New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 13453 =80 (0.780)8 (0.080) 4/44 NT 10.6% coding (1293/1917 nt) dnaK molecular chaperone DnaK
?REL606 348289 = 62 (0.660)coding (475/1212 nt) mhpT predicted 3‑hydroxyphenylpropionic transporter

CCCTGCAGCACATGGATGGTTACCGCAGACTGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/13488‑13453
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGTTTCGCGGGGGCAAACTTAGCATGGCAAACGG  >  REL606/348289‑348322
                                                                      
CCCTGCAGCACATGGATTGTTACCGCAGACTGGTT                                     >  1:6459159/1‑35
CCCTGCAGCACATGGATGGTTACCGCAGACTGGTT                                     >  1:5810416/1‑35
CCCTGCAGCACATGGATGGTTACCGCAGACTGGTT                                     <  1:1228401/35‑1
CCCTGCAGCACATGGATGGTTACCGCAGACTGGTT                                     <  1:13939226/35‑1
CCCTGCAGCACATGGATGGTTACCGCAGACTGGTT                                     <  1:14700473/35‑1
CCCTGCAGCACATGGATGGTTACCGCAGACTGGTT                                     <  1:18368125/35‑1
 CCTGCAGCACATGGATGGTTACCGCAGACTGGTTG                                    <  1:7080247/35‑1
 CCTGCAGCACATGGATGGTTACCGCAGACTGGTTG                                    <  1:7113949/35‑1
 CCTGCAGCACATGGATGGTTACCGCAGACTGGTTG                                    >  1:13092342/1‑35
 CCTGCAGCACATGGATGGTTACCGCAGACTGGTTG                                    <  1:3880936/35‑1
 CCTGCAGCACATGGATGGTTACCGCAGACTGGTTG                                    <  1:13423/35‑1
 CCTGCAGCACATGGATGGTTACCGCAGACTGGTTG                                    >  1:2568191/1‑35
 CCTGCAGCACATGGATGGTTACCGCAGACTGGTTG                                    >  1:8791773/1‑35
 CCTGCAGCACATGGATGGTTACCGCAGACTGGGTG                                    >  1:19950375/1‑35
 CCTGCAGCACATGGATGGTTACCGCAGACTGGGTG                                    >  1:13754400/1‑35
  CTGCAGCACATGGATGGTTACCGCAGACTGGTTGG                                   >  1:9127114/1‑35
  CTGCAGCACATGGATGGTTACCGCAGACTGGTTGG                                   >  1:18672471/1‑35
  CTGCAGCACATGGATGGTTACCGCAGACTGGTTGG                                   >  1:2153666/1‑35
  CTGCAGCACATGGATGGTTACCGCAGACTGGTTGG                                   >  1:9451464/1‑35
   TGCAGCACATGGATGGTTACCGCAGCCTGGTTGGt                                  >  1:19391807/1‑34
   TGCAGCACATGGATGGTTACCGCAGACTGGTTGGc                                  >  1:3830305/1‑34
   TGCAGCACATGGATGGTTACCGCAGACTGGTTGGG                                  >  1:6538892/1‑35
   TGCAGCACATGGATGGTTACCGCAGACTGGTTGGG                                  >  1:13557449/1‑35
   TGCAGCACATGGATGGTTACCGCAGACTGGTTGGG                                  >  1:6335363/1‑35
   TGCAGCACATGGATGGTTACCGCAGACTGGTTGGG                                  >  1:5738138/1‑35
   TGCAGCACATGGATGGTTACCGCAGACTGGGTGGG                                  >  1:4528615/1‑35
    GCAGCACATGGATGGTTACCGCAGACTGGTTGGGT                                 >  1:13332162/1‑35
     CAGCACATGGATGGTTACCGCAGACTGGTTGGGgt                                >  1:8523359/1‑33
     CAGCACATGGATGGTTACCGCAGACTGGTTGGGct                                >  1:1486835/1‑33
     CAGCACATGGATGGTTACCGCAGACTGGTTGGGTT                                >  1:19286405/1‑35
     CAGCACATGGATGGTTACCGCAGACTGGTTGGGTT                                >  1:17167701/1‑35
      AGCACATGTATGGTTACCGCAGACTGGTTGGGTTT                               >  1:2293986/1‑35
      AGCACATGGATGGTTACTGCAGACTGGTTGGGTTc                               >  1:14710110/1‑34
      AGCACATGGATGGTTACCGCAGACTGGTTGGGgtc                               >  1:8879837/1‑32
      AGCACATGGATGGTTACCGCAGACTGGTTGGGTTc                               >  1:13714106/1‑34
       GCACATGGATGGTTACCGCAGACTGGTTGGGGTTt                              >  1:9503648/1‑34
        CACATGGATGGTTACCGCAGACTGGTTGGGTTTtt                             >  1:1459888/1‑33
         ACATGGATGGTTACCGCAGACTGGTTGGGTTTacc                            >  1:20574339/1‑32
         ACATGGATGGTTACCGCAGACTGGTTGGGTTTCGC                            >  1:11981340/1‑35
         ACATGGATGGTTACCGCAGACTGGTTGGGTTTCGC                            >  1:15325084/1‑35
         ACATGGATGGTTACCGCAGACTGGTTGGGTTCCGC                            >  1:11921722/1‑35
            TGGATGGTTACCGCAGACTGGTTGGGTTTCGCGGG                         >  1:5906861/1‑35
             GGATGGTTACCGCAGACTGGTTGGGTTTCGCGGGG                        >  1:8985988/1‑35
             GGATGGTTACCGCAGACTGGTTGGGTTTCGAGGGG                        >  1:9137975/1‑35
              GATGGTTACCGCAGACTGGTTGGGTTTCGCGGGGG                       >  1:9066462/1‑35
                TGGTTACCGCAGACTGGTTGGGTTTCGCGGGGGag                     >  1:1791925/1‑33
                                  TGGGTTTCGCGGGGGCAAACTTAGCATGGCAAACG   >  1:1965432/1‑35
                                  TGGGTTTCGCGGGGGCAAACTTAGCATGGCAAACG   <  1:16852242/35‑1
                                  TGGGTTTCGCGGGGGCAAACTTAGCATGGCAAACG   <  1:11966106/35‑1
                                   GGGTTTCGCGTGGGCAAACTTAGCATGGCAAACGG  >  1:13735543/1‑35
                                   GGGTTTCGCGGGGGCAAACTTAGCATGGCAAACGG  >  1:6560769/1‑35
                                   GGGTTTCGCGGGGGCAAACTTAGCATGGCAAACGG  >  1:6176963/1‑35
                                   GGGTTTCGCGGGGGCAAACTTAGCATGGCAAACGG  >  1:1927346/1‑35
                                   GGGTTTCGCGGGGGCAAACTTAGCATGGCAAACGG  >  1:18772612/1‑35
                                   GGGTTTCGCGGGGGCAAACTTAGCATGGCAAACGG  >  1:17141439/1‑35
                                   GGGTTTCGCGGGGGCAAACTTAGCATGGCAAACGG  <  1:10415504/35‑1
                                                                      
CCCTGCAGCACATGGATGGTTACCGCAGACTGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/13488‑13453
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGTTTCGCGGGGGCAAACTTAGCATGGCAAACGG  >  REL606/348289‑348322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.