New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2750665 =112 (1.090)16 (0.250) 4/30 NT 22.7% coding (1468/2079 nt) fhlA DNA‑binding transcriptional activator
?REL606 3792209 = 39 (0.610)coding (315/414 nt) ECB_03532 hypothetical protein

Only 100 of 125 total aligned reads displayed.

ACGACACGCCGAACGAGCCGAACCGCTTCGGCTGGGTGGGGGAAATCGATCCATATGGTTATTTTTC  >  REL606/3792175‑3792241
                                  |                                
cttccattttgctggcacgagaaaacttcggctgg                                  >  1:918764‑M2/35‑35 (MQ=255)
cttccattttgctggcacgagaaaacttcggctgg                                  >  1:2336841‑M2/35‑35 (MQ=255)
cttccattttgctggcacgagaaaacttcggctgg                                  >  1:16785434‑M2/35‑35 (MQ=255)
cctgttcctgcaatacacgcagcaacttcggctgg                                  >  1:2850767‑M2/35‑35 (MQ=255)
cctgttcctgcaatacacgcagcaacttcggctgg                                  >  1:16245809‑M2/35‑35 (MQ=255)
acgacACGCCGAACGAGCCGAACCGCTTCGGCtgg                                  >  1:9939749/1‑35 (MQ=255)
acgacACGCCGAACGAGCCGAACCGCTTCGGCtgg                                  >  1:8534597/1‑35 (MQ=255)
acgacACGCCGAACGAGCCGAACCGCTTCGGCtgg                                  >  1:11614060/1‑35 (MQ=255)
 ttccattttgctggcacgagaaaacttcggctggg                                 >  1:2513761‑M2/34‑35 (MQ=255)
 ctgttcctgcaatacacgcagcaacttcgggtggg                                 >  1:824909‑M2/34‑35 (MQ=255)
 ctgttcctgcaatacacgcagcaacttcggctggg                                 >  1:6090207‑M2/34‑35 (MQ=255)
  tgttcctgcaatacacgcagcaacttcggctgggg                                >  1:18518801‑M2/33‑34 (MQ=255)
  tgttcctgcaatacacgcagcaacttcggctgggg                                >  1:13227504‑M2/33‑34 (MQ=255)
  tgttcctgcaatacacgcagcaacttcggctgggg                                >  1:10015394‑M2/33‑34 (MQ=255)
  tccattttgctggcacgagaaaacttcggctgggg                                >  1:9638748‑M2/33‑34 (MQ=255)
  tccattttgctggcacgagaaaacttcggctgggg                                >  1:786004‑M2/33‑34 (MQ=255)
  gacACGCCGAACGAGCCTAACCGCTTCGGCtgggg                                >  1:7252879/1‑34 (MQ=255)
   gttcctgcaatacacgcagcaacttcggctggggg                               >  1:19564377‑M2/32‑33 (MQ=255)
   gttcctgcaatacacgcagcaacttcggctggggg                               >  1:9537169‑M2/32‑33 (MQ=255)
   gttcctgcaatacacgcagcaacttcggctggggg                               >  1:20240763‑M2/32‑33 (MQ=255)
   gttcctgcaatacacgcagcaacttcggctggggg                               >  1:2466318‑M2/32‑33 (MQ=255)
   gttcctgcaatacacgcagcaacttcggctggggg                               >  1:16889909‑M2/32‑33 (MQ=255)
   gttcctgcaatacacgcagcaacttcggctggggg                               >  1:5513499‑M2/32‑33 (MQ=255)
   gttcctgcaatacacgcagcaacttcggctggggg                               >  1:4080564‑M2/32‑33 (MQ=255)
   gttcctgcaatacacgcagcaacttcggctgggac                               >  1:14853295‑M2/32‑33 (MQ=255)
   acccGCCAAAGGAGCCGAACCGCTTCGGCtgggtg                               <  1:960394/32‑1 (MQ=25)
   acacGCAGAGGGAGCCGAACCGCTTCGGCtgggtg                               <  1:5288907/35‑1 (MQ=25)
    ttcctgcaatacacgcagcaacttcggctgggggg                              >  1:16037633‑M2/31‑35 (MQ=255)
    ttcctgcaatacacgcagcaacttcggctgggggg                              >  1:2765371‑M2/31‑35 (MQ=255)
    ttcctgcaatacacgcagcaacttcggctgggggg                              >  1:11644745‑M2/31‑35 (MQ=255)
    ttcctgcaatacacgcagcaacttcggctgggggg                              >  1:10455857‑M2/31‑35 (MQ=255)
    cattttgctggcacgagaaaacttcggctgggggg                              >  1:3844906‑M2/31‑35 (MQ=255)
    cattttgctggcacgagaaaacttcggctggggcg                              >  1:1234235‑M2/31‑32 (MQ=255)
    cacGCCGAACGAGCCGAACCGCTTCGGCtgggtgg                              >  1:13032628/1‑35 (MQ=255)
     tcctgcaatacacgcagcaacttcggctggggggg                             >  1:10416438‑M2/30‑35 (MQ=255)
     attttgctggcacgagaaaacttcggctggggggg                             >  1:3322749‑M2/30‑35 (MQ=255)
     attttgctggcacgagaaaacttcggctggggggg                             >  1:5622200‑M2/30‑35 (MQ=255)
     attttgctggcacgagaaaacttcggctggggggg                             >  1:19010381‑M2/30‑35 (MQ=255)
     attttgctggcacgagaaaacttcggctggggggc                             >  1:1756571‑M2/30‑34 (MQ=255)
     attttgctggcacgagaaaacttcggctggggggc                             >  1:18153296‑M2/30‑34 (MQ=255)
      ttttgctggcacgagaaaacttcggctgggggggc                            >  1:835127‑M2/29‑34 (MQ=255)
      ttttgctggcacgagaaaacttcggctgGGGgggg                            >  1:9385579‑M2/29‑35 (MQ=255)
      cctgcaatacacgcagcaacttcggctgggggggc                            >  1:6666308‑M2/29‑34 (MQ=255)
      cctgcaatacacgcagcaacttcggctgGGGgggg                            >  1:7629614‑M2/29‑35 (MQ=255)
      cctgcaatacacgcagcaacttcggctgGGGgggg                            >  1:1977314‑M2/29‑35 (MQ=255)
       tttgctggcacgagaaaacttcggctgGGGggggg                           >  1:16490765‑M2/28‑35 (MQ=255)
       tttgctggcacgagaaaacttcggctgGGGggggg                           >  1:8243624‑M2/28‑35 (MQ=255)
       ctgcaatacacgcagcaacttcggctgGGgggggc                           >  1:20130144‑M2/28‑34 (MQ=255)
       ctgcaatacacgcagcaacttcggctgGGGggggg                           >  1:15418527‑M2/28‑35 (MQ=255)
       ctgcaatacacgcagcaacttcggctgGGGggggg                           >  1:7583785‑M2/28‑35 (MQ=255)
       ctgcaatacacgcagcaacttcggctgGGGggggg                           >  1:340565‑M2/28‑35 (MQ=255)
        ttgctggcacgagaaaacttcggctgGGggggggc                          >  1:3193025‑M2/27‑34 (MQ=255)
        tgcaatacacgcagcaacttcggctgGGggggggg                          >  1:6476069‑M2/27‑34 (MQ=255)
        tgcaatacacgcagcaacttcggctgGGggggggg                          >  1:11034453‑M2/27‑34 (MQ=255)
        tgcaatacacgcagcaacttcggctgGGggggggg                          >  1:14210332‑M2/27‑34 (MQ=255)
        tgcaatacacgcagcaacttcggctgGGGGGGGGa                          >  1:1190238‑M2/27‑35 (MQ=255)
        ccGAACGAGCCGAACCGCTTCGGCTGGGTgggggg                          >  1:2820041/1‑34 (MQ=255)
        ccGAACGAGCCGAACCGCTTCGGCTGGGGGGGGGa                          >  1:9155747/1‑35 (MQ=255)
         cGAACGAGCCGAACCGCTTCGGCTGGGGGGGGGaa                         >  1:18699225/1‑35 (MQ=255)
          gAACGAGCCGAACCGCTTCGGCTGGGTGGGGGaaa                        >  1:12298654/1‑35 (MQ=255)
          gAACGAGCCGAACCGCTTCGGCTGGGGGGGGGgaa                        >  1:8077121/1‑35 (MQ=37)
           aaggAGCCGACCCGCTTCGGCTGGGTGGGGGAAAt                       <  1:13064332/32‑1 (MQ=37)
           aaCGAGCCGAACCGCTTCGGCTGGGGGGGGGgaaa                       >  1:15908225/1‑34 (MQ=37)
            gggAGCCGAACCGCTTCGGCTGGGTGGGGGAAATc                      <  1:12923334/33‑1 (MQ=255)
             ggcgCCGACCCGCTTCGGCTGGGTGGGGGAAATCg                     <  1:3622572/32‑1 (MQ=37)
             ggAGCCGACCCGCTTCGGCTGGGTGGGGGAAATCg                     <  1:2447458/34‑1 (MQ=255)
             ggAGCCGAACCGCTTCGGCTGGGTGGGGGAAATCg                     <  1:1920529/34‑1 (MQ=255)
              gAGCCGACCCGCTTCGGCTGGGTGGGGGAAATCGa                    <  1:5675628/35‑1 (MQ=255)
              gAGCCGAACCGCTTCGGCTGGGTGGGGGGAATCGa                    >  1:4459277/1‑35 (MQ=255)
              gAGCCAACCCGCTTCGGCTGGGTGGGGGAAATCGa                    <  1:13010300/35‑1 (MQ=37)
               ggCCGACCCGCTTCGGCTGGGTGGGGGAAATCGAt                   <  1:13177454/34‑1 (MQ=255)
               cgCCGAACCGCTTCGGCTGGGTGGGGGAAATCGAt                   <  1:13566971/34‑1 (MQ=255)
               aGCCGAACCGCTTCGGCTGGGTGGGGGAAATCGAt                   <  1:4253547/35‑1 (MQ=255)
                gCCGACCCGCTTCGGCTGGGTGGGGGAAATCGATc                  <  1:15226902/35‑1 (MQ=255)
                gCCGACCCGCTTCGGCTGGGTGGGGGAAATCGATc                  <  1:4326598/35‑1 (MQ=255)
                gCCGACCCGCTTCGGCTGGGTGGGGGAAATCGATc                  <  1:9395103/35‑1 (MQ=255)
                gCCGAACCGCTTCGGCTGGGTGGGGGAAATCGATc                  <  1:11776566/35‑1 (MQ=255)
                gCCGAACCGCTTCGGCTGGGTGGGGGAAATCGATc                  <  1:7635466/35‑1 (MQ=255)
                gCCGAACCGCTTCGGCTGGGTGGGGGAAATCGATc                  <  1:7309175/35‑1 (MQ=255)
                gCCGAACCGCTTCGGCTGGGTGGGGGAAATCGATc                  <  1:6225987/35‑1 (MQ=255)
                cccGACCCGCTTCGGCTGGGTGGGGGAAATCGATc                  <  1:4511805/34‑1 (MQ=255)
                  cGACCCGCTTCGGCTGGGTGGGGGAAATCGATCCa                <  1:14565636/35‑1 (MQ=255)
                  cGAACCGCTTCGGCTGGGTGGGGGAAATCGATCCa                <  1:19226551/35‑1 (MQ=255)
                   gAACCGCTTCGGCTGGGTGGGGGAAATCGATCCat               <  1:7739794/35‑1 (MQ=255)
                   gAACCGCTTCGGCTGGGTGGGGGAAATCGATCCat               <  1:11484526/35‑1 (MQ=255)
                    ccccGCGTCGGCTGGGTGGGGGAAATCGATCCata              <  1:7497031/33‑1 (MQ=37)
                    acccGCTTCGGCTGGGTGGGGGAAATCGATCAata              <  1:19852086/33‑1 (MQ=37)
                     aCCGCTTCGGCTGGGTGGGGGAAATCGATCCatat             <  1:6638331/35‑1 (MQ=255)
                     aCCGCTTCGGCTGGGTGGGGGAAATCGATCCatat             <  1:791244/35‑1 (MQ=255)
                     aCCGCTTCGGCTGGGTGGGGGAAATCGATCCatat             >  1:4075402/1‑35 (MQ=255)
                     aCCGCTTCGGCTGGGTGGGGGAAATCGATCCatat             <  1:10312132/35‑1 (MQ=255)
                     aCCGCTTCGGCTGGGGGGGGGAAATCGATCCatat             >  1:14054381/1‑35 (MQ=255)
                      ccGCTTCGGCTGGGTGGGGGAAATCGATCCATATg            <  1:13865754/35‑1 (MQ=255)
                       cGCTTCGGCTGGGTGGGGGAAATCGATCCATATgg           <  1:4447347/35‑1 (MQ=255)
                       cGCTTCGGCTGGGTGGGGGAAATCGATCCATATgg           <  1:4640023/35‑1 (MQ=255)
                        gCTTCGGCTGGGTGGGGGAAATCGATCCATATGGt          <  1:15463170/35‑1 (MQ=255)
                        gCTTCGGCTGGGTGGGGGAAATCGATCCATATGGt          <  1:4870360/35‑1 (MQ=255)
                         cttcggctgGGTGGGGGAAATCGATCCATATGGtt         <  1:13310591‑M2/26‑1 (MQ=255)
                          ttcggctgGGTGGGGGAAATCGATCCATATGGTTa        <  1:18615751‑M2/27‑1 (MQ=255)
                                caggtggtGGAAATCGATCCATATGGTTATTTTTc  >  1:19305838/3‑35 (MQ=38)
                                  |                                
ACGACACGCCGAACGAGCCGAACCGCTTCGGCTGGGTGGGGGAAATCGATCCATATGGTTATTTTTC  >  REL606/3792175‑3792241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.