Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,183,348 | G→A | 32.6% | G80S (GGC→AGC) | yqjK → | hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,183,348 | 0 | G→A | 32.6% | 70.7 ‑0.6 ‑0.1 | 89 | G80S (GGC→AGC) | yqjK | hypothetical protein |
Reads supporting (aligned to +/- strand): new base (4/25): ref base (12/48): total (16/73) | ||||||||||
Fisher's exact test strand distribution p-value = 5.67e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.62e-01 |
Only 100 of 106 total aligned reads displayed.
TAATATGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGAC > REL606/3183314‑3183382 | tAATATGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTg < 1:10745931/35‑1 (MQ=255) tAATATGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTg < 1:2015684/35‑1 (MQ=255) tAATATGCTGGTCCGCTGGGCAAGACGC‑GG‑TTTTg < 1:4825314/35‑1 (MQ=255) aaTATGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTgg < 1:159491/35‑1 (MQ=255) gtatGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGc < 1:14270836/34‑1 (MQ=255) tatGCTGGTCCGCTGGGCCAGACGCGGG‑TTTTggg > 1:14621058/1‑34 (MQ=21) tatGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCg < 1:8350863/35‑1 (MQ=255) tatGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCg < 1:12537868/35‑1 (MQ=255) tatGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTAGCg < 1:15507068/35‑1 (MQ=255) gtGCTGGTCCGCTGGGCCAGACGC‑GG‑GTTTTGCgg > 1:1116865/2‑34 (MQ=21) atGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGt < 1:7445360/35‑1 (MQ=255) atGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGt < 1:1249704/35‑1 (MQ=255) atGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGt < 1:14070393/35‑1 (MQ=255) atGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGt < 1:6965298/35‑1 (MQ=255) tGCTGGTCCGCTGGGCCAGACGC‑GGCTATTGGCGt > 1:6909050/1‑35 (MQ=18) tGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGTa < 1:12106068/35‑1 (MQ=255) tGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGTa < 1:3439423/35‑1 (MQ=255) tGCTGGTCCGCTGGGCCAGACGC‑GG‑GTTTTGCgga > 1:11697890/1‑33 (MQ=21) gCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGTAt < 1:13388297/35‑1 (MQ=255) cTGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGTATg < 1:20240096/35‑1 (MQ=255) cTGGTCCGCTGGGCCAGACGC‑GG‑TTTTAGCGTATg < 1:19770096/35‑1 (MQ=255) cTGGTCCGCTGGGCCAGACGC‑GG‑GGTTTGGGTATg > 1:17714816/1‑35 (MQ=16) tGGTCCGCTGGGCCAGACGCGGG‑TTTTGGGGttgg > 1:20127238/1‑32 (MQ=16) tGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGTATgg < 1:17830352/35‑1 (MQ=255) tGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGTATgg < 1:17782168/35‑1 (MQ=255) tGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGTATgg < 1:16496004/35‑1 (MQ=255) tGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGTATgg < 1:16003448/35‑1 (MQ=255) tGGTCCGCTGGGCCAGACGC‑GG‑GTTTTGGGTGTgg > 1:854996/1‑35 (MQ=16) ggTCAGCTGGGCCAGACGC‑GG‑TTTTAGCGTATGGa < 1:5635186/35‑1 (MQ=37) gTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGTATGGAg < 1:11348/35‑1 (MQ=255) tcagCTGGGCCAGACGC‑GG‑TTTTGGCGTATGGAgc < 1:16900796/32‑1 (MQ=255) tCCGCTGGGCCAGACGC‑GG‑TTTTGGCGTATGGAgc < 1:7773906/35‑1 (MQ=255) tCCGCTGGGCCAGACGC‑GG‑TTTTAGCGTATGGAgc < 1:19110097/35‑1 (MQ=255) tCCGCTGGGCCAGACGC‑GG‑TTTTAGCGTATGGAgc < 1:5996519/35‑1 (MQ=255) tCCGCTGGGCCAGACGC‑GG‑TTTTAGCGTATGGAgc < 1:18072449/35‑1 (MQ=255) tCCGCTGGGCCAGACGC‑GG‑GTTTTGGGGATggggg > 1:16257619/1‑32 (MQ=12) ccGCTGGGCCAGACGC‑GG‑TTTTGGCGTATGGAgcg < 1:11897593/35‑1 (MQ=255) cGCTGGGCCAGACGC‑GG‑TTTTGGCGTATGGAgcgc < 1:1576323/35‑1 (MQ=255) cGCTGGGCCAGACGC‑GG‑GTTTTGCGTATGGGgcgc > 1:1987806/1‑35 (MQ=25) gCTGGGCCAGACGC‑GG‑TTTTGGCGTATGGAGCGcc < 1:5618176/35‑1 (MQ=255) gCTGGGCCAGACGC‑GG‑TTTTAGCGTATGGAGCGcc < 1:16365913/35‑1 (MQ=255) cTGGGCCAGACGC‑GG‑TTTTGGCGTATGGAGCGCCt < 1:18178555/35‑1 (MQ=255) cTGGGCCAGACGC‑GG‑TTTTAGCGTATGGAGCGCCt < 1:19228166/35‑1 (MQ=255) tGGGCCAGACGC‑GG‑TTTTGGCGTATGGAGCGCCTg < 1:4553197/35‑1 (MQ=255) tGGGCCAGACGC‑GG‑TTTTAGCGTATGGAGCGCCTg < 1:6895846/35‑1 (MQ=255) ggtccAGACGC‑GG‑TTTTGGCGTATGGAGCGCCTgg < 1:11707846/32‑1 (MQ=255) gggCGAGACGC‑GG‑TTTTGGCGTATGGAGCGCCTgg < 1:3260692/35‑1 (MQ=255) gggCCAGACGC‑GG‑TTTTGGCGTATGGAGCGCCTgg < 1:20352675/35‑1 (MQ=255) gggCCAGACGC‑GG‑TTTTAGCGTATGGAGCGCCTgg < 1:10860669/35‑1 (MQ=255) ggCCAGACGC‑GG‑TTTTGGCGTATGGAGCGCCTGGc < 1:10660709/35‑1 (MQ=255) ccAGACGC‑GG‑TTTTGGCGTATGGAGCGCCTGGCGt < 1:898166/35‑1 (MQ=255) ccAGACGC‑GG‑TTTTGGCGTATGGAGCGCCTGGCGt < 1:20152792/35‑1 (MQ=255) ccAGACGC‑GG‑TTTTAGCGTATGGAGCGCCTGGCGt < 1:20371362/35‑1 (MQ=255) ccAGACGC‑GG‑TTTTAGCGTATGGAGCGCCTGGCGt < 1:2480825/35‑1 (MQ=255) ccAGACGC‑GG‑TTTTAGCGTATGGAGCGCCTGGCGt < 1:3869624/35‑1 (MQ=255) cAGACGC‑GG‑TTTTGGCGTATGGAGCGCCTGGCGTc < 1:8958750/35‑1 (MQ=255) aGACGC‑GG‑TTTTAGCGTATGGAGCGCCTGGCGTCt < 1:10858888/35‑1 (MQ=255) gACGC‑GG‑TTTTGGCGTATGGAGCGCCTGGCGTCTg < 1:18486524/35‑1 (MQ=255) gACGC‑GG‑TTTTGGCGTATGGAGCGCCTGGCGTCTg < 1:15508924/35‑1 (MQ=255) gACGC‑GG‑TTTTGGCGTATGGAGCGCCTGGCGTCTg < 1:20588376/35‑1 (MQ=255) gACGC‑GG‑TTTTAGCGTATGGAGCGCCTGGCGTCTg < 1:19712612/35‑1 (MQ=255) gACGC‑GG‑TTTTAGCGTATGGAGCGCCTGGCGTCTg < 1:7417235/35‑1 (MQ=255) gcgc‑gG‑TTTTAGCGTATGGAGCGCCTGGCGTCTgg < 1:18269675/34‑1 (MQ=255) aCGC‑GG‑TTTTGGCGTATGGAGCGCCTGGCGTCTgg > 1:19870545/1‑35 (MQ=255) aCGC‑GG‑TTTTAGCGTATGGAGCGCCTGGCGTCTgg < 1:8625080/35‑1 (MQ=255) aCGC‑GG‑TTTTAGCGTATGGAGCGCCTGGCGTCTgg < 1:9461796/35‑1 (MQ=255) aCGC‑GG‑TTTTAGCGTATGGAGCGCCTGGCGTCTgg > 1:1416461/1‑35 (MQ=255) cgc‑gG‑TTTTGGCGTATGGAGCGCCTGGCGTCTGGt < 1:3400389/35‑1 (MQ=255) cgc‑gG‑TTTTGGCGTATGGAGCGCCTGGCGTCTGGt > 1:17637056/1‑35 (MQ=255) cgc‑gG‑TTTTGGCGTATGGAGCGCCTGGCGTCTGGt < 1:8685938/35‑1 (MQ=255) cgc‑gG‑TTTTGGCGTATGGAGCGCCTGGCGTCTGGt < 1:12323617/35‑1 (MQ=255) cgc‑gG‑TTTTAGCGTATGGAGCGCCTGGCGTCTGGt < 1:5250198/35‑1 (MQ=255) gc‑gG‑TTTTGGCGTATGGAGCGCCTGGCGTCTGGtt > 1:1762714/1‑35 (MQ=255) tg‑TTTTAGCGTATGGAGCGCCTGGCGTCTGGTTaa < 1:1350393/34‑1 (MQ=255) gg‑TTTTGGCGTATGGAGCGCCTGGCGTCTGGTTaa > 1:3705861/1‑35 (MQ=255) gg‑TTTTAGCGTATGGAGCGCCTGGCGTCTGGTTaa < 1:14551050/35‑1 (MQ=255) gg‑TTTTAGCGTATGGAGCGCCTGGCGTCTGGTTaa > 1:19696644/1‑35 (MQ=255) gg‑TTTTAGCGTATGGAGCGCCTGGCGTCTGGTTaa < 1:16967565/35‑1 (MQ=255) gg‑TTTTAGCGTATGGAGCGCCTGGCGTCTGGTTaa > 1:5645391/1‑35 (MQ=255) g‑TTTTGGCGTATGGAGCGCCTGGCGTCTGGTTaaa > 1:3927372/1‑35 (MQ=255) ttttGGCGTATGGAGCGCCTGGCGTCTGGTTaaaa < 1:3323008/35‑1 (MQ=255) ttttGGCGTATGGAGCGCATGGCGTCTGGTTaaaa < 1:6480825/35‑1 (MQ=255) tttGGCGTATGGAGCGCCTGGCGTCTGGTTAAAAc < 1:11719595/35‑1 (MQ=255) tttGGCGTATGGAGCGCCTGGCGTCTGGTTAAAAc < 1:10470224/35‑1 (MQ=255) tttGGCGTATGGAGCGCCTGGCGTCTGGTTAAAAc > 1:10026178/1‑35 (MQ=255) tttAGCGTATGGAGCGCCTGGCGTCTGGTTAAAAc < 1:16718047/35‑1 (MQ=255) tttAGCGTATGGAGCGCCTGGCGTCTGGTTAAAAc > 1:8265638/1‑35 (MQ=255) tttAGCGTATGGAGCGCCTGGCGTCTGGTTAAAAc < 1:20250740/35‑1 (MQ=255) ttGGCGTATGGAGCGCCTGGCGTCTGGTTaaaaaa > 1:13125987/1‑33 (MQ=255) ttGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACg < 1:1400570/35‑1 (MQ=255) ttGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACg < 1:7838392/35‑1 (MQ=255) ttGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACg > 1:12938509/1‑35 (MQ=255) ttGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACg < 1:4895497/35‑1 (MQ=255) ttGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACg < 1:3521028/35‑1 (MQ=255) tGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGa > 1:15565964/1‑35 (MQ=255) tGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGa > 1:7814721/1‑35 (MQ=255) tGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGa < 1:5161618/35‑1 (MQ=255) tGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGa > 1:123184/1‑35 (MQ=255) ggCGTATGGAGCGCCTGGCGTCTGGTTAAAACGAc < 1:14168020/35‑1 (MQ=255) ggCGTATGGAGCGCCTGGCGTCTGGTTAAAACGAc < 1:17456969/35‑1 (MQ=255) | TAATATGCTGGTCCGCTGGGCCAGACGC‑GG‑TTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGAC > REL606/3183314‑3183382 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |