New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1036060 =100 (0.970)19 (0.190) 7/46 NT 20.0% intergenic (+32/+44) ycbG/ompA hypothetical protein/outer membrane protein A (3a;II*;G;d)
?REL606 3483139 = 59 (0.570)coding (1455/2706 nt) malT transcriptional regulator MalT

Only 100 of 204 total aligned reads displayed.

TAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCA  >  REL606/1036026‑1036094
                                  |                                  
tAACTGACGAAAGTCAGTTCAATTTACTAAAGGCa                                    <  1:20471441/35‑1 (MQ=255)
tAACTGACGAAAGTCAGTTCAATTTACTAAAGGCa                                    <  1:8500605/35‑1 (MQ=255)
tAACTGACGAAAGTCAGTTCAATTTACTAAAGGCa                                    >  1:8759400/1‑35 (MQ=255)
tAACTGAAGAAAGTCAGTTCAATTTACTAAAGGCa                                    <  1:13734446/35‑1 (MQ=255)
 cacccagcaccgaggttgccacaatgcggctaaaa                                   <  1:19654103‑M1/2‑1 (MQ=255)
 cacccagcaccgaggttgccacaatgcggctaaaa                                   <  1:17089994‑M1/2‑1 (MQ=255)
 aaCTGACGAAAGTCAGTTCAATTTACTAAAGGCaa                                   <  1:20611562/35‑1 (MQ=255)
 aaCTGACGAAAGTCAGTTCAATTTACTAAAGGCaa                                   <  1:20184889/35‑1 (MQ=255)
 aaCTGACGAAAGTCAGTTCAATTTACTAAAGGCaa                                   <  1:1905324/35‑1 (MQ=255)
  acccagcaccgaggttgccacaatgcggctaaaaa                                  <  1:17952083‑M1/3‑1 (MQ=255)
  aCTGACGAAAGTCAGTTCAATTTACTAAAGGCaaa                                  <  1:5613988/35‑1 (MQ=255)
  aCTGACGAAAGTCAGTTCAATTTACTAAAGGCaaa                                  >  1:2457051/1‑35 (MQ=255)
   cccagcaccgaggttgccacaatgcggctaaaaaa                                 <  1:15034236‑M1/4‑1 (MQ=255)
   cTGACGAAAGTCAGTTCAATTTACTAAAGGCaaaa                                 >  1:2543785/1‑35 (MQ=255)
    tGAGGAAAGTCAGTTCAATTTACTAAAGGCaaaaa                                >  1:334515/1‑35 (MQ=255)
    tGACGAAAGTCAGTTCAATTTACTAAAGGCaaaaa                                >  1:1305740/1‑35 (MQ=255)
    tGACGAAAGTCAGTTCAATTTACTAAAGGCaaaaa                                >  1:2757330/1‑35 (MQ=255)
     gACGAAAGTCAGTTCAATTTACTAAAGGCaaaaaa                               <  1:9645765/35‑1 (MQ=255)
      aCGAAAGTCAGTTCAATTTACTAAAGGCaaaaaaa                              >  1:18168499/1‑35 (MQ=255)
      aCGAAAGTCAGTTCAATTTACTAAAGGCaaaaaaa                              >  1:1938052/1‑35 (MQ=255)
       cGAAAGTCAGTTCAATTTACTAAAGGCaaaaaaaa                             <  1:14828981/35‑1 (MQ=255)
       cGAAAGTCAGTTCAATTTACTAAAGGCaaaaaaaa                             >  1:7200272/1‑35 (MQ=255)
       cGAAAGTCAGTTCAATTTACTAAAGGCaaaaaaaa                             >  1:12732283/1‑35 (MQ=255)
        gAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAc                            >  1:5178929/1‑35 (MQ=255)
        gAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAc                            >  1:2692412/1‑35 (MQ=255)
        gAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAc                            <  1:11423806/35‑1 (MQ=255)
        caccgaggttgccacaatgcggctaaAAAAAAAAc                            <  1:2638718‑M1/9‑1 (MQ=255)
         accgaggttgccacaatgcggctaaAAAAACAacg                           <  1:13624980‑M1/10‑2 (MQ=255)
         accgaggttgccacaatgcggctaaAAAAACAAcc                           <  1:9473417‑M1/10‑1 (MQ=255)
         aaaGTCAGTTCAATTTACTAAAGGCAAAAAAAAcc                           >  1:18716610/1‑35 (MQ=255)
         aaaGTCAGTTCAATTTACTAAAGGCAAAAAAAAcc                           >  1:9167751/1‑35 (MQ=255)
         aaaGTCAGTTCAATTTACTAAAGGCAAAAAAAAcc                           >  1:15373131/1‑35 (MQ=255)
         aaaGTCAGTTCAATTTACTAAAGGCAAAAAAAAcc                           <  1:15542499/35‑1 (MQ=255)
          ccgaggttgccacaatgcggctaaAAAAAAAAccc                          <  1:18354127‑M1/11‑1 (MQ=255)
          aaGTCAGTTCAATTTACTAAAGGCAAAAAAAACCc                          <  1:15252871‑M2/35‑2 (MQ=255)
          aaGTCAGTTCAATTTACTAAAGGCAAAAAAAACCc                          <  1:15387150‑M2/35‑2 (MQ=255)
          aaGTCAGTTCAATTTACTAAAGGCAAAAAAAACCc                          >  1:8127690‑M2/1‑34 (MQ=255)
           cgaggttgccacaatgcggctaaAAAAAAAacccg                         <  1:5120000‑M1/12‑2 (MQ=255)
           cgaggttgccacaatgcggctaaAAAAAAAAaccc                         <  1:13993658‑M1/12‑1 (MQ=255)
           aGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC                         <  1:16973270‑M1/35‑1 (MQ=255)
           aGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC                         <  1:19956978‑M1/35‑1 (MQ=255)
           aGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC                         >  1:4581651‑M1/1‑35 (MQ=255)
           aGTAAGTTCAATTTACTAAAGGCAAAAAAAACCCC                         <  1:20563512‑M1/35‑1 (MQ=255)
            gaggttgccacaatgcggctaaAAAAAAAACCCCg                        <  1:5047690‑M1/13‑1 (MQ=255)
            gTCAGTTCAATTTACTAAAGGCAAAAAAAACCccg                        <  1:1575650‑M2/35‑4 (MQ=255)
            gTCAGTTCAATTTACTAAAGGCAAAAAAAACCccg                        >  1:11359193‑M2/1‑32 (MQ=255)
            gTCAGTTCAATTTACTAAAGGCAAAAAAAACCccg                        >  1:8008890‑M2/1‑32 (MQ=255)
             tCAGTTCAATTTACTAAAGGCAAAAAAAACCccgc                       >  1:7378951‑M2/1‑31 (MQ=255)
              ggttgccacaatgcggctaaAAAAAAAACCCcgcg                      <  1:8441329‑M1/15‑2 (MQ=255)
              cAGTTCAATTTACTAAAGGCAAAAAAAACCCCgca                      >  1:14209868/1‑35 (MQ=255)
              aaGTTCAATTTACTAAAGGCAAAAAAAACCCCgca                      <  1:12478444/34‑1 (MQ=255)
               aGTTCAATTTACTAAAGGCAAAAAAAACCCCgcag                     >  1:2296750/1‑35 (MQ=255)
               aGTTCAATTTACTAAAGGCAAAAAAAACCCCgcag                     >  1:11379077/1‑35 (MQ=255)
               aGTTCAATTTACTAAAGGCAAAAAAAACCCCgcag                     >  1:16639227/1‑35 (MQ=255)
                gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc                    <  1:10910856/35‑1 (MQ=255)
                gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc                    <  1:8223495/35‑1 (MQ=255)
                gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc                    <  1:3761958/35‑1 (MQ=255)
                 ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca                   <  1:6384241/35‑1 (MQ=255)
                 ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca                   <  1:16854840/35‑1 (MQ=255)
                 ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca                   <  1:7883378/35‑1 (MQ=255)
                 ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca                   <  1:12200025/35‑1 (MQ=255)
                  tCAATTTACTAAAGGCAAAAAAAACCCCGcagcag                  <  1:14451638/35‑1 (MQ=255)
                   cAATTTCCAAAAGGAAAAAAAACCCCCGCagcagc                 <  1:18657580/35‑1 (MQ=19)
                   cAATTTACTAAAGGCAAAAAAAACCCCGCagcagc                 <  1:18289317/35‑1 (MQ=255)
                    aaTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCg                <  1:828849/35‑1 (MQ=255)
                    aaTTTACTAAAGGCAAAAAAAACACCGCAGCAGCg                <  1:803175/35‑1 (MQ=255)
                     aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCgg               >  1:3910496/1‑35 (MQ=255)
                      tttACTAAAGGCAAAAAAAACCCCGCAGCAGCggg              >  1:20420935/1‑35 (MQ=255)
                       ttACTAAAGGCAAAAAAAACCCCGCAGCAGCgggg             >  1:3375551/1‑35 (MQ=255)
                       ttACTAAAGGCAAAAAAAACCCCGCAGCAGCgggg             <  1:11188469/35‑1 (MQ=255)
                        tACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGt            >  1:941236/1‑35 (MQ=255)
                        tACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGt            <  1:1637030/35‑1 (MQ=255)
                        tACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGt            >  1:14398195/1‑35 (MQ=255)
                         aCTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGtt           <  1:4894287/35‑1 (MQ=255)
                          cTAAAGGCAAAAAAAACCCCGCAGCAGCGTGGgtt          >  1:9784866/1‑35 (MQ=37)
                          cTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGttt          >  1:19113832/1‑35 (MQ=255)
                           tAAAGGCAAAAAAATCCCCGCAGCAGCGGGGtttt         <  1:20038400/35‑1 (MQ=255)
                           tAAAGGCAAAAAAAACCCCGCAGCAGCGGGGtttt         >  1:10047213/1‑35 (MQ=255)
                           tAAAGGCAAAAAAAACCCCGAAGCAGCGGGGtttt         <  1:13300148/35‑1 (MQ=255)
                           tAAAGGCAAAAAAAACCACGCAGCAGCGGGGtttt         <  1:4393024/35‑1 (MQ=255)
                            aaaGGCAAAAAAAACCCCGCAGCAGCTGGGttttt        >  1:3210301/1‑35 (MQ=255)
                            aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt        >  1:11777366/1‑35 (MQ=255)
                            aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt        <  1:6719121/35‑1 (MQ=255)
                            aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt        >  1:13526826/1‑35 (MQ=255)
                            aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt        <  1:18778050/35‑1 (MQ=255)
                             aaGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTc       >  1:13913022/1‑35 (MQ=255)
                             aaGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTc       >  1:14508070/1‑35 (MQ=255)
                              ccgcaAAAAAAACCCCccagccataaagcgatgcc      <  1:10323102‑M1/33‑20 (MQ=255)
                               ggCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTa     >  1:6129370/1‑35 (MQ=255)
                                gCAAAAAAAACCCCccagccataaagcgatgccgc    <  1:5987452‑M1/35‑22 (MQ=255)
                                ccaAAAAAACCCccgccagaaatcagggcaaagat    >  1:6125878‑M2/2‑12 (MQ=255)
                                ccaAAAAAAACCCCccagccataaagcgatgccgc    <  1:4701778‑M1/34‑22 (MQ=255)
                                acaAAAAAAACCCCccagccataaagcgatgccgc    <  1:10539573‑M1/34‑22 (MQ=255)
                                 cAAAAAAACCCCCagccgcgcggcgcaggtgaagt   <  1:16884076‑M1/35‑23 (MQ=255)
                                 cAAAAAAACCCCCagccgcgcggcgcaggtgaagt   <  1:6571056‑M1/35‑23 (MQ=255)
                                 cAAAAAAAACCccgccagaaatcagggcaaagata   >  1:4744627‑M2/1‑11 (MQ=255)
                                 cAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTAcc   >  1:10318546/1‑35 (MQ=255)
                                  aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa  <  1:16044588/35‑1 (MQ=255)
                                  aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa  <  1:9718080/35‑1 (MQ=255)
                                  aaaaaaaaCCCAGCAGCAGCGGGGTTTTTCTACCa  <  1:8858472/35‑1 (MQ=255)
                                  |                                  
TAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCA  >  REL606/1036026‑1036094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.