Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 16,990 | IS150 (+) +3 bp | 100% | intergenic (‑32/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 16990 = | 0 (0.000) | 81 (0.790) | 38/48 | NT | 100% | intergenic (‑32/‑498) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
* | ? | REL606 | = 16992 | 0 (0.000) | 58 (0.560) | 29/48 | NT | 100% | intergenic (‑34/‑496) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region |
Only 100 of 181 total aligned reads displayed.
TATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGC > REL606/16958‑17026 | tataGGGGGCCTCGGGTTGATAGTAAAATATCACt > 1:10947537/1‑35 (MQ=255) tataGGGGGCCTCGGGTTGATAGTAAAATATCACt > 1:14496406/1‑35 (MQ=255) gtttaactgtccaactttttggggtcagtacaACt < 1:14056798‑M1/3‑1 (MQ=255) gtttaactgtcaaactttttggggtcagtacaACt > 1:15646708‑M1/33‑35 (MQ=255) tttaactgtccaactttttggggtcagtacaACTc > 1:9527921‑M1/32‑35 (MQ=255) tttaactgtccaactttttggggtcagtacaACTc > 1:6612182‑M1/32‑35 (MQ=255) tttaactgtccaactttttggggtcagtacaACTc < 1:4307335‑M1/4‑1 (MQ=255) tttaactgtccaactttttggggtcagtacaACTc < 1:17125584‑M1/4‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaACTCg > 1:17821865‑M1/31‑35 (MQ=255) taGGGGGCCTCGGGTTGATAGTAAAATATCACTtg > 1:8961776‑M1/1‑33 (MQ=255) taactgtccaactttttggggtcagtacaACTCgg > 1:8864062‑M1/30‑35 (MQ=255) taactgtccaactttttggggtcagtacaACTCgg > 1:19192595‑M1/30‑35 (MQ=255) aGGGGGCCTCGGGTTGATAGTAAAATATCACTtgt > 1:5052183‑M1/1‑32 (MQ=255) actgtccaactttttggggtcagtacaACTCgggg > 1:9843746‑M1/28‑35 (MQ=255) gggCCTCGGGTTGATAGTAAAATATCACTtgtact > 1:8353596‑M1/1‑29 (MQ=255) gggCCTCGGGTTGATAGTAAAATATCACTtgtact > 1:5993962‑M1/1‑29 (MQ=255) ctgtccaactttttggggtcagtacaACTCGGGGc < 1:16976552‑M1/9‑1 (MQ=255) ctgtccaactttttggggtcagtacaACTCGGGGc < 1:16740188‑M1/9‑1 (MQ=255) ctgtccaactttttggggtcagtacaACTCGGGGc > 1:5256587‑M1/27‑35 (MQ=255) tgtccaactttttggggtcagtacaACTCGGGGCt < 1:18080528‑M1/10‑1 (MQ=255) tgtccaactttttggggtcagtacaACTCGGGGCt < 1:1716522‑M1/10‑1 (MQ=255) tgtccaactttttggggtcagtacaACTCGGGGCt < 1:16010254‑M1/10‑1 (MQ=255) tgtccaactttttggggtcagtacaACTCGGGGCt > 1:271521‑M1/26‑35 (MQ=255) ggCCTCGGGTTGATAGTAAAATATCACTtgtactg < 1:3828421‑M1/35‑8 (MQ=255) ggCCTCGGGTTGATAGTAAAATATCACTtgtactg > 1:17143979‑M1/1‑28 (MQ=255) gtccaactttttggggtcagtacaACTCGGGGCtt > 1:14460477‑M1/25‑35 (MQ=255) gtccaactttttggggtcagtacaACTCGGGGCtt > 1:9649708‑M1/25‑35 (MQ=255) gtccaactttttggggtcagtacaACTCGGGGCtt > 1:17608611‑M1/25‑35 (MQ=255) gtccaactttttggggtcagtacaACTCGGGGCtt > 1:17250590‑M1/25‑35 (MQ=255) gtccaactttttggggtcagtacaACTCGGGGCtt > 1:15839655‑M1/25‑35 (MQ=255) gtccaactttttggggtcagtacaACTCGGGGCtt > 1:3354373‑M1/25‑35 (MQ=255) tccaactttttggggtcagtacaACTCGGGGCttt < 1:4087498‑M1/12‑1 (MQ=255) tccaactttttggggtcagtacaACTCGGGGCttt > 1:2587083‑M1/24‑35 (MQ=255) cgcggGTTGATAGTAAAATATCACTtgtactgcac < 1:17364000‑M1/33‑11 (MQ=255) ccaactttttggggtcagtacaACTCGGGGCtttt > 1:13874678‑M1/23‑35 (MQ=255) ccaactttttggggtcagtacaACTCGGGGCtttt < 1:7380613‑M1/13‑1 (MQ=255) ccaactttttggggtcagtacaACTCGGGGCtttt < 1:339824‑M1/13‑1 (MQ=255) ccaactttttggggtcagtacaACTCGGGGCtttt > 1:2883616‑M1/23‑35 (MQ=255) cTCGGGTTGATAGTAAAATATCACTtgtactgcac < 1:15139544‑M1/35‑11 (MQ=255) cTCGGGTTGATAGTAAAATATCACTtgtactgcac < 1:14841937‑M1/35‑11 (MQ=255) cGGGTTGATAGTAAAATATCACTtgtactgcaccc > 1:15724519‑M1/1‑23 (MQ=255) aactttttggggtcagtacaACTCGGGGCTTTtct > 1:19955870‑M1/21‑35 (MQ=255) aactttttggggtcagtacaACTCGGGGCTTTtct > 1:4764112‑M1/21‑35 (MQ=255) ctttttggggtcagtacaACTCGGGGCTTTTctct < 1:14304705‑M1/17‑1 (MQ=255) ctttttggggtcagtacaACTCGGGGCTTTTctct > 1:19131480‑M1/19‑35 (MQ=255) tttttggggtcagtacaACTCGGGGCTTTTCTCTa < 1:20383412‑M1/18‑1 (MQ=255) ttttggggtcagtacaACTCGGGGCTTTTCTCTAt < 1:11581269‑M1/19‑1 (MQ=255) ttttggggtcagtacaACTCGGGGCTTTTCTCTAt > 1:14785681‑M1/17‑35 (MQ=255) ttGATAGTAAAATATCACTtgtactgcacccattt < 1:18534574‑M1/35‑17 (MQ=255) ttGATAGTAAAATATCACTtgtactgcacccattt > 1:19606351‑M1/1‑19 (MQ=255) ttGATAGTAAAATATCACTtgtactgcacccattt < 1:13620988‑M1/35‑17 (MQ=255) tttggggtcagtacaACTCGGGGCTTTTCTCTATc < 1:16140927‑M1/20‑1 (MQ=255) tttggggtcagtacaACTCGGGGCTTTTCTCTATc > 1:5909647‑M1/16‑35 (MQ=255) tGATAGTAAAATATCACTtgtactgcacccatttt < 1:6690504‑M1/35‑18 (MQ=255) tttgggtcagtacaACTCGGGGCTTTTCTCTATCt < 1:10753225‑M1/21‑1 (MQ=255) ttggggtcagtacaACTCGGGGCTTTTCTCTATCt > 1:6185761‑M1/15‑35 (MQ=255) ttggggtcagtacaACTCGGGGCTTTTCTCTATCt > 1:6380233‑M1/15‑35 (MQ=255) ttggggtcagtacaACTCGGGGCTTTTCTCTATCt > 1:12181362‑M1/15‑35 (MQ=255) ttggggtcagtacaACTCGGGGCTTTTCTCTATCt > 1:8425105‑M1/15‑35 (MQ=255) ttggggtcagtacaACTCGGGGCTTTTCTCTATCt > 1:18705317‑M1/15‑35 (MQ=255) tggggtcagtacaACTCGGGGCTTTTCTCTATCTg > 1:18508548‑M1/14‑35 (MQ=255) tggggtcagtacaACTCGGGGCTTTTCTCTATCTg > 1:11507293‑M1/14‑35 (MQ=255) aTAGTAAAATATCACTtgtactgcacccattttgt < 1:8605442‑M1/35‑20 (MQ=255) aTAGTAAAATATCACTtgtactgcacccattttgt < 1:11299600‑M1/35‑20 (MQ=255) aTAGTAAAATATCACTtgtactgcacccattttgt < 1:11238373‑M1/35‑20 (MQ=255) ggggtcagtacaACTCGGGGCTTTTCTCTATCTGc > 1:6825455‑M1/13‑35 (MQ=255) aGTAAAATATCACTtgtactgcacccattttgttt > 1:11670229‑M1/1‑14 (MQ=255) aGTAAAATATCACTtgtactgcacccattttgttg > 1:17978715‑M1/1‑14 (MQ=255) tAAAATATCACTtgtactgcacccattttgttgga > 1:8021345‑M1/1‑12 (MQ=255) tAAAATATCACTtgtactgcacccattttgttgga > 1:963334‑M1/1‑12 (MQ=255) gtcagtacaACTCGGGGCTTTTCTCTATCTGCcgg < 1:2786296‑M1/26‑2 (MQ=255) aaaaTATCACTtgtactgcacccattttgttggac > 1:8669952‑M1/1‑11 (MQ=255) aaaaTATCACTtgtactgcacccattttgttggac > 1:10467269‑M1/1‑11 (MQ=255) aaaaTATCACTtgtactgcacccattttgttggac < 1:16589599‑M1/35‑25 (MQ=255) cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc > 1:10164638‑M1/8‑35 (MQ=255) cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc > 1:5260650‑M1/8‑35 (MQ=255) cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc < 1:15894172‑M1/28‑1 (MQ=255) cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc > 1:3448358‑M1/8‑35 (MQ=255) aaaTATCACTtgtactgcacccattttgttggacg > 1:6968977‑M1/1‑10 (MQ=255) aaaTATCACTtgtactgcacccattttgttggacg > 1:17462557‑M1/1‑10 (MQ=255) aaaTATCACTtgtactgcacccattttgttggacg > 1:8608878‑M1/1‑10 (MQ=255) aaaTATCACTtgtactgcacccattttgttggacg < 1:11176700‑M1/35‑26 (MQ=255) aaaTATCACTtgtactgcacccattttgttggacg > 1:9355197‑M1/1‑10 (MQ=255) agtacaACTCGGGGCTTTTCTCTATCTGCCGTTCa < 1:19304301‑M1/29‑1 (MQ=255) agtacaACTCGGGGCTTTTCTCTATCTGCCGTTCa < 1:13747648‑M1/29‑1 (MQ=255) agtacaACTCGGGGCTTTTCTCTATCTGCCGTTCa > 1:12968855‑M1/7‑35 (MQ=255) aaTATCACTtgtactgcacccattttgttggacga < 1:9186861‑M1/35‑27 (MQ=255) tacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGc < 1:19668581‑M1/31‑1 (MQ=255) atCACTtgtactgcacccattttgttggacgatga < 1:5610025‑M1/35‑30 (MQ=255) atCACTtgtactgcacccattttgttggacgatga < 1:11205532‑M1/35‑30 (MQ=255) atCACTtgtactgcacccattttgttggacgatga > 1:3006609‑M1/1‑6 (MQ=255) atCACTtgtactgcacccattttgttggacgatga < 1:11645009‑M1/35‑30 (MQ=255) tCACTtgtactgcacccattttgttggacgatgaa > 1:10125823‑M1/1‑5 (MQ=255) caACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTa > 1:369874‑M1/3‑35 (MQ=255) aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt > 1:828908/1‑35 (MQ=255) aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt < 1:19768282/35‑1 (MQ=255) aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt < 1:17816292/35‑1 (MQ=255) cTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATg < 1:4069433/35‑1 (MQ=255) tCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGc < 1:2495305/35‑1 (MQ=255) tCGGGGCTTTTCTCTATCTGCCGGTCAGCTAATGc > 1:13383927/1‑35 (MQ=255) | TATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGC > REL606/16958‑17026 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |