New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 293737 = | 51 (0.500) | 8 (0.090) | 4/40 | NT | 11.3% | intergenic (+7/‑520) | ykgD/ykgE | predicted DNA‑binding transcriptional regulator/predicted oxidoreductase |
? | REL606 | = 1036069 | 83 (0.970) | intergenic (+41/+35) | ycbG/ompA | hypothetical protein/outer membrane protein A (3a;II*;G;d) |
Only 100 of 250 total aligned reads displayed.
AAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAAC > REL606/1036035‑1036103 | accgaggttgccacaatgcggctaaAAAAAAAAcc < 1:15610536‑M1/10‑1 (MQ=255) aaaGTCAGTTCAATTTACTAAAGGCAAAAAAAAcc > 1:18716610/1‑35 (MQ=255) aaaGTCAGTTCAATTTACTAAAGGCAAAAAAAAcc > 1:19091847/1‑35 (MQ=255) ccgaggttgccacaatgcggctaaAAAAAAAAccc < 1:18354127‑M1/11‑1 (MQ=255) aaGTCAGTTCAATTTACTAAAGGCAAAAAAAACCc < 1:15252871‑M2/35‑2 (MQ=255) aaGTCAGTTCAATTTACTAAAGGCAAAAAAAACCc < 1:15387150‑M2/35‑2 (MQ=255) cgaggttgccacaatgcggctaaAAAAAAAccccg < 1:11579557‑M1/12‑2 (MQ=255) cgaggttgccacaatgcggctaaAAAAAAAacccg < 1:5120000‑M1/12‑2 (MQ=255) cgaggttgccacaatgcggctaaAAAAAAAAcccc < 1:6126377‑M1/12‑1 (MQ=255) aGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC > 1:4581651‑M1/1‑35 (MQ=255) gaggttgccacaatgcggctaaAAAAAAAACCCCg < 1:5047690‑M1/13‑1 (MQ=255) gTCAGTTCAATTTACTAAAGGCAAAAAAAACCccg > 1:11359193‑M2/1‑32 (MQ=255) gTCAGTTCAATTTACTAAAGGCAAAAAAAACCccg > 1:8008890‑M2/1‑32 (MQ=255) tCAGTTCAATTTACTAAAGGCAAAAAAAACCccgc > 1:16955710‑M2/1‑31 (MQ=255) ggttgccacaatgcggctaaAAAAAAAACCCcgcg < 1:8441329‑M1/15‑2 (MQ=255) cAGTTCAATTTACTAAAGGCAAAAAAAACCCCgca > 1:181555/1‑35 (MQ=255) cAGTTCAATTTACTAAAGGCAAAAAAAACCCCgca > 1:14209868/1‑35 (MQ=255) ttgccacaatgcggctaaAAAAAAAACcccgccgg < 1:5371146‑M1/17‑4 (MQ=255) gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc < 1:8223495/35‑1 (MQ=255) gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc < 1:3761958/35‑1 (MQ=255) ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca < 1:16854840/35‑1 (MQ=255) ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca > 1:13688757/1‑35 (MQ=255) ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca < 1:7883378/35‑1 (MQ=255) ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca < 1:12200025/35‑1 (MQ=255) ttCAATTTACTAAAGGCAAAAAAAACCCCgcagca > 1:19199618/1‑35 (MQ=255) tCAATTTACTAAAGGCAAAAAAAACCCCGcagcag > 1:13855601/1‑35 (MQ=255) cAATTTACTAAAGGCAAAAAAAACCCCGCagcagc < 1:18289317/35‑1 (MQ=255) aaTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCg < 1:828849/35‑1 (MQ=255) aaTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCg > 1:17025183/1‑35 (MQ=255) aaTTTACTAAAGGCAAAAAAAACACCGCAGCAGCg < 1:803175/35‑1 (MQ=255) aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCgg > 1:2755253/1‑35 (MQ=255) aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCgg > 1:4703460/1‑35 (MQ=255) tttACTAAAGGCAAAAAAAACCCCGCAGCAGCggg > 1:4749420/1‑35 (MQ=255) tttACTAAAGGCAAAAAAAACCCCGCAGCAGCggg < 1:1309313/35‑1 (MQ=255) ttACTAAAGGCAAAAAAAACCCCGCAGCAGCgggg > 1:3375551/1‑35 (MQ=255) tACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGt > 1:14398195/1‑35 (MQ=255) aCTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGtt < 1:15888722/35‑1 (MQ=255) tAAAGGCAAAAAAATCCCCGCAGCAGCGGGGtttt < 1:20038400/35‑1 (MQ=255) tAAAGGCAAAAAAAACCCCGCAGCAGCGGGGtttt > 1:10047213/1‑35 (MQ=255) tAAAGGCAAAAAAAACCACGCAGCAGCGGGGtttt < 1:4393024/35‑1 (MQ=255) aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt < 1:18778050/35‑1 (MQ=255) aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt > 1:13526826/1‑35 (MQ=255) aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt > 1:13944937/1‑35 (MQ=255) aaaGGCAAAAAAAACCCCGCAGCAGCGGGGttttt > 1:20561049/1‑35 (MQ=255) aaGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTc > 1:14508070/1‑35 (MQ=255) aaGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTc < 1:2377649/35‑1 (MQ=255) ccgcaAAAAAAACCCCccagccataaagcgatgcc < 1:10323102‑M1/33‑20 (MQ=255) aGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCt < 1:3333535/35‑1 (MQ=255) gCAAAAAAAACCCCccagccataaagcgatgccgc < 1:5987452‑M1/35‑22 (MQ=255) cAAAAAAACCCCCagccgcgcggcgcaggtgaagt < 1:6571056‑M1/35‑23 (MQ=255) caaaaaaacCCCccagccataaagcgatgccgcgt < 1:9622703‑M1/34‑24 (MQ=255) caaaaaaacCCCccagccataaagcgatgccgcgt < 1:12711325‑M1/34‑24 (MQ=255) aaaaaaaaCCCCccagccataaagcgatgccgcgt < 1:5212776‑M1/35‑24 (MQ=255) aaaaaaaaCCCCagccgcgcggcgcaggtgaagtg < 1:8983058‑M1/35‑24 (MQ=255) aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa < 1:16044588/35‑1 (MQ=255) aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa > 1:10306646/1‑35 (MQ=255) aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCa < 1:9718080/35‑1 (MQ=255) aaaaaaaaCCCAGCAGCAGCGGGGTTTTTCTACCa < 1:8858472/35‑1 (MQ=255) agaaaaaccCCccagccataaagcgatgccgcgtt < 1:3556755‑M1/33‑25 (MQ=255) aaaacaaCCccgccagaaatcagggcaaagataat > 1:12502367‑M2/1‑9 (MQ=255) aaaaaacCCccgccagaaatcagggcaaagataat > 1:10405087‑M2/1‑9 (MQ=255) aaaaaaaCCccgccagaaatcagggcaaagataat > 1:19861292‑M2/1‑9 (MQ=255) aaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAg > 1:16757842/1‑35 (MQ=255) aaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAg > 1:9332347/1‑35 (MQ=255) aaaaaaTCCCccagccataaagcgatgccgcgttt < 1:5927032‑M1/35‑26 (MQ=255) aaaaaaCCCCccagccataaagcgatgccgcgttt < 1:13124348‑M1/35‑26 (MQ=255) aaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGAc < 1:19789947/35‑1 (MQ=255) aaaaTCCCccagccataaagcgatgccgcgtttga < 1:7001795‑M1/35‑28 (MQ=255) aaaaTCCCccagccataaagcgatgccgcgtttga < 1:9444665‑M1/35‑28 (MQ=255) aaaaCCCCccagccataaagcgatgccgcgtttga < 1:3697308‑M1/35‑28 (MQ=255) aaaaCCCCGCAGCAGCGTGGTTTTTCTACCAGACg > 1:13412543/1‑35 (MQ=255) aaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACg < 1:20482619/35‑1 (MQ=255) aaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACg < 1:20381588/35‑1 (MQ=255) aaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACg > 1:11463482/1‑35 (MQ=255) cacccccgccagaaatcagggcaaagataatccgc > 1:1473895‑M2/4‑5 (MQ=255) aaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACga < 1:221169/35‑1 (MQ=255) ccccccagccgcgcggcgcaggtgaagtgacgatt < 1:8599492‑M1/33‑30 (MQ=255) acccccccagccataaagcgatgccgcgtttgagc < 1:7579882‑M1/33‑30 (MQ=255) aatcccccagccataaagcgatgccgcgtttgagc < 1:10745308‑M1/32‑30 (MQ=255) aaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgag > 1:11066962/1‑35 (MQ=255) aaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgag < 1:6442533/35‑1 (MQ=255) aaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgag > 1:15450368/1‑35 (MQ=255) cccccGCAGCAGCGGGGTTTTTCTACCAGACgaga < 1:7440704/34‑1 (MQ=255) aCCCCGCAGCAGCGGGGTTTTTGTACCAGACgaga < 1:14477554/35‑1 (MQ=255) ccccgccagaaatcagggcaaagataatccgcatt > 1:17528658‑M2/1‑2 (MQ=255) ccccgccagaaatcagggcaaagataatccgcatt > 1:689295‑M2/1‑2 (MQ=255) ccccccagccataaagcgatgccgcgtttgagcgc < 1:16532210‑M1/35‑32 (MQ=255) ccccccagccataaagcgatgccgcgtttgagcgc < 1:3436941‑M1/35‑32 (MQ=255) ccccGCAGCAGCGGGGTTTTTCTACCAGACGAGaa > 1:15822593/1‑35 (MQ=255) ccccGCAGCAGCGGGGTTTTTCTACCAGACGAGaa > 1:16461958/1‑35 (MQ=255) ccccGCAGCAGCGGGGTTTTTCTACCAGACGAGaa < 1:17417374/35‑1 (MQ=255) cccgccagaaatcagggcaaagataatccgcattc > 1:7963738‑M2/1‑1 (MQ=255) cccccagccataaagcgatgccgcgtttgagcgca < 1:4147445‑M1/35‑33 (MQ=255) cccccagccataaagcgatgacgcgtttgagcgca < 1:18384630‑M1/35‑33 (MQ=255) cccagccgcgcggcgcaggtgaagtgacgattatc < 1:2951344‑M1/35‑33 (MQ=255) cccagccgcgcggcgcaggtgaagtgacgattatc < 1:15084078‑M1/35‑33 (MQ=255) cccGCAGCAGCGGGGTTTTTCTACCAGACGAGCAc > 1:4038242/1‑35 (MQ=255) cccGCAGCAGCGGGGTTTTTCTACCAGACGAGAAn < 1:6162860/35‑1 (MQ=255) cccGCAGCAGCGGGGTTTTTCTACCAGACGAGAAc > 1:9772126/1‑35 (MQ=255) cccGCAGCAGCGGGGTTTTTCTACCAGACGAGAAc > 1:9798144/1‑35 (MQ=255) | AAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAAC > REL606/1036035‑1036103 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |