New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 306962169 (0.670)12 (0.140) 4/40 NT 17.1% coding (838/1500 nt) pitB phosphate transporter
?REL606 = 3625456 59 (0.690)pseudogene (7/738 nt) yhjQ b3534; cell division protein (chromosome partitioning ATPase)

GGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3069584‑3069621
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGGGGGCGGGGA  <  REL606/3625456‑3625445
                                                  
GGCAATGGAGGTTCCATCGCAATCAACTTCTGCGG                 <  1:503564/35‑1
GGCAATGGAGGTTCCATCGCAATCAACTTCTGCGG                 <  1:4362987/35‑1
GGCAATGGAGGTTCCATCGCAATCAACTTCTGCGG                 <  1:18994230/35‑1
GGCAATGGAGGGTCCATCGCAATCAACTTCTGCGG                 >  1:12396742/1‑35
 GCAATGGAGGTTCCATCGCAATCAACTTCTGCGGC                <  1:12823128/35‑1
 GCAATGGAGGTTCCATCGCAATCAACTTCTGCGGC                <  1:12933558/35‑1
 GCAATGGAGGTTCCATCGCAATCAACTTCTGCGGC                <  1:2589447/35‑1
  CAATGGAGGTTCCATCGCAATCAACTTCTGCGGCA               <  1:9481640/35‑1
  CAATGGAGGTTCCATCGCAATCAACTTCTGCGGCA               <  1:9221277/35‑1
  CAATGGAGGTTCCATCGCAATCAACTTCTGCGGCA               <  1:13622338/35‑1
  CAATGGAGGTTCAATCGCAATCAACTTCTGCGGCA               <  1:2824881/35‑1
  CAATGGAGGGTCCATCGCAATCAACTTCTGCGGCA               >  1:16206571/1‑35
   AATGGAGGTTCCATCGCAATCAACTTCTGCGGCAG              <  1:6549745/35‑1
    ATGGAGGGTCCATCGCAATCAACTTCTGCGGCAGG             >  1:10781162/1‑35
    ATGGAGGGTCCATCGCAATCAACTTCTGCGGCAGG             >  1:14411894/1‑35
    ATGGAGGGTCCATCGCAATCAACTTCTGCGGCAGG             >  1:14130098/1‑35
     TGGAGGTTCCATCGCAATCAACTTCTGCGGCAGGG            >  1:16496884/1‑35
      GGAGGTTCCATCGCAATCAACTTCTGCGGCAGGGG           >  1:955876/1‑35
      GGAGGTTCCATCGCAATCAACTTCTGCGGCAGGGG           >  1:10983670/1‑35
      GGAGGTTCCATCGCAATCAACTTCTGCGGCAGGGG           >  1:12878756/1‑35
       GAGGTTCCATCGCAATCAACTTCTGCGGCAGGGGG          >  1:16779454/1‑35
       GAGGTTCCATCGCAATCAACTTCTGCGGCAGGGGG          >  1:1693778/1‑35
        AGGTTCCATCGCAATCAACTTCTGCGGCAGGGtag         >  1:7797552/1‑32
        AGGTTCCATCGCAATCAACTTCTGCGGCAGGGGGG         >  1:16595993/1‑35
        AGGTTCCATCGCAATCAACTTCTGCGGCAGGGGGG         >  1:15604591/1‑35
        AGGTTCCATCGCAATCAACTTCTGCGGCAGGGCGG         >  1:3020323/1‑35
         GGTTCCATCGCAATCAACTTCTGCGGCAGGGGGGG        >  1:4958347/1‑35
           TTCCATCGCAATCAACTTCTGCGGCAGGGGGGGgg      >  1:5351892/1‑33
           TTCCATCGCAATCAACTTCTGCGGCAGGGGGGGgg      >  1:13405240/1‑33
           TTCCATCGCAATCAACTTCTGCGGCAGGGGGGGgg      >  1:3666096/1‑33
           TTCCATCGCAATCAACTTCTGCGGCAGGGGGGGgg      >  1:16029725/1‑33
            TCCATCGCAATCAACTTCTGCGGCAGGGGGGGGGG     >  1:7292365/1‑35
             CCATCGCAATCAACTTCTGCGGCAGGGGGGGGGGG    >  1:2631909/1‑35
              CATCGCAATCAACTTCTGCGGCAGGGGGGGGGGGG   >  1:6320725/1‑35
              CATCGCAATCAACTTCTGCGGCAGGGGGGGGGGGG   >  1:16499908/1‑35
               ATCGCAATCAACTTCTGCGGCAGGGGGGGGGGGGt  >  1:8525978/1‑34
               ATCGCAATCAACTTCTGCGGCAGGGGGGGGGGGGg  >  1:13660785/1‑34
               ATCGCAATCAACTTCTGCGGCAGGGGGGGGGGGGg  >  1:6697121/1‑34
                                                  
GGCAATGGAGGTTCCATCGCAATCAACTTCTGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3069584‑3069621
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGGGGGCGGGGA  <  REL606/3625456‑3625445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.