New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3780471 =81 (0.790)7 (0.120) 4/28 NT 14.0% coding (503/1359 nt) ECB_03520 conserved hypothetical protein
?REL606 = 4600662 39 (0.650)coding (33/606 nt) osmY periplasmic protein

Only 100 of 165 total aligned reads displayed.

CGATGACTATGACAAGACTGAAGATTTCGAAAACTCTGCTGGCTGTAATGTTGACCTCTGCCGTCGCGA  >  REL606/4600628‑4600696
                                  |                                  
cGATGACTATGACAAGACTGAAGATTTCGAAAAct                                    >  1:19309008/1‑35 (MQ=255)
cGATGACTATGACAAGACTGAAGATTTCGAAAAct                                    >  1:13798300/1‑35 (MQ=255)
 gATGACTATGACAAGACTGAAGATTTCGAAAACTc                                   <  1:19455258‑M2/35‑2 (MQ=255)
 gATGACTATGACAAGACTGAAGATTTCGAAAACTc                                   <  1:20190893‑M2/35‑2 (MQ=255)
  aTGACTATGACAAGACTGAAGATTTCGAAAACTct                                  <  1:17289871‑M2/35‑3 (MQ=255)
  aTGACTATGACAAGACTGAAGATTTCGAAAACTct                                  >  1:18022211‑M2/1‑33 (MQ=255)
  aTGACTATGACAAGACTGAAGATTTCGAAAACTct                                  >  1:606854‑M2/1‑33 (MQ=255)
  aTGACTATGACAAGACTGAAGATTTCGAAAACTct                                  <  1:7969452‑M2/35‑3 (MQ=255)
   tGACTATGACAAGACTGAAGATTTCGAAAACTctg                                 >  1:6655843‑M2/1‑32 (MQ=255)
   tGACTATGACAAGACTGAAGATTTCGAAAACTctg                                 >  1:16271770‑M2/1‑32 (MQ=255)
   tGACTATGACAAGACTGAAGATTTCGAAAACTctg                                 >  1:18253853‑M2/1‑32 (MQ=255)
   tGACTATGACAAGACTGAAGATTTCGAAAACTctg                                 >  1:1273861‑M2/1‑32 (MQ=255)
   tGACTATGACAAGACTGAAGATTTCGAAAACTctg                                 >  1:11232203‑M2/1‑32 (MQ=255)
     aCTATGACAAGACTGAAGATTTCGAAAACTctgct                               <  1:17673328‑M2/35‑6 (MQ=255)
     aCTATGACAAGACTGAAGATTTCGAAAACTctgct                               >  1:12482427‑M2/1‑30 (MQ=255)
     aCTATGACAAGACTGAAGATTTCGAAAACTctgct                               >  1:511890‑M2/1‑30 (MQ=255)
     aCTATGACAAGACTGAAGATTTCGAAAACTctgct                               <  1:15095336‑M2/35‑6 (MQ=255)
     aCTATGACAAGACTGAAGATTTCGAAAACTctgct                               <  1:13866748‑M2/35‑6 (MQ=255)
      cTATGACAAGATTGAAGATTTCGAAAACTctgctg                              >  1:9426167‑M2/1‑29 (MQ=255)
      cTATGACAAGACTGAAGATTTCGAAAACTctgctg                              <  1:8379883‑M2/35‑7 (MQ=255)
      cTATGACAAGACTGAAGATTTCGAAAACTctgctg                              >  1:8515940‑M2/1‑29 (MQ=255)
      cTATGACAAGACTGAAGATTTCGAAAACTctgctg                              <  1:10498160‑M2/35‑7 (MQ=255)
      cTATGACAAGACTGAAGATTTCGAAAACTctgctg                              >  1:19300147‑M2/1‑29 (MQ=255)
      cTATGACAAGACTGAAGATTTCGAAAACTctgctg                              >  1:16604637‑M2/1‑29 (MQ=255)
       tATGACAAGACTTAAGATTTCGAAAACTctgctgg                             <  1:4135947‑M2/35‑8 (MQ=255)
       tATGACAAGACTGAAGATTTCGAAAACTctgctgg                             >  1:17503288‑M2/1‑28 (MQ=255)
       tATGACAAGACTGAAGATTTCGAAAACTctgctgg                             >  1:13454011‑M2/1‑28 (MQ=255)
       tATGACAAGACTGAAGATTTCGAAAACTctgctgg                             <  1:16851481‑M2/35‑8 (MQ=255)
       tATGACAAGACTGAAGATTTCGAAAACTctgctgg                             >  1:20396105‑M2/1‑28 (MQ=255)
       tATGACAAGACTGAAGATTTCGAAAACTctgctgg                             <  1:19068818‑M2/35‑8 (MQ=255)
       tATGACAAGACTGAAGATTTCGAAAACTctgctgg                             >  1:1832209‑M2/1‑28 (MQ=255)
        aTTACAAGACTGAAGATTTCGAAAACTctgctggc                            <  1:3003850‑M2/35‑9 (MQ=255)
        aTGACAAGACTGAAGATTTCGAAAACTctgctggc                            <  1:5390168‑M2/35‑9 (MQ=255)
        aTGACAAGACTGAAGATTTCGAAAACTctgctggc                            <  1:5693635‑M2/35‑9 (MQ=255)
        aTGACAAGACTGAAGATTTCGAAAACTctgctggc                            <  1:2440542‑M2/35‑9 (MQ=255)
        aTGACAAGACTGAAGATTTCGAAAACTctgctggc                            <  1:6115850‑M2/35‑9 (MQ=255)
         tGACAAGACTGAAGATTTCGAAAACTctgctggct                           >  1:19103222‑M2/1‑26 (MQ=255)
         tGACAAGACTGAAGATTTCGAAAACTctgctggct                           <  1:9357111‑M2/35‑10 (MQ=255)
         tGACAAGACTGAAGATTTCGAAAACTctgctggct                           <  1:8048150‑M2/35‑10 (MQ=255)
         tGACAAGACTGAAGATTTCGAAAACTctgctggct                           >  1:10417800‑M2/1‑26 (MQ=255)
         tGACAAGACTGAAGATTTCGAAAACTctgctggct                           <  1:12328112‑M2/35‑10 (MQ=255)
         tGACAAGACTGAAGATTTCGAAAACTctgctggct                           >  1:15645152‑M2/1‑26 (MQ=255)
          gACAGGACTGAAGATTTCGAAAACTctgctggctg                          >  1:3899591‑M2/1‑25 (MQ=255)
          gACAAGACTTAAGATTTCGAAAACTctgctggctg                          <  1:2799548‑M2/35‑11 (MQ=255)
          gACAAGACTGAAGATTTCGAAAACTctgctggctg                          >  1:18291154‑M2/1‑25 (MQ=255)
          gACAAGACTGAAGATTTCGAAAACTctgctggctg                          <  1:12812419‑M2/35‑11 (MQ=255)
          gACAAGACTGAAGATTTCGAAAACTctgctggctg                          <  1:11814685‑M2/35‑11 (MQ=255)
          gACAAGACTGAAGATTTCGAAAACTctgctggctg                          >  1:15333603‑M2/1‑25 (MQ=255)
           aCAATACTGAAGATTTCGAAAACTctgctggctgg                         <  1:12195037‑M2/35‑12 (MQ=255)
           aCAAGACTGAAGATTTCGAAAACTctgctggctgg                         <  1:4027112‑M2/35‑12 (MQ=255)
           aCAAGACTGAAGATTTCGAAAACTctgctggctgg                         <  1:6886282‑M2/35‑12 (MQ=255)
           aCAAGACTGAAGATTTCGAAAACTCTGCTGGCTGt                         <  1:20384607/35‑1 (MQ=255)
           aCAAGACTGAAGATTTCGAAAACTCTGCTGGCTGt                         <  1:5789434/35‑1 (MQ=255)
           aCAAGACTGAAGATTTCGAAAACTCTGCTGGCTGt                         <  1:1167776/35‑1 (MQ=255)
           aCAAGACTGAAGATTTCGAAAACTATGCTGGCTGt                         <  1:1682113/35‑1 (MQ=255)
            cAAGACTGAAGATTTCGAAAACTctgctggctggg                        <  1:16103941‑M2/35‑13 (MQ=255)
            cAAGACTGAAGATTTCGAAAACTctgctggctggg                        <  1:1064342‑M2/35‑13 (MQ=255)
            cAAGACTGAAGATTTCGAAAACTCTGCTGGCTGTa                        <  1:4894642/35‑1 (MQ=255)
             aaGACTGAAGATTTCGAAAACTctgctggctgggg                       <  1:14076015‑M2/35‑14 (MQ=255)
             aaGACTGAAGATTTCGAAAACTctgctggctgggg                       <  1:15984954‑M2/35‑14 (MQ=255)
             aaGACTGAAGATTTCGAAAACTctgctggctggga                       <  1:13042625‑M2/35‑14 (MQ=255)
             aaGACTGAAGATTTCGAAAACTCTGCTGGCTGTaa                       <  1:18675059/35‑1 (MQ=255)
              aGACTGAAGATTTCGAAAACTctgctggctggggt                      <  1:20261910‑M2/35‑15 (MQ=255)
              aGACTGAAGATTTCGAAAACTctgctggctggggg                      <  1:4682437‑M2/35‑15 (MQ=255)
              aGACTGAAGATTTCGAAAACTCTGCTGGCTGTAAt                      <  1:6753967/35‑1 (MQ=255)
              aGACTGAAGATTTCGAAAACTCTGCTGGCTGTAAt                      <  1:10949660/35‑1 (MQ=255)
              aGACTGAAGATTTCGAAAACTCTGCTGGCTGTAAt                      <  1:17238066/35‑1 (MQ=255)
               gACTGAAGATTTCGAAAACTctgctggctggggtg                     <  1:7533890‑M2/35‑16 (MQ=255)
               gACTGAAGATTTCGAAAACTCTGCTGGCTGTAATg                     <  1:3480192/35‑1 (MQ=255)
                aCTGAAGATTTCGAAAACTctgctggctggggggg                    <  1:17057088‑M2/35‑17 (MQ=255)
                aCTGAAGATTTCGAAAACTCTGCTGGCTGGGATGt                    >  1:1443682/1‑35 (MQ=37)
                 cTGAAGATTTCGAAAACTctgctggctgggggggt                   <  1:13646117‑M2/35‑18 (MQ=255)
                  tGAAGATTTCGAAAACTctgctggctgggggggtg                  <  1:5795042‑M2/35‑19 (MQ=255)
                  tGAAGATTTCGAAAACTCTGctggctggggggttg                  <  1:7458817‑M2/35‑16 (MQ=255)
                  tGAAGATTTCGAAAACTCTGCTGGCTGTAATGTTg                  <  1:1919865/35‑1 (MQ=255)
                  tGAAGATTTCGAAAACTCTGCTGGCTGTAATGTTg                  <  1:19975264/35‑1 (MQ=255)
                  tGAAGATTTCGAAAACTCTGCTGGCTGGGATGttt                  >  1:15751625/1‑34 (MQ=37)
                   gAAGATTTCGAAAACTctgctggctgggggggtgt                 <  1:3101271‑M2/35‑20 (MQ=255)
                   gAAGATTTCGAAAACTCTGctggctggggtgttgt                 <  1:2733801‑M2/35‑17 (MQ=255)
                   gAAGATTTCGAAAACTCTGctggctggggggttgg                 <  1:7307249‑M2/35‑17 (MQ=255)
                   gAAGATTTCGAAAACTCTGCTGGCTGTAATGTTGa                 <  1:12378360/35‑1 (MQ=255)
                     aGATTTCGAAAACTCTGCTGGCTGTAATGTTGAcc               <  1:17971988/35‑1 (MQ=255)
                     aGATTTCGAAAACTCTGCTGGCTGTAATGTTGAcc               <  1:12101567/35‑1 (MQ=255)
                     aGATTTCGAAAACTCTGCTGGCTGTAATGTTGAcc               <  1:2285970/35‑1 (MQ=255)
                      gATTTCGAAAACTCTGCTGGTTGTAATGTTGACct              >  1:2470786/1‑35 (MQ=255)
                      gATTTCGAAAACTCTGCTGGCTGTAATGTTGACct              <  1:715326/35‑1 (MQ=255)
                       aTTTCGAAAACTCTGCTGGCTGTAATGTTGACctc             <  1:842854/35‑1 (MQ=255)
                       aTTTCGAAAACTCTGCTGGCTGGGGTGTTGACctc             >  1:2629064/1‑35 (MQ=25)
                        tttCGAAAACTCTGCTGGCTGTAATGTTGACctct            <  1:10473981/35‑1 (MQ=255)
                        tttCGAAAACTCTGCTGGCTGTAATGTTGACctct            <  1:8729315/35‑1 (MQ=255)
                          tCGAAAACTCTGCTGGCTGTAATGTTGACCTCTGc          <  1:4315575/35‑1 (MQ=255)
                          tCGAAAACTCTGCTGGCTGTAATGTTGACCTCTGc          <  1:11504782/35‑1 (MQ=255)
                          tCGAAAACTCTGCTGGCTGTAATGTTGACCTCTGc          <  1:17828693/35‑1 (MQ=255)
                           cGAAAACTCTGCTGGCTGTAATGTTGACCTCTGcc         <  1:15761251/35‑1 (MQ=255)
                           cGAAAACTCTGCTGGCTGTAATGTTGACCTCTGcc         <  1:3521614/35‑1 (MQ=255)
                           cGAAAACTCTGCTGGCTGTAATGTTGACCTCTGcc         <  1:7887023/35‑1 (MQ=255)
                            gAAAACTCTGCTGGCTGTAATGTTGACCTCTGCCg        <  1:14120680/35‑1 (MQ=255)
                             aaaaCTCTGCTGGCTGTAATGTTGACCTCTGCCGt       <  1:2850310/35‑1 (MQ=255)
                              aaaCTCTGCTGGCTGTAATGTTGACCTCTGCCGTc      <  1:13961630/35‑1 (MQ=255)
                                  tctGCTGGCTGTAATGTTGACCTCTGCCGTCGCGa  <  1:3736776/35‑1 (MQ=255)
                                  |                                  
CGATGACTATGACAAGACTGAAGATTTCGAAAACTCTGCTGGCTGTAATGTTGACCTCTGCCGTCGCGA  >  REL606/4600628‑4600696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.