New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1539621 =78 (0.760)11 (0.140) 5/38 NT 16.2% coding (51/2400 nt) dos cAMP phosphodiesterase, heme‑regulated
?REL606 3527786 = 52 (0.640)coding (449/1110 nt) livK leucine transporter subunit

Only 100 of 129 total aligned reads displayed.

GGGCTTCACCGTCTCAAGAATGTATTTTGCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTACG  >  REL606/3527752‑3527820
                                  |                                  
gggCTTCACCGTCTCAAGAATGTATTTTGccgccg                                    >  1:16319693/1‑35 (MQ=255)
gggCTTCACCGTCTCAAGAATGTATTTTGccgccg                                    >  1:3018201/1‑35 (MQ=255)
 ggCTTCACCGTCTCAAGAATGTATTTTGCCGCCGt                                   >  1:16110584/1‑35 (MQ=255)
 ggCTTCACCGTCTCAAGAATGTATTTTGCCGCCGt                                   >  1:14876327/1‑35 (MQ=255)
 ggCTTCACCGTCTCAAGAATGTATTTTGCCGCCGt                                   >  1:8587826/1‑35 (MQ=255)
 ggCTTCACCGTCTCAAGAATGTATTTTGCCGCCGt                                   >  1:19603024/1‑35 (MQ=255)
 ggCTTCACCGTCTCAAGAATGTATTTTGCCGCCGt                                   >  1:14167616/1‑35 (MQ=255)
  gCTTCACCGTCTCAAGAATGTATTTTGCCGCCGtt                                  >  1:14627952/1‑35 (MQ=255)
    ttCACCGTCTCAAGAATGTATTTTGCCGCCGTTgg                                >  1:14829128/1‑35 (MQ=255)
     tCACCGTCTCAAGAATGTATTTTGCCGCCGTTGGc                               >  1:3856221/1‑35 (MQ=255)
      cACCGTCTCAAGAATGTATTTTGCCGCCGTTGGcc                              >  1:815432/1‑35 (MQ=255)
      cACCGTCTCAAGAATGTATTTTGCCGCCGGTggac                              >  1:9103891/1‑33 (MQ=25)
       aCCGTCTCAAGAATGTATTTTGCCGCCGTTGGgcc                             >  1:3981198/1‑35 (MQ=255)
       aCCGTCTCAAGAATGTATTTTGCCGCCGTTGGccc                             >  1:13297487/1‑35 (MQ=255)
         cGTCTCAAGAATTTATTTTGCCGCCGTTGGCCCCt                           >  1:47450/1‑35 (MQ=255)
         cGTCTCAAGAATGTATTTTGCCGCCGTTGGccccc                           >  1:19372504/1‑34 (MQ=255)
         cGTCTCAAGAATGTATTTTGCCGCCGTTGGccccc                           >  1:203988/1‑34 (MQ=255)
         cGTCTCAAGAATGTATTTTGCCGCCGTTGGGCCCt                           >  1:1663539/1‑35 (MQ=255)
         cGTCTCAAGAATGTATTTTGCCGCCGTTGGCCCCt                           >  1:13451195/1‑35 (MQ=255)
         cGTCTCAAGAATGTATTTTGCCGCCGTTGGCCCCt                           >  1:5392569/1‑35 (MQ=255)
          gTCTCAAGAATGTATTTTGCCGCCGTTGGCCCCtc                          >  1:8048188/1‑34 (MQ=255)
          gTCTCAAGAATGTATTTTGCCGCCGTTGGCCCCTg                          >  1:19809675/1‑35 (MQ=255)
          gTCTCAAGAATGTATTTTGCCGCCGTTGGCCCCTg                          >  1:7379677/1‑35 (MQ=255)
            ctcAAGAATGTATTTTGCCGCCGTTGGCCCCTggg                        >  1:3300968/1‑35 (MQ=255)
            ctcAAGAATGTATTTTGCCGCCGTTGGCCCCTggg                        >  1:13696847/1‑35 (MQ=255)
             tcAAGAATGTATTTTGCCGCCGTTGGCCCCTGGGa                       >  1:19784557/1‑35 (MQ=255)
             tcAAGAATGTATTTTGCCGCCGTTGGCCCCTGGGa                       >  1:11474826/1‑35 (MQ=255)
             tcAAGAATGTATTTTGCCGCCGTTGGCCCCTGGGa                       >  1:6107157/1‑35 (MQ=255)
             tcAAGAATGTATTTTGCCGCCGTTGGCCCCTGGGa                       >  1:9305323/1‑35 (MQ=255)
              cAAGAATGTTTTTTCCAGCCGTTGGCCCCTGGGaa                      <  1:16546021/35‑1 (MQ=25)
              cAAGAATGTATTTTGCCGCCGTTGGCCCCCGGGaa                      >  1:10607140/1‑35 (MQ=255)
               aaGATTGTTTTTTCCCGCCGTTGGCCCCTGGGAag                     <  1:10972953/35‑1 (MQ=25)
               aaGAATTTTTTTCCCCGCCGTTGGCCCCTGGGAag                     <  1:17589819/35‑1 (MQ=9)
               aaGAATGTATTTTGCCGCCGTTGGCCCCTGGGAag                     >  1:14392424/1‑35 (MQ=255)
               aaGAATGTATTTTGCCGCCGTTGGCCCCTGGGAag                     >  1:18965151/1‑35 (MQ=255)
                aaaatttttttccccgccGTTGGCCCCTGGGAaga                    <  1:9660419‑M2/17‑1 (MQ=255)
                aGAATGTATTTTGCCGCCGTTGGCCCCTGGGAaga                    >  1:3268479/1‑35 (MQ=255)
                 gAATGTATTTTGCCGCCGTTGGCCCCTGGGAagag                   >  1:8366388/1‑35 (MQ=255)
                 gAATGTATTTTGCCGCCGTTGGCCCCTGGGAagag                   >  1:12709631/1‑35 (MQ=255)
                 gAATGTATTTTGCCGCCGTTGGCCCCTGGGAagag                   >  1:17338663/1‑35 (MQ=255)
                 gAATGTATTTTGCCGCCGTTGGCCCCTGGGAagag                   >  1:18087766/1‑35 (MQ=255)
                  attttttttccccgccGTTGGCCCCTGGGAAGAGt                  <  1:12168449‑M2/19‑1 (MQ=255)
                  aaTGTATTTTGCCGCCGTTGGCCCCTGGGAAGAGt                  >  1:10944439/1‑35 (MQ=255)
                  aaTGTATTTTGCCGCCGTTGGCCCCTGGGAAGAGt                  >  1:14982870/1‑35 (MQ=255)
                  aaTGTATTTTGCCGCCGTTGGCCCCTGGGAAGAGt                  >  1:3068429/1‑35 (MQ=255)
                   gtGTATTTCGCCGCCGTTGGCCCCTGGGAAGAGTc                 <  1:15994816/34‑1 (MQ=255)
                   atttttttccccgccGTTGGCCCCTGGGAAGAGTc                 <  1:16834771‑M2/20‑1 (MQ=255)
                   aTGTATTTTGCCGCCGTTGGCCCCTGGGAAGAGTc                 >  1:356462/1‑35 (MQ=255)
                    tttttttccccgccGTTGGCCACTGGGAAGAGTcc                <  1:5902689‑M2/21‑1 (MQ=255)
                    tgtttttccccgccGTTGGCCCCTGGGAAGAGTcc                <  1:13282931‑M2/21‑1 (MQ=255)
                    tGTATTTTGCCGCCGTTGGCCCCTGTGAAGAGTcc                >  1:10818927/1‑35 (MQ=255)
                     ttttttccccgccGTTGGCCCCTGGGAAGAGTCCa               <  1:15140067‑M2/22‑1 (MQ=255)
                     ttatttccccgccGTTGGCCCCTGGGAAGAGTCCa               <  1:17159259‑M2/22‑1 (MQ=255)
                     gtttttccccgccGTTGGCCCCTGGGAAGAGTCCa               <  1:13309650‑M2/22‑1 (MQ=255)
                     gTATTTTGCCGCCGTTGGCCCCTGGGAAGAGTCCa               >  1:2814065/1‑35 (MQ=255)
                      tttttccccgccGTTGGCCCCTGGGAAGAGTCCAg              <  1:2207069‑M2/23‑1 (MQ=255)
                      tATTTTGCCGCCGTTGGCCCCTGGGAAGAGTCCAg              >  1:6728744/1‑35 (MQ=255)
                       tttcccccgccGTTGGCCCCTGGGAAGAGTCCAGc             <  1:2147787‑M2/24‑1 (MQ=255)
                       aTTTTGCCGCCGTTGGCCCCTGGGAAGAGTCCAGc             >  1:11289358/1‑35 (MQ=255)
                       aTTTTGCCGCCGTTGGCCCCTGGGAAGAGTCCAGc             >  1:10666242/1‑35 (MQ=255)
                        ttttGCCGCCGTTGGCCCCTGGGAAGAGTCCAGcc            >  1:10434527/1‑35 (MQ=255)
                        ttcccccgccGTTGGCCCCTGGGAAGAGTCCAGcc            <  1:14228584‑M2/25‑1 (MQ=255)
                         tttcccgccGTTGGCCCCTGGGAAGAGTCCAGccc           <  1:7347143‑M2/26‑1 (MQ=255)
                         tttGCCGCCGTTGGCCCCTGGGAAGATTCCAGccc           >  1:4777462/1‑35 (MQ=255)
                         tttGCCGCCGTTGGCCCCTGGGAAGAGTCCAGccc           >  1:8665800/1‑35 (MQ=255)
                         tttGCCGCCGTTGGCCCCTGGGAAGAGTCCAGccc           >  1:11384322/1‑35 (MQ=255)
                         tttGCCGCCGTTGGCCCCTGGGAAGAGTCCAGccc           >  1:19235421/1‑35 (MQ=255)
                         ttccccgccGTTGGCCCCTGGGAAGAGTCCAGccc           <  1:13678177‑M2/26‑1 (MQ=255)
                         ttccccgccGTTGGCCCCTGGGAAGAGTCCAGccc           <  1:65846‑M2/26‑1 (MQ=255)
                         ttccccgccGTTGGCCCCTGGGAAGAGTCCAGccc           <  1:15224021‑M2/26‑1 (MQ=255)
                         tcccccgccGTTGGCCCCTGGGAAGAGTCCAGccc           <  1:14740056‑M2/26‑1 (MQ=255)
                          tccccgccGTTGGCCCCTGGGAAGAGTCCAGCCCg          <  1:17185309‑M2/27‑1 (MQ=255)
                          gccccgccGTTGGCCCCTGGGAAGAGTCCAGCCCg          <  1:7626006‑M2/27‑1 (MQ=255)
                           gcccgccGTTGGCCCCTGGGAAGAGTCCAGCCCgg         <  1:19832829‑M2/28‑1 (MQ=255)
                           ccccgccGTTGGCCCCTGGGAAGAGTCCAGCCCgg         <  1:7921637‑M2/28‑1 (MQ=255)
                           ccccgccGTTGGCCCCTGGGAAGAGTCCAGCCCgg         <  1:2585763‑M2/28‑1 (MQ=255)
                            gccgccGTTGGCCCCTGGGAAGAGTCCAGCCCGGc        >  1:19337513/1‑35 (MQ=255)
                            cccgccGTTGGCCCCTGGGAAGAGTCCAGCCCGGc        <  1:14369371‑M2/29‑1 (MQ=255)
                            cccgccGTTGGCCCCGGGGAAGAGTCCAGCCCGGc        <  1:8100455‑M2/29‑1 (MQ=255)
                            accgccGTTGGCCCCTGGGAAGAGTCCAGCCCGGc        <  1:2440379‑M2/29‑1 (MQ=255)
                             ccgccGTTGGCCCCTGGGAAGAGTCCAGCCCGGCa       <  1:4918719‑M2/30‑1 (MQ=255)
                              cgccGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAg      >  1:17040026‑M2/5‑35 (MQ=255)
                              cgccGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAg      <  1:16554847‑M2/31‑1 (MQ=255)
                               gccGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGt     >  1:8733168‑M2/4‑35 (MQ=255)
                               gccGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGt     >  1:18577446‑M2/4‑35 (MQ=255)
                               gccGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGt     >  1:7419321‑M2/4‑35 (MQ=255)
                                ccGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTa    >  1:971959‑M2/3‑35 (MQ=255)
                                ccGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTa    >  1:13040528‑M2/3‑35 (MQ=255)
                                 cGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAc   <  1:18951218‑M2/34‑1 (MQ=255)
                                 cGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAc   >  1:13673035‑M2/2‑35 (MQ=255)
                                 cGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAc   >  1:11160578‑M2/2‑35 (MQ=255)
                                 cGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAc   <  1:10221696‑M2/34‑1 (MQ=255)
                                 cGTTGGCCCCTGGGAAGAGTCCAGACCGGCAGTAc   <  1:7530472‑M2/34‑1 (MQ=255)
                                  gTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTACg  <  1:8091912/35‑1 (MQ=255)
                                  gTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTACg  <  1:5445067/35‑1 (MQ=255)
                                  gTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTACg  >  1:5307738/1‑35 (MQ=255)
                                  gTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTACg  >  1:4778569/1‑35 (MQ=255)
                                  gTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTACg  >  1:19164998/1‑35 (MQ=255)
                                  gTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTACg  <  1:915234/35‑1 (MQ=255)
                                  gTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTACg  >  1:9206769/1‑35 (MQ=255)
                                  |                                  
GGGCTTCACCGTCTCAAGAATGTATTTTGCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTACG  >  REL606/3527752‑3527820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.