New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1286707 =97 (0.940)17 (0.210) 5/38 NT 21.4% intergenic (+31/‑152) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein
?REL606 = 4286236 48 (0.590)coding (386/930 nt) alsK D‑allose kinase

CAACTCACCCCGCACCGTGCCCATAAAAAAACCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1286744‑1286707
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccTTACGCAACAACTGGTTCTGGCGGCCTATCTCGG  <  REL606/4286236‑4286203
                                                                        
CAACTCGCCCCGCACCGTGCCCATAAAAAAACCCC                                       <  1:2918252/35‑1
CAACTCCCCCCGCACCGTGCCCATAAAAAAACCCC                                       <  1:20386352/35‑1
CAACTCACCCCTCACCGTGCCCATAAAAAAACCCC                                       >  1:12397742/1‑35
 AACTCACCCCGCACCGTGCCCATAAAAACACCCCG                                      >  1:11309050/1‑35
 AACTCACCCCGCACCGTGCCCATAAAAAAACCCCG                                      <  1:7985823/35‑1
 AACTCACCCCGCACCGTGCCCATAAAAAAACCCCG                                      >  1:5381239/1‑35
 AACTCACCCCGCACCGTGCCCATAAAAAAACCCCG                                      <  1:11107875/35‑1
  ACTCACCCCGCACCGTGCCCATAAAAAAACCCCGC                                     >  1:8538662/1‑35
  ACTCACCCCGCACCGTGCCCATAAAAAAACCCCGC                                     >  1:7205126/1‑35
  ACTCACCCCGCACCGTGCCCATAAAAAAACCCCGC                                     >  1:6014631/1‑35
  ACTCACCCCGCACCGTGCCCATAAAAAAACCCCGC                                     <  1:16474604/35‑1
  ACTCACCCCGCACCGTGCCCATAAAAAAACCCCGC                                     <  1:14945268/35‑1
   CTCACCCCGCACCGTGCCCATAAAAAAACCCCGCC                                    >  1:18211800/1‑35
                    ccgTAAAAAAACCCCGCCTTACGCAACAACTGGTT                   <  1:12388186/32‑1
                      gTAAAAAAACCCCGCCTTACGCAACAACTGGTTCT                 <  1:970450/34‑1
                       gAAAAAAACCCCGCCTTACGCAACAACTGGTTCTG                <  1:17758393/34‑1
                       aagAAAAACCCCGCCTTACGCAACAACTGGTTCTG                <  1:10246583/32‑1
                       aagAAAAACCCCGCCTTACGCAACAACTGGTTCTG                <  1:13832342/32‑1
                       aAAAAAAACCCCGCCTTACGCAACAACTGGTTCTG                <  1:9088719/34‑1
                       TAAAAAAACCCCGCCTTACGCAACAACTGGTTCTG                <  1:2220813/35‑1
                        agAAAAACCCCGCCTTACGCAACAACTGGTTCTGG               <  1:4366621/33‑1
                        AAAAAAACCCCGCCTTACGCAACAACTGGTTCTGG               <  1:3839295/35‑1
                         gAAAAACCCCGCCTTACGCAACAACTGGTTCTGGC              <  1:9139820/34‑1
                         gAAAAAACCCGCCTTACGCAACAACTGGTTCTGGC              <  1:15758154/34‑1
                         gAAAAAACCCGCCTTACGCAACAACTGGTTCTGGC              <  1:2862930/34‑1
                         AAAAAACCCCGCCTTACGCAACAACTGGTTCTGGC              <  1:6588445/35‑1
                          AAAAACCCCGCCTTACGCAACAACTGGTTCTGGCG             <  1:5177674/35‑1
                          AAAAAACCCGCCTTACGCAACAACTGGTTCTGGCG             <  1:1097387/35‑1
                           AAAACCCCGCCTTGCGCAACAACTGGTTCTGGCGG            <  1:18047797/35‑1
                           AAAACCCCGCCTTACGCAACAACTGGTTCTGGCGG            <  1:7900049/35‑1
                            tAACCCCGCCTTACGCAACAACTGGTTCTGGCGGC           <  1:16954289/34‑1
                             AACCCCGCCTTACGCAACAACTGGTTCTGGCGGCC          <  1:6858154/35‑1
                              ACCCCGCCTTACGCAACAACTGGTTCTGGCGGCCT         <  1:10396277/35‑1
                              ACCCCGCCTTACGCAACAACTGGTTCTGGCGGCCT         <  1:13515374/35‑1
                              ACCCCGCCTTACGCAACAACTGGTTCTGGCGGCCT         <  1:18878622/35‑1
                               CCCCGCCTTACGCAACAACTGGTTCTGGCGGCCTA        <  1:12547507/35‑1
                               CCCCGCCTTACGCAACAACTGGTTCTGGCGGCCTA        <  1:6799146/35‑1
                                 CCGCCTTACGCAACAACTGGTTCTGGCGGGCTATC      >  1:4185554/1‑35
                                 CCGCCTTACGCAACAACTGGTTCTGGCGGCCTATC      <  1:15040646/35‑1
                                 CCGCCTTACGCAACAACTGGTTCTGGCGGCCTATC      <  1:16554/35‑1
                                  CGCCTTACGCAACAACTGGTTCTGGCGGCCTATCT     <  1:4089273/35‑1
                                  CGCCTTACGCAACAACTGGTTCTGGCGGCCTATCT     >  1:12399873/1‑35
                                  CGCCTTACGCAACAACTGGTTCTGGCGGCCTATCT     <  1:12805601/35‑1
                                  CGCCTTACGCAACAACTGGTTCTGGCGGCCTATCT     >  1:11217958/1‑35
                                  CGCCTTACGCAACAACTGGTTCTGGCGGCCTATCN     <  1:11767431/35‑1
                                   GCCTTACGCAACAACTGGTTCTGGCGGCCTATCTC    <  1:6980097/35‑1
                                   GCCTTACGCAACAACTGGTTCTGGCGGCCTATCTC    <  1:8979058/35‑1
                                   GCCTTACGCAACAACTGGTTCTGGCGGCCTATCTC    <  1:9574813/35‑1
                                    CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG   <  1:6313201/35‑1
                                    CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG   >  1:19330625/1‑35
                                    CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG   <  1:10502726/35‑1
                                    CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG   <  1:7478268/35‑1
                                    CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG   <  1:10450596/35‑1
                                    CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG   >  1:15242602/1‑35
                                    CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG   <  1:16854641/35‑1
                                    CCTTACGCAACAACTGGTTCTGGCGGCCTATCTCG   >  1:18154855/1‑35
                                     CTTACGCAACAACTGGTTCTGGCGGCCTATCTCGG  <  1:16471122/35‑1
                                     CTTACGCAACAACTGGTTCTGGCGGCCTATCTCGG  <  1:9020873/35‑1
                                     CTTACGCAACAACTGGTTCTGGCGGCCTATCTCGG  <  1:10729167/35‑1
                                                                        
CAACTCACCCCGCACCGTGCCCATAAAAAAACCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1286744‑1286707
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccTTACGCAACAACTGGTTCTGGCGGCCTATCTCGG  <  REL606/4286236‑4286203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.