Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,648,342 IS1 (–) +9 bp 28.2% intergenic (+195/‑221) ynfM → / → asr predicted transporter/acid shock protein precursor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1323488NA (NA)22 (0.210) 18/48 NT 26.6% noncoding (768/768 nt) IS1 repeat region
?REL606 = 1648350 38 (0.590)intergenic (+203/‑221) ynfM/asr predicted transporter/acid shock protein precursor
* ? REL606 1648342 =36 (0.600)7 (0.090) 6/36 NT 13.1% intergenic (+195/‑229) ynfM/asr predicted transporter/acid shock protein precursor
?REL606 = 3024712 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 306 total aligned reads displayed.

ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGCTTCCTGAAGTAATTTTTCTGCGATAAAAAGA  >  REL606/3024678‑3024746
                                  |                                  
ctcataCACTAAATCAGTAAGTTGGCANCATCACC                                    >  1:14466829‑M2/2‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTTGCAGCATCACC                                    <  1:11758890‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCATCATCACC                                    <  1:3139132‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:7041429‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:6854881‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:16488565‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:16510653‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:16674425‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:17072188‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:6293440‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:5908226‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:5747701‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:18554717‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:18738341‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:18882545‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:1915157‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:19241853‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:5433932‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:19610832‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:5165118‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:19910203‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:4723997‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:20256986‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:2253689‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:4254733‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:399230‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:3309158‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:2973022‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:974040‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:10235085‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:9460107‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:8697280‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:12475848‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:8338587‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:12922504‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:13265843‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:14097270‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:7825971‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:15824632‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:15413460‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:15156754‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    >  1:14865717‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACC                                    <  1:14588548‑M2/35‑1 (MQ=255)
atcatACACTAAATCAGTAAATTGGCAGCATCACC                                    >  1:10274330‑M2/1‑35 (MQ=255)
atcatACACTAAATAAGTAAGTTGGCAGCATCACC                                    >  1:9525093‑M2/1‑35 (MQ=255)
  catACACTAAATCAGTAAGTTGGCAGCATCACCcg                                  >  1:13823059‑M2/1‑33 (MQ=255)
  catACACTAAATCAGTAAGTTGGCAGCATCACCcg                                  >  1:15640196‑M2/1‑33 (MQ=255)
  catACACTAAATCAGTAAGTTGGCAGCATCACCcg                                  >  1:2547670‑M2/1‑33 (MQ=255)
  catACACTAAATCAGTAAGTTGGCAGCATCACCcg                                  >  1:18219344‑M2/1‑33 (MQ=255)
  catACACTAAATCAGTAAGTTGGCAGCATCACCcg                                  <  1:16251464‑M2/35‑3 (MQ=255)
  catACACTAAATCAGTAAGTTGGCAGCATCACCcg                                  >  1:1114706‑M2/1‑33 (MQ=255)
  catACACTAAATCAGTAAGTTGGCAGCATCACCcg                                  >  1:9044434‑M2/1‑33 (MQ=255)
   atACACTAAATCAGTAAGTTGGCAGCATCACCcgc                                 >  1:12380815‑M2/1‑32 (MQ=255)
   atACACTAAATCAGTAAGTTGGCAGCATCACCcgc                                 >  1:4352692‑M2/1‑32 (MQ=255)
     acacTAAATCAGTAAGTTGGCAGCATCACCcgctt                               >  1:10611184‑M2/1‑30 (MQ=255)
     acacTAAATCAGTAAGTTGGCAGCATCACCcgctt                               <  1:11596160‑M2/35‑6 (MQ=255)
     acacTAAATCAGTAAGTTGGCAGCATCACCcgctt                               <  1:13201916‑M2/35‑6 (MQ=255)
      cacTAAATCAGTAAGTTGGCAGCATCACCCGCTTc                              <  1:17707717/35‑1 (MQ=40)
      cacTAAATCAGTAAGTTGGCAGCATCACCCGCTTc                              <  1:7184935/35‑1 (MQ=40)
      cacTAAATCAGTAAGTTGGCAGCATCACCCGCTTc                              >  1:18370630/1‑35 (MQ=40)
      cacTAAATCAGTAAGTTGGCAGCATAACCCGCTTc                              <  1:16788400/35‑1 (MQ=255)
       acTAAATCAGTAAGTTGGCAGCATCACCCGCTTcc                             >  1:1953451/1‑35 (MQ=255)
       acTAAATCAGTAAGTTGGCAGCATCACCCGCTTcc                             >  1:17330211/1‑35 (MQ=255)
        cTAAATCAGTAAGTTGGCAGCATCACCcgctttgt                            <  1:10032007‑M2/35‑9 (MQ=255)
        cTAAATCAGTAAGTTGGCAGCATCACCCGCTTCCt                            <  1:10695351/35‑1 (MQ=255)
        cTAAATCAGTAAGTTGGCAGCATCACCCGCTTCCt                            >  1:5033689/1‑35 (MQ=255)
          aaaTCAGTAAGTTGGCAGCATCACCCGCTTCCTGa                          <  1:2870225/35‑1 (MQ=255)
           aaTCAGTAAGTTGGCAGCATCACCcgctttgtaag                         >  1:8915488‑M2/1‑24 (MQ=255)
           aaTCAGTAAGTTGGCAGCATCACCCGCTTCCTGaa                         <  1:14359896/35‑1 (MQ=255)
            aTCAGTAAGTTGGCAGCATCACCCGCTTCCTGAAg                        <  1:2402668/35‑1 (MQ=255)
             tCAGTAAGTTGGCAGCATCACCCGCTTCCTGAAGt                       <  1:6587466/35‑1 (MQ=255)
              cAGTAAGTTGGCAGCATCACCCGCTTCCTGAAGTa                      >  1:3907708/1‑35 (MQ=255)
               aGTAAGTTGGCAGCATCACCCGCTTCCTGAAGTaa                     <  1:9967504/35‑1 (MQ=255)
               aGTAAGTTGGCAGCATCACCCGCTTCCTGAAGTaa                     >  1:714847/1‑35 (MQ=255)
                  aaGTTGGCAGCATCACCCGCTTCCTGAAGTAAttt                  >  1:2824043/1‑35 (MQ=255)
                  aaGTTGGCAGCATCACCCGCTTCCTGAAGTAAttt                  >  1:18116169/1‑35 (MQ=255)
                  aaGTTGGCAGCATCACCCGCTTCCTGAAGTAAttt                  <  1:5959709/35‑1 (MQ=255)
                   aGTTGGCAGCATCACCCGCTTCCTGAAGTAAtttt                 <  1:17912890/35‑1 (MQ=255)
                    gTTGGCAGCATCACCCGCTTCCTGAAGTAAttttt                >  1:10846969/1‑35 (MQ=255)
                      tGGCAGCATCACCCGCTTCCTGAAGTAATTTTTCt              >  1:12710588/1‑35 (MQ=255)
                      tGGCAGCATCACCCGCTTCCTGAAGTAATTTTTCt              <  1:20487717/35‑1 (MQ=255)
                       ggCAGCATCACCCGCTTCCTGAAGTAATTTTTCTg             <  1:5235125/35‑1 (MQ=255)
                        gcagcaTCACCCGATTCCTGAAGTAATTTTTCTGc            <  1:19424885/35‑1 (MQ=255)
                         cagcaTCACCCGCTTCCTGAAGTAATTTTTCTGCg           >  1:20103569/1‑35 (MQ=255)
                          agcaTCACCcgctttgtaagtagtaaaatagttaa          <  1:16133894‑M2/35‑27 (MQ=255)
                          agcaTCACCCGCTTCCTGAAGTAATTTTTCTGCGa          >  1:410411/1‑35 (MQ=255)
                          agcaTCACCCGCTTCCTGAAGTAATTTTTCTGCGa          <  1:1474678/35‑1 (MQ=255)
                          agcaTCACCCGCTTCCTGAAGTAATTTTTCTGCGa          <  1:10366188/35‑1 (MQ=255)
                            caTCACCCGCTTCCTGAAGTAATTTTTCTGCGATa        >  1:7629892/1‑35 (MQ=255)
                              tCACCcgctttgtaagtagtaaaatagttaacccg      >  1:8561479‑M2/1‑5 (MQ=255)
                               cACCCGCTTCCTGAAGTAATTTTTCTGCGATaaaa     <  1:11947014/35‑1 (MQ=255)
                                aCCCGCTTCCTGAAGTAATTTTTCTGCGATaaaaa    <  1:19760861/35‑1 (MQ=255)
                                aCCCGCTTCCTGAAGTAATTTTTCTGCGATaaaaa    >  1:7286271/1‑35 (MQ=255)
                                 cccgctttgtaagtagtaaaatagttaaaccgatc   >  1:8077489‑M2/1‑2 (MQ=255)
                                  ccgctttgtaagtagtaaaatagttaacccgatcn  >  1:9287313‑M2/1‑1 (MQ=255)
                                  ccgctttgtaagtagtaaaatagttaacccgatca  >  1:3374726‑M2/1‑1 (MQ=255)
                                  ccgctttgtaagtagtaaaatagttaacccgatca  >  1:18332120‑M2/1‑1 (MQ=255)
                                  ccGCTTCCTGAAGTAATTTTTCTGCGATAAAAAGa  >  1:3597772/1‑35 (MQ=255)
                                  ccGCTTCCTGAAGTAATTTTTCTGCGATAAAAAGa  <  1:2352439/35‑1 (MQ=255)
                                  ccGCTTCCTGAAGTAATTTTTCTGCGATAAAAAGa  <  1:15919921/35‑1 (MQ=255)
                                  |                                  
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGCTTCCTGAAGTAATTTTTCTGCGATAAAAAGA  >  REL606/3024678‑3024746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.