New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 38998364 (0.620)8 (0.100) 5/36 NT 10.3% coding (575/1374 nt) proY predicted cryptic proline transporter
?REL606 = 3813056 92 (1.190)intergenic (‑137/‑797) ivbL/emrD ilvB operon leader peptide/multidrug efflux system protein

Only 100 of 151 total aligned reads displayed.

CCGACCGGTATTCATAACCTGTGGAGCAACGGCGGCTTCTTCAGTAACGGCTGGCTTGGCATGGTAATG  >  REL606/389949‑390017
                                  |                                  
ccgcccgTTATTCATAACCTGTGGAGCAAcggcgg                                    <  1:9317742/35‑1 (MQ=25)
ccaaccgTTATTCATAACCTGTGGAGCAAcggcgg                                    <  1:8545202/32‑1 (MQ=25)
  gaccgGTATTCATAACCTGTGGAGCAACGGCGGgt                                  >  1:2686075‑M1/1‑33 (MQ=255)
  gaccgGTATTCATAACCTGTGGAGCAACGGCGGgt                                  >  1:4231159‑M1/1‑33 (MQ=255)
  gaccgGTATTCATAACCTGTGGAGCAACGGCGGgt                                  >  1:6503178‑M1/1‑33 (MQ=255)
  gaccgGTATTCATAACCTGTGGAGCAACGGCGGgg                                  >  1:5652978‑M1/1‑33 (MQ=255)
  gaccgGTATTCATAACCTGTGGAGCAACGGCGGgc                                  >  1:19253509‑M1/1‑33 (MQ=255)
  gaccgGTATTCATAACCTGTGGAGCAACGGCGGct                                  >  1:14461628/1‑35 (MQ=255)
   ccgggTATTCATAACCTGTGGAGCAACGGCGGctt                                 <  1:12603325/32‑1 (MQ=255)
   accgGTATTCATAACCTGTGGAGCAACggcggcct                                 >  1:955301/1‑33 (MQ=255)
   accgGTATTCATAACCTGTGGAGCAACGGCGGggt                                 >  1:19327987‑M1/1‑32 (MQ=255)
    ccgGTATTCATAACCTGTGGAGCAACGGCGGggtc                                >  1:4493295‑M1/1‑31 (MQ=255)
    ccgGTATTCATAACCTGTGGAGCAACGGCGGgctt                                >  1:13568657‑M1/1‑31 (MQ=255)
    ccgGTATTCATAACCTGTGGAGCAACGGCGGcgtt                                >  1:5382434‑M1/1‑31 (MQ=255)
     cgGTATTCATAACCTGTGGAGCAACGGCGGgttct                               >  1:3856064/1‑35 (MQ=255)
      tttATTCATAACCTGTGGAGCAACGGCGGcttctt                              <  1:3104976/33‑1 (MQ=255)
      gttATTCATAACCTGTGGAGCAACGGCGGcttctt                              <  1:16552436/33‑1 (MQ=255)
      gttATTCATAACCTGTGGAGCAACGGCGGcttctt                              <  1:11064098/33‑1 (MQ=255)
      ggTATTCATAACCTGTGGAGCAACGGCGGcttctt                              <  1:4465265/35‑1 (MQ=255)
       ttATCCATAACCTGTGGAGCAACGGCGGCttcttc                             <  1:18542124/34‑1 (MQ=255)
       gTATTCATAACCTGTGGAGCAACGGCGGgtttttt                             >  1:18344343‑M1/1‑28 (MQ=255)
       gTATTCATAACCTGTGGAGCAACGGCGGgtttttt                             >  1:11090048‑M1/1‑28 (MQ=255)
       gTATTCATAACCTGTGGAGCAACGGCGGCttcttc                             >  1:6963522/1‑35 (MQ=255)
        tATTCATAACCTGTGGAGCAACGGCGGgttttttt                            >  1:3803041‑M1/1‑27 (MQ=255)
        tATTCATAACCTGTGGAGCAACGGCGGCTTCTTCa                            <  1:13797146/35‑1 (MQ=255)
         aTTCATAACCTGTGGAGCAACGGCGGggttttttg                           >  1:7720340‑M1/1‑26 (MQ=255)
          ttCATAACCTGTGGAGCAACGGCGGggttttttgt                          >  1:7550068‑M1/1‑25 (MQ=255)
          ttCATAACCTGTGGAGCAACGGCGGCTTTTTCCGt                          >  1:20066354/1‑35 (MQ=25)
          ttCATAACCTGTGGAGCAACGGCGGCTTCTTCAGt                          <  1:19766916/35‑1 (MQ=255)
           tCATAACCTGTGGAGCAACGGCGGCTTCTTCAGTa                         <  1:17770581/35‑1 (MQ=255)
            cATAACCTGTGGAGCAACGGCGGggtcttttgtta                        >  1:3453930‑M1/1‑23 (MQ=255)
            cATAACCTGTGGAGCAACGGCGGCTTCTTCAGTaa                        <  1:11908010/35‑1 (MQ=255)
            cATAACCTGTGGAGAAACGGCGGCTTCTTCAGTaa                        <  1:5920322/35‑1 (MQ=255)
             ttAACCTGTGGAGCAACGGCGGCTTCTTCAGTAAc                       <  1:19410492/34‑1 (MQ=255)
             aTAACCTGTGGAGCAACGGCGGCTTCTTCAGTAAc                       <  1:10968081/35‑1 (MQ=255)
             aTAACCTGTGGAGCAACGGCGGCTTCTTCAGTAAc                       <  1:7481430/35‑1 (MQ=255)
              tAACCTGTGGAGCAACGGCGGGTTTTTTAGTAACg                      >  1:18157040/1‑35 (MQ=21)
              tAACCTGTGGAGCAACGGCGGCTTCTTCAGTAACg                      <  1:15005585/35‑1 (MQ=255)
              tAACCTGTGGAGCAACGGCGGCTTCTTCAGTAACg                      <  1:13288940/35‑1 (MQ=255)
               aaCCTGTGGAGCAACGGCGGGTTTTTTAGTAAAgg                     >  1:630132/1‑35 (MQ=16)
               aaCCTGTGGAGCAACGGCGGCTTCTTCAGTAACgg                     <  1:8916939/35‑1 (MQ=255)
                aCCTGTGGAGCAACGGCGGCTTCTTCAGTAACggc                    <  1:13508955/35‑1 (MQ=255)
                 ccggtgGAGCAACGGCGGCTTCTTCAGTAACggct                   <  1:17408876/32‑1 (MQ=255)
                 ccTGTGGAGCACCGGCGGCTTCTTCAGTAACggct                   <  1:2661268/35‑1 (MQ=255)
                  cTGTGGAGCACCGGCGGCTTCTTCAGTAACggctg                  <  1:12325984/35‑1 (MQ=255)
                   ttgggAGCAACGGCGGCTTCTTCAGTAACggctgg                 <  1:17357370/32‑1 (MQ=255)
                   tgtgGAGCAACGGCGGCTTCTTCAGTAACggctgg                 <  1:2938497/35‑1 (MQ=255)
                     tgGAGCAACGGCGGCTTCTTCAGTAACggctggct               <  1:20300117/35‑1 (MQ=255)
                     tgGAGCAACGGCGGCTTCTTCAGTAACggctggct               <  1:14180694/35‑1 (MQ=255)
                      ggAGCAACGGCGGCTTCTTCAGTAACGGCTGGCtt              <  1:8446344/35‑1 (MQ=255)
                       gAGCAACGGCGGCTTCTTCAGTAACGGCTGGCTTg             <  1:13000744/35‑1 (MQ=255)
                       gAGCAACGGCGGCTTCTTCAGTAACGGCTGGCTTg             <  1:13866374/35‑1 (MQ=255)
                         gCAACGGCGGCTTCTTCAGTAACGGCTGGCTTGGc           <  1:8886691/35‑1 (MQ=255)
                         gCAACGGCGGCTTCTTCAGTAACGGCTGGCTTGGc           <  1:14069758/35‑1 (MQ=255)
                         acAACGGCGGCTTCTTCAGTAACGGCTGGCTTGGc           <  1:2077189/34‑1 (MQ=255)
                           aaCGGCGGCTTCTTCAGTAACGGCTGGCTTGGCAt         <  1:15960053/35‑1 (MQ=255)
                            aCGGCGGCTTCTTCAGTAACGGCTGGCTTGGCATg        <  1:19410524/35‑1 (MQ=255)
                            aCGGCGGCTTCTTCAGTAACGGCTGGCTTGGCATg        <  1:4087569/35‑1 (MQ=255)
                             cggcggggttttttgttatctgcaattcagtacaa       <  1:1800338‑M1/35‑30 (MQ=255)
                             cggcggggttttttgttatctgcaattaagtacaa       <  1:6496409‑M1/35‑30 (MQ=255)
                             cggcggCTTCTTCAGTAACGGCTGGCTTGGCATgg       <  1:15312563/35‑1 (MQ=255)
                             cggcggCTTCTTCAGTAACGGCTGGCTTGGCATgg       <  1:6835075/35‑1 (MQ=255)
                             cggcggCTTCTTCAGTAACGGCTGGCTTGGCATgg       <  1:7928782/35‑1 (MQ=255)
                              ggctgggttttttgttatctgcaattcagtacaaa      >  1:934885‑M1/1‑5 (MQ=255)
                              ggcggggttttttgttatctgcaattcagtacaaa      <  1:5496811‑M1/35‑31 (MQ=255)
                              ggcggggttttttgttatctgcaattcagtacaaa      >  1:1017486‑M1/1‑5 (MQ=255)
                              ggcggcTTCTTCAGTAACGGCTGGCTTGGCATGGt      <  1:15575089/35‑1 (MQ=255)
                               gcggggttttttgttatctgcaattcagtacaaaa     >  1:1141607‑M1/1‑4 (MQ=255)
                               gcggcTTCTTCAGTAACGGCTGGCTTGGCATGGTa     <  1:12573167/35‑1 (MQ=255)
                               gcggcTTCTTCAGTAACGGCTGGCTTGGCATGGTa     <  1:12363576/35‑1 (MQ=255)
                               gcggcTTCTTCAGTAACGGCTGGCTTGGCATGGTa     <  1:6712664/35‑1 (MQ=255)
                                cggggttttttgttatctgcaattcagtacaaaac    <  1:6794658‑M1/35‑33 (MQ=255)
                                cggggttttttgttatctgcaattcagtacaaaac    >  1:7947040‑M1/1‑3 (MQ=255)
                                cggggttttttgttatctgcaattcagtacaaaac    <  1:5359911‑M1/35‑33 (MQ=255)
                                cggggttttttgttatctgcaattcagtacaaaac    <  1:18659189‑M1/35‑33 (MQ=255)
                                cggcTTCTTCAGTAACGGCTGGCTTGGCATGGTaa    <  1:4549926/35‑1 (MQ=255)
                                cggcTTCTTCAGTAACGGCTGGCTTGGCATGGTaa    <  1:793682/35‑1 (MQ=255)
                                cggcTTCTTCAGTAACGGCTGGCTTGGCATGGTaa    <  1:18820024/35‑1 (MQ=255)
                                 ggggttttttgttatctgcaattcagtacaaaacg   >  1:16802864‑M1/1‑2 (MQ=255)
                                 ggggttttttgttatctgcaattcagtacaaaacg   >  1:16612700‑M1/1‑2 (MQ=255)
                                 ggggttttttgttatctgcaattcagtacaaaacg   >  1:10814122‑M1/1‑2 (MQ=255)
                                 ggggttttttgttatctgcaattcagtacaaaacg   <  1:8381026‑M1/35‑34 (MQ=255)
                                 ggggttttttgttatctgcaattcagtacaaaacg   >  1:1060720‑M1/1‑2 (MQ=255)
                                 ggggttttttgttatctgcaattcagtacaaaacg   >  1:18741165‑M1/1‑2 (MQ=255)
                                 ggggttttttgttatctgcaattcagtacaaaacg   >  1:2379911‑M1/1‑2 (MQ=255)
                                 ggggttttttgttatctgcaattcagtacaaaacg   >  1:3319778‑M1/1‑2 (MQ=255)
                                 ggggttttttgttatctgcaattcagtacaaaacg   >  1:483400‑M1/1‑2 (MQ=255)
                                 ggcTTCTTCAGTAACGGCTGGCTTGGCATGGTAAt   <  1:7153796/35‑1 (MQ=255)
                                 ggcTTCTTCAGTAACGGCTGGCTTGGCATGGTAAt   <  1:10684612/35‑1 (MQ=255)
                                 ggcTTCTTCAGTAACGGCTGGCTTGGCATGGTAAt   <  1:3741286/35‑1 (MQ=255)
                                  gggttttttgttatctgcaatttagtacaaaacgt  <  1:18465832‑M1/35‑35 (MQ=255)
                                  gggttttttgttatctgcaattcagtacaaaacgt  <  1:8422595‑M1/35‑35 (MQ=255)
                                  gggttttttgttatctgcaattcagtacaaaacgt  >  1:11032337‑M1/1‑1 (MQ=255)
                                  gggttttttgttatctgcaattcagtacaaaacgt  <  1:6670381‑M1/35‑35 (MQ=255)
                                  gggttttttgttatctgcaattcagtacaaaacgt  >  1:12836542‑M1/1‑1 (MQ=255)
                                  gggttttttgttatctgcaattcagtacaaaacgt  <  1:17485325‑M1/35‑35 (MQ=255)
                                  gggttttttgttatctgcaattcagtacaaaacgt  >  1:16709205‑M1/1‑1 (MQ=255)
                                  gggttttttgttatctgcaattcagtacaaaacgt  >  1:16082044‑M1/1‑1 (MQ=255)
                                  gcTTCTTCAGTAACGGCTGGCTTGGCATGGTAATg  <  1:12768819/35‑1 (MQ=255)
                                  gcTTCTTCAGTAACGGCTGGCTTGGCATGGTAATg  <  1:3828744/35‑1 (MQ=255)
                                  |                                  
CCGACCGGTATTCATAACCTGTGGAGCAACGGCGGCTTCTTCAGTAACGGCTGGCTTGGCATGGTAATG  >  REL606/389949‑390017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.