New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2095315 =91 (0.890)5 (0.070) 3/34 NT 6.2% coding (744/1416 nt) yegB multidrug efflux system protein
?REL606 2237509 = 87 (1.200)intergenic (+34/+69) proL/yejO tRNA‑Pro/predicted autotransporter outer membrane protein

Only 100 of 228 total aligned reads displayed.

CACTGGTGCTTTATCTGCTGCACGCCAGAAATAACAACCGTGCCCTGTTCAGTCTGAAACTGTTCCGTA  >  REL606/2095281‑2095349
                                  |                                  
ctgtttatcgaattaattgcagatataaaaaaacc                                    <  1:7722759‑M1/1‑1 (MQ=255)
ctgtttatcgaattaattgcagatataaaaaaacc                                    >  1:7682232‑M1/35‑35 (MQ=255)
ctgtttatcgaattaattgcagatataaaaaaacc                                    <  1:6619667‑M1/1‑1 (MQ=255)
ctgtttatcgaattaattgcagatataaaaaaacc                                    >  1:17009291‑M1/35‑35 (MQ=255)
ctgtttatcgaattaattgcagatataaaaaaacc                                    <  1:17427081‑M1/1‑1 (MQ=255)
ctgtttatcgaattaattgcagatataaaaaaacc                                    >  1:12647544‑M1/35‑35 (MQ=255)
cACTGGTGCTTTATCTGCTGCACGCCAGAAATaac                                    <  1:4542131/35‑1 (MQ=255)
 tgtttatcgaattaattgcagatataaaaaaacca                                   <  1:18867536‑M1/2‑1 (MQ=255)
 aCTGGTGCTTTATCTGCTGCACGCCAGAAATaaca                                   <  1:14662141/35‑1 (MQ=255)
 aCTGGTGCTTTATCTGCTGCACGCCAGAAATaaca                                   >  1:17999025/1‑35 (MQ=255)
 aCTGGTGCTTTATCTGCTGCACGCCAGAAATaaca                                   <  1:13010589/35‑1 (MQ=255)
  gtttatcgaattaattgcagatataaaaaaaccaa                                  >  1:15962640‑M1/33‑35 (MQ=255)
  gtttatcgaattaattgcagatataaaaaaaccaa                                  >  1:15229937‑M1/33‑35 (MQ=255)
  gtttatcgaattaattgcagatataaaaaaaccaa                                  <  1:6954425‑M1/3‑1 (MQ=255)
  gtttatcgaattaattgcagatataaaaaaaccaa                                  <  1:344660‑M1/3‑1 (MQ=255)
  cTGGTGCTTTATCTGCTGCACGCCAGAAATaacaa                                  >  1:16090477/1‑35 (MQ=255)
  cTGGTGCTTTATCTGCTGCACGCCAGAAATaacaa                                  <  1:16547217/35‑1 (MQ=255)
  cTGGTGCTTTATCTGCTGCACGCCAGAAATaacaa                                  >  1:3228749/1‑35 (MQ=255)
  cTGGTGCTTTATCTGCTGCACGCCAGAAATaacaa                                  <  1:19373430/35‑1 (MQ=255)
  cTGGTGCTTTATCTGCTGCACGCCAGAAATaacaa                                  >  1:16798151/1‑35 (MQ=255)
  cTGGTGCTTTATCTGCTGCACGCCAGAAATaacaa                                  <  1:5767411/35‑1 (MQ=255)
  cTGGTGCTTTATCAGCTGCACGCCAGAAATaacaa                                  >  1:2900360/1‑35 (MQ=255)
   tttatcgaattaattgcagatataaaaaaaccaac                                 >  1:5509207‑M1/32‑35 (MQ=255)
   tttatcgaattaattgcagatataaaaaaaccaac                                 <  1:18598620‑M1/4‑1 (MQ=255)
   tttatcgaattaattgcagatataaaaaaaccaac                                 <  1:11004850‑M1/4‑1 (MQ=255)
   tGGTGCTTTATCTGCTGAACGCCAGAAATaacaac                                 <  1:19635696/35‑1 (MQ=255)
    ttatcgaattaattgcagatataaaaaaaccaacc                                >  1:5140690‑M1/31‑35 (MQ=255)
    ttatcgaattaattgcagatataaaaaaaccaacc                                >  1:6397897‑M1/31‑35 (MQ=255)
    ttatcgaattaattgcagatataaaaaaaccaacc                                >  1:15500457‑M1/31‑35 (MQ=255)
    ggTGCTTTATCTGCTGCACGCCAGAAATAACAAcc                                <  1:2007575/35‑1 (MQ=255)
    ggTGCTTTATCTGCTGCACGCCAGAAATAACAAcc                                <  1:10160002/35‑1 (MQ=255)
    ggTGCTTTATCTGCTGCACGCCAGAAATAACAAcc                                >  1:14056373/1‑35 (MQ=255)
     tatcgaattaattgcagatataaaaaaacCAACCg                               <  1:12438530‑M1/6‑1 (MQ=255)
     tatcgaattaattgcagatataaaaaaacCAACCg                               >  1:1057540‑M1/30‑35 (MQ=255)
     gTGCTTTATCTGCTGCACGCCAGAAATAACAACCg                               >  1:14329026/1‑35 (MQ=255)
     gTGCTTTATCTGCTGCACGCCAGAAATAACAACCg                               >  1:2771848/1‑35 (MQ=255)
      tGCTTTATCTGCTGCACGCCAGAAATAACAACCGt                              >  1:12748743/1‑35 (MQ=255)
      tGCTTTATCTGCTGCACGCCAGAAATAACAACCGt                              >  1:15658100/1‑35 (MQ=255)
      tGCTTTATCTGCTGCACGCCAGAAATAACAACCGt                              >  1:9437212/1‑35 (MQ=255)
      atcgaattaattgctgatataaaaaaacCAACCGt                              >  1:1538121‑M1/29‑35 (MQ=255)
      atcgaattaattgcagatataaaaaaacCAACCGt                              <  1:307916‑M1/7‑1 (MQ=255)
      atcgaattaattgcagatataaaaaaacCAACCGt                              <  1:6888908‑M1/7‑1 (MQ=255)
       gCTTTATCTGCTGCACGCCAGAAATAACAACCGTg                             >  1:16671250/1‑35 (MQ=255)
       gCTTTATCTGCTGCACGCCAGAAATAACAACCGTg                             >  1:19966946/1‑35 (MQ=255)
        cTTTATCTGCTGCACGCCAGAAATAACAACCGTGc                            >  1:10744994/1‑35 (MQ=255)
         tttATCTGCTGCACGCCAGAAATAACAACCGTGcc                           >  1:13963621/1‑35 (MQ=255)
          ttATCTGCTGCACGCCAGAAATAACAACCGTGccc                          >  1:2462129/1‑35 (MQ=255)
           tATCTGCTGCACGCCAGAAATAACAACCGTGCCCt                         >  1:6045840/1‑35 (MQ=255)
            aTCTGCTGCACGCCAGAAATACCAACCGTGCCCTg                        <  1:13451729/35‑1 (MQ=255)
            aTCTGCTGCACGCCAGAAATAACAACCGTGCCCTg                        >  1:5227032/1‑35 (MQ=255)
             tCTGCTGCACGCCAGAAATAACAACCGTGCCCTGt                       >  1:12472446/1‑35 (MQ=255)
               tgctgcACGCCAGAAATAACAACCGTGCCCTGTTc                     >  1:1130015/1‑35 (MQ=255)
                 ctgcACGCCAGAAATACCAACCGTGCCCTGTTCAg                   <  1:19689946/35‑1 (MQ=255)
                 ctgcACGCCAGAAATAACAACCGTGCCCTGTTCAg                   >  1:20470868/1‑35 (MQ=255)
                 ctgcACGCCAGAAATAACAACCGTGCCCTGTTCAg                   >  1:1362348/1‑35 (MQ=255)
                 ctgcACGCCAGAAATAACAACCGTGCCCTGTTCAg                   >  1:8924815/1‑35 (MQ=255)
                  tgcACGCCAGAAATAACAACCGTGCCCTGTTCAGt                  >  1:11068400/1‑35 (MQ=255)
                   gcACCCCAAAAATACCAACCGTGCCCTGTTCAGTc                 <  1:16887967/35‑1 (MQ=25)
                    cACGCCAGAAATAACAACCGTGCCCTGTTCAGTCt                >  1:17605231/1‑35 (MQ=255)
                    cACGCCAGAAATAACAACCGTGCCCTGTTCAGTCt                >  1:17371758/1‑35 (MQ=255)
                    cACGCCAGAAATAACAACCGTGCCCTGTTCAGTCt                >  1:16252740/1‑35 (MQ=255)
                     aCGCCAGAAATAACAACCGTGCCCTGTTCAGTCTg               >  1:8893523/1‑35 (MQ=255)
                     aCGCCAAAAAAACCAACCGTGCCCTGTTCAGTCTg               <  1:8318951/35‑1 (MQ=25)
                     aCGCAAGAAATAACAACAGTGCCCTGTTCAGTCTg               <  1:820630/35‑1 (MQ=37)
                      cGCCAAAAAAACCAACCGTGCCCTGTTCAGTCTGa              <  1:11617813/35‑1 (MQ=25)
                       gCCAGAAATAACAACCGTGCCCTGTTCAGTCTGaa             >  1:8720675/1‑35 (MQ=255)
                        ccAAAAATACCAACCGTGCCCTGTTCAGTCTGaaa            <  1:16500866/35‑1 (MQ=37)
                         cAGAAATAACAACCGTGCCCTGTTCAGTCTGAAAc           >  1:12928596/1‑35 (MQ=255)
                         cAGAAATAACAACCGTGCCCTGTTCAGTCTGAAAc           >  1:16909022/1‑35 (MQ=255)
                         cAGAAATAACAACCGTGCCCTGTTCAGTCTGAAAc           >  1:15862363/1‑35 (MQ=255)
                          aGAAATAACAACCGTGCCCTGTTCAGTCTGAAACt          <  1:17964523/35‑1 (MQ=255)
                           gAAATAACAACCGTGCCCTGTTCAGTCTGAAACTg         >  1:7839996/1‑35 (MQ=255)
                           gAAATAACAACCGAGCCCTGTTCAGTCTGAAACTg         >  1:3218666/1‑35 (MQ=255)
                            aaaaacCAACCGTGCCCTGTTCAGTCTGAAACTGt        >  1:65060‑M1/7‑35 (MQ=255)
                            aaaTAACAACCGTGCCCTGTTCAGTCTGAAACTGt        >  1:11821181/1‑35 (MQ=255)
                            aaaTAACAACCGTGCCCTGTTCAGTCTGAAACTGt        >  1:5006948/1‑35 (MQ=255)
                            aaaTAACAACCGTGCCCTGTTCAGTCTGAAACTGt        >  1:8418659/1‑35 (MQ=255)
                            aaaTAACAACCGTGCCCTGTTCAGTCTGAAACTGt        >  1:13165522/1‑35 (MQ=255)
                             aatacCAACCGTGCCCTGTTCAGTCTGAAACTGtt       >  1:4398041‑M1/6‑35 (MQ=255)
                             aaTAACAACCGTGCCCTGTTCAGTCTGAAACTGtt       >  1:1730769/1‑35 (MQ=255)
                              atacCAACCGTGCCCTGTTCAGTCTGAAACTGTTc      >  1:7319990‑M1/5‑35 (MQ=255)
                              aTAACAACCGTGCCCTGTTCAGTCTGAAACTGTTc      >  1:7930807/1‑35 (MQ=255)
                              aTAACAACCGTGCCCTGTTCAGTCTGAAACTGTTc      >  1:9715764/1‑35 (MQ=255)
                              aTAACAACCGTGCCCTGTTCAGTCTGAAACTGTTc      >  1:6336778/1‑35 (MQ=255)
                              aTAACAACCGTGCCCTGTTCAGTCTGAAACTGTTc      >  1:11504169/1‑35 (MQ=255)
                              aTAACAACCGTGCCCTGTTCAGTCTGAAACTGTTc      >  1:11972209/1‑35 (MQ=255)
                              aTAACAACCGTGCCCTGTTCAGTCTGAAACTGTTc      >  1:19851757/1‑35 (MQ=255)
                               tacCAACCGTGCCCTGTTCAGTCTGAAACTGTTcc     >  1:4503982‑M1/4‑35 (MQ=255)
                               tAACAACCGTGCCCTGTTCAGTATGAAACTGTTcc     <  1:7399856/35‑1 (MQ=255)
                                ccCAACCGTGCCCTGTTCAGTCTGAAACTGTTCCg    >  1:20196824‑M1/3‑35 (MQ=255)
                                acCAACCGTGCCCTGTTCAGTCTGAAACTGTTCCg    >  1:9254696‑M1/3‑35 (MQ=255)
                                aacaacCGTGCCCTGTTCAGTCTGAAACTGTTCCg    >  1:3760383/1‑35 (MQ=255)
                                 cCAACCGTGCCCTGTTCAGTCTGAAACTgttcggt   >  1:18294148‑M1/2‑32 (MQ=255)
                                 acaacCGTGCCCTGTTCAGTCTGAAACTNTTCCNn   >  1:8696811/1‑35 (MQ=255)
                                 acaacCGTGCCCTGTTCAGTCTGAAACTGTTCCGt   >  1:14901050/1‑35 (MQ=255)
                                 acaacCGTGCCCTGTTCAGTCTGAAACTGTTCCGt   >  1:18901661/1‑35 (MQ=255)
                                 acaacCGTGCCCTGTTCAGTCTGAAACTGTTCCGt   >  1:3284242/1‑35 (MQ=255)
                                 acaacCGTGCCCTGTTCAGTCTGAAACTGTTCCGt   >  1:1068328/1‑35 (MQ=255)
                                 acaacCGTGCCCTGTTCAGTCTGAAACTGTTCCGt   >  1:7192926/1‑35 (MQ=255)
                                  CAACCGTGCCCTGTTCAGTCTGAAACTGTTCCGTa  >  1:3974386‑M1/1‑35 (MQ=255)
                                  |                                  
CACTGGTGCTTTATCTGCTGCACGCCAGAAATAACAACCGTGCCCTGTTCAGTCTGAAACTGTTCCGTA  >  REL606/2095281‑2095349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.