New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1830987 =34 (0.330)6 (0.080) 4/36 NT 13.9% coding (221/1359 nt) ydjE predicted transporter
?REL606 = 1996585 49 (0.640)coding (1262/1644 nt) yeeO predicted multidrug efflux system

Only 100 of 107 total aligned reads displayed.

CTGGGTGTAAAACGATGCCATAACCCCGGCAAAGGGAGCCGTTAGCCAGGCGATGGCCGTTAATCCAAG  >  REL606/1996551‑1996619
                                   |                                  
cTGGGTGTAAAACGATGCCATAACCCCGGCAAAgg                                    >  1:18149595/1‑35 (MQ=255)
cTGGGTGTAAAACGATGCCATAACCCCGGCAAAgg                                    >  1:12702890/1‑35 (MQ=255)
cTGGGTGTAAAACGATGCCATAACCCCGGCAAAgg                                    <  1:3188620/35‑1 (MQ=255)
cTGGGTGTAAAACGATGCCATAACCCCGGCAAAgg                                    >  1:6432158/1‑35 (MQ=255)
 tGGGTGTAAAACGATGCCATAACCCCGGCAAAGGg                                   <  1:14915155‑M2/35‑2 (MQ=255)
 tGGGTGTAAAACGATGCCATAACCCCGGCAAAGGg                                   >  1:2679925‑M2/1‑34 (MQ=255)
 tGGGTGTAAAACGATGCCATAACCCCGGCAAAGGg                                   <  1:10585439‑M2/35‑2 (MQ=255)
  gggTGTAAAACGATGCCATAACCCCGGCAAAGGga                                  >  1:12485819‑M2/1‑33 (MQ=255)
  gggTGTAAAACGATGCCATAACCCCGGCAAAGGga                                  <  1:5687446‑M2/35‑3 (MQ=255)
  gggTGTAAAACGATGCCATAACCCCGGCAAAGGga                                  >  1:11943329‑M2/1‑33 (MQ=255)
  gggTGTAAAACGATGCCATAACCCCGGCAAAGGga                                  <  1:10818660‑M2/35‑3 (MQ=255)
   ggTGTAAAACGATGCCATAACCCCTGCAAAGGgag                                 <  1:3786344‑M2/35‑4 (MQ=255)
   ggTGTAAAACGATGCCATAACCCCGGCAAAGGgag                                 <  1:10666178‑M2/35‑4 (MQ=255)
   ggTGTAAAACGATGCCATAACCCCGGCAAAGGgag                                 <  1:16930980‑M2/35‑4 (MQ=255)
   ggTGTAAAACGATGCCATAACCCCGGCAAAGGTAg                                 >  1:919049/1‑35 (MQ=255)
    gtgtAAACCGATGCCATAACCCCGGCAAAGGgagc                                >  1:13475329‑M2/1‑31 (MQ=255)
    gtgtAAAACGATGCCATAACCTCGGCAAAGGgagc                                <  1:9361167‑M2/35‑5 (MQ=255)
    gtgtAAAACGATGCCATAACCCCGGCAAAGGgagc                                <  1:2176140‑M2/35‑5 (MQ=255)
     tgtAAAACGATGCCATAACCCCGGCAAAGGgagcc                               >  1:1586854‑M2/1‑30 (MQ=255)
     tgtAAAACGATGCCATAACCCCGGCAAAGGgagcc                               >  1:4810066‑M2/1‑30 (MQ=255)
     tgtAAAACGATGCCATAACCCCGGCAAAGGgagcc                               <  1:7030298‑M2/35‑6 (MQ=255)
     tgtAAAACGATGCCATAACCCCGGCAAAGGgagcc                               >  1:6463181‑M2/1‑30 (MQ=255)
       tAAAACGATGCCATAACCCCGGCAAAGGgagcagt                             >  1:10828241‑M2/1‑28 (MQ=255)
       tAAAACGATGCCATAACCCCGGCAAAGGGAGCCGt                             <  1:3076909/35‑1 (MQ=255)
        aaaaCGATGCCATAACCCCGGCAAAGGGAGCCGtt                            >  1:6995775/1‑35 (MQ=255)
        aaaaCGATGCCATAACCCCGGCAAAGGGAGCCGtt                            >  1:5262795/1‑35 (MQ=255)
         aaaCGATGCCATAACCCCGGCAAAGGGAGCCGTTa                           >  1:546377/1‑35 (MQ=255)
          aaCGATGCCATAACCCCGGCAAAGGGAGCCGTTAg                          <  1:12389922/35‑1 (MQ=255)
          aaCGATGCCATAACCCCGGCAAAGGGAGCCGTTAg                          >  1:11225053/1‑35 (MQ=255)
           aCGATGCCATAACCCCGGCAAAGGGAGCCGTTAGc                         >  1:19457377/1‑35 (MQ=255)
           aCGATGCCATAACCCCGGCAAAGGGAGCCGTTAGc                         >  1:6192058/1‑35 (MQ=255)
            cGATGCCATAACCCCGGCAAAGGGAGCCGTTAGcc                        >  1:19575063/1‑35 (MQ=255)
             gATGCCATAACCCCGGCAAAGGGAGCCGTTAGCCa                       >  1:5413516/1‑35 (MQ=255)
             gATGCCATAACCCCGGCAAAGGGAGCCGTTAGCCa                       >  1:15989559/1‑35 (MQ=255)
             gATGCCATAACCCCGGCAAAGGGAGCCGTTAGCCa                       >  1:3841688/1‑35 (MQ=255)
              gtGCCAAAACCCCGGGAAAGGGGAGCCGTTAGCCa                       <  1:11707811/34‑1 (MQ=16)
              aTGCCATAACCCCGGCAAAGGGAGCCGTTAGCCAg                      >  1:19103684/1‑35 (MQ=255)
              aTGCCATAACCCCGGCAAAGGGAGCCGTTAGCCAg                      >  1:15673378/1‑35 (MQ=255)
              aTGCCATAACCCCGGCAAAGGGAGCCGTTAGCCAg                      >  1:10500388/1‑35 (MQ=255)
              aTGCCATAACCCCGGCAAAGGGAGCCGTTAGCCAg                      >  1:6804165/1‑35 (MQ=255)
              aTGCCATAACCCCGGCAAAGGGAGCCGTTAGCCAg                      >  1:17934138/1‑35 (MQ=255)
                gCCATACCCCCGGCAAGGGGAGCCGTTAGCCAGGc                    <  1:12927891/35‑1 (MQ=37)
                gCCATAACCCCGGCAAAGGGAGCCGTTAGCCAGGc                    >  1:5479504/1‑35 (MQ=255)
                 ccATAACCCCGGCAAAGGGAGCCGTTAGCCAGGCg                   >  1:4056916/1‑35 (MQ=255)
                 ccATAACCCCGGCAAAGGGAGCCGTTAGCCAGGCg                   >  1:3772073/1‑35 (MQ=255)
                 ccATAACCCCGGCAAAGGGAGCCGTTAGCCAGGCg                   >  1:918239/1‑35 (MQ=255)
                  cATAACCCCGGCAAAGGGAGCCGTTAGCCAGGCGa                  >  1:8496427/1‑35 (MQ=255)
                  cATAACCCCGGCAAAGGGAGCCGTTAGCCAGGCGa                  >  1:20393728/1‑35 (MQ=255)
                  aaTACCCCCGGCAAGGGGAGCCGTTAGCCAGGCGa                  <  1:12821114/34‑1 (MQ=37)
                   aTAACCCCGGCAAAGGGAGCCGTTAGCCAGGCGAt                 >  1:16219801/1‑35 (MQ=255)
                   aTAACCCCGGCAAAGGGAGCCGTTAGCCAGGCGAt                 >  1:1930889/1‑35 (MQ=255)
                    tacccccGGCAAGGGGAGCCGTTAGCCAGGCGATg                <  1:19387946/32‑1 (MQ=37)
                    tacccccGGCAAAGGGAGCCGTTAGCAAGGCGATg                <  1:13290381/32‑1 (MQ=38)
                    tacccccGGAAAGGGGAGCCGTTAGCCAGGCGATg                <  1:14340223/32‑1 (MQ=25)
                    gacccccGGAAAGGGGAGCCGTTAGCCAGGCGATg                <  1:8642628/32‑1 (MQ=25)
                     acccccGGCAAGGGGAGCCGTTAGCCAGGCGATgg               <  1:10202426/33‑1 (MQ=38)
                     acccccGGCAAGGGGAGCCGTTAGCCAGGCGATgg               <  1:6818704/33‑1 (MQ=38)
                     acccccGGCAAAGGGAGCCGTTAGCCAGGCGATgg               <  1:1023700/33‑1 (MQ=255)
                     acccccGGAAAAGGGAGCCGTTAGCCAGGCGATgg               <  1:14821932/33‑1 (MQ=37)
                     acccccGAAAAGGGGAGCCGTTAGCCAGGCGATgg               <  1:3902071/33‑1 (MQ=21)
                     aaCCCCGGCAAAGGGAGCCGTTAGCCAGGCGATgg               >  1:1820244/1‑35 (MQ=255)
                     aaCCCCGGCAAAGGGAGCCGTTAGCCAGGCGATgg               >  1:10248037/1‑35 (MQ=255)
                      cccccgGGAAAGGgagccgatgaaataaccaaaca              >  1:2694542‑M2/2‑13 (MQ=255)
                      cccccGGCAAGGGGAGCCATTAGCCAGGCGATGGc              <  1:5198578/34‑1 (MQ=25)
                       ccccGGGAAAGGgagccgatgaaataaccaaacat             >  1:6924732‑M2/1‑12 (MQ=255)
                       ccccGGGAAAGGgagccgatgaaataaccaaacat             >  1:15027576‑M2/1‑12 (MQ=255)
                       ccccGGCAAAGGGAGCCGTTAGCCAGGCGATGGcc             >  1:4200826/1‑35 (MQ=255)
                       ccccGGAAAGGGGAGCCGTTAGCCAGGCGATGGcc             <  1:3595389/35‑1 (MQ=37)
                       ccccGGAAAGGGGAGCCGTTAGCCAGGCGATGGcc             <  1:4895207/35‑1 (MQ=37)
                        cccGGGAAAGGgagccgatgaaataaccaaacatt            >  1:3944599‑M2/1‑11 (MQ=255)
                        cccGGCAAAGGGAGCCGTTAGCCAGGCGATGGCCg            >  1:6210000/1‑35 (MQ=255)
                        cccGGCAAAGGGAGCCGTTAGCCAGGCGATGGCCg            >  1:13927290/1‑35 (MQ=255)
                        cccGGCAAAGGGAGCCGTTAGCCAGGCGATGGCCg            >  1:15901259/1‑35 (MQ=255)
                         ccGGGAAAGGGGAGCCGTTAGCCAGGCGATGGCCg            <  1:5556690/35‑1 (MQ=25)
                         ccGGGAAAGGgagccgatgaaataaccaaacatta           >  1:4623321‑M2/1‑10 (MQ=255)
                         ccGGCAAAGGGAGCCGTTAGCCAGGCGATGGCCgg           >  1:6020417/1‑34 (MQ=255)
                          cGGCAAAGGGAGCCGTTAGCCAGGCGATGGCCggt          >  1:11492080/1‑33 (MQ=255)
                          cGGCAAAGGGAGCCGTTAGCCAGGCGATGGCCggt          >  1:8839749/1‑33 (MQ=255)
                           ggGAAAGGgagccgatgaaataaccaaacattaat         >  1:12789494‑M2/1‑8 (MQ=255)
                            gCAAAGGGAGCCGTTAGCCAGGCGATGGCCGGTaa        >  1:5045189/1‑35 (MQ=255)
                            gCAAAGGGAGCCGTTAGCCAGGCGATGGCCGGTaa        >  1:2065898/1‑35 (MQ=255)
                            gCAAAGGGAGCCGTTAGCCAGGCGATGGCAGTTaa        <  1:16815695/35‑1 (MQ=255)
                             gaaggGgagccgatgaaataaccaaacattaatgc       >  1:9581073‑M2/2‑6 (MQ=255)
                             gaaggGgagccgatgaaataaccaaacattaatgc       >  1:13457623‑M2/2‑6 (MQ=255)
                              aaaGGGAGCCGTTAGCCAGGCGATGGCCGGTAATc      >  1:1644478/1‑35 (MQ=255)
                              aaaGGGAGCCGTTAGCCAGGCGATGGCCGGTAATc      >  1:13802962/1‑35 (MQ=255)
                              aaaGGGAGCCGTTAGCCAGGCGATGGCCGGTAATc      >  1:13014881/1‑35 (MQ=255)
                              aaaGGGAGCCGTTAGCCAGGCGATGGCCGGTAATc      >  1:7391439/1‑35 (MQ=255)
                              aaaGGGAGCCGTTAGCCACGCGATGGCCGGTAATc      >  1:8821876/1‑35 (MQ=37)
                               aaGGgagccgatgaaataaccaaacattaatgccg     >  1:135099‑M2/1‑4 (MQ=255)
                               aaGGGAGCCGTTAGCCAGGCGATGGCCGTTAATcc     >  1:10853889/1‑35 (MQ=255)
                               aaGGGAGCCGTTAGCCAGGCGATGGCCGTTAACcc     >  1:12240553/1‑35 (MQ=255)
                               aaGGGAGCCGTTAGCCAGGCGATGGCCCCTAATcc     >  1:18867582/1‑35 (MQ=37)
                                aGGGAGCCGTTAGCCAGGCGATGGCCGGTAATccc    >  1:10143151/1‑34 (MQ=255)
                                 ggggagccgatgaaataaccaaacattaatgccga    >  1:6340809‑M2/2‑3 (MQ=255)
                                  gggagccgatgaaataaccaaacattaatgccgag   >  1:13517369‑M2/1‑2 (MQ=255)
                                  gggAGCCGTTAGCCAGGCGATGGCCGGTAAACCaa   >  1:16227241/1‑35 (MQ=37)
                                  gggAGCCGTTAGCCAGGCGATGGCCGGTAAACCaa   >  1:19825291/1‑35 (MQ=37)
                                   ggAGCCGTTAGCCAGGCGATGGCCGGTAATCCaaa  >  1:10268467/1‑34 (MQ=255)
                                   ggAGCCGTTAGCCAGGCGATGGCCGGTAATCCAag  >  1:8208385/1‑35 (MQ=255)
                                   |                                  
CTGGGTGTAAAACGATGCCATAACCCCGGCAAAGGGAGCCGTTAGCCAGGCGATGGCCGTTAATCCAAG  >  REL606/1996551‑1996619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.