New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 68792162 (0.600)12 (0.130) 4/44 NT 12.4% coding (1883/1947 nt) nagE fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA components
?REL606 970674 = 112 (1.190)intergenic (‑27/+28) pflB/focA pyruvate formate lyase I/formate transporter

GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/687886‑687921
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttTTTTATTTACTGCGTACTTCGACAACCATTAATG  >  REL606/970674‑970707
                                                                      
GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCT                                     <  1:11449033/35‑1
GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCT                                     <  1:664615/35‑1
GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCT                                     <  1:1588403/35‑1
GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCT                                     <  1:12690157/35‑1
GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCT                                     >  1:642426/1‑35
GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCT                                     <  1:14864143/35‑1
 GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT                                    >  1:4865977/1‑35
 GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT                                    <  1:17916703/35‑1
 GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT                                    <  1:5045756/35‑1
 GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT                                    <  1:1558219/35‑1
 GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT                                    <  1:6171197/35‑1
 GTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT                                    <  1:6479535/35‑1
  TGGTTTGCAGCAATATCGACGATTTCAGTGGCTTT                                   >  1:16440046/1‑35
  TGGTTTGCAGCAATATCGACGATTTCAGTGGCTTT                                   >  1:16818460/1‑35
  TGGTTTGCAGCAATATCGACGATTTCAGTGGCTTT                                   >  1:7775530/1‑35
   GGTTTGCAGCAATATCGACGATTTCAGTGGCTTcg                                  >  1:1055615/1‑33
   GGTTTGCAGCAATATCGACGATTTCAGTGGCTTTT                                  >  1:14865835/1‑35
   GGTTTGCAGCAATATCGACGATTTCAGTGGCTTTT                                  >  1:13833834/1‑35
   GGTTTGCAGCAATATCGACGATTTCAGTGGCTTTT                                  >  1:1261750/1‑35
    GTTTGCAGCAATATCGACGATTTCAGTGGCTTTat                                 >  1:19049115/1‑33
    GTTTGCAGCAATATCGACGATTTCAGTGGCTTTTT                                 >  1:7092271/1‑35
     TTTGCAGCAATATCGACGATTTCAGTGGCTTTTTT                                >  1:19177186/1‑35
     TTTGCAGCAATATCGACGATTTCAGTGGCTTTTTT                                >  1:20163532/1‑35
      TTGCAGCAATATCGACGATTTCAGTGGCTTTTTTA                               >  1:10681714/1‑35
       TGCAGCAATATCGACGATTTCAGTGGCTTTTTTAT                              >  1:7836629/1‑35
        GCAGCAATATCGACGATTTCAGTGGCTTTATTATT                             >  1:18974411/1‑35
         CAGCAATATCGACGATTTCAGTGGCTTTTTTATTT                            >  1:4856712/1‑35
         CAGCAATATCGACGATTTCAGTGGCTTTTTCATTa                            >  1:14518547/1‑34
          AGCAATATCGACGATTTCAGTGGCTTTTTTATTaa                           >  1:19477626/1‑33
          AGCAATATCGACGATTTCAGTGGCTTTTTTATTTA                           >  1:14334328/1‑35
          AGCAATATCGACGATTTCAGTGGCTTTTTTATTTA                           >  1:13463554/1‑35
          AGCAATATCGACGATTTCAGTGGCTTTTTTATTTA                           >  1:8357249/1‑35
          AGCAATATCGACGATTTCAGTGGCTTTTTCATTTA                           >  1:6399151/1‑35
            CAATATCGACGATTTCAGTGGCTTTTTTATTTAaa                         >  1:11968485/1‑33
            CAATATCGACGATTTCAGTGGCTTTTTTATTTAaa                         >  1:8214687/1‑33
             AATATCGACGATTTCAGTGGCTTTTTTATTTAatc                        >  1:197555/1‑32
                                   TTTTTATTTACTGCGTACTTCGACAACCATTAATG  >  1:15786843/1‑35
                                   TTTTTATTTACTGCGTACTTCGACAACCATTAATG  >  1:3280050/1‑35
                                                                      
GGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/687886‑687921
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttTTTTATTTACTGCGTACTTCGACAACCATTAATG  >  REL606/970674‑970707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.