New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1760819 = | 58 (0.560) | 7 (0.080) | 5/42 | NT | 9.0% | coding (575/1701 nt) | ydiD | hypothetical protein |
? | REL606 | = 4434365 | 91 (1.010) | coding (58/1503 nt) | ytfR | predicted sugar transporter subunit: ATP‑binding component of ABC superfamily |
TGGGTCGTTATCGCCGTGGTCAGTGGGATATTGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1760855‑1760819 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT < REL606/4434365‑4434332 TGGGTCGTTATCGCCGTGGTCAGTGGGATATTGTC < 1:4580457/35‑1 TGGGTCGTTATCGCCGTGGTCAGTGGGATATTGTC < 1:2749269/35‑1 TGGGTCGTGATCGCCGTGGTCAGTGGGATATTGTC < 1:14653324/35‑1 GGGTCGTTATCGCCGTGGTCAGTTGGATATTGTCG > 1:6577011/1‑35 GGGTCGTTATCGCCGTGGTCAGTGGGATATTGTCG > 1:18458438/1‑35 GGGTCGTTATCGCCGTGGTCAGTGGGATATTGTCG < 1:6099105/35‑1 GGTCGTTATCGCCGTGGTCAGTGGGATATTGTCtg > 1:5286153/1‑33 GGTCGTTATCGCCGTGGTCAGTGGGATATTGTCGG > 1:16222397/1‑35 GGTCGTTATCGCCGTGGTCAGTGGGATATTGTCGG < 1:78427/35‑1 GTCGTTATCGCCGTGGTCAGTGGGATATTGTCGGG > 1:11464009/1‑35 GTCGTTATCGCCGTGGTCAGGGGGATATTGTCGGG > 1:761807/1‑35 CGTTATCGCCGTGGTCAGTGGGATATTGTCGGGGA > 1:5034415/1‑35 CGTTATCGCCGTGGTCAGTGGGATATTGTCGGGGA > 1:6767428/1‑35 GTTATCGCCGTGGTCAGTGGGATATTGTCGGGGga > 1:7715556/1‑33 TATCGCCGTGGTCAGTGGGATATTGTCGGGGAAAA > 1:2151917/1‑35 ATCGCCGTGGTCAGTGGGATATTGTCGGGGAAAAA > 1:6349113/1‑35 TCGCCGTGGTCAGTGGGATATTGTCGGCGAAAAAT > 1:17798209/1‑35 GCCGTGGTCAGTGGGATATTGTCGGGGAAAAATTT > 1:1950362/1‑35 GCCGTGGTCAGTGGGATATTGTCGGGGAAAAACTT > 1:2664451/1‑35 GCCGTGGTCAGTGGGATATTGTCGGGGAAAAACTT > 1:1493840/1‑35 CGTGGTCAGTGGGATATTGTCGGGGAAAAATTTAC > 1:9628592/1‑35 CGGGGAAAAATTTACTTAATCCTTCGGTTCGGAGG > 1:19087128/1‑35 CGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGG > 1:2217837/1‑35 CGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGG < 1:1218603/35‑1 GGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGA > 1:3784254/1‑35 GGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGA < 1:3102003/35‑1 GGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGA > 1:16572893/1‑35 GGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGA < 1:1289196/35‑1 GGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGA < 1:9098792/35‑1 GGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT < 1:18481861/35‑1 GGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT > 1:656950/1‑35 GGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT < 1:18337673/35‑1 GGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT < 1:15453095/35‑1 GGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT < 1:10054729/35‑1 TGGGTCGTTATCGCCGTGGTCAGTGGGATATTGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1760855‑1760819 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT < REL606/4434365‑4434332 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |