New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1544434 = | 52 (0.510) | 6 (0.060) | 4/46 | NT | 10.0% | coding (7/1536 nt) | xasA | predicted glutamate:gamma‑aminobutyric acid antiporter |
? | REL606 | = 2047872 | 58 (0.590) | coding (1256/1395 nt) | wcaM | predicted colanic acid biosynthesis protein |
Only 100 of 111 total aligned reads displayed.
GTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTC > REL606/1544400‑1544468 | tgaacatttgcaagagacagcagtgtttctttttt > 1:10124884‑M1/35‑35 (MQ=255) tgaacatttgcaagagacagcagtgtttctttttt < 1:19404331‑M1/1‑1 (MQ=255) tgaacatttgcaagagacagcagtgtttctttttt > 1:3672904‑M1/35‑35 (MQ=255) tgaacatttgcaagagacagcagtgtttctttttt > 1:13090731‑M1/35‑35 (MQ=255) tgaacatttgcaagagacagcagtgtttctttttt < 1:13271622‑M1/1‑1 (MQ=255) gtgAGCTGCTTAGCTTTACCTGTCTGTACTGATGt > 1:16736296/1‑35 (MQ=255) gtgAGCTGCTTAGCTTTACCTGTCTGTACTGATGt > 1:18779117/1‑35 (MQ=255) gtgAGCTGCTTAGCTTTACCTGTCTGTACTGATGt < 1:4343867/35‑1 (MQ=255) gtgAGCTGCTTAGCTTTACCTGTCTGTACTGATGt > 1:14017073/1‑35 (MQ=255) gtgAGCTGCTTAGCTTTACCTGTCTGTACTGATGt > 1:7119447/1‑35 (MQ=255) tgAGCTGCTTAGCTTTACCTGTCTGTACTGATGTa > 1:16692576/1‑35 (MQ=255) tgAGCTGCTTAGCTTTACCTGTCTGTACTGATGTa > 1:17367878/1‑35 (MQ=255) ggAGCTGCTTAGCTTTACCTGTCTGTACTGATGTa < 1:359800/34‑1 (MQ=255) ggAGCTGCTTAGCTTTACCTGTCTGTACTGATGTa < 1:11705625/34‑1 (MQ=255) naGCTGCTTAGCTTTACCTGTCTGTACTGATGTAg > 1:17225541/2‑35 (MQ=255) gacctgctTAGCTTTACCTGTCTGTACTGATGTAg < 1:6738992/32‑1 (MQ=255) gAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAg > 1:3563697/1‑35 (MQ=255) aGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGc < 1:17173261/35‑1 (MQ=255) aGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGc < 1:3099315/35‑1 (MQ=255) aGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGc < 1:19078981/35‑1 (MQ=255) gctgctTAGCTTTACCTGTCTGTACTGATGTAGcc < 1:4299709/35‑1 (MQ=255) gctgctTAGCTTTACCTGTCTGTACTGATGTAGcc > 1:7839363/1‑35 (MQ=255) gctgctTAGCTTTACCTGTCTGTACTGATGTAGcc < 1:8699891/35‑1 (MQ=255) gctgctTAGCTTTACCTGTCTGTACTGATGTAGcc < 1:17307890/35‑1 (MQ=255) tgctTAGCTTTACCTGTCTGTACTGATGTAGCCat > 1:3844319/1‑35 (MQ=255) gctTAGCTTTACCTGTCTGTACTGATGTAGCCata > 1:15074494/1‑35 (MQ=255) ctTAGCTTTACCTGTCTGTACTGATGTAGCCatat > 1:10823027/1‑35 (MQ=255) ttAGCTTTACCTGTCTGTACTGATGTAGCCAtatt > 1:17153256/1‑35 (MQ=255) ttAGCTTTACCTGTCTGTACTGATGTAGCCAtatt > 1:8592142/1‑35 (MQ=255) ttAGCTTTACCTGTCTGTACTGATGTAGCCAtatt > 1:743163/1‑35 (MQ=255) tAGCTTTACCTGTCTGTACTGATGTAGCCAtatta > 1:13948301/1‑35 (MQ=255) aGCTTTACCTGTCTGTACTGATGTAGCCAtattat > 1:9486891/1‑35 (MQ=255) cTTTACCTGTCTGTACTGATGTAGCCATATTATcc > 1:3605620/1‑35 (MQ=255) tttACCTGTCTGTACTGATGTAGCTATATTATccc > 1:17697957/1‑35 (MQ=255) tttACCTGTCTGTACTGATGTAGCCATATTATccc > 1:10638533/1‑35 (MQ=255) tttACCTGTCTGTACTGATGTAGCCATATTATccc > 1:3843268/1‑35 (MQ=255) ttACCTGTCTGTACTGATGTAGCCATTTTATcccc > 1:16604416/1‑35 (MQ=255) ttACCTGTCTGTACTGATGTAGCCATATTATcccc > 1:9338300/1‑35 (MQ=255) ttACCTGTCTGTACTGATGTAGCCATATTATcccc > 1:4584082/1‑35 (MQ=255) tACCTGTCTGTACTTATGTAGCCATATTATccccc > 1:4974486/1‑35 (MQ=255) aCCTGTCTGTACTGATGTAGCCATATTATCCCCCt > 1:3983445/1‑35 (MQ=255) ccTGTCTGTACTGATGTAGCCATATTATcccccca > 1:3011241/1‑33 (MQ=255) ccTGTCTGTACTGATGTAGCCATATTATCCCCCTa > 1:19219686/1‑35 (MQ=255) ctgtctgtACTGATGTAGCCATATTATCCCCCTaa > 1:2659886/1‑35 (MQ=255) ctgtctgtACTGATGTAGCCATATTATCCCCCTaa > 1:15981580/1‑35 (MQ=255) ctgtctgtACTGATGTAGCCATATTATCCCCCTaa > 1:8651313/1‑35 (MQ=255) tgtctgtACTGATGTAGCCATATTATCCCCCTaaa > 1:4861785/1‑35 (MQ=255) tgtctgtACTGATGTAGCCATATTATCCCCCTaaa > 1:5395833/1‑35 (MQ=255) gtctttACTGTTTTAGCCATATTATCCCCCTaaaa < 1:16610622/35‑1 (MQ=21) gtctgtACTGATGTAGCCATATTATCCCCCTaaaa > 1:14897583/1‑35 (MQ=255) tttgtTCTGTTTTAGCCATATTATCCCCCTAAAAc < 1:15794691/33‑1 (MQ=21) tttgtGCTGTTTTAGCCATATTATCCCCCTAAAAc < 1:18775469/33‑1 (MQ=21) tctgtACTTTTTTAGCCATATTATCCCCCTAAAAc < 1:14518670/35‑1 (MQ=25) tctgtACTGTTTTAGCCATATTATCCCCCTAAAAc < 1:5354764/35‑1 (MQ=25) tctgtACTGATGTAGCCATATTATCCCCCTAAAAc > 1:7368891/1‑35 (MQ=255) tctgtACTGATGTAGCCATATTATCCCCCTAAAAc > 1:6543053/1‑35 (MQ=255) tctgtACTGATGTAGCCATATTATCCCCCTAAAAc > 1:17568710/1‑35 (MQ=255) ctgtACTGATGTAGCCATATTATCCCCCTAAAACg > 1:14705718/1‑35 (MQ=255) tgtATTGTTTTAGCCATATTATCCCCCTAAAACgg < 1:777587/35‑1 (MQ=25) tgtACTGATGTAGCCATATTATCCCCCTAAAACgg > 1:536711/1‑35 (MQ=255) tgtACTGATGTAGCCATATTATCCCCCTAAAACgg > 1:6640614/1‑35 (MQ=255) tttctttttTAGCCATATTATCCCCCAAAAACGGt > 1:4786350‑M1/10‑35 (MQ=255) gttctttttTAGCCATATTATCCCCCTAAAACGGt > 1:15838269‑M1/10‑35 (MQ=255) gttctgtttTAGCCATATTATCCCCCTAAAACGGt > 1:15152720‑M1/10‑35 (MQ=255) gtACTGATTTAGCCATATTATCCCCCTAAAACGGt < 1:3733874/35‑1 (MQ=255) gtACTGATGTAGCCATATTATCCCCCTACAACgat > 1:13276364/1‑33 (MQ=255) gtACTGATGTAGCCATATTATCCCCCTAAAACGGt > 1:3935237/1‑35 (MQ=255) ttctttttTAGCCATATTATCCCCCTAAAACGGTa > 1:3621773‑M1/9‑35 (MQ=255) tACTGATGTAGCCATATTATCCCCCTAAAACGGTa > 1:7032460/1‑35 (MQ=255) tctgtttTAGCCATATTATCCCCCTAAAACGGTAt > 1:2886619‑M1/8‑35 (MQ=255) aCTGTTGTAGCCATATTATCCCCCTAAAACGGTAt < 1:9321989/35‑1 (MQ=255) aCTGATGTAGCCATATTATCCCCCTAAAACTGTAt > 1:5823997/1‑35 (MQ=255) aCTGATGTAGCCATATTATCCCCCTAAAACGGTAt < 1:13843063/35‑1 (MQ=255) ctttttTAGCCATATTATCCCCCTAAAACGGTAtt > 1:20066751‑M1/7‑35 (MQ=255) tgtttTAGCCATATTATCCCCCTAAAACGGTATTc > 1:13186541‑M1/6‑35 (MQ=255) tgtttTAGCCATATTATCCCCCTAAAACGGTATTc > 1:16183324‑M1/6‑35 (MQ=255) tgtttTAGCCATATTATCCCCCTAAAACGGTATTc > 1:19918918‑M1/6‑35 (MQ=255) tGATGTAGCCATATTATCCCCCTAAAACGGTATTc > 1:16812892/1‑35 (MQ=255) ttttTAGCCATATTATCCCCCTAAAACGGTATTcc > 1:2178936‑M1/5‑35 (MQ=255) gtttTAGCCATATTATCCCCCTAAAACGGTATTcc > 1:18057194‑M1/5‑35 (MQ=255) gttGTAGCCATATTATCCCCCTAAAACGGTATTcc < 1:15281242/33‑1 (MQ=255) gATGTAGCCATATTATCCCCCTAAAACGGTATTcc > 1:17355413/1‑35 (MQ=255) gATGTAGCCATATTATCCCCCTAAAACGGTATTcc > 1:19554743/1‑35 (MQ=255) gATGTAGCCATATTATCCCCCTAAAACGGTATTcc > 1:2748890/1‑35 (MQ=255) tttTAGCCATATTATCCCCCTAAAACGGTATTCCt > 1:14180048‑M1/4‑35 (MQ=255) aTGTAGCCATATTATCCCCCTAAAACGGTATTCCt > 1:20148371/1‑35 (MQ=255) aTGTAGCCATATTATCCCCCTAAAACGGTATTCCt > 1:15510738/1‑35 (MQ=255) aTGTAGCCATATTATCCCCCTAAAACGGTATTCCt > 1:11090547/1‑35 (MQ=255) aTGTAGCCATATTATCCCCCTAAAACGGTATTCCt > 1:40370/1‑35 (MQ=255) ttTAGCCATATTATCCCCCTAAAACGGTATTCCTg > 1:7324920‑M1/3‑35 (MQ=255) tGTAGCCATATTATCCCCCTAAAACGGTATTCCTg > 1:12359066/1‑35 (MQ=255) gTAGCCATATTATCCCCCTAAAACGGTATTCCTGt > 1:19346497/1‑35 (MQ=255) gTAGCCATATTATCCCCCTAAAACGGTATTCCTGt > 1:1752464/1‑35 (MQ=255) TAGCCATATTATCCCCCTAAAACGGTATTCCTGTc > 1:6259154‑M1/1‑35 (MQ=255) TAGCCATATTATCCCCCTAAAACGGTATTCCTGTc > 1:14680106‑M1/1‑35 (MQ=255) TAGCCATATTATCCCCCTAAAACGGTATTCCTGTc > 1:13599226‑M1/1‑35 (MQ=255) TAGCCATATTATCCCCCTAAAACGGTATTCCTGTc > 1:7950048‑M1/1‑35 (MQ=255) TAGCCATATTATCCCCCTAAAACGGTATTCCTGTc > 1:4901005‑M1/1‑35 (MQ=255) TAGCCATATTATCACCCTAAAACGGTATTCCTGTc > 1:16836517‑M1/1‑35 (MQ=255) TAGCCATATTATCACCCTAAAACGGTATTCCTGTc > 1:14637318‑M1/1‑35 (MQ=255) | GTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTC > REL606/1544400‑1544468 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |