New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 449635 =24 (0.230)5 (0.070) 3/34 NT 11.1% coding (1050/1551 nt) ylaB conserved inner membrane protein
?REL606 = 3144237 63 (0.870)coding (314/1746 nt) dnaG DNA primase

TGATTATAAGAAGCGTCTTTGAAGATATGGGCGACTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/449675‑449635
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctgGGGCCGCTGCCTGCTTCAAATGGCACTTCAAGA  <  REL606/3144237‑3144205
                                                                          
TGATTATAAGAAGCGTCTTTGAAGATATGGGCGAC                                         >  1:9323084/1‑35
TGATTATAAGAAGCGTCTTTGAAGATATGGGCGAC                                         <  1:1785932/35‑1
TGATTATAAGAAGCGTCTTTGAAGATATGGGCGAC                                         >  1:7802411/1‑35
TGATTATAAGAAGCGTCTTTGAAGATATGGGCGAC                                         >  1:1121828/1‑35
TGATTATAAGAAGCGTCTTTGAAGATATGGGCGAC                                         <  1:1396555/35‑1
TGATTATAAGAAGCGTCTTTGAAGATATGGGCGAC                                         >  1:11538471/1‑35
TGATTATAAGAAGCGTCTTTGAAGATATGGGCGAC                                         >  1:3446479/1‑35
TGATTATAAGAAGCGTCTTTGAAGATATGGGCGAC                                         <  1:11779005/35‑1
 GATTATAAGAAGCGTCTTTGAATATATGGGCGACT                                        >  1:4585367/1‑35
 GATTATAAGAAGCGTCTTTGAAGATATGGGCGACT                                        >  1:16352649/1‑35
 GATTATAAGAAGCGTCTTTGAAGATATGGGCGACT                                        >  1:16476019/1‑35
 GATTATAAGAAGCGTCTTTGAAGATATGGGCGACT                                        >  1:18332755/1‑35
 GATTATAAGAAGCGTCTTTGAAGATATGGGCGACT                                        >  1:18577287/1‑35
 GATTATAAGAAGCGTCTTTGAAGATATGGGCGACT                                        <  1:4496900/35‑1
 GATTATAAGAAGCGTCTTTGAAGATATGGGCGACT                                        >  1:11416528/1‑35
 GATTATAAGAAGCGTCTTTGAAGATATGGGCGACT                                        <  1:11851937/35‑1
  ATTATAAGAAGCGTCTTTGAAGATATGGGCGACTG                                       <  1:16416018/35‑1
  ATTATAAGAAGCGTCTTTGAAGATATGGGCGACTG                                       <  1:6977860/35‑1
  ATTATAAGAAGCGTCTTTGAAGATATGGGCGACTG                                       <  1:14354388/35‑1
  ATTATAAGAAGCGTCTTTGAAGATATGGGCGACTG                                       >  1:13668564/1‑35
  ATTATAAGAAGCGTCTTTGAAGATATGGGCGACTG                                       >  1:1183650/1‑35
  ATTATAAGAAGCGTCTTTGAAGATATGGGCGACTG                                       <  1:11595031/35‑1
  ATTATAAGAAGCGTCTTTGAAGATATGGGCGACTG                                       <  1:12730193/35‑1
  ATTATAAGAAGCGTCTTTGAAGATATGGGCGACTG                                       <  1:12475030/35‑1
   TTATAAGAAGCGTCTTTGAATATATGGGCGACTGG                                      >  1:19510010/1‑35
   TTATAAGAAGCGTCTTTGAAGATATGGGCGACTGG                                      >  1:9504285/1‑35
   TTATAAGAAGCGTCTTTGAAGATATGGGCGACTGG                                      >  1:9173922/1‑35
   TTATAAGAAGCGTCTTTGAAGATATGGGCGACTGG                                      >  1:15538298/1‑35
   TTATAAGAAGCGTCTTTGAAGATATGGGCGACTGG                                      <  1:15345519/35‑1
   TTATAAGAAGCGTCTTTGAAGATATGGGCGACTGG                                      <  1:11149163/35‑1
   TTATAAGAAGCGTCTTTGAAGATATGGGCGACTGG                                      <  1:13483628/35‑1
   TTATAAGAAGCGTCTTTGAAGATATGGGCGACTGG                                      <  1:19661092/35‑1
    TATAGGAAGCGTCTTTGAAGATATGGGCGACTGGC                                     <  1:17455217/35‑1
    TATAAGAAGCGTCTTTGAAGATATGTGCGACTGGC                                     >  1:18098504/1‑35
    TATAAGAAGCGTCTTTGAAGATATGGGCGACTGGC                                     <  1:4960075/35‑1
    TATAAGAAGCGTCTTTGAAGATATGGGCGACTGGC                                     <  1:16476103/35‑1
    TATAAGAAGCGTCTTTGAAGATATGGGCGACTGGC                                     >  1:2533808/1‑35
    TATAAGAAGCGTCTTTGAAGATATGGGCGACTGGC                                     <  1:10431457/35‑1
     ATAAGAAGCGTCTTTGAAGATATGGGCGACTGGCT                                    <  1:19583964/35‑1
     ATAAGAAGCGTCTTTGAAGATATGGGCGACTGGCT                                    <  1:11317195/35‑1
     ATAAGAAGCGTCTTTGAAGATATGGGCGACTGGCT                                    <  1:4445131/35‑1
     ATAAGAAGCGTCTTTGAAGATATGGGCGACTGGCT                                    <  1:12096469/35‑1
     ATAAGAAGCGTCTTTGAAGATATGGGCGACTGGCT                                    >  1:13987795/1‑35
     ATAAGAAGCGTCTTTGAAGATATGGGCGACTGGCT                                    <  1:17430382/35‑1
     ATAAGAAGCGTCTTTGAAGATATGGGCGACTGGCT                                    >  1:11159657/1‑35
      TAAGAAGCGTCTTTGAAGATATGGGCGACTGGCTG                                   <  1:13734428/35‑1
      TAAGAAGCGTCTTTGAAGATATGGGCGACTGGCTG                                   >  1:18209632/1‑35
      TAAGAAGCGTCTTTGAAGATATGGGCGACTGGCTG                                   <  1:15068927/35‑1
      TAAGAAGCGTCTTTGAAGATATGGGCGACTGGCTG                                   <  1:8072926/35‑1
      TAAGAAGCGTCTTTGAAGATATGGGCGACTGGCTG                                   >  1:13141474/1‑35
      TAAGAAGCGTCTTTGAAGATATGGGCGACTGGCTG                                   >  1:84942/1‑35
      TAAGAAGCGTCTTTGAAGATATGGGCGACTGGCTG                                   <  1:1567025/35‑1
      TAAGAAGCGTCTTTGAAGATATGGGCGACTGGCTG                                   >  1:3027859/1‑35
      TAAGAAGCGTCTTTGAAGATATGGGCGACTGGCTG                                   <  1:3216180/35‑1
       AAGAAGCGTCTTTGAAGATATGGGCGACTGGCTGG                                  >  1:461702/1‑35
       AAGAAGCGTCTTTGAAGATATGGGCGACTGGCTGG                                  >  1:1978645/1‑35
       AAGAAGCGTCTTTGAAGATATGGGCGACTGGCTGG                                  >  1:4635681/1‑35
       AAGAAGCGTCTTTGAAGATATGGGCGACTGGCTGG                                  >  1:7309435/1‑35
       AAGAAGCGTCTTTGAAGATATGGGCGACTGGCTGG                                  >  1:14590627/1‑35
       AAGAAGCGTCTTTGAAGATATGGGCGACTGGCTGG                                  >  1:16607884/1‑35
        AGAAGCGTCTTTGAAGATATGGGCGACTGGCTGGG                                 >  1:6633266/1‑35
        AGAAGCGTCTTTGAAGATATGGGCGACTGGCTGGG                                 >  1:15629727/1‑35
        AGAAGCGTCTTTGAAGATATGGGCGACTGGCTGGG                                 >  1:11045371/1‑35
        AGAAGCGTCTTTGAAGATATGGGCGACTGGCTGGG                                 >  1:9396718/1‑35
         GAAGCGTCTTTGAAGATATGGGCGACTGGCTGGGG                                >  1:2607843/1‑35
          AAGCGTCTTTGAAGATATGGGCGACTGGCTGGGGg                               >  1:9966178/1‑34
          AAGCGTCTTTGAAGATATGGGCGACTGGCTGGGGg                               >  1:16133215/1‑34
          AAGCGTCTTTGAAGATATGGGCGACTGGCTGGGGC                               >  1:4056725/1‑35
          AAGCGTCTTTGAAGATATGGGCGACTGGCTGGGGC                               >  1:11147058/1‑35
          AAGCGTCTTTGAAGATATGGGCGACTGGCTGGGGC                               >  1:17324112/1‑35
           AGCGTCTTTGAAGATATGGGCGACTGGCTGGGGgg                              >  1:17247670/1‑33
           AGCGTCTTTGAAGATATGGGCGACTGGCTGGGGgc                              >  1:17817003/1‑33
            GCGTCTTTGAAGATATGGGCGACTGGCTGGGGGCG                             >  1:18349036/1‑35
             CGTCTTTGAAGATATGGGCGACTGGCTGGGGGCGg                            >  1:162656/1‑34
             CGTCTTTGAAGATATGGGCGACTGGCTGGGGCCGC                            >  1:6691224/1‑35
              GTCTTTGAAGATATGGGCGACTGGCTGGGGCCGCc                           >  1:13004132/1‑34
                 TTTGAAGATATGGGCGACTGGCTGGGGCCGCGGCC                        >  1:6606941/1‑35
                                  CTGGCTGGGGCCGCTGCCTGCTTCAAATGGCACTT       <  1:7795776/35‑1
                                  CTGGCTGGGGCCGCTGCCTGCTTCAAATGGCACTT       >  1:14692364/1‑35
                                  CTGGCTGGGGCCGCTGCCTGCTTCAAATGGCACTT       <  1:8251241/35‑1
                                  CTGGCTGGGGCCGCTGCCTGCTTCAAATGGCACTT       <  1:11627382/35‑1
                                   TGGCTGGGGCCGCTGCCTGCTTCAAATGGCACTTC      <  1:8017071/35‑1
                                   TGGCTGGGGCCGCTGCCTGCTTCAAATGGCACTTC      <  1:2639158/35‑1
                                     gcgGGGGCCGCTGCCTGCTTCAAATGGCACTTCAA    <  1:16100794/32‑1
                                     GCTGGGGCCGCTGCCTGCTTCAAATGGCACTTCAA    >  1:20518156/1‑35
                                     GCTGGGGCCGCTGCCTGCTTCAAATGGCACTTCAA    >  1:2960669/1‑35
                                      CTGGGGCCGCTGCCTGCTTCAAATGGCACTTCAAG   >  1:6046492/1‑35
                                      CTGGGGCCGCTGCCTGCTTCAAATGGCACTTCAAG   <  1:13429530/35‑1
                                       TGGGGCCGCTGCCTGCTTCAAATGGCACTTCAAta  >  1:19549700/1‑33
                                       TGGGGCCGCTGCCTGCTTCAAATGGCACTTCAAGA  >  1:18721836/1‑35
                                       TGGGGCCGCTGCCTGCTTCAAATGGCACTTCAAGA  >  1:11458835/1‑35
                                                                          
TGATTATAAGAAGCGTCTTTGAAGATATGGGCGACTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/449675‑449635
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctgGGGCCGCTGCCTGCTTCAAATGGCACTTCAAGA  <  REL606/3144237‑3144205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.