New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 924268 =101 (0.980)7 (0.090) 3/36 NT 13.1% coding (722/1431 nt) ybjT conserved protein with NAD(P)‑binding Rossmann‑fold domain
?REL606 = 3633290 17 (0.220)coding (37/1005 nt) dppF dipeptide transporter

ACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTAC  >  REL606/3633256‑3633322
                                  |                                 
aCCGGATAATGTTTTTTCAGGTCGATAGCCTGCaa                                   >  1:16847005/1‑35 (MQ=255)
aCCGGATAATGTTTTTTCAGGTCGATAGCCTGCaa                                   >  1:18093414/1‑35 (MQ=255)
aCCGGATAATGTTTTTTCAGGTCGATAGCCTGCaa                                   >  1:14030429/1‑35 (MQ=255)
 ccGGATAATGTTTTTTCAGGTCGATAGCCTGCAAc                                  <  1:7649049‑M2/35‑2 (MQ=255)
 ccGGATAATGTTTTTTCAGGTCGATAGCCTGCAAc                                  <  1:6916132‑M2/35‑2 (MQ=255)
 ccGGATAATGTTTTTTCAGGTCGATAGCCTGCAAc                                  <  1:6017402‑M2/35‑2 (MQ=255)
 ccGGATAATGTTTTTTCAGGTCGATAGCCTGCAAc                                  <  1:1838396‑M2/35‑2 (MQ=255)
 ccGGATAATGTTTTTTCAGGTCGATAGCCTGCAAc                                  <  1:20487184‑M2/35‑2 (MQ=255)
  cGGATAATGTTTTTTCAGGTCGATAGCCTGCAAca                                 <  1:15077800‑M2/35‑3 (MQ=255)
  cGGATAATGTTTTTTCAGGTCGATAGCCTGCAAca                                 <  1:14798728‑M2/35‑3 (MQ=255)
  cGGATAATGTTTTTTCAGGTCGATAGCCTGCAAca                                 <  1:1164270‑M2/35‑3 (MQ=255)
  cGGATAATGTTTTTTCAGGTCGATAGCCTGCAAca                                 <  1:13347220‑M2/35‑3 (MQ=255)
   ggATAATGTTTTTTCAGGTCGATAGCCTGCAAcag                                <  1:1590037‑M2/35‑4 (MQ=255)
   ggATAATGTTTTTTCAGGTCGATAGCCTGCAAcag                                >  1:14830038‑M2/1‑32 (MQ=255)
    gATAATGTTTTTTCAGGTCGATAGCCTGCAAcagc                               <  1:13923107‑M2/35‑5 (MQ=255)
    gATAATGTTTTTTCAGGTCGATAGCCTGCAAcagc                               <  1:12123491‑M2/35‑5 (MQ=255)
    gATAATGTTTTTTCAGGTCGATAGCCCGAAACAGc                               >  1:8768116/1‑35 (MQ=37)
     aTAATGTTTTTTCAGGTCGATAGCCTGCAAcagcg                              <  1:2867186‑M2/35‑6 (MQ=255)
     aTAATGTTTTTTCAGGTCGATAGCCTGCAAcagcg                              <  1:5962313‑M2/35‑6 (MQ=255)
     aTAATGTTTTTTCAGGTCGATAGCCTGCAAcagcg                              <  1:6452355‑M2/35‑6 (MQ=255)
     aTAATGTTTTTTCAGGTCGATAGCCTGCAAcagcg                              <  1:6820452‑M2/35‑6 (MQ=255)
     aTAATGTTTTTTCAGGTCGATAGCCTGCAAcagcg                              <  1:11150619‑M2/35‑6 (MQ=255)
      tAATGTTTTTTCAGGTCGATAGCCTGCAAcagcgg                             <  1:13421721‑M2/35‑7 (MQ=255)
      tAATGTTTTTTCAGGTCGATAGCCTGCAAcagcgg                             <  1:2615792‑M2/35‑7 (MQ=255)
       aaTGTTTTTTCAGGTCGATAGCCTGCAAcagctgg                            <  1:8356245‑M2/35‑8 (MQ=255)
       aaTGTTTTTTCAGGTCGATAGCCTGCAAcagcggg                            <  1:17623720‑M2/35‑8 (MQ=255)
       aaTGTTTTTTCAGGTCGATAGCCTGCAAcagcggg                            <  1:10178841‑M2/35‑8 (MQ=255)
        aTGTTTTTTCAGGTCGATAGCCTGCAATAGCGgtg                          >  1:19736189/1‑34 (MQ=255)
        aTGTTTTTTCAGGTCGATAGCCTGCAACAGCGgtt                          >  1:5097535/1‑35 (MQ=255)
        aTGTTTTTTCAGGTCGATAGCCTGCAACAGCGgtt                          >  1:5133978/1‑35 (MQ=255)
         tGTTTTTTCAGGTCGATAGCCTGCAAcagcgggtg                          <  1:10381634‑M2/35‑10 (MQ=255)
         tGTTTTTTCAGGTCGATAGCCTGCAAcagcgggtg                          <  1:8685552‑M2/35‑10 (MQ=255)
          gTTTTTTCAGGTCGATAGCCTGCAAcagcgggtgg                         <  1:13302546‑M2/35‑11 (MQ=255)
          gTTTTTTCAGGTCGATAGCCTGCAAcagcgggtgg                         <  1:14879530‑M2/35‑11 (MQ=255)
          gTTTTTTCAGGTCGATAGCCTGCAAcagcgggtgg                         <  1:8897055‑M2/35‑11 (MQ=255)
          gTTTTTTCAGGTCGATAGCCTGCAAcagcgggtgg                         <  1:9119237‑M2/35‑11 (MQ=255)
          gTTTTTTCAGGTCGATAGCCTGCAACAGCGgttgg                        >  1:15280766/1‑34 (MQ=255)
           ttttttCGGGTCTTTAGCCTGCAACAGCGgttgtt                       <  1:14752329/35‑1 (MQ=21)
           ttttttCAGGTCGATAGTCTGCAACAGCGgttgtt                       <  1:10974186/35‑1 (MQ=255)
           ttttttCAGGTCGATAGCCTGCAAcagcggctggg                        <  1:16784976‑M2/35‑12 (MQ=255)
           tttttcCAGGTTTTTAGCCTGCAACAGCGgttgtt                       <  1:6704924/35‑1 (MQ=16)
            tttttCAGGTCGATAGCCTGCAAcagcgggtgggg                       <  1:6791967‑M2/35‑13 (MQ=255)
            tttttCAGGTCGATAGCCTGCAACAGCGgttgggt                      >  1:16622491/1‑32 (MQ=255)
             ttttCAGGTCGATAGCCTGCAAcagcgggtggtgg                      <  1:2393945‑M2/35‑14 (MQ=255)
             ttttCAGGTCGATAGCCTGCAAcagcgggtggggg                      <  1:2718463‑M2/35‑14 (MQ=255)
             ttttCAGGTCGATAGCCTGCAAcagcgggtggggg                      <  1:5408788‑M2/35‑14 (MQ=255)
              tttCAGGTCGATAGCCTGCAAcagcgggtgggggg                     <  1:15752898‑M2/35‑15 (MQ=255)
              tttCAGGTCGATAGCCTGCAACAGCGGGTTTTGCa                    >  1:6553174/1‑35 (MQ=25)
               ttCAGGTCGATAGCCTGCAAcagcgggtggggggg                    <  1:1138612‑M2/35‑16 (MQ=255)
                tagggTCGTTAGCCTGCAACAGCGGTTGTTGCAgg                  <  1:11841135/32‑1 (MQ=25)
                tCAGGTCGTTAGCCTGCAACAGCGGTTGTTGCAgg                  <  1:11261603/35‑1 (MQ=255)
                 cAGGTCGATAGCCTTCAACAGCTGTTGTTGCGggg                 >  1:17218700/1‑35 (MQ=21)
                 cAGGTCGATAGCCTGCAAcagcgggtggggggggg                  <  1:5784655‑M2/35‑18 (MQ=255)
                 cAGGTCGATAGCCTGCAACAGCTGGTGTTGCAggg                 >  1:9081398/1‑35 (MQ=25)
                  aGGTCGATAGCCTGCAAcagcgggtgggggggggg                 <  1:1639495‑M2/35‑19 (MQ=255)
                   ggTCGTTAGCCTGCAACAGCGGTTGTTGCAGGGTg               <  1:17504693/35‑1 (MQ=255)
                   ggTCGTTAGCCTGCAACAGCGGTTGTTGCAGGGTg               <  1:7404354/35‑1 (MQ=255)
                   ggTCGATAGCCTGCAACAGCGGGTTGTGGCAgggg                >  1:5421535/1‑34 (MQ=21)
                    gTCGTTAGCCTGCAACAGCGGTTGTTGCAGGGTgg              <  1:12804006/35‑1 (MQ=255)
                    gTCGTTAGCCTGCAACAGCGGTTGTTGCAGGGTgg              <  1:13986630/35‑1 (MQ=255)
                         tAGCCTGCAAGAGCGGTTGTTGCAGGGTGGCctct         <  1:5000025/35‑1 (MQ=255)
                          aGCCTGCACCAGCGGTTGTTGCAGGGTGGCCTCtt        <  1:18201015/35‑1 (MQ=255)
                          aGCCTGCACCAGCGGTTGTTGCAGGGTGGCCTCtt        <  1:2339415/35‑1 (MQ=255)
                          aGCCTGCAACAGCGGTTGTTGCAGGTTGGCCTCtt        <  1:3070537/35‑1 (MQ=255)
                           gCCTGCAACAGCGGTTGTTGCAGGGTGACCTCTTg       <  1:4511909/35‑1 (MQ=255)
                            cttGCACCAGCGGTTGTTGCAGGGTGGCCTCTTGc      <  1:3040358/33‑1 (MQ=37)
                            ccTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGc      <  1:11538788/35‑1 (MQ=255)
                             cTGCAACAGCGGTTGTTGCAGGGTGGACTCTTGCg     <  1:13816597/35‑1 (MQ=255)
                                cAACAGCGGTTGTTGCAGGGTGGCATCTTGCGTAc  <  1:10385985/35‑1 (MQ=255)
                                  |                                 
ACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTAC  >  REL606/3633256‑3633322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.