New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2944816 | 47 (0.460) | 22 (0.210) | 8/48 | NT | 22.6% | coding (261/660 nt) | rpiA | ribose‑5‑phosphate isomerase A |
? | REL606 | 3912264 = | 104 (1.010) | intergenic (+44/‑96) | ilvL/ilvG | ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit |
Only 100 of 116 total aligned reads displayed.
CCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAA > REL606/2944782‑2944850 | ccgcgccgcCGCCTTTGATCATTTGCATGTGGCCg > 1:10038867/1‑35 (MQ=255) cgcgccgcCGCCTTTGATCATTTGCATGTGGCCGt < 1:3327705/35‑1 (MQ=255) cgcgccgcCGCCTTTGATCATTTGCATGTGGCCGt < 1:19849668/35‑1 (MQ=255) cgcgCCGCCGCCTTTGATCATTTGCATGTGGCCGg > 1:15286121‑M1/1‑34 (MQ=255) cgcgCCGCCGCCTTTGATCATTTGCATGTGGCCGg > 1:17921565‑M1/1‑34 (MQ=255) cgcgCCGCCGCCTTTGATCATTTGCATGTGGCCGg > 1:10707136‑M1/1‑34 (MQ=255) gcgccgcCGCCTTTGATCATTTGCATGTGGCCGtt < 1:16884475/35‑1 (MQ=255) gcgcCGCCGCCTTTGATCATTTGCATGTGGCCGgg > 1:7332647‑M1/1‑33 (MQ=255) gcgcCGCCGCCTTTGATCATTTGCATGTGGCCGgg > 1:5147931‑M1/1‑33 (MQ=255) cgccgccgcCTTTGATCATTTGCATGTGGCCGggg > 1:1757689‑M1/1‑32 (MQ=255) cgccgccgcCTTTGATCATTTGCATGTGGCCGTTg < 1:18063050/35‑1 (MQ=255) gccgccgccTTTGATCATTTGCATGTGGCCGgggg > 1:8562947‑M1/1‑31 (MQ=255) gccgccgccTTTGATCATTTGCATGTGGCCGTTGa < 1:10972895/35‑1 (MQ=255) gccgccgccTTTGATCATTTGCATGTGGCCGTTGa < 1:17061976/35‑1 (MQ=255) gcccccgccTTTGATCATTTGCATGTGGCCGTTGa < 1:12382990/35‑1 (MQ=255) ccgccgccTTTGATCATTTGCATGTGGCCGTTGAt < 1:2127474/35‑1 (MQ=255) cgccgccTTTGATCATTTGCATGTGGCCGTTGAtt < 1:13663845/35‑1 (MQ=255) cgccgccTTTGATCATTTGCATGTGGCCGGTGGtt > 1:11710631/1‑35 (MQ=38) gccgccTTTGATCATTTGCATGTGGCCGggggttt > 1:9504873‑M1/1‑28 (MQ=255) gccgccTTTGATCATTTGCATGTGGCCGgggggtt > 1:2110337‑M1/1‑28 (MQ=255) ccgccTTTGATCATTTGCATGTGGCCGggggtttt > 1:10840791‑M1/1‑27 (MQ=255) ccgccTTTGATCATTTGCATGTGGCCGgggggttt > 1:15463851‑M1/1‑27 (MQ=255) cgccTTTGATCATTTGCATGTGGCCGggggttttt > 1:19485750‑M1/1‑26 (MQ=255) cgccTTTGATCATTTGCATGTGGCCGggggttttt > 1:20350798‑M1/1‑26 (MQ=255) cgccTTTGATCATTTGCATGTGGCCGgggggtttt > 1:8355659‑M1/1‑26 (MQ=255) cgccTTTGATCATTTGCATGTGGCCGTTGATTTCa < 1:5891938/35‑1 (MQ=255) cgccTTTGATCATTTGCATGTGGCCGTTGATTTCa < 1:5995613/35‑1 (MQ=255) gccTTTGATCATTTGCATGTGGCCGgggggtttgt > 1:5549709‑M1/1‑25 (MQ=255) gccTTTGATCATTTGCATGTGGCCGTTGATTTCAt < 1:3362168/35‑1 (MQ=255) gccTTTGATCATTTGCATGTGGCCGTTGATTTCAt < 1:9722417/35‑1 (MQ=255) ccTTTGATCATTTGCATGTGGCCGggggttttttt > 1:19823674‑M1/1‑24 (MQ=255) ccTTTGATCATTTGCATGTGGCCGggggttttttt > 1:1835831‑M1/1‑24 (MQ=255) ccTTTGATCATTTGCATGTGGCCGggggttttttt > 1:5891842‑M1/1‑24 (MQ=255) cTTTGATCATTTGCATGTGGCCGggggtttttttt > 1:14992251‑M1/1‑23 (MQ=255) cTTTGATCATTTGCATGTGGCCGTTGATTTCATCt < 1:15688790/35‑1 (MQ=255) cTTTGATCATTTGCATGTGGCCGTTGATTTCATCt < 1:4364235/35‑1 (MQ=255) tttGATCATTTGCATGTGGCCGggggttttttttt > 1:9734919‑M1/1‑22 (MQ=255) tttGATCATTTGCATGTGGCCGggggttttttttg > 1:10627130‑M1/1‑22 (MQ=255) tttGATCATTTGCATGTGGCCGgggggtttttttt > 1:3599198‑M1/1‑22 (MQ=255) tttGATCATTTGCATGTGGCCGgggggtttttttt > 1:12694007‑M1/1‑22 (MQ=255) tttGATCATTTGCATGTGGCCGgggggtttttttc > 1:1654571‑M1/1‑22 (MQ=255) tttGATCATTTGCATGTGGCCGgggggtttttctc > 1:4119537‑M1/1‑22 (MQ=255) tttGATCATTTGCATGTGGCCGTTGATTTCATCTg < 1:2924762/35‑1 (MQ=255) tttGATCATTTGCATGTGGCCGTTGATTTCATCTg < 1:10390680/35‑1 (MQ=255) tttGATCATTTGCATGTGGCCGTTGATTTCATCTg < 1:14396459/35‑1 (MQ=255) ttGATCATTTGCATGTGGCCGggggtttttttttc > 1:10125736‑M1/1‑21 (MQ=255) ttGATCATTTGCATGTGGCCGgggggttttttttg > 1:5128989‑M1/1‑21 (MQ=255) ttGATCATTTGCATGTGGCCGTTGATTTCATCTgc < 1:15088278/35‑1 (MQ=255) ttGATCATTTGCATGTGGCCGTTGATTTCATCTgc < 1:17569895/35‑1 (MQ=255) ttGATCATTTGCATGTGGCCGTTGATTTCATCTgc < 1:13551717/35‑1 (MQ=255) tGATCATTTGCATGTGGCCGTTGATTTCATCTgcg < 1:10231158/35‑1 (MQ=255) tGATCATTTGCATGTGGCCGGGGGTTTCTTCttgg > 1:2348551/1‑32 (MQ=16) aTCATTTGCATGTAGCCGTTGATTTCATCTGCGcc < 1:19682635/35‑1 (MQ=255) tCATTTGCATGTGGCCGTTGATTTCATCTGCGCCa < 1:2321048/35‑1 (MQ=255) cATTTGCATGTGGCCGTTGATTTCATCTGCGCCAt < 1:113363/35‑1 (MQ=255) cATGTGCAGATGGCCGTTGATTTCATCTGCGCCAt < 1:3962283/35‑1 (MQ=25) aTTTGCATGTTGCCGTTGATTTCATCTGCGCCATc > 1:15784406/1‑35 (MQ=255) aTTTGCATGTTGCCGTTGATTTCATCTGCGCCATc > 1:14161595/1‑35 (MQ=255) aTTTGCATGTGGCCGTTGATTTCATCTGCGCCATc < 1:4628651/35‑1 (MQ=255) tttGCATGTGGCCGTTGATTTCATCTGCGCCATCa < 1:4289259/35‑1 (MQ=255) ttGCATGTGGCCGTTGATTTCATCTGCGCCATCaa < 1:14796874/35‑1 (MQ=255) ttGCATGTGGCCGTTGATTTCATCTGCGCCATCaa < 1:82116/35‑1 (MQ=255) tGCATGTGGCCGTTGATTTCATCTGCGCCATCAAc < 1:14428985/35‑1 (MQ=255) tGCATGTGGCCGTTGATTTCATCTGCGCCATCAAc < 1:11044349/35‑1 (MQ=255) gCATGTGGCCGTTGATTTCATCTGCGCCATCAACg < 1:12725604/35‑1 (MQ=255) cATGTGGCCGTTGATTTCATCTGCGCCATCAACGt < 1:15865288/35‑1 (MQ=255) cATGTGGCCGTTGATTTCATCTGCGCCATCAACGt < 1:17772703/35‑1 (MQ=255) cATGTGGCCGTTGATTTCATCTGCGCCATCAACGt < 1:2555130/35‑1 (MQ=255) cATGTGGCCGTTGATTTCATCTGCGCCATCAACGt < 1:4366827/35‑1 (MQ=255) cATGTGGCCGTTGATTTCATCTGCGCCATCAACGt < 1:4395103/35‑1 (MQ=255) aTGTGGCCGTTGATTTCATCTGCGCCATCAACGTa < 1:19145831/35‑1 (MQ=255) gtgGCCGTTGATTTCATCTGCGCCATCAACGTAGa < 1:7393989/35‑1 (MQ=255) gtgGCCGTTGATTTCATCTGCGCCATCAACGTAGa < 1:9444362/35‑1 (MQ=255) gtgGCCGTTGATTTCATCTGCGCCATCAACGTAGa < 1:9621029/35‑1 (MQ=255) tgCCGTTGATTTCATATGCGCCATCAACGTAGATg < 1:17504576/34‑1 (MQ=255) gCCGTTGATTTCATCTGCGCAATCAACGTAGATGc < 1:19222691/35‑1 (MQ=255) tcggggggttttttttgaccttaaaaacataaccg < 1:19708387‑M1/34‑33 (MQ=255) ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc < 1:17947440/35‑1 (MQ=255) ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc > 1:14149701/1‑35 (MQ=255) ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc > 1:17149431/1‑35 (MQ=255) ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc > 1:16531942/1‑35 (MQ=255) ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc > 1:16096038/1‑35 (MQ=255) ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc < 1:14993352/35‑1 (MQ=255) ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc < 1:6674848/35‑1 (MQ=255) cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa > 1:11326558/1‑35 (MQ=255) cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa > 1:10850788/1‑35 (MQ=255) cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa < 1:8388891/35‑1 (MQ=255) cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa > 1:14547021/1‑35 (MQ=255) cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa > 1:10116243/1‑35 (MQ=255) cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa > 1:5319274/1‑35 (MQ=255) cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa > 1:18648049/1‑35 (MQ=255) cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa < 1:2930837/35‑1 (MQ=255) gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa < 1:15473961/35‑1 (MQ=255) gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa < 1:6290130/35‑1 (MQ=255) gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa < 1:5717417/35‑1 (MQ=255) gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa < 1:17149744/35‑1 (MQ=255) gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa > 1:4606989/1‑35 (MQ=255) gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa > 1:4508140/1‑35 (MQ=255) gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa > 1:4301887/1‑35 (MQ=255) gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa > 1:987789/1‑35 (MQ=255) | CCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAA > REL606/2944782‑2944850 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |