New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 447249 =84 (0.820)18 (0.180) 5/46 NT 17.5% intergenic (‑21/‑197) tesB/ybaY acyl‑CoA thioesterase II/predicted outer membrane lipoprotein
?REL606 1286712 = 89 (0.900)intergenic (+36/‑147) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein

CGTTATACTCAACTCACTTTGGCTTGCTGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/447283‑447249
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGT  >  REL606/1286712‑1286745
                                                                     
CGTTATACTCAACTCACTTTGGCTTGCTGCGGCAG                                    >  1:19393917/1‑35
CGTTATACTCAACTCACTTTGGCTTGCTGCGGCAG                                    <  1:4902749/35‑1
CGTTATACTCAACTCACTTTGGCTTGCTGCGGCAG                                    >  1:3669125/1‑35
CGTTATACTCAACTCACTTTGGCTTGCTGCGGCAG                                    >  1:12295548/1‑35
CGTTATACTCAACTCACTTTGGCTTGCTGCGGCAG                                    <  1:7382773/35‑1
CGTTATACTCAACTCACTTTGGCTTGCTGCGGCAG                                    >  1:11461786/1‑35
CGTTATACTCAACTCACTTTGGCTTGCTGCGGCAG                                    >  1:10721883/1‑35
CGTTATACTCAACTCACTTTGGCTTGCTGCGGCAG                                    <  1:20366661/35‑1
 GTTATACTCAACTCACTTTGGCTTGCTGCGGCAGG                                   >  1:8794015/1‑35
 GTTATACTCAACTCACTTTGGCTTGCTGCGGCAGG                                   >  1:4106054/1‑35
 GTTATACTCAACTCACTTTGGCTTGCTGCGGCAGG                                   >  1:4424951/1‑35
  TTATACTCAACTCACTTTGGCTTGCTGCGGCCGGc                                  >  1:1108847/1‑34
  TTATACTCAACTCACTTTGGCTTGCTGCGGCAGGG                                  >  1:6752842/1‑35
  TTATACTCAACTCACTTTGGCTTGCTGCGGCAGGG                                  >  1:5724787/1‑35
   TATACTCAACTCACTTTGGCTTGCTGCGGCAGGGT                                 >  1:4199638/1‑35
    ATACTCAACTCACTTTGGCTTGCTGCGGCAGGGTT                                >  1:515354/1‑35
    ATACTCAACTCACTTTGGCTTGCTGCGGCAGGGTT                                >  1:4593894/1‑35
     TACTCAACTCACTTTGGCTTGCTGCGGCAGGTTTT                               >  1:14688577/1‑35
     TACTCAACTCACTTTGGCTTGCTGCGGCAGGGTTg                               >  1:5076293/1‑34
     TACTCAACTCACTTTGGCTTGCTGCGGCAGGGTTg                               >  1:3326994/1‑34
     TACTCAACTCACTTTGGCTTGCTGCGGCAGGGTTg                               >  1:9866277/1‑34
      ACTCAACTCACTTTGGCTTGCTGCGGCAGGGTTTT                              >  1:4583227/1‑35
       CTCAACTCACTTTGGCTTGCTGCGGCAGGGTTTTT                             >  1:11804003/1‑35
       CTCAACTCACTTTGGCTTGCTGCGGCAGGGTTGTT                             >  1:13024001/1‑35
        TCAACTCACTTTGGCTTGCTGCGGCAGGGTTTTTT                            >  1:18590846/1‑35
        TCAACTCACTTTGGCTTGCTGCGGCAGGGTTGTTT                            >  1:9217269/1‑35
        TCAACTCACTTTGGCTTGCTGCGGCAGGGGTTTTT                            >  1:20332040/1‑35
         CAACTCACTTTGGCTTGCTGCGGCAGGGTTTTTTg                           >  1:11313194/1‑34
         CAACTCACTTTGGCTTGCTGCGGCAGGGTTTTTTc                           >  1:16507253/1‑34
         CAACTCACTTTGGCTTGCTGCGGCAGGGTTTTTTT                           >  1:6835280/1‑35
         CAACTCACTTTGGCTTGCTGCGGCAGGGTTTTTTT                           >  1:19445803/1‑35
         CAACTCACTTTGGCTTGCTGCGGCAGGGTTGTTTT                           >  1:6168598/1‑35
          AACTCACTTTGGCTTGCTGCGGCAGGGTTTTTTTt                          >  1:4037790/1‑34
          AACTCACTTTGGCTTGCTGCGGCAGGGTTTTTTTt                          >  1:3030599/1‑34
            CTCACTTTGGCTTGCTGCGGCAGGGTTTTTTTtgg                        >  1:4015481/1‑32
            CTCACTTTGGCTTGCTGCGGCAGGGTTTTTTTTTG                        >  1:16550107/1‑35
            CTCACTTTGGCTTGCTGCGGCAGGGTTTTTTTTTG                        >  1:10662306/1‑35
             TCACTTTGGCTTGCTGCGGCAGGGTTTTTTTTTGG                       >  1:12200993/1‑35
             TCACTTTGGCTTGCTGCGGCAGGGTTTTTTTTTGG                       >  1:18337540/1‑35
                               gctGGGTTTTTTTATGGGCACGGTGCGGGGTGAGT     >  1:4998928/4‑35
                                  GGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGT  <  1:17329364/35‑1
                                  GGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGT  <  1:6447169/35‑1
                                  GGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGT  >  1:12142534/1‑35
                                  GGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGT  <  1:20186526/35‑1
                                  GGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGT  <  1:9418298/35‑1
                                                                     
CGTTATACTCAACTCACTTTGGCTTGCTGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/447283‑447249
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGT  >  REL606/1286712‑1286745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.