New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1183967 | 102 (0.990) | 18 (0.180) | 7/48 | NT | 19.3% | intergenic (+43/+40) | ycfR/ycfS | hypothetical protein/hypothetical protein |
? | REL606 | = 3012564 | 49 (0.480) | coding (248/1020 nt) | ECB_02814 | conserved hypothetical protein |
CTGATTTTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1183954‑1183967 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGACATGCCCTGATTTACCCATTCCTGAAAGAA < REL606/3012564‑3012531 CTGACTTTTTCCCCCCGACATGCCCTGATTTACCC < 1:19881503/35‑1 gtTTTTTTCCCCCCGACATGCCCTGATTTACCCAT < 1:5976034/33‑1 cTTTTTCCCCCCCGACATGCCCTGATTTACCCATT < 1:6435111/34‑1 ATTTTTCCCCCCCGACATGCCCTGATTTACCCATT < 1:12583644/35‑1 ATTTTTCCCCCCCGACATGCCCTGATTTACCCATT < 1:18387730/35‑1 cTTTTCCCCCCCGACATGCCCTGATTTACCCATTC < 1:17640164/34‑1 aTTTTTCCCCCCGACATGCCCTGATTTACCCATTC < 1:17617533/34‑1 TTTTTCCCCCCCGACATGCCCTGATTTACCCATTC < 1:9661755/35‑1 TTTTTCCCCCCCGACATGCCCTGATTTACCCATTC < 1:7897060/35‑1 TTTTTCCCCCCCGACATGCCCTGATTTACCCATTC < 1:19795009/35‑1 TTTTTCCCCCCCGACATGCCCTGATTTACCCATTC < 1:15703514/35‑1 TTTTTCCCCCCCGACATGCCCTGATTTACCCATTC < 1:14609295/35‑1 TTTTCCCCCCCGACATGCCCTGATTTACCCATTCC < 1:15009878/35‑1 TTTTCCCCCCCGACATGCCCTGATTTACCCATTCC < 1:9064727/35‑1 TTTTCCCCCCGACATGCCCTGATTTACCCATTCCT < 1:9118992/35‑1 TTTCCCCCCCGACATGCCCTGATTTACCCATTCCT < 1:13313666/35‑1 ttcCCCCCCGACATGCCCTGATTTACCCATTCCTG < 1:13560055/32‑1 TTTACCCCCGACATGCCCTGATTTACCCATTCCTG < 1:15240856/35‑1 tgCCCCCCGACATGCCCTGATTTACCCATTCCTGA < 1:13754556/33‑1 ccCCCCCCGACATGCCCTGATTTACCCATTCCTGA < 1:5796092/33‑1 TTCCCCCCGACATGCCCTGATTTACCCATTCCTGA < 1:17009617/35‑1 cCCCCCCGACATGCCCTGATTTACCCATTCCTGAA < 1:14659518/34‑1 cCCCCCCGACATGCCCTGATTTACCCATTCCTGAA < 1:8579810/34‑1 CCCCGACATGCCCTGATTTACCCATTCCTGAAAGA < 1:898843/35‑1 CCCCGACATGCCCTGATTTACCCATTCCTGAAAGA < 1:1125036/35‑1 CCCGACATGCCCTGATTTACCCATTCCTGAAAGAA < 1:18680286/35‑1 CTGATTTTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1183954‑1183967 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGACATGCCCTGATTTACCCATTCCTGAAAGAA < REL606/3012564‑3012531 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |