New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3826321 =43 (0.420)5 (0.060) 3/42 NT 9.5% coding (314/1662 nt) yidE hypothetical protein
?REL606 = 3885956 58 (0.650)coding (39/1890 nt) gidA glucose‑inhibited division protein A

TCAACCTGTTTGCTGTTCTGATCGTCATCATCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3826357‑3826321
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggCGGGGGTCATGCAGGCACCGAGGCCGCGATGGCC  <  REL606/3885956‑3885923
                                                                       
TCAACCTGTTTGCTGTTCTGATCGTCATCATCGGT                                      <  1:9934113/35‑1
TCAACCTGTTTGCTGTTCTGATCGTCATCATCGGT                                      <  1:9328598/35‑1
TCAACCTGTTTGCTGTTCTGATCGTCATCATCGGT                                      <  1:8595129/35‑1
TCAACCTGTTTGCTGTTCTGATCGTCATCATCGGT                                      <  1:5518899/35‑1
TCAACCTGTTTGCTGTTCTGATCGTCATCATCGGT                                      >  1:5213930/1‑35
TCAACCTGTTTGCTGTTCTGATCGTCATCATCGGT                                      >  1:4102631/1‑35
TCAACCTGTTTGCTGTTCTGATCGTCATCATCGGT                                      <  1:10459885/35‑1
 CAACCTGTTTGCTTTTCTGATCGTCATCATCGGTG                                     >  1:3170720/1‑35
 CAACCTGTTTGCTGTTCTGATCGTCATCATCGGTG                                     <  1:9354781/35‑1
 CAACCTGTTTGCTGTTCTGATCGTCATCATCGGTG                                     >  1:13794474/1‑35
 CAACCTGTTTGCTGTTCTGATCGTCATCATCGGTG                                     <  1:2127150/35‑1
  AACCTGTTTGCTGTTCTGATCGTCATCATCGGTGG                                    <  1:19494423/35‑1
   ACCTGTTTGCTGTTCTGATCGTCATCATCGGTGGg                                   >  1:14881051/1‑34
    CCTGTTTGCTGTTCTGATCGTCATCATCGGTGGgg                                  >  1:7139689/1‑33
     CTGTTTGCTGTTCTGATCGTCATCATCGGTGGGGG                                 >  1:11309648/1‑35
     CTGTTTGCTGTTCTGATCGTCATCATCGGTGGGGG                                 >  1:6782207/1‑35
     CTGTTTGCTGTTCTGATCGTCATCATCGGTGGGGG                                 >  1:2400438/1‑35
     CTGTTTGCTGTTCTGATCGTCATCATCGGTGGGGG                                 >  1:19525106/1‑35
      TGTTTGCTGTTCTGATCGTCATCATCGGTGGGGGG                                >  1:19357248/1‑35
       GTTTGCTGTTCTGATCGTCATCATCGGTGGGGGGG                               >  1:18638028/1‑35
        TTTGCTGTTCTGATCGTCATCATCGGTGGGGGGGG                              >  1:13702779/1‑35
        TTTGCTGTTCTGATCGTCATCATCGGTGGGGGGGG                              >  1:12042794/1‑35
         TTGCTGTTCTGATCGTCATCATCGGTGGGGGGGGg                             >  1:752571/1‑34
         TTGCTGTTCTGATCGTCATCATCGGTGGGGGGGGT                             >  1:7376010/1‑35
          TGCTGTTCTGATCGTCATCATCGGTGGGGGGGGTC                            >  1:7885463/1‑35
                                  TGGCGGGGGTCATGCATGCACCGAGGCCGCGATGG    >  1:19313459/1‑35
                                  TGGCGGGGGTCATGCAGGCACCGAGGCCGCGCTGG    >  1:16688094/1‑35
                                  TGGCGGGGGTCATGCAGGCACCGAGGCCGCGATGG    <  1:14863452/35‑1
                                  TGGCGGGGGTCATGCAGGCACCGAGGCCGCGAAGG    >  1:5020117/1‑35
                                   GGCGGGGGTCATGCAGGCACCGAGGCCGCGATGGC   >  1:4368942/1‑35
                                    GCGGGGGTCATGCCGGCACCGAGGCCGCGATGGCC  >  1:39411/1‑35
                                    GCGGGGGTCATGCAGGCACCGAGGCCGCGATGGCC  <  1:8733523/35‑1
                                                                       
TCAACCTGTTTGCTGTTCTGATCGTCATCATCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3826357‑3826321
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggCGGGGGTCATGCAGGCACCGAGGCCGCGATGGCC  <  REL606/3885956‑3885923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.