New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1076727 =60 (0.580)8 (0.090) 5/40 NT 14.4% coding (1182/2547 nt) torA trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit
?REL606 3786648 = 45 (0.530)coding (75/339 nt) ECB_03525 conserved hypothetical protein

AACCAAAACCACCACCTGGCAGGCCAATTTGCCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1076764‑1076727
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcCTGGCCGCCAACTGTGATAACGGCATGTTTGAGC  >  REL606/3786648‑3786681
                                                                        
acCCAAAACCACCACCTGGCAGGCCAATTTGCCCC                                       <  1:16963798/33‑1
AACCAAAACCACCACCTGGCAGGCCAATTTGCCCC                                       >  1:14145970/1‑35
 ACCAAACCCACCACCTGGCAGGCCAATTTGCCCCA                                      <  1:8403974/35‑1
 ACCAAAACCACCACCTGGCAGGCCAATTTGCCCCA                                      >  1:350076/1‑35
 ACCAAAACCACCACCTGGCAGGCCAATTTGCCCCA                                      >  1:11915771/1‑35
 ACCAAAACCACCACCTGGCAGGCCAATTTGCCCCA                                      <  1:17054633/35‑1
  CCAAAACCACCACCTGGCAGGCCAATTTGCCCCAG                                     >  1:19299331/1‑35
  CCAAAACCACCACCTGGCAGGCCAATTTGCCCCAG                                     <  1:15772686/35‑1
   CAAACCCACCACCTGGCAGGCCAATTTGCCCCAGC                                    <  1:7384009/35‑1
   CAAACCCACCACCTGGCAGGCCAATTTGCCCCAGC                                    <  1:6972888/35‑1
   CAAACCCACCACCTGGCAGGCCAATTTGCCCCAGC                                    <  1:10086977/35‑1
   CAAAACCACCACCTGGCAGGCCAATTTGCCCCAGC                                    >  1:6678937/1‑35
                       CCAATTTGCCCCAGCCTGGCCGCCAACTGTGATAA                <  1:1599937/35‑1
                         AATTTCCCCCAGCCTGGCCGCCAACTGTGATAACG              <  1:9927840/35‑1
                         AATATGCCCCAGCCTGGCCGCCAACTGTGATAACG              <  1:10905499/35‑1
                         AATATGCCCCAGCCTGGCCGCCAACTGTGATAACG              <  1:9249030/35‑1
                          ATTTGGCCCAGCCTGGCCGCCAACTGTGATAACGG             <  1:203262/35‑1
                          ATTTCCCCCAGCCTGGCCGCCAACTGTGATAACGG             <  1:11372977/35‑1
                           TTTCCCCCAGCCTGGCCGCCAACTGTGATAACGGC            <  1:194887/35‑1
                            aTGCCCCAGCCTGGCCGCCAACTGTGATAACGGCA           <  1:1310456/34‑1
                            TTGCCCCAGCCTGGCCGCCAACTGTGATAACGGCA           <  1:6536941/35‑1
                             ttgCCCAGCCTGGCCGCCAACTGTGATAACGGCAT          <  1:15175033/32‑1
                             TGCCCCAGCCTGGCCGCCAACTGTGATAACGGCAT          <  1:2798884/35‑1
                               CCCCAGCCTGGCCGCCAACTGTGATAACGGCATGT        <  1:15279511/35‑1
                                CCCAGCCTGGCCGCCAACTGTGATAACGGCATGTT       <  1:894581/35‑1
                                CCCAGCCTGGCCGCCAACTGTGATAACGGCATGTT       <  1:11612674/35‑1
                                 CCAGCCTGGCCGCCAACTGTGATAACGGCATGTTT      <  1:13965963/35‑1
                                 CCAGCCTGGCCGCCAACTGTGATAACGGCATGTTT      <  1:15097603/35‑1
                                  CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG     >  1:13297404/1‑35
                                  CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG     >  1:13362535/1‑35
                                  CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG     >  1:19478588/1‑35
                                  CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG     >  1:16835668/1‑35
                                  CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG     >  1:19495353/1‑35
                                  CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG     >  1:378190/1‑35
                                  CAGCCTGGCCGCCAACTGTGATAACGGCATGTTTG     <  1:5958240/35‑1
                                   AGCCTGGCCGCCAACTGTGATAACGGCATGTTTGA    <  1:8507605/35‑1
                                   AGCCTGGCCGCCAACTGTGATAACGGCATGTTTGA    <  1:5172150/35‑1
                                   AGCCTGGCCGCCAACTGTGATAACGGCATGTTTGA    <  1:2756243/35‑1
                                   AGCCTGGCCGCCAACTGTGATAACGGCATGTTTGA    >  1:2206674/1‑35
                                   AGCCTGGCCGCCAACTGTGATAACGGCATGTTTGA    >  1:19010127/1‑35
                                   AGCCTGGCCGCCAACTGTGATAACGGCATGTTTGA    >  1:17369187/1‑35
                                    GCCTGGCCGCCAACTGTGATAACGGCATGTTTGAG   >  1:3367634/1‑35
                                    GCCTGGCCGCCAACTGTGATAACGGCATGTTTGAG   >  1:6894233/1‑35
                                    GCCTGGCCGCCAACTGTGATAACGGCATGTTTGAG   <  1:15678713/35‑1
                                    GCCTGGCCGCCAACTGTGATAACGGCATGTTTGAG   <  1:14457345/35‑1
                                     CCTGGCCGCCAACTGTGATAACGGCATGTTTGAGC  <  1:5147051/35‑1
                                     CCTGGCCGCCAACTGTGATAACGGCATGTTTGAGC  >  1:18295397/1‑35
                                                                        
AACCAAAACCACCACCTGGCAGGCCAATTTGCCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1076764‑1076727
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcCTGGCCGCCAACTGTGATAACGGCATGTTTGAGC  >  REL606/3786648‑3786681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.