New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1711816 = | 78 (0.760) | 21 (0.250) | 4/40 | NT | 22.6% | coding (188/816 nt) | ydhO | predicted lipoprotein |
? | REL606 | = 2450890 | 79 (0.920) | intergenic (‑182/+27) | yfeA/alaX | predicted diguanylate cyclase/tRNA‑Ala |
Only 100 of 190 total aligned reads displayed.
TTACAAAAGCGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAG > REL606/2450856‑2450924 | ttACAAAAGCGGCAAAAAGCAGAGACAAAAAAccc > 1:6748457/1‑35 (MQ=255) ttACAAAAGCGGCAAAAAGCAGAGACAAAAAAccc < 1:19125839/35‑1 (MQ=255) tACAAAAGCGGCAAAAAGCAGAGACAAAAAACCCc > 1:6971690‑M2/1‑34 (MQ=255) tACAAAAGCGGCAAAAAGCAGAGACAAAAAACCCc > 1:16089850‑M2/1‑34 (MQ=255) aCAAAAGCGGCAAAAAGCAGAGACAAAAAATCCcc > 1:18711594‑M2/1‑33 (MQ=255) aCAAAAGCGGCAAAAAGCAGAGACAAAAAACCCcc < 1:14192284‑M2/35‑3 (MQ=255) aCAAAAGCGGCAAAAAGCAGAGACAAAAAACCCcc < 1:7889722‑M2/35‑3 (MQ=255) aCAAAAGCGGCAAAAAGCAGAGACAAAAAACCCcc > 1:15887574‑M2/1‑33 (MQ=255) cAAAAGCGGCAAAAAGCAGAGACAAAAAACCCccg > 1:11292616‑M2/1‑32 (MQ=255) cAAAAGCGGCAAAAAGCAGAGACAAAAAACCCccg < 1:10861803‑M2/35‑4 (MQ=255) cAAAAGCGGCAAAAAGCAGAGACAAAAAACCCccg < 1:13148157‑M2/35‑4 (MQ=255) cAAAAGCGGCAAAAAGCAGAGACAAAAAACCCccg < 1:19781989‑M2/35‑4 (MQ=255) aaaaGCGGCAAAAAGCAGAGACAAAAAACCCccgc < 1:17651131‑M2/35‑5 (MQ=255) aaaaGCGGCAAAAAGCAGAGACAAAAAACCCccgc < 1:12485322‑M2/35‑5 (MQ=255) aaaaGCGGCAAAAAGCAGAGACAAAAAACCCccgc < 1:10420586‑M2/35‑5 (MQ=255) aaaGCGGCAAAAAGCAGAGACAAAAAACCCCCGCt > 1:12022343/1‑35 (MQ=255) aaGCGGCAAAAAGCAGAGACAAAAAACCCCCGCtt > 1:9395734/1‑35 (MQ=255) aaGCGGCAAAAAGCAGAGACAAAAAACCCCCGCtt < 1:5970273/35‑1 (MQ=255) aGCGGCAAAAAGCAGAGACAAAAAACCCCCGCttt > 1:9250702/1‑35 (MQ=255) aGCGGCAAAAAGCAGAGACAAAAAACCCCCGCttt > 1:6934531/1‑35 (MQ=255) gCGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTg < 1:14337571/35‑1 (MQ=255) gCGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTg < 1:13698287/35‑1 (MQ=255) gCGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTg > 1:7217097/1‑35 (MQ=255) cGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTGc > 1:5602478/1‑35 (MQ=255) cGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTGc > 1:16985967/1‑35 (MQ=255) cGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTGc < 1:13060955/35‑1 (MQ=255) cGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTGc > 1:19410699/1‑35 (MQ=255) cGGAAAAAAGCAGAGACAAAAAACCCCCGCTTTGc < 1:4218202/35‑1 (MQ=255) ggCAAAAAGCAGAGACAAAAAACCCCCGCTTTGCa < 1:14283237/35‑1 (MQ=255) ggCAAAAAGCAGAGACAAAAAACCCCCGCTTTGCa > 1:288164/1‑35 (MQ=255) gCAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAg < 1:1496496/35‑1 (MQ=255) gCAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAg < 1:8598949/35‑1 (MQ=255) gCAAAAAGCAGAGACAAAAAA‑CCCCGCTTTGCAGc < 1:2776378/35‑1 (MQ=25) cAAAAAGCAGAGACAAAAACCCCCCGCTTTGCAGc < 1:18931424/35‑1 (MQ=255) cAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAGc > 1:3074099/1‑35 (MQ=255) cAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAGc > 1:3741550/1‑35 (MQ=255) cAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAGc > 1:20316256/1‑35 (MQ=255) aaaaaGCAGAGACAAAAAACCCCCGCTTTGCAGCg > 1:14665209/1‑35 (MQ=255) aaaGCAGAGACAAAAAACCCCCGCTTTGCAGCGAg > 1:11687498/1‑35 (MQ=255) aaGCAGAGACAAAAAACCCCCGCTTTGCAGCGAgg < 1:18350490/35‑1 (MQ=255) aaGCAGAGACAAAAAACCCCCGCTTTGCAGCGAgg > 1:13921884/1‑35 (MQ=255) aGCAGAGACAAAAAACCCCCGCTTTGCAGCGAggg < 1:10114555/35‑1 (MQ=255) aGCAGAGACAAAAAACCCCCGCTTTGCAGCGAggg > 1:18877890/1‑35 (MQ=255) gCAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGt > 1:9618687/1‑35 (MQ=255) gCAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGt > 1:19565573/1‑35 (MQ=255) gCAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGt > 1:12267121/1‑35 (MQ=255) gCAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGt > 1:18686918/1‑35 (MQ=255) cAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGtt > 1:13089041/1‑35 (MQ=255) cAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGtt < 1:8925575/35‑1 (MQ=255) agagACAAAAAACCCCCGCTTTGCAGCGAGGGTTg > 1:3447565/1‑35 (MQ=255) agagACAAAAAACCCCCGCTTTGCAGCGAGGGTTg > 1:3873306/1‑35 (MQ=255) agaCAAAAAACCCCCGCTTTGCAGCGAGGGTTGGa < 1:14088420/35‑1 (MQ=255) agaCAAAAAACCCCCGCTTTGCAGCGAGGGTTGGa < 1:3177493/35‑1 (MQ=255) agaCAAAAAACCCCCGCTTTGCAGCGAGGGTTGGa > 1:535373/1‑35 (MQ=255) gaCAAAAAACCCCCGCTTTGCAGCGAGGGTTGGaa < 1:4522571/35‑1 (MQ=255) caaaaaaaacccccgccagtaaaagtacgaccaaa > 1:2713727‑M2/4‑12 (MQ=255) gaaaaaaaccCccgccagtaaaagtacgaccaaaa > 1:2390807‑M2/3‑11 (MQ=255) aaaaaaaaccCccgccagtaaaagtacgaccaaaa > 1:10109490‑M2/3‑11 (MQ=255) aaaaaaaaccCccgccagtaaaagtacgaccaaaa > 1:11946546‑M2/3‑11 (MQ=255) aCAAAAAACCCCCGCTTTGCAGCGAGGGTTGGaaa < 1:17456105/35‑1 (MQ=255) cAAAAAACCCccgccagtaaaagtacgaccaaaag > 1:3610100‑M2/1‑10 (MQ=255) agaaaaaccCccgccagtaaaagtacgaccaaaag > 1:18019015‑M2/3‑10 (MQ=255) aaaaaaacCCccgccagtaaaagtacgaccaaaag > 1:11446062‑M2/2‑10 (MQ=255) aaaaaaacCCccgccagtaaaagtacgaccaaaag > 1:17592448‑M2/2‑10 (MQ=255) aaaaaaCCCccgccagtaaaagtacgaccaaaagc > 1:2061880‑M2/1‑9 (MQ=255) aaaaaaCCCCCGCTTTGCAGCGAGGGTTGGAAAtt > 1:2188377/1‑35 (MQ=255) aaaaaaCCCCCGCTTTGCAGCGAGGGTTGGAAAtt < 1:16824792/35‑1 (MQ=255) aaaaaaCCCCCGCTTTGCAGCGAGGGTTGGAAAtt < 1:1822295/35‑1 (MQ=255) aaaaaaACCccgccagtaaaagtacgaccaaaagc > 1:8998147‑M2/1‑9 (MQ=255) aaaaaCCCCCGCTTTGCAGCGAGGGTTGGAAAttt < 1:1267766/35‑1 (MQ=255) aaaaaCCCCCGCTTTGCAGCGAGGGTTGGAAAttt > 1:11983784/1‑35 (MQ=255) aaaaaCCCCCGCTTTGCAGCGAGGGTTGGAAAttt > 1:2457922/1‑35 (MQ=255) aaaaCCCccgccagtaaaagtacgaccaaaagcaa > 1:19139342‑M2/1‑7 (MQ=255) aaaaCCCCCGCTTTGCAGCGAGGGTTGTAAATTtg > 1:18969422/1‑35 (MQ=255) aagcccccGCTTTGCAGCGAGGGTTGGAAATTtgg < 1:15970617/32‑1 (MQ=255) aaaCCCccgccagtaaaagtacgaccaaaagcaaa > 1:8098592‑M2/1‑6 (MQ=255) aaaCCCCCGCTTTGCAGCGAGGGTTGGAAATTtgg < 1:15434164/35‑1 (MQ=255) aaaACCccgccagtaaaagtacgaccaaaagcaaa > 1:10674026‑M2/1‑6 (MQ=255) acaccccgccagtaaaagtacgaccaaaagcaaaa > 1:2284617‑M2/4‑5 (MQ=255) aaCCCccgccagtaaaagtacgaccaaaagcaaaa > 1:9200977‑M2/1‑5 (MQ=255) aaCCCCCGCTTTGCAGCGAGGGTTGGAAATTtggt < 1:10829655/35‑1 (MQ=255) aaCCCACGCTTTGCAGCGAGGGTTGGAAATTtggt < 1:6399964/35‑1 (MQ=255) aaccccgccagtaaaagtacgaccaaaagcaaaac > 1:14439492‑M2/3‑4 (MQ=255) aaccccgccagtaaaagtacgaccaaaagcaaaac > 1:4896796‑M2/3‑4 (MQ=255) aCCCccgccagtaaaagtacgaccaaaagcaaaac > 1:14533073‑M2/1‑4 (MQ=255) aCCCCCGCTTTGCAGCGAGGGTTGGAAATTtggtg > 1:8284001/1‑35 (MQ=255) cccccgccagtaaaagtacgaccaaaagcaaaacc > 1:13388816‑M2/1‑3 (MQ=255) cccccGCTTTGCAGCGAGGGTTGGAAATTtggtgg < 1:13595089/35‑1 (MQ=255) cccccGCTTTGCAGCGAGGGTTGGAAATTtggtgg < 1:17432591/35‑1 (MQ=255) accccgccagtaaaagtacgaccaaaagcaaaacc > 1:15444038‑M2/2‑3 (MQ=255) ccccgccagtaagagtacgaccaaaagcaaaaccg > 1:3466270‑M2/1‑2 (MQ=255) ccccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGa < 1:7142345/35‑1 (MQ=255) ccccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGa > 1:7767661/1‑35 (MQ=255) ccccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGa < 1:1777207/35‑1 (MQ=255) ccccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGa > 1:3095303/1‑35 (MQ=255) ccccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGa < 1:9700376/35‑1 (MQ=255) cccGCTTTGCAGCGATGGTTGGAAATTTGGTGGAg > 1:2212087/1‑35 (MQ=255) cccGCTTTGCAGCGAGGGTTGGAAATTTGGTTGAg > 1:4952467/1‑35 (MQ=255) cccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAg > 1:19267651/1‑35 (MQ=255) cccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAg > 1:19989649/1‑35 (MQ=255) | TTACAAAAGCGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAG > REL606/2450856‑2450924 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |