New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3331631 = | 78 (0.760) | 5 (0.070) | 4/34 | NT | 9.4% | coding (257/975 nt) | yhdH | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding |
? | REL606 | = 4600665 | 41 (0.560) | coding (36/606 nt) | osmY | periplasmic protein |
CGCCAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3331671‑3331631 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagCAGAGTTTTCGAAATCTTCAGT < REL606/4600665‑4600644 CGCCAGCCCACCCCAGTGGTTTTCACCAACGCCCC > 1:11926932/1‑35 CGCCAGCCCACCCCAGTGGTTTTCACCAACGCCCC < 1:5869772/35‑1 CGCCAGCCCACCCCAGTGGTTTTCACCAACGCCCC > 1:13036214/1‑35 CCAGCCCACCCCAGTGGTTTTCACCAACGCCCCAG > 1:4098032/1‑35 CCAGCCCACCCCAGTGGTTTTCACCAACGCCCCAG < 1:11765225/35‑1 CCAGCCCACCCCAGTGGTTTTCACCAACGCCCCAG < 1:15811124/35‑1 CCAGCCCACCCCAGTGGTTTTCACCAACGCCCCAG < 1:1823465/35‑1 CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC > 1:3351380/1‑35 CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC < 1:5158062/35‑1 CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC > 1:2728488/1‑35 CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC > 1:20208599/1‑35 CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC < 1:19231315/35‑1 CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC > 1:1688172/1‑35 CAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGC > 1:16230035/1‑35 AGCCCACCCCAGTGGTTTTCACCAACGCCCCAGCC < 1:574439/35‑1 AGCCCACCCCAGTGGTTTTCACCAACGCCCCAGCC < 1:12109629/35‑1 GCCCACCCCAGTGGTTTTCACCAACGCCCCAGCCA < 1:10695000/35‑1 GCCCACCCCAGTGGTTTTCACCAACGCCCCAGCCA > 1:4501450/1‑35 GCCCACCCCAGTGGTTTTCACCAACGCCCCAGCCA < 1:10676942/35‑1 CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAt > 1:5761904/1‑34 CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG < 1:5863603/35‑1 CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG < 1:8281061/35‑1 CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG < 1:3450504/35‑1 CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG < 1:20151774/35‑1 CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG > 1:12166031/1‑35 CCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG > 1:10073672/1‑35 ACCGACGCCCCAGCCAGCAGAGTTTTCGAAATCTT < 1:2358331/35‑1 aCAACACCCCAGCCAGCAGAGTTTTCGAAATCTTC < 1:2733801/34‑1 CCAACCCCCCAGCCAGCAGAGTTTTCGAAATCTTC < 1:7307249/35‑1 CAACCCCCCAGCCAGCAGAGTTTTCGAAATCTTCA < 1:7458817/35‑1 AACCCCCCAGCCAGCAGAGTTTTCGAAATCTTCAG < 1:2823997/35‑1 ccaCCCCAGCCAGCAGAGTTTTCGAAATCTTCAGT < 1:13832297/32‑1 CGCCAGCCCACCCCAGTGGTTTTCACCAACGCCCCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3331671‑3331631 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagCAGAGTTTTCGAAATCTTCAGT < REL606/4600665‑4600644 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |