGCTCTCcagcgtcgggg                        <  1:16618140‑M2/35‑12 (MQ=255)
            aGCCCCTTGATAAACTTGCTCTCcagcgtcggggg                       <  1:10288919‑M2/35‑13 (MQ=255)
            aGCCCCTGGATAAACTTGCTCTCcagcgtcggggg                       <  1:10780355‑M2/35‑13 (MQ=255)
            aGCCCCTGGATAAACTTGCTCTCcagcgtcggggg                       <  1:5623750‑M2/35‑13 (MQ=255)
            aGCCCCTGGATAAACTTGCTCTCcagcgtcggggg                       <  1:5340334‑M2/35‑13 (MQ=255)
            aGCCCCTGGATAAACCTGCTCTCcagcgtcggggg                       <  1:6770817‑M2/35‑13 (MQ=255)
            aGCCCCTCGATAAACTTGCTCTCcagcgtcggggg                       <  1:11057782‑M2/35‑13 (MQ=255)
             gCCCCTGGATAAACTTGCTCTCcagcgtcgggggg                      <  1:7062122‑M2/35‑14 (MQ=255)
             gCCCCTGGATAAACTTGCTCTCcagcgtcgggggg                      <  1:8172764‑M2/35‑14 (MQ=255)
             gCCCCTGGATAAACTTGCTCTCcagcgtcgggggg                      <  1:20092454‑M2/35‑14 (MQ=255)
             gCCCCTGGATAAACTTGCTCTCCAGCGTCGGTTTc                      <  1:9513881/35‑1 (MQ=255)
             gCCCCTGGATAAACTTGCTCTCCAGCGTCGGTTTc                      <  1:7094539/35‑1 (MQ=255)
              ccccTGGATAAACTTGCTCTCcagcgtcggggggg                     <  1:2006030‑M2/35‑15 (MQ=255)
              ccccTGGATAAACTTGCTCTCcagcgtcggggggg                     <  1:17674231‑M2/35‑15 (MQ=255)
              ccccTGGATAAACTTGCTCTCCAGCGTCGGTTTCa                     <  1:497425/35‑1 (MQ=255)
              ccccTGGATAAACTTGCTCTCCAGCGTCGGTTTCa                     <  1:4450641/35‑1 (MQ=255)
              ccccTGGATAAACTTGCTCTCCAGCGTCGGTTTCa                     <  1:8673685/35‑1 (MQ=255)
              ccccTGGATAAACTTGCTCTCCAGCGTCGGTTTCa                     <  1:19325470/35‑1 (MQ=255)
              ccccTGGATAAACTTGCTCTCCAGCGTCGGTTTCa                     <  1:12412719/35‑1 (MQ=255)
               cccTGGATAAACTTGCTCTCcagcgtcgggggggg                    <  1:6541698‑M2/35‑16 (MQ=255)
               cccTGGATAAACTTGCTCTCCAGCGTTGGGTTCAg                    >  1:7617849/1‑35 (MQ=37)
               cccTGGATAAACTTGCTCTCCAGCGTCGGTTTCAg                    <  1:8495180/35‑1 (MQ=255)
               cccTGGATAAACTTGCTCTCCAGCGTCGGTTTCAg                    <  1:1571133/35‑1 (MQ=255)
               cccTGGATAAACTTGCTCTCAAGCGTCGGTTTCAg                    <  1:4219976/35‑1 (MQ=255)
                ccTGGATAAACTTGCTCTCcagcgtcggggggggg                   <  1:6545660‑M2/35‑17 (MQ=255)
                ccTGGATAAACTTGCTCTCcagcgtcggggggggg                   <  1:16854373‑M2/35‑17 (MQ=255)
                ccTGGATAAACTTGCTCTCcagcgtcggggggggg                   <  1:482860‑M2/35‑17 (MQ=255)
                ccTGGATAAACTTGCTCTCCAGCGTCGGTTTCAgg                   <  1:19364269/35‑1 (MQ=255)
                ccTGGATAAACTTGCTCTCCAGCGTCGGTTTCAgg                   <  1:4087490/35‑1 (MQ=255)
                 ttGGATAAACTTGCTCTCCAGCGTCGGTTTCAGGt                  <  1:5339175/34‑1 (MQ=255)
                 cTGGATAAACTTGCTCTCcagcgtcgggggggggg                  <  1:1332990‑M2/35‑18 (MQ=255)
                 cTGGATAAACTTGCTCTCcagcgtcgggggggggg                  <  1:4993558‑M2/35‑18 (MQ=255)
                 cTGGATAAACTTGCTCTCCAGCGTCGGTTTCAGGt                  <  1:8461117/35‑1 (MQ=255)
                 cTGGATAAACTTGCTCTCCAGCGTCGGTTTCAGGt                  <  1:15601194/35‑1 (MQ=255)
                 cTGGATAAACTTGCTCTCCAGCGTCGGTTTCAGGt                  <  1:6298967/35‑1 (MQ=255)
                  tGGATAAACTTGCTCTCcagcgtcggggggggggg                 <  1:6403791‑M2/35‑19 (MQ=255)
                  tGGATAAACTTGCTCTCCAGCGTCGGTTTCAGGTc                 <  1:13395367/35‑1 (MQ=255)
                  tGGATAAACTTGCTCTCCAGCGTCGGTTTCAGGTc                 <  1:14189258/35‑1 (MQ=255)
                  tGGATAAACTTGCTCTCCAGCGTCGGTTTCAGGTc                 <  1:6801249/35‑1 (MQ=255)
                   ggATAAACTTGCTCTCcagcgtcgggggggggggg                <  1:3710290‑M2/35‑20 (MQ=255)
                   ggATAAACTTGCTCTCCAGCGTCGGTTTCAGGTcg                <  1:9063290/35‑1 (MQ=255)
                   ggATAAACTTGCTCTCCAGCGTCGGTTTCAGGTcg                <  1:1956089/35‑1 (MQ=255)
                    gATAAACTTGCTCTCCAGCGTCGGTTTCAGGTcgc               <  1:20321462/35‑1 (MQ=255)
                    gATAAACTTGCTCTCCAGCGTCGGTTTCAGGTcgc               <  1:10479832/35‑1 (MQ=255)
                     aTAAACTTGCTCTCCAGCGTCGGTTTCAGGTcgcg              <  1:398890/35‑1 (MQ=255)
                      tAAACTTGCTCTCCAGCGTCGGTTTCAGGTCGCGa             <  1:11752816/35‑1 (MQ=255)
                       aaaCTTGCTCTCCAGCGTCGGTTTCAGGTCGCGAg            <  1:6211757/35‑1 (MQ=255)
                       aaaCTTGCTCTCCAGCGTCGGTTTCAGGTCGCGAg            <  1:8051077/35‑1 (MQ=255)
                        aaCTTGCTCTCCAGCGTCGTTTTCAGGTCGCGAgg           >  1:7061863/1‑35 (MQ=255)
                         aCTTGCTCTCCAGCGTCGGTTTCAGGTCGCGAGGa          <  1:15575754/35‑1 (MQ=255)
                         aCTTGCTCTCCAGCGTCGGTTTCAGGTCGCGAGGa          <  1:15925417/35‑1 (MQ=255)
                          cTTGCTCTCCAGCGTCGGTTTCAGGTCGCGAGGAt         <  1:2346484/35‑1 (MQ=255)
                          cTTGCTCTCCAGCGTCGGTTTCAGGTCGCGAGGAt         <  1:13215389/35‑1 (MQ=255)
                          cTTGCTCTCCAGCGTCGGTTTCAGGTCGCGAGGAt         <  1:19931623/35‑1 (MQ=255)
                           ttGCTCTCCAGCGTCGGTTTCAGGTCGCGAGGATc        <  1:1164366/35‑1 (MQ=255)
                           ttGCTCTCCAGCGTCGGTTTCAGGTCGCGAGGATc        <  1:3814150/35‑1 (MQ=255)
                           ttGCTCTCCAGCGTCGGTTTCAGGTCGCGAGGATc        <  1:18658215/35‑1 (MQ=255)
                           ttGCTCTCCAGCGTCGGTTTCAGGTCGCGAGGATc        <  1:18100755/35‑1 (MQ=255)
                           ttGCTCTCCAGCGTCGGTTTCAGGTCGCGAGGATc        <  1:15476214/35‑1 (MQ=255)
                            tGCTCTCCAGCGTCGGTTTCAGGTCGCGAGGATCg       <  1:5861994/35‑1 (MQ=255)
                             gCTCTCCAGCGTCGGTTTCAGGTCGCGAGGATCga      <  1:3682314/35‑1 (MQ=255)
                              ctctCCAGCGTCGGTTTCAGGTCGCGAGGATCgaa     <  1:16808249/35‑1 (MQ=255)
                              ctctCCAGCGTCGGTTTCAGGTCGCGAGGATCgaa     <  1:17616561/35‑1 (MQ=255)
                               tctcCAGCGTCGGTTTCAGGTCGCGAGGATCgaag    <  1:18099028/35‑1 (MQ=255)
                               tctcCAGCGTCGGTTTCAGGTCGCGAGGATCgaag    <  1:6681527/35‑1 (MQ=255)
                               tctcCAGCGTCGGTTTCAGGTCGCGAGGATCgaag    <  1:11376135/35‑1 (MQ=255)
                                ctcCAGCGTCGGTTTCAGGTCGCGAGGATCgaaga   <  1:12756977/35‑1 (MQ=255)
                                 tcCAGCGTCGGTTTCAGGTCGCGAGGATCgaagaa  <  1:8500947/35‑1 (MQ=255)
                                 tcCAGCGTCGGTTTCAGGTCGCGAGGATCgaagaa  <  1:6237847/35‑1 (MQ=255)
                                  |                                 
CCAGCAAAGAACAGCCCCTGGATAAACTTGCTCTCCAGCGTCGGTTTCAGGTCGCGAGGATCGAAGAA  >  REL606/3884889‑3884956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.