New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2979870135 (1.310)6 (0.060) 3/44 NT 6.2% coding (962/981 nt) yggR predicted transporter
?REL606 4245169 = 59 (0.630)coding (456/1080 nt) alr alanine racemase

Only 100 of 118 total aligned reads displayed.

ATCATCGCCTGACCCAGTGCAAAAACGTTCGTCAGCCGGTGAATATCGTCAGCCATTTTGCGCGCGCGG  >  REL606/4245135‑4245203
                                  |                                  
atcatcGCCTGACCCAGTGCAAAAACGTTCGTCAg                                    >  1:7817170/1‑35 (MQ=255)
atcatcGCCTGACCCAGTGCAAAAACGTTCGTCAg                                    <  1:5815156/35‑1 (MQ=255)
atcatcGCCTGACCCAGTGCAAAAACGTTCGTCAg                                    >  1:2319583/1‑35 (MQ=255)
atcatcGCCTGACCCAGTGCAAAAACGTTCGTCAg                                    >  1:18446094/1‑35 (MQ=255)
 tcatcGCCTGACCCAGTGCAAAAACGTTCGTCAGc                                   <  1:9007288/35‑1 (MQ=255)
 tcatcGCCTGACCCAGTGCAAAAACGTTCGTCAGc                                   >  1:7297098/1‑35 (MQ=255)
 tcatcGCCTGACCCAGTGCAAAAACGTTCGTCAGc                                   >  1:4977989/1‑35 (MQ=255)
  catcGCCTGACCCAGTGCAAAAACGTTCGTCAGcc                                  >  1:8473941/1‑35 (MQ=255)
   atcGCCTGACCCAGTGCAAAAACGTTCGTCAGCCg                                 >  1:10565490/1‑35 (MQ=255)
   atcGCCTGACCCAGTGCAAAAACGTTCGTCAGCCg                                 >  1:392028/1‑35 (MQ=255)
   atcGCCTGACCCAGTGCAAAAACGTTCGTCAGCCg                                 >  1:16422501/1‑35 (MQ=255)
    tcGCCTGACCCAGTGCAAAAACGTTCGTCAGCCgg                                >  1:17612618/1‑35 (MQ=255)
    tcGCCTGACCCAGTGCAAAAACGTTCGTCAGCCgg                                >  1:12945011/1‑35 (MQ=255)
     cGCCTGACCCAGTGCAAAAACGTTCGTCAGCCGGt                               >  1:3223573/1‑35 (MQ=255)
      gCCTGACCCAGTGCAAAAACGTTCGTCAGCCGGTg                              >  1:9861031/1‑35 (MQ=255)
      gCCTGACCCAGTGCAAAAACGTTCGTCAGCCGGTg                              >  1:11701432/1‑35 (MQ=255)
       ccTGACCCAGTGCAAAAACGTTCGTCAGCCGGTgc                             >  1:10459067/1‑34 (MQ=255)
       ccTGACCCAGTGCAAAAACGTTCGTCAGCCGGTGa                             >  1:18769476/1‑35 (MQ=255)
        cTGACCCAGTGCAAAAACGTTCGTCAGCCGGTGaa                            >  1:8317190/1‑35 (MQ=255)
        cTGACCCAGTGCAAAAACGTTCGTCAGCCGGTGaa                            >  1:13731626/1‑35 (MQ=255)
         tGACCCAGTGCAAAAACGTTCGTCAGCCGGTGAat                           >  1:5729667/1‑35 (MQ=255)
         tGACCCAGTGCAAAAACGTTCGTCAGCCGGTGAat                           >  1:18466043/1‑35 (MQ=255)
         tGACCCAGTGCAAAAACGTTCGTCAGCCGGTGAat                           >  1:17788059/1‑35 (MQ=255)
         tGACCCAGTGCAAAAACGTTCGTCAGCCGGCGAat                           >  1:19369106/1‑35 (MQ=255)
          gACCCAGTGCAAAAACGTTCGTCAGCCGTTGAata                          >  1:19152947/1‑35 (MQ=255)
          gACCCAGTGCAAAAACGTTCGTCAGCCGGTGaaca                          >  1:19174272/1‑33 (MQ=255)
          gACCCAGTGCAAAAACGTTCGTCAGCCGGTGAata                          >  1:11744021/1‑35 (MQ=255)
          gACCCAGTGCAAAAACGTTCGTCAGCCGGTGAata                          >  1:2981401/1‑35 (MQ=255)
          gACCCAGTGCAAAAACGTTCGTCAGCCGGTGAata                          >  1:2631284/1‑35 (MQ=255)
          gACCCAGTGCAAAAACGTTCGTCAGCCGGTGAata                          >  1:20548144/1‑35 (MQ=255)
          gACCCAGTGCAAAAACGTTCGTCAGCCGGTGAata                          >  1:16730550/1‑35 (MQ=255)
           aCCCAGTGCAAAAACGTTCGTCAGCCGGTGAatat                         >  1:1098766/1‑35 (MQ=255)
             ccAGTGCAAAAACGTTCGTCAGCCGGTGAATATCg                       >  1:12513214/1‑35 (MQ=255)
             ccAGTGCAAAAACGTTCGTCAGCCGGTGAATATCg                       >  1:10724050/1‑35 (MQ=255)
             ccAGCGCAAAAACGTTCGTCAGCCGGTGAATATCg                       >  1:14503091/1‑35 (MQ=255)
              cAGTGCAAAAACGTTCGTCAGCCGGTGAATATCGt                      >  1:13825283/1‑35 (MQ=255)
               aatGCAAAAACGTTCGTCAGCCGGTGAATATCGTc                     >  1:4896839/3‑35 (MQ=255)
               aGTGCAAAAACGTTCGTCAGCCGGTGAATATCGTc                     >  1:17989753/1‑35 (MQ=255)
                gTGCAAAAACGTTCGTCAGCCGGTGAATATCGTCa                    >  1:19076073/1‑35 (MQ=255)
                gTGCAAAAACGTTCGTCAGCCGGTGAATATCGTCa                    >  1:9641220/1‑35 (MQ=255)
                 tGCAAAAACGTTCGTCAGCCGGTGAATATCGTCAg                   >  1:9106638/1‑35 (MQ=255)
                   cAAAAACGTTCGTCAGCCGGTGAATATCGTCAGcc                 >  1:6128688/1‑35 (MQ=255)
                   cAAAAACGTTCGTCAGCCGGTGAATATCGTCAGcc                 >  1:12919047/1‑35 (MQ=255)
                   cAAAAACGTTCGTCAGCCGGTGAATATCGTCAGcc                 >  1:5469617/1‑35 (MQ=255)
                    aaaaaCGTTCGTCAGCCGGTGAATATCGTCAGccc                >  1:2105581/1‑34 (MQ=255)
                    aaaaaCGTTCGTCAGCCGGTGAATATCGTCAGCCa                >  1:2839110/1‑35 (MQ=255)
                    aaaaaCGTTCGTCAGCCGGTGAATATCGTCAGCCa                >  1:15382041/1‑35 (MQ=255)
                     aaaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAt               >  1:13613070/1‑35 (MQ=255)
                     aaaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAt               >  1:1860750/1‑35 (MQ=255)
                     aaaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAt               >  1:11908224/1‑35 (MQ=255)
                     aaaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAt               >  1:5377854/1‑35 (MQ=255)
                      aaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAtt              >  1:1958872/1‑35 (MQ=255)
                      aaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAtt              >  1:7817105/1‑35 (MQ=255)
                      aaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAtt              >  1:10951815/1‑35 (MQ=255)
                       cccttcccccaGCCGGTGAATATCGTCAGCCAttt             <  1:5592449‑M2/24‑1 (MQ=255)
                       cccttcccccaGCCGGTGAATATCGTCAGCCAttt             <  1:16767006‑M2/24‑1 (MQ=255)
                       cccgtcccccaGCCGGTGAATATCGTCAGCCAttt             <  1:6353918‑M2/24‑1 (MQ=255)
                       aaCGTTCGTCAGCCGGTGAATATCGTCAGCCCttt             >  1:9253416/1‑35 (MQ=255)
                       aaCGTTCGTCAGCCGGTGAATATCGTCAGCCAttt             >  1:4188567/1‑35 (MQ=255)
                       aaCGTTCGTCAGCCGGTGAATATCGTCAGCCAttt             >  1:4989860/1‑35 (MQ=255)
                       aaCGTTCGTCAGCCGGTGAATATCGTCAGCCAttt             >  1:2125732/1‑35 (MQ=255)
                        ccttcccccaGCCGGTGAATATCGTCAGCAAtttt            <  1:234016‑M2/25‑1 (MQ=255)
                         cGTTCGTCAGCCGGTGAATATCGTCAGCCATTTTg           >  1:3798186/1‑35 (MQ=255)
                          ttcccccaGCCGGTGAATATAGTCAGCCATTTTgc          <  1:11771260‑M2/27‑1 (MQ=255)
                          tccccccaGCCGGTGAATATCGTCAGCCATTTTgc          <  1:12286861‑M2/27‑1 (MQ=255)
                          gTTCGTCAGCCGGTGAATATCGTCAGCCAtttttc          >  1:7509427/1‑33 (MQ=255)
                          gTTCGTCAGCCGGTGAATATCGTCAGCCATTTTgc          >  1:6176504/1‑35 (MQ=255)
                          gTTCGTCAGCCGGTGAATATCGTCAGCCATTTTgc          >  1:15820958/1‑35 (MQ=255)
                           ttCGTCAGCCGGTGAATATCGTCAGCCATTTTtcg         >  1:7055061/1‑35 (MQ=255)
                           ttCGTCAGCCGGTGAATATCGTCAGCCATTTTtcg         >  1:16006516/1‑35 (MQ=255)
                           ttCGTCAGCCGGTGAATATCGTCAGCCATTTTtcg         >  1:16224887/1‑35 (MQ=255)
                           ttCGTCAGCCGGTGAATATCGTCAGCCATTTTgcg         >  1:13450348/1‑35 (MQ=255)
                            cccccaGCCGGTGAATATCGTCAGCCATTTTgcgc        <  1:16538202‑M2/29‑1 (MQ=255)
                            cccccaGCCGGTGAATATCGTCAGCCATTTTgcgc        <  1:7991776‑M2/29‑1 (MQ=255)
                            cccccaGCCGGTGAATATCGTCAGCCATTTTgcgc        <  1:5913218‑M2/29‑1 (MQ=255)
                             ccccaGCCGGTGAATATCGTCAGCCATTTTgcgcg       <  1:11849682‑M2/30‑1 (MQ=255)
                             cGTCAGCCGGTGAATATCGTCAGCCATTTTtcgcg       >  1:13536327/1‑35 (MQ=255)
                             cGTCAGCCGGTGAATATCGTCAGCCATTTTtcgcg       >  1:6412236/1‑35 (MQ=255)
                              gTCAGCCGGTGAATATCGTCAGCCATTTTtcccgc      >  1:7233353/1‑35 (MQ=25)
                              gTCAGCCGGTGAATATCGTCAGCCATTTTgcgcgc      >  1:610943/1‑35 (MQ=255)
                              gTCAGCCGGTGAATATCGTCAGCCATTTTgcgcgc      >  1:7290062/1‑35 (MQ=255)
                              cccaGCCGGTGAATATCGTCAGCCATTTTgcgcgc      <  1:13049195‑M2/31‑1 (MQ=255)
                              cccaGCCGGTGAATATCGTCAGCCATTTTgcgcgc      <  1:10529672‑M2/31‑1 (MQ=255)
                              cccaGCCGGTGAATATCGTCAGCCATTTTgcgcgc      <  1:15680501‑M2/31‑1 (MQ=255)
                               tCAGCCGGTGAATATCGTCAGCCATTTTtcgcgcg     >  1:7383501/1‑35 (MQ=255)
                               tCAGCCGGTGAATATCGTCAGCCATTTTtcgcgcg     >  1:14835581/1‑35 (MQ=255)
                               tCAGCCGGTGAATATCGTCAGCCATTTTgcgcgcg     >  1:13214834/1‑35 (MQ=255)
                               tCAGCCGGTGAATATCGTCAGCCATTTTgcgcgcc     >  1:689824/1‑34 (MQ=255)
                                cggCCGGTGAATATCGCCAGCCATTTTgcgcgcgc    <  1:7272561/33‑1 (MQ=37)
                                caGCCGGTGAATATCGTCAGCCATTTTtcgcgcgc    >  1:2128167‑M2/3‑35 (MQ=255)
                                caGCCGGTGAATATCGCCAGCCATTTTgcgcgcgc    >  1:11367485‑M2/3‑35 (MQ=255)
                                 aGCCTGTGAATATCGTCAGCCATTTTGcgcgcgcg   <  1:20203347‑M2/34‑1 (MQ=255)
                                 aGCCGGTGAATATCGTCAGCCATTTTTcgcgcgcg   >  1:19913371‑M2/2‑35 (MQ=255)
                                 aGCCGGTGAATATCGTCAGCCATTTTGcgcgcgcg   >  1:14208843‑M2/2‑35 (MQ=255)
                                 aGCCGGTGAATATCGTCAGCCATTTTGcgcgcgcg   >  1:6840634‑M2/2‑35 (MQ=255)
                                  gCCGGTGAATATCGTCAGCCATTTTTCGCGCGCgg  >  1:14711122/1‑35 (MQ=255)
                                  gCCGGTGAATATCGTCAGCCATTTTGCGCGCGCgg  <  1:18353329/35‑1 (MQ=255)
                                  gCCGGTGAATATCGTCAGCCATTTTGCGCGCGCgg  >  1:13282121/1‑35 (MQ=255)
                                  gCCGGTGAATATCGTCAGCCATTTTGCGCGCGCgg  <  1:4105910/35‑1 (MQ=255)
                                  gCCGGTGAATATCGTCAGCCATTTTGCGCGCGCgg  <  1:4284625/35‑1 (MQ=255)
                                  |                                  
ATCATCGCCTGACCCAGTGCAAAAACGTTCGTCAGCCGGTGAATATCGTCAGCCATTTTGCGCGCGCGG  >  REL606/4245135‑4245203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.