New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2064681 =76 (0.740)9 (0.120) 3/36 NT 12.3% coding (596/1218 nt) wcaC predicted glycosyl transferase
?REL606 4179328 = 71 (0.920)coding (213/591 nt) yjaG hypothetical protein

CTGGCGCTGGGCTGTCAGTTTATTTCCCCCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2064715‑2064681
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaACTGGAGAAATTTGAAGAAGCGATTCCTTCAGCC  >  REL606/4179328‑4179361
                                                                     
CTGGCGCTGGGCTGTCAGTTTATTTCCCCCAGCCA                                    <  1:8726165/35‑1
CTGGCGCTGGGCTGTCAGTTTATTTCCCCCAGCCA                                    >  1:13531743/1‑35
                  aaaATTTCCCCCAGCCAACTGGAGAAATTTGAAGA                  <  1:4553460/32‑1
                   aaATTTCCCCCAGCCAACTGGAGAAATTTGAAGAA                 <  1:5889363/33‑1
                   aaATTTCCCCCAGCCAACTGGAGAAATTTGAAGAA                 <  1:16480663/33‑1
                    aATTTCCCCCAGCCAACTGGAGAAATTTGAAGAAG                <  1:9998060/34‑1
                     ATTTCCCCCAGCCAACTGGAGAAATTTGAAGAAGC               <  1:4802304/35‑1
                     ATTTCCCCCAGCCAACTGGAGAAATTTGAAGAAGC               <  1:19456797/35‑1
                      ttgCCCCCAGCCAACTGGAGAAATTTGAAGAAGCG              <  1:15765436/32‑1
                      aTTCCGCCAGCCAACTGGAGAAATTTGAAGAAGCG              <  1:20568271/34‑1
                      TTTCCCCCAGCCAACTGGAGAAATTTGAAGAAGCG              <  1:6145948/35‑1
                       TTCCCCCAGCCAACTGGAGAAATTTGAAGAAGCGA             <  1:4988885/35‑1
                        cCCCCCAGCCAACTGGAGAAATTTGAAGAAGCGAT            <  1:5995870/34‑1
                        TCCCCCAGCCAACTGGAGAAATTTGAAGAAGCGAT            <  1:5096676/35‑1
                        TCCCCCAGCCAACTGGAGAAATTTGAAGAAGCGAT            <  1:1012273/35‑1
                        TCCCCCAGCCAACTGGAGAAATTTGAAGAAGCGAT            <  1:11160266/35‑1
                         CCCCCAGCCAACTGGAGAAATTTGAAGAAGCGATT           <  1:8125240/35‑1
                         CCCCCAGCCAACTGGAGAAATTTGAAGAAGCGATT           <  1:4665525/35‑1
                         CCCCCAGCCAACTGGAGAAATTTGAAGAAGCGATT           <  1:19633935/35‑1
                         CCCCCAGCCAACTGGAGAAATTTGAAGAAGCGATT           <  1:17100819/35‑1
                          CCCCAGCCAACTGGAGAAATTTGAAGAAGCGATTC          <  1:11858820/35‑1
                          CCCCAGCCAACTGGAGAAATTTGAAGAAGCGATTC          <  1:20261244/35‑1
                          CCCCAGCCAACTGGAGAAATTTGAAGAAGCGATTC          <  1:15332278/35‑1
                           gCCAGCCAACTGGAGAAATTTGAAGAAGCGATTCC         <  1:15808008/34‑1
                           CCCAGCCAACTGGAGAAATTTGAAGAAGCGATTCC         <  1:348107/35‑1
                           CCCAGCCAACTGGAGAAATTTGAAGAAGCGATTCC         <  1:6417468/35‑1
                            CCAGCCAACTGGAGAAATTTGAAGAAGCGATTCCT        <  1:2790721/35‑1
                             CAGCCAACTGGAGAAATTTGAAGAAGCGATTCCTT       <  1:13954966/35‑1
                             CAGCCAACTGGAGAAATTTGAAGAAGCGATTCCTT       >  1:19705683/1‑35
                             CAGCCAACTGGAGAAATTTGAAGAAGCGATTCCTT       <  1:19662071/35‑1
                             CAGCCAACTGGAGAAATTTGAAGAAGCGATTCCTT       >  1:16208999/1‑35
                             CAGCCAACTGGAGAAATTTGAAGAAGCGATTCCTT       <  1:3621379/35‑1
                             CAGCCAACTGGAGAAATTTGAAGAAGCGATTCCTT       >  1:1146000/1‑35
                             CAGCCAACTGGAGAAATTTGAAGAAGCGATTCCTT       <  1:18610441/35‑1
                             CAGCCAACTGGAGAAATTTGAAGAAGCGATTCCTT       >  1:12866114/1‑35
                             CAGCCAACTGGAGAAATTTGAAGAAGCGATTCCTT       <  1:18549264/35‑1
                              AGCCAACTGGAGAAATTTGAAGAAGCGATTCCTTC      >  1:20496995/1‑35
                              AGCCAACTGGAGAAATTTGAAGAAGCGATTCCTTC      <  1:20263342/35‑1
                              AGCCAACTGGAGAAATTTGAAGAAGCGATTCCTTC      >  1:13825741/1‑35
