New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 105493386 (0.840)11 (0.120) 4/44 NT 9.8% coding (103/1545 nt) appC cytochrome bd‑II oxidase, subunit I
?REL606 = 3766502 123 (1.310)coding (1206/1206 nt) gltS glutamate transporter

Only 100 of 215 total aligned reads displayed.

AGCGTTTCCGGTTCCTTCCGACGCTTTTTCATTTTTAACCGGCAAAAATCGGCAACATTAAATACAGCT  >  REL606/3766468‑3766536
                                  |                                  
aGCGTTTCCGGTTCCTTCCGACGCTTTTTCAtttt                                    <  1:16644274/35‑1 (MQ=255)
 gCGTTTCCGGTTCCTTCCGACGCTTTTTCATTTTt                                   <  1:9044338‑M2/35‑2 (MQ=255)
 gCGTTTCCGGTTCCTTCCGACGCTTTTTCATTTTt                                   <  1:16745864‑M2/35‑2 (MQ=255)
 gCGTTTCCGGTTCCTTCCGACGCTTTTTCATTTTt                                   <  1:3987933‑M2/35‑2 (MQ=255)
   gTTTCCGGTTCCTTCCGACGCTTTTTCATTTTTaa                                 >  1:8876458/1‑35 (MQ=255)
    tttCCGGTTCCTTCCGACGCTTTTTCATTTTTAAc                                <  1:17425908/35‑1 (MQ=255)
    tttCCGGTTCCTTCCGACGCTTTTTCATTTTTAAc                                <  1:19461776/35‑1 (MQ=255)
    tttCCGGTTCCTTCCGACGCTTTTTCATTTTTAAc                                <  1:521381/35‑1 (MQ=255)
    tttCCGGTTCCTTCCGACGCTTTTTCATTTTTAAc                                <  1:9692027/35‑1 (MQ=255)
    tttCCGGTTCCTTCCGACGCTTTTTCATTTTTAAc                                <  1:10970421/35‑1 (MQ=255)
     ttCCGGTTCCTTCCGACGCTTTTTCATTTTTAAcc                               >  1:6850728/1‑35 (MQ=255)
      tCCGGTTCCTTCCGACGCTTTTTCATTTTTAACCg                              >  1:8424779/1‑35 (MQ=255)
      tCCGGTTCCTTCCGACGCTTTTTCATTTTTAACCg                              <  1:13582589/35‑1 (MQ=255)
      tCCGGTTCCTTCCGACGCTTTTTCATTTTTAACCg                              >  1:14091225/1‑35 (MQ=255)
       ccGGTTCCTTCCGACGCTTTTTCATTTTTAACAgg                             <  1:8249268/35‑1 (MQ=255)
        cGGTTCCTTCCGACGCTTTTTCATTTTTAACCGGc                            >  1:5496933/1‑35 (MQ=255)
        cGGTTCCTTCCGACGCTTTTTCATTTTTAACCGGc                            <  1:17798457/35‑1 (MQ=255)
         ggTTCCTTCCGACGCTTTTTCATTTTTNACAGGCa                           <  1:17895122/35‑1 (MQ=255)
         ggTTCCTTCCGACGCTTTTTCATTTTTAACCGGCa                           >  1:18194791/1‑35 (MQ=255)
         ggTTCCTTCCGACGCTTTTTCATTTTTAACCGGCa                           <  1:7137794/35‑1 (MQ=255)
          gTTCCTTCCGACGCTTTTTCATTTTTAACCGGCaa                          <  1:4641937/35‑1 (MQ=255)
           ttccttccGACGCTTTTTCATTTTTAACCGGCaaa                         >  1:13412031/1‑35 (MQ=255)
           ttccttccGACGCTTTTTCATTTTTAACCGGCaaa                         <  1:8327446/35‑1 (MQ=255)
           ttccttccGACGCTTTTTCATTTTTAACCGGCaaa                         <  1:11969692/35‑1 (MQ=255)
            tccttccGACGCTTTTTCATTTTTAACCGGCaaaa                        <  1:2159938/35‑1 (MQ=255)
            tccttccGACGCTTTTTCATTTTTAACCGGCaaaa                        >  1:1939334/1‑35 (MQ=255)
            tccttccGACGCTTTTTCATTTTTAACCGGCaaaa                        >  1:8113817/1‑35 (MQ=255)
            gccttccGACGCTTTTTCATTTTTAACCGGCaaaa                        <  1:14298/34‑1 (MQ=255)
             ccttccGACGCTTTTTCATTTTTAACCGGCaaaaa                       <  1:3190375/35‑1 (MQ=255)
             ccttccGACGCTTTTTCATTTTTAACCGGCaaaaa                       >  1:1666661/1‑35 (MQ=255)
               ttccGACGCTTTTTTATTTTTAACCGGCAAAAATc                     >  1:7946485/1‑35 (MQ=255)
                tccGACGCTTTTTCATTTTTAACCGGCAAAAATCg                    <  1:9431796/35‑1 (MQ=255)
                 ccGACGCTTTTTCATTTTTAACCGGCAAAAATCgg                   <  1:3398239/35‑1 (MQ=255)
                 ccGACGCTTTTTCATTTTTAACCGGCAAAAATCgg                   >  1:5052405/1‑35 (MQ=255)
                 ccGACGCTTTTTCATTTTTAACCGGCAAAAATCgg                   <  1:11622319/35‑1 (MQ=255)
                 ccGACGCTTTTTCATTTTTAAACGGCAAAAATCgg                   <  1:14402992/35‑1 (MQ=255)
                  cGACGCTTTTTCATTTTTAACCGGCAAAAATCGGc                  >  1:14869366/1‑35 (MQ=255)
                  cGACGCTTTTTCATTTTTAACCGGCAAAAATCGGc                  >  1:11288856/1‑35 (MQ=255)
                   gACGCTTTTTCATTTTTAACCGGCAAAAATCGGCa                 >  1:10773265/1‑35 (MQ=255)
                    aCGCTTTTTCATTTTTAACCGGCAAAAATCGGCaa                >  1:20526698/1‑35 (MQ=255)
                    aCGCTTTTTCATTTTTAACCGGCAAAAATCGGCaa                >  1:4899778/1‑35 (MQ=255)
                    aCGCTTTTTCATTTTTAACCGGCAAAAATCGGCaa                >  1:4339600/1‑35 (MQ=255)
                    aCGCTTTTTCATTTTTAACCGGCAAAAATCGGCaa                <  1:18972435/35‑1 (MQ=255)
                     cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc               >  1:848871/1‑35 (MQ=255)
                     cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc               <  1:10649144/35‑1 (MQ=255)
                     cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc               >  1:19743942/1‑35 (MQ=255)
                     cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc               >  1:12302673/1‑35 (MQ=255)
                     cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc               <  1:17984868/35‑1 (MQ=255)
                     cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc               <  1:16116411/35‑1 (MQ=255)
                     cGCTTTTTCATTTTTAACCGGCAAAAATCGGCAAc               <  1:3694663/35‑1 (MQ=255)
                      gCTTTTTCATTTTTAACCGGCAAAAATCGGCAACa              >  1:3853229/1‑35 (MQ=255)
                      gCTTTTTCATTTTTAACCGGCAAAAATCGGCAACa              <  1:18548223/35‑1 (MQ=255)
                      gCTTTTTCATTTTTAACCGGCAAAAATCGGCAACa              <  1:15040422/35‑1 (MQ=255)
                      gCTTTTTCATTTTTAACCGGCAAAAATCGGCAACa              >  1:655554/1‑35 (MQ=255)
                      gCTTTTTCATTTTTAACCGGCAAAAATCGGCAACa              >  1:11819189/1‑35 (MQ=255)
                       ttttttcATTTTtagccagcaaaaaaatcagcccc             >  1:1317822‑M2/2‑12 (MQ=255)
                       cTTTTTCATTTTTAACCGGCAAAAATCGGCAACAt             <  1:7737727/35‑1 (MQ=255)
                       cTTTTTCATTTTTAACCGGCAAAAATCGGCAACAt             >  1:2995267/1‑35 (MQ=255)
                       cTTTTTCATTTTTAACCGGCAAAAATCGGCAACAt             >  1:15316504/1‑35 (MQ=255)
                        tttttCATTTTtagccagcaaaaaaatcagcccca            >  1:6705855‑M2/1‑11 (MQ=255)
                        tttttCATTTTTAACCGGCAAAAATCGGCAACAtt            <  1:12245906/35‑1 (MQ=255)
                        tttttCATTTTTAACCGGCAAAAATCGGCAACAtt            <  1:9245450/35‑1 (MQ=255)
                        gttttcAATTTtagccagcaaaaaaatcagcccca            >  1:8033628‑M2/2‑11 (MQ=255)
                         ttttCATTTTTAACCGGCAAAAATCGGCAACATTa           <  1:12025210/35‑1 (MQ=255)
                         ttttCATTTTTAACCGGCAAAAATCGGCAACATTa           <  1:15059406/35‑1 (MQ=255)
                         ttttCATTTTTAACCGGCAAAAATCGGCAACATTa           >  1:18401391/1‑35 (MQ=255)
                         ttttCATTTTTAACCGGCAAAAATCGGCAACATTa           <  1:20072280/35‑1 (MQ=255)
                          tttCATTTTTAACCGGCAAAAATCGGCAACATTaa          >  1:2732384/1‑35 (MQ=255)
                          tttCAATTTtagccagcaaaaaaatcagccccagg          >  1:20311894‑M2/1‑9 (MQ=255)
                          tttCAATTTtagccagcaaaaaaatcagccccagg          >  1:16346057‑M2/1‑9 (MQ=255)
                           ttCATTTTTAACCGGCAAAAATCGGCAACATTaaa         >  1:1873816/1‑35 (MQ=255)
                           ttCATTTTTAACCGGCAAAAATCGGCAACATTaaa         >  1:19533287/1‑35 (MQ=255)
                           ttCATTTTTAACCGGCAAAAATCGGCAACATTaaa         >  1:2535881/1‑35 (MQ=255)
                           ttCATTTTTAACCGGCAAAAATCGGCAAAATTaaa         <  1:15462502/35‑1 (MQ=255)
                           ttCATTATtagccagcaaaaaaatcagccccaggg         >  1:15561178‑M2/1‑8 (MQ=255)
                           ttCATTATtagccagcaaaaaaatcagccccaggg         >  1:10422132‑M2/1‑8 (MQ=255)
                            tCATTTTTAACCGGCAAAAATCGGCAACATTAAAt        <  1:17026974/35‑1 (MQ=255)
                            tCATTTTTAACCGGCAAAAATCGGCAACATTAAAt        <  1:17275996/35‑1 (MQ=255)
                             cATTTTTAACCGGCAAAAATCGGCAACATTAAATa       <  1:7586967/35‑1 (MQ=255)
                              tattttagccagcaaaaaaatcagccccagggtaa      >  1:13794526‑M2/3‑5 (MQ=255)
                              aTTTTTAACCGGCAAAAATCGGCAACATTAAATAc      >  1:8302094/1‑35 (MQ=255)
                              aTTTTTAACCGGCAAAAATCGGCAACATTAAATAc      <  1:7995198/35‑1 (MQ=255)
                               tttttAACCGGCAAAAATCGGCAACATTAAATACa     >  1:6190707/1‑35 (MQ=255)
                               tttttAACCGGCAAAAATCGGCAACATTAAATACa     >  1:4420847/1‑35 (MQ=255)
                               tttttAACCGGCAAAAATCGGCAACATTAAATACa     <  1:10198634/35‑1 (MQ=255)
                                ttttAACCGGCAAAAATCGGCAACATTAAATACAg    <  1:8726660/35‑1 (MQ=255)
                                ttttAACCGGCAAAAATCGGCAACATTAAATACAg    >  1:9476755/1‑35 (MQ=255)
                                ttttAACCGGCAAAAATCGGCAACATTAAATACAg    >  1:16954147/1‑35 (MQ=255)
                                ttttAACCGGCAAAAATCGGCAACATTAAATACAg    <  1:5954604/35‑1 (MQ=255)
                                ttttAACCGGCAAAAATCGGCAACATTAAATACAg    >  1:17667055/1‑35 (MQ=255)
                                ttttAACCGGCAAAAATCGGCAACATTAAATACAg    <  1:14574271/35‑1 (MQ=255)
                                 tttAACCGGCAGAAATCGGCAACATTAAATACAGc   >  1:7347856/1‑35 (MQ=255)
                                 tttAACCGGCAAAAATCGGCAACATTAAATACAGc   <  1:16183205/35‑1 (MQ=255)
                                 tttAACCGGCAAAAATCGGCAACATTAAATACAGc   <  1:15240904/35‑1 (MQ=255)
                                 tttAACCGGCAAAAATCGGCAACATTAAATACAGc   >  1:5125007/1‑35 (MQ=255)
                                 tttAACCGGCAAAAATCGGCAACATTAAATACAGc   <  1:13596990/35‑1 (MQ=255)
                                  ttagccagcaaaaaaatcagccccagggtaagggg  >  1:10285532‑M2/1‑1 (MQ=255)
                                  ttAACCGGCAAAAATCGGCAACATTAAATACAGCt  <  1:10858151/35‑1 (MQ=255)
                                  ttAACCGGCAAAAATCGGCAACATTAAATACAGCt  <  1:15667516/35‑1 (MQ=255)
                                  ttAACCGGCAAAAATCGGCAACATTAAATACAGCt  <  1:2482961/35‑1 (MQ=255)
                                  |                                  
AGCGTTTCCGGTTCCTTCCGACGCTTTTTCATTTTTAACCGGCAAAAATCGGCAACATTAAATACAGCT  >  REL606/3766468‑3766536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.