New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3744020 | 103 (1.000) | 12 (0.160) | 5/36 | NT | 18.0% | coding (300/807 nt) | waaP | kinase that phosphorylates core heptose of lipopolysaccharide |
? | REL606 | = 3861481 | 32 (0.420) | coding (1109/1617 nt) | yieC | carbohydrate‑specific outer membrane porin, cryptic |
AAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCAACCAGGAAGGAGAA > REL606/3861447‑3861515 | aaaTGGACTTGCGCCAGCATAACGGCCAAAGTTAc > 1:19690124/1‑35 (MQ=255) aaaTGGACTTGCGCCAGCATAACGGCCAAAGTTAc > 1:9709309/1‑35 (MQ=255) aaaTGGACTTGCGCCAGCATAACGGCCAAAGTTAc > 1:87505/1‑35 (MQ=255) aaaTGGACTTGCGCCAGCATAACGGCCAAAGTTAc > 1:8250793/1‑35 (MQ=255) aaaTGGACTTGCGCCAGCATAACGGCCAAAGTTAc > 1:14748443/1‑35 (MQ=255) aaTGGACTTGCGCCAGCATAACGGCCAAAGTTACt < 1:10525088‑M2/35‑2 (MQ=255) aaTGGACTTGCGCCAGCATAACGGCCAAAGTTACt < 1:11470161‑M2/35‑2 (MQ=255) aaTGGACTTGCGCCAGCATAACGGCCAAAGTTACt < 1:16946738‑M2/35‑2 (MQ=255) aaTGGACTTGCGCCAGCATAACGGCCAAAGTTACt < 1:13255478‑M2/35‑2 (MQ=255) aTGGACTTGCGCCAGCATAACGGCCAAAGTTACtg < 1:9198563‑M2/35‑3 (MQ=255) aTGGACTTGCGCCAGCATAACGGCCAAAGTTACtg < 1:3366782‑M2/35‑3 (MQ=255) ggACTTGCGCCAGCATAACGGCCAAAGTTACtggc < 1:7624693‑M2/35‑5 (MQ=255) gACTTGCGCCAGCATAACGGCCAAAGTTACtggcg < 1:15704406‑M2/35‑6 (MQ=255) gACTTGCGCCAGCATAACGGCCAAAGTTACtggcg < 1:12886206‑M2/35‑6 (MQ=255) gACTTGCGCCAGCATAACGGCCAAAGTTACtggcg < 1:9992224‑M2/35‑6 (MQ=255) aCTTGCGCCAGCATAACGGCCAAAGTTACtggcga < 1:5336511‑M2/35‑7 (MQ=255) aCTTGCGCCAGCATAACGGCCAAAGTTACtggcga < 1:4016063‑M2/35‑7 (MQ=255) aCTTGCGCCAGCATAACGGCCAAAGTTACtggcga < 1:12984081‑M2/35‑7 (MQ=255) cTTGCGCCAGCATAACGGCCAAGGTTACtggcgaa < 1:19984311‑M2/35‑8 (MQ=255) cTTGCGCCAGCATAACGGCCAAAGTTACtggcgaa < 1:19282223‑M2/35‑8 (MQ=255) ttGCGCCAGCATAACGGCCAAAGTTACtggcgaaa < 1:13961320‑M2/35‑9 (MQ=255) ttGCGCCAGCATAACGGCCAAAGTTACtggcgaaa < 1:13106335‑M2/35‑9 (MQ=255) tGCGCCAGCATAACGGCCAAAGTTACtggcgaaaa < 1:17317863‑M2/35‑10 (MQ=255) tGCGACAGAAAACCGGCCAAAGTTACTGGCGATag < 1:8173119/35‑1 (MQ=19) tGCCCCACCAAACCGGCCAAAGTTACTGGCGATag < 1:7775159/35‑1 (MQ=19) gcgcCAGCATAACGGCCAAAGTTACtggcgaaaaa < 1:16228844‑M2/35‑11 (MQ=255) gcgcCAGCATAACGGCAAAAGTTACTGGCGATaga < 1:20049748/35‑1 (MQ=255) cgcCAGCATAACGGCCAAAGTTACtggcgaaagag < 1:10199160‑M2/35‑12 (MQ=255) cgcCAGCATAACGGCCAAAGTTACtggcgaaaaag < 1:7147422‑M2/35‑12 (MQ=255) cgcCAGCATAACGGCCAAAGTTACtggcgaaaaag < 1:6257711‑M2/35‑12 (MQ=255) gcCAGCATACCGGCCAAAGTTACTGGCGATAGAGt < 1:15357031/35‑1 (MQ=255) gcCAGCATAACGGCCAAAGTTACtggcgaaagagg < 1:1746938‑M2/35‑13 (MQ=255) cccAGCATACCGGCCAAAGTTACTGGCGATAGAGt < 1:15368686/34‑1 (MQ=255) cccAGCATACCGGCCAAAGTTACTGGCGATAGAGt < 1:2633277/34‑1 (MQ=255) ccAGCATAACGGCCAAAGTTACtggcgaaagaggt < 1:9666948‑M2/35‑14 (MQ=255) ccAGCATAACGGCCAAAGTTACtggcgaaaaagtt < 1:17470844‑M2/35‑14 (MQ=255) ccAGCATAACGGCCAAAGTTACtggcgaaaaaggt < 1:6103116‑M2/35‑14 (MQ=255) cAGCATACCGGCCAAAGTTACTGGCGATAGAGTTa < 1:9473297/35‑1 (MQ=255) cAGCATACCGGCCAAAGTTACTGGCGATAGAGTTa < 1:4538669/35‑1 (MQ=255) cAGCATAACGGCCAAAGTTACtggcgaaagaggta < 1:5926643‑M2/35‑15 (MQ=255) cAGCATAACGGCCAAAGTTACtggcgaaaaaggta < 1:16702662‑M2/35‑15 (MQ=255) cAGCATAACGGCCAAAGTTACTGGCGATAGAGGTa > 1:6429199/1‑35 (MQ=255) cAGCATAACGGCCAAAGTTACTGGCGATAAAGCTa > 1:4455240/1‑35 (MQ=37) agaaTACCGGCCAAAGTTACTGGCGATAGAGTTAt < 1:17557385/32‑1 (MQ=37) agaaTAACGGACAAAGTTACTGGCGATAGAGTTAt < 1:19634841/32‑1 (MQ=37) aGCATAACGGCCAAAGTTACtggcgaaaaaggtat < 1:2366219‑M2/35‑16 (MQ=255) aGCATAACGGCCAAAGTTACtggcgaaaaaggtat < 1:5219984‑M2/35‑16 (MQ=255) aGCAAACCGGCCAAAGTTACTGGCGATAGAGTTAt < 1:17191587/35‑1 (MQ=37) gCATAACGGCCAAAGTTACtggcgaaaaaggtatt < 1:8202667‑M2/35‑17 (MQ=255) gCATAACGGCCAAAGTTACtggcgaaaaaagtatt < 1:8569694‑M2/35‑17 (MQ=255) cATACCGGCCAAAGTTACTGGCGATAGAGTTATTc < 1:11530613/35‑1 (MQ=255) cATAACGGCCAAAGTTACtggcgaaaaagttattt < 1:3771477‑M2/35‑18 (MQ=255) cATAACGGCCAAAGTTACtggcgaaaaaggtattt < 1:19699406‑M2/35‑18 (MQ=255) aTAACGGCCAAAGTTACtggcgaaaaaggtatttg < 1:18448402‑M2/35‑19 (MQ=255) tAACGGCCAAAGTTACTGGCGAAAGAGGTAttttc > 1:956949/1‑32 (MQ=25) tAACGGCCAAAGTTACTGGCGAAAAAGATAttttc > 1:10441143/1‑32 (MQ=16) caccGGCCAAAGTTACTGGCGATAGAGTTATTCGc < 1:16197776/32‑1 (MQ=255) accGGCCAAAGTTACTGGCGATAGAGTTATTCGCa < 1:15311667/33‑1 (MQ=255) accGGCCAAAGTTACTGGCGATAGAGTTATTCGCa < 1:13066086/33‑1 (MQ=255) accGGCCAAAGTTACTGGCGATAGAGTTATTCGCa < 1:12038192/33‑1 (MQ=255) aaCGGCCAAAGTTACTGGCGAAAAAGATATTTGCa > 1:17662308/1‑35 (MQ=19) ccGGCCAAAGTTACTGGCGATAGAGTTATTCGCaa < 1:19519249/34‑1 (MQ=255) aCGGCCAAAGTTACTGGCGAAAAAGGTTTTTGCaa > 1:769415/1‑35 (MQ=12) cGGCCAAAGTTACTGGCGATAGAGTTATTCGCAAc < 1:13084863/35‑1 (MQ=255) cGGCCAAAGTTACTGGCGATAGAGTTATTCGCAAc < 1:7610841/35‑1 (MQ=255) gCCAAAGTTACTGGCGATAGAGTTATTCGCAACCa < 1:8322125/35‑1 (MQ=255) ccAAAGTTACTGGCGATAGAGTTATTCGCAACCag < 1:2302088/35‑1 (MQ=255) ccAAAGTTACTGGCGATAGAGTTATTCGCAACCag < 1:7926384/35‑1 (MQ=255) cAAAGTTACTGGCGATAGAGTTATTCGCAACCagg < 1:1542927/35‑1 (MQ=255) cAAAGTTACTGGCGATAGAGTTATTCGCAACCagg < 1:18563997/35‑1 (MQ=255) cAAAGTTACTGGCGATAGAGTTATTCGCAACCagg < 1:5536852/35‑1 (MQ=255) aaaGTTACTGGCGATAGAGTTATTCGCAACCagga < 1:19440710/35‑1 (MQ=255) aaGTTACTGGCGATAGAGTTATTCGCAACCaggaa < 1:3161966/35‑1 (MQ=255) aaGTTACTGGCGATAGAGTTATTCGCAACCaggaa < 1:4915724/35‑1 (MQ=255) aGTTACTGGCGATAGAGTTATTCGCAACCaggaag < 1:17999081/35‑1 (MQ=255) ttACTGGCGATAGAGTTATTCGCAACCaggaagga < 1:3523994/35‑1 (MQ=255) ttACTGGCGATAGAGTTATTCGCAACCaggaagga < 1:5691619/35‑1 (MQ=255) ttACTGGCGATAGAGTTATTCGCAACCaggaagga < 1:7094520/35‑1 (MQ=255) ttACTGGCGATAGAGTTATTCGCAACCaggaagga < 1:7344407/35‑1 (MQ=255) aCTGGCGATAGAGTTATTCGCAACCAGGAAGgaga < 1:2274135/35‑1 (MQ=255) cTGGCGATAGAGTTATTCTCAACCAGGAAGGAGaa > 1:6295654/1‑35 (MQ=255) cTGGCGATAGAGTTATTCGCAACCAGGAAGGAGaa > 1:19337009/1‑35 (MQ=255) cTGGCGATAGAGTTATTCGCAACCAGGAAGGAGaa > 1:4333200/1‑35 (MQ=255) cTGGCGATAGAGTTATTCGCAACCAGGAAGGAGaa < 1:18491383/35‑1 (MQ=255) cTGGCGATAGAGTTATTCGCAACCAGGAAGGAGaa < 1:7217706/35‑1 (MQ=255) cTGGCGATAGAGTTATTCGCAACCAGGAAGGAGaa < 1:218788/35‑1 (MQ=255) | AAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCAACCAGGAAGGAGAA > REL606/3861447‑3861515 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |