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breseq version 0.26.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Marginal read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,721,831 | 0 | C→T | 8.1% | 25.8 ‑42.0 ‑0.0 | 233 | S194F (TCT→TTT) | srlE | glucitol/sorbitol‑specific enzyme IIB component of PTS |
* | REL606 | 4,557,629 | 0 | T→G | 100.0% | 21.9 | 27 | T53P (ACC→CCC) | yjiW | hypothetical protein |
* | REL606 | 2,767,883 | 0 | G→T | 6.5% | 20.7 ‑30.3 0.0 | 242 | L106M (CTG→ATG) | ygbE | conserved inner membrane protein |
* | REL606 | 864,069 | 0 | T→G | 100.0% | 12.7 | 17 | V184G (GTG→GGG) | yliC | predicted peptide transporter subunit: membrane component of ABC superfamily |
* | REL606 | 2,759,856 | 0 | T→G | 7.2% | 11.5 ‑41.6 0.0 | 260 | F254V (TTT→GTT) | ygbM | hypothetical protein |
* | REL606 | 2,724,423 | 0 | A→C | 8.5% | 8.7 ‑47.9 0.0 | 263 | T173P (ACC→CCC) | srlR | DNA‑bindng transcriptional repressor |
* | REL606 | 1,111,095 | 0 | C→G | 100.0% | 8.4 | 17 | G94A (GGC→GCC) | insF‑1 | putative transposase for IS3 |
* | REL606 | 664,687 | 0 | T→G | 1.9% | 7.7 ‑3.3 ‑0.0 | 318 | intergenic (‑78/‑48) | gltL/insJ‑2 | ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein |
* | REL606 | 3,660,230 | 0 | T→G | 100.0% | 7.3 | 15 | T332P (ACC→CCC) | xylA | xylose isomerase |
* | REL606 | 2,726,999 | 1 | .→C | 1.9% | 7.0 ‑8.5 ‑0.0 | 215 | coding (151/1515 nt) | ygaA | anaerobic nitric oxide reductase transcription regulator |
* | REL606 | 2,732,320 | 0 | G→C | 4.9% | 6.2 ‑14.9 ‑0.0 | 222 | intergenic (‑35/+118) | hypF/hydN | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
* | REL606 | 2,520,681 | 1 | .→T | 1.6% | 6.1 ‑0.5 ‑0.2 | 183 | intergenic (‑93/‑53) | dapA/gcvR | dihydrodipicolinate synthase/DNA‑binding transcriptional repressor, regulatory protein accessory to GcvA |
* | REL606 | 2,766,958 | 1 | .→C | 1.5% | 5.8 0.0 ‑0.2 | 194 | coding (394/711 nt) | ispD | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase |
* | REL606 | 2,757,213 | 0 | A→T | 4.9% | 4.1 ‑17.3 ‑0.0 | 241 | I7F (ATC→TTC) | ygbK | hypothetical protein |
* | REL606 | 2,737,112 | 0 | T→G | 6.8% | 3.2 ‑31.1 0.0 | 247 | C421W (TGT→TGG) | ascB | cryptic 6‑phospho‑beta‑glucosidase |
* | REL606 | 2,752,054 | 0 | T→G | 6.4% | 2.7 ‑34.2 0.0 | 270 | G34G (GGT→GGG) | mutS | DNA mismatch repair protein |
* | REL606 | 2,775,409 | 0 | T→G | 100.0% | 2.6 | 10 | D141A (GAC→GCC) | insJ‑3 | IS150 hypothetical protein |
* | REL606 | 2,724,156 | 0 | G→C | 3.4% | 2.4 ‑14.5 0.0 | 241 | A84P (GCT→CCT) | srlR | DNA‑bindng transcriptional repressor |
* | REL606 | 714,015 | 0 | G→A | 100.0% | 2.2 | 1 | D18N (GAC→AAC) | ybfO | conserved protein, rhs‑like |
