New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 640115 =106 (1.030)28 (0.380) 5/34 NT 24.6% intergenic (+33/+22) cspE/ccrB cold shock protein E/camphor resistance protein CrcB
?REL606 2746531 = 97 (1.330)coding (671/873 nt) hypB GTP hydrolase involved in nickel liganding into hydrogenases

Only 100 of 272 total aligned reads displayed.

AAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTT  >  REL606/640081‑640149
                                  |                                   
atcagcgaggcggcggcaaacatatgcggatattt                                     <  1:8133779‑M1/1‑1 (MQ=255)
atcagcgaggcggcggcaaacatatgcggatattt                                     <  1:3808837‑M1/1‑1 (MQ=255)
atcagcgaggcggcggcaaacatatgcggatattt                                     >  1:18105474‑M1/35‑35 (MQ=255)
atcagcgaggcggcggcaaacatatgcggatattt                                     >  1:13047306‑M1/35‑35 (MQ=255)
 aGATACGTCAGCAAGAATTCAAAACCCGCTTAATc                                    >  1:10102690/1‑35 (MQ=255)
 aGATACGTCAGCAAGAATTCAAAACCCGCTTAATc                                    <  1:13567678/35‑1 (MQ=255)
 aGATACGTCAGCAAGAATTCAAAACCCGCTTAATc                                    <  1:12433079/35‑1 (MQ=255)
  gATACGTCAGCAAGAATTCAAAACCCGCTTAATCa                                   <  1:18704850/35‑1 (MQ=255)
  gATACGTCAGCAAGAATTCAAAACCCGCTTAATCa                                   <  1:5092554/35‑1 (MQ=255)
  gATACGTCAGCAAGAATTCAAAACCCGCTTAATCa                                   >  1:2067901/1‑35 (MQ=255)
  gATACGTCAGCAAGAATTCAAAACCCGCTTAATCa                                   <  1:11682551/35‑1 (MQ=255)
  cagggaggcggcggcaaacatatgcggatattTCa                                   >  1:19776058‑M1/33‑35 (MQ=255)
  cagcgaggcggcggcaaacatatgcggatattttc                                   <  1:13323487‑M1/3‑3 (MQ=255)
  cagcgaggcggcggcaaacatatgcggatattTCa                                   >  1:4141922‑M1/33‑35 (MQ=255)
  cagcgaggcggcggcaaacatatgcggatattTCa                                   <  1:3704577‑M1/3‑1 (MQ=255)
  cagcgaggcggcggcaaacatatgcggatattTCa                                   >  1:7138718‑M1/33‑35 (MQ=255)
  cagcgaggcggcggcaaacatatgcggatattTCa                                   <  1:6436837‑M1/3‑1 (MQ=255)
   agcgaggcggcggcaaacatatgcggatattTCAg                                  >  1:15307953‑M1/32‑35 (MQ=255)
   agcgaggcggcggcaaacatatgcggatattTCAg                                  >  1:8692796‑M1/32‑35 (MQ=255)
   aTACGTCAGCAAGAATTCAAAACCCGCTTAATCAg                                  >  1:6953098/1‑35 (MQ=255)
   aTACGTCAGCAAGAATTCAAAACCCGCTTAATCAg                                  <  1:10151038/35‑1 (MQ=255)
    tACGTCAGCAAGAATTCAAAACCCGCTTAATCAGc                                 <  1:20582704/35‑1 (MQ=255)
    tACGTCAGCAAGAATTCAAAACCCGCTTAATCAGc                                 >  1:10326301/1‑35 (MQ=255)
    gcgaggcggcggcaaacatatgcggatattTCAGc                                 <  1:3896212‑M1/5‑1 (MQ=255)
    gcgaggcggcggcaaacatatgcggatattTCAGc                                 >  1:1992585‑M1/31‑35 (MQ=255)
    gcgaggcggcggcaaacatatgcggatataTCAGc                                 >  1:1392522‑M1/31‑35 (MQ=255)
     cgaggcggcggcaaacatatgcggatattTTAGCg                                <  1:5835279‑M1/6‑1 (MQ=255)
     cgaggcggcggcaaacatatgcggatattTCAGCg                                >  1:1794881‑M1/30‑35 (MQ=255)
     cgaggcggcggcaaacatatgcggatattTCAGCg                                >  1:4506052‑M1/30‑35 (MQ=255)
     cgaggcggcggcaaacatatgcggatattTCAGCg                                >  1:3225589‑M1/30‑35 (MQ=255)
      gaggcggcggcaaacatatgcggatattTCAGCgg                               >  1:16052386‑M1/29‑35 (MQ=255)
      gaggcggcggcaaacatatgcggatattTCAGCgg                               >  1:17040267‑M1/29‑35 (MQ=255)
      cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg                               <  1:16391849/35‑1 (MQ=255)
      cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg                               >  1:7223213/1‑35 (MQ=255)
      cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg                               >  1:9491945/1‑35 (MQ=255)
      cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg                               <  1:11360605/35‑1 (MQ=255)
       gTCAGCAAGAATTCAAAACCCGCTTAATCAGCggg                              <  1:14180358/35‑1 (MQ=255)
       gTCAGCAAGAATTCAAAACCCGCTTAATCAGCggg                              >  1:6767447/1‑35 (MQ=255)
       aggcggcggcaaacatatgcggatattTCAGCggg                              <  1:1508468‑M1/8‑1 (MQ=255)
        tCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt                            <  1:5557492/35‑1 (MQ=255)
         cAGCAAGAATTCAAAACCCGCTTAATCAGCGTGtt                           >  1:247349/1‑35 (MQ=255)
         cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtt                           >  1:19522803/1‑35 (MQ=255)
         cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtt                           >  1:4015802/1‑35 (MQ=255)
         cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtt                           <  1:1732885/35‑1 (MQ=255)
         cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtt                           >  1:7750320/1‑35 (MQ=255)
          aGCAAGAATTCAAAACCAGCTTAATCAGCGGGttt                          <  1:9474020/35‑1 (MQ=255)
           gCAAGAATTCAAAACCCGCTTAATCAGCGGGtttt                         <  1:2602891/35‑1 (MQ=255)
           gCAAGAATTCAAAACCCGCTTAATCAGCGGGtttt                         <  1:2031126/35‑1 (MQ=255)
           ctaaGAATTCAAAACCCGCTTAATCAGCGGGtttt                         <  1:12147515/33‑1 (MQ=255)
            gcggcaaacatatgcggatattTCAGCGGGttttt                        <  1:16216074‑M1/13‑1 (MQ=255)
            cAAGAATTCAAAACCCGCTTAATCAGCGGGttttt                        >  1:15600219/1‑35 (MQ=255)
             cggcaaacatatgcggatattTCAGCGGGtttttt                       <  1:10609030‑M1/14‑1 (MQ=255)
             aaGAATTCAAAACCCGCTTAATCAGCGGGtttttt                       >  1:9395812/1‑35 (MQ=255)
              aGAATTCAAAACCCGCTTAATCAGCGGGttttttt                      <  1:1112012/35‑1 (MQ=255)
              aGAATTCAAAACCCGCTTAATCAGCGGGttttttt                      <  1:3362113/35‑1 (MQ=255)
               gAATTCAAAACCCGCTTAATCAGCGGGtttttttt                     <  1:9191565/35‑1 (MQ=255)
               gAATTCAAAACCCGCTTAATCAGCGGGtttttttt                     <  1:18727739/35‑1 (MQ=255)
               gAATTCAAAACCCGCTTAATCAGCGGGtttttctt                     >  1:1360201/1‑35 (MQ=255)
                caaacatatgcggatattTCAGCGGgttttttttc                    <  1:15748421‑M1/17‑2 (MQ=255)
                caaacatatgcggatattTCAGCGGGttttttttt                    <  1:8477470‑M1/17‑1 (MQ=255)
                caaacatatgcggatattTCAGCGGGttgtttttt                    <  1:12019483‑M1/17‑1 (MQ=255)
                aaTTCAAAACCCGCTTAATCAGCGGGttttttttt                    >  1:5897836/1‑35 (MQ=255)
                 aaacatatgcggatattTCAGCGGttttttttttc                   <  1:16724227‑M1/18‑2 (MQ=255)
                 aaacatatgcggatattTCAGCGGgttttcttttc                   <  1:16310765‑M1/18‑2 (MQ=255)
                 aTTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTg                   >  1:12225714/1‑35 (MQ=255)
                  ttCAAAACCCGCTTAATCAGCGGGTTTTTTTTTgg                  <  1:9878660/35‑1 (MQ=255)
                  aacatatgcggatattTCAGCgggttttttttccc                  <  1:19852789‑M1/19‑4 (MQ=255)
                  aacatatgcggatattTCAGCgggttttttttatc                  <  1:15676456‑M1/19‑4 (MQ=255)
                   tCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGt                 >  1:16772427/1‑35 (MQ=255)
                    cAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTc                <  1:4760348/35‑1 (MQ=255)
                     aaaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCt               >  1:8035204/1‑35 (MQ=255)
                     aaaaCCCGCTTAATCAGAGGGTTTTTTTTTGGTCt               <  1:7730201/35‑1 (MQ=255)
                      aaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCtt              >  1:3089471/1‑35 (MQ=255)
                      aaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCtt              >  1:13765424/1‑35 (MQ=255)
                      aaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCtt              <  1:19355405/35‑1 (MQ=255)
                       aaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCttt             <  1:5196765/35‑1 (MQ=255)
                       aaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCttt             >  1:5688160/1‑35 (MQ=255)
                       aaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCttt             <  1:5991872/35‑1 (MQ=255)
                       aaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCttt             <  1:901301/35‑1 (MQ=255)
                       aaCCAGCTTAATCAGCGGGTTTTTTTTTGGTCttt             <  1:16453667/35‑1 (MQ=255)
                        aCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTa            <  1:7413941/35‑1 (MQ=255)
                        aCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTa            <  1:8309499/35‑1 (MQ=255)
                          ccGCTTAATCAGCGGGTTTTTTTTTTGGTCTTTAg           <  1:4323104/35‑1 (MQ=25)
                          ccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgt          >  1:14692844/1‑35 (MQ=255)
                          ccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgt          <  1:17693314/35‑1 (MQ=255)
                             cTTAATCAGCGGGTTTTTTTTTGGTCTTTAGtgtg       <  1:1849412/35‑1 (MQ=255)
                             cTTAATCAGCGGGTTTTTTTTTGGTCTTTAGtgtg       <  1:20340953/35‑1 (MQ=255)
                             cTTAATCAGCGGGCTTTTTTTTGGTCTTTAGtgtg       >  1:977164/1‑35 (MQ=255)
                             cTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGc      <  1:20155151/35‑1 (MQ=38)
                              ttAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGc      >  1:1726984/1‑35 (MQ=255)
                               tAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCg     <  1:14482637/35‑1 (MQ=255)
                               tAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCg     <  1:10037311/35‑1 (MQ=255)
                               tAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCg     >  1:7883213/1‑35 (MQ=255)
                                aaTCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCgg    <  1:18816452/35‑1 (MQ=255)
                                aaTCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCgg    <  1:18858603/35‑1 (MQ=255)
                                 aTCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGt   <  1:1281938/35‑1 (MQ=255)
                                  TCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGtt  >  1:17518592‑M1/1‑35 (MQ=255)
                                  TCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGtt  <  1:20018450‑M1/35‑1 (MQ=255)
                                  TCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGtt  <  1:4280730‑M1/35‑1 (MQ=255)
                                  TCAGCGGGTTTTTTTTTGGTCTTTAGCGTGCGGtt  <  1:4985725‑M1/35‑1 (MQ=255)
                                  |                                   
AAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTT  >  REL606/640081‑640149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.