New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 411751 = | 19 (0.180) | 8 (0.080) | 3/44 | NT | 12.3% | coding (313/591 nt) | thiJ | hypothetical protein |
? | REL606 | = 1138232 | 97 (1.030) | coding (395/648 nt) | grxB | glutaredoxin 2 (Grx2) |
AACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/411786‑411751 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT < REL606/1138232‑1138199 AACAGTTCCACCGTTCCGGTCGTATCGTCGCGGCT > 1:1440804/1‑35 AACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCT < 1:13615551/35‑1 AACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCT > 1:15459602/1‑35 AACAGTCCCACCGTTCCGGGCGTATCGTCGCGGCT < 1:4004039/35‑1 ACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTc > 1:11893493/1‑34 ACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTA > 1:5247114/1‑35 ACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTA > 1:16660168/1‑35 ACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTA < 1:18070390/35‑1 ACAGTGCCACCGTTCCGGGCGTATCGTCGCGGCTA < 1:4238296/35‑1 CAGTTCCACCGTTCCTGGCGTATCGTCGCGGCTAA > 1:17439896/1‑35 AGTTCCACCGTTCCGGGCGTATCGTCGCGGCTAAa > 1:10236124/1‑34 AGTTCCACCGTTCCGGGCGTATCGTCGCGGCTAAa > 1:875189/1‑34 AGTTCCACCGTTCCGGGCGTATCGTCGCGGCTAAT > 1:9558335/1‑35 AGTTCCACCGTTCCGGGCGTATCGTCGCGGCTAAT > 1:2958818/1‑35 AGTTCCACCGTTCCGGGCGTATCGTCGCGGCTAAT > 1:10396159/1‑35 GTTCCACCGTTCCGGGCGTATCGTCGCGGCTAAat > 1:13311324/1‑33 GTTCCACCGTTCCGGGCGTATCGTCGCGGCTAATT > 1:12676024/1‑35 GTTCCACCGTTCCGGGCGTATCGTCGCGGCTAATT > 1:3233185/1‑35 TTCCACCGTTCCGGGCGTATCGTCGCGGCTAATTT > 1:11059888/1‑35 TTCCACCGTTCCGGGCGTATCGTCGCGGCTAATTT > 1:5716611/1‑35 TCCACCGTTCCGGGCGTATCGTCGCGGCTAATTTT > 1:8080771/1‑35 CACCGTTCCGGGCGTATCGTCGCGGCTAATTTTGt > 1:17698701/1‑34 CACCGTTCCGGGCGTATCGTCGCGGCTAATTGTGC > 1:6535422/1‑35 ACCGTTCCGGGCGTATCGTCGCGGCTAATTTTGCC > 1:3610130/1‑35 ACCGTTCCGGGCGTATCGTCGCGGCTAATTTCGCC > 1:15156006/1‑35 ACCGTTCCGGGCGTATCGTCGCGGCTAAATTTGCC > 1:20469088/1‑35 CCGTTCCGGGCGTATCGTCGCGGCTAATTTTGCCG > 1:6307786/1‑35 CGTTCCGGGCGTATCGTCGCGGCTAATTTCGCCGc > 1:3806041/1‑34 GTTCCGGGCGTATCGTCGCGGCTAATTTTGCCccg > 1:1830325/1‑32 TAATTTTGCCGACCTGCTGGCCCACTCTGACGGTC > 1:9402505/1‑35 TAATTTTGCCGACCTGCTGGCCCACTCTGACGGTC < 1:6843817/35‑1 TAATTTTGCCGACCTGCTGGCCCACTCTGACGGTC > 1:16046240/1‑35 AATTTTGCGGACCTGCTGGCCCACTCTGACGGTCT < 1:16852742/35‑1 AATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT < 1:18798501/35‑1 AATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT > 1:19423722/1‑35 AATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT > 1:7436980/1‑35 AATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT < 1:20121274/35‑1 AATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT < 1:3495012/35‑1 AACAGTTCCACCGTTCCGGGCGTATCGTCGCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/411786‑411751 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taATTTTGCCGACCTGCTGGCCCACTCTGACGGTCT < REL606/1138232‑1138199 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |