New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1539621 =78 (0.760)10 (0.120) 3/38 NT 16.0% coding (51/2400 nt) dos cAMP phosphodiesterase, heme‑regulated
?REL606 = 4445223 43 (0.530)coding (715/2139 nt) nrdD anaerobic ribonucleoside triphosphate reductase

Only 100 of 119 total aligned reads displayed.

CACTCTTCTGCGGTCTTGCGATGTTTGTTGTAGCTGGCGGTAACAAACGGCGCCAGCACTTCATCGATA  >  REL606/4445189‑4445257
                                  |                                  
cACTCTTCTGCGGTCTTGCGATGTTTGTTGTAGCt                                    <  1:7994829/35‑1 (MQ=255)
cACTCTTCTGCGGTCTTGCGATGTTTGTTGTAGCt                                    >  1:7797845/1‑35 (MQ=255)
cACTCTTCTGCGGTCTTGCGATGTTTGTTGTAGCt                                    >  1:19100145/1‑35 (MQ=255)
cACTCTTCTGAGGTCTTGCGATGTTTGTTGTAGCt                                    <  1:5572592/35‑1 (MQ=255)
 aCTCTTCTGCTGTCTTGCGATGTTTGTTGTAGCTg                                   <  1:19110677‑M2/35‑2 (MQ=255)
 aCTCTTCTGCGGTCTTGCGATGTTTGTTGTAGCTg                                   >  1:19559771‑M2/1‑34 (MQ=255)
 aCTCTTCTGCGGTCTTGCGATGTTTGTTGTAGCTg                                   <  1:3954295‑M2/35‑2 (MQ=255)
 aCTCTTCTGCGGTCTTGCGATGTTTGTTGTAGCTg                                   >  1:15745285‑M2/1‑34 (MQ=255)
 aCTCTTCTGCGGTCTTGCGATGTTTGTTGTAGCTg                                   >  1:7108504‑M2/1‑34 (MQ=255)
  ctctTCTGCGGTCTTGCGATGTTTGTTGTAGCTgg                                  >  1:17944585‑M2/1‑33 (MQ=255)
  ctctTCTGCGGTCTTGCGATGTTTGTTGTAGCTgg                                  >  1:12931509‑M2/1‑33 (MQ=255)
  ctctTCTGCGGTCTTGCGATGTTTGTTGTAGCTgg                                  >  1:17953339‑M2/1‑33 (MQ=255)
  ctctTCTGCGGTCTTGCGATGTTTGTTGTAGCTgg                                  >  1:17013775‑M2/1‑33 (MQ=255)
  ctctTCTGCGGTCTTGCGATGTTTGTTGTAGCAgg                                  >  1:6492547/1‑35 (MQ=255)
   tcttctGCGTTCTTGCGATGTTTGTTGTAGCTggc                                 <  1:14425745‑M2/35‑4 (MQ=255)
   tcttctGCGGTCTTGCGATGTTTGTTGTAGCTggc                                 <  1:15230261‑M2/35‑4 (MQ=255)
   tcttctGCGGTCTTGCGATGTTTGTTGTAGCTggc                                 >  1:8691362‑M2/1‑32 (MQ=255)
    cttctGCGGTCTTGCGATGTTTGTTGTAGCTggcg                                >  1:17884797‑M2/1‑31 (MQ=255)
    cttctGCGGTCTTGCGATGTTTGTTGTAGCTggcg                                >  1:16838807‑M2/1‑31 (MQ=255)
    cttctGCGGTCTTGCGATGTTTGTTGTAGCTggcg                                >  1:3948362‑M2/1‑31 (MQ=255)
     ttctGCGGTCTTGCGATGTTTGTTGTAGTTGGGgg                               >  1:14316959/1‑35 (MQ=38)
     ttctGCGGTCTTGCGATGTTTGTTGTAGCTggcgg                               >  1:13077347‑M2/1‑30 (MQ=255)
     ttctGCGGTCTTGCGATGTTTGTTGTAGCTggcgg                               >  1:7213603‑M2/1‑30 (MQ=255)
      tctGCGGTCTTGCGATGTTTGTTGTAGCTgggggg                              <  1:8239174‑M2/35‑7 (MQ=255)
      tctGCGGTCTTGCGATGTTTGTTGTAGCTggcggg                              <  1:16198704‑M2/35‑7 (MQ=255)
      tctGCGGTCTTGCGATGTTTGTTGTAGCTGGCGGt                              <  1:2630401/35‑1 (MQ=255)
       ctGCGGTCTTGCGATGTTTGTTGTAGCTggggggg                             <  1:11706906‑M2/35‑8 (MQ=255)
       ctGCGGTCTTGCGATGTTTGTTGTAGCTGGCGGTa                             <  1:2653147/35‑1 (MQ=255)
       ctGCGGTCTTGCGATGTTTGTTGTAGCTGGCGGTa                             <  1:6058165/35‑1 (MQ=255)
       ctGCGGTCTTGCGATGTTTGTTGTAGCTGGCGGTa                             <  1:7247359/35‑1 (MQ=255)
        tGCGGTCTTGCGATGTTTGTTGTAGCTggcgggga                            <  1:20335024‑M2/35‑9 (MQ=255)
        tGCGGTCTTGCGATGTTTGTTGTAGCTGGCGGTaa                            <  1:19542234/35‑1 (MQ=255)
        tGCGGTCTTGCGATGTTTGTTGTAGATGGCGGTaa                            <  1:10035865/35‑1 (MQ=255)
         gCGGTCTTGCGATGTTTGTTGTAGCTGGCGGTAAc                           <  1:20020830/35‑1 (MQ=255)
         gCGGTCTTGCGATGTTTGTTGTAGCTGGCGGTAAc                           <  1:20550616/35‑1 (MQ=255)
         gCGGTCTTGCGATGTTTGTTGTAGCTGGCGGTAAc                           <  1:11566729/35‑1 (MQ=255)
          cGGTCTTGCGATGTTTGTTGTAGCTggcggggaaa                          <  1:19161025‑M2/35‑11 (MQ=255)
          cGGTCTTGCGATGTTTGTTGTAGCTggcggggaaa                          <  1:3719947‑M2/35‑11 (MQ=255)
          cGGTCTTGCGATGTTTGTTGTAGCTGGCGGTAACa                          <  1:10950334/35‑1 (MQ=255)
          cGGTCTTGCGATGTTTGTTGTAGCTGGCGGTAACa                          <  1:19099510/35‑1 (MQ=255)
          cGGTCTTGCGATGTTTGTTGTAGCTGGCGGTAACa                          <  1:5757217/35‑1 (MQ=255)
           ggTCTTGCGATGTTTGTTGTAGCTggcggggaaca                         <  1:1219349‑M2/35‑12 (MQ=255)
           ggTCTTGCGATGTTTGTTGTAGCTggcggggaaaa                         <  1:410494‑M2/35‑12 (MQ=255)
           ggTCTTGCGATGTTTGTTGTAGCTggcggggaaaa                         <  1:6266175‑M2/35‑12 (MQ=255)
           ggTCTTGCGATGTTTGTTGTAGCTggcggggaaaa                         <  1:9391261‑M2/35‑12 (MQ=255)
           ggTCTTGCGATGTTTGTTGTAGCTGGCNGTAACaa                         <  1:16255715/35‑1 (MQ=255)
           ggTCTTGCGATGTTTGTTGTAGCTGGCGGTAACaa                         <  1:18654037/35‑1 (MQ=255)
           ggTCTTGCGATGTTTGTTGTAGCTGGCGGTAACaa                         <  1:18941488/35‑1 (MQ=255)
           ggTCTTGCGATGTTTGTTGTAGCTGGCGGTAACaa                         <  1:12936204/35‑1 (MQ=255)
           ggTCTTGCGATGTTTGTTGTAGCTGGCGGTAACaa                         <  1:6600020/35‑1 (MQ=255)
           ggTCTTGCGATGTTTGTTGTAGCTGGCGGTAACaa                         <  1:10440736/35‑1 (MQ=255)
            gTCTTGCGATGTTTGTTGTAGCTGGCGGTAACaaa                        <  1:6280944/35‑1 (MQ=255)
             tCTTGGGATGTTTGTTGTAGCTGGCGGTAACAAAc                       <  1:1646503/35‑1 (MQ=255)
             tCTTGCGATGTTTGTTGTAGCTggcggggaaaaaa                       <  1:2796183‑M2/35‑14 (MQ=255)
             tCTTGCGATGTTTGTTGTAGCTGGCGGTAACAAAc                       <  1:1745955/35‑1 (MQ=255)
             tCTTGCGATGTTTGTTGTAGCTGGCGGTAACAAAc                       <  1:4333926/35‑1 (MQ=255)
             tCTTGCGATGTTTGTTGTAGCTGGCGGTAACAAAc                       <  1:4859516/35‑1 (MQ=255)
              cTTGCGATGTTTGTTGTAGCTggcgggggaaaaag                      <  1:10754952‑M2/35‑15 (MQ=255)
              cTTGCGATGTTTGTTGTAGCTggcggggaaaaaaa                      <  1:2843361‑M2/35‑15 (MQ=255)
              cTTGCGATGTTTGTTGTAGCTGGCGGTAACAAACg                      <  1:4535273/35‑1 (MQ=255)
              cTTGCGATGTTTGTTGTAGCTGGCGGTAACAAACg                      <  1:11326649/35‑1 (MQ=255)
               ttGCGATGTTTGTTGTAGCTggcggggaaaaaaag                     <  1:9286767‑M2/35‑16 (MQ=255)
               ttGCGATGTTTGTTGTAGCTggcggggaaaaaaag                     <  1:17465494‑M2/35‑16 (MQ=255)
               ttGCGATGTTTGTTGTAGCTggcggggaaaaaaac                     <  1:10951186‑M2/35‑16 (MQ=255)
               ttGCGATGTTTGTTGTAGCTGGCTGGGACAAACgg                     >  1:5700779/1‑35 (MQ=25)
                tGCGATGTTTGTTGTAGCTggcggggaaaaaaagg                    <  1:14322535‑M2/35‑17 (MQ=255)
                 gCGATGTTTGTTGTAGCTGGCGGTAACAAACGgcg                   <  1:13384933/35‑1 (MQ=255)
                  cGATTTTTGTTGTAGCTGACGGTAACAAACGgcgc                  <  1:16398755/35‑1 (MQ=25)
                   gATGTTTGTTGTAGCTGGCGGTAACAAACGGCGcc                 <  1:436127/35‑1 (MQ=255)
                     tttttgttGTAGCTGGCGGTAACAAACGGCGCCAg               <  1:9127831/33‑1 (MQ=255)
                     tgtttgttGTAGCTGGCGGTAACAAACGGCGCCAg               <  1:16368360/35‑1 (MQ=255)
                      gtttgttGTAGCTGGCGGTAACAAACGGCGCCAGc              <  1:14065253/35‑1 (MQ=255)
                       tttgttGTAGCTGGCGGTAACAAACGGCGCCAGCa             <  1:1863540/35‑1 (MQ=255)
                        ttgttgTAGCTGGCGGTAACAAACGGCGCCAGCAc            <  1:7222655/35‑1 (MQ=255)
                         tgttgtAGCTGGCGGTAACAAACGGCGCCAGCACt           <  1:14469794/35‑1 (MQ=255)
                         tgttgtAGCTGGCGGTAACAAACGGCGCCAGCACt           <  1:6489262/35‑1 (MQ=255)
                          gttgtAGCTGGCGGTAACAAACGGCGCCAGCACtt          <  1:5143192/35‑1 (MQ=255)
                          gttgtAGCTGGCGGTAACAAACGGCGCCAGCACtt          <  1:2050215/35‑1 (MQ=255)
                          gttgtAGCTGGCGGTAACAAACGGCGCCAGCACtt          <  1:20492367/35‑1 (MQ=255)
                           ttgtAGCTGGCGGTAACAAACGGCGCCAGCACTTc         <  1:14813430/35‑1 (MQ=255)
                           ttgtAGCTGGCGGTAACAAACGGCGCCAGCACTTc         <  1:3025030/35‑1 (MQ=255)
                           ttgtACCTGGCGGTAACAAACGGCGCCAGCACTTc         <  1:17326703/35‑1 (MQ=255)
                            tgtAGCTGGCGGTAACAAACGGCGCCAGCACTTCa        <  1:7268088/35‑1 (MQ=255)
                            tgtAGCTGGCGGTAACAAACGGCGCCAGCACTTCa        <  1:847593/35‑1 (MQ=255)
                             gtAGCTGGCGGTAACAAACGGCGCCAGCACTTCAt       <  1:649927/35‑1 (MQ=255)
                             gtAGCTGGCGGTAACAAACGGCGCCAGCACTTCAt       <  1:4127047/35‑1 (MQ=255)
                             gtAGCTGGCGGTAACAAACGGCGCCAGCACTTCAt       <  1:14416432/35‑1 (MQ=255)
                             gtAGCTGGCGGTAACAAACGGCGCCAGCACTTCAt       <  1:10823874/35‑1 (MQ=255)
                              tAGCTGGCGGTAACAAACGGCTCCAGCACTTCATc      <  1:1131271/35‑1 (MQ=255)
                              tAGCTGGCGGTAACAAACGGCGCCAGCACTTCATc      <  1:9643496/35‑1 (MQ=255)
                              tAGCTGGCGGTAACAAACGGCGCCAGCACTTCATc      <  1:15643276/35‑1 (MQ=255)
                              tAGCTGGCGGTAACAAACGGCGCCAGCACTTCATc      <  1:13392202/35‑1 (MQ=255)
                               aGCTGGCGGTAACAAACGGCGCCAGCACTTCATCg     <  1:17775284/35‑1 (MQ=255)
                               aGCTGGCGGTAACAAACGGCGCCAGCACTTCATCg     <  1:5030068/35‑1 (MQ=255)
                               aGCTGGCGGTAACAAACGGCGCCAGCACTTCATCg     <  1:15234611/35‑1 (MQ=255)
                                gCTGGAGGTAACAAACGGCGCCAGCACTTCATCGa    <  1:7780492/35‑1 (MQ=255)
                                gCTGGAGGTAACAAACGGCGCCAGCACTTCATCGa    <  1:17092206/35‑1 (MQ=255)
                                 cTGGCGGTAACAAACGGCGCCAGCACTTCATCGAt   <  1:3087133/35‑1 (MQ=255)
                                  tGGCGGTAACAAACGGCGCCAGCACTTCATCGATa  <  1:16867341/35‑1 (MQ=255)
                                  tGGCGGTAACAAACGGCGCCAGCACTTCATCGATa  <  1:19599076/35‑1 (MQ=255)
                                  |                                  
CACTCTTCTGCGGTCTTGCGATGTTTGTTGTAGCTGGCGGTAACAAACGGCGCCAGCACTTCATCGATA  >  REL606/4445189‑4445257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.