New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 293737 =51 (0.500)8 (0.090) 4/40 NT 11.3% intergenic (+7/‑520) ykgD/ykgE predicted DNA‑binding transcriptional regulator/predicted oxidoreductase
?REL606 = 1036069 83 (0.970)intergenic (+41/+35) ycbG/ompA hypothetical protein/outer membrane protein A (3a;II*;G;d)

Only 100 of 250 total aligned reads displayed.

AAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAAC  >  REL606/1036035‑1036103
                                  |                                  
accgaggttgccacaatgcggctaaAAAAAAAAcc                                    <  1:15610536‑M1/10‑1 (MQ=255)
aaaGTCAGTTCAATTTACTAAAGGCAAAAAAAAcc                                    >  1:18716610/1‑35 (MQ=255)
aaaGTCAGTTCAATTTACTAAAGGCAAAAAAAAcc                                    >  1:19091847/1‑35 (MQ=255)
 ccgaggttgccacaatgcggctaaAAAAAAAAccc                                   <  1:18354127‑M1/11‑1 (MQ=255)
 aaGTCAGTTCAATTTACTAAAGGCAAAAAAAACCc                                   <  1:15252871‑M2/35‑2 (MQ=255)
 aaGTCAGTTCAATTTACTAAAGGCAAAAAAAACCc                                   <  1:15387150‑M2/35‑2 (MQ=255)
  cgaggttgccacaatgcggctaaAAAAAAAccccg                                  <  1:11579557‑M1/12‑2 (MQ=255)
  cgaggttgccacaatgcggctaaAAAAAAAacccg                                  <  1:5120000‑M1/12‑2 (MQ=255)
  cgaggttgccacaatgcggctaaAAAAAAAAcccc                                  <  1:6126377‑M1/12‑1 (MQ=255)
  aGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC                                  >  1:4581651‑M1/1‑35 (MQ=255)
   gaggttgccacaatgcggctaaAAAAAAAACCCCg                                 <  1:5047690‑M1/13‑1 (MQ=255)
   gTCAGTTCAATTTACTAAAGGCAAAAAAAACCccg                                 >  1:11359193‑M2/1‑32 (MQ=255)
   gTCAGTTCAATTTACTAAAGGCAAAAAAAACCccg                                 >  1:8008890‑M2/1‑32 (MQ=255)
    tCAGTTCAATTTACTAAAGGCAAAAAAAACCccgc                                >  1:16955710‑M2/1‑31 (MQ=255)
     ggttgccacaatgcggctaaAAAAAAAACCCcgcg                               <  1:8441329‑M1/15‑2 (MQ=255)
     cAGTTCAATTTACTAAAGGCAAAAAAAACCCCgca                               >  1:181555/1‑35 (MQ=255)
     cAGTTCAATTTACTAAAGGCAAAAAAAACCCCgca                               >  1:14209868/1‑35 (MQ=255)
       ttgccacaatgcggctaaAAAAAAAACcccgccgg                             <  1:5371146‑M1/17‑4 (MQ=255)
       gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc                             <  1:8223495/35‑1 (MQ=255)
       gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc                             <  1:3761958/35‑1 (MQ=255)
        ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca                            <  1:16854840/35‑1 (MQ=255)
        ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca                            >  1:13688757/1‑35 (MQ=255)
        ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca                            <  1:7883378/35‑1 (MQ=255)
        ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca                            <  1:12200025/35‑1 (MQ=255)
        ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca                            >  1:19199618/1‑35 (MQ=255)
         tCAATTTACTAAAGGCAAAAAAAACCCCGcagcag                           >  1:13855601/1‑35 (MQ=255)
          cAATTTACTAAAGGCAAAAAAAACCCCGCagcagc                          <  1:18289317/35‑1 (MQ=255)
           aaTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCg                         <  1:828849/35‑1 (MQ=255)
           aaTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCg                         >  1:17025183/1‑35 (MQ=255)
           aaTTTACTAAAGGCAAAAAAAACACCGCAGCAGCg                         <  1:803175/35‑1 (MQ=255)
            aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCgg                        >  1:2755253/1‑35 (MQ=255)
            aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCgg                        >  1:4703460/1‑35 (MQ=255)
             tttACTAAAGGCAAAAAAAACCCCGCAGCAGCggg                       >  1:4749420/1‑35 (MQ=255)
             tttACTAAAGGCAAAAAAAACCCCGCAGCAGCggg                       <  1:1309313/35‑1 (MQ=255)
              ttACTAAAGGCAAAAAAAACCCCGCAGCAGCgggg                      >  1:3375551/1‑35 (MQ=255)
               tACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGt                     >  1:14398195/1‑35 (MQ=255)
                aCTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGtt                    <  1:15888722/35‑1 (MQ=255)
                  tAAAGGCAAAAAAATCCCCGCAGCAGCGGGGtttt                  <  1:20038400/35‑1 (MQ=255)
                  tAAAGGCAAAAAAAACCCCGCAGCAGCGGGGtttt                  >  1:10047213/1‑35 (MQ=255)
                  tAAAGGCAAAAAAAACCACGCAGCAGCGGGGtttt                  <  1:4393024/35‑1 (MQ=255)
                   aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt                 <  1:18778050/35‑1 (MQ=255)
                   aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt                 >  1:13526826/1‑35 (MQ=255)
                   aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt                 >  1:13944937/1‑35 (MQ=255)
                   aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt                 >  1:20561049/1‑35 (MQ=255)
                    aaGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTc                >  1:14508070/1‑35 (MQ=255)
                    aaGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTc                <  1:2377649/35‑1 (MQ=255)
                     ccgcaAAAAAAACCCCccagccataaagcgatgcc               <  1:10323102‑M1/33‑20 (MQ=255)
                     aGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCt               <  1:3333535/35‑1 (MQ=255)
                       gCAAAAAAAACCCCccagccataaagcgatgccgc             <  1:5987452‑M1/35‑22 (MQ=255)
                        cAAAAAAACCCCCagccgcgcggcgcaggtgaagt            <  1:6571056‑M1/35‑23 (MQ=255)
                         caaaaaaacCCCccagccataaagcgatgccgcgt           <  1:9622703‑M1/34‑24 (MQ=255)
                         caaaaaaacCCCccagccataaagcgatgccgcgt           <  1:12711325‑M1/34‑24 (MQ=255)
                         aaaaaaaaCCCCccagccataaagcgatgccgcgt           <  1:5212776‑M1/35‑24 (MQ=255)
                         aaaaaaaaCCCCagccgcgcggcgcaggtgaagtg           <  1:8983058‑M1/35‑24 (MQ=255)
                         aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa           <  1:16044588/35‑1 (MQ=255)
                         aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa           >  1:10306646/1‑35 (MQ=255)
                         aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa           <  1:9718080/35‑1 (MQ=255)
                         aaaaaaaaCCCAGCAGCAGCGGGGTTTTTCTACCa           <  1:8858472/35‑1 (MQ=255)
                          agaaaaaccCCccagccataaagcgatgccgcgtt          <  1:3556755‑M1/33‑25 (MQ=255)
                          aaaacaaCCccgccagaaatcagggcaaagataat          >  1:12502367‑M2/1‑9 (MQ=255)
                          aaaaaacCCccgccagaaatcagggcaaagataat          >  1:10405087‑M2/1‑9 (MQ=255)
                          aaaaaaaCCccgccagaaatcagggcaaagataat          >  1:19861292‑M2/1‑9 (MQ=255)
                          aaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAg          >  1:16757842/1‑35 (MQ=255)
                          aaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAg          >  1:9332347/1‑35 (MQ=255)
                           aaaaaaTCCCccagccataaagcgatgccgcgttt         <  1:5927032‑M1/35‑26 (MQ=255)
                           aaaaaaCCCCccagccataaagcgatgccgcgttt         <  1:13124348‑M1/35‑26 (MQ=255)
                            aaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGAc        <  1:19789947/35‑1 (MQ=255)
                             aaaaTCCCccagccataaagcgatgccgcgtttga       <  1:7001795‑M1/35‑28 (MQ=255)
                             aaaaTCCCccagccataaagcgatgccgcgtttga       <  1:9444665‑M1/35‑28 (MQ=255)
                             aaaaCCCCccagccataaagcgatgccgcgtttga       <  1:3697308‑M1/35‑28 (MQ=255)
                             aaaaCCCCGCAGCAGCGTGGTTTTTCTACCAGACg       >  1:13412543/1‑35 (MQ=255)
                             aaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACg       <  1:20482619/35‑1 (MQ=255)
                             aaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACg       <  1:20381588/35‑1 (MQ=255)
                             aaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACg       >  1:11463482/1‑35 (MQ=255)
                              cacccccgccagaaatcagggcaaagataatccgc      >  1:1473895‑M2/4‑5 (MQ=255)
                              aaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACga      <  1:221169/35‑1 (MQ=255)
                               ccccccagccgcgcggcgcaggtgaagtgacgatt     <  1:8599492‑M1/33‑30 (MQ=255)
                               acccccccagccataaagcgatgccgcgtttgagc     <  1:7579882‑M1/33‑30 (MQ=255)
                               aatcccccagccataaagcgatgccgcgtttgagc     <  1:10745308‑M1/32‑30 (MQ=255)
                               aaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgag     >  1:11066962/1‑35 (MQ=255)
                               aaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgag     <  1:6442533/35‑1 (MQ=255)
                               aaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgag     >  1:15450368/1‑35 (MQ=255)
                                cccccGCAGCAGCGGGGTTTTTCTACCAGACgaga    <  1:7440704/34‑1 (MQ=255)
                                aCCCCGCAGCAGCGGGGTTTTTGTACCAGACgaga    <  1:14477554/35‑1 (MQ=255)
                                 ccccgccagaaatcagggcaaagataatccgcatt   >  1:17528658‑M2/1‑2 (MQ=255)
                                 ccccgccagaaatcagggcaaagataatccgcatt   >  1:689295‑M2/1‑2 (MQ=255)
                                 ccccccagccataaagcgatgccgcgtttgagcgc   <  1:16532210‑M1/35‑32 (MQ=255)
                                 ccccccagccataaagcgatgccgcgtttgagcgc   <  1:3436941‑M1/35‑32 (MQ=255)
                                 ccccGCAGCAGCGGGGTTTTTCTACCAGACGAGaa   >  1:15822593/1‑35 (MQ=255)
                                 ccccGCAGCAGCGGGGTTTTTCTACCAGACGAGaa   >  1:16461958/1‑35 (MQ=255)
                                 ccccGCAGCAGCGGGGTTTTTCTACCAGACGAGaa   <  1:17417374/35‑1 (MQ=255)
                                  cccgccagaaatcagggcaaagataatccgcattc  >  1:7963738‑M2/1‑1 (MQ=255)
                                  cccccagccataaagcgatgccgcgtttgagcgca  <  1:4147445‑M1/35‑33 (MQ=255)
                                  cccccagccataaagcgatgacgcgtttgagcgca  <  1:18384630‑M1/35‑33 (MQ=255)
                                  cccagccgcgcggcgcaggtgaagtgacgattatc  <  1:2951344‑M1/35‑33 (MQ=255)
                                  cccagccgcgcggcgcaggtgaagtgacgattatc  <  1:15084078‑M1/35‑33 (MQ=255)
                                  cccGCAGCAGCGGGGTTTTTCTACCAGACGAGCAc  >  1:4038242/1‑35 (MQ=255)
                                  cccGCAGCAGCGGGGTTTTTCTACCAGACGAGAAn  <  1:6162860/35‑1 (MQ=255)
                                  cccGCAGCAGCGGGGTTTTTCTACCAGACGAGAAc  >  1:9772126/1‑35 (MQ=255)
                                  cccGCAGCAGCGGGGTTTTTCTACCAGACGAGAAc  >  1:9798144/1‑35 (MQ=255)
                                  |                                  
AAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAAC  >  REL606/1036035‑1036103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.