New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1036060 = | 100 (0.970) | 19 (0.190) | 7/46 | NT | 20.0% | intergenic (+32/+44) | ycbG/ompA | hypothetical protein/outer membrane protein A (3a;II*;G;d) |
? | REL606 | 3483139 = | 59 (0.570) | coding (1455/2706 nt) | malT | transcriptional regulator MalT |
Only 100 of 204 total aligned reads displayed.
TAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCA > REL606/1036026‑1036094 | tAACTGACGAAAGTCAGTTCAATTTACTAAAGGCa < 1:20471441/35‑1 (MQ=255) tAACTGACGAAAGTCAGTTCAATTTACTAAAGGCa < 1:8500605/35‑1 (MQ=255) tAACTGACGAAAGTCAGTTCAATTTACTAAAGGCa > 1:8759400/1‑35 (MQ=255) tAACTGAAGAAAGTCAGTTCAATTTACTAAAGGCa < 1:13734446/35‑1 (MQ=255) cacccagcaccgaggttgccacaatgcggctaaaa < 1:19654103‑M1/2‑1 (MQ=255) cacccagcaccgaggttgccacaatgcggctaaaa < 1:17089994‑M1/2‑1 (MQ=255) aaCTGACGAAAGTCAGTTCAATTTACTAAAGGCaa < 1:20611562/35‑1 (MQ=255) aaCTGACGAAAGTCAGTTCAATTTACTAAAGGCaa < 1:20184889/35‑1 (MQ=255) aaCTGACGAAAGTCAGTTCAATTTACTAAAGGCaa < 1:1905324/35‑1 (MQ=255) acccagcaccgaggttgccacaatgcggctaaaaa < 1:17952083‑M1/3‑1 (MQ=255) aCTGACGAAAGTCAGTTCAATTTACTAAAGGCaaa < 1:5613988/35‑1 (MQ=255) aCTGACGAAAGTCAGTTCAATTTACTAAAGGCaaa > 1:2457051/1‑35 (MQ=255) cccagcaccgaggttgccacaatgcggctaaaaaa < 1:15034236‑M1/4‑1 (MQ=255) cTGACGAAAGTCAGTTCAATTTACTAAAGGCaaaa > 1:2543785/1‑35 (MQ=255) tGAGGAAAGTCAGTTCAATTTACTAAAGGCaaaaa > 1:334515/1‑35 (MQ=255) tGACGAAAGTCAGTTCAATTTACTAAAGGCaaaaa > 1:1305740/1‑35 (MQ=255) tGACGAAAGTCAGTTCAATTTACTAAAGGCaaaaa > 1:2757330/1‑35 (MQ=255) gACGAAAGTCAGTTCAATTTACTAAAGGCaaaaaa < 1:9645765/35‑1 (MQ=255) aCGAAAGTCAGTTCAATTTACTAAAGGCaaaaaaa > 1:18168499/1‑35 (MQ=255) aCGAAAGTCAGTTCAATTTACTAAAGGCaaaaaaa > 1:1938052/1‑35 (MQ=255) cGAAAGTCAGTTCAATTTACTAAAGGCaaaaaaaa < 1:14828981/35‑1 (MQ=255) cGAAAGTCAGTTCAATTTACTAAAGGCaaaaaaaa > 1:7200272/1‑35 (MQ=255) cGAAAGTCAGTTCAATTTACTAAAGGCaaaaaaaa > 1:12732283/1‑35 (MQ=255) gAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAc > 1:5178929/1‑35 (MQ=255) gAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAc > 1:2692412/1‑35 (MQ=255) gAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAc < 1:11423806/35‑1 (MQ=255) caccgaggttgccacaatgcggctaaAAAAAAAAc < 1:2638718‑M1/9‑1 (MQ=255) accgaggttgccacaatgcggctaaAAAAACAacg < 1:13624980‑M1/10‑2 (MQ=255) accgaggttgccacaatgcggctaaAAAAACAAcc < 1:9473417‑M1/10‑1 (MQ=255) aaaGTCAGTTCAATTTACTAAAGGCAAAAAAAAcc > 1:18716610/1‑35 (MQ=255) aaaGTCAGTTCAATTTACTAAAGGCAAAAAAAAcc > 1:9167751/1‑35 (MQ=255) aaaGTCAGTTCAATTTACTAAAGGCAAAAAAAAcc > 1:15373131/1‑35 (MQ=255) aaaGTCAGTTCAATTTACTAAAGGCAAAAAAAAcc < 1:15542499/35‑1 (MQ=255) ccgaggttgccacaatgcggctaaAAAAAAAAccc < 1:18354127‑M1/11‑1 (MQ=255) aaGTCAGTTCAATTTACTAAAGGCAAAAAAAACCc < 1:15252871‑M2/35‑2 (MQ=255) aaGTCAGTTCAATTTACTAAAGGCAAAAAAAACCc < 1:15387150‑M2/35‑2 (MQ=255) aaGTCAGTTCAATTTACTAAAGGCAAAAAAAACCc > 1:8127690‑M2/1‑34 (MQ=255) cgaggttgccacaatgcggctaaAAAAAAAacccg < 1:5120000‑M1/12‑2 (MQ=255) cgaggttgccacaatgcggctaaAAAAAAAAaccc < 1:13993658‑M1/12‑1 (MQ=255) aGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC < 1:16973270‑M1/35‑1 (MQ=255) aGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC < 1:19956978‑M1/35‑1 (MQ=255) aGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC > 1:4581651‑M1/1‑35 (MQ=255) aGTAAGTTCAATTTACTAAAGGCAAAAAAAACCCC < 1:20563512‑M1/35‑1 (MQ=255) gaggttgccacaatgcggctaaAAAAAAAACCCCg < 1:5047690‑M1/13‑1 (MQ=255) gTCAGTTCAATTTACTAAAGGCAAAAAAAACCccg < 1:1575650‑M2/35‑4 (MQ=255) gTCAGTTCAATTTACTAAAGGCAAAAAAAACCccg > 1:11359193‑M2/1‑32 (MQ=255) gTCAGTTCAATTTACTAAAGGCAAAAAAAACCccg > 1:8008890‑M2/1‑32 (MQ=255) tCAGTTCAATTTACTAAAGGCAAAAAAAACCccgc > 1:7378951‑M2/1‑31 (MQ=255) ggttgccacaatgcggctaaAAAAAAAACCCcgcg < 1:8441329‑M1/15‑2 (MQ=255) cAGTTCAATTTACTAAAGGCAAAAAAAACCCCgca > 1:14209868/1‑35 (MQ=255) aaGTTCAATTTACTAAAGGCAAAAAAAACCCCgca < 1:12478444/34‑1 (MQ=255) aGTTCAATTTACTAAAGGCAAAAAAAACCCCgcag > 1:2296750/1‑35 (MQ=255) aGTTCAATTTACTAAAGGCAAAAAAAACCCCgcag > 1:11379077/1‑35 (MQ=255) aGTTCAATTTACTAAAGGCAAAAAAAACCCCgcag > 1:16639227/1‑35 (MQ=255) gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc < 1:10910856/35‑1 (MQ=255) gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc < 1:8223495/35‑1 (MQ=255) gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc < 1:3761958/35‑1 (MQ=255) ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca < 1:6384241/35‑1 (MQ=255) ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca < 1:16854840/35‑1 (MQ=255) ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca < 1:7883378/35‑1 (MQ=255) ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca < 1:12200025/35‑1 (MQ=255) tCAATTTACTAAAGGCAAAAAAAACCCCGcagcag < 1:14451638/35‑1 (MQ=255) cAATTTCCAAAAGGAAAAAAAACCCCCGCagcagc < 1:18657580/35‑1 (MQ=19) cAATTTACTAAAGGCAAAAAAAACCCCGCagcagc < 1:18289317/35‑1 (MQ=255) aaTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCg < 1:828849/35‑1 (MQ=255) aaTTTACTAAAGGCAAAAAAAACACCGCAGCAGCg < 1:803175/35‑1 (MQ=255) aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCgg > 1:3910496/1‑35 (MQ=255) tttACTAAAGGCAAAAAAAACCCCGCAGCAGCggg > 1:20420935/1‑35 (MQ=255) ttACTAAAGGCAAAAAAAACCCCGCAGCAGCgggg > 1:3375551/1‑35 (MQ=255) ttACTAAAGGCAAAAAAAACCCCGCAGCAGCgggg < 1:11188469/35‑1 (MQ=255) tACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGt > 1:941236/1‑35 (MQ=255) tACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGt < 1:1637030/35‑1 (MQ=255) tACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGt > 1:14398195/1‑35 (MQ=255) aCTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGtt < 1:4894287/35‑1 (MQ=255) cTAAAGGCAAAAAAAACCCCGCAGCAGCGTGGgtt > 1:9784866/1‑35 (MQ=37) cTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGttt > 1:19113832/1‑35 (MQ=255) tAAAGGCAAAAAAATCCCCGCAGCAGCGGGGtttt < 1:20038400/35‑1 (MQ=255) tAAAGGCAAAAAAAACCCCGCAGCAGCGGGGtttt > 1:10047213/1‑35 (MQ=255) tAAAGGCAAAAAAAACCCCGAAGCAGCGGGGtttt < 1:13300148/35‑1 (MQ=255) tAAAGGCAAAAAAAACCACGCAGCAGCGGGGtttt < 1:4393024/35‑1 (MQ=255) aaaGGCAAAAAAAACCCCGCAGCAGCTGGGttttt > 1:3210301/1‑35 (MQ=255) aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt > 1:11777366/1‑35 (MQ=255) aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt < 1:6719121/35‑1 (MQ=255) aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt > 1:13526826/1‑35 (MQ=255) aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt < 1:18778050/35‑1 (MQ=255) aaGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTc > 1:13913022/1‑35 (MQ=255) aaGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTc > 1:14508070/1‑35 (MQ=255) ccgcaAAAAAAACCCCccagccataaagcgatgcc < 1:10323102‑M1/33‑20 (MQ=255) ggCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTa > 1:6129370/1‑35 (MQ=255) gCAAAAAAAACCCCccagccataaagcgatgccgc < 1:5987452‑M1/35‑22 (MQ=255) ccaAAAAAACCCccgccagaaatcagggcaaagat > 1:6125878‑M2/2‑12 (MQ=255) ccaAAAAAAACCCCccagccataaagcgatgccgc < 1:4701778‑M1/34‑22 (MQ=255) acaAAAAAAACCCCccagccataaagcgatgccgc < 1:10539573‑M1/34‑22 (MQ=255) cAAAAAAACCCCCagccgcgcggcgcaggtgaagt < 1:16884076‑M1/35‑23 (MQ=255) cAAAAAAACCCCCagccgcgcggcgcaggtgaagt < 1:6571056‑M1/35‑23 (MQ=255) cAAAAAAAACCccgccagaaatcagggcaaagata > 1:4744627‑M2/1‑11 (MQ=255) cAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTAcc > 1:10318546/1‑35 (MQ=255) aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa < 1:16044588/35‑1 (MQ=255) aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa < 1:9718080/35‑1 (MQ=255) aaaaaaaaCCCAGCAGCAGCGGGGTTTTTCTACCa < 1:8858472/35‑1 (MQ=255) | TAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCA > REL606/1036026‑1036094 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |