New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2377427 =84 (0.820)11 (0.120) 6/42 NT 16.1% coding (92/915 nt) accD acetyl‑CoA carboxylase subunit beta
?REL606 3367495 = 41 (0.460)intergenic (‑81/+26) yhdN/rplQ hypothetical protein/50S ribosomal protein L17

Only 100 of 172 total aligned reads displayed.

ATTACGTTCCAGCTCAGCGCGGTATAAAACCTGACCGCAGCTATCACACTTAGTCCACACCCCTTCAGG  >  REL606/2377393‑2377461
                                  |                                  
cagagtaatctgaatcaacgtaaaaaaacccgccc                                    <  1:769407‑M1/1‑1 (MQ=255)
cagagtaatctgaagcaacgtaaaaaaacccgccc                                    <  1:11691360‑M1/1‑1 (MQ=255)
cagagtaatctgaagcaacgtaaaaaaacccgccc                                    >  1:16674867‑M1/35‑35 (MQ=255)
aTTACGTTCCAGCTCAGCGCTGTATAAAACCTGAc                                    >  1:19078137/1‑35 (MQ=255)
 ttACGTTCCAGCTCAGCGCGGTATAAAACCTGAcc                                   <  1:11579697/35‑1 (MQ=255)
 ttACGTTCCAGCTCAGCGCGGTATAAAACCTGAcc                                   >  1:12143393/1‑35 (MQ=255)
 ttACGTTCCAGCTCAGCGCGGTATAAAACCTGAcc                                   <  1:1222039/35‑1 (MQ=255)
 ttACGTTCCAGCTCAGCGCGGTATAAAACCTGAcc                                   <  1:13010976/35‑1 (MQ=255)
 ttACGTTCCAGCTCAGCGCGGTATAAAACCTGAcc                                   <  1:8534326/35‑1 (MQ=255)
 ttACGTTCCAGCTCAGCGCGGTATAAAACCTGAcc                                   >  1:14748358/1‑35 (MQ=255)
 ttACGTTCCAGCTCAGCGCGGTATAAAACCTGAcc                                   >  1:18433104/1‑35 (MQ=255)
 ttACGTTCCAGCTCAGCGCGGTATAAAACCTGAcc                                   <  1:10173424/35‑1 (MQ=255)
 ttACGTTCCAGCTCAGCGCGGTATAAAACCTGAcc                                   <  1:5347726/35‑1 (MQ=255)
  tACTTTCCAGCTCAGCGCGGTATAAAACCTGACCg                                  >  1:18793366/1‑35 (MQ=255)
  tACGTTCCAGCTCAGCGCGGTATAAAACCTGACCg                                  >  1:17006668/1‑35 (MQ=255)
  tACGTTCCAGCTCAGCGCGGTATAAAACCTGACCg                                  >  1:3310607/1‑35 (MQ=255)
  tACGTTCCAGCTCAGCGCGGTATAAAACCTGACCg                                  >  1:4660868/1‑35 (MQ=255)
    cGTTCCAGCTCAGCTCGGTATAAAACCTGACCGCa                                >  1:10094923/1‑35 (MQ=255)
    cGTTCCAGCTCAGCGCGGTATAAAACCTGACCGCa                                <  1:6019960/35‑1 (MQ=255)
    cGTTCCAGCTCAGCGCGGTATAAAACCTGACCGCa                                >  1:7105632/1‑35 (MQ=255)
    cGTTCCAGCTCAGCGCGGTATAAAACCTGACCGCa                                >  1:15533511/1‑35 (MQ=255)
    cGTTCCAGCTCAGCGCGGTATAAAACCTGACCGCa                                >  1:1103303/1‑35 (MQ=255)
    cGTTCCAGCTCAGCGCGGTATAAAACCTGACCGCa                                >  1:861711/1‑35 (MQ=255)
     gTTCCAGCTCAGCGCGGTATAAAACCTGACCGCAg                               <  1:11816159/35‑1 (MQ=255)
     gTTCCAGCTCAGCGCGGTATAAAACCTGACCGCAg                               >  1:11914781/1‑35 (MQ=255)
     gTTCCAGCTCAGCGCGGTATAAAACCTGACCGCAg                               >  1:14871464/1‑35 (MQ=255)
      ttCCAGCTCAGCGCGGTATAAAACCTGACCGCAGc                              >  1:16886940/1‑35 (MQ=255)
      ttCCAGCTCAGCGCGGTATAAAACCTGACCGCAGc                              >  1:11408799/1‑35 (MQ=255)
       tCCAGCTCAGCGCGGTATAAAACCTGACCGCAGCt                             >  1:13879727/1‑35 (MQ=255)
       tCCAGCTCAGCGCGGTATAAAACCTGACCGCAGCt                             >  1:2295857/1‑35 (MQ=255)
        ccAGCTCAGCGCGGTATAAAACCTGACCGCAGCTa                            >  1:11382744/1‑35 (MQ=255)
         cAGCTCAGCGCGGTATAAAACCTGACCGCAGCTAt                           >  1:3203531/1‑35 (MQ=255)
         cAGCTCAGCGCGGTATAAAACCTGACCGCAGCTAt                           >  1:16474934/1‑35 (MQ=255)
          aGCTCAGCGCGGTATAAAACCTGACCGCAGCTATc                          >  1:9183101/1‑35 (MQ=255)
           gCTCAGCGCGGTATAAAACCTGACCGCAGCTATca                         >  1:82340/1‑35 (MQ=255)
            ntCATCGCGGTATAAAACCTGACCGCAGCTATcac                        >  1:10379569/2‑35 (MQ=255)
            cTCAGCTCGGTATAAAACCTGACCGCAGCTATcac                        >  1:1120678/1‑35 (MQ=255)
            cTCAGCGCGGTATAAAACCTGACCGCAGCTATcac                        >  1:2609625/1‑35 (MQ=255)
             tCAGCGCGGTATAAAACCTGACCGCAGCTATcaca                       >  1:5940312/1‑35 (MQ=255)
             tCAGCGCGGTATAAAACCTGACCGCAGCTATcaca                       >  1:8894369/1‑35 (MQ=255)
              cAGCGCGGTATAAAACCTGACCGCAGCTATCacac                      >  1:10352947/1‑35 (MQ=255)
              cAGCGCGGTATAAAACCTGACCGCAGCTATCacac                      >  1:18710535/1‑35 (MQ=255)
               aGCGCGGTATAAAACCTGACCGCAGCTATCACACt                     >  1:11092400/1‑35 (MQ=255)
               aGCGCGGTATAAAACCTGACCGCAGCTATCACACt                     >  1:6841030/1‑35 (MQ=255)
               aGCGCGGTATAAAACCTGACCGCAGCTATCACACt                     >  1:3688835/1‑35 (MQ=255)
               aGCGCGGTATAAAACCTGACCGCAGCTATCACACt                     >  1:10505106/1‑35 (MQ=255)
               aGCGCGGTATAAAACCTAACCGCAGCTATCACACt                     >  1:1586801/1‑35 (MQ=255)
                gcgcGGTATAAAACCTGACCGCAGCTATCACACtt                    >  1:10443733/1‑35 (MQ=255)
                gcgcGATAAAAACCCTGCCCGCAGCTATCACACtt                    <  1:12234197/35‑1 (MQ=19)
                 cgcgGTATAAAACCTGACCTCAGCTATCACACTTa                   >  1:9710081/1‑35 (MQ=255)
                 cgcgGTATAAAACCTGACCGCAGCTATCACACTTa                   >  1:4815987/1‑35 (MQ=255)
                  gcgGTATAAACCCTGCCCGAAGCTATCACACTTAg                  <  1:801637/35‑1 (MQ=25)
                  gcgGTATAAAACCTGACCGCAGCTATCACACTTAg                  >  1:9571220/1‑35 (MQ=255)
                  gcgGTATAAAACCTGACCGCAGCTATCACACTTAg                  >  1:4287104/1‑35 (MQ=255)
                  gcgGTATAAAACCTGACCGCAGCTATCACACTTAg                  >  1:738188/1‑35 (MQ=255)
                  gcgGTATAAAACCTGACCGCAGCTATCACACTTAg                  >  1:10593162/1‑35 (MQ=255)
                  gcgGTATAAAACCTGACCGCAGCTATCACACTTAg                  >  1:12435423/1‑35 (MQ=255)
                   cgGTATAAAACCTGACCGCAGCTATCACACTTAGt                 >  1:14788395/1‑35 (MQ=255)
                    ggTATAAAACCTGACCGCAGCTATCACACTTAGTc                >  1:12794030/1‑35 (MQ=255)
                     gTATAAAACCTGACCGCAGCTATCACACTTAGTcc               >  1:10969644/1‑35 (MQ=255)
                      tataAAACCTGTCCGCAGCTATCACACTTAGTCca              >  1:7482731/1‑35 (MQ=255)
                      tataAAACCTGACCGCAGCTATCACACTTAGTCca              >  1:19867535/1‑35 (MQ=255)
                      aaaaaacccgccCCGCAGCTATCACACTTAGTCca              >  1:2572033‑M1/13‑35 (MQ=255)
                       aaaaacccaccCCGCAGCTATCACACTTAGTCcac             >  1:15294299‑M1/12‑35 (MQ=255)
                        taAAACCTGACCGCAGCTATCACACTTAGTCcaca            >  1:7207115/1‑35 (MQ=255)
                        taAAACCTGACCGCAGCTATCACACTTAGTCcaca            >  1:4435498/1‑35 (MQ=255)
                        taAAACCTGACCGCAGCTATCACACTTAGTCcaca            >  1:10616520/1‑35 (MQ=255)
                         aaaccctccCCGCAGCTATCACACTTAGTCCacac           >  1:16043175‑M1/10‑35 (MQ=255)
                         aaaccccccCCGCAGCTATCACACTTAGTCCacac           >  1:6111191‑M1/10‑35 (MQ=255)
                          aaccctccCCGCAGCTATCACACTTAGTCCACAcc          >  1:16132828‑M1/9‑35 (MQ=255)
                          aaaCCTGACCGCAGCTATCACACTTAGTCCACAcc          >  1:7662527/1‑35 (MQ=255)
                          aaaCCTGACCGCAGCTATCACACTTAGTCCACAcc          >  1:4502977/1‑35 (MQ=255)
                           aaCCTGACCGCAGCTATCACACTTAGTCCACAccc         >  1:9801425/1‑35 (MQ=255)
                            aCCTGACCGCAGCTATCACACTTAGTCCACAcccc        >  1:10264691/1‑35 (MQ=255)
                            aCCTGACCGCAGCTATCACACTTAGTCCACAcccc        >  1:4922182/1‑35 (MQ=255)
                            aCCTGACCGCAGCTATCACACTTAGTCCACAcccc        >  1:7348775/1‑35 (MQ=255)
                             ccTGACCGCAGCTATCACACTTAGTCCACACCCCt       >  1:4967556/1‑35 (MQ=255)
                             ccTGACCGCAGCTATCACACTTAGTCCACACCCCt       >  1:17899527/1‑35 (MQ=255)
                             ccTGACCGCAGCTATCACACTTAGTCCACACCCCt       >  1:14681467/1‑35 (MQ=255)
                              ccgcCCGCAGCTATCACACTTAGTCCACACCCCtt      >  1:1341177‑M1/5‑35 (MQ=255)
                              cTGACCGCAGCTATCACACTTAGTCCACACCCCtt      >  1:10793174/1‑35 (MQ=255)
                              cTGACCGCAGCTATCACACTTAGTCCACACCCCtt      >  1:12339372/1‑35 (MQ=255)
                              cTGACCGCAGCTATCACACTTAGTCCACACCCCtt      >  1:19496625/1‑35 (MQ=255)
                              cTGACCGCAGCTATCACACTTAGTCCACACCCCtt      >  1:7816464/1‑35 (MQ=255)
                               tccCCGCAGCTATCACACTTAGTCCACACCCCTTc     >  1:960621‑M1/4‑35 (MQ=255)
                               tccCCGCAGCTATCACACTTAGTCCACACCCCTTc     >  1:5047131‑M1/4‑35 (MQ=255)
                               ggcccGCAGCTATCACACTTAGTCAACACCCCTTc     <  1:15223547/32‑1 (MQ=38)
                               gacCCGCAGCTATCACACTTAGTCCACACCCCTTc     >  1:154067‑M1/4‑35 (MQ=255)
                                gcCCGCAGCTATCACACTTAGTCCACACCCCTTCa    >  1:15785729‑M1/3‑35 (MQ=255)
                                gACCGCAGCTATCACACTTAGTCCACGCCCCTTCa    >  1:3465929/1‑35 (MQ=255)
                                gACCGCAGCTATCACACTTAGTCCACACCCCTTCa    >  1:15618824/1‑35 (MQ=255)
                                 cCCGCAGCTATCACACTTAGTCCACACCCCTTCAg   >  1:17650155‑M1/2‑35 (MQ=255)
                                 cCCGCAGCTATCACACTTAGTCCACACCCCTTCAg   >  1:13378706‑M1/2‑35 (MQ=255)
                                 aCCGCAGCTATCACACTTAGTCCACACCCCTTCAg   >  1:7632522/1‑35 (MQ=255)
                                  CCGCAGCTATCACACTTAGTCCACACCCCTTCAgg  <  1:17284911‑M1/35‑1 (MQ=255)
                                  CCGCAGCTATCACACTTAGTCCACACCCCTTCAgg  >  1:7951529‑M1/1‑35 (MQ=255)
                                  CCGCAGCTATCACACTTAGTCCACACCCCTTCAgg  >  1:14172894‑M1/1‑35 (MQ=255)
                                  CCGCAGCTATCACACTTAGTCCACACCCCTTCAgg  <  1:17776412‑M1/35‑1 (MQ=255)
                                  CCGCAGCTATCACACTTAGTCCACACCCCTTCAgg  <  1:641646‑M1/35‑1 (MQ=255)
                                  CCGCAGCTATCACACTTAGTCCACACCCCTTCAgg  <  1:20243951‑M1/35‑1 (MQ=255)
                                  |                                  
ATTACGTTCCAGCTCAGCGCGGTATAAAACCTGACCGCAGCTATCACACTTAGTCCACACCCCTTCAGG  >  REL606/2377393‑2377461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.