New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1286707 =97 (0.940)9 (0.110) 4/38 NT 10.5% intergenic (+31/‑152) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein
?REL606 = 1424360 NA (NA)coding (192/294 nt) ECB_01344 conserved hypothetical protein

CATAAAAAAACCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1286723‑1286707
‑‑‑‑‑‑‑‑‑‑‑‑ccgccCCACCACGGCATATTCATTCGCTTGCCATGCCCG  <  REL606/1424360‑1424327
                                                   
CATAAACAAACCCCGCCCCACCACGGCATATTCAT                  <  1:7856906/35‑1
   AAAAAACCCCCGCCCCACCACGGCATATTCATTCG               <  1:16944427/35‑1
   AAAAAAACCCCGCCCCACCACGGCATATTCATTCG               <  1:16936278/35‑1
   AAAAAAACCCCGCCCCACCACGGCATATTCATTCG               <  1:4422187/35‑1
    gAAAAACCCCGCCCCACCACGGCATATTCATTCGC              <  1:1723316/34‑1
    cAAAACCCCCGCCCCACCACGGCATATTCATTCGC              <  1:19147040/34‑1
    AAAAACCCCCGCCCCACCACGGCATATTCATTCGC              <  1:46011/35‑1
     AAAACCCCCGCCCCACCACGGCATATTCATTCGCc             <  1:8935846/35‑2
     AAAAACCCCGCGCCACCACGGCATATTCATTCGCT             <  1:15657331/35‑1
      cAAACCCCGCCCCACCACGGCATATTCATTCGCTT            <  1:10717920/34‑1
      cAAACCCAGCCCCACCACGGCATATTCATTCGCTT            <  1:8434527/34‑1
      acAACCCCGCCCCACCACGGCATATTCATTCGCTT            <  1:2408897/33‑1
       cccCCCCGCCCCACCACGGCATATTCATTCGCTTG           <  1:567106/32‑1
       cccCCCCGCCCCACCACGGCATATTCATTCGCTTG           <  1:7171694/32‑1
       cacCCCCGCCCCACCACGGCATATTCATTCGCTTG           <  1:16519845/32‑1
       aacCCCCGCCCCACCACGGCATATTCATTCGCTTG           <  1:8449417/32‑1
       AAACCCCGCCCCACCACGGCATATTCATTCGCTTG           <  1:5323823/35‑1
        ccCCCCGCCCCACCACGGCATATTCATTCGCTTGC          <  1:7492014/33‑1
        cACCCCGCCCCACCACGGCATATTCATTCGCTTGC          <  1:3969776/34‑1
        AACCCCGCCCCACCACGGCATATTCATTCGCTTGC          <  1:14274986/35‑1
         cCCCCGCCCCACCACGGCATATTCATTCGCTTGCC         <  1:2300674/34‑1
         cCCCCGCCACACCACGGCATATTCATTCGCTTGCC         <  1:15406209/34‑1
         ACCCCGCCCCACCACGGCATATTCATTCGCTTGCC         <  1:13796816/35‑1
          CCCCGCCCCACCACGGCATATTCATTCGCTTGCCA        <  1:6966333/35‑1
          CCCCGCCCCACCACGGCATATTCATTCGCTTGCCA        <  1:15152729/35‑1
          CCCCGCCCCACCACGGCATATTCATTCGCTTGCCA        <  1:13391104/35‑1
          CCCCGCCCCACCACGGCATATTCATTCGCTTGCCA        <  1:8602864/35‑1
          CCCCGCCCCACCACGGCATATTCATTCGCTTGCCA        <  1:13277681/35‑1
          CCCCGCCCCACCACGGCATATTCATTCGCTTGCCA        <  1:10394868/35‑1
           CCCGCCCCACCACGGCATATTCATTCGCTTGCCAT       <  1:11601082/35‑1
           CCCGCCCCACCACGGCATATTCATTCGCTTGCCAT       <  1:18527477/35‑1
            CCGCCCCCCCACGGCATATTCATTCGCTTGCCATG      <  1:4144352/35‑1
            CCGCCCCCCCACGGCATATTCATTCGCTTGCCATG      <  1:5710931/35‑1
            CCGCCCCACCACGGCATATTCATTCGCTTGCCATG      <  1:5532904/35‑1
            CCGCCCCACCACGGCATATTCATTCGCTTGCCATG      >  1:4891461/1‑35
            CCGCCCCACCACGGCATATTCATTCGCTTGCCATG      >  1:4881117/1‑35
            CCGCCCCACCACGGCATATTCATTCGCTTGCCATG      >  1:14276895/1‑35
            CCGCCCCACCACGGCATATTCATTCGCTTGCCATG      <  1:1341671/35‑1
             ccCCCCACCACGGCATATTCATTCGCTTGCCATGC     <  1:20097113/33‑1
             ccCCCCACCACGGCATATTCATTCGCTTGCCATGC     <  1:5377510/33‑1
             CGCCCCATCACGGCATATTCATTCGCTTGCCATGC     <  1:1477044/35‑1
             CGCCCCACCACTGCATATTCATTCGCTTGCCATGC     >  1:3623268/1‑35
             CGCCCCACCACGGCATTTTCATTCGCTTGCCATGC     >  1:11125956/1‑35
             CGCCCCACCACGGCATATTCATTCGCTTGCCATGC     <  1:5413324/35‑1
             CGCCCCACCACGGCATATTCATTCGCTTGCCATGC     <  1:4855331/35‑1
             CGCCCCACCACGGCATATTCATTCGCTTGCCATGC     <  1:9304104/35‑1
             CGCCCCACCACGGCATATTCATTCGCTTGCCATGC     >  1:10393057/1‑35
             CGCCCCACCACGGCATATTCATTCGCTTGCCATGC     <  1:13694134/35‑1
             CGCCCCACCACGGCATATTCATTCGCTTGCCATGC     >  1:13861330/1‑35
             CGCCCCACCACGGCATATTCATTCGCTTGCCATGC     >  1:16026648/1‑35
              cCCCCACCACGGCATATTCATTCGCTTGCCATGCC    <  1:15679843/34‑1
              GCCCCCCCACGGCATATTCATTCGCTTGCCATGCC    <  1:20061223/35‑1
              GCCCCCCCACGGCATATTCATTCGCTTGCCATGCC    <  1:2609840/35‑1
              GCCCCACCACGGCATATTCATTCGCTTGCCATGCC    >  1:10402864/1‑35
              GCCCCACCACGGCATATTCATTCGCTTGCCATGCC    >  1:8611063/1‑35
              GCCCCACCACGGCATATTCATTCGCTTGCCATGCC    <  1:12140398/35‑1
              GCCCCACCACGGCATATTCATTCGCTTGCCATGCC    >  1:8038392/1‑35
               CCCCCCCACGGCATATTCATTCGCTTGCCATGCCC   <  1:5468912/35‑1
               CCCCCCCACGGCATATTCATTCGCTTGCCATGCCC   <  1:11739491/35‑1
               CCCCACCACGGCATATTCATTCGCTTGCCATGCac   >  1:10905641/1‑33
               CCCCACCACGGCATATTCATTCGCTTGCCATGCCC   >  1:5727569/1‑35
               CCCCACCACGGCATATTCATTCGCTTGCCATGCCC   >  1:278628/1‑35
               CCCCACCACGGCATATTCATTCGCTTGCCATGCCC   <  1:3161972/35‑1
               CCCCACCACGGCATATTCATTCGCTTGCCATGCCC   >  1:1072083/1‑35
               CCCCACAACGGCATATTCATTCGCTTGCCATGCCC   <  1:1050444/35‑1
                CCCACCACGGCATATTCATTCGCTTGCCATGCGCG  >  1:6362922/1‑35
                CCCACCACGGCATATTCATTCGCTTGCCATGCCCG  <  1:15774873/35‑1
                CCCACCACGGCATATTCATTCGCTTGCCATGCCCG  <  1:20226855/35‑1
                CCCACCACGGCATATTCATTCGCTTGCCATGCCCG  <  1:4393926/35‑1
                                                   
CATAAAAAAACCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1286723‑1286707
‑‑‑‑‑‑‑‑‑‑‑‑ccgccCCACCACGGCATATTCATTCGCTTGCCATGCCCG  <  REL606/1424360‑1424327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.