New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 101794468 (0.660)11 (0.110) 7/48 NT 11.4% coding (1638/2601 nt) ycbS predicted outer membrane usher protein
?REL606 = 3424887 103 (1.000)intergenic (+105/‑21) nirD/nirC nitrite reductase small subunit/nitrite transporter

Only 100 of 125 total aligned reads displayed.

AAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATC  >  REL606/1017910‑1017978
                                  |                                  
aaaCTTACTGGCATACGGATCAACAGGATCGGCTa                                    >  1:10462076/1‑35 (MQ=255)
aaaCTTACTGGCATACGGATCAACAGGATCGGCTa                                    >  1:18014767/1‑35 (MQ=255)
aaaCTTACTGGCATACGGATCAACAGGATCGGCTa                                    <  1:15100560/35‑1 (MQ=255)
aaaCTTACTGGCATACGGATCAACAGGATCGGCTa                                    >  1:3990606/1‑35 (MQ=255)
 aaCTTACTGGCATACGGATCAACAGGATCGGCTAt                                   <  1:11653701/35‑1 (MQ=255)
 aaCTTACTGGCATACGGATCAACAGGATCGGCTAa                                   >  1:9637745‑M1/1‑34 (MQ=255)
 aaCTTACTGGCATACGGATCAACAGGATCGGCTAa                                   >  1:19656895‑M1/1‑34 (MQ=255)
 aaCTTACTCGCATACGGATCAACAGGATCGGCTAa                                   >  1:1787351‑M1/1‑34 (MQ=255)
  aCTTACTGGCATACGGATGAATAGGATCGGCTAtt                                  <  1:16418787/35‑1 (MQ=38)
  aCTTACTGGCATACGGATGAATAGGATCGGCTAtt                                  <  1:7608350/35‑1 (MQ=38)
  aCTTACTGGCATACGGATCAACAGGATCGGCTAtt                                  <  1:17142426/35‑1 (MQ=255)
  aCTTACTGGCATACGGATCAACAGGATCGGCTAtt                                  <  1:7917843/35‑1 (MQ=255)
   cTTACTGGCATACGGATCAACAGGATCGGCTAaaa                                 >  1:2107722‑M1/1‑32 (MQ=255)
   cTTACTGGCATACGGATCAACAGGATCGGCTATTa                                 <  1:19819950/35‑1 (MQ=255)
   cTTACTGGCATACGGATCAACAGGATCGGCTATTa                                 <  1:20591507/35‑1 (MQ=255)
    ttACTGGCATACGGATCAACAGGATCGGCTAaaaa                                >  1:15835781‑M1/1‑31 (MQ=255)
    ttACTGGCATACGGATCAACAGGATCGGCTATTAc                                <  1:680535/35‑1 (MQ=255)
    ttACTGGCATACGGATCAACAGGATCGGCTATTAc                                <  1:3539517/35‑1 (MQ=255)
     tACTGGCATACGGATCAACAGGATCGGCTAaaaaa                               >  1:1453564‑M1/1‑30 (MQ=255)
     tACTGGCATACGGATCAACAGGATCGGCTATTACa                               <  1:20331284/35‑1 (MQ=255)
     tACTGGCATACGGATCAACAGGATCGGCTATTACa                               <  1:1907456/35‑1 (MQ=255)
     tACTGGCATACGGATCAACAGGATCGGCTATTACa                               <  1:2671999/35‑1 (MQ=255)
     tACTGGCATACGGATCAACAGGATCGGCTATTACa                               <  1:15285431/35‑1 (MQ=255)
      aCTGGCATACGGATCAACAGGATCGGCTATTACAg                              <  1:12428231/35‑1 (MQ=255)
      aCTGGCATACGGATCAACAGGATCGGCTATTACAg                              <  1:2577381/35‑1 (MQ=255)
       cTGGCATACGGATCAACAGGATCGGCTATTACAGt                             <  1:17209096/35‑1 (MQ=255)
       cTGGCATACGGATCAACAGGATCGGCTATTACAGt                             <  1:1761303/35‑1 (MQ=255)
       cTGGCATACGGATCAACAGGATCGGCTATTACAGt                             <  1:14193102/35‑1 (MQ=255)
        tGGCATACGGATCAACAGGATCTGCTATTACAGtt                            >  1:19861454/1‑35 (MQ=255)
        tGGCATACGGATCAACAGGATCGGCTAaaaaaaaa                            >  1:13856257‑M1/1‑27 (MQ=255)
         ggCATACGGATCAACAGGATCGGCTATTACAGttt                           <  1:4664375/35‑1 (MQ=255)
         ggCATACGGATCAACAGGATCGGCTATTACAGttt                           <  1:8763606/35‑1 (MQ=255)
          gCATACGGATCAACAGGATCGGCTAaaaaaaaaaa                          >  1:7870814‑M1/1‑25 (MQ=255)
          gCATACGGATCAACAGGATCGGCTATTACAGTTTg                          <  1:16627503/35‑1 (MQ=255)
           cATACGGATCAACAGGATCGGCTATTACAGTTTgg                         <  1:1057984/35‑1 (MQ=255)
           cATACGGATCAACAGGATCGGCTATTACAGTTTgg                         <  1:13471576/35‑1 (MQ=255)
            aTACGGATCAACAGGATCTGCTATTACAGTTTGGc                        >  1:14255845/1‑35 (MQ=255)
            aTACGGATCAACAGGATCGGCTAaaaaaaaaaaaa                        >  1:18225007‑M1/1‑23 (MQ=255)
            aTACGGATCAACAGGATCGGCTAaaaaaaaaaaaa                        >  1:7997157‑M1/1‑23 (MQ=255)
             tACGGATCAACAGGATCGGCTATTACAGTTTGGCt                       <  1:19072109/35‑1 (MQ=255)
              aCGGATCAACAGGATCGGCTAaaaaaaaaaaaata                      >  1:8218042‑M1/1‑21 (MQ=255)
              aCGGATCAACAGGATCGGCTATTACAGTTTGGCTa                      <  1:11100213/35‑1 (MQ=255)
              aCGGATCAACAGGATCGGCTATTACAGTTTGGCTa                      <  1:5520688/35‑1 (MQ=255)
              aCGGATCAACAGGATCGGCTATTACAGTTTGGCTa                      <  1:8319030/35‑1 (MQ=255)
               cGGATCAACAGGATCGGCTAaaaaaaaaaaaataa                     >  1:12537491‑M1/1‑20 (MQ=255)
               cGGATCAACAGGATCGGCTATTACAGTTTGGCTac                     <  1:15903583/35‑1 (MQ=255)
               cGGATCAACAGGATCGGCTATTACAGTTTGGCTac                     <  1:3926316/35‑1 (MQ=255)
               cGGATCAACAGGATCGGCTATTACAGTTTGGCTac                     <  1:20499226/35‑1 (MQ=255)
               cGGATCAACAGGATCGGCTATTACAGTTTGGCTac                     <  1:20327037/35‑1 (MQ=255)
                ggATCAACAGGATCGGCTAaaaaaaaaaaaataaa                    >  1:6154874‑M1/1‑19 (MQ=255)
                ggATCAACAGGATCGGCTATTACAGTTTGGCTaca                    <  1:5829380/35‑1 (MQ=255)
                ggATCAACAGGATCGGCTATTACAGTTTGGCTaca                    <  1:904504/35‑1 (MQ=255)
                  aTCAACAGGATCGGCTATTACAGTTTGGCTacaac                  <  1:16415651/35‑1 (MQ=255)
                  aTCAACAGGATCGGCTATTACAGTTTGGCTacaac                  <  1:20290501/35‑1 (MQ=255)
                   tCAACAGGATCGGCTATTACAGTTTGGCTacaaca                 <  1:10699882/35‑1 (MQ=255)
                   tCAACAGGATCGGCTATTACAGTTTGGCTacaaca                 <  1:11777604/35‑1 (MQ=255)
                   tCAACAGGATCGGCTATTACAGTTTGGCTacaaca                 <  1:5366110/35‑1 (MQ=255)
                   tCAACAGGATCGGCTATTACAGTTTGGCTacaaca                 <  1:1576529/35‑1 (MQ=255)
                    cAACAGGATCGGCTATTACAGTTTGGCTACAacac                <  1:13828096/35‑1 (MQ=255)
                    cAACAGGATCGGCTATTACAGTTTGGCTACAacac                <  1:12840757/35‑1 (MQ=255)
                     aaCAGGATCGGCTATTACAGTTTGGCTACAACACg               <  1:13081631/35‑1 (MQ=255)
                     aaCAGGATCGGCTATTACAGTTTGGCTACAACACg               <  1:10891126/35‑1 (MQ=255)
                      aCAGGATCGGCTGTTACAGTTTGGCTACAACACGc              <  1:5472579/35‑1 (MQ=255)
                      aCAGGATCGGCTATTACAGTTTGGCTACAACACGc              <  1:7649172/35‑1 (MQ=255)
                      aCAGGATCGGCTATTACAGTTTGGCTACAACACGc              <  1:5661151/35‑1 (MQ=255)
                      aCAGGATCGGCTATTACAGTTTGGCTACAACACGc              <  1:3587305/35‑1 (MQ=255)
                      aCAGGATCGGCTATTACAGTTTGGCTACAACACGc              <  1:11370655/35‑1 (MQ=255)
                       cAGGATCGGCTATTACAGTTTGGCTACAACACGCa             <  1:9572045/35‑1 (MQ=255)
                       cAGGATCGGCTATTACAGTTTGGCTACAACACGCa             <  1:11569324/35‑1 (MQ=255)
                       cAGGATCGGCTATTACAGTTTGGCTACAACACGCa             <  1:12927581/35‑1 (MQ=255)
                        aGGATCGGCTATTACAGTTTGGCTACAACACGCaa            <  1:3095188/35‑1 (MQ=255)
                        aGGATCGGCTATTACAGTTTGGCTACAACACGCaa            <  1:949521/35‑1 (MQ=255)
                        aGGATCGGCTATTACAGTTTGGCTACAACACGCaa            <  1:11290117/35‑1 (MQ=255)
                        aGGATCGGCTATTACAGTTTGGCTACAACACGCaa            <  1:10675805/35‑1 (MQ=255)
                        aGGATCGGCTATTACAGTTTGGCTACAACACGCaa            <  1:9311324/35‑1 (MQ=255)
                        aGGATCGGCTATTACAGTTTGGCTACAACACGCaa            <  1:10349983/35‑1 (MQ=255)
                         ggATCGGCTATTACAGTTTGGCTACAACACGCaaa           <  1:15436424/35‑1 (MQ=255)
                         ggATCGGCTATTACAGTTTGGCTACAACACGCaaa           <  1:1337741/35‑1 (MQ=255)
                          gATCGGCTATTACAGTTTGGCTACAACACGCAAAt          <  1:2619641/35‑1 (MQ=255)
                          gATCGGCTATTACAGTTTGGCTACAACACGCAAAt          <  1:10387204/35‑1 (MQ=255)
                           ataggCTATTACAGTTTGGCTACAACACGCAAAtt         <  1:20421368/32‑1 (MQ=255)
                           aTCGGCTATTACAGTTTGGCTACAACACGCAAAtt         <  1:7421756/35‑1 (MQ=255)
                            tCGGCTATTACAGTTTGGCTACAACACGCAAATTa        <  1:10302755/35‑1 (MQ=255)
                            tCGGCTATTACAGTTTGGCTACAACACGCAAATTa        <  1:4722829/35‑1 (MQ=255)
                             cGGCTATTACAGTTTGGCTACAACACGCAAATTaa       <  1:11273464/35‑1 (MQ=255)
                             cGGCTATTACAGTTTGGCTACAACACGCAAATTaa       <  1:466182/35‑1 (MQ=255)
                              ggCTATTACAGTTTGGCTACAACACGCAAATTaaa      <  1:14473643/35‑1 (MQ=255)
                               gCTATTACAGTTTGGCTACAACACGCAAATTAAAg     >  1:18853922/1‑35 (MQ=255)
                               gCTATTACAGTTTGGCTACAACACGCAAATTAAAg     <  1:13676471/35‑1 (MQ=255)
                                cTATTACAGTTTGGCTACAACACGCAAATTAAAGa    >  1:4687138/1‑35 (MQ=255)
                                cTATTACAGTTTGGCTACAACACGCAAATTAAAGa    >  1:8835047/1‑35 (MQ=255)
                                 tATTACAGTTTGGCTACAACACGCAAATTAAAGAt   >  1:1665876/1‑35 (MQ=255)
                                 tATTACAGTTTGGCTACAACACGCAAATTAAAGAt   <  1:1787036/35‑1 (MQ=255)
                                 tATTACAGTTTGGCTACAACACGCAAATTAAAGAt   >  1:2061680/1‑35 (MQ=255)
                                 tATTACAGTTTGGCTACAACACGCAAATTAAAGAt   >  1:12072109/1‑35 (MQ=255)
                                 tATTACAGTTTGGCTACAACACGCAAATTAAAGAt   <  1:5966381/35‑1 (MQ=255)
                                  aTTACAGTTTGGCTACAACACGCAAATTAAAGATc  <  1:19014180/35‑1 (MQ=255)
                                  aTTACAGTTTGGCTACAACACGCAAATTAAAGATc  >  1:8484424/1‑35 (MQ=255)
                                  aTTACAGTTTGGCTACAACACGCAAATTAAAGATc  <  1:20046885/35‑1 (MQ=255)
                                  aTTACAGTTTGGCTACAACACGCAAATTAAAGATc  <  1:17489613/35‑1 (MQ=255)
                                  |                                  
AAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATC  >  REL606/1017910‑1017978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.