New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1500892 =NA (NA)5 (0.060) 3/36 NT 12.2% coding (616/4224 nt) rhsE rhsE element core protein RshE
?REL606 = 1977657 48 (0.470)coding (181/1005 nt) yedY hypothetical protein

Only 100 of 125 total aligned reads displayed.

GTTTAAAGGGAACGATCGCCCACCCGCCCCCGCCGGAAAACCGCTGGAGTTCAGCAAGCCTGCCGCCTG  >  REL606/1977623‑1977691
                                  |                                  
gTTTAAAGGGAACGATCGCCCACCCGCCCCCGCCG                                    <  1:7733453‑M2/35‑1 (MQ=255)
 tttAAAGGGAACGATCGCCCACCCGCCCCCGCCgg                                   >  1:4801922/1‑35 (MQ=255)
 tttAAAGGGAACGATCGCCCACCCGCCCCCGCCgg                                   >  1:188759/1‑35 (MQ=255)
 cttAAAGGGAACGATCGCCCACCCGCCCCCGCCgg                                   <  1:11127394/34‑1 (MQ=255)
   tAAAGGGAACGATCGCCCACCCGCCCCCGCCGGaa                                 >  1:19075598/1‑35 (MQ=255)
    aaaGGGAACGATCGCCCACCCGCCCCCGCCGGaaa                                >  1:12004081/1‑35 (MQ=255)
    aaaGGGAACGATCGCCCACCCGCCCCCGCCGCaaa                                >  1:3679858/1‑35 (MQ=255)
     aaGGGAACGATCGCCCACCCGCCCCCGCCGGaaaa                               >  1:11187714/1‑35 (MQ=255)
     aaGGGAACGATCGCCCACACGCCCCCGCCGGaaaa                               <  1:10086738/35‑1 (MQ=255)
          aaCGATCGCCCACCCGCCCCCGCCGGAAAACCGCt                          >  1:10079637/1‑35 (MQ=255)
           actaTCGCCCACCCGCCCCCGCCGGAAAACCGCTg                         >  1:11422756/4‑35 (MQ=255)
           aCGATCGCCCACCCGCCCCCGCCGGAAAACCGCTg                         >  1:18255328/1‑35 (MQ=255)
            cGATCGCCCACCCGCCCCCGCCGGAAAACCGCTgg                        >  1:8314971/1‑35 (MQ=255)
            cGATCGCCCACCCGCCCCCGCCGGAAAACCGCTgg                        >  1:3358538/1‑35 (MQ=255)
            cGATCGCCCACCCGCCCCCGCCGGAAAACCGCTgg                        >  1:2196236/1‑35 (MQ=255)
            cGATCGCCCACCCGCCCCCGCCGGAAAACCGCTgg                        >  1:1246314/1‑35 (MQ=255)
             gATCGCCCACCCGCCCCCGCCGGAAAACCGCTGGa                       >  1:9560520/1‑35 (MQ=255)
               tcccccCCCCGCCCCCGCCGGAAAACCGCTGGAGt                     <  1:5005203/32‑1 (MQ=25)
               tCGCCCACCCGCCCCCGCCGGAAAACCGCTGGAGt                     >  1:20447359/1‑35 (MQ=255)
               tCGCCCACCCGCCCCCGCCGGAAAACCGCTGGAGt                     >  1:2237057/1‑35 (MQ=255)
               tCGCCCACCCGCCCCCGCCGGAAAACCGCTGGAGt                     >  1:691137/1‑35 (MQ=255)
                cccccCCCCGCCCCCGCCGGAAAACCGCTGGAGtt                    <  1:1147417/33‑1 (MQ=37)
                cccccCCCCGCCCCCGCCGGAAAACCGCTGGAGtt                    <  1:17177840/33‑1 (MQ=37)
                 gCCCACCCGCCCCCGCCGGAACACAGCTGGAGTTc                   >  1:150421/1‑35 (MQ=37)
                 gCCCACCCGCCCCCGCCGGAAAACCGCTTGAGTTc                   >  1:3998707/1‑35 (MQ=255)
                 gCCCACCCGCCCCCGCCGGAAAACCGCTGGAGTTc                   >  1:14786719/1‑35 (MQ=255)
                  cccCCCCGCCCCCGCCGtaccgggtgcttaccggg                  >  1:9839778‑M2/1‑17 (MQ=255)
                  cccCCCCCCCCCCGCCGGAAAACCGCTGGAGTTCa                  <  1:17928483/35‑1 (MQ=25)
                  cccACCCGCCCCCGCCGGAAAACCGCTGGAGTTCa                  >  1:13067253/1‑35 (MQ=255)
                   ccACCCGCCCCCGCCGGAAAACCGCTGGAGTTCAg                 >  1:17592480/1‑35 (MQ=255)
                   ccACCCGCCCCCGCCGGAAAACCGCTGGAGTTCAg                 >  1:5405177/1‑35 (MQ=255)
                    gccccccccccgccGGTAAGCCGCAGGATTTCAgg                <  1:19979009/33‑2 (MQ=21)
                    cccccgcccccgccGGAAAACCGCTGGAGTTCAGc                <  1:15622576/33‑1 (MQ=255)
                    cACCCGCCCCCGCCGGAAAACCGCTGGAGTTCAGc                >  1:1036984/1‑35 (MQ=255)
                     ccccccccccgccgtaccgggtgcttaccgggctg               >  1:17415119‑M2/2‑14 (MQ=255)
                     aCCCGCCCCCGCCGGAAAACCGCTGGAGTTCAGCa               >  1:17006453/1‑35 (MQ=255)
                     aCCCGCCCCCGCCGGAAAACCGCTGGAGTTCAGCa               >  1:6499680/1‑35 (MQ=255)
                      cccgcccccgccGGAAAACCGCTGGAGTTCAGCaa              <  1:20173378/35‑1 (MQ=255)
                      cccgcccccgccGGAAAACCGCTGGAGTTCAGCaa              <  1:13093896/35‑1 (MQ=255)
                       ccgcccccgccGGAAAACCGCTGGAGTTCAGCAAg             >  1:15517545/1‑35 (MQ=255)
                       ccccccccgccGtaccgggtgcttaccgggctggc             >  1:16523565‑M2/1‑12 (MQ=255)
                       ccccccccgccGtaccgggtgcttaccgggctggc             >  1:13077526‑M2/1‑12 (MQ=255)
                        cgcccccgccGGAAAACCGCTGGAGTTCAGCAAGc            <  1:11706789/35‑1 (MQ=255)
                         ccccccgccgtgccgggtgcttaccgggctggcag           >  1:6093629‑M2/2‑10 (MQ=255)
                         ccccccgccgtaccgggtgcttaccgggctggcag           >  1:9427694‑M2/2‑10 (MQ=255)
                         ccccccgccgtaccgggtgcttaccgggctggcag           >  1:11069850‑M2/2‑10 (MQ=255)
                         ccccccgccGGAAAACCGCTGGAGTTCAGCAAGcc           <  1:5384513/34‑1 (MQ=255)
                          cccccgccGtaccgggtgcttaccgggctggcaga          >  1:8604085‑M2/1‑9 (MQ=255)
                          cccccgccGtaccgggtgcttaccgggctggcaga          >  1:11863092‑M2/1‑9 (MQ=255)
                          cccccgccGGAAAACCGCTGGAGTTCAGCAAGCCt          <  1:8899802/35‑1 (MQ=255)
                          cccccgccGGAAAACCGCTGGAGTTCAGCAAGCCt          <  1:8878514/35‑1 (MQ=255)
                           ccccgccGGAAAACCGCTGGAGTTCAGCAAGCCTg         <  1:20234555/35‑1 (MQ=255)
                           ccccgccGGAAAACCGCTGGAGTTCAGCAAGCCTg         >  1:13524584/1‑35 (MQ=255)
                           cccccccGGAAACCCGCTGGAGTTCAGCAAGCCTg         <  1:18114222/35‑1 (MQ=37)
                            cccgccGtaccgggtgcttaccgggctggcagacc        >  1:811841‑M2/1‑7 (MQ=255)
                            cccgccGtaccgggtgcttaccgggctggcagacc        >  1:11486651‑M2/1‑7 (MQ=255)
                            cccgccGtaccgggtgcttaccgggctggcagacc        >  1:2302599‑M2/1‑7 (MQ=255)
                            cccgccGtaccgggtgcttaccgggctggcagacc        >  1:9127478‑M2/1‑7 (MQ=255)
                            cccgccGtaccgggtgcttaccgggctggcagacc        >  1:16134047‑M2/1‑7 (MQ=255)
                            cccgccGtaccgggtgcttaccgggctggcagacc        >  1:4603775‑M2/1‑7 (MQ=255)
                            cccgccGGAAAACCGCTGGAGTTCAGCAAGCCTgc        >  1:14795048/1‑35 (MQ=255)
                            cccgccGGAAAACCGCTGGAGTTCAGCAAGCCTgc        >  1:12518691/1‑35 (MQ=255)
                            cccgccGAAAACCCGCTGGAGTTCAGCAAGCCTgc        <  1:9817807/35‑1 (MQ=37)
                             ccgccgtaccgggtgcttaccgggctggccgaccg       <  1:16442327‑M2/35‑30 (MQ=255)
                             ccgccgAAAACCCGCTGGAGTTCAGCAAGCCTgcc       <  1:7640440/35‑1 (MQ=37)
                              cgccgtaccgggtgcttaccgggctggcagaccgt      >  1:20309879‑M2/1‑5 (MQ=255)
                              cgccgtaccgggtgcttaccgggctggcagaccgt      <  1:6694488‑M2/35‑31 (MQ=255)
                               gccttaccgggtgcttaccgggctggcagaccgtt     >  1:17514070‑M2/1‑4 (MQ=255)
                               gccgtaccgggtgcttaccgggctggcagaccgtt     <  1:12658480‑M2/35‑32 (MQ=255)
                               gccgtaccgggtgcttaccgggctggcagaccgtt     >  1:7561415‑M2/1‑4 (MQ=255)
                               gccgtaccgggtgcttaccgggctggcagaccgtt     <  1:12792917‑M2/35‑32 (MQ=255)
                               gccgtaccgggtgcttaccgggctggcagaccgtt     >  1:13047564‑M2/1‑4 (MQ=255)
                               gccgtaccgggtgcttaccgggctggcagaccgtt     >  1:13329229‑M2/1‑4 (MQ=255)
                               gccgtaccgggtgcttaccgggctggcagaccgtt     <  1:57241‑M2/35‑32 (MQ=255)
                               gccgtaccgggtgcttaccgggctggcagaccgtt     >  1:14554192‑M2/1‑4 (MQ=255)
                               gccgtaccgggtgcttaccgggctggcagaccgtt     >  1:15397990‑M2/1‑4 (MQ=255)
                               gccgtaccgggtgcttaccgggctggcagaccgtt     <  1:16744474‑M2/35‑32 (MQ=255)
                               gccgtaccgggtgcttaccgggctggcagaccgtt     >  1:11408079‑M2/1‑4 (MQ=255)
                               gccgGAAAACCGCTGGAGTTCAGCAAGCCTgccgc     >  1:17040408/1‑35 (MQ=255)
                               gccgGAAAACCGCTGGAGTTCAGCAAGCCTgccgc     >  1:17886113/1‑35 (MQ=255)
                               cccgtaccgggtgcttaccgggctggcagaccgtt     >  1:18675272‑M2/2‑4 (MQ=255)
                                ccgtaccgggtgcttaccgggctggcagaccgttt    <  1:14083865‑M2/35‑33 (MQ=255)
                                ccgtaccgggtgcttaccgggctggcagaccgttt    >  1:9228907‑M2/1‑3 (MQ=255)
                                ccgtaccgggtgcttaccgggctggcagaccgttt    <  1:9158137‑M2/35‑33 (MQ=255)
                                 cgtaccgggtgcttaccgggctggcagaccgtttc   >  1:9479995‑M2/1‑2 (MQ=255)
                                 cgtaccgggtgcttaccgggctggcagaccgtttc   >  1:848565‑M2/1‑2 (MQ=255)
                                 cgtaccgggtgcttaccgggctggcagaccgtttc   >  1:9885083‑M2/1‑2 (MQ=255)
                                 cgtaccgggtgcttaccgggctggcagaccgtttc   <  1:8125076‑M2/35‑34 (MQ=255)
                                 cgtaccgggtgcttaccgggctggcagaccgtttc   <  1:5595042‑M2/35‑34 (MQ=255)
                                 cgtaccgggtgcttaccgggctggcagaccgtttc   <  1:17271040‑M2/35‑34 (MQ=255)
                                 cgtaccgggtgcttaccgggctggcagaccgcttc   <  1:17933636‑M2/35‑34 (MQ=255)
                                 cgGAAAACCGCTGGAGTTCAGCAAGCCTGCCGCCt   >  1:176339/1‑35 (MQ=255)
                                 cgGAAAACCGCTGGAGTTCAGCAAGCCTGCCGCCt   >  1:11091837/1‑35 (MQ=255)
                                  gtaccgggtgcttaccgggctggcagaccgtttcg  <  1:4801756‑M2/35‑35 (MQ=255)
                                  gtaccgggtgcttaccgggctggcagaccgtttcg  <  1:3487501‑M2/35‑35 (MQ=255)
                                  gtaccgggtgcttaccgggctggcagaccgtttcg  <  1:14675201‑M2/35‑35 (MQ=255)
                                  gtaccgggtgcttaccgggctggcagaccgtttcg  <  1:12013986‑M2/35‑35 (MQ=255)
                                  gtaccgggtgcttaccgggctggcagaccgtttcg  <  1:10089946‑M2/35‑35 (MQ=255)
                                  ggAAACCCGCTGGAGTTCAGCAAGCCTGCCGCCTg  <  1:7431144/35‑1 (MQ=255)
                                  ggAAAACCGCTGGAGTTCAGCAAGCCTGCCGCCTg  >  1:15866227/1‑35 (MQ=255)
                                  |                                  
GTTTAAAGGGAACGATCGCCCACCCGCCCCCGCCGGAAAACCGCTGGAGTTCAGCAAGCCTGCCGCCTG  >  REL606/1977623‑1977691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.