New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1924695 =91 (0.890)6 (0.100) 3/28 NT 9.9% coding (52/612 nt) ruvA Holliday junction DNA helicase motor protein
?REL606 = 2696376 56 (0.930)coding (277/2145 nt) nrdE ribonucleotide‑diphosphate reductase alpha subunit

Only 100 of 187 total aligned reads displayed.

AGCACTTCATAGCCTACGCCGCCCACTTCAATTAACACCAGCGGGGGTTGTTTTTCAATGATGATGCCT  >  REL606/1924661‑1924729
                                  |                                  
cgcgactttgtcattacgctgtttgcccacgcaca                                    >  1:13832680‑M1/35‑35 (MQ=255)
cgcgactttgtcattacgctgtttgcccacgcaca                                    <  1:2446258‑M1/1‑1 (MQ=255)
cgcgactttgtcattacgctgtttgcccacgcaca                                    >  1:15174883‑M1/35‑35 (MQ=255)
cgcgactttgtcattacgctgtttgcccacgcaca                                    <  1:5699525‑M1/1‑1 (MQ=255)
cgcgactttgtcattacgctgtttgcccacgcaca                                    <  1:1860485‑M1/1‑1 (MQ=255)
cgcgactttgtcattacgctgtttgcccacgcaca                                    >  1:8077655‑M1/35‑35 (MQ=255)
cgcgactttgtcattacgctgtttgcccacgcaca                                    <  1:16854158‑M1/1‑1 (MQ=255)
 gCACTTCATAGCCTACGCCGCCCACTTCAATTAac                                   >  1:1176426/1‑35 (MQ=255)
  cgactttgtcattacgctgtttgcccacgcacaca                                  <  1:3249631‑M1/3‑1 (MQ=255)
  cgactttgtcattacgctgtttgcccacgcacaca                                  <  1:17337937‑M1/3‑1 (MQ=255)
  cACTTCATAGCCTACGCCGCCCACTTCAATTAaca                                  >  1:9263823/1‑35 (MQ=255)
   gactttgtcattacgctgtttgcccacgcacacac                                 >  1:14920818‑M1/32‑35 (MQ=255)
   gactttgtcattacgctgtttgcccacgcacacac                                 <  1:11109301‑M1/4‑1 (MQ=255)
   gactttgtcattacgctgtctgcccacgcacacac                                 <  1:4370727‑M1/4‑1 (MQ=255)
    cTTCATAGCCTACGCCGCCCACTTCAATTAACAcc                                >  1:18603063/1‑35 (MQ=255)
    cTTCATAGCCTACGCCGCCCACTTCAATTAACAcc                                >  1:15085143/1‑35 (MQ=255)
    cTTCATAGCCTACGCCGCCCACTTCAATTAACAcc                                >  1:13521566/1‑35 (MQ=255)
    actttgtcattacgctgtttgcccacgcacACAcc                                <  1:15433696‑M1/5‑1 (MQ=255)
     ttCATAGCCTACGCCGCCCACTTCAATTAACACCa                               <  1:19265500/35‑1 (MQ=255)
     ttCATAGCCTACGCCGCCCACTTCAATTAACACCa                               <  1:4877079/35‑1 (MQ=255)
     ttCATAGCCTACGCCGCCCACTTCAATTAACACCa                               >  1:1003709/1‑35 (MQ=255)
     ctttgtcattacgctgtttgcccacgcacACACCa                               <  1:10130338‑M1/6‑1 (MQ=255)
     ctttgtcattacgctgtttgcccacgcacACACCa                               >  1:274186‑M1/30‑35 (MQ=255)
     ctttgtcattacgctgtttgcccacgcacACACCa                               >  1:10638718‑M1/30‑35 (MQ=255)
     ctttgtcattacgctgtttgcccacgcacACACCa                               >  1:7980505‑M1/30‑35 (MQ=255)
     ctttgtcattacgctgtttgcccacgcacACACCa                               <  1:16131602‑M1/6‑1 (MQ=255)
      tttgtcattacgctgtttgcccacgcacACACCAg                              <  1:1469523‑M1/7‑1 (MQ=255)
      tttgtcattacgctgtttgcccacgcacACACCAg                              >  1:6379777‑M1/29‑35 (MQ=255)
      tttgtcattacgctgtttgcccacgcacACACCAg                              >  1:17815271‑M1/29‑35 (MQ=255)
      tCATAGCCTACGCCGCCCACTTCAATTAACACCAg                              <  1:18027820/35‑1 (MQ=255)
      tCATAGCCTACGCCGCACACTTCAATTAACACCAg                              <  1:8868008/35‑1 (MQ=255)
      caaTAGCCTACGCCGCCCACTTCAATTAACACCAg                              <  1:1241397/33‑1 (MQ=255)
       ttgtcattacgctgtttgcccacgcacACACCAGc                             >  1:16942207‑M1/28‑35 (MQ=255)
       ttgtcattacgctgtttgcccacgcacACACCAGc                             >  1:17616631‑M1/28‑35 (MQ=255)
       ttgtcattacgctgtttgcccacgcacACACCAGc                             >  1:6643591‑M1/28‑35 (MQ=255)
       ttgtcattacgctgtttgcccacgcacACACCAGc                             <  1:19133161‑M1/8‑1 (MQ=255)
       taTAGCCTCCGCCGCCCACTTCAATTAACACCAGc                             <  1:11569231/34‑1 (MQ=255)
       cATAGCCTACGCCGCCCACTTCAATTAACACCAGc                             <  1:4990345/35‑1 (MQ=255)
        ttAGCCTACGCCGCCCACTTCAATTAACACCAGCg                            <  1:12326236/34‑1 (MQ=255)
        tgtcattacgctgtttgcccacgcacACACCAGCg                            >  1:5874711‑M1/27‑35 (MQ=255)
        tgtcattacgctgtttgcccacgcacACACCAGCg                            <  1:2806690‑M1/9‑1 (MQ=255)
        tgtcattacgctgtttgcccacgcacACACCAGCg                            >  1:13637039‑M1/27‑35 (MQ=255)
        tgtcattacgctgtttgcccacgcacACACCAGCg                            >  1:13098984‑M1/27‑35 (MQ=255)
        aTAGCCTACGCCGCCCACTTCAATTAACACCAGCg                            >  1:11283626/1‑35 (MQ=255)
        aTAGCCTACGCCGCCCACTTCAATTAACACCAGCg                            >  1:1433396/1‑35 (MQ=255)
        aTAGCCTACGCCGCCCACTTCAATTAACACCAGCg                            <  1:7011691/35‑1 (MQ=255)
        aTAGCCTACGCCGCCCACTTCAATTAACACCAGCg                            >  1:19683018/1‑35 (MQ=255)
         tAGCCTACGCCGCCCACTTCAATTAACACCAGCgg                           <  1:1201246/35‑1 (MQ=255)
         gtcattacgctgtttgcccacgcacACACCAGCgg                           <  1:20373087‑M1/10‑1 (MQ=255)
          tcattacgctgtttgcccacgcacACACCAGCggg                          <  1:33062‑M1/11‑1 (MQ=255)
          tcattacgctgtttgcccacgcacACACCAGCggg                          <  1:16769424‑M1/11‑1 (MQ=255)
          tcattacgctgtttgcccacgcacACACCAGCggg                          <  1:1451961‑M1/11‑1 (MQ=255)
          tcattacgctgtttgcccacgcacACACCAGCggg                          <  1:18977593‑M1/11‑1 (MQ=255)
          aGCCTACGCCGCCCACTTCAATTAACACCAGCggg                          >  1:4473241/1‑35 (MQ=255)
          aGCCTACGCCGCCCACTTCAATTAACACCAGCggg                          <  1:3526556/35‑1 (MQ=255)
          aGCCTACGCCGCCCACTTCAATTAACACCAGCggg                          >  1:3814224/1‑35 (MQ=255)
           gCCTACGCCGCCCACTTCAATTAACACCAGCgggg                         >  1:20054240/1‑35 (MQ=255)
           gCCTACGCCGCCCACTTCAATTAACACCAGCgggg                         <  1:19399277/35‑1 (MQ=255)
           gCCTACGCCGCCCACTTCAATTAACACCAGCgggg                         >  1:18465828/1‑35 (MQ=255)
           cattacgctgtttgcccacgcacACACCAGCgggg                         <  1:9531926‑M1/12‑1 (MQ=255)
            attacgctgtttgcccacgcacACACCAGcggggt                        <  1:2368409‑M1/13‑2 (MQ=255)
             cTACGCCGCCCACTTCAATTAACACCAGCgggggg                       >  1:10403349/1‑34 (MQ=255)
             cTACGCCGCCCACTTCAATTAACACCAGCgggggg                       >  1:10048552/1‑34 (MQ=255)
              tacgctgtttgcccacgcacACACCagcggggttt                      <  1:17264953‑M1/15‑4 (MQ=255)
              tACGCCGCGCACTTCAATTAACACCAGCGGGGgtt                      <  1:18284987/35‑1 (MQ=255)
              tACGCCGCCCACTTCAATTAACACCAGCggggggt                      >  1:20602316/1‑33 (MQ=255)
               acgctgtttgcccacgcacACACCAGCGGGGtttg                     <  1:13173028‑M1/16‑1 (MQ=255)
               aCGCCGCCCACTTCAATTAACACCAGCGGGGgttg                     <  1:4875176/35‑1 (MQ=255)
               aCGCCGCCCACTTCAATTAACACCAGCGGGGgttg                     <  1:1654347/35‑1 (MQ=255)
                cgctgtttgcccacgcacACACCAGCGGGGtttgt                    <  1:4820744‑M1/17‑1 (MQ=255)
                cgctgtttgcccacgcacACACCAGCGGGGtttgt                    <  1:12161356‑M1/17‑1 (MQ=255)
                cgccgcCCACTTCAATTAACACCAGCGGGGgttgt                    >  1:5402697/1‑35 (MQ=255)
                cgccgcCCACTTCAATTAACACCAGCGGGGgttgt                    <  1:3508490/35‑1 (MQ=255)
                cgccgcCCACTTCAATTAACACCAGCGGGGgttgt                    <  1:18944208/35‑1 (MQ=255)
                cgccgcCCACTTCAATTAACACCAGCGGGGgttgt                    >  1:14971157/1‑35 (MQ=255)
                 gctgtttgcccacgcacACACCAGCGGGGtttgtt                   <  1:18042462‑M1/18‑1 (MQ=255)
                  ccgccCACTTCAATTAACACCAGCGGGGGTTGttt                  >  1:9403289/1‑35 (MQ=255)
                  ccgccCACTTCAATTAACACCAGCGGGGGTTGttt                  <  1:2516487/35‑1 (MQ=255)
                  ccgccCACTTCAATTAACACCAGCGGGGGTTGttt                  <  1:8377950/35‑1 (MQ=255)
                  ccgccCACTTCAATTAACACCAGCGGGGGGTGttt                  >  1:13285627/1‑35 (MQ=255)
                   cgccCACTTCAATTAACACCAGCGGGGGTTGtttt                 <  1:743399/35‑1 (MQ=255)
                    gccCACTTCAATTAACACCAGCGGGGGTTGttttt                <  1:12291223/35‑1 (MQ=255)
                       cACTTCAATTAACACCAGCGGGGGTTGTTTTTCaa             >  1:12679963/1‑35 (MQ=255)
                       cACTTCAATTAACACCAGCGGGGGTTGTTTTTCaa             <  1:128591/35‑1 (MQ=255)
                       cACTTCAATTAACACCAGCGGGGGTTGTTTTTCaa             <  1:892384/35‑1 (MQ=255)
                        aCTTCAATTAACACCAGCGGGGGTTGTTTTTCAat            <  1:18662889/35‑1 (MQ=255)
                         cTTCAATTAACACCAGCGGGGGTTGTTTTTCAatg           >  1:5220062/1‑35 (MQ=255)
                          ttCAATTAACACCAGCGGGGGTTGTTTTTCAatga          <  1:19863925/35‑1 (MQ=255)
                           tCAATTAACACCAGCGGGGGTTGTTTTTCAatgat         <  1:11227125/35‑1 (MQ=255)
                            cAATTAACACCAGCGGGGGTTGTTTTTCAatgatg        <  1:836485/35‑1 (MQ=255)
                              aTTAACACCAGCGGGGGTTGTTTTTCAatgatgat      <  1:9643802/35‑1 (MQ=255)
                              aTTAACACCAGCGGGGGTTGTTTTTCAatgatgat      <  1:18890571/35‑1 (MQ=255)
                              aTTAACACCAGCGGGGGTTGTTTTTCAatgatgat      <  1:4173591/35‑1 (MQ=255)
                              aTTAACAACAGCGGGGGTTGTTTTTCAatgatgat      <  1:11480599/35‑1 (MQ=255)
                               ttAACACCAGCGGGGGTTGTTTTTTAatgatgatg     >  1:597336/1‑35 (MQ=255)
                               ttAACACCAGCGGGGGTTGTTTTTCAatgatgatg     <  1:8400021/35‑1 (MQ=255)
                               ttAACACCAGCGGGGGTTGTTTTTCAatgatgatg     >  1:3186691/1‑35 (MQ=255)
                               ttAACACCAGCGGGGGTTGTTTTTCAatgatgatg     >  1:337609/1‑35 (MQ=255)
                               ttAACACCAGCGGGGGTTGTTTTTCAatgatgatg     <  1:10200264/35‑1 (MQ=255)
                                  ACACCAGCGGGGGTTGTTTTTCAATGATGATGCct  >  1:6152487‑M1/1‑35 (MQ=255)
                                  |                                  
AGCACTTCATAGCCTACGCCGCCCACTTCAATTAACACCAGCGGGGGTTGTTTTTCAATGATGATGCCT  >  REL606/1924661‑1924729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.