New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 375752576 (0.740)22 (0.260) 8/40 NT 23.1% coding (295/618 nt) yicG conserved inner membrane protein
?REL606 4085859 = 83 (0.970)intergenic (+57/‑92) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F

Only 100 of 165 total aligned reads displayed.

AGTGTTTCTGGTGCTCGATGCGCTCGGACTGGTGGTCTTTTCTATCATCGGGGCACAGGTTGCACTGGA  >  REL606/3757491‑3757559
                                  |                                  
 gtgtTTCTGGTGCTCGATGCGCTCGGACTggtggt                                   <  1:6435428/35‑1 (MQ=255)
 gtgtTTCTGGTGCTCGATGCGCTCGGACTggtggt                                   <  1:12797740/35‑1 (MQ=255)
 gtgtTTCTGGTGCTCGATGCGCTCGGACTGGTGGg                                   >  1:2173867‑M1/1‑34 (MQ=255)
 gtgtTTCTGGTGCTCGATGCGCTCGGACTGGTGGg                                   >  1:12684223‑M1/1‑34 (MQ=255)
  tgtTTCTGGTGCTCGATGCGCTCGGACTGGTGGgc                                  >  1:6619601‑M1/1‑33 (MQ=255)
   gtTTCTGGTGCTCGATGCGCTCGGACTGGTGGggg                                 >  1:19780776‑M1/1‑32 (MQ=255)
   gtTTCTGGTGCTCGATGCGCTCGGACTGGTGGggg                                 >  1:19229599‑M1/1‑32 (MQ=255)
   gtTTCTGGTGCTCGATGCGCTCGGACTGGTGGggg                                 >  1:15223736‑M1/1‑32 (MQ=255)
   gtTTCTGGTGCTCGATGCGCTCGGACTGGTGGggc                                 >  1:8646016‑M1/1‑32 (MQ=255)
   gtTTCTGGTGCTCGATGCGCTCGGACTGGTGGTCt                                 <  1:5413040/35‑1 (MQ=255)
    tttCTGGTGCTCGATGCGCTCGGACTGGTGGTCtt                                <  1:6553384/35‑1 (MQ=255)
     ttCTGGTGCTCGATGCGCTCGGACTGGTGGggttt                               >  1:3431137‑M1/1‑30 (MQ=255)
     ttCTGGTGCTCGATGCGCTCGGACTGGTGGggttt                               >  1:13334604‑M1/1‑30 (MQ=255)
     ttCTGGTGCTCGATGCGCTCGGACTGGTGGTCttt                               <  1:3951018/35‑1 (MQ=255)
     ttCTGGTGCTCGATGCGCTCGGACTGGTGGTCttt                               <  1:18544515/35‑1 (MQ=255)
     ttCTGGTGCTCGATGCGCTCGGACTGGTGGTCttt                               <  1:17792630/35‑1 (MQ=255)
      tCTGGTGCTCGATGCGCTCGGACTGGTGGggtttt                              >  1:3090906‑M1/1‑29 (MQ=255)
      tCTGGTGCTCGATGCGCTCGGACTGGTGGTCtttt                              <  1:7349409/35‑1 (MQ=255)
      tCTGGTGCTCGATGCGCTCGGACTGGTGGTCtttt                              <  1:8915949/35‑1 (MQ=255)
       cTGGTGCTCGATGCGCTCGGACTGGTGGggttttt                             >  1:8445497‑M1/1‑28 (MQ=255)
       cTGGTGCTCGATGCGCTCGGACTGGTGGggttttt                             >  1:6922889‑M1/1‑28 (MQ=255)
       cTGGTGCTCGATGCGCTCGGACTGGTGGTCTTTTc                             <  1:4387750/35‑1 (MQ=255)
        tGGTGCTCGATGCGCTCGGACTGGTGGTCTTTTCt                            <  1:1445144/35‑1 (MQ=255)
        tGGTGCTCGATGCGCTCGGACTGGTGGTCTTTTCt                            <  1:3278787/35‑1 (MQ=255)
        tGGTGCTCGATGCGCTCGGACTGGTGGTCTTTTCt                            <  1:8188876/35‑1 (MQ=255)
        tGGTGCTCGATGCGCTCGGACTGGTGGTCTTTTCt                            <  1:13517007/35‑1 (MQ=255)
         ggTGCTCGATGCGCTCGGACTGGTGGggttttttt                           >  1:6823485‑M1/1‑26 (MQ=255)
         ggTGCTCGATGCGCTCGGACTGGTGGgggtttttt                           >  1:6387867‑M1/1‑26 (MQ=255)
         ggTGCTCGATGCGCTCGGACTGGTGGTCTTTTCTa                           <  1:2946590/35‑1 (MQ=255)
         ggTGCTCGATGCGCTCGGACTGGTGGTCTTTTCTa                           <  1:14134066/35‑1 (MQ=255)
         ggTGCTCGATGCGCTCGGACTGGTGGTCTTTTCTa                           <  1:18737971/35‑1 (MQ=255)
         ggTGCTCGATGCGCTCGGACTGGTGGGCttttttt                           >  1:12272214/1‑32 (MQ=37)
          gTGCTCGATGCGCTCGGACTGGTGGggtttttttt                          >  1:18116701‑M1/1‑25 (MQ=255)
          gTGCTCGATGCGCTCGGACTGGTGGggtttttttt                          >  1:1800824‑M1/1‑25 (MQ=255)
          gTGCTCGATGCGCTCGGACTGGTGGgggttttttt                          >  1:17159742‑M1/1‑25 (MQ=255)
          gTGCTCGATGCGCTCGGACTGGTGGGGTTTTCttt                          >  1:14153524/1‑33 (MQ=25)
           tGCTCGATGCGCTCGGACTGGTGGggttttttttt                         >  1:9005826‑M1/1‑24 (MQ=255)
           tGCTCGATGCGCTCGGACTGGTGGgggttcttttc                         >  1:8402984‑M1/1‑24 (MQ=255)
           tGCTCGATGCGCTCGGACTAGTGGTCTTTTCTatc                         >  1:6273353/1‑35 (MQ=255)
            gCTCGATGCGCTCGGACTGGTGGgggtttttttta                        >  1:6133784‑M1/1‑23 (MQ=255)
             cTCGATGCGCTCGGACTGGTGGTCTTTTCTatcat                       <  1:10440426/35‑1 (MQ=255)
             cTCGATGCGCTCGGACTGGTGGTCTTTTCTatcat                       <  1:15558220/35‑1 (MQ=255)
             cTCGATGCGCTCGGACTGGCGGTCTTTTCTatcat                       <  1:7828139/35‑1 (MQ=255)
              tCGATGCGCTCGGACTGGTGGTCTTTTCTatcatc                      <  1:15660443/35‑1 (MQ=255)
              tCGATGCGCTCGGACTGGTGGTCTTTTCTatcatc                      <  1:19074333/35‑1 (MQ=255)
              tCGATGCGCTCGGACTGGTGGTCTTTCCTatcatc                      <  1:15448232/35‑1 (MQ=255)
               cGATGCGCTCGGACTGGTGGTCTTTTCTATCATCg                     <  1:17919761/35‑1 (MQ=255)
               cGATGCGCTCGGACTGGTGGTCTTTTCTATCATCg                     <  1:1431635/35‑1 (MQ=255)
               cGATGCGCTCGGACTGGTGGTCTTTTCTATCATCg                     <  1:18484845/35‑1 (MQ=255)
               cGATGCGCTCGGACTGGTGGGGTTTTTTTTCTTCg                     >  1:11190394/1‑35 (MQ=12)
               cGATGCGCTAGGACTGGTGGTCTTTTCTATCATCg                     <  1:10086311/35‑1 (MQ=255)
                 aTGCGCTCGGACTGGTGGTCTTTTCTATCATCggg                   <  1:19948691/35‑1 (MQ=255)
                 aTGCGCTCGGACTGGTGGTCTTTTCTATCATCggg                   <  1:14849414/35‑1 (MQ=255)
                 aTGCGCTCGGACTGGTGGTCTTTTCTATCATCggg                   <  1:4007203/35‑1 (MQ=255)
                   gcgcTCGGACTGGTTGGCTTTTTTTTCATCcgggg                 >  1:13421782/1‑34 (MQ=9)
                   gcgcTCGGACTGGTGGTCTTTTCTATCATCGGGGc                 <  1:5290019/35‑1 (MQ=255)
                     gcTCGGACTTGTGGTCTTTTCTATCATCTGGGcac               >  1:9216370/1‑35 (MQ=37)
                     gcTCGGACTGGTGGTCTTTTCTATCATCGGGGcac               <  1:11498360/35‑1 (MQ=255)
                     gcTCGGACTGGTGGTCTTTTCTATCATCGGGGcac               <  1:15611417/35‑1 (MQ=255)
                     gcTCGGACTGGTGGTCTTTTCTATCATCGGGGcac               <  1:3457700/35‑1 (MQ=255)
                      cTCGGACTGGTGGTCTTTTCTATCATCGGGGcaca              <  1:3240766/35‑1 (MQ=255)
                      cTCGGACTGGTGGTCTTTTCTATCATCGGGGcaca              <  1:16952938/35‑1 (MQ=255)
                       tCGGACTGGTGGTCTTTTCTATCATCGGGGCACAg             <  1:2054893/35‑1 (MQ=255)
                       tCGGACTGGTGGTCTTTTCTATCATCGGGGCACAg             <  1:14899021/35‑1 (MQ=255)
                       tCGGACTGGTGGTCTTTTCTATCATCGGGGCACAg             <  1:2719350/35‑1 (MQ=255)
                       tCGGACTGGTGGTCTTTTCTATCATCGGGGCACAg             <  1:16295484/35‑1 (MQ=255)
                       tCGGACTGGTGGTCTTTTCTATCATCGGGGCACAg             <  1:11742284/35‑1 (MQ=255)
                        cGGACTGGTGGTCTTTTCTATCATCGGGGCACAgg            <  1:18185183/35‑1 (MQ=255)
                        cGGACTGGTGGTCTTTTCTATCATCGGGGCACAgg            <  1:13804209/35‑1 (MQ=255)
                          gACTGGTGGTCTTTTCTATCATCGGGGCACAGGtt          <  1:10065034/35‑1 (MQ=255)
                           aCTGGTGGTCTTTTCTATCATCGGGGCACAGGTTg         <  1:10502176/35‑1 (MQ=255)
                            cTGGTGGTCTTTTCTATCATCGGGGCACAGGTTGc        <  1:13755229/35‑1 (MQ=255)
                            cTGGTGGTCTTTTCTATCATCGGGGCACAGGTTGc        >  1:15431631/1‑35 (MQ=255)
                             tggtggTCTTTTCTATCATCGGGGCACAGGTTGCa       <  1:5651773/35‑1 (MQ=255)
                             tggtggTCTTTTCTATCATCGGGGCACAGGTTGCa       <  1:16744271/35‑1 (MQ=255)
                              ggtggtCTTTTCTATCATCGGGGCACAGGTTGCAc      >  1:1398321/1‑35 (MQ=255)
                              ggtggtCTTTTCTATCATCGGGGCACAGGTTGCAc      <  1:6264299/35‑1 (MQ=255)
                               gtggtCTTTTCTATCATCGGGGCACAGGTTGCACt     >  1:15794770/1‑35 (MQ=255)
                               gtggtCTTTTCTATCATCGGGGCACAGGTTGCACt     <  1:16879343/35‑1 (MQ=255)
                               gtgggggttttttttatcctcaatttgcctgctgc     <  1:9424556‑M1/35‑32 (MQ=255)
                               gtgggggttttttttatcctcaatttgcctgctgc     <  1:19635111‑M1/35‑32 (MQ=255)
                               gtgggggttttttttatcatcaatttgcctgctgc     <  1:16248233‑M1/35‑32 (MQ=255)
                                tggtCTTTTCTATCATCGGGGCACAGGTTGCACTg    >  1:3760356/1‑35 (MQ=255)
                                tggtCTTTTCTATCATCGGGGCACAGGTTGCACTg    >  1:11010401/1‑35 (MQ=255)
                                tggtCTTTTCTATCATCGGGGCACAGGTTGCACTg    >  1:13133234/1‑35 (MQ=255)
                                tggtCTTTTCTATCATCGGGGCACAGGTTACACTg    <  1:1724824/35‑1 (MQ=255)
                                tgggggttttttttatcctcaatttgcctgctgct    <  1:19123130‑M1/35‑33 (MQ=255)
                                 tgggggtttttttatcctcaatttgcctgctgctt   >  1:9257967‑M1/2‑2 (MQ=255)
                                 ggtCTTTTCTATGATCGGGGCACAGGTTGCACTgg   <  1:10867743/35‑1 (MQ=255)
                                 ggtCTTTTCTATCATCGGGGCACAGGTTGCACTgg   >  1:16425451/1‑35 (MQ=255)
                                 ggtCTTTTCTATCATCGGGGCACAGGTTGCACTgg   <  1:9125482/35‑1 (MQ=255)
                                 gggggttttttttatcctcaatttgcctgctgctt   <  1:3024545‑M1/35‑34 (MQ=255)
                                 gggggttttttttatcctcaatttgcctgctgctt   <  1:15286746‑M1/35‑34 (MQ=255)
                                 gggggttttttttatcctcaatttgcctgctgctt   <  1:7220217‑M1/35‑34 (MQ=255)
                                 gggggttttttttatcctcaatttgcctgctgctt   >  1:6978210‑M1/1‑2 (MQ=255)
                                 gggggttttttttatcctcaatttgcctgctgctt   >  1:6361683‑M1/1‑2 (MQ=255)
                                  gtCTTTTCTATCATCGGGGCACAGGTTGCACTGGa  >  1:11670601/1‑35 (MQ=255)
                                  gtCTTTTCTATCATCGGGGCACAGGTTGCACTGGa  >  1:4691289/1‑35 (MQ=255)
                                  ggggttttttttatcctcaatttgcctgctgctta  <  1:3646561‑M1/35‑35 (MQ=255)
                                  ggggttttttttatcctcaatttgcctgctgctta  >  1:17466268‑M1/1‑1 (MQ=255)
                                  |                                  
AGTGTTTCTGGTGCTCGATGCGCTCGGACTGGTGGTCTTTTCTATCATCGGGGCACAGGTTGCACTGGA  >  REL606/3757491‑3757559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.