New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2283386 =61 (0.590)10 (0.110) 3/44 NT 11.2% intergenic (‑42/+107) yfaA/gyrA hypothetical protein/DNA gyrase subunit A
?REL606 2645822 = 102 (1.080)coding (151/273 nt) yfiM hypothetical protein

GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2283421‑2283386
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCG  >  REL606/2645822‑2645855
                                                                      
GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCT                                     <  1:6807081/35‑1
GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCT                                     >  1:11961565/1‑35
GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCT                                     <  1:12072617/35‑1
GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCT                                     <  1:5070955/35‑1
GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCT                                     <  1:18668280/35‑1
 CTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG                                    <  1:5344304/35‑1
 CTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG                                    <  1:16539661/35‑1
 CTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG                                    >  1:19619160/1‑35
 CTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG                                    >  1:17295892/1‑35
 CTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG                                    >  1:19304921/1‑35
   TTTGTCGTATTAGGGCACGGTAAAGTTTGGCTGGG                                  >  1:12732516/1‑35
   TTTGTCGTATTAGGGCACGGTAAAGTTTGGCTGGG                                  >  1:14269404/1‑35
    TTGTCGTATTAGGGCACGGTAAAGTTTGGCTGGGG                                 >  1:16613256/1‑35
     TGTCGTATTAGGGCACGGTAAAGTTTGGCTGGGGc                                >  1:9439740/1‑34
      GTCGTATTAGGGCACGGTAAAGTTTGGCTGGGGcg                               >  1:8655983/1‑33
       TCGTATTAGGGCACGGTAAAGTTTGGCTGGGGcgc                              >  1:17847047/1‑32
       TCGTATTAGGGCACGGTAAAGTTTGGCTGGGGccc                              >  1:1656956/1‑32
       TCGTATTAGGGCACGGTAAAGTTTGGCTGGGGGCG                              >  1:17086886/1‑35
       TCGTATTAGGGCACGGTAAAGTTTGGCTGGGGCCG                              >  1:1053734/1‑35
       TCGTATTAGGGCACGGTAAAGTTTGGCTGGGGCCG                              >  1:10468763/1‑35
        CGTATTAGGGCACGGTAAAGTTTGGCTGGGGGCGg                             >  1:18772611/1‑34
        CGTATTAGGGCACGGTAAAGTTTGGCTGGGGCCGg                             >  1:17787904/1‑34
        CGTATTAGGGCACGGTAAAGTTTGGCTGGGGCCGg                             >  1:5725753/1‑34
         GTATTAGGGCACGGTAAAGTTTGGCTGGGGGCGgg                            >  1:8839604/1‑33
          TATTAGGGCACGGTAAAGTTTGGCTGGGGGCGgga                           >  1:14416748/1‑32
            TTAGGGCACGGTAAAGTTTGGCTGGGGGCGTCAAA                         >  1:5977588/1‑35
             TAGGGCACGGTAAAGTTTGGCTGGGGGCGTCAAAA                        >  1:5242168/1‑35
                                  TGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCC   >  1:10501013/1‑35
                                   GGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCG  >  1:6395116/1‑35
                                                                      
GCTTTTGTCGTATTAGGGCACGGTAAAGTTTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2283421‑2283386
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCG  >  REL606/2645822‑2645855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.