New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 418706983 (0.810)13 (0.170) 5/36 NT 15.8% coding (49/1590 nt) purH bifunctionalphosphoribosylaminoimidazolecarboxam ide formyltransferase/IMP cyclohydrolase
?REL606 = 4402608 76 (0.990)intergenic (+67/+62) sgaE/yjfY L‑ribulose 5‑phosphate 4‑epimerase/hypothetical protein

Only 100 of 177 total aligned reads displayed.

GAAAGTGCCTGGGCGAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGA  >  REL606/4187035‑4187103
                                  |                                  
gAAAGTGCCTGGGCGAATTCGACGATACCGGCTTT                                    >  1:17392109‑M1/1‑35 (MQ=255)
gAAAGTGCCTGGGCGAATTCGACGATACCGGCTTT                                    >  1:18386881‑M1/1‑35 (MQ=255)
gAAAGTGCCTGGGCGAATTCGACGATACCGGCTTT                                    <  1:7870730‑M1/35‑1 (MQ=255)
gAAAGTGCCTGGGCGAATTCGACGATACCGGCTTT                                    >  1:6435753‑M1/1‑35 (MQ=255)
gAAAGTGCCTGGGCGAATTCGACGATACCGGCTTT                                    >  1:6414047‑M1/1‑35 (MQ=255)
 aaaGTGCCTGGGCGAATTCGACGATACCGGCTTTt                                   >  1:5751959‑M1/1‑34 (MQ=255)
 aaaGTGCCTGGGCGAATTCGACGATACCGGCTTTg                                   <  1:1099466/35‑1 (MQ=255)
 aaaGTGCCTGGGCGAATTCGACGATACCGGCTTTg                                   <  1:11618127/35‑1 (MQ=255)
  aaGTGCCTGGGCGAATTCGACGATACCGGCTTTtt                                  >  1:15855480‑M1/1‑33 (MQ=255)
  aaGTGCCTGGGCGAATTCGACGATACCGGCTTTtt                                  >  1:19663981‑M1/1‑33 (MQ=255)
  aaGTGCCTGGGCGAATTCGACGATACCGGCTTTGt                                  <  1:7097568/35‑1 (MQ=255)
  aaGTGCCTGGGCGAATTCGACGATACCGGCTTTGt                                  <  1:12587766/35‑1 (MQ=255)
  aaGTGCCTGGGCGAATTCGACGATACCGGCTTTGt                                  <  1:1249391/35‑1 (MQ=255)
   aGTGCCTGGGCGAATTCGACGATACCGGCTTTttt                                 >  1:6489228‑M1/1‑32 (MQ=255)
   aGTGCCTGGGCGAATTCGACGATACCGGCTTTGTc                                 <  1:13090764/35‑1 (MQ=255)
   aGTGCCTGGGCGAATTCGACGATACCGGCTTTGTc                                 <  1:2425446/35‑1 (MQ=255)
     tGCCTGGGCGAATTCGACGATACCGGCTTTGTCAg                               <  1:3956171/35‑1 (MQ=255)
     tGCCTGGGCGAATTCGACGATACCGGCTTTGTCAg                               <  1:15156657/35‑1 (MQ=255)
     tGCCTGGGCGAATTCGACGATACCGGCTTTGTCAg                               <  1:15074053/35‑1 (MQ=255)
     tGCCTGGGCGAATTCGACGATACCGGCTTTGTCAg                               <  1:9500293/35‑1 (MQ=255)
     tGCCTGGGCGAATTCGACGATACCGGCTTTGTCAg                               <  1:20311810/35‑1 (MQ=255)
     tGCCTGGGCGAATTCGACGATACAGGCTTTtttta                               >  1:3426095‑M1/1‑30 (MQ=255)
      gCCTGGGCGAATTCGACGATACCGGCTTTtttaca                              >  1:7788883‑M1/1‑29 (MQ=255)
      gCCTGGGCGAATTCGACGATACCGGCTTTGTCAGa                              <  1:6751291/35‑1 (MQ=255)
       ccTGGGCGAATTCGACGATACCGGCTTTtttagaa                             >  1:6114756‑M1/1‑28 (MQ=255)
       ccTGGGCGAATTCGACGATACCGGCTTTGTAAGaa                             <  1:14683196/35‑1 (MQ=255)
        cTGGGCGAATTCGACGATACCGGCTTTttttgaaa                            >  1:12905056‑M1/1‑27 (MQ=255)
        cTGGGCGAATTCGACGATACCGGCTTTGTCAGaaa                            <  1:8764839/35‑1 (MQ=255)
         tGGGCGAATTCGACGATACCGGCTTTtttagaaac                           >  1:13407386‑M1/1‑26 (MQ=255)
         tGGGCGAATTCGACGATACCGGATTTGTCAGAAac                           <  1:17100617/35‑1 (MQ=255)
         tGGGCAAATTCGGCGATACCGGCTTTGTCAGAAac                           <  1:1946828/35‑1 (MQ=25)
          gggCGAATTCGACGATACCGGCTTTGTCAGAAaca                          <  1:737939/35‑1 (MQ=255)
          gggCGAATTCGACGATACCGGCTTTGTCAGAAaca                          <  1:16123721/35‑1 (MQ=255)
           ggCGAATTCGACGATACCGGCTTTtttcgaaaaaa                         >  1:10131480‑M1/1‑24 (MQ=255)
           ggCGAATTCGACGATACCGGCTTTtttagaaaaaa                         >  1:19478113‑M1/1‑24 (MQ=255)
           ggCGAATTCGACGATACCGGCTTTGTCAGAAacac                         <  1:6810485/35‑1 (MQ=255)
            gCGAATTCGACGATACCGGCTTTTTCAGAAacaat                        >  1:20337871/1‑33 (MQ=37)
            gCGAATTCGACGATACCGGCTTTGTCAGAAACACt                        <  1:7527645/35‑1 (MQ=255)
            gCGAATTCGACGATACCGGCTTTGTCAGAAACACt                        <  1:19109260/35‑1 (MQ=255)
             cGAATTCGACGATACCGGCTTTGTCAGAAACACTg                       <  1:7518215/35‑1 (MQ=255)
             cGAATTCGAAGATACCGGCTTTGTCAGAAACACTg                       <  1:81945/35‑1 (MQ=255)
              gAATTCGACGATACCGGCTTTttttgaaaaactga                      >  1:20597282‑M1/1‑21 (MQ=255)
              gAATTCGACGATACCGGCTTTttttgaaaaactca                      >  1:17985605‑M1/1‑21 (MQ=255)
              gAATTCGACGATACCGGCTTTGTCAGAAACACTGa                      <  1:17102882/35‑1 (MQ=255)
              gAATTCGACGATACCGGCTTTGTCAGAAACACTGa                      <  1:10097483/35‑1 (MQ=255)
                aTTCGACGATACCGGCTTTGTCAGAAACACTGAGc                    <  1:3648979/35‑1 (MQ=255)
                 ttCGACGATACCGGCTTTTTTCGAAAAACCGAGCa                   >  1:14377118/1‑35 (MQ=12)
                  tagacgaTACCGGCTTTGTCAGAAACACTGAGCag                  <  1:15705983/33‑1 (MQ=255)
                  tCGACGATACCGGCTTTGTCAGAAACACTGAGCag                  <  1:7586567/35‑1 (MQ=255)
                   cgacgaTGCCTGCTTTGTCAGAAACACTGAGCaga                 <  1:8550087/35‑1 (MQ=37)
                   cgacgaTACCGGCTTTGTCAGAAACACTGAGCaga                 <  1:4857222/35‑1 (MQ=255)
                   cgacgaTACCGGCTTTGTCAGAAACACTGAGCaga                 <  1:8674775/35‑1 (MQ=255)
                   cgacgaTACCGGCTTTGTCAGAAACACTGAGCaga                 <  1:17745700/35‑1 (MQ=255)
                   cgacgaTACCGGCTTTGTCAGAAACACTGAGCaga                 <  1:18999515/35‑1 (MQ=255)
                     acgaTACCGGCTTTGTCAGAAACACTGAGCAGAgc               <  1:11278213/35‑1 (MQ=255)
                     acgaTACCGGCTTTGTCAGAAACACTGAGCAGAgc               <  1:3077700/35‑1 (MQ=255)
                     acgaTACCGGCTTTGTCAGAAACACTGAGCAGAgc               <  1:12177338/35‑1 (MQ=255)
                     acgaTACCGGCTTTGTCAGAAACACTGAGCAGAgc               <  1:14017179/35‑1 (MQ=255)
                      cnaNACCGGCTTTGTCAGAAACACTGAGCAGAgcn              <  1:16383052/35‑1 (MQ=255)
                      cgaTACCGTCTTTGTCAGAAACACTGAGCAGAgct              >  1:11291394/1‑34 (MQ=255)
                       gaTACCGGCTTTGTCAGAAACACTGAGCAGAgcgc             <  1:12091985/35‑1 (MQ=255)
                       gaTACCGGCTTTGTCAGAAACACTGAGCAGAgcgc             <  1:10683611/35‑1 (MQ=255)
                       gaTACCGGCTTTGTCAGAAACACTGAGCAGAgcgc             <  1:14244416/35‑1 (MQ=255)
                          aCCGGCTTTGTCAGAAACACTGAGCAGAGCgcggc          <  1:12183083/35‑1 (MQ=255)
                          aCCGGCTTTGTCAGAAACACTGAGCAGAGCgcggc          <  1:490282/35‑1 (MQ=255)
                           ccGGCTTTGTCAGAAACACTGAGCAGAGCgcggcg         <  1:13487697/35‑1 (MQ=255)
                           ccGGCTTTGTCAGAAACACTGAGCAGAGCgcggcg         <  1:10754888/35‑1 (MQ=255)
                            cGGCTTTGTCAGAAACACTGAGCAGAGCGcggcgg        >  1:7619650/1‑35 (MQ=255)
                            cGGCTTTGTCAGAAACACTGAGCAGAGCGcggcgg        <  1:6540018/35‑1 (MQ=255)
                            cGGCTTTGTCAGAAACACTGAGCAGAGCGcggcgg        >  1:5623445/1‑35 (MQ=255)
                             ggCTTTttttgaaaaacggctgcggaattagacca       >  1:4648186‑M1/1‑6 (MQ=255)
                             ggCTTTttttgaaaaacggctgcggaattagacca       <  1:1924920‑M1/35‑30 (MQ=255)
                             ggCTTTttttgaaaaacggccgcggaattagacca       >  1:5410087‑M1/1‑6 (MQ=255)
                             ggCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGa       <  1:10838518/35‑1 (MQ=255)
                             ggCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGa       <  1:7672663/35‑1 (MQ=255)
                             ggCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGa       <  1:1661568/35‑1 (MQ=255)
                             ggCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGa       <  1:19333966/35‑1 (MQ=255)
                             ggCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGa       >  1:19824964/1‑35 (MQ=255)
                             ggCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGa       >  1:3499196/1‑35 (MQ=255)
                             ggCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGa       >  1:6052602/1‑35 (MQ=255)
                             agCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGa       <  1:15476068/34‑1 (MQ=255)
                              gCTTTttttgaaaaacggctgcggaattagaccag      <  1:5822437‑M1/35‑31 (MQ=255)
                              gCTTTttttgaaaaacggctgcggaattagaccag      <  1:19076849‑M1/35‑31 (MQ=255)
                              gCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGAc      <  1:19057479/35‑1 (MQ=255)
                               cTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACt     <  1:12323328/35‑1 (MQ=255)
                                tttttttgaaaaacggctgcggaattagaccagtt    <  1:14352927‑M1/35‑33 (MQ=255)
                                tttttttgaaaaacggctgcggaattagaccagtt    <  1:3237325‑M1/35‑33 (MQ=255)
                                tttGTCAGAAACACTGAGCAGAGCGCGGCGGACTg    >  1:415434/1‑35 (MQ=255)
                                tttGTCAGAAACACTGAGCAGAGCGCGGCGGACTg    >  1:15337492/1‑35 (MQ=255)
                                tttGTCAGAAACACTGAGCAGAGCGCGGCGGACTg    <  1:10801672/35‑1 (MQ=255)
                                tttGTCAGAAACACTGAGCAGAGCGCGGCGGACTg    <  1:9316604/35‑1 (MQ=255)
                                 ttttttgaaaaacggctgcggaattagaccagtta   <  1:15890470‑M1/35‑34 (MQ=255)
                                 ttttttgaaaaacggctgcggaattagaccagtta   <  1:18424991‑M1/35‑34 (MQ=255)
                                 ttGTCAGAAACACTGAGCAGAGCGCGGCGGACTgg   <  1:13671688/35‑1 (MQ=255)
                                 ttGTCAGAAACACTGAGCAGAGCGCGGCGGACTgg   <  1:11694696/35‑1 (MQ=255)
                                  tttttgaaaaacggctgcggaattagaccagttat  >  1:10444375‑M1/1‑1 (MQ=255)
                                  tttttgaaaaacggctgcggaattagaccagttat  <  1:9854235‑M1/35‑35 (MQ=255)
                                  tGTCAGAAACACTGAGCAGAGCGCGGCGGACTGga  >  1:4574149/1‑35 (MQ=255)
                                  tGTCAGAAACACTGAGCAGAGCGCGGCGGACTGga  <  1:13895122/35‑1 (MQ=255)
                                  tGTCAGAAACACTGAGCAGAGCGCGGCGGACTGga  <  1:5457476/35‑1 (MQ=255)
                                  |                                  
GAAAGTGCCTGGGCGAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGA  >  REL606/4187035‑4187103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.