New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422591 =80 (0.780)12 (0.150) 3/38 NT 17.9% intergenic (‑278/+184) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter
?REL606 = 2605528 47 (0.580)coding (679/1254 nt) glyA serine hydroxymethyltransferase

Only 100 of 117 total aligned reads displayed.

AGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATGAGGAACCGGG  >  REL606/2605494‑2605562
                                  |                                  
agcccgccgCGCGGACCCGCCAGGGTTTTGTGAgt                                    <  1:14037867/32‑1 (MQ=255)
aGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAgt                                    >  1:3203185/1‑35 (MQ=255)
 ggCCTCCGCGCGGACCCGCCAGGGTTTTGTGAGTg                                   <  1:2657364‑M2/35‑2 (MQ=255)
 ggCCGCAGCGCGGACCCGCCAGGGTTTTGTGAGTg                                   >  1:7487442‑M2/1‑34 (MQ=255)
  gccgccGCGCGGACCCGCCAGGGTTTTGTGAGTgg                                  <  1:10259806‑M2/35‑3 (MQ=255)
  gccgccGCGCGGACCCGCCAGGGTTTTGTGAGTgg                                  <  1:697361‑M2/35‑3 (MQ=255)
   ccgccgCGCGGACCCGCCAGGGTTTTGTGAGTggt                                 <  1:3373737‑M2/35‑4 (MQ=255)
   ccgccgCGCGGACCCGCCAGGGTTTTGTGAGTggt                                 <  1:4876347‑M2/35‑4 (MQ=255)
    cgccgcGCGGCCCCGCCAGGGTTTTGTGAGTggtg                                >  1:3818203‑M2/1‑31 (MQ=255)
    cgccgcGCGGACCCGCCAGGGTTTTGTGAGTtgtg                                <  1:19826000‑M2/35‑5 (MQ=255)
    cgccgcGCGGACCCGCCAGGGTTTTGTGAGTggtg                                <  1:17214636‑M2/35‑5 (MQ=255)
    cgccgcGCGGACCCGCCAGGGTTTTGTGAGTggtg                                >  1:3423178‑M2/1‑31 (MQ=255)
    cgccgcGCGGACCCGCCAGGGTTTTGTGAGTggtg                                >  1:9446786‑M2/1‑31 (MQ=255)
     gccgcGCGGACCCGCCAGGGTTTTGTGAGTggtgg                               <  1:5513818‑M2/35‑6 (MQ=255)
     gccgcGCGGACCCGCCAGGGTTTTGTGAGTggtgg                               <  1:974071‑M2/35‑6 (MQ=255)
     gccgcGCGGACCCGCCAGGGTTTTGTGAGTggtgg                               >  1:3320404‑M2/1‑30 (MQ=255)
      ccgcGCGGACCCGCCAGGGTTTTGTGAGTggtggg                              <  1:8273076‑M2/35‑7 (MQ=255)
       cgcgcgGGCCCGCCAGGGTTTTGTGAGTGGTGgta                             <  1:6282159/35‑1 (MQ=255)
       cgcgcgGACCCGCCAGGGTTTTGTGAGTggtgggg                             <  1:19062868‑M2/35‑8 (MQ=255)
       cgcgcgGACCCGCCAGGGTTTTGTGAGTggtgggg                             <  1:878519‑M2/35‑8 (MQ=255)
       cgcgcgGACCCGCCAGGGTTTTGTGAGTGGTGgta                             <  1:6616567/35‑1 (MQ=255)
       cgcgcgGACCCGCCAGGGTTTTGTGAGTGGTGgta                             <  1:16408425/35‑1 (MQ=255)
       cgcgcgGACCCGCCAGGGTTTTGTGAGTGGTGgta                             <  1:5918186/35‑1 (MQ=255)
        gcgcgGCCCCGCCAGGGTTTTGTGAGTGGTGgtag                            <  1:6555564/35‑1 (MQ=255)
         cgcgGACCCGCCAGGGTTTTGTGAGTggtgggggg                           <  1:20111477‑M2/35‑10 (MQ=255)
         cgcgGACCCGCCAGGGTTTTGTGAGTggtgggggg                           <  1:17085246‑M2/35‑10 (MQ=255)
         cgcgGACCCGCCAGGGTTTTGTGAGTTGTGgtagg                           >  1:13621038/1‑34 (MQ=255)
         cgcgGACCCGCCAGGGTTTTGTGAGTGGTGgtagt                           <  1:2585408/35‑1 (MQ=255)
         cgcaGACCCGCCAGGGTTTTGTGAGTGGTGgtagt                           <  1:19938176/35‑1 (MQ=255)
          gcgGACCCGCCAGGGTTTTGTGAGTggtggggggg                          <  1:6322682‑M2/35‑11 (MQ=255)
          gcgGACCCGCCAGGGTTTTGTGAGTggtggggggg                          <  1:12329414‑M2/35‑11 (MQ=255)
          gcgGACCCGCCAGGGTTTTGTGAGTggtggggggg                          <  1:8810253‑M2/35‑11 (MQ=255)
          gcgGACCCGCCAGGGTTTTGTGAGTggtggggggg                          <  1:15860569‑M2/35‑11 (MQ=255)
          gcgGACCCGCCAGGGTTTTGTGAGTggtggggggg                          <  1:1740012‑M2/35‑11 (MQ=255)
          gcgGACCCGCCAGGGTTTTGTGAGTgggggggggg                          <  1:4175635‑M2/35‑11 (MQ=255)
          gcgGACCCGCCAGGGTTTTGTGAGTGGTGgtagta                          <  1:5749113/35‑1 (MQ=255)
           cgGCCCCGCCAGGGTTTTGTGAGTGGTGGTAGTaa                         <  1:8566164/35‑1 (MQ=255)
           cgGCCCCGCCAGGGTTTTGTGAGTGGTGGTAGTaa                         <  1:5660866/35‑1 (MQ=255)
           cgGACCCGCCAGGGTTTTGTGAGTggtggggggag                         <  1:299456‑M2/35‑12 (MQ=255)
           cgGACCCGCCAGGGTTTTGTGAGTGGTGGTAGTaa                         <  1:9825639/35‑1 (MQ=255)
           cgGACCCGCCAGGGTTTTGTGAGTGGTGGTAGTaa                         <  1:3156468/35‑1 (MQ=255)
            ggACCCGCCAGGGTTTTGTGAGTggtgggggggaa                        <  1:306456‑M2/35‑13 (MQ=255)
            ggACCCGCCAGGGTTTTGTGAGTggtgggggggaa                        <  1:15820885‑M2/35‑13 (MQ=255)
             gACCCGCCAGGGTTTTGTGAGTggtgggggggaga                       <  1:12340464‑M2/35‑14 (MQ=255)
             gACCCGCCAGGGTTTTGTGAGTggtgggggggaca                       <  1:15868046‑M2/35‑14 (MQ=255)
             gACCCGCCAGGGTTTTGTGAGTggtgggggggaaa                       <  1:17608014‑M2/35‑14 (MQ=255)
             gACCCGCCAGGGTTTTGTGAGTggtgggggggaaa                       <  1:9442499‑M2/35‑14 (MQ=255)
             gACCCGCCAGGGTTTTGTGAGTggtgggggggaaa                       <  1:1297414‑M2/35‑14 (MQ=255)
              ccccGCCAGGGTTTTGTGAGTGGTGGTAGTaacaa                      <  1:9080768/34‑1 (MQ=255)
              aCCCGCCAGGGTTTTGTGAGTggtgggggggaaaa                      <  1:3172636‑M2/35‑15 (MQ=255)
              aCCCGCCAGGGTTTTGTGAGTGGTGGTAGTaacaa                      <  1:3200692/35‑1 (MQ=255)
              aCCCGCCAGGGTTTTGTGAGTGGTGGTAGTaacaa                      <  1:876318/35‑1 (MQ=255)
               cccGCCAGGGTTTTGTGAGTggtgggggggaaaaa                     <  1:4320400‑M2/35‑16 (MQ=255)
               cccGCCAGGGTTTTGTGAGTGGTGGTAGTaacaac                     <  1:7555254/35‑1 (MQ=255)
               cccGCCAGGGTTTTGTGAGTGGTGGTAGTaacaac                     <  1:20222680/35‑1 (MQ=255)
               cccGCCAGGGTTTTGTGAGTGGTGGTAGTaacaac                     <  1:3027575/35‑1 (MQ=255)
               cccGCCAGGGTTTTGTGAGTGGTGGTAGTaacaac                     <  1:16744900/35‑1 (MQ=255)
                 cGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGt                   <  1:19814055/35‑1 (MQ=255)
                  gCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTg                  <  1:14904185/35‑1 (MQ=255)
                  gCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTg                  <  1:3907144/35‑1 (MQ=255)
                  gCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTg                  <  1:2165934/35‑1 (MQ=255)
                  gCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTg                  <  1:20454647/35‑1 (MQ=255)
                  gCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTg                  <  1:19379476/35‑1 (MQ=255)
                  gCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTg                  <  1:14225255/35‑1 (MQ=255)
                   ccAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGa                 <  1:20585111/35‑1 (MQ=255)
                   ccAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGa                 <  1:10535127/35‑1 (MQ=255)
                    cAGGGTTTTGTGAGTggtgggggggaaaacaaagg                <  1:9927148‑M2/35‑21 (MQ=255)
                    cAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGAg                <  1:7409827/35‑1 (MQ=255)
                       ggTTTTGTGAGTGGTGGTAGTAACAACGTGAGCAt             <  1:4398293/35‑1 (MQ=255)
                       ggTTTTGTGAGTGGTGGTAGTAACAACGTGAGCAt             <  1:1838544/35‑1 (MQ=255)
                       ggTTTTGTGAGTGGTGGTAGTAACAACGTGAGCAt             <  1:10617747/35‑1 (MQ=255)
                       ggTTTTGTGAGTGGTGGTAGTAACAACGTGAGCAt             <  1:8520108/35‑1 (MQ=255)
                       ggTTTTGTGAGTGGTGGTAGTAACAACGTGAGCAt             <  1:20527793/35‑1 (MQ=255)
                        gTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATg            <  1:17719894/35‑1 (MQ=255)
                        gTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATg            <  1:18589729/35‑1 (MQ=255)
                        gTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATg            <  1:7956727/35‑1 (MQ=255)
                        gTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATg            <  1:11379057/35‑1 (MQ=255)
                        gTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATg            <  1:11702909/35‑1 (MQ=255)
                         ttttGTGAGTGGTGGTAGTAACAACGTGAGCATGa           <  1:2185803/35‑1 (MQ=255)
                         ttttGTGAGTGGTGGTAGTAACAACGTGAGCATGa           <  1:17920734/35‑1 (MQ=255)
                         ttttGTGAGTGGTGGTAGTAACAACGTGAGCATGa           <  1:18408750/35‑1 (MQ=255)
                         ttttGTGAGTGGTGGTAGTAACAACGTGAGCATGa           <  1:4344270/35‑1 (MQ=255)
                          tttGTGAGTGGTGGTAGTAACAACGTGAGCATGAg          <  1:18333628/35‑1 (MQ=255)
                          tttGTGAGTGGTGGTAGTAACAACGTGAGCATGAg          <  1:9147908/35‑1 (MQ=255)
                          tttGTGAGTGGTGGTAGTAACAACGTGAGCATGAg          <  1:8260239/35‑1 (MQ=255)
                           ttGTGAGTGGTGGTAGTAACAACGTGAGCATGAgg         <  1:4497350/35‑1 (MQ=255)
                           ttGTGAGTGGTGGTAGTAACAACGTGAGCATGAgg         <  1:18750113/35‑1 (MQ=255)
                            tgtgAGTGGTGGTAGTAACAACGTGAGCATGAGGa        <  1:14799591/35‑1 (MQ=255)
                             gtgAGTGGTGGTAGTAACAACGTGAGCATGAGGaa       <  1:9013117/35‑1 (MQ=255)
                              tgAGTGGTGGTAGTAACAACGTGAGCATGAGGAAc      <  1:10682537/35‑1 (MQ=255)
                              tgAGTGGTGGTAGTAACAACGTGAGCATGAGGAAc      <  1:20428821/35‑1 (MQ=255)
                              tgAGTGGTGGTAGTAACAACGTGAGCATGAGGAAc      <  1:2055307/35‑1 (MQ=255)
                               gAGTGGTGGTAGTAACAACGTGAGCATGAGGAAcc     <  1:13143839/35‑1 (MQ=255)
                               gAGTGGTGGTAGTAACAACGTGAGCATGAGGAAcc     <  1:8252807/35‑1 (MQ=255)
                               gAGTGGTGGTAGTAACAACGTGAGCATGAGGAAcc     <  1:4840765/35‑1 (MQ=255)
                               gAGTGGTGGTAGTAACAACGTGAGCATGAGGAAcc     <  1:10538309/35‑1 (MQ=255)
                               gAGTGGTGGTAGTAACAACGTGAGCATGAGGAAcc     <  1:11025754/35‑1 (MQ=255)
                                 gtggtgGTAGTAACAACGTGAGCATGAGGAACCgg   <  1:18728271/35‑1 (MQ=255)
                                 gtggtgGTAGTAACAACGTGAGCATGAGGAACCgg   <  1:15045761/35‑1 (MQ=255)
                                  tggtggTAGTAACAACGTGAGCATGAGGAACCggg  <  1:15995374/35‑1 (MQ=255)
                                  |                                  
AGGCCGCCGCGCGGACCCGCCAGGGTTTTGTGAGTGGTGGTAGTAACAACGTGAGCATGAGGAACCGGG  >  REL606/2605494‑2605562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.