New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1204666 = | 70 (0.680) | 9 (0.120) | 4/36 | NT | 11.7% | coding (481/1461 nt) | phoQ | sensory histidine kinase in two‑compoent regulatory system with PhoP |
? | REL606 | 3975303 = | 83 (1.080) | coding (677/801 nt) | yigL | predicted hydrolase |
GAAGATGACGACGACGCGGAGATGACCCACTCGGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1204705‑1204666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCG > REL606/3975303‑3975336 GAAGATGACGACGACGCGGAGATGACCCACTCGGT < 1:10289995/35‑1 GAAGATGACGACGACGCGGAGATGACCCACTCGGT > 1:19754387/1‑35 GAAGATGACGACGACGCGGAGATGACCCACTCGGT > 1:3303393/1‑35 AAGATGACGACGACGCGGAGATGACCCACTCGGTG < 1:5960926/35‑1 AAGATGACGACGACGCGGAGATGACCCACTCGGTG < 1:14870809/35‑1 AAGATGACGACGACGCGGAGATGACCCACTCGGTG < 1:11943604/35‑1 AAGATGACGACGACGCGGAGATGACCCACTCGGTG > 1:11210576/1‑35 AAGATGACGACGACGCGGAGATGACCCACTCGGTG > 1:10435886/1‑35 AGATGACGACGACGCGGAGATGACCCACTCGGTGG > 1:5653137/1‑35 GATGACGACGACGCGGAGATGACCCACTCGGTGGC > 1:7179878/1‑35 GATGACGACGACGCGGAGATGACCCACTCGGTGGC < 1:6177808/35‑1 ATGACGACTACGCGGAGATGACCCACTCGGTGGCG > 1:10324768/1‑35 ATGACGACGACGCGGAGATGACCCACTCGGTGGCG > 1:8980386/1‑35 ATGACGACGACGCGGAGATGACCCACTCGGTGGCG < 1:6915199/35‑1 TGACGACGACGCTGAGATGACCCACTCGGTGGCGG > 1:15491148/1‑35 TGACGACGACGCGGAGATGACCCACTCGGTGGCGG < 1:12373124/35‑1 TGACGACGACGCGGAGATGACCCACTCGGTGGCGG < 1:4270046/35‑1 TGACGACGACGCGGAGATGACCCACTCGGTGGCGG < 1:16365656/35‑1 GACGACGACGCGGAGATGACCCACTNGGTGGCGGG > 1:16418714/1‑35 GACGACGACGCGGAGATGACCCACTCGGTGGCGGG > 1:8281808/1‑35 GACGACGACGCGGAGATGACCCACTCGGTGGCGGG > 1:14993815/1‑35 GACGACGACGCGGAGATGACCCACTCGGTGGCGGG > 1:5747865/1‑35 GACGACGACGCGGAGATGACCCACTCGGTGGCGGG > 1:3151665/1‑35 GACGACGCGGAGATGACCCACTCGGTGGCGGGGAA > 1:4223237/1‑35 GACGACGCGGAGATGACCCACTCGGTGGCGGGGAA > 1:7663864/1‑35 GACGACGCGGAGATGACCCACTCGGTGGCGGGCAA > 1:12006917/1‑35 ACGACGCGGAGATGACCCACTCGGTGGCGGGGAAA > 1:19707923/1‑35 ACGACGCGGAGATGACCCACTCGGTGGCGGGGAAA > 1:18888920/1‑35 CGACGCGGAGATGACCCACTCGGTGGCGGGGAAcg > 1:10985356/1‑33 CGACGCGGAGATGACCCACTCGGTGGCGGGGAAAG > 1:4835612/1‑35 GACGCGGAGATGACCCACTCGGTGGCGGGGAAAGG > 1:2370003/1‑35 ACGCGGAGATGACCCACTCGGTGGCGGGGAAAGtc > 1:19763980/1‑33 ACGCGGAGATGACCCACTCGGTGGCGGGGAAAGGC > 1:6127730/1‑35 ACGCGGAGATGACCCACTCGGTGGCGGGGAAAGGC > 1:14950423/1‑35 CGCGGAGATGACCCACTCGGTGGCGGGGAAAGtac > 1:7814621/1‑32 CGCGGAGATGACCCACTCGGTGGCGGGGAAAGTCT > 1:4942248/1‑35 CGCGGAGATGACCCACTCGGTGGCGGGGAAAGGCT > 1:18593356/1‑35 CGGAGATGACCCACTCGGTGGCGGGGAAAGGCTac > 1:16092821/1‑33 GGCGGGGAAAGGCTGCATTATGGGCAGTGCGCACC < 1:3411879/35‑1 GGCGGGGAAAGGCTGCATTATGGGCAGGGCGCACC > 1:6679585/1‑35 GCGGGGAAAGGCTGCATTATGGGCAGTGCGCACCA < 1:17803131/35‑1 GCGGGGAAAGGCTGCATTATGGGCAGTGCGCACCA < 1:2507790/35‑1 GCGGGGAAAGGCTGCATTATGGGCAGTGCGCACCA < 1:5235670/35‑1 GCGGGGAAAGGCTGCATTATGGGCAGTGCGCACCA < 1:18292087/35‑1 GCGGGGAAAGGCTGCATTATGGGCAGGGCGCACCA > 1:12720598/1‑35 CGGGGAAAGGCTGCATTATGGGCAGTGGGCACCAG > 1:1804263/1‑35 CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAG > 1:3327994/1‑35 CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAG < 1:10934193/35‑1 CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAG < 1:4943085/35‑1 CGGGGAAAGGCTGCATTATGGGCAGGGCGCACCAG > 1:16935372/1‑35 CGGGGAAAGGCTGCATTATGGGCAGGGCGCACCAG > 1:15502400/1‑35 GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGC > 1:13849343/1‑35 GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGC < 1:19891746/35‑1 GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGC < 1:15441257/35‑1 GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGC > 1:16020055/1‑35 GGGAAAGGCTGCATTATGGGCAGTGCGCACCCGCG > 1:11220249/1‑35 GGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCG < 1:14548721/35‑1 GGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCG < 1:20255355/35‑1 GGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCG < 1:9999214/35‑1 GAAGATGACGACGACGCGGAGATGACCCACTCGGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1204705‑1204666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCG > REL606/3975303‑3975336 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |