Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 16,990 | IS150 (+) +3 bp | 100% | intergenic (‑32/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 16990 = | 0 (0.000) | 81 (0.790) | 38/48 | NT | 100% | intergenic (‑32/‑498) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
* | ? | REL606 | = 16992 | 0 (0.000) | 58 (0.560) | 29/48 | NT | 100% | intergenic (‑34/‑496) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region |
Only 100 of 107 total aligned reads displayed.
TTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/17023‑16990 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACA < REL606/590471‑590439 TTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTT > 1:16644898/1‑35 TTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTT < 1:16981471/35‑1 TAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTTG < 1:9122142/35‑1 TAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTTG > 1:1536623/1‑35 GCTGAACGGCAGATAGAGAAAAGCCCCGAGTTGTA < 1:11151918/35‑1 GCTGAACGGCAGATAGAGAAAAGCCCCGAGTTGTA < 1:19668581/35‑1 gGAACGGCAGATAGAGAAAAGCCCCGAGTTGTACT < 1:19137257/34‑1 TGAACGGCAGATAGAGAAAAGCCCCGAGTTGTACT < 1:19304301/35‑1 TGAACGGCAGATAGAGAAAAGCCCCGAGTTGTACT > 1:12968855/1‑35 TGAACGGCAGATAGAGAAAAGCCCCGAGTTGTACT < 1:15780948/35‑1 TGAACGGCAGATAGAGAAAAGCCCCGAGTTGTACT > 1:14106864/1‑35 GAACGGCAGATAGAGAAAAGCCCCGAGTTGTACTG > 1:3448358/1‑35 GAACGGCAGATAGAGAAAAGCCCCGAGTTGTACTG > 1:5260650/1‑35 GAACGGCAGATAGAGAAAAGCCCCGAGTTGTACTG < 1:13725858/35‑1 GAACGGCAGATAGAGAAAAGCCCCGAGTTGTACTG > 1:10164638/1‑35 agCGGCAGATAGAGAAAAGCCCCGAGTTGTACTGA < 1:9648921/33‑1 AACGGCAGATAGAGAAAAGCCCCGAGTTGTACTGA < 1:15851334/35‑1 cCGGCAGATAGAGAAAAGCCCCGAGTTGTACTGAC < 1:2786296/34‑1 ACGGCAGATAGAGAAAAGCCCAGAGTTGTACTGAC < 1:1280460/35‑1 CGGCAGATAGAGAAAAGCCCCGAGTTGTACTGACC < 1:17127603/35‑1 CGGCAGATAGAGAAAAGCCCCGAGTTGTACTGACC > 1:13199820/1‑35 GCAGATAGAGAAAAGCCCCGAGTTGTACTGACCCC > 1:6825455/1‑35 CAGATAGAGAAAAGCCCCGAGTTGTACTGACCCCA < 1:19711171/35‑1 CAGATAGAGAAAAGCCCCGAGTTGTACTGACCCCA > 1:2360928/1‑35 CAGATAGAGAAAAGCCCCGAGTTGTACTGACCCCA < 1:1739613/35‑1 CAGATAGAGAAAAGCCCCGAGTTGTACTGACCCCA > 1:18508548/1‑35 CAGATAGAGAAAAGCCCCGAGTTGTACTGACCCCA > 1:11507293/1‑35 AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA > 1:8425105/1‑35 AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA > 1:6380233/1‑35 AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA > 1:12181362/1‑35 AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA > 1:6185761/1‑35 AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA < 1:1677598/35‑1 AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA > 1:12127682/1‑35 AGATAGAGAAAAGCCCCGAGTTGTACTGACCCCAA > 1:18705317/1‑35 AGATAGAGAAAAGCCCCGAGTTGTACTGACCCAAA < 1:10753225/35‑1 GATAGAGAAAAGCCCCGAGTTGTACTGACCCCAAA > 1:2802206/1‑35 GATAGAGAAAAGCCCCGAGTTGTACTGACCCCAAA < 1:16140927/35‑1 GATAGAGAAAAGCCCCGAGTTGTACTGACCCCAAA > 1:5909647/1‑35 ATAGAGAAAAGCCCCGAGTTGTACTGACCCCAAAA > 1:14785681/1‑35 ATAGAGAAAAGCCCCGAGTTGTACTGACCCCAAAA < 1:11581269/35‑1 TAGAGAAAAGCCCCGAGTTGTACTGACCCCAAAAA > 1:8413549/1‑35 TAGAGAAAAGCCCCGAGTTGTACTGACCCCAAAAA > 1:10540238/1‑35 AGAGAAAAGCCCCGAGTTGTACTGACCCCAAAAAG < 1:14304705/35‑1 AGAGAAAAGCCCCGAGTTGTACTGACCCCAAAAAG > 1:19131480/1‑35 GAGAAAAGCCCCGAGTTGTACTGACCCCAAAAAGT > 1:17227164/1‑35 aaAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTT < 1:17802022/33‑1 AGAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTT > 1:19955870/1‑35 AGAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTT > 1:4764112/1‑35 AGAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTT > 1:13799072/1‑35 GAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTG > 1:19394123/1‑35 GAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTG < 1:11256195/35‑1 GAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTG > 1:17359638/1‑35 GAAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTG > 1:4847296/1‑35 AAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGG < 1:339824/35‑1 AAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGG < 1:5935759/35‑1 AAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGG < 1:7380613/35‑1 AAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGG > 1:2883616/1‑35 AAAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGG > 1:13874678/1‑35 AAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGA < 1:4087498/35‑1 AAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGA < 1:20215807/35‑1 AAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGA > 1:2587083/1‑35 AAAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGA > 1:8569858/1‑35 AAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGAC > 1:9649708/1‑35 AAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGAC > 1:3354373/1‑35 AAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGAC > 1:2972537/1‑35 AAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGAC > 1:14460477/1‑35 AAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGAC > 1:15839655/1‑35 AAGCCCCGAGTTGTACTGACCCCAAAAAGTTGGAC > 1:17250590/1‑35 AGCCCCGAGTTGTACTGACCCCAAAAAGTTGGACA > 1:271521/1‑35 AGCCCCGAGTTGTACTGACCCCAAAAAGTTGGACA < 1:16010254/35‑1 AGCCCCGAGTTGTACTGACCCCAAAAAGTTGGACA < 1:18080528/35‑1 AGCCCCGAGTTGTACTGACCCCAAAAAGTTGGACA < 1:1716522/35‑1 GCCCCGAGTTGTACTGACCCCAAAAAGTTGGACAG < 1:10889814/35‑1 GCCCCGAGTTGTACTGACCCCAAAAAGTTGGACAG > 1:9542034/1‑35 GCCCCGAGTTGTACTGACCCCAAAAAGTTGGACAG < 1:16740188/35‑1 GCCCCGAGTTGTACTGACCCCAAAAAGTTGGACAG < 1:16976552/35‑1 GCCCCGAGTTGTACTGACCCCAAAAAGTTGGACAG > 1:5256587/1‑35 CCCCGAGTTGTACTGACCCCAAAAAGTTGGACAGT < 1:8328984/35‑1 CCGAGTTGTACTGACCCCAAAAAGTTGGACAGTTA > 1:2593181/1‑35 CCGAGTTGTACTGACCCCAAAAAGTTGGACAGTTA > 1:8864062/1‑35 CCGAGTTGTACTGACCCCAAAAAGTTGGACAGTTA < 1:5539140/35‑1 CCGAGTTGTACTGACCCCAAAAAGTTGGACAGTTA > 1:19192595/1‑35 CGAGTTGTACTGACCCCAAAAAGTTGGACAGTTAA > 1:17821865/1‑35 GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:11647322/35‑1 GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:9527921/1‑35 GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:4307335/35‑1 GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:3094557/1‑35 GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:6920623/1‑35 GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:6612182/1‑35 GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:17125584/35‑1 GAGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:3798717/1‑35 AGTTGTACTGACCCCAAAAAGTTTGACAGTTAAAC > 1:15646708/1‑35 AGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:14056798/35‑1 AGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC > 1:19284257/1‑35 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:2065093/1‑35 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:589515/1‑35 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:1526632/35‑1 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:15889587/35‑1 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:2551389/1‑35 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:9648855/35‑1 TTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/17023‑16990 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACA < REL606/590471‑590439 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |