New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422590 =83 (0.810)4 (0.040) 4/46 NT 6.1% intergenic (‑277/+185) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter
?REL606 801538 = 45 (0.440)coding (346/1290 nt) bioA adenosylmethionine‑8‑amino‑7‑oxononanoate transaminase

CAGTACTGCAACGCCATTTTCATCGCCACTTCCACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCAC  >  REL606/801504‑801572
                                  |                                  
cAGTACTGCAACGCCATTTTCATCGCCACTTCCAc                                    >  1:15654729/1‑35 (MQ=255)
cAGTACTGCAACGCCATTTTCATCGCCACTTCCAc                                    >  1:6928569/1‑35 (MQ=255)
cAGTACTGCAACGCCATTTTCATCGCCACTTCCAc                                    >  1:10523084/1‑35 (MQ=255)
cAGTACTGCAACGCCATTTTCATCGCCACTTCCAc                                    >  1:10616790/1‑35 (MQ=255)
cAGTACTGCAACGCCATTTTCATCGCCACTTCCAc                                    >  1:11369716/1‑35 (MQ=255)
cAGTACTGCAACGCCATTTTCATCGCCACTTCCAc                                    >  1:3620892/1‑35 (MQ=255)
 aGTACTGCAACGCCATTTTCATCGCCACTTCCAcc                                   >  1:13738452/1‑35 (MQ=255)
 aGTACTGCAACGCCATTTTCATCGCCACTTCCAcc                                   >  1:10160225/1‑35 (MQ=255)
 aGTACTGCAACGCCATTTTCATCGCCACTTCCAcc                                   >  1:2667916/1‑35 (MQ=255)
 aGTACTGCAACGCCATTTTCATCGCCACTTCCAcc                                   >  1:10597563/1‑35 (MQ=255)
 aGTACTGCAACGCCATTTTCATCGCCACTTCCAcc                                   >  1:6163327/1‑35 (MQ=255)
 aGTACTGCAACGCCATTTTCATCGCCACTTCCAcc                                   >  1:11016247/1‑35 (MQ=255)
  gTACTGCAACGCCATTTTCATCGCCACTTCCACCg                                  >  1:18745468/1‑35 (MQ=255)
  gTACTGCAACGCCATTTTCATCGCCACTTCCACCg                                  >  1:3673131/1‑35 (MQ=255)
  gTACTGCAACGCCATTTTCATCGCCACTTCCACCg                                  >  1:9903144/1‑35 (MQ=255)
   tACTGCAACGCCATTTTCATCGCCACTTCCACCGc                                 >  1:15085260/1‑35 (MQ=255)
    aCTGCAACGCCATTTTCATCGCCACTTCCACCGCt                                >  1:2181435/1‑35 (MQ=255)
    aCTGCAACGCCATTTTCATCGCCACTTCCACCGCt                                >  1:19574749/1‑35 (MQ=255)
     cTGCAACGCCATTTTCATCGCCACTTCCACCGCTa                               >  1:5402326/1‑35 (MQ=255)
     cTGCAACGCCATTTTCATCGCCACTTCCACCGCTa                               >  1:8791037/1‑35 (MQ=255)
     cTGCAACGCCATTTTCATCGCCACTTCCACCGCTa                               >  1:19492587/1‑35 (MQ=255)
     cTGCAACGCCATTTTCATCGCCACTTCCACCGCTa                               >  1:9867777/1‑35 (MQ=255)
     cTGCAACGCCATTTTCATCGCCACTTCCACCGCTa                               >  1:1761402/1‑35 (MQ=255)
      tGCAACGCCATTTTCATCGCCACTTCCACCGCTAc                              >  1:6650289/1‑35 (MQ=255)
       gCAACGCCATTTTCATCGCCACTTCCACCGCTACg                             >  1:6109112/1‑35 (MQ=255)
       gCAACGCCATTTTCATCGCCACTTCCACCGCTACg                             >  1:16657696/1‑35 (MQ=255)
       gCAACGCCATTTTCATCGCCACTTCCACCGCTACg                             >  1:1643837/1‑35 (MQ=255)
        cAACGCCATTTTCATCGCCACTTCCACCGCTACgg                            >  1:999373/1‑35 (MQ=255)
        cAACGCCATTTTCATCGCCACTTCCACCGCTACga                            >  1:3543992/1‑34 (MQ=255)
         aaCGCCATTTTCATCGCCACTTCCACCGCTACGGa                           >  1:10258807/1‑35 (MQ=255)
         aaCGCCATTTTCATCGCCACTTCCACCGCTACGGa                           >  1:12684177/1‑35 (MQ=255)
          aCGCCATTTTCATCGCCACTTCCACCGCTACGGaa                          >  1:10228309/1‑35 (MQ=255)
          aCGCCATTTTCATCGCCACTTCCACCGCTACGGaa                          >  1:4309888/1‑35 (MQ=255)
             ccATTTTCATCGCCACTTCCACCGCTACGGAACCg                       >  1:1225903/1‑35 (MQ=255)
              cATTTTCATCGCCGCTTCCACCGCTACGGAACCgg                      >  1:9768318/1‑35 (MQ=255)
              cATTTTCATCGCCACTTCCACCGCTACGGAACCgg                      >  1:760124/1‑35 (MQ=255)
              cATTTTCATCGCCACTTCCACCGCTACGGAACCgg                      >  1:11321575/1‑35 (MQ=255)
               aTTTTCATCGCCACTTCCACCGCTACGGAACCGGa                     >  1:10075031/1‑35 (MQ=255)
               aTTTTCATCGCCACTTCCACCGCTACGGAACCGGa                     >  1:10496130/1‑35 (MQ=255)
               aTTTTCATCGCCACTTCCACCGCTACGGAACCGGa                     >  1:12768571/1‑35 (MQ=255)
               aTTTTCATCGCCACTTCCACCGCTACGGAACCGGa                     >  1:4199063/1‑35 (MQ=255)
                ttttCATCGCCACTTCCACCGCTACGGAACCGGAg                    >  1:13665665/1‑35 (MQ=255)
                  ttttccccccctccccCCGCTACGGAACCGGAGTc                  <  1:6554989‑M2/19‑1 (MQ=255)
                   tCATCGCCACTTCCACCGCTACGGAACCGGAGTcc                 >  1:11210773/1‑35 (MQ=255)
                   tCATCGCCACTTCCACCGCTACGGAACCGGAGTcc                 >  1:13706294/1‑35 (MQ=255)
                    ttccccccctccccCCGCTACGGAACCGGAGTCcg                <  1:9579743‑M2/21‑1 (MQ=255)
                    cATCGCCACTTCCACCGCTACGGAACCTGAGTCcg                >  1:2502301/1‑35 (MQ=255)
                    cATCGCCACTTCCACCGCTACGGAACCGGAGTCcg                >  1:4231198/1‑35 (MQ=255)
                     tccGCCCCTCCCCCCGCTACGGAACCGGAGTCcgc               <  1:20509822/33‑1 (MQ=21)
                     aTCGCCACTTCCACCGCTACGGAACCTGAGTCcgc               >  1:9124052/1‑35 (MQ=255)
                      tCGCCACTTCCACCGCTACGGAACCGGAGTCcgcg              >  1:10872373/1‑35 (MQ=255)
                      cccccACTTCCACCGCTACGGAACCGGAGTCcgcg              <  1:16199389/32‑1 (MQ=255)
                       cGCCCCTCCCCCCGCTACGGAACCGGAGTCCGCga             <  1:10907691/35‑1 (MQ=25)
                       cGCCACTTCCACCGCTACGGAACCGGAGTCCGCga             >  1:15208091/1‑35 (MQ=255)
                       cGCCACTTCCACCGCTACGGAACCGGAGTCCGCga             >  1:9582896/1‑35 (MQ=255)
                       cGCCACTCCCCCCGCTACGGAACCGGAGTCCGCga             <  1:5277023/35‑1 (MQ=38)
                        gCCACTTCCACCGCTACGGAACCGGAGTCCGCgag            >  1:10205284/1‑35 (MQ=255)
                        ccccctccccCCGCTACGGAACCGGAGTCCGCgag            <  1:18478999‑M2/25‑1 (MQ=255)
                         cccctccccCCGCTACGGAACCGGAGTCCGCgaga           <  1:4595455‑M2/26‑1 (MQ=255)
                         ccACTTCCACCGCTACGGAACCGGAGTCCGCgaga           >  1:9288877/1‑35 (MQ=255)
                         ccACTTCCACCGCTACGGAACCGGAGTCCGCgaga           >  1:8523982/1‑35 (MQ=255)
                         ccACTTCCACCGCTACGGAACCGGAGTCCGCgaga           >  1:15559060/1‑35 (MQ=255)
                          cACTTCCACCGCTACGGAACCGGAGTCCGCGAGaa          >  1:14652567/1‑35 (MQ=255)
                          cACTTCCACCGCTACGGAACCGGAGTCCGCGAGaa          >  1:26719/1‑35 (MQ=255)
                           cccccccCCGCTACGGAACCGGAGTCCGCGAGaaa         <  1:12677019‑M2/28‑1 (MQ=255)
                           aCTTCCACCGCTACGGAACCGGAGTCCGCGAGaaa         >  1:11970712/1‑35 (MQ=255)
                            cTTCCACCGCTACGGAACCGGAGTCCGCGAGaaaa        >  1:14634531/1‑35 (MQ=255)
                            cTTCCACCGCTACGGAACCGGAGTCCGCGAGaaaa        >  1:19382225/1‑35 (MQ=255)
                             ttcccCCGCTACGGAACCGGAGTCCGCGAGaaaaa       <  1:3609099‑M2/30‑1 (MQ=255)
                             ttCCACCGCTACGGAACCGGAGTCCGCGAGaaaaa       >  1:17589259/1‑35 (MQ=255)
                             ttCCACCGCTACGGAACCGGAGTCCGCGAGaaaaa       >  1:11287659/1‑35 (MQ=255)
                              tCCACCGCTACGGAACCGGAGTCCGCGAGAAAAAc      >  1:6349808/1‑35 (MQ=255)
                              ctccCCGCTACGGAACCGGAGTCCGCGAGAAAAAc      <  1:1149238‑M2/31‑1 (MQ=255)
                              ccccCCGCTACGGAACCGGAGTCCGCGAGAAAAAc      <  1:17464988‑M2/31‑1 (MQ=255)
                              ccccCCGCTACGGAACCGGAGTCCGCGAGAAAAAc      <  1:12184170‑M2/31‑1 (MQ=255)
                              ccccCCGCTACGGAACCGGAGTCCGCGAGAAAAAc      <  1:18608617‑M2/31‑1 (MQ=255)
                              ccccCCGCTACGGAACCGGAGTCCGCGAGAAAAAc      <  1:6911348‑M2/31‑1 (MQ=255)
                              cccACCGCTACGGAACCGGAGTCCGCGAGAAAAAc      <  1:11222942/34‑1 (MQ=255)
                              ccacCCGCTACGGAACCGGAGTCCGCGAGAAAAAc      <  1:12872165‑M2/31‑1 (MQ=255)
                                ccCCGCTACGGAACCGGAGTCCGCGAGAAAAACGc    <  1:6223005‑M2/33‑1 (MQ=255)
                                cACCGCTACGGAACCGGAGTCCGCGAGAAAAACGc    >  1:7234574/1‑35 (MQ=255)
                                cACCGCTACGGAACCGGAGTCCGCGAGAAAAACGc    >  1:9699965/1‑35 (MQ=255)
                                cACCGCTACGGAACCGGAGTCCGCGAGAAAAACGc    >  1:18895556/1‑35 (MQ=255)
                                 cCCGCTACGGAACCGGAGTCCGCGAGAAAAACGCa   <  1:18668188‑M2/34‑1 (MQ=255)
                                 aCCGCTACGGAACCGGAGTCCGCGAGAAAAACGCa   >  1:5799777/1‑35 (MQ=255)
                                 aCCGCTACGGAACCGGAGTCCGCGAGAAAAACGCa   <  1:5723228/35‑1 (MQ=255)
                                  ccGCTACGTAACCGGAGTCCGCTAGAAAAACGCAc  >  1:18784488/1‑35 (MQ=38)
                                  ccGCTACGGAACCGGAGTCCGCGAGAAAAACGCAc  <  1:6431789/35‑1 (MQ=255)
                                  ccGCTACGGAACCGGAGTCCGCGAGAAAAACGCAc  >  1:12680897/1‑35 (MQ=255)
                                  ccGCTACGGAACCGGAGTCCGCGAGAAAAACGCAc  >  1:17617290/1‑35 (MQ=255)
                                  |                                  
CAGTACTGCAACGCCATTTTCATCGCCACTTCCACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCAC  >  REL606/801504‑801572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.