Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,805,203 | C→A | 14.0% | V108L (GTA→TTA) | astB ← | succinylarginine dihydrolase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,805,203 | 0 | C→A | 14.0% | 8.2 ‑5.5 0.0 | 70 | V108L (GTA→TTA) | astB | succinylarginine dihydrolase |
Reads supporting (aligned to +/- strand): new base (8/2): ref base (18/42): total (26/44) | ||||||||||
Fisher's exact test strand distribution p-value = 4.09e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TCGGCAGATGGCGCGATCGTTGCCGCATTGGCTACCCACATTGGCGAAGCGGAACTGACGCTGGAAAGC > REL606/1805169‑1805237 | tCGGCAGATGGCGCGATCGTTGCCGCATTGGCTAc < 1:1858187/35‑1 (MQ=255) tCGGCAGATGGCGCGATCGTTGCCGCATTGGCTAc < 1:2381087/35‑1 (MQ=255) tCGGCAGATGGCGCGATCGTTGCCGAATTGGCTAc < 1:15579314/35‑1 (MQ=255) cGGCGGATGGCGCGATCGTTGCCGCATTGGCTAcc < 1:15272569/35‑1 (MQ=255) cGGCAGATGGCGCGATCGTTGCCGCATTGGCTAcc < 1:19075228/35‑1 (MQ=255) ggCAGATTGCGCGATCGTTGCCGCATTGGCTAacc > 1:3277291/1‑35 (MQ=37) ggCAGATGGCGCGATCGTTGCCGCATTGGCTAccc < 1:3566454/35‑1 (MQ=255) ggCAGATGGCGCGATCGTTGCCGCATTGGCTAccc < 1:1309637/35‑1 (MQ=255) ggCAGATGGCGCGATCGTTGCCGCATTGGCTAcac > 1:7233774/1‑33 (MQ=255) ggCAGATGGCGCGATCGTTGCCGAATTGGCTAcca > 1:2770488/1‑34 (MQ=255) aGATGGCGCGATCGTTGCCGCATTGGCTACCccca > 1:14850811/1‑35 (MQ=255) aGATGGCGCGATCGTTGCCGCATTGGCTAACcaca > 1:9958504/1‑35 (MQ=255) aGATGGCGCGATCGTTGCCGCATTAGCTACCcaca < 1:18014753/35‑1 (MQ=255) gATGGCGCGATCGTTGCCGCATTGGCTACCCACAt < 1:523776/35‑1 (MQ=255) gATGGCGCGATCGTTGCCGCATTGGCTACCCACAt < 1:18225284/35‑1 (MQ=255) gATGGCGCGATCGTTGCCGCATTGGCTACCCACAt < 1:5076669/35‑1 (MQ=255) gATGGCGCGATCGTTGCAGCATTGGCTACCCACAt < 1:8602817/35‑1 (MQ=255) gATAGCGCGATCGTTGCCGCATTGGCTACCCACAt < 1:13796190/35‑1 (MQ=255) aTGGCGCGATCGTTGCCGCATTGGCTACCCACAtt < 1:5149817/35‑1 (MQ=255) aTGGCGCGATCGTTGCCGCATTGGCTAACCCCAtt > 1:4282269/1‑35 (MQ=37) tGGCGCGATCGTTGCCGCATTGGCTAACCACATTg > 1:4995712/1‑35 (MQ=255) tGGCGCGATCGTTGCCGCATTGGCTAACCACATTg > 1:3575820/1‑35 (MQ=255) gggCGCGATCTTTGCCGCATTGGCTACCCACATTg < 1:15104561/34‑1 (MQ=255) gggCGCGATCGTTGCCGCATTGGCTACCCACATTg < 1:3195045/34‑1 (MQ=255) ggCGCGATCGTTGCCGCATTGGCTACCCACATTgg > 1:12083031/1‑35 (MQ=255) ggCGCGATCGTTGCCGCATTGGCTACACACATTgg < 1:12549584/35‑1 (MQ=255) gcgcGTTCGTTGCCGCATTGGCTACCCACATTGGc < 1:5211650/35‑1 (MQ=255) gcgcGCTCGTTGCCCCATTGGCTACCCACATTGGc < 1:4314880/35‑1 (MQ=38) gcgcGATCTTTGCCGCATTGGCTACCCACATTGGc < 1:16095777/35‑1 (MQ=255) gcgcGATCGTTGCCGCATTGGCTACCCACATTGGc > 1:19951079/1‑35 (MQ=255) gcgcGATCGTTGCCGCATTGCCTAACCACATTGGc > 1:4883144/1‑35 (MQ=37) cgcgATCGTTGCCGCATTTGCTACCCACATTGGCg > 1:11268019/1‑35 (MQ=255) cgcgATCGTTGCCGCATTGGCTACCCCCATTGGCg > 1:9874174/1‑35 (MQ=255) cgcgATCGTTGCCGCATTGGCTACCCACATTGGCg > 1:15294797/1‑35 (MQ=255) cgcgATCGTTGCCGCATTGGCTACCCACAATGGCg > 1:4668477/1‑35 (MQ=255) cgcgATCGTTCCCGCATTGGCTACCCACATTGGCg < 1:18335028/35‑1 (MQ=255) gcgATCGTTGCCGCATTGGCTACCCACATTGGCGa < 1:3482936/35‑1 (MQ=255) gcgATCGTTGCCGCATTGGCTACCCACATTGGCGa > 1:9401598/1‑35 (MQ=255) gcgATCGTTGCCGCATTGGCTACCCACATTGGCGa > 1:12852741/1‑35 (MQ=255) gcgATCGTTGCCGCATTGGCTAACCACATTggggg > 1:19152966/1‑32 (MQ=37) gcgATCGTTGCCGCATTAGCTACCCACATTGGCGa < 1:62140/35‑1 (MQ=255) ctaTCGTTGCCGCATTGGCTACCCACATTGGCGaa < 1:1704970/33‑1 (MQ=255) cgATCTTTGCCGCATTGGCTACCCACATTGGCGag < 1:19007968/35‑2 (MQ=255) cgATCGTTGCCGCATTGGCTACCCACATTGGCGaa < 1:6957291/35‑1 (MQ=255) cgATCGTTGCCGCATTGGCTACCCACATTGGCGaa < 1:10772896/35‑1 (MQ=255) gATCGTTGCCGCATTGGCTACCCACATTGGCGAAg > 1:6990297/1‑35 (MQ=255) gATCGTTGCCGCATTGGCTACCCACATTGGCGAAg > 1:12078833/1‑35 (MQ=255) aTCTTTGCCGCATTGGCTACCCACATTGGCGAAGc < 1:18128544/35‑1 (MQ=255) aTCGTTGCCGCATTGGCTACCCCCATTGGCGAAGc > 1:19465782/1‑35 (MQ=255) aTCGTTGCCGCATTGGCTACCCACATTGGCGAAGc < 1:5463139/35‑1 (MQ=255) aTCGTTGCCGCATTGGCTAACCACATTGGCGAAGc > 1:3100606/1‑35 (MQ=255) tctttGCCGCATTGGCTACCCACATTGGCGAAGCg < 1:13834720/32‑1 (MQ=255) tctttGCCGCATTGGCTACCCACATTGGCGAAGCg < 1:18117822/32‑1 (MQ=255) tCGTTGCCGCATTGGCTACCCACATTGGCGAAGCg < 1:13456260/35‑1 (MQ=255) tCGTTGCCCCATTGGCTACCCACATTGGCGAAGCg < 1:11317601/35‑1 (MQ=255) ttGCCGCATTGGCTACCCACATTGGCGAAGCGGaa < 1:8227839/35‑1 (MQ=255) tGCCGCATTGGCTACCCACATTGGCGAAGCGGAAc < 1:19467861/35‑1 (MQ=255) gCCGCATTGGCTACCCACATTGGCGAAGCGGAACt < 1:20021806/35‑1 (MQ=255) gCCGCATTGGCTACCCACATTGGCGAAGCGGAACt > 1:635948/1‑35 (MQ=255) ccccATTGGCTACCCACATTGGCGAAGCGGAACTg < 1:10751026/32‑1 (MQ=255) ccccATTGGCTACCAACATTGGCGAAGCGGAACTg < 1:3483997/32‑1 (MQ=37) ccGCATTGGCTACCCACATTGGCGAAGCGGAACTg < 1:15026994/35‑1 (MQ=255) ccGCATTGGCTACCCACATTGGCGAAGCGGAACTg < 1:11720176/35‑1 (MQ=255) ccGCATTGGCTACCCACATTGGCGAAGCGGAACTg < 1:17279122/35‑1 (MQ=255) ccGCATTGGCTAACCACATTGGCGAAGCGGAACTg > 1:5438817/1‑35 (MQ=255) cccATTGGCTACCCACATTGGCGAAGCGGAACTGa < 1:450436/33‑1 (MQ=255) cccATTGGCTAACCACATTGGCGAAGCGGAACTGa < 1:1816252/33‑1 (MQ=38) cGCGTTGGCTAACCACATTGGCGAAGCGGAACTGa < 1:18380520/35‑1 (MQ=37) cGCATTGGCTACCCACATTGGCGAAGCGGAACTGa > 1:6902510/1‑35 (MQ=255) cGCATTGGCTAACCACATTGGCGAAGCGGAAATGa > 1:10755898/1‑35 (MQ=37) gCATTGGCTACCCACATTGGCGAAGCGGAACTGAc < 1:13488004/35‑1 (MQ=255) gCATTGGCTACCCACATTGGCGAAGCGGAACTGAc < 1:13782024/35‑1 (MQ=255) gCATTGGCTACCCACATTGGCGAAGCGGAACTGAc < 1:3962879/35‑1 (MQ=255) ccATTGGCTACCCACATTGGCGAAGCGGAACTGAc < 1:7659671/34‑1 (MQ=255) ccATTGGCTACCCACATTGGCGAAGCGGAACTGAc < 1:19257884/34‑1 (MQ=255) ctttGGCTCCCCACATTGGCGAAGCGGAACTGACg < 1:19134809/33‑1 (MQ=38) cATTGGCTACCCAAATTGGCGAAGCGGAACTGACg < 1:10759285/35‑1 (MQ=255) cATTGGCTAACCACATTGGCGGAGCGGGAATGACg > 1:16900110/1‑35 (MQ=16) cATTGGCTAACCACATTGGCGAAGCGGAACTGACg > 1:5662526/1‑35 (MQ=255) cATTGGCTAACCACATTGGCGAAGCGGAAATGACg > 1:6304006/1‑35 (MQ=37) aTTGGCTCCCCACATTGGCGAAGCGGAACTGACGc < 1:15161544/35‑1 (MQ=255) aTTGGCTACCCACATTGGCGAAGCGGAACTGAAGc < 1:7991166/35‑1 (MQ=255) tGGCTACCCACATTGGCGAAGCGGAACTGACGCTg > 1:14867226/1‑35 (MQ=255) tGGCTACCCACATTGGCGAAGCGGAACTGACGCTg > 1:17409237/1‑35 (MQ=255) gCTACCCACATTGGCGAAGCGGAACTGACGCTGGa > 1:13239047/1‑35 (MQ=255) gCTACCCACATTGGCGAAGCGGAACTGACGCTGGa > 1:17418491/1‑35 (MQ=255) gCTACCCACATTGGCGAAGCGGAACTGACGCTGGa > 1:2006283/1‑35 (MQ=255) cTACCCACATTGGCGAAGCGGAACTGACGCTGGaa > 1:20300638/1‑35 (MQ=255) tACCCACATTGGCGAAGCGGAACTGACGCTGGaaa > 1:8538497/1‑35 (MQ=255) tACCCACATTGGCGAAGCGGAACTGACGCTGGaaa > 1:9764871/1‑35 (MQ=255) cccACATTGGCGAAGCGGAACTGACGCTGGAAAGc > 1:1420631/1‑35 (MQ=255) cccACATTGGCGAAGCGGAACTGACGCTGGAAAGc > 1:13214333/1‑35 (MQ=255) | TCGGCAGATGGCGCGATCGTTGCCGCATTGGCTACCCACATTGGCGAAGCGGAACTGACGCTGGAAAGC > REL606/1805169‑1805237 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |