New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 218779 | 70 (0.680) | 12 (0.160) | 4/36 | NT | 15.1% | coding (669/711 nt) | cutF | lipoprotein involved with copper homeostasis and adhesion |
? | REL606 | 4525951 = | 82 (1.060) | intergenic (+8/‑59) | fimC/fimD | chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis |
Only 100 of 185 total aligned reads displayed.
CGCCGACTAAAGTATTGGCACCCGATACGGCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGG > REL606/218745‑218813 | cgcCGACTAAAGTATTGGCGCCCGATACGGCAGGG < 1:9156747‑M1/35‑1 (MQ=255) cgcCGACTAAAGTATTGGCACCCGATACGGCAGGG > 1:13880529‑M1/1‑35 (MQ=255) cgcCGACTAAAGTATTGGCACCCGATACGGCAGGG < 1:8391993‑M1/35‑1 (MQ=255) gcCGACTAAAGTATTGGCACCCGATACGGCAGGGg > 1:16399097‑M1/1‑34 (MQ=255) gcCGACTAAAGTATTGGCACCCGATACGGCAGGGg > 1:7561081‑M1/1‑34 (MQ=255) gcCGACTAAAGTATTGGCACCCGATACGGCAGGGg > 1:19174817‑M1/1‑34 (MQ=255) cGACTAAAGTATTGGCACCCGATACGGCAGGGgga > 1:2848623‑M1/1‑32 (MQ=255) cGACTAAAGTATTGGCACCCGATACGGCAGGGgaa > 1:15791387‑M1/1‑32 (MQ=255) cGACTAAAGTATTGGCACCCGATACGGCAGGGgaa > 1:18386941‑M1/1‑32 (MQ=255) cGACTAAAGTATTGGCACCCGATACGGCAGGGaaa < 1:1948957/35‑1 (MQ=255) gACTAAAGTATTGGCACCCGATACGGCAGGGggaa > 1:5695669‑M1/1‑31 (MQ=255) gACTAAAGTATTGGCACCCGATACGGCAGGGgaaa > 1:12674645‑M1/1‑31 (MQ=255) gACTAAAGTATTGGCACCCGATACGGCAGGGAAAt < 1:2250015/35‑1 (MQ=255) aaCTAAAGTATTGGCACCCGATACGGCAGGGAAAt < 1:6909584/34‑1 (MQ=255) tAAAGTATTGGCACCCGATACGGCAGGGgaaattt > 1:10413840‑M1/1‑28 (MQ=255) aaaGTATTGGCACCCGATACGGCAGGGggagtttt > 1:9596957‑M1/1‑27 (MQ=255) aaaGTATTGGCACCCGATACGGCAGGGggaatttt > 1:2193919‑M1/1‑27 (MQ=255) aaaGTATTGGCACCCGATACGGCAGGGggaatttt > 1:11476071‑M1/1‑27 (MQ=255) aaaGTATTGGCACCCGATACGGCAGGGAAATTTTa < 1:19360299/35‑1 (MQ=255) aaGTATTGGCACCCGATACGGCAGGGggaattttt > 1:6265302‑M1/1‑26 (MQ=255) aaGTATTGGCACCCGATACGGCAGGGggaattttt > 1:16995739‑M1/1‑26 (MQ=255) aaGTATTGGCACCCGATACGGCAGGGAAATTTTAc < 1:9765582/35‑1 (MQ=255) aGTATTGGCACCCGATACGGCAGGGggaattttac > 1:12182402‑M1/1‑25 (MQ=255) gTATTGGCACCCGATACGGCAGGGggaattttccc > 1:14538603‑M1/1‑24 (MQ=255) gTATTGGCACCCGATACGGCAGGGAAATTTTAccc < 1:18963960/35‑1 (MQ=255) tATTGGCACCCGATACGGCAGGGGGAATTTAcccc > 1:16655826/1‑35 (MQ=25) aTTGGCACCCGATACGGCAGGGAAATTTTACCCCa < 1:12337839/35‑1 (MQ=255) ttGGCACCCGATACGGCAGGGAAATTTTACCCCaa < 1:8731206/35‑1 (MQ=255) ttGGCACCCGATACGGCAGGGAAATTTTACCCCaa < 1:6546190/35‑1 (MQ=255) tGGCGCCCGATACGGCAGGGAAATTTTACCCCAAc < 1:7747207/35‑1 (MQ=255) tGGCACCCGATACGGCAGGGAAATTTTACCCCAAc < 1:5726752/35‑1 (MQ=255) tGGCACCCGATACGGCAGGGAAATTTTACCCCAAc < 1:9025916/35‑1 (MQ=255) ggCACCCGATACGGCAGGGAAATTTTACCCCAAcc < 1:3129734/35‑1 (MQ=255) gCACCCGATACGGCAGGGAAATTTTACCCCAACCa < 1:3316900/35‑1 (MQ=255) gCACCCGATACGGCAGGGAAATTTTACCCCAACCa < 1:7025449/35‑1 (MQ=255) gCACCCGATACGGCAGGGAAATTTTACCCCAACCa < 1:4363829/35‑1 (MQ=255) cACCCGATACGGCAGGGAAATTTTACCCCAACCAg < 1:7131564/35‑1 (MQ=255) cACCCGATACGGCAGGGAAATTTTACCCCAACCAg < 1:560729/35‑1 (MQ=255) aCCCGATACGGCAGGGAAATTTTACCCCAACCAgg < 1:16182453/35‑1 (MQ=255) aCCCGATACGGCAGGGAAATTTTACCCCAACCAgg < 1:1617138/35‑1 (MQ=255) aCCCGATACGGCAGGGAAATTTTACCCCAACCAgg < 1:3512531/35‑1 (MQ=255) cccGATACGGCAGGGAAATTTTACCCCAACCAGGa < 1:19090185/35‑1 (MQ=255) ccGATACGGCAGGGAAATTTTACCCCAACCAGGAt < 1:11977603/35‑1 (MQ=255) ccGATACGGCAGGGAAATTTTACCCCAACCAGGAt < 1:429107/35‑1 (MQ=255) ccGATACGGCAGGGAAATTTTACCCCAACCAGGAt < 1:18415766/35‑1 (MQ=255) cGATACGGCAGGGAAATTTTACCCCAACCAGGAtt < 1:17819030/35‑1 (MQ=255) tACGGCAGGGAAATTTTACCCCAACCAGGATTGCa < 1:2535566/35‑1 (MQ=255) tACGGCAGGGAAATTTTACCCCAACCAGGATTGCa < 1:6133315/35‑1 (MQ=255) aCGGCAGGGAAATTTTACCCCAACCAGGATTGCag < 1:2393653/35‑1 (MQ=255) cGGCAGGGAAATTTTACCCCAACCAGGATTGCagt < 1:2010917/35‑1 (MQ=255) tctaGGGAAATTTTACCCCAACCAGGATTGCagta < 1:11152587/32‑1 (MQ=255) ggCAGGGAAATTTTACCCCAACCAGGATTGCagta > 1:4486236/1‑35 (MQ=255) ggCAGGGAAATTTTACCCCAACCAGGATTGCagta < 1:15386912/35‑1 (MQ=255) gCAGGGggaatttttcgcctgaataaaaagaattt > 1:14827107‑M1/1‑6 (MQ=255) gCAGGGggaatttttcgcctgaataaaaagaattg < 1:12106845‑M1/35‑30 (MQ=255) gCAGGGggaatttttcgcctgaataaaaagaattg > 1:5956050‑M1/1‑6 (MQ=255) gCAGGGggaatttttcgcctgaataaaaagaattg > 1:12035112‑M1/1‑6 (MQ=255) gCAGGGggaatttttcgcctgaataaaaagaattg < 1:7103780‑M1/35‑30 (MQ=255) gCAGGGggaatttttcgcctgaataaaaagaattg < 1:7307019‑M1/35‑30 (MQ=255) gCAGGGggaatttttcgcatgaataaaaagaattg < 1:5504980‑M1/35‑30 (MQ=255) gCAGGGAAATTTTACCCCAACCAGGATTGCagtag < 1:6022427/35‑1 (MQ=255) gCAGGGAAATTTTACCCCAACCAGGATTGCagtag < 1:2282781/35‑1 (MQ=255) gCAGGGAAATTTTACCCCAACCAGGATTGCagtag > 1:11781047/1‑35 (MQ=255) cAGGGggaatttttcgcctgaataaaaagaattga < 1:4039349‑M1/35‑31 (MQ=255) cAGGGggaatttttcgcctgaataaaaagaattga > 1:7414346‑M1/1‑5 (MQ=255) cAGGGAAATTTTACCCCAACCAGGATTGCagtagt < 1:19776524/35‑1 (MQ=255) cAGGGAAATTTTACCCCAACCAGGATTGCagtagt > 1:10845191/1‑35 (MQ=255) cAGGGAAATTTTACCCCAACCAGGATTGCagtagt > 1:15452215/1‑35 (MQ=255) agtgAAATTTTACCCCAACCAGGATTGCAGTAGtt > 1:13945862/4‑35 (MQ=255) aGGTAAATTTTACCCCAACCAGGATTGCAGTAGtt > 1:14537088/1‑35 (MQ=255) aGGGggaatttttcgcctgaataaaaagaattgac > 1:13332797‑M1/1‑4 (MQ=255) aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt < 1:14064323/35‑1 (MQ=255) aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt > 1:16315999/1‑35 (MQ=255) aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt > 1:17259719/1‑35 (MQ=255) aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt < 1:17697843/35‑1 (MQ=255) aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt > 1:10017244/1‑35 (MQ=255) aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt > 1:2369841/1‑35 (MQ=255) aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt < 1:1127472/35‑1 (MQ=255) gggggaatttttcgcctgaataaaaagaattgact > 1:4895612‑M1/1‑3 (MQ=255) gggggaatttttcgcctgaataaaaagaattgact < 1:10329934‑M1/35‑33 (MQ=255) gggAAATTTTACCCCAACCAGGATTGCAGTAGttt > 1:16858599/1‑35 (MQ=255) gggAAATTTTACCCCAACCAGGATTGCAGTAGttt > 1:12215207/1‑35 (MQ=255) gggAAATTTTACCCCAACCAGGATTGCAGTAGttt > 1:10093921/1‑35 (MQ=255) gggAAATTTTACCCCAACCAGGATTGCAGTAGttt > 1:143038/1‑35 (MQ=255) ggggaatttttcgcctgaataaaaagaattgactg > 1:2150611‑M1/1‑2 (MQ=255) ggggaatttttcgcctgaataaaaagaattgactg > 1:20326928‑M1/1‑2 (MQ=255) ggggaatttttcgcctgaataaaaagaattgactg > 1:11056411‑M1/1‑2 (MQ=255) ggggaatttttcgcctgaataaaaagaattgactg > 1:18021428‑M1/1‑2 (MQ=255) ggAAATTTTACCCCAACCAGGATTGCAGTAGTTTg < 1:6755269/35‑1 (MQ=255) ggAAATTTTACCCCAACCAGGATTGCAGTAGTTTg > 1:13074917/1‑35 (MQ=255) ggAAATTTTACCCCAACCAGGATTGCAGTAGTTTg > 1:13249359/1‑35 (MQ=255) gggaatttttcgcctgaataaaaagaattgactgc < 1:10361565‑M1/35‑35 (MQ=255) gggaatttttcgcctgaataaaaagaattgactgc > 1:19197068‑M1/1‑1 (MQ=255) gAAATTTTACCCCAACCAGGATTGCAGTAGTTTgg > 1:9502103/1‑35 (MQ=255) gAAATTTTACCCCAACCAGGATTGCAGTAGTTTgg > 1:14800024/1‑35 (MQ=255) gAAATTTTACCCCAACCAGGATTGCAGTAGTTTgg < 1:6303444/35‑1 (MQ=255) gAAATTTTACCCCAACCAGGATTGCAGTAGTTTgg < 1:4544178/35‑1 (MQ=255) gAAATTTTACCCCAACCAGGATTGCAGTAGTTTgg < 1:3686301/35‑1 (MQ=255) gAAATTTTACCCAAACCAGGATTGCAGTAGTTTgg < 1:8740730/35‑1 (MQ=255) gAAATTTTACCCAAACCAGGATTGCAGTAGTTTgg < 1:12585715/35‑1 (MQ=255) | CGCCGACTAAAGTATTGGCACCCGATACGGCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGG > REL606/218745‑218813 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |