New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 415489872 (0.700)7 (0.080) 5/42 NT 8.7% intergenic (‑261/‑101) coaA/thrU pantothenate kinase/tRNA‑Thr
?REL606 4351442 = 84 (0.930)intergenic (+50/‑88) groEL/yjeI chaperonin GroEL/hypothetical protein

Only 100 of 137 total aligned reads displayed.

TGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATA  >  REL606/4154864‑4154932
                                  |                                  
tGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTG                                    >  1:15197735‑M1/1‑35 (MQ=255)
tGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTG                                    <  1:12141354‑M1/35‑1 (MQ=255)
tGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTG                                    <  1:15861427‑M1/35‑1 (MQ=255)
 gAAAAAGTGTTCTAATCTGCCCTCCGTTCGGCTGg                                   >  1:10742968‑M1/1‑34 (MQ=255)
 gAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGt                                   <  1:13975326/35‑1 (MQ=255)
 gAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGt                                   <  1:5474895/35‑1 (MQ=255)
 gAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGg                                   >  1:7929560‑M1/1‑34 (MQ=255)
 gAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGg                                   >  1:953809‑M1/1‑34 (MQ=255)
  aaaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGgg                                  >  1:2394914‑M1/1‑33 (MQ=255)
  aaaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGgg                                  >  1:15625991‑M1/1‑33 (MQ=255)
  aaaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGgg                                  >  1:15244574‑M1/1‑33 (MQ=255)
   aaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGttt                                 <  1:8481959/35‑1 (MQ=255)
   aaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGttt                                 <  1:10236712/35‑1 (MQ=255)
   aaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGggt                                 >  1:3881867‑M1/1‑32 (MQ=255)
   aaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGggt                                 >  1:6972542‑M1/1‑32 (MQ=255)
   aaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGggg                                 >  1:314237‑M1/1‑32 (MQ=255)
   aaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGggg                                 >  1:1183860‑M1/1‑32 (MQ=255)
   aaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGggg                                 >  1:18848101‑M1/1‑32 (MQ=255)
    aaaGTGTGCTAATCTGCCCTCCGTTCGGCTGggtg                                >  1:1925384‑M1/1‑31 (MQ=255)
    aaaGTGTGCTAATCTGCCCTCCGTTCGGCTGgggg                                >  1:6602774‑M1/1‑31 (MQ=255)
    aaaGTGTGCTAATCTGCCCTCCGTTCGGCTGTttc                                <  1:13729326/35‑1 (MQ=255)
     aaGTGTGCTAATCTGCCCTCCGTTCGGCTGggtgt                               >  1:15280077‑M1/1‑30 (MQ=255)
     aaGTGTGCTAATCTGCCCTCCGTTCGGCTGgggtt                               >  1:5410414‑M1/1‑30 (MQ=255)
     aaGTGTGCTAATCTGCCCTCCGTTCGGCTGggggt                               >  1:19241495‑M1/1‑30 (MQ=255)
     aaGTGTGCTAATCTGCCCTCCGTTCGGCTGTttct                               <  1:19358589/35‑1 (MQ=255)
     aaGTGTGCTAATCTGCCCTCCGTTCGGCTGTttct                               <  1:2145132/35‑1 (MQ=255)
     aaGTGTGCTAATCTGCCCTCCGTTCGGCTGTttct                               <  1:4414328/35‑1 (MQ=255)
      aGTGTGCTAATCTGCCCTCCGTTCGGCTGgggttt                              >  1:10071096‑M1/1‑29 (MQ=255)
      aGTGTGCTAATCTGCCCTCCGTTCGGCTGTttctt                              <  1:762541/35‑1 (MQ=255)
      aGTGTGCTAATCTGCCCTCCGTTCGGCTGTttctt                              <  1:14674988/35‑1 (MQ=255)
       gtgtGCTAATCTGCCCTCCGTTCGGCTGggtgttt                             >  1:4646702‑M1/1‑28 (MQ=255)
       gtgtGCTAATCTGCCCTCCGTTCGGCTGTttcttc                             <  1:14007051/35‑1 (MQ=255)
        tgtgCTAATCTGCCCTCCGTTCGGCTGggtgtttt                            >  1:10508596‑M1/1‑27 (MQ=255)
        tgtgCTAATCTGCCCTCCGTTCGGCTGggggtttt                            >  1:6766460‑M1/1‑27 (MQ=255)
        tgtgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCa                            <  1:18176119/35‑1 (MQ=255)
         gtgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCAt                           <  1:8401186/35‑1 (MQ=255)
         gtgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCAt                           <  1:18652499/35‑1 (MQ=255)
          tgCTAATCTGCCCTCCGTTCGGCTGggtgtttttc                          >  1:5779491‑M1/1‑25 (MQ=255)
          tgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATc                          <  1:12162921/35‑1 (MQ=255)
          tgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATc                          <  1:12429190/35‑1 (MQ=255)
          tgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATc                          <  1:20545619/35‑1 (MQ=255)
          tgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATc                          <  1:17802867/35‑1 (MQ=255)
          tgCTAATCTGCACTCCGTTCGGCTGTTTCTTCATc                          <  1:9402898/35‑1 (MQ=255)
           gCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCg                         <  1:12564874/35‑1 (MQ=255)
           gCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCg                         <  1:7511362/35‑1 (MQ=255)
            cTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCgt                        <  1:10466548/35‑1 (MQ=255)
            cTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCgt                        <  1:13262191/35‑1 (MQ=255)
             tAATCTGCCCTCCGTTCGGCTGTTTCTTCATCgtg                       <  1:19597814/35‑1 (MQ=255)
             tAATCTGCCCTCCGTTCGGCTGTTTCTTCATCgtg                       <  1:5918150/35‑1 (MQ=255)
              aaTCTGCCCTCCGTTCGGCTGggtgtttttctttt                      >  1:2005270‑M1/1‑21 (MQ=255)
              aaTCTGCCCTCCGTTCGGCTGTTTCTTCATCgtgt                      <  1:2396836/35‑1 (MQ=255)
              aaTCTGCCCTCCGTTCGGCTGTTTCTTCATCgtgt                      <  1:10034128/35‑1 (MQ=255)
               aTCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTc                     <  1:7485177/35‑1 (MQ=255)
                 cTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGc                   <  1:9456642/35‑1 (MQ=255)
                 cTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGc                   <  1:16041776/35‑1 (MQ=255)
                 cTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGc                   <  1:1699212/35‑1 (MQ=255)
                  tGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCa                  <  1:17511155/35‑1 (MQ=255)
                  tGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCa                  <  1:16727498/35‑1 (MQ=255)
                   gCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCAt                 <  1:20485548/35‑1 (MQ=255)
                    cccTCCGTTCGGCTGTTTCTTCATCGTGTCGCATa                <  1:8752302/35‑1 (MQ=255)
                    cccTCCGTTCGGCTGTTTCTTCATCGTGTCGCATa                <  1:20283952/35‑1 (MQ=255)
                    cccTCCGTTCGGCTGTTTCTTCATCGTGTCGCATa                <  1:10137086/35‑1 (MQ=255)
                     ccTCCGTTCGGCTGTTTCTTCATCGTGTCGCATaa               <  1:5302761/35‑1 (MQ=255)
                     ccTCCGTTCGGCTGTTTCTTCATCGTGTCGCATaa               <  1:20426788/35‑1 (MQ=255)
                     ccTCCGTTCGGCTGTTTCTTCATCGTGTCGCATaa               <  1:6591660/35‑1 (MQ=255)
                      cTCCGTTCGGCTGTTTCTTCATCGTGTCGCATaaa              <  1:16756537/35‑1 (MQ=255)
                      cTCCGTTCGGCTGTTTCTTCATCGTGTCGCATaaa              <  1:11445679/35‑1 (MQ=255)
                       tCCGTTCGGCTGTTTCTTCATCGTGTCGCATaaaa             <  1:13638936/35‑1 (MQ=255)
                       tCCGTTCGGCTGTTTCTTCATCGTGTCGCATaaaa             <  1:6896619/35‑1 (MQ=255)
                        ccGTTCGGCTGTTTCTTCATCGTGTCGCATAAAAt            <  1:7280410/35‑1 (MQ=255)
                        ccGTTCGGCTGTTTCTTCATCGTGTCGCATAAAAt            <  1:11055681/35‑1 (MQ=255)
                        ccGTTCGGCTGTTTCTTCATCGTGTCGCATAAAAt            <  1:18545286/35‑1 (MQ=255)
                         cGTTCGTCTGTTTCTTCATCGTGTCGCATAAAAtg           <  1:12293142/35‑1 (MQ=255)
                         cGTTCGGCTGTTTCTTCATCGTGTCGCATAAAAtg           <  1:14455731/35‑1 (MQ=255)
                         cGTTCGGCTGTTTCTTCATCGTGTCGCATAAAAtg           <  1:5904040/35‑1 (MQ=255)
                         cGTTCGGCTGTTTCTTCATCGTGTCGCATAAAAtg           <  1:2656713/35‑1 (MQ=255)
                          gTTCGGCTGTTTCTTCATCGTGTCGCATAAAAtgt          <  1:1356473/35‑1 (MQ=255)
                          gTTCGGCTGTTTCTTCATCGTGTCGCATAAAAtgt          <  1:19885083/35‑1 (MQ=255)
                          gTTCAGCTGTTTCTTCATCGTGTCGCATAAAAtgt          >  1:13927965/1‑35 (MQ=255)
                           ttCGGCTGTTTCTTCATCGTGTCGCATAAAAtgtg         <  1:14032030/35‑1 (MQ=255)
                           ttCGGCTGTTTCTTCATCGTGTCGCATAAAAtgtg         <  1:6663507/35‑1 (MQ=255)
                            tCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGa        <  1:18486819/35‑1 (MQ=255)
                             cGGCTGTTTCTTCATCGTGTCGCATAAAGTGTGAc       <  1:3121465/35‑1 (MQ=255)
                             cGGCTGTTTCTTCATCGTGTCGCATAAAATGTGAc       <  1:11895344/35‑1 (MQ=255)
                               gCTGTTTCTTCATCGTGTCGCATAAAATGTGACCa     <  1:9627204/35‑1 (MQ=255)
                               gCTGTTTCTTCATCGTGTCGCATAAAATGTGACCa     >  1:8001329/1‑35 (MQ=255)
                               gCTGTTTCTTCATCGTGTCGCATAAAATGTGACCa     >  1:11313119/1‑35 (MQ=255)
                               gCTGTTTCTTCATCGTGTCGCATAAAATGTGACCa     >  1:15591657/1‑35 (MQ=255)
                               gCTGTTTCTTCATCGTGTCGCATAAAATGTGACCa     <  1:1981784/35‑1 (MQ=255)
                                cTGTTTCTTCATCGTGTCGCATAAAATGTGACCaa    >  1:9594736/1‑35 (MQ=255)
                                 tGTTTCTTCATCGTGTCGCATAAAATGTGACCAAt   >  1:15505502/1‑35 (MQ=255)
                                 tGTTTCTTCATCGTGTCGCATAAAATGTGACCAAt   >  1:4168149/1‑35 (MQ=255)
                                 tGTTTCTTCATCGTGTCGCATAAAATGTGACCAAt   >  1:4040961/1‑35 (MQ=255)
                                 tGTTTCTTCATCGTGTCGCATAAAATGTGACCAAt   >  1:2897502/1‑35 (MQ=255)
                                 tGTTTCTTCATCGTGTCGCATAAAATGTGACCAAt   <  1:20044701/35‑1 (MQ=255)
                                 tGTTTCTTCATCGTGTCGCATAAAATGTGACCAAt   >  1:18814498/1‑35 (MQ=255)
                                  gTTTCTTCATCGTGTCGCATAAAATGTGACCAATa  <  1:6775343/35‑1 (MQ=255)
                                  gTTTCTTCATCGTGTCGCATAAAATGTGACCAATa  <  1:11668526/35‑1 (MQ=255)
                                  gTTTCTTCATCGTGTCGCATAAAATGTGACCAATa  >  1:11575021/1‑35 (MQ=255)
                                  gTTTCTTCATCGTGTCGCATAAAATGTGACCAATa  <  1:14115472/35‑1 (MQ=255)
                                  |                                  
TGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATA  >  REL606/4154864‑4154932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.