New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1495445 =79 (0.770)10 (0.110) 4/44 NT 13.0% coding (648/1500 nt) ansP L‑asparagine transporter
?REL606 3277263 = 61 (0.650)coding (763/987 nt) yrbH D‑arabinose 5‑phosphate isomerase

Only 100 of 147 total aligned reads displayed.

CCTGAATCAACACCAGCGCAGGCAGCAAACCGTGGGGGAAGAAGCCGCCATTATCGGTGATTAAATGAA  >  REL606/1495411‑1495479
                                  |                                   
cgcccatatcgaagacacggcgtaaatcaccgtcg                                     >  1:11355178‑M1/35‑35 (MQ=255)
ccTGAATCAACACCAGCGCAGGCAGCAAACCGTgg                                     >  1:4534785/1‑35 (MQ=255)
ccTGAATCAACACCAGCGCAGGCAGCAAACCGTgg                                     >  1:16692128/1‑35 (MQ=255)
ccTGAATCAACACCAGCGCAGGCAGCAAACCGTgg                                     >  1:10510006/1‑35 (MQ=255)
 gcctatatcgaagacacggcgtaaatcaccgtcgg                                    <  1:15583704‑M1/2‑1 (MQ=255)
 gcccatatcgaagacacggcgtaaatcaccgtcgg                                    <  1:5177673‑M1/2‑1 (MQ=255)
 gcccatatcgaagacacggcgtaaatcaccgtcgg                                    >  1:1060413‑M1/34‑35 (MQ=255)
 gcccatatcgaagacacggcgtaaatcaccgtcgg                                    <  1:20182064‑M1/2‑1 (MQ=255)
 gcccatatcgaagacacggcgtaaatcaccgtcgg                                    <  1:20141091‑M1/2‑1 (MQ=255)
 gcccatatcgaagacacggcgtaaatcaccgtcgg                                    <  1:7488057‑M1/2‑1 (MQ=255)
 cTGAATCAACACCAGCGCAGGCAGCAAACCGTggg                                    >  1:1611966/1‑35 (MQ=255)
 cTGAATCAACACCAGCGCAGGCAGCAAACCGTggg                                    >  1:8022532/1‑35 (MQ=255)
 cTGAATCAACACCAGCGCAGGCAGCAAACCGTggg                                    >  1:17229911/1‑35 (MQ=255)
  tGAATCAACACCAGTGCAGGCAGCAAACCGTgggg                                   >  1:5719922/1‑35 (MQ=255)
  tGAATCAACACCAGCGCAGGCAGCAAACCGTgggg                                   >  1:16241395/1‑35 (MQ=255)
  tGAATCAACACCAGCGCAGGCAGCAAACCGTgggg                                   <  1:15529517/35‑1 (MQ=255)
  tGAATCAACACCAGCGCAGGCAGCAAACCGTgggg                                   <  1:2191416/35‑1 (MQ=255)
   gAATCAACACCAGCGCAGGCAGCAAACCGTggggg                                  >  1:6654376/1‑35 (MQ=255)
   gAATCAACACCAGCGCAGGCAGCAAACCGTggggg                                  >  1:8698793/1‑35 (MQ=255)
   gAATCAACACCAGAGCAGGCGGCCAACCCTggggg                                  >  1:21120/1‑35 (MQ=19)
   ccatatcgaagacacggcgtaaatcaccgtcgggg                                  <  1:13128978‑M1/4‑1 (MQ=255)
   ccatatcgaagacacggcgtaaatcaccgtcgggg                                  <  1:17056051‑M1/4‑1 (MQ=255)
   ccatatcgaagacacggcgtaaatcaccgtcggga                                  <  1:11481198‑M1/4‑2 (MQ=255)
    catatcgaagacacggcgtaaatcaccgtcgggaa                                 <  1:2621549‑M1/5‑3 (MQ=255)
    catatcgaagacacggcgtaaatcaccgtcGGGga                                <  1:13811692‑M1/5‑1 (MQ=255)
    catatcgaagacacggcgtaaatcaccgtcGGGga                                <  1:8658172‑M1/5‑1 (MQ=255)
    aaTCAACACCAGCGCAGGCAGCAAACCGTGGGGga                                >  1:8185846/1‑35 (MQ=255)
     aTCAACACCAGCGCAGGCAGCAAACCGTGGGGgaa                               <  1:19623343/35‑1 (MQ=255)
     aTCAACACCAGCGCAGGCAGCAAACCGTGGGGgaa                               >  1:14122698/1‑35 (MQ=255)
     aTCAACACCAGCGCAGGCAGCAAACCGTGGGGgaa                               <  1:17893279/35‑1 (MQ=255)
      tatcgaagacacggcgtaaatcaccgtcGGGgaag                              <  1:15063973‑M1/7‑1 (MQ=255)
      tCAACACCAGCGCAGGCAGCAAACCGTGGGGgaag                              >  1:19334868/1‑35 (MQ=255)
      tCAACACCAGCGCAGGCAGCAAACCGTGGGGgaag                              >  1:13971060/1‑35 (MQ=255)
      tCAACACCAGCGCAGGCAGCAAACCGTGGGGgaag                              <  1:4271265/35‑1 (MQ=255)
       cAACACCAGCGCAGGCAGCAAACCGTGGGGgaaga                             <  1:13194929/35‑1 (MQ=255)
       cAACACCAGCGCAGGCAGCAAACCGTGGGGgaaga                             >  1:10144754/1‑35 (MQ=255)
        tcgaagacacggcgtaaatcaccgtcGGGgaagaa                            <  1:944810‑M1/9‑1 (MQ=255)
        aaCACCATCGCAGGCAGCAAACCGTGGGGgaagaa                            >  1:15091587/1‑35 (MQ=255)
        aaCACCAGCGCAGGCAGCAAACCGTGGGGgaagaa                            >  1:6751257/1‑35 (MQ=255)
        aaCACCAGCGCAGGCAGCAAACCGTGGGGgaagaa                            >  1:14097101/1‑35 (MQ=255)
        aaCACCAGCGCAGGCAGCAAACCGTGGGGgaagaa                            >  1:824660/1‑35 (MQ=255)
        aaCACCAGCGCAGGCAGCAAACCGTGGGGgaagaa                            >  1:7854782/1‑35 (MQ=255)
         cgaagacacggcgtaaatcaccgtcGGGTaagaag                           <  1:13371140‑M1/10‑1 (MQ=255)
         cgaagacacggcgtaaatcaccgtcGGGGaagaag                           <  1:8514444‑M1/10‑1 (MQ=255)
         cgaagacacggcgtaaatcaccgtcGGGGaaaaag                           <  1:8462038‑M1/10‑1 (MQ=255)
         cgaagacacggcgtaaatcaccgtcGGGGaaaaag                           <  1:11993750‑M1/10‑1 (MQ=255)
         acacCAGCGCAGGCAGCAAACCGTGGGGGaagaag                           <  1:533537/35‑1 (MQ=255)
         acacCAGCGCAGGCAGCAAACCGTGGGGGaagaag                           >  1:5763805/1‑35 (MQ=255)
          gaagacacggcgtaaatcaccgtcGGGGAAGAAgc                          <  1:2690099‑M1/11‑1 (MQ=255)
          gaagacacggcgtaaatcaccgtcGGGGAAAAAgc                          <  1:11223957‑M1/11‑1 (MQ=255)
          cgccAGCGCAGGCAGCAAACCGTGGGGGAAGAAgc                          <  1:5009161/33‑1 (MQ=255)
          cacCAGCGCATGCAGCAAACCGTGGGGGAAGAAgc                          >  1:7739752/1‑35 (MQ=255)
          cacCAGCGCAGGCAGCAAACCGTGGGGGAAGAAgc                          <  1:3557294/35‑1 (MQ=255)
          cacCAGCGCAGGCAGCAAACCGTGGGGGAAGAAgc                          >  1:3745163/1‑35 (MQ=255)
          cacCAGCGCAGGCAGCAAACCGTGGGGGAAGAAgc                          <  1:16985749/35‑1 (MQ=255)
           cccAGCGCAGGCAGCAAACCGTGGGGGAAGAAgcc                         <  1:10822172/34‑1 (MQ=255)
           acCAGCGCAGGCAGCAAACCGTGGGGGAAGAAgcc                         >  1:5588528/1‑35 (MQ=255)
           acCAGCGCAGGCAGCAAACCGTGGGGGAAGAAgcc                         <  1:389089/35‑1 (MQ=255)
           acCAGCGCAGGCAGCAAACCGTGGGGGAAGAAgcc                         >  1:5236335/1‑35 (MQ=255)
           acCAGCGCAGGCAGCAAACCGTGGGGGAAGAAgcc                         <  1:10235156/35‑1 (MQ=255)
           acCAGCGCAGGCAGCAAACCGTGGGGGAAGAAgcc                         >  1:17365932/1‑35 (MQ=255)
            agacacggcgtaaatcaccgtcGGGGAAGAagcct                        <  1:4288075‑M1/13‑2 (MQ=255)
            agacacggcgtaaatcaccgtcGGGGAAGAAgccg                        <  1:20593172‑M1/13‑1 (MQ=255)
             cAGCGCAGGCAGCAAACCGTGGGGGAAGAAgccgc                       >  1:19821646/1‑35 (MQ=255)
             cAGCGCAGGCAGCAAACCGTGGGGGAAGAAgccgc                       >  1:1040402/1‑35 (MQ=255)
              aGCGCAGGCAGCAAACCGTGGGGGAAGAAgccgcc                      >  1:2669287/1‑35 (MQ=255)
              aGCGCAGGCAGCAAACCGTGGGGGAAGAAgccgcc                      >  1:17662138/1‑35 (MQ=255)
              aGCGCAGGCAGCAAACCGTGGGGGAAGAAgccgcc                      >  1:20499539/1‑35 (MQ=255)
                cgcAGGCAGCAAACCGTGGGGGAAGAAGGCGCCAt                    >  1:18080253/1‑35 (MQ=255)
                 gcaggcagCAAACCGTGGGGGAAGAAGCCGCCAtt                   >  1:17835647/1‑35 (MQ=255)
                 gcaggcagCAAACCGTGGGGGAAGAAGCCGCCAtt                   >  1:16743863/1‑35 (MQ=255)
                  caggcagCAAACCGTGGGGGAAGAAGCCGCCATTa                  >  1:7066484/1‑35 (MQ=255)
                  caggcagCAAACCGTGGGGGAAGAAGCCGCCATTa                  >  1:14474513/1‑35 (MQ=255)
                  caggcagCAAACCGTGGGGGAAGAAGCCGCCATTa                  >  1:12772284/1‑35 (MQ=255)
                   aggcagCAAACCGTGGGGGAAGAAGCCGCCATTAt                 >  1:902118/1‑35 (MQ=255)
                   aggcagCAAACCGTGGGGGAAGAAGCCGCCATTAt                 >  1:9596965/1‑35 (MQ=255)
                   aggcagCAAACCGTGGGGGAAGAAGCCGCCATTAt                 >  1:13035748/1‑35 (MQ=255)
                   aggcagCAAACCGTGGGGGAAGAAGCCGCCATTAt                 >  1:2158898/1‑35 (MQ=255)
                   aggcagCAAACCGTGGGGGAAGAAGCCGCCATTAt                 >  1:19244138/1‑35 (MQ=255)
                    ggcagCAAACCGTGGGGGAAGAAGCCGCCATTATc                >  1:10898751/1‑35 (MQ=255)
                    ggcagCAAACCGTGGGGGAAGAAGCCGCCATTATc                >  1:9031030/1‑35 (MQ=255)
                    ggcagCAAACCGTGGGGGAAGAAGCCGCCATTATc                >  1:4802382/1‑35 (MQ=255)
                    ggcagCAAACCGTGGGGGAAGAAGCCGCCATTATc                >  1:23414/1‑35 (MQ=255)
                    ggcagCAAACCGTGGGGGAAGAAGCCGCCATTATc                >  1:7477652/1‑35 (MQ=255)
                     gcagcaAACCGTGGGGGAAGAAGCCGCCATTATCg               >  1:10042561/1‑35 (MQ=255)
                     gcagcaAACCGTGGGGGAAGAAGCCGCCATTATCg               >  1:19573652/1‑35 (MQ=255)
                     gcagcaAACCGTGGGGGAAGAAGCCGCCATTATCg               >  1:8486514/1‑35 (MQ=255)
                      cagcaAACCGTGGGGGAAGAAGCCGCCATTATCgg              >  1:13716264/1‑35 (MQ=255)
                       agcaAACCGTGGGGGAAGGAGCCGCCATTATCGGt             >  1:5105744/1‑35 (MQ=255)
                       agcaAACCGTGGGGGAAGAAGCCGCCATTATCGGt             >  1:12689991/1‑35 (MQ=255)
                        aaaaaCCGGGGGGGAAAAAACCCGACATTATCGGt             <  1:1363902/33‑1 (MQ=2)
                         caAACCGTGTGGGAAGAAGCCGCCATTATCGGTGa           >  1:16089485/1‑35 (MQ=255)
                           aaCCGTGGGGGAAGAAGCCGCCATTATCGGGGAtt         >  1:18131164/1‑35 (MQ=255)
                             ccGTGGGGGAAGAAGCCGCCATTATCGGTGATTaa       >  1:2604777/1‑35 (MQ=255)
                              cGTGGGGGAAGAAGCCGCCATTATCGGTGAATaaa      >  1:13880821/1‑35 (MQ=255)
                               gTGGGGGAAGAAGCCGCCATTATCGGTGATTAAAt     >  1:4968804/1‑35 (MQ=255)
                                 gggggAAGAAGCCGCCATTATCTGTGATTAAATGa   >  1:14684533/1‑35 (MQ=255)
                                 ggggaAAAAACCCGCCATTATCGGTGATTAAATGa   <  1:5368644/35‑1 (MQ=25)
                                  ggggAAGAAGCCGCCATTATCGGTGAATTAAAGaa  >  1:17647737/1‑35 (MQ=25)
                                  GGGGAAGAAGCCGCCATTATCGGTGATTAAATGaa  <  1:12094359‑M1/35‑1 (MQ=255)
                                  |                                   
CCTGAATCAACACCAGCGCAGGCAGCAAACCGTGGGGGAAGAAGCCGCCATTATCGGTGATTAAATGAA  >  REL606/1495411‑1495479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.