Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,776,434 IS150 (–) +4 bp 56.9% intergenic (‑225/+56) pheS ← / ← pheM phenylalanyl‑tRNA synthetase alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1776434 =33 (0.390)48 (0.470) 28/48 NT 54.8% intergenic (‑225/+59) pheS/pheM phenylalanyl‑tRNA synthetase alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 177643733 (0.390)39 (0.380) 21/48 NT 49.6% intergenic (‑228/+56) pheS/pheM phenylalanyl‑tRNA synthetase alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

AGAAACGGAAAACAGCGCCTGAAAGCCTCCCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1776467‑1776434
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATG  <  REL606/2775877‑2775845
                                                                   
AGAAACGGAAAACAGCGCCTGAAAGCCTCCCAGTT                                  >  1:3499410/1‑35
AGAAACGGAAAACAGCGCCTGAAAGCCTCCCAGTT                                  >  1:13382987/1‑35
 GAAACGGAAAACAGCGCCTGAAAGCCTCCCAGTTG                                 >  1:7770015/1‑35
   AACGGAAAACAGCGCCTGAAAGCCTCCCAGTTGTA                               >  1:1008219/1‑35
    ACGGAAAACAGCGCCTGAAAGCCTCCCAGTTGTAC                              >  1:13886275/1‑35
     CGGAAAACAGCGCCTGAAAGCCTCCCAGTTGTACT                             >  1:4107304/1‑35
       GAAAACAGCGCCTGAAAGCCTCCCAGTTGTACTGC                           >  1:20014316/1‑35
        AAAACAGCGCCTGAAAGCCTCCCAGTTGTACTGCA                          >  1:16349392/1‑35
         aacCAGCGCCTGAAAGCCTCCCAGTTGTACTGCAC                         <  1:11451836/32‑1
         AAACAGCGCCTGAAAGCCTCCCAGTTGTACTGCAC                         >  1:11572961/1‑35
         AAACAGCGCCTGAAAGCCTCCCAGTTGTACTGCAC                         >  1:659176/1‑35
         AAACAGCGCCTGAAAGCCTCCCAGTTGTACTGCAC                         >  1:10104064/1‑35
          ccCAGCGCCTGAAAGCCTCCCAGTTGTACTGCACC                        <  1:8014551/33‑1
          AACAGCGCCTGAAAGCCTCCCAGTTGTACTGCACC                        >  1:5921708/1‑35
           ACAGCGCCTGAAAGCCTCCCAGTTGTACTGCACCC                       >  1:7125492/1‑35
            CAGCGCCTGAAAGCCTCCCAGTTGTACTGCACCCA                      <  1:12710659/35‑1
             agaGCCTGAAAGCCTCCCAGTTGTACTGCACCCAT                     <  1:13210495/32‑1
             agaGCCTGAAAGCCTCCCAGTTGTACTGCACCCAT                     <  1:10810237/32‑1
             AGCGCCTGAAAGCCTCCCAGTTGTACTGCACCCAT                     <  1:8819443/35‑1
             AGCGCCTGAAAGCCTCCCAGTTGTACTGCACCCAT                     >  1:9109227/1‑35
               CGCCTGAAAGCCTCCCAGTTGTACTGCACCCATTT                   <  1:16843045/35‑1
               CGCCTGAAAGCCTCCCAGTTGTACTGCACCCATTT                   >  1:468877/1‑35
               CGCCTGAAAGCCTCCCAGTTGTACTGCACCAATTT                   <  1:10434124/35‑1
                GCCTGAAAGCCTCCCAGTTGTACTGCACCCATTTT                  >  1:9690188/1‑35
                GCCTGAAAGCCTCCCAGTTGTACTGCACCCATTTT                  <  1:12949700/35‑1
                 CCTGAAAGCCTCCCAGTTGTACTGCACCCATTTTG                 <  1:16379508/35‑1
                  CTGAAAGCCTCCCAGTTGTACTGCACCCATTTTGT                >  1:17280777/1‑35
                  CTGAAAGCCTCCCAGTTGTACTGCACCCATTTTGT                >  1:20185684/1‑35
                  CTGAAAGCCTCCCAGTTGTACTGCACCCATTTTGT                >  1:6182024/1‑35
                   TGAAAGCCTCCCAGTTGTACTGCACCCATTTTGTT               <  1:5342613/35‑1
                   TGAAAGCCTCCCAGTTGTACTGCACCCATTTTGTT               <  1:2657914/35‑1
                   TGAAAGCCTCCCAGTTGTACTGCACCCATTTTGTT               >  1:2040510/1‑35
                   TGAAAGCCTCCCAGTTGTACTGCACCCATTTTGTT               >  1:7639501/1‑35
                   TGAAAGCCTCCCAGTTGTACTGCACCCATTTTGTT               <  1:1546505/35‑1
                    GAAAGCCTCCCAGTTGTACTGCACCCATTTTGTTG              >  1:5409188/1‑35
                    GAAAGCCTACCAGTTGTACTGCACCCATTTTGTTG              <  1:3100739/35‑1
                      AAGCCTCCCAGTTGTACTGCACCCATTTTGTTGGA            >  1:20212648/1‑35
                      AAGCCTCCCAGTTGTACTGCACCCATTTTGTTGGA            <  1:913584/35‑1
                      AAGCCTCCCAGTTGTACTGCACCCATTTTGTTGGA            >  1:11142578/1‑35
                      AAGCCTCCCAGTTGTACTGCACCCATTTTGTTGGA            <  1:12015480/35‑1
                      AAGCCTCCCAGTTGTACTGCACCCATTTTGTTGGA            >  1:3814220/1‑35
                       AGCCTCCCAGTTGTACTGCACCCATTTTGTTGGAC           >  1:11854333/1‑35
                       AGCCTCCCAGTTGTACTGCACCCATTTTGTTGGAC           >  1:1654441/1‑35
                        GCCTCCCAGTTGTACTGCACCCATTTTGTTGGACG          <  1:10999161/35‑1
                        GCCTCCCAGTTGTACTGCACCCATTTTGTTGGACG          <  1:15298498/35‑1
                        GCCTCCCAGTTGTACTGCACCCATTTTGTTGGACG          <  1:19418512/35‑1
                        GCCTCCCAGTTGTACTGCACCCATTTTGTTGGACG          <  1:18670360/35‑1
                         CCTCCCAGTTGTACTGCACCCATTTTGTTGGACGA         <  1:3966370/35‑1
                         CCTCCCAGTTGTACTGCACCCATTTTGTTGGACGA         >  1:4284606/1‑35
                         CCTCCCAGTTGTACTGCACCCATTTTGTTGGACGA         <  1:9345312/35‑1
                           TCCCAGTTGTACTGCACCCATTTTGTTGGACGATG       <  1:15477130/35‑1
                           TCCCAGTTGTACTGCACCCATTTTGTTGGACGATG       >  1:8575115/1‑35
                            CCCAGTTGTACTGCACCCATTTTGTTGGACGATGA      >  1:3613682/1‑35
                             CCAGTTGTACTGCACCCATTTTGTTGGACGATGAA     >  1:9541214/1‑35
                              CAGTTGTACTGCACCCATTTTGTTGGACGATGAAA    >  1:3946520/1‑35
                              CAGTTGTACTGCACCCATTTTGTTGGACGATGAAA    >  1:13709553/1‑35
                               AGTTGTACTGCACCCATTTTGTTGGACGATGAAAT   >  1:9566091/1‑35
                               AGTTGTACTGCACCCATTTTGTTGGACGATGAAAT   >  1:20425139/1‑35
                               AGTTGTACTGCACCCATTTTGTTGGACGATGAAAT   >  1:3467691/1‑35
                               AGTTGTACTGCACCCATTTTGTTGGACGATGAAAT   >  1:13334248/1‑35
                               AGTTGTACTGCACCCATTTTGTTGGACGATGAAAT   <  1:1428854/35‑1
                               AGTTGTACTGCACCCATTTTGTTGGACGATGAAAT   >  1:6087214/1‑35
                                GTTGTACTGCACCCATTTTGTTGGACGATGAAATG  <  1:8270235/35‑1
                                GTTGTACTGCACCCATTTTGTTGGACGATGAAATG  >  1:2241857/1‑35
                                GTTGTACTGCACCCATTTTGTTGGACGATGAAATG  >  1:145136/1‑35
                                GTTGTACTGCACCCATTTTGTTGGACGATGAAATG  >  1:14793235/1‑35
                                GTTGTACTGCACCCATTTTGTTGGACGATGAAATG  <  1:3841997/35‑1
                                GTTGTACTGCACCCATTTTGTTGGACGATGAAATG  <  1:978435/35‑1
                                GTTGTACTGCACCCATTTTGTTGGACGATCAAATG  >  1:15488037/1‑35
                                                                   
AGAAACGGAAAACAGCGCCTGAAAGCCTCCCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1776467‑1776434
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATG  <  REL606/2775877‑2775845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.