New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 365501 = | 115 (1.120) | 5 (0.060) | 3/40 | NT | 6.1% | coding (1217/1221 nt) | sbmA | predicted transporter |
? | REL606 | = 3726074 | 57 (0.670) | coding (49/1545 nt) | yibO | phosphoglyceromutase |
TAGAGGATTGACGCGCGACATTACTTCTCCTTTTTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/365538‑365501 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagcCATAGCCATCCAGAATCACCAGTACCATAGGTTT < REL606/3726074‑3726041 TAGAGGATTGACGCGCGACATTACTTCTCCTTTTT > 1:18978572/1‑35 TAGAGGATTGACGCGCGACATTACTTCTCCTTTTT < 1:2944852/35‑1 TAGAGGATTGACGCGCGACATTACTTCTCCTTTTT < 1:15080349/35‑1 TAGAGGATTGACGCGCGACATTACTTCTCCTTTTT < 1:3131614/35‑1 TAGAGGATTGACGCGCGACATTACTTCTCCTTTTT < 1:12273350/35‑1 AGAGGATTGACGCGCGACATTACTTCTCCTTTTTA < 1:15919912/35‑1 AGAGGATTGACGCGCGACATTACTTCTCCTTTTTA > 1:13801455/1‑35 AGAGGATTGACGCGCGACATTACTTCTCCTTTTTA > 1:6393761/1‑35 AGAGGATTGACGCGCGACATTACTTCTCCTTTTTA < 1:9549031/35‑1 AGAGGATTGACGCGCGACATTACTTCTCCTTTTTA > 1:10812859/1‑35 AGAGGATTGACGCGCGACATTACTTCTCCTTTTTA < 1:19449805/35‑1 GAGGATTGACGCGCGACATTACTTCTCCTTTTTAG > 1:16392312/1‑35 GAGGATTGACGCGCGACATTACTTCTCCTTTTTAG > 1:18181049/1‑35 GAGGATTGACGCGCGACATTACTTCTCCTTTTTAG > 1:9435895/1‑35 GAGGATTGACGCGCGACATTACTTCTCCTTTTTAG > 1:12203471/1‑35 AGGATTGACGCGCGACATTACTTCTCCTTTTTAGC > 1:3547082/1‑35 AGGATTGACGCGCGACATTACTTCTCCTTTTTAGC < 1:2354122/35‑1 AGGATTGACGCGCGACATTACTTCTCCTTTTTAGC > 1:7855584/1‑35 AGGATTGACGCGCGACATTACTTCTCCTTTTTAGC < 1:15744304/35‑1 AGGATTGACGCGCGACATTACTTCTCCTTTTTAGC > 1:8376228/1‑35 AGGATTGACGCGCGACATTACTTCTCCTTTTTAGC > 1:2626674/1‑35 TTCTCCTTTTTAGCCATAGCCATCCAGAATCACCA < 1:2803368/35‑1 TTCTCCCTTTTAGCCATAGCCATCCAGAATCACCA < 1:8333522/35‑1 TCTCCTTTTTAGCCATAGCCATCCAGGATCACCAG < 1:5898566/35‑1 tttCTTTTTAGCCATAGCCATCCAGAATCACCAGT < 1:15154209/32‑1 tttCTTTTTAGCCATAGCCATCCAGAATCACCAGT < 1:17076010/32‑1 tTCCTTTTTAGCCATAGCCATCCAGAATCACCAGT < 1:10012098/34‑1 CTCCTTTTTAGCCATAGCCATCCAGAATCACCAGT < 1:8732291/35‑1 ttCTTTTTAGCCATAGCCATCCAGAATCACCAGTA < 1:16048898/33‑1 ttCTTTTTAGCCATAGCCATCCAGAATCACCAGTA < 1:9252627/33‑1 ttCTTTTTAGCCATAGCCATCCAGAATCACCAGTA < 1:18378934/33‑1 tcaTTTTTAGCCATAGCCATCCAGAATCACCAGTA < 1:9588102/32‑1 CTTTTTAGCCATAGCCATCCAGAATCACCAGTACC < 1:13950441/35‑1 TTTTAGCCATAGCCATCCAGAATCACCAGTACCAT < 1:6843407/35‑1 TTTTAGCCATAGCCATCCAGAATCACCAGTACCAT < 1:14808048/35‑1 TTTTAGCCATAGCCATCCAGAATCACCAGTACCAT < 1:11576618/35‑1 TTTAGCCATAGCCATCCAGAATCACCAGTACCATA < 1:13672568/35‑1 TTAGCCATAGCCATCCAGAATCACCAGTACCATAG < 1:7234896/35‑1 TAGCCATAGCCATCCAGAATCACCAGTACCATAtg > 1:8285652/1‑33 TAGCCATAGCCATCCAGAATCACCAGTACCATAGG < 1:7437240/35‑1 TAGCCATAGCCATCCAGAATCACCAGTACCATAGG < 1:19510781/35‑1 TAGCCATAGCCATCCAGAATCACCAGTACCATAGG > 1:8422214/1‑35 TAGCCATAGCAATCCAGAATCACCAGTACCATAGG < 1:16740348/35‑1 acCCATAGCCATCCAGAATCACCAGTACCATAGGT < 1:2515620/33‑1 AGCCATAGCCATCCAGAATCACCAGTACCATATGT > 1:1893226/1‑35 AGCCATAGCCATCCAGAATCACCAGTACCATAGGT < 1:13225122/35‑1 AGCCATAGCCATCCAGAATCACCAGTACCATAGGT < 1:1925829/35‑1 AGCCATAGCCATCCAGAATCACCAGTACCATAGGT > 1:12555162/1‑35 AGCCATAGCCATCCAGAATCACCAGTACCATAGGT < 1:11883301/35‑1 AGCCATAGCCATCCAGAATCACCAGTACCATAGGT < 1:9146118/35‑1 AGCCATAGCCATCCAGAATCACCAGTACCATAGGT > 1:5823136/1‑35 AGCCATAGCCATCCAGAATCACCAGTACCATAGGT < 1:18911531/35‑1 AGCCATAGCCATCCAGAATCACCAGTACCATAGGT > 1:18537103/1‑35 AGCCATAGCCATCCAGAATCACCAGTACCATAGGT < 1:8725512/35‑1 cCCATAGCCATCCAGAATCACCAGTACCATAGGTT < 1:18265341/34‑1 GCCATAGCCATCCAGAATCACCAGTACCATAGGTT < 1:12087621/35‑1 GCCATAGCCATCCAGAATCACCAGTACCATAGGTT > 1:1536955/1‑35 GCCATAGCCATCCAGAATCACCAGTACCATAGGTT < 1:17190513/35‑1 GCCATAGCCATCCAGAATCACCAGTACCATAGGTT < 1:10806026/35‑1 GCCATAGCCATCCAGAATCACCAGTACCATAGGTT > 1:13070369/1‑35 GCCATAGCCATCCAGAATCACCAGTACCATAGGTT > 1:8672027/1‑35 CCATAGCCATCCAGAATCACCAGTACCATAGGTTT > 1:10367937/1‑35 CCATAGCCATCCAGAATCACCAGTACCATAGGTTT > 1:6745865/1‑35 CCATAGCCATCCAGAATCACCAGTACCATAGGTTT > 1:6058868/1‑35 CCATAGCCATCCAGAATCACCAGTACCATAGGTTT > 1:4676166/1‑35 CCATAGCCATCCAGAATCACCAGTACCATAGGTTT > 1:14188222/1‑35 CCATAGCCATCCAGAATCACCAGTACCATAGGTTT < 1:15183140/35‑1 CCATAGCCATCCAGAATCACCAGTACCATAGGTTT < 1:18108296/35‑1 CCATAGCCATCCAGAATCACCAGTACCATAGGTTT > 1:18226268/1‑35 TAGAGGATTGACGCGCGACATTACTTCTCCTTTTTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/365538‑365501 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagcCATAGCCATCCAGAATCACCAGTACCATAGGTTT < REL606/3726074‑3726041 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |