New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3656754 =92 (0.900)4 (0.070) 3/28 NT 7.1% coding (410/996 nt) yiaH conserved inner membrane protein
?REL606 = 4045305 51 (0.850)coding (165/1407 nt) yihP predicted transporter

Only 100 of 159 total aligned reads displayed.

AAAAGATAATGCCGCCATAGGTGCCTGGCAGCCCCAGAACGTCGGTATAAAACTTCAAAAGATAAAGCG  >  REL606/4045271‑4045339
                                  |                                  
aaaaGATAATGCCTCCATAGGTGCCTGGCAGcccc                                    >  1:2313675/1‑35 (MQ=255)
aaaaGATAATGCCGCCATAGGTGCCTGGCAGcccc                                    >  1:9425885/1‑35 (MQ=255)
aaaaGATAATGCCGCCATAGGTGCCTGGCAGcccc                                    >  1:11635141/1‑35 (MQ=255)
 aaaGATAATGCCGCCATAGGTGCCTGGCAGCCCCa                                   <  1:324298‑M2/35‑2 (MQ=255)
 aaaGATAATGCCGCCATAGGTGCCTGGCAGCCCCa                                   <  1:16584042‑M2/35‑2 (MQ=255)
 aaaGATAATGCCGCCATAGGTGCCTGGCAGCCCCa                                   <  1:6395353‑M2/35‑2 (MQ=255)
 aaaGATAATGCCGCCATAGGTGCCTGGCAGCCCCa                                   <  1:6701251‑M2/35‑2 (MQ=255)
 aaaGATAATGCCGCCATAGGTGCCTGGCAGCCCCa                                   <  1:12847364‑M2/35‑2 (MQ=255)
  aaGATAATGCCGCCATAGGTGCCTGGCAGCCCCag                                  <  1:736012‑M2/35‑3 (MQ=255)
   aGATAATGCCGCCATAGGTTCCTGGCAGCCCCaga                                 <  1:1534504‑M2/35‑4 (MQ=255)
   aGATAATGCCGCCATAGGTGCCTGGCAGCCCCaga                                 <  1:11462184‑M2/35‑4 (MQ=255)
   aGATAATGCCGCCATAGGTGCCTGGCAGCCCCaga                                 <  1:14318973‑M2/35‑4 (MQ=255)
    gATAATGCCGCCATAGGTGCCTGGCAGCCCCagaa                                <  1:17993828‑M2/35‑5 (MQ=255)
     aTAATGCCGCCATAGGTGCCTGGCAGCCCCagaac                               <  1:16090883‑M2/35‑6 (MQ=255)
      tAATGCCGCCATAGGTGCCTGGCAGCCCCagaacg                              <  1:2098833‑M2/35‑7 (MQ=255)
      tAATGCCGCCATAGGTGCCTGGCAGCCCCagaacg                              <  1:13663131‑M2/35‑7 (MQ=255)
      tAATGCCGCCATAGGTGCCTGGCAGCCCCagaacg                              <  1:8674602‑M2/35‑7 (MQ=255)
       aaTGCCGCCATAGGTGCCTGGCAGCCCCagaacgt                             <  1:12176396‑M2/35‑8 (MQ=255)
       aaTGCCGCCATAGGTGCCTGGCAGCCCCagaacgt                             <  1:16825966‑M2/35‑8 (MQ=255)
       aaTGCCGCCATAGGTGCCTGGCAGCCCCagaacgt                             <  1:1094176‑M2/35‑8 (MQ=255)
        gccccgccataGGTGCCTGGCAGCCCCagaacgtc                            >  1:5120442‑M2/4‑27 (MQ=255)
        cccccgccataGGTGCCTGGCAGCCCCagaacgtc                            >  1:7821823‑M2/4‑27 (MQ=255)
        cccccgccataGGTGCCTGGCAGCCCCagaacgtc                            >  1:3915377‑M2/4‑27 (MQ=255)
        cccccgccataGGTGCCTGGCAGCCCCagaacgtc                            >  1:4068314‑M2/4‑27 (MQ=255)
        cccccgccataGGTGCCTGGCAGCCCCagaacgtc                            >  1:5743883‑M2/4‑27 (MQ=255)
        cccccgccATAGGTGCCTGGCAGCACCAGAACGTc                            <  1:3152571/32‑1 (MQ=25)
        aTGCCGCCATAGGTGCCTGGCAGCCCCagaacgtc                            <  1:9268650‑M2/35‑9 (MQ=255)
        aTGCCGCCATAGGTGCCTGGCAGCCCCagaacgtc                            <  1:19362577‑M2/35‑9 (MQ=255)
        aTGCCGCCATAGGTGCCTGGCAGCCCCagaacgtc                            <  1:13451379‑M2/35‑9 (MQ=255)
        aTGCCGCCATAGGTGCCTGGCAGCCCCagaacgtc                            <  1:11563066‑M2/35‑9 (MQ=255)
         tGCCGCCATAGGTGCCTGGCAGCCCCagaacgtcg                           <  1:6172956‑M2/35‑10 (MQ=255)
         tGCCGCCATAGGTGCCTGGCAGCCCCagaacgtcg                           <  1:828138‑M2/35‑10 (MQ=255)
         tGCCGCCATAGGTGCCTGGCAGCCCCagaacgtcg                           <  1:20328470‑M2/35‑10 (MQ=255)
          cccgccaTAGGTGCCTGGCAGCCCCagaacgtcgg                          >  1:18272024‑M2/2‑25 (MQ=255)
           ccgccATAGGTGCCTGGCATCCCCagaacgtcggg                         <  1:15061927‑M2/35‑12 (MQ=255)
           ccgccATAGGTGCCTGGCAGCCCCAGAACGTCGGt                         <  1:11956191/35‑1 (MQ=255)
           ccgccATAGGTGCCTGGCAGCCCCAGAACGTCGGt                         <  1:3664270/35‑1 (MQ=255)
            cgccATAGGTGCCTGGCATCCCCAGAACGTCgggg                        >  1:3047281/1‑33 (MQ=37)
            cgccATAGGTGCCTGGCAGCCCCagaacgtcgggt                        <  1:1913319‑M2/35‑13 (MQ=255)
            cgccATAGGTGCCTGGCAGCCCCagaacgtcgggg                        <  1:18236714‑M2/35‑13 (MQ=255)
            cgccATAGGTGCCTGGCAGCCCCagaacgtcgggg                        <  1:2699706‑M2/35‑13 (MQ=255)
            cgccATAGGTGCCTGGCAGCCCCAGAACGTCGGta                        <  1:16260032/35‑1 (MQ=255)
            cgccATAGGTGCCTGGCAGCCCCAGAACGTCGGta                        <  1:10720176/35‑1 (MQ=255)
            cgccATAGGTGCCTGGCAGCCCCAGAACGGCggga                        >  1:9136610/1‑33 (MQ=38)
             gccATAGGTGCCTGTCAGCCCCAGAACGTCggggg                       >  1:8338389/1‑32 (MQ=25)
             gccATAGGTGCCTGGCAGCCCCagaacgtcggggt                       <  1:17194179‑M2/35‑14 (MQ=255)
             gccATAGGTGCCTGGCAGCCCCagaacgtcggggt                       <  1:5760073‑M2/35‑14 (MQ=255)
             gccATAGGTGCCTGGCAGCCCCAGAACGTCGGtat                       <  1:1842888/35‑1 (MQ=255)
             gccATAGGTGCCTGGCAGCCCCAGAACGTCGGtat                       <  1:19611046/35‑1 (MQ=255)
             gccATAGGCGCCTGGCAGCCCCAGAACGTCggggt                       >  1:8069790/1‑32 (MQ=37)
             gcaaTAGGTGCCTGGCAGCCCCAGAACGTAGGtat                       <  1:15832705/32‑1 (MQ=37)
              ccATGGGTGCCTGGCAGCCCCAGAACGTCGGtata                      <  1:15722214/35‑1 (MQ=255)
              ccATAGGTGCCTTGCAGCCCCAGAACGTCGGtata                      <  1:2611558/35‑1 (MQ=255)
              ccATAGGTGCCTGGCAGCCCCAGAACGTCGGtata                      <  1:14800791/35‑1 (MQ=255)
               cATAGGTGCCTGGCAGCCCCagaacgtcgggggaa                     <  1:12473131‑M2/35‑16 (MQ=255)
               cATAGGTGCCTGGCAGCCCCAGAACGTCGGTATaa                     <  1:12247242/35‑1 (MQ=255)
               cATAGGTGCCTGGCAGCCCCAGAACGTCGGTATaa                     <  1:8049307/35‑1 (MQ=255)
               cATAGGTGCCTGGCAGCCCCAGAACGTCGGGATaa                     >  1:20051461/1‑35 (MQ=255)
               cATAGGTGCCTGGCAGCCCCAGAACGTCGGGATaa                     >  1:10010735/1‑35 (MQ=255)
                aTAGGTGCCTGGCAGCCCCagaacgtcgggggaaa                    <  1:3516354‑M2/35‑17 (MQ=255)
                aTAGGTGCCTGGCAGCCCCAGAACGTCGGTATaaa                    <  1:1919143/35‑1 (MQ=255)
                aTAGGTGCCTGGCAGCCCCAGAACGTCGGTATaaa                    <  1:11488764/35‑1 (MQ=255)
                aTAGGTGCCTGGCAGCCCCAGAACGTCGGTATaaa                    <  1:10415657/35‑1 (MQ=255)
                aTAGGTGCCTGGCAGCCCCAGAACGTCGGGGTaaa                    >  1:1924393/1‑35 (MQ=37)
                aTAGGTGCCTGGCAGCCCCAGAACGTCGGGAAaaa                    >  1:4830046/1‑35 (MQ=37)
                aTAGGTCCCTGGCAGCCCCAGAACGTCGGTATaaa                    <  1:16865349/35‑1 (MQ=255)
                 tAGGTGCCTGGCAGCCCCagaacgtcgggggaaaa                   <  1:10969683‑M2/35‑18 (MQ=255)
                 tAGGTGCCTGGCAGCCCCagaacgtcgggggaaaa                   <  1:7237962‑M2/35‑18 (MQ=255)
                  aGGTGCCTGGCAGCCCCagaacgtcgggggaaaaa                  <  1:5868579‑M2/35‑19 (MQ=255)
                  aGGTGCCTGGCAGCCCCAGAACGTCGGTATAAAAc                  <  1:4632349/35‑1 (MQ=255)
                  aGGTGCCTGGCAGCCCCAGAACGTCGGGGTaaaaa                  >  1:12740755/1‑34 (MQ=25)
                   ggTGCCTGGCAGCCCCAGAACGTCGGTATAAAACt                 <  1:15111786/35‑1 (MQ=255)
                   ggTGCCTGGCAGCCCCAGAACGTCGGTATAAAACt                 <  1:7715137/35‑1 (MQ=255)
                   ggTGCCTGGCAGCCCCAGAACGTCGGTATAAAACt                 <  1:10141272/35‑1 (MQ=255)
                    ggtccTGCCAGCCCCAGAACGTCGGTATAAAACtt                <  1:9344114/32‑1 (MQ=38)
                    gTGCCTGGCAGCCCCAGAACGTCGGTATAAAACtt                <  1:14936715/35‑1 (MQ=255)
                    gTGCCTGGCAGCCCCAGAACGTCGGTATAAAACtt                <  1:5883601/35‑1 (MQ=255)
                    gTGCCTGGCAGCCCCAGAACGTCGGTATAAAACtt                <  1:16909943/35‑1 (MQ=255)
                    gTGCCTGGCAGCCCCAGAACGTCGGTATAAAACtt                <  1:17716331/35‑1 (MQ=255)
                     tGCCTGGCAGCCCCAGAACGTCGGTATAAAACTTc               <  1:4597275/35‑1 (MQ=255)
                      gCCTGGCAGCCCCAGAACGTCGGTATAAAACTTCa              <  1:4701906/35‑1 (MQ=255)
                      gCCTGGCAGCCCCAGAACGTCGGTATAAAACTTCa              <  1:8133639/35‑1 (MQ=255)
                      gCCTGGCAGCCCCAGAACGTCGGTATAAAACTTCa              <  1:7741764/35‑1 (MQ=255)
                       ccTGGCAGCCCCAGAACGTCGGTATAAAACTTCaa             <  1:887780/35‑1 (MQ=255)
                       ccTGGCAGCCCCAGAACGTCGGTATAAAACTTCaa             <  1:9724036/35‑1 (MQ=255)
                        cgggCAGCCCCAGAACGTCGGTATAAAACTTCaaa            <  1:10416794/33‑1 (MQ=255)
                         tGGCAGCCCCAGAACGTCGGTATAAAACTTCaaaa           <  1:3839922/35‑1 (MQ=255)
                          ggCAGCCCCAGAACGTCGGTATAAAACTTCAAAAg          <  1:15326352/35‑1 (MQ=255)
                           gCAGCCCCAGAACGTCGGTATAAAACTTCAAAAGa         <  1:15904330/35‑1 (MQ=255)
                           gCAGCCCCAGAACGTCGGGGTAAAACTTCaaaaaa         >  1:6773500/1‑33 (MQ=25)
                             aGCCCCAGAACGTCGGTATAAAACTTCAAAAGATa       <  1:19822818/35‑1 (MQ=255)
                              gCCCCAGAACGTCGGTATAAAACTTCAAAAGATaa      <  1:9149505/35‑1 (MQ=255)
                              gCCCCAGAACGTCGGTATAAAACTTCAAAAGATaa      <  1:20552379/35‑1 (MQ=255)
                                cccAGAACGTCGGTATAAAACTTCAAAAGATAAAg    <  1:11912141/35‑1 (MQ=255)
                                cccAGAACGTCGGTATAAAACTTCAAAAGATAAAg    <  1:11759095/35‑1 (MQ=255)
                                cccAGAACGTCGGTATAAAACTTCAAAAGATAAAg    <  1:6429703/35‑1 (MQ=255)
                                cccAGAACGTCGGTATAAAACTTCAAAAGATAAAg    <  1:16404797/35‑1 (MQ=255)
                                cccAGAACGTCGGTATAAAACTTCAAAAGATAAAg    <  1:175624/35‑1 (MQ=255)
                                cccAGAACGTCGGTATAAAACTTCAAAAGATAAAg    <  1:178547/35‑1 (MQ=255)
                                  cAGAACGTCGGTATAAAACTTCAAAAGATAAAGCg  <  1:19889450/35‑1 (MQ=255)
                                  |                                  
AAAAGATAATGCCGCCATAGGTGCCTGGCAGCCCCAGAACGTCGGTATAAAACTTCAAAAGATAAAGCG  >  REL606/4045271‑4045339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.