New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3483684 =62 (0.600)11 (0.140) 5/36 NT 15.9% coding (2000/2706 nt) malT transcriptional regulator MalT
?REL606 = 3677027 70 (0.910)coding (478/987 nt) yiaO predicted transporter

TCCGGTTTAGCCGTATGACGCAACCAGTTGGCAGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3483723‑3483684
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGGTTTTAACCGGTGCGCGCGAGTTGGTGACATC  <  REL606/3677027‑3676994
                                                                          
TCCGGTTTAGCCGTATGACGCAACCAGTTGGCAGC                                         >  1:18600328/1‑35
TCCGGTTTAGCCGTATGACGCAACCAGTTGGCAGC                                         <  1:17942491/35‑1
TCCGGTTTAGCCGTATGACGCAACCAGTTGGCAGC                                         <  1:1787025/35‑1
TCCGGTTTAGCCGTATGACGCAACCAGTTGGCAGC                                         <  1:2105234/35‑1
TCCGGTTTAGCCGTATGACGCAACCAGTTGGCAGC                                         <  1:5570324/35‑1
TCCGGTTTAGCCGTATGACGCAACCAGTTGGCAGC                                         <  1:6418676/35‑1
TCCGGTTTAGCCGTATGACGCAACCAGTTGGCAGC                                         <  1:6686800/35‑1
TCCGGTTTAGCCGTATGACGCAACCAGTTGGCAGC                                         <  1:9851235/35‑1
 CCGGTTTAGCCGTATGACGCAACCAGTTGGCAGCG                                        >  1:11507432/1‑35
 CCGGTTTAGCCGTATGACGCAACCAGTTGGCAGCG                                        <  1:1166240/35‑1
 CCGGTTTAGCCGTATGACGCAACCAGTTGGCAGCG                                        <  1:10448387/35‑1
 CCGGTTTAGCCGTATGACGCAACCAGTTGGCAGCG                                        >  1:5737224/1‑35
 CCGGTTTAGCCGTATGACGCAACCAGTTGGCAGCG                                        <  1:9717334/35‑1
 CCGGTTTAGCCGTATGACGCAACCAGTTGGCAGCG                                        <  1:16903136/35‑1
 CCGGTTTAGCCGTATGACGCAACCAGTTGGCAGCG                                        <  1:2830500/35‑1
  CGGTTTAGCCGTATGACGCAACCAGTTGGCAGCGG                                       >  1:10309629/1‑35
  CGGTTTAGCCGTATGACGCAACCAGTTGGCAGCGG                                       >  1:6085512/1‑35
  CGGTTTAGCCGTATGACGCAACCAGTTGGCAGCGG                                       <  1:4302193/35‑1
  CGGTTTAGCCGTATGACGCAACCAGTTGGCAGCGG                                       >  1:3198676/1‑35
   GGTTTAGCCGTATGACGCAACCAGTTGGCAGCGGC                                      <  1:9801273/35‑1
   GGTTTAGCCGTATGACGCAACCAGTTGGCAGCGGC                                      <  1:17667895/35‑1
   GGTTTAGCCGTATGACGCAACCAGTTGGCAGCGGC                                      <  1:2479392/35‑1
   GGTTTAGCCGTATGACGCAACCAGTTGGCAGCGGC                                      <  1:3233275/35‑1
   GGTTTAGCCGTATGACGCAACCAGTTGGCAGCGGC                                      >  1:3636077/1‑35
   GGTTTAGCCGTATGACGCAACCAGTTGGCAGCGGC                                      >  1:4268368/1‑35
   GGTTTAGCCGTATGACGCAACCAGTTGGCAGCGGC                                      <  1:10935758/35‑1
    GTTTAGCCGTATGACGCAACCAGTTGGCAGCGGCG                                     >  1:3694171/1‑35
    GTTTAGCCGTATGACGCAACCAGTTGGCAGCGGCG                                     <  1:17003596/35‑1
    GTTTAGCCGTATGACGCAACCAGTTGGCAGCGGCG                                     >  1:12335649/1‑35
    GTTTAGCCGTATGACGCAACCAGTTGGCAGCGGCG                                     <  1:1215117/35‑1
    GTTTAGCCGTATGACGCAACCAGTTGGCAGCGGCG                                     <  1:19313604/35‑1
    GTTTAGCAGTATGACGCAACCAGTTGGCAGCGGCG                                     <  1:17488682/35‑1
     TTTAGCCGTATGACGCAACCAGTTGGCAGCGGGGG                                    >  1:7396767/1‑35
     TTTAGCCGTATGACGCAACCAGTTGGCAGCGGCGG                                    >  1:15468723/1‑35
     TTTAGCCGTATGACGCAACCAGTTGGCAGCGGCGG                                    <  1:17612524/35‑1
      TTAGCCGTATGACGCAACCAGTTGGCAGCGGCGGG                                   >  1:20066823/1‑35
      TTAGCCGTATGACGCAACCAGTTGGCAGCGGCGGG                                   >  1:9010467/1‑35
      TTAGCCGTATGACGCAACCAGTTGGCAGCGGCGGG                                   >  1:19057205/1‑35
      TTAGCCGTATGACGCAACCAGTTGGCAGCGGCGGG                                   >  1:1806318/1‑35
       TAGCCGTATGACGCAACCAGTTGGCAGCGGCGGGG                                  >  1:7885428/1‑35
       TAGCCGTATGACGCAACCAGTTGGCAGCGGCGGGG                                  >  1:780707/1‑35
       TAGCCGTATGACGCAACCAGTTGGCAGCGGCGGGG                                  >  1:6201158/1‑35
        AGCCGTATGACGCAACCAGTTGGCAGCGGCGGGGG                                 >  1:813578/1‑35
