Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,691,510 | G→A | 36.0% | intergenic (+45/‑61) | ydgR → / → gst | putative tripeptide transporter permease/glutathionine S‑transferase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,691,510 | 0 | G→A | 36.0% | 133.5 ‑0.3 ‑0.2 | 150 | intergenic (+45/‑61) | ydgR/gst | putative tripeptide transporter permease/glutathionine S‑transferase |
Reads supporting (aligned to +/- strand): new base (22/32): ref base (43/53): total (65/85) | ||||||||||
Fisher's exact test strand distribution p-value = 7.32e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.43e-01 |
Only 100 of 166 total aligned reads displayed.
AACTCTTTTACAAGCCGCTAACTTTTCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCACTACCATACTT > REL606/1691476‑1691544 | acctctTTAAAAAGCCGCTAACTTTTCGTTAGCgg < 1:10618943/33‑1 (MQ=25) aaCTCTTTTACAAGCCGCTAACTTTTCGTTAGCgg > 1:19562068/1‑35 (MQ=255) aaCTCTTTTACAAGCCGCTAACTTTTCGTTAGCgg > 1:5820812/1‑35 (MQ=255) cccgtttctctggcaataatcgcggttaattCGGc < 1:937810‑M1/4‑1 (MQ=255) cccgtttctctggcaataatcgcggttaattCGGc > 1:3806001‑M1/32‑35 (MQ=255) aCTCTTTTACAAGCCGCTAACTTTTCGCTAGCGGc > 1:18143526/1‑35 (MQ=255) aCTCTTTAAAAAGCCGCTAACTTTTCGTTAGCGGc < 1:13731814/35‑1 (MQ=37) ctctTTTACAAGCCGCTAACTTTTCGTTAGCGGCt > 1:11510685/1‑35 (MQ=255) ccgtttctctggcaataatcgcggttaattCGGCt > 1:16204962‑M1/31‑35 (MQ=255) ccgtttctctggcaataatcgcggttaattCGGCt > 1:15141085‑M1/31‑35 (MQ=255) ccgtttctctggcaataatcgcggttaattCGGCt > 1:855929‑M1/31‑35 (MQ=255) tctTTTACAAGCCGCTAACTTTTCGTTAGCGGCtt > 1:15516921/1‑35 (MQ=255) tctTTAAAAAGCCGCTAACTTTTCGTTAGCGACtt < 1:14493550/35‑1 (MQ=25) cgtttctctggcaataatcgcggttaattTGGCtt < 1:13597224‑M1/6‑1 (MQ=255) cgtttctctggcaataatcgcggttaattCGGCtt < 1:19339706‑M1/6‑1 (MQ=255) cgtttctctggcaataatcgcggttaattCGGCtt < 1:2924524‑M1/6‑1 (MQ=255) cgtttctctggcaataatcgcggttaattCGGCtt < 1:10048728‑M1/6‑1 (MQ=255) cgtttctctggcaataatcgcggttaattCGGCtt > 1:13019330‑M1/30‑35 (MQ=255) gtttctctggcaataatcgcgggtaattCGGCttt < 1:15061296‑M1/7‑1 (MQ=255) ctTTTACAAGCCGCTAACTTTTCGTTAGCGGCttt > 1:9213871/1‑35 (MQ=255) ctTTTACAAGCCGCTAACTTTTCGTTAGCGGCttt > 1:1287510/1‑35 (MQ=255) ttttACAAGCCGCTAACTTTTCGTTAGCGGCtttt > 1:5083523/1‑35 (MQ=255) ttttACAAGCCGCTAACTTTTCGTTAGCGGCtttt > 1:13567555/1‑35 (MQ=255) tttctctggcaataatcgcggttaattCGGCtttt < 1:4052707‑M1/8‑1 (MQ=255) ttctctggcaataatcgcggttaattCGGCttttt < 1:6579571‑M1/9‑1 (MQ=255) ttACAAGCCGCTAACTTTTCGTTAGCGGCtttttt > 1:16295465/1‑35 (MQ=255) tctctggcaataatcgcggttaattCGGCtttttt < 1:5205646‑M1/10‑1 (MQ=255) tctctggcaataatcgcggttaattCGGCtttttt < 1:10465239‑M1/10‑1 (MQ=255) tACAAGCCGCTAACTTTTCGTTAGCGACttttttt > 1:8377365/1‑35 (MQ=255) ctctggcaataatcgcggttaattCGGCttttttt < 1:2182189‑M1/11‑1 (MQ=255) aaaaaGCCGCTAACTTTTCGTTAGCGACttttttt < 1:5981617/32‑1 (MQ=37) aaCAAGCCGCTAACTTTTCGTTAGCGACttttttt < 1:13748388/34‑1 (MQ=255) aCAAGCCGCTAACTTTTCGTTAGCGGCtttttttt > 1:1561176/1‑35 (MQ=255) aCAAGCAGCTAACTTTTCGTTAGCGACtttttttt < 1:5983265/35‑1 (MQ=37) ctggcaataatcgcggttaattCGgctttttttct < 1:464778‑M1/13‑3 (MQ=255) ctggcaataatcgcggttaattCGGcttttttttc < 1:2201791‑M1/13‑2 (MQ=255) cAAGCCGCTAACTTTTCGTTAGCGGCttttttttt > 1:16991555/1‑35 (MQ=255) cAAGCCGCTAACTTTTCGTTAGCGGCttttttttt > 1:14550017/1‑35 (MQ=255) cAAGCCGCTAACTTTTCGTTAGCGACttttttttt > 1:13503693/1‑35 (MQ=255) aaGCCGCTAACTTTTCGTTAGCGGCtttttttttt > 1:2430966/1‑34 (MQ=255) aaGCCGCTAACTTTTCGTTAGCGGCtttttttttt > 1:3236574/1‑34 (MQ=255) aaGCCGCTAACTTTTCGTTAGCGGCTTTTTTTTTg < 1:6738152/35‑1 (MQ=255) aaGCCGCTAACTTTTAGTTAGCGGCTTTTTTTTTg < 1:10061142/35‑1 (MQ=255) ggcaataatcgcggttaattCGgcttttttttttt < 1:8636261‑M1/15‑3 (MQ=255) aGCCGCTAACTTTTCGTTAGCGACTTTTTTTTTGt < 1:20327418/35‑1 (MQ=255) aGCCGC‑AACTTTTCGTTAGCGACTTTTTTTTTGtt > 1:5463120/1‑35 (MQ=37) gCCGCTAACTTTTCGTTAGCGGCTTTTTTTTTTtt > 1:16340801/1‑35 (MQ=255) gCCGCTAACTTTTCGTTAGCGGCTTTTTTTTTGtt < 1:17617428/35‑1 (MQ=255) gCCGCTAACTTTTCGTTAGCGACTTTTTTTTTGtt > 1:11104609/1‑35 (MQ=255) gCCGCTAACTTTTCGTTAGCGACTTTTTTTTTGtt < 1:11818772/35‑1 (MQ=255) ccGCTAACTTTTCGTTAGCGGCTTTTTTTTTGTTc < 1:15199448/35‑1 (MQ=255) ccGCTAACTTTTCGTTAGCGACTTTTTTTTTGTTc > 1:2796091/1‑35 (MQ=255) caataatcgcggttaattCGGCTTTTTTTTTTTTc < 1:400980‑M1/17‑1 (MQ=255) cGCTAACTTTTCGTTAGCGGCTTTTTTTTTTtttt > 1:20178019/1‑33 (MQ=38) cGCTAACTTTTCGTTAGCGGCTTTTTTTTTGTTCa < 1:15605052/35‑1 (MQ=255) cGCTAACTTTTCGTTAGCGACTTTTTTTTTGTTCa > 1:8057876/1‑35 (MQ=255) cGCTAACTTTTCGTTAGCGACTTTTTTTTTGTTCa < 1:19714470/35‑1 (MQ=255) aataatcgcggttaattCGGCTTTTTTTTTTTtcc < 1:16092123‑M1/18‑2 (MQ=255) gCTAACTTTTCGTTAGCGACTTTTTTTTTGTTCAg < 1:9639550/35‑1 (MQ=255) cTAACTTTTCGTTAGCGGCTTTTTTTTTTTTCAGc > 1:1739134/1‑35 (MQ=255) cTAACTTTTCGTTAGCGGCTTTTTTTTTGTTGAGc < 1:17111001/35‑1 (MQ=255) cTAACTTTTCGTTAGCGAC‑‑TTTTTTTGTTCAGCaa < 1:3278988/35‑1 (MQ=21) tAACTTTTCGTTAGCGGCTTTTTTTTTTTTTAGCa > 1:13185316/1‑35 (MQ=37) tAACTTTTCGTTAGCGGCTTTTTTTTTGTTCAGCa < 1:1029311/35‑1 (MQ=255) tAACTTTTCGTTAGCGACTTTTTTTTTGTTCAGCa < 1:18885967/35‑1 (MQ=255) tAACTTTTCGTTAGCGACTTTTTTTTTGTTCAGCa < 1:924871/35‑1 (MQ=255) atcTTTTCGTTAGCGGCTTTTTTTTTGTTCAGCaa < 1:11565504/33‑1 (MQ=255) aaCTTTTCGTTAGCTGCTTTTTTTTTGTTCAGCaa > 1:7011866/1‑35 (MQ=255) aaCTTTTCGTTAGCGACTTTTTTTTTGTTCATCaa > 1:5562415/1‑35 (MQ=38) aCTTTTCGTTAGCGGCTTTTTTTTT‑TTTAGCaaac > 1:19142394/1‑33 (MQ=21) aCTTTTCGTTAGCGACTTTTTTTTTGTTCAGCAAc < 1:13383075/35‑1 (MQ=255) cTTTTCGTTAGCGACTTTTTTTTTGTTCAGCAACg > 1:1086708/1‑35 (MQ=255) ttttCGTTAGCGGCTTTTTTTTTGTTCAGCAACGc < 1:18093844/35‑1 (MQ=255) ttttCGTTAGCGGCTTTTTTTTTGTTCAGCAACGc < 1:4024713/35‑1 (MQ=255) ttttCGTTAGCGGCTTTTTTTTTGTTCAGCAACGc < 1:3079814/35‑1 (MQ=255) tttCGTTAGCGGCTTTTTTTTTTTTTTGCAACGCa > 1:12938480/1‑35 (MQ=25) tttCGTTAGCGACTTTTTTTTTGTTCAGCAACGCa < 1:8306201/35‑1 (MQ=255) ttCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCAc < 1:4448331/35‑1 (MQ=255) ttCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCAc < 1:6321255/35‑1 (MQ=255) ttCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCAc < 1:14534151/35‑1 (MQ=255) tCGTTAGCGACTTTTTTTTTGTTCAGCAACGCACt > 1:14326701/1‑35 (MQ=255) tCGTTAGCGACTTTTTTTTTGTTCAGCAACGCACt < 1:16185490/35‑1 (MQ=255) tCGTTAGCGACTTTTTTTTTGTTCAGCAACGCACt < 1:16854952/35‑1 (MQ=255) tCGTTAGCGACTTTTTTTTTGTTCAGCAACGAACt > 1:11370712/1‑35 (MQ=37) cGTTAGCGGCTTTTTTTTTGTTCAGCAACGCACTa < 1:14748810/35‑1 (MQ=255) cGTTAGCGACTTTTTTTTTGTTCAGCAACGCACTa < 1:20572063/35‑1 (MQ=255) cGTTAGCGACTTTTTTTTTGTTCAGCAACGCACTa < 1:7145175/35‑1 (MQ=255) gTTAGCGGC‑TTTTTTTTGTTCAGCAACGCACTAcc < 1:759106/35‑1 (MQ=37) tAGCGACTTTTTTTTTGTTCAGCAACGCACTACCa > 1:16387864/1‑35 (MQ=255) tAGCGACTTTTTTTTTGTTCAGCAACGCACTACCa < 1:18896293/35‑1 (MQ=255) ngCGGTNTTTTTTTTGTTCAGCAACGCACTACCAt < 1:5204116/34‑1 (MQ=37) aGCGGCTTTTTTTTTGTTCAGCAACGCACTACCAt < 1:19669074/35‑1 (MQ=255) aGCGACTTTTTTTTTGTTCAGCAACGCACTACGAt < 1:7936319/35‑1 (MQ=25) aGCGACTTTTTTTTTGTTCAGCAACGCACTACCAt < 1:12558159/35‑1 (MQ=255) gctGCTTTTTTTTTGTTCAGCAACGCACTACCATa < 1:5399452‑M1/32‑1 (MQ=255) gCGGCTTTTTTTTTTTTCAGCAACGCACTACCATa > 1:20135222/1‑35 (MQ=255) CGACTTTTTTTTTGTTCAGCAACGCACTACCATAc > 1:18682827‑M1/1‑35 (MQ=255) GGCTTTTTTTTTGTTCAGCAACGCACTACCATACt > 1:18188522‑M1/1‑35 (MQ=255) GGCTTTTTTTTTGTTCAGCAACGCACTACCATACt < 1:17002942‑M1/35‑1 (MQ=255) GGCTTTTTTTTTGTTCAGCAACGCACTACCATACt < 1:14628923‑M1/35‑1 (MQ=255) | AACTCTTTTACAAGCCGCTAACTTTTCGTTAGCGGCTTTTTTTTTGTTCAGCAACGCACTACCATACTT > REL606/1691476‑1691544 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |