New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 304063997 (0.940)17 (0.220) 5/36 NT 21.2% coding (648/810 nt) pppA bifunctional prepilin leader peptidase/ methylase
?REL606 3224905 = 54 (0.700)coding (858/2517 nt) yraJ predicted outer membrane protein

TAAAGCAACGTTGGGCAGTGATAACGCCCCCACCCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3040600‑3040639
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA  >  REL606/3224905‑3224938
                                                                          
TAAAGCAACGTTGGGCAGTGATAACGCCCCCACCC                                         >  1:3109155/1‑35
 AAAGCAACGTTGGGCAGTTATAACGCCCCCACCCA                                        >  1:9521007/1‑35
 AAAGCAACGTTGGGCAGTGATAACGCCCCCACCCA                                        <  1:5715752/35‑1
 AAAGCAACGTTGGGCAGTGATAACGCCCCCACCCA                                        >  1:13757249/1‑35
  AAGCAACGTTGGGCAGTGATAACGCCCCCACCCAG                                       >  1:6497818/1‑35
  AAGCAACGTTGGGCAGTGATAACGCCCCCACCCAG                                       <  1:17517174/35‑1
   AGCAACGTTGGGCAGTGATAACGCCCCCACCCAGC                                      >  1:10187558/1‑35
   AGCAACGTTGGGCAGTGATAACGCCCCCACCCAGC                                      <  1:8659895/35‑1
   AGCAACGTGGGGCAGTGATAACGCCCCCACCCAGC                                      <  1:14588107/35‑1
    GCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC                                     <  1:3066035/35‑1
    GCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC                                     >  1:16538447/1‑35
    GCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC                                     <  1:15549434/35‑1
    GCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC                                     >  1:9701342/1‑35
     CAACGTTGGGCAGTGATAACGCCCCCCCCCAGCCA                                    <  1:8314193/35‑1
     CAACGTTGGGCAGTGATAACGCCCCCACCCAGCCA                                    >  1:37542/1‑35
                       accCCCCCACCCAGCCAGCGCGGATTTGCCCCAAC                  <  1:14210319/32‑1
                       ACGCCCCCAACCAGCCAGCGCGGATTTGCCCCAAC                  <  1:13334631/35‑1
                        ccCCCCCACCCAGCCAGCGCGGATTTGCCCCAACG                 <  1:19648944/33‑1
                         gcaCCCACCCAGCCAGCGCGGATTTGCCCCAACGG                <  1:12857338/32‑1
                         cCCCCCACCCAGCCAGCGCGGATTTGCCCCAACGG                <  1:9301780/34‑1
                         cCCCCCACCCAGCCAGCGCGGATTTGCCCCAACGG                <  1:3703897/34‑1
                         cCCCCCACCCAGCCAGCGCGGATTTGCCCCAACGG                <  1:17683028/34‑1
                         GCCCCCACCCAGCCAGCGCGGATTTGCCCCAACGG                <  1:10627634/35‑1
                         GCCCCCACCCAGCCAGCGCGGATTTGCCCCAACGG                <  1:5717603/35‑1
                         GCCCCCACCCAGCCAGCGCGGATTTGCCCCAACGG                <  1:17460161/35‑1
                          CCCCCACCCAGCCAGCGCGGATTTGCCCCAACGGT               <  1:19894792/35‑1
                          CCCCCACCCAGCCAGCGCGGATTTGCCCCAACGGT               <  1:1692492/35‑1
                           CCCCCCCCAGCCAGCGCGGATTTGCCCCAACGGTA              <  1:4383169/35‑1
                           CCCCACCCAGCCAGCGCGGATTTGCCCCAACGGTA              <  1:5633891/35‑1
                           CCCCACCCAGCCAGCGCGGATTTGCCCCAACGGTA              <  1:17235531/35‑1
                            CCCACCCAGCCAGCGCGGATTTGCCCCAACGGTAC             <  1:4475286/35‑1
                            CCCACCCAGCCAGCGCGGATTTGCCCCAACGGTAC             <  1:2481547/35‑1
                             cccCCCAGCCAGCGCGGATTTGCCCCAACGGTACG            <  1:579143/32‑1
                             caACCCAGCCAGCGCGGATTTGCCCCAACGGTACa            <  1:550927/33‑2
                               ACCCAGCCAGCGCGGATTTGCCCCAACGGTACGCG          <  1:19264190/35‑1
                               ACCCAGCCAGCGCGGATTTGCCCCAACGGTACGCG          <  1:5540549/35‑1
                                aCCAGCCAGCGGGGATTTGCCCCAACGGTACGCGG         <  1:7532043/34‑1
                                aCCAGCCAGCGCGGATTTGCCCCAACGGTACGCGG         <  1:3805004/34‑1
                                CCCAGCCAGCGCGGATTTGCCCCAACGGTACGCGG         <  1:17943456/35‑1
                                CCCAGCCAGCGCGGATTTGCCCCAACGGTACGCGG         <  1:17896658/35‑1
                                CCCAGCCAGCGCGGATTTGCCCCAACGGTACGCGG         <  1:7806011/35‑1
                                CCCAGCCAGCGCGGATTTGCCCCAACGGTACGCGG         <  1:3207811/35‑1
                                CCCAGCCAGCGCGGATTTGCCCCAACGGTACGCGG         <  1:16312711/35‑1
                                 CCAGCCAGCGCGGATTTGCCCCAACGGTACGCGGT        <  1:19870804/35‑1
                                 CCAGCCAGCGCGGATTTGCCCCAACGGTACGCGGT        <  1:1487574/35‑1
                                  CAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTA       <  1:6066684/35‑1
                                  CAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTA       >  1:8056085/1‑35
                                  CAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTA       <  1:8097431/35‑1
                                   AGCCAGCGCGGATTTGCCCCAACGGTACGCGGTAT      >  1:5659997/1‑35
                                   AGCCAGCGCGGATTTGCCCCAACGGTACGCGGTAT      >  1:18638649/1‑35
                                   AGCCAGCGCGGATTTGCCCCAACGGTACGCGGTAT      >  1:18040797/1‑35
                                   AGCCAGCGCGGATTTGCCCCAACGGTACGCGGTAT      >  1:12301898/1‑35
                                   AGCCAGCGCGGATTTGCCCCAACGGTACGCGGTAT      >  1:9402942/1‑35
                                    GCCAGCGCGGATTTGCCCCAACGGTACGCGGTATa     >  1:10946309/1‑34
                                    GCCAGCGCGGATTTGCCCCAACGGTACGCGGTATC     >  1:5386961/1‑35
                                    GCCAGCGCGGATTTGCCCCAACGGTACGCGGTATC     <  1:11902399/35‑1
                                    GCCAGCGCGGATTTGCCCCAACGGTACGCGGTATC     <  1:16169703/35‑1
                                    GCCAGCGCGGATTTGCCCCAACGGTACGCGGTATC     <  1:15449437/35‑1
                                     CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG    <  1:8208414/35‑1
                                     CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG    >  1:4965622/1‑35
                                     CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG    <  1:3055189/35‑1
                                     CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG    <  1:2370892/35‑1
                                     CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG    <  1:13344123/35‑1
                                     CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG    <  1:11657809/35‑1
                                     CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG    <  1:10100476/35‑1
                                      CAGCGCGTATTTGCCCCAACGGTACGCGGTATCGC   >  1:465975/1‑35
                                      CAGCGCGGATTTGCCCCAACGGTACGCGGTATCGC   >  1:6660442/1‑35
                                      CAGCGCGGATTTGCCCCAACGGTACGCGGTATCGC   <  1:17684607/35‑1
                                      CAGCGCGGATTTGCCCCAACGGTACGCGGTATCGC   >  1:864839/1‑35
                                      CAGCGCGGATTTGCCCCAACGGTACGCGGTATCGC   >  1:12814112/1‑35
                                       AGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA  >  1:6168022/1‑35
                                       AGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA  >  1:8080059/1‑35
                                       AGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA  >  1:17669725/1‑35
                                       AGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA  <  1:8806902/35‑1
                                       AGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA  >  1:9875042/1‑35
                                                                          
TAAAGCAACGTTGGGCAGTGATAACGCCCCCACCCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3040600‑3040639
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA  >  REL606/3224905‑3224938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.