New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1306117 =70 (0.680)13 (0.140) 4/44 NT 14.3% coding (123/1461 nt) cls cardiolipin synthetase
?REL606 4085858 = 92 (0.980)intergenic (+56/‑93) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F

Only 100 of 125 total aligned reads displayed.

TAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTT  >  REL606/1306083‑1306151
                                  |                                  
 aatTCCGACTAACGGCAGAATGTAAATAATCAACa                                   <  1:13962563/35‑1 (MQ=255)
  atTCCGACTAACGGCAGAATGTAAATAATCAACAg                                  <  1:8819563/35‑1 (MQ=255)
  atTCCGACTAACGGCAGAATGTAAATAATCAACAg                                  <  1:8424435/35‑1 (MQ=255)
  atTCCGACTAACGGCAGAATGTAAATAATCAACAg                                  >  1:7914696/1‑35 (MQ=255)
  atTCCGACTAACGGCAGAATGTAAATAATCAACAg                                  <  1:3596789/35‑1 (MQ=255)
   ttCCGCCTAACGGCAGAATGTAAATAATCAACAGc                                 <  1:18797506/35‑1 (MQ=255)
   ttCCGACTAACGGCAGAATGTAAATAATCAACAGc                                 <  1:1060207/35‑1 (MQ=255)
   ttCCGACTAACGGCAGAATGTAAATAATCAACAGc                                 >  1:15783378/1‑35 (MQ=255)
   ttCCGACTAACGGCAGAATGTAAATAATCAACAGc                                 <  1:14305290/35‑1 (MQ=255)
   ttCCGACTAACGGCAGAATGTAAATAATCAAAAGc                                 >  1:1115156/1‑35 (MQ=255)
    tCCGACTAACGGCAGAATGTAAATAATCAACAGcc                                >  1:6066159/1‑35 (MQ=255)
     ccGACTAACGGCAGAATGTAAATAATTAACAGCCa                               >  1:17587474/1‑35 (MQ=255)
     ccGACTAACGGCAGAATGTAAATAATCAACAGCCa                               >  1:12195265/1‑35 (MQ=255)
     ccGACTAACGGCAGAATGTAAATAATCAACAGCCa                               >  1:1923148/1‑35 (MQ=255)
      cGACTAACGGCAGAATGTAAATAATCAACAGCCAg                              >  1:445457/1‑35 (MQ=255)
      cGACTAACGGCAGAATGTAAATAATCAACAGCCAg                              >  1:13627162/1‑35 (MQ=255)
       gACTAACGGCAGAATGTAAATAATCAACAGCCAgg                             >  1:5237698/1‑35 (MQ=255)
       gACTAACGGCAGAATGTAAATAATCAACAGCCAgg                             >  1:13422261/1‑35 (MQ=255)
        aCTAACGGCAGAATGTAAATAATCAACAGCCAGGc                            >  1:8668645/1‑35 (MQ=255)
        aCTAACGGCAGAATGTAAATAATCAACAGCCAGGc                            >  1:208230/1‑35 (MQ=255)
        aCTAACGGCAGAATGTAAATAATCAACAGCCAGGc                            >  1:12964549/1‑35 (MQ=255)
         cTAACGGCAGAATGTAAATAATCAACAGCCAGGcc                           >  1:6409886/1‑35 (MQ=255)
         cTAACGGCAGAATGTAAATAATCAACAGCCAGGcc                           >  1:639000/1‑35 (MQ=255)
         cTAACGGCAGAATGTAAATAATCAACAGCCAGGcc                           >  1:20052813/1‑35 (MQ=255)
          tAACGGCAGGATGTAAATAATCAACAGCCAGGCCa                          >  1:6639860/1‑35 (MQ=255)
          tAACGGCAGAATGTAAATAATCAACAGCCAGGCCa                          >  1:14046735/1‑35 (MQ=255)
          tAACGGCAGAATGTAAATAATCAACAGCCAGGCCa                          >  1:5578413/1‑35 (MQ=255)
          tAACGGCAGAATGTAAATAATCAACAGCCAGGCCa                          >  1:18824461/1‑35 (MQ=255)
           aaCGGCAGAATGTAAATAATCAACAGCCAGGCCAt                         >  1:11746193/1‑35 (MQ=255)
           aaCGGCAGAATGTAAATAATCAACAGCCAGGCCAt                         >  1:18149631/1‑35 (MQ=255)
            aCGGCAGAATGTAAATAATCAACAGCCAGGCCATc                        >  1:11184754/1‑35 (MQ=255)
            aCGGCAGAATGTAAATAATCAACAGCCAGGCCATc                        >  1:13093839/1‑35 (MQ=255)
             cGGCAGAATGTAAATAATCAACAGCCAGGCCATcg                       >  1:6571096/1‑35 (MQ=255)
             cGGCAGAATGTAAATAATCAACAGCCAGGCCATcg                       >  1:11338357/1‑35 (MQ=255)
             cGGCAGAATGTAAATAATCAACAGCCAGGCCATcg                       >  1:7303895/1‑35 (MQ=255)
              ggCAGAATGTAAATAATCAACAGCCAGGCCATcgc                      >  1:5771919/1‑35 (MQ=255)
              ggCAGAATGTAAATAATCAACAGCCAGGCCATcgc                      >  1:3965696/1‑35 (MQ=255)
              ggCAGAATGTAAATAATCAACAGCCAGGCCATcgc                      >  1:10172412/1‑35 (MQ=255)
               gCAGAATGTAAATAATCAACAGCCAGGCCATcgcg                     >  1:16830826/1‑35 (MQ=255)
               gCAGAATGTAAATAATCAACAGCCAGGCCATcgcg                     >  1:11102731/1‑35 (MQ=255)
                cAGAATGTAAATAATCAACAGCCAGGCCATCGCgg                    >  1:14823592/1‑35 (MQ=255)
                cAGAATGTAAATAATCAACAGCCAGGCCATCGCgg                    >  1:9087939/1‑35 (MQ=255)
                cAGAATGNAAATAATCAACAGCCAGGCCATCGCgg                    >  1:19714174/1‑35 (MQ=255)
                 aGAATGTAAATAATCAACAGCCAGGCCATCGCGGa                   >  1:1833002/1‑35 (MQ=255)
                 aGAATGTAAATAATCAACAGCCAGGCCATCGCGGa                   >  1:8766759/1‑35 (MQ=255)
                 aGAATGTAAATAATCAACAGCCAGGCCATCGCGGa                   >  1:8076877/1‑35 (MQ=255)
                  gAATGTAAATAATCAACAGCCAGGCCATCGCGGAg                  >  1:16491697/1‑35 (MQ=255)
                   aataaaaaaacccccCAGCCAGGCCATCGCGGAgg                 >  1:9171267‑M1/16‑35 (MQ=255)
                   aaTGTAAATAATCAACAGCCAGGCCATCGCGGGgg                 >  1:12385662/1‑35 (MQ=255)
                   aaTGTAAATAATCAACAGCCAGGCCATCGCGGAgg                 >  1:5651100/1‑35 (MQ=255)
                   aaTGTAAATAATCAACAGCCAGGCCATCGCGGAgg                 >  1:7135469/1‑35 (MQ=255)
                   aaTGTAAATAATCAACAGCCAGGCCATCGCGGAgg                 >  1:3587260/1‑35 (MQ=255)
                    aTGTAAATAATCAACAGCCAGGCCATCGCGGAggg                >  1:7382513/1‑35 (MQ=255)
                    aTGTAAATAATCAACAGCCAGGCCATCGCGGAggg                >  1:3334017/1‑35 (MQ=255)
                    aTGTAAATAATCAACAGCCAGGCCATCGCGGAggg                >  1:19019299/1‑35 (MQ=255)
                     taaaaaaacccccCAGCCAGGCCATCGCGGAGGGa               >  1:17184403‑M1/14‑35 (MQ=255)
                     tGTAAATAATCAACAGCCAGGCCATTGCGGAGGGa               >  1:165259/1‑35 (MQ=255)
                     tGTAAATAATCAACAGCCAGGCCATCGCGGAGGGa               >  1:13016304/1‑35 (MQ=255)
                      gTAAATAATCAACAGCCAGGCCATCGCGGAGGGaa              >  1:2542325/1‑35 (MQ=255)
                       tAAATAATCAACAGCCAGGCCATCGCGGAGGGAAc             >  1:2146022/1‑35 (MQ=255)
                       tAAATAATCAACAGCCAGGCCATCGCGGAGGGAAc             >  1:914983/1‑35 (MQ=255)
                       aaaaaacccccCAGCCAGGCCATCGCGGAGGGAAc             >  1:12491167‑M1/12‑35 (MQ=255)
                        aaaTAATCAACAGCCAGGCCATCGCGGAGGGAACt            >  1:16850131/1‑35 (MQ=255)
                        aaaTAATCAAAAGCCAGGCCATCGCGGAGGGAACt            <  1:15272088/35‑1 (MQ=255)
                         aataatCAACAGCCAGGCCATCGCGGAGGGAACTg           >  1:11023934/1‑35 (MQ=255)
                         aataatCAACAGCCAGGCCATCGCGGAGGGAACTg           >  1:6209943/1‑35 (MQ=255)
                         aaaaaccccCAGCCAGGCCATCGCGGAGGGAACTg           >  1:6439238‑M1/10‑35 (MQ=255)
                          ataatCAACAGCCAGGCCATCGCGGAGGGAACTgc          >  1:10541197/1‑35 (MQ=255)
                          ataatCAACAGCCAGGCCATCGCGGAGGGAACTgc          >  1:5521550/1‑35 (MQ=255)
                          ataatCAACAGCCAGGCCATCGCGGAGGGAACTgc          >  1:4441361/1‑35 (MQ=255)
                          aaacccccCAGCCAGGCCATCGCGGAGGGAACTgc          >  1:1968520‑M1/9‑35 (MQ=255)
                           taatCAACAGCCAGGCCATCGCGGAGGGAACTgcg         >  1:15985468/1‑35 (MQ=255)
                           cacccccCAGCCAGGCCATCGCGGAGGGAACTgcg         >  1:7444298‑M1/8‑35 (MQ=255)
                           caaccccCAGCCAGGCCATCGCGGAGGGAACTgcg         >  1:2733948‑M1/8‑35 (MQ=255)
                           accccccCAGCCAGGCCATCGCGGAGGGAACTgcg         >  1:18458544‑M1/8‑35 (MQ=255)
                           aacccccCAGCCAGGCCATCGCGGAGGGAACTgcg         >  1:9057604‑M1/8‑35 (MQ=255)
                           aacccccCAGCCAGGCCATCGCGGAGGGAACTgcg         >  1:14261561‑M1/8‑35 (MQ=255)
                            acccccCAGCCAGGCCATCGCGGAGGGAACTgcgc        >  1:4291942‑M1/7‑35 (MQ=255)
                            aatCAACAGCCAGGCCATCGCGGAGGGAACTgcgc        >  1:9440827/1‑35 (MQ=255)
                            aatCAACAGCCAGGCCATCGCGGAGGGAACTgcgc        >  1:13022158/1‑35 (MQ=255)
                            aatCAACAGCCAGGCCATCGCGGAGGGAACTgcgc        >  1:7867192/1‑35 (MQ=255)
                             cccccCAGCCAGGCCATCGCGGAGGGAACTGcgcg       >  1:8349529‑M1/6‑35 (MQ=255)
                             atCAACAGCCAGGCCATCGCGGAGGGAACTGcgcg       >  1:3220529/1‑35 (MQ=255)
                              ccccCAGCCAGGCCATCGCGGAGGGAACTGCGcgt      >  1:6593275‑M1/5‑35 (MQ=255)
                               cccCAGCCAGGCCATCGCGGAGGGAACTGCGcgtc     >  1:12083878‑M1/4‑35 (MQ=255)
                               cccCAGCCAGGCCATCGCGGAGGGAACTGCGcgtc     >  1:17602010‑M1/4‑35 (MQ=255)
                               cccCAGCCAGGCCATCGCGGAGGGAACTGCGcgtc     >  1:1483987‑M1/4‑35 (MQ=255)
                               cAACAGCCAGGCCATCGCGGAGGGAACTGCGcgtc     >  1:9245089/1‑35 (MQ=255)
                               cAACAGCCAGGCCATCGCGGAGGGAACTGCGcgtc     >  1:1845119/1‑35 (MQ=255)
                                ccCAGCCAGGCCATCGCGGAGGGAACTGCGcgtcg    >  1:10384456‑M1/3‑35 (MQ=255)
                                ccCAGCCAGGCCATCGCGGAGGGAACTGCGcgtcg    >  1:4683898‑M1/3‑35 (MQ=255)
                                ccCAGCCAGGCCATCGCGGAGGGAACTGCGcgtcg    >  1:4614712‑M1/3‑35 (MQ=255)
                                acCAGCCAGGCCATCGCGGAGGGAACTGCGcgtcg    >  1:11228668‑M1/3‑35 (MQ=255)
                                aaCAGCCAGGCCATCGCGGAGGGAACTGCGcgtcg    >  1:7309884/1‑35 (MQ=255)
                                aaCAGCCAAGCCATCGCGGAGGGAACTGCGcgtcg    >  1:7136675/1‑35 (MQ=255)
                                 aCAGCCAGGCCATCGCGGAGGGAACTGCGcgtcgt   >  1:11250049/1‑35 (MQ=255)
                                  CAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGtt  <  1:15948393‑M1/35‑1 (MQ=255)
                                  CAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGtt  >  1:2289914‑M1/1‑35 (MQ=255)
                                  CAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGtt  >  1:5157731‑M1/1‑35 (MQ=255)
                                  CAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGtt  <  1:17816486‑M1/35‑1 (MQ=255)
                                  |                                  
TAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTT  >  REL606/1306083‑1306151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.