New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 506020 =104 (1.010)12 (0.120) 4/48 NT 14.8% intergenic (+28/‑62) allR/gcl DNA‑binding transcriptional repressor/glyoxylate carboligase
?REL606 758029 = 34 (0.330)coding (806/1266 nt) tolA cell envelope integrity inner membrane protein TolA

GCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCT  >  REL606/757995‑758063
                                   |                                  
gcagcaGCTGATAAGAAAGCAGCGGCAGAAAAAgc                                    <  1:7262637/35‑1 (MQ=255)
gcagcaGCTGATAAGAAAGCAGCGGCAGAAAAAgc                                    <  1:7104503/35‑1 (MQ=255)
 cgccagcTGATAAGAAAGCAGCGGCAGAAAAAgcc                                   <  1:5127959/32‑1 (MQ=255)
 cagcagCTGATAAGAAAGCAGCGGCAGAAAAAgcc                                   <  1:18769098/35‑1 (MQ=255)
 cagcagCTGATAAGAAAGCAGCGGCAGAAAAAgcc                                   <  1:10871859/35‑1 (MQ=255)
 cagcagCTGATAAGAAAGCAGCGGCAGAAAAAgcc                                   >  1:14471555/1‑35 (MQ=255)
 cagcagCTGATAAGAAAGCAGCGGCAGAAAAAgcc                                   >  1:17650271/1‑35 (MQ=255)
 caccagcTGATAAGAAAGCAGCGGCAGAAAAAgcc                                   <  1:9639879/32‑1 (MQ=255)
 caccagcTGATAAGAAAGCAGCGGCAGAAAAAgcc                                   <  1:18544899/32‑1 (MQ=255)
  cgcagcTGATAAGAAAGCAGCGGCAGAAAAAgccg                                  <  1:8212164/34‑1 (MQ=255)
   gcagcTGATAAGAAAGCAGCGGCAGAAAAAgccgc                                 >  1:12865094/1‑35 (MQ=255)
   gcagcTGATAAGAAAGCAGCGGCAGAAAAAgccgc                                 >  1:16037291/1‑35 (MQ=255)
   gcagcTGATAAGAAAGCAGCGGCAGAAAAAaccgc                                 >  1:13672304/1‑35 (MQ=255)
    cagcTGATAAGAAAGCAGCGGCAGAAAAAgccgcc                                >  1:18317186/1‑35 (MQ=255)
     agcTGATAAGAAAGCAGCTGCAGAAAAAGccgccg                               >  1:15397827/1‑35 (MQ=255)
      gcTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc                              >  1:1269156/1‑35 (MQ=255)
      gcTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc                              >  1:13052478/1‑35 (MQ=255)
      gcTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc                              >  1:14075410/1‑35 (MQ=255)
       cTGATAAGAAAGCAGCTGCAGAAAAAGCCGCCGCa                             >  1:11329777/1‑35 (MQ=255)
       cTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCa                             >  1:5066735/1‑35 (MQ=255)
       cTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCa                             >  1:16083414/1‑35 (MQ=255)
        tGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAg                            >  1:8279643/1‑35 (MQ=255)
        tGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAg                            >  1:3547001/1‑35 (MQ=255)
          ntAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGAc                          >  1:18870123/2‑35 (MQ=255)
          aTAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGAc                          >  1:10875435/1‑35 (MQ=255)
            aaGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaa                        >  1:7547790/1‑35 (MQ=255)
            aaGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaa                        >  1:12710452/1‑35 (MQ=255)
             aGAAAGCAGCGGCAGAAAAAGACGCCGCAGACaaa                       <  1:7745301/35‑1 (MQ=255)
              gAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaa                      >  1:17647039/1‑35 (MQ=255)
              gAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaa                      >  1:13488759/1‑35 (MQ=255)
               aaaGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaa                     >  1:7009911/1‑35 (MQ=255)
                aaGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa                    >  1:3939258/1‑35 (MQ=255)
                     gcGGCAGAAAAAGCCGCCGCAGACAAAAAagcggc               >  1:5222571/1‑35 (MQ=255)
                     gcGGCAGAAAAAGCCGCCGCAGACAAAAAagcggc               >  1:11820506/1‑35 (MQ=255)
                      cGGCAGAAAAAGCCGCCGCAGACAAAAAagcggca              >  1:1410578/1‑35 (MQ=255)
                       ggaaaaaaacccCCGCCGCAGACAAAAAagcggca              <  1:5963280‑M2/23‑1 (MQ=255)
                        ggaaaaaacccCCGCCGCAGACAAAAAagcggcag             <  1:10548781‑M2/24‑1 (MQ=255)
                        gaaaaaaacccCCGCCGCAGACAAAAAagcggcag             <  1:8593529‑M2/24‑1 (MQ=255)
                        gaaaaaaaaccCCGCCGCAGACAAAAAagcggcag             <  1:1378270‑M2/24‑1 (MQ=255)
                        gaaaaaaaaccCCGCCGCAGACAAAAAagcggcag             <  1:1696975‑M2/24‑1 (MQ=255)
                         cAGAAAAAGCCGCCGCAGACAAAAAagcggcaggg           >  1:18588705/1‑33 (MQ=255)
                         cAGAAAAAGCCGCCGCAGACAAAAAagcggcagcg           >  1:6227572/1‑35 (MQ=255)
                         cAGAAAAAGCCGCCGCAGACAAAAAagcggcagcg           >  1:10454120/1‑35 (MQ=255)
                         cAGAAAAAGCCGCCGCAGACAAAAAagcggcagcg           >  1:13989204/1‑35 (MQ=255)
                         cAGAAAAAGCCGCCGCAGACAAAAAagcggcagcg           >  1:14078151/1‑35 (MQ=255)
                         aaaaaaacccCCGCCGCAGACAAAAAagcggcagc            <  1:9787701‑M2/25‑1 (MQ=255)
                          aaaaaacccCCGCCGCAGACAAAAAagcggcagcg           <  1:1359483‑M2/26‑1 (MQ=255)
                          aaaaaacccCCGCCGCAGACAAAAAagcggcagcg           <  1:13892608‑M2/26‑1 (MQ=255)
                          aaaaaaaccCCGCCGCAGACAAAAAagcggcagcg           <  1:10900420‑M2/26‑1 (MQ=255)
                          aGAAAAACCCCCAGCCGACAAAAAagcagcagaaa          <  1:4605060/35‑4 (MQ=18)
                           gAAAAAGCCGCCGCAGACAAAAAagcggcagcggc         >  1:12680834/1‑35 (MQ=255)
                           gAAAAAGCCGCCGCAGACAAAAAagcggcagcggc         >  1:15999999/1‑35 (MQ=255)
                           gAAAAAGCCGCCGCAGACAAAAAagcggcagcggc         >  1:13617206/1‑35 (MQ=255)
                            aaaacccCCGCCGCAGACAAAAAagcggcagcggc         <  1:11503203‑M2/28‑1 (MQ=255)
                            aaaaaccCCGCCGCAGACAAAAAagcggcagcggc         <  1:13383065‑M2/28‑1 (MQ=255)
                            aaaaaGCCCGCCGCAGACAAAAAagcggcagcggc         <  1:7857025/35‑1 (MQ=25)
                            aaaaaGCCGCCGCAGACAAAAAAgcggcaggggca        >  1:10746376/1‑35 (MQ=255)
                            aaaaaGCCGCCGCAGACAAAAAAgcggcagcggca        >  1:6632138/1‑35 (MQ=255)
                            aaaaaGCCGCCGCAGACAAAAAAgcggcagcggca        >  1:15543709/1‑35 (MQ=255)
                             aaacccCCGCCGCAGACAAAAAAgcggcagcggca        <  1:3844024‑M2/29‑1 (MQ=255)
                             aaaaGCCGCCGCAGACAAAAAAGCGGCAGCGGCaa       >  1:19979155/1‑35 (MQ=255)
                              aacccCCGCCGCAGACAAAAAAGCGGCAGCGGCaa       <  1:11144650‑M2/30‑1 (MQ=255)
                              aacccCCGCCGCAGACAAAAAAGCGGCAGCGGCaa       <  1:2313847‑M2/30‑1 (MQ=255)
                              aacccCCGCCGCAGACAAAAAAGCGGCAGCAGCaa       <  1:14534837‑M2/30‑1 (MQ=255)
                              aaaccCCGCCGCAGACAAAAAAGCGGCAGCGGCaa       <  1:12630599‑M2/30‑1 (MQ=255)
                              aaaGCCGCCGCAGACAAAAAAGCGGCAGGGGCaaa      >  1:16990763/1‑35 (MQ=255)
                              aaaGCCGCCGCAGACAAAAAAGCGGCAGCGGCcaa      >  1:17052723/1‑35 (MQ=255)
                              aaaGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaa      >  1:17127711/1‑35 (MQ=255)
                              aaaGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaa      >  1:1476861/1‑35 (MQ=255)
                               acccCCGCCGCAGACAAAAAAGCGGCAGCGGCaaa      <  1:11588932‑M2/31‑1 (MQ=255)
                               acccCCGCCGCAGACAAAAAAGCGGCAGCGGCaaa      <  1:11491063‑M2/31‑1 (MQ=255)
                               aaccCCGCCGCAGACAAAAAAGCGGCAGCGGCaaa      <  1:6388349‑M2/31‑1 (MQ=255)
                               aaGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa     >  1:6497006/1‑35 (MQ=255)
                               aaGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa     >  1:701179/1‑35 (MQ=255)
                                cgcCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa     <  1:116035‑M2/32‑1 (MQ=255)
                                 ccCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAg    <  1:13371087‑M2/33‑1 (MQ=255)
                                 ccCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAg    <  1:19457405‑M2/33‑1 (MQ=255)
                                 ccCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAg    <  1:14445539‑M2/33‑1 (MQ=255)
                                   ccgccgCAGACAAAAAAGCGGCAGCGGCAAAAACt  >  1:16306248/1‑35 (MQ=255)
                                   |                                  
GCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCT  >  REL606/757995‑758063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.