New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3866966 | 86 (0.840) | 18 (0.180) | 8/46 | NT | 20.6% | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
? | REL606 | = 3887469 | 56 (0.570) | intergenic (‑105/‑47) | asnC/asnA | DNA‑binding transcriptional dual regulator/asparagine synthetase AsnA |
CATAGCAAGGACCTTTTTTATAAACAAAAAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3866932‑3866966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACACACATGCAATAATCATTCAATAAAAAGCC < REL606/3887469‑3887436 CATAGCAAGGACCTTTTTTATAAACAAAAAAACCC < 1:2251182/35‑1 CATAGCAAGGACCTTTTTTATAAACAAAAAAACCC < 1:19888760/35‑1 CATAGCAAGGACCTTTTTTATAAACAAAAAAACCC < 1:14964829/35‑1 ATAAAAAAAAAAACCCCGACACACATGCAATAATg < 1:7938921/35‑2 ATAAAAAAAAAAACCCCGACACACATGCAATAATC < 1:6271351/35‑1 aAAACAAAAAACCCCCGACACACATGCAATAATCA < 1:8085933/34‑1 aAAAAAAAAAAACCCCGACACACATGCAATAATCA < 1:17303108/34‑1 TAAACAAAAAAACCCCGACACACATGCAATAATCA < 1:1792088/35‑1 AAAAAAAAAAACCCCGACACACATGCAATAATCAT < 1:6724830/35‑1 aaaAAAAAAACCCCGACACACATGCAATAATCATT < 1:12332169/32‑1 aaaAAAAAAACCCCGACACACATGCAATAATCATT < 1:5507627/32‑1 ACAAAAAAACCCCGACACACATGCAATAATCATTC < 1:852554/35‑1 CAAAAAAACCCCGACACACATGCAATAATCATTCA < 1:16934027/35‑1 CAAAAAAACCCCGACACACATGCAATAATCATTCA < 1:10564395/35‑1 cAAAAAAACCCGACACACATGCAATAATCATTCAA < 1:6887899/34‑1 AAAAAAACCCCGACACACATGCAATAATCATTCAA < 1:12527847/35‑1 AAAAAAACCCCGACACACATGCAATAATCATTCAA < 1:5349149/35‑1 AAAAAACCCCGACACACATGCAATAATCATTCAAT < 1:17039061/35‑1 AAAAAACCCCGACACACATGCAATAATCATTCAAT < 1:3098488/35‑1 AAAAAACCCCGACACACATGCAATAATCATTCAAT < 1:4931110/35‑1 AAAAACCCCGACACACATGCAATAATCATTCAATA < 1:15281719/35‑1 AACCCCGACACACATGCAATAATCATTCAATAAAA < 1:2599450/35‑1 ACCCCGACACACATGCAATAATCATTCAATAAAAA < 1:10019203/35‑1 CCCGACACACATGCAATAATCATTCAATAAAAAGC < 1:1034588/35‑1 CCGACACACATGCAATAATCATTCAGTAAAAAGCC < 1:1265646/35‑1 CCGACACACATGCAATAATCATTCAATAAAAAGCC > 1:4120149/1‑35 CCGACACACATGCAATAATCATTCAATAAAAAGCC < 1:3360381/35‑1 CCGACACACATGCAATAATCATTCAATAAAAAGCC < 1:17180400/35‑1 CCGACACACATGCAATAATCATTCAATAAAAAGCC > 1:15502185/1‑35 CCGACACACATGCAATAATCATTCAATAAAAAGCC < 1:11942084/35‑1 CCGACACACATGCAATAATCATTCAATAAAAAGCC > 1:10710946/1‑35 CCGACACACATGCAATAATCATTCAATAAAAAGCC < 1:9934208/35‑1 CATAGCAAGGACCTTTTTTATAAACAAAAAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3866932‑3866966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACACACATGCAATAATCATTCAATAAAAAGCC < REL606/3887469‑3887436 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |