Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,648,342 IS1 (–) +9 bp 28.2% intergenic (+195/‑221) ynfM → / → asr predicted transporter/acid shock protein precursor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1323488NA (NA)22 (0.210) 18/48 NT 26.6% noncoding (768/768 nt) IS1 repeat region
?REL606 = 1648350 38 (0.590)intergenic (+203/‑221) ynfM/asr predicted transporter/acid shock protein precursor
* ? REL606 1648342 =36 (0.600)7 (0.090) 6/36 NT 13.1% intergenic (+195/‑229) ynfM/asr predicted transporter/acid shock protein precursor
?REL606 = 3024712 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 198 total aligned reads displayed.

AGTCTTGATCGGGTTAACTATTTTACTACTTACAAAGCGg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1648380‑1648342
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  REL606/3024712‑3024678
                                                                          
AGTCTTGATCGGGTTAACTATTTTACTACTTACAA                                         >  1:988734/1‑35
AGTCTTGATCGGGTTAACTATTTTACTACTTACAA                                         >  1:18695899/1‑35
 GTCTTGATCGGGTTAACTATTTTACTACTTACAAA                                        >  1:2580873/1‑35
 GTCTTGATCGGGTTAACTATTTTACTACTTACAAA                                        <  1:8885596/35‑1
  TCTTGATCGGGTTAACTATTTTACTACTTACAAAG                                       >  1:7817635/1‑35
  TCTTGATCGGGTTAACTATTTTACTACTTACAAAG                                       <  1:8822410/35‑1
     TGATCGGGTTAACTATTTTACTACTTACAAAGCGG                                    >  1:3374726/1‑35
     TGATCGGGTTAACTATTTTACTACTTACAAAGCGG                                    >  1:18332120/1‑35
      GATCGGTTTAACTATTTTACTACTTACAAAGCGGG                                   >  1:8077489/1‑35
               AACTATTTTACTACTTACAAAGCGGGTGATGCTGC                          >  1:7905192/1‑35
                          TACTTACAAAGCGGGTGATGCTGCCAACTTACTGA               <  1:9673636/35‑1
                               ACAAAGCGGGTGATGCTGCCAACTTACTGATTTAG          <  1:10032007/35‑1
                                  AAGCGGGTGATGCTGCCAACTTACTGATTTAGTGT       >  1:10611184/1‑35
                                  AAGCGGGTGATGCTGCCAACTTACTGATTTAGTGT       <  1:19848572/35‑1
                                  AAGCGGGTGATGCTGCCAACTTACTGATTTAGTGT       <  1:11596160/35‑1
                                  AAGCGGGTGATGCTGCCAACTTACTGATTTAGTGT       <  1:13201916/35‑1
                                  AAGCGGGTGATGCTGCCAACTTACTCATTTAGTGT       >  1:6667373/1‑35
                                   AGCGGGTGATGCTGCCAACTTACTGATTTAGTGTA      >  1:3405457/1‑35
                                    cCGGGTGATGCTGCCAACTTACTGATTTAGTGTAT     <  1:4540517/34‑1
                                    GCGGGTGATGCTGCCAACTTACTGATTTAGTGTAT     <  1:1119458/35‑1
                                     CGGGTGATGCTGCCAACTTACTGATTTAGTGTATG    <  1:11822807/35‑1
                                     CGGGTGATGCTGCCAACTTACTGATTTAGTGTATG    >  1:18219344/1‑35
                                     CGGGTGATGCTGCCAACTTACTGATTTAGTGTATG    >  1:1731857/1‑35
                                     CGGGTGATGCTGCCAACTTACTGATTTAGTGTATG    >  1:16586982/1‑35
                                     CGGGTGATGCTGCCAACTTACTGATTTAGTGTATG    >  1:19290097/1‑35
                                     CGGGTGATGCTGCCAACTTACTGATTTAGTGTATG    >  1:7131642/1‑35
                                     CGGGTGATGCTGCCAACTTACTGATTTAGTGTATG    >  1:2547356/1‑35
                                     CGGGTGATGCTGCCAACTTACTGATTTAGTGTATG    >  1:13823059/1‑35
                                     CGGGTGATGCTGCCAACTTACTGATTTAGTGTATG    >  1:2233413/1‑35
                                       GGTGATGNTGCCAACTTACTGATTTAGTGTATGAg  >  1:14466829/1‑34
                                       GGTGATGNTGCCAACTTACTGATTTAGTGTATGAT  >  1:19533167/1‑35
                                       GGTGATGCTGCCAACTTACTTATTTAGTGTATGAT  >  1:9525093/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:9977044/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:3342801/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:3183181/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:3976790/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:3121625/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:4042801/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:4254733/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:2910515/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:4723997/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:8949017/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:9073770/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:8605412/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:8338587/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:9460107/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:7764602/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:7286625/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:7247245/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:7044081/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:7029944/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:6854881/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:6077446/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:5910542/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:5813023/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:5747701/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:5277335/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:5165118/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:505348/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:15824632/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:15540141/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:15413460/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:15156754/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:14865717/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:14828660/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:14588548/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:14483906/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:14319429/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:14041639/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:13265843/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:12922504/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:12461324/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:12286715/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:10791918/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:10294254/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:10273046/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:10235085/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:10081433/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:2827064/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:2399057/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:20395943/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:20256986/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:19947015/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:19717988/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:19605896/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:19241853/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:19031835/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:18882545/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:18785182/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:18554717/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:18039993/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:17840911/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:17072188/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:16773866/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:16719962/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:16495185/35‑1
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  >  1:16326017/1‑35
                                       GGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  1:16191765/35‑1
                                       GGTGATGCTGCAAACTTACTGATTTAGTGTATGAT  <  1:11758890/35‑1
                                       GGTGATGCTGACAACTTACTGATTTAGTGTATGAT  <  1:12500139/35‑1
                                                                          
AGTCTTGATCGGGTTAACTATTTTACTACTTACAAAGCGg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1648380‑1648342
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  REL606/3024712‑3024678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.