New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 642994 | 84 (0.820) | 9 (0.110) | 4/38 | NT | 12.4% | intergenic (‑195/+14) | lipA/ybeF | lipoyl synthase/predicted DNA‑binding transcriptional regulator |
? | REL606 | 967183 = | 61 (0.750) | coding (423/591 nt) | ycaK | hypothetical protein |
Only 100 of 158 total aligned reads displayed.
GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTGTAACAATACTTTTTCAAAATGCATTACGGATAAC > REL606/642960‑643028 | gtgCCATTTTATCGTTCTGCGCTGTGATCTGGCTG < 1:15156957‑M1/35‑1 (MQ=255) gtgCCATTTTATCGTTCTGCGCTGTGATCTGGCTG > 1:15455843‑M1/1‑35 (MQ=255) gtgCCATTTTATCGTTCTGCGCTGTGATCTGGCTG < 1:19367317‑M1/35‑1 (MQ=255) gtgCCATTTTATCGTTCTGCGCTGTGATCTGGCTG > 1:12248690‑M1/1‑35 (MQ=255) gtgCCATTTTATCGTTCTGCGCTGTGATCTGGCTG > 1:19958181‑M1/1‑35 (MQ=255) tgCCATTTTATCGTTCTGCGCTGTGATCTGGCTGg > 1:17960374‑M1/1‑34 (MQ=255) gcaaTTTTATCGTTCTGCGCTGTGATCTGGCTGTa < 1:13458294/32‑1 (MQ=255) gCCATTTTATCGTTCTGCGCTGTGATCTGGCTGTa < 1:5250789/35‑1 (MQ=255) ccATTTTATCGTTCTGCGCTGTGATCTGGCTGgga > 1:16894857‑M1/1‑32 (MQ=255) ccATTTTATCGTTCTGCGCTGTGATCTGGCTGTaa < 1:19919878/35‑1 (MQ=255) cATTTTATCGTTCTGCGCTGTGATCTGGCTGTAAc < 1:6226542/35‑1 (MQ=255) cATTTTATAGTTCTGCGCTGTGATCTGGCTGTAAc < 1:8137908/35‑1 (MQ=255) aTTTTATCGTTCTGCGCTGTGATCTGGCTGTAACa < 1:4500273/35‑1 (MQ=255) aTTTTATCGTTCTGCGCTGTGATCTGGCTGTAACa < 1:6432040/35‑1 (MQ=255) aTTTTATCGTTCTGCGCTGTGATCTGGCTGTAACa < 1:2751070/35‑1 (MQ=255) aTTTTATCGTTCTGCGCTGTGATCTGGCTGTAACa < 1:2944744/35‑1 (MQ=255) aTTTTATCGTTCTGCGCTGTGATCTGGCTGTAACa < 1:7147774/35‑1 (MQ=255) aTTTTATCGTTCTGCGCTGTGATCTGGCTGTAACa < 1:16687350/35‑1 (MQ=255) tttATCGTTCTGCGCTGTGATCTGGCTGggaaaaa > 1:4799175‑M1/1‑28 (MQ=255) tttATCGTTCTGCGCTGTGATCTGGCTGTAACAAt < 1:14841213/35‑1 (MQ=255) tttATCGTTCTGCGCTGTGATCTGGCTGTAACAAt < 1:14129367/35‑1 (MQ=255) tttATCGTTCTGCGCTGTGATCTGGCTGTAACAAt < 1:11755859/35‑1 (MQ=255) tttATCGTTCTGCGCTGTGATCTGGCTGTAACAAt < 1:20132256/35‑1 (MQ=255) ttATCGTTCTGCGCTGTGATCTGGCTTTAACAATa > 1:10835525/1‑35 (MQ=255) ttATCGTTCTGCGCTGTGATCTGGCTGgtaaaaaa > 1:20525288‑M1/1‑27 (MQ=255) ttATCGTTCTGCGCTGTGATCTGGCTGggaaaaaa > 1:703448‑M1/1‑27 (MQ=255) ttATCGTTCTGCGCTGTGATCTGGCTGggaaaaaa > 1:17219780‑M1/1‑27 (MQ=255) ttATCGTTCTGCGCTGTGATCTGGCTGTAACAATa < 1:4755138/35‑1 (MQ=255) ttATCGTTCTGCGCTGTGATCTGGCTGTAACAATa < 1:14527885/35‑1 (MQ=255) ttATCGTTCTGCGCTGTGATCTGGCTGTAACAATa < 1:14318916/35‑1 (MQ=255) tATCGTTCTGCGCTGTGATCTGGCTGgggaaaaaa > 1:20147231‑M1/1‑26 (MQ=255) tATCGTTCTGCGCTGTGATCTGGCTGggaaaatac > 1:3881840‑M1/1‑26 (MQ=255) tATCGTTCTGCGCTGTGATCTGGCTGTAACAATAc < 1:10841146/35‑1 (MQ=255) aTCGTTCTGCGCTGTGATCTGGCTGggaaaaaact > 1:20539198‑M1/1‑25 (MQ=255) aTCGTTCTGCGCTGTGATCTGGCTGggaaaaaaat > 1:3924247‑M1/1‑25 (MQ=255) aTCGTTCTGCGCTGTGATCTGGCTGTAACAATACt < 1:5741770/35‑1 (MQ=255) aTCGTTCTGCGCTGTGATCTGGCTGTAACAATACt < 1:20475818/35‑1 (MQ=255) aTCGTTCTGCGCTGTGATCTGGCTGGAAAAATACt > 1:16061867/1‑35 (MQ=25) tCGTTCTGCGCTGTGATCTGGCTGTAACAATACtt < 1:1188252/35‑1 (MQ=255) tCGTTCTGCGCTGTGATCTGGCTGTAACAATACtt < 1:6159335/35‑1 (MQ=255) tCGTTCTGCGCTGTGATCTGGCTGTAACAATACtt < 1:18628427/35‑1 (MQ=255) tCGTTCTGCGCTGTGATCTGGCTGTAACAATACtt < 1:11416495/35‑1 (MQ=255) tCGTTCTGCGCTGTGATCTGGCTGGGACAAAACtt > 1:10965609/1‑35 (MQ=25) cGTTCTGCGCTGTGATCTGGCTGTAACAATACttt < 1:5726997/35‑1 (MQ=255) cGTTCTGCGCTGTGATCTGGCTGTAACAATACttt < 1:17647731/35‑1 (MQ=255) cGTTCTGCGCTGTGATCTGGCTGTAACAATACttt < 1:515912/35‑1 (MQ=255) cGTTCTGCGCTGTGATCTGGCTGGGACAAAACttt > 1:8304167/1‑35 (MQ=25) ttCTGCGCTGTGATCTGGCTGTAACGATACttttt < 1:13657969/35‑1 (MQ=255) ttCTGCGCTGTGATCTGGCTGTAACAATACttttt < 1:19777720/35‑1 (MQ=255) tCTGCGCTGTGATCTGGCTGTAACAATACTTTTTc < 1:2523693/35‑1 (MQ=255) tCTGCGCTGTGATCTGGCTGTAACAATACTTTTTc < 1:19546589/35‑1 (MQ=255) cTGCGCTGTGATCTGGCTGTAACAATACTTTTTCa < 1:10160619/35‑1 (MQ=255) tGCGCTGTGATCTGGCTGTAACAATACTTTTTCaa < 1:1659111/35‑1 (MQ=255) gcgcTGTTATCTGGCTGGAACAATACTTTTTCaaa > 1:1445080/1‑35 (MQ=25) gcgcTGTTATCTGGCTGGAACAATACTTTTTCaaa > 1:15138742/1‑35 (MQ=25) cgcTGTGATCTGGCTGTAACAATACTTTTTCaaaa < 1:3688700/35‑1 (MQ=255) cgcTGTGATCTGGCTGTAACAATACTTTTTCaaaa < 1:14828573/35‑1 (MQ=255) gcTGTGATCTGGCTGTAACAATACTTTTTCAAAAt < 1:1775854/35‑1 (MQ=255) gcTGTGATCTGGCTGTAACAATACTTTTTCAAAAt < 1:4155628/35‑1 (MQ=255) gcTGTGATCTGGCTGTAACAATACTTTTTCAAAAt < 1:11014345/35‑1 (MQ=255) tgtgATCTGGCTGTAACAATACTTTTTCAAAATGc < 1:18607847/35‑1 (MQ=255) tgtgATCTGGCTGTAACAATACTTTTTCAAAATGc < 1:7935729/35‑1 (MQ=255) tgATCTGGCTGTAACAATACTTTTTCAAAATGCAt < 1:15375490/35‑1 (MQ=255) tgATCTGGCTGTAACAATACTTTTTCAAAATGCAt < 1:15814030/35‑1 (MQ=255) gATCTGGCTGTAACAATACTTTTTCAAAATGCAtt < 1:7193023/35‑1 (MQ=255) aTCTGGCTGTAACAATACTTTTTCAAAATGCATTa < 1:10893075/35‑1 (MQ=255) aTCTGGCTGTAACAATACTTTTTCAAAATGCATTa < 1:7460815/35‑1 (MQ=255) aTCTGGCTGTAACAATACTTTTTCAAAATGCATTa > 1:9563641/1‑35 (MQ=255) aTCTGGCTGTAACAATACTTTTTCAAAATGCATTa > 1:1809472/1‑35 (MQ=255) tCTGGCTGTAACAATACTTTTTCAAAATGCATTAc < 1:4654351/35‑1 (MQ=255) tCTGGCTGTAACAATACTTTTTCAAAATGCATTAc < 1:6905014/35‑1 (MQ=255) cTGGCTGTAACAATACTTTTTCAAAATGCATTACg < 1:10305283/35‑1 (MQ=255) cTGGCTGTAACAATACTTTTTCAAAATGCATTACg < 1:303793/35‑1 (MQ=255) cTGGCTGTAACAATACTTTTTCAAAATGCATTACg < 1:6220826/35‑1 (MQ=255) tGGCTGTAACAATACTTTTTCAAAATGCATTACgg < 1:7392785/35‑1 (MQ=255) tGGCTGTAACAATACTTTTTCAAAATGCATTACgg < 1:17408814/35‑1 (MQ=255) tGGCTGTAACAATACTTTTTCAAAATGCATTACgg < 1:14337422/35‑1 (MQ=255) tGGCTGTAACAATACTTTTTCAAAATGCATTACgg < 1:5562673/35‑1 (MQ=255) tGGCTGTAACAATACTTTTTCAAAATGCATTACgg < 1:11444070/35‑1 (MQ=255) ggctgggaaaaaaatataagcgattatttaaaaaa < 1:2619710‑M1/35‑31 (MQ=255) ggctgggaaaaaaatataagcgattatttaaaaaa > 1:19133477‑M1/1‑5 (MQ=255) ggCTGTAACAATACTTTTTCAAAATGCATTACGGa < 1:19087344/35‑1 (MQ=255) ggCTGTAACAATACTTTTTCAAAATGCATTACGGa < 1:3264340/35‑1 (MQ=255) gctgggaaaaaaatataagcgattatttaaaaaat < 1:12946803‑M1/35‑32 (MQ=255) gctgggaaaaaaatataagcgattatttaaaaaat > 1:5182388‑M1/1‑4 (MQ=255) gctgggaaaaaaatataagcgattatttaaaaaat > 1:10491770‑M1/1‑4 (MQ=255) gCTGTAACAATACTTTTTCAAAATGCATTACGGAt < 1:15004331/35‑1 (MQ=255) gCTGTAACAATACTTTTTCAAAATGCATTACGGAt < 1:418735/35‑1 (MQ=255) gCTGTAACAATACTTTTTCAAAATGCATTACGGAt < 1:8547684/35‑1 (MQ=255) ctgggaaaaaaatataagcgattatttaaaaaata < 1:17952124‑M1/35‑33 (MQ=255) cTGTAACAATACTTTTTCAAAATGCATTACGGATa > 1:5636039/1‑35 (MQ=255) atGTAACAATACTTTTTCAAAATGCATTACGGATa < 1:12541776/34‑1 (MQ=255) tgggaaaaaaatataagcgattatttaaaaaatat > 1:3036409‑M1/1‑2 (MQ=255) tGTAACAATACTTTTTCAAAATGCATTACGGATaa > 1:8418516/1‑35 (MQ=255) tGTAACAATACTTTTTCAAAATGCATTACGGATaa > 1:3600962/1‑35 (MQ=255) tGTAACAATACTTTTTCAAAATGCATTACGGATaa < 1:4099022/35‑1 (MQ=255) gTAACAATACTTTTTCAAAATGCATTACGGATAAc > 1:1063776/1‑35 (MQ=255) gTAACAATACTTTTTCAAAATGCATTACGGATAAc < 1:17259191/35‑1 (MQ=255) gTAACAATACTTTTTCAAAATGCATTACGGATAAc < 1:9037436/35‑1 (MQ=255) gTAACAATACTTTTTCAAAATGCATTACGGATAAc < 1:9207653/35‑1 (MQ=255) | GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTGTAACAATACTTTTTCAAAATGCATTACGGATAAC > REL606/642960‑643028 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |