New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 187382 =110 (1.070)13 (0.150) 3/40 NT 14.9% coding (530/813 nt) yaeI predicted phosphatase
?REL606 3669194 = 57 (0.670)coding (1242/2031 nt) malS periplasmic alpha‑amylase precursor

Only 100 of 113 total aligned reads displayed.

TTTTGCCGGATATCAAAACCGAATCAACTACCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATGG  >  REL606/3669160‑3669228
                                  |                                  
ttttGCCGGATATCAAAACCGAATCAACTACCGCt                                    >  1:2606978/1‑35 (MQ=255)
 tttGCCGGATATCAAAACCGAATCAACTACCGCtt                                   >  1:10130533/1‑35 (MQ=255)
  ttGCCGGATATCAAAACCGAATCAACTACCGCTTc                                  >  1:7520140/1‑35 (MQ=255)
   tGCCGGATATCAAAACCGAATCAACTACCGCTTCt                                 >  1:7663281/1‑35 (MQ=255)
    gCCGGATATCAAAACCGAATCAACTACCGCTTCTg                                >  1:15249640/1‑35 (MQ=255)
    gCCGGATATCAAAACCGAATCAACTACCGCTTCTg                                >  1:5178841/1‑35 (MQ=255)
     ccGGATATCAAAACCGAATCAACTACCGCTTCTgg                               >  1:17370724/1‑35 (MQ=255)
     ccGGATATCAAAACCGAATCAACTACCGCTTCTgg                               >  1:16800222/1‑35 (MQ=255)
      cGGATATCAAAACCGAATCAACTACCGCTTCTGGt                              >  1:529767/1‑35 (MQ=255)
      cGGATATCAAAACCGAATCAACTACCGCTTCTGGt                              >  1:3110977/1‑35 (MQ=255)
      cGGATATCAAAACCGAATCAACTACCGCTTCTGGt                              >  1:19023826/1‑35 (MQ=255)
       ggATATCAAAACCGAATCAACTACCGCTTCTGGTc                             >  1:7487383/1‑35 (MQ=255)
       ggATATCAAAACCGAATCAACTACCGCTTCTGGTc                             >  1:2623769/1‑35 (MQ=255)
       ggATATCAAAACCGAATCAACTACCGCTTCTGGTc                             >  1:7988285/1‑35 (MQ=255)
       ggATATCAAAACCGAATCAACTACCGCTTCTGGTc                             >  1:19076571/1‑35 (MQ=255)
       ggATATCAAAACCGAATCAACTACCGCTTCTGGTc                             >  1:17866020/1‑35 (MQ=255)
        gATATCAAAACCGAATCAACTACCGCTTCTGGTCt                            >  1:3783634/1‑35 (MQ=255)
        gATATCAAAACCGAATCAACTACCGCTTCTGGTCt                            >  1:19900424/1‑35 (MQ=255)
        gATATCAAAACCGAATCAACTACCGCTTCTGGTCt                            >  1:9558343/1‑35 (MQ=255)
        gATATCAAAACCGAATCAACTACCGCTTCTGGTCt                            >  1:12423978/1‑35 (MQ=255)
          tatCAAAACCGAATCAACTACCGCTTCTGGTCTGc                          >  1:9172561/1‑35 (MQ=255)
          tatCAAAACCGAATCAACTACCGCTTCTGGTCTGc                          >  1:2719263/1‑35 (MQ=255)
           atCAAAACCGAATCAACTACCGCTTCTGGTCTGcc                         >  1:8627899/1‑35 (MQ=255)
           atCAAAACCGAATCAACTACCGCTTCTGGTCTGcc                         >  1:12337576/1‑35 (MQ=255)
           atCAAAACCGAATCAACTACCGCTTCTGGTCTGcc                         >  1:16514685/1‑35 (MQ=255)
            tCAAAACCGAATCAACTACCGCTTCTGGTCTGCCg                        >  1:4095211/1‑35 (MQ=255)
             cAAAACCGAATCAACTACCGCTTCTGGTCTGCCgg                       >  1:552031/1‑35 (MQ=255)
             cAAAACCGAATCAACTACCGCTTCTGGTCTGCCgg                       >  1:4927356/1‑35 (MQ=255)
               aaaCCGAATCAACTACCGCTTCTGGTCTGCCGgtg                     >  1:10322163/1‑35 (MQ=255)
               aaaCCGAATCAACTACCGCTTCTGGTCTGCCGgtg                     >  1:5125464/1‑35 (MQ=255)
                aaCCGAATCAACTACCGCTTCTGGTCTGCCGgtgt                    >  1:9074574/1‑35 (MQ=255)
                aaCCGAATCAACTACCGCTTCTGGTCTGCCGgtgt                    >  1:12405933/1‑35 (MQ=255)
                aaCCGAATCAACTACCGCTTCTGGTCTGCCGgtgt                    >  1:8015917/1‑35 (MQ=255)
                aaCCGAATCAACTACCGCTTCTGGTCTGCCGgtgt                    >  1:14293111/1‑35 (MQ=255)
                aaCCGAATCAACTACCGCTTCTGGTCTGCCGgtgt                    >  1:18390533/1‑35 (MQ=255)
                aaCCGAATCAACTACCGCTTCTGGTCTGCCGgtgt                    >  1:5888865/1‑35 (MQ=255)
                 cccaaaccacctcccgcTTCTGGTCTGCCGGTGtt                   <  1:19612017‑M2/18‑1 (MQ=255)
                 cccaaaccacctcccgcTTCTGGTCTGCCGGTGtt                   <  1:4046951‑M2/18‑1 (MQ=255)
                 cccaaaccacctcccgcTTCTGGTCTGCCGGTGtt                   <  1:5142193‑M2/18‑1 (MQ=255)
                 aCCGAATCAACTACCGCTTCTGGTCTGCCGGTGtt                   >  1:15788023/1‑35 (MQ=255)
                  ccGAATCAACTACCGCTTCTGGTCTGCCGGTGTTc                  >  1:3149411/1‑35 (MQ=255)
                  ccGAATCAACTACCGCTTCTGGTCTGCCGGTGTTc                  >  1:17425654/1‑35 (MQ=255)
                  ccGAATCAACTACCGCTTCTGGTCTGCCGGTGTTc                  >  1:14866584/1‑35 (MQ=255)
                   caaaccacctcccgcTTCTGGTCTGCCGGTGTTCt                 <  1:294200‑M2/20‑1 (MQ=255)
                   caaaccacctcccgcTTCTGGTCTGCCGGTGTTCt                 <  1:16125137‑M2/20‑1 (MQ=255)
                   cGAATCAACTACCGCTTCTGGTCTGCCGGTGTTCt                 >  1:11078903/1‑35 (MQ=255)
                   cGAATCAACTACCGCTTCTGGTCTGCCGGTGTTCt                 >  1:6151431/1‑35 (MQ=255)
                   cGAATCAACTACCGCTTCTGGTCTGCCGGTGTTCt                 >  1:18531428/1‑35 (MQ=255)
                   cGAATCAACTACCGCTTCTGGTCTGCCGGTGTTCt                 >  1:15149857/1‑35 (MQ=255)
                    gAATCAACTACCGCTTCTGGTCTGCCGGTGTTCta                >  1:10749924/1‑35 (MQ=255)
                    gAATCAACTACCGCTTCTGGTCTGCCGGTGTTCta                >  1:17992597/1‑35 (MQ=255)
                    gAATCAACTACCGCTTCTGGTCTGCCGGTGTTCta                >  1:9551810/1‑35 (MQ=255)
                    gAATCAACTACCGCTTCTGGTCTGCCGGTGTTCta                >  1:2583954/1‑35 (MQ=255)
                    aaaccacctcccgcTTCTGGTCTGCCGGTGTTCta                <  1:16852821‑M2/21‑1 (MQ=255)
                    aaaccacctcccgcTTCTGGTCTGCCGGTGTTCta                <  1:13339535‑M2/21‑1 (MQ=255)
                    aaacaacctcccgcTTCTGGTCTGCCGGTGTTCta                <  1:13435265‑M2/21‑1 (MQ=255)
                    aaaacacctcccgcTTCTGGTCTGCCGGTGTTCta                <  1:16264115‑M2/21‑1 (MQ=255)
                     aaccccctcccgcTTCTGGTCTGCCGGTGTTCtat               <  1:18360853‑M2/22‑1 (MQ=255)
                     aaccacctcccgcTTCTGGTCTGCCGGTGTTCtat               <  1:16290038‑M2/22‑1 (MQ=255)
                     aaccacctcccgcTTCTGGTCTGCCGGTGTTCtat               <  1:5416776‑M2/22‑1 (MQ=255)
                     aaTCAACTACCGCTTCTGGTCTGCCGGTGTTCtat               >  1:13008550/1‑35 (MQ=255)
                      aTCAACTACCGCTTCTGGTCTGCCGGTGTTCtata              >  1:2397335/1‑35 (MQ=255)
                       tCAACTACCGCTTCTGGTCTGCCGGTGTTCTATaa             >  1:18787585/1‑35 (MQ=255)
                       accaCTCCCGCTTCTGGTCTGCCGGTGTTCTATaa             <  1:3298427/32‑1 (MQ=37)
                        cccctcccgcTTCTGGTCTGCCGGTGTTCTATaaa            <  1:14821356‑M2/25‑1 (MQ=255)
                        cAACTACCGCTTCTGGTCTGCCGGTGTTCTATaaa            >  1:9503972/1‑35 (MQ=255)
                        cAACTACCGCTTCTGGTCTGCCGGTGTTCTATaaa            >  1:1089107/1‑35 (MQ=255)
                         accccccgcTTCTGGTCTGCCGGTGTTCTATaaaa           <  1:11961795‑M2/26‑1 (MQ=255)
                         aaCTACCGCTTCTGGTCTGCCGGTGTTCTATaaaa           >  1:13363440/1‑35 (MQ=255)
                         aaCTACCGCTTCTGGTCTGCCGGTGTTCTATaaaa           >  1:5989517/1‑35 (MQ=255)
                          cctcccgcTTCTGGTCTGCCGGTGTTCTATaaaaa          <  1:15528311‑M2/27‑1 (MQ=255)
                          aCTACCGCTTCTGGTCTGCCGGTGTTCTATaaaaa          >  1:14990735/1‑35 (MQ=255)
                          aCTACCGCTTCTGGTCTGCCGGTGTTCTATaaaaa          >  1:6924544/1‑35 (MQ=255)
                           cccccgcTTCTGGTCTGCCGGTGTTCTATAAAAAc         <  1:848831‑M2/28‑1 (MQ=255)
                           cTACCGCTTCTGGTCTGCCGGTGTTCTATAAAAAc         >  1:18258249/1‑35 (MQ=255)
                           cTACCGCTTCTGGTCTGCCGGTGTTCTATAAAAAc         >  1:5791729/1‑35 (MQ=255)
                            ccccgcTTCTGGTCTGCCGGTGTTCTATAAAAACa        <  1:5869020‑M2/29‑1 (MQ=255)
                            ccccgcTTCTGGTCTGCCGGTGTTCTATAAAAACa        <  1:20355427‑M2/29‑1 (MQ=255)
                            ccccgcTTCTGGTCTGCCGGTGTTCTATAAAAACa        <  1:3339635‑M2/29‑1 (MQ=255)
                             aCCGCTTCTGGTCTGCCGGTGTTCTATAAAAACaa       >  1:12003621/1‑35 (MQ=255)
                             aCCGCTTCTGGTCTGCCGGTGTTCTATAAAAACaa       >  1:18298937/1‑35 (MQ=255)
                             aCCGCTTCTGGTCTGCCGGTGTTCTATAAAAACaa       >  1:4658218/1‑35 (MQ=255)
                              ccgcTTCTGGTCTGCCGGTGTTGTATAAAAACaaa      >  1:5217732‑M2/5‑35 (MQ=255)
                              ccgcTTCTGGTCTGCCGGTGTTCTATAAAAACaaa      >  1:20128452‑M2/5‑35 (MQ=255)
                              ccgcTTCTGGTCTGCCGGTGTTCTATAAAAACaaa      <  1:14505979‑M2/31‑1 (MQ=255)
                              ccgcTTCTGGTCTGCCGGTGTTCTATAAAAACaaa      <  1:18250113‑M2/31‑1 (MQ=255)
                              ccgcTTCTGGTCTGCCGGTGTTCTATAAAAACaaa      >  1:3863970‑M2/5‑35 (MQ=255)
                              ccgcTTCTGGTCTGCCGGTGTTCTATAAAAACaaa      <  1:2737740‑M2/31‑1 (MQ=255)
                               cgcTTCTGGTCTGCCGGTGTTCTATAAAAACaaaa     >  1:19512655‑M2/4‑35 (MQ=255)
                               cgcTTCTGGTCTGCCGGTGTTCTATAAAAACaaaa     >  1:2318062‑M2/4‑35 (MQ=255)
                               cgcTTCTGGTCTGCCGGTGTTCTATAAAAACaaaa     >  1:16766596‑M2/4‑35 (MQ=255)
                               cgcTTCTGGTCTGCCGGTGTTCTATAAAAACaaaa     <  1:15223935‑M2/32‑1 (MQ=255)
                               cgcTTCTGGTCTGCCGGTGTTCTATAAAAACaaaa     >  1:16106640‑M2/4‑35 (MQ=255)
                                gcTTCTGGTCTGCCGGTGTTCTATAAAAACAAAAt    <  1:15778419‑M2/33‑1 (MQ=255)
                                gcTTCTGGTCTGCCGGTGTTCTATAAAAACAAAAt    <  1:8784817‑M2/33‑1 (MQ=255)
                                gcTTCTGGTCTGCCGGTGTTCTATAAAAACAAAAt    <  1:1617130‑M2/33‑1 (MQ=255)
                                 cTTCTGGTCTGCCTGTGTTCTATAAAAACAAAATg   >  1:9430612‑M2/2‑35 (MQ=255)
                                 cTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATg   >  1:13392840‑M2/2‑35 (MQ=255)
                                 cTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATg   <  1:12769935‑M2/34‑1 (MQ=255)
                                  ttCTGGTCTGCCGGTGTTCTATAAAAACAAAATgg  >  1:9320689/1‑35 (MQ=255)
                                  |                                  
TTTTGCCGGATATCAAAACCGAATCAACTACCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATGG  >  REL606/3669160‑3669228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.