New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2966320 | 71 (0.690) | 9 (0.120) | 3/36 | NT | 10.0% | coding (1067/1992 nt) | tktA | transketolase 1, thiamin‑binding |
? | REL606 | 3882316 = | 109 (1.410) | coding (102/816 nt) | atpB | F0F1 ATP synthase subunit A |
Only 100 of 423 total aligned reads displayed.
TGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTACGCA > REL606/3882282‑3882350 | tcaagtacatcgtaacggaaggtggtGTGGCTggg > 1:18230103‑M2/27‑35 (MQ=255) tactggccggtgctgctgggcgcggggtggctggg > 1:10257085‑M2/34‑35 (MQ=255) gcttcgatagcattctgagacgctttacggctggg > 1:892599‑M2/35‑35 (MQ=255) gcttcgatagcattctgagacgctttacggctggg > 1:17732445‑M2/35‑35 (MQ=255) ctttctatgctgccgaacgccccagcatggctggg > 1:19209049‑M2/34‑35 (MQ=255) cgcactcagctcaaaagcctcggtttgtggttggg > 1:8377829‑M2/34‑35 (MQ=255) aatgcgcgtttgcgcgcgatgaatcttcggctggg > 1:19076644‑M2/34‑35 (MQ=255) aatgcgcgtttgcgcgcgatgaatcttcggatggg > 1:15140634‑M2/34‑35 (MQ=255) tttctatgctgccgaacgccccagcatggctgggg > 1:3615120‑M2/33‑35 (MQ=255) tcatcggtatgatcggctttggcctgtggctgggg > 1:594318‑M2/33‑35 (MQ=255) ggAGTCAATATTGATTGTCCAGAAGGTGGCTgggg > 1:14582167/1‑35 (MQ=255) aaggcagtttgaagttgcacgccaaatggctgggg > 1:7053938‑M2/33‑35 (MQ=255) ttcgatagcattctgagacgctttacggctggggg > 1:18972715‑M2/33‑35 (MQ=255) tgcgcgtttgcgcgcgatgaatcttcggctggggg > 1:6707010‑M2/32‑35 (MQ=255) aggcagtttgaagttgcacgccaaatggctggggg > 1:1597008‑M2/32‑35 (MQ=255) tggccggtgctgctgggcgcggagtggctgggggg > 1:14259775‑M2/31‑35 (MQ=255) tcgatagcattctgagacgctttacggctgggggg > 1:521170‑M2/32‑35 (MQ=255) gcgcgtttgcgcgcgatgaatcttcggctgggggg > 1:3342057‑M2/31‑35 (MQ=255) aGTCAATATTGATTGTCCAGAAGGTGGCTgggggg < 1:11142192/35‑1 (MQ=255) gcagtttgaagttgcacgccaaatggctggggggg > 1:9435547‑M2/30‑34 (MQ=255) ctatgctgccgaacgccccagcatggctgGGGGGt > 1:1728966‑M2/30‑35 (MQ=255) cgcggcgtttctccggtatcggtggggggggggtg > 1:1680822‑M2/29‑33 (MQ=255) cgcggcgtttctccggtatcggtgggggggggggg > 1:15295098‑M2/29‑34 (MQ=255) cgcggcgtttctccggtatcggtgggggGGGGGGt > 1:16468133‑M2/29‑35 (MQ=255) cgatagcattctgagacgctttacggctggggggg > 1:12739939‑M2/31‑34 (MQ=255) cgatagcattctgagacgctttacggctggGGGGt > 1:1328991‑M2/31‑35 (MQ=255) ttatttagcctggccctgatgctggctgggggggg > 1:6914071‑M2/29‑33 (MQ=255) ttatttagcctggccctgatgctggctgggggggg > 1:10562893‑M2/29‑33 (MQ=255) tatgctgccgaacgccccagcatggctgGGGGTtt > 1:18111616‑M2/29‑35 (MQ=255) gcgtttgcgcgtgatgaatcttcggctgGGGGGtt > 1:19934631‑M2/29‑35 (MQ=255) gcgtttgcgcgcgatgaatcttcggctgGGGGGtt > 1:14969844‑M2/29‑35 (MQ=255) gcggcgtttctccggtatcggtgggggGGTGGGtt > 1:1966828‑M2/28‑35 (MQ=255) gcggcgtttctccggtatcggtgggggGGGGGGtt > 1:18890271‑M2/28‑35 (MQ=255) gccggtgctgctgggcgcggagtggctgGGGGTtt > 1:11936483‑M2/29‑35 (MQ=255) ctcctgcatggactccggtaactggctgGGGGGtt > 1:3061332‑M2/29‑35 (MQ=255) cggtatgatcggctttggcctgtggctgGGGGGtt > 1:9099797‑M2/29‑35 (MQ=255) tatttagcctggccctgatgctggctggggggggg > 1:7651163‑M2/28‑32 (MQ=255) tatttagcctggccctgatgctggctggggggggg > 1:1002430‑M2/28‑32 (MQ=255) tatttagcctggccctgatgctggctgGGGGGgtt > 1:1127276‑M2/28‑35 (MQ=255) cagctcaaaagcctcggtttgtggttgGGGGGttt > 1:17624010‑M2/28‑35 (MQ=255) cAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt > 1:16192227/1‑35 (MQ=255) atgctgccgaacgccccagcatggctgGGGGGgtt > 1:18690715‑M2/28‑35 (MQ=255) atagcattctgagacgctttacggctggGGGTttt > 1:2317498‑M2/29‑35 (MQ=255) tagcattctgagacgctttacggctggGGGGtttt > 1:6624441‑M2/28‑35 (MQ=255) gtttgcgcgcgatgaatcttcggctgGGGGGgttt > 1:14820217‑M2/27‑35 (MQ=255) gtttgaagttgcacgccaaatggctgGGGGGgttt > 1:9556537‑M2/27‑35 (MQ=255) gtatgatcggctttggcctgtggctgGGGGGtttt > 1:10356438‑M2/27‑35 (MQ=255) ggcgtttctccggtatcggtgggggGGGGGGgttt > 1:5101918‑M2/26‑35 (MQ=255) atttagcctggccctgatgctggctgGGGGGtgtt > 1:5047186‑M2/27‑35 (MQ=255) atttagcctggccctgatgctggctgGGGCgtttg > 1:6262844‑M2/27‑34 (MQ=255) aaTATTGATTGTCCAGAAGGTGGCTGGGGGGtttt < 1:20365660/35‑1 (MQ=255) aaTATTGATTGTCCAGAAGGTGGCTGGGGGGtttt < 1:10881032/35‑1 (MQ=255) ggtgctgctgggcgcggagtggctgGGGGggtttc > 1:5542116‑M2/26‑34 (MQ=255) gctcaaaagcctcggtttgtggttgGGGGggtttc > 1:7944613‑M2/26‑34 (MQ=255) gcgtttctccggtatcggtgggggGGGGGgttttc > 1:6402107‑M2/25‑34 (MQ=255) atcgtaacggaaggtggtGTGGCTGGGGGtttttc > 1:15450486‑M2/19‑34 (MQ=255) atcgtaacggaaggtggtGTGGCTGGGGGgttttt > 1:11621332‑M2/19‑34 (MQ=255) ttgcgcgcgatgaatcttcggctgGGGggtttttt > 1:15486358‑M2/25‑33 (MQ=255) ttgcgcgcgatgaatcttcggctgGGGggtttttt > 1:5852907‑M2/25‑33 (MQ=255) ttgcgcgcgatgaatcttcggctgGGGGGTTTtgt > 1:10147043‑M2/25‑35 (MQ=255) tatTGATTGTCCAGAAGGTGGCTGGGGGGTTTtgt < 1:19717765/35‑1 (MQ=255) cgtttctccggtatcggtgggggGGGGggtttttt > 1:8144090‑M2/24‑33 (MQ=255) tgcgcgcgatgaatcttcggctgGGGGGTTTtttg > 1:5779040‑M2/24‑35 (MQ=255) cattctgagacgctttacggctggGgggtttttcc > 1:4959003‑M2/25‑32 (MQ=255) attgattgTCCAGAAGGTGGCTGGGGGGTTTtgtg > 1:14734834/1‑35 (MQ=255) attgattgTCCAGAAGGTGGCTGGGGGGTTTtgtg < 1:8537398/35‑1 (MQ=255) ttgattgTCCAGAAGGTGGCTGGGGGGTTTTTTgg > 1:20136167/1‑35 (MQ=255) tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa < 1:928671/35‑1 (MQ=255) tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa > 1:4370567/1‑35 (MQ=255) tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa < 1:12882169/35‑1 (MQ=255) gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt > 1:2956472/1‑35 (MQ=255) attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc > 1:4695872/1‑35 (MQ=255) attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc < 1:283343/35‑1 (MQ=255) tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca < 1:19432875/35‑1 (MQ=255) tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca < 1:2606678/35‑1 (MQ=255) tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATcca < 1:3752761/35‑1 (MQ=255) gTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccac > 1:11520548/1‑35 (MQ=255) gTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccac < 1:8655697/35‑1 (MQ=255) tCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc > 1:15874337/1‑35 (MQ=255) tCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc < 1:3886814/35‑1 (MQ=255) tCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc > 1:15043086/1‑35 (MQ=255) ccAGAAGGTGGCTGGGGGGTTTTGTGGATccacca > 1:13871952/1‑35 (MQ=255) ccAGAAGGTGGCTGGGGGGTTTTGTGGATccacca > 1:15653859/1‑35 (MQ=255) cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg > 1:5420983/1‑35 (MQ=255) cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg < 1:18331882/35‑1 (MQ=255) cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg > 1:2211603/1‑35 (MQ=255) aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc > 1:2751387/1‑35 (MQ=255) gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg > 1:8268116/1‑35 (MQ=255) aaGGTGGCTTGGGGGTTTTGTGGATCCACCAGCgg > 1:1173011/1‑34 (MQ=255) aaGGTGGCTGGGGGGTTTTGTGGATCCGCCAGCga < 1:4088361/35‑1 (MQ=255) aGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgag < 1:17483092/35‑1 (MQ=255) aGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgag < 1:12355174/35‑1 (MQ=255) ggTGGCTGGGGGGTTTTTTGGATCCACCAGCgaga > 1:7146958/1‑35 (MQ=255) ggctgGGGGGTTTTGTGGATCCACCAGCGAGAATg < 1:7434918‑M2/30‑1 (MQ=255) ctgGGGGGTTTTGTGGATCCATCAGCGAGAATGTa > 1:13145248‑M2/4‑35 (MQ=255) ctgGGGGGTTTTGTGGATCCACCAGCGAGAATGTa < 1:10925614‑M2/32‑1 (MQ=255) ctgGGGGGTTTTGTGGATCCACCAGCGAGAATGTa < 1:18519260‑M2/32‑1 (MQ=255) tgGGGGGTTTTGTGGATCCACCAGCGAGAATGTAc < 1:9366146‑M2/33‑1 (MQ=255) gGGGGTTTTGTGGATCCACCAGCGAGAATGTACGc > 1:316925‑M2/2‑35 (MQ=255) ggggTTTTGTGGATCCACCAGCGAGAATGTACGCa < 1:17036719/35‑1 (MQ=255) | TGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTACGCA > REL606/3882282‑3882350 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |