New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2750665 =112 (1.090)16 (0.250) 4/30 NT 22.7% coding (1468/2079 nt) fhlA DNA‑binding transcriptional activator
?REL606 3792209 = 39 (0.610)coding (315/414 nt) ECB_03532 hypothetical protein

Only 100 of 141 total aligned reads displayed.

GTTCAAACTCCTGTTCCTGCAATACACGCAGCAACTTCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2750707‑2750665
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcggctgGGTGGGGGAAATCGATCCATATGGTTAT  >  REL606/3792209‑3792236
                                                                       
GTTCAAACTCCTGTTCCTGCAATACACGCAGCAAC                                      >  1:9876853/1‑35
GTTCAAACTCCTGTTCCTGCAATACACGCAGCAAC                                      >  1:14358186/1‑35
GTTCAAACTCCTGTTCCTGCAATACACGCAGCAAC                                      >  1:7931269/1‑35
GTTCAAACTCCTGTTCCTGCAATACACGCAGCAAC                                      >  1:19952539/1‑35
GTTCAAACTCCTGTTCCTGCAATACACGCAGCAAC                                      >  1:19976064/1‑35
GTTCAAACTCCTGTTCCTGCAATACACGCAGCAAC                                      >  1:4518535/1‑35
GTTCAAACTCCTGTTCCTGCAATACACGCAGCAAC                                      >  1:12360750/1‑35
GTTCAAACTCCTGTTCCTGCAATACACGCAGCAAC                                      <  1:4276115/35‑1
GTTCAAACTCCTGTTCCTGCAATACACGCAGCAAC                                      <  1:2704033/35‑1
 TTCAAACTCCTGTTCCTGCAATACACGCAGCAACT                                     >  1:6661819/1‑35
 TTCAAACTCCTGTTCCTGCAATACACGCAGCAACT                                     >  1:6103522/1‑35
 TTCAAACTCCTGTTCCTGCAATACACGCAGCAACT                                     >  1:18102224/1‑35
 TTCAAACTCCTGTTCCTGCAATACACGCAGCAACT                                     >  1:8580495/1‑35
 TTCAAACTCCTGTTCCTGCAATACACGCAGCAACT                                     >  1:4006103/1‑35
 TTCAAACTCCTGTTCCTGCAATACACGCAGCAACT                                     >  1:2853155/1‑35
 TTCAAACTCCTGTTCCTGCAATACACGCAGCAACT                                     >  1:10888129/1‑35
 TTCAAACTCCTGTTCCTGCAATACACGCAGCAACT                                     <  1:972062/35‑1
  TCAAACTCCTGTTCCTGCAATACACGCAGCAACTT                                    <  1:15451130/35‑1
  TCAAACTCCTGTTCCTGCAATACACGCAGCAACTT                                    >  1:10062909/1‑35
  TCAAACTCCTGTTCCTGCAATACACGCAGCAACTT                                    >  1:13992208/1‑35
  TCAAACTCCTGTTCCTGCAATACACGCAGCAACTT                                    >  1:8013877/1‑35
  TCAAACTCCTGTTCCTGCAATACACGCAGCAACTT                                    >  1:10815644/1‑35
  TCAAACTCCTGTTCCTGCAATACACGCAGCAACTT                                    >  1:2779831/1‑35
  TCAAACTCCTGTTCCTGCAATACACGCAGCAACTT                                    >  1:12284431/1‑35
  TCAAACTCCTGTTCCTGCAATACACGCAGCAACTT                                    >  1:11817714/1‑35
   CAAACTCCTGTTCCTGCAATACACGCAGCAACTTC                                   >  1:499501/1‑35
   CAAACTCCTGTTCCTGCAATACACGCAGCAACTTC                                   <  1:13608423/35‑1
   CAAACTCCTGTTCCTGCAATACACGCAGCAACTTC                                   <  1:10797440/35‑1
   CAAACTCCTGTTCCTGCAATACACGCAGCAACTTC                                   <  1:13131063/35‑1
   CAAACTCCTGTTCCTGCAATACACGCAGCAACTTC                                   >  1:10656626/1‑35
   CAAACTCCTGTTCCTGCAATACACGCAGCAACTTC                                   >  1:19258515/1‑35
   CAAACTCCTGTTCCTGCAATACACGCAGCAACTTC                                   <  1:15098202/35‑1
   CAAACTCCTGTTCCTGCAATACACGCAGCAACTTC                                   >  1:15635260/1‑35
    AAACTCCTGTTCCTTCAATACACGCAGCAACTTCG                                  >  1:4228700/1‑35
    AAACTCCTGTTCCTGCAATACACGCAGCAACTTCG                                  >  1:8527836/1‑35
    AAACTCCTGTTCCTGCAATACACGCAGCAACTTCG                                  >  1:5192397/1‑35
    AAACTCCTGTTCCTGCAATACACGCAGCAACTTCG                                  <  1:18866550/35‑1
    AAACTCCTGTTCCTGCAATACACGCAGCAACTTCG                                  <  1:14856463/35‑1
    AAACTCCTGTTCCTGCAATACACGCAGCAACTTCG                                  >  1:17240007/1‑35
    AAACTCCTGTTCCTGCAATACACGCAGCAACTTCG                                  >  1:16665397/1‑35
    AAACTCCTGTTCCTGCAATACACGCAGCAACTTCG                                  >  1:16276594/1‑35
    AAACTCCTGTTCCTGCAATACACGCAGCAACTTCG                                  >  1:15414437/1‑35
    AAACTCCTGTTCCTGCAATACACCCAGCAACTTCG                                  >  1:15186430/1‑35
    AAACTCCTGTTACTGCAATACACGCAGCAACTTCG                                  <  1:11634818/35‑1
     AACTCCTGTTCCTGCAATACACGCAGCAACTTCGG                                 <  1:17445409/35‑1
     AACTCCTGTTCCTGCAATACACGCAGCAACTTCGG                                 >  1:6079342/1‑35
     AACTCCTGTTCCTGCAATACACGCAGCAACTTCGG                                 <  1:6015304/35‑1
     AACTCCTGTTCCTGCAATACACGCAGCAACTTCGG                                 >  1:3095887/1‑35
     AACTCCTGTTCCTGCAATACACGCAGCAACTTCGG                                 >  1:8660839/1‑35
     AACTCCTGTTCCTGCAATACACGCAGCAACTTCGG                                 <  1:12240190/35‑1
     AACTCCTGTTCCTGCAATACACGCAGCAACTTCGG                                 <  1:12457164/35‑1
     AACTCCTGTTCCTGCAATACACGCAGCAACTTAGG                                 <  1:3675672/35‑1
      ACTCCTGTTCCTGCAATACACGCAGCAACTTCGGC                                <  1:9915759/35‑1
      ACTCCTGTTCCTGCAATACACGCAGCAACTTCGGC                                <  1:10056374/35‑1
      ACTCCTGTTCCTGCAATACACGCAGCAACTTCGGC                                >  1:347642/1‑35
      ACTCCTGTTCCTGCAATACACGCAGCAACTTCGGC                                >  1:8675222/1‑35
      ACTCCTGTTCCTGCAATACACGCAGCAACTTCGGC                                <  1:20451802/35‑1
      ACTCCTGTTCCTGCAATACACGCAGCAACTTCGGC                                <  1:20144766/35‑1
      ACTCCTGTTCCTGCAATACACGCAGCAACTTCGGC                                >  1:19685068/1‑35
      ACTCCTGTTCCTGCAATACACGCAGCAACTTCGGC                                >  1:7856720/1‑35
       CTCCTGTTCCTGCAATACACGCAGCAACTTCGGCT                               >  1:3437497/1‑35
        cCCTGTCCCTGCAATACACGCAGCAACTTCGGCTG                              <  1:629100/34‑1
        TCCTGTTCCTGCAATACACGCAGCAACTTCGGCTG                              >  1:4683487/1‑35
        TCCTGTTCCTGCAATACACGCAGCAACTTCGGCTG                              <  1:4249737/35‑1
        TCCTGTTCCTGCAATACACGCAGCAACTTCGGCTG                              <  1:15827653/35‑1
        TCCTGTTCCTGCAATACACGCAGCAACTTCGGCTG                              >  1:3653715/1‑35
        TCCTGTTCCTGCAATACACGCAGCAACTTCGGCTG                              >  1:14862602/1‑35
         CCTGTTCCTGCAATACACGCAGCAACTTCGGCTGG                             >  1:2850767/1‑35
         CCTGTTCCTGCAATACACGCAGCAACTTCGGCTGG                             >  1:16245809/1‑35
          CTGTTCCTGCAATACACGCAGCAACTTCGGCTttt                            >  1:8262032/1‑32
          CTGTTCCTGCAATACACGCAGCAACTTCGGCTGGG                            >  1:12678453/1‑35
           TGTTCCTGCAATACACGCAGCAACTTCGGCTGGGg                           >  1:10015394/1‑34
           TGTTCCTGCAATACACGCAGCAACTTCGGCTGGGg                           >  1:13227504/1‑34
           TGTTCCTGCAATACACGCAGCAACTTCGGCTGGGg                           >  1:18518801/1‑34
            GTTCCTGCAATACACGCAGCAACTTCGGCTGGGgg                          >  1:9537169/1‑33
            GTTCCTGCAATACACGCAGCAACTTCGGCTGGGgg                          >  1:16889909/1‑33
            GTTCCTGCAATACACGCAGCAACTTCGGCTGGGgg                          >  1:5513499/1‑33
            GTTCCTGCAATACACGCAGCAACTTCGGCTGGGgg                          >  1:4080564/1‑33
            GTTCCTGCAATACACGCAGCAACTTCGGCTGGGgg                          >  1:19564377/1‑33
            GTTCCTGCAATACACGCAGCAACTTCGGCTGGGgg                          >  1:20240763/1‑33
            GTTCCTGCAATACACGCAGCAACTTCGGCTGGGgg                          >  1:2466318/1‑33
            GTTCCTGCAATACACGCAGCAACTTCGGCTGGGac                          >  1:14853295/1‑33
             TTCCTGCAATACACGCAGCAACTTCGGCTGGGGGG                         >  1:16037633/1‑35
             TTCCTGCAATACACGCAGCAACTTCGGCTGGGGGG                         >  1:2765371/1‑35
             TTCCTGCAATACACGCAGCAACTTCGGCTGGGGGG                         >  1:11644745/1‑35
             TTCCTGCAATACACGCAGCAACTTCGGCTGGGGGG                         >  1:10455857/1‑35
              TCCTGCAATACACGCAGCAACTTCGGCTGGGGGGG                        >  1:1839989/1‑35
              TCCTGCAATACACGCAGCAACTTCGGCTGGGGGGG                        >  1:10416438/1‑35
               CCTGCAATACACGCAGCAACTTCGGCTGGGGGGGc                       >  1:6666308/1‑34
               CCTGCAATACACGCAGCAACTTCGGCTGGGGGGGG                       >  1:7629614/1‑35
               CCTGCAATACACGCAGCAACTTCGGCTGGGGGGGG                       >  1:13763667/1‑35
                CTGCAATACACGCAGCAACTTCGGCTGGGGGGGGG                      >  1:15418527/1‑35
                CTGCAATACACGCAGCAACTTCGGCTGGGGGGGGG                      >  1:7583785/1‑35
                CTGCAATACACGCAGCAACTTCGGCTGGGGGGGGG                      >  1:340565/1‑35
                 TGCAATACACGCAGCAACTTCGGCTGGGGGGGGGg                     >  1:6476069/1‑34
                 TGCAATACACGCAGCAACTTCGGCTGGGGGGGGGg                     >  1:14210332/1‑34
                 TGCAATACACGCAGCAACTTCGGCTGGGGGGGGGg                     >  1:13096465/1‑34
                 TGCAATACACGCAGCAACTTCGGCTGGGGGGGGGg                     >  1:11034453/1‑34
                                  CTTCGGCTGGGTGGGGGAAATCGATCCATATGGTT    <  1:13310591/35‑1
                                    TCGGCTGGGTGGGGGAAATCGATCCATATGGTTAT  <  1:19013258/35‑1
                                                                       
GTTCAAACTCCTGTTCCTGCAATACACGCAGCAACTTCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2750707‑2750665
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcggctgGGTGGGGGAAATCGATCCATATGGTTAT  >  REL606/3792209‑3792236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.