Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 4,613,019 +TT :: IS150 (+) 100% intergenic (‑16/‑91) smp ← / → serB hypothetical protein/3‑phosphoserine phosphatase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664686 =NA (NA)139 (1.350) 45/48 NT 100% intergenic (‑77/‑49) gltL/insJ‑2 ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein
?REL606 = 4613019 0 (0.000)intergenic (‑16/‑90) smp/serB hypothetical protein/3‑phosphoserine phosphatase
* ? REL606 = 3894996NA (NA)114 (1.160) 38/46 NT 100% noncoding (1443/1443 nt) IS150 repeat region
?REL606 4613020 = 0 (0.000)intergenic (‑17/‑89) smp/serB hypothetical protein/3‑phosphoserine phosphatase

Only 100 of 341 total aligned reads displayed.

GGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAT  >  REL606/664652‑664719
                                  |                                 
cagttttgtgcgagccatcttccaccctttgaaat                                   >  1:17530221‑M1/35‑35 (MQ=255)
 gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                  <  1:9764151‑M1/35‑1 (MQ=255)
 gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                  >  1:13208324‑M1/1‑35 (MQ=255)
 gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                  >  1:6377989‑M1/1‑35 (MQ=255)
 agttttgtgcgagccatcttccaccctttgaaatt                                  >  1:19283449‑M1/34‑35 (MQ=255)
  gttttgtgcgagccatcttccaccctttgaaattt                                 <  1:8259346‑M1/3‑1 (MQ=255)
  gttttgtgcgagccatcttccaccctttgaaattt                                 >  1:18050576‑M1/33‑35 (MQ=255)
  cGTGAGCAGAAAGCCCGACACGCTCCAGCAGtttt                                 >  1:16534875/1‑35 (MQ=255)
   gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTg                                >  1:7068282/1‑35 (MQ=255)
    tGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcag                               <  1:14445182‑M1/35‑4 (MQ=255)
     gAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagg                              >  1:13700005‑M1/1‑31 (MQ=255)
     gAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagg                              >  1:7643158‑M1/1‑31 (MQ=255)
     gAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTa                              >  1:17817070/1‑35 (MQ=255)
      aGCAGAAAGCCCGACACGCTCCAGCAGTTTcaggg                             >  1:11672344‑M1/1‑30 (MQ=255)
      aGCAGAAAGCCCGACACGCTCCAGCAGTTTcaggg                             <  1:11056321‑M1/35‑6 (MQ=255)
      aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAc                             >  1:15282923/1‑35 (MQ=255)
      aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAc                             >  1:4372639/1‑35 (MQ=255)
       gtgcgagccatcttccaccctttgaaaTTTGTACt                            >  1:14962005‑M1/28‑35 (MQ=255)
       gtgcgagccatcttccaccctttgaaaTTTGTACt                            >  1:10892625‑M1/28‑35 (MQ=255)
       gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAca                            >  1:11409604/1‑34 (MQ=255)
       gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACt                            <  1:11155362/35‑1 (MQ=255)
       gCAGAAAGCCCGACACGCTCCAGCAGTTTGTACTg                           >  1:7706441/1‑35 (MQ=38)
       gCAGAAAGCCCGACACGCTCCAGCAGTTTGTACTg                           >  1:4331342/1‑35 (MQ=38)
        tgcgagccatcttccaccctttgaaaTTTGTACTg                           >  1:3780583‑M1/27‑35 (MQ=255)
        cAGAAAGCCCGACACGCTCCAGCAGTTTcagggct                           >  1:2307506‑M1/1‑28 (MQ=255)
        cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg                           <  1:20293126/35‑1 (MQ=255)
        cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg                           <  1:18517248/35‑1 (MQ=255)
        cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg                           <  1:8718421/35‑1 (MQ=255)
         gcgagccatcttccaccctttgaaaTTTGTACTGc                          >  1:15954720‑M1/26‑35 (MQ=255)
         gcgagcaatcttccaccctttgaaaTTTGTACTGc                          >  1:2571125‑M1/26‑35 (MQ=255)
          gAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCa                         <  1:4186448/35‑1 (MQ=255)
          cgagccatcttccaccctttgaaaTTTGTACTGCa                         >  1:15672076‑M1/25‑35 (MQ=255)
           gagccatcttccaccctttgaaaTTTGTACTGCAc                        <  1:14605840‑M1/12‑1 (MQ=255)
           gagccatcttccaccctttgaaaTTTGTACTGCAc                        >  1:4773024‑M1/24‑35 (MQ=255)
           gagccatcttccaccctttgaaaTTTGTACTGCAc                        <  1:5767806‑M1/12‑1 (MQ=255)
           aaaGCCCGACACGCTCCAGCAGTTTcagggctttt                        >  1:3194309‑M1/1‑25 (MQ=255)
           aaaGCCCGACACGCTCCAGCAGTTTcagggctttt                        <  1:1033279‑M1/35‑11 (MQ=255)
           aaaGCCCGACACGCTCCAGCAGTTTTGTACTGCAc                        >  1:2712070/1‑35 (MQ=255)
            aaGCCCGACACGCTCCAGCAGTTTTGTACTGCAcc                       <  1:892413/35‑1 (MQ=255)
            aaGCCCGACACGCTCCAGCAGTTTTGTACTGCAcc                       >  1:4087517/1‑35 (MQ=255)
             gccatcttccaccctttgaaaTTTGTACTGCacca                      <  1:18693938‑M1/14‑2 (MQ=255)
             gccatcttccaccctttgaaaTTTGTACTGCAccc                      <  1:19157408‑M1/14‑1 (MQ=255)
             aGCCCGACACGCTCCAGCAGTTTcagggctttttc                      <  1:14146082‑M1/35‑13 (MQ=255)
              gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa                     <  1:19682940/35‑1 (MQ=255)
              ccatcttccaccctttgaagTTTGTACTGCACCCa                     >  1:12929704‑M1/21‑35 (MQ=255)
              ccatcttccaccctttgaaaTTTGTACTGCACCCa                     <  1:2962519‑M1/15‑1 (MQ=255)
              ccatcttccaccctttgaaaTTTGTACTGCACCCa                     >  1:14253009‑M1/21‑35 (MQ=255)
              ccatcttccaccctttgaaaTTTGTACTGCACCCa                     <  1:6591613‑M1/15‑1 (MQ=255)
               catcttccaccctttgaaaTTTGTACTGCACCCAt                    >  1:4054069‑M1/20‑35 (MQ=255)
               catcttccaccctttgaaaTTTGTACTGCACCCAt                    <  1:14653044‑M1/16‑1 (MQ=255)
               catcttccaccctttgaaaTTTGTACTGCACCCAt                    >  1:528645‑M1/20‑35 (MQ=255)
                ccGACACGCTCCAGAAGTTTcagggctttttcacg                   <  1:6107851‑M1/35‑16 (MQ=255)
                atcttccaccctttgaaaTTTGTACTGCACCCAtt                   <  1:10006959‑M1/17‑1 (MQ=255)
                atcttccaccctttgaaaTTTGTACTGCACCCAtt                   >  1:13060475‑M1/19‑35 (MQ=255)
                 tcttccaccctttgaaaTTTGTACTGCACCTAttt                  <  1:5584802‑M1/18‑1 (MQ=255)
                 tcttccaccctttgaaaTTTGTACTGCACCCAttt                  >  1:4971545‑M1/18‑35 (MQ=255)
                 tcttccaccctttgaaaTTTGTACTGCACCCAttt                  <  1:18225289‑M1/18‑1 (MQ=255)
                 cGACACGCTCCAGCAGTTTcagggctttttcacga                  >  1:10531586‑M1/1‑19 (MQ=255)
                  gACACGCTCCAGCAGTTTcagggctttttcacgag                 <  1:6878917‑M1/35‑18 (MQ=255)
                   ttccaccctttgaaaTTTGTACTGCACCCATTttg                <  1:1547994‑M1/20‑1 (MQ=255)
                   ttccaccctttgaaaTTTGTACTGCACCCATTttg                <  1:1790061‑M1/20‑1 (MQ=255)
                   ttccaccctttgaaaTTTGTACTGCACCCATTttg                >  1:17684854‑M1/16‑35 (MQ=255)
                   ttccaccctttgaaaTTTGTACTGCACCCATTttg                >  1:6066973‑M1/16‑35 (MQ=255)
                   ttccaccctttgaaaTTTGTACTGCACCCATTttg                <  1:20095759‑M1/20‑1 (MQ=255)
                    tccaccctttgaaaTTTGTACTGCACCCATTttgt               >  1:3422454‑M1/15‑35 (MQ=255)
                    cacGCTCCAGCAGTTTcagggctttttcacgagcc               >  1:17114661‑M1/1‑16 (MQ=255)
                    cacGCTCCAGCAGTTTTGTACTGCACCCATTttgt               >  1:2153816/1‑35 (MQ=255)
                     acGCTCCAGCAGTTTTGTACTGCACCCATTttgtt              <  1:125209/35‑1 (MQ=255)
                      caccctttgaaaTTTGTACTGCACCCATTttgttg             <  1:7788120‑M1/23‑1 (MQ=255)
                      caccctttgaaaTTTGTACTGCACCCATTttgttg             >  1:16710471‑M1/13‑35 (MQ=255)
                      caccctttgaaaTTTGTACTGCACCCATTttgttg             >  1:18066957‑M1/13‑35 (MQ=255)
                      caccctttgaaaTTTGTACTGCACCCATTttgttg             <  1:15025159‑M1/23‑1 (MQ=255)
                       accctttgaaaTTTGTACTGCACCCATTTTGTTgg            >  1:7998966‑M1/12‑35 (MQ=255)
                       accctttgaaaTTTGTACTGCACCCATTTTGTTgg            >  1:19513930‑M1/12‑35 (MQ=255)
                        ccctttgaaaTTTGTACTGCACCCATTTTGTTGGa           >  1:14021984‑M1/11‑35 (MQ=255)
                          ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg         >  1:8536111‑M1/9‑35 (MQ=255)
                          ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg         <  1:17383977‑M1/27‑1 (MQ=255)
                          ctttgaaaTTTGTACTGAACCCATTTTGTTGGACg         >  1:3527261‑M1/9‑35 (MQ=255)
                          ccAGCAGTTTTGTACTGCACCCATTTTGTTGGatg         >  1:3881426/1‑33 (MQ=255)
                           tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa        <  1:17954536‑M1/28‑1 (MQ=255)
                           tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa        <  1:7375556‑M1/28‑1 (MQ=255)
                           tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa        <  1:13444080‑M1/28‑1 (MQ=255)
                           tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa        <  1:4486104‑M1/28‑1 (MQ=255)
                           tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa        <  1:14303696‑M1/28‑1 (MQ=255)
                           cagcagTTTcagggctttttcacgagcccgcgctt        >  1:16246715‑M1/1‑9 (MQ=255)
                            ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt       <  1:6694722‑M1/29‑1 (MQ=255)
                            ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt       >  1:10083207‑M1/7‑35 (MQ=255)
                            ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt       >  1:10786943‑M1/7‑35 (MQ=255)
                            ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt       >  1:3003347‑M1/7‑35 (MQ=255)
                             tgaaaTTTGTACTGCACCCATTTTGTTGGACGATg      <  1:9306884‑M1/30‑1 (MQ=255)
                             tgaaaTTTGTACTGCACCCATTTTGTTGGACGATg      <  1:12650597‑M1/30‑1 (MQ=255)
                             gcagTTTTGTACTGCACCCATTTTGTTGGACGATg      >  1:12415538/1‑35 (MQ=255)
                              gtgTTGTGTACTGCACCCATTTTGTTGGACGATGa     <  1:16766994/33‑1 (MQ=11)
                              gaaaTTTGTACTGCACCCATTTTGTTGGACGATGa     >  1:7244517‑M1/5‑35 (MQ=255)
                               agTTTTGTACTGCACCCATTTTGTTGGACGATGaa    <  1:19068789/35‑1 (MQ=40)
                               aaaTTTGTACTGCACCCATTTTGTTGGACGATGaa    >  1:6331747‑M1/4‑35 (MQ=255)
                               aaaTTTGTACTGCACCCATTTTGTTGGACGATGaa    >  1:9627609‑M1/4‑35 (MQ=255)
                                caTGTGTACTGCACCCATTTTGTTGGACGATGaaa   <  1:12223212‑M1/33‑1 (MQ=255)
                                aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa   <  1:12305354‑M1/33‑1 (MQ=255)
                                aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa   <  1:18946184‑M1/33‑1 (MQ=255)
                                  |                                 
GGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAT  >  REL606/664652‑664719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.