* | REL606 | 2,847,252 | 1 | .→A | 1.0% | 2.2 ‑1.5 ‑0.0 | 209 | coding (3371/3543 nt) | recB | exonuclease V (RecBCD complex), beta subunit |
* | REL606 | 1,271,354 | 1 | .→G | 1.9% | 1.8 ‑1.5 ‑0.0 | 159 | coding (645/1101 nt) | chaA | calcium/sodium:proton antiporter |
* | REL606 | 3,827,928 | 1 | .→T | 1.1% | 1.7 0.0 ‑0.0 | 183 | intergenic (‑145/‑161) | ibpA/yidQ | heat shock chaperone/conserved outer membrane protein |
* | REL606 | 2,775,410 | 0 | C→G | 100.0% | 1.1 | 9 | D141H (GAC→CAC) | insJ‑3 | IS150 hypothetical protein |
* | REL606 | 3,398,694 | 1 | .→G | 100.0% | 1.1 | 1 | coding (541/1185 nt) | tuf | protein chain elongation factor EF‑Tu (duplicate of tufB) |
* | REL606 | 3,398,700 | 0 | G→T | 100.0% | 1.1 | 1 | L179M (CTG→ATG) | tuf | protein chain elongation factor EF‑Tu (duplicate of tufB) |
* | REL606 | 554,377 | 0 | T→G | 100.0% | 1.0 | 8 | V846G (GTG→GGG) | ECB_00512 | putative tail component of prophage |
* | REL606 | 3,398,693 | 1 | .→A | 100.0% | 1.0 | 1 | coding (542/1185 nt) | tuf | protein chain elongation factor EF‑Tu (duplicate of tufB) |
* | REL606 | 2,739,541 | 0 | C→A | 2.5% | 0.9 ‑1.3 ‑0.2 | 246 | A24A (GCG→GCT) | hycF | formate hydrogenlyase complex iron‑sulfur protein |
* | REL606 | 2,750,816 | 0 | A→C | 4.4% | 0.7 ‑30.1 0.0 | 232 | Y540S (TAC→TCC) | fhlA | DNA‑binding transcriptional activator |
* | REL606 | 1,498,115 | 0 | T→G | 100.0% | 0.6 | 7 | V11G (GTG→GGG) | ECB_01413 | conserved hypothetical protein |
* | REL606 | 378,366 | 1 | .→G | 1.3% | 0.3 ‑1.7 ‑0.0 | 159 | coding (77/912 nt) | rdgC | recombination associated protein |
* | REL606 | 2,728,186 | 1 | .→G | 1.2% | 0.3 ‑4.9 ‑0.0 | 169 | coding (851/1440 nt) | norV | anaerobic nitric oxide reductase flavorubredoxin |
* | REL606 | 554,531 | 0 | T→G | 100.0% | 0.2 | 2 | S897R (AGT→AGG) | ECB_00512 | putative tail component of prophage |
* | REL606 | 554,617 | 0 | T→G | 100.0% | 0.2 | 3 | V926G (GTG→GGG) | ECB_00512 | putative tail component of prophage |
* | REL606 | 573,202 | 0 | T→G | 100.0% | 0.2 | 2 | H96P (CAC→CCC) | ECB_00530 | conserved hypothetical protein |
* | REL606 | 1,111,290 | 0 | C→G | 100.0% | 0.2 | 2 | R29P (CGC→CCC) | insF‑1 | putative transposase for IS3 |
* | REL606 | 2,775,842 | 0 | T→A | 100.0% | 0.1 | 3 | intergenic (‑12/+237) | insJ‑3/cysH | IS150 hypothetical protein/phosphoadenosine phosphosulfate reductase |
* | REL606 | 429,719 | 0 | G→A | 100.0% | ‑0.1 | 1 | L357L (CTG→TTG) | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,074 | 0 | G→T | 100.0% | ‑0.1 | 1 | A238A (GCC→GCA) | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,075 | 0 | G→T | 100.0% | ‑0.1 | 1 | A238D (GCC→GAC) | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 557,789 | 0 | C→A | 100.0% | ‑0.1 | 1 | C147* (TGC→TGA) | ECB_00515 | conserved hypothetical protein |