                              AGCCAACTGGAGAAATTTGAAGAAGCGATTCCTTC      >  1:13373814/1‑35
                              AGCCAACTGGAGAAATTTGAAGAAGCGATTCCTTC      <  1:1314631/35‑1
                              AGCCAACTGGAGAAATTTGAAGAAGCGATTCCTTC      >  1:8729399/1‑35
                              AGCCAACTGGAGAAATTTGAAGAAGCGATTCCTTC      >  1:8866890/1‑35
                               GCCGACTGGAGAAATTTGAAGAAGCGATTCCTTCA     <  1:14114589/35‑1
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     >  1:11788339/1‑35
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     <  1:6972763/35‑1
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     >  1:8525387/1‑35
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     <  1:10290308/35‑1
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     <  1:2694775/35‑1
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     >  1:11946604/1‑35
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     <  1:12912670/35‑1
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     <  1:15160944/35‑1
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     >  1:14270/1‑35
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     <  1:12810008/35‑1
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     <  1:15938525/35‑1
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     >  1:18483334/1‑35
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     <  1:12253835/35‑1
                               GCCAACTGGAGAAATTTGAAGAAGCGATTCCTTCA     <  1:17582593/35‑1
                                CCAACTGGAGAAATTTGAAGAAGCGATTCCTTCAG    <  1:8817181/35‑1
                                CCAACTGGAGAAATTTGAAGAAGCGATTCCTTCAG    >  1:7817306/1‑35
                                CCAACTGGAGAAATTTGAAGAAGCGATTCCTTCAG    >  1:7570409/1‑35
                                CCAACTGGAGAAATTTGAAGAAGCGATTCCTTCAG    <  1:16083963/35‑1
                                CCAACTGGAGAAATTTGAAGAAGCGATTCCTTCAG    <  1:1424855/35‑1
                                CCAACTGGAGAAATTTGAAGAAGCGATTCCTTCAG    >  1:20375443/1‑35
                                CCAACTGGAGAAATTTGAAGAAGCGATTCCTTCAG    >  1:17170987/1‑35
                                CCAACTGGAGAAATTTGAAGAAGCGATTCCTTCAG    <  1:2849556/35‑1
                                 CAACTGGAGAAATTTGAAGAAGCGATTCCTTCAGC   >  1:20046571/1‑35
                                 CAACTGGAGAAATTTGAAGAAGCGATTCCTTCAGC   >  1:20036637/1‑35
                                 CAACTGGAGAAATTTGAAGAAGCGATTCCTTCAGC   <  1:12098640/35‑1
                                 CAACTGGAGAAATTTGAAGAAGCGATTCCTTCAGC   <  1:4274464/35‑1
                                 CAACTGGAGAAATTTGAAGAAGCGATTCCTTCAGC   >  1:18460042/1‑35
                                 CAACTGGAGAAATTTGAAGAAGCGATTCCTTCAGC   >  1:1055468/1‑35
                                 CAACTGGAGAAATTTGAAGAAGCGATTCCTTCAGC   <  1:5301391/35‑1
                                  AACTGGAGAAATTTGAAGAAGCGATTCCTTCAGCC  >  1:18919102/1‑35
                                  AACTGGAGAAATTTGAAGAAGCGATTCCTTCAGCC  <  1:7791486/35‑1
                                  AACTGGAGAAATTTGAAGAAGCGATTCCTTCAGCC  >  1:16079632/1‑35
                                  AACTGGAGAAATTTGAAGAAGCGATTCCTTCAGCC  <  1:1606022/35‑1
                                  AACTGGAGAAATTTGAAGAAGCGATTCCTTCAGCC  <  1:8685738/35‑1
                                  AACTGGAGAAATTTGAAGAAGCGATTCCTTCAGCC  <  1:280647/35‑1
                                  AACTGGAGAAATTTGAAGAAGCGATTCCTTCAGCC  >  1:10955647/1‑35
                                  AACTGGAGAAATTTGAAGAAGCGATTCCTTCAGCC  >  1:11301926/1‑35
                                                                     
CTGGCGCTGGGCTGTCAGTTTATTTCCCCCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2064715‑2064681
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaACTGGAGAAATTTGAAGAAGCGATTCCTTCAGCC  >  REL606/4179328‑4179361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.