New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 418706983 (0.810)13 (0.170) 5/36 NT 15.8% coding (49/1590 nt) purH bifunctionalphosphoribosylaminoimidazolecarboxam ide formyltransferase/IMP cyclohydrolase
?REL606 = 4402608 76 (0.990)intergenic (+67/+62) sgaE/yjfY L‑ribulose 5‑phosphate 4‑epimerase/hypothetical protein

Only 100 of 189 total aligned reads displayed.

ATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAGCCCCCTGAGAAGGGGGCAAAGCAAACTATG  >  REL606/4402575‑4402642
                                 |                                  
aTAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAa                                   <  1:9854235‑M2/35‑2 (MQ=255)
aTAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAa                                   >  1:10444375‑M2/1‑34 (MQ=255)
 tAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAaa                                  <  1:1384223‑M2/35‑3 (MQ=255)
 tAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAaa                                  <  1:18424991‑M2/35‑3 (MQ=255)
 tAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAaa                                  <  1:15890470‑M2/35‑3 (MQ=255)
  aaCTGGTCTAATTCCGCAGCCGTTTTTCAAAAaaa                                 <  1:14907281‑M2/35‑4 (MQ=255)
  aaCTGGTCTAATTCCGCAGCCGTTTTTCAAAAaaa                                 <  1:14352927‑M2/35‑4 (MQ=255)
   aCTGGTCTAATTCCGCAGCCGTTTTTCAAAAaaag                                <  1:14662376‑M2/35‑5 (MQ=255)
    cTGGTCTAATTCCGCAGCCGTTTTTCAAAAaaagc                               <  1:7614877‑M2/35‑6 (MQ=255)
    cTGGTCTAATTCCGCAGCCGTTTTTCAAAAaaagc                               <  1:5822437‑M2/35‑6 (MQ=255)
    cTGGTCTAATTCCGCAGCCGTTTTTCAAAAaaagc                               <  1:19076849‑M2/35‑6 (MQ=255)
     tgttCTAATCCCCCAGCCGTTTTTCAAAAAAAGcc                              <  1:17679112/32‑1 (MQ=25)
     tGGTCTAATTCCGCAGCCGTTTTTCAAAAaaagcc                              <  1:1924920‑M2/35‑7 (MQ=255)
      ggTCTAATTCCGCAGCCGTTTTTCAAAAAAAGccc                             >  1:17769494/1‑35 (MQ=255)
      ggTCTAATTCCGCAGCCGTTTTTCAAAAAAAGccc                             >  1:4867013/1‑35 (MQ=255)
      ggTCTAATCCCGCAGCCGTTTTTCAAAAAAAGccc                             <  1:2820633/35‑1 (MQ=255)
       ttCTAATCCCCCAGCCGTTTTTCAAAAAAAGcccc                            <  1:4773708/34‑1 (MQ=37)
       gTCTAATTCCGCAGCCGTTTTTCAAAAAAAGcccc                            >  1:8637892/1‑35 (MQ=255)
        tCTACTCCCGCAGCCGTTTTTCAAAAAAAGccccc                           <  1:498115/35‑1 (MQ=37)
        tCTAATTCCGCAGCCGTTTTTCAAAAAAAGccccc                           >  1:3832170/1‑35 (MQ=255)
        tCTAATTCCGCAGCCGTTTTTCAAAAAAAGccccc                           <  1:4162854/35‑1 (MQ=255)
        tCTAATTCCGCAGCCGTTTTTCAAAAAAAGccccc                           >  1:4354188/1‑35 (MQ=255)
        tCTAATTCCGCAGCCGTTTTTCAAAAAAAGccccc                           >  1:12253143/1‑35 (MQ=255)
        tCTAATTCCGCAGCCGTTTTTCAAAAAAAGccccc                           >  1:615567/1‑35 (MQ=255)
        tCTAATTCCGCAGCCGTTTTTCAAAAAAAGccccc                           >  1:6696688/1‑35 (MQ=255)
        tCTAATCCCGCAGCCGTTTTTCAAAAAAAGccccc                           <  1:10008638/35‑1 (MQ=255)
         cTAATTCCCCAGCCGTTTTTCAAAAAAAGCCCCCt                          <  1:6415707/35‑1 (MQ=255)
          tAATTCCGCAGCCGTTTTTCAAAAAAAGCCCCCTg                         <  1:20079792/35‑1 (MQ=255)
          tAATTCCGCAGCCGTTTTTCAAAAAAAGCCCCCTg                         <  1:20549140/35‑1 (MQ=255)
          tAATTCCGCAGCCGTTTTTCAAAAAAAGCCCCCTg                         <  1:9914983/35‑1 (MQ=255)
          tAATTCCGCAGCCGTTTTTCAAAAAAAGCCCCCTg                         >  1:16386822/1‑35 (MQ=255)
          tAATTCCGCAGCCGTTTTTCAAAAAAAGCCCCCTg                         >  1:11962330/1‑35 (MQ=255)
          tAATCCCGCAGCCGTTTTTCAAAAAAAGCCCCCTg                         <  1:11377132/35‑1 (MQ=255)
          tAATCCCGCAGCCGTTTTTCAAAAAAAGCCCCCTg                         <  1:14097084/35‑1 (MQ=255)
          tAATCCCGCAGCCGTTTTTCAAAAAAAGCCCCCTg                         <  1:14486305/35‑1 (MQ=255)
             ttCCGCAGCCGTTTTTCAAAAAAAGCCCCCTgaga                      >  1:17632872/1‑35 (MQ=255)
             ttCCGCAGCCGTTTTTCAAAAAAAGCCCCCTgaga                      >  1:18601265/1‑35 (MQ=255)
             tcccGCAGCCGTTTTTCAAAAAAAGCCCCCTgaga                      <  1:16108480/33‑1 (MQ=255)
              tCCGCAGCCGTTTTTCAAAAAAAGCCCCCTGAGaa                     >  1:10367614/1‑35 (MQ=255)
               ccGCAGCCGTTTTTCAAAAAAAGCCCCCTGAGAAg                    <  1:3705627/35‑1 (MQ=255)
                cGCAGCCGTTTTTCAAAAAAAGCCCCCTGAGAAgg                   <  1:2100307/35‑1 (MQ=255)
                 gCAGCCGTTTTTCAAAAAAAGCCCCCTGAGAAggg                  >  1:19718711/1‑35 (MQ=255)
                 gCAGCCGTTTTTCAAAAAAAGCCCCCTGAGAAggg                  >  1:1094459/1‑35 (MQ=255)
                 gCAGCCGTTTTTC‑‑AAAAAGCCCCCTGAGAAggggg                <  1:11419772/35‑1 (MQ=25)
                  cAGCCGTTTTTCAAAAAAAGCCCCCTGAGAAgggg                 <  1:9455283/35‑1 (MQ=255)
                  cAGCCGTTTTTCAAAAAAAGCCCCCTGAGAAgggg                 >  1:18902813/1‑35 (MQ=255)
                   aGCCGTTTTTCAAAAAAAGCCCCCTGAGAAggggg                >  1:18813385/1‑35 (MQ=255)
                    tgagtttTTCAAAAaaagccggtatcgtcgaattc               >  1:17985605‑M2/4‑14 (MQ=255)
                    gCCGTTTTTCAAAAAAAGCCCCCTGAGAAGGGGgc               >  1:2470126/1‑35 (MQ=255)
                    gCCGTTTTTCAAAAAAAGCCCCCTGAGAAGGGGgc               >  1:2180228/1‑35 (MQ=255)
                     cggttTTTCAAAAaaagccggtatcgtcgaattcg              >  1:17311248‑M2/3‑13 (MQ=255)
                     ccGTTTTTCAAAAAAAGCCCCCTGAGAAGGGGgca              <  1:11480998/35‑1 (MQ=255)
                     ccGTTTTTCAAAAAAAGCCCCCTGAGAAGGGGgca              >  1:5465172/1‑35 (MQ=255)
                     ccGTTTTTCAAAAAAAGCCCCCTGAGAAGGGGgca              >  1:7684405/1‑35 (MQ=255)
                      cGTTTTTCAAAAAAAGCCCCCTGAGAAGGGGgcaa             <  1:8049092/35‑1 (MQ=255)
                       ttttttcTAAAaaagccggtatcgtcgaattcgcc            >  1:19478113‑M2/2‑11 (MQ=255)
                       ttttttcGAAAaaagccggtatcgtcgaattcgcc            >  1:10131480‑M2/2‑11 (MQ=255)
                       gTTTTTCAAAAAAAGCCCCCTGAGAAGGGGgcaaa            >  1:10804595/1‑35 (MQ=255)
                       gTTTTTCAAAAAAAGCCCCCTGAGAAGGGGgcaaa            <  1:17446754/35‑1 (MQ=255)
                       gTTTTTCAAAAAAAGCCCCCTGAGAAGGGGgcaaa            <  1:15522758/35‑1 (MQ=255)
                       gTTTTTCAAAAAAAGCCCCCTGAGAAGGGGgcaaa            >  1:267133/1‑35 (MQ=255)
                       gTTTTTCAAAAAAAGCCCCCTGAGAAGGGGgcaaa            >  1:11414628/1‑35 (MQ=255)
                       gTTTTTCAAAAAAAGCCCCCTGAGAAGGGGgcaaa            <  1:9674504/35‑1 (MQ=255)
                       gTTTTTCAAAAAAAGCCCCCTGAGAAGGGGgcaaa            >  1:12662177/1‑35 (MQ=255)
                        tttttCAAAAaaagccggtatcgtcgaattcgccc           >  1:5182341‑M2/1‑10 (MQ=255)
                        tttttCAAAAAAAGCCCCCTGAGAAGGGGgcaaag           <  1:5739570/35‑1 (MQ=255)
                        tttttCAAAAAAAGCCCCCTGAGAAGGGGgcaaag           >  1:15178720/1‑35 (MQ=255)
                        tttttCAAAAAAAGCCCCCTGAGAAGGGGgcaaag           >  1:18880100/1‑35 (MQ=255)
                        tttttCAAAAAAAGCCCCCTGAGAAGGGGgcaaag           <  1:15935435/35‑1 (MQ=255)
                        tttttCAAAAAAAGCCCCCTGAGAAGGGGgaaaag           <  1:10509976/35‑1 (MQ=255)
                         ttttCAAAAaaagccggtatcgtcgaattcgccca          >  1:16634873‑M2/1‑9 (MQ=255)
                         ttttCAAAAAAAGCCCCCTGAGAAGGGGgcaaagc          <  1:7226702/35‑1 (MQ=255)
                         ttttCAAAAAAAGCCCCCTGAGAAGGGGgcaaagc          >  1:6253078/1‑35 (MQ=255)
                         ttttCAAAAAAAGCCCCCTGAGAAGGGGgcaaagc          <  1:15682003/35‑1 (MQ=255)
                         gtttcTAAAaaagccggtatcgtcgaattcgccca          >  1:13407386‑M2/2‑9 (MQ=255)
                          tttCAAAAaaagccggtatcgtcgaattcgcccag         >  1:12905056‑M2/1‑8 (MQ=255)
                          tttCAAAAAAAGCCCCCTGAGAAGGGGgcaaagca         >  1:8409843/1‑35 (MQ=255)
                          tttCAAAAAAAGCCCCCTAAGAAGGGGgcaaagca         <  1:596336/35‑1 (MQ=255)
                           ttCTAAAaaagccggtatcgtcgaattcgcccagg        >  1:6114756‑M2/1‑7 (MQ=255)
                           ttCAAAAaaagccggtatcgtcgaattcgcccagg        >  1:7917367‑M2/1‑7 (MQ=255)
                           ttCAAAAAAAGCCCCCTGAGAAGGGGgcaaagcaa        <  1:20460141/35‑1 (MQ=255)
                            tgtaaaaaagccggtatcgtcgaattcgcccaggc       >  1:7788883‑M2/4‑6 (MQ=255)
                            tCAAAAAAAGCCCCCTGAGAAGGGGgcaaagcaaa       <  1:20358497/35‑1 (MQ=255)
                            tCAAAAAAAGCCCCCTGAGAAGGGGgcaaagcaaa       <  1:19775248/35‑1 (MQ=255)
                             cAAAAAAAGCCCCCTGAGAAGGGGGCAAAGCAAAc      <  1:334428/35‑1 (MQ=255)
                             cAAAAAAAGCCCCCTGAGAAGGGGGCAAAGCAAAc      <  1:8352484/35‑1 (MQ=255)
                             aaaaaaaaGCCCCCTGAGAAGGGGGCAAAGCAAAc      <  1:16803081/34‑1 (MQ=255)
                              aaaaaaaGCCCCCTGAGAAGGGGGCAAAGCAAACt     >  1:8681570/1‑35 (MQ=255)
                              aaaaaaaGCCCCCTGAGAAGGGGGCAAAGCAAACt     <  1:15458187/35‑1 (MQ=255)
                              aaaaaaaGCCCCCTGAGAAGGGGGCAAAGCAAACt     <  1:13243266/35‑1 (MQ=255)
                              aaaaaaaGCCCCCTGAGAAGGGGGCAAAGCAAACt     >  1:13758521/1‑35 (MQ=255)
                              aaaaaaaGCCCCCTGAGAAGGGGGCAAAGCAAACt     >  1:3577921/1‑35 (MQ=255)
                              aaaaaaaGCCCCCTGAGAAGGGGGCAAAGCAAACt     >  1:13710942/1‑35 (MQ=255)
                               aaaaaaGCCCCCTGAGAAGGGTGCAAAGCAAACTa    >  1:6314123/1‑35 (MQ=255)
                               aaaaaaGCCCCCTGAGAAGGGGGCAAAGCAAACTa    >  1:6860891/1‑35 (MQ=255)
                                aaaaaGCCCCCTGAGAAGGGGGCAAAGCAAACTAt   <  1:1108621/35‑1 (MQ=255)
                                 aaaagccggtatcgtcgaattcgcccaggcacttt  >  1:6076953‑M2/1‑1 (MQ=255)
                                 aaaaGCCCCCTGAGAAGGGGGCAAAGCAAACTATg  <  1:19005865/35‑1 (MQ=255)
                                 aaaaGCCCCCTGAGAAGGGGGCAAAGCAAACTATg  <  1:3923509/35‑1 (MQ=255)
                                 aaaaGCCCCCTGAGAAGGGGGCAAAGCAAACTATg  <  1:3433752/35‑1 (MQ=255)
                                 |                                  
ATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAGCCCCCTGAGAAGGGGGCAAAGCAAACTATG  >  REL606/4402575‑4402642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.