New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 449635 =24 (0.230)5 (0.070) 3/34 NT 11.1% coding (1050/1551 nt) ylaB conserved inner membrane protein
?REL606 = 3144237 63 (0.870)coding (314/1746 nt) dnaG DNA primase

Only 100 of 108 total aligned reads displayed.

GATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTA  >  REL606/449601‑449669
                                  |                                  
gATTGATCGAAATATGCTGCTGTGGATTCTGACGc                                    >  1:1692910/1‑35 (MQ=255)
gATTGATCGAAATATGCTGCTGTGGATGCTGACGc                                    <  1:9120469/35‑1 (MQ=255)
 tcttgaagtgccatttgaagcaggcagcggcccca                                   >  1:18721836‑M1/34‑35 (MQ=255)
 tcttgaagtgccatttgaagcaggcagcggcccca                                   >  1:11458835‑M1/34‑35 (MQ=255)
 tattgaagtgccatttgaagcaggcagcggcccca                                   >  1:19549700‑M1/34‑35 (MQ=255)
 aTTGATCGAAATATGCTTCTGTGGATGGTGGCGCa                                   >  1:15225404/1‑35 (MQ=25)
 aTTGATCGAAATATGCTGCTGTGGATGTTGACGCa                                   <  1:6027606/35‑1 (MQ=255)
 aTTGATCGAAATATGCTGCTGTGGATGGGGACGCa                                   >  1:17542933/1‑35 (MQ=37)
 aTTGATCGAAATATGCTGCTGTGGATGCTGACGCa                                   <  1:2011225/35‑1 (MQ=255)
 aTTGATCGAAATATGCTGCTGTGGATGCTGACGCa                                   <  1:384896/35‑1 (MQ=255)
 aTTGATCGAAATATGCTGCTGTGGATGCTGACGCa                                   <  1:11053160/35‑1 (MQ=255)
 aTTGATCGAAATATGCTGCTGTGGATGCTGACGCa                                   <  1:6018089/35‑1 (MQ=255)
 aTTGATCGAAATATGCTGCTGTGGATGCTGACGCa                                   <  1:11305985/35‑1 (MQ=255)
 aTTGATCGAAATATGCTGCTGTGGATGCTGACGCa                                   <  1:3999243/35‑1 (MQ=255)
 aTTGATCGAAATATGCTGCTGTGGATGCTGACGCa                                   <  1:19506306/35‑1 (MQ=255)
  ttGATCGAAATATGCTGCTGTGGATGCTGGCGGAg                                  >  1:120583/1‑35 (MQ=37)
  ttGATCGAAATATGCTGCTGTGGATGCTGACGCAg                                  <  1:12299189/35‑1 (MQ=255)
  ttGATCGAAATATGCTGCTGTGGATGCTGACGCAg                                  <  1:6290146/35‑1 (MQ=255)
  ttGATCGAAATATGCTGCTGTGGATGCTGACGCAg                                  <  1:9308568/35‑1 (MQ=255)
  cttgaagtgccatttgaagcaggcagcggccccag                                  >  1:6046492‑M1/33‑35 (MQ=255)
  cttgaagtgccatttgaagcaggcagcggccccag                                  <  1:13429530‑M1/3‑1 (MQ=255)
   ttgaagtgccatttgaagcaggcagcggcccccgc                                 <  1:16100794‑M1/4‑4 (MQ=255)
   ttgaagtgccatttgaagcaggcagcggccccagc                                 >  1:20518156‑M1/32‑35 (MQ=255)
   tGATCGAAATATGCTGCTGTGGATGCTGACGCAGc                                 <  1:13987285/35‑1 (MQ=255)
    gATCGAAATATGCTGCTGTGGATGCTGACGCCGcc                                >  1:6024765/1‑35 (MQ=255)
    gATCGAAATATGCTGCTGTGGATGCTGACGCAGcc                                <  1:15969713/35‑1 (MQ=255)
    gATCGAAATATGCTGCTGTGGATGCTGACGCAGcc                                <  1:11283820/35‑1 (MQ=255)
    gATCGAAATATGCTGCTGTGGATGCTGACGCAGcc                                >  1:5842544/1‑35 (MQ=255)
     gaagtgccatttgaagcaggcagcggccccagcca                               <  1:2639158‑M1/6‑1 (MQ=255)
     gaagtgccatttgaagcaggcagcggccccagcca                               <  1:8017071‑M1/6‑1 (MQ=255)
     aTCGAAATATGCTGCTGTGGATGGTGGGGCAGGCa                               >  1:11378341/1‑35 (MQ=19)
      aagtgccatttgaagcaggcagcggccccagccag                              >  1:14692364‑M1/29‑35 (MQ=255)
      aagtgccatttgaagcaggcagcggccccagccag                              <  1:11627382‑M1/7‑1 (MQ=255)
      aagtgccatttgaagcaggcagcggccccagccag                              <  1:7795776‑M1/7‑1 (MQ=255)
      aagtgccatttgaagcaggcagcggccccagccag                              <  1:8251241‑M1/7‑1 (MQ=255)
        gAAATATGCTGCTGTGGATGCTGACGCAGCAAGTc                            <  1:5525947/35‑1 (MQ=255)
         aaaTATGCTGCTGTGGATTCTGACGCAGCCAGTCg                           >  1:14914414/1‑35 (MQ=255)
             atGCTGCTGTGGATGCTGACGCAGCCCGGCGcccc                       >  1:17662053/1‑34 (MQ=25)
                ctgctgGGGGTGGTGCCCCAGCCAGTCGCCCatat                    <  1:8582850/35‑1 (MQ=12)
                     gtgGGTGCCGCCCCAGCCAGTCGCCCATATCTTCa               <  1:3652644/35‑1 (MQ=16)
                     gtgGATCCTCCCCCAGCCAGTCGCCCATATCTTCa               <  1:11902654/35‑1 (MQ=16)
                      tgGATGCTGCCCCAGCCAGTCGCCCATATCTTCaa              <  1:9623421/35‑1 (MQ=25)
                      tgGATGCTGACGCAGCCAGTCGCCCATATCTTCaa              >  1:5309816/1‑35 (MQ=255)
                      tgGATGCTGACGCAGCCAGTCGCCCATATCTTCaa              >  1:140975/1‑35 (MQ=255)
                      tgGATGCGGCCCCAGCCAGTCGCCCATATCTTCaa              <  1:4727579/35‑1 (MQ=21)
                       ggccgcggcccCAGCCAGTCGCCCATATCTTCaaa             >  1:6606941‑M1/12‑35 (MQ=255)
                        gATGCTGACGCAGCCAGTCGCCCATATCTTCAAAg            >  1:5918645/1‑35 (MQ=255)
                        gATGCTGACGCAGCCAGTCGCCCATATCTTCAAAg            >  1:10118464/1‑35 (MQ=255)
                        gATGCTGACGCAGCCAGTCGCCCATATCTTCAAAg            >  1:15369599/1‑35 (MQ=255)
                        gATGCTGACGCAGCCAGTCGCCCATATCTTCAAAg            >  1:10976827/1‑35 (MQ=255)
                         ttGCTGCCCCAGCCAGTCGCCCATATCTTCAAAGa           <  1:4185150/34‑1 (MQ=25)
                         aTGCTGACGCAGCCAGTCGCCCATATCTTCAAAGa           >  1:18059318/1‑35 (MQ=255)
                         aTGCTGACGCAGCCAGTCGCCCATATCTTCAAAGa           >  1:17247140/1‑35 (MQ=255)
                          ggcggcccCAGCCAGTCGCCCATATCTTCAAAGAc          >  1:13004132‑M1/9‑35 (MQ=255)
                           gcggcccCAGCCAGTCGCCCATATCTTCAAAGACg         >  1:6691224‑M1/8‑35 (MQ=255)
                           gCTGACGCAGCCAGTCGCCCATATCTTCAAAGACg         >  1:19708804/1‑35 (MQ=255)
                           ccgccccCAGCCAGTCGCCCATATCTTCAAAGACg         >  1:162656‑M1/8‑35 (MQ=255)
                            cTGACGCAGCCAGTCGCCCATATCTTCAAAGACGc        >  1:11345227/1‑35 (MQ=255)
                            cTGACGCAGCCAGTCGCCCATATCTTCAAAGACGc        >  1:887045/1‑35 (MQ=255)
                            cTGACGCAGCCAGTCGCCCATATCTTCAAAGACGc        >  1:17635363/1‑35 (MQ=255)
                            cTGACGCAGCCAGTCGCCCATATCTTCAAAGACGc        >  1:15515220/1‑35 (MQ=255)
                            cTGACGCAGCCAGTCGCCCATATCTTCAAAGACGc        >  1:1653236/1‑35 (MQ=255)
                             tGACGCAGCCAGTCGCCCATATCTTCAAAGACGct       >  1:9142202/1‑35 (MQ=255)
                             tGACGCAGCCAGTCGCCCATATCTTCAAAGACGct       >  1:5165486/1‑35 (MQ=255)
                             tGACGCAGCCAGTCGCCCATATCTTCAAAGACGct       >  1:10511929/1‑35 (MQ=255)
                             tGACGCAGCCAGTCGCCCATATCTTCAAAGACGct       >  1:3878853/1‑35 (MQ=255)
                             gccccCAGCCAGTCGCCCATATCTTCAAAGACGct       >  1:17817003‑M1/6‑35 (MQ=255)
                             cccccCAGCCAGTCGCCCATATCTTCAAAGACGct       >  1:17247670‑M1/6‑35 (MQ=255)
                              gcccCAGCCAGTCGCCCATATCTTCAAAGACGctt      >  1:4056725‑M1/5‑35 (MQ=255)
                              gcccCAGCCAGTCGCCCATATCTTCAAAGACGctt      >  1:11147058‑M1/5‑35 (MQ=255)
                              gcccCAGCCAGTCGCCCATATCTTCAAAGACGctt      >  1:17324112‑M1/5‑35 (MQ=255)
                              gACGCAGCCAGTCGCCCATATCTTCAAAGACGctt      >  1:10589440/1‑35 (MQ=255)
                              gACGCAGCCAGTCGCCCATATCTTCAAAGACGctt      >  1:19325929/1‑35 (MQ=255)
                              gACGCAGCCAGTCGCCCATATCTTCAAAGACGctt      >  1:2795420/1‑35 (MQ=255)
                              gACGCAGCCAGTCGCCCATATCTTCAAAGACGctt      >  1:15430793/1‑35 (MQ=255)
                              ccccCAGCCAGTCGCCCATATCTTCAAAGACGctt      >  1:16133215‑M1/5‑35 (MQ=255)
                               cccCAGCCAGTCGCCCATATCTTCAAAGACGcttc     >  1:2607843‑M1/4‑35 (MQ=255)
                               aCGCAGCCAGTCGCCCATATCTTCAAAGACGcttc     >  1:13384912/1‑35 (MQ=255)
                               aCGCAGCCAGTCGCCCATATCTTCAAAGACGcttc     >  1:312499/1‑35 (MQ=255)
                                ccCAGCCAGTCGCCCATATCTTCAAAGACGcttct    >  1:9396718‑M1/3‑35 (MQ=255)
                                ccCAGCCAGTCGCCCATATCTTCAAAGACGcttct    >  1:15629727‑M1/3‑35 (MQ=255)
                                ccCAGCCAGTCGCCCATATCTTCAAAGACGcttct    >  1:6633266‑M1/3‑35 (MQ=255)
                                ccCAGCCAGTCGCCCATATCTTCAAAGACGcttct    >  1:11045371‑M1/3‑35 (MQ=255)
                                 gCAGCCAGTCGCCCATATCTTCAAAGACGcttctt   >  1:15524089/1‑35 (MQ=255)
                                 gCAGCCAGTCGCCCATATCTTCAAAGACGcttctt   >  1:18545802/1‑35 (MQ=255)
                                 gCAGCCAGTCGCCCATATCTTCAAAGACGcttctt   <  1:19482697/35‑1 (MQ=255)
                                 cCAGCCAGTCGCCCATATCTTCAAAGACGcttctt   >  1:16607884‑M1/2‑35 (MQ=255)
                                 cCAGCCAGTCGCCCATATCTTCAAAGACGcttctt   >  1:14590627‑M1/2‑35 (MQ=255)
                                 cCAGCCAGTCGCCCATATCTTCAAAGACGcttctt   >  1:1978645‑M1/2‑35 (MQ=255)
                                 cCAGCCAGTCGCCCATATCTTCAAAGACGcttctt   >  1:4635681‑M1/2‑35 (MQ=255)
                                 cCAGCCAGTCGCCCATATCTTCAAAGACGcttctt   >  1:461702‑M1/2‑35 (MQ=255)
                                  CAGCCAGTCGCCCATATCTTCAAAGACGCTTCTta  <  1:3216180‑M1/35‑1 (MQ=255)
                                  CAGCCAGTCGCCCATATCTTCAAAGACGCTTCTta  >  1:18209632‑M1/1‑35 (MQ=255)
                                  CAGCCAGTCGCCCATATCTTCAAAGACGCTTCTta  <  1:1567025‑M1/35‑1 (MQ=255)
                                  CAGCCAGTCGCCCATATCTTCAAAGACGCTTCTta  >  1:84942‑M1/1‑35 (MQ=255)
                                  CAGCCAGTCGCCCATATCTTCAAAGACGCTTCTta  <  1:8072926‑M1/35‑1 (MQ=255)
                                  CAGCCAGTCGCCCATATCTTCAAAGACGCTTCTta  >  1:3027859‑M1/1‑35 (MQ=255)
                                  CAGCCAGTCGCCCATATCTTCAAAGACGCTTCTta  >  1:13141474‑M1/1‑35 (MQ=255)
                                  CAGCCAGTCGCCCATATCTTCAAAGACGCTTCTta  <  1:13734428‑M1/35‑1 (MQ=255)
                                  CAGCCAGTCGCCCATATCTTCAAAGACGCTTCTta  <  1:15068927‑M1/35‑1 (MQ=255)
                                  |                                  
GATTGATCGAAATATGCTGCTGTGGATGCTGACGCAGCCAGTCGCCCATATCTTCAAAGACGCTTCTTA  >  REL606/449601‑449669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.