New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 866988 = | 115 (1.120) | 7 (0.090) | 4/38 | NT | 9.9% | coding (1206/2097 nt) | yliE | conserved inner membrane protein |
? | REL606 | = 4527146 | 37 (0.450) | coding (1137/2637 nt) | fimD | outer membrane usher protein, type 1 fimbrial synthesis |
Only 100 of 201 total aligned reads displayed.
TGCGCATCCATAAGTCTGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGAGTTACGCAGAAAAAC > REL606/866954‑867022 | tGCGCATCCATAAGTCTGCCATTTGTGAACCTTTg < 1:10557530/35‑1 (MQ=255) tGCGCATCCATAAGTCTGCCATTTGTGAACCTTTg < 1:15342531/35‑1 (MQ=255) tGCGCATCCATAAGTCTGCCATTTGTGAACCTTTg > 1:12689398/1‑35 (MQ=255) tGCCCATCCATAAGTCTGCCATTTGTGAACCTTTg < 1:1812302/35‑1 (MQ=255) gcaacgtgaagggcatactcgttattccattacgg > 1:4685235‑M1/35‑35 (MQ=255) gcaacgtgaagggcatactcgttattccattacgg > 1:8252483‑M1/35‑35 (MQ=255) gcgcATCCATAAGTCTGCCATTTGTGAACCTTTGc > 1:19310797/1‑35 (MQ=255) gcccATCCATAAGTCTGCCATTTGTGAACCTTTGc < 1:4512063/32‑1 (MQ=255) gcccATCCATAAGTCTGCCATTTGTGAACCTTTGc < 1:1328128/32‑1 (MQ=255) caacgtgaagggcatactcgttattccattacgGc > 1:15411847‑M1/34‑35 (MQ=255) caacgtgaagggcatactcgttattccattacgGc > 1:7207761‑M1/34‑35 (MQ=255) caacgtgaagggcatactcgttattccattacgGc < 1:8392629‑M1/2‑1 (MQ=255) aacgtgaagggcatactcgttattccattacgGCa > 1:8009087‑M1/33‑35 (MQ=255) aacgtgaagggcatactcgttattccattacgGCa < 1:2517770‑M1/3‑1 (MQ=255) gcATCCATAAGTCTGCCATTTGTGAACCTTTGCAg > 1:16592119/1‑35 (MQ=255) gcATCCATAAGTCTGCCATTTGTGAACCTTTGCAg > 1:14162254/1‑35 (MQ=255) acgtgaatggcatactcgttattccattacgGCAg < 1:14427023‑M1/4‑1 (MQ=255) acgtgaagggcatactcgttattccattacgGCAg < 1:16446058‑M1/4‑1 (MQ=255) acgtgaagggcatactcgttattccattacgGCAg > 1:1448704‑M1/32‑35 (MQ=255) acgtgaagggcatactcgttattccattacgGCAg > 1:5149747‑M1/32‑35 (MQ=255) cgtgaagggcatactcgttattccattacgGCAgg < 1:10344590‑M1/5‑1 (MQ=255) cgtgaagggcatactcgttattccattacgGCAgg > 1:15976117‑M1/31‑35 (MQ=255) cATCCATAAGTCTGCCATTTGTGAACCTTTGCAgg > 1:12563551/1‑35 (MQ=255) cATCCATAAGTCTGCCATTTGTGAACCTTTGCAgg < 1:2828978/35‑1 (MQ=255) gtgaagggcatactcgttattccattacgGCAggg < 1:20223483‑M1/6‑1 (MQ=255) aTCCATAAGTCTGCCATTTGTGAACCTTTGCAggg > 1:3792588/1‑35 (MQ=255) aTCCATAAGTCTGCCATTTGTGAACCTTTGCAggg < 1:15143627/35‑1 (MQ=255) tgaagggcatactcgttattccattacgGCAgggg < 1:9465678‑M1/7‑1 (MQ=255) gaagggcatactcgttattccattacgGCAggggg < 1:245634‑M1/8‑1 (MQ=255) ccATAAGTCTGCCATTTGTGAACCTTTGCAggggg > 1:4363516/1‑35 (MQ=255) ccATAAGTCTGCCATTTGTGAACCTTTGCAggggg > 1:12919080/1‑35 (MQ=255) cATAAGTCTGCCATTTGTGAACCTTTGCAGGGGGa > 1:8649425/1‑35 (MQ=255) aagggcatactcgttattccattacgGCAGGGGGa < 1:2506501‑M1/9‑1 (MQ=255) aagggcatactcgttattccattacgGCAGGGGGa < 1:5518317‑M1/9‑1 (MQ=255) aTAAGTCTGCCATTTGTGAACCTTTGCAGGGGGaa < 1:18598727/35‑1 (MQ=255) tAAGTCTGCCATTTGTGAACCTTTGCAGGGGGaaa < 1:8450934/35‑1 (MQ=255) tAAGTCTGCCATTTGTGAACCTTTGCAGGGGGaaa > 1:5836922/1‑35 (MQ=255) gggcatactcgttattccattacgGCAGGGggata < 1:576541‑M1/11‑3 (MQ=255) aaGTCTGCCATTTGTGAACCTTTGCAGGGGGaaaa > 1:11726297/1‑35 (MQ=255) aaGTCTGCCATTTGTGAACCTTTGCAGGGGGaaaa > 1:7462250/1‑35 (MQ=255) aggcTGCCATTTGTGAACCTTTGCAGGGGGAAAAc < 1:1643073/32‑1 (MQ=255) aGTCTGCCATTTGTGAACCTTTGCAGGGGGAAAAc < 1:18181793/35‑1 (MQ=255) aGTCTGCCATTTGTGAACCTTTGCAGGGGGAAAAc < 1:15673169/35‑1 (MQ=255) aGTCTGCCATTTGTGAACCTTTGCAGGGGGAAAAc < 1:15027668/35‑1 (MQ=255) aGTCTGCCATTTGTGAACCTTTGCAGGGGGAAAAc > 1:18683750/1‑35 (MQ=255) gTCTGCCATTTGTGAACCTTTGCAGGGGGAAAACg < 1:4928387/35‑1 (MQ=255) catactcgttattccattacgGCAGGgggaaaccg < 1:10834086‑M1/14‑4 (MQ=255) catactcgttattccattacgGCAGGGGGAAAACg < 1:1618834‑M1/14‑1 (MQ=255) cTGCCATTTGTGAACCTTTGCAGGGGGAAAACGcc < 1:10998850/35‑1 (MQ=255) tGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCt > 1:16305664/1‑35 (MQ=255) tGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCt < 1:412486/35‑1 (MQ=255) tGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCt > 1:5255423/1‑35 (MQ=255) tGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCt < 1:694023/35‑1 (MQ=255) tGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCt > 1:2045125/1‑35 (MQ=255) gCCATTTGTGAACCTTTGCAGGGGGAAAACGCCTg > 1:10036862/1‑35 (MQ=255) gCCATTTGTGAACCTTTGCAGGGGGAAAACGCCTg > 1:18542053/1‑35 (MQ=255) ccATTTGTGAACCTTTGCAGGGGGAAAACGCCTgg < 1:16148569/35‑1 (MQ=255) ccATTTGTGAACCTTTGCAGGGGGAAAACGCCTgg < 1:2747089/35‑1 (MQ=255) cATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGa < 1:9162388/35‑1 (MQ=255) cATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGa > 1:14078194/1‑35 (MQ=255) cATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGa < 1:10707509/35‑1 (MQ=255) cATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGa < 1:3407418/35‑1 (MQ=255) cATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGa < 1:4602913/35‑1 (MQ=255) aTTTGTGAACCTTTGCAGGGGGAAAACGCCTGGAg > 1:19106592/1‑35 (MQ=255) aTTTGTGAACCTTTGCAGGGGGAAAACGCCTGGAg > 1:6227486/1‑35 (MQ=255) tttGTGAACCTTTGCAGGGGGAAAACGCCTGGAGt > 1:18103667/1‑35 (MQ=255) ttGTGAACCTTTGCAGGGGGAAAACGCCTGTAGtt > 1:5335516/1‑35 (MQ=255) ttGTGAACCTTTGCAGGGGGAAAACGCCTGGAGtt < 1:14022638/35‑1 (MQ=255) ttGTGAACCTTTGCAGGGGGAAAACGCCTGGAGtt < 1:11041628/35‑1 (MQ=255) ttGTGAACCTTTGCAGGGGGAAAACGCCTGGAGtt > 1:3089158/1‑35 (MQ=255) ttGTGAACCTTTGCAGGGGGAAAACGCCTGGAGtt > 1:19488285/1‑35 (MQ=255) ttGTGAACCTTTGCAGGCGGAAAACGCCTGGAGtt > 1:19789903/1‑35 (MQ=255) tgtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTa > 1:15806081/1‑35 (MQ=255) tgtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTa < 1:13780858/35‑1 (MQ=255) tgtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTa > 1:3963615/1‑35 (MQ=255) tgtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTa > 1:11440395/1‑35 (MQ=255) tgtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTa > 1:8744858/1‑35 (MQ=255) gtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTAc > 1:15958020/1‑35 (MQ=255) gtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTAc < 1:9024939/35‑1 (MQ=255) gAACCTTTGCAGGGGGAAAACGCCTGGAGTTACGc > 1:17659937/1‑35 (MQ=255) gAACCTTTGCAGGGGGAAAACGCCTGGAGTTACGc > 1:5734017/1‑35 (MQ=255) gAACCATTGCAGGGGGAAAACGCCTGGAGTTACGc < 1:674126/35‑1 (MQ=255) aaCCTTTGCAGGGGGAAAACGCCTGGAGTTACGCa < 1:7412750/35‑1 (MQ=255) aaCCTTTGCAGGGGGAAAACGCCTGGAGTTACGCa < 1:11698692/35‑1 (MQ=255) aaCCTTTGCAGGGGGAAAACGCCTGGAGTTACGCa < 1:19236681/35‑1 (MQ=255) aCCTTTGCAGGGGGAAAACGCCTGGAGTTACGCAg < 1:16811591/35‑1 (MQ=255) aCCTTTGCAGGGGGAAAACGCCTGGAGTTACGCAg < 1:12015428/35‑1 (MQ=255) ccTTTGCAGGGGGAAAACGCCTGGAGTTACGCAGa < 1:11256555/35‑1 (MQ=255) ccTTTGCAGGGGGAAAACGCCTGGAGTTACGCAGa < 1:2688791/35‑1 (MQ=255) cTTTGCAGGGGGAAAACGCCTGGAGTTACGCAGaa > 1:16738174/1‑35 (MQ=255) cTTTGCAGGGGGAAAACGCCTGGAGTTACGCAGaa > 1:18395612/1‑35 (MQ=255) tttGCAGGGGGAAAACGCCTGGAGTTACGCAGaaa < 1:1352430/35‑1 (MQ=255) tttGCAGGGGGAAAACGCCTGGAGTTACGCAGaaa < 1:18465517/35‑1 (MQ=255) ttGCAGGGGGAAAACGCCTGGAGTTACGCAGaaaa < 1:35944/35‑1 (MQ=255) ttGCAGGGGGAAAACGCCTGGAGTTACGCAGaaaa > 1:18852719/1‑35 (MQ=255) tGCAGGGGTAAAACGCCTGGAGTTACGCAGaaaaa > 1:14790076/1‑35 (MQ=255) tGCAGGGGGAAAACGCCTTGAGTTACGCAGaaaaa > 1:17609353/1‑35 (MQ=255) tGCAGGGGGAAAACGCCTTGAGTTACGCAGaaaaa > 1:19545167/1‑35 (MQ=255) tGCAGGGGGAAAACGCCTGGAGTTACGCAGaaaaa > 1:2159045/1‑35 (MQ=255) tGCAGGGGGAAAACGCCTGGAGTTACGCAGaaaaa > 1:19228999/1‑35 (MQ=255) | TGCGCATCCATAAGTCTGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGAGTTACGCAGAAAAAC > REL606/866954‑867022 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |