New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 386696686 (0.840)18 (0.180) 8/46 NT 20.6% intergenic (‑32/+254) bglG/phoU transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
?REL606 = 3887469 56 (0.570)intergenic (‑105/‑47) asnC/asnA DNA‑binding transcriptional dual regulator/asparagine synthetase AsnA

Only 100 of 114 total aligned reads displayed.

AGGCTTTTTATTGAATGATTATTGCATGTGTGTCGGTTTTTGTTGCTTAATCATAAGCAACAGGACGCA  >  REL606/3887435‑3887503
                                   |                                  
aGGCTTTTTATTGAATGATTATTGCATGTGTGTCg                                    <  1:9927360/35‑1 (MQ=255)
aGGCTTTTTATTGAATGATTATTGCATGTGTGTCg                                    <  1:3318661/35‑1 (MQ=255)
aGGCTTTTTATTGAATGATTATTGCATGTGTGTCg                                    <  1:17374283/35‑1 (MQ=255)
aGGCTTTTTATTGAATGATTATTGCATGTGTGTCg                                    <  1:15047629/35‑1 (MQ=255)
aGGCTTTTTATTGAATGATTATTGCATGTGTGTCg                                    >  1:15038499/1‑35 (MQ=255)
 ggCTTTTTATTGAATGATTATTGCATGTGTGTCGg                                   <  1:9934208‑M2/35‑2 (MQ=255)
 ggCTTTTTATTGAATGATTATTGCATGTGTGTCGg                                   >  1:4120149‑M2/1‑34 (MQ=255)
 ggCTTTTTATTGAATGATTATTGCATGTGTGTCGg                                   <  1:3360381‑M2/35‑2 (MQ=255)
 ggCTTTTTATTGAATGATTATTGCATGTGTGTCGg                                   >  1:10710946‑M2/1‑34 (MQ=255)
 ggCTTTTTATTGAATGATTATTGCATGTGTGTCGg                                   <  1:17180400‑M2/35‑2 (MQ=255)
 ggCTTTTTATTGAATGATTATTGCATGTGTGTCGg                                   >  1:15502185‑M2/1‑34 (MQ=255)
 ggCTTTTTATTGAATGATTATTGCATGTGTGTCGg                                   <  1:11942084‑M2/35‑2 (MQ=255)
 ggCTTTTTACTGAATGATTATTGCATGTGTGTCGg                                   <  1:1265646‑M2/35‑2 (MQ=255)
  gCTTTTTATTGAATGATTATTGCATGTGTGTCGgg                                  <  1:1034588‑M2/35‑3 (MQ=255)
   cTTTTTATTGAATGATTATTGCATGTGTGTCGGtt                                 <  1:1276116/35‑1 (MQ=255)
    tttttATTGAATGATTATTGCATGTGTGTCGgggt                                <  1:10019203‑M2/35‑5 (MQ=255)
    tttttATTGAATGATTATTGCATGTGTGTCGGttt                                <  1:9058940/35‑1 (MQ=255)
     ttttATTGAATGATTATTGCATGTGTGTCGgggtt                               <  1:2599450‑M2/35‑6 (MQ=255)
     ttttATTGAATGATTATTGCATGTGTGTCGGtttt                               <  1:9515693/35‑1 (MQ=255)
      tttATTGAATGATTATTGCATGTGTGTCGGttttt                              <  1:5303055/35‑1 (MQ=255)
      tttATTGAATGATTATTGCATGTGTGTCGGttttt                              <  1:10133912/35‑1 (MQ=255)
        tATTGAATGATTATTGCATGTGTGTCGgggttttt                            <  1:15281719‑M2/35‑9 (MQ=255)
        tATTGAATGATTATTGCATGTGTGTCGGTTTttgt                            <  1:14156619/35‑1 (MQ=255)
        tATTGAATGATTATTGCATGTGTGTCGGTTTttgt                            <  1:20079201/35‑1 (MQ=255)
         aTTGAATGATTATTGCATGTGTGTCTGGttttttt                            >  1:3958197/1‑33 (MQ=25)
         aTTGAATGATTATTGCATGTGTGTCGgggtttttt                           <  1:4931110‑M2/35‑10 (MQ=255)
         aTTGAATGATTATTGCATGTGTGTCGgggtttttt                           <  1:3098488‑M2/35‑10 (MQ=255)
         aTTGAATGATTATTGCATGTGTGTCGgggtttttt                           <  1:17039061‑M2/35‑10 (MQ=255)
         aTTGAATGATTATTGCATGTGTGTCGGTTTttgtt                           <  1:355250/35‑1 (MQ=255)
         aTTGAATGATTATTGCATGTGTGTCGGTTTttgtt                           <  1:15695593/35‑1 (MQ=255)
         aTTGAATGATTATTGCATGTGTGTCGGTTTttgtt                           <  1:8437014/35‑1 (MQ=255)
          ttGAATGATTATTGCATGTGTGTCTGGTTttgttt                          >  1:568064/1‑34 (MQ=37)
          ttGAATGATTATTGCATGTGTGTCGggtttttttg                          <  1:6887899‑M2/35‑11 (MQ=255)
          ttGAATGATTATTGCATGTGTGTCGGTTTttgttg                          <  1:4594910/35‑1 (MQ=255)
           tGAATGATTATTGCATGTGTGTCGgggtttttttg                         <  1:10564395‑M2/35‑12 (MQ=255)
           tGAATGATTATTGCATGTGTGTCGgggtttttttg                         <  1:16934027‑M2/35‑12 (MQ=255)
            gAATGATTATTGCATGTGTGTCGgggtttttttgt                        <  1:852554‑M2/35‑13 (MQ=255)
            gAATGATTATTGCATGTGTGTCGGTTTTTGTTGCt                        <  1:6115243/35‑1 (MQ=255)
             aaTGATTATTGCATGTGTGTCGgggtttttttttt                       <  1:5507627‑M2/35‑14 (MQ=255)
             aaTGATTATTGCATGTGTGTCGgggtttttttttt                       <  1:12332169‑M2/35‑14 (MQ=255)
             aaTGATTATTGCATGTGTGTCGGTTTTTGTTGCtt                       <  1:4500547/35‑1 (MQ=255)
             aaTGATTATTGCATGTGTGTCGGTTTTTGTTGCtt                       <  1:3555953/35‑1 (MQ=255)
             aaTGATTATTGCATGTGTGTCGGTTTTTGTTGCtt                       <  1:8973710/35‑1 (MQ=255)
             aaTGATTATTGCATGTGTGTCGGTTTTTGTTGCtt                       <  1:18214172/35‑1 (MQ=255)
             aaTGATTATTGCATGTGTGTCGGTTTTTGTTGCtt                       <  1:20600369/35‑1 (MQ=255)
             aaTGATTATTGCATGTGTGTCGGTTTTTGTTGCtt                       <  1:18712648/35‑1 (MQ=255)
             aaTGATTATTGCATGTGTGTCGGTTTTGGTTGCtt                       <  1:4034345/35‑1 (MQ=255)
             aaTGATTATTGCATGTGTGTCGGGGTTTTTTGTtt                       >  1:12127797/1‑35 (MQ=16)
              aTGATTATTGCATGTGTGTCGGTTTTTGTTGCTTa                      <  1:12053231/35‑1 (MQ=255)
              aTGATTATTGCATGTGTGTCGGTTTTTGTTGCTTa                      <  1:7973816/35‑1 (MQ=255)
              aTGATTATTGCATGTGTGTCGGTTTTTGTTGCTTa                      <  1:7878170/35‑1 (MQ=255)
               tGATTATTGCATGTGTGTCGgggtttttttttttt                     <  1:17303108‑M2/35‑16 (MQ=255)
               tGATTATTGCATGTGTGTCGgggtttttttgttta                     <  1:1792088‑M2/35‑16 (MQ=255)
               tGATTATTGCATGTGTGTCGGTTTTTGTTGCTTaa                     <  1:9058704/35‑1 (MQ=255)
               tGATTATTGCATGTGTGTCGGTTTTTGTTGCTTaa                     <  1:20246956/35‑1 (MQ=255)
               tGATTATTGCATGTGTGTCGGTTTTTGTTGCTTaa                     <  1:11438949/35‑1 (MQ=255)
                gATTATTGCATGTGTGTCGgggtttttttttttat                    <  1:6271351‑M2/35‑17 (MQ=255)
                gATTATTGCATGTGTGTCGGTTTTTGTTGCTTAAt                    <  1:7035692/35‑1 (MQ=255)
                cattattgCATGTGTGTCGgggtttttttttttat                    <  1:7938921‑M2/34‑17 (MQ=255)
                 attattGCATGTGTGTCGGTTTTTGTTGCTTAATc                   <  1:9884655/35‑1 (MQ=255)
                 attattGCATGTGTGTCGGTTTTTGTTGCTTAATc                   <  1:16750612/35‑1 (MQ=255)
                 attattGCATGTGTGTCGGTTTTTGTTGCTTAATc                   <  1:18440271/35‑1 (MQ=255)
                  ttattGCATGTGTGTCGGTTTTTGTTGCTTAATCa                  <  1:11743103/35‑1 (MQ=255)
                  ttattGCATGTGTGTCGGTTTTTGTTGCTTAATCa                  <  1:14058527/35‑1 (MQ=255)
                  ttattGCATGTGTGTCGGTTTTTGTTGCTTAATCa                  <  1:2202679/35‑1 (MQ=255)
                  ttattGCATGTGTGTCGGTTTTTGTTGCTTAATCa                  <  1:480745/35‑1 (MQ=255)
                  ttattGCATGTGTGTCGGTTTTTGTTGCTTAATCa                  <  1:6373379/35‑1 (MQ=255)
                   tattGCATGTGTGTCGGTTTTTGTTGCTTAATCAt                 <  1:12282465/35‑1 (MQ=255)
                   tattGCATGTGTGTCGGTTTTTGTTGCTTAATCAt                 <  1:18307127/35‑1 (MQ=255)
                   tattGCATGTGTGTCGGTTTTTGTTGCTTAATCAt                 <  1:7353917/35‑1 (MQ=255)
                    attGCATGTGTGTCGTTTTTTGTTGCTTAATCATa                >  1:20400060/1‑35 (MQ=255)
                    attGCATGTGTGTCGGTTTTTGTTGCTTAATCATa                <  1:9290749/35‑1 (MQ=255)
                    attGCATGTGTGTCGGTTTTTGTTGCTTAATCATa                <  1:2422476/35‑1 (MQ=255)
                    attGCATGTGTGTCGGTTTTTGTTGCTTAATCATa                <  1:15050317/35‑1 (MQ=255)
                    attGCATGTGTGACGGTTTTTGTTGCTTAATCATa                <  1:2424160/35‑1 (MQ=255)
                     ttGCATGTGTGTCGGTTTTTGTTGCTTAATCATaa               <  1:7404021/35‑1 (MQ=255)
                     ttGCATGTGTGTCGGTTTTTGTTGCTTAATCATaa               <  1:6358225/35‑1 (MQ=255)
                     ttGCATGTGTGTCGGTTTTTGTTGCTTAATCATaa               <  1:13699836/35‑1 (MQ=255)
                        cATGTGTGTCGGTTTTTGTTGCTTAATCATAAGCa            <  1:8260541/35‑1 (MQ=255)
                         aTGTGTGTCGGTTTTTGTTGCTTAATCATAAGCaa           <  1:835110/35‑1 (MQ=255)
                         aTGTGTGTCGGTTTTTGTTGCTTAATCATAAGCaa           <  1:14836053/35‑1 (MQ=255)
                          tgtgtgTCGGTTTTTGTTGCTTAATCATAAGCAAc          <  1:1653524/35‑1 (MQ=255)
                           gtgtgtCGGTTTTTGTTGCTTAATCATAAGCAACa         <  1:14636973/35‑1 (MQ=255)
                           gtgtgtCGGTTTTTGTTGCTTAATCATAAGCAACa         <  1:6061999/35‑1 (MQ=255)
                           gtgtgtCGGTTTTTGTTGCTTAATCATAAGCAACa         <  1:15596157/35‑1 (MQ=255)
                             gtgtCGGTTTTTGTTGCTTAATCATAAGCAACAgg       <  1:16742415/35‑1 (MQ=255)
                             gtgtCGGTTTTTGTTGCTTAATCATAAGCAACAgg       <  1:10040149/35‑1 (MQ=255)
                              tgtCGGTTTTTGTTGCTTAATCATAAGCAACAGGa      <  1:16316381/35‑1 (MQ=255)
                              tgtCGGTTTTTGTTGCTTAATCATAAGCAACAGGa      <  1:19992676/35‑1 (MQ=255)
                               gtCGGTTTTTGTTGCTTAATCATAAGCAACAGGAc     <  1:13963957/35‑1 (MQ=255)
                                 cGGTTTTTGTTGCTTAATCATAAGCAACAGGACGc   <  1:10798596/35‑1 (MQ=255)
                                 cGGTTTTTGTTGCTTAATCATAAGCAACAGGACGc   >  1:31979/1‑35 (MQ=255)
                                 cGGTTTTTGTTGCTTAATCATAAGCAACAGGACGc   <  1:8938810/35‑1 (MQ=255)
                                 cGGTTTTTGTTGCTTAATCATAAGCAACAGGACGc   <  1:15627468/35‑1 (MQ=255)
                                 cGGTTTTTGTTGCTTAATCATAAGCAACAGGACGc   >  1:116878/1‑35 (MQ=255)
                                 cGGTTTTTGTTGCTTAATCATAAGCAACAGGACGc   <  1:17086273/35‑1 (MQ=255)
                                 cGGTTTTTGTTGCTTAATCATAAGAAACCGGACGc   >  1:474203/1‑35 (MQ=38)
                                   ggTTTTTGTTGCTTAATCATAAGCAACAGGACGCa  >  1:13667622/1‑35 (MQ=255)
                                   ggTTTTTGTTGCTTAATCATAAGCAACAGGACGCa  <  1:8431047/35‑1 (MQ=255)
                                   ggTTTTTGTTGCTTAATCATAAGCAACAGGACGCa  <  1:1740762/35‑1 (MQ=255)
                                   |                                  
AGGCTTTTTATTGAATGATTATTGCATGTGTGTCGGTTTTTGTTGCTTAATCATAAGCAACAGGACGCA  >  REL606/3887435‑3887503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.