Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 547,700 | Δ2,651 bp | 100% | IS1‑mediated | [nmpC]–[ybcU] | [nmpC], ybcR, ybcS, ybcT, [ybcU] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 546953–547700 | 550350 | 2651–3398 | 55 [48] | [7] 94 | [insB‑6]–[ybcU] | [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, [ybcU] |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 547699 | NA (NA) | 59 (0.570) | 34/48 | NT | 93.7% | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 550351 = | 4 (0.040) | coding (12/294 nt) | ybcU | predicted lipoprotein |
TGTAATAAGCATTGCCAGAGCGGCAGAAAACAACATTTTTTTCATCTTATTATCCTGCATTGTTAAAA > REL606/550318‑550385 | tGTAATAAGCATTGCCAGAGCGGCAGAAAacaaca > 1:10716020/1‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCa < 1:16639672‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccCa < 1:19090544‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccCa < 1:670116‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccCa < 1:20218424‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccCa < 1:14389154‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccCa < 1:561119‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccCa > 1:2683632‑M2/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCa < 1:11746488‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccCa > 1:3034328‑M2/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCa > 1:3799628‑M2/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCa > 1:10609978‑M2/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCa < 1:4511867‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccCa < 1:14457173‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcacaCa < 1:9220841‑M2/2‑1 (MQ=255) atacactaaatcagtaagttggcagcatcaccCAt > 1:6999817‑M2/33‑35 (MQ=255) atacactaaatcagtaagttggcagcatcaccCAt > 1:19336272‑M2/33‑35 (MQ=255) tacactaaatcagtaagttggcagcatcaccCatg > 1:7082398‑M2/32‑34 (MQ=255) tacactaaatcagtaagttggcagcatcaccCAtt < 1:6522136‑M2/4‑1 (MQ=255) tacactaaatcagtaagttggcagcatcaccCAtt < 1:7148470‑M2/4‑1 (MQ=255) tacactaaatcagtaagttggcagcatcaccCAtt > 1:4200401‑M2/32‑35 (MQ=255) acactaaatcagtaagttggcagcatcaccCAttt < 1:477804‑M2/5‑1 (MQ=255) acactaaatcagtaagttggcagcatcaccCAttt < 1:10049345‑M2/5‑1 (MQ=255) cactaaatcagtaagttggcagcatcaccCAtttt > 1:2350079‑M2/30‑35 (MQ=255) cactaaatcagtaagttggcagcatcaccCAtttt < 1:17801198‑M2/6‑1 (MQ=255) cactaaatcagtaagttggcagcatcaccCAtttt < 1:9063694‑M2/6‑1 (MQ=255) ctaaatcagtaagttggcagcatcaccCAtttttt > 1:6648175‑M2/28‑35 (MQ=255) ctaaatcagtaagttggcagcatcaccCAtttttt < 1:11218900‑M2/8‑1 (MQ=255) taaatcagtaagttggcagcatcagcCAttttttt < 1:15599576‑M2/9‑1 (MQ=255) taaatcagtaagttggcagcatcaccCAttttttt < 1:18708835‑M2/9‑1 (MQ=255) taaatcagtaagttggcagcatcaccCAttttttt < 1:5470538‑M2/9‑1 (MQ=255) gCATTGCCAGAGCGGCAGAAAACAACATTTTTTTc < 1:19901404/35‑1 (MQ=255) aaatcagtaagttggcagcatcaccCATTTTTTTc > 1:20396147‑M2/26‑35 (MQ=255) aaatcagtaagttggcagcatcaccCATTTTTTTc > 1:12602237‑M2/26‑35 (MQ=255) cATTGCCAGAGCGGCAGAAAACAACATTTTTTTCa < 1:20023630/35‑1 (MQ=255) aatcagtaagttggcagcatcaccCATTTTTTTCa > 1:12250178‑M2/25‑35 (MQ=255) aatcagtaagttggcagcatcaccAATTTTTTTCa < 1:12836556‑M2/11‑1 (MQ=255) atcagtaagttggcagcatcaccCATTTTTTTCAt < 1:1432407‑M2/12‑1 (MQ=255) atcagtaagttggcagcatcaccCATTTTTTTCAt < 1:1104505‑M2/12‑1 (MQ=255) atcagtaagttggcagcatcaccCATTTTTTTCAt > 1:18133760‑M2/24‑35 (MQ=255) tcagtaagttggcagcatcaccCATTTTTTTCATc > 1:6910058‑M2/23‑35 (MQ=255) tcagtaagttggcagcatcaccCATTTTTTTCATc < 1:4882655‑M2/13‑1 (MQ=255) tcagtaagttggcagcatcaccCATTTTTTTCATc > 1:18967033‑M2/23‑35 (MQ=255) tcagtaagttggcagcatcaccCATTTTTTTCATc > 1:4044685‑M2/23‑35 (MQ=255) tcagtaagttggcagcatcaccCATTTTTTTCATc > 1:10598480‑M2/23‑35 (MQ=255) cagtaagttggcagcatcaccCATTTTTTTCATCt < 1:19044861‑M2/14‑1 (MQ=255) cagtaagttggcagcatcaccCATTTTTTTCATCt < 1:653772‑M2/14‑1 (MQ=255) cagtaagttggcagcataaccCATTTTTTTCATCt < 1:6249004‑M2/14‑1 (MQ=255) gCCAGAGCGGCAGAAAACAACATTTTTTTCATCtt < 1:3196388/35‑1 (MQ=255) agtaagtttgcagcatcaccCATTTTTTTCATCtt > 1:1699091‑M2/21‑35 (MQ=255) agtaagttggcagcatcaccCATTTTTTTCATCtt < 1:12901107‑M2/15‑1 (MQ=255) taagttggcagcatcaccCATTTTTTTCATCttat > 1:13470782‑M2/19‑35 (MQ=255) taagttggcagcataaccCATTTTTTTCATCttat < 1:8056764‑M2/17‑1 (MQ=255) aagttggcagcatcaccCATTTTTTTCATCttatt > 1:2861219‑M2/18‑35 (MQ=255) aagttggcagcatcaccCATTTTTTTCATCttatt < 1:3673967‑M2/18‑1 (MQ=255) aagttggcagcatcaccCATTTTTTTCATCttatt > 1:1398461‑M2/18‑35 (MQ=255) agttggcagcatcaccCATTTTTTTCATCttatta > 1:2798034‑M2/17‑35 (MQ=255) agttggcagcatcaccCATTTTTTTCATCttatta > 1:6731446‑M2/17‑35 (MQ=255) agttggcagcatcaccCATTTTTTTCATCttatta > 1:6748301‑M2/17‑35 (MQ=255) gttggcagcatcaccCATTTTTTTCATCTtattat < 1:6050896‑M2/20‑1 (MQ=255) gttggcagcatcaccCATTTTTTTCATCTtattat < 1:3845981‑M2/20‑1 (MQ=255) gttggcagcatcaccCATTTTTTTCATCTtattat > 1:14832810‑M2/16‑35 (MQ=255) tggcagcatcaccCATTTTTTTCATCTTATTATcc > 1:2571021‑M2/14‑35 (MQ=255) tggcagcatcaccCATTTTTTTCATCTTATTATcc < 1:18849183‑M2/22‑1 (MQ=255) ggcagcatcaccCATTTTTTTCATCTTATTATCCt > 1:14876006‑M2/13‑35 (MQ=255) ggcagcatcaccCATTTTTTTCATCTTATTATCCt > 1:4022064‑M2/13‑35 (MQ=255) ggcagcatcaccCATTTTTTTCATCTTATTATCCt < 1:803152‑M2/23‑1 (MQ=255) ggcagcatcaccCATTTTTTTCATCTTATTATCCt < 1:20201317‑M2/23‑1 (MQ=255) gcagcatcaccCATTTTTTTCATCTTATTATCCTg < 1:3733042‑M2/24‑1 (MQ=255) gcagcatcaccCATTTTTTTCATCTTATTATCCTg > 1:14404573‑M2/12‑35 (MQ=255) gcagcatcaccCATTTTTTTCATCTTATTATCCTg > 1:15302191‑M2/12‑35 (MQ=255) gcagcatcaccCATTTTTTTCATCTTATTATCCTg < 1:18509552‑M2/24‑1 (MQ=255) cagcatcaccCATTTTTTTCATCTTATTATCCTGc < 1:7342326‑M2/25‑1 (MQ=255) cagcatcaccCATTTTTTTCATCTTATTATCCTGc > 1:8293703‑M2/11‑35 (MQ=255) cagcatcaccAATTTTTTTCATCTTATTATCCTGc < 1:741897‑M2/25‑1 (MQ=255) agcatcaccCATTTTTTTCATCTTATTATCCTGCa > 1:5623083‑M2/10‑35 (MQ=255) agcatcaccCATTTTTTTCATCTTATTATCCTGCa > 1:5563768‑M2/10‑35 (MQ=255) catcaccCATTTTTTTCATCTTATTATCCTGCAtt > 1:1258776‑M2/8‑35 (MQ=255) catcaccCATTTTTTTCATCTTATTATCCTGCAtt < 1:13213322‑M2/28‑1 (MQ=255) catcaccCATTTTTTTCATCTTATTATCCTGCAtt < 1:7238959‑M2/28‑1 (MQ=255) catcaccCATTTTTTTCATCTTATTATCCTGCAtt < 1:15149477‑M2/28‑1 (MQ=255) catcaccCATTTTTTTCATCTTATTATCCTGCAtt < 1:3420287‑M2/28‑1 (MQ=255) catcaccCATTTTTTTCATCTTATTATCCTGCAtt < 1:4314625‑M2/28‑1 (MQ=255) cataccCATTTTTTTCATCTTATTATCCTGCATTg < 1:465853‑M2/29‑1 (MQ=255) atcaccCATTTTTTTCATCTTATTATCCTGCATTg < 1:2245245‑M2/29‑1 (MQ=255) atcaccCATTTTTTTCATCTTATTATCCTGCATTg < 1:12131796‑M2/29‑1 (MQ=255) aaaCAACATTTTTTTCATCTTATTATCCTGCATTg > 1:10803757/1‑35 (MQ=255) tcacgCATTTTTTTCATCTTATTATCCTGCATTGt > 1:14960340‑M2/6‑35 (MQ=255) aacaacATTTTTTTCATCTTATTATCCTGCATTGt > 1:8036022/1‑35 (MQ=255) caccCATTTTTTTCATCTTATTATCCTGCATTGtt < 1:5612833‑M2/31‑1 (MQ=255) ccCATTTTTTTCATCTTATTATCCTGCATTGTTaa < 1:2873911‑M2/33‑1 (MQ=255) ccCATTTTTTTCATCTTATTATCCTGCATTGTTaa < 1:10867519‑M2/33‑1 (MQ=255) caTTTTTTTCATCTTATTATCCTGCATTGTTaaaa > 1:19395556/1‑35 (MQ=255) caTTTTTTTCATCTTATTATCCTGCATTGTTaaaa < 1:9921012/35‑1 (MQ=255) | TGTAATAAGCATTGCCAGAGCGGCAGAAAACAACATTTTTTTCATCTTATTATCCTGCATTGTTAAAA > REL606/550318‑550385 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |