New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2312280 = | 75 (0.730) | 5 (0.050) | 3/44 | NT | 9.1% | intergenic (‑147/‑143) | ais/yfbE | hypothetical protein/uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
? | REL606 | = 4042610 | 31 (0.330) | intergenic (‑57/+10) | yshA/yihO | predicted outer membrane porin L/predited transporter |
Only 100 of 143 total aligned reads displayed.
ATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTC > REL606/2312246‑2312313 | ggaggccgccacccaccaggatggaaatagcggct < 1:19414125‑M1/1‑1 (MQ=255) ggaggccgccacccaccaggatggaaatagcggct < 1:7491178‑M1/1‑1 (MQ=255) ggaggccgccacccaccaggatggaaatagcggct > 1:6664507‑M1/35‑35 (MQ=255) aTGCCTCAAAATTTTGCCAAATGCAAAGCCTAAAt > 1:16277357/1‑35 (MQ=255) aTGCCTCAAAATTTTGCCAAATGCAAAGCCTAAAt < 1:13360611/35‑1 (MQ=255) aTGCCTCAAAATTTTGCCAAATGCAAAGCCTAAAt < 1:7349449/35‑1 (MQ=255) aTGCCCCAAAATTTTGCCAAATGCAAAGCCTAAAt < 1:11132232/35‑1 (MQ=255) tGCCTCAAAATTTTGCCAAATGCAAAGCGTAAATa < 1:12854021/35‑1 (MQ=255) tGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATa > 1:8410562/1‑35 (MQ=255) tGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATa < 1:6013454/35‑1 (MQ=255) tGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATa < 1:17101304/35‑1 (MQ=255) gatgccgccacccaccaggatggaaatagcggcTa < 1:3986566‑M1/2‑1 (MQ=255) gaggccgccacccaccagtatggaaatagcggcTa < 1:4657701‑M1/2‑1 (MQ=255) gaggccgccacccaccaggatggaaatagcggcTa < 1:772473‑M1/2‑1 (MQ=255) gaggccgccacccaccaggatggaaatagcggcTa > 1:8122389‑M1/34‑35 (MQ=255) gaggccgccacccaccaggatggaaatagcggcTa < 1:17172086‑M1/2‑1 (MQ=255) gagcccgccacccaccaggatggaaatagcggcTa > 1:3580627‑M1/34‑35 (MQ=255) gCCTCAAAATTTTGCCAAATGCAAAGCCTAAATaa < 1:18242514/35‑1 (MQ=255) gCCTCAAAATTTTGCCAAATGCAAAGCCTAAATaa < 1:15819314/35‑1 (MQ=255) gCCTCAAAATTTTGCCAAATGCAAAGCCTAAATaa < 1:12388730/35‑1 (MQ=255) gCCTCAAAATTTTGCCAAATGCAAAGCCTAAATaa > 1:5209629/1‑35 (MQ=255) gCCTCAAAATTTTGCCAAATGCAAAGCCTAAATaa < 1:3096713/35‑1 (MQ=255) aggccgccacccaccaggatggaaatagcggcTaa < 1:15372953‑M1/3‑1 (MQ=255) aggccgccacccaccaggatggaaatagcggcTaa < 1:9857231‑M1/3‑1 (MQ=255) aggccgccacccaccaggatggaaatagcggcTaa < 1:13918176‑M1/3‑1 (MQ=255) ggccgccacccaccaggatggaaatagcggctaaa < 1:14195482‑M1/4‑2 (MQ=255) ggccgccacccaccaggatggaaatagcggctaaa < 1:1902604‑M1/4‑2 (MQ=255) ccTCAAAATTTTGCCAAATGCAAAGCCTAAATAAg < 1:8178056/35‑1 (MQ=255) ccTCAAAATTTTGCCAAATGCAAAGCCTAAATAAg < 1:1852143/35‑1 (MQ=255) cTCAAAATTTTGCCGAATGCAAAGCCTAAATAAGa < 1:6227644/35‑1 (MQ=255) cTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGa > 1:9403679/1‑35 (MQ=255) cTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGa < 1:9223405/35‑1 (MQ=255) cTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGa < 1:8890937/35‑1 (MQ=255) cTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGa < 1:6554984/35‑1 (MQ=255) cTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGa < 1:15234319/35‑1 (MQ=255) aaaaTTTTGCCAAATGCAAAGCCTAAATAAGaaaa < 1:17761119/35‑1 (MQ=255) aaaaTTTTGCCAAATGCAAAGCCTAAATAAGaaaa < 1:6087211/35‑1 (MQ=255) ccacccaccaggatggaaatagcggcTAAAaaaaa < 1:13869675‑M1/9‑1 (MQ=255) aaaTTTTGCCAAATGCAAAGCCTAAATAAGaaaaa > 1:8633910/1‑35 (MQ=255) aaaTTTTGCCAAATGCAAAGCCTAAATAAGaaaaa < 1:8658487/35‑1 (MQ=255) cacccaccaggatggaaatagcggcTAAAaaaaaa < 1:17227563‑M1/10‑1 (MQ=255) aaTTTTGCCAAATGCAAAGCCTAAATAAGaaaaaa < 1:13626909/35‑1 (MQ=255) acccaccaggatggaaatagcggcTAAaaaaaaaa < 1:8886485‑M1/11‑2 (MQ=255) aTTTTGCCAAATGCAAAGCCTAAATAAGAAAAAat > 1:1411465/1‑35 (MQ=255) aTTTTGCCAAATGCAAAGCCTAAATAAGAAAAAat < 1:6952202/35‑1 (MQ=255) aTTTTGCCAAATGCAAAGCCTAAATAAGAAAAAat > 1:6680100/1‑35 (MQ=255) ttttGCCAAATGCAAAGCCTAAATAAGAAAAAata < 1:6741809/35‑1 (MQ=255) ttttGCCAAATGCAAAGCCTAAATAAGAAAAAata > 1:1297865/1‑35 (MQ=255) tttGCCAAATGCAAAGCCTAAATAAGAAAAAatat < 1:13476130/35‑1 (MQ=255) ttGCCAAATGCAAAGCCTAAATAAGAAAAAAtata > 1:18580007/1‑35 (MQ=255) tGCCAAATGCAAAGCCTAAATAAGAAAAAATATaa < 1:14666025/35‑1 (MQ=255) tGCCAAATGCAAAGCCTAAATAAGAAAAAATATaa < 1:2274170/35‑1 (MQ=255) gCCAAATGCAAAGCCTAAATAAGAAAAAATATaaa < 1:5190412/35‑1 (MQ=255) gCCAAATGCAAAGCCTAAATAAGAAAAAATATaaa < 1:4766105/35‑1 (MQ=255) gCCAAATGCAAAGCCTAAATAAGAAAAAATATaaa < 1:10142246/35‑1 (MQ=255) gCCAAATGCAAAGCCTAAATAAGAAAAAATATaaa < 1:197576/35‑1 (MQ=255) gCCAAATGCAAAGCCTAAATAAGAAAAAATATaaa < 1:16441711/35‑1 (MQ=255) gCCAAATGCAAAGCCTAAATAAGAAAAAATATaaa < 1:17940254/35‑1 (MQ=255) ccAAATGCAAAGCCTAAATAAGAAAAAATATaaaa > 1:10196513/1‑35 (MQ=255) ccAAATGCAAAGCCTAAATAAGAAAAAATATaaaa < 1:14567041/35‑1 (MQ=255) ccAAATGCAAAGCCTAAATAAGAAAAAATATaaaa > 1:19678959/1‑35 (MQ=255) ccAAATGCAAAGCCTAAATAAGAAAAAATATaaaa > 1:6609837/1‑35 (MQ=255) cAAATGCAAAGCCTAAATAAGAAAAAATATaaaaa < 1:19791507/35‑1 (MQ=255) cAAATGCAAAGCCTAAATAAGAAAAAATATaaaaa < 1:7962007/35‑1 (MQ=255) cAAATGCAAAGCCTAAATAAGAAAAAATATaaaaa < 1:5056816/35‑1 (MQ=255) aggatggaaatagcggcTAAAAAAAAATATaaaaa < 1:2680590‑M1/18‑1 (MQ=255) aaaTGCAAAGCCTAAATAAGAAAAAATATAAAAAt > 1:16679718/1‑35 (MQ=255) aaTGCAAAGCCTAAATAAGAAAAAATATAAAAAtt < 1:20507109/35‑1 (MQ=255) aaTGCAAAGCCTAAATAAGAAAAAATATAAAAAtt > 1:19654163/1‑35 (MQ=255) aTGCAAAGCCTAAATAAGAAAAAATATAAAAAttt < 1:3143081/35‑1 (MQ=255) aTGCAAAGCCTAAATAAGAAAAAATATAAAAAttt < 1:5975313/35‑1 (MQ=255) tGCAAAGCCTAAATAAGAAAAAATATAAAAATTTc > 1:4960216/1‑35 (MQ=255) gCAAAGCCTAAATAAGAAAAAATATAAAAATTTCa < 1:8301050/35‑1 (MQ=255) gCAAAGCCTAAATAAGAAAAAATATAAAAATTTCa < 1:19526938/35‑1 (MQ=255) aaaGCCTAAATAAGAAAAAATATAAAAATTTCAat < 1:18414358/35‑1 (MQ=255) aaaGCCTAAATAAGAAAAAATATAAAAATTTCAat > 1:15236394/1‑35 (MQ=255) aaGCCTAAATAAGAAAAAATATAAAAATTTCAata < 1:18921318/35‑1 (MQ=255) aaGCCTAAATAAGAAAAAATATAAAAATTTCAata > 1:17531508/1‑35 (MQ=255) aGCCTAAATAAGAAAAAATATAAAAATTTCAatat < 1:14525956/35‑1 (MQ=255) aGCCTAAATAAGAAAAAATATAAAAATTTCAatat > 1:7871596/1‑35 (MQ=255) aGCCTAAATAAGAAAAAATATAAAAATTTCAatat < 1:15760062/35‑1 (MQ=255) aGCCTAAATAAG‑AAAAATATAAAAATTTCAATAtt < 1:17770475/35‑1 (MQ=25) gCCTAAATAAGAAAAAATATAAAAATTTCAATAtt < 1:18292557/35‑1 (MQ=255) gCCTAAATAAGAAAAAATATAAAAATTTCAATAtt < 1:19061476/35‑1 (MQ=255) gCCTAAATAAGAAAAAATATAAAAATTTCAATAtt > 1:1188242/1‑35 (MQ=255) gCCTAAATAAGAAAAAATATAAAAATTTCAATAtt > 1:12175951/1‑35 (MQ=255) ccTAAATAAGAAAAAATATAAAAATTTCAATAttt < 1:4407475/35‑1 (MQ=255) cTAAATAAGAAAAAATATAAAAATTTCAATATTTa < 1:5807479/35‑1 (MQ=255) cTAAATAAGAAAAAATATAAAAATTTCAATATTTa < 1:17455247/35‑1 (MQ=255) cTAAATAAGAAAAAATATAAAAATTTCAATATTTa > 1:398455/1‑35 (MQ=255) cTAAATAAGAAAAAATATAAAAATTTCAATATTTa > 1:3349786/1‑35 (MQ=255) tAAATAAGAAAAAATATAAAAATTTCAATATTTAc < 1:9743886/35‑1 (MQ=255) tAAATAAGAAAAAATATAAAAATTTCAATATTTAc < 1:14245/35‑1 (MQ=255) aaaTAAGAAAAAATATAAAAATTTCAATATTTACg < 1:12502630/35‑1 (MQ=255) aaaTAAGAAAAAATATAAAAATTTCAATATTTACg < 1:8562525/35‑1 (MQ=255) aaaTAAGAAAAAATATAAAAATTTCAATATTTACg > 1:10278235/1‑35 (MQ=255) aaTAAGAAAAAATATAAAAATTTCAATATTTACGt > 1:7808042/1‑35 (MQ=255) aaTAAGAAAAAATATAAAAATTTCAATATTTACGt < 1:18636656/35‑1 (MQ=255) aTAAGAAAAAATATAAAAATTTCAATATTTACGTc > 1:11140282/1‑35 (MQ=255) aTAAGAAAAAATATAAAAATTTCAATATTTACGTc < 1:16849172/35‑1 (MQ=255) | ATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTC > REL606/2312246‑2312313 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |