New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2532852 = | 62 (0.600) | 3 (0.040) | 3/40 | NT | 4.7% | coding (127/2007 nt) | hyfR | DNA‑binding transcriptional activator, formate sensing |
? | REL606 | 4530131 = | 69 (0.810) | coding (410/903 nt) | fimH | minor component of type 1 fimbriae |
Only 100 of 130 total aligned reads displayed.
GTGGCGCTTTATTTGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGCC > REL606/4530097‑4530165 | gTGGCGCTTTATTTGACGCCTGTGAGCAGTgcggg < 1:7778830/35‑1 (MQ=255) gTGGCGCTTTATTTGACGCCTGTGAGCAGTgcggg < 1:2448204/35‑1 (MQ=255) ttcaataagttgtaccgggctgaacggcggggggg > 1:7744493‑M2/34‑34 (MQ=255) ttcaataagttgtaccgggctgaacggcgggggga > 1:4892402‑M2/34‑34 (MQ=255) ttcaataagttgtaccgggctgaacggcggcgggg > 1:15850381‑M2/34‑34 (MQ=255) ttcaataagttgtaccgggctgaacggcggcgggg > 1:15367478‑M2/34‑34 (MQ=255) ttcaataagttgtaccgggctgaacggcggcgggc > 1:796138‑M2/34‑35 (MQ=255) tGGCGCTTTATTTGACGCCTGTGAGCAGTgtgggc < 1:11739081/35‑1 (MQ=255) tGGCGCTTTATTTGACGCCTGTGAGCAGTgcgggc < 1:8748418/35‑1 (MQ=255) tGGCGCTTTATTTGACGCCTGTGAGCAGTgcgggc < 1:13138078/35‑1 (MQ=255) tGGCGCTTTATTTGACGCCTGTGAGCAGTgcgggc < 1:11950320/35‑1 (MQ=255) tGGCGCTTTATTTGACGCCTGTGAGCAGTgcgggc < 1:11731409/35‑1 (MQ=255) tGGCGCTTTATTTGACGCATGTGAGCAGTgcgggc < 1:740008/35‑1 (MQ=255) tcaataagttgtaccgggctgaacggcggcggggg > 1:5901981‑M2/33‑33 (MQ=255) tcaataagttgtaccgggctgaacggcggcgggag > 1:6671856‑M2/33‑33 (MQ=255) ggCGCTTTATTTGACGCCTGTGAGCAGTgcgggcg > 1:17672291/1‑35 (MQ=255) gggcTGTATTTGACGCCTGTGGGCAGTtcgggcgg < 1:8719629/33‑1 (MQ=21) gcgcTTTATTTGACGCCTGTGAGCAGTgcgggcgg < 1:13826766/35‑1 (MQ=255) aataagttgtaccgggctgaacggcggcgggaggg > 1:11302816‑M2/31‑35 (MQ=255) gcTTTATTTGACGCCTGTGAGCAGTGCGGGCgggg > 1:6091568/1‑35 (MQ=255) gcTTTATCTGACGCCTGTGAGCAGTGCGGGCgggg > 1:87640/1‑35 (MQ=255) ataagttgtaccgggctgaacggcggcggGGgggg > 1:13811607‑M2/30‑35 (MQ=255) cTTTATTTGACGCCTGTGAGCAGTGCGGGCggggg > 1:8762683/1‑35 (MQ=255) cTTTATTTGACGCCTGTGAGCAGTGCGGGCggggg > 1:10372524/1‑35 (MQ=255) tttATTTGACGCCTGTGAGCAGTGTGGGCgggggg < 1:8340646/35‑1 (MQ=255) tttATTTGACGCCTGTGAGCAGTGCGGGCgggggg < 1:7627447/35‑1 (MQ=255) ttATTTTACGCCTGTGAGCAGTGCGGGCggggggg > 1:13473553/1‑35 (MQ=255) ttATTTGACGCCTGTGAGCAGTGCGGGCggggggg > 1:13876416/1‑35 (MQ=255) ttATTTGACGCCTGTGAGCAGTGCGGGCggggggg > 1:12346784/1‑35 (MQ=255) ttATTTGACGCCTGTGAGCAGTGCGGGCggggggg < 1:14940928/35‑1 (MQ=255) ttATTTGACGCCTGTGAGCAGTGCGGGCggggggg > 1:7196325/1‑35 (MQ=255) agttgtaccgggctgaacggcggcggGCggggggg > 1:4744017‑M2/27‑35 (MQ=255) tATTTGACGCCTGTGAGCAGTGCGGGCGGGGGGGc < 1:16484466/35‑1 (MQ=255) aTTTGACGCCTGTGAGCAGTGCGGGCGGGGGGGCg < 1:14643640/35‑1 (MQ=255) aTTTGACGCCTGTGAGCAGTGCGGGCGGGGGGGCg > 1:1802559/1‑35 (MQ=255) aTTTGACGCCTGTGAGCAGTGCGGGCGGGGGGGCg > 1:7694776/1‑35 (MQ=255) tttGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGa < 1:4730087/35‑1 (MQ=255) tttGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGa < 1:11192071/35‑1 (MQ=255) tgtaccgggctgaacggcggcggGCGGGGGGGGGa > 1:8961613‑M2/24‑35 (MQ=255) ttGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAt > 1:15540289/1‑35 (MQ=255) ttGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAt < 1:5842269/35‑1 (MQ=255) ttGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAt < 1:17203640/35‑1 (MQ=255) ttGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAt > 1:7294753/1‑35 (MQ=255) tGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAtt > 1:10642299/1‑35 (MQ=255) tGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAtt < 1:11087406/35‑1 (MQ=255) tGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAtt < 1:15923151/35‑1 (MQ=255) tGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAtt < 1:15986205/35‑1 (MQ=255) tGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAtt < 1:15898/35‑1 (MQ=255) tGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAtt > 1:14575015/1‑35 (MQ=255) gACGCCTGTGAGCAGTGCGGGCGGGGGGGCGATTa > 1:7823788/1‑35 (MQ=255) aCGCCTGTGAGCAGTGCGGGCGGGGGGGCGATTaa < 1:18438576/35‑1 (MQ=255) aCGCCTGTGAGCAGTGCGGGCGGGGGGGCGATTaa < 1:12809315/35‑1 (MQ=255) cGCCTGTGAGCAGTGCGGGCGGGGGGGCGATTaaa < 1:9185322/35‑1 (MQ=255) gCCTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAg < 1:7044164/35‑1 (MQ=255) gCCTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAg < 1:367224/35‑1 (MQ=255) ccTGTGAGCAGTGCGTGCGGGGGGGCGATTAAAGc > 1:19647579/1‑35 (MQ=255) ccTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAGc > 1:12555677/1‑35 (MQ=255) ccTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAGc > 1:11271639/1‑35 (MQ=255) cTGTGAGCAGTGCGGGCGGGGGGGCGATTAAATCt < 1:11282296/35‑1 (MQ=255) cTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAGCt > 1:6803872/1‑35 (MQ=255) cTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAGCt < 1:17058750/35‑1 (MQ=255) cTGTGAGCAGTGCGGGCGGGGGGGCGAGTAAAGca > 1:14786692/1‑34 (MQ=255) tgtgAGCAGTGCGGGCGGGGGGGCGATTAAAGCTg < 1:4339841/35‑1 (MQ=255) tgtgAGCAGTGCGGGCGGGGGGGCGATTAAAGCTg > 1:2282980/1‑35 (MQ=255) gtgAGCAGTGCGGGCGGGGGGGCGATTAAAGCTgg > 1:14269002/1‑35 (MQ=255) gtgAGCAGTGCGGGCGGGGGGGCGATTAAAGCTgg < 1:7031607/35‑1 (MQ=255) tgAGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGc < 1:9800727/35‑1 (MQ=255) taGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCt < 1:2465070/34‑1 (MQ=255) gAGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCt > 1:11607284/1‑35 (MQ=255) gAGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCt < 1:418769/35‑1 (MQ=255) aGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTc > 1:9625046/1‑35 (MQ=255) aGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTc > 1:13591693/1‑35 (MQ=255) aGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTc < 1:19515046/35‑1 (MQ=255) gCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCa > 1:2330392/1‑35 (MQ=255) gCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCa < 1:12163455/35‑1 (MQ=255) gCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCa < 1:4046682/35‑1 (MQ=255) gCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCa > 1:8756981/1‑35 (MQ=255) aGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCAtt < 1:11923592/35‑1 (MQ=255) aGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCAtt > 1:5613391/1‑35 (MQ=255) aGTGAGGGCGGGGGGGCGATTAAAGCTGGCTCAtt < 1:16077209/35‑1 (MQ=255) gTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTa > 1:4745604/1‑35 (MQ=255) gTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTa < 1:9577704/35‑1 (MQ=255) gTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTa < 1:9068432/35‑1 (MQ=255) gTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTa > 1:13424942/1‑35 (MQ=255) gTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTa < 1:168580/35‑1 (MQ=255) tGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTaa < 1:20124601/35‑1 (MQ=255) gcggGCGGGGGGGCGATTAAAGCTGGCTCATTAAt < 1:7817126‑M2/31‑1 (MQ=255) cggGCGGGGGGGCGATTAAAGCTGGCTCATTAAtt < 1:16560927‑M2/32‑1 (MQ=255) cggGCGGGGGGGCGATTAAAGCTGGCTCATTAAtt < 1:18886377‑M2/32‑1 (MQ=255) cggGCGGGGGGGCGATTAAAGCTGGCTCATTAAtt > 1:3534207‑M2/4‑35 (MQ=255) cggGCGGGGGGGCGATTAAAGCTGGCTCATTAAtt > 1:6782857‑M2/4‑35 (MQ=255) ggGCGGGGGGGCGATTAAAGCTGTCTCATTAATTg > 1:6604039‑M2/3‑35 (MQ=255) ggGCGGGGGGGCGATTAAAGCTGGCTCATTAATTg > 1:20171663‑M2/3‑35 (MQ=255) ggGCGGGGGGGCGATTAAAGCTGGCTCATTAATTg < 1:5178215‑M2/33‑1 (MQ=255) gGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGc < 1:17725739‑M2/34‑1 (MQ=255) gGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGc > 1:5574841‑M2/2‑35 (MQ=255) gGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGc < 1:20233775‑M2/34‑1 (MQ=255) gGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGc < 1:6451277‑M2/34‑1 (MQ=255) gGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGc > 1:9214707‑M2/2‑35 (MQ=255) gcgggGGGGCGATTAAAGCTGGCTCATTAATTGcc > 1:4515992/1‑35 (MQ=255) | GTGGCGCTTTATTTGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGCC > REL606/4530097‑4530165 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |