New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 32485 =59 (0.570)7 (0.070) 6/46 NT 12.4% coding (40/822 nt) dapB dihydrodipicolinate reductase
?REL606 = 671859 42 (0.430)coding (1118/1539 nt) lnt apolipoprotein N‑acyltransferase

CGCAGTAAGCTCAATACCATTTACCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACAT  >  REL606/671825‑671893
                                  |                                  
cGCAGTAAGCTCAATACCATTTACCGACAgcggcg                                    >  1:6794611/1‑35 (MQ=255)
cGCAGTAAGCTCAATACCATTTACCGACAgcggcg                                    >  1:19159513/1‑35 (MQ=255)
cGCAGTAAGCTCAATACCATTTACCGACAgcggcg                                    >  1:20238870/1‑35 (MQ=255)
 gCAGTAAGCTCAATACCATTTACCGACAGCGGCGg                                   <  1:16832207‑M2/35‑2 (MQ=255)
 gCAGTAAGCTCAATACCATTTACCGACAGCGGCGg                                   <  1:2130238‑M2/35‑2 (MQ=255)
  cAGTAAGCTCAATACCATTTACCGACAGCGGCGgg                                  <  1:1424975‑M2/35‑3 (MQ=255)
  cAGTAAGCTCAATACCATTTACCGACAGCGGCGgg                                  <  1:15587864‑M2/35‑3 (MQ=255)
  cAGTAAGCTCAATACCATTTACCGACAGCGGCGgg                                  <  1:8048419‑M2/35‑3 (MQ=255)
   aGTAAGCTCAATACCATTTACCGACAGCGGCGggg                                 <  1:3347716‑M2/35‑4 (MQ=255)
   aGTAAGCTCAATACCATTTACCGACAGCGGCGggg                                 <  1:4410801‑M2/35‑4 (MQ=255)
   aGTAAGCTCAATACCATTTACCGACAGCGGCGggg                                 <  1:11484819‑M2/35‑4 (MQ=255)
   aGTAAGCTCAATACCACTTACCGACAGCggcggcg                                 >  1:17371057/1‑34 (MQ=38)
    gTAAGCTCAATACCATTTACCGACAGCGGCGgggg                                <  1:8172436‑M2/35‑5 (MQ=255)
    gTAAGCTCAATACCATTTACCGACAGCGGCGgggg                                <  1:18056523‑M2/35‑5 (MQ=255)
    gTAAGCTCAATACCATTTACCGACAGCGGCGgggg                                <  1:5808420‑M2/35‑5 (MQ=255)
    gTAAGCTCAATACCATTTACCGACAGCGGCGggcg                                <  1:1969855‑M2/35‑5 (MQ=255)
     tAAGCTCAATACCATTTACCGACAGCGGCGggggg                               <  1:2596441‑M2/35‑6 (MQ=255)
     tAAGCTCAATACCATTTACCGACAGCGGCGggggg                               <  1:15670573‑M2/35‑6 (MQ=255)
     tAAGCTCAATACCATTTACCGACAGCGGCGggggg                               <  1:8067245‑M2/35‑6 (MQ=255)
      aaGCTCAATACCATTTACCGACAGCTGCGGCTggg                              >  1:18982244/1‑34 (MQ=255)
      aaGCTCAATACCATTTACCGACAGCGGCGgggggg                              <  1:4398186‑M2/35‑7 (MQ=255)
      aaGCTCAATACCATTTACCGACAGCGGCGgggggg                              <  1:12654929‑M2/35‑7 (MQ=255)
      aaGCTCAATACCATTTACCGACAGCGGCGgggggg                              <  1:5144790‑M2/35‑7 (MQ=255)
       aGCTCAATACCATTTACAGACAGCGGCGGCTGGat                             <  1:4019387/35‑1 (MQ=255)
        gCTCAATACCATTTACCGACAGCGGCGgggggggg                            <  1:8780359‑M2/35‑9 (MQ=255)
         cTCAATACCATTTACCGACAGCTGCGGCTGGatat                           >  1:20114056/1‑35 (MQ=255)
         cTCAATACCATTTACCGACAGCGGCGgggggggtg                           <  1:5856269‑M2/35‑10 (MQ=255)
         cTCAATACCATTTACCGACAGCGGCGggggggggt                           <  1:11104106‑M2/35‑10 (MQ=255)
         cTCAATACCATTTACCGACAGCGGCGggggggggt                           <  1:16635157‑M2/35‑10 (MQ=255)
          tCAATACCATTTACCGACAGCGGCGggggggggta                          <  1:1329690‑M2/35‑11 (MQ=255)
          ccAAAACCATTCCCCGACAGCGGCGGCTGGatata                          <  1:3030577/34‑1 (MQ=25)
          acAATCCCATTTCCCGACAGCGGCGGCTGGatata                          <  1:5836948/34‑1 (MQ=37)
          aaaaTCCCATTTCCCGACAGCGGCGGCTGGatata                          <  1:12227260/33‑1 (MQ=25)
           cAATACCATTTACCGACAGCGGCGggggggggtat                         <  1:16167329‑M2/35‑12 (MQ=255)
           cAATACCATTTACCGACAGCGGCGggggggggtat                         <  1:2312813‑M2/35‑12 (MQ=255)
            aaTCCCATTCCCCGACAGCGGCGGCTGGATATATg                        <  1:14826788/35‑1 (MQ=25)
            aaTACCATTTACCGACAGCGGCGGGTGGggatata                        >  1:7428737/1‑34 (MQ=25)
             atcccATTTCCCGACAGCGGCGGCTGGATATATgg                       <  1:5436060/32‑1 (MQ=37)
             aTACAATTCCCCGACAGCGGCGGCTGGATATATgg                       <  1:11731667/35‑1 (MQ=25)
              tcccATTTCCCGACAGCGGCGGCTGGATATATGGc                      <  1:5157688/33‑1 (MQ=38)
              tcccATTTCCCGACAGCGGCGGCTGGATATATGGc                      <  1:8631756/33‑1 (MQ=38)
              tACCATTTACCGACAGCGGCGggggggggtatggg                      <  1:11745706‑M2/35‑15 (MQ=255)
               aCCATTTACCGACAGCGGCGggggggggtatgggc                     <  1:6016835‑M2/35‑16 (MQ=255)
                ccATTTCCCGACAGCGGCGGCTGGATATATGGccc                    <  1:948929/35‑1 (MQ=255)
                ccATTTACCGACAGCGGCGggggggggtatgggcc                    <  1:2157608‑M2/35‑17 (MQ=255)
                ccATTTACCGACAGCGGCGGGGGGGGATATGGctt                    >  1:13364735/1‑33 (MQ=16)
                 cttttCCCGACAGCGGCGGCTGGATATATGGCCCa                   <  1:19123565/33‑1 (MQ=38)
                 cATTTCCCGACAGCGGCGGCTGGATATATGGCCCa                   <  1:12965922/35‑1 (MQ=255)
                 cATTTCCCGACAGAGGCGGCTGGATATATGGCCCa                   <  1:8374653/35‑1 (MQ=37)
                 cATTTACCGACAGCGGCGggggggggtatgggccg                   <  1:1327696‑M2/35‑18 (MQ=255)
                   tttCCCGACAGCGGCGGCTGGATATATGGCCCACg                 <  1:5358938/35‑1 (MQ=255)
                   tttCCCGACAGCGGCGGCTGGATATATGGCCCACg                 <  1:17257210/35‑1 (MQ=255)
                   tttCCCGACAGCGGCGGCTGGATATATGGCCCACg                 <  1:20511606/35‑1 (MQ=255)
                   tttCCCGACAGCGGCGGCTGGATATATGGCCCACg                 <  1:17835149/35‑1 (MQ=255)
                   tttCCCGACAGCGGCGGCTGGATATATGGCCCACg                 <  1:11795838/35‑1 (MQ=255)
                   ttcaCCGACAGCGGCGGCTGGATATATGGCCCACg                 <  1:865461/32‑1 (MQ=255)
                    ttcccGCCAGCGGCGGCTGGATATATGGCCCACgg                <  1:18918536/32‑1 (MQ=37)
                    ttcccGACAGCGGCGGCTGGATATATGGCCCACgg                <  1:8002744/32‑1 (MQ=255)
                    tgcccGACAGCGGAGGCTGGATATATGGCCCACgg                <  1:12109731/32‑1 (MQ=37)
                     ccccGACAGCGGCGGCTGGATATATGGCCCACGGc               <  1:5971520/33‑1 (MQ=255)
                      cccGACAGCGGCGGCTGGATATATGGCCCACGGCt              <  1:20134962/34‑1 (MQ=255)
                      cccGACAGCGGCGGCTGGATATATGGCCCACGGCt              <  1:13522609/34‑1 (MQ=255)
                       ccaaCAGCGGCGGCTGGATATATGGCCCACGGCTg             <  1:17647164/32‑1 (MQ=255)
                       ccGGCAGCGGCGGCTGGATATATGGCCCACGGCTg             <  1:19207503/35‑1 (MQ=255)
                       ccGACAGCGGCGGCTGGATATATGGCCCACGGCTg             <  1:18117790/35‑1 (MQ=255)
                       ccGACAGCGGCGGCTGGATATATGGCCCACGGCTg             <  1:13182553/35‑1 (MQ=255)
                        cgccAGCGGCGGCTGGATATATGGACCACGGCTGa            <  1:1655725/32‑1 (MQ=38)
                        cGACAGCGGCGGCTGGATATATGGCCCACGGCTGa            <  1:19474491/35‑1 (MQ=255)
                        cGACAGCGGCGGCTGGATATATGGCCCACGGCTGa            <  1:17127518/35‑1 (MQ=255)
                         gccAGCGGCGGCTGGATATATGGCCCACGGCTGaa           <  1:13197259/33‑1 (MQ=255)
                         gACAGCGGCGGCTGGATATATGGCCCACGGCTGaa           <  1:12299687/35‑1 (MQ=255)
                            aGCGGCGGCTGGATATATGGCCCACGGCTGAacga        <  1:7479784/35‑1 (MQ=255)
                             gcggcgGCTGGATATATGGCCCACGGCTGAacgac       <  1:3585919/35‑1 (MQ=255)
                             gcggcgGCTGGATATATGGCCCACGGCTGAacgac       <  1:3459742/35‑1 (MQ=255)
                             gcggcgGCTGGATATATGGCCCACGGCTGAacgac       <  1:9467718/35‑1 (MQ=255)
                             gcggcgGCTGGATATATGGCCCACGGCTGAacgac       <  1:70537/35‑1 (MQ=255)
                              cggcggCTGGATATATGGCCCACGGCTGAacgacg      <  1:708974/35‑1 (MQ=255)
                              cggcggCTGGATATATGGCCCACGGCTGAacgacg      <  1:7603215/35‑1 (MQ=255)
                              cggcggCTGGATATATGGCCCACGGCTGAacgacg      <  1:15573658/35‑1 (MQ=255)
                              cggcggCTGGATATATGGCCCACGGCTGAacgacg      <  1:12442082/35‑1 (MQ=255)
                              cggcggCTGGATATATGGCCCACGGCTGAacgacg      <  1:10960248/35‑1 (MQ=255)
                               cgcggcTGGATATATGGCCCACGGCTGAAcgacga     <  1:15385466/34‑1 (MQ=255)
                                gcgggggggcttatgggccgccagttgattcaggc    >  1:10769223‑M2/1‑3 (MQ=255)
                                gcggcTGGATATATGGCCCACGGCTGAACgacgac    <  1:9941028/35‑1 (MQ=255)
                                gcggcTGGATATATGGCCCACGGCTGAACgacgac    <  1:3887910/35‑1 (MQ=255)
                                gcggcTGGATATATGGCCCACGGCTGAACgacgac    <  1:380029/35‑1 (MQ=255)
                                gcggcTGGATATATGGCCCACGGCTGAACgacgac    <  1:1682616/35‑1 (MQ=255)
                                gcggcTGGATATATGGCCCACGGCTGAACgacgac    <  1:12880639/35‑1 (MQ=255)
                                 cgggggggcgtatgggccgccagttgattcaggcg   >  1:6565032‑M2/1‑2 (MQ=255)
                                 cggcTGGATATATGGCCCACGGCTGAACGACGACa   <  1:7279155/35‑1 (MQ=255)
                                 cggcTGGATATATGGCCCACGGCTGAACGACGACa   <  1:2633551/35‑1 (MQ=255)
                                 cggcTGGATATATGGCCCACGGCTGAACGACGACa   <  1:16144284/35‑1 (MQ=255)
                                 cggcTGGATATATGGCCCAAGGCTGAACGACGACa   <  1:20128076/35‑1 (MQ=255)
                                  ggcTGGATATATGGCCCACGGCTGAACGACGACAt  >  1:2878132/1‑35 (MQ=255)
                                  ggcTGGATATATGGCCCACGGCTGAACGACGACAt  >  1:1748300/1‑35 (MQ=255)
                                  ggcTGGATATATGGCCCACGGCTGAACGACGACAt  <  1:9836251/35‑1 (MQ=255)
                                  |                                  
CGCAGTAAGCTCAATACCATTTACCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACAT  >  REL606/671825‑671893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.