New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 133592652 (0.510)11 (0.170) 5/30 NT 18.7% coding (1724/2676 nt) acnA aconitate hydratase
?REL606 = 2863313 63 (0.980)coding (285/531 nt) ygdP dinucleoside polyphosphate hydrolase

Only 100 of 154 total aligned reads displayed.

ATGAATATCAACCTGGCTTCTGAGCCTATCGGCCATGATCGCAAAGGCGATCCGGTTTATCTGAAAGAT  >  REL606/1335892‑1335960
                                  |                                  
atGAATATCAACCTGGCTTCTGAGTCTATCGGCCA                                    >  1:16902748‑M1/1‑35 (MQ=255)
 tGAATATCAACCTGGCTTCTGAGCCTATCGGCCAa                                   >  1:8389083‑M1/1‑34 (MQ=255)
 tGAATATCAACCTGGCTTCTGAGCATATCGGCCAa                                   >  1:17537086‑M1/1‑34 (MQ=255)
  gAATATCAACCTGGCTTCTGAGCCTCTCGGCCAaa                                  >  1:1198564‑M1/1‑33 (MQ=255)
  gAATATCAACCTGGCTTCTGAGCCTATCGGCCAaa                                  >  1:18948172‑M1/1‑33 (MQ=255)
  gAATATCAACCTGGCTTCTGAGCCTATCGGCCAaa                                  >  1:3896342‑M1/1‑33 (MQ=255)
  gAATATCAACCTGGCTTCTGAGCCTATCGGCCATg                                  <  1:16261852/35‑1 (MQ=255)
  gAATATCAACCTGGCTTCTGAGCCTATCGGCCATg                                  <  1:17371640/35‑1 (MQ=255)
   aaTATCAACCTGGCTTCTGAGCCTATCGGCCAaaa                                 >  1:6906230‑M1/1‑32 (MQ=255)
   aaTATCAACCTGGCTTCTGAGCCTATCGGCCAaaa                                 >  1:8209961‑M1/1‑32 (MQ=255)
   aaTATCAACCTGGCTTCTGAGCCTATCGGCCATGa                                 <  1:6580308/35‑1 (MQ=255)
    atatCAACCTGGCTTCTGAGCCTATCGGCCAaaaa                                >  1:18099676‑M1/1‑31 (MQ=255)
     tatCAACCTGGCTTCTGAGCCTATCGGCCAaaaaa                               >  1:14403607‑M1/1‑30 (MQ=255)
     tatCAACCTGGCTTCTGAGCCTATCGGCCATGATc                               <  1:8684960/35‑1 (MQ=255)
      atCAACCTGGCTTCTGAGCCTATCGGCCAaaaaag                              >  1:1832644‑M1/1‑29 (MQ=255)
      atCAACCTGGCTTCTGAGCCTATCGGCCAaaaaaa                              >  1:8978668‑M1/1‑29 (MQ=255)
       tCAACCTGGCTTCTGAGCCTATCGGCCAaaaaaaa                             >  1:4909589‑M1/1‑28 (MQ=255)
       tCAACCTGGCTTCTGAGCCTATCGGCCATGATCGc                             <  1:7818866/35‑1 (MQ=255)
        taaCCTGGCTTCTGAGCCTATCGGCCATGATCGCa                            <  1:19190970/34‑1 (MQ=255)
        cAACCTGGCTTCTGAGCCTATCGGCCAaaaaaaaa                            >  1:13455040‑M1/1‑27 (MQ=255)
        cAACCTGGCTTCTGAGCCTATCGGCCAaaaaaaaa                            >  1:2809660‑M1/1‑27 (MQ=255)
        cAACCTGGCTTCTGAGCCTATCGGCCATGATCGCa                            <  1:4150081/35‑1 (MQ=255)
        cAACCTGGCTTCTGAGCCTATCGGCCATGATCGCa                            <  1:6287393/35‑1 (MQ=255)
         aaCCTGGCTTCTGAGCCTATCGGCCAaaaaaaaaa                           >  1:13953727‑M1/1‑26 (MQ=255)
         aaCATGCCTTCTGAGCCTATCGGCCATGATCGCaa                           <  1:4773907/35‑1 (MQ=255)
          cccTGGTTTCTGAGCCTATCGGCCATGATCGCaaa                          <  1:7734794/34‑1 (MQ=255)
          aCCTGGCTTCTGAGCCTATCGGCCAaaaaaaaaaa                          >  1:20517051‑M1/1‑25 (MQ=255)
          aCCTGGCTTCTGAGCCTATCGGCCAaaaaaaaaaa                          >  1:10599462‑M1/1‑25 (MQ=255)
          aCCTGGCTTCTGAGCCTATCGGCCATGATCGCaaa                          <  1:14463032/35‑1 (MQ=255)
          aCCTGGCTTCTGAGCCTATCGGCCATGATCGCaaa                          <  1:4109361/35‑1 (MQ=255)
           ccTGGCTTCTGAGCCTATCGGCCAaaaaaaaaaaa                         >  1:942661‑M1/1‑24 (MQ=255)
           ccTGGCTTCTGAGCCTATCGGCCATGATCGCAAAg                         <  1:12508771/35‑1 (MQ=255)
            cgggCTTCTGAGCCTATCGGCCATGATCGCAAAgg                        <  1:2171274/33‑1 (MQ=255)
            cTGGCTTCTGAGCCTATCGGCCATGATCGCAAAgg                        <  1:12573002/35‑1 (MQ=255)
             tGGCTTCTGAGCCTATCGGCCATGATCGCAAAGGc                       <  1:12950541/35‑1 (MQ=255)
             tGGCTTCTGAGCCTATCGGCCATGATCGCAAAGGc                       <  1:6618413/35‑1 (MQ=255)
              ggCTTCTGAGCCTATCGGCCATGATCGCAAAGGCg                      <  1:15406537/35‑1 (MQ=255)
                cTTCTGAGCCTATCGGCCATGATCGCAAAGGCGAt                    <  1:14930063/35‑1 (MQ=255)
                 ttCTGAGCCTATCGGCCATGATCGCAAAGGCGATc                   <  1:5494258/35‑1 (MQ=255)
                 ttCTGAGCCTATCGGCCATGATCGCAAAGGCGATc                   <  1:14646188/35‑1 (MQ=255)
                  tCTGAGCCTATCGGCCATGATCGCAAAGGCGATcc                  <  1:14501196/35‑1 (MQ=255)
                    tGAGCCTATCGGCATGATCGCAAAGGCGAACCggg               >  1:7541322/1‑34 (MQ=21)
                     gAGCCTATCGGCCATGATCGCAAAGGCGATCCGGt               <  1:14180073/35‑1 (MQ=255)
                      agacTATCGGCCATGATCGCAAAGGCGATCCGGtt              <  1:15881361/32‑1 (MQ=255)
                      aGCCTATCGGCCATGATCGCAAAGGCGATCCGGtt              <  1:1894310/35‑1 (MQ=255)
                      aGCCTATCGGCCATGATCGCAAAGGCGATCCGGtt              <  1:6519283/35‑1 (MQ=255)
                      aGCCTATCGGCCATGATCGCAAAGGCGATCCGGtt              <  1:3330821/35‑1 (MQ=255)
                       gCCTATCGGCCATGATCGCAAAGGCGATCCGGttt             <  1:3357556/35‑1 (MQ=255)
                       gCCTATCGGCCATGATCGCAAAGGCGATCCGGttt             <  1:6093107/35‑1 (MQ=255)
                         cTATCGGCCATGATCGCAAAGGCGATCCGGTTTAt           <  1:20413503/35‑1 (MQ=255)
                         cTATCGGCCATGATCGCAAAGGCGATCCGGTTTAt           <  1:15274969/35‑1 (MQ=255)
                          tATCGGCCAaaaacaaaaatggtttctcttgcagc          <  1:13027946‑M1/35‑27 (MQ=255)
                           aTCGGCCAaaaacaaaaatggtttctcttgcagct         <  1:17094407‑M1/35‑28 (MQ=255)
                           aTCGGCCAaaaacaaaaatggtttctcttgcagct         >  1:307728‑M1/1‑8 (MQ=255)
                           aTCGGCCAaaaacaaaaatggtttctcttgcagct         >  1:2171654‑M1/1‑8 (MQ=255)
                           aTCGGCCAaaaacaaaaatggtttctcttgcagct         <  1:186488‑M1/35‑28 (MQ=255)
                            tCGGCCAaaaacaaaaatggtttctcttgcagctg        <  1:1936127‑M1/35‑29 (MQ=255)
                            tCGGCCATGATCGCAAAGGCGATCCGGTTTATCTg        <  1:2526357/35‑1 (MQ=255)
                            tCGGCCATGATCGCAAAGGCGATCCGGTTTATCTg        <  1:15025545/35‑1 (MQ=255)
                            tCGGCCATGATCGCAAAGGCGATCCGGTTTATCTg        <  1:369614/35‑1 (MQ=255)
                            tCGGCCATGATCGCAAAGGCGATCCGGTTTATCTg        <  1:16684442/35‑1 (MQ=255)
                             cGGCCAaaaacaaaaatggtttctcttgcagctgg       <  1:11869030‑M1/35‑30 (MQ=255)
                             cGGCCAaaaacaaaaatggtttctcttgcagctgg       <  1:15316995‑M1/35‑30 (MQ=255)
                             cGGCCAaaaacaaaaatggtttctcttgcagctgg       >  1:20333113‑M1/1‑6 (MQ=255)
                             cGGCCAaaaacaaaaatggtttctcttgcagctgg       >  1:2518026‑M1/1‑6 (MQ=255)
                             cGGCCAaaaacaaaaatggtttctcttgcagctgg       >  1:5993279‑M1/1‑6 (MQ=255)
                             cGGCCAaaaacaaaaatggtttctcttgcagctgg       <  1:14418622‑M1/35‑30 (MQ=255)
                             cGGCCAaaaacaaaaatggtttctcttgcagctgg       <  1:17788534‑M1/35‑30 (MQ=255)
                             cGGCCAaaaacaaaaatggtttctcttgcagctgg       <  1:428840‑M1/35‑30 (MQ=255)
                              ggCCAaaaacaaaaatggtttctcttgcagctggt      >  1:12080486‑M1/1‑5 (MQ=255)
                              ggCCAaaaacaaaaatggtttctcttgcagctggt      <  1:5813674‑M1/35‑31 (MQ=255)
                              ggCCAaaaacaaaaatggtttctcttgcagctggt      <  1:2001008‑M1/35‑31 (MQ=255)
                              ggCCAaaaacaaaaatggtttctcttgcagctggt      >  1:19834585‑M1/1‑5 (MQ=255)
                              ggCCATGATCGCAAAGGCGATCCGGTTTTTTTGaa      >  1:3785879/1‑35 (MQ=37)
                              ggCCATGATCGCAAAGGCGATCCGGTTTATCTGaa      <  1:1873769/35‑1 (MQ=255)
                              ggCCATGATCGCAAAGGCGATCCGGTTTATCTGaa      >  1:5775653/1‑35 (MQ=255)
                               gCCAaaaacaaaaatggtttctcttgcagctggtg     <  1:2638767‑M1/35‑32 (MQ=255)
                               gCCATGATCGCAAAGGCGATCCGGTTTATCTGaaa     <  1:13126847/35‑1 (MQ=255)
                               gCCATGATCGCAAAGGCGATCCGGTTTATCTGaaa     <  1:20431212/35‑1 (MQ=255)
                               gCCATGATCGCAAAGGCGATCCGGTTTATCTGaaa     <  1:17983387/35‑1 (MQ=255)
                                ccAaaaacaaaaatggtttctcttgcagctggtga    >  1:5405484‑M1/1‑3 (MQ=255)
                                ccAaaaacaaaaatggtttctcttgcagctggtga    <  1:10022406‑M1/35‑33 (MQ=255)
                                ccAaaaacaaaaatggtttctcttgcagctggtga    >  1:18376650‑M1/1‑3 (MQ=255)
                                ccAaaaacaaaaatggtttctcttgcagctggtga    <  1:161321‑M1/35‑33 (MQ=255)
                                ccATGATCGCAAAGGCGATCCGGTTTATCTGAAAg    <  1:5195244/35‑1 (MQ=255)
                                ccATGATCGCAAAGGCGATCCGGTTTATCTGAAAg    <  1:3716604/35‑1 (MQ=255)
                                ccATGATCGCAAAGGCGATCCGGTTTATCTGAAAg    >  1:6790153/1‑35 (MQ=255)
                                ccATGATCGCAAAGGCGATCCGGTTTATCTGAAAg    >  1:12098011/1‑35 (MQ=255)
                                 caaaaacaaaaatggtttctcttgcagctggtgag   <  1:13219610‑M1/35‑34 (MQ=255)
                                 cATGATCGCAAAGGCGATCCGGTTTATCTGAAAGa   >  1:9470744/1‑35 (MQ=255)
                                 cATGATCGCAAAGGCGATCCGGTTTATCTGAAAGa   <  1:7644518/35‑1 (MQ=255)
                                 cATGATCGCAAAGGCGATCCGGTTTATCTGAAAGa   >  1:17553176/1‑35 (MQ=255)
                                 cATGATCGCAAAGGCGATCCGGTTTATCTGAAAGa   >  1:20087801/1‑35 (MQ=255)
                                  aaaaacaaaaatggtttctcttgcagctggtgagc  <  1:15782286‑M1/35‑35 (MQ=255)
                                  aaaaacaaaaatggtttctcttgcagctggtgagc  >  1:11482660‑M1/1‑1 (MQ=255)
                                  aaaaacaaaaatggtttctcttgcagctggtgagc  <  1:10291850‑M1/35‑35 (MQ=255)
                                  aaaaacaaaaatggtttctcttgcagctggtgagc  <  1:4441756‑M1/35‑35 (MQ=255)
                                  aTGATCGCAAAGGCGATCCGGTTTATCTGAAAGat  >  1:16336545/1‑35 (MQ=255)
                                  aTGATCGCAAAGGCGATCCGGTTTATCTGAAAGat  >  1:7230637/1‑35 (MQ=255)
                                  aTGATCGCAAAGGCGATCCGGTTTATCTGAAAGat  >  1:989461/1‑35 (MQ=255)
                                  |                                  
ATGAATATCAACCTGGCTTCTGAGCCTATCGGCCATGATCGCAAAGGCGATCCGGTTTATCTGAAAGAT  >  REL606/1335892‑1335960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.