New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 422127 = | 69 (0.670) | 8 (0.120) | 4/32 | NT | 15.8% | coding (187/948 nt) | cyoA | cytochrome o ubiquinol oxidase subunit II |
? | REL606 | 4480474 = | 39 (0.570) | coding (497/1191 nt) | intB | predicted integrase |
Only 100 of 167 total aligned reads displayed.
TTATTGCTCGCACGATACTTCCAGGCGAAACCAACAGCCATCAAGATTGCGGGAATAACGACAATCAAC > REL606/422093‑422161 | ttATTGCTGGCACGATACTTCCAGGCGAAACCAAc < 1:8522578/35‑1 (MQ=255) ttATTGCTCGCACGATACTTCCAGGCGAAACCAAc < 1:8739505/35‑1 (MQ=255) ttATTGCTCGCACGATACTTCCAGGCGAAACCAAc < 1:19544127/35‑1 (MQ=255) ttATTGCTCGCACGATACTTCCAGGCGAAACCAAc < 1:2816288/35‑1 (MQ=255) ttATTGCTCGCACGATACTTCCAGGCGAAACCAAc > 1:7426014/1‑35 (MQ=255) tATTGCTCGCACGATACTTCCAGGCGAAACCAACa < 1:10057632/35‑1 (MQ=255) tATTGCTCGCACGATACTTCCAGGCGAAACCAACa > 1:10157745/1‑35 (MQ=255) tATTGCTCGCACGATACTTCCAGGCGAAACCAACa < 1:3324766/35‑1 (MQ=255) acgatgttgtcgattacaggaagcaaccgcccCAg < 1:12637170‑M1/3‑1 (MQ=255) aTTGCTCGCACGATACTTCCAGGCGAAACCAACAg < 1:13859182/35‑1 (MQ=255) aTTGCTCGCACGATACTTCCAGGCGAAACCAACAg < 1:11502453/35‑1 (MQ=255) ttGCTCGCACGATACTTCCAGGCGAAACCAACAGc > 1:1944696/1‑35 (MQ=255) ttGCTCGCACGATACTTCCAGGCGAAACCAACAGc > 1:8437127/1‑35 (MQ=255) ttGCTCGCACGATACTTCCAGGCGAAACCAACAGc > 1:15612521/1‑35 (MQ=255) ttGCTCGCACGATACTTCCAGGCGAAACCAACAGc > 1:14726295/1‑35 (MQ=255) ttGCTCGCACGATACTTCCAGGCGAAACCAACAGc > 1:18598327/1‑35 (MQ=255) ttGCTCGCACGATACTTCCAGGCGAAACCAACAGc > 1:17891549/1‑35 (MQ=255) cgatgttgtcgattacagtaagcaaccgcccCAGc < 1:7191091‑M1/4‑1 (MQ=255) gCTCGCACGATACTTCCAGGCGAAACCAACAGCCa > 1:7988729/1‑35 (MQ=255) gCTCGCACGATACTTCCAGGCGAAACCAACAGCCa > 1:19591684/1‑35 (MQ=255) atgttgtctattacaggaagcaaccgcccCAGCCa < 1:1435247‑M1/6‑1 (MQ=255) atgttgtcgattacaggaagcaaccgcccCAGCCa < 1:1872209‑M1/6‑1 (MQ=255) atgttgtcgattacaggaagcaaccgcccCAGCCa < 1:6692275‑M1/6‑1 (MQ=255) cccGCACGATACTTCCAGGCGAAACCAACAGCCAt > 1:1658899/3‑35 (MQ=255) cTCGCACGATACTTCCAGGCGAAACCAACAGCCAt > 1:2632991/1‑35 (MQ=255) cTCGCACGATACTTCCAGGCGAAACCAACAGCCAt > 1:2627819/1‑35 (MQ=255) tCGCACGATACTTCCAGGCGAAACCAACAGCCATc > 1:1540253/1‑35 (MQ=255) tCGCACGATACTTCCAGGCGAAACCAACAGCCATc > 1:2471593/1‑35 (MQ=255) tCGCACGATACTTCCACGCGAAACCAACAGCCATc > 1:1083867/1‑35 (MQ=255) cGCACGATACTTCCAGGCGAAACCAACAGCCATCa > 1:4214745/1‑35 (MQ=255) cGCACGATACTTCCAGGCGAAACCAACAGCCATCa > 1:4513253/1‑35 (MQ=255) cGCACGATACTTCCAGGCGAAACCAACAGCCATCa > 1:17194664/1‑35 (MQ=255) gCACGATACTTCCAGGCTAAACCAACAGCCATCaa > 1:10929700/1‑35 (MQ=255) gCACGATACTTCCAGGCGAAACCAACAGCCATCaa > 1:19827/1‑35 (MQ=255) gCACGATACTTCCAGGCGAAACCAACAGCCATCaa > 1:13672363/1‑35 (MQ=255) cACGATACTTCCAGGCGAAACCAACAGCCATCAAg > 1:16255952/1‑35 (MQ=255) aCGATACTTCCAGGCGAAACCAACAGCCATCAAGa > 1:11170110/1‑35 (MQ=255) aCGATACTTCCAGGCGAAACCAACAGCCATCAAGa > 1:4388656/1‑35 (MQ=255) gATACTTCCAGGCGAAACCAACAGCCATCAAGAtt > 1:12621365/1‑35 (MQ=255) gATACTTCCAGGCGAAACCAACAGCCATCAAGAtt > 1:1301741/1‑35 (MQ=255) gATACTTCCAGGCGAAACCAACAGCCATCAAGAtt > 1:3006549/1‑35 (MQ=255) aTACTTCCAGGCGAAACCAACAGCCATCAAGATTg > 1:14381100/1‑35 (MQ=255) aCTTCCAGGCGAAACCAACAGCCATCAAGATTGct > 1:11326532/1‑34 (MQ=255) cTTCCAGGCGAAACCAACAGCCATCAAGATTGCgg > 1:8027419/1‑35 (MQ=255) cTTCCAGGCGAAACCAACAGCCATCAAGATTGCgg > 1:8337530/1‑35 (MQ=255) cTTCCAGGCGAAACCAACAGCCATCAAGATTGCgg > 1:5766592/1‑35 (MQ=255) ttCCAGGCGAAACCAACAGCCATCAAGATTGCgtg > 1:1686845/1‑33 (MQ=255) ccAGGCGAAACCAACAGCCATCAAGATTGCGGGaa > 1:14970411/1‑35 (MQ=255) ccAGGCGAAACCAACAGCAATCAAGATTGCGGGaa < 1:3616303/35‑1 (MQ=255) cAGGCGAAACCAACAGCCATCAAGATTGCGGGAAt > 1:11058293/1‑35 (MQ=255) cAGGCGAAACCAACAGCCATCAAGATTGCGGGAAt > 1:5432850/1‑35 (MQ=255) aGGCGAAACCAACAGCCATCAAGATTGCGGGAATa > 1:9852720/1‑35 (MQ=255) aGGCGAAACCAACAGCCATCAAGATTGCGGGAATa > 1:6936069/1‑35 (MQ=255) gcaaccccccCAGCCATCAAGATTGCGGGAATAAc > 1:16715812‑M1/11‑35 (MQ=255) gCGAAACCAACAGCCATCAAGATTGCGGGAATAAc > 1:1674434/1‑35 (MQ=255) gCGAAACCAACAGCCATCAAGATTGCGGGAATAAc > 1:15999186/1‑35 (MQ=255) gCGAAACCAACAGCCATCAAGATTGCGGGAATAAc > 1:3305854/1‑35 (MQ=255) gCGAAACCAACAGCCATCAAGATTGCGGGAATAAc > 1:10360798/1‑35 (MQ=255) ccaaccccccCAGCCATCAAGATTGCGGGAATAAc > 1:6237070‑M1/11‑35 (MQ=255) caaccccccCAGCCATCAAGATTGCGGGAATAACg > 1:616367‑M1/10‑35 (MQ=255) cGAAACCAACAGCCATCAAGATTGCGGGAATAACg > 1:15203282/1‑35 (MQ=255) cGAAACCAACAGCCATCAAGATTGCGGGAATAACg > 1:8446069/1‑35 (MQ=255) gAAACCAACAGCCATCAACATTGCGGGAATAACGa > 1:9736560/1‑35 (MQ=255) gAAACCAACAGCCATCAACATTGCGGGAATAACGa > 1:1348067/1‑35 (MQ=255) aaccccccCAGCCATCAAGATTGCGGGAATAACGa > 1:3376620‑M1/9‑35 (MQ=255) accccccCAGCCATCAAGATTGCGGGAATAACGAc > 1:8049433‑M1/8‑35 (MQ=255) acccccCAGCCATCAAGATTGCGGGAATAACGACa > 1:18563728‑M1/7‑35 (MQ=255) aaCCAACAGCCATCAAGATTGCTGGAATAACGACa > 1:18330065/1‑35 (MQ=255) aaCCAACAGCCATCAAGATTGCGGGAATAACGACa > 1:19175755/1‑35 (MQ=255) aaCCAACAGCCATCAAGATTGCGGGAATAACGACa > 1:12183427/1‑35 (MQ=255) aaCCAACAGCCATCAAGATTGCGGGAATAACGACa > 1:4783709/1‑35 (MQ=255) aaCCAACAGCCATCAAGATTGCGGGAATAACGACa > 1:2040695/1‑35 (MQ=255) cccccCAGCCATCAAGATTGCGGGAATAACGACaa > 1:1885167‑M1/6‑35 (MQ=255) cccccCAGCCATCAAGATTGCGGGAATAACGACaa > 1:6131121‑M1/6‑35 (MQ=255) cccccCAGCCATCAAGATTGCGGGAATAACGACaa > 1:2950493‑M1/6‑35 (MQ=255) aCCAACAGCCATCAAGATTGCGGGAATAACGACaa > 1:778457/1‑35 (MQ=255) aCCAACAGCCATCAAGATTGCGGGAATAACGACaa > 1:2649075/1‑35 (MQ=255) ccccCAGCCATCAAGATTGCGGGAATAACGACAAt > 1:15233919‑M1/5‑35 (MQ=255) ccccCAGCCATCAAGATTGCGGGAATAACGACAAt > 1:5742913‑M1/5‑35 (MQ=255) ccAACAGCCATCAAGATTGCGGGAATAACGACAAt > 1:14295868/1‑35 (MQ=255) ccAACAGCCATCAAGATTGCGGGAATAACGACAAt > 1:15889480/1‑35 (MQ=255) ccAACAGCCATCAAGATTGCGGGAATAACGACAAt > 1:10733240/1‑35 (MQ=255) ccAACAGCCATCAAGATTGCGGGAATAACGACAAt > 1:2113288/1‑35 (MQ=255) ccAACAGCCATCAAGATTGCGGGAATAACGACAAt > 1:1993628/1‑35 (MQ=255) ccAACAGCCATCAAGATTGCGGGAATAACGACAAt > 1:5074394/1‑35 (MQ=255) cccCAGCCATCAAGATTGCGGGAATAACGACAATc > 1:584637‑M1/4‑35 (MQ=255) cccCAGCCATCAAGATTGCGGGAATAACGACAATc > 1:15346050‑M1/4‑35 (MQ=255) cAACAGCCATCAAGATTGCGGGAATAACGACAATc > 1:2325535/1‑35 (MQ=255) cAACAGCCATCAAGATTGCGGGAATAACGACAATc > 1:18031052/1‑35 (MQ=255) ccCAGCCATCAAGATTGCGGGAATAACGACAATCa > 1:8979982‑M1/3‑35 (MQ=255) aaCAGCCATCAAGATTGCGGGAATAACGACAATCa > 1:10512218/1‑35 (MQ=255) aaCAGCCATCAAGATTGCGGGAATAACGACAATCa > 1:4127781/1‑35 (MQ=255) cCAGCCATCAAGATTGCGGGAATAACGACAATCaa > 1:6552802‑M1/2‑35 (MQ=255) cCAGCCATCAAGATTGCGGGAATAACGACAATCaa > 1:16716276‑M1/2‑35 (MQ=255) aCAGCCATCAAGATTGCGGGAATAACGACAATCaa > 1:691209/1‑35 (MQ=255) aCAGCCATCAAGATTGCGGGAATAACGACAATCaa > 1:19137549/1‑35 (MQ=255) CAGCCATCAAGATTGCGGGAATAACGACAATCAAc < 1:6443620‑M1/35‑1 (MQ=255) CAGCCATCAAGATTGCGGGAATAACGACAATCAAc < 1:4403221‑M1/35‑1 (MQ=255) CAGCCATCAAGATTGCGGGAATAACGACAATCAAc < 1:19928724‑M1/35‑1 (MQ=255) CAGCCATCAAGATTGCGGGAATAACGACAATCAAc > 1:15252426‑M1/1‑35 (MQ=255) | TTATTGCTCGCACGATACTTCCAGGCGAAACCAACAGCCATCAAGATTGCGGGAATAACGACAATCAAC > REL606/422093‑422161 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |