New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3615477 =121 (1.180)11 (0.110) 4/48 NT 10.1% coding (3189/3474 nt) bcsC cellulose synthase subunit
?REL606 = 3947083 74 (0.720)coding (724/1656 nt) aslA acrylsulfatase‑like enzyme

Only 100 of 215 total aligned reads displayed.

TCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACG  >  REL606/3615443‑3615511
                                  |                                  
tcggGATCAGATTCATCAGCGGATAACGCGGCATg                                    <  1:8233938/35‑1 (MQ=255)
tcggGATCAGATTCATCAGCGGATAACGCGGCATg                                    >  1:18344935/1‑35 (MQ=255)
tcggGATCAGATTCATCAGCGGATAACGCGGCATg                                    >  1:19033080/1‑35 (MQ=255)
tcggGATCAGATTCATCAGCGGATAACGCGGCATg                                    <  1:5306821/35‑1 (MQ=255)
gcacggcatgaacgtcatctttgctgaacggcagg                                    <  1:4638967‑M1/1‑1 (MQ=255)
 cggGATCAGATTCATCAGCGGATAACGCGGCATgg                                   <  1:15217595/35‑1 (MQ=255)
 cacggcatgaacgtcatctttgctgaacggcaggg                                   <  1:757128‑M1/2‑1 (MQ=255)
 cacggcatgaacgtcatctttgctgaacggcaggg                                   <  1:12131706‑M1/2‑1 (MQ=255)
 cacggcatgaacgtcatctttgctgaacggcaggg                                   <  1:6411379‑M1/2‑1 (MQ=255)
 cacggcatgaacgtcatctttgctgaacggcaggg                                   <  1:4069072‑M1/2‑1 (MQ=255)
 cacggcatgaacgtcatctttgctgaacggcaggg                                   <  1:6600737‑M1/2‑1 (MQ=255)
 cacggcatgaacgtcatctttgctgaacggcaggg                                   <  1:10309945‑M1/2‑1 (MQ=255)
  gggATCAGATTCATCAGCGGATAACGCTGCATGGt                                  >  1:11704219/1‑35 (MQ=255)
  gggATCAGATTCATCAGCGGATAACGCGGCATGGt                                  <  1:14625854/35‑1 (MQ=255)
  gggATCAGATTCATCAGCGGATAACGCGGCATGGt                                  <  1:1568492/35‑1 (MQ=255)
  gggATCAGATTCATCAGCGGATAACGCGGCATGGt                                  <  1:20430572/35‑1 (MQ=255)
  acggcatgaacgtcatctttgctgaacggcagggg                                  <  1:16518166‑M1/3‑2 (MQ=255)
  acggcatgaacgtcatctttgctgaacggcagggg                                  <  1:3412097‑M1/3‑2 (MQ=255)
  acggcatgaacgtcatctttgctgaacggcagGGt                                  <  1:3757545‑M1/3‑1 (MQ=255)
   ggATCAGATTCATCAGCGGATAACGCGGCATGGtt                                 <  1:19864177/35‑1 (MQ=255)
   ggATCAGATTCATCAGCGGATAACGCGGCATGGtt                                 <  1:3812773/35‑1 (MQ=255)
   ggATCAGATTCATCAGCGGATAACGCGGCATGGtt                                 >  1:4031735/1‑35 (MQ=255)
   ggATCAGATTCATCAGCGGATAACGCGGCATGGtt                                 <  1:4442218/35‑1 (MQ=255)
   ggATCAGATTCATCAGCGGATAACGCGGCATGGtt                                 >  1:14440732/1‑35 (MQ=255)
   ggATCAGATTCATCAGCGGATAACGCGGCATGGtt                                 >  1:1112865/1‑35 (MQ=255)
   ggATCAGATTCATAAGCGGATAACGCGGCATGGtt                                 <  1:6192847/35‑1 (MQ=255)
   cggcatgaacgtcatctttgctgaacggcaggggt                                 <  1:17752810‑M1/4‑3 (MQ=255)
    ggcatgaacgtcatctttgctgaacggcaggggtt                                <  1:10025650‑M1/5‑4 (MQ=255)
    ggcatgaacgtcatctttgctgaacggcagggggt                                <  1:13436441‑M1/5‑4 (MQ=255)
    ggcatgaacgtcatctttgctgaacggcagGGttt                                <  1:4124910‑M1/5‑1 (MQ=255)
    gATCAGATTCATCAGCGGATAACGCGGCATGGttt                                <  1:11278470/35‑1 (MQ=255)
    gATCAGATTCATCAGCGGATAACGCGGCATGGttt                                <  1:2290300/35‑1 (MQ=255)
    gATCAGATTCATCAGCGGATAACGCGGCATGGttt                                >  1:17363205/1‑35 (MQ=255)
    gATCAGATTCATCAGCGGATAACGCGGCATCGttt                                >  1:6086143/1‑35 (MQ=255)
      tCAGATTCATCAGCGGATAACGCGGCATGGTTTTg                              <  1:14216808/35‑1 (MQ=255)
      tCAGATTCATCAGCGGATAACGCGGCATGGTTTTg                              >  1:13869694/1‑35 (MQ=255)
      tCAGATTCATCAGCGGATAACGCGGCATGGTTTTg                              >  1:7666771/1‑35 (MQ=255)
      tCAGATTCATCAGCGGATAACGCGGCATGGTTTTg                              <  1:5679561/35‑1 (MQ=255)
       cAGATTCATCAGCGGATAACGCGGCATGGTTTTgg                             <  1:9512767/35‑1 (MQ=255)
        aGATTCATCAGCGGATAACGCGGCATGGTTTTGGt                            >  1:2746637/1‑35 (MQ=255)
         gATTCATCAGCGGATAACGCGGCATGGTTTTgggg                           >  1:8339335/1‑33 (MQ=255)
         gATTCATCAGCGGATAACGCGGCATGGTTTTGGTg                           >  1:18803602/1‑35 (MQ=255)
          aacgtcatctttgctgaacggcagGGTtttggcgg                          <  1:16076943‑M1/11‑4 (MQ=255)
          aacgtcatctttgctgaacggcagGGGTTTGGtgg                          <  1:15384373‑M1/11‑2 (MQ=255)
          aTTCATCAGCGGATAACGCGGCATGGTTTTGGTGc                          >  1:13130302/1‑35 (MQ=255)
             catcaGCTGATAACGCGGCATGGTTTTGGTGCGTg                       >  1:363723/1‑35 (MQ=255)
             catcaGCGGATAACGCGGCATGGTTTTGGTGCGTg                       >  1:6635360/1‑35 (MQ=255)
             catcaGCGGATAACGCGGCATGGTTTTGGTGCGTg                       <  1:7332532/35‑1 (MQ=255)
             catcaGCGGATAACGCGGCATGGTTTTGGTGCGTg                       <  1:9241500/35‑1 (MQ=255)
              atcaGAGGATAACGCGGCATGGTTTTGGTGCGTGa                      <  1:13035196/35‑1 (MQ=255)
               tcaGCGGATAACGCGGCATGGTTTTGGTGCGTGaa                     <  1:10099916/35‑1 (MQ=255)
               tcaGCGGATAACGCGGCATGGTTTTGGTGCGTGaa                     >  1:2828948/1‑35 (MQ=255)
                caGCGGATAACGCGGCATGGTTTTGGTGCGTGAAt                    >  1:6896359/1‑35 (MQ=255)
                caGCGGATAACGCGGCATGGTTTTGGTGCGTGAAt                    <  1:12172077/35‑1 (MQ=255)
                caGCGGATAACGCGGCATGGTTTTGGTGCGTGAAt                    >  1:17276198/1‑35 (MQ=255)
                caGCGGATAACGCGGCATGGTTTTGGTGCGTGAAt                    >  1:16247517/1‑35 (MQ=255)
                 aGCGGATAACGCGGCATGGTTTTGGTGCGTGAATg                   >  1:13499483/1‑35 (MQ=255)
                 aGCGGATAACGCGGCATGGTTTTGGTGCGTGAATg                   <  1:2480730/35‑1 (MQ=255)
                 aGCCGATAACGCGGCATGGTTTTGGTGCGTGAATg                   <  1:16580276/35‑1 (MQ=255)
                   cGGATAACGCGGCATGGTTTTGGTGCGTGAATGCg                 <  1:10723484/35‑1 (MQ=255)
                   cGGATAACGCGGCATGGTTTTGGTGCGTGAATGCg                 <  1:9876087/35‑1 (MQ=255)
                    ggATAACGCGGCATGGTTTTGGTGCGTGAATGCGa                <  1:13175433/35‑1 (MQ=255)
                    ggATAACGCGGCATGGTTTTGGTGCGTGAATGCGa                >  1:6307615/1‑35 (MQ=255)
                    ggATAACGCGGCATGGTTTTGGTGCGTGAATGCGa                >  1:19615824/1‑35 (MQ=255)
                    ggATAACGCGGCATGGTTTTGGTGCGTGAATGCGa                >  1:12415727/1‑35 (MQ=255)
                     gATAACGCGGCATGGTTTTGGTGCGTGAATGCGAc               <  1:2653149/35‑1 (MQ=255)
                     gATAACGCGGCATGGTTTTGGTGCGTGAATGCGAc               <  1:13345717/35‑1 (MQ=255)
                     gATAACGCGGCATGGTTTTGGTGCGTGAATGCGAc               <  1:16865485/35‑1 (MQ=255)
                      aTAACGCGGCATGGTTTTGGTGCGTGAATGCGAcc              >  1:10190291/1‑35 (MQ=255)
                      aTAACGCGGCATGGTTTTGGTGCGTGAATGCGAcc              >  1:14155255/1‑35 (MQ=255)
                       tAACGCGGCATGGTTTTGGTGCGTGAATGCGACCa             >  1:11497830/1‑35 (MQ=255)
                       tAACGCGGCATGGTTTTGGTGCGTGAATGCGACCa             <  1:5061280/35‑1 (MQ=255)
                       tAACGCGGCATGGTTTTGGTGCGTGAATGCGACCa             <  1:4832280/35‑1 (MQ=255)
                        aaCGCGGCATGGTTTTGGTGCGTGAATGCGACCAc            <  1:7952782/35‑1 (MQ=255)
                        aaCGCGGCATGGTTTTGGTGCGTGAATGCGACCAc            <  1:20494777/35‑1 (MQ=255)
                        aaCGCGGCATGGTTTTGGTGCGTGAATGCGACCAc            <  1:18096819/35‑1 (MQ=255)
                        aaCGCGGCATGGTTTTGGTGCGTGAATGCGACCAc            >  1:18307843/1‑35 (MQ=255)
                          cgcgGCATGGTTTTGGTGCGTGAATGCGACCACGa          <  1:20119921/35‑1 (MQ=255)
                          cgcgGCATGGTTTTGGTGCGTGAATGCGACCACGa          >  1:9650776/1‑35 (MQ=255)
                          cgcgGCATGGTTTTGGTGCGTGAATGCGACCACGa          <  1:3192784/35‑1 (MQ=255)
                           gcgGCATGGTTTTGGTGCGTGAATGCGACCACGAg         <  1:676851/35‑1 (MQ=255)
                           gcgGCATGGTTTTGGTGCGTGAATGCGACCACGAg         >  1:12704864/1‑35 (MQ=255)
                            cgGCATGGTTTTGGTGCGTGAATGCGACCACGAGc        <  1:13604333/35‑1 (MQ=255)
                            cgGCATGGTTTTGGTGCGTGAATGCGACCACGAGc        >  1:8875660/1‑35 (MQ=255)
                            cgGCATGGTTTTGGTGCGTGAATGCGACCACGAGc        <  1:18203563/35‑1 (MQ=255)
                            cgGCATGGTTTTGGTGCGTGAATGCGACCACGAGc        >  1:19629687/1‑35 (MQ=255)
                             ggCATGGTTTTGGTGCGTGAATGCGACCACGAGcc       <  1:9846322/35‑1 (MQ=255)
                             ggCATGGTTTTGGTGCGTGAATGCGACCACGAGcc       >  1:8547106/1‑35 (MQ=255)
                             ggCATGGTTTTGGTGCGTGAATGCGACCACGAGcc       >  1:19243871/1‑35 (MQ=255)
                             ggCATGGTTTTGGTGCGTGAATGCGACAACGAGcc       <  1:7309393/35‑1 (MQ=255)
                               cATGGTTTTGGTGCGTGAATGCGACCACGAGCCAg     >  1:5534126/1‑35 (MQ=255)
                               cATGGTTTTGGTGCGTGAATGCGACCACGAGCCAg     >  1:16197828/1‑35 (MQ=255)
                               cATGGTTTTGGTGCGTGAATGCGACCACGAGCCAg     >  1:9366267/1‑35 (MQ=255)
                                aTGGTTTTGGTGCGTGAATGCGACCACGAGCCAGa    >  1:14810216/1‑35 (MQ=255)
                                aTGGTTTTGGTGCGTGAATGCGACCACGAGCCAGa    >  1:15069997/1‑35 (MQ=255)
                                aTGGTTTTGGTGCGTGAATGCGACAAGGAGCCAGa    >  1:927562/1‑35 (MQ=37)
                                 tGGTTTTGGTGCGTGAATGCGACCACGAGCCAGAc   >  1:12563979/1‑35 (MQ=255)
                                 tGGTTTTGGTGCGTGAATGCGACCACGAGCCAGAc   <  1:18574849/35‑1 (MQ=255)
                                 tGGTTTTGGTGCGTGAATGCGACCACGAGCCAGAc   <  1:6966717/35‑1 (MQ=255)
                                  ggTTTTGGTGCGTGAATGCGACCACGAGCCAGACg  >  1:9025100/1‑35 (MQ=255)
                                  |                                  
TCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACG  >  REL606/3615443‑3615511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.