New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1830987 = | 34 (0.330) | 6 (0.080) | 4/36 | NT | 13.9% | coding (221/1359 nt) | ydjE | predicted transporter |
? | REL606 | = 1996585 | 49 (0.640) | coding (1262/1644 nt) | yeeO | predicted multidrug efflux system |
CCTTTACCTCGGCATTAATGTTTGGTTATTTCATCGGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1831026‑1830987 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctcCCTTTGCCGGGGTTATGGCATCGTTTTACACCCA < REL606/1996585‑1996552 CCTTTACCTCGGCATTAATGTTTGGTTATTTCATC < 1:15368754/35‑1 CCTTTACCTCGGCATTAATGTTTGGTTATTTCATC > 1:7637075/1‑35 CCTTTACCTCGGCATTAATGTTTGGTTATTTCATC > 1:2423073/1‑35 CCTTTACCTCGGCATTAATGTTTGGTTATTTCATC > 1:13853189/1‑35 CCTTTACCTCGGCATTAATGTTTGGTTATTTCATC < 1:5518895/35‑1 CCTTTACCTCGGCATTAATGTTTGGTTATTTCATC < 1:5298721/35‑1 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG > 1:16154755/1‑35 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG < 1:17456438/35‑1 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG > 1:17712413/1‑35 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG > 1:18160513/1‑35 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG < 1:14094258/35‑1 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG > 1:3642534/1‑35 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG > 1:5288739/1‑35 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG > 1:11005253/1‑35 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG < 1:7819251/35‑1 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG < 1:10403188/35‑1 TTTACCTCGGCATTAATGTTTGGTTATTTCATCtg > 1:6257861/1‑33 TTTACCTCGGCATTAATGTTTGGTTATTTCATCGG < 1:5061632/35‑1 TTTACCTCGGCATTAATGTTTGGTTATTTCATCGG < 1:5668235/35‑1 TTTACCTCGGCATTAATGTTTGGTTATTTCATCGG > 1:8082214/1‑35 TTTACCTCGGCATTAATGTTTGGTTATTTCATCGG < 1:872224/35‑1 TTACCTCGGCATTAATGTTTTGTTATTTCATCGGC > 1:9642023/1‑35 TTACCTCGGCATTAATGTTTGGTTATTTCATCGGC > 1:18253833/1‑35 TTACCTCGGCATTAATGTTTGGTTATTTCATCGGC > 1:14151201/1‑35 TTACCTCGGCATTAATGTTTGGTTATTTCATCGGC > 1:2589679/1‑35 TTACCTCGGCATTAATGTTTGGTTATTCCATCGGC > 1:7783371/1‑35 TACCTCGGCATTAATGTTTGGTTATTTCATCGGCT > 1:4751508/1‑35 ACCTCGGCATTAATGTTTGGTTATTTCATCGGCTC > 1:10829388/1‑35 ACCTCGGCATTAATGTTTGGTTATTTCATCGGCTC < 1:2685326/35‑1 CCTCGGCATTAATGTTTGGTTATTTCATCGGCTCC > 1:6810050/1‑35 CTCGGCATTAATGTTTGGTTATTTCATCGGCTCCC > 1:13517369/1‑35 TCGGCATTAATGTTTGGTTATTTCATCGGCTCCCc > 1:6340809/1‑34 CGGCATTAATGTTTGGTTATTTCATCGGCTCCCTT > 1:135099/1‑35 GCATTAATGTTTGGTTATTTCATCGGCTCCCCTTc > 1:9581073/1‑34 GCATTAATGTTTGGTTATTTCATCGGCTCCCCTTc > 1:13457623/1‑34 ATTAATGTTTGGTTATTTCATCGGCTCCCTTTCCC > 1:12789494/1‑35 TAATGTTTGGTTATTTCATCGGCTCCCTTTCCCGG > 1:4623321/1‑35 AATGTTTGGTTATTTCATCGGCTCCCTTTCCCGGG > 1:3944599/1‑35 ATGTTTGGTTATTTCATCGGCTCCCTTTCCCGGGG > 1:15027576/1‑35 ATGTTTGGTTATTTCATCGGCTCCCTTTCCCGGGG > 1:6924732/1‑35 TGTTTGGTTATTTCATCGGCTCCCTTTCCCGGGGg > 1:2694542/1‑34 actGCTCCCTTTGCCGGGGTTATGGCATCGTTTTA > 1:10828241/4‑35 GGCTCCCTTTGCCGGGGTTATGGCATCGTTTTACA > 1:4810066/1‑35 GGCTCCCTTTGCCGGGGTTATGGCATCGTTTTACA < 1:7030298/35‑1 GGCTCCCTTTGCCGGGGTTATGGCATCGTTTTACA > 1:6463181/1‑35 GGCTCCCTTTGCCGGGGTTATGGCATCGTTTTACA > 1:1586854/1‑35 GCTCCCTTTGCCGGGGTTATGGCATCGTTTTACAC < 1:2176140/35‑1 GCTCCCTTTGCCGGGGTTATGGCATCGGTTTACAC > 1:13475329/1‑35 GCTCCCTTTGCCGAGGTTATGGCATCGTTTTACAC < 1:9361167/35‑1 CTCCCTTTGCCGGGGTTATGGCATCGTTTTACACC < 1:10666178/35‑1 CTCCCTTTGCCGGGGTTATGGCATCGTTTTACACC < 1:16930980/35‑1 CTCCCTTTGCAGGGGTTATGGCATCGTTTTACACC < 1:3786344/35‑1 TCCCTTTGCCGGGGTTATGGCATCGTTTTACACCC > 1:11943329/1‑35 TCCCTTTGCCGGGGTTATGGCATCGTTTTACACCC < 1:5687446/35‑1 TCCCTTTGCCGGGGTTATGGCATCGTTTTACACCC > 1:12485819/1‑35 TCCCTTTGCCGGGGTTATGGCATCGTTTTACACCC < 1:10818660/35‑1 CCCTTTGCCGGGGTTATGGCATCGTTTTACACCCA > 1:2679925/1‑35 CCCTTTGCCGGGGTTATGGCATCGTTTTACACCCA < 1:14915155/35‑1 CCCTTTGCCGGGGTTATGGCATCGTTTTACACCCA < 1:10585439/35‑1 CCTTTACCTCGGCATTAATGTTTGGTTATTTCATCGGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1831026‑1830987 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctcCCTTTGCCGGGGTTATGGCATCGTTTTACACCCA < REL606/1996585‑1996552 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |