New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1050924 = | 43 (0.420) | 6 (0.070) | 4/40 | NT | 9.8% | coding (580/1794 nt) | hyaB | hydrogenase 1, large subunit |
? | REL606 | 1543472 = | 75 (0.880) | coding (969/1536 nt) | xasA | predicted glutamate:gamma‑aminobutyric acid antiporter |
Only 100 of 159 total aligned reads displayed.
TTTTGTTCATTTTAGCGAATGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGACATACATCCCGCGAGAAG > REL606/1543438‑1543506 | ttttGTTCATTTTAGCGAATGCCGCTGGCAGCAgg < 1:6197675/35‑1 (MQ=255) ttttGTTCATTTTAGCGAATGCCGCTGGCAGCAgg < 1:3263043/35‑1 (MQ=255) gggcaaagcccatcaggttagcttctggcgggagg > 1:8813202‑M2/35‑35 (MQ=255) tttGTTCATTTTAGCGAATGCCGCTGGCAGCAggg > 1:10287995/1‑34 (MQ=255) tttGTTCATTTTAGCGAATGCCGCTGGCAGCAggg > 1:8375816/1‑34 (MQ=255) tttGTTCATTTTAGCGAATGCCGCTGGCAGCAggg > 1:3862515/1‑34 (MQ=255) tttGTTCATTTTAGCGAATGCCGCTGGCAGCAGGt < 1:18434750/35‑1 (MQ=255) tttGTTCATTTTAGCGAATGCCGCTGGCAGCAGGt < 1:11185471/35‑1 (MQ=255) gtcaaagcccatcaggttagcttctggcggcagGt > 1:18608517‑M2/34‑35 (MQ=255) ttGTTCATTTTAGCGAATGCCGCTGGCAGCATGtt > 1:7951809/1‑35 (MQ=255) ttGTTCATTTTAGCGAATGCCGCTGGCAGCAGGtt < 1:8834623/35‑1 (MQ=255) tGTTCATTTTAGCGAATGCCGCTGGCAGCAGGttt < 1:20535311/35‑1 (MQ=255) tGTTCATTTTAGCGAATGCCGCTGGCAGCAGGttt < 1:11293072/35‑1 (MQ=255) tGTTCATTTTAGCGAATGCCGCTGGCAGCAGGgtt > 1:7896359/1‑35 (MQ=255) caaagcccatcaggttagcttctggcggcagGttt > 1:4022043‑M2/32‑35 (MQ=255) gTTCATTTTAGCGAATGCCGCTGGCAGCAGGgttt > 1:6248471/1‑35 (MQ=255) gTTCATTTTAGCGAATGCCGCTGGCAGCAGGgttt > 1:2260347/1‑35 (MQ=255) gTTCATTTTAGCGAATGCCGCTGGCAGCAGGgttt > 1:14748176/1‑35 (MQ=255) aaagcccatcaggttagcttctggcggcaggttgt > 1:8452009‑M2/31‑33 (MQ=255) aaagcccatcaggttagcttctggcggcagGtttt > 1:14019352‑M2/31‑35 (MQ=255) ttCATTTTAGCGAATGCCGCTGGCAGCAGGgtttt > 1:9365296/1‑35 (MQ=255) tCATTTTAGCGAATGCCGCTGGCAGCAGGTTTTTc < 1:4604258/35‑1 (MQ=255) ctaTTTTAGCGAATGCCGCTGGCAGCAGGTTTTTc < 1:3178436/33‑1 (MQ=255) agcccatcaggttagcttctggcggcaggttttta > 1:12317471‑M2/29‑34 (MQ=255) cATTTTAGCGAATGCCGCTGGCAGGAGGgtttttt > 1:14227965/1‑33 (MQ=25) cATTTTAGCGAATGCCGCTGGCAGCAGGTTTTTCt < 1:11144240/35‑1 (MQ=255) cATTTTAGCGAATGCCGCTGGCAGCAGGTTTTTCt < 1:192986/35‑1 (MQ=255) cATTTTAGCGAATGCCGCTGGCAGCAGGGTTTTCt > 1:18302957/1‑35 (MQ=255) cccatcaggttagcttctggcggccgGTTTTTctt > 1:3673906‑M2/27‑34 (MQ=255) aTTTTAGCGAATGCCGCTGGCAGCAGGTTTTTCTg < 1:15334357/35‑1 (MQ=255) aTTTTAGCGAATGCCGCTGGCAGCAGGTTTTTCTg < 1:13366600/35‑1 (MQ=255) ccatcaggttagcttctggcggcagGTTTTTATgc > 1:8598559‑M2/26‑35 (MQ=255) tttAGCGAATGCCGCTGGCAGCAGGGTTTTCTgcg > 1:3746128/1‑35 (MQ=255) ttAGCGAATGCCGCTGGCAGCAGGTTTTTCTgcgc < 1:5458774/35‑1 (MQ=255) ttAGCGAATGCCGCTGGCAGCAGGTTTTTCTgcgc < 1:5878322/35‑1 (MQ=255) ttAGCGAATGCCGATGGCAGCAGGTTTTTCTgcgc < 1:12252912/35‑1 (MQ=255) tAGCGAATGCCGCTGGCAGCAGGTTTTTCTGCGCt < 1:417582/35‑1 (MQ=255) tAGCGAATGCCGCTGGCAGCAGGTTTTTCTGCGCt < 1:238926/35‑1 (MQ=255) aGCGAATGCCGCTGGTAGCAGGTTTTTCTGCGCtg > 1:10684439/1‑35 (MQ=255) gCGAATGCCGCTGGCAGCAGGTTTTTCTGCGCtgt < 1:13690419/35‑1 (MQ=255) gCGAATGCCGCTGGCAGCAGGTTTTTCTGCGCtgt < 1:6775777/35‑1 (MQ=255) gCGAATGCCGCTGGCAGCAGGGTTTTCTGCGGtgt > 1:18419071/1‑35 (MQ=37) cGAATGCCGCTGGCAGCAGGTTTTTCTGCGCtgtg < 1:1695808/35‑1 (MQ=255) gAATGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGa > 1:3326913/1‑35 (MQ=255) gAATGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGa > 1:19350889/1‑35 (MQ=255) gAATGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGa < 1:17524933/35‑1 (MQ=255) aaTGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGac < 1:16187041/35‑1 (MQ=255) aaTGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGac < 1:1145704/35‑1 (MQ=255) aaTGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGac < 1:4682702/35‑1 (MQ=255) aTGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGcca > 1:19215347/1‑35 (MQ=255) aTGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGaca > 1:8545011/1‑35 (MQ=255) aTGCCGCTGGCAGCAGGGTTTTCTGCGCTGTGaca > 1:20082492/1‑35 (MQ=255) tGCCGCTGGCAGGAGGTTTTTCTGCGCTGTGacat > 1:14145076/1‑35 (MQ=255) tGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGacat < 1:6945513/35‑1 (MQ=255) tGCCGCTGGCAGCAGGGTTTTCTGCGCTGTGacat > 1:5695167/1‑35 (MQ=255) gCCGCTGGCAGCAGGTTTTTCTGCGCTGTGacata < 1:1634120/35‑1 (MQ=255) ccGCTGGCAGCAGGTTTTTCTGCGCTGTGacatac > 1:11755602/1‑35 (MQ=255) ccGCTGGCAGCAGGTTTTTCTGCGCTGTGacatac < 1:17541510/35‑1 (MQ=255) ccGCTGGCAGCAGGTTTTTCTGCGCTGTGacatac < 1:18546559/35‑1 (MQ=255) cGCTGGCAGCAGGTTTTTCTGCGCTGTGacataca < 1:8710224/35‑1 (MQ=255) cGCTGGCAGCAGGTTTTTCTGCGCTGTGacataca < 1:16696921/35‑1 (MQ=255) cGCTGGCAGCAGGTTTTTCTGCGCTGTGacataca < 1:5725838/35‑1 (MQ=255) cGCTGGCAGCAGGTTTTTCTGCGCTGTGacataca > 1:6562684/1‑35 (MQ=255) cGCTGGCAGCAGGTTTTTCTGCGCTGTGacataca > 1:4612460/1‑35 (MQ=255) cGCTGGCAGCAGGTTTTTCTGCGCTGTGacataca > 1:4944836/1‑35 (MQ=255) gCTGGCAGCAGGTTTTTCTGCGCTGTGacatacat < 1:19016472/35‑1 (MQ=255) gCTGGCAGCAGGGTTTTCTGCGCTGTGacatacat > 1:3864917/1‑35 (MQ=255) gCTGGCAGCAGGGTTTTCTGCGCTGTGacatacat > 1:3916049/1‑35 (MQ=255) cTGGCAGCAGGTTTTTCTGCGCTGTGACATACATc > 1:7236210/1‑35 (MQ=255) cTGGCAGCAGGTTTTTCTGCGCTGTGACATACATc < 1:9376238/35‑1 (MQ=255) cTGGCAGCAGGTTTTTCTGCGCTGTGACATACATc > 1:14009677/1‑35 (MQ=255) cTGGCAGCAGGTTTTTCTGCGCTGTGACATACATc > 1:20289576/1‑35 (MQ=255) tGGCAGCAGGTTTTTCTGCGCTGTGACATACATcc < 1:9301085/35‑1 (MQ=255) tGGCAGCAGGTTTTTCTGCGCTGTGACATACATcc < 1:11868785/35‑1 (MQ=255) tGGCAGCAGGTTTTTCTGCGCTGTGACATACATcc > 1:14725715/1‑35 (MQ=255) tGGCAGCAGGTTTTTCTGCGCTGTGACATACATcc < 1:7660340/35‑1 (MQ=255) ggCAGCAGGTTTTTCTGCGCTGTGACATACATccc > 1:11037711/1‑35 (MQ=255) ggCAGCAGGTTTTTCTGCGCTGTGACATACATccc > 1:753280/1‑35 (MQ=255) gcagcaGGTTTTTCTGCGCTGTGGCATACATCCcg < 1:12444750/35‑1 (MQ=255) gcagcaGGTTTTTCTGCGCTGTGACATACATCCcg < 1:10094435/35‑1 (MQ=255) gcagcaGGTTTTTCTGCGCTGTGACATACATCCcg > 1:1971480/1‑35 (MQ=255) gcagcaGGTTTTTCTGCGCTGTGACATACATCCcg < 1:517421/35‑1 (MQ=255) cagcagGTTTTTCTGCGCTGTGACATACATCCcgc > 1:19888593/1‑35 (MQ=255) cagcagGTTTTTCTGCGCTGTGACATACATCCcgc < 1:3071565/35‑1 (MQ=255) cagcagGTTTTTCTGCGCTGTGACATACATCCcgc > 1:3419913/1‑35 (MQ=255) cagcagGTTTTTCTGCGCTGTGACATACATCCcgc > 1:1190826/1‑35 (MQ=255) cagcagGTTTTTCTGCGCTGTGACATACATCCcgc > 1:13872909/1‑35 (MQ=255) agcagGTTTTTCTGCGCTGTGACATACATCCcgcg > 1:19735267/1‑35 (MQ=255) agcagGTTTTTCTGCGCTGTGACATACATCCcgcg < 1:4945817/35‑1 (MQ=255) gcagGTTTTTCTGCGCTGTGACATACATCCCGCga < 1:50841‑M2/31‑1 (MQ=255) cagGTTTTTCTGCGCTGTGACATACATCCCGCgag < 1:20433569‑M2/32‑1 (MQ=255) cagGTTTTTCTGCGCTGTGACATACATCCCGCgag > 1:4176488‑M2/4‑35 (MQ=255) agGTTTTTCTGCGCTGTGACATACGTCCCGCgaga < 1:1893952‑M2/33‑1 (MQ=255) agGTTTTTCTGCGCTGTGACATACATCCCGCgaga > 1:4967064‑M2/3‑35 (MQ=255) agGTTTTTCTGCGCTGTGACATACATCCCGCgaga < 1:3931588‑M2/33‑1 (MQ=255) agGTTTTTCTGCGCTGTGACATACATCCCGCgaga > 1:16178126‑M2/3‑35 (MQ=255) agGTTTTTCTGCGCTGTGACATACATCCCGCgaga > 1:6570085‑M2/3‑35 (MQ=255) ggTTTTTCTGCGCTGTGACATACAT‑CCGCGAGAAg > 1:544236/1‑35 (MQ=37) gTTTTTCTGCGCTGTGACATACATCCCGCGAGAAg < 1:7877784/35‑1 (MQ=255) gTTTTTCTGCGCTGTGACATACATCCCGCGAGAAg < 1:2236068/35‑1 (MQ=255) | TTTTGTTCATTTTAGCGAATGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGACATACATCCCGCGAGAAG > REL606/1543438‑1543506 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |