New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 564054 =42 (0.410)9 (0.120) 3/34 NT 14.5% coding (2252/2973 nt) nfrA bacteriophage N4 receptor, outer membrane subunit
?REL606 1414711 = 76 (1.040)coding (223/276 nt) racC predicted protein

Only 100 of 182 total aligned reads displayed.

TTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACC  >  REL606/1414677‑1414745
                                  |                                  
ttCATTGCAATTAGAGTTGCCAGAAATTCGGCttt                                    >  1:20329868/1‑35 (MQ=255)
ttCATTGCAATTAGAGTTGCCAGAAATTCGGCttt                                    <  1:558801/35‑1 (MQ=255)
 tCATTGCAATTAGAGTTGCCAGAAATTCGGCtttt                                   >  1:17304921/1‑35 (MQ=255)
 ctggacgttcagtttcgattcttctatcggctttt                                   >  1:924259‑M2/34‑35 (MQ=255)
 ctggacgttcagtttcgattcttctatcggctttt                                   >  1:19596845‑M2/34‑35 (MQ=255)
 ctggacgttcagtttcgattcttctatcggctttt                                   >  1:14790910‑M2/34‑35 (MQ=255)
 ctggacgttcagtttcgattcttctatcggctttt                                   >  1:4632149‑M2/34‑35 (MQ=255)
 ctggacgttcagtttcgattcttctatcggctttt                                   >  1:13329512‑M2/34‑35 (MQ=255)
  cATTGCAATTAGAGTTGCCAGAAATTCGGCttttt                                  <  1:8221703/35‑1 (MQ=255)
   aTTGCAATTAGAGTTGCCAGAAATTCGGCtttttt                                 >  1:4105503/1‑35 (MQ=255)
   aTTGCAATTAGAGTTGCCAGAAATTCGGCtttttt                                 >  1:4270241/1‑35 (MQ=255)
   aTTGCAATTAGAGTTGCCAGAAATTCGGCtttttt                                 >  1:14206299/1‑35 (MQ=255)
    ttGCAATTAGAGTTGCCAGAAATTCGGCttttttt                                >  1:17655557/1‑35 (MQ=255)
    ttGCAATTAGAGTTGCCAGAAATTCGGCttttttt                                <  1:18200346/35‑1 (MQ=255)
     tGCAATTAGAGTTGCCAGAAATTCGGCtttttttt                               <  1:16788620/35‑1 (MQ=255)
     tGCAATTAGAGTTGCCAGAAATTCGGCtttttttt                               >  1:2312604/1‑35 (MQ=255)
     acgttcagtttcgattcttctatcggctttttttt                               >  1:6719512‑M2/30‑35 (MQ=255)
     acgttcagtttcgattcttctatcggcttttgttt                               >  1:11615009‑M2/30‑35 (MQ=255)
      gCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTc                              >  1:5602193/1‑35 (MQ=255)
      gCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTc                              <  1:16060659/35‑1 (MQ=255)
      gCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTc                              >  1:3272021/1‑35 (MQ=255)
      cgttcagtttcgattcttctatcggcttTTTTTTc                              >  1:9114290‑M2/29‑35 (MQ=255)
      cgttcagtttcgattcttctatcggcttTTTGTTc                              >  1:15417947‑M2/29‑35 (MQ=255)
      cgttcagtttcgattcttctatcggcttTTGTTTc                              >  1:11993559‑M2/29‑35 (MQ=255)
       gttcagtttcgattcttctatcggcttTTTTTTCt                             >  1:9944821‑M2/28‑35 (MQ=255)
       cgaTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCt                             >  1:12403820/3‑35 (MQ=255)
       cAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCt                             <  1:15746704/35‑1 (MQ=255)
       cAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCt                             <  1:4421806/35‑1 (MQ=255)
        aaTTAGAGTTGCCAGAAATTCTGCTTTTTTTTCTg                            >  1:6825521/1‑35 (MQ=255)
        aaTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTg                            <  1:3047685/35‑1 (MQ=255)
        aaTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTg                            >  1:2262011/1‑35 (MQ=255)
         tcagtttcgattcttctatcggcttTTTTTTTtgg                           >  1:2650312‑M2/26‑34 (MQ=255)
         aTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc                           <  1:8060957/35‑1 (MQ=255)
         aTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc                           <  1:13721951/35‑1 (MQ=255)
         aTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc                           >  1:18099283/1‑35 (MQ=255)
         aTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc                           >  1:497608/1‑35 (MQ=255)
          ttAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCg                          <  1:379240/35‑1 (MQ=255)
           tAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCgg                         <  1:20036948/35‑1 (MQ=255)
            agagTTGCCAGAAATTCGGCTTTTTTTTCTGCggg                        <  1:18258871/35‑1 (MQ=255)
            agagTTGCCAGAAATTCGGCTTTTTTTTCTGCggg                        >  1:11106455/1‑35 (MQ=255)
             gagTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGc                       <  1:8036073/35‑1 (MQ=255)
             gagTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGc                       >  1:10273581/1‑35 (MQ=255)
               gTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAg                     >  1:6362833/1‑35 (MQ=255)
               gTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAg                     >  1:18392636/1‑35 (MQ=255)
                ttGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGa                    <  1:9025724/35‑1 (MQ=255)
                ttGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGa                    >  1:17876176/1‑35 (MQ=255)
                 tGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGAt                   <  1:18597011/35‑1 (MQ=255)
                 tGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGAt                   >  1:16509327/1‑35 (MQ=255)
                 tGCCAGAAATTCGGCTTTTTTTTATGCGGGCAGAt                   <  1:17561097/35‑1 (MQ=255)
                  gCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGAtt                  >  1:11520380/1‑35 (MQ=255)
                  gCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGAtt                  <  1:4442985/35‑1 (MQ=255)
                   ccAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTc                 <  1:1084208/35‑1 (MQ=255)
                   ccAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTc                 >  1:847472/1‑35 (MQ=255)
                   ccAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTc                 <  1:14545833/35‑1 (MQ=255)
                   ccAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTc                 <  1:18906027/35‑1 (MQ=255)
                    cAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCt                >  1:18527265/1‑35 (MQ=255)
                    cAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCt                >  1:1304917/1‑35 (MQ=255)
                    cAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCt                <  1:1932024/35‑1 (MQ=255)
                     aGAGATTCGGCTTTTTTTTCTGCGGGGAGATTCtt               >  1:19738249/1‑35 (MQ=37)
                     aGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCtt               >  1:16576978/1‑35 (MQ=255)
                     aGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCtt               >  1:2341448/1‑35 (MQ=255)
                     aGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCtt               <  1:16240332/35‑1 (MQ=255)
                     aGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCtt               >  1:757906/1‑35 (MQ=255)
                      gAAATTCGGCTTTTTTTTCTGCGGGCAGATTCttt              >  1:15050068/1‑35 (MQ=255)
                      gAAATTCGGCTTTTTTTTCTGCGGGCAGATTCttt              >  1:6648300/1‑35 (MQ=255)
                      gAAATTCGGCTTTTTTTTCTGCGGGCAGATTCttt              <  1:16016198/35‑1 (MQ=255)
                      gAAATTCGGCTTTTTTTTCTGCGGGCAGATTCttt              <  1:13684079/35‑1 (MQ=255)
                       aaaTTCGGCTTTTTTTTCTGCGGGCATATTCTTTc             >  1:12515254/1‑35 (MQ=255)
                       aaaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTc             >  1:9481984/1‑35 (MQ=255)
                       aaaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTc             <  1:11212297/35‑1 (MQ=255)
                       aaaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTc             <  1:11588564/35‑1 (MQ=255)
                       aaaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTc             >  1:2050042/1‑35 (MQ=255)
                        aaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTcc            <  1:10427144/35‑1 (MQ=255)
                        aaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTcc            <  1:12123855/35‑1 (MQ=255)
                        aaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTcc            >  1:15616336/1‑35 (MQ=255)
                        aaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTcc            <  1:2917447/35‑1 (MQ=255)
                        aaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTcc            >  1:3395086/1‑35 (MQ=255)
                         aTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCg           >  1:15265470/1‑35 (MQ=255)
                         aTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCg           <  1:6234707/35‑1 (MQ=255)
                         aTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCg           <  1:4539015/35‑1 (MQ=255)
                          ttCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGa          >  1:18729442/1‑35 (MQ=255)
                           tcggcttTTTTTTCTGCGGGCAGATTCTTTCCGat         <  1:17330639‑M2/28‑1 (MQ=255)
                           tcggcttTTTTTTCTGCGGGCAGATTCTTTCCGat         <  1:7347305‑M2/28‑1 (MQ=255)
                           tcggcttTTTTTTCTGCGGGCAGATTCTTTCCGat         <  1:11884066‑M2/28‑1 (MQ=255)
                            cggcttTTTTTTCTGCGGGCAGATTCTTTCCGata        <  1:19219089‑M2/29‑1 (MQ=255)
                             ggcttTTTTTTCTGCGGGCAGATTCTTTCCGatat       >  1:15500899‑M2/6‑35 (MQ=255)
                             ggcttTTTTTTCTGCGGGCAGATTCTTTCCGatat       <  1:14981562‑M2/30‑1 (MQ=255)
                             ggcttTTTTTTCTGCGGGCAGATTCTTTCCGatat       <  1:5938333‑M2/30‑1 (MQ=255)
                              gcttTTTTTTCTGCGGGCAGATTCTTTCCGATATg      <  1:14622907‑M2/31‑1 (MQ=255)
                              gcttTTTTTTCTGCGGGCAGATTCTTTCCGATATg      <  1:1921095‑M2/31‑1 (MQ=255)
                              gcttTTTTTTCTGCGGGCAGATTCTTTCCGATATg      <  1:955887‑M2/31‑1 (MQ=255)
                               cttTTTTTTCTGCGGGCAGATTCTTTCCGATATGc     >  1:7734626‑M2/4‑35 (MQ=255)
                               cttTTTTTTCTGCGGGAAGATTCTTTCCGATATGc     <  1:2637820‑M2/32‑1 (MQ=255)
                                ttTTTTTTCTGCGGGCAGATTCTTTCCGATATGCa    <  1:13407954‑M2/33‑1 (MQ=255)
                                 tTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAc   >  1:8751531‑M2/2‑35 (MQ=255)
                                 tTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAc   >  1:6162695‑M2/2‑35 (MQ=255)
                                 tTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAc   <  1:1552041‑M2/34‑1 (MQ=255)
                                  ttttttCTGCGGGCAGATTCTTTCCGATATGCAcc  <  1:14985719/35‑1 (MQ=255)
                                  ttttttCTGCGGGCAGATTCTTTCCGATATGCAcc  <  1:362338/35‑1 (MQ=255)
                                  ttttttCTGCGGGCAGATTCTTTCCGATATGCAcc  <  1:4087232/35‑1 (MQ=255)
                                  |                                  
TTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACC  >  REL606/1414677‑1414745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.