New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1286708 =97 (0.940)10 (0.120) 4/40 NT 12.7% intergenic (+32/‑151) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein
?REL606 = 4391784 57 (0.670)coding (602/1164 nt) yjfC predicted synthetase/amidase

Only 100 of 141 total aligned reads displayed.

TTGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGC  >  REL606/4391750‑4391818
                                  |                                  
ttGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTc                                    <  1:17815065/35‑1 (MQ=255)
ttGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTc                                    <  1:3311728/35‑1 (MQ=255)
ttGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTc                                    >  1:8215569/1‑35 (MQ=255)
ttGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTc                                    >  1:11954758/1‑35 (MQ=255)
ttGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTc                                    <  1:9032519/35‑1 (MQ=255)
 tGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCg                                   >  1:2090592‑M2/1‑34 (MQ=255)
 tGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCg                                   >  1:4189807‑M2/1‑34 (MQ=255)
 tGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCg                                   >  1:20364645‑M2/1‑34 (MQ=255)
  gCAGGACTGCGCCCAGCCGGCAGGGCAGGAGTCgc                                  >  1:6553372‑M2/1‑33 (MQ=255)
  gCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgc                                  >  1:5584004‑M2/1‑33 (MQ=255)
   cAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgcg                                 >  1:12858408‑M2/1‑32 (MQ=255)
   cAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgcg                                 <  1:2245711‑M2/35‑4 (MQ=255)
   cAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgcg                                 >  1:1664678‑M2/1‑32 (MQ=255)
    aGGACTGCGCCCAGCAGGCAGTGCAGGAGGCGCgg                                >  1:2698713/1‑35 (MQ=25)
    aGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgcgg                                <  1:1308334‑M2/35‑5 (MQ=255)
    aGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgcgg                                <  1:19157392‑M2/35‑5 (MQ=255)
    aGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgcgg                                <  1:5331845‑M2/35‑5 (MQ=255)
      gACTGCGCCGAGCAGGCAGGGCAGGAGTCGCGGtt                              <  1:1115917/35‑1 (MQ=255)
      gACTGCGCCCAGCAGGCATGGCAGGGGGCGCgggg                              >  1:5324682/1‑33 (MQ=21)
      gACTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGtt                              <  1:12166241/35‑1 (MQ=255)
       cttGCGCCCAGCAGGCAGGGCAGGAGTCGCGGttt                             <  1:2191703/33‑1 (MQ=255)
       aCTGCGCCCAGCAGGCAGGGCAGGAGTCgcggggt                             <  1:5059445‑M2/35‑8 (MQ=255)
       aCTGCGCCCAGCAGGCAGGGCAGGAGTCgcggggt                             <  1:6735293‑M2/35‑8 (MQ=255)
       aCTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGttt                             <  1:8970511/35‑1 (MQ=255)
       aCTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGttt                             <  1:8413779/35‑1 (MQ=255)
       aCTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGttt                             <  1:16389395/35‑1 (MQ=255)
        cTGCGCTCAGCAGGCAGGGCAGGAGTCGCGGTTTa                            <  1:8309684/35‑1 (MQ=255)
        cTGCGCCCAGCAGGCAGGGCAGGAGTCgcgggggt                            <  1:2160901‑M2/35‑9 (MQ=255)
        cTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGTTTa                            <  1:117490/35‑1 (MQ=255)
         tGCGCCCAGCAGGCAGGGCAGGAGTCGCGGTTTAt                           <  1:3422269/35‑1 (MQ=255)
         tGCGCCCAGCAGGCAGGGCAGGAGTCGCGGTTTAt                           <  1:10884415/35‑1 (MQ=255)
         tGCGCCCAGCAGGCAGGGCAGGAGCCGCGGgtttt                           >  1:3481486/1‑33 (MQ=25)
          gcgcCCAGCAGGCAGGGCAGGAGTCgcggggtttt                          <  1:15266931‑M2/35‑11 (MQ=255)
          gcgcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATc                          <  1:3645352/35‑1 (MQ=255)
          gcgcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATc                          <  1:15840862/35‑1 (MQ=255)
          gcgcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATc                          <  1:58614/35‑1 (MQ=255)
          gcgcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATc                          <  1:13825674/35‑1 (MQ=255)
          gcgcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATc                          <  1:1206011/35‑1 (MQ=255)
          gcgcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATc                          <  1:11448314/35‑1 (MQ=255)
            gcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTa                        <  1:15639415/35‑1 (MQ=255)
            gcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTa                        <  1:19034871/35‑1 (MQ=255)
            gcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTa                        <  1:6020309/35‑1 (MQ=255)
            gcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTa                        <  1:2596467/35‑1 (MQ=255)
            gcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTa                        <  1:11483335/35‑1 (MQ=255)
            gcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTa                        <  1:9072970/35‑1 (MQ=255)
             cccAGCAGGCAGGGCAGGAGTCGCGGTTTATCTAc                       <  1:9527553/35‑1 (MQ=255)
             cccAGCAGGCAGGGCAGGAGTCGCGGTTTATCTAc                       <  1:9660006/35‑1 (MQ=255)
             cccAGCAGGCAGGGCAGGAGTCGCGGTTTATCTAc                       <  1:14014385/35‑1 (MQ=255)
              ccAGCAGGCAGGGCAGGAGTCgcggggttttttta                      <  1:4449016‑M2/35‑15 (MQ=255)
               cagcagGCAGGGCAGGAGTCgcggggtttttttat                     <  1:8681870‑M2/35‑16 (MQ=255)
               cagcagGCAGGGCAGGAGTCgcggggttttttcac                     <  1:200466‑M2/35‑16 (MQ=255)
               cagcagGCAGGGCAGGAGTCGCGGTTTATCTACAt                     <  1:2436587/35‑1 (MQ=255)
               cagcagGCAGGGCAGGAGTCGCGGTTTATCTACAt                     <  1:7184259/35‑1 (MQ=255)
               cagcagGCAGGGCAGGAGTCGCGGTTTATCTACAt                     <  1:10547788/35‑1 (MQ=255)
               cagcagGCAGGGCAGGAGTCGCGGTTTATCTACAt                     <  1:4021069/35‑1 (MQ=255)
               cagcagGCAGGGCAGGAGTCGCGGTTTATCTACAt                     <  1:12488878/35‑1 (MQ=255)
               cagcagGCAGGGCAGGAGTCGCAGGTTTTCTACAt                     >  1:7273636/1‑35 (MQ=25)
                nncagnnaggGCAGGAGTCGCGGTTTATCTACAtt                    <  1:11064581/33‑1 (MQ=255)
                agcagGCAGGGCAGGAGTCGCGGTTTATCTACAtt                    <  1:7346457/35‑1 (MQ=255)
                agcagGCAGGGCAGGAGTCGCGGTTTATCTACAtt                    <  1:9633428/35‑1 (MQ=255)
                  caggcaggGCAGGAGTCGCGGTTTATCTACATTGa                  <  1:18661862/35‑1 (MQ=255)
                  caggcaggGCAGGAGTCGCGGTTTATCTACATTGa                  <  1:9595763/35‑1 (MQ=255)
                  caggcaggGCAGGAGTCGCGGGTTTTTTTCAtttt                  >  1:15018792/1‑33 (MQ=12)
                   aggcaggGCAGGAGTCGCGGTTTATCTACATTGaa                 <  1:8036935/35‑1 (MQ=255)
                   aggcaggGCAGGAGTCGCGGTTTATCTACATTGaa                 <  1:714424/35‑1 (MQ=255)
                    ggcagggcagGAGTCGCGGTTTATCTACATTGAAg                <  1:16482318/35‑1 (MQ=255)
                    ggcagggcagGAGTCGCGGTTTATCTACATTGAAg                <  1:4761332/35‑1 (MQ=255)
                    ggcagggcagGAGTCGCGGTTTATCTACATTGAAg                <  1:19870859/35‑1 (MQ=255)
                    ggcagggcagGAGTCGCGGCTTATCTACATTGAAg                <  1:5588283/35‑1 (MQ=255)
                     gcagggcaggAGTCGCGGTTTATCTACATTGAAGa               <  1:16970757/35‑1 (MQ=255)
                     gcagggcaggAGTCGCGGTTTATCTACATTGAAGa               <  1:15600613/35‑1 (MQ=255)
                       agggcaggAGTCGCGGTTTATCTACATTGAAGAtc             <  1:5416139/35‑1 (MQ=255)
                        gggcaggAGTCGCGGTTTATCTACATTGAAGAtct            <  1:7488467/35‑1 (MQ=255)
                         ggcaggAGTCGCGGTTTATCTACATTGAAGAtctc           <  1:8856647/35‑1 (MQ=255)
                         ggcaggAGTCGCGGTTTATCTACATTGAAGAtctc           <  1:17945708/35‑1 (MQ=255)
                          gcaggAGTCGCGGTTTATCTACATTTAAGATCTCg          <  1:733011/35‑1 (MQ=255)
                          gcaggAGTCGCGGTTTATCTACATTGAAGATCTCg          <  1:1050493/35‑1 (MQ=255)
                          gcaggAGTCGCGGTTTATCTACATTGAAGATCTCg          <  1:15816035/35‑1 (MQ=255)
                           caggAGTCGCGGTTTATCTACATTGAAGATCTCgg         <  1:17649547/35‑1 (MQ=255)
                           caggAGTCGCGGTTTATCTACATTGAAGATCTCgg         <  1:7288024/35‑1 (MQ=255)
                            aggAGTCGCGGTTTATCTACATTGAAGATCTCGGt        <  1:2078213/35‑1 (MQ=255)
                            aggAGTCGCGGTTTATCTACATTGAAGATCTCGGt        <  1:14325133/35‑1 (MQ=255)
                            aggAGTCGCGGTTTATCTACATTGAAGATCTCGGt        <  1:741760/35‑1 (MQ=255)
                            aggAGTCGCGGTTTATCTACATTGAAGATCTCGGt        <  1:6705366/35‑1 (MQ=255)
                              gAGTCGCGGTTTATCTACATTGAAGATCTCGGttt      <  1:6201958/35‑1 (MQ=255)
                              gAGTCGCGGTTTATCTACATTGAAGATCTCGGttt      <  1:14535521/35‑1 (MQ=255)
                              gAGTCGCGGTTTATCTACATTGAAGATCTCGGttt      <  1:8391668/35‑1 (MQ=255)
                              gAGTCGCGGTTTATCTACATTGAAGATCTCGGttt      <  1:4013466/35‑1 (MQ=255)
                               aGTCGCGGTTTATCTACATTGAAGATCTAGGTTTg     <  1:20394716/35‑1 (MQ=255)
                                gTCGCGGTTTATCTACATTGAAGATCTCGGTTTgg    <  1:6898946/35‑1 (MQ=255)
                                gTCGCGGTTTATCTACATTGAAGATCTCGGTTTgg    <  1:11958775/35‑1 (MQ=255)
                                 tCGCGGTTTATCTACATTTAAGATCTCGGTTTggg   <  1:1677958/35‑1 (MQ=255)
                                 tCGCGGTTTATCTACATTGAAGATCTCGGTTTggg   >  1:3090288/1‑35 (MQ=255)
                                 tCGCGGTTTATCTACATTGAAGATCTCGGTTTggg   >  1:14566937/1‑35 (MQ=255)
                                 tCGCGGTTTATCTACATTGAAGATCTCGGTTTggg   >  1:5665351/1‑35 (MQ=255)
                                 tCGCGGTTTATCTACATTGAAGATCTCGGTTTggg   <  1:15090528/35‑1 (MQ=255)
                                  cgcgGTTTATCTACATTGAAGATCTCGGTTTGGGc  <  1:4836960/35‑1 (MQ=255)
                                  cgcgGTTTATCTACATTGAAGATCTCGGTTTGGGc  >  1:17871794/1‑35 (MQ=255)
                                  cgcgGTTTATCTACATTGAAGATCTCGGTTTGGGc  <  1:19092340/35‑1 (MQ=255)
                                  cgcgGTTTATCTACATTGAAGATCTCGGTTTGGGc  <  1:7583687/35‑1 (MQ=255)
                                  |                                  
TTGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGC  >  REL606/4391750‑4391818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.