New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1036071 | 104 (1.010) | 13 (0.130) | 7/46 | NT | 13.9% | intergenic (+43/+33) | ycbG/ompA | hypothetical protein/outer membrane protein A (3a;II*;G;d) |
? | REL606 | 3487307 = | 61 (0.620) | coding (440/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
Only 100 of 114 total aligned reads displayed.
CTGATACAATCTTCACCTCCGCGCAAAAAAGAACAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGAT > REL606/3487273‑3487341 | cTGATACAATCTTCACCTCCGCGCAAAAAAGAACa < 1:8836133/35‑1 (MQ=255) cTGATACAATCTTCACCTCCGCGCAAAAAAGAACa > 1:6574570/1‑35 (MQ=255) cTGATACAATCTTCACCTCCGCGCAAAAAAGAACa > 1:15625119/1‑35 (MQ=255) tGATACAATCTTCACCTCCGCGCAAAAAAGAACAg > 1:17553612/1‑35 (MQ=255) gATACAATCTTCACCTCCGCGCAAAAAAGAACAGc < 1:6155610/35‑1 (MQ=255) gATACAATCTTCACCTCCGCGCAAAAAAGAACAGc < 1:5960495/35‑1 (MQ=255) gATACAATCTTCACCTCCGCGCAAAAAAGAACAGc > 1:11897065/1‑35 (MQ=255) gATACAATCTTCACCTCCGCGCAAAAAAGAACAGc > 1:4925647/1‑35 (MQ=255) gATACAATCTTCACCTCCGCGCAAAAAAGAACAGc < 1:18583710/35‑1 (MQ=255) gATACAATCTTCACCTCCGCGCAAAAAAGAACAGc > 1:19082025/1‑35 (MQ=255) tACAATCTTCACCTCCGCGCAAAAAAGAACAGCcg > 1:15149592/1‑35 (MQ=255) aCAATCTTCACCTCCGCGCAAAAAAGAACAGCcgc > 1:15971006/1‑35 (MQ=255) aCAATCTTCACCTCCGCGCAAAAAAGAACAGCcgc > 1:20296534/1‑35 (MQ=255) cAATCTTCACCTCCGCGCAAAAAAGAACAGCcgcg > 1:20112322/1‑35 (MQ=255) cAATCTTCACCTCCGCGCAAAAAAGAACAGCcgcg > 1:19239867/1‑35 (MQ=255) cAATCTTCACCTCCGCGCAAAAAAGAACAGCcgcg > 1:4552635/1‑35 (MQ=255) cAATCTTCACCTCCGCGCAAAAAAGAACAGCcgcg > 1:11118742/1‑35 (MQ=255) aaTCTTCACCTCCGCGCAAAAAAGAACAGCcgcgc > 1:4016331/1‑35 (MQ=255) aaTCTTCACCTCCGCGCAAAAAAGAACAGCcgcgc > 1:17030806/1‑35 (MQ=255) aTCTTCACCTCCGCGCAAAAAAGAACAGCcgcgcg > 1:6145851/1‑35 (MQ=255) tCTTCACCTCCGCGCAAAAAAGAACAGCCGCgcgg > 1:15449187/1‑35 (MQ=255) tCTTCACCTCCGCGCAAAAAAGAACAGCCGCgcgg > 1:9374517/1‑35 (MQ=255) cTTCACCTCCGCGCAAAAAAGAACAGCCGCgcggc > 1:2227809/1‑35 (MQ=255) cTTCACCTCCGCGCAAAAAAGAACAGCCGCgcggc > 1:14290613/1‑35 (MQ=255) cTTCACCTCCGCGCAAAAAAGAACAGCCGCgcggc > 1:17139602/1‑35 (MQ=255) cTTCACCTCCGCGCAAAAAAGAACAGCCGCgcggc > 1:5311723/1‑35 (MQ=255) ttCACCTCCGCGCAAAAAAGAACAGCCGCgcggcg > 1:734959/1‑35 (MQ=255) ttCACCTCCGCGCAAAAAAGAACAGCCGCgcggcg > 1:7074497/1‑35 (MQ=255) ttCACCTCCGCGCAAAAAAGAACAGCCGCgcggcg > 1:6617151/1‑35 (MQ=255) ttCACCTCCGCGCAAAAAAGAACAGCCGCgcggcg > 1:11154850/1‑35 (MQ=255) tCACCTCCGCGCAAAAAAGAACAGCCGCGCGgcgc > 1:4447246/1‑35 (MQ=255) tCACCTCCGCGCAAAAAAGAACAGCCGCGCGgcgc > 1:16198365/1‑35 (MQ=255) tCACCTCCGCGCAAAAAAGAACAGCCGCGCGgcgc > 1:2215889/1‑35 (MQ=255) aCCTCCGNGCAAAAAAGAACAGCCGCGCGGCGCAg > 1:14641984/1‑35 (MQ=255) aCCTCCGCGCAAAAAAGAACAGCCGCGCGGCGCAg > 1:13659382/1‑35 (MQ=255) aCCTCCGCGCAAAAAAGAACAGCCGCGCGGCGCAg > 1:11398905/1‑35 (MQ=255) aCCTCCGCGCAAAAAAGAACAGCCGCGCGGCGCAg > 1:12560139/1‑35 (MQ=255) aCCTCCGCGCAAAAAAGAACAGCCGCGCGGCGCAg > 1:6818294/1‑35 (MQ=255) aCCTCCGCGCAAAAAAGAACAGCCGCGCGGCGCAg > 1:15626385/1‑35 (MQ=255) aCCTCCGCGCAAAAAAGAACAGCCGCGCGGCGCAg > 1:867393/1‑35 (MQ=255) tCCGCGCAAAAAAGAACAGCCGCGCGGCGCAGGTg > 1:3526587/1‑35 (MQ=255) ccGCGCAAAAAAGAACAGCCGCGCGGCGCAGGTGa > 1:19461352/1‑35 (MQ=255) cacaaaaaaaaccccAGCCGCGCGGCGCAGGTGaa < 1:18923468‑M2/20‑1 (MQ=255) gcgcAAAAAAGAACAGCCGCGCGGCGCAGGTGAAg > 1:3272791/1‑35 (MQ=255) gcgcAAAAAAGAACAGCCGCGCGGCGCAGGTGAAg > 1:17511141/1‑35 (MQ=255) gcgcAAAAAAGAACAGCCGCGCGGCGCAGGTGAAg > 1:16828914/1‑35 (MQ=255) gcaaaaaaaaccccAGCCGCGCGGCGCAGGTGAAg < 1:8829321‑M2/21‑1 (MQ=255) cgcAAAAAAGAACAGCCGCGCGGCGCAGGTGAAGt > 1:10926143/1‑35 (MQ=255) cgcAAAAAAGAACAGCCGCGCGGCGCAGGTGAAGt > 1:13318485/1‑35 (MQ=255) cgcAAAAAAGAACAGCCGCGCGGCGCAGGTGAAGt > 1:14917989/1‑35 (MQ=255) caaaaaaacccccAGCCGCGCGGCGCAGGTGAAGt < 1:16884076‑M2/22‑1 (MQ=255) caaaaaaacccccAGCCGCGCGGCGCAGGTGAAGt < 1:6571056‑M2/22‑1 (MQ=255) caaaaaaaaccccAGCCGCGCGGCGCAGGTGAAGt < 1:18229389‑M2/22‑1 (MQ=255) gcAAAAAAGAACAGCCGCGCGGCGCAGGTGAAGTg > 1:2173042/1‑35 (MQ=255) gcAAAAAAGAACAGCCGCGCGGCGCAGGTGAAGTg > 1:8661171/1‑35 (MQ=255) gcAAAAAAGAACAGCCGCGCGGCGCAGGTGAAGTg > 1:6900128/1‑35 (MQ=255) aaaaaaaaccccAGCCGCGCGGCGCAGGTGAAGTg < 1:4902896‑M2/23‑1 (MQ=255) aaaaaaaaccccAGCCGCGCGGCGCAGGTGAAGTg < 1:8983058‑M2/23‑1 (MQ=255) cAAAAAAGAACAGCCGCGCGGCGCAGGTGAAGTGa > 1:20558076/1‑35 (MQ=255) cAAAAAAGAACAGCCGCGCGGCGCAGGTGAAGTGa > 1:290590/1‑35 (MQ=255) cAAAAAAGAACAGCCGCGCGGCGCAGGTGAAGTGa > 1:3118826/1‑35 (MQ=255) cAAAAAAGAACAGCCGCGCGGCGCAGGTGAAGTGa > 1:3802937/1‑35 (MQ=255) aaaaaaaccccAGCCGCGCGGCGCAGGTGAAGTGa < 1:5319413‑M2/24‑1 (MQ=255) aaaaacccccAGCCGCGCGGCGCAGGTGAAGTGAc < 1:8432807‑M2/25‑1 (MQ=255) aaaaacccccAGCCGCGCGGCGCAGGTGAAGTGAc < 1:6483821‑M2/25‑1 (MQ=255) aaaaaaGAACAGCCGCGCGGCGCAGGTGAAGTGAc > 1:17928695/1‑35 (MQ=255) aaaaaaGAACAGCCGCGCGGCGCAGGTGAAGTGAc > 1:1298849/1‑35 (MQ=255) aaaacccccAGCCGCGCGGCGCAGGTGAAGTGACg < 1:13035882‑M2/26‑1 (MQ=255) aaaaaGAACAGCCGCGCGGCGCAGGTGAAGTGACg > 1:2257667/1‑35 (MQ=255) aaaaGAACAGCTGCGCGGCGCAGGTGAAGTGACGa > 1:10886032/1‑35 (MQ=255) aaaaGAACAGCCGCGCGGCGCAGGTGAAGTGACGa > 1:4655858/1‑35 (MQ=255) aaaaGAACAGCCGCGCGGCGCAGGTGAAGTGACGa > 1:8573460/1‑35 (MQ=255) aaaaGAACAGCCGCGCGGCGCAGGTGAAGTGACGa > 1:812505/1‑35 (MQ=255) aaaaGAACAGCCGCGCGGCGCAGGTGAAGTGAAGa > 1:8837740/1‑35 (MQ=255) aaaccccAGCCGCGCGGCGCAGGTGAAGTGACGAt < 1:8622292‑M2/28‑1 (MQ=255) aaaGAACAGCCGCGCGGCGCAGGTGAAGTGACGAt > 1:17489682/1‑35 (MQ=255) aaaGAACAGCCGCGCGGCGCAGGTGAAGTGACGAt > 1:1618347/1‑35 (MQ=255) aaaGAACAGCCGCGCGGCGCAGGTGAAGTGACGAt > 1:8105279/1‑35 (MQ=255) ccccccAGCCGCGCGGCGCAGGTGAAGTGACGAtt < 1:8599492‑M2/29‑1 (MQ=255) acccccAGCCGCGCGGCGCAGGTGAAGTGACGAtt < 1:9172949‑M2/29‑1 (MQ=255) aaGAACAGCCGCGCGGCGCAGGTGAAGTGACGAtt > 1:16391500/1‑35 (MQ=255) cccccAGCCGCGCGGCGCAGGTGAAGTGACGATTa < 1:3616404‑M2/30‑1 (MQ=255) gAACAGCCGCGCGGCGCAGGTGAAGTGACGATTAt > 1:9243890/1‑35 (MQ=255) gAACAGCCGCGCGGCGCAGGTGAAGTGACGATTAt > 1:12516658/1‑35 (MQ=255) ccccAGCCGCGCGGCGCAGGTGAAGTGACGATTAt < 1:11496360‑M2/31‑1 (MQ=255) cccAGCCGCGCGGCGCAGGTGAAGTGACGATTATc < 1:2951344‑M2/32‑1 (MQ=255) cccAGCCGCGCGGCGCAGGTGAAGTGACGATTATc < 1:18316977‑M2/32‑1 (MQ=255) aaCAGCCGCGCGGCGCAGGTGAAGTGACGATTATc > 1:12469996/1‑35 (MQ=255) aaCAGCCGCGCGGCGCAGGTGAAGTGACGATTATc > 1:12445115/1‑35 (MQ=255) ccAGCCGCGCGGCGCAGGTGAAGTGACGATTATCg < 1:16706219‑M2/33‑1 (MQ=255) aCAGCCGCGCGGCGCAGGTGAAGTGACGATTATCg > 1:8202517/1‑35 (MQ=255) cAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGa < 1:10888846‑M2/34‑1 (MQ=255) cAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGa > 1:2755481‑M2/2‑35 (MQ=255) cAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGa < 1:8751886‑M2/34‑1 (MQ=255) cAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGa < 1:14111691‑M2/34‑1 (MQ=255) cAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGa < 1:16636240‑M2/34‑1 (MQ=255) cAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGa < 1:13962886‑M2/34‑1 (MQ=255) aGCCGCGCGGCGCAGGTGAAGTGACGATTATCGAt > 1:15300009/1‑35 (MQ=255) aGCCGCGCGGCGCAGGTGAAGTGACGATTATCGAt < 1:15618867/35‑1 (MQ=255) aGCCGCGCGGCGCAGGTGAAGTGACGATTATCGAt < 1:12700068/35‑1 (MQ=255) | CTGATACAATCTTCACCTCCGCGCAAAAAAGAACAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGAT > REL606/3487273‑3487341 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |