New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 947579 = | 44 (0.430) | 9 (0.090) | 4/46 | NT | 13.7% | coding (442/1767 nt) | cydD | fused cysteine transporter subunits of ABC superfamily: membrane component/ATP‑binding component |
? | REL606 | = 3484563 | 71 (0.720) | coding (887/1017 nt) | rtcA | RNA 3'‑terminal‑phosphate cyclase |
AAGATCGCCACCACAATCAGCAACGGCACCGACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAG > REL606/947545‑947613 | catgagggatgggcgaccgtaaattcccccgcgcc < 1:8169128‑M1/1‑1 (MQ=255) catgagggatgggcgaccgtaaattcccccgcgcc > 1:16528948‑M1/35‑35 (MQ=255) catgagggatgggcgaccgtaaattcccccgcgcc < 1:14568140‑M1/1‑1 (MQ=255) aaGATCGCCACCACAATCAGCAACGGCACCGacac > 1:931229/1‑35 (MQ=255) aaGATCGCCACCACAATCAGCAACGGCACCGacac > 1:20310859/1‑35 (MQ=255) aaGATCGCCACCACAATCAGCAACGGCACCGacac > 1:8595591/1‑35 (MQ=255) aGATCGCCACCACAATCAGCAACGGCACCGACACt > 1:16683239/1‑35 (MQ=255) gATCGCCACCACAATCAGCAACGGCACCGACACTg > 1:19168901/1‑35 (MQ=255) gATCGCCACCACAATCAGCAACGGCACCGACACTg > 1:4967135/1‑35 (MQ=255) aTCGCCACCACAATCAGCAACGGCACCGACACTGc > 1:7280413/1‑35 (MQ=255) aTCGCCACCACAATCAGCAACGGCACCGACACTGc > 1:12555882/1‑35 (MQ=255) cGCCACCACAATCAGCAACGGCACCGACACTGCCa > 1:16994887/1‑35 (MQ=255) gCCACCACAATCAGCAACGGCACCGACACTGCCAg > 1:12776274/1‑35 (MQ=255) gCCACCACAATCAGCAACGGCACCGACACTGCCAg > 1:4277658/1‑35 (MQ=255) ccaccaCAATCAGCAACGTCACCGACACTGCCAgc > 1:4693268/1‑35 (MQ=255) caccacAATCAGCAACGGCACCGACACTGCCAgcg > 1:14604049/1‑35 (MQ=255) caccacAATCAGCAACGGCACCGACACTGCCAgcg > 1:10367325/1‑35 (MQ=255) accacAATCAGCAACGGCACCGACACTGCCAgcgc > 1:16707802/1‑35 (MQ=255) accacAATCAGCAACGGCACCGACACTGCCAgcgc > 1:2844651/1‑35 (MQ=255) ccacAATCAGCAACGGCACCGACACTGCCAGCGcc > 1:17615611/1‑35 (MQ=255) cacaATCAGCAACGGCACCGACACTGCCAGCGCCa > 1:5287539/1‑35 (MQ=255) cacaATCAGCAACGGCACCGACACTGCCAGCGCCa > 1:11371862/1‑35 (MQ=255) cacaAACAGCAACGGCACCGACACTGCCAGCGCCa > 1:1764282/1‑35 (MQ=255) acaATCAGCAACGGCACCGACACTGCCAGCGCCAt > 1:3697900/1‑35 (MQ=255) acaATCAGCAACGGCACCGACACTGCCAGCGCCAt > 1:18561090/1‑35 (MQ=255) caATCAGCAACGGCACCGACACTGCCAGCGCCAtt > 1:3387118/1‑35 (MQ=255) caATCAGCAACGGCACCGACACTGCCAGCGCCAtt > 1:16087260/1‑35 (MQ=255) caATCAGCAACGGCACCGACACTGCCAGCGCCAtt > 1:4433532/1‑35 (MQ=255) aaTCAGCAACGGCACCGACACTGCCAGCGCCAttt > 1:3652151/1‑35 (MQ=255) aaTCAGCAACGGCACCGACACTGCCAGCGCCAttt > 1:18368194/1‑35 (MQ=255) aaTCAGCAACGGCACCGACACTGCCAGCGCCAttt > 1:6547807/1‑35 (MQ=255) aTCAGCAACGGCACCGACACTGCCAGCGCCATTTg > 1:3162495/1‑35 (MQ=255) tCAGCAACGGCACCGACACTGCCAGCGCGATTTGc > 1:18469694/1‑35 (MQ=255) tCAGCAACGGCACCGACACTGCCAGCGCCATTTGc > 1:13473330/1‑35 (MQ=255) cAGCAACGGCACCTACACTGCCAGCGCCATTTTCg > 1:20439184/1‑35 (MQ=37) aGCAACGGCACCGACACTGCCAGCGCCATTTGCgg > 1:6758167/1‑35 (MQ=255) aGCAACGGCACCGACACTGCCAGCGCCATTTGCgg > 1:13042985/1‑35 (MQ=255) gCAACGGCACCGACACTGCCAGCGCCATTTGCGGc > 1:17596882/1‑35 (MQ=255) gCAACGGCACCGACACTGCCAGCGCCATTTGCGGc > 1:14309809/1‑35 (MQ=255) cAACGGCACCGACACTGCCAGCGCCATTTGCGGCa > 1:6609457/1‑35 (MQ=255) aaCGGCACCGACACTGCCAGCGCCATTTGCTGCAg > 1:14629027/1‑35 (MQ=255) aaCGGCACCGACACTGCCAGCGCCATTTGCGGCAn > 1:6727458/1‑35 (MQ=255) aaCGGCACCGACACTGCCAGCGCCATTTGCGGCAg > 1:10133200/1‑35 (MQ=255) aaCGGCACCGACACTGCCAGCGCCATTTGCGGCAg > 1:13685229/1‑35 (MQ=255) aCGGCACCGACACTGCCAGCGCCATTTGCGGCAGa > 1:2003959/1‑35 (MQ=255) cGGCACCGACACTGCCAGCGCCATTTGCGGCAGAt > 1:13370617/1‑35 (MQ=255) cGGCACCGACACTGCCAGCGCCATTTGCGGCAGAt > 1:14197196/1‑35 (MQ=255) ggCACCGACACTGCCAGCGCCATTTGCGGCAGaaa > 1:3118928/1‑33 (MQ=255) cccccgcccCTGCCAGCGCCATTTGCGGCAGATAg > 1:8142361‑M1/10‑35 (MQ=255) ccccgcccCTGCCAGCGCCATTTGCGGCAGATAGc > 1:7955494‑M1/9‑35 (MQ=255) ccccgcccCTGCCAGCGCCATTTGCGGCAGATAGc > 1:7841236‑M1/9‑35 (MQ=255) ccccgcccCTGCCAGCGCCATTTGCGGCAGATAGc > 1:85370‑M1/9‑35 (MQ=255) cACCGACACTGCCAGCGCCATTTGCGGCAGATAGc > 1:15809860/1‑35 (MQ=255) cccgcccCTGCCAGCGCCATTTGCGGCAGATAGCg > 1:8993110‑M1/8‑35 (MQ=255) cccgcccCTGCCAGCGCCATTTGCGGCAGATAGCg > 1:12936375‑M1/8‑35 (MQ=255) aCCGACACTGCCAGCGCCATTTGCGGCAGATAGCg > 1:15275200/1‑35 (MQ=255) ccgcccCTGCCAGCGCCATTTGCGGCAGATAGCGt > 1:7857771‑M1/7‑35 (MQ=255) ccgcccCTGCCAGCGCCATTTGCGGCAGATAGCGt > 1:15586514‑M1/7‑35 (MQ=255) ccgcccCTGCCAGCGCCATTTGCGGCAGATAGCGt > 1:15578649‑M1/7‑35 (MQ=255) ccGACCCTGCCAGCGCCATTTGCGGCAGATAGCGt < 1:18077833/35‑1 (MQ=255) ccGACCCTGCCAGCGCCATTTGCGGCAGATAGCGt < 1:7742593/35‑1 (MQ=255) ccGACACTTCCAGCGCCATTTGCGGCAGATAGCGt > 1:7214187/1‑35 (MQ=255) ccGACACTGCCAGCGCCATTTGCGGCAGATAGCGt > 1:13018773/1‑35 (MQ=255) ccGACACTGCCAGCGCCATTTGCGGCAGATAGCGt < 1:19596032/35‑1 (MQ=255) cgcccCTGCCAGCGCCATTTGCGGCAGATAGCGTg > 1:12107323‑M1/6‑35 (MQ=255) cGACAGTGCCAGCGCCATTTGCGGCAGATAGCGTg < 1:2645011/35‑1 (MQ=255) cGACACTGCCAGCGCCATTTGCGGCAGGTAGCggg > 1:1584679/1‑33 (MQ=37) gACACTGCCAGCGCCATTTGCGGCAGATAGCgaaa > 1:8159217/1‑32 (MQ=255) gACACTGCCAGCGCCATTTGCGGCAGATAGCGTGc > 1:8321560/1‑35 (MQ=255) gACACTGCCAGCGCCATTTGCGGCAGATAGCGTGc > 1:13022726/1‑35 (MQ=255) gACACTGCCAGCGCCATTTGCGGCAGATAGCGCGc > 1:20362634/1‑35 (MQ=255) acccCTGCCAGCGCCATTTGCGGCAGATAGCGTGc > 1:1819377‑M1/5‑35 (MQ=255) acccCTGCCAGCGCCATTTGCGGCAGATAGCGTGc > 1:19333036‑M1/5‑35 (MQ=255) cccCTGCCAGCGCCATTTGCGGCAGATAGCGTGCa > 1:8337776‑M1/4‑35 (MQ=255) ccCTGCCAGCGCCATTTGCGGCAGATAGCGTGCAt > 1:434466‑M1/3‑35 (MQ=255) ccCTGCCAGCGCCATTTGCGGCAGATAGCGTGCAt > 1:7648641‑M1/3‑35 (MQ=255) cacTGCCAGCGCCATTTGCGTCAGATAGCGTGCAt > 1:13093871/1‑35 (MQ=255) cacTGCCAGCGCCATTTGCGTCAGATAGCGTGCAt > 1:17205814/1‑35 (MQ=255) cacTGCCAGCGCCATTTGCGGCAGATAGCGTGCAt > 1:11607789/1‑35 (MQ=255) cacTGCCAGCGCCATTTGCGGCAGATAGCGTGCAt > 1:8268081/1‑35 (MQ=255) cacTGCCAGCGCCATTTGCGGCAGATAGCGTGCAt > 1:19496767/1‑35 (MQ=255) cacTGCCAGCGCCATTTGCGGCAGATAGCGTGCAt > 1:20308992/1‑35 (MQ=255) cCTGCCAGCGCCATTTGCGGCAGATAGCGTGCATa > 1:4216318‑M1/2‑35 (MQ=255) cCTGCCAGCGCCATTTGCGGCAGATAGCGTGCATa > 1:2862917‑M1/2‑35 (MQ=255) cCTGCCAGCGCCATTTGCGGCAGATAGCGTGCATa > 1:2678884‑M1/2‑35 (MQ=255) acTGCCAGCGCCATTTGCGGCAGATAGCGCGCATa > 1:1212766/1‑35 (MQ=255) CTGCCAGCGCCATTTGCGGCGGATAGCGTGCATAg > 1:4780053‑M1/1‑35 (MQ=255) CTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAg < 1:6544011‑M1/35‑1 (MQ=255) CTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAg > 1:13163040‑M1/1‑35 (MQ=255) CTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAg < 1:1457965‑M1/35‑1 (MQ=255) | AAGATCGCCACCACAATCAGCAACGGCACCGACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAG > REL606/947545‑947613 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |