New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3615477 =121 (1.180)11 (0.110) 4/48 NT 10.1% coding (3189/3474 nt) bcsC cellulose synthase subunit
?REL606 = 3947083 74 (0.720)coding (724/1656 nt) aslA acrylsulfatase‑like enzyme

Only 100 of 144 total aligned reads displayed.

CGCACGGCATGAACGTCATCTTTGCTGAACGGCAGTTTTTGGATGTATTCAGAACGATCCGGGCTCAGG  >  REL606/3947049‑3947117
                                  |                                   
cgcACGGCATGAACGTCATCTTTGCTGAACGGCAg                                     >  1:18907926/1‑35 (MQ=255)
cgcACGGCATGAACGTCATCTTTGCTGAACGGCAg                                     >  1:15897162/1‑35 (MQ=255)
cgcACGGCATGAACGTCATCTTTGCTGAACGGCAg                                     >  1:15925854/1‑35 (MQ=255)
cgcACGGCATGAACGTCATCTTTGCTGAACGGCAg                                     >  1:18727865/1‑35 (MQ=255)
 gcACGGCATGAACGTCATCTTTGCTGAACGGCAGt                                   <  1:13145323/35‑1 (MQ=255)
 gCACGGCATGAACGTCATCTTTGCTGAACGGCAGg                                    <  1:20449305‑M2/35‑2 (MQ=255)
 gCACGGCATGAACGTCATCTTTGCTGAACGGCAGg                                    <  1:4638967‑M2/35‑2 (MQ=255)
 gCACGGCATGAACGTCATCTTTGCTGAACGGCAGg                                    <  1:3672730‑M2/35‑2 (MQ=255)
  cACGGCATGAACGTCATCTTTGCTGAACGGCAGgg                                   <  1:16168894‑M2/35‑3 (MQ=255)
  cACGGCATGAACGTCATCTTTGCTGAACGGCAGgg                                   <  1:4069072‑M2/35‑3 (MQ=255)
  cACGGCATGAACGTCATCTTTGCTGAACGGCAGgg                                   <  1:12131706‑M2/35‑3 (MQ=255)
  cACGGCATGAACGTCATCTTTGCTGAACGGCAGgg                                   <  1:6411379‑M2/35‑3 (MQ=255)
  cACGGCATGAACGTCATCTTTGCTGAACGGCAGgg                                   <  1:6600737‑M2/35‑3 (MQ=255)
  cACGGCATGAACGTCATCTTTGCTGAACGGCAGgg                                   <  1:757128‑M2/35‑3 (MQ=255)
   aCGGCATGAACGTCATCTTTGCTGAACGGCAGggt                                  <  1:3757545‑M2/35‑4 (MQ=255)
   aCGGCATGAACGTCATCTTTGCTGAACGGCAGggg                                  <  1:3412097‑M2/35‑4 (MQ=255)
   aCGGCATGAACGTCATCTTTGCTGAACGGCAGggg                                  <  1:16518166‑M2/35‑4 (MQ=255)
   aCGGCATGAACGTCATCTTTGCTGAACGGCAGttt                                 <  1:18618370/35‑1 (MQ=255)
   aCGGCATGAACGTCATCTTTGCTGAACGGCAGttt                                 <  1:16908244/35‑1 (MQ=255)
   aCGGCATGAACGTCATCTTTGCTGAACGGCAGttt                                 <  1:12652360/35‑1 (MQ=255)
   aCGGCATGAACGTCATCTTTGCTGAACGGCAGttt                                 <  1:15200034/35‑1 (MQ=255)
    cGGCATGAACGTCATCTTTGCTGAACGGCAGgggt                                 <  1:16437497‑M2/35‑5 (MQ=255)
    cGGCATGAACGTCATCTTTGCTGAACGGCAGgggt                                 <  1:17752810‑M2/35‑5 (MQ=255)
    cGGCATGAACGTCATCTTTGCTGAACGGCAGgggg                                 <  1:10053253‑M2/35‑5 (MQ=255)
    cGGCATGAACGTCATCTTTGCTGAACGGCAGtttt                                <  1:14499411/35‑1 (MQ=255)
     ggCATGAACGTCATCTTTGCTGAACGGCAGgggtt                                <  1:230793‑M2/35‑6 (MQ=255)
     ggCATGAACGTCATCTTTGCTGAACGGCAGgggtt                                <  1:10025650‑M2/35‑6 (MQ=255)
     ggCATGAACGTCATCTTTGCTGAACGGCAGggggt                                <  1:13436441‑M2/35‑6 (MQ=255)
      gCATGAACGTCATCTTTGCTGAACGGCAGggtttt                               <  1:741744‑M2/35‑7 (MQ=255)
       cATGAACGTCATCTTTGCTGAACGGCAGggttttg                              <  1:17485750‑M2/35‑8 (MQ=255)
       cATGAACGTCATCTTTGCTGAACGGCAGTTTTTgg                             <  1:13853680/35‑1 (MQ=255)
       cATGAACGTCATCTTTGCTGAACGGCAGTTTTTgg                             <  1:2640574/35‑1 (MQ=255)
        aTGAACGTCATCTTTGCTGAACGGCAGggtttggg                             <  1:9874127‑M2/35‑9 (MQ=255)
        aTGAACGTCATCTTTGCTGAACGGCAGTTTTTGGa                            <  1:8314775/35‑1 (MQ=255)
        aTGAACGTCATCTTTGCTGAACGGCAGTTTTTGGa                            <  1:7826303/35‑1 (MQ=255)
        aTGAACGTCATCTTTGCTGAACGGCAGTTTTTGGa                            <  1:12634575/35‑1 (MQ=255)
           agcGTCATCTTTGCTGAACGGCAGTTTTTGGATGt                         <  1:13706149/33‑1 (MQ=255)
           aaCGTCATCTTTGCTGAACGGCAGggttttggttt                          <  1:13041534‑M2/35‑12 (MQ=255)
           aaCGTCATCTTTGCTGAACGGCAGgggtttggtgg                          <  1:15384373‑M2/35‑12 (MQ=255)
           aaCGTCATCTTTGCTGAACGGCAGgggtttggtgg                          <  1:17303595‑M2/35‑12 (MQ=255)
             cGTCATCTTTGCTGAACGGCAGggttttggtgggt                        <  1:5558885‑M2/35‑14 (MQ=255)
             cGTCATCTTTGCTGAACGGCAGTTTTTGGATGTAt                       <  1:18914218/35‑1 (MQ=255)
             cGTCATCTTTGCTGAACGGCAGTTTTTGGATGTAt                       <  1:8964069/35‑1 (MQ=255)
             cGTCATCTTTGCTGAACGGCAGTTTTTGGATGTAt                       <  1:7733103/35‑1 (MQ=255)
              gTCATCTTTGCTGAACGGCAGggttttggtgggtg                       <  1:5238842‑M2/35‑15 (MQ=255)
              gTCATCTTTGCTGAACGGCAGTTTTTGGATGTAtt                      <  1:17205834/35‑1 (MQ=255)
              gTCATCTTTGCTGAACGGCAGTTTTTGGATGTAtt                      <  1:2930999/35‑1 (MQ=255)
               tCATCTTTGCTGAACGGCAGTTTTTGGATGTATTc                     <  1:19515411/35‑1 (MQ=255)
               tCATCTTTGCTGAACGGCAGTTTTTGGATGTATTc                     <  1:1330388/35‑1 (MQ=255)
                cATCTTTGCTGAACGGCAGTTTTTGGATGTATTCa                    <  1:18320539/35‑1 (MQ=255)
                cATCTTTGCTGAACGGCAGTTTTTGGATGTATTCa                    <  1:13710209/35‑1 (MQ=255)
                cATCTTTGCTGAACGGCAGTTTTTGGATGTATTCa                    <  1:12967294/35‑1 (MQ=255)
                 aTCTTTGCTGAACTGCAGTTTTTGGATGTATTCAg                   >  1:16252848/1‑35 (MQ=255)
                  tCTTTGCTGAACGGCAGTTTTTTGGATGTATTCAg                   <  1:15224029/35‑1 (MQ=37)
                  tCTTTGCTGAACGGCAGTTTTTGGATGTATTCAGa                  <  1:11830229/35‑1 (MQ=255)
                  tCTTTGCTGAACGGCAGTTTTTGGATGTATTCAGa                  <  1:8140916/35‑1 (MQ=255)
                   cTTTGCTGAACGGCAGTTTTTGGATGTATTCAGaa                 <  1:2098064/35‑1 (MQ=255)
                   cTTTGCTGAACGGCAGTTTTTGGATGTATACAGaa                 <  1:2193584/35‑1 (MQ=255)
                    tttGCTGAACGGCAGTTTTTGGATGTATTCAGAAc                <  1:15641470/35‑1 (MQ=255)
                    tttGCTGAACGGCAGTTTTTGGATGTATTCAGAAc                <  1:6842072/35‑1 (MQ=255)
                    tttGCTGAACGGCAGTTTTTGGATGTATTCAGAAc                <  1:2639314/35‑1 (MQ=255)
                     ttGCTGAACGGCAGTTTTTGGATGTATTCAGAACg               <  1:11692173/35‑1 (MQ=255)
                     ttGCTGAACGGCAGTTTTTGGATGTATTCAGAACg               <  1:14233988/35‑1 (MQ=255)
                     ttGCTGAACGGCAGTTTTTGGATGTATTCAGAACg               <  1:4430750/35‑1 (MQ=255)
                     ttGCTGAACGGCAGTTTTTGGATGTATTCAGAACg               <  1:1217725/35‑1 (MQ=255)
                      tGCTGAACGGCAGTTTTTGGATGTATTCAGAACGa              <  1:11605330/35‑1 (MQ=255)
                      tGCTGAACGGCAGTTTTTGGATGTATTCAGAACGa              <  1:20440519/35‑1 (MQ=255)
                      tGCTGAACGGCAGTTTTTGGATGTATTCAGAACGa              <  1:4020805/35‑1 (MQ=255)
                      tGCTGAACGGCAGTTTTTGGATGTATTCAGAACGa              <  1:17492731/35‑1 (MQ=255)
                       gCTGAACGGCAGTTTTTGGATGTATTCAGAACGAt             <  1:2153040/35‑1 (MQ=255)
                       gCTGAACGGCAGTTTTTGGATGTATTCAGAACGAt             <  1:12833221/35‑1 (MQ=255)
                        cTGAACGGCAGTTTTTGGATGTATTCAGAACGATc            <  1:10195758/35‑1 (MQ=255)
                         tGAACGGCAGTTTTTGGATGTATTCAGAACGATcc           <  1:2341593/35‑1 (MQ=255)
                         tGAACGGCAGTTTTTGGATGTATTCAGAACGATcc           <  1:17640136/35‑1 (MQ=255)
                         tGAACGGCAGTTTTTGGATGTATTCAGAACGATcc           <  1:14496857/35‑1 (MQ=255)
                         tGAACGGCAGTTTTTGGATGTATTCAGAACGATcc           <  1:1665225/35‑1 (MQ=255)
                          gAACGGCAGTTTTTGGATGTATTCAGAACGATCCg          <  1:8426423/35‑1 (MQ=255)
                          gAACGGCAGTTTTTGGATGTATTCAGAACGATCCg          <  1:16902545/35‑1 (MQ=255)
                          gAACGGCAGTTTTTGGATGTATTCAGAACGATCCg          <  1:18328841/35‑1 (MQ=255)
                          gAACGGCAGTTTTTGGATGTATTCAGAACGATCCg          <  1:5315279/35‑1 (MQ=255)
                          gAACGGCAGTTTTTGGATGTATTCAGAACGATCCg          <  1:1921653/35‑1 (MQ=255)
                           aaCGGCAGTTTTTGGATGTATTCCGAACGATCCgg         <  1:1390357/35‑1 (MQ=255)
                           aaCGGCAGTTTTTGGATGTATTCAGAACGATCCgg         <  1:10430538/35‑1 (MQ=255)
                           aaCGGCAGTTTTTGGATGTATTCAGAACGATCCgg         <  1:19203076/35‑1 (MQ=255)
                            aCGGCAGTTTTTGGATGTATTCAGAACGATCCggg        <  1:18856880/35‑1 (MQ=255)
                            aCGGCAGTTTTTGGATGTATTCAGAACGATCCggg        <  1:7101879/35‑1 (MQ=255)
                            aCGGCAGTTTTTGGATGTATTCAGAACGATCCggg        <  1:5706880/35‑1 (MQ=255)
                             cGGCAGTTTTTGGATGTATTCAGAACGATCCGGGc       <  1:19572268/35‑1 (MQ=255)
                              ggCAGTTTTTGGATGTATTCAGAACGATCCGGGCt      <  1:13494147/35‑1 (MQ=255)
                              ggCAGTTTTTGGATGTATTCAGAACGATCCGGGCt      <  1:1462916/35‑1 (MQ=255)
                               gCAGTTTTTGGATGTATTCAGAACGATCCGGGCTc     >  1:10317723/1‑35 (MQ=255)
                               gCAGTTTTTGGATGTATTCAGAACGATCCGGGCTc     <  1:1351108/35‑1 (MQ=255)
                                cAGTTTTTGGATGTATTCAGAACGATCCGGGCTCa    >  1:14041652/1‑35 (MQ=255)
                                cAGTTTTTGGATGTATTCAGAACGATCCGGGCTCa    >  1:2878989/1‑35 (MQ=255)
                                 aGTTTTTGGATGTATTCAGAACGATCCGGGCTCAg   <  1:14244266/35‑1 (MQ=255)
                                 aGTTTTTGGATGTATTCAGAACGATCCGGGCTCAg   >  1:15008550/1‑35 (MQ=255)
                                 aGTTTTTGGATGTATTCAGAACGATCCGGGCTCAg   >  1:15678195/1‑35 (MQ=255)
                                  gTTTTTGGATGTATTCAGAACGATCCGGGCTCAgg  <  1:5117478/35‑1 (MQ=255)
                                  gTTTTTGGATGTATTCAGAACGATCCGGGCTCAgg  <  1:13574785/35‑1 (MQ=255)
                                  gTTTTTGGATGTATTCAGAACGATCCGGGCTCAgg  <  1:1766749/35‑1 (MQ=255)
                                  |                                   
CGCACGGCATGAACGTCATCTTTGCTGAACGGCAGTTTTTGGATGTATTCAGAACGATCCGGGCTCAGG  >  REL606/3947049‑3947117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.