New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 207313 =39 (0.380)6 (0.060) 3/44 NT 6.9% coding (1124/1149 nt) lpxB lipid‑A‑disaccharide synthase
?REL606 1513006 = 126 (1.340)coding (3736/3741 nt) narZ nitrate reductase 2 (NRZ), alpha subunit

Only 100 of 112 total aligned reads displayed.

CAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGAGTTAGCACAATGATCGAATTTG  >  REL606/207279‑207347
                                  |                                  
gatgaaggtcgcgatcaggtacaggaggcgaaaaa                                    <  1:2049945‑M1/1‑1 (MQ=255)
gatgaaggtcgcgatcaggtacaggaggcgaaaaa                                    <  1:722411‑M1/1‑1 (MQ=255)
gatgaaggtcgcgatcaggtacaggaggcgaaaaa                                    <  1:12949656‑M1/1‑1 (MQ=255)
gatgaaggtcgcgatcaggtacaggaggcgaaaaa                                    <  1:19503175‑M1/1‑1 (MQ=255)
cagATCCGCTGCAATGCCGATGAGCAGGCGGgaca                                    >  1:6373283/1‑35 (MQ=255)
cagATCCGCTGCAATGCCGATGAGCAGGCGGcaca                                    <  1:13470203/35‑1 (MQ=255)
cagATCCGCTGCAATGCCGATGAGCAGGCGGcaca                                    >  1:794695/1‑35 (MQ=255)
cagATCCGCTGCAATGCCGATGAGCAGGCGGcaca                                    >  1:8854558/1‑35 (MQ=255)
cagATCAGCTGCAATGCCGATGAGCAGGCGGcaca                                    <  1:10960887/35‑1 (MQ=255)
 atgaaggtcgcgatcaggtacaggaggcgaaaaaa                                   <  1:10212491‑M1/2‑1 (MQ=255)
 atgaaggtcgcgatcaggtacaggaggcgaaaaaa                                   >  1:14460962‑M1/34‑35 (MQ=255)
 atgaaggtcgcgatcaggtacaggaggcgaaaaaa                                   >  1:17136810‑M1/34‑35 (MQ=255)
 agATCCGCTGCAATGCCGATGAGCAGGCGGCACaa                                   <  1:1309814/35‑1 (MQ=255)
 agATCCGCTGCAATGCCGATGAGCAGGCGGCACaa                                   >  1:17747614/1‑35 (MQ=255)
 agATCCGCTGCAATGCCGATGAGCAGGCGGCACaa                                   <  1:1939169/35‑1 (MQ=255)
  gATCCGCTGCAATGCCGATGAGCAGGCGGCACAAg                                  >  1:7402859/1‑35 (MQ=255)
   acccGCTGCAATGCCGATGAGCAGGCGGCACAAGc                                 <  1:403723/33‑1 (MQ=255)
   aTCCGCTGCAATGCCGATGAGCGGGCGGCACAAGc                                 <  1:8838449/35‑1 (MQ=255)
   aTCCGCTGCAATGCCGATGAGCAGGCGGGCCAAgg                                 >  1:20008073/1‑34 (MQ=25)
   aTCCGCTGCAATGCCGATGAGCAGGCGGGACaaac                                 >  1:11408065/1‑33 (MQ=37)
   aTCCGCTGCAATGCCGATGAGCAGGCGGGACAAGc                                 >  1:5557859/1‑35 (MQ=255)
   aTCCGCTGCAATGCCGATGAGCAGGCGGCACAAGc                                 <  1:19793043/35‑1 (MQ=255)
   aTCCGCTGCAATGCCGATGAGCAGGCGGCACAAGc                                 <  1:1661941/35‑1 (MQ=255)
   aTCCGCTGCAATGCCGATGAGCAGGCGGCACAAGc                                 <  1:826734/35‑1 (MQ=255)
   aTCCGCTGCAATGCCGATGAGCAGGCGGCACAAGc                                 <  1:6618640/35‑1 (MQ=255)
   aTCCGCTGCAAGGCCGATGAGCAGGCGGCACAAGc                                 <  1:767533/35‑1 (MQ=255)
    tCCGCTGCAATGCCTATGAGCAGGCGGGACAAgac                                >  1:18568104/1‑33 (MQ=37)
    tCCGCTGCAATGCCGATGAGCAGGCGGCACAAGcc                                >  1:7713470/1‑35 (MQ=255)
    tCCGCTGCAATGCCGATGAGCAGGCGGCACAAGcc                                <  1:8962488/35‑1 (MQ=255)
    cccGCTGCAATGCCGATGAGCAGGCGGCACAAGcc                                <  1:8250425/34‑1 (MQ=255)
    cccGCTGCAATGCCGATGAGCAGGCGGCACAAGcc                                <  1:7750394/34‑1 (MQ=255)
     ccGCTGCAATGCCGATGAGCAGGCGGCACAAACCg                               >  1:4482513/1‑35 (MQ=255)
      cGCTGCAATGCCGATGAGCAGGCGGCACAAGCCgg                              >  1:4439324/1‑34 (MQ=255)
      cGCTGCAATGCCGATGAGCAGGCGGCACAAGCCgg                              >  1:15762220/1‑34 (MQ=255)
       gCTGCAATGCCGATGAGCAGGCGGCACAAGCCggt                             >  1:4977350/1‑33 (MQ=255)
       gCTGCAATGCCGATGAGCAGGCGGCACAAGCCGtt                             >  1:13632954/1‑35 (MQ=255)
       gCTGCAATGCCGATGAGCAGGCGGCACAAGCCGtt                             >  1:8061549/1‑35 (MQ=255)
        cTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTc                            >  1:18780951/1‑35 (MQ=255)
         tGCAATGCCGATGAGCAGGCGGCACAAGCCGGTCt                           >  1:19974532/1‑35 (MQ=255)
          gCAATGCCGATGAGCAGGCGGCACAAGCCGTGCTg                          >  1:4039659/1‑35 (MQ=255)
            aaTGCCGATGAGCAGGCGGCACAAGCCGTTCTggg                        >  1:20322757/1‑34 (MQ=255)
            aaTGCCGATGAGCAGGCGGCACAAGCCGTTCTGGa                        >  1:223619/1‑35 (MQ=255)
            aaTGCCGATGAGCAGGCGGCACAAGCCGGTCTGGa                        >  1:6383938/1‑35 (MQ=255)
               gCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGtt                     >  1:10703134/1‑35 (MQ=255)
                ccGATGAGCAGGCGTCACAAGCCGTTCTGGAGTTa                    >  1:20139484/1‑35 (MQ=255)
                ccGATGAGCAGGCGGCACAAGCCGTTTTTGAGTTa                    >  1:19126499/1‑35 (MQ=37)
                ccGATGAGCAGGCGGCACAAGCCGGTCTGGGGTTa                    >  1:1828792/1‑35 (MQ=37)
                 cGATGAGCATGCGGCACAAGCCGTTCTGGAGTTAg                   >  1:6120631/1‑35 (MQ=255)
                 cGATGAGCAGGCGGCACAAGCCGGTCTGGAGTTAg                   >  1:12676011/1‑35 (MQ=255)
                  gATGAGCAGGCGGCACAAGCCGTTCTGGAGTTAGc                  >  1:19260240/1‑35 (MQ=255)
                   aTGAGCAGGCGGCACAAGCCGTTCTGGAGTTAGca                 >  1:19889963/1‑35 (MQ=255)
                    ggAGCGGGCGGCAAAAGCCGTTCTGGAGTTAGcac                <  1:3538330/34‑1 (MQ=25)
                     gAGCGGGCGACAAAAGCCGTTCTGGAGTTAGcaca               <  1:7948125/35‑1 (MQ=25)
                     gAGCAGGCGGCACAAGCCGGTCTGGGGTTAGcaca               >  1:1831920/1‑35 (MQ=37)
                      agggggcgaaaaAAGCCGTTCTGGAGTTAGCACaa              >  1:8057240‑M1/13‑35 (MQ=255)
                      aggaggcgaaaaAAGCCGTTCTGGAGTTAGCACaa              >  1:4884831‑M1/13‑35 (MQ=255)
                      aGCAGGCGGCACAAGCCGTTCTGGAGTTAGCACaa              >  1:1360464/1‑35 (MQ=255)
                      aGCAGGCGGCACAAGCCGTTCTGGAGTTAGCACaa              >  1:3659727/1‑35 (MQ=255)
                      aGCAGGCGGAAAAAGCCGTTCTGGAGTTAGCACaa              <  1:17998956/35‑1 (MQ=37)
                       ggaggcgaaaaAAGCCGTTCTGGAGTTAGCACAAt             >  1:8913412‑M1/12‑35 (MQ=255)
                       gcgggcgacAAAAGCCGTTCTGGAGTTAGCACAAt             <  1:3689342/32‑1 (MQ=25)
                        cgggcgaaaaAAGCCGTTCTGGAGTTAGCACAATg            >  1:18857585‑M1/11‑35 (MQ=255)
                        cAGGCGGCACAAGCCGTTCTGGAGTTAGCACAATg            >  1:5826021/1‑35 (MQ=255)
                         aggcggaaaAAGCCGTTCTGGAGTTAGCACAATGa           >  1:8103527‑M1/10‑35 (MQ=255)
                         aGGCTGCACAAGCCGTTCTGGAGTTAGCACAATGa           >  1:15513495/1‑35 (MQ=255)
                         aGGCGGCACAAGCCGTTCTGGAGTTAGCACAATGa           >  1:10652079/1‑35 (MQ=255)
                         aGGCGGCACAAGCCGTTCTGGAGTTAGCACAATGa           >  1:18103023/1‑35 (MQ=255)
                         aGGCGGCACAAGCCGTTCTGGAGTTAGCACAATGa           >  1:11253711/1‑35 (MQ=255)
                           gcggcAAAAGCCGTTCTGGAGTTAGCACAATGATc         <  1:12018831/35‑1 (MQ=255)
                            cggcACAAGCCGTTCTGGAGTTAGCACAATGATCg        >  1:1236951/1‑35 (MQ=255)
                            cggcAAAAGCCGTTCTGGAGTTAGCACAATGATCg        <  1:11406713/35‑1 (MQ=255)
                             ggcaaAAGCCGTTCTGGAGTTAGCACAATGATCGa       >  1:11993897‑M1/6‑35 (MQ=255)
                             gcaaaAAGCCGTTCTGGAGTTAGCACAATGATCGa       >  1:5096569‑M1/6‑35 (MQ=255)
                             gacaaAAGCCGTTCTGGAGTTAGCACAATGATCGa       >  1:10467552‑M1/6‑35 (MQ=255)
                             gaaaaAAGCCGTTCTGGAGTTAGCACAATGATCGa       >  1:6461776‑M1/6‑35 (MQ=255)
                             agaaaAAGCCGTTCTGGAGTTAGCACAATGATCGa       >  1:14492731‑M1/6‑35 (MQ=255)
                             aacaaAAGCCGTTCTGGAGTTAGCACAATGATCGa       >  1:8901435‑M1/6‑35 (MQ=255)
                              gaaaAAGCCGTTCTGGAGTTAGCACAATGATCGaa      >  1:20510204‑M1/5‑35 (MQ=255)
                               cacaAGCCGTTCTGGAGTTAGCACAATGATCGAAt     >  1:15405639/1‑35 (MQ=255)
                               caaAAGCCGTTCTGGAGTTAGCACAATGATCGAAt     >  1:9332335‑M1/4‑35 (MQ=255)
                               caaAAGCCGTTCTGGAGTTAGCACAATGATCGAAt     >  1:5892523‑M1/4‑35 (MQ=255)
                               caaAAGCCGTTCTGGAGTTAGCACAATGATCGAAt     >  1:17642388‑M1/4‑35 (MQ=255)
                                acaAGCCGTTCTGGAGTTAGCACAATGATCGAAtt    >  1:15820618/1‑35 (MQ=255)
                                aaAAGCCGTTCTGGAGTTAGCACAATGATCGAAtt    >  1:11131682‑M1/3‑35 (MQ=255)
                                aaAAGCCGTTCTGGAGTTAGCACAATGATCGAAtt    >  1:19705773‑M1/3‑35 (MQ=255)
                                 caAGCCGTTCTGGAGTTAGCATAATGATCGAAttt   >  1:11309712/1‑35 (MQ=255)
                                 caAGCCGTTCTGGAGTTAGCACAATGATCGAAttt   >  1:116105/1‑35 (MQ=255)
                                 aAAGCCGTTCTGGAGTTAGCACAATGATCGAAttt   >  1:5495060‑M1/2‑35 (MQ=255)
                                 aAAGCCGTTCTGGAGTTAGCACAATGATCGAAttt   >  1:9035626‑M1/2‑35 (MQ=255)
                                 aAAGCCGTTCTGGAGTTAGCACAATGATCGAAttt   >  1:13525798‑M1/2‑35 (MQ=255)
                                  AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg  <  1:10000716‑M1/35‑1 (MQ=255)
                                  AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg  >  1:10408308‑M1/1‑35 (MQ=255)
                                  AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg  <  1:12775780‑M1/35‑1 (MQ=255)
                                  AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg  <  1:13699857‑M1/35‑1 (MQ=255)
                                  AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg  >  1:19489853‑M1/1‑35 (MQ=255)
                                  AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg  >  1:7976743‑M1/1‑35 (MQ=255)
                                  AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg  <  1:20066925‑M1/35‑1 (MQ=255)
                                  AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg  >  1:2736980‑M1/1‑35 (MQ=255)
                                  AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg  >  1:3282551‑M1/1‑35 (MQ=255)
                                  AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg  >  1:6331394‑M1/1‑35 (MQ=255)
                                  |                                  
CAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGAGTTAGCACAATGATCGAATTTG  >  REL606/207279‑207347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.