New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2064682 =77 (0.750)9 (0.110) 3/38 NT 10.8% coding (595/1218 nt) wcaC predicted glycosyl transferase
?REL606 = 3433062 88 (1.080)pseudogene (399/621 nt) yhfS putative enzyme; b3376_1

Only 100 of 205 total aligned reads displayed.

CCGTACAGGCTATTGAAAGCGTCAGCCACATGCTGGCTGGGGGAAATAAACTGACAGCCCAGCGCCAGC  >  REL606/2064648‑2064716
                                  |                                  
gctgaaggaatcgcttcttcaaatttctccagtTg                                    >  1:18460042‑M1/34‑35 (MQ=255)
gctgaaggaatcgcttcttcaaatttctccagtTg                                    >  1:20036637‑M1/34‑35 (MQ=255)
gctgaaggaatcgcttcttcaaatttctccagtTg                                    <  1:5301391‑M1/2‑1 (MQ=255)
gctgaaggaatcgcttcttcaaatttctccagtTg                                    <  1:4274464‑M1/2‑1 (MQ=255)
gctgaaggaatcgcttcttcaaatttctccagtTg                                    <  1:12098640‑M1/2‑1 (MQ=255)
ccGTACAGGCTATTGAAAGCGTCAGCCACATgctg                                    <  1:20471612/35‑1 (MQ=255)
ccGTACAGGCTATTGAAAGCGTCAGCCACATgctg                                    <  1:12200092/35‑1 (MQ=255)
 ttttgcgcctcttccagcactctggcggcaatcgg                                   >  1:6136413‑M1/34‑35 (MQ=255)
 ctgaaggaatcgcttcttcaaatttctccagtTgg                                   <  1:1424855‑M1/3‑1 (MQ=255)
 ctgaaggaatcgcttcttcaaatttctccagtTgg                                   >  1:17170987‑M1/33‑35 (MQ=255)
  tgaaggaatcgcttcttcaaatttctccagtTGGc                                  <  1:17582593‑M1/4‑1 (MQ=255)
  tgaaggaatcgcttcttcaaatttctccagtTGGc                                  <  1:2694775‑M1/4‑1 (MQ=255)
  tgaaggaatcgcttcttcaaatttctccagtTGGc                                  >  1:11788339‑M1/32‑35 (MQ=255)
  tgaaggaatcgcttcttcaaatttctccagtTGGc                                  <  1:10290308‑M1/4‑1 (MQ=255)
  tgaaggaatcgcttcttcaaatttctccagtCGGc                                  <  1:14114589‑M1/4‑1 (MQ=255)
   ttgcgcctcttccagcactctggcggcaatcGGCt                                 <  1:6316506‑M1/4‑1 (MQ=255)
   ttgcgcctcttccagcactctggcggcaatcGGCt                                 >  1:20265990‑M1/32‑35 (MQ=255)
   gaaggaatcgcttcttcaaatttctccagtTGGCt                                 <  1:1314631‑M1/5‑1 (MQ=255)
   gaaggaatcgcttcttcaaatttctccagtTGGCt                                 >  1:8866890‑M1/31‑35 (MQ=255)
    tgcgcctcttccagcactctggcggcaatcGGCTg                                >  1:7506968‑M1/31‑35 (MQ=255)
    aaggaatcgcttcttcaaatttctccagtTGGCTg                                <  1:13954966‑M1/6‑1 (MQ=255)
    aaggaatcgcttcttcaaatttctccagtTGGCTg                                >  1:16208999‑M1/30‑35 (MQ=255)
    aaggaatcgcttcttcaaatttctccagtTGGCTg                                <  1:18549264‑M1/6‑1 (MQ=255)
    aaggaatcgcttcttcaaatttctccagtTGGCTg                                <  1:19662071‑M1/6‑1 (MQ=255)
    aaggaatcgcttcttcaaatttctccagtTGGCTg                                >  1:12866114‑M1/30‑35 (MQ=255)
    aaggaatcgcttcttcaaatttctccagtTGGCTg                                <  1:3621379‑M1/6‑1 (MQ=255)
    aCAGGCTATTGAAAGCGTCAGCCACATgctggctg                                <  1:4917579/35‑1 (MQ=255)
      ggaatcgcttcttcaaatttctccagtTGGCTggg                              <  1:348107‑M1/8‑1 (MQ=255)
      cgcctcttccagcactctggcggcaatcGGCTggg                              <  1:9357627‑M1/7‑1 (MQ=255)
      cgcctcttccagcactctggcggcaatcGGCTggg                              <  1:14221211‑M1/7‑1 (MQ=255)
      aGGCTATTGAAAGCGTCAGCCACATGCTGGGTggg                              >  1:18159379/1‑35 (MQ=255)
      aGGCTATTGAAAGCGTCAGCCACATGCTGGCTggg                              <  1:10022048/35‑1 (MQ=255)
      aGGCTATTGAAAGCGTCAGCCACATGCTGGCTggg                              <  1:5467806/35‑1 (MQ=255)
       gcctcttccagcactctggcggcaatcGGctggtt                             <  1:7886900‑M1/8‑3 (MQ=255)
       gaatcgcttcttcaaatttctccagtTGGCTgggg                             <  1:20261244‑M1/9‑1 (MQ=255)
        gCTATTGAAAGCGTCATCCACATGCTGGCTggggg                            >  1:15856300/1‑35 (MQ=255)
        gCTATTGAAAGCGTCAGCCACATGCTGGCTggggg                            >  1:616159/1‑35 (MQ=255)
        gCTATTGAAAGCGTCAGCCACATGCTGGCTggggg                            <  1:211329/35‑1 (MQ=255)
        gCTATTGAAAGCGTCAGCCACATGCTGGCTggggg                            >  1:10381999/1‑35 (MQ=255)
        cctcttccagcactctggcggcaatcGgctggagg                            <  1:7290745‑M1/9‑4 (MQ=255)
        aatcgcttcttcaaatttctccagtTGGCTggggg                            <  1:8125240‑M1/10‑1 (MQ=255)
        aatcgcttcttcaaatttctccagtTGGCTggggg                            <  1:17100819‑M1/10‑1 (MQ=255)
         ctcttccagcactctggcggcaatcGGCTGGTGGa                           <  1:4494686‑M1/10‑1 (MQ=255)
         cTATTGAAAGCGTCAGCCACATGCTGGCTgggggg                           >  1:2372539/1‑34 (MQ=255)
         cTATTGAAAGCGTCAGCCACATGCTGGCTgggggg                           >  1:11365857/1‑34 (MQ=255)
         cTATTGAAAGCGTCAGCCACATGCTGGCTGGGGGa                           <  1:13028305/35‑1 (MQ=255)
         atcgcttcttcaaatttctccagtTGGCTGGGGGa                           <  1:11160266‑M1/11‑1 (MQ=255)
         atcgcttcttcaaatttctccagtTGGCTGGGGGa                           <  1:5096676‑M1/11‑1 (MQ=255)
          tcttccagcactctggcggcaatcGGCTGGGGGaa                          <  1:15953539‑M1/11‑1 (MQ=255)
           cgcttcttcaaatttctccagtTGgctgggggcaa                         <  1:15765436‑M1/13‑4 (MQ=255)
           aTTGAAAGCGTCAGCCACATGCTGGCTGGGGGgaa                         >  1:7635898/1‑35 (MQ=255)
           aTTGAAAGCGTCAGCCACATGCTGGCTGGGGGaaa                         <  1:1929581/35‑1 (MQ=255)
            ttccagctctctggcggcaatcGGCTGGGGgaaac                        <  1:20059548‑M1/13‑2 (MQ=255)
            ttccagcactctggctgcaatcGGCTGGGGGAAAt                        <  1:3248176‑M1/13‑1 (MQ=255)
            ttccagcactctggcggcaatcGGCTGAGGGAAAt                        <  1:4639022‑M1/13‑1 (MQ=255)
            ttGAAAGCGTCAGCCACATGCTGGCTGGGGGGAAt                        >  1:13796291/1‑35 (MQ=255)
             tccagcactctggcggcaatcGGCTGGGGGAAATa                       <  1:8336365‑M1/14‑1 (MQ=255)
             tccagcactctggcggcaatcGGCTGGGGAAAatc                       <  1:10470975‑M1/14‑2 (MQ=255)
             ggAAAGCGTCAGCCACATGCTGGCTGGGGGAAATa                       <  1:20344643/34‑1 (MQ=255)
              ttcttcaaatttctccagtTGGCTGGGGGAaattt                      <  1:16480663‑M1/16‑3 (MQ=255)
              gAAAGCGTCAGCCACATGCTGGCTGGGGGGAATaa                      >  1:13727220/1‑35 (MQ=255)
              gAAAGCGTCAGCCACATGCTGGCTGGGGGGAATaa                      >  1:5795912/1‑35 (MQ=255)
              gAAAGCGTCAGCCACATGCTGGCTGGGGGAAATaa                      <  1:11606714/35‑1 (MQ=255)
              ccagcactctggcggcaatcGGCTGGGGGAaatcg                      <  1:7681432‑M1/15‑3 (MQ=255)
               aaaGCGTCAGCCACATGCTGGCTGGGGGAAATaaa                     <  1:4724371/35‑1 (MQ=255)
               aaaGCGTCAGCCACATGCTGGCTGGGGGAAATaaa                     <  1:19846920/35‑1 (MQ=255)
                aaGCGTCAGCCACATGCTGGCTGGGGGAAATaaaa                    >  1:2792201/1‑34 (MQ=255)
                aaGCGTCAGCCACATGCTGGCTGGGGGAAATAAAc                    <  1:20123391/35‑1 (MQ=255)
                 aGCGTCAGCCACATGCTGGCTGGGGGAAATAAACt                   <  1:12922575/35‑1 (MQ=255)
                 aGCGTCAGCCACATGCTGGCTGGGGGAAATAAACt                   <  1:5688927/35‑1 (MQ=255)
                  gCGTCAGCCACATGCTGGCTGGGGGAAATAAACTg                  <  1:13703196/35‑1 (MQ=255)
                  gCGTCAGCCACATGCTGGCTGGGGGAAATAAACTg                  <  1:482363/35‑1 (MQ=255)
                  gCGTCAGCCACATGCTGGCTGGGGGAAATAAACTg                  <  1:9012350/35‑1 (MQ=255)
                  gCGCCAGCCACATGCTGGCTGGGGGAAATAAACTg                  <  1:18636109/35‑1 (MQ=255)
                   tgTCAGCCACATGCTGGCTGGGGGAAATAAACTGa                 <  1:19472719/34‑1 (MQ=255)
                   cctCAGCCACATGCTGGCTGGGGGAAATAAACTGa                 <  1:5410758/33‑1 (MQ=255)
                   cGTCAGCCACATGCTGGCTGGGGGAAATAAACTGa                 <  1:11044027/35‑1 (MQ=255)
                    gTCAGCCACATGCTGGCTGGGGGAAATAAACTGAc                <  1:8786198/35‑1 (MQ=255)
                     tCAGCCACATGCTGGCTGGGGGAAATAAACTGACa               <  1:18419486/35‑1 (MQ=255)
                     ccAGCCACATGCTGGCTGGGGGAAATAAACTGACa               <  1:14674660/34‑1 (MQ=255)
                     ccAGCCACATGCTGGCTGGGGGAAATAAACTGACa               <  1:10773866/34‑1 (MQ=255)
                      cAGCCACATGCTGGCTGGGGGAAATAAACTGACAg              >  1:20377703/1‑35 (MQ=255)
                        gCCACATGCTTGCTGGGGGACATAAACTGACATcc            >  1:10163362/1‑35 (MQ=25)
                        gCCACATGCTGGCTGGGGGAAATAAACTGACAGcc            >  1:14413667/1‑35 (MQ=255)
                        gCCACATGCTGGCTGGGGGAAATAAACTGACAGcc            >  1:19544001/1‑35 (MQ=255)
                          cacaTGCTGGCTGGGGGAAATAAACTGACAGCCCa          <  1:10054346/35‑1 (MQ=255)
                          cacaTGCTGGCTGGGGGAAATAAACTGACAGCCCa          <  1:15196868/35‑1 (MQ=255)
                           acaTGCTGGCTGGGGGAAATAAACTGACAGCCCAg         >  1:15044881/1‑35 (MQ=255)
                           acaTGCTGGCTGGGGGAAATAAACTGACAGCCCAg         <  1:19590400/35‑1 (MQ=255)
                           acaTGCTGGCTGGGGGAAATAAACTGACAGCCCAg         <  1:11875594/35‑1 (MQ=255)
                           acaTGCTGGCTGGGGGAAATAAACTGACAGCCCAg         >  1:2863694/1‑35 (MQ=255)
                            caTGCTGGCTGGGGGAAATAAACTGACAGCCCAgc        >  1:12306273/1‑35 (MQ=255)
                            caTGCTGGCTGGGGGAAATAAACTGACAGCCCAgc        <  1:4713936/35‑1 (MQ=255)
                             aTGCTGGCGGGGGGAAATAAACTGACAGCCCAgcg       <  1:6608766/35‑1 (MQ=255)
                              tGCTGGCTGGGGGAAATAAACTGACAGCCCAgcgc      >  1:7850671/1‑35 (MQ=255)
                              tGCTGGCTGGGGGAAATAAACTGACAGCCCAgcgc      >  1:15681260/1‑35 (MQ=255)
                              tGCTGGCTGGGGGAAATAAACTGACAGCCCAgcgc      <  1:4111240/35‑1 (MQ=255)
                                ctggctggGGGAAATAAACTGACAGCCCAGCGCCa    >  1:5934652/1‑35 (MQ=255)
                                 TGGCTGGGGGAAATAAACTGACAGCCCAGCGCCAg   >  1:13531743‑M1/1‑35 (MQ=255)
                                 TGGCTGGGGGAAATAAACTGACAGCCCAGCGCCAg   <  1:8726165‑M1/35‑1 (MQ=255)
                                  |                                  
CCGTACAGGCTATTGAAAGCGTCAGCCACATGCTGGCTGGGGGAAATAAACTGACAGCCCAGCGCCAGC  >  REL606/2064648‑2064716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.