Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,460 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3893577–3894996 | 3901456 | 6461–7880 | 51 [46] | [0] 180 | insJ‑5–[yieO] | insJ‑5, insK‑5, rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3652533 | NA (NA) | 95 (0.960) | 38/46 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901457 = | 0 (0.000) | coding (963/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
GTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCT > REL606/3652502‑3652567 | gtTTAACTGTCCAACTTTTTGGGGTCAGTACAAAc > 1:14392514/1‑35 (MQ=35) gtTTAACTGTCCAACTTTTTGGGGTCAGTACAAAc < 1:13169817/35‑1 (MQ=35) gtTTAACTGTCCAACTTTTTGGGGTCAGTACAAAc > 1:4686650/1‑35 (MQ=35) gtTTAACTGTCCAACTTTTTGGGGTAAGTACAAAc < 1:272115/35‑1 (MQ=255) tttAACTGTCCAACTTTTTGGGGTCAGTACAAACt < 1:4716545/35‑1 (MQ=38) tttAACTGTCCAACTTTTTGGGGTCAGTACAAACt > 1:3576082/1‑35 (MQ=38) tttAACTGTCCAACTTTTTGGGGTCAGTACAAACt > 1:9162090/1‑35 (MQ=38) tttAACTGTCCAACTTTTTGGGGTCAGTACAAACt < 1:7142397/35‑1 (MQ=38) ttAACTGTCCAACTTTTTGGGGTCAGTAGAAACtt > 1:16172697/1‑35 (MQ=255) ttAACTGTCCAACTTTTTGGGGTCAGTACAAACtt < 1:18299561/35‑1 (MQ=40) ttAACTGTCCAACTTTTTGGGGTCAGTACAAACtt < 1:1866610/35‑1 (MQ=40) ttAACTGTCCAACTTTTTGGGGTCAGTACAAACtt > 1:17973236/1‑35 (MQ=40) ttAACTGTCCAACTTTTTGGGGTCAGTACAAACtt < 1:3653994/35‑1 (MQ=40) tAACTGTCCAACTTTTTGGGGTCAGTACAAACttt < 1:12668100/35‑1 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTACAAACttt > 1:18248759/1‑35 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTACAAACttt > 1:5566097/1‑35 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACAAACTTTg > 1:14438965/1‑35 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACAAACTTTg < 1:2085632/35‑1 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACAAACTTTg > 1:3860264/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAt > 1:17396575/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAt > 1:10215734/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAt > 1:13977532/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAt > 1:13535338/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAt > 1:12755630/1‑35 (MQ=255) tGTCCAACTTTTTGGGGTCAGTACAAACTTTGAtt > 1:9335185/1‑35 (MQ=255) tGTCCAACTTTTTGGGGTCAGTACAAACCTTGAtt > 1:4523321/1‑35 (MQ=255) gTCCAACTTTTTGGGGTCAGTACAAACTTTGAttt > 1:10439090/1‑35 (MQ=255) gTCCAACTTTTTGGGGTCAGTACAAACTTTGAttt < 1:11457002/35‑1 (MQ=255) gTCCAACTTTTTGGGGTCAGTACAAACTTTGAttt > 1:16042161/1‑35 (MQ=255) gTCCAACTTTTTGGGGTCAGTACAAACTTTGAttt < 1:5508699/35‑1 (MQ=255) tCCAACTTTTTGGGGTCAGTACAAACTTTGATTta < 1:1091219/35‑1 (MQ=255) tCCAACTTTTTGGGGTCAGTACAAACTTTGATTta > 1:14579969/1‑35 (MQ=255) ccAACTTTTTGGGGTCAGTACAAACTTTGATTtat > 1:2881013/1‑35 (MQ=255) ccAACTTTTTGGGGTCAGTACAAACTTTGATTtat > 1:4693686/1‑35 (MQ=255) cAACTTTTTGGGGTCAGTACAAACTTTGATTtata > 1:1915204/1‑35 (MQ=255) aaCTTTTTGGTGTCAGTACAAACTTTGATTTATAg > 1:18026841/1‑35 (MQ=255) aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAg < 1:18139721/35‑1 (MQ=255) aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAg < 1:20145590/35‑1 (MQ=255) aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAg < 1:3517686/35‑1 (MQ=255) aCTTTTTGGGGTCAGTACAAACTTTGATTTATAGt < 1:16326421/35‑1 (MQ=255) aCTTTTTGGGGTCAGTACAAACTTTGATTTATAGt < 1:2308921/35‑1 (MQ=255) aCTTTTTGGGGTCAGTACAAACTTTGATTTATAGt > 1:11772182/1‑35 (MQ=255) cTTTTTGGGGTCAGTACAAACTTTGATTTATAGTc > 1:16051952/1‑35 (MQ=255) cTTTTTGGGGTCAGTACAAACTTTGATTTATAGTc > 1:18902919/1‑35 (MQ=255) cTTTTTGGGGTCAGTACAAACTTTGATTTATAGTc > 1:13120606/1‑35 (MQ=255) tttttGGGGTCAGTACAAACTTTGATTTATAGTCa < 1:8695499/35‑1 (MQ=255) ttttGGGGTCAGTACAAACTTTGATTTATAGTCAg < 1:18340144/35‑1 (MQ=255) ttttGGGGTCAGTACAAACTTTGATTTATAGTCAg < 1:17990599/35‑1 (MQ=255) tttGGGGTCAGTACAAACTTTGATTTATAGTCAgg < 1:12060688/35‑1 (MQ=255) tttGGGGTCAGTACAAACTTTGATTTATAGTCAgg < 1:14728234/35‑1 (MQ=255) tttGGGGTCAGTACAAACTTTGATTTATAGTCAgg > 1:2167411/1‑35 (MQ=255) tttGGGGTCAGTACAAACTTTGATTTATAGTCAgg < 1:19738911/35‑1 (MQ=255) tttGGGGTCAGTACAAACTTTGATTTATAGTCAgg < 1:20337575/35‑1 (MQ=255) ttGGGGTCAGTACAAACTTTGATTTATAGTCAGGt < 1:12962976/35‑1 (MQ=255) ttGGGGTCAGTACAAACTTTGATTTATAGTCAGGt < 1:4112754/35‑1 (MQ=255) tGGGGTCAGTACAAACTTTGATTTATAGTCAGGTg < 1:8855925/35‑1 (MQ=255) tGGGGTCAGTACAAACTTTGATTTATAGTCAGGTg > 1:9392748/1‑35 (MQ=255) tGGGGTCAGTACAAACTTTGATTTATAGTCAGGTg > 1:10023995/1‑35 (MQ=255) ggggTCAGTACAAACTTTGATTTATAGTCAGGTgg > 1:12154059/1‑35 (MQ=255) gggTCAGTACAAACTTTGATTTATAGTCAGGTggg > 1:6161140/1‑35 (MQ=255) ggTCAGTACAAACTTTGATTTATAGTCAGGTgggg < 1:19392191/35‑1 (MQ=255) ggTCAGTACAAACTTTGATTTATAGTCAGGTgggg > 1:17359466/1‑35 (MQ=255) gTCAGTACAAACTTTGATTTATAGTCAGGTGGGGc > 1:20223661/1‑35 (MQ=255) gTCAGTACAAACCTTGATTTATAGTCAGGTGGGGc < 1:9841823/35‑1 (MQ=255) tCAGTACAAACTTTGATTTATAGTCAGGTGGGGCt > 1:12948715/1‑35 (MQ=255) tCAGTACAAACTTTGATTTATAGTCAGGTGGGGCt < 1:9773238/35‑1 (MQ=255) tCAGTACAAACTTTGATTTATAGTCAGGTGGGGCt < 1:19403271/35‑1 (MQ=255) tCAGTACAAACTTTGATTTATAGTCAGGTGGGGCt < 1:19405325/35‑1 (MQ=255) tCAGTACAAACTTTGATTTATAGTCAGGTGGGGCt < 1:13184045/35‑1 (MQ=255) tCAGTACAAACTTTGATTTATAGTCAGGTGGGGCt > 1:11412078/1‑35 (MQ=255) cAGTACAAACTTTGATTTATAGTCAGGTGGGGCtt > 1:5809715/1‑35 (MQ=255) cAGTACAAACTTTGATTTATAGTCAGGTGGGGCtt > 1:8932020/1‑35 (MQ=255) cAGTACAAACTTTGATTTATAGTCAGGTGGGGCtt < 1:11192931/35‑1 (MQ=255) cAGTACAAACTTTGATTTATAGTCAGGTGGGGCtt > 1:16367333/1‑35 (MQ=255) aGTACAAACTTTGATTTATAGTCAGGTGGGTCttt > 1:18724555/1‑35 (MQ=255) aGTACAAACTTTGATTTATAGTCAGGTGGGGCttt > 1:15823963/1‑35 (MQ=255) aGTACAAACTTTGATTTATAGTCAGGTGGGGCttt < 1:16063626/35‑1 (MQ=255) aGTACAAACTTTGATTTATAGTCAGGTGGGGCttt < 1:19819840/35‑1 (MQ=255) gTACAAACTTTGATTTATAGTCAGGTGGGGCtttt < 1:14117258/35‑1 (MQ=255) gTACAAACTTTGATTTATAGTCAGGTGGGGCtttt < 1:16802641/35‑1 (MQ=255) tACAAACTTTGATTTATAGTCAGGTGGGGCTTTtc < 1:10460608/35‑1 (MQ=255) tACAAACTTTGATTTATAGTCAGGTGGGGCTTTtc < 1:8341216/35‑1 (MQ=255) tACAAACTTTGATTTATAGTCAGGTGGGGCTTTtc < 1:5826271/35‑1 (MQ=255) aCAAACTTTGATTTATAGTCAGGTGGGGCtttttt > 1:14996337/1‑33 (MQ=255) aCAAACTTTGATTTATAGTCAGGTGGGGCTTTtct < 1:812155/35‑1 (MQ=255) aCAAACTTTGATTTATAGTCAGGTGGGGCTTTtct < 1:8672472/35‑1 (MQ=255) aCAAACTTTGATTTATAGTCAGGTGGGGCTTTtct > 1:14623740/1‑35 (MQ=255) aCAAACTTTGATTTATAGTCAGGTGGGGCTTTtct > 1:171295/1‑35 (MQ=255) aCAAACTTTGATTTATAGTCAGGTGGGGCTTTtct > 1:3463600/1‑35 (MQ=255) aCAAACTTTGATTTATAGTCAGGTGGGGCTTTtct > 1:17655707/1‑35 (MQ=255) cAAACTTTGATTTATAGTCAGGTGGGGCTTTtctc < 1:2644758/35‑1 (MQ=255) cAAACTTTGATTTATAGTCAGGTGGGGCTTTtctc > 1:9299535/1‑35 (MQ=255) aaaCTTTGATTTATAGTCAGGTGGGGCTTTTctct > 1:7552206/1‑35 (MQ=255) aaaCTTTGATTTATAGTCAGGTGGGGCTTTTctct < 1:5292731/35‑1 (MQ=255) aaaCTTTGATTTATAGTCAGGTGGGGCTTTTctct < 1:14351732/35‑1 (MQ=255) | GTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCT > REL606/3652502‑3652567 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |