New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 25693370 (0.680)10 (0.130) 4/36 NT 13.6% coding (70/399 nt) yafO predicted toxin of the YafO‑YafN toxin‑antitoxin system
?REL606 3944634 = 75 (0.970)intergenic (+23/‑124) proM/aslB tRNA‑Pro/predicted regulator of arylsulfatase activity

Only 100 of 145 total aligned reads displayed.

ACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGATTTTATTTCCTATAAGCGTGACGGTGTTTTGCC  >  REL606/256899‑256967
                                  |                                  
aCTTACAGCAGAGGAACTTGATGCGTTAACGGCGG                                    <  1:10972522‑M1/35‑1 (MQ=255)
aCTTACAGCAGAGGAACTTGATGCGTTAACGGCGG                                    >  1:3528144‑M1/1‑35 (MQ=255)
 cTTACAGCAGAGGAACTTGATGCGTTAACGGCGGg                                   >  1:11014334‑M1/1‑34 (MQ=255)
 cTTACAGCAGAGGAACTTGATGCGTTAACGGCGGg                                   >  1:1733367‑M1/1‑34 (MQ=255)
  ttACAGCAGAGGAACTTGATGCGTTAACGGCGGgg                                  >  1:17323727‑M1/1‑33 (MQ=255)
   tACAGCAGAGGAACTTGATGCGTTAACGGCGGgtg                                 >  1:14175929‑M1/1‑32 (MQ=255)
   tACAGCAGAGGAACTTGATGCGTTAACGGCGGggt                                 >  1:14243311‑M1/1‑32 (MQ=255)
   tACAGCAGAGGAACTTGATGCGTTAACGGCGGggt                                 >  1:11247274‑M1/1‑32 (MQ=255)
   tACAGCAGAGGAACTTGATGCGTTAACGGCGGggg                                 >  1:16868533‑M1/1‑32 (MQ=255)
   tACAGCAGAGGAACTTGATGCGTTAACGGCGGAtt                                 <  1:17481994/35‑1 (MQ=255)
   tACAGCAGAGGAACTTGATGCGTTAACGGCGGAtt                                 <  1:12303293/35‑1 (MQ=255)
   tACAGCAGAGGAACTTGATGCGTTAACGGCGGAtt                                 <  1:7103546/35‑1 (MQ=255)
    aCAGCAGAGGAACTTGATGCGTTAACGGCGGgttt                                >  1:2432520‑M1/1‑31 (MQ=255)
    aCAGCAGAGGAACTTGATGCGTTAACGGCGGggtt                                >  1:3253677‑M1/1‑31 (MQ=255)
    aCAGCAGAGGAACTTGATGCGTTAACGGCGGggtt                                >  1:18485466‑M1/1‑31 (MQ=255)
    aCAGCAGAGGAACTTGATGCGTTAACGGCGGggtt                                >  1:6670627‑M1/1‑31 (MQ=255)
    aCAGCAGAGGAACTTGATGCGTTAACGGCGGgggt                                >  1:18990954‑M1/1‑31 (MQ=255)
     cagcagAGGAACTTGATGCGTTAACGGCGGggttt                               >  1:15257634‑M1/1‑30 (MQ=255)
     cagcagAGGAACTTGATGCGTTAACGGCGGAtttt                               <  1:3000264/35‑1 (MQ=255)
     cagcagAGGAACTTGATGCGTTAACGGCGGAtttt                               <  1:16600386/35‑1 (MQ=255)
     cagcagAGGAAATTGATGCGTTAACGGCGGAtttt                               <  1:17421802/35‑1 (MQ=255)
      agcagAGGAACTTGATGCGTTAACGGCGGggtttt                              >  1:11951493‑M1/1‑29 (MQ=255)
      agcagAGGAACTTGATGCGTTAACGGCGGggttta                              >  1:3573601‑M1/1‑29 (MQ=255)
      agcagAGGAACTTGATGCGTTAACGGCGGgggtta                              >  1:2241996‑M1/1‑29 (MQ=255)
      agcagAGGAACTTGATGCGTTAACGGCGGATTTTa                              <  1:18142355/35‑1 (MQ=255)
      agcagAGGAACTTGATGCGTTAACGGCGGATTTTa                              <  1:8331639/35‑1 (MQ=255)
       gcagAGGAACTTGATGCGTTAACGGCGGATTTTAt                             <  1:14186210/35‑1 (MQ=255)
       gcagAGGAACTTGATGCGTTAACGGCGGATTTTAt                             <  1:8824893/35‑1 (MQ=255)
        catagGAACTTGATGCGTTAACGGCAGGTTTTAtt                            >  1:11547398/4‑35 (MQ=25)
        cagAGGAACTTGATGCGTTAACGGCGGggtttttt                            >  1:8028186‑M1/1‑27 (MQ=255)
        cagAGGAACTTGATGCGTTAACGGCGGATTTTAtt                            <  1:18757694/35‑1 (MQ=255)
        cagAGGAACTTGATGCGTTAACGGCGGATTTTAtt                            <  1:13847253/35‑1 (MQ=255)
         agagGAACTTGATGCGTTAACGGCGGggttttttt                           >  1:3887386‑M1/1‑26 (MQ=255)
          gagGAACTTGATGCGTTAACGGCGGggtttttttt                          >  1:14740925‑M1/1‑25 (MQ=255)
          gagGAACTTGATGCGTTAACGGCGGggtttttttt                          >  1:12517515‑M1/1‑25 (MQ=255)
          gagGAACTTGATGCGTTAACGGCGGATTTTATTTc                          <  1:8843028/35‑1 (MQ=255)
          gagGAACTTGATGCGTTAACGGCGGATTTTATTTc                          <  1:5360070/35‑1 (MQ=255)
           agGAACTTGATGCGTTAACGGCGGggttttttttc                         >  1:19437575‑M1/1‑24 (MQ=255)
           agGAACTTGATGCGTTAACGGCGGATTTTATTTcc                         <  1:17653312/35‑1 (MQ=255)
            ggAACTTGATGCGTTAACGGCGGggtttttttttt                        >  1:12126449‑M1/1‑23 (MQ=255)
            ggAACTTGATGCGTTAACGGCGGGGTTTTTTTTCt                        >  1:20518957/1‑35 (MQ=16)
            ggAACTTGATGCGTTAACGGCGGATTTTATTTCCt                        <  1:2022416/35‑1 (MQ=255)
            ggAACTTGATGCGTTAACGGCGGATTTTATTTCCt                        <  1:11242834/35‑1 (MQ=255)
            ggAACTTGATGCGTTAACGGCGGATTTTATTTCCt                        <  1:13076786/35‑1 (MQ=255)
             gAACTTGATGCGTTAACGGCGGGGTTTTTTTTCtt                       >  1:8403964/1‑34 (MQ=16)
             gAACTTGATGCGTTAACGGCGGATTTTATTTCCta                       <  1:4640855/35‑1 (MQ=255)
             gAACTTGATGCGTTAACGGCGGATTTTATTTCCta                       <  1:8533124/35‑1 (MQ=255)
             gAACTTGATGCGTTAACGGCGGATTTTATTTCCta                       <  1:9701008/35‑1 (MQ=255)
             gAACTTGATGCGTTAACGGCGGATTTTATTTCCta                       <  1:18032066/35‑1 (MQ=255)
             gAACTTGATGCGTTAACGGCGGATTTTATTTCCta                       <  1:16102650/35‑1 (MQ=255)
              aaCTTGATGCGTTAACGGCGGGGTTTTTTTTCttt                      >  1:13782772/1‑33 (MQ=12)
              aaCTTGATGCGTTAACGGCGGATTTTATTTCCtat                      <  1:9489044/35‑1 (MQ=255)
              aaCTTGATGCGTTAACGGCGGATTTTATTTCCtat                      <  1:8340834/35‑1 (MQ=255)
               aCTTGATGCGTTAACGGCGGGGTTTTTTTTTtata                     >  1:19914640/1‑35 (MQ=12)
               aCTTGATGCGTTAACGGCGGATTTTATTTCCtata                     <  1:10110059/35‑1 (MQ=255)
               aCTTGATGCGTTAACGGCGGATTTTATTTCCtata                     <  1:16691036/35‑1 (MQ=255)
                cTTGATGCGTTAACGGCGGATTTTATTTCCTATaa                    <  1:18358076/35‑1 (MQ=255)
                cTTGATGCGTTAACGGCGGATTTTATTTCCTATaa                    <  1:20464441/35‑1 (MQ=255)
                 ttGATGCGTTAACGGCGGGGTTTTTTTTTTATAAg                   >  1:1889686/1‑35 (MQ=12)
                 ttGATGCGTTAACGGCGGATTTTATTTCCTATAAg                   <  1:6201712/35‑1 (MQ=255)
                 ttGATGCGTTAACGGCGGATTTTATTTCCTATAAg                   <  1:7647724/35‑1 (MQ=255)
                  tGATGCGTTAACGGCGGATTTTATTTCCTATAAGc                  <  1:9299364/35‑1 (MQ=255)
                  tGATGCGTTAACGGCGGATTTTATTTCCTATAAGc                  <  1:5915953/35‑1 (MQ=255)
                   gATGCGTTAACGGCGGATTTTATTTCCTATAAGCg                 <  1:9076226/35‑1 (MQ=255)
                   gATGCGTTAACGGCGGATTTTATTTCCTATAAGCg                 <  1:13202320/35‑1 (MQ=255)
                    aTGCGTTAACGGCGGGGTTTTTTTTCTTTAAACgg                >  1:71506/1‑34 (MQ=2)
                    aTGCGTTAACGGCGGATTTTATTTCCTATAAGCGt                <  1:4152795/35‑1 (MQ=255)
                     tGCGTTAACGGCGGATTTTATTTCCTATAAGCGTg               <  1:15813178/35‑1 (MQ=255)
                     tGCGTTAACGGCGGATTTTATTTCCTATAAGCGTg               <  1:15498371/35‑1 (MQ=255)
                      gCGTTAACGGCGGATTTTATTTCCTATAAGCGTGa              <  1:4185977/35‑1 (MQ=255)
                       cGTTAACTGCGGATTTTATTTCCTATAAGCGTGAc             >  1:8054945/1‑35 (MQ=255)
                        gTTAACGGCGGATTTTATTTCCTATAAGCGTGACg            <  1:19083602/35‑1 (MQ=255)
                        gTTAACGGCGGATTTTATTTCCTATAAGCGTGACg            <  1:18423508/35‑1 (MQ=255)
                        gTTAACGGCGGATTTTATTTCCTATAAGCGTGACg            <  1:6823957/35‑1 (MQ=255)
                         ttAACGGCGGATTTTATTTCCTATAAGCGTGACgg           <  1:14894631/35‑1 (MQ=255)
                         ttAACGGAGGATTTTATTTCCTATAAGCGTGACgg           <  1:8578561/35‑1 (MQ=255)
                          tAACGGAGGATTTTATTTCCTATAAGCGTGACGgt          <  1:3041882/35‑1 (MQ=255)
                            aCGGCGGATTTTATTTCCTATAAGCGTGACGgtgt        <  1:19488700/35‑1 (MQ=255)
                             cggcggATTTTATTTCCTATAAGCGTGACGGTGtt       <  1:20516326/35‑1 (MQ=255)
                             cggcggATTTTATTTCCTATAAGCGTGACGGTGtt       <  1:17150973/35‑1 (MQ=255)
                              ggcggATTTTATTTCCTATAAGCGTGACGGTGttt      <  1:9733137/35‑1 (MQ=255)
                              ggcggATTTTATTTCCTATAAGCGTGACGGTGttt      >  1:19098507/1‑35 (MQ=255)
                              ggcggATTTTATTTCCTATAAGCGTGACGGTGttt      >  1:19232484/1‑35 (MQ=255)
                              ggcggATTTTATTTCCTATAAGCGTGACGGGGttt      >  1:3412165/1‑35 (MQ=255)
                               gcggATTTTATTTCCTATAAGCGTGACGGTGtttt     <  1:14428643/35‑1 (MQ=255)
                               gcggATTTTATTTCCTATAAGCGTGACGGTGtttt     >  1:5280544/1‑35 (MQ=255)
                               gcggATTTTATTTCCTATAAGCGTGACGGTGtttt     <  1:20033635/35‑1 (MQ=255)
                               gcggATTTTATTTCCTATAAGCGTGACGGTGtttt     <  1:2954553/35‑1 (MQ=255)
                               gcggATTTTATTTCCTATAAGCGTGACGGGGtttt     >  1:8908234/1‑35 (MQ=255)
                               gcggATTTTATTTCCTATAAGCGTGACGGGGgttt     >  1:6872749/1‑35 (MQ=38)
                                cggATTTTATTTCCTATAAGCGTGACGGTGTTTTg    >  1:12561716/1‑35 (MQ=255)
                                cggATTTTATTTCCTATAAGCGTGACGGTGTTTTg    <  1:11442814/35‑1 (MQ=255)
                                cggATTTTATTTCATATAAGCGTGACGGTGTTTTg    <  1:10030166/35‑1 (MQ=255)
                                 ggATTTTATTTCCTATAAGCGTGACGGTGTTTTGc   <  1:7711316/35‑1 (MQ=255)
                                 ggATTTTATTTCCTATAAGCGTGACGGTGTTTTGc   >  1:17063281/1‑35 (MQ=255)
                                 ggATTTTATTTCCTATAAGCGTGACGGTGTTTTGc   >  1:14243728/1‑35 (MQ=255)
                                 ggATTTTATTTCCTATAAGCGTGACGGTGTTTTGc   >  1:10276087/1‑35 (MQ=255)
                                  gATTTTATTTCCTATAAGCGTGACGGTGTTTTGcc  <  1:3853938/35‑1 (MQ=255)
                                  gATTTTATTTCCTATAAGCGTGACGGTGTTTTGcc  <  1:5152983/35‑1 (MQ=255)
                                  gATTTTATTTCCTATAAGCGTGACGGGGTTTTGcc  >  1:5575149/1‑35 (MQ=255)
                                  |                                  
ACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGATTTTATTTCCTATAAGCGTGACGGTGTTTTGCC  >  REL606/256899‑256967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.