New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 386696686 (0.840)18 (0.180) 8/46 NT 20.6% intergenic (‑32/+254) bglG/phoU transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
?REL606 = 3887469 56 (0.570)intergenic (‑105/‑47) asnC/asnA DNA‑binding transcriptional dual regulator/asparagine synthetase AsnA

Only 100 of 158 total aligned reads displayed.

CATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT  >  REL606/3866932‑3867000
                                  |                                  
 aTAGCAAGGACCTTTTTTATAAACAAAAAAACCCg                                   >  1:15685166/1‑35 (MQ=255)
 aTAGCAAGGACCTTTTTTATAAACAAAAAAACCCg                                   <  1:19755877/35‑1 (MQ=255)
  tAGCAAGGACCTTTTTTATAAACAAAAAAACCCGa                                  >  1:7823214/1‑35 (MQ=255)
  tAGCAAGGACCTTTTTTATAAACAAAAAAACCCGa                                  <  1:3474614/35‑1 (MQ=255)
   aGCAAGGACCTTTTTTATAAACAAAAAAACCCGAc                                 >  1:8630908/1‑35 (MQ=255)
   aGCAAGGACCTTTTTTATAAACAAAAAAACCCGAc                                 <  1:5535465/35‑1 (MQ=255)
    gCAAGGACCTTTTTTATAAACAAAAAAACCCGACt                                >  1:9538989/1‑35 (MQ=255)
    gCAAGGACCTTTTTTATAAACAAAAAAACCCGACt                                >  1:16658512/1‑35 (MQ=255)
     cAAGGACCTTTTTTATAAACAAAAAAACCCGACtt                               >  1:12731249/1‑35 (MQ=255)
     cAAGGACCTTTTTTATAAACAAAAAAACCCGACtt                               <  1:14978480/35‑1 (MQ=255)
     cAAGGACCTTTTTTATAAACAAAAAAACCCGACtt                               <  1:19695462/35‑1 (MQ=255)
     cAAGGACCTTTTTTATAAACAAAAAAACCCGACtt                               <  1:8235653/35‑1 (MQ=255)
     cAAGGACCTTTTTTATAAACAAAAAAACCCGACtt                               >  1:9559574/1‑35 (MQ=255)
      aaGGACCTTTTTTATAAACAAAAAAACCCGACTTc                              >  1:19059787/1‑35 (MQ=255)
       aGGACCTTTTTTATAAACAAAAAAACCCGACTTCa                             >  1:3455872/1‑35 (MQ=255)
       aGGACCTTTTTTATAAACAAAAAAACCCGACTTCa                             <  1:6706915/35‑1 (MQ=255)
       aGGACCTTTTTTATAAACAAAAAAACCCGACTTCa                             <  1:9823799/35‑1 (MQ=255)
       aGGACCTTTTTTATAAACAAAAAAACCCGACTTCa                             >  1:11819908/1‑35 (MQ=255)
        ggACCTTTTTTATAAACAAAAAAACCCGACTTCAc                            >  1:18102453/1‑35 (MQ=255)
        ggACCTTTTTTATAAACAAAAAAACCCGACTTCAc                            >  1:13449010/1‑35 (MQ=255)
        ggACCTTTTTTATAAACAAAAAAACCCGACTTCAc                            >  1:20570377/1‑35 (MQ=255)
        ggACCTTTTTTATAAACAAAAAAACCCGACTTCAc                            <  1:2809339/35‑1 (MQ=255)
         gACCTTTTTTATAAACAAAAAAACCCGACTTCAcc                           >  1:6989366/1‑35 (MQ=255)
          aCCTTTTTTATAAACAAAAAAACCCGACTTCACCa                          >  1:9022279/1‑35 (MQ=255)
          aCCTTTTTTATAAACAAAAAAACCCGACTTCACCa                          >  1:10610629/1‑35 (MQ=255)
           ccTTTTTTATAAACAAAAAAACCCGACTTCACCAg                         <  1:17130246/35‑1 (MQ=255)
           ccTTTTTTATAAACAAAAAAACCCGACTTCACCAg                         <  1:18016988/35‑1 (MQ=255)
           ccTTTTTTATAAACAAAAAAACCCGACTTCACCAg                         <  1:2242825/35‑1 (MQ=255)
           ccTTTTTTATAAACAAAAAAACCCGACTTCACCAg                         >  1:15276421/1‑35 (MQ=255)
           ccTTTTTTATAAACAAAAAAACCCGACTTCACCAg                         <  1:7084053/35‑1 (MQ=255)
            cTTTTTTATAAACAAAAAAACCCGACTTCACCAGt                        <  1:12568397/35‑1 (MQ=255)
            cTTTTTTATAAACAAAAAAACCCGACTTCACCAGt                        >  1:6809310/1‑35 (MQ=255)
             ttttttATAAACAAAAAAACCCGACTTCACCAGTa                       >  1:15605138/1‑35 (MQ=255)
             ttttttATAAACAAAAAAACCCGACTTCACCAGTa                       >  1:16382661/1‑35 (MQ=255)
             ttttttATAAACAAAAAAACCCGACTTCACCAGTa                       <  1:10908326/35‑1 (MQ=255)
              tttttATAAACAAAAAAACCCGACTTCACCAGTAt                      >  1:15131720/1‑35 (MQ=255)
              tttttATAAACAAAAAAACCCGACTTCACCAGTAt                      >  1:1552177/1‑35 (MQ=255)
              tttttATAAACAAAAAAACCCGACTTCACCAGTAt                      <  1:3078554/35‑1 (MQ=255)
               ttttATAAACAAAAAAACCCGACTTCACCAGTAtt                     >  1:18217038/1‑35 (MQ=255)
               ttttATAAACAAAAAAACCCGACTTCACCAGTAtt                     <  1:17941387/35‑1 (MQ=255)
                 ttATAAACAAAAAAACCCGACTTCACCAGTATtct                   >  1:4595460/1‑35 (MQ=255)
                  tataAACAAAAAAACCCGACTTCACCAGTATtctc                  <  1:11926430/35‑1 (MQ=255)
                   ataAACAAAAAAACCCGACTTCACCAGTATTctct                 <  1:12139920/35‑1 (MQ=255)
                   ataAACAAAAAAACCCGACTTCACCAGTATTctct                 <  1:10170073/35‑1 (MQ=255)
                   ataAACAAAAAAACCCGACTTCACCAGTATTctct                 <  1:15896325/35‑1 (MQ=255)
                   ataAACAAAAAAACCCGACTTCACCAGTATTctct                 <  1:14508298/35‑1 (MQ=255)
                   ataAAAAAAAAAACCCcgacacacatgcaataatg                 <  1:7938921‑M1/35‑20 (MQ=255)
                   ataAAAAAAAAAACCCcgacacacatgcaataatc                 <  1:6271351‑M1/35‑20 (MQ=255)
                    taAACAAAAAAACCCcgacacacatgcaataatca                <  1:1792088‑M1/35‑21 (MQ=255)
                    taAACAAAAAAACCCGACTTCACCAGTATTCTCTg                >  1:602708/1‑35 (MQ=255)
                    taAACAAAAAAACCCGACTTCACCAGTATTCTCTg                >  1:12449019/1‑35 (MQ=255)
                    taAACAAAAAAACCCGACTTCACCAGTATTCTCTg                <  1:11991267/35‑1 (MQ=255)
                    taAACAAAAAAACCCGACTTCACCAGTATTCTCTg                >  1:9162236/1‑35 (MQ=255)
                    aaaacAAAAAACCCCcgacacacatgcaataatca                <  1:8085933‑M1/34‑21 (MQ=255)
                    aaaaaAAAAAAACCCcgacacacatgcaataatca                <  1:17303108‑M1/34‑21 (MQ=255)
                     aaaCAAAAAAACCCGACTTCACCAGTATTCTCTgg               >  1:14945987/1‑35 (MQ=255)
                     aaaCAAAAAAACCCGACTTCACCAGTATTCTCTgg               >  1:2613814/1‑35 (MQ=255)
                     aaaCAAAAAAACCCGACTTCACCAGTATTCTCTgg               >  1:5151102/1‑35 (MQ=255)
                     aaaCAAAAAAACCCGACTTCACCAGTATTCTCTgg               <  1:15856029/35‑1 (MQ=255)
                      aaaaaaaaaaccccgacacacatgcaataatcatt              <  1:5507627‑M1/32‑23 (MQ=255)
                      aaCAAAAAAACCCGACTTCACCAGTATTCTCTGGt              >  1:2794049/1‑35 (MQ=255)
                       aCAAAAAAACCCcgacacacatgcaataatcattc             <  1:852554‑M1/35‑24 (MQ=255)
                       aCAAAAAAACCCGACTTCACCAGTATTCTCTGGtt             <  1:10507294/35‑1 (MQ=255)
                       aCAAAAAAACCCGACTTCACCAGTATTCTCTGGtt             >  1:15694428/1‑35 (MQ=255)
                       aCAAAAAAACCCGACTTCACCAGTATTCTCTGGtt             >  1:8257144/1‑35 (MQ=255)
                       aCAAAAAAACCCGACTTCACCAGTATTATCTGGtt             <  1:7020603/35‑1 (MQ=255)
                        cAAAAAAACCCcgacacacatgcaataatcattca            <  1:16934027‑M1/35‑25 (MQ=255)
                        cAAAAAAACCCGACTTCACCAGTATTCTCTGGTTa            <  1:14640945/35‑1 (MQ=255)
                        cAAAAAAACCCGACTTCACCAGTATTCTCTGGTTa            >  1:13077880/1‑35 (MQ=255)
                         caaaaaaaCCcgacacacatgcaataatcattcaa           <  1:6887899‑M1/34‑26 (MQ=255)
                         aaaaaaaCCCcgacacacatgcaataatcattcaa           <  1:12527847‑M1/35‑26 (MQ=255)
                         aaaaaaaCCCcgacacacatgcaataatcattcaa           <  1:5349149‑M1/35‑26 (MQ=255)
                         aaaaaaaCCCGACTTCACCAGTATTCTCTGGTTAt           <  1:755350/35‑1 (MQ=255)
                         aaaaaaaCCCGACTTCACCAGTATTCTCTGGTTAt           <  1:4167401/35‑1 (MQ=255)
                         aaaaaaaCCCGACTTCACCAGTATTCTCTGGTTAt           >  1:16319707/1‑35 (MQ=255)
                         aaaaaaaCCCGACTTCACCAGTATTCTCTGGTTAt           <  1:6595772/35‑1 (MQ=255)
                          aaaaaaCCCcgacacacatgcaataatcattcaat          <  1:17039061‑M1/35‑27 (MQ=255)
                           aaaaaCCCcgacacacatgcaataatcattcaata         <  1:15281719‑M1/35‑28 (MQ=255)
                           aaaaaCCCGACTTCACCAGTATTCTCTGGTTATGt         <  1:12882320/35‑1 (MQ=255)
                           aaaaaCCCGACTTCACCAGTATTCTCTGGTTATGt         >  1:13444986/1‑35 (MQ=255)
                           aaaaaCCCGACTTCACCAGTATTCTCTGGTTATGt         <  1:19967094/35‑1 (MQ=255)
                            aaaaCCCGACTTCACCAGTATTCTCTGGTTATGTc        <  1:13147553/35‑1 (MQ=255)
                            aaaaCCCGACTTCACCAGTATTCTCTGGTTATGTc        <  1:19138304/35‑1 (MQ=255)
                              aaCCCcgacacacatgcaataatcattcaataaaa      <  1:2599450‑M1/35‑31 (MQ=255)
                              aaCCCGACTTCACCAGTATTCTCTGGTTATGTCAg      <  1:13115955/35‑1 (MQ=255)
                              aaCCCGACTTCACCAGTATTCTCTGGTTATGTCAg      >  1:7719553/1‑35 (MQ=255)
                              aaCCCGACTTCACCAGTATTCTCTGGTTATGTCAg      >  1:622250/1‑35 (MQ=255)
                               aCCCcgacacacatgcaataatcattcaataaaaa     <  1:10019203‑M1/35‑32 (MQ=255)
                               aCCCGACTTCACCAGTATTCTCTGGTTATGTCAgg     >  1:2917506/1‑35 (MQ=255)
                               aCCCGACTTCACCAGTATTCTCTGGTTATGTCAgg     <  1:4500975/35‑1 (MQ=255)
                               aCCCGACTTCACCAGTATTCTCTGGTTATGTCAgg     >  1:11368766/1‑35 (MQ=255)
                                cccGACTTCACCAGTATTCTCTGGTTATGTCAggg    >  1:4235980/1‑34 (MQ=255)
                                 cccgacacacatgcaataatcattcaataaaaagc   <  1:1034588‑M1/35‑34 (MQ=255)
                                 ccGACTTCATAAGTATTCTCTGGTTATGTCAGGtt   <  1:9246825/35‑1 (MQ=37)
                                  ccgacacacatgcaataatcattcaataaaaagcc  >  1:10710946‑M1/1‑1 (MQ=255)
                                  ccgacacacatgcaataatcattcaataaaaagcc  >  1:4120149‑M1/1‑1 (MQ=255)
                                  ccgacacacatgcaataatcattcaataaaaagcc  <  1:17180400‑M1/35‑35 (MQ=255)
                                  ccgacacacatgcaataatcattcaataaaaagcc  >  1:15502185‑M1/1‑1 (MQ=255)
                                  cGACTTCACCAGTATTCTCTGGTTATGTCAGGttt  >  1:3306683/1‑35 (MQ=255)
                                  cGACTTCACCAGTATTCTCTGGTTATGTCAGGttt  <  1:11374924/35‑1 (MQ=255)
                                  |                                  
CATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT  >  REL606/3866932‑3867000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.