New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2944816 | 47 (0.460) | 22 (0.210) | 8/48 | NT | 22.6% | coding (261/660 nt) | rpiA | ribose‑5‑phosphate isomerase A |
? | REL606 | 3912264 = | 104 (1.010) | intergenic (+44/‑96) | ilvL/ilvG | ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit |
Only 100 of 171 total aligned reads displayed.
CTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGA > REL606/3912230‑3912296 | cgcgccgccgcctttgatcatttgcatgtggccgg > 1:15286121‑M2/35‑35 (MQ=255) cgcgccgccgcctttgatcatttgcatgtggccgg > 1:10707136‑M2/35‑35 (MQ=255) cTTAACGATCTAAGACCCCCGCACCGAAAGGTCCg < 1:16487020/35‑1 (MQ=255) cTTAACGAACTAAGACCCCCGCACCGAAAGGTCCg < 1:12055594/35‑1 (MQ=255) ttAACGAACTAAGACCCCCGCACCGAAAGGTCCgg > 1:19695506/1‑35 (MQ=255) ttAACGAACTAAGACCCCCGCACCGAAAGGTCCgg > 1:7619814/1‑35 (MQ=255) ttAACGAACTAAGACCCCCGCACCGAAAGGTCCgg < 1:9792747/35‑1 (MQ=255) ttAACGAACTAAGACCCCCGCACCGAAAGGTCCgg > 1:9722842/1‑35 (MQ=255) ttAACGAACTAAGACCCCCGCACCGAAAGGTCCgg > 1:1053761/1‑35 (MQ=255) gcgccgccgcctttgatcatttgcatgtggccggg > 1:7332647‑M2/34‑35 (MQ=255) tAACGAACTAAGACCCCCGCACCGAAAGGTCCtgg > 1:14894036/1‑35 (MQ=255) tAACGAACTAAGACCCCCGCACCGAAAGGTCCggg > 1:585857/1‑35 (MQ=255) cgccgccgcctttgatcatttgcatgtggccgggg > 1:1757689‑M2/33‑35 (MQ=255) gccgccgcctttgatcatttgcatgtggccggggg > 1:8562947‑M2/32‑35 (MQ=255) aCGAACTAAGACCCCCGCACCGAAAGGTCCggggg > 1:11173361/1‑35 (MQ=255) aCGAACTAAGACCCCCGCACCGAAAGGTCCggggg < 1:9619505/35‑1 (MQ=255) cGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGt < 1:15488001/35‑1 (MQ=255) cGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGt > 1:7969806/1‑35 (MQ=255) gccgcctttgatcatttgcatgtggccgggggtgt > 1:6929922‑M2/29‑32 (MQ=255) gccgcctttgatcatttgcatgtggccgGGGGTtt > 1:9504873‑M2/29‑35 (MQ=255) gccgcctttgatcatttgcatgtggccgGGGGGtt > 1:2110337‑M2/29‑35 (MQ=255) gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt < 1:9624517/35‑1 (MQ=255) gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt > 1:16649580/1‑35 (MQ=255) gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt > 1:17966694/1‑35 (MQ=255) gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt > 1:13375709/1‑35 (MQ=255) gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt > 1:2989949/1‑35 (MQ=255) ccgcctttgatcatttgcatgtggccgGGGGTttt > 1:10840791‑M2/28‑35 (MQ=255) cgcctttgatcatttgcatgtggccgGGGGTtttt > 1:20350798‑M2/27‑35 (MQ=255) cgcctttgatcatttgcatgtggccgGGGGTtttt > 1:19485750‑M2/27‑35 (MQ=255) aCTAAGACCCCCGCACCGAAAGGTCCGGGGGtttt < 1:9103035/35‑1 (MQ=255) aCTAAGACCCCCGCACCGAAAGGTCCGGGGGtttt > 1:2336642/1‑35 (MQ=255) gcctttgatcatttgcatgtggccgGGGGGgtttt > 1:14980932‑M2/26‑35 (MQ=255) tAAGACCCCCGCACCGAAAGGTCCGGGGGtttttt > 1:4681745/1‑35 (MQ=255) cctttgatcatttgcatgtggccgGGGGTtttttt > 1:19823674‑M2/25‑35 (MQ=255) cctttgatcatttgcatgtggccgGGGGTtttttt > 1:1835831‑M2/25‑35 (MQ=255) aggACCCCCGCACCGAAAGGTCCGGGGGttttttt < 1:15314888/33‑1 (MQ=255) aaGACCCCCGCACCGAAAGGTCCGGGGGttttttt > 1:13004694/1‑35 (MQ=255) aaGACCCCCGCACCGAAAGGTCCGGGGGttttttt > 1:18456779/1‑35 (MQ=255) tttgatcatttgcatgtggccgGGGGttttttttg > 1:10627130‑M2/23‑34 (MQ=255) aGACCCCCGCACCGAAAGGTCCGGTGGgttttttt > 1:16168339/1‑35 (MQ=38) ttgatcatttgcatgtggccgGGGGtttttttttc > 1:10125736‑M2/22‑34 (MQ=255) ttgatcatttgcatgtggccgGGGGGTTTTTTTTg > 1:5128989‑M2/22‑35 (MQ=255) gtcccccGCACCGAAAGGTCCGGGGGgtttttttt > 1:1990090/3‑34 (MQ=38) aCCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGa > 1:12195865/1‑35 (MQ=255) cccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAc > 1:263858/1‑35 (MQ=255) ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc < 1:17096205/35‑1 (MQ=255) ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc > 1:15450944/1‑35 (MQ=255) ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc < 1:14033188/35‑1 (MQ=255) ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc < 1:15015258/35‑1 (MQ=255) cccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt < 1:1340613/35‑1 (MQ=255) cccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt > 1:13926161/1‑35 (MQ=255) cccGCACCGAAAGGTCCGGGGGGTTTTTTTGACCt > 1:8384999/1‑35 (MQ=255) ccGCACCGAAAGGTCCTGGGGTTTTTTTTGACCtt > 1:17548972/1‑35 (MQ=255) ccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCtt < 1:4118406/35‑1 (MQ=255) ccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCtt < 1:14811804/35‑1 (MQ=255) ccGCACCGAAAGGTCCGGGGGTTTTTTTTGACAtt < 1:3279382/35‑1 (MQ=255) cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa < 1:13020678/35‑1 (MQ=255) cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa > 1:17878650/1‑35 (MQ=255) cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa > 1:11944278/1‑35 (MQ=255) cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa < 1:334918/35‑1 (MQ=255) gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa > 1:19432131/1‑35 (MQ=255) gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa < 1:19114255/35‑1 (MQ=255) gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa < 1:533370/35‑1 (MQ=255) gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa > 1:15106899/1‑35 (MQ=255) gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa > 1:623809/1‑35 (MQ=255) cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa > 1:15711458/1‑35 (MQ=255) cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa < 1:6036952/35‑1 (MQ=255) cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa > 1:10130513/1‑35 (MQ=255) aCCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa > 1:12476498/1‑35 (MQ=255) aCCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa < 1:11166169/35‑1 (MQ=255) ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa < 1:3752852/35‑1 (MQ=255) ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa < 1:15539004/35‑1 (MQ=255) cGAAAGGTCCGGGTGTTTTTTTTGACCTTAAAAAc > 1:13957889/1‑35 (MQ=255) cGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAAc < 1:16257613/35‑1 (MQ=255) cGAAAGATCCGGGGGTTTTTTTTGACCTTAAAAAc < 1:13191552/35‑1 (MQ=255) gAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa > 1:54345/1‑35 (MQ=255) gAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa > 1:4270236/1‑35 (MQ=255) gAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa < 1:9229929/35‑1 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt > 1:20603770/1‑35 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt > 1:11276752/1‑35 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt < 1:8932997/35‑1 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt > 1:6873303/1‑35 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt < 1:16168025/35‑1 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt < 1:3171932/35‑1 (MQ=255) aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa > 1:823413/1‑35 (MQ=255) aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa < 1:13019874/35‑1 (MQ=255) aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa < 1:6615051/35‑1 (MQ=255) aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa < 1:4685106/35‑1 (MQ=255) aGGTCCGGGGGTTTTTTTTTACCTTAAAAACATaa > 1:11814265/1‑35 (MQ=255) aGGTCCGGGGGTTTTTTTTGACCTTAAAAACATaa > 1:4016292/1‑35 (MQ=255) aGGTCCGGGGGTTTTTTTTGACATTAAAAACATaa < 1:18593979/35‑1 (MQ=255) ggTCCGGGGGTTTTTTTTGACCTTAAAAACATAAc < 1:11884532/35‑1 (MQ=255) ggTCCGGGGGTTTTTTTTGACCTTAAAAACATAAc < 1:9292407/35‑1 (MQ=255) ggTCCGGGGGTTTTTTTTGACCTTAAAAACATAAc > 1:5572387/1‑35 (MQ=255) gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc < 1:16635497/35‑1 (MQ=255) gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc > 1:2859124/1‑35 (MQ=255) gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc < 1:13521831/35‑1 (MQ=255) tCCGGGGGTTTTTTTTGACCTTAAAAACATAACCg < 1:12152004/35‑1 (MQ=255) tCCGGGGGTTTTTTTTGACCTTAAAAACATAACCg > 1:3205100/1‑35 (MQ=255) ccGGGGGTTTTTTTTGACCTTAAAAACATAACCga > 1:818514/1‑35 (MQ=255) | CTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGA > REL606/3912230‑3912296 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |