New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 469267 =124 (1.210)5 (0.060) 3/42 NT 4.9% coding (26/645 nt) adk adenylate kinase
?REL606 2766488 = 87 (0.970)coding (154/480 nt) ispF 2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase

Only 100 of 178 total aligned reads displayed.

TCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGC  >  REL606/2766454‑2766522
                                  |                                  
tCCGGGAACAGCTTGCCGATATCCCCCAGcgccgc                                    <  1:10300148/35‑1 (MQ=255)
tCCGGGAACAGCTTGCCGATATCCCCCAGcgccgc                                    <  1:8564351/35‑1 (MQ=255)
cccGGGAACAGCTTGCCGATATCCCCCAGcgccgc                                    <  1:20541225/34‑1 (MQ=255)
 ccGGGAACAGCTTGCCGATATCCCCCAGcgccgcc                                   >  1:778684/1‑35 (MQ=255)
 ccGGGAACAGCTTGCCGATATCCCCCAGcgccgcc                                   >  1:2856301/1‑35 (MQ=255)
  cGGGAACAGCTTGCCGATATCCCCCAGcgccgccg                                  >  1:16938959/1‑35 (MQ=255)
  cGGGAACAGCTTGCCGATATCCCCCAGcgccgccg                                  >  1:15564538/1‑35 (MQ=255)
  cGGGAACAGCTTGCCGATATCCCCCAGcgccgccg                                  >  1:13858552/1‑35 (MQ=255)
  cGGGAACAGCTTGCCGATATCCCCCAGcgccgccg                                  >  1:4330832/1‑35 (MQ=255)
   gggAACAGCTTGCCGATATCCCCCAGcgccgccgc                                 >  1:3470230/1‑35 (MQ=255)
   gggAACAGCTTGCCGATATCCCCCAGcgccgccgc                                 >  1:10136305/1‑35 (MQ=255)
    ggAACAGCTTGCCGATATCCCCCAGCGCCGCcgcg                                >  1:15037652/1‑35 (MQ=255)
    ggAACAGCTTGCCGATATCCCCCAGCGCCGCcgcg                                >  1:10965252/1‑35 (MQ=255)
     gAACAGCTTGCCGATATCCCCCAGCGCCGCCgcgc                               <  1:15460916/35‑1 (MQ=255)
     gAACAGCTTGCCGATATCCCCCAGCGCCGCCgcgc                               >  1:11857262/1‑35 (MQ=255)
      aaCAGCTTGCCGATATCCCCCAGCGCCGCCGCGcc                              >  1:4092949/1‑35 (MQ=255)
       aCAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCa                             >  1:18814564/1‑35 (MQ=255)
       aCAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCa                             >  1:13838991/1‑35 (MQ=255)
       aCAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCa                             >  1:4429117/1‑35 (MQ=255)
       aCAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCa                             >  1:7365430/1‑35 (MQ=255)
        cAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCaa                            >  1:11500955/1‑35 (MQ=255)
        cAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCaa                            >  1:12913300/1‑35 (MQ=255)
        cAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCaa                            >  1:8581319/1‑35 (MQ=255)
         aGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAg                           >  1:13888525/1‑35 (MQ=255)
          gCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGc                          >  1:1424046/1‑35 (MQ=255)
          gCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGc                          >  1:3283069/1‑35 (MQ=255)
          gCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGc                          >  1:19695047/1‑35 (MQ=255)
           cTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCa                         >  1:10654294/1‑35 (MQ=255)
           cTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCa                         >  1:18537621/1‑35 (MQ=255)
            ttGCCGATATCCCCCAGCGCCGCCGCGCCAAGCaa                        >  1:3705317/1‑35 (MQ=255)
            ttGCCGATATCCCCCAGCGCCGCCGCGCCAAGCaa                        >  1:14789466/1‑35 (MQ=255)
            ttGCCGATATCCCCCAGCGCCGCCGCGCCAAGCaa                        >  1:7674148/1‑35 (MQ=255)
             tGCCGATATCCCCCAGCGCCGCCGCGCCCAGCCAt                       >  1:20282139/1‑35 (MQ=25)
             tGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAAt                       >  1:7328696/1‑35 (MQ=255)
             tGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAAt                       >  1:7471898/1‑35 (MQ=255)
              gCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATg                      >  1:944860/1‑35 (MQ=255)
              gCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATg                      >  1:12123761/1‑35 (MQ=255)
                cGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCa                    >  1:16094906/1‑35 (MQ=255)
                cGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCa                    >  1:13075949/1‑35 (MQ=255)
                cGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCa                    >  1:18778277/1‑35 (MQ=255)
                 gATATCCCCCAGCGCCGCCGCGCCAAGCAATGCAt                   >  1:691730/1‑35 (MQ=255)
                 gATATCCCCCAGCGCCGCCGCGCCAAGCAATGCAt                   >  1:4612421/1‑35 (MQ=255)
                 gATATCCCCCAGCGCCGCCGCGCCAAGCAATGCAt                   >  1:15770725/1‑35 (MQ=255)
                  atatCCCCCAGCGCCGCCGCGCCAAGCAATGCATc                  >  1:10659127/1‑35 (MQ=255)
                   tcccccccAGCGCCGCCGCGCCAAGCAATGCATCg                 <  1:7228087/32‑1 (MQ=255)
                   tatCCCCCAGCGCCGCCGCGCCAAGCAATGCATCg                 >  1:7500800/1‑35 (MQ=255)
                   tatCCCCCAGCGCCGCCGCGCCAAGCAATGCATCg                 >  1:20334900/1‑35 (MQ=255)
                    accccccCGCCCCGCCGCGCCAAGCAATGGATCgg                <  1:6800131/33‑1 (MQ=21)
                    accccccACCGCCGCCGCGCCAAGCAATGCATCgg                <  1:4336727/33‑1 (MQ=37)
                     tCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGt               >  1:4828622/1‑35 (MQ=255)
                     ccccccGGCGCCGCCGCGCCAAGAAATGCATCGGt               <  1:17824023/34‑1 (MQ=25)
                      cccccAGCGCCGCCGCGCCAAGCAATGCATCGGTc              >  1:4827115/1‑35 (MQ=255)
                      cccccACCCCCGCCGCGCCAAGCAATGCATCGGTc              <  1:4159105/35‑1 (MQ=37)
                      cccccACCCCCGCCGCGCCAAGCAATGCATCGGTc              <  1:14432931/35‑1 (MQ=37)
                       ccccgcggccgCCGCGCCAAGCAATGCATCGGTCa             <  1:19522007‑M2/24‑1 (MQ=255)
                       ccccAGCGCCGCCGCGCCAAGCAATGCATCGGTCa             >  1:3894453/1‑35 (MQ=255)
                       ccccAGCCCCGCCGCGCCAAGCAATGCATCGGTCa             <  1:3663413/35‑1 (MQ=255)
                       ccccAGCCCCGCCGCGCCAAGCAATGCATCGGTCa             <  1:16631498/35‑1 (MQ=255)
                       ccccACCCCCGCCGCGCCAAGCAATGCATCGGTCa             <  1:6299176/35‑1 (MQ=37)
                        cccgcccccgCCGCGCCAAGCAATGCATCGGTCaa            <  1:18273417‑M2/25‑1 (MQ=255)
                        cccacgcccgCCGCGCCAAGCAATGCATCGGTCaa            <  1:5838443‑M2/25‑1 (MQ=255)
                        cccGGCGCCGCCGCGCCAAGCAATGCATCGGTCaa            <  1:6491002/35‑1 (MQ=255)
                        cccAGCGCCGCCGCGCCAAGCAATGCATCGGTCaa            <  1:12187806/35‑1 (MQ=255)
                         ccAGCGCCGCCGCGCCAAGCAATGCATCGGTCAAc           >  1:15300958/1‑35 (MQ=255)
                         ccAGCGCCGCCGCGCCAAGCAATGCATCGGTCAAc           <  1:19151974/35‑1 (MQ=255)
                         ccAGCCCCGCCGCGCCAAGCAATGCATCGGTCAAc           <  1:18121520/35‑1 (MQ=255)
                         ccAGCCCCGCCGCGCCAAGCAATGCATCGGTCAAc           <  1:6153335/35‑1 (MQ=255)
                          cgcccccgCCGCGCCAAGCAATGCATCGGTCAACg          <  1:2906925‑M2/27‑1 (MQ=255)
                          ccgcgcCGCCGCGCCAAGCAATGCATCGGTCAACg          <  1:20296129/33‑1 (MQ=255)
                          cAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACg          >  1:15151821/1‑35 (MQ=255)
                          cAGCCCCGCCGCGCCAAGCAATGCATCGGTCAACg          <  1:7159558/35‑1 (MQ=255)
                           ccccccgCCGCGCCAAGCAATGCATCGGTCAACGc         <  1:12606907‑M2/28‑1 (MQ=255)
                           aGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGc         <  1:2153595/35‑1 (MQ=255)
                            cccccgCCGCGCCAAGCAATGCATCGGTCAACGCa        <  1:12646957‑M2/29‑1 (MQ=255)
                            cccccgCCGCGCCAAGCAATGCATCGGTCAACGCa        <  1:17789710‑M2/29‑1 (MQ=255)
                             cgccgccgcGCCAAGCAATGCATCGGTCAACGCAt       >  1:10179521/1‑35 (MQ=255)
                             cgccgccgcGCCAAGCAATGCATCGGTCAACGCAt       >  1:5702398/1‑35 (MQ=255)
                             cgccgccgcGCCAAGCAATGCATCGGTCAACGCAt       >  1:12716613/1‑35 (MQ=255)
                             ccccgCCGCGCCAAGCAATGCATCGGTCAACGCAt       <  1:15994825‑M2/30‑1 (MQ=255)
                             ccccgCCGCGCCAAGCAATGCATCGGTCAACGCAt       <  1:2218111‑M2/30‑1 (MQ=255)
                              gccgccgcGCCAAGCAATGCATCGGTCAACGCATg      >  1:4903226/1‑35 (MQ=255)
                              gccgccgcGCCAAGCAATGCATCGGTCAACGCATg      >  1:10404687/1‑35 (MQ=255)
                              gccgccgcGCCAAGCAATGCATCGGTCAACGCATg      >  1:14626169/1‑35 (MQ=255)
                              gccgccgcGCCAAGCAATGCATCGGTCAACGCATg      >  1:19596229/1‑35 (MQ=255)
                              cccgCCGCGCCAAGCAATGCATCGGTCAACGCATg      <  1:8821775‑M2/31‑1 (MQ=255)
                              cccgCCGCGCCAAGCAATGCATCGGTCAACGCATg      <  1:19941021‑M2/31‑1 (MQ=255)
                              cccgCCGCGCCAAGCAATGCATCGGTCAACGCATg      <  1:7111002‑M2/31‑1 (MQ=255)
                               ccgCCGCGCCAAGCAATGCATCGGTCAATGCATgg     <  1:17383741‑M2/32‑1 (MQ=255)
                               ccgCCGCGCCAAGCAATGCATCGGTCAACGCATgg     <  1:15857273‑M2/32‑1 (MQ=255)
                               ccgCCGCGCCAAGCAATGCATCGGTCAACGCATgg     <  1:8159953‑M2/32‑1 (MQ=255)
                                cgCCGCGCCAAGCAATGCATCGGTCAACGCATGGa    >  1:5206887‑M2/3‑35 (MQ=255)
                                cgCCGCGCCAAGCAATGCATCGGTCAACGCATGGa    <  1:9607184‑M2/33‑1 (MQ=255)
                                 gCCGCGCCAAGCAATGCATCGGTCAACGCATGGAg   >  1:19985029‑M2/2‑35 (MQ=255)
                                 gCCGCGCCAAGCAATGCATCGGTCAACGCATGGAg   <  1:19845236‑M2/34‑1 (MQ=255)
                                 gCCGCGCCAAGCAATGCATCGGTCAACGCATGGAg   >  1:7652317‑M2/2‑35 (MQ=255)
                                 gCCGCGCCAAGCAATGCATCGGTCAACGCATGGAg   >  1:1375961‑M2/2‑35 (MQ=255)
                                  ccgcGCCAAGCAATGCATCGGTCAACGCATGGAgc  <  1:2131549/35‑1 (MQ=255)
                                  ccgcGCCAAGCAATGCATCGGTCAAAGCATGGAgc  <  1:2626450/35‑1 (MQ=255)
                                  ccgcGCCAAGCAATGCATCAGTCAACGCATGGAgc  <  1:7628093/35‑1 (MQ=255)
                                  ccgcGCCAAGCAATGCATAGGTCAACGCATGGAgc  <  1:3199833/35‑1 (MQ=255)
                                  |                                  
TCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGC  >  REL606/2766454‑2766522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.