New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1691508 =100 (0.970)7 (0.100) 3/34 NT 8.7% intergenic (+43/‑63) ydgR/gst putative tripeptide transporter permease/glutathionine S‑transferase
?REL606 = 1806767 76 (1.040)coding (233/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

Only 100 of 158 total aligned reads displayed.

CTTACCCGTTTCTCTGGCAATAATCGCGGTTAATTCGGCTTTATTGCTTTCCAGCAATCCGGCAAAGC  >  REL606/1806733‑1806800
                                  |                                 
cTTACCCGTTTCTCTGGCAATAATCGCGGTTAAtt                                   >  1:4653728/1‑35 (MQ=255)
cTTACCCGTTTCTCTGGCAATAATCGCGGTTAAtt                                   <  1:13616194/35‑1 (MQ=255)
cTTACCCGTTTCTCTGGCAATAATCGCGGTTAAtt                                   <  1:16068563/35‑1 (MQ=255)
cTTACCCGTTTCTCTGGCAATAATCGCGGTTAAtt                                   <  1:2503058/35‑1 (MQ=255)
 ttACCCGTTTCTCTGGCAATAATCGCGGTTAATTc                                  >  1:4508582‑M2/1‑34 (MQ=255)
 ttACCCGTTTCTCTGGCAATAATCGCGGTTAATTc                                  >  1:15967554‑M2/1‑34 (MQ=255)
 ttACCCGTTTCTCTGGCAATAATCGCGGTTAATTc                                  <  1:15320219‑M2/35‑2 (MQ=255)
 ttACCCGTTTCTCTGGCAATAATCGCGGTTAATTc                                  >  1:12812304‑M2/1‑34 (MQ=255)
 ttACCCGTTTCTCTGGCAATAATCGCGGTTAATTc                                  <  1:16917910‑M2/35‑2 (MQ=255)
  tACCCGTTTCTCTGGCAATAATCGCGGGTAAtttg                                 >  1:19898489/1‑33 (MQ=38)
   aCCCGTTTCTCTGGCAATAATCGCGGTTAATTcgg                                <  1:9540083‑M2/35‑4 (MQ=255)
    cccGTTTCTCTGGCAATAATCGCGGTTAATTcggc                               >  1:3806001‑M2/1‑31 (MQ=255)
    cccGTTTCTCTGGCAATAATCGCGGGTAATTcggc                               <  1:10167719‑M2/35‑5 (MQ=255)
     ccGTTTCTCTGGCAATAATCGCGGTTAATTcggct                              >  1:15141085‑M2/1‑30 (MQ=255)
     ccGTTTCTCTGGCAATAATCGCGGTTAATTcggct                              >  1:855929‑M2/1‑30 (MQ=255)
      cGTTTCTCTGGCAATAATCGCGGTTAATTcggctt                             <  1:6838462‑M2/35‑7 (MQ=255)
      cGTTTCTCTGGCAATAATCGCGGTTAATTcggctt                             <  1:2924524‑M2/35‑7 (MQ=255)
      cGTTTCTCTGGCAATAATCGCGGTTAATTcggctt                             >  1:13019330‑M2/1‑29 (MQ=255)
      cGTTTCTCTGGCAATAATCGCGGTTAATTcggctt                             >  1:15238557‑M2/1‑29 (MQ=255)
      cGTTTCTCTGGCAATAATCGCGGTTAATTcggctt                             <  1:19339706‑M2/35‑7 (MQ=255)
      cGTTTCTCTGGCAATAATCGCGGTTAATTcggctt                             <  1:10048728‑M2/35‑7 (MQ=255)
      cGTTTCTCTGGCAATAATCGCGGGTAATTCGGGtt                             >  1:10065201/1‑35 (MQ=38)
       gTTTCTCTGGCAATAATCGCGGTTAATTcggcttt                            <  1:9691574‑M2/35‑8 (MQ=255)
       gTTTCTCTGGCAATAATCGCGGTTAATTcggcttt                            <  1:6155334‑M2/35‑8 (MQ=255)
       gTTTCTCTGGCAATAATCGCGGGTAATTcggcttt                            <  1:15061296‑M2/35‑8 (MQ=255)
        tttCTCTGGCAATAATCGCGGTTAATTcggctttt                           <  1:7826416‑M2/35‑9 (MQ=255)
        tttCTCTGGCAATAATCGCGGTTAATTCGGCTTTa                           <  1:3880683/35‑1 (MQ=255)
        tttCTCTGGCAATAATCGCGGTTAATTCGGCTTTa                           <  1:13191664/35‑1 (MQ=255)
         ttCTCTGGCAATAATCGCTGTTAATTcggcttttt                          <  1:4040357‑M2/35‑10 (MQ=255)
         ttCTCTGGCAATAATCGCGGTTAATTcggcttttt                          <  1:6579571‑M2/35‑10 (MQ=255)
         ttCTCTGGCAATAATCGCGGTTAATTcggcttttt                          <  1:20147565‑M2/35‑10 (MQ=255)
         ttCTCTGGCAATAATCGCGGTTAATTCGGCTTTAt                          <  1:14761009/35‑1 (MQ=255)
         ttCTCTGGCAATAATCGCGGTTAATTCGGCTTTAt                          <  1:14105932/35‑1 (MQ=255)
          tctcTGGCAATAATCGCGGTTAATTcggctttttt                         <  1:10465239‑M2/35‑11 (MQ=255)
          tctcTGGCAATAATCGCGGTTAATTCGGCTTTAtt                         <  1:4356026/35‑1 (MQ=255)
          tctcTGGCAATAATCGCGGTTAATTCGGCTTTAtt                         <  1:20231554/35‑1 (MQ=255)
          tctcTGGCAATAATCGCGGTTAATTCGGCTTTAtt                         <  1:8899583/35‑1 (MQ=255)
           ctctGGCAATAATCGCGGTTAATTcggcttttttt                        <  1:2182189‑M2/35‑12 (MQ=255)
            tctGGCAATAATCGCGGTTAATTcggctttttttt                       <  1:14616768‑M2/35‑13 (MQ=255)
            tctGGCAATAATCGCGGTTAATTCGGCTTTATTGc                       <  1:16529590/35‑1 (MQ=255)
             ctGGCAATAATCGCGGTTAATTcggcttttttttc                      <  1:2201791‑M2/35‑14 (MQ=255)
              tGGCAATAATCGCGGTTAATTCGGCTTTATTGCtt                     <  1:4062223/35‑1 (MQ=255)
              tGGCAATAATCGCGGTTAATTCGGCTTTATTGCtt                     <  1:12325875/35‑1 (MQ=255)
               ggCAATAATCGCGGTTAATTcggcttttttttttt                    <  1:8636261‑M2/35‑16 (MQ=255)
               ggCAATAATCGCGGTTAATTCGGCTTTATTGCttt                    <  1:17903418/35‑1 (MQ=255)
                gCAATAATCGCGGTTAATTCGGCTTTTTTTCTTTc                   >  1:19735949/1‑35 (MQ=37)
                gCAATAATCGCGGTTAATTCGGCTTTATTGCTTTc                   <  1:12677501/35‑1 (MQ=255)
                 cAATAATCGCGGTTAATTcggcttttttttttttc                  <  1:16108775‑M2/35‑18 (MQ=255)
                 cAATAATCGCGGTTAATTCGGCTTTTTTTGTTTcc                  >  1:18194072/1‑35 (MQ=25)
                 cAATAATCGCGGTTAATTCGGCTTTATTGCTTTcc                  <  1:12519957/35‑1 (MQ=255)
                 cAATAATCGCGGTTAATTCGGCTTTATTGCTTTcc                  <  1:12355791/35‑1 (MQ=255)
                  aataatCGCGGTTAATTcggcttttttttttttca                 <  1:8309273‑M2/35‑19 (MQ=255)
                  aataatCGCGGTTAATTcggcttttttttttttca                 <  1:17298197‑M2/35‑19 (MQ=255)
                  aataatCGCGGTTAATTCGGCTTTATTGCTTTCCa                 <  1:9903986/35‑1 (MQ=255)
                  aataatCGCGGTTAATTCGGCTTTATTGCTTTCCa                 <  1:12787618/35‑1 (MQ=255)
                   ataatCGCGGTTAATTCGGCTTTTTTTTTTTCCAg                >  1:7762860/1‑35 (MQ=21)
                   ataatCGCGGTTAATTCGGCTTTATTGCTTTCCAg                <  1:18837658/35‑1 (MQ=255)
                   ataatCGCGGTTAATTCGGCTTTATTGCTTTCCAg                <  1:17779661/35‑1 (MQ=255)
                   ataatCGCGGTTAATTCGGCTTTATTGCTTTCAAg                <  1:10223797/35‑1 (MQ=255)
                    taatCGCGGTTAATTCGGCTTTATTGCTTTCCAGc               <  1:11776167/35‑1 (MQ=255)
                     aatCGCGGTTAATTCGGCTTTATTGCTTTCCAGCa              <  1:7243300/35‑1 (MQ=255)
                     aatCGCGGTTAATTCGGCTTTATTGCTTTCCAGCa              <  1:18727351/35‑1 (MQ=255)
                     aatCGCGGTTAATTCGGCTTTATTGCTTTCCAGCa              <  1:14567845/35‑1 (MQ=255)
                     aatCGCGGTTAATTCGGCTTTATTGCTTTCAAGCa              <  1:6200590/35‑1 (MQ=255)
                      atCGCGGTTAATTCGGCTTTATTGCTTTCCAGCaa             <  1:16668793/35‑1 (MQ=255)
                      atCGCGGTTAATTCGGCTTTATTGCTTTCCAGCaa             <  1:9648600/35‑1 (MQ=255)
                       tCGCGGTTAATTCGGCTTTATTGCTTTCCAGCAAt            <  1:16173786/35‑1 (MQ=255)
                       tCGCGGTTAATTCGGCTTTATTGCTTTCCAGCAAt            <  1:14429936/35‑1 (MQ=255)
                       tCGCGGTTAATTCGGCTTTATTGCTTTCCAGCAAt            <  1:19432162/35‑1 (MQ=255)
                        cgcgGTTAATTCGGCTTTATTGCTTTCCAGCAATc           <  1:3764010/35‑1 (MQ=255)
                        cgcgGTTAATTCGGCTTTATTGCTTTCCAGCAATc           <  1:12948736/35‑1 (MQ=255)
                        cgcgGTTAATTCGGCTTTATTGCTTTCCAGCAATc           <  1:129994/35‑1 (MQ=255)
                        cgcgGTTAATTCGGCTTTATTGCTTTCCAGCAATc           <  1:9377494/35‑1 (MQ=255)
                        cgcgGTTAATTCGGCTTTATTGCTTTCCAGCAATc           >  1:7389192/1‑35 (MQ=255)
                         gcgGTTAATTCGGCTTTATTGCTTTCCAGCAATcc          <  1:8193086/35‑1 (MQ=255)
                         gcgGTTAATTCGGCTTTATTGCTTTCCAGCAATcc          <  1:8993256/35‑1 (MQ=255)
                         gcgGTTAATTCGGCTTTATTGCTTTCCAGCAATcc          <  1:19588534/35‑1 (MQ=255)
                         gcgGTTAATTAGGCTTTATTGCTTTCCAGCAATcc          <  1:15094145/35‑1 (MQ=255)
                          cgGTTAATTCGGCTTTATTGCTTTCCAGCAATCCg         <  1:5137626/35‑1 (MQ=255)
                          cgGTTAATTCGGCTTTATTGCTTTCCAGCAATCCg         <  1:14790417/35‑1 (MQ=255)
                          cgGTTAATTCGGCTTTATTGCTTTCCAGCAATCCg         <  1:11951924/35‑1 (MQ=255)
                           ggTTAATTCGGCTTTATTGCTTTCCAGCAATTCgg        >  1:14249857/1‑35 (MQ=255)
                           ggTTAATTCGGCTTTATTGCTTTCCAGAAATCCgg        <  1:13106359/35‑1 (MQ=255)
                           ggTTAATTCGGCTTTATTGCTTTCCAGAAATCCgg        >  1:2570885/1‑35 (MQ=255)
                            gTTAATTCGGCTTTATTGCTTTCCAGCAATCCGGc       <  1:6431866/35‑1 (MQ=255)
                            gTTAATTCGGCTTTATTGCTTTCCAGCAATCCGGc       <  1:16173316/35‑1 (MQ=255)
                            gTTAATTCGGCTTTATTGCTTTCCAGCAATCCGGc       <  1:11058927/35‑1 (MQ=255)
                             ttAATTCGGCTTTATTGCTTTCCAGCAATCCGGCa      <  1:13240349/35‑1 (MQ=255)
                             ttAATTCGGCTTTATTGCTTTCCAGCAATCCGGCa      >  1:9795304/1‑35 (MQ=255)
                             ttAATTCGGCTTTATTGCTTTCCAGCAATCCGGCa      >  1:18419834/1‑35 (MQ=255)
                              tAATTCGGCTTTATTGCTTTCCAGCAATCCGGCaa     >  1:8729865/1‑35 (MQ=255)
                              tAATTCGGCTTTATTGCTTTCCAGCAATCCGGCaa     <  1:387102/35‑1 (MQ=255)
                               aaTTCGGCTTTATTGCTTTCCAGCAATCCGGCaaa    <  1:17430306/35‑1 (MQ=255)
                               aaTTCGGCTTTATTGCTTTCCAGCAATCCGGCaaa    <  1:9334961/35‑1 (MQ=255)
                               aaTTCGGCTTTATTGCTTTCCAGCAATCCGGCaaa    >  1:10254966/1‑35 (MQ=255)
                               aaTTCGGCTTTATTGCTTTCCAGCAATCCGGCaaa    <  1:14246251/35‑1 (MQ=255)
                                aTTCTGCTTTATTGCTTTCCAGCAATCCGGCAAAg   >  1:8850738/1‑35 (MQ=255)
                                aTTCGGCTTTATTGCTTTCCAGCAATCCGGCAAAg   >  1:9668962/1‑35 (MQ=255)
                                aTTCGGCTTTATTGCTTTCCAGCAATCCGGCAAAg   >  1:4188171/1‑35 (MQ=255)
                                 ttCGGCTTTATTGCTTTCCAGCAATCCGGCAAAGc  <  1:18948999/35‑1 (MQ=255)
                                  |                                 
CTTACCCGTTTCTCTGGCAATAATCGCGGTTAATTCGGCTTTATTGCTTTCCAGCAATCCGGCAAAGC  >  REL606/1806733‑1806800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.