New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1349554 =66 (0.640)10 (0.130) 4/36 NT 18.6% intergenic (‑146/+222) fabI/ycjD enoyl‑(acyl carrier protein) reductase/hypothetical protein
?REL606 = 3574369 38 (0.490)coding (1504/2043 nt) prlC oligopeptidase A

Only 100 of 119 total aligned reads displayed.

TCAGGCTCCCAGCACCAGTTTTCCATAAACTGACTCGGCAGTTCGACCGCATCCCACGGCACCCCACTG  >  REL606/3574335‑3574403
                                  |                                  
tCAGGCTCCCAGCACCAGTTTTCCATAAACTGACt                                    <  1:12514356/35‑1 (MQ=255)
tCAGGCTCCCAGCACCAGTTTTCCATAAACTGACt                                    >  1:17649682/1‑35 (MQ=255)
tCAGGCTCCCAGCACCAGTTTTCCATAAACTGACt                                    <  1:8056449/35‑1 (MQ=255)
tCAGGCTCCCAGCACCAGTTTTCCATAAACTGACt                                    >  1:2461103/1‑35 (MQ=255)
 cAGGCTCCCAGCACCAGTTTTCCATAAACTGACTc                                   <  1:17822143‑M2/35‑2 (MQ=255)
 cAGGCTCCCAGCACCAGTTTTCCATAAACTGACTc                                   <  1:594455‑M2/35‑2 (MQ=255)
  aGTCTCCCAGCACCAGTTTTCCATAAACTGACTcg                                  >  1:315647‑M2/1‑33 (MQ=255)
  aGGCTCCCAGCACCAGTTTTCCATAAACTGACTcg                                  >  1:17175787‑M2/1‑33 (MQ=255)
  aGGCTCCCAGCACCAGTTTTCCATAAACTGACTcg                                  >  1:12819623‑M2/1‑33 (MQ=255)
  aGGCTCCCAGCACCAGTTTTCCATAAACTGACTcg                                  <  1:16756993‑M2/35‑3 (MQ=255)
  aGGCTCCCAGCACCAGTTTTCCATAAACTGACTcg                                  <  1:4473084‑M2/35‑3 (MQ=255)
  aGGCTCCCAGCACCAGTTTTCCATAAACTGACTcg                                  <  1:14458484‑M2/35‑3 (MQ=255)
  aGGCTCCCAGCACCAGTTTTCCATAAACTGACTcg                                  <  1:8409355‑M2/35‑3 (MQ=255)
  aGGATCCCAGCACCAGTTTTCCATAAACTGACTcg                                  >  1:9295601‑M2/1‑33 (MQ=255)
   ggCTCCCAGCACCAGTTTTCCATAAACTGACTcgg                                 >  1:11599565‑M2/1‑32 (MQ=255)
   ggCTCCCAGCACCAGTTTTCCATAAACTGACTcgg                                 >  1:15584467‑M2/1‑32 (MQ=255)
    gCTCCCAGCACCAGTTTTCCATAAACTGACTcggc                                <  1:13374989‑M2/35‑5 (MQ=255)
    gCTCCCAGCACCAGTTTTCCATAAACTGACTcggc                                >  1:1413067‑M2/1‑31 (MQ=255)
    gCTCCCAGCACCAGTTTTCCATAAACTGACTcggc                                >  1:20278243‑M2/1‑31 (MQ=255)
    gCTCCCAGCACCAGTTTTCCATAAACTGACTcggc                                >  1:335257‑M2/1‑31 (MQ=255)
     cTCCCAGCACCAGTTTTCCATAAACTGACTcggca                               <  1:12985701‑M2/35‑6 (MQ=255)
     cTCCCAGCACCAGTTTTCCATAAACTGACTcggca                               <  1:8262611‑M2/35‑6 (MQ=255)
      tCCCAGCACCAGTTTTCCATAAACTGACTcggcag                              <  1:20057103‑M2/35‑7 (MQ=255)
       cccAGCACCAGTTTTCCATAAACTGACTcggcagg                             <  1:15692893‑M2/35‑8 (MQ=255)
       cccAGCACCAGTTTTCCATAAACTGACTCGGCAGt                             <  1:7294129/35‑1 (MQ=255)
       cccAGCACCAGTTTTCCATAAACTGACTCGGCAGt                             <  1:8045856/35‑1 (MQ=255)
       cccAGCACCAGTTTTCCATAAACTGACTCGGCAGt                             <  1:10108670/35‑1 (MQ=255)
        ccAGCACCAGTTTTCCATAAACTGACTcggcaggg                            <  1:9237841‑M2/35‑9 (MQ=255)
        ccAGCACCAGTTTTCCATAAACTGACTcggcaggg                            <  1:10632633‑M2/35‑9 (MQ=255)
        ccAGCACCAGTTTTCCATAAACTGACTcggcaggg                            <  1:4546702‑M2/35‑9 (MQ=255)
        ccAGCACCAGTTTTCCATAAACTGACTCGGCAGtt                            <  1:7128632/35‑1 (MQ=255)
        ccAGCACCAGTTTTCCATAAACTGACTCGGCAGtt                            <  1:18599467/35‑1 (MQ=255)
         cAGCACCAGTTTTCCATAAACTGACTcggcagggg                           <  1:4121101‑M2/35‑10 (MQ=255)
         cAGCACCAGTTTTCCATAAACTGACTCGGCAGTTc                           <  1:2234212/35‑1 (MQ=255)
         cAGCACCAGTTTTCCATAAACTGACTCGGCAGTTc                           <  1:10156433/35‑1 (MQ=255)
         cAGCACCAGTTTTCCATAAACTGACTCGGCAGTTc                           <  1:17662685/35‑1 (MQ=255)
         cAGCACCAGTTTTCCATAAACTGACTCGGCAGTTc                           <  1:11698682/35‑1 (MQ=255)
         cAGCACCAGTTTTCCATAAACTGACTCGGCAGTTc                           <  1:11024962/35‑1 (MQ=255)
         cAGCACCAGTTTTCCATAAACTGACTCGGCAGTTc                           <  1:17081025/35‑1 (MQ=255)
          aGCACCAGTTTTCCATAAACTGACTcggcaggggg                          <  1:19629439‑M2/35‑11 (MQ=255)
          aGCACCAGTTTTCCATAAACTGACTcggcaggggg                          <  1:8467093‑M2/35‑11 (MQ=255)
           gCACCAGTTTTCCATAAACTGACTcggcagggggg                         <  1:2716381‑M2/35‑12 (MQ=255)
           gCACCAGTTTTCCATAAACTGACTcggcagggggg                         <  1:754006‑M2/35‑12 (MQ=255)
           gCACCAGTTTTCCATAAACTGACTCGGCAGTTCGa                         <  1:19969960/35‑1 (MQ=255)
           gCACCAGTTTTCCATAAACTGACTCGGCAGTTCGa                         <  1:20541102/35‑1 (MQ=255)
            cACCAGTTTTCCATAAACTGACTcggcaggggtgg                        <  1:14999080‑M2/35‑13 (MQ=255)
            cACCAGTTTTCCATAAACTGACTcggcaggggggg                        <  1:11749451‑M2/35‑13 (MQ=255)
            cACCAGTTTTCCATAAACTGACTcggcaggggggg                        <  1:3555004‑M2/35‑13 (MQ=255)
            cACCAGTTTTCCATAAACTGACTCGGCAGTTCGAc                        <  1:5232919/35‑1 (MQ=255)
            cACCAGTTTTCCATAAACTGACTCGGCAGTTCGAc                        <  1:13205937/35‑1 (MQ=255)
            cACCAGTTTTCCATAAACTGACTCGGCAGTTCGAc                        <  1:13674900/35‑1 (MQ=255)
             aCCAGTTTTCCATAAACTGACTcggcagggggggg                       <  1:15511621‑M2/35‑14 (MQ=255)
             aCCAGTTTTCCATAAACTGACTcggcagggggggc                       <  1:17329054‑M2/35‑14 (MQ=255)
             aCCAGTTTTCCATAAACTGACTCGGCAGTTCGAcc                       <  1:20024699/35‑1 (MQ=255)
             aCCAGTTTTCCATAAACTGACTCGGCAGTTCGAcc                       <  1:15584931/35‑1 (MQ=255)
              ccAGTTTTCCATAAACTGACTcggcaggggggcgg                      <  1:13828613‑M2/35‑15 (MQ=255)
              ccAGTTTTCCATAAACTGACTCGGCAGTTCGACCg                      <  1:78974/35‑1 (MQ=255)
              ccAGTTTTCCATAAACTGACTCGGCAGTTCGACCg                      <  1:14930414/35‑1 (MQ=255)
              ccAGTTTTCCATAAACTGACTCGGCAGTTCGACCg                      <  1:5476469/35‑1 (MQ=255)
              ccAGTTTTCCATAAACTGACTCGGCAGTTCGACCg                      <  1:14209432/35‑1 (MQ=255)
              ccAGTGTTCCATAAACTGACTCGGCAGTTCGACCg                      <  1:12904508/35‑1 (MQ=255)
               cAGTTTTCCATAAACTGACTcggcagggggggcgg                     <  1:11568642‑M2/35‑16 (MQ=255)
               cAGTTTTCCATAAACTGACTcggcagggggggcgc                     <  1:7817516‑M2/35‑16 (MQ=255)
                 gTTTTCCATAAACTGACTCGGCAGTTCGACCGCAt                   <  1:13902427/35‑1 (MQ=255)
                  ttttCCATAAACTGACTcggcagggggggcgctcc                  <  1:13773806‑M2/35‑19 (MQ=255)
                  ttttCCATAAACTGACTcggcagggggggcgcgtc                  <  1:1623841‑M2/35‑19 (MQ=255)
                  tttcCCAAAACCTGACTCGGCAGTTCGACCGCATc                  <  1:10267740/35‑1 (MQ=25)
                    ttCCATAAACTGACTCGGCAGTTCGACCGCATccc                <  1:7053168/35‑1 (MQ=255)
                      ccATAAACTGACTCGGCAGTTCGACCGCATCCCAc              <  1:15130505/35‑1 (MQ=255)
                      ccATAAACTGACTCGGCAGTTCGACCGCATCCCAc              <  1:11309963/35‑1 (MQ=255)
                      ccATAAACTGACTCGGCAGTTCGACCGCATCCCAc              <  1:16048505/35‑1 (MQ=255)
                       naTAAACTGACTCGGCAGTTCGACCGCATCCCACn             <  1:14035652/34‑1 (MQ=255)
                       cATAAACTGACTCTGCAGTTCGACCGCATCCCACg             >  1:5635013/1‑35 (MQ=255)
                       cATAAACTGACTCGGCAGTTCGACCGCATCCCACg             <  1:11213977/35‑1 (MQ=255)
                        aaaaaCTGACTCGGCAGTTCGACCGCATCCCACgg            <  1:4426870/33‑1 (MQ=255)
                        aTAAACTGACTCGGCAGTTCGACCGCATCCCATgg            <  1:19116810/35‑1 (MQ=255)
                        aTAAACTGACTCGGCAGTTCGACCGCATCCCACgg            <  1:7169855/35‑1 (MQ=255)
                        aTAAACTGACTCGGCAGTTCGACCGCATCCCACgg            <  1:17967284/35‑1 (MQ=255)
                         tAACCTGACTCGGCAGTTCGACCGCATCCCACGGc           <  1:7985840/35‑1 (MQ=255)
                         tAACCTGACTCGGCAGTTCGACCGCATCCCACGGc           <  1:12033985/35‑1 (MQ=255)
                          aaaCTGACTCGGCAGTTCGACCGCATCCCACGGCa          <  1:19245766/35‑1 (MQ=255)
                           aaCTGACTCGGAAGTTCGACCGCATCCCACGGCAc         <  1:5186591/35‑1 (MQ=255)
                            ccTGACTCGGCAGTTCGACCGCATCCCACGGCAcc        <  1:5119855/34‑1 (MQ=255)
                            ccTGACTCGGCAGTTCGACCGCATCCCACGGCAcc        <  1:15737832/34‑1 (MQ=255)
                            aCTGACTCGGCAGTTCGACCGCATCCCACGGCAcc        <  1:18532744/35‑1 (MQ=255)
                             cTGACTCGGCAGTTCGCCCGCATCCCACGGCAccc       <  1:15339562/35‑1 (MQ=255)
                              tGACTCGGCAGTTCGACCGCATCCCACGGCAcccc      <  1:10393536/35‑1 (MQ=255)
                               gACTCGGCAGTTCGACCGCATCCCACGGCACCCCa     <  1:16612276/35‑1 (MQ=255)
                               gACTCGGCAGTTCGACCGCATCCCACGGCACCCCa     <  1:4250182/35‑1 (MQ=255)
                               gACTCGGCAGTTCGACCGCATCCCACGGCACCCCa     <  1:3436098/35‑1 (MQ=255)
                               gACTCGGCAGTTCGACCGCATCCCACGGCACCCCa     <  1:10600324/35‑1 (MQ=255)
                                gcTCGGCAGTTCGACCGCATCCCACGGCACCCCAc    <  1:1440723/34‑1 (MQ=255)
                                aCTCGGCAGGTCGACCGCATCCCACGGCACCCCAc    >  1:20571317/1‑35 (MQ=255)
                                 cTCGGCAGTTCGACCGCATCCCACGGCACCCCACt   <  1:18557174/35‑1 (MQ=255)
                                 cTCGGCAGTTCGACCGCATCCCACGGCACCCCACt   <  1:11643750/35‑1 (MQ=255)
                                  tCGGCATTGCGCCCGCATCCCACGGCACCCCACtt  <  1:15668474/35‑2 (MQ=21)
                                  tCGGCAGTTCGACCGCATCCCACGGCACCCCACTg  <  1:12530332/35‑1 (MQ=255)
                                  tCGGCAGTTCGACCGCATCCCACGGCACCCCACTg  <  1:11027409/35‑1 (MQ=255)
                                  tCGGCAGTTCGACCGCATCCCACGGCACCCCACTg  <  1:20566690/35‑1 (MQ=255)
                                  tCGGCAGTTCGACCGCATCCCACGGCACCCCACTg  <  1:2020470/35‑1 (MQ=255)
                                  |                                  
TCAGGCTCCCAGCACCAGTTTTCCATAAACTGACTCGGCAGTTCGACCGCATCCCACGGCACCCCACTG  >  REL606/3574335‑3574403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.