Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,759,856 | 0 | T→G | 7.2% | 11.5 ‑41.6 0.0 | 260 | F254V (TTT→GTT) | ygbM | hypothetical protein |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Rejected: Prediction has biased read strand distribution supporting polymorphism. | ||||||||||
Reads supporting (aligned to +/- strand): new base (24/0): ref base (32/204): total (56/204) | ||||||||||
Fisher's exact test strand distribution p-value = 8.87e-19 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
Only 100 of 319 total aligned reads displayed.
ACCTCGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGTTTGACGCCTGGCGCTAATTCGTTAAATCCCTAAT > REL606/2759822‑2759890 | ccTCGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGtt < 1:7436830/35‑1 (MQ=255) cTCGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGttt < 1:15033257/35‑1 (MQ=255) cTCGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGttt < 1:10378677/35‑1 (MQ=255) cTCGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGgtt > 1:16447581/1‑35 (MQ=255) cTCGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGgtt > 1:7126802/1‑35 (MQ=255) cTCGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGgtt > 1:11578331/1‑35 (MQ=255) tcttGGCCTCACCGAAGAAGGGCTTGGCT‑GGTTTg < 1:15697148/32‑1 (MQ=255) tCGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGTTTg < 1:413914/35‑1 (MQ=255) tCGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGTTTg < 1:4832346/35‑1 (MQ=255) tCGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGGTTg > 1:1467673/1‑35 (MQ=255) tCGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGGTTg > 1:9136589/1‑35 (MQ=255) cGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGgttta > 1:10720227/1‑33 (MQ=37) cGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGTTTGa < 1:14821718/35‑1 (MQ=255) cGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGTTTGa < 1:18376837/35‑1 (MQ=255) cGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGGTTgt > 1:6364134/1‑34 (MQ=255) gTGGCCTCACCGAAGAAGGGCTTGGCT‑GGTTTGAc < 1:1496280/35‑1 (MQ=255) gTGGCCTCACCGAAGAAGGGCTTGGCT‑GGTTTGAc < 1:13324413/35‑1 (MQ=255) gTGGCCTCACCGAAGAAGGGCTTGGCT‑GGTTTGAc < 1:19711857/35‑1 (MQ=255) gTGGCCTCACCGAAGAAGGGCTTGGCT‑GGGTTgtc > 1:2628123/1‑33 (MQ=37) tGGCCTCACCGAAGAAGGGCTTGGCT‑TGTTTGACg > 1:11101279/1‑35 (MQ=255) tGGCCTCACCGAAGAAGGGCTTGGCT‑GGTTTGACg < 1:19465282/35‑1 (MQ=255) tGGCCTCACCGAAGAAGGGCTTGGCT‑GGTTTGACg < 1:5857845/35‑1 (MQ=255) tGGCCTCACCGAAGAAGGGCTTGGCT‑GGGTTTACg > 1:15337238/1‑35 (MQ=25) tGGCCTCACCGAAGAAGGGCTTGGCT‑GGGTTGaag > 1:6708529/1‑33 (MQ=37) ggCCTCACCGAAGAAGGGCTTGGCT‑GGTTTGACGc < 1:2203199/35‑1 (MQ=255) gCCTCACCGAAGAAGGGCTTGGCT‑GGTTTGACGcc < 1:6255908/35‑1 (MQ=255) ccTCACCGAAGAAGGGCTTGGCT‑GGTTTGACGCCt < 1:6190788/35‑1 (MQ=255) ccTCACCGAAGAAGGGCTTGGCT‑GGTTTGACGCCt < 1:12379090/35‑1 (MQ=255) ccTCACCGAAGAAGGGCTTGGCT‑GGGTTGACGCCt > 1:7552402/1‑35 (MQ=255) cTCACCGAAGAAGTGCTTGGCT‑GGTTTGACGCCTg > 1:20097899/1‑35 (MQ=255) cTCACCGAAGAAGGGCTTGGCTGGGTTTGACGctg > 1:17151759/1‑33 (MQ=25) cTCACCGAAGAAGGGCTTGGCT‑GGGTTGACGCCTg > 1:4687241/1‑35 (MQ=255) tCACCGAAGAAGGGCTTGGCT‑GGTTTGACGCCTgg < 1:17683669/35‑1 (MQ=255) tCACCGAAGAAGGGCTTGGCT‑GGTTTGACGCCTgg < 1:1845067/35‑1 (MQ=255) tCACCGAAGAAGGGCTTGGCT‑GGGTTGACGCCttt > 1:13394626/1‑33 (MQ=37) tCACCGAAGAAGGGCTTGGCT‑GGGTTGACGCCTgg > 1:13341014/1‑35 (MQ=255) cACCGAAGAAGGGCTTGGCT‑GGTTTGACGCCTGgc < 1:1312113/35‑1 (MQ=255) cACCGAAGAAGGGCTTGGCT‑GGTTTGACGCCTGgc < 1:6867377/35‑1 (MQ=255) cACCGAAGAAGGGCTTGGCT‑GGTTTGACGCCTGgc < 1:5662611/35‑1 (MQ=255) aCCGAAGAAGGGCTTGGCT‑GGTTTGACGCCTGgcg < 1:5507787/35‑1 (MQ=255) aCCGAAGAAGGGCTTGGCT‑GGTTTGACGCCTGgcg < 1:16692680/35‑1 (MQ=255) aCCGAAGAAGGGCTTGGCT‑GGTTTGACGCCTGgcg < 1:15870226/35‑1 (MQ=255) aCCGAAGAAGGGCTTGGCT‑GGTTTGACGCCTGgcg < 1:14325980/35‑1 (MQ=255) aCCGAAGAAGGGCTTGGCT‑GGTTTGACGCCTGgcg < 1:13641827/35‑1 (MQ=255) aCCGAAGAAGGGCTTGGCT‑GGTTTGACGCCTGgcg < 1:2710359/35‑1 (MQ=255) ccGAAGAAGGGCTTGGCT‑GGGTTTTCTCCCGgcgc > 1:4059912/1‑35 (MQ=12) cGAAGAAGGGCTTGGCT‑GGGTTGACGCCTGGCGCt > 1:6813262/1‑35 (MQ=255) cGAAGAAGGGCTTGGCT‑GGGTTGACGCCCGgggcc > 1:16655099/1‑34 (MQ=21) gaagaaGGGCTTGGCT‑GGTTTGACGCCTGGCGCTa < 1:560534/35‑1 (MQ=255) gaagaaGGGCTTGGCT‑GGTTTGACGCCTGGCGCTa < 1:2339510/35‑1 (MQ=255) gaagaaGGGCTTGGCT‑GGTTTGACGCCTGGCGCTa < 1:18804544/35‑1 (MQ=255) gaagaaGGGCTTGGCT‑GGTTTGACGCCTGGCGCTa < 1:5104624/35‑1 (MQ=255) gaagaaGGGCTTGGCT‑GGGTTTACGCCCGGCGCtc > 1:4422110/1‑34 (MQ=21) aagaagGGCTTGGCT‑GGTTTGACGCCTGGCGCTaa < 1:18109095/35‑1 (MQ=255) aagaagGGCTTGGCT‑GGTTTGACGCCTGGCGCTaa < 1:7779678/35‑1 (MQ=255) agaagGGCTTGGCT‑GGTTTGACGCCTGGCGCTAAt < 1:1413187/35‑1 (MQ=255) agaagGGCTTGGCT‑GGTTTGACGCCTGGCGCTAAt < 1:6105032/35‑1 (MQ=255) agaagGGCTTGGCT‑GGTTTGACGCCTGGCGCTAAt < 1:17923627/35‑1 (MQ=255) gaagGGCTTGGCT‑GGTTTGACGCCTGGCGCTAAtt < 1:11729661/35‑1 (MQ=255) gaagGGCTTGGCT‑GGTTTGACGCCTGGCGCTAAtt < 1:5806816/35‑1 (MQ=255) gaagGGCTTGGCT‑GGTTTGACGCCTGGCGCTAAtt < 1:11441960/35‑1 (MQ=255) gaagGGCTTGGCT‑GGTTTGACGCCTGGCGCTAAtt < 1:8839157/35‑1 (MQ=255) gaagGGCTTGGCT‑GGTTTGACGCATGGCGCTAAtt < 1:15139359/35‑1 (MQ=255) gaagGGCTTAGCT‑GGTTTGACGCCTGGCGCTAAtt < 1:9604737/35‑1 (MQ=255) aagGGCTTGGCT‑GGTTTGACGCCTGGCGCTAATTc < 1:17406914/35‑1 (MQ=255) aagGGCTTGGCT‑GGTTTGACGCCTGGCGCTAATTc < 1:18725759/35‑1 (MQ=255) aagGGCTTGGCT‑GGTTTGACGCCTGGCGCTAATTc < 1:4663837/35‑1 (MQ=255) agGGCTTGGCT‑GGTTTGACGCCTGGCGCTAATTCg < 1:15227775/35‑1 (MQ=255) agGGCTTGGCT‑GGTTTGACGCCTGGCGCTAATTCg < 1:10052359/35‑1 (MQ=255) gggCTTGGCT‑GGTTTGACGCCTGGCGCTAATTCGt < 1:8595273/35‑1 (MQ=255) gggCTTGGCT‑GGTTTGACGCCTGGCGCTAATTCGt < 1:3071922/35‑1 (MQ=255) gggCTTGGCT‑GGTTTGACGCCTGGCGCTAATTCGt < 1:12130116/35‑1 (MQ=255) gggCTTGGCT‑GGTTTGACGCCTGGCGCTAATTCGt < 1:18640230/35‑1 (MQ=255) gCTTGGCT‑GGTTTGACGCCTGGCGCTAATTCGTTa > 1:10589766/1‑35 (MQ=255) gCTTGGCT‑GGTTTGACGCCTGGCGCTAATTCGTTa > 1:9311526/1‑35 (MQ=255) gCTTGGCT‑GGTTTGACGCCTGGCGCTAATTCGTTa > 1:16028445/1‑35 (MQ=255) cTTGGCT‑GGTTTGACGCCTGGCGCTAATTCGTTaa < 1:1911840/35‑1 (MQ=255) ttGGCT‑GGTTTGACGCCTGGCGCTAATTCGTTaaa < 1:13962403/35‑1 (MQ=255) tGGCT‑GGTTTGACGCCTGGCGCTAATTCGTTAAAt > 1:7952623/1‑35 (MQ=255) tGGCT‑GGTTTGACGCCTGGCGCTAATTCGTTAAAt < 1:20242300/35‑1 (MQ=255) tGGCT‑GGTTTGACGCCTGGCGCTAATTCGTTAAAt < 1:13601067/35‑1 (MQ=255) tGGCT‑GGTTTGACGCCTGGCGCTAATTCGTTAAAt < 1:16892262/35‑1 (MQ=255) ggCT‑GGTTTGACGCCTGGCGCTAATTCGTTAAATc > 1:3403321/1‑35 (MQ=255) gCT‑GGTTTGACGCCTGGCGCTAATTCGTTAAATcc < 1:8053870/35‑1 (MQ=255) gCT‑GGTTTGACGCCTGGCGCTAATTCGTTAAATcc < 1:2053280/35‑1 (MQ=255) gCT‑GGTTTGACGCCTGGCGCTAATTCGTTAAATcc < 1:12934702/35‑1 (MQ=255) gCT‑GGTTTGACGCCTGGCGCTAATTCGTTAAATcc < 1:18278165/35‑1 (MQ=255) gCT‑GGTTTGACGCCTGGCGCTAATTCGTTAAATcc > 1:14899555/1‑35 (MQ=255) cT‑GGTTTGACGCCTGGCGCTAATTCGTTAAATccc > 1:20401787/1‑35 (MQ=255) t‑GGTTTGACGCCTGGCGCTAATTCGTTAAATCCCt > 1:15584822/1‑35 (MQ=255) t‑GGTTTGACGCCTGGCGCTAATTCGTTAAATCCCt > 1:6643396/1‑35 (MQ=255) ggTTTGACGCCTGGCGCTAATTCGTTAAATCCCTa < 1:386871/35‑1 (MQ=255) gTTTGACGCCTGGCGCTAATTCGTTAAATCCCTaa < 1:7020100/35‑1 (MQ=255) gTTTGACGCCTGGCGCTAATTCGTTAAATCCCTaa < 1:12662229/35‑1 (MQ=255) gTTTGACGCCTGGCGCTAATTCGTTAAATCCCTaa < 1:7272161/35‑1 (MQ=255) gTTTGACGCCTGGCGCTAATTCGTTAAATCCCTaa < 1:11935051/35‑1 (MQ=255) gTTTGACGCCTGGCGCTAATTCGTTAAATCCCTaa < 1:10155738/35‑1 (MQ=255) tttGACGCCTGGCGCTAATTCGTTAAATCCCTAAt < 1:10987858/35‑1 (MQ=255) tttGACGCCTGGCGCTAATTCGTTAAATCCCTAAt < 1:2400855/35‑1 (MQ=255) tttGACGCCTGGCGCTAATTCGTTAAATCCCTAAt > 1:3701038/1‑35 (MQ=255) | ACCTCGTGGCCTCACCGAAGAAGGGCTTGGCT‑GGTTTGACGCCTGGCGCTAATTCGTTAAATCCCTAAT > REL606/2759822‑2759890 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |