New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2926199 =70 (0.680)14 (0.180) 5/36 NT 18.0% coding (378/408 nt) ygfX hypothetical protein
?REL606 3944634 = 75 (0.970)intergenic (+23/‑124) proM/aslB tRNA‑Pro/predicted regulator of arylsulfatase activity

Only 100 of 181 total aligned reads displayed.

ATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGC  >  REL606/2926165‑2926233
                                  |                                  
ggaaagtgacgaaatgcacagaaaacaaaaaaccc                                    >  1:3556642‑M1/35‑35 (MQ=255)
atctttatctttGCGTCTCTTGTTGCAACAAAATc                                    <  1:9486768/35‑1 (MQ=255)
atctttatctttGCGTCTCTTGTTGCAACAAAATc                                    <  1:1119547/35‑1 (MQ=255)
atctttatctttGCGTCTCTTGTTGCAACAAAATc                                    <  1:13840441/35‑1 (MQ=255)
 tctttatctttGCGTCTCTTGTTGCAACAAAATcc                                   <  1:20135737/35‑1 (MQ=255)
 tctttatctttGCGTCTCTTGCTGCAACAAAATcc                                   <  1:19607840/35‑1 (MQ=255)
 gaaagtgacgaaatgcacagaaaacaaaaaacccc                                   >  1:9556799‑M1/34‑35 (MQ=255)
 gaaagtgacgaaatgcacagaaaacaaaaaacccc                                   <  1:5552225‑M1/2‑1 (MQ=255)
 gaaagtgacgaaatgcacagaaaacaaaaaacccc                                   >  1:5763161‑M1/34‑35 (MQ=255)
 gaaagtgacgaaatgcacagaaaacaaaaaacccc                                   >  1:7161502‑M1/34‑35 (MQ=255)
  ctttatctttGCGTCTCTTGTTGCAACAAAATccg                                  <  1:2389036/35‑1 (MQ=255)
  ctttatctttGCGTCTCTTGTTGCAACAAAATccg                                  >  1:15405731/1‑35 (MQ=255)
  ctttatctttGCGTCTCTTGTTGCAACAAAATccg                                  >  1:7438769/1‑35 (MQ=255)
  ctttatctttGCGTCTCTTGTTGCAACAAAATccg                                  <  1:14351198/35‑1 (MQ=255)
  ctttatctttGCGTCTCTTGTTGCAACAAAATccg                                  <  1:14339373/35‑1 (MQ=255)
  ctttatctttGCGTCTCTTGTTGCAACAAAATccg                                  <  1:824190/35‑1 (MQ=255)
  ctttatctttGCGTCTCTTGTTGCAACAAAATccg                                  >  1:8944577/1‑35 (MQ=255)
  aaagtgacgaaatgcacagaaaacaaaaaaccccg                                  >  1:17941025‑M1/33‑35 (MQ=255)
  aaagtgacgaaatgcacagaaaacaaaaaaccccg                                  >  1:22223‑M1/33‑35 (MQ=255)
  aaagtgacgaaatgcacagaaaacaaaaaaccccg                                  >  1:14295387‑M1/33‑35 (MQ=255)
  aaagtgacgaaatgcacagaaaacaaaaaaccccg                                  >  1:7968664‑M1/33‑35 (MQ=255)
  aaagtgacgaaatgcacagaaaacaaaaaaccccg                                  >  1:13963036‑M1/33‑35 (MQ=255)
  aaagtgacgaaatgcacagaaaacaaaaaaccccg                                  >  1:30585‑M1/33‑35 (MQ=255)
  aaagtgacgaaatgcacagaaaacaaaaaaccccg                                  >  1:16661892‑M1/33‑35 (MQ=255)
   tttatctttGCGTCTCTTGTTGCAACAAAATccgc                                 >  1:11968592/1‑35 (MQ=255)
   aagtgacgaaatgcacagaaaacaaaaaaccccgc                                 <  1:10543739‑M1/4‑1 (MQ=255)
   aagtgacgaaatgcacagaaaacaaaaaaccccgc                                 <  1:12134190‑M1/4‑1 (MQ=255)
   aagtgacgaaatgcacagaaaacaaaaaaccccgc                                 >  1:18261777‑M1/32‑35 (MQ=255)
    ttatctttGCGTCTCTTGTTGCAACAAAATccgcc                                <  1:5471378/35‑1 (MQ=255)
    ttatctttGCGTCTCTTGTTGCAACAAAATccgcc                                >  1:11425284/1‑35 (MQ=255)
      atctttGCGTCTCTTGTTGCAACAAAATCCGCCGt                              >  1:13381615/1‑35 (MQ=255)
      atctttGCGTCTCTTGTTGCAACAAAATCCGCCGt                              >  1:4417801/1‑35 (MQ=255)
        ctttGCGTCTCTTGTTGCAACAAAATCCGCCGTaa                            >  1:17468178/1‑35 (MQ=255)
         tttGCGTCTCTTGTTGCAACAAAATCCGCCGTaaa                           >  1:17388042/1‑35 (MQ=255)
         tttGCGTCTCTTGTTGCAACAAAATCCGCCGTaaa                           >  1:12356850/1‑35 (MQ=255)
         tttGCGTCTCCTGTTGCAACAAAATCCGCCGTaaa                           >  1:14532327/1‑35 (MQ=255)
         tttGCGCCTCTTGTTGCAACAAAATCCGCCGTaaa                           >  1:14028931/1‑35 (MQ=255)
           tGCGTCTCTTGTTGCAACAAAATCCGCCTTAAATc                         >  1:4221407/1‑35 (MQ=255)
           tGCGTCTCTTGTTGCAACAAAATCCGCCGGAAATc                         >  1:1908357/1‑35 (MQ=255)
            gCGTCTCTTGTTGCAACAAAATCCGCCGTAAATcc                        >  1:390330/1‑35 (MQ=255)
            gCGTCTCTTGTTGCAACAAAATCCGCCGTAAATcc                        >  1:15964635/1‑35 (MQ=255)
            gCGTCTCTTGTTGCAACAAAATCCGCCGTAAATcc                        >  1:8535110/1‑35 (MQ=255)
             cGTCTCTTGTTGCAACAAAATCCGCCGTAAATccc                       >  1:13174582/1‑35 (MQ=255)
             cGTCTCTTGTTCCAACAAAATCCGCCGTAAATccc                       >  1:411699/1‑35 (MQ=255)
              gTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCg                      >  1:17709824/1‑35 (MQ=255)
              gTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCg                      <  1:12345383/35‑1 (MQ=255)
                 tctTGTTGCAACAAAATCCGCCGTAAATCCCGCCa                   >  1:15980220/1‑35 (MQ=255)
                  ctTGTTGCAACAAAATCCGCCGTAAATCCCGCCAt                  >  1:9234715/1‑35 (MQ=255)
                  ctTGTTGCAACAAAATCCGCCGTAAATCCCGCCAt                  >  1:3445042/1‑35 (MQ=255)
                   ttgttgCAACAAAATCCGCCGTAAATCCCGCCAtt                 >  1:4745237/1‑35 (MQ=255)
                    tgttgCAACAAAATCCGCCGTAAATCCCGCCATTc                >  1:583748/1‑35 (MQ=255)
                    tgttgCAACAAAATCCGCCGTAAATCCCGCCATTc                >  1:14871899/1‑35 (MQ=255)
                    tgttgCAACAAAATCCGCCGTAAATCCCGCCATTc                >  1:12069719/1‑35 (MQ=255)
                    tgttgCAACAAAATCCGCCGTAAATCCCGCCATTc                >  1:8987320/1‑35 (MQ=255)
                    tgttgCAACAAAATCCGCCGTAAATCCCGCAATTc                >  1:15915066/1‑35 (MQ=255)
                     gttgCAACAAAATCCGCCGTAAATCCCGCCATTCa               >  1:10302571/1‑35 (MQ=255)
                       tgCAACAAAATCCGCCGTAAATCCCGCCATTCAGc             >  1:16353546/1‑35 (MQ=255)
                        gCAACAAAATCCGCCGTAAATCCCGCCATTCAGCt            >  1:5160478/1‑35 (MQ=255)
                        gCAACAAAATCCGCCGTAAATCCCGCCATTCAGCt            >  1:16820340/1‑35 (MQ=255)
                        acaaaaaaccCCGCCGTAAATCCCGCCATTCAGCt            >  1:20229646‑M1/11‑35 (MQ=255)
                         caacaaAATCCGCCGTAAATCCCGCCATTCAGCtt           >  1:4588178/1‑35 (MQ=255)
                         caacaaAATCCGCCGTAAATCCCGCCATTCAGCtt           >  1:9010220/1‑35 (MQ=255)
                         caacaaAATCCGCCGTAAATCCCGCCATTCAGCtt           >  1:6786780/1‑35 (MQ=255)
                         caaaaaaccCCGCCGTAAATCCCGCCATTCAGCtt           >  1:14281889‑M1/10‑35 (MQ=255)
                         aaaaaaaccCCGCCGTAAATCCCGCCATTCAGCtt           >  1:552348‑M1/10‑35 (MQ=255)
                          aacaaAATCCGCCGTAAATCCCGCCATTCAGCTTc          >  1:12117157/1‑35 (MQ=255)
                          aacaaAATCCGCCGTAAATCCCGCCATTCAGCTTc          >  1:4934994/1‑35 (MQ=255)
                          aaaaagccCCGCCGTAAATCCCGCCATTCAGCTTc          >  1:1767606‑M1/9‑35 (MQ=255)
                          aaaaaaacCCGCCGTAAATCCCGCCATTCAGCTTc          >  1:20471068‑M1/9‑35 (MQ=255)
                           acaaAATCCGCCGTAAATCCCGCCATTCAGCTTCg         >  1:10010464/1‑35 (MQ=255)
                           acaaAATCCGCCGTAAATCCCGCCATTCAGCTTCg         >  1:19887586/1‑35 (MQ=255)
                           aaaaaccCCGCCGTAAATCCCGCCATTCAGCTTCg         >  1:18576839‑M1/8‑35 (MQ=255)
                           aaaaaccCCGCCGTAAATCCCGCCATTCAGCTTCg         >  1:15115286‑M1/8‑35 (MQ=255)
                            caaAATCCGCCGTAAATCCCGCCATTCAGCTTCGt        >  1:12517712/1‑35 (MQ=255)
                            caaAATCCGCCGTAAATCCCGCCATTCAGCTTCGt        >  1:13001239/1‑35 (MQ=255)
                            caaAATCCGCCGTAAATCCCGCCATTCAGCTTCGt        >  1:669019/1‑35 (MQ=255)
                            aaaaccCCGCCGTAAATCCCGCCATTCAGCTTCGt        >  1:11101133‑M1/7‑35 (MQ=255)
                            aaaaccCCGCCGTAAATCCCGCCATTCAGCTTCGt        >  1:19695177‑M1/7‑35 (MQ=255)
                            aaaaaCCAGCCGTAAATCCCGCCATTCAGCTTCGt        <  1:20054988/34‑1 (MQ=37)
                             aaaaTCCGCCGTAAATCCCGCCATTCAGCTTCGTc       >  1:1914131/1‑35 (MQ=255)
                             aaaaTCCGCCGTAAATCCCGCCATTCAGCTTCGTc       >  1:8801554/1‑35 (MQ=255)
                             aaaaTCCGCCGTAAATCCCGCCATTCAGCTTCGTc       >  1:13090724/1‑35 (MQ=255)
                              acccCCGCCGTAAATCCCGCCATTCAGCTTCGTcc      >  1:12932003‑M1/5‑35 (MQ=255)
                              aaaTCCGCCGTAAATCCCGCCATTCAGCTTCGTcc      >  1:2940749/1‑35 (MQ=255)
                               aaTCCGCCTTAAATCCCGCCATTCAGCTTCGTCCa     >  1:14539833/1‑35 (MQ=255)
                                ntCCGCCGTAAATCCCGCCATTCAGCTTCGTccct    >  1:7301779/2‑33 (MQ=255)
                                ccCCGCCGTAAACCCCGCCATTCAGCTTCGTCCAt    >  1:6345010‑M1/3‑35 (MQ=255)
                                ccCCCCCGTAAATCCCGCCATTCAGCTTCGTCCAt    >  1:5764306‑M1/3‑35 (MQ=255)
                                aTCCGCCGTAAATCCCGCCATTCAGCTTCGTCCAt    >  1:14885057/1‑35 (MQ=255)
                                 tCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATg   >  1:14072764/1‑35 (MQ=255)
                                 tCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATg   >  1:86455/1‑35 (MQ=255)
                                 cCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATg   >  1:8437052‑M1/2‑35 (MQ=255)
                                 cCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATg   >  1:17195392‑M1/2‑35 (MQ=255)
                                 cCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATg   >  1:18203178‑M1/2‑35 (MQ=255)
                                 cCCGCCGTAAACCCCGCCATTCAGCTTCGTCCATg   >  1:944106‑M1/2‑35 (MQ=255)
                                  CCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGc  >  1:14647747‑M1/1‑35 (MQ=255)
                                  CCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGc  <  1:18419885‑M1/35‑1 (MQ=255)
                                  CCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGc  >  1:20598345‑M1/1‑35 (MQ=255)
                                  CCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGc  <  1:10721629‑M1/35‑1 (MQ=255)
                                  CCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGc  <  1:1008634‑M1/35‑1 (MQ=255)
                                  |                                  
ATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGC  >  REL606/2926165‑2926233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.