New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3476747 =59 (0.570)10 (0.120) 3/38 NT 12.0% coding (1924/2085 nt) malQ 4‑alpha‑glucanotransferase (amylomaltase)
?REL606 4031309 = 100 (1.230)coding (968/1374 nt) hemN coproporphyrinogen III oxidase

Only 100 of 156 total aligned reads displayed.

CTGGTGCCAGGAATATTCACCGGTTCGGCCATATCCAGCCAGTCTTCCGGCTGTAGTCCTAACAGAGCA  >  REL606/3476713‑3476781
                                  |                                  
tcgccaatcatgctgatggcggaaacgcccatccc                                    >  1:5200193‑M1/35‑35 (MQ=255)
tcgccaatcatgctgatggcggaaacgcccatccc                                    <  1:19879455‑M1/1‑1 (MQ=255)
tcgccaatcatgctgatggcggaaacgcccatccc                                    <  1:19661742‑M1/1‑1 (MQ=255)
cTGGTGCCAGTAATATTCACCGGTTCGGCCATATc                                    >  1:7746378/1‑35 (MQ=255)
cTGGTGCCAGGAATATTCACCGTTTCGGCCATATc                                    >  1:8850792/1‑35 (MQ=255)
cTGGTGCCAGGAATATTCACCGGTTCGGCCATATc                                    <  1:7383375/35‑1 (MQ=255)
cTGGTGCCAGGAATATTCACCGGTTCGGCCATATc                                    >  1:4268019/1‑35 (MQ=255)
cTGGTGCCAGGAATATTCACCGGTTCGGCCATATc                                    >  1:2868762/1‑35 (MQ=255)
cTGGTGCCAGGAATATTCACCGGTTCGGCCATATc                                    >  1:20011644/1‑35 (MQ=255)
cTGGTGCCAGGAATATTCACCGGTTCGGCCATATc                                    <  1:17774413/35‑1 (MQ=255)
 tGGTGCCAGGAATATTCCCCGGTTCGGCCATATcc                                   <  1:830760/35‑1 (MQ=255)
 tGGTGCCAGGAATATTCACCGGTTCGGCCATATcc                                   <  1:10004686/35‑1 (MQ=255)
 tGGTGCCAGGAATATTCACCGGTTCGGCCATATcc                                   >  1:2669423/1‑35 (MQ=255)
 tGGTGCCAGGAATATTCACCGGTTCGGCCATATcc                                   <  1:2468982/35‑1 (MQ=255)
 tGGTGCCAGGAATATTCACCGGTTCGGCCATATcc                                   >  1:18899731/1‑35 (MQ=255)
 tGGTGCAAGGAATATTCACCGGTTCGGCCATATcc                                   <  1:19439064/35‑1 (MQ=255)
 tGGGGCCAGGAATATTCCCCGGTTCGGCCATATcc                                   <  1:20124160/35‑1 (MQ=37)
 cgccaatcatgctgatggcggaaacgcccatcccc                                   >  1:13502089‑M1/34‑35 (MQ=255)
 cgccaatcatgctgatggcggaaacgcccatcccc                                   >  1:13022765‑M1/34‑35 (MQ=255)
 cgccaatcatgctgatggcggaaacgcccatcccc                                   >  1:18092888‑M1/34‑35 (MQ=255)
 cgccaatcatgctgatggcggaaacgcccatcccc                                   >  1:16973424‑M1/34‑35 (MQ=255)
  ggTGCCAGGAATATTCACCGGTTCGGCCATATcca                                  >  1:9506918/1‑35 (MQ=255)
  ggTGCCAGGAATATTCACCGGTTCGGCCATATcca                                  <  1:9220830/35‑1 (MQ=255)
  ggTGCCAGGAATATTCACCGGTTCGGCCATATcca                                  <  1:2912221/35‑1 (MQ=255)
  ggTGCCAGGAATATTCACCGGTTCGGCCATATcca                                  <  1:18554504/35‑1 (MQ=255)
  gccaatcatgctgatggcggaagcgcccatcccca                                  >  1:18756640‑M1/33‑35 (MQ=255)
  gccaatcatgctgatggcggaaacgcccatcccca                                  <  1:20292924‑M1/3‑1 (MQ=255)
  gccaatcatgctgatggcggaaacgcccatcccca                                  >  1:12564281‑M1/33‑35 (MQ=255)
  gccaatcatgctgatggcggaaacgcccatcccca                                  <  1:17236676‑M1/3‑1 (MQ=255)
   gTGCCAGGAATATTCCCCGGTTCGGCCATATccag                                 <  1:14565188/35‑1 (MQ=255)
   gTGCCAGGAATATTCACCGGTTCGGCCATATccag                                 >  1:17453720/1‑35 (MQ=255)
   gTGCCAGGAATATTCACCGGTTCGGCCATATccag                                 >  1:3216645/1‑35 (MQ=255)
   gTGCCAGGAATATTCACCGGTTCGGCCATATccag                                 <  1:2765174/35‑1 (MQ=255)
   ccaatcatgctgatggcggaaacgcccatccccag                                 >  1:4198800‑M1/32‑35 (MQ=255)
   ccaatcatgctgatggcggaaacgcccatccccag                                 >  1:15946762‑M1/32‑35 (MQ=255)
   ccaatcatgctgatggcggaaacgcccatccccag                                 <  1:12285082‑M1/4‑1 (MQ=255)
   ccaatcatgctgatggcggaaacgcccatccccag                                 >  1:19712449‑M1/32‑35 (MQ=255)
    tGCCAGGAATATTCACCGGTTCGGCCATATccagc                                >  1:9288244/1‑35 (MQ=255)
    tGCCAGGAATATTCACCGGTTCGGCCATATccagc                                >  1:18853106/1‑35 (MQ=255)
    tGCCAGGAATATTCACCGGTTCGGCCAAACccacc                                >  1:19079637/1‑33 (MQ=37)
    caatcatgctgatggcggaaacgcccctccccagc                                <  1:6805592‑M1/5‑1 (MQ=255)
    caatcatgctgatggcggaaacgcccatccccagc                                <  1:11434616‑M1/5‑1 (MQ=255)
    caatcatgctgatggcggaaacgcccatccccagc                                >  1:18003434‑M1/31‑35 (MQ=255)
    caatcatgctgatggcggaaacgcccatccccagc                                <  1:17939576‑M1/5‑1 (MQ=255)
    caatcatgctgatggcggaaacgcccatccccagc                                <  1:16760619‑M1/5‑1 (MQ=255)
     gCCAGGAATATTCACCGGTTCGGCCATATccagcc                               <  1:15005141/35‑1 (MQ=255)
     gCCAGGAATATTCACCGGTTCGGCCATATccagcc                               >  1:14550771/1‑35 (MQ=255)
     gCCAGGAATATTCACCGGTTCGGCCATATccagcc                               >  1:1655546/1‑35 (MQ=255)
     gCCAGGAATATTCACCGGTTCGGCCATATccagcc                               >  1:18195978/1‑35 (MQ=255)
      ccAGGAATATTCACCGGTTCGGCCATATccagcca                              >  1:5865447/1‑35 (MQ=255)
      ccAGGAATATTCACCGGTTCGGCCATATccagcca                              >  1:13423845/1‑35 (MQ=255)
       cAGGAATATTCACCGGTTCGGCCATATccagccag                             >  1:18454799/1‑35 (MQ=255)
       cAGGAATATTCACCGGTTCGGCCATATccagccag                             <  1:8804406/35‑1 (MQ=255)
       cAGGAATATTCACCGGTTCGGCCATATccagccag                             >  1:1379318/1‑35 (MQ=255)
        aGGAATATTCACCTGTTCGGCCATATCCAGCCAGt                            >  1:2413140/1‑35 (MQ=255)
        aGGAATATTCACCGGTTCGGCCATATCCAGCCAGt                            >  1:3317291/1‑35 (MQ=255)
        aGGAATATTCACCGGTTCGGCCATATCCAGCCAGt                            >  1:11742323/1‑35 (MQ=255)
        aGGAATATTCACCGGTTCGGCCATATCCAGCCAGt                            >  1:12084001/1‑35 (MQ=255)
        aGGAATATTCACCGGTTCGGCCATATCCAGCCAGt                            >  1:7915522/1‑35 (MQ=255)
        aGGAATATTCACCGGTTCGGCCATATCCAGCCAGt                            >  1:16874701/1‑35 (MQ=255)
        aGGAATATTCACCGGTTCGGCCATATCCAACCAGt                            >  1:20149896/1‑35 (MQ=255)
         ggAATATTCACCGGTTCGGCCATATCCAGCCCGTc                           >  1:3155485/1‑35 (MQ=255)
         ggAATATTCACCGGTTCGGCCATATCCAGCCAGTc                           >  1:9705907/1‑35 (MQ=255)
          gAATATTCACCGGTTCGGCCATATCCAGCCAGTCt                          >  1:7546433/1‑35 (MQ=255)
          gAATATTCACCGGTTCGGCCATATCCAGCCAGTCt                          >  1:18290154/1‑35 (MQ=255)
           aaTATTCACCGGTTCGGCCATATCCAGCCAGTCtt                         >  1:19582200/1‑35 (MQ=255)
           aaTATTCACCGGTTCGGCCATATCCAGCCAGTCtt                         >  1:13000931/1‑35 (MQ=255)
           aaTATTCACCGGTTCGGCCATATCCAGCCAGTCtt                         >  1:17871161/1‑35 (MQ=255)
            atatTCACCGGTTCGGCCATATCCAGCCAGTCTTc                        >  1:18488473/1‑35 (MQ=255)
              atTCACCGGTTCTGCCATATCCAGCCAGTCTTCCg                      >  1:17162584/1‑35 (MQ=255)
              atTCACCGGTTCGGCCATATCCAGCCAGTCTTcct                      >  1:11187861/1‑34 (MQ=255)
              atTCACCGGTTCGGCCATATCCAGCCAGTCTTCCg                      >  1:2061390/1‑35 (MQ=255)
               ttCACCGGTTCGGCCATATCCAGCCAGTCTTCCgg                     >  1:12867274/1‑35 (MQ=255)
               ttCACCGGTTCGGCCATATCCACCCAGTCTTCCgg                     >  1:4689301/1‑35 (MQ=255)
                 cACCGGTTCGGCCATATCCAGCCAGTCTTCCGTCt                   >  1:405276/1‑35 (MQ=255)
                 cACCGGTTCGGCCATATCCAGCCAGTCTTCCGGcg                   >  1:10859240/1‑34 (MQ=255)
                 cACCGGTTCGGCCATATCCAGCCAGTCTTCCGGCt                   >  1:14417946/1‑35 (MQ=255)
                    cGGTTCGGCCATATCCAGCCAGTCTTCCGGCTggg                >  1:6278543/1‑33 (MQ=255)
                        tCGGCCATACCCAGCCAGTCTTCCGGCTGTAGTcc            <  1:9453482/35‑1 (MQ=255)
                        ccccccatccCCAGCCAGTCTTCCGGCTGTAGTcc            >  1:17677823‑M1/11‑35 (MQ=255)
                         cgcccatccCCAGCCAGTCTTCCGGCTGTAGTCCt           >  1:9645660‑M1/10‑35 (MQ=255)
                         cGGCCATACCCAGCCAGTCTTCCGGCTGTAGTCCt           <  1:17317266/35‑1 (MQ=255)
                          gcccatacCCAGCCAGTCTTCCGGCTGTAGTCCTa          >  1:10097268‑M1/9‑35 (MQ=255)
                           gCCATATCCAGCCAGTCTTCCGGCTGGGGTCGTaa         >  1:14422370/1‑35 (MQ=25)
                           gCCATATCCAGCAAGTCTTCCGGCTGTAGTCCTaa         <  1:7719523/35‑1 (MQ=255)
                           gCCATACCCAGCCAGTCTTCCGGCTGTAGTCCTaa         <  1:12809056/35‑1 (MQ=255)
                           cccatacCCAGCCAGTCTTCCGGCTGTAGTCCTaa         >  1:1880972‑M1/8‑35 (MQ=255)
                             aatacCCAGCCAGTCTTCCGGCTGTAGTCCTAACa       >  1:12543565‑M1/6‑35 (MQ=255)
                              ttatCCAGCCAGTCTTCCGGCTGTAGTCCTAACag      <  1:16567190/34‑1 (MQ=255)
                              atatCCAGCCAGTCTTCCGGCTGGGGGCCTAAAag      >  1:10972468/1‑35 (MQ=16)
                              atatCCAGCAAGTCTTCCGGCTGTAGTCCTAACag      <  1:3200036/35‑1 (MQ=255)
                              atacCCAGCCAGTCTTCCGGCTGTAGTCCTAACag      >  1:15341984‑M1/5‑35 (MQ=255)
                               tccCCAGCCAGTCTTCCGGCTGTAGCCCTAACaga     >  1:20467125‑M1/4‑35 (MQ=255)
                               cccCCAGCCAGTCTTCCGGCTGTAGTCCTAACaga     >  1:3243865‑M1/4‑35 (MQ=255)
                                ccCCAGCCAGTCTTCCGGCTGTAGTCCTAACagag    >  1:2989299‑M1/3‑35 (MQ=255)
                                acCCAGCCAGTCTTCCGGCTGTAGTCCTAACagag    >  1:7136299‑M1/3‑35 (MQ=255)
                                acCCAGCCAGTCTTCCGGCTGTAGTCCTAACagag    >  1:3882443‑M1/3‑35 (MQ=255)
                                  ccagccagTCTTCCGGCTGGGGGGCTAACAGAACa  >  1:421777/1‑35 (MQ=12)
                                  CCAGCCAGTCTTCCGGCTGTAGTCCTAACAGAGCa  >  1:9641433‑M1/1‑35 (MQ=255)
                                  CCAGCCAGTCTTCCGGCTGTAGTCCTAACAGAGCa  >  1:6219612‑M1/1‑35 (MQ=255)
                                  |                                  
CTGGTGCCAGGAATATTCACCGGTTCGGCCATATCCAGCCAGTCTTCCGGCTGTAGTCCTAACAGAGCA  >  REL606/3476713‑3476781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.