New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1145450 | 100 (0.970) | 8 (0.100) | 4/36 | NT | 10.0% | intergenic (‑15/‑140) | flgA/flgB | flagellar basal body P‑ring biosynthesis protein A/flagellar basal‑body rod protein B |
? | REL606 | = 3613817 | 69 (0.900) | coding (1255/1950 nt) | yhjK | predicted diguanylate cyclase |
Only 100 of 159 total aligned reads displayed.
GCACTGACCAGTTTACCGCTGGTCATCTCGACCTGTGGCTGTAACCAAATAGCAAACTGATGATTTTCC > REL606/3613783‑3613851 | gCACTGACCAGTTTACCGCTGGTCATCTAGACCtg < 1:6162882/35‑1 (MQ=255) cACTGACCAGTTTACCGCTGGTCATCTCGACCTGt < 1:17822454‑M2/35‑2 (MQ=255) cACTGACCAGTTTACCGCTGGTCATCTCGACCTGt < 1:2730403‑M2/35‑2 (MQ=255) aCTGACCAGTTTACCGCTGGTCATCTCGACCTGtg < 1:16560975‑M2/35‑3 (MQ=255) aCTGACCAGTTTACCGCTGGTCATCTCGACCTGtg < 1:5629024‑M2/35‑3 (MQ=255) aCTGACCAGTTTACCGCTGGTCATCTCGACCTGtg < 1:13664452‑M2/35‑3 (MQ=255) cTGACCAGTTTACCGCTGGTCATCTCGACCTGtgg < 1:5996164‑M2/35‑4 (MQ=255) cTGACCAGTTTACCGCTGGTCATCTCGACCTGtgg < 1:15419607‑M2/35‑4 (MQ=255) cTGACCAGTTTACCGCTGGTCATCTCGACCTGtgg < 1:4176129‑M2/35‑4 (MQ=255) tGACCAGTTTACCGCTGGTCATCTCGACCTGtggc < 1:18945157‑M2/35‑5 (MQ=255) tGACCAGTTTACCGCTGGTCATCTCGACCTGtggc < 1:20185828‑M2/35‑5 (MQ=255) tGACCAGTTTACCGCTGGTCATCTCGACCTGtggc < 1:15296884‑M2/35‑5 (MQ=255) gcccATTTTCCCGCTGGTCATCTCGACCTGTGGCt < 1:16071771/33‑1 (MQ=25) gACCAGTTTCCCGCTGGTCATCTCGACCTGtggct > 1:385226‑M2/1‑30 (MQ=255) gACCAGTTTCCCGCTGGTCATCTCGACCTGtggct > 1:11420197‑M2/1‑30 (MQ=255) gACCAGTTTACCGCTGGTCATCTCGACCTGtggct < 1:3723687‑M2/35‑6 (MQ=255) gACCAGTTTACAGCTGGTCATCTCGACCTGtggct > 1:7027816‑M2/1‑30 (MQ=255) aCCATTTTACCGCTGGTCATCTCGACCTGtggctg > 1:6897450‑M2/1‑29 (MQ=255) aCCATTTTACCGCTGGTCATCTCGACCTGtggctg > 1:13628533‑M2/1‑29 (MQ=255) ccAGTTTCCCGCTGGTCATCTCGACCTGTGGCTGt < 1:16364023/35‑1 (MQ=255) ccAGTTTACCGCTGGTCATCTCGACCTGtggctgg < 1:9601908‑M2/35‑8 (MQ=255) cAGTTTCCCGCTGGTCATCTCGACCTGTGGCTGTa < 1:10568966/35‑1 (MQ=255) cAGTTTCCCGCTGGTCATCTCGACCTGTGGCTGTa < 1:17356736/35‑1 (MQ=255) cAGTTTACCGCTGGTCATCTCGACCTGTGGCTGTa < 1:3437096/35‑1 (MQ=255) aGTTTACCGCTGGTCATCTCGACCTGtggctgggg < 1:8356968‑M2/35‑10 (MQ=255) aGTTTACCGCTGGTCATCTCGACCTGTGGCTGTaa < 1:14642500/35‑1 (MQ=255) ttttCCCGCTGGTCATCTCGACCTGTGGCTGTAAc < 1:11748022/34‑1 (MQ=255) gTTTCCCGCTGGTCATCTCGACCTGTGGCTGTAAc < 1:17092226/35‑1 (MQ=255) gTTTCCCGCTGGTCATCTCGACCTGTGGCTGTAAc < 1:5806044/35‑1 (MQ=255) gTTTACCGCTGGTCATCTCGACCTGtggctggggg < 1:8867781‑M2/35‑11 (MQ=255) gTTTACCGCTGGTCATCTCGACCTGtggctggggg < 1:8329763‑M2/35‑11 (MQ=255) gTTTACCGCTGGTCATCTCGACCTGtggctggggg < 1:4234132‑M2/35‑11 (MQ=255) tttCCCGCTGGCCATCTCGACCTGTGGCTGTAAcc < 1:5324973/35‑1 (MQ=37) tttACCGCTGGTCATCTCGACCTGtggctgggggt < 1:10148076‑M2/35‑12 (MQ=255) tttACCGCTGGTCATCTCGACCTGtggctgggggg < 1:1139372‑M2/35‑12 (MQ=255) tttACCGCTGGTCATCTCGACCTGtggctgggggg < 1:9341412‑M2/35‑12 (MQ=255) tttACCGCTGGTCATCTCGACCTGtggctgggggg < 1:6472871‑M2/35‑12 (MQ=255) tttACCGCTGGTCATCTCGACCTGTGGCTGTAAcc < 1:19759909/35‑1 (MQ=255) ttcccGCTGGTCATCTCGACCTGTGGCTGTAACCa < 1:15283915/32‑1 (MQ=255) ttcccGCTGGTCATCTCGACCTGTGGCTGTAACCa < 1:10573693/32‑1 (MQ=255) ttACCGCTGGTCATCTCGACCTGtggctggggggg < 1:1663014‑M2/35‑13 (MQ=255) ttACCGCTGGTCATCTCGACCTGtggctgggagcg < 1:5267305‑M2/35‑13 (MQ=255) ttACCGCTGGTCATCTCGACCTGTGGCTGTAACCa < 1:3502054/35‑1 (MQ=255) tACCGCTGGTCATCTCGACCTGtggctggggggga < 1:11139360‑M2/35‑14 (MQ=255) cccGCTGGTCATCTCGACCTGTGGCTGTAACCaaa < 1:13275193/34‑1 (MQ=255) cccGCTGGTCATCTCGACCTGTGGCTGTAACCaaa < 1:17002802/34‑1 (MQ=255) aCCGCTGGTCATCTCGACCTGtggctgggggcgaa < 1:3871715‑M2/35‑15 (MQ=255) aCCGCTGGTCATCTCGACCTGTTGCTGTAACTaaa > 1:569179/1‑35 (MQ=37) ccGCTGGTCATCTCGCCCTGTGGCTGTAACCAAAt < 1:12369012/35‑1 (MQ=255) ccGCTGGTCATCTCGACCTGTGGCTGTAACCAAAt < 1:11786727/35‑1 (MQ=255) ccGCTGGTCATCTCGACCTGTGGCTGTAACCAAAt < 1:12810923/35‑1 (MQ=255) ccGCTGGTCATCTCGACCTGTGGCTGTAACCAAAt < 1:9557591/35‑1 (MQ=255) ccGCTGGTCATCTCGACCTGTGGCTGTAACCAAAt < 1:9337051/35‑1 (MQ=255) ccGCTGGTCATCTCGACCTGTGGCTGTAACCAAAt < 1:14525974/35‑1 (MQ=255) ccGCAGGTCATCTCGACCTGTGGCTGTAACCAAAt < 1:6101809/35‑1 (MQ=255) cGCTGGTCATCTCGACCTGTGGCTGTAACCAAATa < 1:2346857/35‑1 (MQ=255) cGCTGGTCATCTCGACCTGTGGCTGTAACCAAATa < 1:228184/35‑1 (MQ=255) gCTGGTCATCTCGACCTGtggctgggggggaaaaa < 1:18138525‑M2/35‑18 (MQ=255) cTGGTCATCTCGACCTGtggctgggggcgaaaagc < 1:2976972‑M2/35‑19 (MQ=255) cTGGTCATCTCGACCTGTGGCTGTAACCAAATAGc < 1:10119005/35‑1 (MQ=255) cTGGTCATCTCGACCTGTGGCTGTAACCAAATAGc < 1:13526058/35‑1 (MQ=255) cTGGTCATCTCGACCTGTGGCTGTAACCAAATAGc < 1:17755312/35‑1 (MQ=255) cTGGTCATCTCGACCTGTGGCTGTAACCAAATAGc < 1:5932291/35‑1 (MQ=255) tGGTCATCTCGACCTGTGGCTGTAACCAAATAGCa < 1:734186/35‑1 (MQ=255) tGGTCATCTCGACCTGTGGCTGTAACCAAATAGCa < 1:7091030/35‑1 (MQ=255) tGGTCATCTCGACCTGTGGCTGTAACCAAATAGCa < 1:17975941/35‑1 (MQ=255) tGGTCATCTCGACCTGTGGCTGTAACCAAATAGCa < 1:11583355/35‑1 (MQ=255) ggTCATCTCGACCTGTGGCTGTAACCAAATAGCaa < 1:12112526/35‑1 (MQ=255) ggTCATCTCGACCTGTGGCTGTAACCAAATAGCaa < 1:18194058/35‑1 (MQ=255) gTCATCTCGACCTGTGGCTGTAACCAAATAGCaaa < 1:9946625/35‑1 (MQ=255) gTCATCTCGACCTGTGGCTGTAACCAAATAGCaaa < 1:223107/35‑1 (MQ=255) gTCATCTCGACCTGTGGCTGTAACCAAATAGCaaa < 1:20534358/35‑1 (MQ=255) gTCATCTCGACCTGTGGCTGTAACCAAATAGCaaa < 1:15774585/35‑1 (MQ=255) gTCATCTCGACCTGTGGCTGTAACCAAATAGCaaa < 1:19322848/35‑1 (MQ=255) tCATCTCGACCTGTGGCTGTAACCAAATAGCAAAc < 1:3549401/35‑1 (MQ=255) tCATCTCGACCTGTGGCTGTAACCAAATAGCAAAc < 1:3404122/35‑1 (MQ=255) tCATCTCGACCTGTGGCTGTAACCAAATAGCAAAc < 1:4430932/35‑1 (MQ=255) aTCTCGACCTGTGGCTGTAACCAAATAGCAAACtg < 1:7547498/35‑1 (MQ=255) aTCTCGACCTGTGGCTGTAACCAAATAGCAAACtg < 1:13617555/35‑1 (MQ=255) aTCTCGACCTGTGGCTGTAACCAAATAGCAAACtg < 1:19711532/35‑1 (MQ=255) tctcGCCCTGTGGCTGTAACCAAATAGCAAACtga < 1:19174706/35‑1 (MQ=255) tctcGACCTGTGGCTGTAACCAAATAGCAAACtga < 1:12911418/35‑1 (MQ=255) tctcGACCTGTGGCTGTAACCAAATAGCAAACtga < 1:6443229/35‑1 (MQ=255) tctcGACCTGTGGCTGTAACCAAATAGCAAACtga < 1:20249172/35‑1 (MQ=255) tcgcGACCTTTGGCTGTAACCAAATAGCAAACtga < 1:20119364/32‑1 (MQ=37) ctcGACCTGTGGCTGTAACCAAATAGCAAACtgat < 1:18405826/35‑1 (MQ=255) ctcGACCTGTGGCTGTAACCAAATAGCAAACtgat < 1:16591456/35‑1 (MQ=255) ctcGACCTGTGGCTGTAACCAAATAGCAAACtgat < 1:7126201/35‑1 (MQ=255) tcGCCCTGTGGCTGTAACCAAATAGCAAACtgatg < 1:16090885/35‑1 (MQ=255) tcGACCTGTGGCTGTAACCAAATAGCAAACtgatg < 1:1113706/35‑1 (MQ=255) gcccTGTGGCTGTAACCAAATAGCAAACTgatgat < 1:9115695/33‑1 (MQ=255) aCCTGTGGCTGTAACCAAATAGCAAACTGATGAtt < 1:14977675/35‑1 (MQ=255) ccTGTGGCTGTAACCAAATAGCAAACTGATGAttt < 1:8501577/35‑1 (MQ=255) ccTGTGGCTGTAACCAAATAGCAAACTGATGAttt < 1:19019820/35‑1 (MQ=255) ccTGTGGCTGTAACCAAATAGCAAACTGATGAttt < 1:19086871/35‑1 (MQ=255) ccTGTGGCTGTAACCAAATAGCAAACTGATGAttt < 1:19717513/35‑1 (MQ=255) tgtgGCTGTAACCAAATAGCAAACTGATGATTTTc < 1:16307725/35‑1 (MQ=255) tgtgGCTGTAACCAAATAGCAAACTGATGATTTTc < 1:15910992/35‑1 (MQ=255) tgtgGCTGTAACCAAATAGCAAACTGATGATTTTc < 1:18311357/35‑1 (MQ=255) tgtgGCTGTAACCAAATAGCAAACTGATGATTTTc < 1:12474249/35‑1 (MQ=255) | GCACTGACCAGTTTACCGCTGGTCATCTCGACCTGTGGCTGTAACCAAATAGCAAACTGATGATTTTCC > REL606/3613783‑3613851 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |