New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3006451 = | 87 (0.850) | 9 (0.100) | 4/44 | NT | 11.8% | coding (461/819 nt) | yafZ | conserved protein |
? | REL606 | 4115747 = | 55 (0.580) | coding (1806/2181 nt) | katG | catalase/hydroperoxidase HPI(I) |
GCTTTTCCTCAATCCGGTCAAAAACCCCCACCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3006486‑3006451 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctGACGCTGACCGCGCCGGAAATGACTGCGCTGGTG > REL606/4115747‑4115780 GCTTTTCCTCAATCCGGTCAAAAACCCCCACCACC > 1:4133989/1‑35 GCTTTTCCTCAATCCGGTCAAAAACCCCCACCACC > 1:18387520/1‑35 GCTTTTCCTCAATCCGGTCAAAAACCCCCACCACC > 1:12916049/1‑35 aTTTTCCTCAATCCGGTCAAAACCCCCCACCACCT < 1:12343930/34‑1 CTTTTCCTCAATCCGGTCAACAACCCCCACCACCT > 1:17330895/1‑35 CTTTTCCTCAATCCGGTCAAAAACCCCCCCCACCT < 1:19477543/35‑1 CTTTTCCTCAATCCGGTCAAAAACCCCCACCACCT > 1:4480962/1‑35 CTTTTCCTCAATCCGGTCAAAAACCCCCACCACCT > 1:15198347/1‑35 CTTTTCCTCAATCCGGTCAAAAACCCCCACCACCT > 1:13360686/1‑35 CTTTTCCTCAATCCGGTCAAAAACCCCCACCACCT < 1:12425915/35‑1 CTTTTCCTCAATCCGGTCAAAAACCCCCACCACCT < 1:10350784/35‑1 CTTTTCCTCAATCCGGTCAAAAACCCCCACCACCT > 1:10874635/1‑35 AAACCCCCACCACCTGACGCTGACCGCGCCGGAAA < 1:11358228/35‑1 AAACCCCCACCACCTGACGCTGACCGCGCCGGAAA < 1:2578947/35‑1 AACCCCCACCACCTGACGCTGACCGCGCAGGAAAT < 1:482906/35‑1 ACCCCCACCCCCTGACGCTGACCGCGCCGGAAATG < 1:17304241/35‑1 caACCACCTGACGCTGACCGCGCCGGAAATGACTG < 1:17535526/33‑1 aCACCACCTGACGCTGACCGCGCCGGAAATGACTG < 1:9018580/34‑1 CCACCACCTGACGCTGACCGCGCCGGAAATGACTG < 1:7306515/35‑1 CCACCACCTGACGCTGACCGCGCCGGAAATGACTG < 1:18268953/35‑1 CCACCACCTGACGCTGACCGCGCCGGAAATGACTG < 1:4182288/35‑1 CCACCACCTGACGCTGACCGCGCCGGAAATGACTG < 1:2521851/35‑1 ccCCTGACGCTGACCGCGCCGGAAATGACTGCGCT < 1:10425245/33‑1 CACCTGACGCTGACCGCGCCGGAAATGACTGCGCT < 1:9598456/35‑1 CACCTGACGCTGACCGCGCCGGAAATGACTGCGCT < 1:8940918/35‑1 cCCTGACGCTGCCCGCGCCGGAAATGACTGCGCTG < 1:13207224/34‑1 cCCTGACGCTGCCCGCGCCGGAAATGACTGCGCTG < 1:14739271/34‑1 ACCTGACGCTGACCGCGCCGGAAATGACTGCGCTG < 1:7888284/35‑1 ACCTGACGCTGACCGCGCCGGAAATGACTGCGCTG < 1:15020124/35‑1 CCTGACGCTGACCGCGCCGGAAATGACTGCGCTGG < 1:6144945/35‑1 CCTGACGCTGACCGCGCCGGAAATGACTGCGCTGG < 1:20055334/35‑1 CTGACGCTGACCGCGCCGGAAATGACTGCGCTGGT > 1:18971399/1‑35 CTGACGCTGACCGCGCCGGAAATGACTGCGCTGGT < 1:18933139/35‑1 CTGACGCTGACCGCGCCGGAAATGACTGCGCTGGT < 1:12507966/35‑1 CTGACGCTGACCGCGCCGGAAATGACTGCGCTGGT > 1:2915549/1‑35 CTGACGCTGACCGCGCCGGAAATGACTGCGCTGGT > 1:78794/1‑35 CTGACGCTGACCGCGCCGGAAATGACTGCGCTGGT < 1:20101299/35‑1 TGACGCTGACCGCGCCGGAAATGACTGCGCTGGTG < 1:7156370/35‑1 TGACGCTGACCGCGCCGGAAATGACTGCGCTGGTG < 1:8134000/35‑1 TGACGCTGACCGCGCCGGAAATGACTGCGCTGGTG < 1:14838829/35‑1 TGACGCTGACCGCGCCGGAAATGACTGCGCTGGTG > 1:20473329/1‑35 TGACGCTGACCGCGCCGGAAATGACTGCGCTGGTG > 1:2265940/1‑35 TGACGCTGACCGCGCCGGAAATGACTGCACTGGTG > 1:3714628/1‑35 GCTTTTCCTCAATCCGGTCAAAAACCCCCACCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3006486‑3006451 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctGACGCTGACCGCGCCGGAAATGACTGCGCTGGTG > REL606/4115747‑4115780 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |