New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 118158088 (0.860)8 (0.100) 3/38 NT 11.2% coding (919/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase
?REL606 2872317 = 57 (0.700)coding (1204/1263 nt) lysA diaminopimelate decarboxylase, PLP‑binding

Only 100 of 114 total aligned reads displayed.

TCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGC  >  REL606/2872283‑2872351
                                   |                                  
tcttcGATGTTCTGGCGACGGCGAATCAACCccgc                                    >  1:5091512/1‑35 (MQ=37)
  ttcGATGGTCTGGCGACGGCGAATCAACCGCGCCt                                  >  1:11130428/1‑35 (MQ=255)
   tcGATGGTCTGGCGACGGCGAATCAACCGCGCCTg                                 >  1:13185630/1‑35 (MQ=255)
    cGATGGTCTGGCGACGGCGAATCAACCGCGCCTGa                                >  1:10210541/1‑35 (MQ=255)
     gATGGTCTGGCGACGGCGAATCAACCGCGCCTGAc                               >  1:8483323/1‑35 (MQ=255)
      aTGGTCTGGCGACTGCGAATCAACCGCGCCTGAcc                              >  1:15291337/1‑35 (MQ=255)
      aTGGTCTGGCGACGGCGAATCAACCGCGCCTGAcc                              >  1:6783369/1‑35 (MQ=255)
       tGGTCTGGCGACGGCGAATCAAACGCGCCTGACCa                             >  1:16348004/1‑35 (MQ=255)
        ggTCTGGCGACGGCGAATCAACCGCGCCTGACCAt                            >  1:18556256/1‑35 (MQ=255)
         gTCTGGCGACGGCGAATCAACCTCGCCTGACCAtt                           >  1:13849540/1‑35 (MQ=255)
         gTCTGGCGACGGCGAATCAACCGCGCCTGACCAtt                           >  1:291109/1‑35 (MQ=255)
          tCTGGCGACGGCGAATCAACCGCGCCTGACCATTa                          >  1:11820437/1‑35 (MQ=255)
          tCTGGCGACGGCGAATCAACCGCGCCTGACCATTa                          >  1:12599004/1‑35 (MQ=255)
          tCTGGCGACGGCGAATCAACCGCGCCTGACCATTa                          >  1:4174536/1‑35 (MQ=255)
           cTGGCGACGGCGAATCAACCGCGCCTGACCATTAt                         >  1:16900145/1‑35 (MQ=255)
            tGGCGACGGCGAATCAACCGCGCCTGACCATTATc                        >  1:16395571/1‑35 (MQ=255)
            tGGCGACGGCGAATCAACCGCGCCTGACCATTATc                        >  1:13361223/1‑35 (MQ=255)
             ggCGACGGCGAATCAACCGCTCCTGACCATTATCa                       >  1:10492211/1‑35 (MQ=255)
             ggCGACGGCGAATCAACCGCGCCTGACCATTATCa                       >  1:16434678/1‑35 (MQ=255)
             ggCGACGGCGAATCAACCGCGCCTGACCATTATCa                       >  1:13048152/1‑35 (MQ=255)
             ggCGACGGCGAATCAACCGCGCCTGACCATTATCa                       >  1:17729237/1‑35 (MQ=255)
              gCGCCGGCGAACCACCCGCGCCTGACCATTATCaa                      <  1:8561950/35‑1 (MQ=25)
              gCGCCGGCAAACCACCCGCGCCTGACCATTATCaa                      <  1:8776078/35‑1 (MQ=19)
              gCGACTGCGAATCAACCGCGCCTGACCATTATCaa                      >  1:14251418/1‑35 (MQ=255)
              gCGACGGCGAATCAACCGCGCCTGACCATTATCaa                      >  1:19031857/1‑35 (MQ=255)
              gCGACGGCGAATCAACCGCGCCTGACCATTATCaa                      >  1:4931829/1‑35 (MQ=255)
               cGACGGCGAATCAACCGCGCCTGACCATTATCaaa                     >  1:8643929/1‑35 (MQ=255)
                gACTGCGAATCAACCGCGCCTGACCATTATCAAAc                    >  1:5754857/1‑35 (MQ=255)
                gACGGCGAATCAACCGCGCCTGACCATTATCAAAc                    >  1:2572760/1‑35 (MQ=255)
                gACGGCGAATCAACCGCGCCTGACCATTATCAAAc                    >  1:13336830/1‑35 (MQ=255)
                gACGGCGAATCAACCGCGCCTGACCATTATCAAAc                    >  1:2504454/1‑35 (MQ=255)
                gACGGCGAATCAACCGCGCCTGACCATTATCAAAc                    >  1:8255744/1‑35 (MQ=255)
                gACGGCGAATCAACCGCGCCTGACCATTATCAAAc                    >  1:8520225/1‑35 (MQ=255)
                gACGGCGAATCAACCGCGCCTGACCATTATCAAAc                    >  1:10123977/1‑35 (MQ=255)
                gACGCCGAATCACCCGCGCCTGACCATTATCAAAc                    <  1:20131749/35‑1 (MQ=37)
                 gcGGCGAACCACCCGCGCCTGACCATTATCAAACa                   <  1:570421/34‑1 (MQ=25)
                 aCGGCGAATCACCCGCGCCTGACCATTATCAAACa                   <  1:20362382/35‑1 (MQ=255)
                 aCGGCGAATCAACCGCGCCTGACCATTATCAAACa                   >  1:17498079/1‑35 (MQ=255)
                 aCGGCGAATCAACCGCGCCTGACCATTATCAAACa                   >  1:9518491/1‑35 (MQ=255)
                 aCGGCGAATCAACCGCGCCTGACCATTATCAAACa                   >  1:10088901/1‑35 (MQ=255)
                 aCGGCGAATCAACCGCGCCTGACCATTATCAAACa                   >  1:16868285/1‑35 (MQ=255)
                 aCGGCGAATCAACCGCGCCTGACCATTATCAAACa                   >  1:14175881/1‑35 (MQ=255)
                  ggacGAAACACCCGCGCCTGACCATTATCAAACAg                  <  1:3078761/32‑1 (MQ=25)
                  cGGCGAATCAACCGCGCCTGACCATTATCAAACAg                  >  1:19544827/1‑35 (MQ=255)
                  cGGCAAATCACCCGCGCCTGACCATTATAAAACAg                  <  1:20560156/35‑1 (MQ=25)
                   gggcaaaccacccgcgCCTGACCATTATCAAACAg                  <  1:6532756‑M2/19‑1 (MQ=255)
                   ggCGAATCAACCGCGCCTGACCATTATCAAACAGa                 >  1:11995251/1‑35 (MQ=255)
                   ggCGAATCAACCGCGCCTGACCATTATCAAACAGa                 >  1:15042050/1‑35 (MQ=255)
                    ggcaaaccacccgcgCCTGACCATTATCAAACAGa                 <  1:3833212‑M2/20‑1 (MQ=255)
                    gCGAATCAACCGCGCCTGACCATTATCAAACAGaa                >  1:11299605/1‑35 (MQ=255)
                    gCGAATCAACCGCGCCTGACCATTATCAAACAGaa                >  1:47903/1‑35 (MQ=255)
                    gCGAATCAACCGCGCCTGACCATTAACAAACAGaa                >  1:3863281/1‑35 (MQ=255)
                     gcgaaccacccgcgCCTGACCATTATCAAACAGaa                <  1:5035346‑M2/21‑1 (MQ=255)
                     caaaaccacccgcgCCTGACCATTATCAAACAGaa                <  1:17137696‑M2/21‑1 (MQ=255)
                      gAATCAACCGCGCCTGACCATTATCAAACAGAACt              >  1:66913/1‑35 (MQ=255)
                      caaaccacccgcgCCTGACCATTATCAAACAGAAc               <  1:4663460‑M2/22‑1 (MQ=255)
                       gaTCAACCCGCGCCTGACCATTATCAAACAGAACt              <  1:18489417/34‑1 (MQ=37)
                       aaTCAACCGCGCCTGACCATTATCAAACAGAACtt             >  1:423412/1‑35 (MQ=255)
                       aaTCAACCGCGCCTGACCATTATCAAACAGAACtt             >  1:385364/1‑35 (MQ=255)
                        aTCAACCGCGCCTGACCATTATCAAACAGAACTTc            >  1:1862486/1‑35 (MQ=255)
                         accacccgcgCCTGACCATTATCAAACAGAACTTc            <  1:17970523‑M2/25‑1 (MQ=255)
                          tcacccgcgCCTGACCATTATCAAACAGAACTTCt           <  1:12173202‑M2/26‑1 (MQ=255)
                          ccacccgcgCCTGACCATTATCAAACAGAACTTCt           <  1:10148562‑M2/26‑1 (MQ=255)
                          cAACCGCGCATGACCATTATCAAACAGAACTTCTg          <  1:5790833/35‑1 (MQ=255)
                          acacccgcgCCTGACCATTATCAAACAGAACTTCt           <  1:20313675‑M2/26‑1 (MQ=255)
                          acacccgcgCCTGACCATTATCAAACAGAACTTCt           <  1:8931517‑M2/26‑1 (MQ=255)
                           cacccgcgCCTGACCATTATCAAACAGAACTTCTg          <  1:3665170‑M2/27‑1 (MQ=255)
                           cacccgcgCCTGACCATTATCAAACAGAACTTCTg          <  1:15791783‑M2/27‑1 (MQ=255)
                            acccgcgCCTGACCATTATCAAACAGAACTTCTgg         <  1:17719599‑M2/28‑1 (MQ=255)
                            acccgcgCCTGACCATTATCAAACAGAACTTCTgg         <  1:10546972‑M2/28‑1 (MQ=255)
                            aCCTCGCCTGACCATTATCAAACAGAACTTCTGGt        >  1:14093408/1‑35 (MQ=255)
                            aCCGCGCCTGACCATTATCAAACAGAACTTCTGGt        >  1:16485857/1‑35 (MQ=255)
                            aCCGCGCCTGACCATTATCAAACAGAACTTCTGGt        >  1:17578426/1‑35 (MQ=255)
                            aCCGCGCCTGACCATTATCAAACAGAACTTCTGGt        >  1:452912/1‑35 (MQ=255)
                            aCCGCGCCTGACCATTATCAAACAGAACTTCTGGt        >  1:12603793/1‑35 (MQ=255)
                             cccgcgCCTGACCATTATCAAACAGAACTTCTGGt        <  1:8525138‑M2/29‑1 (MQ=255)
                             cccgcgCCTGACCATTATCAAACAGAACTTCTGGt        <  1:4962095‑M2/29‑1 (MQ=255)
                             cccgcgCCTGACCATTATCAAACAGAACTTCTGGt        <  1:19308749‑M2/29‑1 (MQ=255)
                             cccgcgCCTGACCATTATCAAACAGAAATTCTGGt        <  1:8561052‑M2/29‑1 (MQ=255)
                              ccgcgCCTGACCATTATCAAACAGAACTTCTGGTa       <  1:13268672‑M2/30‑1 (MQ=255)
                              ccgcgCCTGACCATTATCAAACAGAACTTCTGGTa       <  1:17786542‑M2/30‑1 (MQ=255)
                              ccgcgCCTGACCATTATCAAACAGAACTTCTGGTa       <  1:8862396‑M2/30‑1 (MQ=255)
                               cgcgCCTGACCATTATCAAACAGAACTTCTGGTaa      >  1:6323340‑M2/5‑35 (MQ=255)
                               cgcgCCTGACCATTATCAAACAGAACTTCTGGTaa      <  1:19777637‑M2/31‑1 (MQ=255)
                                gcgCCTGACCATTATCAAACAGAACTTCTGGTAAc     >  1:12120814‑M2/4‑35 (MQ=255)
                                gcgCCTGACCATTATCAAACAGAACTTCTGGTAAc     >  1:3395688‑M2/4‑35 (MQ=255)
                                gcgCCTGACCATTATCAAACAGAACTTCTGGTAAc     <  1:10687953‑M2/32‑1 (MQ=255)
                                 cgCCTGACCATTATCAAACAGAACTTCTGGTAACa    >  1:19370389‑M2/3‑35 (MQ=255)
                                 cgCCTGACCATTATCAAACAGAACTTCTGGTAACa    <  1:949267‑M2/33‑1 (MQ=255)
                                 cgCCTGACCATTATCAAACAGAACTTCTGGTAACa    >  1:9441348‑M2/3‑35 (MQ=255)
                                 cgCCTGACCATTATCAAACAGAACTTCTGGTAACa    >  1:7817113‑M2/3‑35 (MQ=255)
                                 cgCCTGACCATTATCAAACAGAACTTCTGGTAACa    <  1:17954251‑M2/33‑1 (MQ=255)
                                  gCCTGACCATTATCAAACAGAACTTCTGGTAACAg   <  1:15494417‑M2/34‑1 (MQ=255)
                                  gCCTGACCATTATCAAACAGAACTTCTGGTAACAg   >  1:15706322‑M2/2‑35 (MQ=255)
                                  gCCTGACCATTATCAAACAGAACTTCTGGTAACAg   >  1:18618698‑M2/2‑35 (MQ=255)
                                  gCCTGACCATTATCAAACAGAACTTCTGGTAACAg   >  1:2719616‑M2/2‑35 (MQ=255)
                                   ccTGACCATTATCAAACAGAACTTCTGGTAACAGc  <  1:238038/35‑1 (MQ=255)
                                   ccTGACCATTATCAAACAGAACTTCTGGTAACAGc  >  1:10632988/1‑35 (MQ=255)
                                   ccTGACCATTATCAAACAGAACTTCTGGTAACAGc  <  1:11968347/35‑1 (MQ=255)
                                   ccTGACCATTATCAAACAGAACTTCTGGTAACAGc  >  1:13851958/1‑35 (MQ=255)
                                   |                                  
TCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGC  >  REL606/2872283‑2872351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.