New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 5 (0.050) | 5/46 | NT | 5.3% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | = 4415712 | 90 (0.910) | coding (850/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
Only 100 of 146 total aligned reads displayed.
GTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGC > REL606/4415678‑4415746 | gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTttg > 1:6641919/1‑35 (MQ=255) tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGt < 1:6506952‑M2/35‑2 (MQ=255) tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGt > 1:760567‑M2/1‑34 (MQ=255) tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGt > 1:11569198‑M2/1‑34 (MQ=255) tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGt > 1:16015047‑M2/1‑34 (MQ=255) tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGt < 1:554506‑M2/35‑2 (MQ=255) ggAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgtt < 1:2896608/35‑1 (MQ=255) ggAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgtt < 1:535449/35‑1 (MQ=255) ggAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgtt < 1:1106037/35‑1 (MQ=255) ggAGTTCGGTAGTCACGGAGAAAAGCCCGTttgtt < 1:7792592/35‑1 (MQ=255) gAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgttg > 1:5918974/1‑35 (MQ=255) aGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgta > 1:19346761‑M2/1‑31 (MQ=255) aGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGa > 1:12259460/1‑35 (MQ=255) gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGaa > 1:9506145/1‑35 (MQ=255) gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGaa < 1:18560802/35‑1 (MQ=255) gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGaa > 1:19438570/1‑35 (MQ=255) ttCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtact > 1:5690821‑M2/1‑29 (MQ=255) ttCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtact > 1:444259‑M2/1‑29 (MQ=255) tCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACt < 1:5562285/35‑1 (MQ=255) tCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACt < 1:13589088/35‑1 (MQ=255) cGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTg < 1:3286300/35‑1 (MQ=255) cGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTg < 1:19869694/35‑1 (MQ=255) cGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTg < 1:19828439/35‑1 (MQ=255) ggTAGTCCCTGAGAAAAGCCCGTTTGTTGAACTGt > 1:8939744/1‑35 (MQ=255) ggTAGTCCCGGAGAAAAGCCCGTTTGtgtactgac > 1:2233858‑M2/1‑26 (MQ=255) ggTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGt > 1:13574637/1‑35 (MQ=255) ggTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGt < 1:14683937/35‑1 (MQ=255) ggTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGt < 1:6390609/35‑1 (MQ=255) gTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGtt < 1:6974723/35‑1 (MQ=255) tAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTc < 1:5681111/35‑1 (MQ=255) tAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTc < 1:9762545/35‑1 (MQ=255) tAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTc < 1:13150990/35‑1 (MQ=255) tAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTc < 1:15861180/35‑1 (MQ=255) gTCCCGGAGAAAAGCCCGTTTGtgtactgacccca > 1:1372567‑M2/1‑22 (MQ=255) tCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCgtg > 1:16190679/1‑35 (MQ=255) tCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCgtg > 1:4984624/1‑35 (MQ=255) cccGGAGAAAAGCCCGTTTGTTGAACTGTTCgtgt < 1:867092/35‑1 (MQ=255) cccGGAGAAAAGCCCGTTTGTTGAACTGTTCgtgt < 1:18760768/35‑1 (MQ=255) cccGGAGAAAAGCCCGTTTGTTGAACTGTTCgtgt > 1:19085955/1‑35 (MQ=255) cccGGAGAAAAGCCCGTTTGTTGAACTGTTCgtgt > 1:19512451/1‑35 (MQ=255) ccGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGtt < 1:11892130/35‑1 (MQ=255) ccGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGtt > 1:6533648/1‑35 (MQ=255) ccGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGtt > 1:9390066/1‑35 (MQ=255) ccGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGtt < 1:19730676/35‑1 (MQ=255) cGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTg < 1:399597/35‑1 (MQ=255) cGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTg < 1:2764709/35‑1 (MQ=255) cGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTg > 1:5658939/1‑35 (MQ=255) ggAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTgg < 1:10240283/35‑1 (MQ=255) gagaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGt < 1:18598526/35‑1 (MQ=255) gagaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGt > 1:11017431/1‑35 (MQ=255) gagaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGt < 1:2457357/35‑1 (MQ=255) ctaaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTa < 1:8169333/33‑1 (MQ=255) agaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTa > 1:13891463/1‑35 (MQ=255) gaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAg > 1:5343588/1‑35 (MQ=255) gaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAg > 1:10631228/1‑35 (MQ=255) gaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAg < 1:19973946/35‑1 (MQ=255) gaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAg > 1:20245003/1‑35 (MQ=255) gaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAg > 1:3619562/1‑35 (MQ=255) aaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTaag > 1:502015/1‑33 (MQ=255) aaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTAgg > 1:11219355/1‑35 (MQ=255) aaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTAgg > 1:12248410/1‑35 (MQ=255) aaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTAgg > 1:2530240/1‑35 (MQ=255) aaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTAgg < 1:20059491/35‑1 (MQ=255) aaaaGCCCGTTTGTTGAACTGTTCGTGTTGGTAgg < 1:16054846/35‑1 (MQ=255) aaaGCCCGTTTGtgtactgaccccaaaaagttgga > 1:16495139‑M2/1‑12 (MQ=255) aaaGCCCGTTTGTTGAACTGTTCGTGTTGGTAggg > 1:10217690/1‑35 (MQ=255) aaaGCCCGTTTGTTGAACTGTTCGTGTTGGGAggg > 1:9460728/1‑35 (MQ=255) aaaGCCCGTTTGTTGAACTGTTCGTGTTGGGAggg > 1:6548381/1‑35 (MQ=255) aaGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGc < 1:1316904/35‑1 (MQ=255) aaGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGc < 1:20353520/35‑1 (MQ=255) aaGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGc > 1:9124792/1‑35 (MQ=255) aaGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGc < 1:14100202/35‑1 (MQ=255) aGCCGGTTTGTTGAACTGTTCGTGTTGGTAGGGct < 1:12222275/35‑1 (MQ=255) aGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGct < 1:7598167/35‑1 (MQ=255) aGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGct < 1:4523461/35‑1 (MQ=255) aGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGct > 1:16781688/1‑35 (MQ=255) gCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctg > 1:10046671/1‑35 (MQ=255) gCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctg < 1:15602156/35‑1 (MQ=255) gCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctg < 1:1913865/35‑1 (MQ=255) gCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctg > 1:2223899/1‑35 (MQ=255) cccGTTTGTTGAACTGTTCGCGTTGGTAGGGctgc > 1:7221571/1‑35 (MQ=255) ccGTTTGTTGAACTGTTCGTGTTGGTAGGGctgcc > 1:137656/1‑35 (MQ=255) cGTTTGTTGAACTGTTCGTGTTGGTAGGGctgcct > 1:6713835/1‑35 (MQ=255) cGTTTGTTGAACTGTTCGTGTTGGTAGGGctgcct > 1:17495956/1‑35 (MQ=255) cGTTTGTTGAACTGTTCGTGTTGGTAGGGctgccc > 1:5858256/1‑34 (MQ=255) gTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctg < 1:4807875/35‑1 (MQ=255) gTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctg > 1:15449515/1‑35 (MQ=255) gTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctg > 1:13946737/1‑35 (MQ=255) gTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctg < 1:14390381/35‑1 (MQ=255) gTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctg > 1:14332347/1‑35 (MQ=255) tttGTTGAACTGTTCGTGTTGGTAGGGctgcctgc < 1:4650796/35‑1 (MQ=255) tttGTTGAACTGTTCGTGTTGGTAGGGctgcctgc < 1:7593971/35‑1 (MQ=255) tttGTTGAACTGTTCGTGTTGGTAGGGctgcctgc > 1:8711128/1‑35 (MQ=255) ttgttgAACTGTTCGTGTTGGTAGGGCTGCctgct > 1:11340011/1‑35 (MQ=255) tgttgAACTGTTCGTGTTGTTAGGGCTGCctgctg > 1:3389648/1‑35 (MQ=255) tgttgAACTGTTCGTGTTGGTAGGGctgcctgccg > 1:1062705/1‑33 (MQ=255) tgttgAACTGTTCGTGTTGGTAGGGCTGCctgctg > 1:15307331/1‑35 (MQ=255) tgttgAACTGTTCGTGTTGGTAGGGCTGCctgctg < 1:394687/35‑1 (MQ=255) gttgAACTGTTCGTGTTGGTAGGGCTGCCtgctgc < 1:13992518/35‑1 (MQ=255) gttgAACTGTTCGTGTTGGTAGGGCTGCCtgctgc > 1:20185177/1‑35 (MQ=255) | GTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGC > REL606/4415678‑4415746 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |