New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 699047102 (0.990)3 (0.040) 3/36 NT 4.6% coding (1314/1320 nt) potE putrescine/proton symporter: putrescine/ornithine antiporter
?REL606 1115826 = 48 (0.620)coding (428/834 nt) csgG outer membrane lipoprotein

Only 100 of 119 total aligned reads displayed.

AACCCCGCCAGATTTGACGTTGCTTTCATAACCGATAATCGAACCTTCAACCATGATATTTGCCGCCGT  >  REL606/1115792‑1115860
                                  |                                  
aaCCCCGCCAGATTTGACGTTGCTTTCATAACCGa                                    >  1:13980176/1‑35 (MQ=255)
aaCCCCGCCAGATTTGACGTTGCTTTCATAACCGa                                    >  1:12622920/1‑35 (MQ=255)
 aCCCCGCCAGATTTGACGTTGCTTTCATAACCGAt                                   >  1:11734827/1‑35 (MQ=255)
 aCCCCGCCAGATTTGACGTTGCTTTCATAACCGAt                                   >  1:5421326/1‑35 (MQ=255)
  ccccGCCAGATTTGACGTTGCTTTCATAACCGATa                                  >  1:15243019/1‑35 (MQ=255)
   cccGCCAGATTTGACGTTTCTTTCATAACCGATaa                                 >  1:11698811/1‑35 (MQ=255)
   cccGCCAGATTTGACGTTGCTTTCATAACCGATaa                                 >  1:20302827/1‑35 (MQ=255)
   cccGCCAGATTTGACGTTGCTTTCATAACCGATaa                                 >  1:9525936/1‑35 (MQ=255)
    ccGCCAGATTTGACGTTGCTTTCATAACCGATAAt                                >  1:16165424/1‑35 (MQ=255)
    ccGCCAGATTTGACGTTGCTTTCATAACCGATAAt                                >  1:5482992/1‑35 (MQ=255)
      gCCAGATTTGACGTTGCTTTCATAACCGATAATCg                              >  1:16645434/1‑35 (MQ=255)
      gCCAGATTTGACGTTGCTTTCATAACCGATAATCg                              >  1:5379534/1‑35 (MQ=255)
      gCCAGATTTGACGTTGCTTTCATAACCGATAATCg                              >  1:6829737/1‑35 (MQ=255)
       ccAGATTTGACGTTGCTTTCATAACCGATAATCGa                             >  1:15800228/1‑35 (MQ=255)
       ccAGATTTGACGTTGCTTTCATAACCGATAATCGa                             >  1:17939325/1‑35 (MQ=255)
        cAGATTTGACGTTGCTTTGATAAACGATAATCGaa                            >  1:3091501/1‑35 (MQ=37)
        cAGATTTGACGTTGCTTTCATAACCGATAATCGaa                            >  1:19155489/1‑35 (MQ=255)
         aGATTTGACGTTGCTTTCATAACCGATAATCGAAc                           >  1:10343626/1‑35 (MQ=255)
         aGATTTGACGTTGCTTTCATAACCGATAATCGAAc                           >  1:3846966/1‑35 (MQ=255)
         aGATTTGACGTTGCTTTCATAACCGATAATCGAAc                           >  1:17512120/1‑35 (MQ=255)
          gATTTGACGTTGCTTTCATAACCGATAATCGAAcc                          >  1:19170837/1‑35 (MQ=255)
          gATTTGACGTTGCTTTCATAACCGATAATCGAAcc                          >  1:12654786/1‑35 (MQ=255)
           aTTTGACGTTGCTTTCATAACCGATAATCGAACCt                         >  1:17682675/1‑35 (MQ=255)
           aTTTGACGTTGCTTTCATAACCGATAATCGAACCt                         >  1:10316927/1‑35 (MQ=255)
           aTTTGACGTTGCTTTCATAACCGATAATCGAACCt                         >  1:3001487/1‑35 (MQ=255)
           aTTTGACGTTGCTTTCATAACCGATAATCGAACCt                         >  1:11340843/1‑35 (MQ=255)
            tttGACGTTGCTTTCATAACCGATAATCGAACCtt                        >  1:20365544/1‑35 (MQ=255)
            tttGACGTTGCTTTCATAACCGATAATCGAACCtt                        >  1:16056420/1‑35 (MQ=255)
             ttGACGTTGCTTTCATAACCGATAATCGAACCTTc                       >  1:2864643/1‑35 (MQ=255)
             ttGACGTTGCTTTCATAACCGATAATCGAACCTTc                       >  1:18121630/1‑35 (MQ=255)
              tGACGTTGCTTTCATAACCGATAATCGAACCTTCa                      >  1:2939569/1‑35 (MQ=255)
              tGACGTTGCTTTCATAACCGATAATCGAACCTCCa                      >  1:505749/1‑35 (MQ=255)
               gACGTTGCTTTCATAACCGATAATCGAACCTTCaa                     >  1:14658263/1‑35 (MQ=255)
                aCGTTGCTTTCATAACCGATAATCTAACCTTCAAc                    >  1:15793452/1‑35 (MQ=255)
                aCGTTGCTTTCATAACCGATAATCGAACCTTCAAc                    >  1:11661203/1‑35 (MQ=255)
                aCGTTGCTTTCATAACCGATAATCGAACCTTCAAc                    >  1:7811006/1‑35 (MQ=255)
                aCGTTGCTTTCATAACCGATAATCGAACCTTCAAc                    >  1:14540759/1‑35 (MQ=255)
                 cGTTGCTTTCATAACCGATAATCGAACCTTCAAcc                   >  1:19705552/1‑35 (MQ=255)
                  ttttttttattaaccgATAATCGAACCTTCAACCa                  <  1:8154830‑M2/19‑1 (MQ=255)
                  gTTGCTTTCATAACCGATAATCGAACCTTCAACCa                  >  1:1311176/1‑35 (MQ=255)
                  gTTGCTTTCATAACCGATAATCGAACCTTCAACCa                  >  1:8830524/1‑35 (MQ=255)
                  gTTGCTTTCATAACCGATAATCGAACCTTCAACCa                  >  1:938599/1‑35 (MQ=255)
                   ttGCTTTCATAACCGATAATCGAACCTTCAACCAt                 >  1:967252/1‑35 (MQ=255)
                    tgttttattaaccgATAATCGAACCTTCAACCATg                <  1:1042575‑M2/21‑1 (MQ=255)
                    tGCTTTCATAACCGATAATCGAACCTTCAACCATg                >  1:18281611/1‑35 (MQ=255)
                     tttttTATAACCGATAATCGAACCTTCAACCATGa               <  1:11151287/33‑1 (MQ=38)
                     tcTTTAATAACCGATAATCGAACCTTCAACCATGa               <  1:7932970/34‑1 (MQ=255)
                     gttttAATACCCGATAATCGAACCTTCAACCATGa               <  1:3887652/33‑1 (MQ=37)
                     gCTTTCATAACCGATAATCGAACCTTCAACCATGa               >  1:10123960/1‑35 (MQ=255)
                     gCTTTCATAACCGATAATCGAACCTTCAACCATGa               >  1:16692534/1‑35 (MQ=255)
                     gCTTTCATAACCGATAATCGAACCTTCAACCATGa               >  1:11004290/1‑35 (MQ=255)
                      ttttattacccgATAATCGAACCTTCAACCATGat              <  1:4410517‑M2/23‑1 (MQ=255)
                      cTTTCATAACCGATAATCGAACCTTCAACCATGat              >  1:13578512/1‑35 (MQ=255)
                       ttttttaaccgATAATCGAACCTTCAACCATGata             <  1:10364598‑M2/24‑1 (MQ=255)
                       tttCATAACCGATAATCGAACCTTCAACCATGata             >  1:16716862/1‑35 (MQ=255)
                       tttCATAACCGATAATCGAACCTTCAACCATGata             >  1:2685426/1‑35 (MQ=255)
                       tttAATACCCGATAATCGAACCTTCAACCATGata             <  1:12992821/35‑1 (MQ=38)
                        ttattacccgATAATCGAACCTTCAACCATGatat            <  1:7347313‑M2/25‑1 (MQ=255)
                         ttaTAACCGATAATCGAACCTTCAACCATGATAtt           <  1:11613548/33‑1 (MQ=255)
                         tattacccgATAATCGAACCTTCAACCATGATAtt           <  1:12576869‑M2/26‑1 (MQ=255)
                         tCATAACCGATAATCGAACCTTCAACCATGATAtt           >  1:1958994/1‑35 (MQ=255)
                          tttacccgATAATCGAACCTTCAACCATGATAttt          <  1:16650938‑M2/27‑1 (MQ=255)
                           aTACCCGATAATCGAACCTTCAACCATGATATTTg         <  1:20145864/35‑1 (MQ=255)
                           aTAACCGATAATCGAACCTTCAACCATGATATTTg         <  1:7298084/35‑1 (MQ=255)
                           aTAACCGATAATCGAACCTTCAACCATGATATTTg         >  1:8689694/1‑35 (MQ=255)
                            tacccgATAATCGAACCTTCAACCATGATATTTgc        <  1:9138567‑M2/29‑1 (MQ=255)
                            taaccgATAATCGAACCTTCAACCATGATATTTgc        >  1:15322215‑M2/7‑35 (MQ=255)
                            aacccgATAATCGAACCTTCAACCATGATATTTgc        <  1:1334634‑M2/29‑1 (MQ=255)
                             acccgATAATCGAACCTTCAACCATGATATTTgcc       <  1:10563753‑M2/30‑1 (MQ=255)
                             acccgATAATCGAACCTTCAACCATGATATTTgcc       <  1:15023743‑M2/30‑1 (MQ=255)
                             aaccgATAATCGAACCTTCAACCATGATATTTgcc       >  1:14558672‑M2/6‑35 (MQ=255)
                             aaccgATAATCGAACCTTCAACCATGATATTTgcc       >  1:8854644‑M2/6‑35 (MQ=255)
                             aaccgATAATCGAACCTTCAACCATGATATTTgcc       >  1:10990672‑M2/6‑35 (MQ=255)
                              cccgATAATCGAACCTTCAACCATGATATTTgccg      <  1:19909414‑M2/31‑1 (MQ=255)
                              cccgATAATCGAACCTTCAACCATGATATTTgccg      <  1:16377686‑M2/31‑1 (MQ=255)
                              accgATAATCGAACCTTCAACCATGATATTTgccg      >  1:8005977‑M2/5‑35 (MQ=255)
                              accgATAATCGAACCTTCAACCATGATATTTgccg      >  1:9491175‑M2/5‑35 (MQ=255)
                              accgATAATCGAACCTTCAACCATGATATTTgccg      >  1:12459575‑M2/5‑35 (MQ=255)
                              accgATAATCGAACCTTCAACCATGATATTTgccg      >  1:2457518‑M2/5‑35 (MQ=255)
                               ccgATAATCGAACCTTCAACCATGATATTTgccgc     >  1:8011588‑M2/4‑35 (MQ=255)
                               ccgATAATCGAACCTTCAACCATGATATTTgccgc     <  1:18107064‑M2/32‑1 (MQ=255)
                               ccgATAATCGAACCTTCAACCATGATATTTgccgc     >  1:7119290‑M2/4‑35 (MQ=255)
                               ccgATAATCGAACCTTCAACCATGATATTTgccgc     <  1:9204716‑M2/32‑1 (MQ=255)
                                ctaTAATCGAACCTTCAACCATGATATTTgccgcc    >  1:728146/3‑35 (MQ=255)
                                cgATAATCGAACCTTCAACCATGATATTTgccgcc    >  1:11327226‑M2/3‑35 (MQ=255)
                                cgATAATCGAACCTTCAACCATGATATTTgccgcc    >  1:12094488‑M2/3‑35 (MQ=255)
                                cgATAATCGAACCTTCAACCATGATATTTgccgcc    >  1:12578887‑M2/3‑35 (MQ=255)
                                cgATAATCGAACCTTCAACCATGATATTTgccgcc    <  1:20436379‑M2/33‑1 (MQ=255)
                                cgATAATCGAACCTTCAACCATGATATTTgccgcc    >  1:20313118‑M2/3‑35 (MQ=255)
                                cgATAATCGAACCTTCAACCATGATATTTgccgcc    >  1:19333584‑M2/3‑35 (MQ=255)
                                 gATAATCGAACCTTCAACCATGATATTTGccgccg   >  1:7290782‑M2/2‑35 (MQ=255)
                                 gATAATCGAACCTTCAACCATGATATTTGccgccg   >  1:7270096‑M2/2‑35 (MQ=255)
                                 gATAATCGAACCTTCAACCATGATATTTGccgccg   >  1:18387387‑M2/2‑35 (MQ=255)
                                 gATAATCGAACCTTCAACCATGATATTTGccgccg   >  1:14396925‑M2/2‑35 (MQ=255)
                                 gATAATCGAACCTTCAACCATGATATTTGccgccg   >  1:20139421‑M2/2‑35 (MQ=255)
                                 gATAATCGAACCTTCAACCATGATATTTGccgccg   >  1:9539325‑M2/2‑35 (MQ=255)
                                  aTAATCGAACCTTCAACCATGATATTTGCCGCCGt  >  1:6146291/1‑35 (MQ=255)
                                  aTAATCGAACCTTCAACCATGATATTTGCCGCCGt  >  1:6140117/1‑35 (MQ=255)
                                  aTAATCGAACCTTCAACCATGATATTTGCCGCCGt  >  1:2084291/1‑35 (MQ=255)
                                  aTAATCGAACCTTCAACCATGATATTTGCCGCCGt  >  1:1396619/1‑35 (MQ=255)
                                  |                                  
AACCCCGCCAGATTTGACGTTGCTTTCATAACCGATAATCGAACCTTCAACCATGATATTTGCCGCCGT  >  REL606/1115792‑1115860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.