New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 31308524 (0.230)4 (0.040) 3/48 NT 6.4% coding (272/951 nt) yahI predicted carbamate kinase‑like protein
?REL606 = 661462 93 (0.910)intergenic (+13/+47) ybeV/hscC Hsc56 co‑chaperone of HscC/Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription

AACTGTGTGGCAGATACGCAGGGCGGCATCGGCTATCTGATCCAACAGGCGCTGAATAACCGGCTGGCG  >  REL606/313051‑313119
                                  |                                  
aaCTGTGTGCAGATACGCAGGGCGGCACCGGCTaa                                   >  1:15537914/1‑34 (MQ=25)
 aCTGTGTGGCAGATACGCAGGGCTGCATCGGCTAa                                   >  1:2686087‑M1/1‑34 (MQ=255)
 aCTGTGTGGCAGATACGCAGGGCGGCATCGGCTAa                                   >  1:5327017‑M1/1‑34 (MQ=255)
 aCTGTGTGGCAGATACGCAGGGCGGCATCGGCTAa                                   >  1:2946702‑M1/1‑34 (MQ=255)
  cTGTGTGACAGATACGCAGGGCGGCATCGGCTAaa                                  >  1:1811277‑M1/1‑33 (MQ=255)
   tgtgtgGCAGATACGCAGGGCGGCATCGGGTAaaa                                 >  1:14153899‑M1/1‑32 (MQ=255)
   tgtgtgGCAGATACGCAGGGCGGCATCGGCTAaca                                 >  1:6851068‑M1/1‑32 (MQ=255)
   tgtgtgGCAGATACGCAGGGCGGCATCGGCTAaaa                                 >  1:1373953‑M1/1‑32 (MQ=255)
      gtgGCAGATACGCAGGGCGGCATCGGCTAaaaaaa                              >  1:13624852‑M1/1‑29 (MQ=255)
       tgGCAGATACGCAGGGCGGCATCGGCTAaaaaatc                             >  1:4535506‑M1/1‑28 (MQ=255)
       tgGCAGATACGCAGGGCGGCATCGGCTAaaaaaac                             >  1:4488996‑M1/1‑28 (MQ=255)
        ggCAGATATGCAGGGCGGCATCGGCTAaaaaaaca                            >  1:674702‑M1/1‑27 (MQ=255)
        ggCAGATACGCAGGGCGGCATCGGCTAaaaaaacc                            >  1:5174974‑M1/1‑27 (MQ=255)
         acAGATGCGAAGGGCGGCATCGGCTATCTGATCCa                           <  1:15196281/34‑1 (MQ=37)
          cAGATACGCAGGGCGGCATCGGCTAAAAGATCCaa                          >  1:1597650/1‑35 (MQ=25)
            gATACGCAGGGCGGCATCGTCTATCTGATCCaaaa                        >  1:2331728/1‑33 (MQ=38)
              gccGCGGGGCGCCATCGGCTATCTGATCCAACAgg                      <  1:15744571/33‑1 (MQ=25)
                cGCGGGGCGGCATCGGCTATCTGATCCAACAGgcg                    <  1:13816263/35‑1 (MQ=255)
                cGCAGGGCGGCATCTGCTATCTGATCCAACAGgcg                    >  1:78051/1‑35 (MQ=255)
                    gggCGCCATCGGCCATCTGATCCAACAGGCGCTGa                <  1:19718052/35‑1 (MQ=37)
                        ggcATCGGCTATCTGATCCAACAGGCGCTGAATaa            <  1:18628579/35‑1 (MQ=255)
                        gccATAGGCTATCTGATCCAACAGGCGCTGAATaa            <  1:7632523/33‑1 (MQ=25)
                        cccATCGGCTATCTGATCCAACAGGCGCTGAATaa            <  1:17003768/33‑1 (MQ=255)
                        cccATCGGCTATCTGATCCAACAGGCGCTGAATaa            <  1:16074116/33‑1 (MQ=255)
                         ccATCGGCTATCTGATCCAACAGGCGCTGAATAAc           <  1:1612957/34‑1 (MQ=255)
                         ccATCGGCTATCTGATCCAACAGGCGCTGAATAAc           <  1:7125489/34‑1 (MQ=255)
                          cATCGGCTATCTGATCCACCAGGCGCTGAATAAcc          <  1:15484972/35‑1 (MQ=255)
                          cATCGGCTATCTGATCCAACAGGCGCTGAATAAcc          <  1:644247/35‑1 (MQ=255)
                          cATCGGCTATCTGATCCAACAGGCGCTGAATAAcc          <  1:10515507/35‑1 (MQ=255)
                          cATCGGCTATCTGATCCAACAGGCGCTGAATAAcc          <  1:3161799/35‑1 (MQ=255)
                          cATCGGCTATCTGATCCAACAGGCGCTGAATAAcc          <  1:16694527/35‑1 (MQ=255)
                          cATCGGCTATCTGATCCAACAGGCGCTGAATAAcc          <  1:19343848/35‑1 (MQ=255)
                          cATCGGCTATCTGATCCAACAGGAGCTGAATAAcc          <  1:5372140/35‑1 (MQ=255)
                           aTCGGCTATCTGATCCAACAGGCGCTGAATAACCg         <  1:6675858/35‑1 (MQ=255)
                           aTCGGCTATCTGATCCAACAGGCGCTGAATAACCg         <  1:17818851/35‑1 (MQ=255)
                            tCGGCTATCTGATCCAACAGGCGCTGAATAACCgg        <  1:11879226/35‑1 (MQ=255)
                            tCGGCTATCTGATCCAACAGGCGCTGAATAACCgg        <  1:9204405/35‑1 (MQ=255)
                              ggCTATCTGATCCAACAGGCGCTGAATAACCGGCt      <  1:5730032/35‑1 (MQ=255)
                              ggCTATCTGATCCAACAGGCGCTGAATAACCGGCt      >  1:9352727/1‑35 (MQ=255)
                              ggCTATCTGATCCAACAGGCGCTGAATAACCGGCt      <  1:11837114/35‑1 (MQ=255)
                              ggCTATCTGATCCAACAGGCGCTGAATAACCGGCt      >  1:12485231/1‑35 (MQ=255)
                              ggCTATCTGATCCAACAGGCGCTGAATAACCGGCt      >  1:18963064/1‑35 (MQ=255)
                              ggCTATCTGATCCAACAGGCGCTGAATAACCGGCt      >  1:17832113/1‑35 (MQ=255)
                              ggCTATCTGATCCAACAGGCGCTGAATAACCGGCt      >  1:17253897/1‑35 (MQ=255)
                               gCTATCTGATCCACCAGGCGCTGAATAACCGGCTg     <  1:2653031/35‑1 (MQ=255)
                               gCTATCTGATCCAACAGGCGCTGAATAACCGGCtt     >  1:4814908/1‑34 (MQ=255)
                               gCTATCTGATCCAACAGGCGCTGAATAACCGGCTg     <  1:7285085/35‑1 (MQ=255)
                                cTATCTGATCCAACAGGCGCTGAATAACCGGCTgg    <  1:1026182/35‑1 (MQ=255)
                                cTATCTGATCCAACAGGCGCTGAATAACCGGCTgg    >  1:8271638/1‑35 (MQ=255)
                                cTATCTGATCCAACAGGCGCTGAATAACCGGCTgg    <  1:15922791/35‑1 (MQ=255)
                                cTATCTGATCCAACAGGCGCTGAATAACCGGCTgg    >  1:17148557/1‑35 (MQ=255)
                                cTATCTGATCCAACAGGCGCTGAATAACCGGCTgg    <  1:19232405/35‑1 (MQ=255)
                                cTATCTGATCCAACAGGCGCTGAATAACCGGCTgg    >  1:20227681/1‑35 (MQ=255)
                                 tATCTGATCCAACAGGCGCTGAATAACCGGCTgg  >  1:5484410/1‑34 (MQ=255)
                                 tATCTGATCCAACAGGCGCTGAATAACCGGCTgg  >  1:3526/1‑34 (MQ=255)
                                 tATCTGATCCAACAGGCGCTGAATAACCGGCTgg  >  1:12291525/1‑34 (MQ=255)
                                 tATCTGATCCAACAGGCGCTGAATAACCGGCTGgc   <  1:635615/35‑1 (MQ=255)
                                 tATCTGATCCAACAGGCGCTGAATAACCGGCTGgc   >  1:15848661/1‑35 (MQ=255)
                                 tATCTGATCCAACAGGCGCTGAATAACCGGCTGgc   <  1:19402674/35‑1 (MQ=255)
                                 tATCTGATCCAACAGGCGCTGAATAACCGGCTGgc   <  1:20121528/35‑1 (MQ=255)
                                 tATCTGATCCAACAGGCGCTGAATAACCGGCTGgc   <  1:10703652/35‑1 (MQ=255)
                                  aTCTGGTCCAACAGGCGCTGAATAACCGGCTGgcg  <  1:17127597/35‑1 (MQ=255)
                                  aTCTGATCCAACAGGCGCTGAATAACCGGCTgggg  >  1:12763161/1‑33 (MQ=255)
                                  aTCTGATCCAACAGGCGCTGAATAACCGGCTgggg  >  1:2705585/1‑33 (MQ=255)
                                  |                                  
AACTGTGTGGCAGATACGCAGGGCGGCATCGGCTATCTGATCCAACAGGCGCTGAATAACCGGCTGGCG  >  REL606/313051‑313119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.