Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,420,709 | +GA :: IS3 (+) +4 bp | 14.6% | intergenic (+21/‑9) | ynaK → / → ECB_01341 | conserved protein/hypothetical protein |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1420709 = | 60 (0.780) | 11 (0.120) | 10/44 | NT | 13.0% | intergenic (+21/‑12) | ynaK/ECB_01341 | conserved protein/hypothetical protein |
? | REL606 | = 1443893 | NA (NA) | noncoding (1255/1255 nt) | IS3 | repeat region | |||||
* | ? | REL606 | = 1420712 | 69 (0.810) | 11 (0.110) | 11/46 | NT | 12.2% | intergenic (+24/‑9) | ynaK/ECB_01341 | conserved protein/hypothetical protein |
? | REL606 | 1607918 = | NA (NA) | coding (15/1320 nt) | ECB_01510 | putative tail component of prophage |
GCAAGATGCGGCGTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCT > REL606/1607886‑1607948 | gCAAGATGCGGCGTGGCGGTTATCTGAAAATTGAt < 1:18543752/35‑1 (MQ=40) cAAGATGCGGCGTGGCGGTTATCTGAAAATTGATc < 1:9624194/35‑1 (MQ=255) cAAGATGCGGCGTGGCGGTTATCTGAAAA‑TGATCt < 1:14916390/35‑1 (MQ=1) cAAGATGCGGCGTGGCGGTTATCTGAAAA‑TGATCt < 1:754947/35‑1 (MQ=1) aGATGCGGCGTGGCGGTTATCTGAAAATTGATCtt < 1:7995069/35‑1 (MQ=255) aGATGCGGCGTGGCGGTTATCTGAAAA‑TGATCTTa < 1:8408131/35‑1 (MQ=11) gATGCGGCGTGGCGGTTATCTGAAAATTGATCTTa < 1:2768753/35‑1 (MQ=255) gATGCGGCGTGGCGGTTATCTGAAAA‑TGATCTTAc < 1:86773/35‑1 (MQ=14) aTGCGGCGTGGCGGTTATCTGAAAATTGATCTTAc < 1:8360444/35‑1 (MQ=255) aTGCGGCGTGGCGGTTATCTGAAAA‑TGATCTTAcc < 1:2896476/35‑1 (MQ=14) tGCGGCGTGGCGGTTATCTGAAAATTGATCTTAcc < 1:18587753/35‑1 (MQ=255) tGCGGCGTGGCGGTTATCTGAAAA‑TGATCTTAccc < 1:12037829/35‑1 (MQ=17) cggcgTGGCGGTTATCTGAAAATTGATCTTACCCa < 1:6467694/35‑1 (MQ=255) cggcgTGGCGGTTATCTGAAAATTGATCTTACCCa < 1:2141460/35‑1 (MQ=255) cggcgTGGCGGTTATCTGAAAA‑TGATCTTACCCan < 1:19116429/35‑2 (MQ=17) ggcgTGGCGGTTATCTGAAAATTGATCTTACCCAg < 1:714062/35‑1 (MQ=255) ggcgTGGCGGTTATCTGAAAATTGATCTTACCCAg < 1:1317060/35‑1 (MQ=255) ggcgTGGCGGTTATCTGAAAATTGATCTTACCCAg < 1:12679187/35‑1 (MQ=255) ggcgTGGCGGTTATCTGAAAA‑TGATCTTACACAGc < 1:5642447/35‑1 (MQ=17) gcgTGGCGGTTATCTGAAAA‑TGATCTTACCCAGCa < 1:9666645/35‑1 (MQ=21) cgTGGCGGTTATCTGAAAATTGATCTTACCCAGCa < 1:3003507/35‑1 (MQ=255) gTGGCGGTTATCTGAAAATTGATCTTACCCAGCaa < 1:19548761/35‑1 (MQ=255) gTGGCGGTTATCTGAAAA‑TGATCTTACCCAGCAAt < 1:17770994/35‑1 (MQ=25) tGGCGGTTATCTGAAAA‑TGATCTTACCCAGCAATa < 1:20254620/35‑1 (MQ=25) ggCGGTTATCTGAAAATTGATCTTACCCAGCAATa < 1:11042134/35‑1 (MQ=255) gCGGTTATCTGAAAATTGATCTTACCCAGCAATAg < 1:9667480/35‑1 (MQ=255) cGGTTATCTGAAAATTGATCTTACCCAGCAATAGt < 1:17161084/35‑1 (MQ=255) cGGTTATCTGAAAATTGATCTTACCCAGCAATAGt > 1:14916442/1‑35 (MQ=255) cGGTTATCTGAAAA‑TGATCTTACCCAGCAATAgag > 1:5821899/1‑33 (MQ=18) cGGTTATCTGAAAA‑TGATCTTACCCAGCAATAGTg < 1:16924156/35‑1 (MQ=18) cGGTTATCTGAAAA‑TGATCTTACCCAGCAATAGTg > 1:7848567/1‑35 (MQ=18) cGGTTATCTGAAAA‑TGATCTTACCCAGCAATAGTg > 1:1416904/1‑35 (MQ=18) cGGTTATCTGAAAA‑TGATCTTACCCAGCAATAGTg < 1:1055423/35‑1 (MQ=18) cGGTTATCTGAAAA‑TGATCTTACCCAGCAATAGTg < 1:15675205/35‑1 (MQ=18) cGGTTATCTCAAAATTGATCTTACCCAGCAATAGt > 1:7002073/1‑35 (MQ=255) ggTTATCTGAAACTTGATCTTACCCAGCAATAGTg > 1:7035198/1‑35 (MQ=255) ggTTATCTGAAAATTGATCTTACCCAGCAATAGTg < 1:16699404/35‑1 (MQ=255) ggTTATCTGAAAATTGATCTTACCCAGCAATAGTg > 1:18313293/1‑35 (MQ=255) ggTTATCTGAAAATTGATCTTACCCAGCAATAGTg < 1:15824653/35‑1 (MQ=255) ggTTATCTGAAAATTGATCTTACCCAGCAATAGTg < 1:12597631/35‑1 (MQ=255) ggTTATCTGAAAA‑TGATCTTACCCAGCAATAGTgg > 1:17095253/1‑35 (MQ=18) ggTTATCTGAAAA‑TGATCTTACCCAGCAATAGTgg > 1:14116230/1‑35 (MQ=18) ggTTATCTGAAAA‑TGATCTTACCCAGCAATAGTgg < 1:13235403/35‑1 (MQ=18) gTTATCTGAAAATTGATCTTACCCAGCAATAGTgg > 1:10002320/1‑35 (MQ=255) gTTATCTGAAAATTGATCTTACCCAGCAATAGTgg < 1:10293477/35‑1 (MQ=255) gTTATCTGAAAATTGATCTTACCCAGCAATAGTgg > 1:12110953/1‑35 (MQ=255) ttATCTGAAAATTGATCTTACCCAGCAATAGTGGa > 1:412842/1‑35 (MQ=255) ttATCTGAAAA‑TGATCTTACCCAGCAATAGTGGac > 1:1563574/1‑35 (MQ=17) ttATCTGAAAA‑TGATCTTACCCAGCAATAGTGGac < 1:13984342/35‑1 (MQ=17) ttATCTGAAAA‑TGACCTTACCCAGCAATAGTGGac > 1:10055934/1‑35 (MQ=17) tATCTGAAAATTGATCTTACCCAGCAATAGTGGac > 1:6074937/1‑35 (MQ=255) tATCTGAAAA‑TGATCTTACCCAGCAATAGTGGaca > 1:16349039/1‑35 (MQ=14) aTCTGAAAATTGATCTTACCCAGCAATAGTGGaca > 1:9057435/1‑35 (MQ=255) aTCTGAAAATTGATCTTACCCAGCAATAGTGGaca > 1:9075744/1‑35 (MQ=255) aTCTGAAAA‑TGATCTTACCCAGCAATAGTGGacac > 1:10802390/1‑35 (MQ=14) aTCTGAAAA‑TGATCTTACCCAGCAATAGTGGacac < 1:13692983/35‑1 (MQ=14) aTCTGAAAA‑TGATCTTACCCAGCAATAGTGGacac < 1:18397026/35‑1 (MQ=14) aTCTGAAAA‑TGATCTTACCCAGCAATAGCGGacac > 1:268202/1‑35 (MQ=14) tCTGAAAATTGATCTTACCCAGCAATAGTGGacac < 1:11688175/35‑1 (MQ=255) tCTGAAAATTGATCTTACCCAGCAATAGTGGacac > 1:2765446/1‑35 (MQ=255) tCTGAAAATTGATCTTACCCAGCAATAGTGGacac > 1:3948482/1‑35 (MQ=255) tCTGAAAA‑TGATCTTACCCAGCAATAGTGGACAcg > 1:9066961/1‑35 (MQ=11) cTGAAAATTGATCTTACCCATCAATAGTGGACAcg > 1:11018612/1‑35 (MQ=255) cTGAAAATTGATCTTACCCAGCAATAGTGGACAcg > 1:11498553/1‑35 (MQ=255) cTGAAAATTGATCTTACCCAGCAATAGTGGACAcg > 1:8248664/1‑35 (MQ=255) cTGAAAATTGATCTTACCCAGCAATAGTGGACAcg > 1:8969902/1‑35 (MQ=255) cTGAAAA‑TGATCTTACCCAGCAATAGTGGACAcgc > 1:919346/1‑35 (MQ=11) tGAAAATTGATCTTACCCAGCAATAGTGGACAcgc < 1:19131340/35‑1 (MQ=40) tGAAAATTGATCTTACCCAGCAATAGTGGACAcgc < 1:5220493/35‑1 (MQ=40) gAAAATTGATCTTACCCAGCAATAGTGGACAcgcg < 1:1842676/35‑1 (MQ=38) gAAAATTGATCTTACCCAGCAATAGTGGACAcgcg > 1:16296802/1‑35 (MQ=38) gAAAATTGATCTTACCCAGCAATAGTGGACAcgcg > 1:14766655/1‑35 (MQ=38) gAAAATTGATCTTACCCAGCAATAGTGGACAcgcg > 1:12641877/1‑35 (MQ=38) gAAAATT‑ATCTTACCCAGCAATAGTGGACACGCgg > 1:14274543/1‑35 (MQ=11) aaaaTTGATCTTACCCAGCAATAGTGGACACGCgg > 1:9981010/1‑35 (MQ=38) aaaaTTGATCTTACCCAGCAATAGTGGACACGCgg < 1:13102508/35‑1 (MQ=38) aaaTTGATCTTACCCAGCAATAGTGGACACGCGGc < 1:16706066/35‑1 (MQ=35) aaaTTGATCTTACCCAGCAATAGTGGACACGCGGc < 1:6358580/35‑1 (MQ=35) aaTTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:12352185/1‑35 (MQ=32) aaTTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:1304264/1‑35 (MQ=32) aaTTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:2655292/35‑1 (MQ=32) aaTTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:14665205/1‑35 (MQ=32) aaTTGATCTTACACAGCAATAGTGGACACGCGGCt < 1:11380142/35‑1 (MQ=12) | GCAAGATGCGGCGTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCT > REL606/1607886‑1607948 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |