Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 3,249,829 C→A 7.2% G474C (GGT→TGT)  infB ← translation initiation factor IF‑2

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,249,8290C→A 7.2% 4.1 ‑0.4 ‑0.081G474C (GGT→TGT) infBtranslation initiation factor IF‑2
Reads supporting (aligned to +/- strand):  new base (3/3):  ref base (47/28):  total (50/31)
Fisher's exact test strand distribution p-value = 6.70e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.82e-01

Only 100 of 123 total aligned reads displayed.

TGCTGGATTGCTTCGATGGTCTGCGGCATCACACCGTCGTCGGCAGCAACAACCAGGACTACGATGTCC  >  REL606/3249795‑3249863
                                  |                                  
tGCTGGATTGCTTCGATGGTCTGCGGCATCACAcc                                    <  1:8367710/35‑1 (MQ=255)
tGCTGGATTGCTTCGATGGTCTGCGGCATCACAcc                                    >  1:8232126/1‑35 (MQ=255)
tGCTGGATTGCTTCGATGGTCTGCGGCATCACAcc                                    >  1:3951318/1‑35 (MQ=255)
tGCTGGATTGCTTCGATGGTCTGCGGCATCACAcc                                    <  1:2551021/35‑1 (MQ=255)
tGCTGGATTGCTTCGATGGTCTGCGGCATCACAcc                                    <  1:18000468/35‑1 (MQ=255)
tGCTGGATTGCTTCGATGGTCTGCGGCATCACAcc                                    <  1:12858188/35‑1 (MQ=255)
 gCTGGATTGCTTCGATGGTCTGCGGCATCACACcg                                   >  1:3899032/1‑35 (MQ=255)
 gCTGGATTGCTTCGATGGTCTGCGGCATCACACcg                                   <  1:3514683/35‑1 (MQ=255)
 gCTGGATTGCTTCGATGGTCTGCGGCATCACACcg                                   <  1:348946/35‑1 (MQ=255)
  cTGGATTGCTTCGATGGTCTGCGGCATCACACcgt                                  <  1:3322814/35‑1 (MQ=255)
   tgtaTTTCTTCGGTGGTCTTCGGCATCACACcgtc                                 <  1:10088451/32‑1 (MQ=19)
   tGGATTGCTTCGATGGTCTGCGGGATCACACcgtc                                 <  1:6803216/35‑1 (MQ=255)
   tGGATTGCTTCGATGGTCTGCGGCATCACACcgtc                                 >  1:13280100/1‑35 (MQ=255)
   tGGATTGCTTCGATGGTCTGCGGCATCACACcgtc                                 >  1:2354392/1‑35 (MQ=255)
   tGGATTGCTTCGATGGTCTGCGGCATCACACcgtc                                 <  1:6798967/35‑1 (MQ=255)
   tGGATTGCTTCGATGGTCAGCGGCATCACACcgac                                 >  1:14456946/1‑33 (MQ=38)
    ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg                                >  1:15405935/1‑35 (MQ=255)
    ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg                                >  1:5420012/1‑35 (MQ=255)
    ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg                                >  1:1223105/1‑35 (MQ=255)
    ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg                                >  1:17503994/1‑35 (MQ=255)
    ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg                                >  1:2326451/1‑35 (MQ=255)
    ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg                                >  1:7863428/1‑35 (MQ=255)
    ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg                                <  1:13730552/35‑1 (MQ=255)
     gATTGCTTCGATGGTCTGCGGCATCACACcgtcgt                               >  1:18408335/1‑35 (MQ=255)
     gATTGCTTCGATGGTCTGCGGCATCACACcgtcgt                               >  1:16097995/1‑35 (MQ=255)
      aTTGCTTCGATGGTCTGCGGCATCACACCgtcgtc                              >  1:15175555/1‑35 (MQ=255)
      aTTGCTTCGATGGTCTGCGGCATCACACCgtcgtc                              <  1:13905576/35‑1 (MQ=255)
      aTTGCTTCGATGGTCTGCGGCATCACACCgtcgtc                              <  1:15264905/35‑1 (MQ=255)
      aTTGCTTCGATGGTCTGCGGCATCACACCgtcgtc                              >  1:10726484/1‑35 (MQ=255)
      aTTGCTTCGATGGTCTGCGGCATCACACCgtcgtc                              <  1:10153529/35‑1 (MQ=255)
      aTTGCTTCGATGGTCTGCGGCATCACACCgtcgtc                              >  1:9403432/1‑35 (MQ=255)
      aTTGCTTCGATGGTCTGCGGCATCACACAgtcgtc                              <  1:197043/35‑1 (MQ=255)
       ttGCTTCGATGGTCTGCGGCATCACACCGtcgtcg                             <  1:5899318/35‑1 (MQ=255)
       ttGCTTCGATGGTCTGCGGCATCACACCGtcgtcg                             <  1:5869073/35‑1 (MQ=255)
       ttGCTTCGATGGTCTGCGGCATCACACCGtcgtcg                             <  1:18115729/35‑1 (MQ=255)
       ttGCTTCGATGGTCTGCGGCATCACACAGtcgtcg                             >  1:18438479/1‑35 (MQ=255)
       ttGCTCCGATGGTCTGCGGCATCACACCGtcgtcg                             <  1:7682180/35‑1 (MQ=255)
        tGCTTCGATGGTCTGCTGCATCACACCGTCGTCgg                            >  1:3851188/1‑35 (MQ=255)
        tGCTTCGATGGTCTGCTGCATCACACCGTCGTCgg                            >  1:18262928/1‑35 (MQ=255)
        tGCTTCGATGGTCTGCGGCATCACACCGTCGTCgg                            <  1:18479950/35‑1 (MQ=255)
        tGCTTCGATGGTCTGCGGCATCACACCGTCGTCgg                            <  1:7918496/35‑1 (MQ=255)
        tGCTTCGATGGTCTGCGGCATCACACCGTCGTCgg                            <  1:8150663/35‑1 (MQ=255)
        tGCTTCGATGGTCTGCGGCATCACACCGTCGCCgg                            >  1:1972994/1‑35 (MQ=255)
         gCTTCGATGGTCTGCGGCATCACACCGTCGTCGgc                           <  1:15497494/35‑1 (MQ=255)
         gCTTCGATGGTCTGCGGCATCACACCGTCGTCGgc                           <  1:13076525/35‑1 (MQ=255)
          cTTCGATGGTCTGCGGCATCACACCGTCGTCGgca                          <  1:4736926/35‑1 (MQ=255)
          cTTCGATGGTCTGCGGCATCACACCGTCGTCGgca                          <  1:12012831/35‑1 (MQ=255)
          cTTCGATGGTCTGCGGCATCACACCGTCGTCGgca                          <  1:8304982/35‑1 (MQ=255)
          cTTCGATGGTCTGCGGCATCACACCGTCGTCGgca                          >  1:17159823/1‑35 (MQ=255)
           ttCGATGGTCTGCGGCATCACACCGTCGTCGgcag                         >  1:11325482/1‑35 (MQ=255)
           ttCGATGGTCTGCGGCATCACACCGTCGTCGgcag                         <  1:12851458/35‑1 (MQ=255)
           ttCGATGGTCTGCGGCATCACACCGTCGTCGgcag                         >  1:16484226/1‑35 (MQ=255)
           ttCGATGGTCTGCGGCATCACACCGTCGTCGgcag                         >  1:10722160/1‑35 (MQ=255)
           ttCGATGGTCTGCGGCATCACACCCTCGTCGgcag                         <  1:19140730/35‑1 (MQ=255)
            tCGATGGTCTGCGGCATCACACCGTCGTCGgcagc                        <  1:7336902/35‑1 (MQ=255)
            tCGATGGTCTGCGGCATCACACCGTCGTCGgcagc                        <  1:8380823/35‑1 (MQ=255)
            tCGATGGTCTGCGGCATCACACCGTCGTCGgcagc                        <  1:9446865/35‑1 (MQ=255)
            tCGATGGTCTGCGGCATCACACCGTCGTCGgcagc                        >  1:14726589/1‑35 (MQ=255)
            tCGATGGTCTGCGGCATCACACCGTCGTCGgcagc                        >  1:12086959/1‑35 (MQ=255)
             cGATGGTCTGCGGCATCACACCGTCGTCGgcagca                       <  1:5660629/35‑1 (MQ=255)
             cGATGGTCTGCGGCATCACACAGTCGTCGgcagca                       <  1:16022106/35‑1 (MQ=255)
              gATGGTCTGCGGCATCACACCGTCGTCGGCAGcaa                      >  1:10560343/1‑35 (MQ=255)
              gATGGTCTGCGGCATCACACCGTCGTCGGCAGcaa                      >  1:1615371/1‑35 (MQ=255)
              gATGGTCTGCGGCATCACACCGTCGTCGGCAGcaa                      >  1:11181959/1‑35 (MQ=255)
              gATGGTCTGCGGCATCACACCGTCGTCGGCAGcaa                      >  1:19239244/1‑35 (MQ=255)
              gATGGTCTGCGGCATCACACAGTCGTCGGCAGcaa                      >  1:20357913/1‑35 (MQ=255)
               aTGGTCTGCGGCATCACACCGTCGTCGGCAGcaac                     >  1:12732667/1‑35 (MQ=255)
               aTGGTCTGCGGCATCACACCGTCGTCGGCAGcaac                     >  1:1335356/1‑35 (MQ=255)
                tGGTCTGCGGCATCACACCGTCGTCGGCAGcaaca                    >  1:8932869/1‑35 (MQ=255)
                tGGTCTGCGGCATCACACCGTCGTCGGCAGcaaca                    >  1:19987134/1‑35 (MQ=255)
                 ggTCTGCGGCATCACACCGTCGTCTGCAGcaacaa                   >  1:10762603/1‑35 (MQ=255)
                 ggTCTGCGGCATCACACCGTCGTCGGCAGcaacaa                   >  1:10979404/1‑35 (MQ=255)
                 ggTCTGCGGCATCACACCGTCGTCGGCAGcaacaa                   <  1:12076956/35‑1 (MQ=255)
                 ggTCTGCGGCATCACACCGTCGTCGGCAGcaacaa                   >  1:13654894/1‑35 (MQ=255)
                 ggTCTGCGGCATCACACCGTCGTCGGCAGcaacaa                   <  1:13693574/35‑1 (MQ=255)
                 ggTCTGCGGCATCACACCGTCGTCGGCAGcaacaa                   <  1:19038870/35‑1 (MQ=255)
                 ggTCTCCGGCATCCCACCGTCGTCGGCAGcaacaa                   <  1:12560665/35‑1 (MQ=37)
                  gTCTGCGGCATCACACCGTCGTCGGCAGCaaaaac                  >  1:14255463/1‑35 (MQ=255)
                    cTGCGGCATCACACCGTCGTCGGCAGGAACAAACa                >  1:16713056/1‑35 (MQ=37)
                      gCGGCATCACACCGTCGTCGGCAGCAACAACCAgg              >  1:17205538/1‑35 (MQ=255)
                        ggCATCACACCGTCGTCGGCAGCAACAACCAGGAc            >  1:13442689/1‑35 (MQ=255)
                        ggCATCACACCGTCGTCGGCAGCAACAACCAGGAc            >  1:14944001/1‑35 (MQ=255)
                        ggCATCACACCGTCGTCGGCAGCAACAACCAGGAc            >  1:10880857/1‑35 (MQ=255)
                         gCATCACACCGTCGTCGGCAGCAACAACCAGGACt           >  1:8566486/1‑35 (MQ=255)
                         gCATCACACCGTCGTCGGCAGCAACAACCAGGACt           >  1:17611473/1‑35 (MQ=255)
                           aTCACACCGTCGTCGGCAGCAACAACCAGGACTAc         >  1:10240379/1‑35 (MQ=255)
                             cacaCCGTCGTCGGCAGCAACAACCAGGACTActa       >  1:6371533/1‑33 (MQ=255)
                             cacaCCGTCGTCGGCAGCAACAACCAGGACTACGa       >  1:14197177/1‑35 (MQ=255)
                             cacaCCGTCGTCGGCAGCAACAACCAGGACTACGa       >  1:11329752/1‑35 (MQ=255)
                              acacCGTCGTCGGCAGCAACAACCAGGACTACgct      >  1:5729831/1‑33 (MQ=255)
                              acacCGTCGTCGGCAGCAACAACCAGGACTACGAt      >  1:10421230/1‑35 (MQ=255)
                               cacCGTCGTCTGCAGCAACAACCAGGACTACGATg     >  1:16879111/1‑35 (MQ=255)
                               cacCGTCGTCGGCAGCAACAACCAGGACCACCATg     >  1:2435707/1‑35 (MQ=37)
                               cacCGTCGTCGGCAGCAAAAACCAGGACTCCGATg     >  1:2030970/1‑35 (MQ=37)
                               cacAGTCGTCGGCAGCAACAACCAGGACTACGATg     >  1:1890805/1‑35 (MQ=255)
                                 ccGTCGTCGGCAGCAACAACCAGGACTACGATGTc   <  1:3344332/35‑1 (MQ=255)
                                 ccGTCGTCGGCAGCAACAACCAGGACTACGATGTc   >  1:13928525/1‑35 (MQ=255)
                                 ccGTCGTCGGCAGCAACAACAAGGACTACGATGTc   <  1:1806767/35‑1 (MQ=255)
                                  cgtcgtCGGCAGCAACAACCAGGACTACGATGTcc  >  1:3720909/1‑35 (MQ=255)
                                  cgtcgtCGGCAGCAACAACCAGGACTACGATGTcc  >  1:11329061/1‑35 (MQ=255)
                                  |                                  
TGCTGGATTGCTTCGATGGTCTGCGGCATCACACCGTCGTCGGCAGCAACAACCAGGACTACGATGTCC  >  REL606/3249795‑3249863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.