New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 105493386 (0.840)11 (0.120) 4/44 NT 9.8% coding (103/1545 nt) appC cytochrome bd‑II oxidase, subunit I
?REL606 = 3766502 123 (1.310)coding (1206/1206 nt) gltS glutamate transporter

Only 100 of 150 total aligned reads displayed.

ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTATTATGGAAACCATTTACGTGGTCACCGGCAAAAC  >  REL606/1054899‑1054967
                                  |                                  
aCCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA                                    <  1:3115289‑M1/35‑1 (MQ=255)
aCCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA                                    <  1:3417765‑M1/35‑1 (MQ=255)
aCCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA                                    <  1:4665715‑M1/35‑1 (MQ=255)
 ccccTTACCCTGGGGCTGATTTTTTTGCTGGCtat                                   <  1:18444461/35‑1 (MQ=255)
 ccccTTACCCTGGGGCTGATTTTTTTGCTGGCtat                                   <  1:12933444/35‑1 (MQ=255)
 ccccTTACCCTGGGGCTGATTTTTTTGCTGGCTAa                                   >  1:10285532‑M1/1‑34 (MQ=255)
 ccccTTACCCTGGGGCTGATTTTTTTGCTGGAtat                                   <  1:16576522/35‑1 (MQ=255)
  cccTTACCCTGGGGCTGATTTTTTTGCTGGCtatt                                  <  1:3283979/35‑1 (MQ=255)
  cccTTACCCTGGGGCTGATTTTTTTGCTGGCtatt                                  <  1:1407745/35‑1 (MQ=255)
  cccTTACCCTGGGGCTGATTTTTTTGCTGGCTAaa                                  >  1:13721282‑M1/1‑33 (MQ=255)
   ccTTACCCTGGGGCTGATTTTTTTGCTGGCtatta                                 <  1:18612416/35‑1 (MQ=255)
   ccTTACCCTGGGGCTGATTTTTTTGCTGGCTAaaa                                 >  1:14733607‑M1/1‑32 (MQ=255)
   ccTTACCCTGGGGCTGATTTTTTTGCTGGCTAaaa                                 >  1:9718308‑M1/1‑32 (MQ=255)
    cTTACCCTGGGGCTGATTTTTTTGCTGGCtattat                                <  1:4080322/35‑1 (MQ=255)
    attACCCTGGGGCTGATTTTTTTGCTGGCtattat                                <  1:3690065/34‑1 (MQ=255)
     ttACCCTGGGGCTGATTTTTTTGCTGGCTAaaata                               >  1:13794526‑M1/1‑30 (MQ=255)
     ttACCCTGGGGCTGATTTTTTTGCTGGCTATTATg                               <  1:7536917/35‑1 (MQ=255)
      tACGCTGGGGCTGATTTTTTTGCTGGCTATTATgg                              <  1:15938455/35‑1 (MQ=255)
      tACCCTGGGGCTGATTTTTTTGCTGGCTAaaaata                              >  1:15394268‑M1/1‑29 (MQ=255)
      tACCCTGGGGCTGATTTTTTTGCTGGCTATTATgg                              <  1:2608030/35‑1 (MQ=255)
      tACCCTGGGGCTGATTTTTTTGCTGGCTATTATgg                              <  1:8845206/35‑1 (MQ=255)
       aCCCTGGGGCTGATTTTTTTGCTGGCTATTATGGa                             <  1:11202426/35‑1 (MQ=255)
        cccTGGGGCTGATTTTTTTGCTGGCTAataatgaa                            >  1:15561178‑M1/1‑27 (MQ=255)
         ccTGGGGCTGATTTTTTTGCTGGCTAataatgaaa                           >  1:6001951‑M1/1‑26 (MQ=255)
         ccTGGGGCTGATTTTTTTGCTGGCTAaaattgaaa                           >  1:20311894‑M1/1‑26 (MQ=255)
         ccTGGGGCTGATTTTTTTGCTGGCTAaaattgaaa                           >  1:16346057‑M1/1‑26 (MQ=255)
         ccTGGGGCTGATTTTTTTGCTGGCTAaaaatgaaa                           >  1:70090‑M1/1‑26 (MQ=255)
         ccTGGGGCTGATTTTTTTGCTGGCTATTATGGaaa                           <  1:14148319/35‑1 (MQ=255)
         ccTGGGGCTGATTTTTTTGCTGGCTATTATGGaaa                           <  1:4757869/35‑1 (MQ=255)
         ccTGGGGCTGATTTTTTTGCTGGCTAATATAGaaa                           >  1:13432951/1‑35 (MQ=37)
          cTGGGGCTGATTTTTTTGCTGGCTATTATGGaacc                          <  1:16432451/35‑3 (MQ=255)
          cTGGGGCTGATTTTTTTGCTGGCTATTATGGAAAc                          <  1:1234936/35‑1 (MQ=255)
          cTGGGGCTGATTTTTTTGCTGGCTATTATGGAAAc                          <  1:18727396/35‑1 (MQ=255)
          cTGGGGCTGATTTTTTTGCTGGCTATTATGGAAAc                          <  1:17899632/35‑1 (MQ=255)
           tGGGGCTGATTTTTTTGCTGGCTAaaattgaaaac                         >  1:8033628‑M1/1‑24 (MQ=255)
           tGGGGCTGATTTTTTTGCTGGCTAaaaatgaaaaa                         >  1:6705855‑M1/1‑24 (MQ=255)
           tGGGGCTGATTTTTTTGCTGGCTATTATGGAAAcc                         <  1:12312390/35‑1 (MQ=255)
           tGGGGCTGATTTTTTTGCTGGCTATTATGGAAAcc                         <  1:13796910/35‑1 (MQ=255)
           tGGGGCTGATTTTTTTGCTGGCTAATAAAGaaaac                         >  1:5565190/1‑33 (MQ=18)
            ggggCTGATTTTTTTGCTGGCTAaaaatgaaaaaa                        >  1:1317822‑M1/1‑23 (MQ=255)
            ggggCTGATTTTTTTGCTGGCTATTATGGAAACCn                        <  1:17787760/35‑1 (MQ=255)
             gggCTGATTTTTTTGCTGGCTAaaaatgaaaacaa                       >  1:7677693‑M1/1‑22 (MQ=255)
             gggCTGATTTTTTTGCTGGCTATTATGGAAACCAt                       <  1:19629452/35‑1 (MQ=255)
             gggCTGATTTTTTTGCTGGCTAAAATTGAAAcaaa                       >  1:2145795/1‑32 (MQ=16)
              ggCTGATTTTTTTGCTGGCTATTATGGAAACCAtt                      <  1:7213430/35‑1 (MQ=255)
              ggCTGATTTTTTGCTGGCTATTATGGAAACCAttt                     <  1:13466182/35‑1 (MQ=37)
                cTGATTTTTTTGCTGGCTATTATGGAAACCATTTa                    <  1:14886054/35‑1 (MQ=255)
                cTGATTTTTTTGCTGGCTATTATGGAAACCATTTa                    <  1:2458060/35‑1 (MQ=255)
                cTGATTTTTTTGCTGGCTATTATGGAAACCATTTa                    <  1:19142506/35‑1 (MQ=255)
                cTGATTTTTTTGCTGGCTATTATGGAAACCATTTa                    <  1:19511905/35‑1 (MQ=255)
                 tGATTTTTTTGCTGGCTATTATGGAAACCATTTAc                   <  1:9670800/35‑1 (MQ=255)
                 tGATTTTTTTGCTGGCTATTATGGAAACCATTTAc                   <  1:5804193/35‑1 (MQ=255)
                 tGATTTTTTTGCTGGCTATTATGGAAACCATTTAc                   <  1:20524184/35‑1 (MQ=255)
                 tGATTTTTTTGCTGGCTATTATGGAAACCATTTAc                   <  1:193662/35‑1 (MQ=255)
                 tGATTTTTTTGCTGGCTATTATGGAAACCATTTAc                   <  1:12112326/35‑1 (MQ=255)
                 tGATTTTTTTGCTGGCTATTATGGAAACCATTTAc                   <  1:14051034/35‑1 (MQ=255)
                  gATTTTTTTGCTGGCTATTATGGAAACCATTTACg                  <  1:5446836/35‑1 (MQ=255)
                  gATTTTTTTGCTGGCTATTATGGAAACCATTTACg                  <  1:15658948/35‑1 (MQ=255)
                  gATTTTTTTGCTGGCTATTATGGAAACCATTTACg                  <  1:17119563/35‑1 (MQ=255)
                  gATTTTTTTGCTGGCTATTATGGAAACCATTTACg                  <  1:5628428/35‑1 (MQ=255)
                   aTTTTTTTGCTGGCTATTATGGAAACCATTTACGt                 <  1:4095923/35‑1 (MQ=255)
                    tttttttGCTGGCTATTATGGAAACCATTTACGTg                <  1:4057783/35‑1 (MQ=255)
                     ttttttGCTGGCTATTATGGAAACCATTTACGTgg               <  1:5424167/35‑1 (MQ=255)
                      tttttGCTGGCTATTATGGAAACCATTTACGTGGt              <  1:14796226/35‑1 (MQ=255)
                       ttttGCTGGCTATTATGGAAACCATTTACGTGGTc             <  1:5772643/35‑1 (MQ=255)
                       ttttGCTGGCTATTATGGAAACCATTTACGTGGTc             <  1:12130758/35‑1 (MQ=255)
                       ttttGCTGGCTATTATGGAAACCATTTACGTGGTc             <  1:6280922/35‑1 (MQ=255)
                       ttttGCTGGCTATTATGGAAACCATTTACGTGGTc             <  1:11862900/35‑1 (MQ=255)
                       ttttGCTGGCTATTATGGAAACCATTTACGTGGTc             <  1:7963812/35‑1 (MQ=255)
                        tttGCTGGCTATTATGGAAACCATTTACGTGGTCa            <  1:8556531/35‑1 (MQ=255)
                        tttGCTGGCTATTATGGAAACCATTTACGTGGTCa            <  1:9243952/35‑1 (MQ=255)
                         ttGCTTGCTATTATGGAAACCATTTACGTGGTCAc           <  1:19593542/35‑1 (MQ=255)
                         ttGCTGGCTATTATGGAAACCATTTACGTGGTCAc           <  1:14356434/35‑1 (MQ=255)
                         ttGCTGGCTATTATGGAAACCATTTACGTGGTCAc           <  1:10174453/35‑1 (MQ=255)
                         ttGCTGGCTATTATGGAAACCATTTACGTGGTCAc           <  1:11616135/35‑1 (MQ=255)
                           gCTGGCTATTATGGAAACCATTTACGTGGTCACCg         <  1:15510200/35‑1 (MQ=255)
                           gCTGGCTATTATGGAAACCATTTACGTGGTCACCg         <  1:19004716/35‑1 (MQ=255)
                            cTGGCTATTATGGAAACCATTTACGTGGTCACCgg        <  1:4017505/35‑1 (MQ=255)
                            cTGGCTATTATGGAAACCATTTACGTGGTCACCgg        <  1:5957578/35‑1 (MQ=255)
                            cTGGCTATTATGGAAACCATTTACGTGGTCACCgg        <  1:18513173/35‑1 (MQ=255)
                              ggCTATTATGGAAACCATTTACGTGGTCACCGGCa      <  1:9563440/35‑1 (MQ=255)
                              ggCTATTATGCAAACCATTTACGTGGTCACCGGCa      >  1:8771101/1‑35 (MQ=255)
                               gCTATTATGGAAACCATTTACGTGGTCACCGGCaa     <  1:13595797/35‑1 (MQ=255)
                               gCTATTATGGAAACCATTTACGTGGTCACCGGCaa     >  1:11283958/1‑35 (MQ=255)
                                cTATTATGGAAACCATTTACGTGGTCACCGTCaaa    >  1:20133191/1‑35 (MQ=255)
                                cTATTATGGAAACCATTTACGTGGTCACCGGCaaa    >  1:10129001/1‑35 (MQ=255)
                                cTATTATGGAAACCATTTACGTGGTCACCGGCaaa    <  1:11946981/35‑1 (MQ=255)
                                cTATTATGGAAACCATTTACGTGGTCACCGGCaaa    <  1:3615699/35‑1 (MQ=255)
                                cTATTATGGAAACCATTTACGTGGTCACCGGCaaa    >  1:14220973/1‑35 (MQ=255)
                                 tattatGGAAACGATTTACGTGGTCACCGGCaaaa   <  1:6904939/35‑1 (MQ=255)
                                 tattatGGAAACCATTTACGTGGTCACCGGCaaan   <  1:7248475/35‑1 (MQ=255)
                                 tattatGGAAACCATTTACGTGGTCACCGGCaaaa   >  1:11690599/1‑35 (MQ=255)
                                 tattatGGAAACCATTTACGTGGTCACCGGCaaaa   >  1:2395991/1‑35 (MQ=255)
                                 tattatGGAAACCATTTACGTGGTCACCGGCaaaa   >  1:8204339/1‑35 (MQ=255)
                                 tattatGGAAACCATTTACGTGGTCACCGGCaaaa   >  1:20104987/1‑35 (MQ=255)
                                  attatGGAAACCATTTACGTGGTCACCGGCAAAAc  >  1:2175086/1‑35 (MQ=255)
                                  attatGGAAACCATTTACGTGGTCACCGGCAAAAc  >  1:10324839/1‑35 (MQ=255)
                                  attatGGAAACCATTTACGTGGTCACCGGCAAAAc  <  1:15365706/35‑1 (MQ=255)
                                  aaaaatgaaaaagcgtcggaaggaaccggaaacgc  >  1:18044455‑M1/1‑1 (MQ=255)
                                  aaaaatgaaaaagcgtcggaaggaaccggaaacgc  <  1:16745864‑M1/35‑35 (MQ=255)
                                  |                                  
ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTATTATGGAAACCATTTACGTGGTCACCGGCAAAAC  >  REL606/1054899‑1054967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.