New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3320231 | NA (NA) | 11 (0.180) | 3/28 | NT | 25.5% | intergenic (‑312/+118) | tldD/yhdP | predicted peptidase/conserved membrane protein, predicted transporter |
? | REL606 | = 3686161 | 55 (0.540) | coding (401/741 nt) | yiaT | hypothetical protein |
CGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAT > REL606/3320221‑3320265 | cGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTg < 1:5126818/35‑1 (MQ=32) cGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTg < 1:12881510/35‑1 (MQ=32) atCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa < 1:9942183/34‑1 (MQ=25) tCGCATCAGGCAACGGCTGCCGGATGCGGCGTGaa < 1:2776713/35‑1 (MQ=38) tCGCATCAGGCAACGGCTGCCGGATGCGGCGTGaa < 1:18458558/35‑1 (MQ=38) cccATCAGGCAACGGCTGCCGGATGCGGCGTGAAc < 1:18415383/33‑1 (MQ=255) cacATCAGGCACCGGCTGCCGGATGCGGCGTGAAc < 1:20443678/33‑1 (MQ=14) cGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc < 1:6346433/35‑1 (MQ=38) gCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:5186678/35‑1 (MQ=38) gCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:4601435/35‑1 (MQ=38) gCATCAGGCAACGGCTGCCAGATGCGGCGTGAACg < 1:8967426/35‑1 (MQ=255) cATCAGGCAACGGCTGCCGGATGCGGCGTGAACGc < 1:15770177/35‑1 (MQ=38) cATCAGGCAACGGCTGCCGGATGCGGCGTGAACGc < 1:8649199/35‑1 (MQ=38) aTCAGGCACCGGCTGCCGGATGCGGCGTGAACGcc < 1:18778651/35‑1 (MQ=255) tCAGGCAACGGCTGCCGGATGCGGCGTGAACGccc < 1:10891520/35‑1 (MQ=40) tCAGGCAACGGCTGCCGGATGCGGCGTGAACGccc < 1:3918446/35‑1 (MQ=40) gaGGGAACGGCTGCCGGATGCGGCGTGAACGCCCt < 1:15508014/34‑1 (MQ=255) cgggCAACGGCTGCCGGATGCGGCGTGAACGCCCt < 1:15507465/33‑1 (MQ=255) cAGGCACCGGCTGCCGGATGCGGCGTGAACGCCCt < 1:3986136/35‑1 (MQ=255) cAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCt < 1:13836857/35‑1 (MQ=255) cAGCCAACGGCTGCCGGATGCGGCGTGAACGCCCt < 1:11894280/35‑1 (MQ=255) aGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTa < 1:11120422/35‑1 (MQ=255) aGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTa < 1:5239008/35‑1 (MQ=255) aGGCAACGGCTGCCGGATGCGGAGTGAACGCCCTa < 1:1401871/35‑1 (MQ=255) ggCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt < 1:2506746/35‑1 (MQ=255) | CGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAT > REL606/3320221‑3320265 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |