New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1036060 =100 (0.970)19 (0.190) 7/46 NT 20.0% intergenic (+32/+44) ycbG/ompA hypothetical protein/outer membrane protein A (3a;II*;G;d)
?REL606 3483139 = 59 (0.570)coding (1455/2706 nt) malT transcriptional regulator MalT

Only 100 of 130 total aligned reads displayed.

TGGCACTGGAAGAGCTGCCGCCGGGCTGGTTCTATAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAAG  >  REL606/3483105‑3483173
                                  |                                  
tGGCACTGGAAGAGCTGCCGCCGGGCTGGTTCtat                                    >  1:3356848/1‑35 (MQ=255)
tGGCACTGGAAGAGCTGCCGCCGGGCTGGTTCtat                                    >  1:16061133/1‑35 (MQ=255)
tGGCACTGGAAGAGCTGCCGCCGGGCTGGTTCtat                                    >  1:2192959/1‑35 (MQ=255)
tGGCACTGGAAGAGCTGCCGCCGGGCTGGTTCtat                                    >  1:18880750/1‑35 (MQ=255)
tGGCACTGGAAGACCTGCCGCCGGGCTGGTTCtat                                    <  1:18507210/35‑1 (MQ=255)
 ggCACTGGAATAGCTGCCGCCGGGCTGGTTCtata                                   >  1:6353955/1‑35 (MQ=255)
 ggCACGGGAGAAGCTCCCGCCGGGCTGGTTCtata                                   <  1:6812174/35‑1 (MQ=19)
  gCACTGGAAGAGCTGCCGCCGGGCTGGTTCTATAg                                  >  1:15658741/1‑35 (MQ=255)
  gCACTGGAAGAGCTGCCGCCGGGCTGGTTCTATAg                                  >  1:15061683/1‑35 (MQ=255)
  gCACTGGAAGAGCTGCCGCCGGGCTGGTTCTATAg                                  >  1:19279008/1‑35 (MQ=255)
  gCACGGGAAGAGCTGCCGCCGGGCTGGTTCTATAg                                  <  1:6315695/35‑1 (MQ=255)
   cccTGGAAGGCCTGCCGCCGGGCTGGTTCTATAGc                                 <  1:516478/33‑1 (MQ=25)
   cACTGGAAGAGCTGCCGCCGGGCTGGTTCTATAGc                                 >  1:20550944/1‑35 (MQ=255)
   cACGGGAAGAGCTGCCGCCGGGCTGGTTCTATAGc                                 <  1:12080412/35‑1 (MQ=255)
    aCTGGAAGAGCTGCCGCCGGGCTGGTTCTATAGcc                                >  1:9478892/1‑35 (MQ=255)
    aCTGGAAGAGCTGCCGCCGGGCTGGTTCTATAGcc                                >  1:16917521/1‑35 (MQ=255)
     cTGGAAGAGCTGCCGCCGGGCTGTTTTTATTGCCg                               >  1:1208407/1‑35 (MQ=25)
     cTGGAAGAGCTGCCGCCGGGCTGGTTCTATAGCCg                               >  1:2222367/1‑35 (MQ=255)
     cTGGAAGAGCTGCCGCCGGGCTGGTTCTATAGCCg                               >  1:2880417/1‑35 (MQ=255)
     cTGGAAGAGCTGCCGCCGGGCTGGTTCTATAGCCg                               >  1:9522810/1‑35 (MQ=255)
      tGGAAGAGCTGCCGCCGGGCTGGTTCTATAGCCGc                              >  1:17654914/1‑35 (MQ=255)
       ggAAGAGCTGCCGCCGGGCTGGTTCTATAGCCGCa                             >  1:4320478/1‑35 (MQ=255)
       ggAAGAGCTGCCGCCGGGCTGGTTCTATAGCCGCa                             >  1:8717657/1‑35 (MQ=255)
       ggAAGAGCTGCCGCCGGGCTGGTTCTATAGCCGCa                             >  1:13734196/1‑35 (MQ=255)
       ggAAGAGCTGCCGCCGGGCTGGTTCTATAGCCGCa                             >  1:1922681/1‑35 (MQ=255)
       ggAAGAGCTGCCGCCGGGCTGGGTCCATAGCCGCa                             >  1:1979684/1‑35 (MQ=37)
        gAAGAGCTGCCGCCGGGCTGGTTCTATAGCCGCAt                            >  1:11902872/1‑35 (MQ=255)
        gAAGAGCTGCCGCCGGGCTGGTTCTATAGCCGCAt                            >  1:17056516/1‑35 (MQ=255)
         aaGAGCTGCCGCCGGGCTGGTTCTATAGCCGCAtt                           >  1:19896240/1‑35 (MQ=255)
         aaGAGCTGCCGCCGGGCTGGTTCTATAGCCGCAtt                           >  1:14313811/1‑35 (MQ=255)
          agagCTGCCGCCGGGCTGGTTCTATAGCCGCCTtg                          >  1:16805003/1‑35 (MQ=255)
          agagCTGCCGCCGGGCTGGTTCTATAGCCGCATtg                          >  1:13529255/1‑35 (MQ=255)
          agagCTGCCGCCGGGCTGGTTCTATAGCCGCATtg                          >  1:12031514/1‑35 (MQ=255)
           gagCTGCCGCCGGGCTGGTTCTATAGCCGCATtgt                         >  1:5897740/1‑35 (MQ=255)
           gagCTGCCGCCGGGCTGGTTCTATAGCCGCATtgt                         >  1:7010236/1‑35 (MQ=255)
           gagCTGCCGCCGGGCTGGTTCTATAGCCGCATtgt                         >  1:4910858/1‑35 (MQ=255)
           gagCTGCCGCCGGGCTGGTTCTATAGCCGCATtgt                         >  1:19327202/1‑35 (MQ=255)
            agCTGCCGCCGGGCTGGTTCTATAGCCGCATtgtg                        >  1:2667646/1‑35 (MQ=255)
             gCTGCCGCCGGGCTGGTTCTATAGCCGCATTGTgg                       >  1:660943/1‑35 (MQ=255)
              cTGCCGCCGGGCTGGTTCTATAGCCGCATTGTGGc                      >  1:14160959/1‑35 (MQ=255)
              cTGCCGCCGGGCTGGTTCTATAGCCGCATTGTGGc                      >  1:301532/1‑35 (MQ=255)
               tGCCGCCGGGCTGGTTCTATAGCCGCATTGTGGCa                     >  1:15254135/1‑35 (MQ=255)
               tGCCGCCGGGCTGGTTCTATAGCCGCATTGTGGCa                     >  1:10636122/1‑35 (MQ=255)
               tGCCGCCGGGCTGGTTCTATAGCCGCATTGTGGCa                     >  1:16502984/1‑35 (MQ=255)
                gccgcggggtttttttttTAGCCGCATTGTGGCaa                    <  1:9598511‑M2/17‑1 (MQ=255)
                gccgccGGGCTGGTTCTATAGCCGCATTGTGGCaa                    >  1:16549843/1‑35 (MQ=255)
                cccgcggggtttttttttTAGCCGCATTGTGGCaa                    <  1:13519580‑M2/17‑1 (MQ=255)
                 ccgcggGGTTGTTTTTTTAGCCGCATTGTGGCAAc                   <  1:5158913/35‑1 (MQ=12)
                 ccgccgGGCTGGTTCTATAGCCGCATTGTGGCAAc                   >  1:14074940/1‑35 (MQ=255)
                 ccgccgGGCTGGTTCTATAGCCGCATTGTGGCAAc                   >  1:7460674/1‑35 (MQ=255)
                  cgcggggtttttttttTAGCCGCATTGTGGCAAcc                  <  1:8441329‑M2/19‑1 (MQ=255)
                  cgccgGGCTGTTTCTATAGCCGCATTGTGGCAAcc                  >  1:13690861/1‑35 (MQ=255)
                  cgccgGGCTGGTTCTATAGCCGCATTGTGGCAAcc                  >  1:1132335/1‑35 (MQ=255)
                  cgccgGGCTGGTTCTATAGCCGCATTGTGGCAAcc                  >  1:10955078/1‑35 (MQ=255)
                   gcggggattttttttTAGCCGCATTGTGGCAACCt                 <  1:7984060‑M2/20‑1 (MQ=255)
                    cggtgtttttttttTAGCCGCATTGTGGCAACCTc                <  1:20589806‑M2/21‑1 (MQ=255)
                    ccgGGCTGGTTCTATAGCCGCATTGTGGCAACCTc                >  1:10400484/1‑35 (MQ=255)
                     gggttttttttttTAGCCGCATTGTGGCAACCTCg               <  1:13993658‑M2/22‑1 (MQ=255)
                     ggggtttttttttTAGCCGCATTGTGGCAACCTCg               <  1:6126377‑M2/22‑1 (MQ=255)
                     cgggtttttttttTAGCCGCATTGTGGCAACCTCg               <  1:5120000‑M2/22‑1 (MQ=255)
                     cggggttttttttTAGCCGCATTGTGGCAACCTCg               <  1:11579557‑M2/22‑1 (MQ=255)
                      gggtttttttttTAGCCGCATTGTGGCAACCTCgg              <  1:18354127‑M2/23‑1 (MQ=255)
                      gggCTGGTTCTATAGCCGCATTGTGGCAACCTCgg              >  1:1330716/1‑35 (MQ=255)
                       ggtttttttttTAGCCGCATTGTGGCAACCTCGGt             <  1:15610536‑M2/24‑1 (MQ=255)
                       ggttgttttttTAGCCGCATTGTGGCAACCTCGGt             <  1:2560320‑M2/24‑1 (MQ=255)
                       ggCTGGTTCTATAGCCGCATTGTGGCAACCTCGGt             >  1:3523184/1‑35 (MQ=255)
                       cgttgttttttTAGCCGCATTGTGGCAACCTCGGt             <  1:13624980‑M2/24‑1 (MQ=255)
                        gtttttttttTAGCCGCATTGTGGCAACCTCGGTg            <  1:2638718‑M2/25‑1 (MQ=255)
                        gCTGTTTTTTTAGCCGCATTGTGGCAACCTCGGTg            <  1:17810457/35‑1 (MQ=25)
                        gCTGGTTCTATAGCCGCATTGTGGCAACCTCGGTg            >  1:12960397/1‑35 (MQ=255)
                        gCTGGTTCTATAGCCGCATTGTGGCAACCTCGGTg            >  1:6916270/1‑35 (MQ=255)
                         cTGGTTCTATAGCCGCATTGTGGCAACCTCGGTGc           >  1:1427427/1‑35 (MQ=255)
                          tgttttttTAGCCGCATTGTGGCAACCTCGGTGCt          <  1:1210775‑M2/27‑1 (MQ=255)
                           ggTTCTATAGCCGCATTGTGGCAACCTCGGTGCTg         >  1:8660123/1‑35 (MQ=255)
                           ggTTCTATAGCCGCATTGTGGCAACCTCGGTGCTg         >  1:9316108/1‑35 (MQ=255)
                           ggTTCTATAGCCGCATTGTGGCAACCTCGGTGCTg         >  1:1005871/1‑35 (MQ=255)
                           ggTTCTATAGCCGCATTGTGGCAACCTCGGTGCTg         >  1:13956826/1‑35 (MQ=255)
                            ttttttTAGCCGCATTGTGGCAACCTCGGTGCTgg        <  1:12993922‑M2/29‑1 (MQ=255)
                             tttttTAGCCGCATTGTGGCAACCTCGGTGCTggg       <  1:15034236‑M2/30‑1 (MQ=255)
                             ttCTATAGCCGCATTGTGGCAACCTCGGTGCTggg       >  1:12867027/1‑35 (MQ=255)
                             ttCTATAGCCGCATTGTGGCAACCTCGGTGCTggg       >  1:13616094/1‑35 (MQ=255)
                             ttCTATAGCCGCATTGTGGCAACCTCGGTGCTggg       >  1:4075473/1‑35 (MQ=255)
                             ttCTATAGCCGCATTGTGGCAACCTCGGTGCTggg       >  1:7278777/1‑35 (MQ=255)
                              ttttTAGCCGCATTGTGGCAACCTCGGTGCTGGGt      <  1:17952083‑M2/31‑1 (MQ=255)
                              tCTATAGCCGCATTGTGGCAACCTCGGTGCTGGGt      >  1:10021784/1‑35 (MQ=255)
                               tttTAGCCGCATTGTGGCAACCTCGGTGCTGGGTg     <  1:17089994‑M2/32‑1 (MQ=255)
                               tttTAGCCGCATTGTGGCAACCTCGGTGCTGGGTg     <  1:19654103‑M2/32‑1 (MQ=255)
                                tataGCCGCATTGTGGCAACCTCGGTGCTGGGTGa    >  1:6326212/1‑35 (MQ=255)
                                 tTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGaa   <  1:13360541‑M2/34‑1 (MQ=255)
                                 tTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGaa   <  1:3623770‑M2/34‑1 (MQ=255)
                                 tTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGaa   <  1:759604‑M2/34‑1 (MQ=255)
                                 tTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGaa   <  1:2839559‑M2/34‑1 (MQ=255)
                                 ataGCCGCATTGTGGCAACCTCGGTGCTGGGTTaa   >  1:12153669/1‑35 (MQ=255)
                                 ataGCCGCATTGTGGCAACCTCGGTGCTGGGTGaa   >  1:4534973/1‑35 (MQ=255)
                                 ataGCCGCATTGTGGCAACCTCGGTGCTGGGTGaa   >  1:1231581/1‑35 (MQ=255)
                                 ataGCCGCATTGTGGCAACCTCGGTGCTGGGTGaa   >  1:16459714/1‑35 (MQ=255)
                                 ataGCCGCATTGTGGCAACCTCGGTGCTGGGTGaa   >  1:11380227/1‑35 (MQ=255)
                                 ataGCCGCATTGTGGCAACCTCGGTGCTGGGTGaa   >  1:18789926/1‑35 (MQ=255)
                                  taGCCGCATTGTGGCAACCTCGGTGCTGGGTGAAg  >  1:11661208/1‑35 (MQ=255)
                                  taGCCGCATTGTGGCAACCTCGGTGCTGGGGGAAg  >  1:11508859/1‑35 (MQ=255)
                                  |                                  
TGGCACTGGAAGAGCTGCCGCCGGGCTGGTTCTATAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAAG  >  REL606/3483105‑3483173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.