New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3182813 =111 (1.080)7 (0.110) 3/30 NT 10.7% coding (97/405 nt) yqjE conserved inner membrane protein
?REL606 4217451 = 48 (0.750)coding (886/2097 nt) yjbH predicted porin

Only 100 of 209 total aligned reads displayed.

TGTTTCCATCATGGTTGAAATGGTGGAAACACGTCTGCGGCTGGCGGTGGTTGAGCTGGAAGAGGAAAA  >  REL606/3182779‑3182847
                                  |                                  
tGTTTCCATCATGGTTGAAATGGTGGAAACACGTc                                    >  1:1633572/1‑35 (MQ=255)
tGTTTCCATCATGGTTGAAATGGTGGAAACACGTc                                    >  1:15378945/1‑35 (MQ=255)
tGTTTCCATCATGGTTGAAATGGTGGAAACACGTc                                    >  1:6743011/1‑35 (MQ=255)
tGTTTCCATCATGGTTGAAATGGTGGAAACACGTc                                    <  1:13355024/35‑1 (MQ=255)
tGTTTCCATCATGGTTGAAATGGTGGAAACACGTc                                    <  1:3262216/35‑1 (MQ=255)
gattcgccaccaccgaatgctgcaaaatggcatcc                                    <  1:16789438‑M1/1‑1 (MQ=255)
 gTTTCCATCATGGTTGAAATGGTGGAAACACGTCt                                   >  1:10191286/1‑35 (MQ=255)
 gTTTCCATCATGGTTGAAATGGTGGAAACACGTCt                                   >  1:9168934/1‑35 (MQ=255)
 gTTTCCATCATGGTTGAAATGGTGGAAACACGTCt                                   >  1:647804/1‑35 (MQ=255)
 gTTTCCATCATGGTTGAAATGGTGGAAACACGTCt                                   <  1:14484891/35‑1 (MQ=255)
 gTTTCCATCATGGTTGAAATGGTGGAAACACGCCt                                   >  1:15933956/1‑35 (MQ=255)
 attcgccaccaccgaatgctgcaaaatggcatcCt                                   <  1:19647158‑M1/2‑1 (MQ=255)
 attcgccaccaccgaatgctgcaaaatggcatcCt                                   <  1:14281202‑M1/2‑1 (MQ=255)
  tttCCATCATGGTTGAAATGGTGTAAACACGTCTg                                  >  1:14168477/1‑35 (MQ=255)
  tttCCATCATGGTTGAAATGGTGGAAACACGTCTg                                  <  1:4181928/35‑1 (MQ=255)
  ttcgccaccaccgaatgctgcaaaatggcatcCTg                                  <  1:13978718‑M1/3‑1 (MQ=255)
   ttCCATCATGGTTGAAATGGTGGAAACACGTCTGc                                 <  1:18503775/35‑1 (MQ=255)
   ttCCATCATGGTTGAAATGGTGGAAACACGTCTGc                                 >  1:19915363/1‑35 (MQ=255)
   ttCCATCATGGTTGAAATGGTGGAAACACGTCTGc                                 >  1:20009606/1‑35 (MQ=255)
    tCCATCATGGTTGAAATGGTGGAAACACGTCTGCg                                <  1:12828943/35‑1 (MQ=255)
    cgcccccaccgaatgctgcaaaatggcatcCTGCg                                >  1:5110685‑M1/31‑35 (MQ=255)
    cgccaccaccgaatgctgcaaaatggcatcCTGCg                                <  1:1709604‑M1/5‑1 (MQ=255)
    cgccaccaccgaatgctgcaaaatggcatcCTGCg                                <  1:12689657‑M1/5‑1 (MQ=255)
     gcccccaccgaatgctgcaaaatggcatcCTGcgn                               >  1:11618529‑M1/30‑34 (MQ=255)
     gccaccacccaatgctgcaaaatggcatcCTGCgg                               <  1:5762364‑M1/6‑1 (MQ=255)
     ccATCATGGTTGAAATGGTGGAAACACGTCTGCgg                               <  1:12166354/35‑1 (MQ=255)
      catcatGGTTGAAATGGTGGAAACACGTCTGCGGc                              >  1:6393067/1‑35 (MQ=255)
       ccccaccgaatgctgcaaaatggcatcCTGCGGCt                             >  1:8984967‑M1/28‑35 (MQ=255)
       caccaccgaatgctgcaaaatggcatcCTGCGGCt                             <  1:14362088‑M1/8‑1 (MQ=255)
       atcatGGTTGAAATTGTGGAAACACGTCTGCGGCt                             >  1:16723667/1‑35 (MQ=255)
       atcatGGTTGAAATGGTGGAAACACGTCTGCGGCt                             <  1:17289479/35‑1 (MQ=255)
       atcatGGTTGAAATGGTGGAAACACGTCTGCGGCt                             >  1:4474398/1‑35 (MQ=255)
       atcatGGTTGAAATGGTGGAAACACGTCTGCGGCt                             <  1:11979051/35‑1 (MQ=255)
       atcatGGTTGAAATGGGGGAAACACGTCTGCGGCt                             >  1:16637370/1‑35 (MQ=255)
        tcatGGTTGAAATGGTGGAAACACGTCTGCGGCTg                            <  1:8196838/35‑1 (MQ=255)
        tcatGGTTGAAATGGTGGAAACACGTCTGCGGCTg                            <  1:10246206/35‑1 (MQ=255)
        accaccgaatgctgcaaaatggcatcCTGCGGCTg                            >  1:12974149‑M1/27‑35 (MQ=255)
        accaccgaatgctgcaaaatggcatcCTGCGGCTg                            >  1:3905925‑M1/27‑35 (MQ=255)
         ccaccgaatgctgcaaaatggcatcCTGCGGCTgg                           <  1:9519770‑M1/10‑1 (MQ=255)
         catGGTTGAAATGGTGGAAACACGTCTGCGGCTgg                           >  1:10679645/1‑35 (MQ=255)
         catGGTTGAAATGGTGGAAACACGTCTGCGGCTgg                           <  1:806663/35‑1 (MQ=255)
          caccgaatgctgcaaaatggcatcCTGCGGCtggg                          <  1:15624186‑M1/11‑2 (MQ=255)
          caccgaatgctgcaaaatggcatcCTGCGGCtggg                          <  1:14814415‑M1/11‑2 (MQ=255)
          atGGTTGAAATGGTGGAAACACGTCTGCGGCTGGc                          <  1:18345703/35‑1 (MQ=255)
           tGGTTGAAATGGTGGAAACACGTCTGCGGCTgggg                         >  1:1608255/1‑33 (MQ=255)
           tGGTTGAAATGGTGGAAACACGTCTGCGGCTGGCn                         <  1:7472731/35‑1 (MQ=255)
           tGGTTGAAATGGTGGAAACACGTCTGCGGCTGGCg                         <  1:7822332/35‑1 (MQ=255)
           tGGTTGAAATGGTGGAAACACGTCTGCGGCTGGCg                         <  1:8027679/35‑1 (MQ=255)
           tGGTTGAAATGGTGGAAACACGTCTGCGGCTGGCg                         >  1:1213443/1‑35 (MQ=255)
           accgaatgctgcaaaatggcatcCTGCGGctgggg                         <  1:16929797‑M1/12‑3 (MQ=255)
            ggTTGAAATGGTGGAAACACGTCTGCGGCTGGGgg                        >  1:12511468/1‑35 (MQ=255)
            ggTTGAAATGGTGGAAACACGTCTGCGGCTGGGgg                        >  1:2484925/1‑35 (MQ=255)
            ggTTGAAATGGTGGAAACACGTCTGCGGCTGGCgg                        >  1:1042873/1‑35 (MQ=255)
             gTTGAAATGGTGGAAACACGTCTGCGGCTGGGggg                       >  1:5221235/1‑34 (MQ=255)
             gTTGAAATGGTGGAAACACGTCTGCGGCTGGGggg                       >  1:13070697/1‑34 (MQ=255)
             gTTGAAATGGGGAAAACACGTCTGCGGCTGGCggt                       <  1:8679794/35‑1 (MQ=25)
              ttGAAATGGTGGAAACACGTCTGCGGCTGGGgggg                      >  1:5295589/1‑33 (MQ=37)
              ttGAAATGGTGGAAACACGTCTGCGGCTGGCggtg                      <  1:15305407/35‑1 (MQ=255)
              ttGAAATGGTGGAAACACGTCTGCGGCTGGCggtg                      <  1:3644736/35‑1 (MQ=255)
              ttGAAATGGTGGAAACACGTCTGCGGCTGGCggtg                      <  1:11826721/35‑1 (MQ=255)
              ttGAAAGGGTGGAAACAAGTCTGCGGCTGGCggtg                      <  1:11141258/35‑1 (MQ=38)
              gaatgctgcaaaatggcatcCTGCGGCTggcgcgg                      <  1:9484261‑M1/15‑4 (MQ=255)
              gaatgctgcaaaatggcatcCTGCGGCTGGGggtg                      <  1:17463502‑M1/15‑1 (MQ=255)
               aatgctgcaaaatggcatcCTGCGGCTGGGggtgg                     <  1:10915846‑M1/16‑1 (MQ=255)
                gAAATGGTGGAAACACGTCTGCGGCTGGCggtggt                    <  1:5214422/35‑1 (MQ=255)
                gAAATGGTGGAAACACGTCTGCGGCTGGCggtggt                    <  1:611165/35‑1 (MQ=255)
                 aaaTGGTGGAAACACGTCTGCGGCTGGCGGTGGtt                   <  1:5011326/35‑1 (MQ=255)
                 aaaTGGTGGAAACACGTCTGCGGCTGGCGGTGGtt                   <  1:4555407/35‑1 (MQ=255)
                 aaaTGGTGGAAACACGTCTGCGGCTGGCGGTGGtt                   <  1:15809554/35‑1 (MQ=255)
                  aaTGGTGGAAACACGTCTGCGGCTGGGgggggggg                  >  1:2731277/1‑32 (MQ=25)
                  aaTGGTGGAAACACGTCTGCGGCTGGGgggggggg                  >  1:1775386/1‑32 (MQ=25)
                   aTGGTGGAAACACGTCTGCGGCTGGCGGTGGTTGa                 <  1:3433083/35‑1 (MQ=255)
                    tggtggAAACACGTCTGCGGCTGGCGGTGGTTGAg                <  1:8892881/35‑1 (MQ=255)
                     ggtggAAACACGTCTGCGGCTGGCGGTGGTTGAGc               <  1:10803969/35‑1 (MQ=255)
                      gtggAAACACGTCTGCGGCTGGCGGTGGTTGAGCt              <  1:13060557/35‑1 (MQ=255)
                      gtggAAACACGTCTGCGGCTGGCGGTGGTTGAGCt              <  1:55213/35‑1 (MQ=255)
                       tggAAACACGTCTGCGGCTGGTGGTGGTTGAGccg             <  1:6049402/35‑3 (MQ=37)
                       tggAAACACGTCTGCGGCTGGCGGTGGTTGAGCTg             <  1:3288918/35‑1 (MQ=255)
                       tggAAACACGTCTGCGGCTGGCGGTGGTTGAGCTg             <  1:18938790/35‑1 (MQ=255)
                        ggAAACACGTCTGCGGCTGGCGGTGGTTGAGCTgg            <  1:10358486/35‑1 (MQ=255)
                        ggAAACACGTCTGCGGCTGGCGGTGGTTGAGCTgg            <  1:12819352/35‑1 (MQ=255)
                        ggAAACACGTCTGCGGCTGGCGGTGGTTGAGCTgg            <  1:19437495/35‑1 (MQ=255)
                        ggAAACACGTCTACGGCTGGCGGTGGTTGAGCTgg            <  1:2911755/35‑1 (MQ=255)
                         gAAGCACGTCTGCGGCTGGCGGTGGTTGAGCTGGa           <  1:20597229/35‑1 (MQ=255)
                          aaaCACGTCTGCGGCTGGCGGTGGTTGAGCTGGaa          <  1:616783/35‑1 (MQ=255)
                          aaaCACGTCTGCGGCTGGCGGTGGTTGAGCTGGaa          <  1:12249335/35‑1 (MQ=255)
                           aaCACGTCTGCGGCTGGCGGTGGTTGAGCTGGAag         <  1:1471514/35‑1 (MQ=255)
                           aaCACGTCTGCGGCTGGCGGTGGTTGAGCTGGAag         <  1:3160437/35‑1 (MQ=255)
                           aaCACGTCTGCGGCTGGCGGTGGTTGAGCTGGAag         <  1:13805336/35‑1 (MQ=255)
                            acacGTCTGCGGCTGGCGGTGGTTGAGCTGGAaga        <  1:15708254/35‑1 (MQ=255)
                             cacGTCTGTGGCTGGCGGTGGTTGAGCTGGAagag       <  1:11037309/35‑1 (MQ=255)
                             cacGTCTGCGGCTGGCGGTGGTTGAGCTGGAagag       <  1:15892090/35‑1 (MQ=255)
                             cacGTCTGCGGCTGGCGGTGGTTGAGCTGGAagag       <  1:8353761/35‑1 (MQ=255)
                             cacGTCTGCGGCTGGCGGTGGTTGAGCTGGAagag       <  1:6884367/35‑1 (MQ=255)
                              acGTCTGCGGCTGGCGGTGGTTGAGCTGGAAGAgg      <  1:7701097/35‑1 (MQ=255)
                                 tCTGCGGCTGGCGGTGGTTGAGCTGGAAGAGGaaa   <  1:3341176/35‑1 (MQ=255)
                                 tCTGCGGCTGGCGGTGGTTGAGCTGGAAGAGGaaa   <  1:16808848/35‑1 (MQ=255)
                                 tCTGCGGCTGGCGGTGGTTGAGCTGGAAGAGGaaa   <  1:5383521/35‑1 (MQ=255)
                                  CTGCGGCTGGCGGTGGTTGAGCTGGAAGAGGaaaa  >  1:7626004‑M1/1‑35 (MQ=255)
                                  CTGCGGCTGGCGGTGGTTGAGCTGGAAGAGGaaaa  >  1:15521155‑M1/1‑35 (MQ=255)
                                  |                                  
TGTTTCCATCATGGTTGAAATGGTGGAAACACGTCTGCGGCTGGCGGTGGTTGAGCTGGAAGAGGAAAA  >  REL606/3182779‑3182847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.