New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1332666 =72 (0.700)5 (0.060) 4/36 NT 7.6% coding (440/975 nt) cysB DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding
?REL606 = 4432999 68 (0.880)intergenic (‑97/‑213) ppa/ytfQ inorganic pyrophosphatase/predicted sugar transporter subunit: periplasmic‑binding component of ABC superfamily

Only 100 of 162 total aligned reads displayed.

GATGCCGTCTCTAAAGGCAATGCTGATTTCGCTATCGCCACAGAAGCGCTGCATCTGTATGAAGATTTA  >  REL606/1332632‑1332700
                                  |                                  
tgtcttcgcttgttttcgtcttcattttccttttt                                    >  1:5011474‑M1/35‑35 (MQ=255)
gATGCCGTCTCTAAAGGCAATGCTGATTTCGCTAt                                    <  1:12469433/35‑1 (MQ=255)
 gtcttcgcttgttttcgtcttcattttccttttTc                                   >  1:6169422‑M1/34‑35 (MQ=255)
 gtcttcgcttgttttcgtcttcattttccttttTc                                   <  1:8045780‑M1/2‑1 (MQ=255)
 gtcttcgcttgttttcgtcttcattttccttttTc                                   <  1:1421305‑M1/2‑1 (MQ=255)
 gtcttcgcttgttttcgtcttcattttccttttTc                                   >  1:5241325‑M1/34‑35 (MQ=255)
 gtcttcgcttgttttcgtcttcattttccttttTc                                   >  1:2894191‑M1/34‑35 (MQ=255)
 gtcttcgcttgttttcgtcttcattttcattttTc                                   >  1:12422934‑M1/34‑35 (MQ=255)
 aTGCCGTCTCTAAAGGCAATGCTGATTTCGCTAtg                                   <  1:1721402/35‑2 (MQ=255)
 aTGCCGTCTCTAAAGGCAATGCTGATTTCGCTATc                                   >  1:9227358/1‑35 (MQ=255)
 aTGCCGTCTCTAAAGGCAATGCTGATTTCGCTATc                                   >  1:15864772/1‑35 (MQ=255)
 aTGCCGTCTCTAAAGGCAATGCTGATTTCGCTATc                                   <  1:15514169/35‑1 (MQ=255)
 aTGCCGTCTCTAAAGGCAATGCTGATTTCGCTATc                                   <  1:5326865/35‑1 (MQ=255)
 aTGCCGTCTCTAAAGGCAATGCTGATTTCGCTATc                                   <  1:13199001/35‑1 (MQ=255)
  tcttcgcttgttttcgtcttcattttccttttTCg                                  >  1:16864209‑M1/33‑35 (MQ=255)
  tGCCGTCTCTAAAGGCAATGCTGATTTCGCTATCg                                  <  1:3607868/35‑1 (MQ=255)
  tGCCGTCTCTAAAGGCAATGCTGATTTCGCTATCg                                  <  1:12137541/35‑1 (MQ=255)
  tGCCGTCTCTAAAGGCAATGCTGATTTCGCTATCg                                  <  1:11916692/35‑1 (MQ=255)
  gcccGTCTCTAAAGGCAATGCTTATTTCGCTATCg                                  <  1:5604643/33‑1 (MQ=38)
   gCCGTCTCTAAAGGCAATGCTGATTTCGCTATCGc                                 <  1:12785156/35‑1 (MQ=255)
   gCCGTCTCTAAAGGCAATGCTGATTTCGCTATCGc                                 <  1:17148893/35‑1 (MQ=255)
   gCCGTCTCTAAAGGCAATGCTGATTTCGCTATCGc                                 <  1:5620990/35‑1 (MQ=255)
   cttcgcttgttttcgtcttcattttccttttTCGc                                 >  1:19952737‑M1/32‑35 (MQ=255)
   attcgcttgttttcgtcttcattttccttttTCGc                                 >  1:16272669‑M1/32‑35 (MQ=255)
    ttcgcttgttttcgtcttcattttccttttTCGcc                                <  1:6268450‑M1/5‑1 (MQ=255)
    ttcgcttgttttcgtcttcattttccttttTCGcc                                >  1:14906554‑M1/31‑35 (MQ=255)
    ttcgcttgttttcgtcttcattttccttttTCGcc                                >  1:10245122‑M1/31‑35 (MQ=255)
    ccGTCTCTAAAGGCAATGCTGATTTCGCTATCGcc                                <  1:5438883/35‑1 (MQ=255)
    ccGTCTCTAAAGGCAATGCTGATTTCGCTATCGcc                                <  1:9601932/35‑1 (MQ=255)
     tcgcttgttttcgtcttcattttccttttTCGCca                               >  1:16719874‑M1/30‑35 (MQ=255)
