New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 212468 =63 (0.610)18 (0.200) 5/42 NT 18.6% intergenic (+46/‑53) accA/ldcC acetyl‑CoA carboxylase subunit alpha/lysine decarboxylase 2, constitutive
?REL606 235476 = 117 (1.140)intergenic (+3/+45) yafE/mltD predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase/predicted membrane‑bound lytic murein transglycosylase D

Only 100 of 185 total aligned reads displayed.

TCATCATGGTAGAAGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATT  >  REL606/235442‑235510
                                  |                                  
tcatcaTGGTAGAAGCACATAAAGCGGCatatata                                    <  1:4092784/35‑1 (MQ=255)
tcatcaTGGTAGAAGCACATAAAGCGGCataaata                                    <  1:14526341/35‑1 (MQ=255)
tcatcaTGGTAGAAGCACATAAAGCGGCataaata                                    <  1:2306976/35‑1 (MQ=255)
tcatcaTGGTAGAAGCACATAAAGCGGCataaata                                    >  1:9146875/1‑35 (MQ=255)
 catcatGGTAGAAGCACATAAAGCGGCataaataa                                   >  1:17425385/1‑35 (MQ=255)
  ttaatcatagcctgctcaaaccgtggcgaaaaaaa                                  >  1:16424864‑M2/33‑35 (MQ=255)
  atcatGGTAGAAGCACATAAAGCGGCAtaaataaa                                  >  1:12900165/1‑35 (MQ=255)
  atcatGGTAGAAGCACATAAAGCGGCAtaaataaa                                  <  1:5306930/35‑1 (MQ=255)
   tcatGGTAGAAGCACATAAAGCGGCATAAATaaaa                                 <  1:11008572/35‑1 (MQ=255)
   tcatGGTAGAAGCACATAAAGCGGCATAAATaaaa                                 >  1:12547740/1‑35 (MQ=255)
   tcatGGTAGAAGCACATAAAGCGGCATAAATaaaa                                 >  1:5187311/1‑35 (MQ=255)
   tcatGGTAGAAGCACATAAAGCGGCATAAATaaaa                                 <  1:6739762/35‑1 (MQ=255)
   tcatGGTAGAAGCACATAAAGCGGCATAAATaaaa                                 <  1:11231887/35‑1 (MQ=255)
   taatcatagcctgctcaaaccgtggcgaaaaaaaa                                 >  1:7156247‑M2/32‑35 (MQ=255)
     atcatagcctgctcaaaccgtggcgaaaaaaaaag                               >  1:17214101‑M2/30‑34 (MQ=255)
     atcatagcctgctcaaaccgtggcgaaaaaaaaag                               >  1:15146903‑M2/30‑34 (MQ=255)
     atcatagcctgctcaaaccgtggcgaaaaaaaaaa                               >  1:6242567‑M2/30‑35 (MQ=255)
     atGGTAGAAGCACATAAAGCGGCATAAATaaaaaa                               >  1:4412008/1‑35 (MQ=255)
      tcatagcctgctcaaaccgtggcgaaaaAAAAAAg                              >  1:20437696‑M2/29‑35 (MQ=255)
      tGGTAGAAGCACATAAAGCGGCATAAATAAAAAAg                              >  1:695320/1‑35 (MQ=255)
      tGGTAGAAGCACATAAAGCGGCATAAATAAAAAAg                              <  1:7097987/35‑1 (MQ=255)
       ggTAGAAGCACATAAAGCGGCATAAATAAAAAAgg                             >  1:15960139/1‑35 (MQ=255)
       ggTAGAAGCACATAAAGCGGCATAAATAAAAAAgg                             >  1:17704013/1‑35 (MQ=255)
       ggTAGAAGCACATAAAGCGGCATAAATAAAAAAgg                             <  1:19897637/35‑1 (MQ=255)
       ggTAGAAGCACATAAAGCGGCATAAATAAAAAAgg                             <  1:2157378/35‑1 (MQ=255)
       ggTAGAAGCACATAAAGCGGCATAAATAAAAAAgg                             >  1:3761145/1‑35 (MQ=255)
       catagcctgctcaaaccgtggcgataaAAAAAagc                             >  1:2965927‑M2/28‑34 (MQ=255)
       catagcctgctcaaaccgtggcgaaaaAAAAAaga                             >  1:4182871‑M2/28‑34 (MQ=255)
        gaaGAAGCACATAAAGCGGCATAAATAAAAAAGGc                            >  1:15740441/3‑35 (MQ=255)
        gTAGAAGCACATAAAGCGGCATAAATAAAAAAGGc                            <  1:20572789/35‑1 (MQ=255)
        gTAGAAGCACATAAAGCGGCATAAATAAAAAAGGc                            <  1:10137535/35‑1 (MQ=255)
        atagcctgctcaaaccgtggcgaaaaAAAAaagcc                            >  1:19096698‑M2/27‑33 (MQ=255)
        atagcctgctcaaaccgtggcgaaaaAAAAaagac                            >  1:1441282‑M2/27‑33 (MQ=255)
         tagcctgctcaaaccgtggcgaaaaAAAAAAGgcc                           >  1:9862902‑M2/26‑34 (MQ=255)
         tAGAAGCACATAAAGCGGCATAAATAAAAAAGGCa                           >  1:19189214/1‑35 (MQ=255)
         tAGAAGCACATAAAGCGGCATAAATAAAAAAGGCa                           >  1:15012360/1‑35 (MQ=255)
         tAGAAGCACATAAAGCGGCATAAATAAAAAAGGCa                           >  1:8377468/1‑35 (MQ=255)
          aGAAGCACATAAAGCGGCATAAATAAAAAAGGCAc                          <  1:12766806/35‑1 (MQ=255)
          aGAAGCACATAAAGCGGCATAAATAAAAAAGGCAc                          >  1:8190373/1‑35 (MQ=255)
          aGAAGCACATAAAGCGGCATAAATAAAAAAGGCAc                          >  1:11721464/1‑35 (MQ=255)
           gcctgctcaaaccgtggcgaaaaAAAAAAGgcaac                         >  1:11531287‑M2/24‑33 (MQ=255)
           gAAGCACATAAAGCGGCATAAATAAAAAAGGCAcc                         >  1:19245300/1‑35 (MQ=255)
           gAAGCACATAAAGCGGCATAAATAAAAAAGGCAcc                         >  1:4374945/1‑35 (MQ=255)
           gAAGCACATAAAGCGGCATAAATAAAAAAGGCAcc                         <  1:17570842/35‑1 (MQ=255)
           gAAGCACATAAAGCGGCATAAATAAAAAAGGCAcc                         <  1:14225798/35‑1 (MQ=255)
            cctgctcaaaccgtggcgaaaaAAAAAAGCCaccc                        >  1:7447684‑M2/23‑34 (MQ=255)
            aaGCACATAAAGCGGCATAAATAAAAAAGGCACCg                        >  1:19959818/1‑35 (MQ=255)
            aaGCACATAAAGCGGCATAAATAAAAAAGGCACCg                        >  1:5291258/1‑35 (MQ=255)
            aaGCACATAAAGCGGCATAAATAAAAAAGGCACCg                        >  1:9740459/1‑35 (MQ=255)
            aaGCACATAAAGCGGCATAAATAAAAAAGGCACCg                        <  1:12829406/35‑1 (MQ=255)
             aGCACATAAAGCGGCATAAATAAAAAAGGCACCgg                       <  1:8715573/35‑1 (MQ=255)
             aGCACATAAAGCGGCATAAATAAAAAAGGCACCgg                       <  1:14639384/35‑1 (MQ=255)
              tgctcaaaccgtggcgaaaaAAAAAAGGCAccgca                      >  1:5983103‑M2/21‑33 (MQ=255)
              gCACATAAAGCGGCATAAATAAAAAAGGCACCggg                      >  1:4658798/1‑35 (MQ=255)
              gCACATAAAGCGGCATAAATAAAAAAGGCACCggg                      >  1:4131885/1‑35 (MQ=255)
              gCACATAAAGCGGCATAAATAAAAAAGGCACCggg                      <  1:1649264/35‑1 (MQ=255)
               cacaTAAAGCGGCATAAATAAAAAAGGCACCgggg                     <  1:19776419/35‑1 (MQ=255)
               cacaTAAAGCGGCATAAATAAAAAAGGCACCgggg                     <  1:3415288/35‑1 (MQ=255)
                acaTAAAGCGGCATAAATAAAAAAGGCACCggggg                    >  1:344667/1‑35 (MQ=255)
                acaTAAAGCGGCATAAATAAAAAAGGCACCggggg                    >  1:10257452/1‑35 (MQ=255)
                 caTAAAGCGGCATAAATAAAAAAGGCACCGGGGGa                   >  1:10631899/1‑35 (MQ=255)
                   tAAAGCGGCATAAATAAAAAAGGCACCGGGGGAAt                 <  1:757860/35‑1 (MQ=255)
                   tAAAGCGGCATAAATAAAAAAGGCACCGGGGGAAt                 >  1:7667563/1‑35 (MQ=255)
                   tAAAGCGGCATAAATAAAAAAGGCACCGGGGGAAt                 <  1:18106149/35‑1 (MQ=255)
                   tAAAGCGGCATAAATAAAAAAGGCACCGGGGGAAt                 >  1:16256327/1‑35 (MQ=255)
                    aaaGCGGCATAAATAAAAAAGGCACCGGGGGAATc                >  1:18914748/1‑35 (MQ=255)
                    aaaGCGGCATAAATAAAAAAGGCACCGGGGGAATc                >  1:7718824/1‑35 (MQ=255)
                    aaaGCGGCATAAATAAAAAAGGCACCGGGGGAATc                >  1:1864487/1‑35 (MQ=255)
                    aaaGCGGCATAAATAAAAAAGGCACCGGGGGAATc                <  1:139310/35‑1 (MQ=255)
                     aaGCGGCATAAATAAAAAAGGCACCGGGGGAATCg               <  1:12352135/35‑1 (MQ=255)
                     aaGCGGCATAAATAAAAAAGGCACCGGGGGAATCg               <  1:10129184/35‑1 (MQ=255)
                     aaGCGGCATAAATAAAAAAGGCACCGGGGGAATCg               <  1:17273192/35‑1 (MQ=255)
                       gCGGCATAAATAAAAAAGGCACCGGGGGAATCGGt             <  1:16185938/35‑1 (MQ=255)
                       gCGGCATAAATAAAAAAGGCACCGGGGGAATCGGt             <  1:16993210/35‑1 (MQ=255)
                       gCGGCATAAATAAAAAAGGCACCGGGGGAATCGGt             <  1:17061360/35‑1 (MQ=255)
                        cGGCATAAATAAAAAAGGCACCGGGGGAATCGGTg            <  1:3870425/35‑1 (MQ=255)
                        cGGCATAAATAAAAAAGGCACCGGGGGAATCGGTg            >  1:2726477/1‑35 (MQ=255)
                         ggCATAAATAAAAAAGGCACCGGGGGAATCGGTGc           <  1:11449461/35‑1 (MQ=255)
                          gCATAAATAAAAAAGGCACCGGGGGAATCGGTGcc          >  1:20505462/1‑35 (MQ=255)
                           cATAAATAAAAAAGGCACCGGGGGAATCGGTGCCt         <  1:5960134/35‑1 (MQ=255)
                           cATAAATAAAAAAGGCACCGGGGGAATCGGTGCCt         >  1:12038030/1‑35 (MQ=255)
                           cATAAATAAAAAAGGCACCGGGGGAATCGGTGCCt         >  1:18966290/1‑35 (MQ=255)
                           cATAAATAAAAAAGGCACCGGGGGAATCGGTGCCt         <  1:16413575/35‑1 (MQ=255)
                            ataaataaAAAAGGCACCGGGGGAATCGGTGCCtt        <  1:14245030/35‑1 (MQ=255)
                            ataaataaAAAAGGCACCGGGGGAATCGGTGCCtt        <  1:19437178/35‑1 (MQ=255)
                            ataaataaAAAAGGCACCGGGGGAATCGGTGCCtt        >  1:6804362/1‑35 (MQ=255)
                            ataaataaAAAAGGCACCGGGGGAATCGGTGCCtt        >  1:14210875/1‑35 (MQ=255)
                            ataaataaAAAAGGCACCGGGGGAATCGGTGCCtt        >  1:9791486/1‑35 (MQ=255)
                             taaataaaAAAGGCACCGGGGGAATCGGTGCCttt       <  1:5589751/35‑1 (MQ=255)
                             taaataaaAAAGGCACCGGGGGAATCGGTGCCttt       >  1:13355221/1‑35 (MQ=255)
                             taaataaaAAAGGCACCGGGGGAATCGGTGCCttt       >  1:18832074/1‑35 (MQ=255)
                              aaataaaAAAGGCACCGGGGGAATCGGTGCCtttt      <  1:8446882/35‑1 (MQ=255)
                              aaataaaAAAGGCACCGGGGGAATCGGTGCCtttt      <  1:15397885/35‑1 (MQ=255)
                              aaataaaAAAGGCACCGGGGGAATCGGTGCCtttt      >  1:11515361/1‑35 (MQ=255)
                               aataaaAAAGGCACCGGGGGAATCGGTGCCttttt     <  1:19331774/35‑1 (MQ=255)
                                  aaaaaaGGCACCGGGGGAATCGGTGCCTTTttatt  >  1:18686266/1‑35 (MQ=255)
                                  aaaaaaGGCACCGGGGGAATCGGTGCCTTTttatt  <  1:18865068/35‑1 (MQ=255)
                                  aaaaaaGGCACCGGGGGAATCGGTGCCTTTttatt  >  1:2537789/1‑35 (MQ=255)
                                  aaaaaaGGCACCGGGGGAATCGGTGCCTTTttatt  >  1:13092595/1‑35 (MQ=255)
                                  aaaaaaGGCACCGGGGGAATCGGTGCCTTTttatt  >  1:13031727/1‑35 (MQ=255)
                                  |                                  
TCATCATGGTAGAAGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATT  >  REL606/235442‑235510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.