New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1349554 = | 66 (0.640) | 10 (0.130) | 4/36 | NT | 18.6% | intergenic (‑146/+222) | fabI/ycjD | enoyl‑(acyl carrier protein) reductase/hypothetical protein |
? | REL606 | = 3574369 | 38 (0.490) | coding (1504/2043 nt) | prlC | oligopeptidase A |
GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1349592‑1349554 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCTG < REL606/3574369‑3574336 GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCT > 1:16149026/1‑35 GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCT > 1:10857580/1‑35 GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCT > 1:17310176/1‑35 GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCT > 1:16335111/1‑35 AGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTG > 1:4392314/1‑35 AGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTG > 1:7322736/1‑35 GAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGC > 1:18316882/1‑35 GAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGC > 1:5155066/1‑35 GAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGC > 1:17577495/1‑35 GAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGC > 1:16598585/1‑35 AGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCC > 1:10753721/1‑35 AGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCC > 1:12689574/1‑35 GGGTTAGGGTGATGGGAAAAGCGCCCCCCCTGCCG > 1:4555014/1‑35 GGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCG > 1:6186598/1‑35 ggAGCGCCCCCCCTGCCGAGTCAGTTTATGGAAAA < 1:13773806/33‑1 gacGCGCCCCCCCTGCCGAGTCAGTTTATGGAAAA < 1:1623841/32‑1 cCGCCCCCCCTGCCGAGTCAGTTTATGGAAAACTG < 1:11568642/34‑1 GCGCCCCCCCTGCCGAGTCAGTTTATGGAAAACTG < 1:7817516/35‑1 ccgCCCCCCTGCCGAGTCAGTTTATGGAAAACTGG < 1:13828613/32‑1 CGCCCCCCCTGCCGAGTCAGTTTATGGAAAACTGG < 1:8172754/35‑1 cCCCCCCCTGCCGAGTCAGTTTATGGAAAACTGGT < 1:15511621/34‑1 GCCCCCCCTGCCGAGTCAGTTTATGGAAAACTGGT < 1:17329054/35‑1 GCCCCCCCTGCCGAGTCAGTTTATGGAAAACTGGT < 1:764330/35‑1 ccaCCCCTGCCGAGTCAGTTTATGGAAAACTGGTG < 1:14999080/32‑1 CCCCCCCTGCCGAGTCAGTTTATGGAAAACTGGTG < 1:3555004/35‑1 CCCCCCCTGCCGAGTCAGTTTATGGAAAACTGGTG < 1:11749451/35‑1 CCCCCCTGCCGAGTCAGTTTATGGAAAACTGGTGC < 1:2716381/35‑1 CCCCCCTGCCGAGTCAGTTTATGGAAAACTGGTGC < 1:754006/35‑1 CCCCCTGCCGAGTCAGTTTATGGAAAACTGGTGCT < 1:19629439/35‑1 CCCCCTGCCGAGTCAGTTTATGGAAAACTGGTGCT < 1:8467093/35‑1 CCCCTGCCGAGTCAGTTTATGGAAAACTGGTGCTG < 1:4121101/35‑1 CCCTGCCGAGTCAGTTTATGGAAAACTGGTGCTGG < 1:4546702/35‑1 CCCTGCCGAGTCAGTTTATGGAAAACTGGTGCTGG < 1:9237841/35‑1 CCCTGCCGAGTCAGTTTATGGAAAACTGGTGCTGG < 1:10632633/35‑1 CCTGCCGAGTCAGTTTATGGAAAACTGGTGCTGGG < 1:15692893/35‑1 CTGCCGAGTCAGTTTATGGAAAACTGGTGCTGGGA < 1:20057103/35‑1 CTGCCGAGTCAGTTTATGGAAAACTGGTGCTGGGA < 1:11582145/35‑1 CTGCCGAGTCAGTTTATGGAAAACTGGTGCTGGGA > 1:16123231/1‑35 TGCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAG < 1:8262611/35‑1 TGCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAG < 1:12985701/35‑1 GCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGC < 1:13374989/35‑1 GCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGC > 1:1413067/1‑35 GCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGC < 1:15582757/35‑1 GCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGC > 1:335257/1‑35 GCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGC > 1:20278243/1‑35 CCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCC > 1:15584467/1‑35 CCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCC < 1:3605327/35‑1 CCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCC > 1:11599565/1‑35 CGAGTCAGTTTATGGAAAACTGGTGCTGGGATCCT > 1:9295601/1‑35 CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCT < 1:4473084/35‑1 CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCT < 1:16756993/35‑1 CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCT < 1:14458484/35‑1 CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCT > 1:17175787/1‑35 CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCT > 1:12819623/1‑35 CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCT < 1:8409355/35‑1 CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGACT > 1:315647/1‑35 GAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCTG < 1:594455/35‑1 GAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCTG < 1:17822143/35‑1 GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1349592‑1349554 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCTG < REL606/3574369‑3574336 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |