New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 180751 = | 70 (0.680) | 8 (0.080) | 5/46 | NT | 13.4% | coding (554/801 nt) | yadT | vitamin B12‑transporter protein BtuF |
? | REL606 | 3966540 = | 36 (0.370) | intergenic (‑56/‑97) | ECB_03694/ECB_03695 | conserved hypothetical protein/Magnesium and cobalt transport protein corA |
TCGATTCAAAACCAGGTACTCGAAGTTTGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/180785‑180751 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGTAAAAAAATTTTAAA > REL606/3966540‑3966556 TCGATTCAAAACCAGGTACTCGAAGTTTGTGGCGG > 1:10146962/1‑35 TCGATTCAAAACCAGGTACTCGAAGTTTGTGGCGG < 1:4350237/35‑1 TCGATTCAAAACCAGGTACTCGAAGTTTGTGGCGG > 1:19729211/1‑35 TCGATTCAAAACCAGGTACTCGAAGTTTGTGGCGG > 1:1763758/1‑35 TCGATTCAAAACCAGGTACTCGAAGTTTGTGGCGG < 1:14701398/35‑1 ctATTCAAAACCAGGTACTCGAAGTTTGTGGCGGG > 1:625100/3‑35 CGATTCAAAACCAGGTACTCGAAGTTTGTGGCGGG > 1:8127048/1‑35 CGATTCAAAACCAGGTACTCGAAGTTTGTGGCGGG > 1:1610962/1‑35 CGATTCAAAACCAGGTACTCGAAGTTTGTGGCGGG > 1:14235025/1‑35 CGATTCAAAACCAGGTACTCGAAGTTTGTGGCGGG > 1:10042545/1‑35 CGATTCAAAACCAGGTACTCGAAGTTTGTGGCGGG > 1:12801506/1‑35 CGATTCAAAACCAGGTACTCGAAGTTTGTGGCGGG > 1:12748157/1‑35 GATTCAAAACCAGGTACTCGAAGTTTGTGGCGGGG > 1:935268/1‑35 GATTCAAAACCAGGTACTCGAAGTTTGTGGCGGGG > 1:15895298/1‑35 GATTCAAAACCAGGTACTCGAAGTTTGTGGCGGGG > 1:7753169/1‑35 ATTCAAAACCATGTACTCGAAGTTTGTGGCGGGGg > 1:14300648/1‑34 TTCAAAACCAGGTACTCGAAGTTTGTGGCGGGGga > 1:4015929/1‑33 TCAAAACCAGGTACTCGAAGTTTGTGGCGGGGAAA > 1:15257790/1‑35 TCAAAACCAGGTACTCGAAGTTTGTGGCGGGGAAA > 1:5556191/1‑35 TCAAAACCAGGTACTCGAAGTTTGTGGCGGGGAAA > 1:12288653/1‑35 CAAAACCAGGTACTCGAAGTTTGTGGCGGGGGAAA > 1:15545006/1‑35 CAAAACCAGGTACTCGAAGTTTGTGGCGGGGGAAA > 1:13617395/1‑35 AAAACCAGGTACTCGAAGTTTGTGGCGGGGGAAAA > 1:13554901/1‑35 AACCAGGTACTCGAAGTTTGTGGCGGGGGAAAAAA > 1:3230551/1‑35 AACCAGGTACTCGAAGTTTGTGGCGGGGGAAAAAA > 1:17666541/1‑35 ACCAGGTACTCGAAGTTTGTGGCGGGGGAAAAAAc > 1:13777568/1‑34 TACTCGAAGTTTGTGGCGGGGGAAAAAAATTTTAA > 1:8470961/1‑35 ACTCGAAGTTTGTGGCGGGGGAAAAAAATTTTAAA > 1:9701890/1‑35 TCGATTCAAAACCAGGTACTCGAAGTTTGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/180785‑180751 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGTAAAAAAATTTTAAA > REL606/3966540‑3966556 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |