New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 67279679 (0.770)10 (0.150) 3/32 NT 16.4% coding (181/1539 nt) lnt apolipoprotein N‑acyltransferase
?REL606 1048881 = 49 (0.720)intergenic (‑78/‑349) serT/hyaA tRNA‑Ser/hydrogenase 1, small subunit

CAGTTAATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/672756‑672796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaaaAGTGCATTGATAGCGTGAAATAACAGCAGATTGA  >  REL606/1048881‑1048914
                                                                           
CAGTTAATACCGCTGCCAAAGAGACCAAATCCCCA                                          >  1:15195246/1‑35
CAGTTAATACCGCTGCCAAAGAGACCAAATCCCCA                                          >  1:14615106/1‑35
CAGTTAATACCGCTGCCAAAGAGACCAAATCCCCA                                          >  1:726140/1‑35
 AGTTAATCCCGCTGCCAAAGAGACCAAATCCCCAG                                         <  1:17431554/35‑1
 AGTTAATCCCGCTGCCAAAGAGACCAAATCCCCAG                                         <  1:15033776/35‑1
 AGTTAATCCCGCTGCCAAAGAGACCAAATCCCCAG                                         <  1:20502618/35‑1
 AGTTAATCCCGCTGCCAAAGAGACCAAATCCCCAG                                         <  1:20117294/35‑1
 AGTTAATACCGCTGCCAAAGAGACCAAATCCCCAG                                         >  1:2319807/1‑35
 AGTTAATACCGCTGCCAAAGAGACCAAATCCCCAG                                         >  1:9269956/1‑35
  tTTAATCCCGCTGCCAAAGAGACCAAATCCCCAGC                                        <  1:1639771/34‑1
  GTTAATCCCGCTGCCAAAGAGACCAAATCCCCAGC                                        <  1:7760351/35‑1
  GTTAATCCCGCTGCCAAAGAGACCAAATCCCCAGC                                        <  1:19992535/35‑1
   TTAATCCCGCTGCCAAAGAGACCAAATCCCCAGCC                                       <  1:12276106/35‑1
   TTAATCCCGCTGCCAAAGAGACCAAATCCCCAGCC                                       <  1:17918555/35‑1
   TTAATACCGCTGCCAAAGAGACCAAATCCCCAGCC                                       >  1:8629162/1‑35
   TTAATACCGCTGCCAAAGAGACCAAATCCCCAGCC                                       >  1:6943202/1‑35
    aAATCCCGCTGCCAAAGAGACCAAATCCCCAGCCA                                      <  1:13269353/34‑1
    TAATACCGCTGCCAAAGAGACCAAATCCCCAGCCA                                      >  1:475795/1‑35
     AATCCCGCTGCCAAAGAGACCAAATCCCCAGCCAA                                     <  1:1810846/35‑1
     AATCCCGCTGCCAAAGAGACCAAATCCCCAGCCAA                                     <  1:9583570/35‑1
     AATCCCGCTGCCAAAGAGACCAAATCCCCAGCCAA                                     <  1:10108440/35‑1
      atcCCGCTGCCAAAGAGACCAAATCCCCAGCCAAA                                    <  1:19256846/32‑1
      accCCGCTGCCAAAGAGACCAAATCCCCAGCCAAA                                    <  1:5689657/32‑1
      accCCGCTGCCAAAGAGACCAAATCCCCAGCCAAA                                    <  1:2743425/32‑1
      ATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA                                    >  1:588896/1‑35
      ATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA                                    >  1:7065226/1‑35
      ATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA                                    >  1:4230158/1‑35
      ATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA                                    >  1:8386155/1‑35
                       gCCAAAACCCCAGCCAAAAGTGCATTGATAGCGTG                   <  1:20381842/34‑1
                       cCCAAAACCCCAGCCAAAAGTGCATTGATAGCGTG                   <  1:11521607/34‑1
                       cCCAAAACCCCAGCCAAAAGTGCATTGATAGCGTG                   <  1:6752924/34‑1
                        CCAAACCCCCAGCCAAAAGTGCATTGATAGCGTGA                  <  1:17256024/35‑1
                        CCAAAACCCCAGCCAAAAGTGCATTGATAGCGTGA                  <  1:5492179/35‑1
                        CCAAAACCCCAGCCAAAAGTGCATTGATAGCGTGA                  <  1:948774/35‑1
                         aAAAACCCCAGCCAAAAGTGCATTGATAGCGTGAA                 <  1:924550/34‑1
                         CAAACCCCCAGCCAAAAGTGCATTGATAGCGTGAA                 <  1:9039360/35‑1
                         CAAAACCCCAGCCAAAAGTGCATTGATAGCGTGAA                 <  1:10665819/35‑1
                          AAAACCCCAGCCAAAAGTGCATTGATAGCGTGAAA                <  1:10316748/35‑1
                           aaaCCCCAGCCAAAAGTGCATTGATAGCGTGAAAT               <  1:3704/32‑1
                            aaCCCCAGCCAAAAGTGCATTGATAGCGTGAAATA              <  1:9153490/33‑1
                             aCCCCAGCCAAAAGTGCATTGATAGCGTGAAATAA             <  1:20069333/34‑1
                             aCCCCAGCCAAAAGTGCATTGATAGCGTGAAATAA             <  1:3630174/34‑1
                              tCCCAGCCAAAAGTGCATTGATAGCGTGAAATAAC            <  1:4992768/34‑1
                              CCCCAGCCAAAAGTGCATTGATAGCGTGAAATAAC            <  1:18752642/35‑1
                              CCCCAGCCAAAAGTGCATTGATAGCGTGAAATAAC            <  1:17245407/35‑1
                              CCCCAGCCAAAAGTGCATTGATAGAGTGAAATAAC            <  1:4236548/35‑1
                               CCCAGCCAAAAGTGCATTGATAGCGTGAAATAACA           <  1:14363741/35‑1
                               CCCAGCCAAAAGTGCATTGATAGCGTGAAATAACA           <  1:8584498/35‑1
                                CCAGCCAAAAGTGCATTGATAGCGTGAAATAACAG          <  1:11767286/35‑1
                                CCAGCCAAAAGTGCATTGATAGCGTGAAATAACAG          <  1:2604552/35‑1
                                CCAGCCAAAAGTGCATTGATAGCGTGAAATAACAG          <  1:17327128/35‑1
                                 CAGCCGAAAGTGCATTGATAGCGTGAAATAACAGC         <  1:20133/35‑1
                                 CAGCCAAAAGTGCATTGATAGCGTGAAATAACAGC         <  1:9327988/35‑1
                                 CAGCCAAAAGTGCATTGATAGCGTGAAATAACAGC         <  1:13117187/35‑1
                                 CAGCCAAAAGTGCATTGATAGCGTGAAATAACAGC         <  1:916990/35‑1
                                  AGCCAAAAGTGCATTGATAGCGTGAAATAACAGCA        >  1:5040993/1‑35
                                  AGCCAAAAGTGCATTGATAGCGTGAAATAACAGCA        >  1:9773785/1‑35
                                  AGCCAAAAGTGCATTGATAGCGTGAAATAACAGCA        <  1:19392626/35‑1
                                  AGCCAAAAGTGCATTGATAGCGTGAAATAACAGCA        >  1:19262024/1‑35
                                   GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG       <  1:11090638/35‑1
                                   GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG       <  1:2705613/35‑1
                                   GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG       <  1:4376230/35‑1
                                   GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG       <  1:16496329/35‑1
                                   GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG       >  1:1860706/1‑35
                                   GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG       <  1:19606036/35‑1
                                   GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG       >  1:18940060/1‑35
                                   GCCAAAAGTGCATTGATAGCGTGAAATAACAGCAG       >  1:19100133/1‑35
                                   GCCAAAAGTGCATTGATAGCGTGAAATAACAGAAG       <  1:15930686/35‑1
                                    CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA      <  1:7318025/35‑1
                                    CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA      >  1:7579899/1‑35
                                    CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA      >  1:18784734/1‑35
                                    CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA      >  1:8562455/1‑35
                                    CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA      >  1:17239767/1‑35
                                    CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA      <  1:8778737/35‑1
                                    CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA      <  1:12463528/35‑1
                                    CCAAAAGTGCATTGATAGCGTGAAATAACAGCAGA      <  1:12090342/35‑1
                                     CAAAAGTGCATTGATATCGTGAAATAACAGCAGAT     >  1:330089/1‑35
                                     CAAAAGTGCATTGATAGCGTGAAATAACAGCAGAT     >  1:20000678/1‑35
                                      AAAAGTGCATTGATAGCGTGAAATAACAGCAGATT    <  1:10695097/35‑1
                                      AAAAGTGCATTGATAGCGTGAAATAACAGCAGATT    <  1:2946377/35‑1
                                      AAAAGTGCATTGATAGCGTGAAATAACAGCAGATT    <  1:17512076/35‑1
                                       AAAGTGCATTGATAGCGTGAAATAACAGCAGATTG   >  1:10295520/1‑35
                                       AAAGTGCATTGATAGCGTGAAATAACAGCAGATTG   >  1:12350611/1‑35
                                       AAAGTGCATTGATAGCGTGAAATAACAGCAGATTG   >  1:4652336/1‑35
                                       AAAGTGCATTGATAGCGTGAAATAACAGCAGATTG   >  1:16728531/1‑35
                                       AAAGTGCATTGATAGCGTGAAATAACAGCAGATTG   <  1:5274177/35‑1
                                       AAAGTGCATTGATAGCGTGAAATAACAGCAGATTG   <  1:7906556/35‑1
                                        AAGTGCATTTATAGCGTGAAATAACAGCAGATTGA  >  1:17419212/1‑35
                                        AAGTGCATTGATAGCGTGAAATAACAGCAGATTGA  <  1:20224262/35‑1
                                        AAGTGCATTGATAGCGTGAAATAACAGCAGATTGA  >  1:20373955/1‑35
                                        AAGTGCATTGATAGCGTGAAATAACAGCAGATTGA  <  1:5822932/35‑1
                                        AAGTGCATTGATAGCGTGAAATAACAGCAGATTGA  <  1:17631858/35‑1
                                        AAGTGCATTGATAGCGTGAAATAACAGCAGATTGA  >  1:7638751/1‑35
                                        AAGTGCATTGATAGCGTGAAATAACAGCAGATTGA  >  1:18230296/1‑35
                                                                           
CAGTTAATACCGCTGCCAAAGAGACCAAATCCCCAGCCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/672756‑672796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaaaAGTGCATTGATAGCGTGAAATAACAGCAGATTGA  >  REL606/1048881‑1048914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.