Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,335,105 | C→A | 9.5% | A9A (GCG→GCT) | yjdL ← | predicted transporter |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,335,105 | 0 | C→A | 9.5% | 8.2 ‑1.6 ‑0.0 | 72 | A9A (GCG→GCT) | yjdL | predicted transporter |
Reads supporting (aligned to +/- strand): new base (4/3): ref base (20/45): total (24/48) | ||||||||||
Fisher's exact test strand distribution p-value = 2.12e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.28e-01 |
Only 100 of 101 total aligned reads displayed.
ACTCCCAGATTTGGATCGCCACGATATAGTATATCGCGCGCGGCTGTGAGGGTGTTTTCATGTGTTCTC > REL606/4335071‑4335139 | aCTCCCAGATTTGGATCGCCACGATATAGTATATc > 1:13087189/1‑35 (MQ=255) cccccATATTTGGATCGCCACGATATAGTATATcg < 1:17168847/33‑1 (MQ=38) cTCCCAGATTTGGATCTCCACGATATAGTATATcg < 1:3035103/35‑1 (MQ=255) cTCCCAGATTTGGATCGCCACGATATAGTATATcg > 1:2894663/1‑35 (MQ=255) cTCCCAGATTTGGATCGCCACGATATAGTATATcg > 1:13540305/1‑35 (MQ=255) tCCCAGATTTGGATCGCCACGATATAGTATATcgc > 1:15191871/1‑35 (MQ=255) tCCCAGATTTGGATCGCCACGATATAGTATATcgc > 1:18515183/1‑35 (MQ=255) tCCCAGATTTGGATCGCCACGATATAGTATATcgc > 1:15159527/1‑35 (MQ=255) ccccAGTTTTGGTTCGCCACGATATAGTATATcgc < 1:6270379/34‑1 (MQ=25) ccccAGTTTTGGTTCGCCACGATATAGTATATcgc < 1:2954432/34‑1 (MQ=25) ccccAGATTGGGTTCGCCACGATATAGTATATcgc < 1:5972860/34‑1 (MQ=37) cccAGTTTTGGTTCGCCACGATATAGTATATcgcg < 1:7417039/35‑1 (MQ=37) cccAGATTTGGATCGCCACGATATAGTATATcgcg > 1:7636886/1‑35 (MQ=255) cccAGATTTGGATCGCCACGATATAGTATATcgcg > 1:8114024/1‑35 (MQ=255) ccAGATTTGGATCGCCACGATATAGTATATcgcgc > 1:19619080/1‑35 (MQ=255) cAGATTTGGATCGCCACGATATAGTATATcgcgcg > 1:10125740/1‑35 (MQ=255) cAGATTTGGATCGCCACGATATAGTATATcgcgcg > 1:18486745/1‑35 (MQ=255) cAGATTTGGATCGCCACGATATAGTATATcgcgcg > 1:13941693/1‑35 (MQ=255) ggttttGCATCGCCACGATATAGTATATcgcgcgc < 1:8639225/32‑1 (MQ=37) aGATTTGTTTCGCCACGATATAGTATATcgcgcgc < 1:743275/35‑1 (MQ=38) aGATTTGGATCGCCACGATATAGTATATcgcgcgc < 1:1512599/35‑1 (MQ=255) aGATTTGGATCGCCACGATATAGTATATcgcgcgc > 1:4409927/1‑35 (MQ=255) aGATTTGGATCGCCACGATATAGTATATcgcgcgc > 1:330005/1‑35 (MQ=255) aGATTGGGTTCGCCACGATATAGTATATcgcgcgc < 1:1164781/35‑1 (MQ=38) aGATGTGGTTCGCCACGATATAGTATATcgcgcgc < 1:13665912/35‑1 (MQ=38) ttttGGTTCGCCACGATATAGTATATCGCGCGCgg < 1:2081462/34‑1 (MQ=255) ttttGAATCGCCACGATATAGTATATCGCGCGCgg < 1:16632103/34‑1 (MQ=255) aTTTGGATCGCCACTATATAGTATATCGCGCGCgg > 1:2807872/1‑35 (MQ=255) aTTTGGATCGCCACGATATAGTATATcgcgcgctg > 1:12628123/1‑33 (MQ=255) tttGGATCGCCACGATATAGTATATCGCGCGCGGc > 1:8272315/1‑35 (MQ=255) tGGATCGCCACGATATAGTATATCGCGGGCGGGtg > 1:4218961/1‑35 (MQ=38) gtttCGCCACGATATAGTATATCGCGCGCGGCtgt < 1:13255371/32‑1 (MQ=255) ggttCGCCACGATATAGTATATAGCGCGCGGCtgt < 1:18479056/32‑1 (MQ=18) ggttCGCCACGATATAGTATATAGCGCGCGGCtgt < 1:8988435/32‑1 (MQ=18) ggATCGCCACGATATAGTATATCGCGCGCGGCtgg > 1:15143298/1‑34 (MQ=255) ggtCGCCACGATATAGTATATCGCGCGCGGCtgtg < 1:6003297/33‑1 (MQ=255) gATCGCCACTATATAGTATATCGCGCGCGGCtggg > 1:2454551/1‑33 (MQ=37) gATCGCCACGATATAGTATATCGCGCGCGGCtggg > 1:12839058/1‑33 (MQ=255) gATCGCCACGATATAGTATATCGCGCGCGGCtggg > 1:15480109/1‑33 (MQ=255) gATCGCCACGATATAGTATACCGCGCGCGGCtggg > 1:12882389/1‑33 (MQ=37) aTCGCCACGATATAGTATATCGCGCGCGGCtgggg > 1:10103130/1‑32 (MQ=255) tCGCCACGATATAGTATATCGCGCGCGGCTGTGAg < 1:20483496/35‑1 (MQ=255) tCGCCACGATATAGTATATCGCGCGCGGCTGTGAg < 1:14844983/35‑1 (MQ=255) tCGCCACGATATAGTATATCGCGCGCGGCTGTGAg < 1:8516578/35‑1 (MQ=255) gcaaCGACATAGTAAATAGCGCGCGGCTGGGGggg > 1:14033400/4‑35 (MQ=25) gCCACGATATAGTATATCGCGCGCGGCTGGGGggg > 1:16490361/1‑35 (MQ=25) gCCACGATATAGTATATCGCGCGCGGCTGGGGggg > 1:13151774/1‑35 (MQ=25) ccACGATATAGTATATCGCGCGCGGCTGTGAGGgt < 1:20581199/35‑1 (MQ=255) ccACGATATAGTATATCGCGCGCGGCTGTGAGGgt < 1:20184121/35‑1 (MQ=255) ccACGATATAGTATATCGCGCGCGGCTGTGAGGgt < 1:19073845/35‑1 (MQ=255) ccACGATATAGTATATCGCGCGCGGCTGTGAGGgt < 1:10084842/35‑1 (MQ=255) ccACGATATAGTATATCGCGCGCGGCTGTGAGGgt < 1:1607535/35‑1 (MQ=255) ccACGATATAGTATATCGCGCGCGGCTGTGAGGgt < 1:12141949/35‑1 (MQ=255) ccACGATATAGTATATCGCGCGCGGCTGTGAGGgt < 1:14070094/35‑1 (MQ=255) ccACGATATAGTATATCGCGCGCGGCTGGGGgggg > 1:20528246/1‑34 (MQ=25) caaCGACATAGTAAATAGCGCGCGGCTGGGGgggg > 1:5983508/3‑34 (MQ=25) cACGATATAGTATATCGCGCGCGGCTGTGAGGgtg < 1:15739141/35‑1 (MQ=255) cACGATATAGTATATCGCGCGCGGCTGGGGggggg > 1:15442780/1‑33 (MQ=21) cACGATATAGTATATCGCGCGCGGCTGGGGggggg > 1:363440/1‑33 (MQ=21) cACGATATAGTATATCGCGCGCGGCTGGGGggggg > 1:18360838/1‑33 (MQ=21) cACGATATAGTATATCGCGCGCGGCTGGGGggggg > 1:13844262/1‑33 (MQ=21) aaCGACATAGTAAATAGCGCGCGGCTGGGGggggg > 1:9353494/2‑33 (MQ=21) aCGATATAGTATATCGCGCTCGGCTGGGGgggggg > 1:8075026/1‑32 (MQ=19) aCGATATAGTATATCGCGCGCTGCTGTGAcggggg > 1:8417031/1‑32 (MQ=25) aCGATATAGTATATCGCGCGCGGCTGTGAGGgtgt < 1:16725933/35‑1 (MQ=255) aCGATATAGTATATCGCGCGCGGCTGTGAGGgtgt < 1:14891298/35‑1 (MQ=255) aCGATATAGTATATCGCGCGCGGCTGTGAGGgtgt < 1:11995007/35‑1 (MQ=255) aCGACATAGTAAATAGCGCGCGGCTGGGGgggggg > 1:573930/1‑32 (MQ=21) ctatatAGTATATCGCGCGCGGCTGTGAGGGTGtt < 1:18397024/33‑1 (MQ=255) cGATATAGTATATCGCGCGCGGCTGTGAGGGTGtt < 1:1406013/35‑1 (MQ=255) cGATATAGTATATAGCGCGCGGCTGTGAGGGTGtt < 1:7611194/35‑1 (MQ=255) gATATAGTATATCGCGCGCGGCTGTGAGGGTGttt < 1:7392552/35‑1 (MQ=255) atatAGTATATCGCGCGCGGCTGTGAGGGTGtttt < 1:18426393/35‑1 (MQ=255) tataGTATATCGCGCGCGGCTGTGAGGGTGTTTTc < 1:519341/35‑1 (MQ=255) tataGTATATCGCGCGCGGCTGTGAGGGTGTTTTc < 1:8275320/35‑1 (MQ=255) tataGTATATCGCGCGCGGCTGGGGGGGGGgtttt > 1:17833259/1‑34 (MQ=16) ataGTATATCGCGCGCGGCTGTGAGGGTGTTTTCa < 1:2766655/35‑1 (MQ=255) ataGTATATCGCGCGCGGCTGTGAGGGTGTTTTCa < 1:16126552/35‑1 (MQ=255) taGTATATCGCGTGCGGCTGTGAGGGTGTTTTCAt < 1:20148786/35‑1 (MQ=255) taGTATATCGCGCGCGGCTGTGAGGGTGTTTTCAt < 1:5027022/35‑1 (MQ=255) taGTATATCGCGCGCGGCTGTGAGGGTGTTTTCAt < 1:4265348/35‑1 (MQ=255) taGTATATCGCGCGCGGCTGTGAGGGTGTTTTCAt < 1:17936594/35‑1 (MQ=255) taGTATATCGCGCGCGGCTGTGAGGGTGTTTTCAt < 1:7553111/35‑1 (MQ=255) aGTATATCGCGCGCGGCTGTGAGGGTGTTTTCAtg < 1:13726626/35‑1 (MQ=255) gTATATCGCGCGCGGCTGTGAGGGTGTTTTCAtgt < 1:8325799/35‑1 (MQ=255) gTATATCGCGCGCGGCTGTGAGGGTGTTTTCAtgt < 1:7242424/35‑1 (MQ=255) gTATATCGCGCGCGGCTGTGAGGGTGTTTTCAtgt < 1:16262335/35‑1 (MQ=255) gTATATCGCGCGCGGCTGTGAGGGTGTTTTCAtgt < 1:15556587/35‑1 (MQ=255) gTATATCGCGCGCGGCTGTGAGGGTGTTTTCAtgt < 1:3076675/35‑1 (MQ=255) tataTCGCGCGCGGCTGTGAGGGTGTTTTCAtgtg < 1:1832694/35‑1 (MQ=255) tataTCGCGCGCGGCTGGGGGGGGGGTTTTTtgtg > 1:10142363/1‑35 (MQ=9) atatCGCGCGCGGCTGTGAGGGTGTTTTCATgtgt < 1:7529917/35‑1 (MQ=255) atatCGCGCGCGGCTGTGAGGGTGTTTTCATgtgt < 1:765620/35‑1 (MQ=255) atatCGCGCGCGGCTGTGAGGGTGTTTTCATgtgt < 1:16279799/35‑1 (MQ=255) tatCGCGCGCGGCTGTGAGGGTGTTTTCATGTGtt < 1:8383024/35‑1 (MQ=255) atCGCGCGCGGCTGTGAGGGTGTTTTCATGTGTtc < 1:11873928/35‑1 (MQ=255) tCGCGCGCGGCTGTGAGGGTGTTTTCATGTGTtct < 1:13620606/35‑1 (MQ=255) tCGCGCGCGGCTGTGAGGGTGTTTTCATGTGTtct < 1:19003125/35‑1 (MQ=255) tCGCGCGCGGCTGTGAGGGTGTTTTCATGTGTtct < 1:10487556/35‑1 (MQ=255) cgcgcgcgGCTGTGAGGGTGTTTTCATGTGTtctc < 1:11708368/35‑1 (MQ=255) | ACTCCCAGATTTGGATCGCCACGATATAGTATATCGCGCGCGGCTGTGAGGGTGTTTTCATGTGTTCTC > REL606/4335071‑4335139 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |