New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3476747 =59 (0.570)10 (0.120) 3/38 NT 12.0% coding (1924/2085 nt) malQ 4‑alpha‑glucanotransferase (amylomaltase)
?REL606 4031309 = 100 (1.230)coding (968/1374 nt) hemN coproporphyrinogen III oxidase

Only 100 of 215 total aligned reads displayed.

GCTACACCACTCAGGGCGATACCGATCTGCTGGGGATGGGCGTTTCCGCCATCAGCATGATTGGCGAC  >  REL606/4031276‑4031343
                                 |                                  
gCTACACCACTCAGGGCTATACCGATCTGCTgggg                                   >  1:10994367/1‑35 (MQ=255)
gCTACACCACTCAGGGCGATACCGATCTGCTgggg                                   >  1:17542070/1‑35 (MQ=255)
gCTACACCACTCAGGGCGATACCGATCTGCTgggg                                   >  1:2394196/1‑35 (MQ=255)
gCTACACCACTCAGGGCGATACCGATCTGCTgggg                                   >  1:10700461/1‑35 (MQ=255)
 tctgttagggctacagccggaagactggctggGGa                                  >  1:20467125‑M2/33‑35 (MQ=255)
 cTACACCACTCAGGGCGATACCGATCTGCTgggta                                  >  1:16960035/1‑33 (MQ=255)
 cTACACCACTCAGGGCGATACCGATCTGCTGGGGa                                  >  1:3377318/1‑35 (MQ=255)
 cTACACCACTCAGGGCGATACCGATCTGCTGGGGa                                  >  1:10867579/1‑35 (MQ=255)
  tACACCACTCAGGGCGATACCGATCTGCTGGGGAt                                 <  1:9518508/35‑1 (MQ=255)
  tACACCACTCAGGGCGATACCGATCTGCTGGGGAt                                 <  1:9701567/35‑1 (MQ=255)
  tACACCACTCAGGGCGATACCGATCTGCTGGGGAt                                 >  1:10842794/1‑35 (MQ=255)
  ctgttaggactacagccggaagactggctggGTAt                                 >  1:15341984‑M2/32‑35 (MQ=255)
   acacCACTCAGGGCGATACCGATCTGCTGGGGATg                                <  1:5926037/35‑1 (MQ=255)
   acacCACTCAGGGCGATACCGATCTGCTGGGGATg                                <  1:18761230/35‑1 (MQ=255)
   acacCACTCAGGGCGATACCGATCTGCTGGGGATg                                <  1:4101025/35‑1 (MQ=255)
   acacCACTCAGGGCGATACCGATCTGCTGGGGATg                                >  1:12455411/1‑35 (MQ=255)
     ttaggactacagccggaagactggctggGGATggg                              >  1:17322102‑M2/29‑35 (MQ=255)
     accacTCAGGGCGATACCGATCTGCTGGGGATggg                              >  1:15639568/1‑35 (MQ=255)
     accacTCAGGGCGATACCGATCTGCTGGGGATggg                              <  1:6709966/35‑1 (MQ=255)
      taggactacagccggaagactggctggGTATGGGc                             >  1:10097268‑M2/28‑35 (MQ=255)
      taggactacagccggaagactggctggGGATGGGc                             >  1:423611‑M2/28‑35 (MQ=255)
      ccacTCAGGGCGATACCGATCTGCTGGGGATGGGc                             >  1:9642553/1‑35 (MQ=255)
      ccacTCAGGGCGATACCGATCTGCTGGGGATGGGc                             <  1:4169640/35‑1 (MQ=255)
      ccacTCAGGGCGATACCGATCTGCTGGGGATGGGc                             >  1:2031363/1‑35 (MQ=255)
       cacTCAGGGCGATACCGATCTGCTGGGGATGGGCg                            <  1:6911302/35‑1 (MQ=255)
       cacTCAGGGCGATACCGATCTGCTGGGGATGGGCg                            >  1:82792/1‑35 (MQ=255)
       cacTCAGGGCGATACCGATCTGCTGGGGATGGGCg                            <  1:17441291/35‑1 (MQ=255)
       cacTCAGGGCGATACCGATCTGCTGCGGATGGGCg                            >  1:9526053/1‑35 (MQ=255)
       cacTCAGGGCGATACAGATCTGCTGGGGATGGGCg                            <  1:11759593/35‑1 (MQ=255)
        ggactacagccggaagactggctggGgatgggggg                           >  1:17677823‑M2/26‑32 (MQ=255)
        ggactacagccggaagactggctggGgatgggagg                           >  1:18985076‑M2/26‑32 (MQ=255)
        acTTAGGGCGATACCGATCTGCTGGGGATGGGCGt                           >  1:2316335/1‑35 (MQ=255)
        acTCAGGGCGATACCGATCTGCTGGGGATGGGCGt                           <  1:10544693/35‑1 (MQ=255)
        acTCAGGGCGATACCGATCTGCTGGGGATGGGCGt                           <  1:14515324/35‑1 (MQ=255)
         cTCAGGGCGATACCGATCTGCTGGTGATGGGCGtt                          >  1:7464834/1‑35 (MQ=255)
         cTCAGGGCGATACCGATCTGCTGGGGATGGGCGtt                          >  1:117160/1‑35 (MQ=255)
           caaggCGATACCGATCTGCTGGGGATGGGCGTTTc                        >  1:10813589/4‑35 (MQ=255)
           cAGGGCGATACCGATCTGCTGGGGATGGGCGTTTc                        <  1:7276591/35‑1 (MQ=255)
           cAGGGCGATACCGATCTGCTGGGGATGGGCGTTTc                        >  1:3001707/1‑35 (MQ=255)
           cAGGGCGATACCGATCTGCTGGGGATGGGCGTTTc                        <  1:1756309/35‑1 (MQ=255)
           cAGGGCGATACCGATCTGCTGGGGATGGGCGTTTc                        >  1:8792024/1‑35 (MQ=255)
            aGGGCGATACCGATCTGCTGGGGATGGGCGTTTcc                       <  1:13790840/35‑1 (MQ=255)
            aGGGCGATACCGATCTGCTGGGGATGGGCGTTTcc                       >  1:10569263/1‑35 (MQ=255)
             gggCGATACCGATCTGCTGGGGATGGGCGTTTCCg                      <  1:2130649/35‑1 (MQ=255)
              ggCGATACCGATCTGCTGGGGATGGGCGTTTCCGc                     <  1:5471627/35‑1 (MQ=255)
              ggCGATACCGATCTGCTGGGGATGGGCGTTTCCGc                     >  1:901461/1‑35 (MQ=255)
              ggCGATACCGATCTGCTGGGGATGGGCGTTTCCGc                     <  1:3538783/35‑1 (MQ=255)
                cGATACCGATCTTCTGGGGATGGGCGTTTCCGCCa                   >  1:19826256/1‑35 (MQ=255)
                cGATACCGATCTGCTGGGGATGGGCGTTTCCGCCa                   >  1:59711/1‑35 (MQ=255)
                cGATACCGATCTGCTGGGGATGGGCGTTTCCGCCa                   >  1:13257479/1‑35 (MQ=255)
                cGATACCGATCTGCTGGGGATGGGCGTTTCCGCCa                   >  1:10231719/1‑35 (MQ=255)
                 gATACCGATCTGCTGGGGATGGGCGTTTCCGCCAt                  >  1:11297422/1‑35 (MQ=255)
                 gATACCGATCTGCTGGGGATGGGCGTTTCCGCCAt                  <  1:5823120/35‑1 (MQ=255)
                 gATACCGATCTGCTGGGGATGGGCGTTTCCGCCAt                  >  1:6228410/1‑35 (MQ=255)
                  atcccGATCTGCTGGGGATGGGCGTTTCCGCCATc                 <  1:18456358/32‑1 (MQ=255)
                  aTACCGATCTGCTGGGGATGGGCGTTTCCGCCATc                 <  1:3449321/35‑1 (MQ=255)
                  aTACCGATCTGCTGGGGATGGGCGTTTCCGCCATc                 <  1:10312547/35‑1 (MQ=255)
                   tACCGATCTGCTGGGGATGGGCGTTTCCGCCATCa                <  1:3904711/35‑1 (MQ=255)
                    aCCGATCTGCTGGGGATGGGCGTTTCCGCCATCAg               <  1:16558567/35‑1 (MQ=255)
                    aCCGATCTGCTGGGGATGGGCGTTTCCGCCATCAg               <  1:16383/35‑1 (MQ=255)
                     ccGATCTGCTGGGGATGGGCGTTTCCGCCATCAGc              >  1:4740941/1‑35 (MQ=255)
                     ccGATCTGCTGGGGATGGGCGTTTCCGCCATCAGc              >  1:7115465/1‑35 (MQ=255)
                     ccGATCTGCTGGGGATGGGCGTTTCCGCCATCAGc              <  1:9844414/35‑1 (MQ=255)
                       gATCTGCTGGGGATGGGCGTTTCCGCCATCAgaga            >  1:18829737/1‑32 (MQ=255)
                       gATCTGCTGGGGATGGGCGTTTCCGCCATCAGCAt            >  1:20116725/1‑35 (MQ=255)
                       gATCTGCTGGGGATGGGCGTTTCCGCCATCAGCAt            >  1:3422144/1‑35 (MQ=255)
                       gATCTGCTGGGGATGGGCGTTTCCGCCATCAGCAt            <  1:19299730/35‑1 (MQ=255)
                       gATCTGCTGGGGATGGGCGTTTCCGCCATCAGCAt            >  1:14617806/1‑35 (MQ=255)
                       gATCTGCTGGGGATGGGCGTTTCCGCCATCAGCAt            <  1:16820448/35‑1 (MQ=255)
                         tCTGCTGGGGATGGGCGTTTCCGCCATCAGCATGa          >  1:3872382/1‑35 (MQ=255)
                         tCTGCTGGGGATGGGCGTTTCCGCCATCAGCATGa          >  1:15862864/1‑35 (MQ=255)
                          ctgctgGGGATGGGCGTTTCCGCCATCAGCATGAt         >  1:240029/1‑35 (MQ=255)
                          ctgctgGGGATGGGCGTTTCCGCCATCAGCATGAt         >  1:2796753/1‑35 (MQ=255)
                          ctgctgGGGATGGGCGTTTCCGCCATCAGCATGAt         <  1:14165038/35‑1 (MQ=255)
                          ctgctgGGGATGGGCGTTTCCGCCATCAGCATGAt         <  1:15124704/35‑1 (MQ=255)
                           tgctgGGGATGGGCGTTTCCGCCATCAGCATGAtt        <  1:10019856/35‑1 (MQ=255)
                           tgctgGGGATGGGCGTTTCCGCCATCAGCATGAtt        <  1:11071532/35‑1 (MQ=255)
                           tgctgGGGATGGGCGTTTCCGCCATCAGCATGAtt        >  1:14363149/1‑35 (MQ=255)
                           tgctgGGGATGGGCGTTTCCGCCATCAGCATGAtt        >  1:16725326/1‑35 (MQ=255)
                           tgctgGGGATGGGCGTTTCCGCCATCAGCATGAtt        <  1:2907108/35‑1 (MQ=255)
                           tgctgGGGATGGGCGTTTCCGCCATCAGCATGAtt        <  1:18476167/35‑1 (MQ=255)
                           tgctgGGGATGGGCGTTTCCGCCATCAGCATGAtt        <  1:177715/35‑1 (MQ=255)
                            gctggGGATGGGCGTTTCCGCCATCAGCATGATTg       <  1:11434616‑M2/30‑1 (MQ=255)
                            gctggGGATGGGCGTTTCCGCCATCAGCATGATTg       <  1:17939576‑M2/30‑1 (MQ=255)
                            gctggGGATGGGCGTTTCCGCCATCAGCATGATTg       <  1:13540746‑M2/30‑1 (MQ=255)
                            gctggGGAGGGGCGTTTCCGCCATCAGCATGATTg       <  1:6805592‑M2/30‑1 (MQ=255)
                             ctggGGATGGGCGTTTCCGCCATCAGCATGATTgg      >  1:15946762‑M2/5‑35 (MQ=255)
                             ctggGGATGGGCGTTTCCGCCATCAGCATGATTgg      <  1:12285082‑M2/31‑1 (MQ=255)
                             ctggGGATGGGCGTTTCCGCCATCAGCATGATTgg      >  1:19712449‑M2/5‑35 (MQ=255)
                              tggGGATGGGCGTTTCCGCCATCAGCATGATTGGc     <  1:20047270‑M2/32‑1 (MQ=255)
                              tggGGATGGGCGTTTCCGCCATCAGCATGATTGGc     >  1:12564281‑M2/4‑35 (MQ=255)
                              tggGGATGGGCGTTTCCGCCATCAGCATGATTGGc     >  1:7745108‑M2/4‑35 (MQ=255)
                              tggGGATGGGCGTTTCCGCCATCAGCATGATTGGc     >  1:17165972‑M2/4‑35 (MQ=255)
                              tggGGATGGGCGTTTCCGCCATCAGCATGATTGGc     >  1:16912456‑M2/4‑35 (MQ=255)
                              tggGGATGGGCGTTTCCGCCATCAGCATGATTGGc     >  1:5009586‑M2/4‑35 (MQ=255)
                               ggGGATGGGCGTTTCCGCCATCAGCATGATTGGCg    >  1:13022765‑M2/3‑35 (MQ=255)
                               ggGGATGGGCGTTTCCGCCATCAGCATGATTGGCg    >  1:18092888‑M2/3‑35 (MQ=255)
                                gGGATGGGCGTTTCCGCCATCAGCATGATTGGCGa   <  1:19661742‑M2/34‑1 (MQ=255)
                                gGGATGGGCGTTTCCGCCATCAGCATGATTGGCGa   >  1:5200193‑M2/2‑35 (MQ=255)
                                 ggATGGGCGTTTCCGCCATCAGCATGATTGGCGAc  <  1:15583741/35‑1 (MQ=255)
                                 |                                  
GCTACACCACTCAGGGCGATACCGATCTGCTGGGGATGGGCGTTTCCGCCATCAGCATGATTGGCGAC  >  REL606/4031276‑4031343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.