New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1609469 =55 (0.540)5 (0.060) 3/42 NT 9.8% coding (36/207 nt) ybcW predicted protein
?REL606 2545121 = 44 (0.490)coding (1259/2067 nt) ppk polyphosphate kinase

Only 100 of 107 total aligned reads displayed.

GAAGCCAACATTCACTGGGCGAAGCGCCTGACAGAAGCAGGCGTGCACGTTATCTTCTCTGCGCCGGGG  >  REL606/2545087‑2545155
                                  |                                  
gaagCCAACATTCACTGGGCGAAGCGCCTGACAGa                                    >  1:9066515/1‑35 (MQ=255)
gaagCCAACATTCACTGGGCGAAGCGCCTGACAGa                                    >  1:13760873/1‑35 (MQ=255)
 aagCCAACATTCACTGGGCGAAGCGCCTGACAGaa                                   >  1:16557597/1‑35 (MQ=255)
   gCCAACATTCACTGGGCGAAGCGCCTGACAGAAGc                                 >  1:15919787/1‑35 (MQ=255)
   gCCAACATTCACTGGGCGAAGCGCCTGACAGAAGc                                 >  1:10842587/1‑35 (MQ=255)
   gCCAACATTCACTGGGCGAAGCGCCTGACAGAAGc                                 >  1:15458498/1‑35 (MQ=255)
   gCCAACATTCACTGGGCGAAGCGCCTGACAGAAGc                                 >  1:6256805/1‑35 (MQ=255)
    ccAACATTCACTGGGCGAAGCGCCTGACAGAAGCa                                >  1:6607398/1‑35 (MQ=255)
    ccAACATTCACTGGGCGAAGCGCCTGACAGAAGCa                                >  1:5357790/1‑35 (MQ=255)
     cAACATTCACTGGGCGAAGCGCCTGACAGAAGCAg                               >  1:16529040/1‑35 (MQ=255)
     cAACATTCACTGGGCGAAGCGCCTGACAGAAGCAg                               >  1:17452885/1‑35 (MQ=255)
      aaCATTCACTGGGCGAAGCGCCTGACAGAAGCAgg                              >  1:12960870/1‑35 (MQ=255)
        cATTCACTGGGCGAAGCGCCTGACAGAAGCAGGCg                            >  1:19974216/1‑35 (MQ=255)
        cATTCACTGGGCGAAGCGCCTGACAGAAGCAGGCg                            >  1:3338727/1‑35 (MQ=255)
         aTTCACTGGGCGAAGCGCCTGACAGAAGCAGGCGt                           >  1:13914920/1‑35 (MQ=255)
         aTTCACTGGGCGAAGCGCCTGACAGAAGCAGGCGt                           >  1:10529990/1‑35 (MQ=255)
         aTTCACTGGGCGAAGCGCCTGACAGAAGCAGGCGt                           >  1:620025/1‑35 (MQ=255)
         aTTCACTGGGCGAAGCGCCTGACAGAAGCAGGCGt                           >  1:6255790/1‑35 (MQ=255)
             aCTGGGCGAAGCGCCTGACAGAAGCATGCGTGCAc                       >  1:7046581/1‑35 (MQ=255)
             aCTGGGCGAAGCGCCTGACAGAAGCAGGCGTGCAc                       >  1:9476329/1‑35 (MQ=255)
             aCTGGGCGAAGCGCCTGACAGAAGCAGGCGTGCAc                       >  1:1894363/1‑35 (MQ=255)
              cTGGGCGAAGCGCCTGACAGAAGCAGTCGTGCACg                      >  1:2905388/1‑35 (MQ=255)
               tGGGCGAAGCGCCTGACAGAAGCAGGCGTGCACGt                     >  1:9246620/1‑35 (MQ=255)
                tggCAAACCGCCTGACAGAAGCAGGCGTGCACGtt                    <  1:13807205/34‑1 (MQ=25)
                gggCGAANCGCCTGACAGAAGCAGGCGTGCACGtt                    >  1:19533157/1‑35 (MQ=255)
                gggCGAAGCGCCTGACAGAAGCAGGCGTGCACGtt                    >  1:18393660/1‑35 (MQ=255)
                 ggCGAAGCGCCTGACAGAAGCAGGCGTGCACGTTa                   <  1:14315840/35‑1 (MQ=255)
                 ggCGAAGCGCCTGACAGAAGCAGGCGTGCACGTTa                   >  1:17623673/1‑35 (MQ=255)
                  gCGAAGCGCCTGACAGAAGCAGGCGTGCACGTTAt                  >  1:6698024/1‑35 (MQ=255)
                  gCGAAGCGCCTGACAGAAGCAGGCGTGCACGTTAt                  >  1:10806612/1‑35 (MQ=255)
                   cGAAGCGCCTGACAGAAGCAGGCGTGCACGTTAtc                 <  1:18654413/35‑1 (MQ=255)
                   cGAAGCGCCTGACAGAAGCAGGCGTGCACGTTAtc                 >  1:353930/1‑35 (MQ=255)
                   cGAACCCCCTGCCAGAAGCAGGCGTGCACGTTAtc                 <  1:20288351/35‑1 (MQ=21)
                    gAAGCGCCTGACAGAAGCAGGCGTGCACGTTAtct                >  1:18494573/1‑35 (MQ=255)
                    gAAGCGCCTGACAGAAGCAGGCGTGCACGTTAtct                >  1:2224605/1‑35 (MQ=255)
                    gAAGCGCCTGACAGAAGCAGGCGTGCACGTTAtct                >  1:1400575/1‑35 (MQ=255)
                    gAAGCGCCTGACAGAAGCAGGCGTGCACGTTAtct                >  1:12420882/1‑35 (MQ=255)
                    gAAGCCCCTGCCAGAAGCAGGCGTGCACGTTAtct                <  1:6769521/35‑1 (MQ=25)
                     aggcgcCTGCCAGAAGCAGGCGTGCACGTTAtctt               <  1:2135508/33‑1 (MQ=38)
                     aaGCGCCTGACAGAAGCAGGCGTGCACGTTAtctt               >  1:14112362/1‑35 (MQ=255)
                     aaGCGCCTGACAGAAGCAGGCGTGCACGTTAtctt               >  1:13602212/1‑35 (MQ=255)
                     aaGCGCCTGACAGAAGCAGGCGTGCACGTTAtctt               >  1:9323986/1‑35 (MQ=255)
                     aaGCGCCTGACAGAAGCAGGCGTGCACGTTAtctt               >  1:2615949/1‑35 (MQ=255)
                     aaGCGCCTGACAGAAGCAGGCGTGCACGTTAtctt               >  1:1104466/1‑35 (MQ=255)
                      aGCGCCTGACAGAAGCAGGCGTGCCCGTTAtcttc              >  1:3087350/1‑35 (MQ=255)
                       gcccctgccagAAGCAGGCGTGCACGTTAtcttct             <  1:6431477‑M2/24‑1 (MQ=255)
                       ccgcctcccagAAGCAGGCGTGCACGTTAtcttct             <  1:10682974‑M2/24‑1 (MQ=255)
                       ccccctgccagAAGCAGGCGTGCACGTTAtcttct             <  1:9476731‑M2/24‑1 (MQ=255)
                       ccccctcccagAAGCAGGCGTGCACGTTAtcttct             <  1:9340590‑M2/24‑1 (MQ=255)
                        cgcCTGACAGAAGCAGGCGTGCACGTTATCTtctc            >  1:12556703/1‑35 (MQ=255)
                        cccctcccagAAGCAGGCGTGCACGTTATCTtctc            <  1:6756755‑M2/25‑1 (MQ=255)
                         gcCTTACAGAAGCAGGCGTGCACGTTATCTTctct           >  1:16301933/1‑35 (MQ=255)
                         gcCTGACAGAAGCAGGCGTGCACGTTATCTTctct           >  1:8989262/1‑35 (MQ=255)
                         gcCTGACAGAAGCAGGCGTGCACGTTATCTTctct           >  1:16060207/1‑35 (MQ=255)
                         gcCTGACAGAAGCAGGCGTGCACGTTATCTTctct           >  1:15325806/1‑35 (MQ=255)
                         ccctgccagAAGCAGGCGTGCACGTTATCTTctct           <  1:17710880‑M2/26‑1 (MQ=255)
                          cctgccagAAGCAGGCGTGCACGTTATCTTCTCTg          <  1:10828342‑M2/27‑1 (MQ=255)
                          ccgcccagAAGCAGGCGTGCACGTTATCTTCTCTg          <  1:3444392‑M2/27‑1 (MQ=255)
                          ccTGACAGAAGCAGGCGTGCACGTTATCTTatctc          >  1:1482241/1‑34 (MQ=255)
                           ctgccagAAGCAGGCGTGCACGTTATCTTCTCTgc         <  1:16247093‑M2/28‑1 (MQ=255)
                           ctcccagAAGCAGGCGTGCACGTTATCTTCTCTgc         <  1:9277082‑M2/28‑1 (MQ=255)
                           ctcccagAAGCAGGCGTGCACGTTATCTTCTCTgc         <  1:1431097‑M2/28‑1 (MQ=255)
                           ctcccagAAGCAGGCGTGCACGTTATCTTCTCTgc         <  1:12419557‑M2/28‑1 (MQ=255)
                           cTGACAGAAGCAGGCGTGCACGTTATCTTCTCTgc         >  1:14654761/1‑35 (MQ=255)
                            tgccagAAGCAGGCGTGCACGTTATCTTCTCTgcg        <  1:9413159‑M2/29‑1 (MQ=255)
                            tgccagAAGCAGGCGTGCACGTTATCTTCTCTgcg        <  1:5585775‑M2/29‑1 (MQ=255)
                            tcccagAAGCAGGCGTGCACGTTATCTTCTCTgcg        <  1:3755660‑M2/29‑1 (MQ=255)
                            tcccagAAGCAGGCGTGCACGTTACCTTCTCTgcg        <  1:10785066‑M2/29‑1 (MQ=255)
                            tGACAGAAGCAGGCGTGCACGTTATCTTCTCTgcg        >  1:15737394/1‑35 (MQ=255)
                            tGACAGAAGCAGGCGTGCACGTTATCTTCTCTgcg        >  1:11348822/1‑35 (MQ=255)
                            tGACAGAAGCAGGCGTGCACGTTATCTTCTCTgcg        >  1:19233950/1‑35 (MQ=255)
                            tGACAGAAGCAGGCGTGCACGTTATCTTCTCTgcg        >  1:3546738/1‑35 (MQ=255)
                            tGACAGAAGCAGGCGTGCACGTTATCTTCTCTgcg        >  1:5355532/1‑35 (MQ=255)
                            cgccagAAGCAGGCGTGCACGTTATCTTCTCTgcg        <  1:15462533‑M2/29‑1 (MQ=255)
                             cccagAAGCAGGCGTGCACGTTATCTTCTCTgcgc       <  1:7420024‑M2/30‑1 (MQ=255)
                             accagAAGCAGGCGTGCACGTTATCTTCTCTgcgc       <  1:19660272‑M2/30‑1 (MQ=255)
                              ccagAAGCAGGCGTGCACGTTATCTTCTCTGCGcc      <  1:16472067‑M2/31‑1 (MQ=255)
                              ccagAAGCAGGCGTGCACGTTATCTTCTCTGCGcc      <  1:8438448‑M2/31‑1 (MQ=255)
                              ccagAAGCAGGCGTGCACGTTATCTTCTCTGCGcc      <  1:8241151‑M2/31‑1 (MQ=255)
                              ccagAAGCAGGCGTGCACGTTATCTTCTCTGCGcc      <  1:11960714‑M2/31‑1 (MQ=255)
                              aCAGAAGCAGGCGTGCACGTTATCTTCTCTGCGcc      >  1:19474871/1‑35 (MQ=255)
                              aCAGAAGCAGGCGTGCACGTTATCTTCTCTGCGcc      >  1:15632905/1‑35 (MQ=255)
                               cagAAGCAGGCGTGCACGTTATCTTCTCTGCGCCg     >  1:16068402‑M2/4‑35 (MQ=255)
                               cagAAGCAGGCGTGCACGTTATCTTCTCTGCGCCg     <  1:16874693‑M2/32‑1 (MQ=255)
                               cagAAGCAGGCGTGCACGTTATCTTCTCTGCGCCg     <  1:1236060‑M2/32‑1 (MQ=255)
                               cagAAGCAGGCGTGCACGTTATCTTCTCTGCGCCg     >  1:13259693‑M2/4‑35 (MQ=255)
                               cagAAGCAGGCGTGCACGTTATCTTCTCTGCGCCg     >  1:6265230‑M2/4‑35 (MQ=255)
                               cagAAGCAGGCGTGCACGTTATCTTCTCTGCGCCg     >  1:18488758‑M2/4‑35 (MQ=255)
                               cagAAGCAGGCGTGCACGTTATCTTCTCTGCGCCg     >  1:13175194‑M2/4‑35 (MQ=255)
                                agAAGCAGGCGTGCACGTTATCTTCTCTGCGCCgg    >  1:9290921‑M2/3‑35 (MQ=255)
                                agAAGCAGGCGTGCACGTTATCTTCTCTGCGCCgg    <  1:12677065‑M2/33‑1 (MQ=255)
                                agAAGCAGGCGTGCACGTTATCTTCTCTGCGCCgg    <  1:11633055‑M2/33‑1 (MQ=255)
                                agAAGCAGGCGTGCACGTTATCTTCTCTGCGCCgg    <  1:17756231‑M2/33‑1 (MQ=255)
                                 gAAGCAGGCGTGCACGTTATCTTCTCTGCGCCggg   <  1:9146927‑M2/34‑1 (MQ=255)
                                 gAAGCAGGCGTGCACGTTATCTTCTCTGCGCCggg   >  1:8718516‑M2/2‑35 (MQ=255)
                                 gAAGCAGGCGTGCACGTTATCTTCTCTGCGCCggg   <  1:17561066‑M2/34‑1 (MQ=255)
                                 gAAGCAGGCGTGCACGTTATCTTCTCTGCGCCggg   >  1:7237557‑M2/2‑35 (MQ=255)
                                 gAAGCAGGCGTGCACGTTATCTTCTCTGCGCCggg   >  1:4474336‑M2/2‑35 (MQ=255)
                                  aaGCAGGCGTGCACGTTATCTTCTCTGCGCCgggg  >  1:12270541/1‑35 (MQ=255)
                                  aaGCAGGCGTGCACGTTATCTTCCCTGCGCCgggg  >  1:7038759/1‑35 (MQ=255)
                                  |                                  
GAAGCCAACATTCACTGGGCGAAGCGCCTGACAGAAGCAGGCGTGCACGTTATCTTCTCTGCGCCGGGG  >  REL606/2545087‑2545155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.