     tcgcttgttttcgtcttcattttccttttTCGCca                               <  1:1534831‑M1/6‑1 (MQ=255)
     tcgcttgttttcgtcttcattttccttttTCGCca                               >  1:1967099‑M1/30‑35 (MQ=255)
     tcgcttgttttcgtcttcattttccttttTCGCca                               <  1:6850604‑M1/6‑1 (MQ=255)
     cGTCTCTAAAGGCAATGCTGATTTCGCTATCGTca                               >  1:4405251/1‑35 (MQ=255)
     cGTCTCTAAAGGCAATGCTGATTTCGCTATCGCca                               >  1:8830112/1‑35 (MQ=255)
     cGTCTCTAAAGGCAATGCTGATTTCGCTATCGCca                               <  1:3838590/35‑1 (MQ=255)
     cGTCTCTAAAGGCAATGCTGATTTCGCTATCGCca                               <  1:9740218/35‑1 (MQ=255)
      gTCTCTAAAGGCAATGCTGATTTCGCTATCGCcac                              >  1:6959200/1‑35 (MQ=255)
      gTCTCTAAAGGCAATGCTGATTTCGCTATCGCcac                              >  1:3123832/1‑35 (MQ=255)
       tctcTAAAGGCAATGCTGATTTCGCTATTGCcaca                             <  1:20597054/35‑1 (MQ=255)
       tctcTAAAGGCAATGCTGATTTCGCTATCGCcaca                             >  1:12069197/1‑35 (MQ=255)
        ctctAAAGGCAATGCTGATTTCGCTATCGCCACAg                            >  1:9117928/1‑35 (MQ=255)
         tctAAAGGCAATGCTGATTTCGCTATCGCCACAGa                           >  1:13588842/1‑35 (MQ=255)
         tctAAAGGCAATGCTGATTTCGCTATCGCCACAGa                           >  1:3927622/1‑35 (MQ=255)
         tctAAAGGCAATGCTGATTTCGCTATCGCCACAGa                           >  1:7880740/1‑35 (MQ=255)
         tctAAAGGCAATGCTGATTTCGCTATCGCCACAGa                           >  1:16093089/1‑35 (MQ=255)
          ctAAAGGCAATGCTGATTTCGCTATCGCCACAGaa                          >  1:8224385/1‑35 (MQ=255)
           tAAAGGCAATGCTGATTTCGCTATCGCCACAGAAg                         >  1:18717265/1‑35 (MQ=255)
           tAAAGGCAATGCTGATTTCGCTATCGCCACAGAAg                         >  1:16047453/1‑35 (MQ=255)
            aaaGGCAATGCTGATTTCGCTATCGCCACAGAAgc                        >  1:14086582/1‑35 (MQ=255)
            aaaGGCAATGCTGATTTCGCTATCGCCACAGAAgc                        >  1:1221471/1‑35 (MQ=255)
            aaaGGCAATGCTGATTTCGCTATCGCCACAGAAgc                        >  1:9314369/1‑35 (MQ=255)
            aaaGGCAATGCTGATTTCGCTATCGCCACAGAAgc                        >  1:4426938/1‑35 (MQ=255)
             aaGGCAATGCTGATTTCGCTATCGCCACATAAgcg                       >  1:14395285/1‑35 (MQ=255)
             aaGGCAATGCTGATTTCGCTATCGCCACAGAAgcg                       >  1:14965178/1‑35 (MQ=255)
             aaGGCAATGCTGATTTCGCTATCGCCACAGAAgcg                       >  1:3374987/1‑35 (MQ=255)
              aGGCAATGCTGATTTCGCTATCGCCACAGAAgcgc                      >  1:2563272/1‑35 (MQ=255)
               ggCAATGCTGATTTCGCTATCGCCACAGAAGCGCt                     >  1:18347435/1‑35 (MQ=255)
                 cAATGCTGATTTCGCTATCGCCACAGAAGCGCTGc                   >  1:2031790/1‑35 (MQ=255)
                 cAATGCTGATTTCGCTATCGCCACAGAAGCGCTGc                   >  1:15143847/1‑35 (MQ=255)
                  aaTGCTGATTTCGCTATCGCCACAGAAGCGCTGCa                  >  1:6573055/1‑35 (MQ=255)
                  aaTGCTGATTTCGCTATCGCCACAGAAGCGCTGCa                  >  1:12081750/1‑35 (MQ=255)
                    ttctttttccttttTCGCCACAGAAGCGCTGCATc                >  1:7121480‑M1/15‑35 (MQ=255)
                    tGCTGATTTCGCTATCGCCACAGAAGCGCTGCATc                >  1:10720871/1‑35 (MQ=255)
                     gCTGATTTCGCTATCGCCACAGAAGCGCTGCATCt               >  1:11939217/1‑35 (MQ=255)
                     gCTGATTTCGCTATCGCCACAGAAGCGCTGCATCt               >  1:16903682/1‑35 (MQ=255)
                     gCTGATTTCGCTATCGCCACAGAAGCGCTGCATCt               >  1:10813431/1‑35 (MQ=255)
                     gCTGATTTCGCTATCGCCACAGAAGCGCTGCATCt               >  1:6294008/1‑35 (MQ=255)
                     gCTGATTTCGCTATCGCCACAGAAGCGCTGCATCt               >  1:7207737/1‑35 (MQ=255)
                      cTGATTTCGCTATCGCCACAGAAGCGCTGCATCTg              >  1:6496790/1‑35 (MQ=255)
                        gATTTCGCTATCGCCACAGAAGCGCTGCATCTGTa            >  1:779358/1‑35 (MQ=255)
                         ttttCGTTTTCGCCACAGAAGCGCTGCATCTGTAt           <  1:20447631/34‑1 (MQ=25)
                          tttCGCTATCGCCACAGAAGCGCTGCATCTGTATg          >  1:2520028/1‑35 (MQ=255)
                          ttccttttTCGCCACAGAAGCGCTGCATCTGTATg          >  1:8680838‑M1/9‑35 (MQ=255)
                          ttccgtttTCGCCACAGAAGCGCTGCATCTGTATg          >  1:12877139‑M1/9‑35 (MQ=255)
                           ttCGTTTTCGCCACAGAAGCGCTGCATCTGTATGa         <  1:7047617/35‑1 (MQ=37)
                           ttCGTTATCGCCACAGAAGCGCTGCATCTGTATGa         <  1:11382289/35‑1 (MQ=255)
                           tccgtttTCGCCACAGAAGCGCTGCATCTGTATGa         >  1:17768240‑M1/8‑35 (MQ=255)
                            tCGTTATCGCCACAGAAGCGCTGCATCTGTATGaa        <  1:10447551/35‑1 (MQ=255)
                            ccgtttTCGCCACAGAAGCGCTGCATCTGTATGaa        >  1:8456915‑M1/7‑35 (MQ=255)
                             cgttATCGCCACAGAAGCGCTGCATCTGTATGAAg       <  1:1578749/32‑1 (MQ=255)
                             cGCTATCGCCACAGAAGCGCTGCATCTGTATGAAg       >  1:9795487/1‑35 (MQ=255)
                             cGCTATCGCCACAGAAGCGCTGCATCTGTATGAAg       >  1:16738344/1‑35 (MQ=255)
                              gCTATCGCCACAGAAGCGCTGCATCTGTATGAAGa      >  1:7281472/1‑35 (MQ=255)
                              gCTATCGCCACAGAAGCGCTGCATCTGTATGAAGa      >  1:18382847/1‑35 (MQ=255)
                               tttTCGCCACAGAAGCGCTGCATCTGTATGAAGAt     >  1:14715296‑M1/4‑35 (MQ=255)
                               cTATCGCCACAGAAGCGCTGCATCTGTATGAAGAt     >  1:3369416/1‑35 (MQ=255)
                               cTATCGCAACAGAAGCGCTGCATCTGTATGAAGAt     <  1:19034398/35‑1 (MQ=255)
                                tATCGCCACAGAAGCGCTGCATCTGTATGAAGAtt    >  1:18954915/1‑35 (MQ=255)
                                 tTCGCCACAGAAGCGCTGCATCTGTATGAAGAttt   >  1:17214944‑M1/2‑35 (MQ=255)
                                 tTCGCCACAGAAGCGCTGCATCTGTATGAAGAttt   >  1:17476967‑M1/2‑35 (MQ=255)
                                 aTCGCCACAGAAGCGCTGCATCTGTATGAAGAttt   >  1:11007184/1‑35 (MQ=255)
                                 aTCGCCACAGAAGCGCTGCATCTGTATGAAGAttt   >  1:14896010/1‑35 (MQ=255)
                                 aTCGCCACAGAAGCGCTGCATCTGTATGAAGAttt   >  1:17925957/1‑35 (MQ=255)
                                 aTCGCCACAGAAGCGCTGCATCTGTATGAAGAttt   >  1:19901753/1‑35 (MQ=255)
                                 aTCGCCACAGAAGCGCTGCATCTGTATGAAGAttt   >  1:2837391/1‑35 (MQ=255)
                                 aTCGCCACAGAAGCGCTGCATCTGTATGAAGAttt   >  1:7619041/1‑35 (MQ=255)
                                 aTCGCCACAGAAGCGCTGCATCTGTATGAAGAttt   >  1:4577066/1‑35 (MQ=255)
                                  TCGCCACAGAAGCGCTGCATCTGTATGAAGATTTa  >  1:1151521‑M1/1‑35 (MQ=255)
                                  TCGCCACAGAAGCGCTGCATCTGTATGAAGATTTa  >  1:5434526‑M1/1‑35 (MQ=255)
                                  |                                  
GATGCCGTCTCTAAAGGCAATGCTGATTTCGCTATCGCCACAGAAGCGCTGCATCTGTATGAAGATTTA  >  REL606/1332632‑1332700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.