New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3630716NA (NA)79 (0.770) 38/48 NT NA intergenic (‑171/‑305) ldrD/yhjV toxic polypeptide, small/predicted transporter
?REL606 = 3652533 NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 159 total aligned reads displayed.

GGGATAAAGCCCCCGCAACATTGCGCCTCACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3630683‑3630716
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  <  REL606/3652533‑3652500
                                                                    
GGGATAAAGCCCCCGCAACATTGCGCCTCACCGGT                                   >  1:17522556/1‑35
 GGATAAAGCCCCCGCAACATTGCGCCTCACCGGTG                                  <  1:18823503/35‑1
 GGATAAAGCCCCCGCAACATTGCGCCTCACCGGTG                                  <  1:12020950/35‑1
 GGATAAAGCCCCCGCAACATTGCGCCTCACCGGTG                                  >  1:7903995/1‑35
 GGATAAAGCCCCCGCAACATTGCGCCTCACCGGTG                                  <  1:18221229/35‑1
  GATAAAGCCCCCGCAACATTGCGCCTCACCGGTGT                                 <  1:17546343/35‑1
   ATAAAGCCCCCTCAACATTGCGCCTCACCGGTGTA                                >  1:15338651/1‑35
   ATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTA                                >  1:8970165/1‑35
    TAAAGCCCCCGCAACATTGCGCCTCACCGGTGTAC                               <  1:14714327/35‑1
    TAAAGCCCCCGCAACATTGCGCCTCACCGGTGTAC                               >  1:14888027/1‑35
    TAAAGCCCCCGCAACATTGCGCCTCACCGGTGTAC                               <  1:9305171/35‑1
     AAAGCCCCCGCAACATTGCGCCTCACCGGTGTACT                              >  1:20574493/1‑35
      AAGCCCCCGCAACATTGCGCCTCACCGGTGTACTG                             <  1:197613/35‑1
       AGCCCCCGCAACATTGCGCCTCACCGGTGTACTGA                            >  1:11036316/1‑35
       AGCCCCCGCAACATTGCGCCTCACCGGTGTACTGA                            >  1:9451475/1‑35
       AGCCCCCGCAACATTGCGCCTCACCGGTGTACTGA                            <  1:2048212/35‑1
         CCCCCGCAACATTGCGCCTCACCGGTGTACTGACC                          >  1:8050591/1‑35
         CCCCCGCAACATTGCGCCTCACCGGTGTACTGACC                          <  1:7669899/35‑1
          CCCCGCAACATTGCGCCTCACCGGTGTACTGACCC                         <  1:18120896/35‑1
           CCCGCAACATTGCGCCTCACCGGTGTACTGACCCC                        <  1:18862912/35‑1
            CCGCAACATTGCGGCTCACCGGTGTACTGACCCCA                       <  1:1417093/35‑1
            CCGCAACATTGCGCCTCACCGGTGTACTGACCCCA                       <  1:11160538/35‑1
            CCGCAACATTGCGCCTCACCGGTGTACTGACCCCA                       >  1:10456531/1‑35
            CCGCAACATTGCGCCTCACCGGTGTACTGACCCCA                       <  1:336892/35‑1
             CGCAACATTGCGCCTCACCGGTGTACTGACCCCAA                      >  1:3153100/1‑35
             CGCAACATTGCGCCTCACCGGTGTACTGACCCCAA                      <  1:13773721/35‑1
             CGCAACATTGCGCCTCACCGGTGTACTGACCCCAA                      >  1:12361000/1‑35
              GCAACATTGCGCCTCACCGGTGTACTGACCCCAAA                     >  1:11030316/1‑35
              GCAACATTGCGCCTCACCGGTGTACTGACCCCAAA                     <  1:9520582/35‑1
               CAACATTGCGCCTCACCGGTGTACTGACCCCAAAA                    <  1:15163159/35‑1
               CAACATTGCGCCTCACCGGTGTACTGACCCCAAAA                    >  1:13540168/1‑35
                AACATTGCGCCTCACCGGTGTACTGACCCCAAAca                   >  1:5957026/1‑33
                AACATTGCGCCTCACCGGTGTACTGACCCCAAAAA                   >  1:6456120/1‑35
                AACATTGCGCCTCACCGGTGTACTGACCCCAAAAA                   <  1:1066042/35‑1
                 ACATTGCGCCTCACCGGTGTACTGACCCCAAAAAG                  >  1:7695488/1‑35
                  CATTGCGCCTCACCGGTGTACTGACCCCAAAAAGT                 >  1:20600752/1‑35
                  CATTGCGCCTCACCGGTGTACTGACCCCAAAAAGT                 >  1:12425874/1‑35
                  CATTGCGCCTCACCGGTGTACTGACCCCAAAAAGT                 >  1:10616795/1‑35
                   ATTGCGCCTCACCGGTGTACTGACCCCGAAAAGTT                >  1:3481277/1‑35
                    TTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTG               >  1:3682977/1‑35
                    TTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTG               >  1:19235120/1‑35
                     TGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGG              >  1:10289396/1‑35
                     TGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGG              <  1:3940048/35‑1
                      GCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGA             <  1:17063497/35‑1
                      GCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGA             <  1:7194591/35‑1
                      GCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGA             <  1:4346843/35‑1
                       CGCCTCACCGGTGTACTGACCCCAAAAAGTTGGAC            >  1:19062275/1‑35
                       CGCCTCACCGGTGTACTGACCCCAAAAAGTTGGAC            <  1:15956352/35‑1
                       CGCCTCACCGGTGTACTGACCCCAAAAAGTTGGAC            >  1:14469719/1‑35
                       CGCCTCACCGGTGTACTGACCCCAAAAAGTTGGAC            <  1:3173479/35‑1
                        GCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA           <  1:854119/35‑1
                        GCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA           >  1:13181259/1‑35
                        GCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA           >  1:6262417/1‑35
                        GCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA           >  1:30704/1‑35
                        GCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA           <  1:2199327/35‑1
                         CCTCACCGGTGTACTGACCCCAAAAAGTTGGACAG          >  1:17197938/1‑35
                         CCTCACCGGTGTACTGACCCCAAAAAGTTGGACAG          >  1:10404542/1‑35
                         CCTCACCGGTGTACTGACCCCAAAAAGTTGGACAG          <  1:13076825/35‑1
                          CTCACCGGTGTACTGACCCCAAAAAGTTGGACAGT         <  1:4438446/35‑1
                           TCACCGGTGTACTGACCCCAAAAAGTTGGACAGTT        >  1:18170151/1‑35
                           TCACCGGTGTACTGACCCCAAAAAGTTGGACAGTT        <  1:9412863/35‑1
                            CACCGGTGTACTGACCCCAAAAAGTTGGACAGTTA       >  1:18727517/1‑35
                             ACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAA      >  1:2275036/1‑35
                             ACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAA      >  1:19087090/1‑35
                              tttGTGTACTGACCCCAAAAAGTTGGACAGTTAAA     <  1:1071489/32‑1
                              gttGTGTACTGACCCCAAAAAGTTGGACAGTTAAA     <  1:8664096/32‑1
                              gttGTGTACTGACCCCAAAAAGTTGGACAGTTAAA     <  1:20248141/32‑1
                              gttGTGTACTGACCCCAAAAAGTTGGACAGTTAAA     >  1:13468045/4‑35
                              catGTGTACTGACCCCAAAAAGTTGGACAGTTAAA     >  1:2052078/4‑35
                              catGTGTACTGACCCCAAAAAGTTGGACAGTTAAA     >  1:8083656/4‑35
                              catGTGTACTGACCCCAAAAAGTTGGACAGTTAAA     >  1:6629350/4‑35
                              caGGTGTACTGACCCCAAAAAGTTGGACAGTTAAA     <  1:1657914/33‑1
                              agcGTGTACTGACCCCAAAAAGTTGGACAGTTAAA     <  1:11286782/32‑1
                              agcGTGTACTGACCCCAAAAAGTTGGACAGTTAAA     >  1:15652113/4‑35
                              agcGTGTACTGACCCCAAAAAGTTGGACAGTTAAA     <  1:10312453/32‑1
                              CCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAA     <  1:3993785/35‑1
                               ttGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC    <  1:20185620/33‑1
                               ttGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC    <  1:2551249/33‑1
                               gcGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC    <  1:6176090/33‑1
                               gcGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC    >  1:13924508/3‑35
                               ctGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC    <  1:6072824/33‑1
                               CGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC    <  1:3044138/35‑1
                                tGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA   <  1:14232089/34‑1
                                tGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA   <  1:6621723/34‑1
                                tGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA   <  1:15758566/34‑1
                                tGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA   <  1:15360695/34‑1
                                cGTGTACTGACCGCAAAAAGTTGGACAGTTAAACA   <  1:5138524/34‑1
                                cGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA   >  1:3998838/2‑35
                                cGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA   <  1:13672352/34‑1
                                GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA   >  1:18385306/1‑35
                                GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA   <  1:7417658/35‑1
                                GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA   <  1:6550470/35‑1
                                GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA   >  1:15908107/1‑35
                                 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  <  1:11733214/35‑1
                                 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  >  1:16988413/1‑35
                                 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  >  1:19322932/1‑35
                                 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  >  1:8863126/1‑35
                                 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  >  1:6873165/1‑35
                                 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  <  1:1942469/35‑1
                                 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  >  1:14527347/1‑35
                                                                    
GGGATAAAGCCCCCGCAACATTGCGCCTCACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3630683‑3630716
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  <  REL606/3652533‑3652500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.