New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1349559 =56 (0.540)6 (0.060) 3/46 NT 8.3% intergenic (‑151/+217) fabI/ycjD enoyl‑(acyl carrier protein) reductase/hypothetical protein
?REL606 = 2307173 79 (0.800)coding (767/1218 nt) yfaW predicted enolase

Only 100 of 133 total aligned reads displayed.

TAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAACCCTCTC  >  REL606/1349525‑1349592
                                  |                                 
ttcagttcgcgataactttcatactgctgtggcgg                                   >  1:7971881‑M1/35‑35 (MQ=255)
ttcagttcgcgataactttcatactgctgtggcgg                                   >  1:7694183‑M1/35‑35 (MQ=255)
ttcagttcgcgataactttcatactgctgtggcgg                                   >  1:19827536‑M1/35‑35 (MQ=255)
ttcagttcgcgataactttcatactgctgtggcgg                                   >  1:19508312‑M1/35‑35 (MQ=255)
tcccagcaccagttttccataaactgactCGGCAg                                   <  1:20057103‑M1/6‑1 (MQ=255)
tcccagcaccagttttccataaactgactCGGCAg                                   <  1:11582145‑M1/6‑1 (MQ=255)
taGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAg                                   <  1:11834659/35‑1 (MQ=255)
taGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAg                                   >  1:15716331/1‑35 (MQ=255)
taGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAg                                   >  1:13632453/1‑35 (MQ=255)
 aGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgg                                  <  1:19324640/35‑1 (MQ=255)
 aGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgg                                  >  1:17328625/1‑35 (MQ=255)
 aGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgg                                  <  1:17043146/35‑1 (MQ=255)
  gTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAggg                                 >  1:11211509/1‑35 (MQ=255)
  gTTGCCAGGTCCGACCGGAGAAGGCTGCGGCAggg                                 <  1:18842897/35‑1 (MQ=255)
  ccagcaccagttttccataaactgactCGGCAggg                                 <  1:10632633‑M1/8‑1 (MQ=255)
  cagttcgcgataactttcatactgctgtggcgggg                                 <  1:13914300‑M1/3‑1 (MQ=255)
  cagttcgcgataactttcatactgctgtggcgggg                                 <  1:17416080‑M1/3‑1 (MQ=255)
   ttGCCAGGTCCGACCGGAGCAGGCTGCGGCAgggg                                <  1:6725099/35‑1 (MQ=255)
   ttGCCAGGTCCGACCGGAGCAGGCTGCGGCAgggg                                >  1:13093582/1‑35 (MQ=255)
   cagcaccagttttccataaactgactCGGCAgggg                                <  1:4121101‑M1/9‑1 (MQ=255)
   agttcgcgataactttcatactgctgtggcggggg                                <  1:13597784‑M1/4‑1 (MQ=255)
   agttcgcgataactttcatactgctgtggcggggg                                <  1:15426573‑M1/4‑1 (MQ=255)
    tGCCAGGTCCGACCGGAGCAGGCTGCGGCAggggg                               >  1:16737825/1‑35 (MQ=255)
    tGCCAGGTCCGACCGGAGCAGGCTGCGGCAggggg                               <  1:6363807/35‑1 (MQ=255)
    tGCCAGGTCCGACCGGAGCAGGCTGCGGCAcgggg                               >  1:4811569/1‑35 (MQ=255)
    agcaccagttttccataaactgactCGGCAggggg                               <  1:8467093‑M1/10‑1 (MQ=255)
    agcaccagttttccataaactgactCGGCAggggg                               <  1:19629439‑M1/10‑1 (MQ=255)
     ttcgcgataactttcatactgctgtggcggggggg                              <  1:14931248‑M1/6‑1 (MQ=255)
     ttcgcgataactttcatactgctgtggcgggaggg                              <  1:7637761‑M1/6‑1 (MQ=255)
     gcaccagttttccataaactgactCGGCAgggggg                              <  1:754006‑M1/11‑1 (MQ=255)
     gCCAGGTCCGACCGGAGCAGGCTGCGGCAgggggg                              <  1:13281633/35‑1 (MQ=255)
      tcgcgataactttcatactgctgtggcggggggga                             <  1:4298799‑M1/7‑2 (MQ=255)
      ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg                             >  1:8298771/1‑35 (MQ=255)
      ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg                             >  1:757472/1‑35 (MQ=255)
      ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg                             <  1:16468888/35‑1 (MQ=255)
      ccAGGTCCGACCGGAGCAGGCTGCGGCAggggggg                             <  1:15582865/35‑1 (MQ=255)
      caccagttttccataaactgactCGgcaggggtgg                             <  1:14999080‑M1/12‑4 (MQ=255)
      caccagttttccataaactgactCGGCAggggggg                             <  1:3555004‑M1/12‑1 (MQ=255)
      caccagttttccataaactgactCGGCAggggggg                             <  1:11749451‑M1/12‑1 (MQ=255)
       cgcgataactttcatactgctgtggcgGGGGGGgc                            <  1:11827569‑M1/8‑1 (MQ=255)
       cAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgc                            <  1:9004347/35‑1 (MQ=255)
       accagttttccataaactgactCGGCagggggggg                            <  1:15511621‑M1/13‑2 (MQ=255)
       accagttttccataaactgactCGGCAGGGGGGgc                            <  1:17329054‑M1/13‑1 (MQ=255)
        ccagttttccataaactgactCGgcaggggggcgg                           <  1:13828613‑M1/14‑4 (MQ=255)
        ccagttttccataaactgactCGGCAGGGGGGgcg                           <  1:8172754‑M1/14‑1 (MQ=255)
        aGGTCCGACCGGAGCAGGCTGCGGCCggggggggg                           >  1:3236639/1‑33 (MQ=37)
        aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcg                           >  1:13964604/1‑35 (MQ=255)
        aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcg                           <  1:16851534/35‑1 (MQ=255)
        aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcg                           >  1:5485782/1‑35 (MQ=255)
        aGGTCCGACCCGAGCAGGCTGCGGCAGGGGGGgcg                           >  1:14697133/1‑35 (MQ=255)
         ggTCCGACCGGAGCAGGCTGCTGCAGGGGGGgcgc                          >  1:7161058/1‑35 (MQ=255)
         ggTCCGACCGGAGCAGGCTGCGGCAGGGGGGgggc                          >  1:14932605/1‑35 (MQ=255)
         cgataactttcatactgctgtggcgGGGGgggctc                          <  1:19680195‑M1/10‑3 (MQ=255)
         cagttttccataaactgactCGGCAGGGGGggcgg                          <  1:11568642‑M1/15‑2 (MQ=255)
         cagttttccataaactgactCGGCAGGGGGGgcgc                          <  1:7817516‑M1/15‑1 (MQ=255)
          gataactttcatactgctgtggcgGGGggggccct                         <  1:8476097‑M1/11‑4 (MQ=255)
          gataactttcatactgctgtggcgGGGGGGGCGCt                         <  1:3508480‑M1/11‑1 (MQ=255)
          gTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCt                         <  1:8089477/35‑1 (MQ=255)
          gTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCt                         <  1:9285842/35‑1 (MQ=255)
           tCCGACCGGAGCAGGCTGCGGCAGGGGGGgggcct                        >  1:11549064/1‑33 (MQ=37)
           tCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCtt                        <  1:14264973/35‑1 (MQ=255)
            ttttccataaactgactCGGCAGGGggggcgcgtc                       <  1:1623841‑M1/18‑4 (MQ=255)
            ttttccataaactgactCGGCAGGGGGGGCgctcc                       <  1:13773806‑M1/18‑3 (MQ=255)
            taactttcatactgctgtggcgGGGGGGGCGCttt                       <  1:8404970‑M1/13‑1 (MQ=255)
            ccGACCGGAGCAGGCTGCGGCAGGGGGGGGGCttt                       >  1:16279467/1‑35 (MQ=255)
             cGACCGGAGCAGGCTGCGGCAGGGGGGGGGCtttt                      >  1:8598377/1‑35 (MQ=255)
             cGACCGGAGCAGGCTGCGGCAGGGGGGGGGCcttt                      >  1:4693626/1‑35 (MQ=37)
              gACCGGAGCAGGCTGCGGCAGGGGGGGGGCttttt                     >  1:13302920/1‑34 (MQ=255)
              gACCGGAGCAGGCTGCGGCAGGGGGGGGGCgtttt                     >  1:6356249/1‑34 (MQ=37)
              gACCGGAGCAGGCTGCGGCAGGGGGGGGGCgtttt                     >  1:9821861/1‑34 (MQ=37)
               aCCGGAGCAGGCTGCGGCAGGGGGGGGGCcttttt                    >  1:12804149/1‑33 (MQ=25)
               aCCGGAGCAGGCTGCGGCAGGGGGGGCGCTTTTcc                    <  1:37706/35‑1 (MQ=255)
               aCCGGAGCAGGCTGAGGCAGGGGGGGCGCTTTTcc                    <  1:3621076/35‑1 (MQ=255)
                ccGGAGCAGGCTGCGGCAGGGGGGGGGCctttttt                   >  1:1699499/1‑32 (MQ=25)
                   gAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTc                <  1:4466059/35‑1 (MQ=255)
                   gAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTc                <  1:19368781/35‑1 (MQ=255)
                   gAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTc                <  1:442721/35‑1 (MQ=255)
                    aggaGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCa               <  1:17838833/32‑1 (MQ=255)
                    aGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCa               <  1:4510337/35‑1 (MQ=255)
                    aGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCa               <  1:13279778/35‑1 (MQ=255)
                     gCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCAc              <  1:2827788/35‑1 (MQ=255)
                       aGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCAccc            <  1:4926932/35‑1 (MQ=255)
                        ggCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCt           <  1:14436043/35‑1 (MQ=255)
                        ggCTGCGGCAGGGGGGGCGCTTTTCACCTCACCCt           <  1:9569212/35‑1 (MQ=255)
                         gCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTa          <  1:3315506/35‑1 (MQ=255)
                         gCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTa          <  1:2363207/35‑1 (MQ=255)
                          cTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTaa         <  1:15810175/35‑1 (MQ=255)
                            gCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAAcc       <  1:15801754/35‑1 (MQ=255)
                            gCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAAcc       <  1:8836544/35‑1 (MQ=255)
                             CGGCAGGGGGGGCGCTTTTCCCCTCACCCTAAccc      >  1:6186598‑M1/1‑35 (MQ=255)
                             CGGCAGGGGGGGCGCTTTTCCCATCACCCTAAccc      >  1:4555014‑M1/1‑35 (MQ=255)
                              GGCAGGGGGGGCGCTTTTCCCCTCACCCTAACCct     >  1:12689574‑M1/1‑35 (MQ=255)
                              GGCAGGGGGGGCGCTTTTCCCCTCACCCTAACCct     >  1:10753721‑M1/1‑35 (MQ=255)
                               GCAGGGGGGGCGCTTTTCCCCTCACCCTAACCctc    >  1:16598585‑M1/1‑35 (MQ=255)
                               GCAGGGGGGGCGCTTTTCCCCTCACCCTAACCctc    >  1:17577495‑M1/1‑35 (MQ=255)
                               GCAGGGGGGGCGCTTTTCCCCTCACCCTAACCctc    >  1:5155066‑M1/1‑35 (MQ=255)
                                CAGGGGGGGCGCTTTTCCCCTCACCCTAACCctct   >  1:7322736‑M1/1‑35 (MQ=255)
                                 AGGGGGGGCGCTTTTCCCCTCACCCTAACCCtctc  >  1:17310176‑M1/1‑35 (MQ=255)
                                 AGGGGGGGCGCTTTTCCCCTCACCCTAACCCtctc  >  1:16149026‑M1/1‑35 (MQ=255)
                                 AGGGGGGGCGCTTTTCCCCTCACCCTAACCCtctc  >  1:10857580‑M1/1‑35 (MQ=255)
                                  |                                 
TAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGGCGCTTTTCCCCTCACCCTAACCCTCTC  >  REL606/1349525‑1349592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.