New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1689078 =46 (0.450)9 (0.120) 4/34 NT 15.7% coding (362/636 nt) nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
?REL606 = 1996353 64 (0.880)coding (1494/1644 nt) yeeO predicted multidrug efflux system

Only 100 of 123 total aligned reads displayed.

GCGCTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGCCAACGTCGTATTAAACACTGCATTCGGCTGG  >  REL606/1689044‑1689112
                                  |                                  
ggcaaacattcccatccagacaccaaccacacccc                                    <  1:13477524‑M1/1‑1 (MQ=255)
ggcaaacattcccatccagacaccaaccacacccc                                    <  1:17682290‑M1/1‑1 (MQ=255)
ggcaaacattcccatccagacaccaaccacacccc                                    >  1:7131349‑M1/35‑35 (MQ=255)
ggcaaacattcccatccagacaccaacaacacccc                                    >  1:14999758‑M1/35‑35 (MQ=255)
gcgcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAAc                                    >  1:1923918/1‑35 (MQ=255)
gcgcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAAc                                    <  1:94742/35‑1 (MQ=255)
gcgcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAAc                                    <  1:17825712/35‑1 (MQ=255)
 gcaaacattcccatccagacaccaaccacacccCa                                   <  1:8007759‑M1/2‑1 (MQ=255)
 gcaaacattcccatccagacaccaaccacacccCa                                   >  1:3255841‑M1/34‑35 (MQ=255)
 cgcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACa                                   <  1:16211635/35‑1 (MQ=255)
 cgcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACa                                   >  1:5064061/1‑35 (MQ=255)
 cgcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACa                                   <  1:19264681/35‑1 (MQ=255)
  gcTTGAAGCCCTGCCCTGCGTAGGTCGTAAAACAg                                  >  1:2796325/1‑35 (MQ=255)
  gcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAg                                  <  1:15687268/35‑1 (MQ=255)
  gcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAg                                  >  1:11309426/1‑35 (MQ=255)
  gcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAg                                  >  1:16619536/1‑35 (MQ=255)
  gcTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAg                                  <  1:7094769/35‑1 (MQ=255)
  cgaacattcccatccagacaccaaccacacccCAg                                  >  1:7788969‑M1/33‑35 (MQ=255)
  caaacattcccatccagacaccaaccacacccCAg                                  <  1:869049‑M1/3‑1 (MQ=255)
  caaacattcccatccagacaccaaccacacccCAg                                  <  1:4352364‑M1/3‑1 (MQ=255)
  caaacattcccatccagacaccaaccacacccCAg                                  <  1:10893077‑M1/3‑1 (MQ=255)
  caaacattcccatccagacaccaaccacacccCAg                                  <  1:14052991‑M1/3‑1 (MQ=255)
  caaacattcccatccagacaccaaccacacccCAg                                  <  1:4542821‑M1/3‑1 (MQ=255)
  caaacattcccatccagacaccaaccacacccCAg                                  <  1:6321948‑M1/3‑1 (MQ=255)
   cTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGc                                 >  1:9964018/1‑35 (MQ=255)
   cTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGc                                 >  1:16434569/1‑35 (MQ=255)
   cTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGc                                 >  1:12820279/1‑35 (MQ=255)
   aaacattcccatccagacaccaaccacacccCAGc                                 <  1:8722101‑M1/4‑1 (MQ=255)
   aaacattcccatccagacaccaaccacacccCAGc                                 <  1:13219822‑M1/4‑1 (MQ=255)
   aaacattcccatccagacaccaaccacacacCAGc                                 >  1:6583087‑M1/32‑35 (MQ=255)
   aaacattaccatccagacaccaaccacacccCAGc                                 >  1:4085891‑M1/32‑35 (MQ=255)
     tGAAGCCCTGCCCTGCGTAGGTCGTAAAACAGCCa                               >  1:9584576/1‑35 (MQ=255)
     tGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGCCa                               >  1:8265258/1‑35 (MQ=255)
     tGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGCCa                               >  1:9208729/1‑35 (MQ=255)
     acattcccatccagacaccaaccacacccCAGCCa                               <  1:11768‑M1/6‑1 (MQ=255)
     acattcccatccagacaccaaccacacccCAGCCa                               <  1:11845146‑M1/6‑1 (MQ=255)
     acattcccatccagacaccaaccacacccCAGCCa                               <  1:829864‑M1/6‑1 (MQ=255)
      gAAGCCCTGCCCGGCGTAGGTCGTAAAACAGCCaa                              >  1:10354164/1‑35 (MQ=255)
      gAAGCCCTGCCCGGCGTAGGTCGTAAAACAGCCaa                              >  1:2655853/1‑35 (MQ=255)
      cattcccatccagacaccaaccacacccCAGCCaa                              <  1:8383997‑M1/7‑1 (MQ=255)
       aaGCCCTGCCCGGCGTAGGTCGTAAAACAGCCAAc                             >  1:11510622/1‑35 (MQ=255)
       aaGCCCTGCCCGGCGTAGGTCGTAAAACAGCCAAc                             >  1:11482314/1‑35 (MQ=255)
       aaGCCCTGCCCGGCGTAGGTCGTAAAACAGCCAAc                             >  1:10205103/1‑35 (MQ=255)
        aGCCCTGCCCGGCGTAGGTCGTACAACAGCCaaag                            >  1:10114419/1‑33 (MQ=38)
        aGCCCTGCCCGGCGTAGGTCGTAAAACAGCCAAcg                            >  1:10174366/1‑35 (MQ=255)
           ccTGCCCGGCGTAGGTCGTAAAACAGCCAAcgtcg                         >  1:18624672/1‑35 (MQ=255)
           ccTGCCCGGCGTAGGTCGTAAAACAGCCAAcgtcg                         >  1:20544511/1‑35 (MQ=255)
           ccTGCCCGGCGTAGGTCGTAAAACAGCCAAcgtcg                         >  1:17065248/1‑35 (MQ=255)
            cTGCCCGGCGTAGGTCGTAAAACAGCCAAcgtcgt                        >  1:16307132/1‑35 (MQ=255)
            cTGCCCGGCGTAGGTCGTAAAACAGCCAAcgtcgt                        >  1:1296880/1‑35 (MQ=255)
            cTGCCCGGCGTAGGTCGTAAAACAGCCAAcgtcgt                        >  1:8773753/1‑35 (MQ=255)
             tGCCCGGCGTAGGTCGTAAAACAGCCAACGTCGTa                       >  1:3658610/1‑35 (MQ=255)
             tGCCCGGCGTAGGTCGTAAAACAGCCAACGGCGTa                       >  1:440877/1‑35 (MQ=255)
              gCCCGGCGTAGGTCGTAAAACAGCCAACGCCGTAt                      >  1:15047849/1‑35 (MQ=255)
               cccGGCGTAGGTCGTAAAACAGCCAACGTCGTAtt                     >  1:18569368/1‑35 (MQ=255)
               cccGGCGTAGGTCGTAAAACAGCCAACGTCGTAtt                     >  1:10185928/1‑35 (MQ=255)
                ccGGCGTAGGTCGTAAAACAGCCAACGTCGTATTa                    >  1:11867738/1‑35 (MQ=255)
                ccGGCGTAGGTCGTAAAACAGCCAACGTCGTATTa                    >  1:4721818/1‑35 (MQ=255)
                ccGGCGTAGGTCGTAAAACAGCCAACGTCGCATTa                    >  1:7688527/1‑35 (MQ=255)
                ccGGCGTAGGTCGTAAAACAGCCAACGGCGTATTa                    >  1:13578585/1‑35 (MQ=255)
                 cGGCGTAGGTCGTAAAACAGCCAACGTCGTATTaa                   >  1:14590759/1‑35 (MQ=255)
                 cGGCGTAGGTCGTAAAACAGCCAACGTCGTATTaa                   >  1:11236132/1‑35 (MQ=255)
                 cGGCGTAGGTCGTAAAACAGCCAACGGCGTATTaa                   >  1:2207820/1‑35 (MQ=255)
                  ggCGTAGGTCGTAAAACAGCCAACGTCGTATTaaa                  >  1:2039732/1‑35 (MQ=255)
                     gTAGGTCGTAAAACAGCCAACGTCGTATTAAacac               >  1:4127039/1‑35 (MQ=255)
                     gTAGGTCGTAAAACAGCCAACGTCGTATTAAacac               >  1:3331435/1‑35 (MQ=255)
                     gTAGGTCGTAAAACAGCCAACGTCGTATTAAacac               >  1:20448227/1‑35 (MQ=255)
                     gTAGGTCGTAAAACAGCCAACGTCGTATTAAaaac               >  1:8757590/1‑35 (MQ=255)
                     gTAGGTCGTAAAACAGCCAACGTCGTATTAAaaac               >  1:18217937/1‑35 (MQ=255)
                      tAGGTCGTAAAACAGCCAACGTCGTATTAAACACt              >  1:3419339/1‑35 (MQ=255)
                         gTCGTAAAACAGCCAACGTCGTATTAAACACTGCa           >  1:1045965/1‑35 (MQ=255)
                         cccacacccCAGCCAACGTCGTATTAAACACTGCa           >  1:14410103‑M1/10‑35 (MQ=255)
                         accacccccCAGCCAACGTCGTATTAAACACTGCa           >  1:8744493‑M1/10‑35 (MQ=255)
                          ccacacccCAGCCAACGTCGTATTAAACACTGCAt          >  1:10131294‑M1/9‑35 (MQ=255)
                          acaaacccCAGCCAACGTCGTATTAAACACTGCAt          >  1:9950794‑M1/9‑35 (MQ=255)
                           cccacccCAGCCAACGTCGTATTAAACACTGCAtt         >  1:18851200‑M1/8‑35 (MQ=255)
                           cacacccCAGCCAACGTCGTATTAAACACTGCAtt         >  1:5513210‑M1/8‑35 (MQ=255)
                           caaacccCAGCCAACGTCGTATTAAACACTGCAtt         >  1:567148‑M1/8‑35 (MQ=255)
                           cGTAAAACAGCCAACGTCGTATTAAACACTGCAtt         >  1:16883578/1‑35 (MQ=255)
                            gTAAAACAGCCAACGTCGTATTAAACACTGCATTc        >  1:19827801/1‑35 (MQ=255)
                            gTAAAACAGCCAACGTCGTATTAAAAACTGCATTc        >  1:9944604/1‑35 (MQ=255)
                            acacccCAGCCAACGTCGTATTAAACACTGCATTc        >  1:19492857‑M1/7‑35 (MQ=255)
                             cccccCAGCCAACGTCGTATTAAACACTGCATTCg       >  1:11352624‑M1/6‑35 (MQ=255)
                              ccacCAGCCAACGTCGTATTAAACACTGCATTCgg      >  1:15263‑M1/5‑35 (MQ=255)
                              acccCAGCCAACGTCGTATTAAACACTGCATTCgg      >  1:7514103‑M1/5‑35 (MQ=255)
                              aaaaCAGCCAACGTCGTATTAAACACTGCATTCgg      >  1:3013798/1‑35 (MQ=255)
                              aaaaCAGCCAACGTCGTATTAAACACTGCATTCgg      >  1:14046811/1‑35 (MQ=255)
                              aaaaCAGCCAACGTCGTATTAAACACTGCATTCgg      >  1:14137580/1‑35 (MQ=255)
                               aaaCAGCCAACGTCGTATTAAACACTGCATTCGGc     >  1:4186189/1‑35 (MQ=255)
                               aaaCAGCCAACGTCGTATTAAACACTGCATTCGGc     >  1:3895129/1‑35 (MQ=255)
                               aaaCAGCCAACGTCGTATTAAACACTCCATTCGGc     >  1:10876982/1‑35 (MQ=255)
                                ccCAGCCAACGTCGTATTAAACACTGCATTCGGCt    >  1:5125971‑M1/3‑35 (MQ=255)
                                ccCAGCCAACGTCGTATTAAACACTGCATTCGGCt    >  1:2162256‑M1/3‑35 (MQ=255)
                                ccCAGCCAACGTCGTATTAAACACTGCATTCGGCt    >  1:9830077‑M1/3‑35 (MQ=255)
                                ccCAGCCAACGTCGTATTAAACACTGCATTCGGCt    >  1:5260723‑M1/3‑35 (MQ=255)
                                 cCAGCCAACGTCGTATTAAACACTGCATTCGGCTg   >  1:1855035‑M1/2‑35 (MQ=255)
                                 aCAGCAAACGTCGTATTAAACACTGCATTCGGCTg   <  1:9129630/35‑1 (MQ=255)
                                  CAGCCAACGTCGTATTAAACACTGCATTCGGCTgg  <  1:4082793‑M1/35‑1 (MQ=255)
                                  CAGCCAACGTCGTATTAAACACTGCATTCGGCTgg  >  1:3056948‑M1/1‑35 (MQ=255)
                                  CAGCCAACGTCGTATTAAACACTGCATTCGGCTgg  >  1:7713431‑M1/1‑35 (MQ=255)
                                  |                                  
GCGCTTGAAGCCCTGCCCGGCGTAGGTCGTAAAACAGCCAACGTCGTATTAAACACTGCATTCGGCTGG  >  REL606/1689044‑1689112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.