New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1286707 = | 97 (0.940) | 9 (0.110) | 4/38 | NT | 10.5% | intergenic (+31/‑152) | narI/ECB_01206 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein |
? | REL606 | = 1424360 | NA (NA) | coding (192/294 nt) | ECB_01344 | conserved hypothetical protein |
Only 100 of 247 total aligned reads displayed.
CTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAG > REL606/1286673‑1286741 | cgggcatggcaagcgaatgaatatgccgtggtggg < 1:4393926‑M1/1‑1 (MQ=255) cTAAGCGAATTTTAGTTCACATAGACCCTGCTTcg > 1:4691168/1‑35 (MQ=255) tAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg > 1:14300287/1‑35 (MQ=255) tAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg > 1:6517403/1‑35 (MQ=255) tAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg < 1:1383912/35‑1 (MQ=255) gtgcatggcaagcgaatgaatatgccgtggtgggg > 1:10905641‑M1/34‑35 (MQ=255) gggcatggcaagcgaatgaatatgccgttgtgggg < 1:1050444‑M1/2‑1 (MQ=255) gggcatggcaagcgaatgaatatgccgtggtgggg > 1:1072083‑M1/34‑35 (MQ=255) gggcatggcaagcgaatgaatatgccgtggtgggg < 1:3161972‑M1/2‑1 (MQ=255) gggcatggcaagcgaatgaatatgccgtggggggg < 1:5468912‑M1/2‑1 (MQ=255) cgagataggccgccagaaccagttgttgcgtaagg < 1:7478268‑M1/2‑1 (MQ=255) cgagataggccgccagaaccagttgttgcgtaagg > 1:15242602‑M1/34‑35 (MQ=255) cgagataggccgccagaaccagttgttgcgtaagg < 1:16854641‑M1/2‑1 (MQ=255) ggcatggcaagcgaatgaatatgccgtggtggggg < 1:15679843‑M1/3‑2 (MQ=255) ggcatggcaagcgaatgaatatgccgtggtggGGc > 1:8611063‑M1/33‑35 (MQ=255) ggcatggcaagcgaatgaatatgccgtggtggGGc < 1:12140398‑M1/3‑1 (MQ=255) ggcatggcaagcgaatgaatatgccgtgggggGGc < 1:2609840‑M1/3‑1 (MQ=255) gagataggccgccagaaccagttgttgcgtaaGGc < 1:9574813‑M1/3‑1 (MQ=255) aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc < 1:2011435/35‑1 (MQ=255) aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc > 1:16639513/1‑35 (MQ=255) aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc > 1:11615436/1‑35 (MQ=255) aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc < 1:19886127/35‑1 (MQ=255) aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc < 1:18958224/35‑1 (MQ=255) gcatggcaagcgaatgaatatgccgtggtgggggg < 1:20097113‑M1/4‑3 (MQ=255) gcatggcaagcgaatgaatatgccgtggtgggggg < 1:5377510‑M1/4‑3 (MQ=255) gcatggcaagcgaatgaatatgccgtggtggGGCg < 1:13694134‑M1/4‑1 (MQ=255) agataggccgccagaaccagttgttgcgtaaGGCg < 1:4089273‑M1/4‑1 (MQ=255) aGCGAATTTTAGTTCACATAGACCCTGCTTcggcg > 1:4423726/1‑35 (MQ=255) aGCGAATTTTAGTTCACATAGACCCTGCTTcggcg > 1:20294798/1‑35 (MQ=255) gataggccgccagaaccagttgttgcgtaaGGCgg < 1:15040646‑M1/5‑1 (MQ=255) gataggccgccagaaccagttgttgcgtaaGGCgg < 1:16554‑M1/5‑1 (MQ=255) gatagcccgccagaaccagttgttgcgtaaGGCgg > 1:4185554‑M1/31‑35 (MQ=255) gCGAATTTTAGTTCACATAGACCCTGCTTcggcgg < 1:2360787/35‑1 (MQ=255) catggcaagcgaatgaatatgccgtggtggGGCgg < 1:1341671‑M1/5‑1 (MQ=255) catggcaagcgaatgaatatgccgtgggggGGCgg < 1:5710931‑M1/5‑1 (MQ=255) cGAATTTTAGTTCACATAGACCCTGCTTCGGCggg < 1:10431335/35‑1 (MQ=255) tggcaagcgaatgaatatgccgtggtggGGCgggg < 1:6966333‑M1/7‑1 (MQ=255) taggccgccagaaccagttgttgcgtaaGGCgggg < 1:12547507‑M1/7‑1 (MQ=255) gAATTTTAGTTCACATAGACCCTGCTTCGGCgggg > 1:9641240/1‑35 (MQ=255) aggccgccagaaccagttgttgcgtaaGGCGGGGt < 1:10396277‑M1/8‑1 (MQ=255) aaTTTTAGTTCACATAGACCCTGCTTCGGCggggg > 1:15123269/1‑34 (MQ=255) aaTTTTAGTTCACATAGACCCTGCTTCGGCGGGGt < 1:18399391/35‑1 (MQ=255) aaTTTTAGTTCACATAGACCCTGCTTCGGCGGGGt < 1:20594066/35‑1 (MQ=255) ggccgccagaaccagttgttgcgtaaGGCGGGGtt < 1:6858154‑M1/9‑1 (MQ=255) gcaagcgaatgaatatgccgtggtggGGCGGGgtg < 1:3969776‑M1/9‑2 (MQ=255) gcaagcgaatgaatatgccgtggtggGGCGGGGtt < 1:14274986‑M1/9‑1 (MQ=255) aTTTTAGTTCACATAGACCCTGCTTCGGCtggggt > 1:10054941/1‑33 (MQ=37) ttttAGTTCACATAGACCCTGCTTCGGCGGGGgtt > 1:9029796/1‑35 (MQ=255) caagcgaatgaatatgccgtggtggggcgggggtt < 1:8449417‑M1/10‑4 (MQ=255) tttAGTTCACATAGACCCTGCTTCGGCGGGGgttt > 1:7194217/1‑35 (MQ=255) tttAGTTCACATAGACCCTGCTTCGGCGGGGgttt > 1:6024420/1‑35 (MQ=255) ttAGTTCACATAGACCCTGCTTCGGCGGGGttttt < 1:13335840/35‑1 (MQ=255) ggcgaatgaatatgccgtggtggGGCGGGGgtttt < 1:8935846‑M1/12‑1 (MQ=255) cgccagaaccagttgttgcgtaaGGCGGGTttttt < 1:1097387‑M1/12‑1 (MQ=255) cgccagaaccagttgttgcgtaaGGCGGGGttttt < 1:5177674‑M1/12‑1 (MQ=255) tAGTTCACATAGACCCTGCTTCGGCTGGGgttttt > 1:8291697/1‑35 (MQ=37) gccagaaccagttgttgcgtaaGGCGGGttttttc < 1:15758154‑M1/13‑2 (MQ=255) gccagaaccagttgttgcgtaaGGCGGGttttttc < 1:2862930‑M1/13‑2 (MQ=255) cgaatgaatatgccgtggtggGGCGGGGttttttt < 1:16936278‑M1/14‑1 (MQ=255) aGTTCACATAGACCCTGCTTCGGCGGGGgtttttt > 1:15609287/1‑35 (MQ=255) aGTTCACATAGACCCTGCTTCGGCGGGGgtttttt > 1:15974824/1‑35 (MQ=255) gTTCACATAGACCCTGCTTCTGCGGGGTTTTTTTa > 1:7554772/1‑35 (MQ=255) gTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTa < 1:926473/35‑1 (MQ=255) gTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTa < 1:4974358/35‑1 (MQ=255) cagaaccagttgttgcgtaaGGCGgggtttttctt < 1:10246583‑M1/15‑4 (MQ=255) ttCACATAGACCCTGCTTCGGCGGGGgtttttttt > 1:3722827/1‑33 (MQ=25) ttCACATAGACCCTGCTTCGGCGGGGTTTTTTTAt < 1:17706267/35‑1 (MQ=255) tccacaTAGACCCTGCTTCGGCGGGGGTTTTTTAt > 1:576444/3‑35 (MQ=25) tCACATAGACCCTGCTTCGGCGGGGTTTTTTTATg < 1:15448597/35‑1 (MQ=255) tCACATAGACCCTGCTTCGGCGGGGTTTTTTTATg < 1:18500327/35‑1 (MQ=255) tCACATAGACCCTGCTTCGGCGGGGGTTTTTTATg > 1:7217307/1‑35 (MQ=255) tCACATAGACCCTGCTTCGGCGGGGGTTTTTTATg > 1:9741248/1‑35 (MQ=255) cacaTAGACCCTGCTTCGGCGGGGTTTTTTTATgg < 1:2246910/35‑1 (MQ=255) cacaTAGACCCTGCTTCGGCGGGGTTTTTTTATgg < 1:17634604/35‑1 (MQ=255) aaccagttgttgcgtaaGGCGGGGTTTTtttacgg < 1:12388186‑M1/18‑4 (MQ=255) acaTAGACCCTGCTTCGGCGGGGTTTTTTTATggg < 1:10291870/35‑1 (MQ=255) acaTAGACCCTGCTTCGGCGGGGTTTTTTTATggg < 1:1386699/35‑1 (MQ=255) aTAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCa < 1:13014682/35‑1 (MQ=255) aTAGACCCTGCTTCGGCGGGGGTTTTTTTTTGGCa > 1:16071287/1‑35 (MQ=18) aTAGACCCTGCTTCGGCGGGGGTTTTTTTTTGGCa > 1:18048641/1‑35 (MQ=18) tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc < 1:19211715/35‑1 (MQ=255) tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc < 1:19426065/35‑1 (MQ=255) tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc < 1:5983221/35‑1 (MQ=255) tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc < 1:8998668/35‑1 (MQ=255) tAGACCCTGCTTCGGCGGGGGTTTTTTTTGGGCAc > 1:4860414/1‑35 (MQ=25) tAGACACTGCTTCGGCGGGGTTTTTTTATGGGCAc < 1:13241447/35‑1 (MQ=255) aGACCCTGCTTCGGCGGGGGTTTTTTATTGGGACg > 1:15991613/1‑35 (MQ=21) ccccTGCTTCGGCGGGGTTTTTTTATGGGCACGGt < 1:247416/34‑1 (MQ=255) aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGt < 1:4888581/35‑1 (MQ=255) aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGt < 1:11407610/35‑1 (MQ=255) aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGt < 1:11921031/35‑1 (MQ=255) aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGt < 1:6663389/35‑1 (MQ=255) aCCCTGCTTCGGCGGGGGTTTTTTATGGGCACggg > 1:8027447/1‑34 (MQ=255) aCCCTGCTTCGGCGGGGGTTTTTTATGGGCACggg > 1:16968563/1‑34 (MQ=255) cccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTg < 1:1734396/35‑1 (MQ=255) ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGc < 1:7701132/35‑1 (MQ=255) tGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCgg < 1:18172816/35‑1 (MQ=255) gCTTCGGCGGTGTTTTTTTATGGGCACGGTGCggg < 1:1968444/35‑1 (MQ=255) ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGt < 1:14939372/35‑1 (MQ=255) ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGt < 1:8237601/35‑1 (MQ=255) | CTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAG > REL606/1286673‑1286741 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |