New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1534318 = | 71 (0.690) | 12 (0.150) | 4/38 | NT | 24.9% | coding (550/1023 nt) | yddR | D‑ala‑D‑ala transporter subunit |
? | REL606 | = 2036370 | 16 (0.200) | coding (589/1113 nt) | wbbC | putative glycosyltransferase WbbC |
GTTTATCTTCATGCAAAGCACCCACCGAGAAAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGAT > REL606/2036337‑2036404 | gTTTATCTTCATGCAAAGCACCCACCGAGAAAAAa < 1:17396908‑M2/35‑2 (MQ=255) tCTTCATGCAAAGCACCCACCGAGAAAAAAAAAgg < 1:5632973/35‑1 (MQ=255) cTTCATGCAAAGCACCCACCGAGAAAAAAAAAGGt > 1:9962516/1‑35 (MQ=255) cTTCATGCAAAGCACCCACCGAGAAAAAAAAAGGt > 1:20547159/1‑35 (MQ=255) cATGCAAAGCACCCACCGAGAAAAAAAAAGGTTca < 1:5092057/35‑1 (MQ=255) tGCAAAGCACCCACCGAGAAAAAAAAAGGTTcaca < 1:7260203/35‑1 (MQ=255) tGCAAAGCACCCACCGAGAAAAAAAAAGGTTcaca < 1:7205585/35‑1 (MQ=255) gCAAAGCACCCACCGAGAAAAAAAAAGGTTCACaa > 1:14101442/1‑35 (MQ=255) aaaGCACCCACCGAGAAAAAAAAAGGTTCACAATc < 1:18050836/35‑1 (MQ=255) aaGCACCCACCGAGAAAAAAAAAGGTTCACAATCa > 1:1326609/1‑35 (MQ=255) aaGCACCCACCGAGAAAAAAAAAGGTTCACAATCa > 1:10642294/1‑35 (MQ=255) cccccaccGAGAAAAAAAAAGGTTCACAATCatat < 1:9965452/33‑1 (MQ=255) cccaccGAGAAAAAAAAAGGTTCACAATCATATTg > 1:15771617/1‑35 (MQ=255) gcagcgAGAAAAAaaaagccggtaacgtgcgttgg > 1:7319422‑M2/2‑13 (MQ=255) gcaccaAGAAAAAaaaagccggtaacgtgcgttgg > 1:14878415‑M2/2‑13 (MQ=255) gcaacgAGAAAAAaaaagccggtaacgtgcgttgg > 1:7796676‑M2/2‑13 (MQ=255) caccGAGAAAAAAAAAGGTTCACAATCATATTGgt < 1:20454440/35‑1 (MQ=255) accGAAAAAAAaaaagccggtaacgtgcgttggtg > 1:3454113‑M2/1‑11 (MQ=255) gcgAAAAAAAaaaagccggtaacgtgcgttggtgg > 1:16611306‑M2/2‑10 (MQ=255) ccGAGAAAAAAAAAGGTTCACAATCATATTGgtgt < 1:19079918/35‑1 (MQ=255) ccGAGAAAAAAAAAGGTTCACAATCATATTGgtgt > 1:13169272/1‑35 (MQ=255) ggagaaAAAaaaagccggtaacgtgcgttggtgga > 1:13390894‑M2/2‑9 (MQ=255) cGAGAAAAAaaaagccggtaacgtgcgttggtgga > 1:8514367‑M2/1‑9 (MQ=255) cGAGAAAAAAAAAGGTTCACAATCATATTGGTGta < 1:10177228/35‑1 (MQ=255) cGAGAAAAAAAAAGGTTCACAATCATATTGGTGta > 1:9210303/1‑35 (MQ=255) gagaAAAAAAAATGTTCACAATCATATTGGTGtat > 1:14472584/1‑35 (MQ=255) aagaaAAAaaaagccggtaacgtgcgttggtggat > 1:5416206‑M2/2‑8 (MQ=255) agaAGAAaaaagccggtaacgtgcgttggtggatc > 1:18516955‑M2/1‑7 (MQ=255) agaAAAAaaaagccggtaacgtgcgttggtggatc > 1:5664242‑M2/1‑7 (MQ=255) agaAAAAaaaagccggtaacgtgcgttggtggatc > 1:14162110‑M2/1‑7 (MQ=255) agaAAAAAAAAGGTTCACAATAATATTGGTGtata < 1:12059627/35‑1 (MQ=255) gaAAAAaaaagccggtaacgtgcgttggtggatcc > 1:18963262‑M2/1‑6 (MQ=255) gaAAAAAAAAGGTTCACAATCATATTGGTGTATag > 1:19824118/1‑35 (MQ=255) aaaaaaaaagccggtaacgtgcgttggtggatcca > 1:16322120‑M2/1‑5 (MQ=255) aaaaaaaaaGGTTCACAATCATATTGGTGTATaga < 1:13749163/35‑1 (MQ=255) aaaaaaaaaGGTTCACAATCATATTGGTGTATaga > 1:17650263/1‑35 (MQ=255) aaaaaaaagccggtaacgtgcgttggtggatccag > 1:11425654‑M2/1‑4 (MQ=255) aaaaaaaagccggtaacgtgcgttggtggatccag > 1:8961321‑M2/1‑4 (MQ=255) aaaaaaaagccggtaacgtgcgttggtggatccag > 1:9761052‑M2/1‑4 (MQ=255) aaaaaaaaGGTTCACAATCATATTGGTGTATagag > 1:20005452/1‑35 (MQ=255) aaaaaaaaGGTTCACAATCATATTGGTGTATagag < 1:6429631/35‑1 (MQ=255) aaaaaaagccggtaacgtgcgttggtggatccagc > 1:12339290‑M2/1‑3 (MQ=255) aaaaaagccggtaacgtgcgttggtggatccagcc > 1:8274339‑M2/1‑2 (MQ=255) aaaaagccggtaacgtgcgttggtggatccagcca > 1:15980558‑M2/1‑1 (MQ=255) aaaaagccggtaacgtgcgttggtggatccagcca > 1:11059650‑M2/1‑1 (MQ=255) aaaaaGGTTCACAATCATATTGGTGTATAGAGGAt < 1:6321103/35‑1 (MQ=255) aaaaaGGTTCACAATCATATTGGTGTATAGAGGAt < 1:19420843/35‑1 (MQ=255) | GTTTATCTTCATGCAAAGCACCCACCGAGAAAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGAT > REL606/2036337‑2036404 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |