New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 225795 =119 (1.160)11 (0.130) 3/40 NT 13.7% coding (123/573 nt) gmhB hypothetical protein
?REL606 2126049 = 40 (0.470)coding (187/1041 nt) gatD galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding

Only 100 of 202 total aligned reads displayed.

AATTTATCGACGGTGTTATTGACGCCATGCGCGAGCTAAAAAAAATGGGGTTTGCGCTGGTGGTAGTAA  >  REL606/225761‑225829
                                  |                                  
tattatccaataacgttaggccatgaatttagcgg                                    <  1:7972838‑M1/1‑1 (MQ=255)
tattatccaataacgttaggccatgaatttagcgg                                    <  1:13137163‑M1/1‑1 (MQ=255)
aaTTTATCGACGGTGTTATTGACGCCATGCGCGAg                                    <  1:537617/35‑1 (MQ=255)
aaTTTATCGACGGTGTTATTGACGCCATGCGCGAg                                    <  1:17228644/35‑1 (MQ=255)
 attatccaataacgttaggccatgaatttagcgGc                                   <  1:17589487‑M1/2‑1 (MQ=255)
 aTTTATCGACGGTGTTATTGACGCCATGCGCGAGc                                   <  1:3253313/35‑1 (MQ=255)
  tttATCGACGGTGTTATTGACGCCATGCGCGAGCt                                  <  1:11690858/35‑1 (MQ=255)
  ttatccaataacgttaggccatgaatttagcgGCt                                  <  1:1641078‑M1/3‑1 (MQ=255)
   ttATCGACGGTGTTATTGACGCCATGCGCGAGCTa                                 <  1:9769870/35‑1 (MQ=255)
   tatccaataacgttaggccatgaatttagcgGCTa                                 <  1:13497523‑M1/4‑1 (MQ=255)
    atccaataacgttaggccatgaatttagcgGGTaa                                <  1:8364050‑M1/5‑1 (MQ=255)
    atccaataacgttaggccatgaatttagcgGCTaa                                <  1:10118338‑M1/5‑1 (MQ=255)
     tccaataacgttaggccatgaatttagcgGCTaaa                               <  1:1335933‑M1/6‑1 (MQ=255)
     aTCGACGGTGTTATTGACGCCATGCGCGAGCTaaa                               <  1:11489004/35‑1 (MQ=255)
     aTCGACAGTGTTATTGACGCCATGCGCGAGCTaaa                               <  1:291323/35‑1 (MQ=255)
      tCGACTGTGTTATTGACGCCATGCGCGAGCTaaaa                              <  1:359018/35‑1 (MQ=255)
      tCGACGGTGTTATTGACGCCATGCGTGAGCTaaaa                              >  1:3269260/1‑35 (MQ=255)
      tCGACGGTGTTATTGACGCCATGCGCGAGCTaaaa                              <  1:13209343/35‑1 (MQ=255)
       caataacgttaggccatgaatttagcgGCTaaaaa                             <  1:4017316‑M1/8‑1 (MQ=255)
       caataacgttaggccatgaatttagcgGCTaaaaa                             <  1:471850‑M1/8‑1 (MQ=255)
       caataacgttaggccatgaatttagcgGCTaaaaa                             <  1:10008518‑M1/8‑1 (MQ=255)
       cGACGGTGTTATTGACGCCATGCGCGGGGTaaaaa                             >  1:14259218/1‑35 (MQ=37)
       cGACGGTGTTATTGACGCCATGCGCGAGCTaaaaa                             >  1:6069676/1‑35 (MQ=255)
       cGACGGTGTTATTGACGCCATGCGCGAGCTaaaaa                             <  1:14634543/35‑1 (MQ=255)
       cGACGGTGTTATTGACGCCATGCGCGAGCTaaaaa                             <  1:2138675/35‑1 (MQ=255)
        gACGGTGTTATTGACGCCATGCGCGAGCTaaaaaa                            >  1:9535969/1‑35 (MQ=255)
        gACGGTGTTATTGACGCCATGCGCGAGCTaaaaaa                            >  1:9371669/1‑35 (MQ=255)
        gACGGTGTTATTGACGCCATGCGCGAGCTaaaaaa                            >  1:8953192/1‑35 (MQ=255)
        gACGGTGTTATTGACGCCATGCGCGAGCTaaaaaa                            >  1:5450185/1‑35 (MQ=255)
        gACGGTGTTATTGACGCCATGCGCGAGCTaaaaaa                            <  1:18875024/35‑1 (MQ=255)
         aCGGTGTTATTGACGCCATGCGCGAGCTaaaaaaa                           <  1:3391736/35‑1 (MQ=255)
         aCGGTGTTATTGACGCCATGCGCGAGCTaaaaaaa                           >  1:12492281/1‑35 (MQ=255)
         aCGGTGTTATTGACGCAATGCGCGAGCTaaaaaaa                           <  1:11048710/35‑1 (MQ=255)
         aCGGTGTTACTGACGCCATGCGCGAGCTaaaaaaa                           >  1:15608329/1‑35 (MQ=255)
          taacgttaggccatgaatttagcggctaaaaatat                          <  1:15862848‑M1/11‑4 (MQ=255)
          cGGTGTTATTGACGCCATGCGCGAGCTaaaaaaaa                          >  1:10741932/1‑35 (MQ=255)
          cGGTGTTATTGACGCCATGCGCGAGCTaaaaaaaa                          <  1:3047153/35‑1 (MQ=255)
          cGGTGTTATTGACGCCATGCGCGAGCTaaaaaaaa                          >  1:2114259/1‑35 (MQ=255)
          cGGTGTTATTGACGCCATGCGCGAGCTaaaaaaaa                          >  1:19582470/1‑35 (MQ=255)
          cGGTGTTATTGACGCCATGCGCGAGCTaaaaaaaa                          >  1:18124384/1‑35 (MQ=255)
           ggTGTTATTGACGCCATGCGCGAGCTAAAAAAAAt                         >  1:6309340/1‑35 (MQ=255)
           ggTGTTATTGACGCCATGCGCGAGCTAAAAAAAAt                         >  1:13876562/1‑35 (MQ=255)
            gtgtTATTGACGCCATGCGCGAGCTAAAAAAAATg                        >  1:774604/1‑35 (MQ=255)
             tgtTATTGACGCCATGCGCTAGCTAAAAAAAATgg                       >  1:5154484/1‑35 (MQ=255)
             tgtTATTGACGCCATGCGCGAGCTAAAAAAAATgg                       <  1:16701791/35‑1 (MQ=255)
             tgtTATTGACGCCATGCGCGAGCTAAAAAAAATgg                       <  1:12237673/35‑1 (MQ=255)
             cgttaggccatgaatttagcggctaaaaaaaaatg                       <  1:10886374‑M1/14‑4 (MQ=255)
              gttaggccatgaatttagcgGCTAAAAAaaataag                      <  1:2766737‑M1/15‑4 (MQ=255)
              gtcaTTGACGCCATGCGCGAGCTAAAAAAAATggg                      >  1:7266986/4‑35 (MQ=255)
              gtTATTGACGCCATGCGCGATCTAAAAAAAATggg                      <  1:19906889/35‑1 (MQ=255)
               ttATTGACGCCATGCGCGAGCTAAAAAAAATgggg                     <  1:18506155/35‑1 (MQ=255)
               ttATTGACGCCATGCGCGAGCTAAAAAAAATgggg                     >  1:14366034/1‑35 (MQ=255)
               ttATTGACGCCATGCGCAAGCTAAAAAAAATgggg                     <  1:7521426/35‑1 (MQ=255)
                tATTGACGCCATGCGCGAGCTAAAAAAAATGGGGt                    <  1:6940044/35‑1 (MQ=255)
                tATTGACGCCATGCGCGAGCTAAAAAAAATGGGGt                    <  1:16900506/35‑1 (MQ=255)
                tATTGACGCCATGCGCGAGCTAAAAAAAATGGGGt                    >  1:5581668/1‑35 (MQ=255)
                 aTTGACGCCATGCGCGAGCTAAAAAAAATGGGGtt                   >  1:7859868/1‑35 (MQ=255)
                 aTTGACGCCATGAGCGAGCTAAAAAAAATGGGGtt                   <  1:2628859/35‑1 (MQ=255)
                   tGACGCCATGCGCGAGCTAAAAAAAATGGGGTTTg                 <  1:10880659/35‑1 (MQ=255)
                   tGACGCCATGCGCGAGCTAAAAAAAATGGGGTTTg                 >  1:16035401/1‑35 (MQ=255)
                   tGACGCCATGCGCGAGCTAAAAAAAATGGGGTTTg                 <  1:14766690/35‑1 (MQ=255)
                   tGACGCCATGCGCGAGCTAAAAAAAATGGGGTTTg                 >  1:18791154/1‑35 (MQ=255)
                   tGACGCCATGAGCGAGCTAAAAAAAATGGGGTTTg                 <  1:8779819/35‑1 (MQ=255)
                    gACGCCATGCGCGAGCTAAAAAAAATGGGGTTTgc                <  1:14418758/35‑1 (MQ=255)
                    gACGCCATGCGCGAGCTAAAAAAAATGGGGTTTgc                <  1:5036769/35‑1 (MQ=255)
                    gACGCCATGCGCGAGCTAAAAAAAATGGGGTTTgc                <  1:4380092/35‑1 (MQ=255)
                    gACGCCATGCGCGAGCTAAAAAAAATGGGGTTTgc                <  1:15365808/35‑1 (MQ=255)
                     aCGCCATGCGCGTGCTAAAAAAAATGGGGTTTgcg               >  1:635573/1‑35 (MQ=255)
                     aCGCCATGCGCGAGCTAAAAAAAATGGGGTTTgcg               <  1:6794824/35‑1 (MQ=255)
                     aCGCCATGGCGAGCTAAAAAAAATGGGGTTTgcgc              >  1:14975137/1‑35 (MQ=37)
                      cGCCATGCGCGAGCTAAAAAAAATGGGGTTTgcgc              <  1:12898783/35‑1 (MQ=255)
                       gCCATGCGCGAGCTAAAAAAAATGGGTTTTGCGCt             >  1:17000818/1‑35 (MQ=255)
                       gCCATGCGCGAGCTAAAAAAAATGGGGTTTGCGCt             >  1:11076312/1‑35 (MQ=255)
                       gCCATGCGCGAGCTAAAAAAAATGGGGTTTGCGCt             >  1:5189537/1‑35 (MQ=255)
                        ccATGCGCGAGCTAAAAAAAATGGGGTTTGCGCtg            <  1:3600081/35‑1 (MQ=255)
                        ccATGCGCGAGCTAAAAAAAATGGGGTTTGCGCtg            <  1:20433017/35‑1 (MQ=255)
                         cATGCGCTAGCTAAAAAAAATGGGGTTTGCGCtgg           >  1:11264359/1‑35 (MQ=255)
                         cATGCGCGAGCTAAAAAAAATGGGGTTTGCGCtgg           >  1:15932284/1‑35 (MQ=255)
                         cATGCGCGAGCTAAAAAAAATGGGGTTTGCGCtgg           <  1:6603406/35‑1 (MQ=255)
                         cATGCGCGAGCTAAAAAAAATGGGGTTTGCGCagg           >  1:7107314/1‑35 (MQ=255)
                          aTGCGCGAGCTAAAAAAAATGGGGTTTGCGCtggt          >  1:18288960/1‑35 (MQ=255)
                          aTGCGCGAGCTAAAAAAAATGGGGTTTGCGCtggt          >  1:7659573/1‑35 (MQ=255)
                          aTGCGCGAGCTAAAAAAAATGGGGTTTGCGCtggt          <  1:4574269/35‑1 (MQ=255)
                           tGCGCGAGCTAAAAAAAATGGGGTTTGCGCtggtg         <  1:18147402/35‑1 (MQ=255)
                           tGCGCGAGCTAAAAAAAATGGGGTTTGCGCtggtg         <  1:13727826/35‑1 (MQ=255)
                           tGCGCGAGCTAAAAAAAATGGGGTTTGCGCtggtg         <  1:381520/35‑1 (MQ=255)
                             ctcgAGCTAAAAAAAATGGGGTTTGCGCTggtggt       <  1:9481690/33‑1 (MQ=255)
                              gcgAGCTAAAAAAAATGGGGTTTGCGCTGGTGgta      <  1:19301596/35‑1 (MQ=255)
                               cgAGCTAAAAAAAATGGGGTTTGCGCTGGTGgtag     <  1:10473151/35‑1 (MQ=255)
                               cgAGCTAAAAAAAATGGGGTTTGCGCTGGTGgtag     <  1:8677694/35‑1 (MQ=255)
                                gAGCTAAAAAAAATGGGGTTTGCGCTGGTGgtagt    <  1:10571346/35‑1 (MQ=255)
                                gAGCTAAAAAAAATGGGGTTTGCGCTGGTGgtagt    <  1:4926569/35‑1 (MQ=255)
                                gAGCTAAAAAAAATGGGGTTTGCGCTGGTGggagt    >  1:18709925/1‑35 (MQ=255)
                                gAGCTAAAAAAAATGGGGTTTGCGCTGGTGggagg    >  1:12312551/1‑34 (MQ=255)
                                gAGCTAAAAAAAATGGGGTTTGCGCTGGTGggagg    >  1:9289236/1‑34 (MQ=255)
                                 aGCTAAAAAAAATGGGGTTTGCGCTGGTGgtagta   <  1:10221554/35‑1 (MQ=255)
                                 aGCTAAAAAAAATGGGGTTTGCGCTGGTGggagga   >  1:5092617/1‑33 (MQ=37)
                                  GCTAAAAAAAATGGGGTTTGCGCTGgtggtaggaa  <  1:6685738‑M1/35‑4 (MQ=255)
                                  GCTAAAAAAAATGGGGTTTGCGCTGGTGGTAGTaa  >  1:15298598‑M1/1‑35 (MQ=255)
                                  GCTAAAAAAAATGGGGTTTGCGCTGGTGGTAGTaa  >  1:3690584‑M1/1‑35 (MQ=255)
                                  |                                  
AATTTATCGACGGTGTTATTGACGCCATGCGCGAGCTAAAAAAAATGGGGTTTGCGCTGGTGGTAGTAA  >  REL606/225761‑225829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.