New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1036060 =100 (0.970)19 (0.190) 7/46 NT 20.0% intergenic (+32/+44) ycbG/ompA hypothetical protein/outer membrane protein A (3a;II*;G;d)
?REL606 3483139 = 59 (0.570)coding (1455/2706 nt) malT transcriptional regulator MalT

GCTGCGGGGTTTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1036076‑1036060
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA  >  REL606/3483139‑3483172
                 |                                  
gccGCGGGGTTTTTTTTTTAGCCGCATTGTGGCAA                   <  1:9598511/32‑1
ccgGCGGGGTTTTTTTTTTAGCCGCATTGTGGCAA                   <  1:5371146/32‑1
cccGCGGGGTTTTTTTTTTAGCCGCATTGTGGCAA                   <  1:13519580/32‑1
  cGCGGGGTTTTTTTTTTAGCCGCATTGTGGCAACC                 <  1:8441329/34‑1
   GCGGGGATTTTTTTTTAGCCGCATTGTGGCAACCT                <  1:7984060/35‑1
    CGGTGTTTTTTTTTTAGCCGCATTGTGGCAACCTC               <  1:20589806/35‑1
    CGGGGTTTTTTTTTTAGCCGCATTGTGGCAACCTC               <  1:5047690/35‑1
     cGGGTTTTTTTTTTAGCCGCATTGTGGCAACCTCG              <  1:5120000/34‑1
     cGGGGTTTTTTTTTAGCCGCATTGTGGCAACCTCG              <  1:11579557/34‑1
     GGGTTTTTTTTTTTAGCCGCATTGTGGCAACCTCG              <  1:13993658/35‑1
     GGGGTTTTTTTTTTAGCCGCATTGTGGCAACCTCG              <  1:6126377/35‑1
      GGGTTTTTTTTTTAGCCGCATTGTGGCAACCTCGG             <  1:18354127/35‑1
       ttTTTTTTTTTTAGCCGCATTGTGGCAACCTCGGT            <  1:19542539/33‑1
       cGTTGTTTTTTTAGCCGCATTGTGGCAACCTCGGT            <  1:13624980/34‑1
       GGTTTTTTTTTTAGCCGCATTGTGGCAACCTCGGT            <  1:15610536/35‑1
       GGTTGTTTTTTTAGCCGCATTGTGGCAACCTCGGT            <  1:9473417/35‑1
       GGTTGTTTTTTTAGCCGCATTGTGGCAACCTCGGT            <  1:2560320/35‑1
        GTTTTTTTTTTAGCCGCATTGTGGCAACCTCGGTG           <  1:2638718/35‑1
          tgTTTTTTTAGCCGCATTGTGGCAACCTCGGTGCT         <  1:1210775/33‑1
           TTTTTTTTAGCCGCATTGTGGCAACCTCGGTGCTG        <  1:1538629/35‑1
            TTTTTTTAGCCGCATTGTGGCAACCTCGGTGCTGG       <  1:12993922/35‑1
             TTTTTTAGCCGCATTGTGGCAACCTCGGTGCTGGG      <  1:15034236/35‑1
              TTTTTAGCCGCATTGTGGCAACCTCGGTGCTGGGT     <  1:17952083/35‑1
               TTTTAGCCGCATTGTGGCAACCTCGGTGCTGGGTG    <  1:14042026/35‑1
               TTTTAGCCGCATTGTGGCAACCTCGGTGCTGGGTG    <  1:19654103/35‑1
               TTTTAGCCGCATTGTGGCAACCTCGGTGCTGGGTG    <  1:17089994/35‑1
                 TTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA  <  1:3623770/35‑1
                 TTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA  <  1:3180709/35‑1
                 TTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA  <  1:2839559/35‑1
                 TTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA  <  1:13360541/35‑1
                 TTAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA  <  1:759604/35‑1
                 |                                  
GCTGCGGGGTTTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1036076‑1036060
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGCCGCATTGTGGCAACCTCGGTGCTGGGTGAA  >  REL606/3483139‑3483172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.