New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1286707 = | 97 (0.940) | 17 (0.210) | 5/38 | NT | 21.4% | intergenic (+31/‑152) | narI/ECB_01206 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein |
? | REL606 | = 4286236 | 48 (0.590) | coding (386/930 nt) | alsK | D‑allose kinase |
CAACTCACCCCGCACCGTGCCCATAAAAAAACCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1286744‑1286707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccTTACGCAACAACTGGTTCTGGCGGCCTATCTCGG < REL606/4286236‑4286203 CAACTCGCCCCGCACCGTGCCCATAAAAAAACCCC < 1:2918252/35‑1 CAACTCCCCCCGCACCGTGCCCATAAAAAAACCCC < 1:20386352/35‑1 CAACTCACCCCTCACCGTGCCCATAAAAAAACCCC > 1:12397742/1‑35 AACTCACCCCGCACCGTGCCCATAAAAACACCCCG > 1:11309050/1‑35 AACTCACCCCGCACCGTGCCCATAAAAAAACCCCG < 1:7985823/35‑1 AACTCACCCCGCACCGTGCCCATAAAAAAACCCCG > 1:5381239/1‑35 AACTCACCCCGCACCGTGCCCATAAAAAAACCCCG < 1:11107875/35‑1 ACTCACCCCGCACCGTGCCCATAAAAAAACCCCGC > 1:8538662/1‑35 ACTCACCCCGCACCGTGCCCATAAAAAAACCCCGC > 1:7205126/1‑35 ACTCACCCCGCACCGTGCCCATAAAAAAACCCCGC > 1:6014631/1‑35 ACTCACCCCGCACCGTGCCCATAAAAAAACCCCGC < 1:16474604/35‑1 ACTCACCCCGCACCGTGCCCATAAAAAAACCCCGC < 1:14945268/35‑1 CTCACCCCGCACCGTGCCCATAAAAAAACCCCGCC > 1:18211800/1‑35 ccgTAAAAAAACCCCGCCTTACGCAACAACTGGTT < 1:12388186/32‑1 gTAAAAAAACCCCGCCTTACGCAACAACTGGTTCT < 1:970450/34‑1 gAAAAAAACCCCGCCTTACGCAACAACTGGTTCTG < 1:17758393/34‑1 aagAAAAACCCCGCCTTACGCAACAACTGGTTCTG < 1:10246583/32‑1 aagAAAAACCCCGCCTTACGCAACAACTGGTTCTG < 1:13832342/32‑1 aAAAAAAACCCCGCCTTACGCAACAACTGGTTCTG < 1:9088719/34‑1 TAAAAAAACCCCGCCTTACGCAACAACTGGTTCTG < 1:2220813/35‑1 agAAAAACCCCGCCTTACGCAACAACTGGTTCTGG < 1:4366621/33‑1 AAAAAAACCCCGCCTTACGCAACAACTGGTTCTGG < 1:3839295/35‑1 gAAAAACCCCGCCTTACGCAACAACTGGTTCTGGC < 1:9139820/34‑1 gAAAAAACCCGCCTTACGCAACAACTGGTTCTGGC < 1:15758154/34‑1 gAAAAAACCCGCCTTACGCAACAACTGGTTCTGGC < 1:2862930/34‑1 AAAAAACCCCGCCTTACGCAACAACTGGTTCTGGC < 1:6588445/35‑1 AAAAACCCCGCCTTACGCAACAACTGGTTCTGGCG < 1:5177674/35‑1 AAAAAACCCGCCTTACGCAACAACTGGTTCTGGCG < 1:1097387/35‑1 AAAACCCCGCCTTGCGCAACAACTGGTTCTGGCGG < 1:18047797/35‑1 AAAACCCCGCCTTACGCAACAACTGGTTCTGGCGG < 1:7900049/35‑1 tAACCCCGCCTTACGCAACAACTGGTTCTGGCGGC < 1:16954289/34‑1 AACCCCGCCTTACGCAACAACTGGTTCTGGCGGCC < 1:6858154/35‑1 ACCCCGCCTTACGCAACAACTGGTTCTGGCGGCCT < 1:10396277/35‑1 ACCCCGCCTTACGCAACAACTGGTTCTGGCGGCCT < 1:13515374/35‑1 ACCCCGCCTTACGCAACAACTGGTTCTGGCGGCCT < 1:18878622/35‑1 CCCCGCCTTACGCAACAACTGGTTCTGGCGGCCTA < 1:12547507/35‑1 CCCCGCCTTACGCAACAACTGGTTCTGGCGGCCTA < 1:6799146/35‑1 CCGCCTTACGCAACAACTGGTTCTGGCGGGCTATC > 1:4185554/1‑35 CCGCCTTACGCAACAACTGGTTCTGGCGGCCTATC < 1:15040646/35‑1 CCGCCTTACGCAACAACTGGTTCTGGCGGCCTATC < 1:16554/35‑1 CGCCTTACGCAACAACTGGTTCTGGCGGCCTATCT < 1:4089273/35‑1 CGCCTTACGCAACAACTGGTTCTGGCGGCCTATCT > 1:12399873/1‑35 CGCCTTACGCAACAACTGGTTCTGGCGGCCTATCT < 1:12805601/35‑1 CGCCTTACGCAACAACTGGTTCTGGCGGCCTATCT > 1:11217958/1‑35 CGCCTTACGCAACAACTGGTTCTGGCGGCCTATCN < 1:11767431/35‑1 GCCTTACGCAACAACTGGTTCTGGCGGCCTATCTC < 1:6980097/35‑1 GCCTTACGCAACAACTGGTTCTGGCGGCCTATCTC < 1:8979058/35‑1 GCCTTACGCAACAACTGGTTCTGGCGGCCTATCTC < 1:9574813/35‑1 CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG < 1:6313201/35‑1 CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG > 1:19330625/1‑35 CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG < 1:10502726/35‑1 CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG < 1:7478268/35‑1 CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG < 1:10450596/35‑1 CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG > 1:15242602/1‑35 CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG < 1:16854641/35‑1 CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG > 1:18154855/1‑35 CTTACGCAACAACTGGTTCTGGCGGCCTATCTCGG < 1:16471122/35‑1 CTTACGCAACAACTGGTTCTGGCGGCCTATCTCGG < 1:9020873/35‑1 CTTACGCAACAACTGGTTCTGGCGGCCTATCTCGG < 1:10729167/35‑1 CAACTCACCCCGCACCGTGCCCATAAAAAAACCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1286744‑1286707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccTTACGCAACAACTGGTTCTGGCGGCCTATCTCGG < REL606/4286236‑4286203 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |