New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2671676 =67 (0.650)9 (0.120) 3/36 NT 13.7% coding (328/594 nt) grpE heat shock protein
?REL606 4487631 = 63 (0.820)coding (453/1119 nt) yjhC predicted oxidoreductase

Only 100 of 150 total aligned reads displayed.

TCAACCATCGCAGACATATCCGGGTTAGCTTTATCAGCCACTTCCAGCGCACGATCCAGGCTATCAATC  >  REL606/2671642‑2671710
                                  |                                  
tCACCCATCGCAGACATATCCGGGTTAGCTTTATc                                    <  1:13594986/35‑1 (MQ=255)
tCACCCATCGCAGACATATCCGGGTTAGCTTTATc                                    <  1:4868880/35‑1 (MQ=255)
tCAACCATCGCAGACATATCCGGGTTAGCTTTATc                                    >  1:7417563/1‑35 (MQ=255)
tCAACCATCGCAGACATATCCGGGTTAGCTTTATc                                    <  1:17155165/35‑1 (MQ=255)
ctttttccaggaaagtctctcttgtttgttttccc                                    >  1:5482224‑M1/35‑35 (MQ=255)
ctttttccaggaaagtctctcttgtttgttttccc                                    <  1:9630076‑M1/1‑1 (MQ=255)
ctttttccaggaaagtctctcttgtttgttttccc                                    >  1:18924994‑M1/35‑35 (MQ=255)
 tttttccaggaaagtctctcttgtttgttttccCa                                   <  1:9017312‑M1/2‑1 (MQ=255)
 tttttccaggaaagtctctcttgtttgttttccCa                                   <  1:12354146‑M1/2‑1 (MQ=255)
 tttttccaggaaagtctctcttgtttgttttccCa                                   >  1:8286238‑M1/34‑35 (MQ=255)
 tttttccaggaaagtctctcttgtttgttttccCa                                   >  1:6813643‑M1/34‑35 (MQ=255)
 cacccATCGCAGACATATCCGGGTTAGCTTTATCa                                   <  1:17556684/32‑1 (MQ=255)
 cAACCATCGCAGACATATCCGGGTTAGCTTTATCa                                   >  1:6007479/1‑35 (MQ=255)
 aacccATCGCAGACATATCCGGGTTAGCTTTATCa                                   <  1:6022391/32‑1 (MQ=255)
  ttttccaggaaagtctctcttgtttgttttccCAg                                  >  1:8097009‑M1/33‑35 (MQ=255)
  ttttccaggaaagtctctcttgtttgttttccCAg                                  <  1:817492‑M1/3‑1 (MQ=255)
  aaCCATCGCAGACATATCCGGGTTAGCTTTATCAg                                  >  1:12450684/1‑35 (MQ=255)
   tttccaggaaagtctctcttgtttgttttccCAGc                                 >  1:2486165‑M1/32‑35 (MQ=255)
   tttccaggaaagtctctcttgtttgttttccCAGc                                 >  1:380091‑M1/32‑35 (MQ=255)
   cccATCGCAGACATATCCGGGTTAGCTTTATCAGc                                 <  1:683776/34‑1 (MQ=255)
   cccATCCCAGACATATCCGGGTTAGCTTTATCAGc                                 <  1:11927054/34‑1 (MQ=255)
   aCCATCGCGGACATATCCGGGTTAGCTTTATCAGc                                 >  1:974256/1‑35 (MQ=255)
   aCCATCGCAGACATATCCGGGTTAGCTTTATCAGc                                 >  1:20178165/1‑35 (MQ=255)
   aCCATCGCAGACATATCCGGGTTAGCTTTATCAGc                                 >  1:1424633/1‑35 (MQ=255)
   aCCATCGCAGACATATCCGGGTTAGCTTTATCAGc                                 >  1:8689268/1‑35 (MQ=255)
    ttccaggaaattctctcttgtttgttttccCAGcc                                <  1:16247391‑M1/5‑1 (MQ=255)
    ttccaggaaagtctctcttgtttgttttccCAGcc                                <  1:20089557‑M1/5‑1 (MQ=255)
    ttccaggaaagtctctcttgtttgttttccCAGcc                                >  1:8432220‑M1/31‑35 (MQ=255)
    ttccaggaaagtctctcttgtttgttttccCAGcc                                >  1:12096305‑M1/31‑35 (MQ=255)
    ccATCGCAGACATATCCGGGTTAGCTTTATCAGcc                                >  1:11658442/1‑35 (MQ=255)
    ccATCGCAGACATATCAGGGTTAGCTTTATCAGcc                                <  1:11879509/35‑1 (MQ=255)
     tccaggaaagtctctcttgtttgttttccCAGCCa                               >  1:18165997‑M1/30‑35 (MQ=255)
     tccaggaaagtctctcttgtttgttttccCAGCCa                               <  1:25306‑M1/6‑1 (MQ=255)
     tccaggaaagtctctcttgtttgttttccCAGCCa                               <  1:11680106‑M1/6‑1 (MQ=255)
     cATCGCAGACATATCCGGGTTAGCTTTATCAGCCa                               >  1:2814584/1‑35 (MQ=255)
      aTCGCAGACATATCCGGGTTATCTTTATCAGCCAc                              >  1:9198096/1‑35 (MQ=255)
      aTCGCAGACATATCCGGGTTAGCTTTATCAGCCAc                              >  1:15178371/1‑35 (MQ=255)
      aTCGCAGACATATCCGGGTTAGCTTTATCAGCCAc                              >  1:10138465/1‑35 (MQ=255)
      aTCGCAGACATATCCGGGTTAGCTTTATCAGCCAc                              >  1:19121941/1‑35 (MQ=255)
       tCGCAGACATATCCGGGTTAGCTTTATCAGCCACt                             >  1:1324238/1‑35 (MQ=255)
        cccAGACATATCCGGGTTAGCTTTATCAGCCACtt                            <  1:2345574/33‑1 (MQ=255)
         gCAGACATATCCGGGTTAGCTTTATCAGCCACTTc                           >  1:18854768/1‑35 (MQ=255)
          cAGACATATCCGGGTTAGCTTTATCAGCCACTTcc                          >  1:8665119/1‑35 (MQ=255)
           aGACATATCCGGGTTAGCTTTATCAGCCACTTCCa                         >  1:9729979/1‑35 (MQ=255)
            gACATATCCGGGTTAGCTTTATCAGCCACTTCCAg                        >  1:651578/1‑35 (MQ=255)
            gACATATCCGGGTTAGCTTTATCAGCCACTTCCAg                        >  1:19498617/1‑35 (MQ=255)
            gACATATCCGGGTTAGCTTTATCAGCCACTTCCAg                        >  1:10077850/1‑35 (MQ=255)
            gACATATCCGGGTTAGCTTTATCAGCCACTTCCAg                        >  1:13186746/1‑35 (MQ=255)
            gACATATCCGGGTTAGCTTTATCAGCCACTTCCAg                        >  1:19119745/1‑35 (MQ=255)
            aaCATATCCGGGTTAGCTTTATCAGCCACTTCCAg                        >  1:1634692/2‑35 (MQ=255)
             aCATATCCGGGTTAGCTTTATCAGCCACTTCCAgc                       >  1:5957711/1‑35 (MQ=255)
             aCATATCCGGGTTAGCTTTATCAGCCACTTCCAgc                       >  1:14782057/1‑35 (MQ=255)
             aCATATCCGGGTTAGCTTTATCAGCCACTTCCAgc                       >  1:18035748/1‑35 (MQ=255)
              cATATCCGGGTTAGCTTTATCAGCCACTTCCAgcg                      >  1:442146/1‑35 (MQ=255)
               atatCCGGGTTAGCTTTATCAGCCACTTCCAgcgc                     >  1:3178211/1‑35 (MQ=255)
               atatCCGGGTTAGCTTTATCAGCCACTTCCAgcgc                     >  1:3792530/1‑35 (MQ=255)
                tatCCGGGTTAGCTTTATCAGCCACTTCCAGCGCa                    >  1:15780691/1‑35 (MQ=255)
                 atCCGGGTTAGCTTTATCAGCCACTTCCAGCGCAc                   >  1:6892040/1‑35 (MQ=255)
                  tCCGTGTTAGCTTTATCAGCCACTTCCAGCGCACg                  >  1:8173391/1‑35 (MQ=255)
                  tCCGGGTTAGCTTTATCAGCCACTTCCAGCGCACg                  >  1:495880/1‑35 (MQ=255)
                   cggggTTATTTTTCCCAGCCACTTCCAGCGCACgg                 <  1:20518036/33‑2 (MQ=9)
                    cGGGTTAGCTTTATCAGCCACTTCCAGCGCACGAt                >  1:8342856/1‑35 (MQ=255)
                    cGGGTTAGCTTTATCAGCCACTTCCAGCGCACGAt                >  1:14151060/1‑35 (MQ=255)
                     ggtttAGCTTTATCAGCCACTTCCAGCGCACGATc               >  1:2071274/4‑35 (MQ=255)
                     gggTTAGCTTTATCAGCCACTTCCAGCGCACGATc               >  1:17865681/1‑35 (MQ=255)
                      gttttgttttccCAGCCACTTCCAGCGCACGATcc              >  1:4401152‑M1/13‑35 (MQ=255)
                      ggTTAGCTTTATCAGCCACTTCCAGCGCACGATcc              >  1:6036423/1‑35 (MQ=255)
                      ggTTAGCTTTATCAGCCACTTCCAGCGCACGATcc              >  1:18595652/1‑35 (MQ=255)
                      ggTTAGCTTTATCAGCCACTTCCAGCGCACGATcc              >  1:16423182/1‑35 (MQ=255)
                       tttATCTTTCCCAGCCACTTCCAGCGCACGATCCa             <  1:10433004/34‑1 (MQ=21)
                       tttAGTTTTACCAGCCACTTACAGCGCACGATCCa             <  1:6992829/34‑1 (MQ=25)
                        ttAGCTTTATCAGCCACTTCCAGCGCACGATCCAg            >  1:8371054/1‑35 (MQ=255)
                        ttAGCTTTATCAGCCACTTCCAGCGCACGATCCAg            >  1:16078131/1‑35 (MQ=255)
                         tgtttttccCAGCCACTTCCAGCGCACGATCCAgg           >  1:7584250‑M1/10‑35 (MQ=255)
                         tAGCTTTATCAGCCACTTCCAGCGCACGATCCAgg           >  1:11269768/1‑35 (MQ=255)
                         tAGCTTTATCAGCCACTTCCAGCGCACGATCCAgg           >  1:12997749/1‑35 (MQ=255)
                         gatttttccCAGCCACTTCCAGCGCACGATCCAgg           >  1:5657704‑M1/10‑35 (MQ=255)
                          gcttttccCAGCCACTTCCAGCGCACGATCCAGGc          >  1:4092945‑M1/9‑35 (MQ=255)
                          aGCTTTATCAGCCACTTCCAGCGCACGATCCAGGc          >  1:223299/1‑35 (MQ=255)
                           ttttcccCAGCCACTTCCAGCGCACGATCCAGGCt         >  1:402973‑M1/8‑35 (MQ=255)
                           ttttcccCAGCCACTTCCAGCGCACGATCCAGGCt         >  1:3222987‑M1/8‑35 (MQ=255)
                           gCTTTATCAGCCACTTCCAGCGCACGATCCAGGCt         >  1:10811627/1‑35 (MQ=255)
                           gCTTTATCAGCCACTTCCAGCGCACGATCCAGGCt         >  1:575500/1‑35 (MQ=255)
                            ttttccCAGCCACTTCCAGCGCACGATCCAGGCTa        >  1:291729‑M1/7‑35 (MQ=255)
                             tttATCAGCCACTTCCAGCGCACGATCCAGGCTat       >  1:10441684/1‑35 (MQ=255)
                             tttATCAGCCACTTCCAGCGCACGATCCAGGCTat       >  1:15946271/1‑35 (MQ=255)
                              tttcCAGCCACTTCCAGCGCACGATCCAGGCTatc      >  1:6839753‑M1/5‑35 (MQ=255)
                              ttATCAGCCACTTCCAGCGCACGATCCAGGCTatc      >  1:11578738/1‑35 (MQ=255)
                              tcccCAGCCACTTCCAGCGCACGATCCAGGCTatc      >  1:17651722‑M1/5‑35 (MQ=255)
                               tccCAGCCACTTCCAGCGCACGATCCAGGCTatca     >  1:12690684‑M1/4‑35 (MQ=255)
                               tATCAGCCACTTCCAGCGCACGATCCAGGCTatca     >  1:14047530/1‑35 (MQ=255)
                               tATCAGCCACTTCCAGCGCACGATCCAGGCTatca     >  1:16857002/1‑35 (MQ=255)
                                ccCAGCCCCTTCCAGCGCACGATCCAGGCTatcaa    >  1:6040154‑M1/3‑35 (MQ=255)
                                ccCAGCCACTTCCAGCGCACGATCCAGGCTatcaa    >  1:15979654‑M1/3‑35 (MQ=255)
                                 cCAGCCCCTTCCAGCGCACGATCCAGGCTatcaat   >  1:10651731‑M1/2‑35 (MQ=255)
                                  CAGCCACTTCCAGCGCACGATCCAGGctnncaann  <  1:19714097‑M1/35‑3 (MQ=255)
                                  CAGCCACTTCCAGCGCACGATCCAGGCTatcaatc  >  1:13942139‑M1/1‑35 (MQ=255)
                                  CAGCCACTTCCAGCGCACGATCCAGGCTatcaatc  <  1:7721059‑M1/35‑1 (MQ=255)
                                  CAGCCACTTCCAGCGCACGATCCAGGCTatcaatc  >  1:15643978‑M1/1‑35 (MQ=255)
                                  CAGCCACTTCCAGCGCACGATCCAGGCTatcaatc  <  1:9585492‑M1/35‑1 (MQ=255)
                                  |                                  
TCAACCATCGCAGACATATCCGGGTTAGCTTTATCAGCCACTTCCAGCGCACGATCCAGGCTATCAATC  >  REL606/2671642‑2671710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.