New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1493185140 (1.360)10 (0.120) 4/38 NT 10.9% intergenic (‑10/‑232) yncD/yncE predicted iron outer membrane transporter/hypothetical protein
?REL606 3269358 = 53 (0.650)coding (415/972 nt) ispB octaprenyl diphosphate synthase

Only 100 of 137 total aligned reads displayed.

TTCACTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACT  >  REL606/3269324‑3269392
                                  |                                  
ttCACTCAAAGTGCTGGAAGTCATGTCAGAAGCCg                                    >  1:821512/1‑35 (MQ=255)
ttCACTCAAAGTGCTGGAAGTCATGTCAGAAGCCg                                    <  1:11989622/35‑1 (MQ=255)
ttCACTCAAAGTGCTGGAAGTCATGTCAGAAGCCg                                    <  1:2849170/35‑1 (MQ=255)
  cACTCAAAGTGCTGGAAGGCATGTCAGAAGCCgga                                  >  1:1828927/1‑33 (MQ=37)
   aCTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTaa                                 >  1:11804800/1‑35 (MQ=255)
    cTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTaaa                                >  1:9483759/1‑35 (MQ=255)
    cTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTaaa                                >  1:19144147/1‑35 (MQ=255)
    cTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTaaa                                >  1:713823/1‑35 (MQ=255)
     tCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAAc                               >  1:7221821/1‑35 (MQ=255)
     tCAAAGTGCTGGAAGGCATGTCAGAAGCCGGAAAc                               >  1:8398441/1‑35 (MQ=25)
      cAAAGTGCTTGAAGTCATGTCAGAAGCCGTAAACg                              >  1:12658975/1‑35 (MQ=255)
      cAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACg                              >  1:9366430/1‑35 (MQ=255)
      cAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACg                              >  1:10143401/1‑35 (MQ=255)
       aaaGTGCTGGAAGTCATGTCAGAAGCCGTAAACgc                             >  1:2861447/1‑34 (MQ=255)
        aaGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTc                            >  1:6800023/1‑35 (MQ=255)
         aGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCa                           >  1:9900426/1‑35 (MQ=255)
         aGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCa                           >  1:17018567/1‑35 (MQ=255)
         aGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCa                           >  1:11305438/1‑35 (MQ=255)
          gTGCTGGAATTCATGTAAAAAGCCGTAAACGTCAt                          <  1:11692685/35‑1 (MQ=25)
           tGCTGGAAGTCATGTCAGAAGCCGTAAACGCCacc                         >  1:4737010/1‑33 (MQ=37)
            gCTTGAAGTCATGTCAGAAGCCGTAAACGTCATCg                        >  1:1905081/1‑35 (MQ=255)
            gCTTGAAGTCATGTCAGAAGCCGTAAACGTCATCg                        >  1:13131996/1‑35 (MQ=255)
             cTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGc                       >  1:20085027/1‑35 (MQ=255)
             cTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGc                       >  1:8643949/1‑35 (MQ=255)
             cTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGc                       >  1:4117835/1‑35 (MQ=255)
             cTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGc                       >  1:16976832/1‑35 (MQ=255)
               ggAAGTCATGTCAGAAGCCGTAAACGTCATCGCAg                     >  1:17240909/1‑35 (MQ=255)
                gAAGTGATGCAAAAAGCCGTAAACGTCATCGCAGa                    <  1:1585567/35‑1 (MQ=19)
                gAAGTCATGTCAGAAGCCGTAACCGTCATCGCAGa                    >  1:8490183/1‑35 (MQ=255)
                gAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGa                    >  1:2129405/1‑35 (MQ=255)
                aaggTCATGTAAAAAGCCGTAAACGTCATCGCAGa                    <  1:19291189/32‑1 (MQ=25)
                 atttCAGGTAAGAAGCCGTAAACGTCATCGCAGaa                   <  1:5221351/32‑1 (MQ=25)
                 aagtcatgaaaaaagccGTAAACGTCATCGCAGaa                   <  1:14863091‑M2/18‑1 (MQ=255)
                 aaGTCATGTCAGAAGCCGTAAACGTCATCGCAGaa                   >  1:12977504/1‑35 (MQ=255)
                 aaGTCATGTCAGAAGCCGTAAACGTCATCGCAGaa                   >  1:7090921/1‑35 (MQ=255)
                 aaGTCATGTCAGAAGCCGTAAACGTCATCGCAGaa                   >  1:14017402/1‑35 (MQ=255)
                  aGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAg                  >  1:15162894/1‑35 (MQ=255)
                  aGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAg                  >  1:18947254/1‑35 (MQ=255)
                   gtcatgtaaaaagccGTAAACGTCATCGCAGAAgg                 <  1:5443679‑M2/20‑1 (MQ=255)
                   gtcaggaaaaaagccGTAAACGTCATCGCAGAAgg                 <  1:2460917‑M2/20‑1 (MQ=255)
                    tcatgaaaaaagccGTAAACGTCATCGCAGAAGGt                <  1:8599467‑M2/21‑1 (MQ=255)
                    tCATGTCAGAAGCCGTAAACGTCATCTCAGAAGGt                >  1:4707755/1‑35 (MQ=255)
                    tCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGt                >  1:11702605/1‑35 (MQ=255)
                    tCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGt                >  1:18465100/1‑35 (MQ=255)
                     cATGTCAGAAGCCGTAAACGTCATCGCATAAGGTg               >  1:4081837/1‑35 (MQ=255)
                     cATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTg               >  1:5592309/1‑35 (MQ=255)
                     cATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTg               >  1:1551205/1‑35 (MQ=255)
                      atgtaaaaagccGTAAACGTCATCGCAGAAGGTGa              <  1:16674347‑M2/23‑1 (MQ=255)
                       tgtaaaaagccGTAAACGTCATCGCAGAAGGTGaa             <  1:19994859‑M2/24‑1 (MQ=255)
                       tgaaaaaagccGTAAACGTCATCGCAGAAGGTGaa             <  1:18106712‑M2/24‑1 (MQ=255)
                        gtaaaaagccGTAAACGTCATCGCAGAAGGTGAAg            <  1:3627903‑M2/25‑1 (MQ=255)
                        gaaaaaagccGTAAACGTCATCGCAGAAGGTGAAg            <  1:17310271‑M2/25‑1 (MQ=255)
                        gTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAg            >  1:12415366/1‑35 (MQ=255)
                        gTCAGAAGCCGTAAACGTCATCGCAGAAGGGGAAg            >  1:16086270/1‑35 (MQ=255)
                         taaaaagccGTAAACGTCATCGCAGAAGGTGAAGt           <  1:7725638‑M2/26‑1 (MQ=255)
                         tCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGt           >  1:19271802/1‑35 (MQ=255)
                         tCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGt           >  1:16206219/1‑35 (MQ=255)
                         tCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGt           >  1:1533258/1‑35 (MQ=255)
                         tCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGt           >  1:8754822/1‑35 (MQ=255)
                         tCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGt           >  1:3831421/1‑35 (MQ=255)
                         tCAGAAGCCGTAAACGTCATCGCAGAAGGGGAAGt           >  1:861652/1‑35 (MQ=255)
                         gagaaagccGTAAACGTCATCGCAGAAGGTGAAGt           <  1:1238145‑M2/26‑1 (MQ=255)
                         aaaaaagccGTAAACGTCATCGCAGAAGGTGAAGt           <  1:15090032‑M2/26‑1 (MQ=255)
                          cAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGtt          >  1:113132/1‑35 (MQ=255)
                          cAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGtt          >  1:9631980/1‑35 (MQ=255)
                          cAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGtt          >  1:1321362/1‑35 (MQ=255)
                          aaaaagccGTAAACGTCATCGCAGAAGGTGAAGtt          <  1:3684132‑M2/27‑1 (MQ=255)
                          aaGAAGCCGTAAACGTCATCGCAGAAGGTGAAGtt          <  1:1083777/34‑1 (MQ=255)
                           aaaagccGTAAACGTCATCGCAGAAGGTGAAGTTc         <  1:12446975‑M2/28‑1 (MQ=255)
                           aaaagccGTAAACGTCATCGCAGAAGGTGAAGTTc         <  1:18680726‑M2/28‑1 (MQ=255)
                           aGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTc         >  1:5794147/1‑35 (MQ=255)
                           aGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTc         >  1:5630088/1‑35 (MQ=255)
                           aGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTc         >  1:14307094/1‑35 (MQ=255)
                           aGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTc         >  1:5368432/1‑35 (MQ=255)
                            gAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCt        >  1:15281448/1‑35 (MQ=255)
                            aaagccGTAAACGTCATCGCAGAAGGTGAGGTTCt        <  1:15847646‑M2/29‑1 (MQ=255)
                            aaagccGTAAACGTCATCGCAGAAGGTGAAGTTCt        <  1:17454208‑M2/29‑1 (MQ=255)
                            aaagccGTAAACGTCATCGCAGAAGGTGAAGTTCt        <  1:5810413‑M2/29‑1 (MQ=255)
                            aaagccGTAAACGTCATCGCAGAAGGTGAAGTTCt        <  1:20498800‑M2/29‑1 (MQ=255)
                             aagccGTAAACGTCATCGCAGAAGGTGAAGTTCTg       <  1:13695300‑M2/30‑1 (MQ=255)
                              agccGTAAACGTCATCGCAGAAGGTGAAGTTCTGc      >  1:5591226‑M2/5‑35 (MQ=255)
                              agccGTAAACGTCATCGCAGAAGGTGAAGTTCTGc      >  1:4372515‑M2/5‑35 (MQ=255)
                              agccGTAAACGTCATCGCAGAAGGTGAAGTTCTGc      >  1:15471850‑M2/5‑35 (MQ=255)
                               gccGTAAACGTCATCGCAGAAGGTGAAGTTCTGCa     <  1:10578682‑M2/32‑1 (MQ=255)
                               gccGTAAACGTCATCGCAGAAGGTGAAGTTCTGCa     >  1:15519470‑M2/4‑35 (MQ=255)
                               gccGTAAACGTCATAGCAGAAGGTGAAGTTCTGCa     <  1:20288843‑M2/32‑1 (MQ=255)
                               gCCGTAAACGTCATCGCAGACTGTGAAGTTCTGCa     >  1:14869737/1‑35 (MQ=37)
                                ccGTAAACGTCATCGCAGAAGGTGAAGTTCTGCaa    <  1:6276713‑M2/33‑1 (MQ=255)
                                ccGTAAACGTCATCGCAGAAGGTGAAGTTCTGCaa    >  1:18248977‑M2/3‑35 (MQ=255)
                                ccGTAAACGTCATCGCAGAAGGTGAAGTTCTGCaa    >  1:1905636‑M2/3‑35 (MQ=255)
                                 cGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAc   <  1:12246623‑M2/34‑1 (MQ=255)
                                 cGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAc   <  1:11310561‑M2/34‑1 (MQ=255)
                                 cGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAc   <  1:1373416‑M2/34‑1 (MQ=255)
                                 cGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAc   >  1:13281076‑M2/2‑35 (MQ=255)
                                  gTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACt  >  1:15643804/1‑35 (MQ=255)
                                  gTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACt  <  1:7794205/35‑1 (MQ=255)
                                  gTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACt  >  1:15416516/1‑35 (MQ=255)
                                  gTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACt  <  1:18137297/35‑1 (MQ=255)
                                  gTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACt  <  1:5365544/35‑1 (MQ=255)
                                  gTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACt  <  1:18646001/35‑1 (MQ=255)
                                  |                                  
TTCACTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACT  >  REL606/3269324‑3269392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.