New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3040638 | 93 (0.910) | 11 (0.140) | 3/38 | NT | 14.8% | coding (649/810 nt) | pppA | bifunctional prepilin leader peptidase/ methylase |
? | REL606 | 4567447 = | 53 (0.650) | coding (1808/2151 nt) | yjiY | predicted inner membrane protein |
AACGCCCCCACCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3040622‑3040638 ‑‑‑‑‑‑‑‑‑‑‑‑cagccGGAACAACAGTTACCCAGATGTATTGGGTGCGCT > REL606/4567447‑4567480 AACCCCCCCACCCAGCCGGAACAACAGTTACCCAG < 1:1094976/35‑1 ccaCCCACCCAGCCGGAACAACAGTTACCCAGATG < 1:10956590/32‑1 caCCCACCCAGCCGGAACAACAGTTACCCAGATGT < 1:17550392/33‑1 caCCCACCCAGCCGGAACAACAGTTACCCAGATGT < 1:5220360/33‑1 CCCCCGCCCAGCCGGAACAACAGTTACCCAGATGT < 1:5289687/35‑1 CCCCCACCCAGCCGGAACAACAGTTACCCAGATGT < 1:187896/35‑1 gCCCATCCAGCCGGAACAACAGTTACCCAGATGTA < 1:18790681/34‑1 agCCACCCAGCCGGAACAACAGTTACCCAGATGTA < 1:19533533/33‑1 aCCCCCCCAGCCGGAACAACAGTTACCCAGATGTA < 1:13013277/34‑1 CCCCCCCAGCCGGAACAACAGTTACCCAGATGTAT < 1:11014267/35‑1 CCCACCCAGCCGGAACAACAGTTACCCAGATGTAT < 1:15161398/35‑1 CCCACCCAGCCGGAACAACAGTTACCCAGATGTAT < 1:17217790/35‑1 cccCCCAGCCGGAACAACAGTTACCCAGATGTATT < 1:19816176/32‑1 CCACCCAGCCGGAACAACAGTTACCCAGATGTATT < 1:18266741/35‑1 tgCCCAGCCGGAACAACAGTTACCCAGATGTATTG < 1:9235084/33‑1 ccCCCAGCCGGAACAACAGTTACCCAGATGTATTG < 1:3284306/33‑1 cCCCAGCCGGAACAACAGTTACCCAGATGTATTGG < 1:3404639/34‑1 cCCCAGCCGGAACAACAGTTACCCAGATGTATTGG < 1:11037905/34‑1 ACCCAGCCGGAACAACAGTTACCCAGATGTATTGG < 1:12326781/35‑1 CCCAGCCGGAACAACAGTTACCCAGATGTATTGGG < 1:11440962/35‑1 CCCAGCCGGAACAACAGTTACCCAGATGTATTGGG < 1:17993111/35‑1 CCAGCCGGAACAACAGTTACCCAGATGTATTGGGT < 1:308512/35‑1 CCAGCCGGAACAACAGTTACCCAGATGTATTGGGT < 1:8729975/35‑1 CCAGCCGGAACAACAGTTACCCAGATGTATTGGGT < 1:9791203/35‑1 CCAGCCGGAACAACAGTTACACAGATGTATTGGGT < 1:17404484/35‑1 CAGCCGGAACAACAGTTACCCAGATGTATTGGGTG < 1:8503302/35‑1 CAGCCGGAACAACAGTTACCCAGATGTATTGGGTG < 1:7267117/35‑1 CAGCCGGAACAACAGTTACACAGATGTATTGGGTG < 1:11602959/35‑1 AGCCGGAACAACAGTTACCCAGATGTATTGGGTGC < 1:8811065/35‑1 AGCCGGAACAACAGTTACCCAGATGTATTGGGTGC < 1:18243325/35‑1 AGCCGGAACAACAGTTACCCAGATGTATTGGGTGC < 1:10861550/35‑1 AGCCGGAACAACAGTTACCCAGATGTATTGGGTGC < 1:11074648/35‑1 GCCGGAACAACAGTTACCCAGATGTATTGGGTGCG > 1:10207181/1‑35 GCCGGAACAACAGTTACCCAGATGTATTGGGTGCG < 1:9228813/35‑1 GCCGGAACAACAGTTACCCAGATGTATTGGGTGCG < 1:757920/35‑1 GCCGGAACAACAGTTACCCAGATGTATTGGGTGCG > 1:5760437/1‑35 GCCGGAACAACAGTTACCCAGATGTATTGGGTGCG < 1:14658271/35‑1 GCCGGAACAACAGTTACCCAGATGTATTGGGTGCG > 1:13317056/1‑35 CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC > 1:15884597/1‑35 CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC < 1:15829767/35‑1 CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC < 1:10869296/35‑1 CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC > 1:14299945/1‑35 CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC < 1:15765030/35‑1 CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC > 1:8721270/1‑35 CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC > 1:1554553/1‑35 CCGGAACAACAGTTACCCAGATGTATTGGGTGCGC > 1:8571920/1‑35 CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT > 1:16681461/1‑35 CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT > 1:10389870/1‑35 CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT > 1:7274518/1‑35 CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT < 1:19330989/35‑1 CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT > 1:13772806/1‑35 CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT < 1:20237443/35‑1 CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT > 1:3350689/1‑35 CGGAACAACAGTTACCCAGATGTATTGGGTGCGCT > 1:11953370/1‑35 AACGCCCCCACCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3040622‑3040638 ‑‑‑‑‑‑‑‑‑‑‑‑cagccGGAACAACAGTTACCCAGATGTATTGGGTGCGCT > REL606/4567447‑4567480 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |