Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 16,990 | IS150 (+) +3 bp | 100% | intergenic (‑32/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 16990 = | 0 (0.000) | 81 (0.790) | 38/48 | NT | 100% | intergenic (‑32/‑498) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
* | ? | REL606 | = 16992 | 0 (0.000) | 58 (0.560) | 29/48 | NT | 100% | intergenic (‑34/‑496) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region |
Only 100 of 111 total aligned reads displayed.
GTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTGCCACTCCAAACCCGAACAATTTG > REL606/590440‑590505 | gtTTAACTGTCCAACTTTTTGGGGTCAGTACA‑ccc < 1:3139012/35‑1 (MQ=38) gtTTAACTGTCCAACTTTTTGGGGTCAGTACA‑ccc > 1:6191215/1‑35 (MQ=38) tttAACTGTCCAACTTTTTGGGGTCAGTACA‑cccc > 1:18416705/1‑34 (MQ=38) tttAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCt < 1:2644291/35‑1 (MQ=38) tttAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCt > 1:3350905/1‑35 (MQ=38) tttAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCt < 1:3613019/35‑1 (MQ=38) tttAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCt < 1:1244522/35‑1 (MQ=38) tttAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCt > 1:17931190/1‑35 (MQ=38) ttcaaCTGTCCAACTTTTTGGGGTCAGTACA‑CCCt < 1:3811043/32‑1 (MQ=255) ttAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCTg < 1:5789950/35‑1 (MQ=38) ttAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCTg < 1:13043217/35‑1 (MQ=38) ttAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCTg < 1:5027842/35‑1 (MQ=38) ttAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCTg > 1:16143237/1‑35 (MQ=38) ttAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCTg < 1:17618604/35‑1 (MQ=38) ttAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCTg > 1:7996049/1‑35 (MQ=38) ttAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCTg > 1:8937797/1‑35 (MQ=38) ttAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCTg > 1:910266/1‑35 (MQ=38) tAACTGTCCATCTTTTTGGGGTCAGTACA‑CCCTgg > 1:222377/1‑35 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCTgg < 1:1108839/35‑1 (MQ=40) tAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCTgg < 1:20463177/35‑1 (MQ=40) aaCTGTCCAACTTTTTGTGGTCAGTACA‑ACCCggg < 1:801538/35‑1 (MQ=11) aaCTGTCCAACTTTTTGGGGTCAGTACA‑CCCTggg < 1:18098231/35‑1 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACA‑CCCTggg < 1:16395210/35‑1 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACA‑CCCTggg < 1:5776239/35‑1 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACA‑CCCTggg > 1:13290374/1‑35 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTACA‑CCCTgggg > 1:4849035/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGc > 1:8687322/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGc > 1:14449308/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGc > 1:12103893/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGc > 1:15819083/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGc < 1:1284571/35‑1 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGc > 1:1213249/1‑35 (MQ=255) tGTCCAACTTTTTGGGGTCAGTACA‑CTCTGGGGCt < 1:5299748/35‑1 (MQ=255) tGTCCAACTTTTTGGGGTCAGTACA‑CCCTTGGGCt > 1:3366574/1‑35 (MQ=255) tGTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCt > 1:517931/1‑35 (MQ=255) tGTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCt > 1:8779026/1‑35 (MQ=255) tGTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCt > 1:4235965/1‑35 (MQ=255) tGTCCAACGTTTTGGGGTCAGTACA‑CCCTGGGGCt < 1:10291019/35‑1 (MQ=255) gTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTg < 1:10960119/35‑1 (MQ=255) gTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTg < 1:10456491/35‑1 (MQ=255) gTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTg > 1:3939964/1‑35 (MQ=255) gTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTg < 1:17359370/35‑1 (MQ=255) gTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTg > 1:62365/1‑35 (MQ=255) gTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTg > 1:16317675/1‑35 (MQ=255) gTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTg < 1:5952861/35‑1 (MQ=255) gTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTg < 1:13044258/35‑1 (MQ=255) tCCAACTTTTTGGGGTCAGTACA‑TCGTGCGGcaaa > 1:6610374/1‑32 (MQ=11) tCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTGc > 1:9397405/1‑35 (MQ=255) tCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTGc > 1:16305514/1‑35 (MQ=255) ccAACTTTTTGGGGTCTGTACA‑CCCTGGGGCTGcc > 1:5850180/1‑35 (MQ=255) ccAACTTTTTGGGGTCAGTACAGCTCTGGGGCttc < 1:6906025/35‑3 (MQ=11) ccAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTGcc > 1:6976805/1‑35 (MQ=255) ccAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTGcc < 1:3776972/35‑1 (MQ=255) ccAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTGcc < 1:14379511/35‑1 (MQ=255) ccAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTGcc > 1:18904785/1‑35 (MQ=255) ccAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTGcc > 1:10003754/1‑35 (MQ=255) cAACTTTTTGGGTTCAGTACA‑CCCTGGGGCTGCCa > 1:6101315/1‑35 (MQ=255) cAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTGCCa > 1:19143241/1‑35 (MQ=255) cAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTGCCa > 1:7948501/1‑35 (MQ=255) cAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTGCCa > 1:12401187/1‑35 (MQ=255) aaCTTTTTGGGGTCAGTACA‑CCCTGGGGCTGCCAc > 1:2572785/1‑35 (MQ=255) aaCTTTTTGGGGTCAGTACA‑CCCTGGGGCTGCCAc > 1:4370929/1‑35 (MQ=255) aaCTTTTTGGGGTCAGTACA‑CCCTGGGGCTGCCAc > 1:20396069/1‑35 (MQ=255) aaCTTTTTGGGGTCAGTACA‑CCCTGGGGCTGCCAc > 1:12430578/1‑35 (MQ=255) aCTTTTTTGGGTCAGTACA‑CCCTGGGGCTGCCACt > 1:19403834/1‑35 (MQ=255) aCTTTTTGGGGTCAGTACA‑CCCTGGGGCTGCCACt > 1:8588726/1‑35 (MQ=255) aCTTTTTGGGGTCAGTACA‑CCCTGGGGCTGCCACt > 1:19068426/1‑35 (MQ=255) cTTTTTGGGGTCAGTACA‑CCCTGGGGCTGCCACTc > 1:15647175/1‑35 (MQ=255) tttttGGGGTCAGTACA‑CCCTGGGGCTGCCACTcc > 1:12750001/1‑35 (MQ=255) tttttGGGGTCAGTACA‑CCCTGGGGCTGCCACTcc > 1:16245758/1‑35 (MQ=255) ttttGGGGTCAGTACA‑CCCTGGGGCTGCCACTCCa > 1:9390806/1‑35 (MQ=255) ttttGGGGTCAGTACA‑CCCTGGGGCTGCCACTCCa > 1:1409558/1‑35 (MQ=255) tttGGGGTCATTACA‑CCCTGGGGCTGCCACTCCaa > 1:12148837/1‑35 (MQ=255) ttGGGGTCAGTACA‑CCCTGGGGCTGCCACTCCaaa > 1:5129254/1‑35 (MQ=255) tGGGGTCAGTACA‑CCCTGGGGCTGCCACTCCaaga > 1:6617338/1‑33 (MQ=255) tGGGGTCAGTACA‑CCCTGGGGCTGCCACTCCAAAc > 1:6017187/1‑35 (MQ=255) tGGGGTCAGTACA‑CCCTGGGGCTGCCACTCCAAAc > 1:12507751/1‑35 (MQ=255) ggggTCAGTACA‑CCCTGGGGCTGCCACTCCAAAcc > 1:17320934/1‑35 (MQ=255) ggggTCAGTACA‑CCCTGGGGCTGCCACTCCAAAcc > 1:11198913/1‑35 (MQ=255) ggggTCAGTACA‑CCCTGGGGCTGCCACTCCAAAcc > 1:17740532/1‑35 (MQ=255) gggTCAGTACA‑CCCTGGTGCTGCCACTCCAAAccc > 1:8571489/1‑35 (MQ=255) gggTCAGTACA‑CCCTGGGGCTGCCACTCCAAAccc > 1:12206338/1‑35 (MQ=255) gggTCAGTACA‑CCCTGGGGCTGCCACTCCAAAccc > 1:12905115/1‑35 (MQ=255) gggTCAGTACA‑CCCTGGGGCTGCCACCCCAAAccc > 1:430329/1‑35 (MQ=255) gggTCAGTACA‑CCC‑GGGGCTGCCACTCCAAACCCg > 1:2411562/1‑35 (MQ=255) gTCAGTACA‑CCCTGGGGCTGCCACTCCAAACCCGa > 1:8336807/1‑35 (MQ=255) cAGTACA‑CCCTGGGGCTGCCACTCCAAACCCGAAc > 1:5382104/1‑35 (MQ=255) cAGTACA‑CCCTGGCGCTGCCACTCCAAACCCGAAc < 1:2535343/35‑1 (MQ=255) aGTACA‑CCCTGGGGCTGCCACTCCAAACCCGAACa > 1:15687562/1‑35 (MQ=255) gTACA‑CCCTGGGGCTGCCACTCCAAACCCGAACaa > 1:5711450/1‑35 (MQ=255) gTACA‑CCCTGGGGCTGCCACTCCAAACCCGAACaa > 1:14917243/1‑35 (MQ=255) gTACA‑CCCTGGGGCTGCCACTCCAAACCCGAACaa > 1:11346207/1‑35 (MQ=255) gTACA‑CCCTGGGGCTGCCACTCCAAACCCGAACaa > 1:17683258/1‑35 (MQ=255) gTACA‑CCCTGGGGCTGCCACTCCAAACCCGAACaa > 1:9074123/1‑35 (MQ=255) ctcca‑cCCGGGGGCTGCCACTCCAAACCCGAACaa < 1:11032707/32‑1 (MQ=255) tACA‑CCCTGGGGCTGCCACTCCAAACCCGAACAAt > 1:13362927/1‑35 (MQ=255) aca‑cCCTGGGGCTGCCACTCCAAACCCGAACAAtt > 1:8025767/1‑35 (MQ=255) aca‑cCCTGGGGCTGCCACTCCAAACCCGAACAAtt > 1:1757567/1‑35 (MQ=255) a‑cCCTGGGGCTGCCACTCCAAACCCGAACAATTTg > 1:11197123/1‑35 (MQ=255) a‑cCCTGGGGCTACCACTCCAAACCCGAACAATTTg > 1:10783749/1‑35 (MQ=255) | GTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑CCCTGGGGCTGCCACTCCAAACCCGAACAATTTG > REL606/590440‑590505 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |