New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 31308524 (0.230)4 (0.040) 3/48 NT 6.4% coding (272/951 nt) yahI predicted carbamate kinase‑like protein
?REL606 = 661462 93 (0.910)intergenic (+13/+47) ybeV/hscC Hsc56 co‑chaperone of HscC/Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription

Only 100 of 146 total aligned reads displayed.

AATCGCGATGTTGTTTAGTTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCATTTACGCCGCATC  >  REL606/661428‑661496
                                  |                                  
aaTCGCGATGTTGTTTAGTTGACGATGTGtttttt                                    <  1:14046784/35‑1 (MQ=255)
aaTCGCGATGTTGTTTAGTTGACGATGTGtttttt                                    <  1:15690913/35‑1 (MQ=255)
aaTCGCGATGTTGTTTAGTTGACGATGTGtttttt                                    >  1:13179333/1‑35 (MQ=255)
aaTCGCGATGTTGTTTAGTTGACGATGTGtttttt                                    >  1:16850945/1‑35 (MQ=255)
aaTCGCGATGTTGTTTAGTTGACGATGTGtttttt                                    <  1:18999863/35‑1 (MQ=255)
aaTCGCGATGTTGTTTAGTTGACGATGTGtttttt                                    <  1:10024898/35‑1 (MQ=255)
aaTCGCGATGTTGTTTAGTTGACGATGTGtttttt                                    <  1:3545620/35‑1 (MQ=255)
 aTCGCGATGTTGTTTAGTTGACGATGTGTTTTTTg                                   >  1:9107796/1‑35 (MQ=255)
  tCGCGATGTTGTTTAGTTGACGATGTGTTTTTTgc                                  <  1:9496547/35‑1 (MQ=255)
  tCGCGATGTTGTTTAGTTGACGATGTGTTTTTTgc                                  >  1:14651649/1‑35 (MQ=255)
  tCGCGATGTTGTTTAGTTGACGATGCGGTTTTAgc                                  >  1:20280360/1‑35 (MQ=25)
   cgcgATGTTGTTTAGTTGACGATGTGTTTTTTgcg                                 <  1:17405489/35‑1 (MQ=255)
   cgcgATGTTGTTTAGTTGACGATGTGTTTTTTgcg                                 >  1:20312368/1‑35 (MQ=255)
   cgcgATGTTGTTTAGTTGACGATGTGTTTTTTgcg                                 >  1:15443479/1‑35 (MQ=255)
   cgcgATGTTGTTTAGTTGACGATGCGTTTTTTgcg                                 >  1:18187661/1‑35 (MQ=255)
    gcgATGTTGTTTAGTTGACGATGTGTTTTTTgcgc                                >  1:18597769/1‑35 (MQ=255)
    gcgATGTTGTTTAGTTGACGATGTGTTTTTTgcgc                                <  1:2779851/35‑1 (MQ=255)
    gcgATGTTGTTTAGTTGACGATGTGTTTTTTgcgc                                >  1:15560427/1‑35 (MQ=255)
      gATGTTGTTTAGTTGACGATGTGTTTTTTGCGCCg                              <  1:16889254/35‑1 (MQ=255)
       aTGTTGTTTAGTTGACGATGTGTTTTTTGCGCCGa                             >  1:4600970/1‑35 (MQ=255)
       aTGTTGTTTAGTTGACGATGTGTTTTTTGCGCCGa                             >  1:8139511/1‑35 (MQ=255)
       aTGTTGTTTAGTTGACGATGTGTTTTTTGCGCCGa                             <  1:3275405/35‑1 (MQ=255)
       aTGTTGTTTAGTTGACGATGTGTTTTTTGCGCCGa                             >  1:1213077/1‑35 (MQ=255)
       aTGTTGTTTAGTTGACGATGTGTTTTTTGCGCCGa                             >  1:13369249/1‑35 (MQ=255)
        tgttgtTTAGTTGACGATGTGTTTTTTGCGCCGAt                            <  1:11249916/35‑1 (MQ=255)
        tgttgtTTAGTTGACGATGTGTTTTTTGCGCCGAt                            >  1:17102291/1‑35 (MQ=255)
        tgttgtTTAGTTGACGATGTGTTTTTTGCGCCGAt                            <  1:12589116/35‑1 (MQ=255)
        tggtgttTAGTTGACGATGTGTTTTTTGCGCCGAt                            <  1:20471778/32‑1 (MQ=255)
           tgttTAGTTGACGATGTGTTTTTTGCGCCGATGcc                         <  1:14649506/35‑1 (MQ=255)
           tgttTAGTTGACGATGGGTTTTTTGCGCCGATGcc                         >  1:2242315/1‑35 (MQ=255)
            gttTAGTTGACGATGTGTTTTTTGCGCCGATGCCg                        <  1:10331917/35‑1 (MQ=255)
            gttTAGTTGACGATGTGTTTTTTGCGCCGATGCCg                        <  1:18304574/35‑1 (MQ=255)
             tttAGTTGACGATGTGTTTTTTGCGCCGATGCCgg                       <  1:10668713/35‑1 (MQ=255)
             tttAGTTGACGATGTGTTTTTTGCGCCGATGCCgg                       >  1:3366176/1‑35 (MQ=255)
             tttAGTTGACGATGTGTTTTTTGCGCCGATGCCgg                       <  1:16808690/35‑1 (MQ=255)
             tttAGTTGACGATGTGTTTTTTGCGCCGATGCCgg                       <  1:16324379/35‑1 (MQ=255)
              ttAGTTGACGATGTGTTTTTTGCGCCGATGCCGGa                      <  1:7058677/35‑1 (MQ=255)
              ttAGTTGACGATGTGTTTTTTGCGCCGATGCCGGa                      >  1:14770651/1‑35 (MQ=255)
              ttAGTTGACGATGTGTTTTTTGCGCCGATGCCGGa                      <  1:15173921/35‑1 (MQ=255)
               tAGTTGNCGATGTGTTTTTTGCGCCGATGGCgggt                     >  1:13687402/1‑33 (MQ=37)
               tAGTTGACGATGTGTTTTTTGCGCCGATGCCGGAt                     <  1:19146703/35‑1 (MQ=255)
               tAGTTGACGATGTGTTTTTTGCGCCGATGCCGGAt                     <  1:11977320/35‑1 (MQ=255)
               tAGTTGACGATGTGTTTTTTGCGCCGATGCCGGAt                     <  1:5864334/35‑1 (MQ=255)
                aGTTGACTATGTGTTTTTTGCGCCGATGCCGGATg                    >  1:18950917/1‑35 (MQ=255)
                aGTTGACGATGTGTTTTTTGCGCCGATGCCGGATg                    <  1:5259617/35‑1 (MQ=255)
                aGTTGACGATGTGTTTTTTGCGCCGATGCCCGacg                    >  1:14477435/1‑33 (MQ=37)
                 gTTGACGATGTGTTTTTTGCGCCGATGCCGGATgc                   <  1:15370078/35‑1 (MQ=255)
                  ttGACGATGTGTTTTTTGCGCCGATGCCGGGTgcg                  >  1:16271117/1‑34 (MQ=255)
                  ttGACGATGTGTTTTTTGCGCCGATGCCGGGTgca                  >  1:910903/1‑35 (MQ=255)
                  ttGACGATGTGTTTTTTGCGCCGATGCAGGATgca                  <  1:11299971/35‑1 (MQ=255)
                   tGACGATGTGTTTTTTGCGCCGATGCCGGATgcag                 <  1:13225318/35‑1 (MQ=255)
                   tGACGATGTGTTTTTTGCGCCGATGCCGGATgcag                 <  1:7836018/35‑1 (MQ=255)
                   tGACGATGTGTTTTTTGCGCCGATGCCCGGTgcca                 >  1:12610925/1‑33 (MQ=25)
                    gACGATGTGTTTTTTGCGCCGATGCCGGATgcagc                <  1:8352313/35‑1 (MQ=255)
                    gACGATGTGTTTTTTGCGCCGATGCCGGATgcagc                <  1:20499677/35‑1 (MQ=255)
                     aCGATGTGTTTTTTGCGCCGATGCCGGATgcagca               <  1:19963249/35‑1 (MQ=255)
                     aCGATGTGTTTTTTGCGCCGATGCCGGATgcagca               <  1:7506100/35‑1 (MQ=255)
                     aCGATGTGTTTTTTGCGCCGATGCCGCCTgcaggc               >  1:12024669/1‑33 (MQ=25)
                      cGATGTGTTTTTTGCGCCGATGCCGGATGCAGCAt              <  1:10760749/35‑1 (MQ=255)
                      cGATGTGTTTTTTGCGCCGATGCCGGATGCAGCAt              <  1:13346625/35‑1 (MQ=255)
                      cGATGTGTTTTTTGCGCCGATGCCCGCTgcagcac              >  1:14288014/1‑34 (MQ=25)
                       gATGTGTTTTTTGCGCCGATGCCGGATGCAGCAtt             <  1:1584127/35‑1 (MQ=255)
                       gATGTGTTTTTTGCGCCGATGCCGGATGCAGCAtt             >  1:18524229/1‑35 (MQ=255)
                       gATGTGTTTTTTGCGCCGATGCCGGATGCAGCAtt             >  1:5530207/1‑35 (MQ=255)
                        aTGTGTTTTTTGCGCCGATGCCGGATGCAGCAttt            <  1:3764650/35‑1 (MQ=255)
                        aTGTGTTTTTTGCGCCGATGCCGGATGCAGCAttt            <  1:9524905/35‑1 (MQ=255)
                        aTGTGTTTTTTGCGCCGATGCCGGATGCAGCAttt            <  1:8643904/35‑1 (MQ=255)
                         tgtgTTTTTTGCGCCGATGCCGGATGCAGCATTTa           <  1:7300571/35‑1 (MQ=255)
                         tgtgTTTTTTGCGCCGATGCCGGATGCAGCATTTa           <  1:17793772/35‑1 (MQ=255)
                         tgtgTTTTTTGCGCCGATGCCGGATGCAGCATTTa           <  1:5171924/35‑1 (MQ=255)
                         tgtgTTTTTTGCGCCGATGCCGGATGCAGCATTTa           <  1:6007733/35‑1 (MQ=255)
                          gtgtTTTTTGCGCCGATGCCGGATGCAGCATTTAc          <  1:13825873/35‑1 (MQ=255)
                          gtgtTTTTTGCGCCGATGCCGGATGCAGCATTTAc          <  1:15997251/35‑1 (MQ=255)
                           tgtTTTTTtagccgatgccgccctgcatatctgcc         >  1:674702‑M2/1‑8 (MQ=255)
                           tgtTTTTTGCGCCGATGCCGGATGCAGGCTTTAcg         >  1:18587701/1‑35 (MQ=25)
                           tgtTTTTTGCGCCGATGCCGGATGCAGCATTTAcg         <  1:8401892/35‑1 (MQ=255)
                           tgtTTTTTGCGCCGATGCCGGATGCAGCATTTAcg         <  1:19953610/35‑1 (MQ=255)
                            gtTTTTTtagccgatgccgccctgcgtatctgcca        >  1:4488996‑M2/1‑7 (MQ=255)
                            gtTTTTTGCGCCGATGCCGGATGCAGCATTTAcgc        <  1:17150659/35‑1 (MQ=255)
                            gtTTTTTGCGCCGATGCCGGATGCAGCATTTAcgc        <  1:4545634/35‑1 (MQ=255)
                            gtTTTTTGCGCCGATGCCGGATGCAGCATTTAcgc        <  1:2970414/35‑1 (MQ=255)
                             tttttttagccgatgccgccctgcgtatctgccac       >  1:13624852‑M2/1‑6 (MQ=255)
                             ttttttGCGCCGATGCCGGATGCAGCATTTAcgcc       <  1:17935340/35‑1 (MQ=255)
                             ttttttGCGCCGATGCCGGATGCAGCATTTAcgcc       <  1:617061/35‑1 (MQ=255)
                             ttttttGCGCCGATGCCGGATGCAGCATTTAcgcc       <  1:4178407/35‑1 (MQ=255)
                             ttttttGCGCCGATGCCGGATGCAGCATTTAcgcc       <  1:9272995/35‑1 (MQ=255)
                              tttttGCGCCGATGCCGGATGCAGCATTTAcgccg      <  1:19391927/35‑1 (MQ=255)
                              tttttGCGCCGATGCCGGATGCAGCATTTAcgccg      <  1:17651934/35‑1 (MQ=255)
                              tttttGCGCCGATGCCGGATGCAGCATTTAcgccg      <  1:8592924/35‑1 (MQ=255)
                               ttttGCGCCGATGCCGGATGCAGCATTTAcgccgc     >  1:19816142/1‑35 (MQ=255)
                                ttttacccgatgccgccctgcgtatctgccacaca    >  1:14153899‑M2/1‑3 (MQ=255)
                                tttGCGCCGATGCCGGATGCAGCATTTACGCCGCa    <  1:10930918/35‑1 (MQ=255)
                                tttGCGCCGATGCCGGATGCAGCATTTACGCCGCa    >  1:12166444/1‑35 (MQ=255)
                                tgttagccgatgccgccctgcgtatctgccacaca    >  1:6851068‑M2/3‑3 (MQ=255)
                                 tttagccgatgccgccctgcgtatctgtcacacag   >  1:1811277‑M2/1‑2 (MQ=255)
                                 ttGCGCCGATGCCGGATGCAGCATTTACGCCGCAt   <  1:12545669/35‑1 (MQ=255)
                                 ttGCGCCGATGCCGGATGCAGCATTTACGCCGCAt   <  1:9267024/35‑1 (MQ=255)
                                  ttagccgatgccgccctgcgtatctgccacacagt  >  1:2946702‑M2/1‑1 (MQ=255)
                                  ttagccgatgccgccctgcgtatctgccacacagt  >  1:5327017‑M2/1‑1 (MQ=255)
                                  ttagccgatgcagccctgcgtatctgccacacagt  >  1:2686087‑M2/1‑1 (MQ=255)
                                  |                                  
AATCGCGATGTTGTTTAGTTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCATTTACGCCGCATC  >  REL606/661428‑661496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.