New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 9903115 (1.120)22 (0.220) 8/46 NT 23.0% intergenic (+12/+23) mogA/yaaH molybdenum cofactor biosynthesis protein/conserved inner membrane protein associated with acetate transport
?REL606 = 1095351 37 (0.380)intergenic (‑185/‑238) putA/putP fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase/proline:sodium symporter

Only 100 of 118 total aligned reads displayed.

ATTAAAAAAATAACTCAGACTTTTTCTCTGCGGCAGTTAACATTTTTGAAAGGTGCAACCGCAAAAAAT  >  REL606/1095317‑1095385
                                  |                                  
aTTAAAAAAATAACTCAGACTTTTTCTCTGCGGCa                                    >  1:17797267/1‑35 (MQ=255)
aTTAAAAAAATAACTCAGACTTTTTCTCTGCGGCa                                    >  1:17966014/1‑35 (MQ=255)
aTTAAAAAAATAACTCAGACTTTTTCTCTGCGGCa                                    <  1:17986462/35‑1 (MQ=255)
aTTAAAAAAATAACTCAGACTTTTTCTCTGCGGCa                                    >  1:8114690/1‑35 (MQ=255)
aTTAAAAAAATAACTCAGACTTTTTCTCTGCGGCa                                    <  1:3987875/35‑1 (MQ=255)
aTTAAAAAAATAACTCAGACTTTTTCTCTGCGGCa                                    <  1:5409888/35‑1 (MQ=255)
aTTAAAAAAATAACTCAGACTTTTTCTCTGCGGCa                                    <  1:5409869/35‑1 (MQ=255)
 ttAAAAAAATAACTCAGACTTTTTCTCTTCGGCAg                                   <  1:4935071‑M2/35‑2 (MQ=255)
 ttAAAAAAATAACTCAGACTTTTTCTCTGCGGCAg                                   >  1:9399431‑M2/1‑34 (MQ=255)
 ttAAAAAAATAACTCAGACTTTTTCTCTGCGGCAg                                   <  1:16242753‑M2/35‑2 (MQ=255)
 ttAAAAAAATAACTCAGACTTTTTCTCTGCGGCAg                                   >  1:11784478‑M2/1‑34 (MQ=255)
 ttAAAAAAATAACTCAGACTTTTTCTCTGCGGCAg                                   <  1:6708188‑M2/35‑2 (MQ=255)
  tAAAAAAATAACTCAGACTTTTTCTCTGCGGCAgg                                  <  1:17221644‑M2/35‑3 (MQ=255)
  tAAAAAAATAACTCAGACTTTTTCTCTGCGGCAgg                                  <  1:16782255‑M2/35‑3 (MQ=255)
  tAAAAAAATAACTCAGACTTTTTCTCTGCGGCAgg                                  <  1:879792‑M2/35‑3 (MQ=255)
  tAAAAAAATAACTCAGACTTTTTCTCTGCGGCAGt                                  <  1:16007513/35‑1 (MQ=255)
  tAAAAAAATAACTCAGACTTTTTCTCTGCGGCAGt                                  <  1:10049593/35‑1 (MQ=255)
   aaaaaaaTAACTCAGACTTTTTCTCTGCGTCAGtt                                 >  1:3436903/1‑35 (MQ=255)
   aaaaaaaTAACTCAGACTTTTTCTCTGCGGCAggg                                 <  1:17432365‑M2/35‑4 (MQ=255)
   aaaaaaaTAACTCAGACTTTTTCTCTGCGGCAggg                                 <  1:15307348‑M2/35‑4 (MQ=255)
   aaaaaaaTAACTCAGACTTTTTCTCTGCGGCAGtt                                 <  1:340720/35‑1 (MQ=255)
   aaaaaaaTAACTCAGACTTTTTCTCTGCGGCAGtt                                 <  1:1113443/35‑1 (MQ=255)
    aaaaaaTAACTCAGACTTTTTCTCTGCGGCAgggg                                <  1:14530699‑M2/35‑5 (MQ=255)
    aaaaaaTAACTCAGACTTTTTCTCTGCGGCAgggg                                <  1:19761401‑M2/35‑5 (MQ=255)
    aaaaaaTAACTCAGACTTTTTCTCTGCGGCAgggg                                <  1:9307513‑M2/35‑5 (MQ=255)
    aaaaaaTAACTCAGACTTTTTCTCTGCGGCAGTTa                                <  1:9305083/35‑1 (MQ=255)
     aaaaaTAACTCATACTTTTTCTCTGCGGCAggggg                               <  1:18171623‑M2/35‑6 (MQ=255)
     aaaaaTAACTCAGACTTTTTCTCTGCGGCAggggg                               <  1:1926217‑M2/35‑6 (MQ=255)
     aaaaaTAACTCAGACTTTTTCTCTGCGGCAggggg                               <  1:8023717‑M2/35‑6 (MQ=255)
     aaaaaTAACTCAGACTTTTTCTCTGCGGCAGTTaa                               <  1:8564422/35‑1 (MQ=255)
     aaaaaTAACTCAGACTTTTTCTCTGCGGCAGTTaa                               <  1:17458988/35‑1 (MQ=255)
     aaaaaTAACTCAGACTTTTTCTCTGCGGCAGTTaa                               <  1:10328281/35‑1 (MQ=255)
     aaaaaTAACTCAGACTTTTTCTCTGCGGCAGTTaa                               <  1:2204012/35‑1 (MQ=255)
      aaaaTAACTCAGACTTTTTCTCTGCGGCAgggggg                              <  1:9429627‑M2/35‑7 (MQ=255)
      aaaaTAACTCAGACTTTTTCTCTGCGGCAggggga                              <  1:8427068‑M2/35‑7 (MQ=255)
      aaaaTAACTCAGACTTTTTCTCTGCGGCAGTTAAc                              <  1:8956071/35‑1 (MQ=255)
      aaaaTAACTCAGACTTTTTCTCTGCGGCAGTTAAc                              <  1:690594/35‑1 (MQ=255)
       aaaTAACTCAGACTTTTTCTCTGCGGCAgggggga                             <  1:18412769‑M2/35‑8 (MQ=255)
       aaaTAACTCAGACTTTTTCTCTGCGGCAggggaga                             <  1:19161684‑M2/35‑8 (MQ=255)
       aaaTAACTCAGACTTTTTCTCTGCGGCAGTTAACa                             <  1:10968405/35‑1 (MQ=255)
       aaaTAACTCAGACTTTTTCTCTGCGGCAGTTAACa                             <  1:3019581/35‑1 (MQ=255)
        aaTAACTCAGACTTTTTCTCTGCGGCAggggggat                            <  1:15154420‑M2/35‑9 (MQ=255)
        aaTAACTCAGACTTTTTCTCTGCGGCAgggggagt                            <  1:20125180‑M2/35‑9 (MQ=255)
        aaTAACTCAGACTTTTTCTCTGCGGCAGTTAACAt                            <  1:5868396/35‑1 (MQ=255)
         aTAACTCAGACTTTTTCTCTGCGGCAgggggggtt                           <  1:13107111‑M2/35‑10 (MQ=255)
         aTAACTCAGACTTTTTCTCTGCGGCAgggggggat                           <  1:11628459‑M2/35‑10 (MQ=255)
         aTAACTCAGACTTTTTCTCTGCGGCAggggggaat                           <  1:3973074‑M2/35‑10 (MQ=255)
         aTAACTCAGACTTTTTCTCTGCGGCAGTTAACAtt                           <  1:9197506/35‑1 (MQ=255)
         aTAACTCAGACTTTTTCTCTGCGGCAGTTAACAtt                           <  1:2925867/35‑1 (MQ=255)
         aTAACTCAGACTTTTTCTCTGCGGCAGTTAACAtt                           <  1:17190723/35‑1 (MQ=255)
           aaCTCAGACTTTTTCTCTGCGGCAggggggctttt                         <  1:7447617‑M2/35‑12 (MQ=255)
           aaCTCAGACTTTTTCTCTGCGGCAggggggatttt                         <  1:11470188‑M2/35‑12 (MQ=255)
           aaCTCAGACTTTTTCTCTGCGGCAggggggatttt                         <  1:16605153‑M2/35‑12 (MQ=255)
           aaCTCAGACTTTTTCTCTGCGGCAggggggatttt                         <  1:5287529‑M2/35‑12 (MQ=255)
           aaCTCAGACTTTTTCTCTGCGGCAggggggaattt                         <  1:14431954‑M2/35‑12 (MQ=255)
           aaCTCAGACTTTTTCTCTGCGGCAGTTAACAtttt                         <  1:15832075/35‑1 (MQ=255)
           aaCTCAGACTTTTTCTCTGCGGCAGTTAACAtttt                         <  1:5422766/35‑1 (MQ=255)
           aaCTCAGACTTTTTCTCTGCGGCAGTTAACAtttt                         <  1:18925705/35‑1 (MQ=255)
            aCTCAGACTTTTTCTCTGCGGCAgggggggttttt                        <  1:11651501‑M2/35‑13 (MQ=255)
            aCTCAGACTTTTTCTCTGCGGCAggggggattttt                        <  1:14652739‑M2/35‑13 (MQ=255)
            aCTCAGACTTTTTCTCTGCGGCAggggggattttt                        <  1:4792748‑M2/35‑13 (MQ=255)
            aCTCAGACTTTTTCTCTGCGGCAGTTAACAttttt                        <  1:17174094/35‑1 (MQ=255)
            aCTCAGACTTTTTCTCTGCGGCAGTTAACAttttt                        <  1:4363677/35‑1 (MQ=255)
            aCTCAGACTTTTTCTCTGCGGCAGTTAACAttttt                        <  1:19306839/35‑1 (MQ=255)
            aCTCAGACTTTTTCTCAGCGGCAggggggattttt                        <  1:20266695‑M2/35‑13 (MQ=255)
             cTCAGACTTTTTCTCTGCGGCAgggggggtttttt                       <  1:9127101‑M2/35‑14 (MQ=255)
             cTCAGACTTTTTCTCTGCGGCAggggggatttttt                       <  1:2641651‑M2/35‑14 (MQ=255)
             cTCAGACTTTTTCTCTGCGGCAGTTAACATTTTTg                       <  1:16542880/35‑1 (MQ=255)
              tCAGACTTTTTCTCTGCGGCAggggggagtttttt                      <  1:12570803‑M2/35‑15 (MQ=255)
                aGACTTTTTCTCTGCGGCAgggggggtttttttaa                    <  1:9302933‑M2/35‑17 (MQ=255)
                  aCTTTTTCTCTGCGGCAGTTAACATTTTTGAAAgg                  <  1:18643383/35‑1 (MQ=255)
                   gggtttCTCTGCGGCAGTTAACATTTTTGAAAGGt                 <  1:6491544/32‑1 (MQ=255)
                    tttttCTCTGCGGCAGTTAACATTTTTGAAAGGTg                <  1:589266/35‑1 (MQ=255)
                     ttttCTCTGCTGCAGTTAACATTTTTGAAAGGTGc               >  1:16384187/1‑35 (MQ=255)
                     ttttCTCTGCGGCAGTTAACATTTTTGAAAGGTGc               <  1:17249253/35‑1 (MQ=255)
                     ttttCTCTGCGGCAGTTAACATTTTTGAAAGGTGc               <  1:2655550/35‑1 (MQ=255)
                      tttCTCTGCGGCAGTTAACATTTTTGAAAGGTGCa              <  1:8897751/35‑1 (MQ=255)
                      tttCTCTGCGGCAGTTAACATTTTTGAAAGGTGCa              <  1:2226958/35‑1 (MQ=255)
                      tttCTCTGCGGCAGTTAACATTTTTGAAAGGTGCa              <  1:5503292/35‑1 (MQ=255)
                         ctctGCGGCAGTTAACATTTTTGAAAGGTGCAAcc           <  1:11879905/35‑1 (MQ=255)
                         ctctGCGGCAGTTAACATTTTTGAAAGGTGCAAcc           <  1:2397639/35‑1 (MQ=255)
                          tctGCGGCAGTTAACATTTTTGAAAGGTGCAACCg          <  1:11814213/35‑1 (MQ=255)
                             gCGGCAGTTAACATTTTTGAAAGGTGCAACCGCaa       <  1:14523529/35‑1 (MQ=255)
                             gCGGCAGTTAACATTTTTGAAAGGTGCAACCGCaa       <  1:3469873/35‑1 (MQ=255)
                             gCGGCAGTTAACATTTTTGAAAGGTGCAACCGCaa       <  1:11778575/35‑1 (MQ=255)
                             gCGGCAGTTAACATTTTTGAAAGGTGCAACCGCaa       <  1:4913705/35‑1 (MQ=255)
                             gCGGCAGTTAACATTTTTGAAAGGTGCAACCGCaa       <  1:16099220/35‑1 (MQ=255)
                               ggCAGTTAACATTTTTGAAAGGTGCAACCGCaaaa     <  1:8164507/35‑1 (MQ=255)
                               ggCAGTTAACATTTTTGAAAGGTGCAACCGCaaaa     <  1:2105530/35‑1 (MQ=255)
                               ggCAGTTAACATTTTTGAAAGGTGCAACCGAaaaa     <  1:18813077/35‑1 (MQ=255)
                                gCAGTTAACATTTTTGAAAGGTGCAACCGCaaaaa    >  1:16156817/1‑35 (MQ=255)
                                gCAGTTAACATTTTTGAAAGGTGCAACCGCaaaaa    >  1:13211107/1‑35 (MQ=255)
                                gCAGTTAACATTTTTGAAAGGTGCAACCGCaaaaa    <  1:20342798/35‑1 (MQ=255)
                                gCAGTTAACATTTTTGAAAGGTGCAACCGCaaaaa    >  1:11082056/1‑35 (MQ=255)
                                 cAGTTAACATTTTTGAAAGGTGCAACCGCaaaaaa   >  1:13960221/1‑35 (MQ=255)
                                 cAGTTAACATTTTTGAAAGGTGCAACCGCaaaaaa   >  1:5362892/1‑35 (MQ=255)
                                  aGTTAACATTTTTGAAAGGTGCAACCGCAAAAAAt  >  1:12570118/1‑35 (MQ=255)
                                  aGTTAACATTTTTGAAAGGTGCAACCGCAAAAAAt  >  1:5801636/1‑35 (MQ=255)
                                  aGTTAACATTTTTGAAAGGTGCAACCGCAAAAAAt  >  1:2553148/1‑35 (MQ=255)
                                  aGTTAACATTTTTGAAAGGTGCAACCGCAAAAAAt  <  1:5377998/35‑1 (MQ=255)
                                  |                                  
ATTAAAAAAATAACTCAGACTTTTTCTCTGCGGCAGTTAACATTTTTGAAAGGTGCAACCGCAAAAAAT  >  REL606/1095317‑1095385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.