New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1112140 =NA (NA)14 (0.140) 5/48 NT 35.9% noncoding (81/88 nt) serX tRNA‑Ser
?REL606 = 3173882 25 (0.240)coding (905/1245 nt) ygjU sodium:serine/threonine symporter

ACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAA  >  REL606/1112106‑1112155
                                  |               
aCTTTCGTACGGGCTTTTTTTTAAATATGGCGGTg                 <  1:19057832/35‑1 (MQ=255)
 cTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGa                <  1:7512431/35‑1 (MQ=255)
 cTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGa                <  1:6099722/35‑1 (MQ=255)
 cTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGa                <  1:15562274/35‑1 (MQ=255)
  tttCGTACGGGCTTTTTTTTAAATATGGCGGTGAg               <  1:12331929/35‑1 (MQ=255)
  tttCGTACGGGCTTTTTTTTAAATATGGCGGTGAg               <  1:6568825/35‑1 (MQ=255)
   ttCGTACGGGCTTTTTTTTAAATATGGCGGTGAgg              <  1:4137375/35‑1 (MQ=255)
    tCGTACGGGCTTTTTTTTAAATATGGCGGGGGggg             >  1:12072989/1‑35 (MQ=21)
    tCGTACGGGCTTTTTTTTAAATATGGCGGGGGggg             >  1:19919050/1‑35 (MQ=21)
     cGTACGGGCTTTTTTTTAAATATGGCGGTGAgggg            <  1:13090109/35‑1 (MQ=255)
     cGTACGGGCTTTTTTTTAAATATGGCGGGGGgggg            >  1:257047/1‑35 (MQ=21)
     cGTACGGGCTTTTTTTTAAATATGGCGGGGGgggg            >  1:15864048/1‑35 (MQ=21)
      gTACGGGCTTTTTTTTAAATATGGCGGTGAggggg           <  1:16871644/35‑1 (MQ=255)
      gTACGGGCTTTTTTTTAAATATGGCGGGGGggggg           >  1:11112339/1‑35 (MQ=21)
      gTACGGGCTTTTTTTTAAATATGGCGGGGGggggg           >  1:4259606/1‑35 (MQ=21)
       tACGGGCTTTTTTTTAAATATGGCGGTGAgggggg          <  1:8074958/35‑1 (MQ=255)
        aCGGGCTTTTTTTTAAATATGGCGGTGAggggggg         <  1:16813159/35‑1 (MQ=255)
        aCGGGCTTTTTTTTAAATATGGCGGTGAggggggg         <  1:14075126/35‑1 (MQ=255)
         tctgCTTTTTTTTAAATATGGCGGTGAGGGGGGGa        <  1:12718214/32‑1 (MQ=255)
         cGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGa        <  1:20054451/35‑1 (MQ=255)
         cGGGCTTTTTTTTAAATATGGCGGGGGgggggggg        >  1:10054781/1‑34 (MQ=21)
         cGGGCTTTTTTTTAAATATGGCGGGGGgggggggg        >  1:5842583/1‑34 (MQ=21)
         cGGGCTTTTTTTTAAATATGGCGGGGGgggggggg        >  1:19744288/1‑34 (MQ=21)
         cGGGCTTTTTTTTAAATATGGCGGGGGgggggggg        >  1:19415424/1‑34 (MQ=21)
          gggCTTTTTTTTAAATATGGCGGTGAGGGGGGGAt       <  1:20398084/35‑1 (MQ=255)
          gggCTTTTTTTTAAATATGGCGGGGGggggggggg       >  1:3148308/1‑33 (MQ=18)
          gggCTTTTTTTTAAATATGGCGGGGGggggggggg       >  1:13732365/1‑33 (MQ=18)
          gggCTTTTTTTTAAATATGGCGGGGGggggggggg       >  1:4528432/1‑33 (MQ=18)
          gggCTTTTTTTTAAATATGGCGGGGGggggggggg       >  1:5842300/1‑33 (MQ=18)
          gggCTTTTTTTTAAATATGGCGGGGGggggggggg       >  1:2032715/1‑33 (MQ=18)
           ggCTTTTTTTTAAATATGGCGGGGGgggggggggg      >  1:5933179/1‑32 (MQ=18)
             cTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCg    <  1:14281599/35‑1 (MQ=255)
              ttttttttAAATATGGCGGTGAGGGGGGGATTCGa   <  1:3697806/35‑1 (MQ=255)
              ttttttttAAATATGGCGGTGAGGGGGGGATTCGa   <  1:11591409/35‑1 (MQ=255)
               tttttttAAATATGGCGGTGAGGGGGGGATTCGaa  <  1:2261714/35‑1 (MQ=40)
               tttttttAAATATGGCGGTGAGGGGGGGATTCGaa  <  1:13373054/35‑1 (MQ=40)
                                  |               
ACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAA  >  REL606/1112106‑1112155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.