New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3331631 =78 (0.760)5 (0.070) 4/34 NT 9.4% coding (257/975 nt) yhdH predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding
?REL606 = 4600665 41 (0.560)coding (36/606 nt) osmY periplasmic protein

ACAAGACTGAAGATTTCGAAAACTCTGCTGGCTGTAATGTTGACCTCTGCCGTCGCGACCG  >  REL606/4600639‑4600699
                          |                                  
aCAAGACTGAAGATTTCGAAAACTCTGCTGGCTGt                            <  1:1167776/35‑1 (MQ=255)
aCAAGACTGAAGATTTCGAAAACTCTGCTGGCTGt                            <  1:5789434/35‑1 (MQ=255)
aCAAGACTGAAGATTTCGAAAACTCTGCTGGCTGt                            <  1:20384607/35‑1 (MQ=255)
aCAAGACTGAAGATTTCGAAAACTATGCTGGCTGt                            <  1:1682113/35‑1 (MQ=255)
 cAAGACTGAAGATTTCGAAAACTCTGCTGGCTGTa                           <  1:4894642/35‑1 (MQ=255)
 cAAGACTGAAGATTTCGAAAACTCTGCTGGCTGTa                           <  1:8354685/35‑1 (MQ=255)
  aaGACTGAAGATTTCGAAAACTCTGCTGGCTGTaa                          <  1:18675059/35‑1 (MQ=255)
  aaGACTGAAGATTTCGAAAACTCTGCTGGCTGTaa                          <  1:3274262/35‑1 (MQ=255)
   aGACTGAAGATTTCGAAAACTCTGCTGGCTGTAAt                         <  1:10949660/35‑1 (MQ=255)
   aGACTGAAGATTTCGAAAACTCTGCTGGCTGTAAt                         <  1:11793142/35‑1 (MQ=255)
   aGACTGAAGATTTCGAAAACTCTGCTGGCTGTAAt                         <  1:17238066/35‑1 (MQ=255)
   aGACTGAAGATTTCGAAAACTCTGCTGGCTGTAAt                         <  1:6753967/35‑1 (MQ=255)
    gACTGAAGATTTCGAAAACTCTGCTGGCTGTAATg                        <  1:3480192/35‑1 (MQ=255)
     aCTGAAGATTTCGAAAACTCTGctggctggggtgg                       <  1:13832297‑M2/35‑14 (MQ=255)
     aCTGAAGATTTCGAAAACTCTGCTGGCTGGGATGt                       >  1:1443682/1‑35 (MQ=37)
     aCTGAAGATTTCGAAAACTATGCTGGCTGTAATGt                       <  1:17494155/35‑1 (MQ=255)
      cTGAAGATTTCGAAAACTCTGctggctggggggtt                      <  1:2823997‑M2/35‑15 (MQ=255)
       tGAAGATTTCGAAAACTCTGctggctggggggttg                     <  1:7458817‑M2/35‑16 (MQ=255)
       tGAAGATTTCGAAAACTCTGCTGGCTGTAATGTTg                     <  1:1919865/35‑1 (MQ=255)
       tGAAGATTTCGAAAACTCTGCTGGCTGTAATGTTg                     <  1:18369297/35‑1 (MQ=255)
       tGAAGATTTCGAAAACTCTGCTGGCTGTAATGTTg                     <  1:17888321/35‑1 (MQ=255)
       tGAAGATTTCGAAAACTCTGCTGGCTGTAATGTTg                     <  1:19975264/35‑1 (MQ=255)
       tGAAGATTTCGAAAACTCTGCTGGCTGGGATGttt                     >  1:15751625/1‑34 (MQ=37)
        gAAGATTTCGAAAACTCTGctggctggggtgttgt                    <  1:2733801‑M2/35‑17 (MQ=255)
        gAAGATTTCGAAAACTCTGctggctggggggttgg                    <  1:7307249‑M2/35‑17 (MQ=255)
        gAAGATTTCGAAAACTCTGCTGGCTGTAATGTTGa                    <  1:16949354/35‑1 (MQ=255)
        gAAGATTTCGAAAACTCTGCTGGCTGTAATGTTGa                    <  1:12378360/35‑1 (MQ=255)
        ctaGATTTCGAAAACTCTGCTGGCTGTAATGTTGa                    <  1:12134497/33‑1 (MQ=255)
         aaGATTTCGAAAACTCTGctggctggggcgtcggt                   <  1:2358331‑M2/35‑18 (MQ=255)
         aaGATTTCGAAAACTCTGCTGGCTGTAATGTTGAc                   <  1:1254858/35‑1 (MQ=255)
          aGATTTCGAAAACTCTGCTGGCTGTAATGTTGAcc                  <  1:12101567/35‑1 (MQ=255)
          aGATTTCGAAAACTCTGCTGGCTGTAATGTTGAcc                  <  1:17971988/35‑1 (MQ=255)
          aGATTTCGAAAACTCTGCTGGCTGTAATGTTGAcc                  <  1:752322/35‑1 (MQ=255)
          aGATTTCGAAAACTCTGCTGGCTGTAATGTTGAcc                  <  1:2285970/35‑1 (MQ=255)
          aGATTTCGAAAACTCTGCTGGCTGTAATGTTGAcc                  <  1:720384/35‑1 (MQ=255)
           gATTTCGAAAACTCTGCTGGTTGTAATGTTGACct                 >  1:2470786/1‑35 (MQ=255)
           gATTTCGAAAACTCTGCTGGCTGTAATGTTGACct                 <  1:16788042/35‑1 (MQ=255)
           gATTTCGAAAACTCTGCTGGCTGTAATGTTGACct                 <  1:715326/35‑1 (MQ=255)
            aTTTCGAAAACTCTGCTGGCTGTAATGTTGACctc                <  1:842854/35‑1 (MQ=255)
            aTTTCGAAAACTCTGCTGGCTGGGGTGTTGACctc                >  1:14019886/1‑35 (MQ=25)
            aTTTCGAAAACTCTGCTGGCTGGGGTGTTGACctc                >  1:2629064/1‑35 (MQ=25)
             tttCGGAAACTCTGCTGGCTGTAATGTTGACctct               <  1:17545415/35‑1 (MQ=255)
             tttCGAAAACTCTGCTGGCTGTAATGTTGACctct               <  1:12992563/35‑1 (MQ=255)
             tttCGAAAACTCTGCTGGCTGTAATGTTGACctct               <  1:8729315/35‑1 (MQ=255)
             tttCGAAAACTCTGCTGGCTGTAATGTTGACctct               <  1:10473981/35‑1 (MQ=255)
               tCGAAAACTCTGCTGGCTGTAATGTTGACCTCTGc             <  1:4315575/35‑1 (MQ=255)
               tCGAAAACTCTGCTGGCTGTAATGTTGACCTCTGc             <  1:11504782/35‑1 (MQ=255)
               tCGAAAACTCTGCTGGCTGTAATGTTGACCTCTGc             <  1:19153715/35‑1 (MQ=255)
               tCGAAAACTCTGCTGGCTGTAATGTTGACCTCTGc             <  1:17828693/35‑1 (MQ=255)
               tCGAAAACTCTGCTGGCTGTAATGTTGACCTCTGc             <  1:144406/35‑1 (MQ=255)
                cGAAAACTCTGCTGGCTGTAATGTTGACCTCTGcc            <  1:3521614/35‑1 (MQ=255)
                cGAAAACTCTGCTGGCTGTAATGTTGACCTCTGcc            <  1:7887023/35‑1 (MQ=255)
                cGAAAACTCTGCTGGCTGTAATGTTGACCTCTGcc            <  1:15761251/35‑1 (MQ=255)
                 gAAAACTCTGCTGGCTGTAATGTTGACCTCTGCCg           <  1:19356847/35‑1 (MQ=255)
                 gAAAACTCTGCTGGCTGTAATGTTGACCTCTGCCg           <  1:14120680/35‑1 (MQ=255)
                 gAAAACTCTGCTGGCTGTAATGTTGACCTCTGCCg           <  1:16526555/35‑1 (MQ=255)
                  aaaaCTCTGCTGGCTGTAATGTTGACCTCTGCCGt          <  1:9393165/35‑1 (MQ=255)
                  aaaaCTCTGCTGGCTGTAATGTTGACCTCTGCCGt          <  1:2850310/35‑1 (MQ=255)
                   aaaCTCTGCTGGCTGTAATGTTGACCTCTGCCGTc         <  1:13961630/35‑1 (MQ=255)
                   aaaCTCTGCTGGCTGTAATGTTGACCTCTGCCGTc         <  1:10994496/35‑1 (MQ=255)
                      ctctGCTGGCTGTAATGTTGACCTCTGCCGTcgcg      <  1:3016613/35‑1 (MQ=255)
                       tctGCTGGCTGTAATGTTGACCTCTGCCGTCGCGa     <  1:7619254/35‑1 (MQ=255)
                       tctGCTGGCTGTAATGTTGACCTCTGCCGTCGCGa     <  1:3736776/35‑1 (MQ=255)
                         tgctgGCTGTAATGTTGACCTCTGCCGTCGCGAcc   <  1:15001823/35‑1 (MQ=255)
                         tgctgGCTGTAATGTTGACCTCTGCCGTCGCGAcc   <  1:12319419/35‑1 (MQ=255)
                         tgctgGCTGTAATGTTGACCTCTGCCGTCGCGAcc   <  1:8846103/35‑1 (MQ=255)
                         tgctgGCTGTAATGTTGACCTCTGCCGTCGCGAcc   <  1:9363099/35‑1 (MQ=255)
                          gctggctgTAATGTTGACCTCTGCCGTCGCGACCg  <  1:14826351/35‑1 (MQ=255)
                          gctggctgTAATGTTGACCTCTGCCGTCGCGACCg  <  1:18829323/35‑1 (MQ=255)
                          gctggctgTAATGTTGACCTCTGCCGTCGCGACCg  <  1:8704476/35‑1 (MQ=255)
                          |                                  
ACAAGACTGAAGATTTCGAAAACTCTGCTGGCTGTAATGTTGACCTCTGCCGTCGCGACCG  >  REL606/4600639‑4600699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.