New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1711816 =78 (0.760)21 (0.250) 4/40 NT 22.6% coding (188/816 nt) ydhO predicted lipoprotein
?REL606 = 2450890 79 (0.920)intergenic (‑182/+27) yfeA/alaX predicted diguanylate cyclase/tRNA‑Ala

Only 100 of 178 total aligned reads displayed.

ACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCT  >  REL606/1711782‑1711850
                                  |                                  
tacaaaagcggcaaaaagcagagacaaaaaacccc                                    >  1:11859613‑M1/35‑35 (MQ=255)
tacaaaagcggcaaaaagcagagacaaaaaacccc                                    >  1:10114827‑M1/35‑35 (MQ=255)
tacaaaagcggcaaaaagcagagacaaaaaacccc                                    >  1:6971690‑M1/35‑35 (MQ=255)
tacaaaagcggcaaaaagcagagacaaaaaacccc                                    >  1:9104615‑M1/35‑35 (MQ=255)
tacaaaagcggcaaaaagcagagacaaaaaacccc                                    <  1:1085841‑M1/1‑1 (MQ=255)
cccaccaAAAAGACCCAGAAAACAGCGAAAAAAgc                                    <  1:4099162/34‑1 (MQ=255)
cccaccaAAAAGACCCAGAAAACAGCGAAAAAAgc                                    <  1:3749853/34‑1 (MQ=255)
accaccAAAAAGACCCAGAAAACAGCGAAAAAAgc                                    >  1:17318677/1‑35 (MQ=255)
accaccAAAAAGACCCAGAAAACAGCGAAAAAAgc                                    >  1:10536220/1‑35 (MQ=255)
accaccAAAAAGACCCAGAAAACAGCGAAAAAAgc                                    >  1:1361217/1‑35 (MQ=255)
accacaAAAAAGACCCAGAAAACAGCGAAAAAAgc                                    <  1:3790287/35‑1 (MQ=255)
 ccaccaAAAAGACCCAGAAAACAGCGAAAAAAgcc                                   <  1:18549198/35‑1 (MQ=255)
 ccaccaAAAAGACCCAGAAAACAGCGAAAAAAgcc                                   <  1:19983376/35‑1 (MQ=255)
 ccaccaAAAAGACCCAGAAAACAGCGAAAAAAgcc                                   >  1:8166390/1‑35 (MQ=255)
 acaaaagcggcaaaaagcagagacaaaaaatcccc                                   >  1:18711594‑M1/34‑35 (MQ=255)
 acaaaagcggcaaaaagcagagacaaaaaaccccc                                   <  1:7889722‑M1/2‑1 (MQ=255)
 acaaaagcggcaaaaagcagagacaaaaaaccccc                                   <  1:14192284‑M1/2‑1 (MQ=255)
 acaaaagcggcaaaaagcagagacaaaaaaccccc                                   <  1:13156310‑M1/2‑1 (MQ=255)
  caaaagcggcaaaaagcagagacaaaaaacccCCg                                  >  1:11292616‑M1/33‑35 (MQ=255)
  caaaagcggcaaaaagcagagacaaaaaacccCCg                                  <  1:14094366‑M1/3‑1 (MQ=255)
  caaaagcggcaaaaagcagagacaaaaaacccCCg                                  >  1:14400591‑M1/33‑35 (MQ=255)
   aaaagctgcaaaaagcagagacaaaaaacccCCGc                                 <  1:11967168‑M1/4‑1 (MQ=255)
   aaaagcggcaaaaagcagagacaaaaaacccCCGc                                 <  1:6901862‑M1/4‑1 (MQ=255)
   aaaagcggcaaaaagcagagacaaaaaacccCCGc                                 <  1:1826543‑M1/4‑1 (MQ=255)
   aaaagcggcaaaaagcagagacaaaaaacccCCGc                                 <  1:10420586‑M1/4‑1 (MQ=255)
   aaaagcggcaaaaagcagagacaaaaaacccCCGc                                 >  1:12247156‑M1/32‑35 (MQ=255)
   aaaagcggcaaaaagcagagacaaaaaacccCCGc                                 <  1:12485322‑M1/4‑1 (MQ=255)
    ccaAAAAGACCCAGAAAACAGCGAAAAAAgccgcc                                >  1:9273840/1‑35 (MQ=255)
      aaaaaGACCCAGAAAACAGCGAAAAAAGCCGCCAg                              >  1:17851500/1‑35 (MQ=255)
       aaaaGACCCAGAAAACAGCGAAAAAAGCCGCCAGt                             >  1:4204879/1‑35 (MQ=255)
       aaaaGACCCAGAAAACAGCGAAAAAAGCCGCCAGt                             >  1:5112106/1‑35 (MQ=255)
       aaaaGACCCAGAAAACACCGAAAAAAGCCGCCAGt                             >  1:2778724/1‑35 (MQ=255)
        aaaGACCCAGAAAACAGCGAAAAAAGCCGCCAGTa                            >  1:12117662/1‑35 (MQ=255)
         aaGACCCAGAAAACAGCGAAAAAAGCCGCCAGTaa                           >  1:18727783/1‑35 (MQ=255)
         aaGACCCAGAAAACAGCGAAAAAAGCCGCCAGTaa                           >  1:16482668/1‑35 (MQ=255)
         aaGACCCAGAAAACAGCGAAAAAAGCCGCCAGTaa                           >  1:7178373/1‑35 (MQ=255)
           gACCCAGAAAACAGCGAAAAAAGCCGCCAGTaaaa                         >  1:3908225/1‑35 (MQ=255)
           gACCCAGAAAACAGCGAAAAAAGCCGCCAGTaaaa                         >  1:14553738/1‑35 (MQ=255)
            aCCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAg                        >  1:491871/1‑35 (MQ=255)
             cccAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGt                       >  1:18873707/1‑35 (MQ=255)
             cccAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGt                       >  1:7434326/1‑35 (MQ=255)
              ccAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTa                      >  1:3993354/1‑35 (MQ=255)
              ccAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTa                      >  1:19199356/1‑35 (MQ=255)
              ccAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTa                      >  1:11678068/1‑35 (MQ=255)
               cAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTAc                     >  1:9075/1‑35 (MQ=255)
                aGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACg                    >  1:16067119/1‑35 (MQ=255)
                aGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACg                    >  1:3946188/1‑35 (MQ=255)
                 gAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGa                   >  1:16295186/1‑35 (MQ=255)
                  aaaaCAGCGAAAAAAGCCGCCAGTAAAAGTACGAc                  >  1:11940257/1‑35 (MQ=255)
                  aaaaCAGCGAAAAAAGCCGCCAGTAAAAGTACGAc                  >  1:7627611/1‑35 (MQ=255)
                   aaaCAGCGAAAAAAGCCGCCAGTAAAAGTACGAcc                 >  1:4669436/1‑35 (MQ=255)
                    aaCAGCGAAAAAAGCCGCCAGTAAAAGTACGACCa                >  1:4927974/1‑35 (MQ=255)
                    aaCAGCGAAAAAAGCCGCCAGTAAAAGTACGACCa                >  1:15101659/1‑35 (MQ=255)
                    aaCAGCGAAAAAAGCCGCCAGTAAAAGTACGACCa                >  1:8350708/1‑35 (MQ=255)
                    aaCAGCGAAAAAAGCCGCCAGTAAAAGTAAGACCa                >  1:19561094/1‑35 (MQ=255)
                     aCAGCGAAAAAAGCCGCCAGTAAAAGTACGACCaa               >  1:5810728/1‑35 (MQ=255)
                     aCAGCGAAAAAAGCCGCCAGTAAAAGTACGACCaa               >  1:3483132/1‑35 (MQ=255)
                     aCAGCGAAAAAAGCCGCCAGTAAAAGTACGACAaa               >  1:6887468/1‑35 (MQ=255)
                      cAGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaa              >  1:9800568/1‑35 (MQ=255)
                      cAGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaa              >  1:2151446/1‑35 (MQ=255)
                      cAGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaa              >  1:19779522/1‑35 (MQ=255)
                      aacaaaaaccccCCGCCAGTAAAAGTACGACCaaa              >  1:18892336‑M1/13‑35 (MQ=255)
                      aaaaaaaaacccCCGCCAGTAAAAGTACGACCaaa              >  1:15917235‑M1/13‑35 (MQ=255)
                       gaaaaaaacccCCGCCAGTAAAAGTACGACCaaaa             >  1:2390807‑M1/12‑35 (MQ=255)
                       aaaaaaaacccCCGCCAGTAAAAGTACGACCaaaa             >  1:10109490‑M1/12‑35 (MQ=255)
                       aGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaaa             >  1:11196861/1‑35 (MQ=255)
                       aGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaaa             >  1:16806814/1‑35 (MQ=255)
                       aGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaaa             >  1:17654817/1‑35 (MQ=255)
                       aGCGAAAAAAGCCGCCAGTAAAAGTACGACCaaaa             >  1:17367526/1‑35 (MQ=255)
                        agaaaaacccCCGCCAGTAAAAGTACGACCAAAAg            >  1:18019015‑M1/11‑35 (MQ=255)
                        aaaaaaacccCCGCCAGTAAAAGTACGACCAAAAg            >  1:11446062‑M1/11‑35 (MQ=255)
                        aaaaaaacccCCGCCAGTAAAAGTACGACCAAAAg            >  1:17592448‑M1/11‑35 (MQ=255)
                         cGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGc           >  1:6092394/1‑35 (MQ=255)
                         aaaaaacccCCGCCAGTAAAAGTACGACCAAAAGc           >  1:2061880‑M1/10‑35 (MQ=255)
                         aaaaaacccCCGCCAGTAAAAGTACGACCAAAAGc           >  1:12825964‑M1/10‑35 (MQ=255)
                         aaaaaaaccCCGCCAGTAAAAGTACGACCAAAAGc           >  1:8998147‑M1/10‑35 (MQ=255)
                          gAAAAAAGCCGCCATTAAAAGTACGACCAAAAGCa          >  1:16881824/1‑35 (MQ=255)
                          gAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCa          >  1:16143023/1‑35 (MQ=255)
                           aaaaaaGCCGCCAGTAAAAGTACGACCAAAAGCaa         >  1:1571311/1‑35 (MQ=255)
                            aaaaccCCGCCAGTAAAAGTACGACCAAAAGCaaa        >  1:10674026‑M1/7‑35 (MQ=255)
                            aaaaaGCCGCCAGTAAAAGTACGACCAAAAGCaaa        >  1:7368372/1‑35 (MQ=255)
                             acaccCCGCCAGTAAAAGTACGACCAAAAGCaaaa       >  1:2284617‑M1/6‑35 (MQ=255)
                             aaaaGCCGCCAGTAAAAGTACGACCAAAAGCaaaa       >  1:9903574/1‑35 (MQ=255)
                             aaaaGCCGCCAGTAAAAGTACGACCAAAAGCaaaa       >  1:1777618/1‑35 (MQ=255)
                              caccCCGCCAGTAAAAGTACGACCAAAAGCAAAAc      >  1:6628391‑M1/5‑35 (MQ=255)
                              aaccCCGCCAGTAAAAGTACGACCAAAAGCAAAAc      >  1:14439492‑M1/5‑35 (MQ=255)
                              aaaGCCGCCAGTAAAAGTACGACCAAAAGCAAAAc      >  1:8595281/1‑35 (MQ=255)
                              aaaGCCGCCAGTAAAAGTACGACCAAAAGCAAAAc      >  1:19726489/1‑35 (MQ=255)
                               cccCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc     >  1:15682730‑M1/4‑35 (MQ=255)
                               cccCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc     >  1:13388816‑M1/4‑35 (MQ=255)
                               cccCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc     >  1:19009382‑M1/4‑35 (MQ=255)
                               cccCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc     >  1:6335699‑M1/4‑35 (MQ=255)
                               accCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc     >  1:1467716‑M1/4‑35 (MQ=255)
                               aaGCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc     >  1:5415421/1‑35 (MQ=255)
                               aaGCCGCCAGTAAAAGTACGACCAAAAGCAAAAcc     >  1:4860163/1‑35 (MQ=255)
                                aGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCg    >  1:719900/1‑35 (MQ=255)
                                aGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCg    >  1:6048659/1‑35 (MQ=255)
                                 gccgccAGTAAAAGTACGACCAAAAGCAAAACCGc   >  1:8890147/1‑35 (MQ=255)
                                 gccgccAGTAAAAGTACGACCAAAAGCAAAACCGc   >  1:19249157/1‑35 (MQ=255)
                                 gccgccAGTAAAAGTACGACCAAAAGCAAAACCGc   >  1:19389175/1‑35 (MQ=255)
                                  |                                  
ACCACCAAAAAGACCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGACCAAAAGCAAAACCGCT  >  REL606/1711782‑1711850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.