New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 957480 =61 (0.590)11 (0.150) 3/34 NT 20.1% coding (960/1293 nt) serS seryl‑tRNA synthetase
?REL606 = 3467034 44 (0.600)coding (963/2319 nt) yhgF predicted transcriptional accessory protein

CCATGTCGCCAGTGCAAAGGATGATTTTACGGTACGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/957520‑957480
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaggGGCCGCCATCAGCAGATCGTGCAGGTTACGGGCA  <  REL606/3467034‑3467001
                                                                           
CCATGTCGCCAGTGCAAAGTATGATTTTACGGTAC                                          >  1:1058691/1‑35
CCATGTCGCCAGTGCAAAGGATGATTTTACGGTAC                                          >  1:16948497/1‑35
CCATGTCGCCAGTGCAAAGGATGATTTTACGGTAC                                          <  1:182030/35‑1
CCATGTCGCCAGTGCAAAGGATGATTTTACGGTAC                                          >  1:15879327/1‑35
CCATGTCGCCAGTGCAAAGGATGATTTTACGGTAC                                          <  1:11792047/35‑1
CCATGTCGCCAGTGCAAAGGATGATTTTACGGTAC                                          <  1:19556294/35‑1
 CATGTCGCCAGTGCAAAGGATGATTTTACGGTACG                                         <  1:9164419/35‑1
 CATGTCGCCAGTGCAAAGGATGATTTTACGGTACG                                         <  1:18272076/35‑1
 CATGTCGCCAGTGCAAAGGATGATTTTACGGTACG                                         >  1:7795464/1‑35
  ATGTCGCCAGTGCAAAGGATGATTTTACGGTACGG                                        >  1:3109498/1‑35
  ATGTCGCCAGTGCAAAGGATGATTTTACGGTACGG                                        <  1:7718601/35‑1
   TGTCGCCAGTGCAAAGGATGATTTTACGGTACGGC                                       <  1:13035039/35‑1
   TGTCGCCAGTGCAAAGGATGATTTTACGGTACGGC                                       <  1:20430532/35‑1
   TGTCGCCAGTGCAAAGGATGATTTTACGGTACGGC                                       >  1:452668/1‑35
    GTCGCCAGTGCAAAGGATGATTTTACGGTACGGCA                                      <  1:81970/35‑1
    GTCGCCAGTGCAAAGGATGATTTTACGGTACGGCA                                      >  1:12460091/1‑35
    GTCGCCAGTGCAAAGGATGATTTTACGGTACGGCA                                      <  1:6288793/35‑1
    GTCGCCAGTGCAAAGGATGATTTTACGGTACGGCA                                      >  1:10820075/1‑35
    GTCGCCAGTGCAAAGGATGATTTTACGGTACGGCA                                      <  1:16781118/35‑1
     TCGCCAGTGCAAAGGATGATTTTACGGTACTGCAG                                     >  1:12849234/1‑35
     TCGCCAGTGCAAAGGATGATTTTACGGTACGGCAG                                     <  1:19002862/35‑1
     TCGCCAGTGCAAAGGATGATTTTACGGTACGGCAG                                     <  1:188968/35‑1
     TCGCCAGTGCAAAGGATGATTTTACGGTACGGCAG                                     <  1:12139248/35‑1
     TCGCCAGTGCAAAGGATGATTTTACGGTACGGCAG                                     <  1:20521646/35‑1
      CGCCAGTGCAAAGGATGATTTTACGGTACGGCAGG                                    <  1:20233852/35‑1
      CGCCAGTGCAAAGGATGATTTTACGGTACGGCAGG                                    <  1:17315581/35‑1
      CGCCAGTGCAAAGGATGATTTTACGGTACGGCAGG                                    >  1:12982154/1‑35
      CGCCAGTGCAAAGGATGATTTTACGGTAAGGCAGG                                    <  1:7109773/35‑1
       GCCAGTGCAAAGGATGATTTTACGGTACGGCAGGG                                   >  1:3469077/1‑35
        CCAGTGCAAAGGATGATTTTACTGTACGGCAGGGc                                  >  1:17430073/1‑34
        CCAGTGCAAAGGATGATTTTACGGTACGGCAGGGG                                  >  1:18929419/1‑35
         CAGTGCAAAGTATGATTTTACGGTACGGCAGGGGC                                 >  1:2389180/1‑35
         CAGTGCAAAGGATGATTTTACGGTACGGCAGGGcc                                 >  1:4567363/1‑33
         CAGTGCAAAGGATGATTTTACGGTACGGCAGGGGC                                 >  1:14960093/1‑35
          AGTGCAAAGGATTATTTTACGGTACGGCAGGGGCC                                >  1:2268640/1‑35
          AGTGCAAAGGATGATTTTACGGTACGGCAGGGcca                                >  1:10910113/1‑32
           GTGCAAAGGATGATTTTACGGTACGGCAGGGGCgg                               >  1:19889566/1‑33
            TGCAAAGGATGATTTTACGGTACGGCAGGGGCCGC                              >  1:11646770/1‑35
            TGCAAAGGATGATTTTACGGTACGGCAGGGGCAGC                              >  1:5439144/1‑35
             GCAAAGGATGATTTTACGGTACGGCAGGGGCCGCa                             >  1:5943146/1‑34
             GCAAAGGATGATTTTACGGTACGGCAGGGGCCGCC                             >  1:5843004/1‑35
             GCAAAGGATGATTTTACGGTACGGCAGGGGCCGCC                             >  1:5596180/1‑35
             GCAAAGGATGATTTTACGGTACGGCAGGGCCCGCa                             >  1:7786850/1‑34
              CAAAGGATGATTTTACGGTACGGCAGGGGCCGCCA                            >  1:808803/1‑35
              CAAAGGATGATTTTACGGTACGGCAGGGGCCGCCA                            >  1:574800/1‑35
               AAAGGATGATTTTACGGTACGGCAGGGGCCGCaac                           >  1:5132259/1‑32
               AAAGGATGATTTTACGGTACGGCAGGGGCCCCCAc                           >  1:1087860/1‑34
               AAAGGATGATTTTACGGTACGGCAGGGCCCGCCAc                           >  1:6469349/1‑34
                                  CGGCAGGGGCCGCCATCAGCAGATCGTGCAGGTTA        >  1:5656658/1‑35
                                   GGCAGGGGCCGCCATCAGCAGATCGTGCAGGTTAC       >  1:16572623/1‑35
                                    GCAGGGGCCGCCATCAGCAGATCGTGCAGGTTACG      >  1:10571451/1‑35
                                     cgGGGGCCGCCATCAGCAGATCGTGCAGGTTACGG     <  1:7678820/33‑1
                                     CAGGGGCCGCCATCAGCAGATCGTGCAGGTTACtg     >  1:14346288/1‑33
                                     CAGGGGCCGCCATCAGCAGATCGTGCAGGTTACGG     >  1:14336147/1‑35
                                      gGGGCCCGCCATCAGCAGATCGTGCAGGTTACGGG    <  1:15405036/34‑1
                                      gGGGCCCGCCATCAGCAGATCGTGCAGGTTACGGG    <  1:10090166/34‑1
                                      AGGGGCCGCCATCAGCATATCGTGCAGGTTACGGG    >  1:13031986/1‑35
                                      AGGGGCCGCCATCAGCAGATCGTGCAGGTTACGGG    >  1:19872111/1‑35
                                      AGGGGCCGCCATCAGCAGATCGTGCAGGTTACGGG    >  1:16760381/1‑35
                                       GGGGCCGCCATCAGCAGATCGTGCAGGTTACGGGC   >  1:6677603/1‑35
                                       GGGGCCGCCATCAGCAGATCGTGCAGGTTACGGGC   >  1:16320594/1‑35
                                       GGGGCCGCCATCAGCAGATCGTGCAGGTTACGGGC   <  1:13640429/35‑1
                                       GGGGCCGCCATCAGCAGATCGTGCAGGTTACGGGC   >  1:9609551/1‑35
                                       GGGCCCGCCATCAGCAGATCGTGCAGGTTACGGGC   <  1:4236281/35‑1
                                        GGGCCGCCATCAGCAGATCGTGCAGGTTACGGGCA  >  1:2577508/1‑35
                                        GGGCCGCCATCAGCAGATCGTGCAGGTTACGGGCA  >  1:6481313/1‑35
                                        GGGCCGCCATCAGCAGATCGTGCAGGTTACGGGCA  >  1:16508302/1‑35
                                        GGGCCGCCATCAGCAGATCGTGCAGGTTACGGGCA  >  1:13562236/1‑35
                                                                           
CCATGTCGCCAGTGCAAAGGATGATTTTACGGTACGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/957520‑957480
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaggGGCCGCCATCAGCAGATCGTGCAGGTTACGGGCA  <  REL606/3467034‑3467001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.