New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2698091 =73 (0.710)6 (0.070) 3/40 NT 9.3% coding (1992/2145 nt) nrdE ribonucleotide‑diphosphate reductase alpha subunit
?REL606 3668825 = 56 (0.650)coding (873/2031 nt) malS periplasmic alpha‑amylase precursor

Only 100 of 143 total aligned reads displayed.

CGACTCGCCATGTCGATCAGGGGCTGTCGCTGACGCTTTTTTTCCCCGATACCGCCACCACTCGCGATA  >  REL606/2698057‑2698125
                                   |                                  
cGACTGGCCATGTCGATCAGGGGCTGTCGCTGACg                                    <  1:9451207/35‑1 (MQ=255)
cGACTCGCCATGTCGATCAGGGGCTGTCGCTGACg                                    <  1:17585069/35‑1 (MQ=255)
cGACTCGCCATGTCGATCAGGGGCTGTCGCTGACg                                    <  1:17108742/35‑1 (MQ=255)
 gACTCGCCATGTCGATCAGGGGCTGTCGCTGACGc                                   <  1:5275713/35‑1 (MQ=255)
 ctgatgtgcgctatcaaccagcgtccgtagatcgg                                    >  1:16468031‑M1/35‑35 (MQ=255)
 ctgatgtgcgctatcaaccagcgtccgtagatcgg                                    <  1:16054077‑M1/1‑1 (MQ=255)
 ctgatgtgcgctatcaaccagcgtccgtagatcgg                                    <  1:9120566‑M1/1‑1 (MQ=255)
 ctgatgtgcgctatcaaccagcgtccgtagatcgg                                    <  1:13839499‑M1/1‑1 (MQ=255)
 ctgatgtgcgctatcaaccagcgtccgtagatcgg                                    >  1:3822356‑M1/35‑35 (MQ=255)
  tgatgtgcgctatcaaccatcgtccgtagatcgGc                                   <  1:16298117‑M1/2‑1 (MQ=255)
  tgatgtgcgctatcaaccagcgtccgtagatcgGc                                   <  1:13052591‑M1/2‑1 (MQ=255)
  tgatgtgcgctatcaaccagcgtccgtagatcgGc                                   >  1:1268475‑M1/34‑35 (MQ=255)
  tgatgtgcgctatcaacaagcgtccgtagatcgGc                                   >  1:6957692‑M1/34‑35 (MQ=255)
  tgaggtgcgctatcaaccagcgtccgtagatcgGc                                   >  1:15895738‑M1/34‑35 (MQ=255)
  ccTCGCCATGTCGATCAGGGGCTGTCGCTGACGCt                                  <  1:8279106/34‑1 (MQ=255)
  ccTCGCCATGTCGATCAGGGGCTGTCGCTGACGCt                                  <  1:5789607/34‑1 (MQ=255)
  ccTCGCCATGTCGATCAGGGGCTGTCGCTGACGCt                                  <  1:12071172/34‑1 (MQ=255)
   gatgtgcgctatcaaccagcgtccgtagatcgGCt                                  >  1:14541082‑M1/33‑35 (MQ=255)
   gatgtgcgctatcaaccagcgtccgtagatcgGCt                                  <  1:6930891‑M1/3‑1 (MQ=255)
   cTCGCCATGTCGATCAGGGGCTGTCGCTGACGCtt                                 <  1:2380891/35‑1 (MQ=255)
   cTCGCCATGTCGATCAGGGGCTGTCGCTGACGCtt                                 <  1:5298941/35‑1 (MQ=255)
   cTCGCCATGTCGATCAGGGGCTGGGGCTGGCGcgt                                 >  1:17495806/1‑33 (MQ=21)
    tCGCCATGTCGATCAGGGGCTGTCGCTGACGCttt                                <  1:2999120/35‑1 (MQ=255)
    tCGCCATGTCGATCAGGGGCTGTCGCTGACGCttt                                <  1:19753486/35‑1 (MQ=255)
    tCGCCATGTCGATCAGGGGCTGTCGCTGACGCttt                                <  1:10415563/35‑1 (MQ=255)
     tgtgcgctatcaaccagcgtccgtagatcgGCttt                                <  1:4659174‑M1/5‑1 (MQ=255)
      gtgcgctatcaaccagcgtccgtagatcgGctttg                               <  1:5676354‑M1/6‑2 (MQ=255)
      gtgcgctatcaaccagcgtccgtagatcgGCtttt                               <  1:13597825‑M1/6‑1 (MQ=255)
      gtgcgctatcaaccagcgtccgtagatcgGCtttt                               <  1:8654633‑M1/6‑1 (MQ=255)
      gCCATGTCGATCAGGGGCTGGGGCTGTGCGCtttt                               >  1:20526996/1‑35 (MQ=12)
       tgcgctatcaaccagcgtccgtagatcggctttgt                              <  1:7022865‑M1/7‑3 (MQ=255)
       tgcgctatcaaccagcgtccgtagatcgGCttttt                              <  1:5561833‑M1/7‑1 (MQ=255)
       ccATGTCGATCAGGGGCTGTCGCTGACGCtttttt                             <  1:5559187/35‑1 (MQ=255)
        gcgctatcaaccagcgtccgtagatcgGCtttttt                             <  1:509860‑M1/8‑1 (MQ=255)
        cATGTCGATCAGGGGCTGTCGCTGACGCttttttt                            <  1:9923643/35‑1 (MQ=255)
        cATGTCGATCAGGGGCTGTCGCTGACGCttttttt                            <  1:11587089/35‑1 (MQ=255)
         aTGTCGATCAGGGGCTGTCGCTGACGCTTTTTTTc                           <  1:14531397/35‑1 (MQ=255)
         aTGTCGATCAGGGGCTGTCGCTGACGCTTTTTTTc                           <  1:7323860/35‑1 (MQ=255)
         aTGTCGATCAGGGGCTGTCGCTGACGCTTTTTTTc                           <  1:8113430/35‑1 (MQ=255)
         aTGTCGATCAGGGGCTGTCGCTGACGCTTTTTTTc                           <  1:1413141/35‑1 (MQ=255)
          tGTCGATCAGGGGCTGTCGCTGACGCTTTTTTTcc                          <  1:15354135/35‑1 (MQ=255)
          gctatcaaccagcgtccgtagatcggcttttttgt                           <  1:18402055‑M1/10‑3 (MQ=255)
          gctatcaaccagcgtccgtagatcgGctttttttt                           <  1:17736070‑M1/10‑2 (MQ=255)
          gctatcaaccagcgtccgtagatcgGctttttttt                           <  1:16328580‑M1/10‑2 (MQ=255)
          gctatcaaccagcgtccgtagatcgGCTTTTTTTc                           <  1:13022735‑M1/10‑1 (MQ=255)
           gTCGATCAGGGGCTGTCGCTGACGCTTTTTTTccc                         <  1:18788950/35‑1 (MQ=255)
            tatcaaccagcgtccgtagatcggcttttttttcc                         <  1:4541546‑M1/12‑4 (MQ=255)
            tatcaaccagcgtccgtagatcgGCTTTTTTGccc                         <  1:9937222‑M1/12‑1 (MQ=255)
            tCGATCAGGGGCTGTCGCTGACGCTTTTTTTcccc                        <  1:2538265/35‑1 (MQ=255)
             cGATCAGGGGCTGTCGCTGACGCTTTTTTTCCCCg                       <  1:12102945/35‑1 (MQ=255)
             atcaaccagcgtccgtagatcgGCTTTTTTtccca                        <  1:2190693‑M1/13‑2 (MQ=255)
             atcaaccagcgtccgtagatcgGCTTTTTTTcccc                        <  1:2921361‑M1/13‑1 (MQ=255)
              naTCAGNGGCTGTCGCTGACGCTTTTTTTCCCCGa                      <  1:2597085/34‑1 (MQ=255)
              gATCAGGGGCTGTCGCTGACGCTTTTTTTCCCCGa                      <  1:6279932/35‑1 (MQ=255)
               aTCAGGGGCTGTCGCTGACGCTTTTTTTCCCCGAt                     <  1:8467369/35‑1 (MQ=255)
                tCAGGGGCTGTCGCTGACGCTTTTTTTCCCCGATa                    <  1:5549292/35‑1 (MQ=255)
                aaccagcgtccgtagatcgGCTTTTtttcccctat                     <  1:3875278‑M1/16‑4 (MQ=255)
                 cgggggCTGTACCTGACGCTTTTTTTCCCCGATAc                   <  1:6264628/33‑1 (MQ=25)
                 cAGGGGCTGTCGCTGACGCTTTTTTTCCCCGATAc                   <  1:19169115/35‑1 (MQ=255)
                 cAGGGGCTGTCGCTGACGCTTTTTTTCCCCGATAc                   <  1:3075921/35‑1 (MQ=255)
                 cAGGGGCTGTCGCTGACGCTTTTTTTCCCCGATAc                   <  1:7941513/35‑1 (MQ=255)
                 cAGGGGCTGTCGCTGACGCTTTTTTTCCCCGATAc                   <  1:12485131/35‑1 (MQ=255)
                 cAGGGGCTGTCGCTGACGCTTTTTTTCCCCGATAc                   <  1:20018945/35‑1 (MQ=255)
                  aGGGGCTGTCGCTGACGCTTTTTTTCCCCGATAcc                  <  1:7174496/35‑1 (MQ=255)
                  aGGGGCTGTCGCTGACGCTTTTTTTCCCCGATAcc                  <  1:18006160/35‑1 (MQ=255)
                   ggggCTGTCGCTGACGCTTTTTTTCCCCGATACCg                 <  1:7661909/35‑1 (MQ=255)
                   ggggCTGTCGCTGACGCTTTTTTTCCCCGATACCg                 <  1:6072103/35‑1 (MQ=255)
                   ggggCTGTCGCTGACGCTTTTTTTCCCCGATACCg                 <  1:8774745/35‑1 (MQ=255)
                    gggCTGTCGCTGACGCTTTTTTTCCCCGATACCGc                <  1:14338045/35‑1 (MQ=255)
                    gggCTGTCGCTGACGCTTTTTTTCCCCGATACCGc                >  1:772867/1‑35 (MQ=255)
                    gggCTGTCGCTGACGCTTTTTTTCCCCGATACCGc                <  1:9055301/35‑1 (MQ=255)
                    gggCTGTCGCTGACGCTTTTTTTCCCAGATACCGc                <  1:7497491/35‑1 (MQ=255)
                      gCTGTCGCTGACGCTTTTTTTCCCCGATACCGcca              >  1:11852591/1‑35 (MQ=255)
                      gCTGTCGCTGACGCTTTTTTTCCCCGATACCGcca              >  1:10759851/1‑35 (MQ=255)
                      gCTGTCGCTGACGCTTTTTTTCCCCGATACCCccc              >  1:3181569/1‑34 (MQ=255)
                       cTGTCGCTGACGCTTTTTTTCCCCGATACCGccac             >  1:3572517/1‑35 (MQ=255)
                        tGTCGCTTACGCTTTTTTTCCCCGATACCGccacc            >  1:9242909/1‑35 (MQ=255)
                        tGTCGCTGACGCTTTTTTTCCCCGATACCGccacc            >  1:17518036/1‑35 (MQ=255)
                        tGTCGCTGACGCTTTTTTTCCCCGATACCGccacc            >  1:8633871/1‑35 (MQ=255)
                        tGTCGCTGACGCTTTTTTTCCCCGATACCGacacc            <  1:17584463/35‑1 (MQ=255)
                         gTCGCTGACGCTTTTTTTCCCCGATACCGccacca           >  1:12065000/1‑35 (MQ=255)
                         gTCGCTGACGCTTTTTTTCCCCGATACCGccacca           >  1:17034178/1‑35 (MQ=255)
                         gTCGCTGACGCTTTTTTTCCCCGATACCGccacca           >  1:7723836/1‑35 (MQ=255)
                          tCGCTGACGCTTTTTTTCCCCGATACCGCcaccac          >  1:2782541/1‑35 (MQ=255)
                          tCGCTGACGCTTTTTTTCCCCGATACCGCcaccac          >  1:19018758/1‑35 (MQ=255)
                           cGCTGACGCTTTTTTTCCCCGATACCGCCACCACt         >  1:14835267/1‑35 (MQ=255)
                           cGCTGACGCTTTTTTTCCCCGATACCGCCACCACt         >  1:1512647/1‑35 (MQ=255)
                           cGCTGACGCTTTTTTTCCCCGATACCGCCACCACt         >  1:280353/1‑35 (MQ=255)
                             cTGACGCTTTTTTTCCCCGATACCGCCACCACTcg       >  1:6162651/1‑35 (MQ=255)
                             cTGACGCTTTTTTTCCCCGATACCGCCACCACTcg       >  1:18847462/1‑35 (MQ=255)
                              tGACGCTTTTTTTCCCCGATACCGCCACCACTcgc      >  1:14548464/1‑35 (MQ=255)
                               gACGCTTTTTTTCCCCGATACCGCCACCACTcgcg     >  1:1534489/1‑35 (MQ=255)
                               gACGCTTTTTTTCCCCGATACCGCCACCACTcgcg     >  1:19122671/1‑35 (MQ=255)
                               gACGCTTTTTTTCCCCGATACCGCCACCACTcgcg     >  1:10998011/1‑35 (MQ=255)
                                 aCGCTTTTTTTCCCCGATACCGCCACCACTCGCGa    >  1:131980/1‑35 (MQ=255)
                                   GCTTTTTTTCCCCGATACCGCCACCACTCGCGata  <  1:14911576‑M1/35‑1 (MQ=255)
                                   GCTTTTTTTCCCCGATACCGCCACCACTCGCGata  <  1:6927405‑M1/35‑1 (MQ=255)
                                   GCTTTTTTTCCCCGATACCGCCACCACTCGCGata  <  1:6813905‑M1/35‑1 (MQ=255)
                                   GCTTTTTTTCCCCGATACCGCCACCACTCGCGata  <  1:15139588‑M1/35‑1 (MQ=255)
                                   GCTTTTTTTCCCCGATACCGCCACCACTCGCCata  <  1:6815282‑M1/35‑1 (MQ=255)
                                   |                                  
CGACTCGCCATGTCGATCAGGGGCTGTCGCTGACGCTTTTTTTCCCCGATACCGCCACCACTCGCGATA  >  REL606/2698057‑2698125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.