New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2318764 =63 (0.610)11 (0.140) 4/36 NT 13.6% coding (1344/1653 nt) arnT 4‑amino‑4‑deoxy‑L‑arabinose transferase
?REL606 4219145 = 92 (1.190)intergenic (+483/‑112) yjbH/yjbA predicted porin/phosphate‑starvation‑inducible protein PsiE

Only 100 of 153 total aligned reads displayed.

TTTTTGTCGAGATGACACAAGAATCACTTCAGCCAAGCCGCTATATTCTTACTGATAGCGTCGGTGTTG  >  REL606/2318730‑2318798
                                  |                                  
tttttGTCGAGATGACACAAGAATCACTTCAGCCa                                    >  1:16209887/1‑35 (MQ=255)
tttttGTCGAGATGACACAAGAATCACTTCAGCCa                                    <  1:6786815/35‑1 (MQ=255)
ttgttcaacctggatttggagcgcgcctccaccaa                                    <  1:20340048‑M1/1‑1 (MQ=255)
 tgttcaacctggatttggagcgcgcctccaccaaa                                   >  1:18797539‑M1/34‑35 (MQ=255)
 tgttcaacctggatttggagcgcgcctccaccaaa                                   <  1:7367159‑M1/2‑1 (MQ=255)
 tgttcaacctggatttggagcgcgcctccaccaaa                                   <  1:9891494‑M1/2‑1 (MQ=255)
  tttGTCGAGATGACACAAGAATCCCTTCAGCCAAg                                  >  1:6530793/1‑35 (MQ=255)
  tttGTCGAGATGACACAAGAATCACTTCAGCCAAg                                  >  1:3469767/1‑35 (MQ=255)
  tttGTCGAGATGACACAAGAATCACTTCAGCCAAg                                  >  1:8219724/1‑35 (MQ=255)
  tttGTCGAGATGACACAAGAATCACTTCAGCCAAg                                  >  1:1831995/1‑35 (MQ=255)
  gttcaacctggatttggagcgcgcctccaccaAAg                                  <  1:15381503‑M1/3‑1 (MQ=255)
  gttcaacctggatttggagcgcgcctccaccaAAg                                  <  1:8679085‑M1/3‑1 (MQ=255)
  gttcaacctggatttggagcgcgcctccaccaAAg                                  >  1:3182935‑M1/33‑35 (MQ=255)
  gttcaacctggatttggagcgcgcctccaccaAAg                                  <  1:10494037‑M1/3‑1 (MQ=255)
   ttcaacctggatttggagcgcgcctccaccaAAGc                                 >  1:951614‑M1/32‑35 (MQ=255)
   ttcaacctggatttggagcgcgcctccaccaAAGc                                 >  1:12878662‑M1/32‑35 (MQ=255)
   ttcaacctggatttggagcgcgcctccaccaAAGc                                 >  1:19189763‑M1/32‑35 (MQ=255)
   ttGTGGAGATGACACAAGAATCACTTCAGCCAAGc                                 >  1:1788504/1‑35 (MQ=255)
   ttGTCGAGATGACACAAGAATCACTTCTGCCAAGc                                 >  1:18287581/1‑35 (MQ=255)
   ttGTCGAGATGACACAAGAATCACTTCAGCCAAGc                                 >  1:17705743/1‑35 (MQ=255)
   ttGTCGAGATGACACAAGAATCACTTCAGCCAAGc                                 <  1:6992137/35‑1 (MQ=255)
   ttGTCGAGATGACACAAGAATCACTTCAGCCAAGc                                 >  1:8287355/1‑35 (MQ=255)
   ttGTCGAGATGACACAAGAATCACTTCAGCCAAGc                                 >  1:2235815/1‑35 (MQ=255)
    tcaacctggatttggagcgcgcctccaccaAAGcc                                <  1:20158730‑M1/5‑1 (MQ=255)
    tcaacctggatttggagcgcgcctccaccaAAGcc                                <  1:8894876‑M1/5‑1 (MQ=255)
    tcaacctggatttggagcgcgcctccaccaAAGcc                                <  1:9581157‑M1/5‑1 (MQ=255)
    tcaacctggatttggagcgcgcctccaccaAAGcc                                <  1:9350687‑M1/5‑1 (MQ=255)
    tGTCGAGATGACACAAGAATCACTTCAGCCAAGcc                                >  1:13351766/1‑35 (MQ=255)
    tGTCGAGATGACACAAGAATCACTTCAGCCAAGcc                                >  1:7833422/1‑35 (MQ=255)
    tGTCGAGATGACACAAGAATCACTTCAGCCAAGcc                                >  1:16152762/1‑35 (MQ=255)
    tGTCGAGATGACACAAGAATCACTTCAGCCAAGcc                                >  1:16838384/1‑35 (MQ=255)
