New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1587129 = | 65 (0.630) | 7 (0.090) | 3/36 | NT | 12.3% | coding (244/435 nt) | marR | DNA‑binding transcriptional repressor of multiple antibiotic resistance |
? | REL606 | 2696580 = | 51 (0.660) | coding (481/2145 nt) | nrdE | ribonucleotide‑diphosphate reductase alpha subunit |
GCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1587167‑1587129 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagccACGCCAACATTCCTCAACTGCGGTAAGCAGCAGC > REL606/2696580‑2696613 GCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCC > 1:14718970/1‑35 CGCTTGTCATTCGGGTTCGGCAACCTTTCCCCCCA < 1:17804606/35‑1 CGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCA > 1:404509/1‑35 CGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCA < 1:3331792/35‑1 CGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCA > 1:2804314/1‑35 CGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCA > 1:18461137/1‑35 CGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCA < 1:16274595/35‑1 GCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAG > 1:7508288/1‑35 GCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAG > 1:12261713/1‑35 GCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAG > 1:18808353/1‑35 caTGTCATTCGGGTTCGGCAACCTTTCCACCCAGC < 1:1601224/33‑1 CTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGC < 1:7139676/35‑1 CTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGC > 1:12389342/1‑35 TTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC < 1:9065164/35‑1 TTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC < 1:6382321/35‑1 TTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC < 1:2287841/35‑1 TTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC > 1:10052438/1‑35 TTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC > 1:10251789/1‑35 gTTTCCAGCCAGCCACGCCAACATTCCTCAACTGC < 1:1708035/34‑1 CTTTCCACCCAGCCACGCCAACATTCCTCAACTGC < 1:8965960/35‑1 cTTCCGCCCAGCCACGCCAACATTCCTCAACTGCG < 1:16941114/34‑1 cTTCCACCCAGCCACGCCAACATTCCTCAACTGCG < 1:3390100/34‑1 TTTCCACCCAGCCACGCCAACATTCCTCAACTGCG < 1:3051399/35‑1 tttCACCCAGCCACGCCAACATTCCTCAACTGCGG < 1:4653510/32‑1 tttCACCCAGCCACGCCAACATTCCTCAACTGCGG < 1:1796549/32‑1 TTCCAGCCAGCCACGCCAACATTCCTCAACTGCGG < 1:12331768/35‑1 TTCCACCCAGCCACGCCAACATTCCTCAACTGCGG < 1:16847028/35‑1 TCCACCCAGCCACGCCAACATTCCTCAACTGCGGT < 1:4554814/35‑1 TCCACCCAGCCACGCCAACATTCCTCAACTGCGGT < 1:15557753/35‑1 CCACCCAGCCACGCCAACATTCCTCAACTGCGGTA < 1:2896823/35‑1 CCACCCAGCCACGCCAACATTCCTCAACTGCGGTA < 1:4165843/35‑1 CACCCAGCCACGCCAACATTCCTCAACTGCGGTAA < 1:8977748/35‑1 CACCCAGCCACGCCAACATTCCTCAACTGCGGTAA < 1:13846632/35‑1 ACCCAGCCACGCCAACATTCCTCAACTGCGGTAAG < 1:471338/35‑1 CCCAGCCACGCCAACATTCCTCAACTGCGGTAAGC < 1:10736242/35‑1 CCCAGCCACGCCAACATTCCTCAACTGCGGTAAGC < 1:6177876/35‑1 CCCAGCCACGCCAACATTCCTCAACTGCCGTAAGC < 1:12697658/35‑1 CCAGCCACGCCAACATTCCTCAACTGCGGTAAGCN < 1:15732409/35‑1 CCAGCCACGCCAACATTCCTCAACTGCGGTAAGCA < 1:6435942/35‑1 CCAGCCACGCCAACATTCCTCAACTGCGGTAAGCA < 1:14073691/35‑1 CCAGCCACGCCAACATTCCTCAACTGCGGTAAGCA < 1:12441941/35‑1 CAGCCACGCCAACATTCTTCAACTGCGGTAAGCAG > 1:7843154/1‑35 CAGCCACGCCAACATTCCTCAACTGCGGTAAGCAG > 1:9511675/1‑35 CAGCCACGCCAACATTCCTCAACTGCGGTAAGCAG > 1:4482718/1‑35 CAGCCACGCCAACATTCCTCAACTGCGGTAAGCAG < 1:3964350/35‑1 CAGCCACGCCAACATTCCTCAACTGCGGTAAGCAG < 1:3158460/35‑1 CAGCCACGCCAACATTCCTCAACTGCGGTAAGCAG > 1:15906719/1‑35 GCCACGCCAACATTCCTCAACTGCGTTAAGCAGCA > 1:20065600/1‑35 GCCACGCCAACATTCCTCAACTGCGGTAAGCAGCA < 1:12938985/35‑1 GCCACGCCAACATTCCTCAACTGCGGTAAGCAGCA < 1:7426445/35‑1 GCCACGCCAACATTCCTCAACTGCGGTAAGCAGCA > 1:13568896/1‑35 GCCACGCCAACATTCCTCAACTGCGGTAAGCAGCA < 1:8057963/35‑1 GCCACGCCAACATTCCTCAACTGCGGTAAGCAGCA < 1:8376519/35‑1 GCCACGCCAACATTCCTCAACTGCGGTAAGCAGCA < 1:9380835/35‑1 CCACGCCAACATTCCTCAACTGCGGTAAGCAGCAG < 1:2143897/35‑1 CCACGCCAACATTCCTCAACTGCGGTAAGCAGCAG > 1:20361811/1‑35 CACGCCAACATTCCTCAACTGCTGTAAGCAGCAGC > 1:17653050/1‑35 CACGCCAACATTCCTCAACTGCGGTAAGCAGCAGC < 1:3679970/35‑1 CACCCCAACATTCCTCAACTGCGGTAAGCAGCAGC < 1:4163973/35‑1 GCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1587167‑1587129 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagccACGCCAACATTCCTCAACTGCGGTAAGCAGCAGC > REL606/2696580‑2696613 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |