New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1723584 =50 (0.490)4 (0.050) 3/36 NT 6.2% intergenic (‑190/‑118) ydhQ/valV hypothetical protein/tRNA‑Val
?REL606 = 2780594 110 (1.070)intergenic (‑196/‑120) cysJ/ygcM sulfite reductase, alpha subunit, flavoprotein/6‑pyruvoyl tetrahydrobiopterin synthase (PTPS)

Only 100 of 112 total aligned reads displayed.

TGAATAAAAATCGCCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGA  >  REL606/1723550‑1723618
                                  |                                  
tGAATAAAAATCGCCCTTGCAAATCAACAAAatat                                    <  1:11071656/35‑1 (MQ=255)
tGAATAAAAATCGCCCTTGCAAATCAACAAAatat                                    >  1:19717050/1‑35 (MQ=255)
tGAATAAAAATCGCCCTTGCAAATCAACAAAatat                                    <  1:12872987/35‑1 (MQ=255)
tGAATAAAAATCGCCCTTGCAAATCAACAAAatat                                    >  1:8115145/1‑35 (MQ=255)
tGAATAAAAATCGCCCTTGCAAATCAACAAAatat                                    >  1:7988035/1‑35 (MQ=255)
 gAATAAAAATCGCCCTTGCAAATCAACAAAAtata                                   >  1:6822760/1‑35 (MQ=255)
 gAATAAAAATCGCCCTTGCAAATCAACAAAAtata                                   >  1:11009697/1‑35 (MQ=255)
  aaTAAAAATCGCCCTTGCAAATCAACAAAATATAg                                  >  1:2566753/1‑35 (MQ=255)
  aaTAAAAATCGCCCTTGCAAATCAACAAAATATAg                                  >  1:15027994/1‑35 (MQ=255)
  aaTAAAAATCGCCCTTGCAAATCAACAAAATATAg                                  <  1:7016259/35‑1 (MQ=255)
  aaTAAAAATCGCCCTTGCAAATCAACAAAATATAg                                  <  1:13334051/35‑1 (MQ=255)
  aaTAAAAATCGCCCTTGCAAATCAACAAAATATAg                                  <  1:7594492/35‑1 (MQ=255)
  aaTAAAAATCGCCCTTGCAAATCAACAAAATATAg                                  <  1:11872688/35‑1 (MQ=255)
  aaTAAAAATCGCCCTTGAAAATCAACAAAATATAg                                  <  1:18030578/35‑1 (MQ=255)
    tAAAAATCGCCCTTGCAAATCAACAAAATATAGcc                                >  1:11317287/1‑35 (MQ=255)
    tAAAAATCGCCCTTGCAAATCAACAAAATATAGcc                                <  1:16711329/35‑1 (MQ=255)
      aaaaTCGCCCTTGCAAATCAACAAAATATAGCCaa                              >  1:14194591/1‑35 (MQ=255)
       aaaTCGCCCTTGCAAATCAACAAAATATAGCCAAt                             >  1:7190479/1‑35 (MQ=255)
       aaaTCGCCCTTGCAAATCAACAAAATATAGCCAAt                             >  1:9157039/1‑35 (MQ=255)
        naTCGCCCTTGCAAATCAACAAAATATAGCCAAtt                            >  1:16569081/2‑35 (MQ=255)
        aaTCGCCCTTGCAAATCAACAAAATATAGCCAAtt                            >  1:4424074/1‑35 (MQ=255)
         aTCGCCCTTGCAAATCAACAAAATATAGCCAAttt                           >  1:132593/1‑35 (MQ=255)
         aTCGCCCTTGCAAATCAACAAAATATAGCAAAttt                           <  1:13169875/35‑1 (MQ=255)
          tCGCCCTTGCAAATCAACAAAATATAGCCAATTTg                          >  1:1996479/1‑35 (MQ=255)
           cGCCCTTGCAAATCAACAAAATATAGCCAATTTGc                         >  1:19084479/1‑35 (MQ=255)
            gCCCTTGCAAATCAACAAAATATAGCCAATTTGCt                        >  1:553919/1‑35 (MQ=255)
            gCCCTTGCAAATCAACAAAATATAGCCAATTTGCt                        >  1:10377611/1‑35 (MQ=255)
              ccTTGCAAATCAACAAAATATAGCCAATTTGCTTa                      >  1:17960833/1‑35 (MQ=255)
              ccTTGCAAATCAACAAAATATAGCCAATTTGCTTa                      >  1:11492151/1‑35 (MQ=255)
               cTTGCAAATCAACAAAATATAGCCAATTTGCTTaa                     >  1:9359667/1‑35 (MQ=255)
               cTTGCAAATCAACAAAATATAGCCAATTTGCTTaa                     >  1:13101210/1‑35 (MQ=255)
               cTTGCAAATCAACAAAATATAGCCAATTTGCTTaa                     >  1:10458960/1‑35 (MQ=255)
               cTTGCAAATCAACAAAATATAGCCAATTTGCTTaa                     >  1:11288976/1‑35 (MQ=255)
                ttGCAAATCAACAAAATATATCCAATTTGCTTaaa                    >  1:17479632/1‑35 (MQ=255)
                ttGCAAATCAACAAAATATAGCCAATTTGCTTaaa                    >  1:12544419/1‑35 (MQ=255)
                 tgaaaaaaaaaaaaattTAGCCAATTTGCTTaaaa                   >  1:2353982‑M1/18‑35 (MQ=255)
                   cAAATCAACAAAATATAGCCAATTTGCTTAAAAGc                 >  1:17929949/1‑35 (MQ=255)
                   cAAATCAACAAAATATAGCCAATTTGCTTAAAAGc                 >  1:7204877/1‑35 (MQ=255)
                    aaaaaaaaaaaattTAGCCAATTTGCTTAAAAGct                >  1:9666375‑M1/15‑35 (MQ=255)
                    aaaTCAACAAAATATAGCCAATTTGCTTAAAAGct                >  1:20573813/1‑35 (MQ=255)
                    aaaTCAACAAAATATAGCCAATTTGCTTAAAAGct                >  1:18009494/1‑35 (MQ=255)
                     naTCAACAAAATATAGCCAATTTGCTTAAAAGctc               >  1:12991542/2‑35 (MQ=255)
                     aaTCAACAAAATATAGCCAATTTGCTTAAAAGctc               >  1:11834957/1‑35 (MQ=255)
                     aaTCAACAAAATATAGCCAATTTGCTTAAAAGctc               >  1:1117741/1‑35 (MQ=255)
                     aaTCAACAAAATATAGCCAATTTGCTTAAAAGctc               >  1:9596930/1‑35 (MQ=255)
                      aacaaaaaatttTAGCCAATTTGCTTAAAAGctct              >  1:17696788‑M1/13‑35 (MQ=255)
                      aaaaaaaaaattTAGCCAATTTGCTTAAAAGctct              >  1:280‑M1/13‑35 (MQ=255)
                      aTCAACAAAATATAGCCAATTTGCTTAAAAGctct              >  1:11204078/1‑35 (MQ=255)
                      aTCAACAAAATATAGCAAATTTGCTTAAAAGctct              <  1:4899374/35‑1 (MQ=255)
                       tCAACAAAATATAGCCAATTTGCTTAAAAGCTCTg             >  1:4661137/1‑35 (MQ=255)
                       tCAACAAAATATAGCCAATTTGCTTAAAAGCTCTg             >  1:6250948/1‑35 (MQ=255)
                       aaaaaaaaattTAGCCAATTTGCTTAAAAGCTCTg             >  1:1014444‑M1/12‑35 (MQ=255)
                        caacaaAATATAGCCAATTTGCTTAAAAGCTCTGc            >  1:14224330/1‑35 (MQ=255)
                        caacaaAATATAGCCAATTTGCTTAAAAGCTCTGc            >  1:15188852/1‑35 (MQ=255)
                        caacaaAATATAGCCAATTTGCTTAAAAGCTCTGc            >  1:19812491/1‑35 (MQ=255)
                        caacaaAATATAGCCAATTTGCTTAAAAGCTCTGc            >  1:19010575/1‑35 (MQ=255)
                         aacaaAATATAGCCAATTTGCTTAAAAGCTCTGCa           >  1:1061742/1‑35 (MQ=255)
                         aacaaAATATAGCCAATTTGCTTAAAAGCTCTGCa           >  1:5013030/1‑35 (MQ=255)
                          acaaAATATAGCCAATTTGCTTAAAAGCTCTGCaa          >  1:16663112/1‑35 (MQ=255)
                           aaaatTATAGCCAATTTGCTTAAAAGCTCTGCaaa         <  1:6832383/34‑1 (MQ=255)
                            aaatttTAGCCAATTTGCTTAAAAGCTCTGCAAAc        >  1:19696772‑M1/7‑35 (MQ=255)
                            aaatTATAGCCAATTTGCTTAAAAGCTCTGCAAAc        <  1:2746589/35‑1 (MQ=255)
                            aaaattTAGCCAATTTGCTTAAAAGCTCTGCAAAc        >  1:5382297‑M1/7‑35 (MQ=255)
                            aaaaTATAGCCAATTTGCTTAAAAGCTCTGCAAAc        >  1:5764796/1‑35 (MQ=255)
                            aaaaTATAGCCAATTTGCTTAAAAGCTCTGCAAAc        >  1:5813114/1‑35 (MQ=255)
                            aaaaTATAGCCAATTTGCTTAAAAGCTCTGCAAAc        >  1:14926573/1‑35 (MQ=255)
                            aaaaTATAGCCAATTTGCTTAAAAGCTCTGCAAAc        >  1:18862792/1‑35 (MQ=255)
                             aaattTAGCCAATTTGCTTAAAAGCTCTGCAAACg       >  1:8424190‑M1/6‑35 (MQ=255)
                             aaaTATAGCCAATTTGCTTAAAAGCTCTGCAAACg       >  1:11215518/1‑35 (MQ=255)
                              aaTATAGCCAATTTGCTTAAAAGCTCTGCAAACgg      >  1:11097133/1‑35 (MQ=255)
                              aaTATAGCCAATTTGCTTAAAAGCTCTGCAAACgg      >  1:3748004/1‑35 (MQ=255)
                               tttTAGCCAATTTGCTTAAAAGCTCTGCAAACGGt     >  1:17105628‑M1/4‑35 (MQ=255)
                               attTAGCCAATTTGCTTAAAAGCTCTGCAAACGGt     >  1:16297765‑M1/4‑35 (MQ=255)
                               atatAGCCAATTTGCTTAAAAGCTCTGCAAACgga     >  1:3810306/1‑34 (MQ=255)
                               atatAGCCAATTTGCTTAAAAGCTCTGCAAACGGt     <  1:14618566/35‑1 (MQ=255)
                               atatAGCCAATTTGCTTAAAAGCTCTGCAAACGGt     >  1:19165912/1‑35 (MQ=255)
                               atatAGCCAATTTGCTTAAAAGCTCTGCAAACGGt     >  1:14190419/1‑35 (MQ=255)
                               atatAGCCAATTTGCTTAAAAGCTCTGCAAACGGt     >  1:3871723/1‑35 (MQ=255)
                               atatAGCCAATTTGCTTAAAAGCTCTGCAAACGGt     >  1:11623558/1‑35 (MQ=255)
                                ttTAGCCAATTTGCTTAAAAGCTCTGCAAACGGTc    >  1:6993245‑M1/3‑35 (MQ=255)
                                ttTAGCCAATTTGCTTAAAAGCTCTGCAAACGGTc    >  1:5750008‑M1/3‑35 (MQ=255)
                                ttTAGCCAATTTGCTTAAAAGCTCTGCAAACGGTc    >  1:5578276‑M1/3‑35 (MQ=255)
                                ttTAGCCAATTTGCTTAAAAGCTCTGCAAACGGTc    >  1:15692265‑M1/3‑35 (MQ=255)
                                tataGCCAATTTGCTTACAAGCTCTGCAAACGGTc    >  1:17968091/1‑35 (MQ=255)
                                tataGCCAATTTGCTTAAAAGCTCTGCAAACGGTc    >  1:5144741/1‑35 (MQ=255)
                                 tTAGCCAATTTGCTTAAAAGCTCTGCAAACGGTCg   >  1:1039772‑M1/2‑35 (MQ=255)
                                 tTAGCCAATTTGCTTAAAAGCTCTGCAAACGGTCg   >  1:15562145‑M1/2‑35 (MQ=255)
                                 tTAGCCAATTTGCTTAAAAGCTCTGCAAACGGTCg   >  1:1519610‑M1/2‑35 (MQ=255)
                                 ataGCCAATTTGCTTAAAAGCTCTGCAAACGGTCg   >  1:5082811/1‑35 (MQ=255)
                                 ataGCCAATTTGCTTAAAAGCTCTGCAAACGGTCg   >  1:13233778/1‑35 (MQ=255)
                                 ataGCCAATTTGCTTAAAAGCTCTGCAAACGGTCg   >  1:2853899/1‑35 (MQ=255)
                                 ataGCCAATTTGCTTAAAAGCTCTGCAAACGGTCg   >  1:5372301/1‑35 (MQ=255)
                                 ataGCCAATTTGCTTAAAAGCTCTGCAAACGGTCg   >  1:1475561/1‑35 (MQ=255)
                                  taGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGa  >  1:19373028/1‑35 (MQ=255)
                                  taGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGa  >  1:14566858/1‑35 (MQ=255)
                                  taGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGa  <  1:13475426/35‑1 (MQ=255)
                                  taGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGa  >  1:6379910/1‑35 (MQ=255)
                                  taGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGa  >  1:5216891/1‑35 (MQ=255)
                                  taGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGa  >  1:2531927/1‑35 (MQ=255)
                                  taGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGa  >  1:20194159/1‑35 (MQ=255)
                                  |                                  
TGAATAAAAATCGCCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGA  >  REL606/1723550‑1723618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.