New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 38998364 (0.620)8 (0.100) 5/36 NT 10.3% coding (575/1374 nt) proY predicted cryptic proline transporter
?REL606 = 3813056 92 (1.190)intergenic (‑137/‑797) ivbL/emrD ilvB operon leader peptide/multidrug efflux system protein

GGCAACCGACCGGTATTCATAACCTGTGGAGCAACGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/389944‑389983
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT  <  REL606/3813056‑3813023
                                                                          
GGCAACCGACCGGTATTCATAGCCTGTGGAGCAAC                                         <  1:3641864/35‑1
GGCAACCGACCGGTATTCATAACCTGTGGAGCAAC                                         >  1:9734554/1‑35
GGCAACCGACCGGTATTCATAACCTGTGGAGCAAC                                         >  1:12732437/1‑35
 GCAACCGACCGGTATTCATAACCTGTGGAGCAACG                                        >  1:4890729/1‑35
 GCAACCGACCGGTATTCATAACCTGTGGAGCAACG                                        >  1:20327558/1‑35
  CAACCGACCGGTATTCATAACCTGTGGAGCAACGG                                       >  1:9977584/1‑35
  CAACCGACCGGTATTCATAACCTGTGGAGCAACGG                                       >  1:7237678/1‑35
  CAACCGACCGGTATTCATAACCTGTGGAGCAACGG                                       >  1:9829909/1‑35
   AACCGCCCGGTATTCATAACCTGTGGAGCAACGGC                                      <  1:14732398/35‑1
   AACCGACCGGTATTCATAACCTGTGGAGCAACGGC                                      >  1:8844121/1‑35
   AACCGACCGGTATTCATAACCTGTGGAGCAACGGC                                      >  1:1199364/1‑35
   AACCGACCGGTATTCATAACCTGTGGAGCAACGGC                                      >  1:9542785/1‑35
    cCCGACCGGTATTCATAACCTGTGGAGCAACGGCG                                     <  1:7444242/34‑1
    ACCGACCGGTGTTCATAACCTGTGGAGCAACGGCG                                     <  1:9844057/35‑1
    ACCGACCGGTATTCATAACCTGTGGAGCAACGTCG                                     >  1:16902442/1‑35
    ACCGACCGGTATTCATAACCTGTGGAGCAACGGCG                                     >  1:12405081/1‑35
     CCGACCGGTATTCATAACCTGTGGAGCAACGGCGG                                    >  1:16485979/1‑35
       GACCGGTATTCATAACCTGTTGAGCAACGGCGGGt                                  >  1:8444178/1‑34
       GACCGGTATTCATAACCTGTGGAGCAACGGCGGGt                                  >  1:2686075/1‑34
       GACCGGTATTCATAACCTGTGGAGCAACGGCGGGt                                  >  1:4231159/1‑34
       GACCGGTATTCATAACCTGTGGAGCAACGGCGGGt                                  >  1:6503178/1‑34
       GACCGGTATTCATAACCTGTGGAGCAACGGCGGGc                                  >  1:19253509/1‑34
       GACCGGTATTCATAACCTGTGGAGCAACGGCGGGG                                  >  1:5652978/1‑35
        ACCGGTATTCATAACCTGTGGAGCAACGGCGGGGT                                 >  1:19367179/1‑35
        ACCGGTATTCATAACCTGTGGAGCAACGGCGGGGT                                 >  1:19327987/1‑35
         CCGGTATTCATAACCTGTGGAGCAACGGCGGGGTc                                >  1:6717725/1‑34
         CCGGTATTCATAACCTGTGGAGCAACGGCGGGGTc                                >  1:4493295/1‑34
         CCGGTATTCATAACCTGTGGAGCAACGGCGGGGTT                                >  1:7252045/1‑35
         CCGGTATTCATAACCTGTGGAGCAACGGCGGGCTT                                >  1:13568657/1‑35
         CCGGTATTCATAACCTGTGGAGCAACGGCGGCGTT                                >  1:5382434/1‑35
            GTATTCATAACCTGTGGAGCAACGGCGGGTTTTTT                             >  1:11090048/1‑35
            GTATTCATAACCTGTGGAGCAACGGCGGGTTTTTT                             >  1:18344343/1‑35
             TATTCATAACCTGTGGAGCAACGGCGGGTTTTTTT                            >  1:3803041/1‑35
             TATTCATAACCTGTGGAGCAACGGCGGGGTCTTTa                            >  1:12143159/1‑34
              ATTCATAACCTGTGGAGCAACGGCGGGTTTTTTTG                           >  1:3818064/1‑35
              ATTCATAACCTGTGGAGCAACGGCGGGGTTTTTTG                           >  1:7720340/1‑35
               TTCATAACCTGTGGAGCAACGGCGGGGTTTTTTGT                          >  1:7550068/1‑35
                 CATAACCTGTGGAGCAACGGCGGGGTCTTTTGTTA                        >  1:3453930/1‑35
                                  CGGCGGGGTTTTTTGTTATCTGCAATTCAGTACAA       <  1:18907714/35‑1
                                  CGGCGGGGTTTTTTGTTATCTGCAATTCAGTACAA       <  1:1800338/35‑1
                                  CGGCGGGGTTTTTTGTTATCTGCAATTCAGTACAA       <  1:13395831/35‑1
                                  CGGCGGGGTTTTTTGTTATCTGCAATTCAGTACAA       <  1:17451156/35‑1
                                  CGGCGGGGTTTTTTGTTATCTGCAATTAAGTACAA       <  1:6496409/35‑1
                                   ggaGGGGTTTTTTGTTATCTGCAATTCAGTACAAA      <  1:1829410/32‑1
                                   GGCTGGGTTTTTTGTTATCTGCAATTCAGTACAAA      >  1:934885/1‑35
                                   GGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAA      <  1:5496811/35‑1
                                   GGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAA      >  1:1017486/1‑35
                                   GGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAA      >  1:2723911/1‑35
                                   GGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAA      >  1:13782962/1‑35
                                   GGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAA      <  1:11151765/35‑1
                                   GGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAA      <  1:12547245/35‑1
                                    GCGGGGTTTTTTGTTATCTGCAATTCAGTACAAAA     >  1:1141607/1‑35
                                     CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC    <  1:156321/35‑1
                                     CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC    >  1:14254001/1‑35
                                     CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC    <  1:6794658/35‑1
                                     CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC    >  1:7947040/1‑35
                                     CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC    <  1:18659189/35‑1
                                     CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC    <  1:5471956/35‑1
                                     CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC    <  1:5359911/35‑1
                                     CGGGGTTTTTTGTTATCTGCAATTCAGTACAAAAC    <  1:19743797/35‑1
                                      GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG   <  1:8381026/35‑1
                                      GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG   >  1:10814122/1‑35
                                      GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG   >  1:1060720/1‑35
                                      GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG   >  1:16612700/1‑35
                                      GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG   >  1:16802864/1‑35
                                      GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG   >  1:18741165/1‑35
                                      GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG   >  1:483400/1‑35
                                      GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG   >  1:2379911/1‑35
                                      GGGGTTTTTTGTTATCTGCAATTCAGTACAAAACG   >  1:3319778/1‑35
                                       GGGTTTTTTGTTATCTGCAATTTAGTACAAAACGT  <  1:18465832/35‑1
                                       GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT  >  1:16082044/1‑35
                                       GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT  >  1:16709205/1‑35
                                       GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT  <  1:6670381/35‑1
                                       GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT  <  1:8014081/35‑1
                                       GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT  <  1:8422595/35‑1
                                       GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT  >  1:12836542/1‑35
                                       GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT  <  1:17485325/35‑1
                                       GGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT  >  1:11032337/1‑35
                                                                          
GGCAACCGACCGGTATTCATAACCTGTGGAGCAACGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/389944‑389983
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGTTTTTTGTTATCTGCAATTCAGTACAAAACGT  <  REL606/3813056‑3813023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.