        AGCCGTATGACGCAACCAGTTGGCAGCGGCGGGGG                                 >  1:13753573/1‑35
        AGCCGTATGACGCAACCAGTTGGCAGCGGCGGGGG                                 >  1:15908689/1‑35
         GCCGTATGACGCAACCAGTTGGCAGCGGCGGGGGT                                >  1:9440539/1‑35
         GCCGTATGACGCAACCAGTTGGCAGCGGCGGGGGT                                >  1:6398681/1‑35
          CCGTATGACGCAACCAGTTGGCAGCGGCGGGGTTT                               >  1:17829443/1‑35
          CCGTATGACGCAACCAGTTGGCAGCGGCGGGGTTT                               >  1:7639492/1‑35
          CCGTATGACGCAACCAGTTGGCAGCGGCGGGGGTg                               >  1:19824252/1‑34
          CCGTATGACGCAACCAGTTGGCAGCGGCGGGGGTa                               >  1:10875061/1‑34
           CGTATGACGCAACCAGTTGGCAGCGGCGGGGGTca                              >  1:616238/1‑33
           CGTATGACGCAACCAGTTGGCAGCGGCGGGGGTTT                              >  1:17509334/1‑35
            GTATGACGCAACCAGTTGGCAGCGGCGGGGGTgtc                             >  1:9061215/1‑32
            GTATGACGCAACCAGTTGGCAGCGGCGGGGGTTTT                             >  1:12166284/1‑35
            GTATGACGCAACCAGTTGGCAGCGGCGGGGGTTTT                             >  1:3680537/1‑35
            GTATGACGCAACCAGTTGGCAGCGGCGGGGGTGTT                             >  1:16284933/1‑35
             TATGACGCAACCAGTTGGCAGCGGCTGGGGTTTTA                            >  1:4886519/1‑35
             TATGACGCAACCAGTTGGCAGCGGCGGGGTTTTTt                            >  1:6819233/1‑34
             TATGACGCAACCAGTTGGCAGCGGCGGGGGTTTca                            >  1:20612035/1‑33
              ATGACGCAACCAGTTGGCAGCGGCGGGGGTTTTca                           >  1:3864093/1‑33
              ATGACGCAACCAGTTGGCAGCGGCGGGGGTTTTAc                           >  1:11025177/1‑34
               TGACGCAACCAGTTGGCAGCGGCGGGGGTTTTAAC                          >  1:3038184/1‑35
                GACGCAACCAGTTGGCAGCGGCGGGGTTTTTAACC                         >  1:2638936/1‑35
                                  CGGCGGGGGTTTTAACCGGTGCGCGCGAGTTGGTG       <  1:10345779/35‑1
                                  CGGCGGGGGTTTTAACCGGTGCGCGCGAGTTGGTG       <  1:11596080/35‑1
                                  CGGCGGGGGTTTTAACCGGTGCGCGCGAGTTGGTG       <  1:3545071/35‑1
                                  CGGCGGGGGTTTTAACCGGTGCGCGCGAGTTGGTG       <  1:13833425/35‑1
                                   GGCGGGGGTTTTAACCGGTGCGCGCGAGTTGGTGA      <  1:6087948/35‑1
                                   GGCGGGGGTTTTAACCGGTGCGCGCGAGTTGGTGA      <  1:9758810/35‑1
                                   GGCGGGGGTTTTAACCGGTGCGCGCGAGTTGGGGA      >  1:11523206/1‑35
                                    GCGGGGGTTTTAACCGGTGCGCGCGAGTTGGTGAC     <  1:15511761/35‑1
                                    GCGGGGGTTTTAACCGGTGCGCGCGAGTTGGTGAC     >  1:3766953/1‑35
                                    GCGGGGGTTTTAACCGGTGCGCGCGAGTTGGTGAC     <  1:14050864/35‑1
                                    GCGGGGGTTTTAACCGGTGCGCGCGAGTTGGTGAC     <  1:10306367/35‑1
                                     CGGGGGTTTTAACCGGTGCGCGCGAGTTGGTGACA    >  1:14624145/1‑35
                                     CGGGGGTTTTAACCGGTGCGCGCGAGTTGGTGACA    <  1:8788407/35‑1
                                     CGGGGGTTTTAACCGGTGCGCGCGAGTTGGTGACA    <  1:8528177/35‑1
                                     CGGGGGTTTTAACCGGTGCGCGCGAGTTGGGGACA    >  1:11263638/1‑35
                                     CGGGGGTTTTAACCGGTGCGCGCGAGTTGGGGACA    >  1:18233792/1‑35
                                     CGGGGGTTTTAACCGGTGCGAGCGAGTTGGTGACA    <  1:17529718/35‑1
                                      GGGGGTTTTAACCGGTGCGCGCGAGTTGGTGGCAT   >  1:19759098/1‑35
                                      GGGGGTTTTAACCGGTGCGCGCGAGTTGGTGACAT   <  1:19209039/35‑1
                                      GGGGGTTTTAACCGGTGCGCGCGAGTTGGTGACAT   <  1:19071302/35‑1
                                      GGGGGTTTTAACCGGTGCGCGCGAGTTGGGGACAT   >  1:12579550/1‑35
                                       GGGGTTTTAACCGGTGCGCGCGAGTTGGTGACATC  >  1:8136435/1‑35
                                       GGGGTTTTAACCGGTGCGCGCGAGTTGGTGACATC  <  1:7589556/35‑1
                                       GGGGTTTTAACCGGTGCGCGCGAGTTGGTGACATC  <  1:14999907/35‑1
                                                                          
TCCGGTTTAGCCGTATGACGCAACCAGTTGGCAGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3483723‑3483684
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGGTTTTAACCGGTGCGCGCGAGTTGGTGACATC  <  REL606/3677027‑3676994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.