New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422594 =77 (0.750)21 (0.230) 4/42 NT 25.6% intergenic (‑281/+181) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter
?REL606 2573117 = 55 (0.610)intergenic (‑11/‑196) yfhM/sseA hypothetical protein/3‑mercaptopyruvate sulfurtransferase

TACACGATTCAGCTAATGAGTCTTTATTTTCCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/422630‑422594
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccTGCCACAATGGCCCGTTAGCAACGTCGAATAATT  >  REL606/2573117‑2573150
                                                                       
TACACGATTCAGCTAATGAGTCTTTATTTTCCCCC                                      >  1:10373719/1‑35
TACACGATTCAGCTAATGAGTCTTTATTTTCCCCC                                      >  1:16554410/1‑35
TACACGATTCAGCTAATGAGTCTTTATTTTCCCCC                                      >  1:12286934/1‑35
TACACGATTCAGCTAATGAGTCTTTATTTTCCCCC                                      >  1:5136536/1‑35
TACACGATTCAGCTAATGAGTCTTTATTTTCCCCC                                      >  1:18867935/1‑35
 ACACGATTCAGCTAATGAGTCTTTATTTTCCCCCC                                     >  1:16396887/1‑35
 ACACGATTCAGCTAATGAGTCTTTATTTTCCCCCC                                     >  1:15030574/1‑35
  CACGATTCAGCTAATGAGTCTTTATTTTCCCCCCC                                    <  1:10450871/35‑1
  CACGATTCAGCTAATGAGTCTTTATTTTCCCCCCC                                    >  1:16010835/1‑35
  CACGATTCAGCTAATGAGTCTTTATTTTCCCCCCC                                    >  1:14960083/1‑35
  CACGATTCAGCTAATGAGTCTTTATTTTCCCCCCC                                    >  1:14734305/1‑35
                     tTTTATTTTCCCCCCCTGCCACAATGGCCCGTTAG                 <  1:5540532/34‑1
                      ttcATTTTCCCCCCCTGCCACAATGGCCCGTTAGC                <  1:6866884/32‑1
                      ttcATTTTCCCCCCCTGCCACAATGGCCCGTTAGC                <  1:13859741/32‑1
                      TTTATTTTCCCCCCCTGCCACAATGGCCCGTTAGC                <  1:2281270/35‑1
                       tctTTTTCCCCCCCTGCCACAATGGCCCGTTAGCA               <  1:6294266/32‑1
                        ctTTTTCCCCCCCTGCCACAATGGCCCGTTAGCAA              <  1:13615835/33‑1
                        TATTTTCCCCCCCTGCCACAATGGCCCGTTAGCAA              <  1:1797939/35‑1
                         tTTTTTCCCCCCTGCCACAATGGCCCGTTAGCAAC             <  1:16331051/34‑1
                         tTTTTCCCCCCCTGCCACAATGGTCCGTTAGCAAC             <  1:13895088/34‑1
                         tTTTTCCCCCCCTGCCACAATGGCCCGTTAGCAAC             <  1:17456784/34‑1
                           ttcCCCCCCCTGCCACAATGGCCCGTTAGCAACGT           <  1:8684239/32‑1
                           TTTTCCCCCCTGCCACAATGGCCCGTTAGCAACGT           <  1:11603582/35‑1
                           TTTCCCCCCCTGCCACAATGGCCCGTTAGCAACGT           <  1:8911054/35‑1
                           TTTCCCCCCCTGCCACAATGGCCCGTTAGCAACGT           <  1:11643754/35‑1
                           TTTCCCCCCCTGCCACAATGGCCCGTTAGCAACGT           <  1:14088975/35‑1
                           TTTCCCCCCCTGCCACAATGGCCCGTTAGCAACGT           <  1:102746/35‑1
                            tcCCCCCCCTGCCACAATGGCCCGTTAGCAACGTC          <  1:3203913/33‑1
                            TTCCCCCCCTGCCACAATGGCCCGTTAGCAACGTC          <  1:13576837/35‑1
                            TTCCCCCCCTGCCACAATGGCCCGTTAGCAACGTC          <  1:8569826/35‑1
                            TTCCCCCCCTGCCACAATGGCCCGTTAGCAACGTC          <  1:1842392/35‑1
                            TTCCCCCCCTGCCACAATGGCCCGTTAGCAACGTC          <  1:2219858/35‑1
                            TTCCCCCCCTGCCACAATGGCCCGTTAGCAACGTC          <  1:2438790/35‑1
                            TTCCCCCCCTGCCACAAGGGCCCGTTAGCAACGTC          <  1:17686798/35‑1
                             cCCCCCCCTGCCACAATGGCCCGTTAGCAACGTCG         <  1:16525023/34‑1
                              tCCCCCCTGCCACAATGGCCCGTTAGCAACGTCGA        <  1:4353793/34‑1
                              CCCCCCCTGCCACAATGGCCCGTTAGCAACGTCGA        <  1:13066548/35‑1
                               CCCCCCTGCCACAATGGCCCGTTAGCAACGTCGAA       <  1:9289387/35‑1
                                aCCCCTGCCAAAATGGCCCGTTAGCAACGTCGAAT      <  1:6221520/34‑1
                                CCCCCTGCCACAATGGCCCGTTAGCAACGTCGAAT      <  1:1376797/35‑1
                                 CCCCTGCCACAATGGCCCGTTAGCAACGTCGAATA     <  1:7448511/35‑1
                                  CCCTGCCACAATGGCCCGTTAGCAACGTCGAATAA    <  1:10997674/35‑1
                                  CCCTGCCACAATGGCCCGTTAGCAACGTCGAATAA    <  1:9400693/35‑1
                                  CCCTGCCACAATGGCCCGTTAGCAACGTCGAATAA    <  1:7852538/35‑1
                                  CCCTGCCACAATGGCCCGTTAGCAACGTCGAATAA    >  1:11303404/1‑35
                                  CCCTGCCACAATGGCCCGTTAGCAACGTCGAATAA    >  1:5074328/1‑35
                                  CCCCGCCACAATGGCCCGTTAGCAACGTCGAATAA    <  1:9242758/35‑1
                                   CCTGCCACAATGGCCCGTTAGCAACGTCGAATAAT   >  1:627511/1‑35
                                   CCTGCCACAATGGCCCGTTAGCAACGTCGAATAAT   <  1:3242126/35‑1
                                   CCTGCCACAATGGCCCGTTAGCAACGTCGAATAAT   >  1:20172555/1‑35
                                   CCTGCCACAATGGCCCGTTAGCAACGTCGAATAAT   <  1:18247369/35‑1
                                    CTGCCACAATGGCCCGTTAGCAACGTCGAATAATT  >  1:5218254/1‑35
                                    CTGCCACAATGGCCCGTTAGCAACGTCGAATAATT  >  1:5203228/1‑35
                                    CTGCCACAATGGCCCGTTAGCAACGTCGAATAATT  <  1:7529638/35‑1
                                    CTGCCACAATGGCCCGTTAGCAACGTCGAATAATT  >  1:2893837/1‑35
                                    CTGCCACAATGGCCCGTTAGCAACGTCGAATAATT  >  1:225289/1‑35
                                                                       
TACACGATTCAGCTAATGAGTCTTTATTTTCCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/422630‑422594
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccTGCCACAATGGCCCGTTAGCAACGTCGAATAATT  >  REL606/2573117‑2573150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.