New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1495445 =79 (0.770)10 (0.110) 4/44 NT 13.0% coding (648/1500 nt) ansP L‑asparagine transporter
?REL606 3277263 = 61 (0.650)coding (763/987 nt) yrbH D‑arabinose 5‑phosphate isomerase

Only 100 of 135 total aligned reads displayed.

CGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGT  >  REL606/3277229‑3277297
                                  |                                  
cGATGACAATATGATGATTGAAGGCATCTTTACCg                                    <  1:17763689/35‑1 (MQ=255)
cGATGACAATATGATGATTGAAGGCATCTTTACCg                                    <  1:15776499/35‑1 (MQ=255)
cGATGACAATATGATGATTGAAGGCATCTTTACCg                                    >  1:2844694/1‑35 (MQ=255)
cGATGACAATATGATGATTGAAGGCATCTTTACCg                                    <  1:3365638/35‑1 (MQ=255)
cGATGACAATATGATGATTGAAGGCATCTTTACCg                                    >  1:14072790/1‑35 (MQ=255)
cGATGACAATATGATGATTGAAGGCATCTTTACCg                                    >  1:405550/1‑35 (MQ=255)
cGATGACAATATGATGATTGAAGGCATCTTTACCg                                    <  1:6739692/35‑1 (MQ=255)
 gATGACAATATGATGATTGAAGGCATCTTTACCGa                                   >  1:9449015/1‑35 (MQ=255)
  aTGACAATATGATGATTGAAGGCATCTTTACCGAc                                  >  1:670441/1‑35 (MQ=255)
  aTGACAATATGATGATTGAAGGCATCTTTACCGAc                                  >  1:13488733/1‑35 (MQ=255)
  aTGACAATATGATGATTGAAGGCATCTTTACCGAc                                  >  1:9624029/1‑35 (MQ=255)
   tGACAATATGATGATTGAAGGCATCTTTACCGACg                                 >  1:15799272/1‑35 (MQ=255)
   tGACAATATGATGATTGAAGGCATCTTTACCGACg                                 >  1:8568157/1‑35 (MQ=255)
   tGACAATATGATGATTGAAGGCATCTTTACCGACg                                 >  1:10533391/1‑35 (MQ=255)
   tGACAATATGATGATTGAAGGCATCTTTACCGACg                                 >  1:3677283/1‑35 (MQ=255)
   tGACAATATGATGATTGAAGGCATCTTTACCGACg                                 >  1:13692635/1‑35 (MQ=255)
    gACAATATGATGATTGAAGGCATCTTTACCGACgg                                <  1:15442151/35‑1 (MQ=255)
     aCAATATGATGATTGAAGGCATCTTTACCGACggg                               >  1:20295024/1‑34 (MQ=255)
     aCAATATGATGATTGAAGGCATCTTTACCGACggg                               >  1:9806884/1‑34 (MQ=255)
     aCAATATGATGATTGAAGGCATCTTTACCGACGGt                               >  1:5364629/1‑35 (MQ=255)
      cAATATGATGATTGAAGGCATCTTTACCGACgggg                              >  1:1979823/1‑33 (MQ=255)
      cAATATGATGATTGAAGGCATCTTTACCGACgggg                              >  1:16243708/1‑33 (MQ=255)
       aaTATGATGATTGAAGGCATCTTTACCGACGGTGa                             >  1:9920784/1‑35 (MQ=255)
       aaTATGATGATTGAAGGCATCTTTACCGACGGGGa                             >  1:2072690/1‑35 (MQ=255)
         tatGATGATTGAAGGCATCTTTACCGACGGTGAtt                           >  1:7921496/1‑35 (MQ=255)
         tatGATGATTGAAGGCATCTTTACCGACGGGGAtt                           >  1:11166623/1‑35 (MQ=255)
         tatGATGATTGAAGGCATCTTTACCGACGGGGAtt                           >  1:11453108/1‑35 (MQ=255)
         tatGATGATTGAAGGCATCTTTACCGACGGGGAtt                           >  1:11749146/1‑35 (MQ=255)
         tatGATGATTGAAGGCATCTTTACCGACGGGGAtt                           >  1:10503285/1‑35 (MQ=255)
          atgatgATTGAAGGCATCTTTACCGACGGGGAttt                          >  1:18194205/1‑35 (MQ=255)
           tgatgaTTGAAGGCATCTTTACCGACGGGGGTTTa                         >  1:15892949/1‑35 (MQ=25)
           tgatgaTTGAAGGCATCTTTACCGACGGGGATTTa                         >  1:20380140/1‑35 (MQ=255)
            gatgatTGAAGGCATCTTTACCGACGGTGATTTAc                        >  1:16902377/1‑35 (MQ=255)
             atgatTGAAGGCATCTTTACCGACGGGGATTTTCg                       >  1:6417198/1‑35 (MQ=21)
               gatTGAAGGCATCTTTCCAGACGGTGATTTACGcc                     <  1:11237802/35‑1 (MQ=37)
               gatTGAAGGCATCTTTCCAGACGGTGATTTACGcc                     <  1:11233966/35‑1 (MQ=37)
               gatTGAAGGCATCTTTACCGACGGGGATTTACGcc                     >  1:13159123/1‑35 (MQ=255)
               gatTGAAGGCATCTTTACCGACGGCGATTTATGcc                     >  1:19720267/1‑35 (MQ=17)
                atTGAAGGCATCTTTACCGACGGGGATTTACGCCg                    >  1:20177667/1‑35 (MQ=255)
                atTGAAGGCATCTTTACCGACGGGGATTTACGCCg                    >  1:1604201/1‑35 (MQ=255)
                atTGAAGGCATCTTTACCGACGGGGATTTACGCCg                    >  1:9320528/1‑35 (MQ=255)
                atTGAAGGCATCTTTACCGACGGGGATTTACGCCg                    >  1:13748058/1‑35 (MQ=255)
                 ttGAAGGCATCTTTCCCGACGGTGATTTACGCCgt                   <  1:5977732/35‑1 (MQ=255)
                 ttGAAGGCATCTTTACCGACGGTGATTTACGCCgt                   >  1:2760827/1‑35 (MQ=255)
                 ttGAAGGCATCTTTACCGACGGTGATTTACGCCgt                   >  1:17772272/1‑35 (MQ=255)
                 ttGAAGGCATCTTTACCGACGGGGATTTACGCCgt                   >  1:16507411/1‑35 (MQ=255)
                  tGAAGGCATCTTTCCCGACGGTGATTTACGCCgtg                  <  1:6655859/35‑1 (MQ=255)
                  tGAAGGCATCTTTCCCGACGGTGATTTACGCCgtg                  <  1:18654725/35‑1 (MQ=255)
                  tGAAGGCATCTTTACCGACGGGGATTTACGCCttg                  >  1:14351943/1‑35 (MQ=18)
                  tGAAGGCATCTTTACCGACGGGGATTTACGCCgtg                  >  1:4958262/1‑35 (MQ=255)
                   gAAGGCATCTTTACCGACGGTGATTTACGCCgtgt                 >  1:820418/1‑35 (MQ=255)
                   gAAGGCATCTTTACCGACGGGGATTTACGCCgtgt                 >  1:7763028/1‑35 (MQ=255)
                    aaGGCATCTTTCCCGACGGTGATTTACGCCGTGTc                <  1:13020776/35‑1 (MQ=255)
                    aaGGCATCTTTCCCGACGGTGATTTACGCCGTGTc                <  1:18939822/35‑1 (MQ=255)
                    aaGGCATCTTTACCGACGGTGATTTACGCCGTGTc                >  1:15306661/1‑35 (MQ=255)
                    aaGGCATCTTTACCGACGGGGATTTACGCCGTGTc                >  1:1643026/1‑35 (MQ=255)
                    aaGGCATCTTTACCGACGGGGATTTACCCCgtgtg                >  1:6401893/1‑34 (MQ=18)
                     cggcttcttccccGACGGTGATTTACGCCGTGTCt               <  1:20593172‑M2/22‑1 (MQ=255)
                     aggcttcttccccGACGGTGATTTACGCCGTGTCt               <  1:4288075‑M2/22‑1 (MQ=255)
                     aGGCATCTTTACCGACGGTGATTTACGCCGTGTCt               >  1:17405772/1‑35 (MQ=255)
                     aGGCATCTTTACCGACGGTGATTTACGCCGTGTCt               >  1:10679773/1‑35 (MQ=255)
                     aGGCATCTTTACCGACGGGGATTTACGCCGTGTCt               >  1:1492853/1‑35 (MQ=255)
                      ggCATCTTTCCCGACGGTGATTTACGCCGTGTCtt              <  1:13215994/35‑1 (MQ=255)
                      ggCATCTTTCCCGACGGTGATTTACGCCGTGTCtt              <  1:6132289/35‑1 (MQ=255)
                      gccATCTTTCCCGACGGTGATTTACGCCGTGTCtt              <  1:15142932/33‑1 (MQ=38)
                       gcttcttccccGACGGTGATTTACGCCGTGTCTTc             <  1:2690099‑M2/24‑1 (MQ=255)
                       gcctCTTTCCCGACGGTGATTTACGCCGTGTCTTc             <  1:10662519/32‑1 (MQ=37)
                       gCATCTTTACCGACGGTGATTTACGCCGTGTCTTc             >  1:5852443/1‑35 (MQ=255)
                        cttcttccccGACGGTGATTTACGCCGTGTCTTCg            <  1:8514444‑M2/25‑1 (MQ=255)
                        cttcttccccGACGGTGATTTACGCCGTGTCTTCg            <  1:7029678‑M2/25‑1 (MQ=255)
                         ttcttccccGACGGTGATTTACGCCGTGTCTTCGa           <  1:944810‑M2/26‑1 (MQ=255)
                         aTCTTTACCGACGGTGATTTACGCCGTGTCTTCGa           >  1:12285374/1‑35 (MQ=255)
                          tCTTTACCGACGGTGATTTACTCCGTGTCTTCGat          >  1:13388724/1‑35 (MQ=255)
                          tCTTTACCGACGGTGATTTACGCCGTGTCTTCgct          >  1:9177863/1‑33 (MQ=255)
                           cttccccGACGGTGATTTACGCCGTGTCTTCGata         <  1:8244181‑M2/28‑1 (MQ=255)
                           cttccccGACGGTGATTTACGCCGTGTCTTCGata         <  1:15063973‑M2/28‑1 (MQ=255)
                           cTTTACCGACGGTGATTTACGCCGTGTCTTCGata         >  1:14053383/1‑35 (MQ=255)
                            tttcccGACGGTGATTTACGCCGTGTCTTCGatat        <  1:11270761‑M2/29‑1 (MQ=255)
                            tttACCGACGGTGATTTACGCCGTGTCTTCGatat        >  1:18700753/1‑35 (MQ=255)
                            ttccccGACGGTGATTTACGCCGTGTCTTCGatat        <  1:20022954‑M2/29‑1 (MQ=255)
                             ttACCGACGGGGATTTACGCCGTGTCTTCGATATg       >  1:17607894/1‑35 (MQ=255)
                             tccccGACGGTGATTTACGCCGTGTCTTCGATATg       <  1:13811692‑M2/30‑1 (MQ=255)
                              tcccGACGGTGATTTACGCCGTGTCTTCGATATgg      <  1:11481198‑M2/31‑1 (MQ=255)
                              ccccGACGGTGATTTACGCCGTGTCTTCGATATgg      <  1:17056051‑M2/31‑1 (MQ=255)
                               cccGACGGTGATTTACGCCGTGTCTTCGATATggg     <  1:14049030‑M2/32‑1 (MQ=255)
                                ccGACGGTGATTTACGCCGTGTCTTCGATATGGGc    <  1:7488057‑M2/33‑1 (MQ=255)
                                ccGACGGTGATTTACGCCGTGTCTTCGATATGGGc    <  1:5177673‑M2/33‑1 (MQ=255)
                                ccGACGGTGATTTACGCCGTGTCTTCGATATGGGc    <  1:9141252‑M2/33‑1 (MQ=255)
                                ccGACGGTGATTTACGCCGTGTCTTCGATATGGGc    <  1:20141091‑M2/33‑1 (MQ=255)
                                ccGACGGTGATTTACGCCGTGTCTTCGATATGGGc    >  1:1708441‑M2/3‑35 (MQ=255)
                                ccGACGGTGATTTACGCCGTGTCTTCGATATAGGc    <  1:15583704‑M2/33‑1 (MQ=255)
                                 cGACGGTGATTTACGCCGTGTCTTCGATATGGGCg   >  1:4439616‑M2/2‑35 (MQ=255)
                                 cGACGGTGATTTACGCCGTGTCTTCGATATGGGCg   <  1:14444920‑M2/34‑1 (MQ=255)
                                  gACGGTGATTTACGCCGTGTCTTCGATATGGGCgg  >  1:1030192/1‑34 (MQ=255)
                                  gACGGTGATTTACGCCGTGTCTTCGATATGGGCGt  <  1:13203530/35‑1 (MQ=255)
                                  gACGGTGATTTACGCCGTGTCTTCGATATGGGCGt  >  1:1271246/1‑35 (MQ=255)
                                  gACGGTGATTTACGCCGTGTCTTCGATATGGGCGt  <  1:8481738/35‑1 (MQ=255)
                                  gACGGTGATTTACGCCGTGTCTTCGATATGGGCGt  >  1:3047518/1‑35 (MQ=255)
                                  gACGGTGATTTACGCCGTGTCTTCGATATGGGCGt  >  1:14602332/1‑35 (MQ=255)
                                  gACGGTGATTTACGCCGTGTCTTCGATATGGGCGt  <  1:20245432/35‑1 (MQ=255)
                                  |                                  
CGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGT  >  REL606/3277229‑3277297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.