Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,990 IS150 (+) +3 bp 100% intergenic (‑32/‑496) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16990 =0 (0.000)81 (0.790) 38/48 NT 100% intergenic (‑32/‑498) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 590471 NA (NA)noncoding (1977/1977 nt) IS150 repeat region
* ? REL606 = 169920 (0.000)58 (0.560) 29/48 NT 100% intergenic (‑34/‑496) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 140 total aligned reads displayed.

ATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCA  >  REL606/2775846‑2775911
                               |                                  
aTTTCATCGTCCAACAAAATGGGTGCAGTACAGGt                                 >  1:11391668/1‑35 (MQ=35)
aTTTCATCGTCCAACAAAATGGGTGCAGTACAGGt                                 >  1:19790586/1‑35 (MQ=35)
aTTTCATCGTCCAACAAAATGGGTGCAGTACAGGt                                 >  1:12509750/1‑35 (MQ=35)
 tttCATCGTCCAACAAAATGGGTGCAGTACAGGtt                                >  1:8945493/1‑35 (MQ=38)
 tttCATCGTCCAACAAAATGGGTGCAGTACAGGtt                                >  1:732183/1‑35 (MQ=38)
 tttCATCGTCCAACAAAATGGGTGCAGTACAGGtt                                <  1:6367704/35‑1 (MQ=38)
  ttCATCGTCCAACAAAATGGGTGCAGTACAGGTTg                               <  1:4188680/35‑1 (MQ=40)
  ttCATCGTCCAACAAAATGGGTGCAGTACAGGTTg                               >  1:20003993/1‑35 (MQ=40)
  ttCATCGTCCAACAAAATGGGTGCAGTACAGGTTg                               <  1:18994380/35‑1 (MQ=40)
   tCATCGTCCAACAAAATGGGTGCAGTACAGGTTGa                              >  1:11602415/1‑35 (MQ=255)
    cATCGTCCAACAAAATGGTTGCAGTACATGTTGAt                             >  1:15931975/1‑35 (MQ=14)
    cATCGTCCAACAAAATGGGTGCAGTACAGGTTGAt                             <  1:9567473/35‑1 (MQ=255)
    cATCGTCCAACAAAATGGGTGCAGTACAGGTTGAt                             <  1:20347770/35‑1 (MQ=255)
    cATCGTCCAACAAAATGGGTGCAGTACAGGTTGAt                             <  1:17924716/35‑1 (MQ=255)
    cATCGTCCAACAAAATGGGTGCAGTACAGGTTGAt                             >  1:13038637/1‑35 (MQ=255)
      tCGTCCAACAAAATGGGTGCAGTACAGGTTGATAg                           <  1:2565498/35‑1 (MQ=255)
      tCGTCCAACAAAATGGGTGCAGTACAGGTTGATAg                           <  1:4136594/35‑1 (MQ=255)
       cGTCCAACAAAATGGGTGCAGTACAGGTTGATAGa                          <  1:6626832/35‑1 (MQ=255)
        gTCCAACAAAATGGGTGCAGTACAGGTTGATAGaa                         <  1:551015/35‑1 (MQ=255)
        gTCCAACAAAATGGGTGCAGTACAGGTTGATAGaa                         <  1:19394883/35‑1 (MQ=255)
         tCCAACAAAATGGGTGCAGTACAGGTTGATAGaaa                        <  1:13390095/35‑1 (MQ=255)
         tCCAACAAAATGGGTGCAGTACAGGTTGATAGaaa                        >  1:15079742/1‑35 (MQ=255)
          ccAACAAAATGGGTGCAGTACAGGTTGATAGAAat                       >  1:10022408/1‑35 (MQ=255)
           caacaaAATGGGTGCAGTACAGGTTGATAGAAata                      <  1:7877101/35‑1 (MQ=255)
           caacaaAATGGGTGCAGTACAGGTTGATAGAAata                      >  1:18267736/1‑35 (MQ=255)
           caacaaAATGGGTGCAGTACAGGTTGATAGAAata                      >  1:10114472/1‑35 (MQ=255)
           caacaaAATGGGTGCAGTACAGGTTGATAGAAata                      <  1:5468672/35‑1 (MQ=255)
           caacaaAATGGGTGCAGTACAGTTGATAGAAatat                     >  1:3149072/1‑35 (MQ=18)
            aacaaAATGGGTGCAGTACAGGTTGATAGAAatat                     <  1:13354518/35‑1 (MQ=255)
            aacaaAATGGGTGCAGTACAGGTTGATAGAAatat                     >  1:12069055/1‑35 (MQ=255)
            aacaaAATGGGTGCAGTACAGTTGATAGAAATATc                    >  1:8843925/1‑35 (MQ=18)
             acaaAATGGGTGCAGTACAGGTTGATAGAAatatg                    <  1:11148114/35‑2 (MQ=255)
             acaaAATGGGTGCAGTACAGGTTGATAGAAATATc                    >  1:1926304/1‑35 (MQ=255)
             acaaAATGGGTGCAGTACAGGTTGATAGAAATATc                    >  1:11577841/1‑35 (MQ=255)
             acaaAATGGGTGCAGTACAGGTTGATAGAAATATc                    <  1:16138628/35‑1 (MQ=255)
             acaaAATGGGTGCAGTACAGGTTGATAGAAATATc                    >  1:15404812/1‑35 (MQ=255)
             acaaAATGGGTGCAGTACAGGTTGATAGAAATATc                    <  1:4765661/35‑1 (MQ=255)
             acaaAATGGGTGCAGTACAGGTTGATAGAAATATc                    <  1:2306376/35‑1 (MQ=255)
              caaAATGGGTGCAGTACAGGTTGATAGAAATATCg                   <  1:50327/35‑1 (MQ=255)
              caaAATGGGTGCAGTACAGGTTGATAGAAATATCg                   >  1:19529140/1‑35 (MQ=255)
              caaAATGGGTGCAGTACAGGTTGATAGAAATATCg                   >  1:5659222/1‑35 (MQ=255)
              caaAATGGGTGCAGTACAGGTTGATAGAAATATCg                   <  1:10311281/35‑1 (MQ=255)
              caaAATGGGTGCAGTACAGGTTGATAGAAATATCg                   <  1:7030259/35‑1 (MQ=255)
              caaAATGGGTGCAGTACAGGTTGATAGAAATATCg                   <  1:1582698/35‑1 (MQ=255)
               aaaaTGGGTGCAGTACAGGTTGATAGAAATATCGc                  >  1:13242009/1‑35 (MQ=255)
               aaaaTGGGTGCAGTACAGGTTGATAGAAATATCGc                  <  1:2110093/35‑1 (MQ=255)
                aaaTGGGTGCAGTACAGGTTGATAGAAATATCGcc                 <  1:1745035/35‑1 (MQ=255)
                aaaTGGGTGCAGTACAGGTTGATAGAAATATCGcc                 >  1:8659815/1‑35 (MQ=255)
                 aaTGGGTGCAGTACAGGTTGATAGAAATATCGCCt                <  1:2945271/35‑1 (MQ=255)
                 aaTGGGTGCAGTACAGGTTGATAGAAATATCGCCt                <  1:14923920/35‑1 (MQ=255)
                 aaTGGGTGCAGTACAGGTTGATAGAAATATCGCCt                <  1:7129263/35‑1 (MQ=255)
                 aaTGGGTGCAGTACAGGTTGATAGAAATATCGCCt                >  1:19598407/1‑35 (MQ=255)
                 aaTGGGCGCAGTACAGGTTGATAGAAATATCGCCt                >  1:14823600/1‑35 (MQ=255)
                  aTGGGTGCAGTACAGGTTTATAGAAATATCGCCTg               >  1:300127/1‑35 (MQ=255)
                  aTGGGTGCAGTACAGGTTTATAGAAATATCGCCTg               >  1:12613110/1‑35 (MQ=255)
                  aTGGGTGCAGTACAGGTTGATAGAAATATCGCCTg               <  1:319694/35‑1 (MQ=255)
                    gggTGCAGTACTGGTTGATAGAAATATCGCCTggg             <  1:19328265/35‑1 (MQ=255)
                     ggTGCAGTACAGGTTGATAGAAATATCGCCTgggg            <  1:371806/35‑1 (MQ=255)
                     ggTGCAGTACAGGTTGATAGAAATATCGCCTgggg            >  1:20459506/1‑35 (MQ=255)
                      gTGCAGTACAGGTTGATAGAAATATCGCCTGGGGc           <  1:3549960/35‑1 (MQ=255)
                      gTGCAGTACAGGTTGATAGAAATATCGCCTGGGGc           <  1:6110358/35‑1 (MQ=255)
                      gTGCAGTACAGGTTGATAGAAATATCGCCTGGGGc           <  1:5627953/35‑1 (MQ=255)
                      gTGCAGTACAGGTTGATAGAAATATCGCCTGGGGc           >  1:12747215/1‑35 (MQ=255)
                      gTGCAGTACAGGTTGATAGAAATATCGCCTGGGGc           >  1:20013810/1‑35 (MQ=255)
                      gTGCAGTAAAGGTTGATAGAAATATCGCCTGGGGc           <  1:7787031/35‑1 (MQ=255)
                       tGCAGTACAGGTTGATAGAAATATCGCCTGGGGCt          <  1:11722240/35‑1 (MQ=255)
                       tGCAGTACAGGTTGATAGAAATATCGCCTGGGGCt          >  1:5290955/1‑35 (MQ=255)
                       tGCAGTACAGGTTGATAGAAATATCGCCTGGGGCt          >  1:4502623/1‑35 (MQ=255)
                        gaaGTACAGGTTGATAGAAATATCGCCTGGGGCtt         <  1:3553891/33‑1 (MQ=255)
                        gCAGTACAGGTTGATAGAAATATCGCCTGGGGCtt         <  1:8540646/35‑1 (MQ=255)
                        gCAGTACAGGTTGATAGAAATATCGCCTGGGGCtt         >  1:14924263/1‑35 (MQ=255)
                        gCAGTACAGGTTGATAGAAATATCGCCTGGGGCtt         <  1:7132933/35‑1 (MQ=255)
                        gCAGTACAGGTTGATAGAAATATCGCCTGGGGCtt         <  1:8602717/35‑1 (MQ=255)
                         cAGTACAGGTTGATAGAAATATCGCCTGGGGCttt        >  1:16996117/1‑35 (MQ=255)
                          aGTACAGGTTGATAGAAATATCGCCTGGGGCtttt       <  1:15129426/35‑1 (MQ=255)
                          aGTACAGGTTGATAGAAATATCGCCTGGGGCtttt       >  1:8512084/1‑35 (MQ=255)
                          aGTACAGGTTGATAGAAATATCGCCTGGGGCtttt       <  1:3294711/35‑1 (MQ=255)
                          aGTACAGGTTGATAGAAATATCGCCTGGGGCtttt       <  1:18735536/35‑1 (MQ=255)
                           gTACAGGTTGATAGAAATATCGCCTGGGGCttttt      >  1:272361/1‑34 (MQ=255)
                           gTACAGGTTGATAGAAATATCGCCTGGGGCTTTTg      <  1:17624847/35‑1 (MQ=255)
                           gTACAGGTTGATAGAAATATCGCCTGGGGCTTTTg      >  1:1989602/1‑35 (MQ=255)
                           gTACAGGTTGATAGAAATATCGCCTGGGGCTTTTg      >  1:10706471/1‑35 (MQ=255)
                           gTACAGGTTGATAGAAATATCGCCTGGGGCTTTTg      <  1:10372027/35‑1 (MQ=255)
                           gTACAGGTTGATAGAAATATCGCCTGGGGCTTTTg      >  1:3578597/1‑35 (MQ=255)
                           gTACAGGTTGATAGAAATATCGCCTGGGGCTTTTg      <  1:10054587/35‑1 (MQ=255)
                            tACAGGTTGATAGAAATATCGCCTGGGGCTTTTGt     <  1:17322751/35‑1 (MQ=255)
                            tACAGGTTGATAGAAATATCGCCTGGGGCTTTTGt     >  1:12038225/1‑35 (MQ=255)
                            tACAGGTTGATAGAAATATCGCCTGGGGCTTTTGt     >  1:19801643/1‑35 (MQ=255)
                            tACAGGTTGATAGAAATATCGCCTGGGGCTTTTGt     >  1:3168078/1‑35 (MQ=255)
                             aCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTc    >  1:8425094/1‑35 (MQ=255)
                             aCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTc    <  1:5748002/35‑1 (MQ=255)
                             aCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTc    <  1:20481643/35‑1 (MQ=255)
                             aCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTc    <  1:3315882/35‑1 (MQ=255)
                             aCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTc    <  1:9504400/35‑1 (MQ=255)
                              cAGGTTGATAGAAATATCGCCTGGGGCTTTTGTcc   <  1:18705018/35‑1 (MQ=255)
                              cAGGTTGATAGAAATATCGCCTGGGGCTTTTGTcc   >  1:8632347/1‑35 (MQ=255)
                              cAGGTTGATAGAAATATCGCCTGGGGCTTTTGTcc   >  1:20583101/1‑35 (MQ=255)
                              cAGGTTGATAGAAATATCGCCTGGGGCTTTTGTcc   >  1:3482168/1‑35 (MQ=255)
                               aGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCa  <  1:1858115/35‑1 (MQ=255)
                               aGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCa  >  1:15566924/1‑35 (MQ=255)
                               |                                  
ATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCA  >  REL606/2775846‑2775911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.