New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 558248 = | 18 (0.180) | 6 (0.090) | 4/32 | NT | 19.7% | coding (185/294 nt) | ECB_00516 | conserved hypothetical protein |
? | REL606 | 3001100 = | 37 (0.540) | coding (1537/2847 nt) | flu | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
Only 100 of 113 total aligned reads displayed.
CTCCCCGGTAACGTTCCATAAACTGACCACCACGAACCTCACCGGCCAGGGCGGCACCATCAATATGCG > REL606/3001066‑3001134 | cTCCCCGGTAACGTTCCATAAACTGACCACCACGa > 1:14818137/1‑35 (MQ=255) cTCCCCGGTAACGTTCCATAAACTGACCACCACGa > 1:12077466/1‑35 (MQ=255) tCCCCGGTAACGTTCCATAAACTGACCACCACGaa > 1:16492844/1‑35 (MQ=255) tCCCCGGTAACGTTCCATAAACTGACCACCACGaa > 1:17740758/1‑35 (MQ=255) cccGGTAACGTTCCATAAACTGACCACCACGAAcc > 1:16341773/1‑35 (MQ=255) ccGGTAACGTTCCATAAACTGACCACCACGAACCt > 1:14744651/1‑35 (MQ=255) ccGGTAACGTTCCATAAACTGACCACCACGAACCt > 1:17317935/1‑35 (MQ=255) cGGTAACGTTCCATAAACTGACCACCACGAACCTc > 1:3657033/1‑35 (MQ=255) cGGTAACGTTCCATAAACTGACCACCACGAACCTc > 1:16982495/1‑35 (MQ=255) cGGTAACGTTCCATAAACTGACCACCACGAACCTc > 1:8797762/1‑35 (MQ=255) gTAACGTTCCATAAACTGACCACCACGAACCTCAc > 1:5423611/1‑35 (MQ=255) tAACGTTCCATAAACTGACCACCACGAACCTCAcc > 1:17902577/1‑35 (MQ=255) tAACGTTCCATAAACTGACCACCACGAACCTCAcc > 1:13355656/1‑35 (MQ=255) tAACGTTCCAAAAACTGCCCACCACGAACCTCAcc < 1:7768449/35‑1 (MQ=37) aaCGTTCCATAAACTGACCACCACGAACCTCACCg > 1:1232267/1‑35 (MQ=255) aaCGTTCCATAAACTGACCACCACGAACCTCACCg > 1:15991677/1‑35 (MQ=255) aaCGTTCCATAAACTGACCACCACGAACCTCACCg > 1:6087118/1‑35 (MQ=255) aCGTTCCATAAACTGACCACCACGAACCTCACCgg > 1:19282953/1‑35 (MQ=255) aCGTTCCATAAACTGACCACCACGAACCTCACCgg > 1:265035/1‑35 (MQ=255) aCGTTCCATAAACTGACCACCACGAACCTCACCgg > 1:16744464/1‑35 (MQ=255) aCGTTCCATAAACTGACCACCACGAACCTCACCgg > 1:1106792/1‑35 (MQ=255) cGTTCCATAAACTGACCACCACGAACCTCACCGGc > 1:10795748/1‑35 (MQ=255) cGTTCCATAAACTGACCACCACGAACCTCACCGGc > 1:11832571/1‑35 (MQ=255) gTTCCATAAACTGACCACCACGAACCTCACCGGcc > 1:457745/1‑35 (MQ=255) gTTCCATAAACTGACCACCACGAACCTCACCGGcc > 1:13584160/1‑35 (MQ=255) ttCCATAAACTGACCACCACGAACCTCACCGGCCa > 1:19060300/1‑35 (MQ=255) ttCCATAAACTGACCACCACGAACCTCACCGGCCa > 1:14181162/1‑35 (MQ=255) ttCCATAAACTGACCACCACGAACCTCACCGGCCa > 1:18549380/1‑35 (MQ=255) ttCCATAAACTGACCACCACGAACCTCACCGGCCa > 1:4836500/1‑35 (MQ=255) tCCATAAACTGACCACCACGAACCTCACCTGCCAg > 1:11331865/1‑35 (MQ=255) tCCATAAACTGACCACCACGAACCTCACCGGCCAg > 1:14530670/1‑35 (MQ=255) ccATAAACTGACCACCACGAACCTCACCGGCCAgg > 1:17029098/1‑35 (MQ=255) caaaaaccgccccaccacgAACCTCACCGGCCAgg < 1:6977799‑M2/16‑1 (MQ=255) caaaacctccccaccacgAACCTCACCGGCCAggg < 1:6061973‑M2/17‑1 (MQ=255) caaaaacgccccaccacgAACCTCACCGGCCAggg < 1:15085725‑M2/17‑1 (MQ=255) caaaaaCTGCCCACCACGAACCTCACCGGCCAggg < 1:8443833/32‑1 (MQ=37) cATAAACTGACCACCACGAACCTCACCGGCCAggg > 1:1296088/1‑35 (MQ=255) aaaaacgccccaccacgAACCTCACCGGCCAGggc < 1:1951617‑M2/18‑1 (MQ=255) aaaaaCTCCCCACCACGAACCTCACCGGCCAGggc < 1:13450850/33‑1 (MQ=37) tAAACTGACCACCACGAACCTCACCGGCCAGggcg > 1:3782629/1‑35 (MQ=255) aacctccccaccacgAACCTCACCGGCCAGggcgg < 1:4845574‑M2/20‑1 (MQ=255) aaacgccccaccacgAACCTCACCGGCCAGggcgg < 1:12257482‑M2/20‑1 (MQ=255) aaaCTGACCACCACGAACCTCACCGGCCAGggcgg > 1:562561/1‑35 (MQ=255) aaaCTGACCACCACGAACCTCACCGGCCAGggcgg > 1:7737980/1‑35 (MQ=255) aaCTGCCCACCACGAACCTCACCGGCCAGggcggc < 1:18984821/35‑1 (MQ=255) aaCTGCCCACCACGAACCTCACCGGCCAGggcggc < 1:7787740/35‑1 (MQ=255) aaCTGACCACCACGAACCTCACCGGCCAGggcggc > 1:10311667/1‑35 (MQ=255) aaCTGACCACCACCAACCTCACCGGCCAGggcggc > 1:13462557/1‑35 (MQ=255) actccccaccacgAACCTCACCGGCCAGGGCGGCa < 1:5399816‑M2/22‑1 (MQ=255) aCTGACCACCACGAACCTCACCGGCCAGggcgggc > 1:3863966/1‑33 (MQ=255) aCTGACCACCACGAACCTCACCGGCCAGGGCGGCa > 1:6828994/1‑35 (MQ=255) ccgcccaccacgAACCTCACCGGCCAGGGCGGCAc < 1:2694370‑M2/23‑1 (MQ=255) tacccaccaCGAACCTAACCGGCCAGGGCGGCAcc < 1:15006587/32‑1 (MQ=37) tGACCACCACGAACCTCACCTGCCAGGGCGGCAcc > 1:15816177/1‑35 (MQ=255) tGACCACCACGAACCTCACCGGCCAGGGCGGCAcc > 1:10499598/1‑35 (MQ=255) gACCACCACGAACCTCACCGGCCAGGGCGGCACCa > 1:10966158/1‑35 (MQ=255) gACCACCACGAACCTCACCGGCCAGGGCGGCACCa > 1:3228978/1‑35 (MQ=255) gACCACCACGAACCTCACCGGCCAGGGCGGCACCa > 1:17866543/1‑35 (MQ=255) gACCACCACGAACCTCACCGGCCAGGGCGGCACCa > 1:18979205/1‑35 (MQ=255) ccccaccacgAACCTCACCGGCCAGGGCGGCACCa < 1:11020646‑M2/25‑1 (MQ=255) accaccACGAACCTCACCGGCCAGGGCGGCACCAt > 1:12154269/1‑35 (MQ=255) ccaccacgAACCTCACCGGCCAGGGCGGCACCATc > 1:12920923‑M2/9‑35 (MQ=255) ccaccacgAACCTCACCGGCCAGGGCGGCACCATc > 1:18939566‑M2/9‑35 (MQ=255) ccaccacgAACCTCACCGGCCAGGGCGGCACCATc < 1:3791107‑M2/27‑1 (MQ=255) caccacgAACCTCACCGGCCAGGGCGGCACCATCa < 1:8260426‑M2/28‑1 (MQ=255) caccacgAACCTCACCGGCCAGGGCGGCACCATCa < 1:4214927‑M2/28‑1 (MQ=255) caccacgAACCTCACCGGCCAGGGCGGCACCATCa < 1:412958‑M2/28‑1 (MQ=255) caccacgAACCTCACCGGCCAGGGCGGCACCATCa > 1:3885779‑M2/8‑35 (MQ=255) accacgAACCTCACCGGCCAGGGCGGCACCATCaa > 1:9861478‑M2/7‑35 (MQ=255) accacgAACCTCACCGGCCAGGGCGGCACCATCaa < 1:12744747‑M2/29‑1 (MQ=255) accacgAACCTCACCGGCCAGGGCGGCACCATCaa < 1:197425‑M2/29‑1 (MQ=255) ccacgAACCTCACCGGCCAGGGCGGCACCATCAat > 1:2879783‑M2/6‑35 (MQ=255) ccacgAACCTCACCGGCCAGGGCGGCACCATCAat < 1:1454657‑M2/30‑1 (MQ=255) ccacgAACCTCACCGGCCAGGGCGGCACCATCAat > 1:629482‑M2/6‑35 (MQ=255) ccacgAACCTCACCGGCCAGGGCGGCACCATCAat < 1:15315935‑M2/30‑1 (MQ=255) cacgAACCTCACCGGCCAGGGCGGCACCATCAata > 1:13376837‑M2/5‑35 (MQ=255) cacgAACCTCACCGGCCAGGGCGGCACCATCAata > 1:14039183‑M2/5‑35 (MQ=255) cacgAACCTCACCGGCCAGGGCGGCACCATCAata > 1:8114716‑M2/5‑35 (MQ=255) cacgAACCTCACCGGCCAGGGCGGCACCATCAata > 1:6059037‑M2/5‑35 (MQ=255) cacgAACCTCACCGGCCAGGGCGGCACCATCAata > 1:2570527‑M2/5‑35 (MQ=255) cacgAACCTCACCGGCCAGGGCGGCACCATCAata > 1:2736372‑M2/5‑35 (MQ=255) cacgAACCTCACCGGCCAGGGCGGCACCATCAata > 1:11838075‑M2/5‑35 (MQ=255) cacgAACCTCACCGGCCAGGGCGGCACCATCAata > 1:3290798‑M2/5‑35 (MQ=255) aacgAACCTCACCGGCCAGGGCGGCACCATCAata < 1:12566762‑M2/31‑1 (MQ=255) acgAACCTCACCGGCCAGGGCGGCACCATCAatat < 1:20171631‑M2/32‑1 (MQ=255) acgAACCTCACCGGCCAGGGCGGCACCATCAatat > 1:12338401‑M2/4‑35 (MQ=255) acgAACCTCACCGGCCAGGGCGGCACCATCAatat > 1:2190732‑M2/4‑35 (MQ=255) acgAACCTCACCGGCCAGGGCGGCACCATCAatat > 1:15227045‑M2/4‑35 (MQ=255) acgAACCTCACCGGCCAGGGCGGCACCATCAatat > 1:8667352‑M2/4‑35 (MQ=255) acgAACCTCACCGGCCAGGGCGGCACCATCAatat < 1:8018887‑M2/32‑1 (MQ=255) cgAACCTCACCGGCCAGGGCGGCACCATCAATATg > 1:9392529‑M2/3‑35 (MQ=255) cgAACCTCACCGGCCAGGGCGGCACCATCAATATg < 1:14778570‑M2/33‑1 (MQ=255) cgAACCTCACCGGCCAGGGCGGCACCATCAATATg > 1:6303750‑M2/3‑35 (MQ=255) cgAACCTCACCGGCCAGGGCGGCACCATCAATATg > 1:20534432‑M2/3‑35 (MQ=255) cgAACCTCACCGGCCAGGGCGGCACCATCAATATg > 1:3115348‑M2/3‑35 (MQ=255) gAACCTCACCGGCCAGGGCGGCACCATCAATATGc > 1:4659178‑M2/2‑35 (MQ=255) gAACCTCACCGGCCAGGGCGGCACCATCAATATGc < 1:4079007‑M2/34‑1 (MQ=255) gAACCTCACCGGCCAGGGCGGCACCATCAATATGc > 1:1002043‑M2/2‑35 (MQ=255) aaCCTCACCGGCCAGGGCGGCACCATCAATATGCg > 1:9512718/1‑35 (MQ=255) aaCCTCACCGGACAGGGCGGCACCATCAATATGCg < 1:9124366/35‑1 (MQ=255) | CTCCCCGGTAACGTTCCATAAACTGACCACCACGAACCTCACCGGCCAGGGCGGCACCATCAATATGCG > REL606/3001066‑3001134 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |