New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1510513 =81 (0.790)16 (0.210) 4/36 NT 22.7% coding (256/681 nt) narV nitrate reductase 2 (NRZ), gamma subunit
?REL606 4138913 = 48 (0.620)coding (563/918 nt) oxyR DNA‑binding transcriptional dual regulator

Only 100 of 161 total aligned reads displayed.

ATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTG  >  REL606/1510479‑1510546
                                  |                                 
cagtgaccatcttccagcatcagcagtttttcccc                                   >  1:18648749‑M1/35‑35 (MQ=255)
cagtgaccatcttccagcatcagcagtttttcccc                                   <  1:12228879‑M1/1‑1 (MQ=255)
aTACCGCCGAGCACCATCGCCATGAGTTGTTTCGc                                   >  1:15925639/1‑35 (MQ=255)
aTACCGCCGAGCACCATCGCCATGAGTTGTTTCGc                                   >  1:20331127/1‑35 (MQ=255)
aTACCGCCGAGCACCATCGCCATGAGTTGTTTCGc                                   >  1:8410426/1‑35 (MQ=255)
 tACCGCCGAGCACCATCGCCATGAGTTGTTTCGCt                                  >  1:2288531/1‑35 (MQ=255)
 tACCGCCGAGCACCATCGCCATGAGTTGTTTCGCt                                  >  1:11630416/1‑35 (MQ=255)
 ccccgcggAGCCCTTTCGCCATGAGTTGTTTCGCt                                  <  1:13677817/33‑1 (MQ=16)
 ccccgccgAGCACCATCGCGATGAGTTGTTTCGCt                                  <  1:203580/33‑1 (MQ=38)
 agtgaccatcttccagcatcagcagtttttcccCt                                  >  1:4030228‑M1/34‑35 (MQ=255)
 agtgaccatcttccagcatcagcagtttttcccCt                                  >  1:5554757‑M1/34‑35 (MQ=255)
 agtgaccatcttccagcatcagcagtttttcccCt                                  >  1:5665835‑M1/34‑35 (MQ=255)
 agtgaccatcttccagcatcagcagtttttcccCt                                  >  1:10045599‑M1/34‑35 (MQ=255)
 agtgaccatcttccagcatcagcaggttttcccCt                                  <  1:19831934‑M1/2‑1 (MQ=255)
 agtcaccatcttccagcatcagcagtttttcccCt                                  <  1:13699389‑M1/2‑1 (MQ=255)
  gtgaccatcttccagcatcagcagtttttcccCTg                                 >  1:8678283‑M1/33‑35 (MQ=255)
  gtgaccatcttccagcatcagcagtttttcccCTg                                 >  1:11399177‑M1/33‑35 (MQ=255)
  cccgccgAGCCCCATCGCCATGAGTTGTTTCGCTg                                 <  1:14522675/34‑1 (MQ=255)
  aCCGCCGAGCACTATCGCCATGAGTTGTTTCGCTg                                 >  1:11081029/1‑35 (MQ=255)
  aCCGCCGAGCACCATCGCCATGAGTTGTTTCGCTg                                 >  1:12909110/1‑35 (MQ=255)
   tgaccatcttccagcatcagcagtttttcccCTGc                                <  1:12415044‑M1/4‑1 (MQ=255)
   ccgccgAGCACCATCGCCATGAGTTGTTTCGCTGc                                >  1:7637474/1‑35 (MQ=255)
   cccccgAGCCCCATCGCCATGAGTTGTTTCGCTGc                                <  1:2941280/32‑1 (MQ=38)
    gaccatcttccagcatcagcagtttttcccCTGcc                               <  1:15615304‑M1/5‑1 (MQ=255)
    gaccatcttccagcatcagcagtttttcccCTGcc                               <  1:6353235‑M1/5‑1 (MQ=255)
    gaccatcttccagcatcagcagtttttccaCTGcc                               >  1:14774237‑M1/31‑35 (MQ=255)
    cgccgACCCCCATCGCCATGAGTTGTTTCGCTGcc                               <  1:11540636/35‑1 (MQ=38)
     gccgAGCACCATCGCCATGAGTTGTTTCGCTGCCa                              >  1:11888880/1‑35 (MQ=255)
     gccgACCCCCTTCGCCATGAGTTGTTTCGCTGCCa                              <  1:896255/35‑1 (MQ=25)
     gccgACCACCTTCGCCATGAGTTGTTTCGCTGCCa                              <  1:15717577/35‑1 (MQ=38)
      ncgAGCACCATCGCCATGAGTTGTTTCGCTGCCAc                             >  1:9840074/2‑35 (MQ=255)
      ccgAGCACCATCGCCATGAGTTGTTTCGCTGCCAc                             >  1:18602638/1‑35 (MQ=255)
       cgAGCACCATCGCCATGAGTTGTTTCGCTGCCACt                            >  1:7611604/1‑35 (MQ=255)
       cgAGCACCATCGCCATGAGTTGTTTCGCTGCCACt                            >  1:17972099/1‑35 (MQ=255)
          gCACCATCGCCATGAGTTGTTTCGCTGCCACTGGc                         >  1:815162/1‑35 (MQ=255)
            aCCGTCGCCATGAGTTGTTTCGCTGCCACTGGCaa                       >  1:5362919/1‑35 (MQ=255)
            aCCATCGCCATGAGTTGTTTCGCTGCCACTGGCag                       >  1:7836127/1‑34 (MQ=255)
            aCCATCGCCATGAGTTGTTTCGCTGCCACTGGCaa                       >  1:886694/1‑35 (MQ=255)
             ccATCGCCATGAGTTGTTTCGCTGCCACTGGCaaa                      >  1:13470152/1‑35 (MQ=255)
             ccATCGCCATGAGTTGTTTCGCTGCCACTGGCaaa                      >  1:7445339/1‑35 (MQ=255)
              cATCGCCATGAGTTGTTTCGCTGCCACTGGCaaaa                     >  1:7308193/1‑35 (MQ=255)
              cATCGCCATGAGTTGTTTCGCTGCCACTGGCaaaa                     >  1:663784/1‑35 (MQ=255)
              cATCGCCATGAGTTGTTTCGCTGCCACTGGCaaaa                     >  1:10870085/1‑35 (MQ=255)
               aTCGCCATGAGTTGTTTCGCTGCCACTGGCaaaaa                    >  1:7327491/1‑35 (MQ=255)
                tCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAAc                   >  1:14779169/1‑35 (MQ=255)
                 cGCCATGAGTTGTTTCGCTGCCACTGGCAAAAAcc                  >  1:5165157/1‑35 (MQ=255)
                 cGCCATGAGTTGTTTCGCTGCCACTGGCAAAAAcc                  >  1:4333126/1‑35 (MQ=255)
                 cGCCATGAGTTGTTTCGCTGCCACTGGCAAAAAcc                  >  1:17239590/1‑35 (MQ=255)
                  gCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCa                 >  1:5314517/1‑35 (MQ=255)
                  gCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCa                 >  1:15940356/1‑35 (MQ=255)
                  gCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCa                 >  1:17454651/1‑35 (MQ=255)
                  gCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCa                 >  1:7061149/1‑35 (MQ=255)
                   ccATGATTTTTTCCCCTGCCACTGGCAAAAACCAc                <  1:16660883/35‑1 (MQ=16)
                   ccATGAGTTGTTTCGCTGCCACTGGCAAAAACCAc                >  1:5929786/1‑35 (MQ=255)
                    cATGAGTTGTTTCGCTGCCACTGGCAAAAACCAcg               >  1:7730972/1‑35 (MQ=255)
                    cATGAGTTGTTTCGCTGCCACTGGCAAAAACCAcg               >  1:7545144/1‑35 (MQ=255)
                    aaTGTGTTTTTCCCCTGCCACTGGCAAAAACCAcg               <  1:11633774/34‑1 (MQ=16)
                     aTGAGTTGTTTCGCTGCCACTGGCAAAAACCAcgc              >  1:1724643/1‑35 (MQ=255)
                     aTGAGTTGTTTCGCTGCCACTGGCAAAAACCAcgc              >  1:2635265/1‑35 (MQ=255)
                     aTGAGTTGTTTCGCTGACACTGGCAAAAACCAcgc              <  1:2981770/35‑1 (MQ=255)
                       gAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGt            >  1:7471957/1‑35 (MQ=255)
                       gAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGt            >  1:842565/1‑35 (MQ=255)
                        gttttttcccCTGCCACTGGCAAAAACCACGCGTa           >  1:16273286‑M1/11‑35 (MQ=255)
                        attttttcccCTGCCACTGGCAAAAACCACGCGTa           >  1:19363183‑M1/11‑35 (MQ=255)
                        aGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTa           >  1:19387886/1‑35 (MQ=255)
                        aGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTa           >  1:11475573/1‑35 (MQ=255)
                        aGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTa           >  1:15596782/1‑35 (MQ=255)
                         ttttttcccCTGCCACTGGCAAAAACCACGCGTAc          >  1:18051292‑M1/10‑35 (MQ=255)
                         tttgttcccCTGCCACTGGCAAAAACCACGCGTAc          >  1:9065543‑M1/10‑35 (MQ=255)
                         gtttttcccCTGCCACTGGCAAAAACCACGCGTAc          >  1:3218785‑M1/10‑35 (MQ=255)
                         gttgttTCGCTGCCACTGGCAAAAACCACGCGTAc          >  1:20070818/1‑35 (MQ=255)
                         gttgttTCGCTGCCACTGGCAAAAACCACGCGTAc          >  1:19549013/1‑35 (MQ=255)
                         gttgttTCGCTGCCACTGGCAAAAACCACGCGTAc          >  1:6978175/1‑35 (MQ=255)
                         gttgttTCGCTGCCACTGGCAAAAACCACGCGTAc          >  1:15499303/1‑35 (MQ=255)
                         gttgttTCGCTGCCACTGGCAAAAACCACGCGTAc          >  1:12942948/1‑35 (MQ=255)
                          tttttcccCTGCCACTGGCAAAAACCACGCGTACa         >  1:15300945‑M1/9‑35 (MQ=255)
                          tttttcccCTGCCACTGGCAAAAACCACGCGTACa         >  1:4055017‑M1/9‑35 (MQ=255)
                          ttgttcccCTGCCACTGGCAAAAACCACGCGTACa         >  1:6488679‑M1/9‑35 (MQ=255)
                          ttgttTCGCTGCCACTGGCAAAAACCACGCGTACa         >  1:3059847/1‑35 (MQ=255)
                           ttttcccCTGCCACTGGCAAAAACCACGCGTACAt        >  1:5168016‑M1/8‑35 (MQ=255)
                           tttccccCTGCCACTGGCAAAAACCACGCGTACAt        >  1:15076180‑M1/8‑35 (MQ=255)
                           tgttcccCTGCCACTGGCAAAAACCACGCGTACAt        >  1:4848659‑M1/8‑35 (MQ=255)
                            gttTCGCTGCTACTGGCAAAAACCACGCGTACATc       >  1:15785061/1‑35 (MQ=255)
                            gttTCGCTGCCACTGGCAAAAACCACGCGTACATc       >  1:12004306/1‑35 (MQ=255)
                             tttccCTGCCACTGGCAAAAACCACGCGTACATcc      >  1:155723‑M1/6‑35 (MQ=255)
                             ttcccCTGCCACTGGCAAAAACCACGCGTACATcc      >  1:17728732‑M1/6‑35 (MQ=255)
                              ttCGCTGCCACTGGCAAAAACCACGCGTACATCCa     >  1:17756804/1‑35 (MQ=255)
                              ttCGCTGCCACTGGCAAAAACCACGCGTACATCCa     >  1:2149965/1‑35 (MQ=255)
                              ttCGCTGCCACTGGCAAAAACCACGCGTACATCCa     >  1:16236812/1‑35 (MQ=255)
                              ttCGCTGCCACTGGCAAAAACCACGCGTACATCCa     >  1:3058793/1‑35 (MQ=255)
                              tcccCTGCCACTGGCAAAAACCACGCGTACATCCa     >  1:13793872‑M1/5‑35 (MQ=255)
                              tcccCTGCCACTGGCAAAAACCACGCGTACATCCa     >  1:9157695‑M1/5‑35 (MQ=255)
                              ccccCTGCCACTGGCAAAAACCACGCGTACATCCa     >  1:18372490‑M1/5‑35 (MQ=255)
                               tCGCTGCCACTGGCAAAAACCACGCGTACATCCAg    >  1:12277029/1‑35 (MQ=255)
                               cccCTGCCACTGGCAAAAACCACGCGTACATCCAg    >  1:14286753‑M1/4‑35 (MQ=255)
                               cccCTGCCACTGGCAAAAACCACGCGTACATCCAg    >  1:14217289‑M1/4‑35 (MQ=255)
                               cccCTGCCACTGGCAAAAACCACGCGTACATCCAg    >  1:6992413‑M1/4‑35 (MQ=255)
                                cGCTGCCACTGGCAAAAACCACGCGTACATCCAGt   >  1:10361461/1‑35 (MQ=255)
                                 gCTGCCACTGGCAAAAACCACGCGTACATCCAGtt  >  1:2446263/1‑34 (MQ=255)
                                 gCTGCCACTGGCAAAAACCACGCGTACATCCAGTg  >  1:4376535/1‑35 (MQ=255)
                                  |                                 
ATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTG  >  REL606/1510479‑1510546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.