New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1822767 =84 (0.820)11 (0.140) 3/38 NT 13.7% coding (1422/1962 nt) topB DNA topoisomerase III
?REL606 = 2900727 72 (0.890)coding (86/771 nt) yqeC hypothetical protein

Only 100 of 147 total aligned reads displayed.

GGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTG  >  REL606/1822733‑1822801
                                  |                                  
gggTTTGCCGCTCTACCACTTCACCTTTTTcacac                                    <  1:9915609/35‑1 (MQ=255)
gggTTTGCCGCTCTACCACTTCACCTTTTTcacac                                    >  1:19390124/1‑35 (MQ=255)
gggTTTGCCGCTCTACCACTTCACCTTTTTcacac                                    >  1:19885415/1‑35 (MQ=255)
gggTTTGCCGCTCTACCACTTCACCTTTTTcacac                                    >  1:11198378/1‑35 (MQ=255)
gggTTTGCCGCTCTACCACTTCACCTTTTTcacac                                    <  1:15836779/35‑1 (MQ=255)
gctcccagccaaaaaagcaagctggttttcccccc                                    >  1:13354295‑M1/35‑35 (MQ=255)
 ggTTTGCCGCTCTACCACTTCACCTTTTTcacaca                                   >  1:281026/1‑35 (MQ=255)
  gTTTGCCGCTCTACCACTTCACCTTTTTCACACAg                                  <  1:20285454/35‑1 (MQ=255)
  gTTTGCCGCTCTACCACTTCACCTTTTTCACACAg                                  >  1:2083824/1‑35 (MQ=255)
  gTTTGCCGCTCTACCACTTCACCTTTTTCACACAg                                  >  1:3226282/1‑35 (MQ=255)
  gTTTGCCGCTCTACCACTTCACCTTTTTCACACAg                                  >  1:15431733/1‑35 (MQ=255)
  gTTTGCCGCTCTACCACTTCACCTTTTTCACACAg                                  <  1:14502809/35‑1 (MQ=255)
  gTTTGCCGCTCTACCACTTCACCTTTTTCACACAg                                  <  1:4049122/35‑1 (MQ=255)
   tttGCCGCTCTACCACTTCACCTTTTTCACACAGc                                 <  1:6828108/35‑1 (MQ=255)
   tttGCCGCTCTACCACTTCACCTTTTTCACACAGc                                 >  1:3671220/1‑35 (MQ=255)
   tttGCCGCTCTACCACTTCACCTTTTTCACACAGc                                 >  1:9671918/1‑35 (MQ=255)
   tttGCCGCTCTACCACTTCACCTTTTTCACACAGc                                 >  1:12698293/1‑35 (MQ=255)
   tttGCCGCTCTACCACTTCACCTTTTTCACACAGc                                 >  1:6269282/1‑35 (MQ=255)
   tttGCCGCTCTACAACTTCACCTTTTTCACACAGc                                 <  1:13711773/35‑1 (MQ=255)
    ttGCCGCTCTACCACTTCACCTTTTTCACACAGCa                                >  1:20259482/1‑35 (MQ=255)
    ttGCCGCTCTACCACTTCACCTTTTTCACACAGCa                                >  1:3951763/1‑35 (MQ=255)
    ccagccaaaaaagcaagctggttttcccccCAGCa                                <  1:854092‑M1/5‑1 (MQ=255)
    ccagccaaaaaagcaagctggttttcccccCAGCa                                >  1:5307588‑M1/31‑35 (MQ=255)
    ccagccaaaaaagcaagctggttttcccccCAGCa                                <  1:17503518‑M1/5‑1 (MQ=255)
    ccagccaaaaaagcaagctggttttcccccCAGCa                                <  1:20134874‑M1/5‑1 (MQ=255)
     tGCCGCTCTACCACTTCACCTTTTTGACACAGCaa                               <  1:7690861/35‑1 (MQ=255)
     tGCCGCTCTACCACTTCACCTTTTTCACACAGCaa                               >  1:1816647/1‑35 (MQ=255)
     tGCCGCTCTACCACTTCACCTTTTTCACACAGCaa                               >  1:1845662/1‑35 (MQ=255)
     tGCCGCTCTACCACTTCACCTTTTTCACACAGCaa                               >  1:15527061/1‑35 (MQ=255)
     tGCCGCTCTACCACTTCACCTTTTTCACACAGCaa                               <  1:17521939/35‑1 (MQ=255)
     tGCCGCTCTACCACTTCACCTTTTTCACACAGCaa                               <  1:7464333/35‑1 (MQ=255)
      gCCGCTCTACCACTTCACCTTTTTCACACAGCAAc                              >  1:18358976/1‑35 (MQ=255)
      gCCGCTCTACCACTTCACCTTTTTCACACAGCAAc                              >  1:18661430/1‑35 (MQ=255)
       cccctctCCCACTTCACCTTTTTCACACAGCAACt                             <  1:589856/32‑1 (MQ=25)
       ccGCTCTACCACTTCACCTTTTTCACACATCAACt                             >  1:13805745/1‑35 (MQ=255)
       ccGCTCTACCACTTCACCTTTTTCACACAGCAACt                             >  1:12847536/1‑35 (MQ=255)
       ccGCTCTACCACTTCACCTTTTTCACACAGCAACt                             >  1:1301940/1‑35 (MQ=255)
        cGCTCTACCACTTCACCTTTTTCACACAGCAACTc                            <  1:7294816/35‑1 (MQ=255)
        cGCTCTACCACTTCACCTTTTTCACACAGCAACTc                            >  1:13977686/1‑35 (MQ=255)
         gCTCTACCACTTCACCTTTTTCACACAGCAACTCa                           >  1:8535409/1‑35 (MQ=255)
         gCTCTACCACTTCACCTTTTTCACACAGCAACTCa                           >  1:15158854/1‑35 (MQ=255)
         gCTCTACCACTTCACCTTTTTCACACAGCAACTCa                           >  1:5099900/1‑35 (MQ=255)
         gCTCTACCACTTCACCTTTTTCACACAGCAACTCa                           >  1:19283471/1‑35 (MQ=255)
          ctctACCACTTCACCTTTTTCACACAGCAACTCAt                          >  1:15988812/1‑35 (MQ=255)
          ctctACCACTTCACCTTTTTCACACAGCAACTCAt                          >  1:7688181/1‑35 (MQ=255)
          ctctACCACTTCACCTTTTTCACACAGCAACTCAt                          >  1:4858983/1‑35 (MQ=255)
           tctACCACTTCACCTTTTTCACACAGCAACTCATc                         <  1:10273874/35‑1 (MQ=255)
            ctACCACTTCACCTTTTTCCCACAGCAACTCATCg                        <  1:11381037/35‑1 (MQ=255)
            ctACCACTTCACCTTTTTCACACAGCAACTCATCg                        <  1:4671742/35‑1 (MQ=255)
            ctACCACTTCACCTTTTTCACACAGCAACTCATCg                        >  1:16234773/1‑35 (MQ=255)
             tACCACTTCACCTTTTTCACACAGCAACTCATCGc                       <  1:11308954/35‑1 (MQ=255)
             tACCACTTCACCTTTTTCACACAGCAACTCATCGc                       >  1:20349490/1‑35 (MQ=255)
              cccACTTCCCCTTTTTCACACAGCAACTCATCGcc                      <  1:15236061/34‑1 (MQ=255)
               ncACTTCACCTTTTTCACACAGCAACTCATCGCCt                     >  1:19537651/2‑35 (MQ=255)
               ccACTTCACCTTTTTCACACAGCAACTCATCGCCt                     >  1:5879213/1‑35 (MQ=255)
               ccACTTCACCTTTTTCACACAGCAACTCATCGCCt                     >  1:7827131/1‑35 (MQ=255)
                cACTTCACCTTTTTCACACAGCAACTCATCGCCtt                    <  1:739965/35‑1 (MQ=255)
                cACTTCACCTTTTTCACACAGCAACTCATCGCCtt                    <  1:16302025/35‑1 (MQ=255)
                cACTTCACCTTTTTCACACAGCAACTCATCGCCtt                    >  1:2598155/1‑35 (MQ=255)
                 aCTTCACCTTTTTCACACAGCAACTCATCGCCttt                   >  1:13345142/1‑35 (MQ=255)
                 aCTTCACCTTTTTCACACAGCAACTCATCGCCttt                   >  1:14347333/1‑35 (MQ=255)
                  cTTCCCCTTTTTCACACAGCAACTCATCGCCTTTc                  <  1:4972713/35‑1 (MQ=255)
                  cTTCCCCTTTTCCCCCCAGCAACTCATCGCCTTTc                  <  1:4282732/35‑1 (MQ=19)
                  cTTCACCTTTTTCACACAGCAACTCATCGCCttta                  >  1:17617024/1‑34 (MQ=255)
                  cTTCACCTTTTTCACACAGCAACTCATCGCCTTTc                  >  1:15853463/1‑35 (MQ=255)
                  cTTCACCTTTTTCACACAGCAACTCATCGCCTTTc                  >  1:1961271/1‑35 (MQ=255)
                   ttCACCTTTTTCACACAGCAACTCATCGCCTTTCg                 >  1:10767302/1‑35 (MQ=255)
                    tccccTTTTTCACACAGCAACTCATCGCCTTTCGc                <  1:2229783/32‑1 (MQ=255)
                    tCACCTTTTTCACACAGCAACTCATCGCCTTTCGc                >  1:14473734/1‑35 (MQ=255)
                    tCACCTTTTTCACACAGCAACTCATCGCCTTTCGc                >  1:15542653/1‑35 (MQ=255)
                    tCACCTTTTTCACACAGCAACTCATCGCCTTTCGc                >  1:9173706/1‑35 (MQ=255)
                    tCACCTTTTTCACACAGCAACTCATCGCCTTTCGc                >  1:2660008/1‑35 (MQ=255)
                    tCACCTTTTTCACACAGCAACTCATCGCCTTTCGc                >  1:12752258/1‑35 (MQ=255)
                     ccccTTTTTCACACAGCAACTCATCGCATTTCGcc               <  1:3720794/33‑1 (MQ=38)
                     cACCTTTTTCACACAGCAACTCATCGCCTTTCGcc               >  1:2012521/1‑35 (MQ=255)
                     cACCTTTTTCACACAGCAACTCATCGCCTTTCGcc               >  1:11500568/1‑35 (MQ=255)
                     cACCTTTTTCACACAGCAACTCATCGCCTTTCGcc               >  1:10398370/1‑35 (MQ=255)
                      cccTTTTTCACACAGCAACTCATCGCCTTTCGcca              <  1:5173646/34‑1 (MQ=255)
                      aCCTTTTTCACACAGCAACTCATCGCCTTTCGcca              >  1:2477240/1‑35 (MQ=255)
                       ctttttcccccCAGCAACTCATCGCCTTTCGccac             >  1:16198305‑M1/12‑35 (MQ=255)
                        cttttcccccCAGCAACTCATCGCCTTTCGccacc            >  1:1851664‑M1/11‑35 (MQ=255)
                        cttttcccccCAGCAACTCATCGCCTTTCGccacc            >  1:15097909‑M1/11‑35 (MQ=255)
                        cTTTTTCACACAGCAACTCATCGCCTTTCGccacc            >  1:18741020/1‑35 (MQ=255)
                         tttttCACACAGCAACTCATCGCCTTTCGccacca           >  1:13270219/1‑35 (MQ=255)
                         ttttcccccCAGCAACTCATCGCCTTTCGccacca           >  1:9265414‑M1/10‑35 (MQ=255)
                         ttttcccccCAGCAACTCATCGCCTTTCGccacca           >  1:18405528‑M1/10‑35 (MQ=255)
                          ttttCACACAGCAACTCATCGCCTTTCGCcaccac          >  1:13151852/1‑35 (MQ=255)
                           tttCACACAGCAACTCATCGCCTTTCGCCACcaca         >  1:16121627/1‑35 (MQ=255)
                            ttCACACAGCAACTCATCGCCTTTCGCCACCACAg        >  1:5476026/1‑35 (MQ=255)
                            tccccgCAGCAACTCATCGCCTTTCGCCACCACAg        >  1:12001901‑M1/7‑35 (MQ=255)
                            tcccccCAGCAACTCATCGCCTTTCGCCACCACAg        >  1:8194129‑M1/7‑35 (MQ=255)
                             tCACACAGCAACTCATCGCCTTTCGCCACCACAgg       >  1:12634451/1‑35 (MQ=255)
                             cccccCAGCAACTCATCGCCTTTCGACACCACAgg       >  1:7024687‑M1/6‑35 (MQ=255)
                              ccccCAGCAACTCATCGCCTTTCGCCACCACAGGc      >  1:661719‑M1/5‑35 (MQ=255)
                               acacaGCAACTCATCGCCTTTCGCCACCACAGGCa     >  1:7969852/1‑35 (MQ=255)
                                ccCAGCAACTCATCGCCTTTCGCCACCACAGGCAg    >  1:827183‑M1/3‑35 (MQ=255)
                                 acaGCAACTCATCGCCTTTCGCCACCACAGGCAg  >  1:990757/1‑34 (MQ=255)
                                 acaGCAACTCATCGCCTTTCGCCACCACAGGCAGt   >  1:10954332/1‑35 (MQ=255)
                                  CAGCAACTCATCGCCTTTCGCCACCACAGGcaggg  <  1:5197098‑M1/35‑3 (MQ=255)
                                  CAGCAACTCATCGCCTTTCGCCACCACAGGCAGTg  >  1:9602157‑M1/1‑35 (MQ=255)
                                  |                                  
GGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTG  >  REL606/1822733‑1822801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.