     gTCGAGATGACACAAGAATCACTTCAGCCAAGCCg                               >  1:18949621/1‑35 (MQ=255)
     gTCGAGATGACACAAGAATCACTTCAGCCAAGCCg                               >  1:14976586/1‑35 (MQ=255)
     gTCGAGATGACACAAGAATCACTTCAGCCAAGCCg                               >  1:12025459/1‑35 (MQ=255)
     gTCGAGATGACACAAGAATCACTTCAGCCAAGCCg                               >  1:5659668/1‑35 (MQ=255)
     gTCGAGATGACAAAAGAATCACTTCAGCCAAGCCg                               <  1:10953295/35‑1 (MQ=255)
     caacctggatttggagcgcgcctccaccaAAGCCg                               <  1:13522904‑M1/6‑1 (MQ=255)
      tCGAGATGACACAAGAATCACTTCAGCCAAGCCGc                              >  1:619536/1‑35 (MQ=255)
      tCGAGATGACACAACAATCACTTCAGCCAAGCCGc                              >  1:5797131/1‑35 (MQ=255)
       cGAGATGACACAAGAATCACTTCAGCCAAGCCGCt                             >  1:5485844/1‑35 (MQ=255)
       cGAGATGACACAAGAATCACTTCAGCCAAGCCGCt                             >  1:10871326/1‑35 (MQ=255)
        gagaTGACACAAGAATCACTTCAGCCAAGCCGCta                            >  1:20512301/1‑35 (MQ=255)
        gagaTGACACAAGAATCACTTCAGCCAAGCCGCta                            >  1:18462278/1‑35 (MQ=255)
        gagaTGACACAAGAATCACTTCAGCCAAGCCGCta                            >  1:11134947/1‑35 (MQ=255)
         agaTGACACAAGAATCACTTCAGCCAAGCCGCtat                           >  1:18050058/1‑35 (MQ=255)
         agaTGACACAAGAATCACTTCAGCCAAGCCGCtat                           >  1:14905038/1‑35 (MQ=255)
          gaTGACACAAGAATCACTTCAGCCAAGCCGCtata                          >  1:13758637/1‑35 (MQ=255)
          gaTGACACAAGAATCACTTCAGCCAAGCCGCtata                          >  1:13760029/1‑35 (MQ=255)
          gaTGACACAAGAATCACTTCAGCCAAGCCGCtata                          >  1:3949345/1‑35 (MQ=255)
           aTGACACAAGAATCACTTCAGCCAAGCCGCTatat                         >  1:12612778/1‑35 (MQ=255)
            tGACACAAGAATCACTTCAGCCAAGCCGCTATAtt                        >  1:12421135/1‑35 (MQ=255)
            tGACACAAGAATCACTTCAGCCAAGCCGCTATAtt                        >  1:3845766/1‑35 (MQ=255)
             gACACAAGAATCACTTCAGCCAAGCCGCTATATTc                       >  1:9590332/1‑35 (MQ=255)
              acacAAGAATCACTTCAGCCAAGCCGCTATATTCt                      >  1:3757505/1‑35 (MQ=255)
              acacAAGAATCACTTCAGCCAAGCCGCTATATTCt                      >  1:16565563/1‑35 (MQ=255)
              acacAAGAATCACTTCAGCCAAGCCGCTATATTCt                      >  1:13129144/1‑35 (MQ=255)
               cacaAGAATCACTTCAGCCAAGCCGCTATATTCtt                     >  1:3043611/1‑35 (MQ=255)
               cacaAGAATCACTTCAGCCAAGCCGCTATATTCtt                     >  1:14054413/1‑35 (MQ=255)
               cacaAGAATCACTTCAGCCAAGCCGCTATATTCtt                     >  1:19386825/1‑35 (MQ=255)
               cacaAGAATCACTTCAGCCAAGCCGCTATATTCtt                     >  1:13201963/1‑35 (MQ=255)
                acaAGAATCACTTCAGCCAAGCCGCTATATTCTTa                    >  1:4674499/1‑35 (MQ=255)
                acaAGAATCACTTCAGCCAAGCCGCTATATTCTTa                    >  1:18623895/1‑35 (MQ=255)
                  aaGAATCACTTCAGCCAAGCCGCTATATTCTTACt                  >  1:16134671/1‑35 (MQ=255)
                  aaGAATCACTTCAGCCAAGCCGCTATATTCTTACt                  >  1:47899/1‑35 (MQ=255)
                  aaGAATCACTTCAGCCAAGCCGCTATATTCTTACt                  >  1:8104511/1‑35 (MQ=255)
                  aaGAATCACTTCAGCCAAGCCGCTATATTCTTACt                  >  1:12040615/1‑35 (MQ=255)
                  aaGAATCACTTCAGCCAAGCCGCTATATTCTTACt                  >  1:10300157/1‑35 (MQ=255)
                    gAATCACTTCAGCCAAGCCGCTATATTCTTACTGa                >  1:3994097/1‑35 (MQ=255)
                     aaTCACTTCAGCCAAGCCGCTATATTCTTACTGAt               >  1:8677736/1‑35 (MQ=255)
                     aaTCACTTCAGCCAAGCCGCTATATTCTTACTGAt               >  1:11977255/1‑35 (MQ=255)
                      acccctccaccaAAGCCGCTATATTCTTACTGATa              >  1:12463862‑M1/13‑35 (MQ=255)
                      acccctccaccaAAGCCGCTATATTCTTACTGATa              >  1:4245181‑M1/13‑35 (MQ=255)
                      aTCCCTCCAGCAAAGCCGCTATATTCTTACTGATa              <  1:14540505/35‑1 (MQ=25)
                      aTCACTTCAGCCAAGCCGCTATATTCTTACTGATa              >  1:18872252/1‑35 (MQ=255)
                       tCACTTCAGCCAAGCCGCTATATTCTTACTGATAg             >  1:9287302/1‑35 (MQ=255)
                       tCACTTCAGCCAAGCCGCTATATTCTTACTGATAg             >  1:20529923/1‑35 (MQ=255)
                         cctccaccaAAGCCGCTATATTCTTACTGATAGCg           >  1:4439199‑M1/10‑35 (MQ=255)
                          ctcaaccaAAGCCGCTATATTCTTACTGATAGCGt          >  1:15591315‑M1/9‑35 (MQ=255)
                           tccagcaAAGCCGCTATATTCTTACTGATAGCGTc         >  1:10624947‑M1/8‑35 (MQ=255)
                           tccaccaAAGCCGCTATATTCTTACTGATAGCGTc         >  1:4154382‑M1/8‑35 (MQ=255)
                           tccaccaAAGCCGCTATATTCTTACTGATAGCGTc         >  1:7292516‑M1/8‑35 (MQ=255)
                            tCAGCCAAGCCGCTATATTCTTACTGATAGCGTCg        >  1:7673864/1‑35 (MQ=255)
                            ccaccaAACCCGCTATATTCTTACTGATAGCGTCg        >  1:19546542‑M1/7‑35 (MQ=255)
                             cgccaAAGCCGCTATATTCTTACTGATAGCGTCgg       >  1:16386803‑M1/6‑35 (MQ=255)
                             caccaAAGCCGCTATATTCTTACTGATAGCGTCgg       >  1:13205036‑M1/6‑35 (MQ=255)
                             cAGCCAAGCCGCTATATTCTTACTGATAGCGTCgg       >  1:11165982/1‑35 (MQ=255)
                             cAGCAAGGCCGCTATATTCTTACTGATAGCGTCgg       <  1:10748903/35‑1 (MQ=38)
                              aGCCAAGCCGCTATATTCTTACTGATAGCGTCggg      >  1:9487695/1‑34 (MQ=255)
                              aGCCAAGCCGCTATATTCTTACTGATAGCGTCggg      >  1:8788848/1‑34 (MQ=255)
                               gcaAAGCCGCTATATTCTTACTGATAGCGTCGgtg     >  1:17069270‑M1/4‑35 (MQ=255)
                               gCCAAGCCGCTATATTCTTACTGATAGCGTCgggg     >  1:16960341/1‑33 (MQ=255)
                               gCCAAGCCGCTATATTCTTACTGATAGCGTCgggg     >  1:17270397/1‑33 (MQ=255)
                                ccAAGCCGCTATATTCTTACTGATAGCGTCggggg    >  1:2916070/1‑32 (MQ=255)
                                caAAGCCGCTATATTCTTACTGATAGCGTCGgtgt    >  1:12079732‑M1/3‑35 (MQ=255)
                                caAAGCCGCTATATTCTTACTGATAGCGTCGgtgt    >  1:6011958‑M1/3‑35 (MQ=255)
                                aaAAGCCGCTATATTCTTACTGATAGCGTCGctgt    >  1:17412991‑M1/3‑35 (MQ=255)
                                 aAAGCCGCTATATTCTTACTGATAGCGTCGGTGtt   >  1:5433924‑M1/2‑35 (MQ=255)
                                  AAGCCGCTATATTCTTACTGATAGCGTCGGTGTTg  >  1:19708730‑M1/1‑35 (MQ=255)
                                  AAGCCGCTATATTCTTACTGATAGCGTCGGTGTTg  >  1:2408775‑M1/1‑35 (MQ=255)
                                  AAGCCGCTATATTCTTACTGATAGCGTCGGTGTTg  >  1:5983052‑M1/1‑35 (MQ=255)
                                  |                                  
TTTTTGTCGAGATGACACAAGAATCACTTCAGCCAAGCCGCTATATTCTTACTGATAGCGTCGGTGTTG  >  REL606/2318730‑2318798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.