Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,990 IS150 (+) +3 bp 100% intergenic (‑32/‑496) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16990 =0 (0.000)81 (0.790) 38/48 NT 100% intergenic (‑32/‑498) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 590471 NA (NA)noncoding (1977/1977 nt) IS150 repeat region
* ? REL606 = 169920 (0.000)58 (0.560) 29/48 NT 100% intergenic (‑34/‑496) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 188 total aligned reads displayed.

CATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAT  >  REL606/16956‑17024
                                  |                                  
 tgtttaactgtccaactttttggggtcagtacaAc                                   <  1:9648855‑M1/2‑1 (MQ=255)
 tgtttaactgtccaactttttggggtcagtacaAc                                   <  1:1526632‑M1/2‑1 (MQ=255)
 tgtttaactgtccaactttttggggtcagtacaAc                                   >  1:2065093‑M1/34‑35 (MQ=255)
 tgtttaactgtccaactttttggggtcagtacaAc                                   >  1:2551389‑M1/34‑35 (MQ=255)
 tgtttaactgtccaactttttggggtcagtacaAc                                   >  1:589515‑M1/34‑35 (MQ=255)
 atatAGGGGGCCTCGGGTTGATAGTAAAATATCAc                                   >  1:14178275/1‑35 (MQ=255)
 atatAGGGGGCCTCGGGTTGATAGTAAAATATCAc                                   <  1:3123372/35‑1 (MQ=255)
  tataGGGGGCCTCGGGTTGATAGTAAAATATCACt                                  >  1:14496406/1‑35 (MQ=255)
  gtttaactgtccaactttttggggtcagtacaACt                                  >  1:19284257‑M1/33‑35 (MQ=255)
  gtttaactgtccaactttttggggtcagtacaACt                                  <  1:14056798‑M1/3‑1 (MQ=255)
  gtttaactgtcaaactttttggggtcagtacaACt                                  >  1:15646708‑M1/33‑35 (MQ=255)
   tttaactgtccaactttttggggtcagtacaACTc                                 >  1:3798717‑M1/32‑35 (MQ=255)
   tttaactgtccaactttttggggtcagtacaACTc                                 >  1:6920623‑M1/32‑35 (MQ=255)
   tttaactgtccaactttttggggtcagtacaACTc                                 <  1:11647322‑M1/4‑1 (MQ=255)
   tttaactgtccaactttttggggtcagtacaACTc                                 <  1:17125584‑M1/4‑1 (MQ=255)
   ataGGGGGCCTCGGGTTGATAGTAAAATATCACTt                                 >  1:7323851‑M1/1‑34 (MQ=255)
    taGGGGGCCTCGGGTTGATAGTAAAATATCACTtg                                <  1:4147269‑M1/35‑3 (MQ=255)
    taGGGGGCCTCGGGTTGATAGTAAAATATCACTtg                                >  1:8961776‑M1/1‑33 (MQ=255)
     taactgtccaactttttggggtcagtacaACTCgg                               >  1:2593181‑M1/30‑35 (MQ=255)
     taactgtccaactttttggggtcagtacaACTCgg                               >  1:8864062‑M1/30‑35 (MQ=255)
     aGGGGGCCTCGTGTTGATAGTAAAATATCACTtgt                               >  1:14426984‑M1/1‑32 (MQ=255)
     aGGGGGCCTCGGGTTGATAGTAAAATATCACTtgt                               >  1:17930161‑M1/1‑32 (MQ=255)
       actgtccaactttttggggtcagtacaACTCgggg                             >  1:9843746‑M1/28‑35 (MQ=255)
        gggCCTCGGGTTGATAGTAAAATATCACTtgtact                            <  1:17983665‑M1/35‑7 (MQ=255)
        gggCCTCGGGTTGATAGTAAAATATCACTtgtact                            <  1:4432378‑M1/35‑7 (MQ=255)
        gggCCTCGGGTTGATAGTAAAATATCACTtgtact                            >  1:8353596‑M1/1‑29 (MQ=255)
        gggCCTCGGGTTGATAGTAAAATATCACTtgtact                            >  1:5993962‑M1/1‑29 (MQ=255)
        gggCCTCGGGTTGATAGTAAAATATCACTtgtact                            >  1:6552350‑M1/1‑29 (MQ=255)
        ctgtccaactttttggggtcagtacaACTCGGGGc                            >  1:9542034‑M1/27‑35 (MQ=255)
        ctgtccaactttttggggtcagtacaACTCGGGGc                            <  1:10889814‑M1/9‑1 (MQ=255)
        ctgtccaactttttggggtcagtacaACTCGGGGc                            <  1:16740188‑M1/9‑1 (MQ=255)
        ctgtccaactttttggggtcagtacaACTCGGGGc                            <  1:16976552‑M1/9‑1 (MQ=255)
         tgtccaactttttggggtcagtacaACTCGGGGCt                           >  1:271521‑M1/26‑35 (MQ=255)
         tgtccaactttttggggtcagtacaACTCGGGGCt                           <  1:16010254‑M1/10‑1 (MQ=255)
         ggCCTCGGGTTGATAGTAAAATATCACTtgtactg                           >  1:17143979‑M1/1‑28 (MQ=255)
          gtccaactttttggggtcagtacaACTCGGGGCtt                          >  1:17608611‑M1/25‑35 (MQ=255)
          gtccaactttttggggtcagtacaACTCGGGGCtt                          >  1:9649708‑M1/25‑35 (MQ=255)
           tccaactttttggggtcagtacaACTCGGGGCttt                         <  1:20215807‑M1/12‑1 (MQ=255)
            ccaactttttggggtcagtacaACTCGGGGCtttt                        <  1:7380613‑M1/13‑1 (MQ=255)
            ccaactttttggggtcagtacaACTCGGGGCtttt                        >  1:13874678‑M1/23‑35 (MQ=255)
            ccaactttttggggtcagtacaACTCGGGGCtttt                        <  1:339824‑M1/13‑1 (MQ=255)
            ccaactttttggggtcagtacaACTCGGGGCtttt                        >  1:2883616‑M1/23‑35 (MQ=255)
            cTCGGGTTGATAGTAAAATATCACTtgtactgcac                        <  1:15139544‑M1/35‑11 (MQ=255)
            cTCGGGTTGATAGTAAAATATCACTtgtactgcac                        <  1:14841937‑M1/35‑11 (MQ=255)
             caactttttggggtcagtacaACTCGGGGCTTTtc                       >  1:17359638‑M1/22‑35 (MQ=255)
             caactttttggggtcagtacaACTCGGGGCTTTtc                       >  1:4847296‑M1/22‑35 (MQ=255)
               actttttggggtcagtacaACTCGGGGCTTTtctc                     >  1:17227164‑M1/20‑35 (MQ=255)
                ggTTGATAGTAAAATATCACTtgtactgcacccat                    >  1:11426101‑M1/1‑21 (MQ=255)
                 tttttggggtcagtacaACTCGGGGCTTTTCTCTa                   >  1:10540238‑M1/18‑35 (MQ=255)
                  ttttggggtcagtacaACTCGGGGCTTTTCTCTAt                  <  1:11581269‑M1/19‑1 (MQ=255)
                  ttttggggtcagtacaACTCGGGGCTTTTCTCTAt                  >  1:14785681‑M1/17‑35 (MQ=255)
                  ttGATAGTAAAATATCACTtgtactgcacccattt                  >  1:19606351‑M1/1‑19 (MQ=255)
                  ttGATAGTAAAATATCACTtgtactgcacccattt                  <  1:18534574‑M1/35‑17 (MQ=255)
                   tttggggtcagtacaACTCGGGGCTTTTCTCTATc                 <  1:16140927‑M1/20‑1 (MQ=255)
                   tttggggtcagtacaACTCGGGGCTTTTCTCTATc                 >  1:5909647‑M1/16‑35 (MQ=255)
                   tGATAGTAAAATATCACTtgtactgcacccatttt                 <  1:1876136‑M1/35‑18 (MQ=255)
                   tGATAGTAAAATATCACTtgtactgcacccatttt                 <  1:6690504‑M1/35‑18 (MQ=255)
                    ttggggtcagtacaACTCGGGGCTTTTCTCTATCt                >  1:8425105‑M1/15‑35 (MQ=255)
                    ttggggtcagtacaACTCGGGGCTTTTCTCTATCt                >  1:12127682‑M1/15‑35 (MQ=255)
                    ttggggtcagtacaACTCGGGGCTTTTCTCTATCt                >  1:6185761‑M1/15‑35 (MQ=255)
                    gATAGTAAAATATCACTtgtactgcacccattttg                >  1:8644247‑M1/1‑17 (MQ=255)
                     tggggtcagtacaACTCGGGGCTTTTCTCTATCTg               <  1:1739613‑M1/22‑1 (MQ=255)
                     tggggtcagtacaACTCGGGGCTTTTCTCTATCTg               <  1:19711171‑M1/22‑1 (MQ=255)
                     tggggtcagtacaACTCGGGGCTTTTCTCTATCTg               >  1:11507293‑M1/14‑35 (MQ=255)
                     aTAGTAAAATATCACTtgtactgcacccattttgt               <  1:11238373‑M1/35‑20 (MQ=255)
                     aTAGTAAAATATCACTtgtactgcacccattttgt               <  1:11299600‑M1/35‑20 (MQ=255)
                     aTAGTAAAATATCACTtgtactgcacccattttgt               <  1:8605442‑M1/35‑20 (MQ=255)
                       aGTAAAATATCACTtgtactgcacccattttgttg             >  1:8671‑M1/1‑14 (MQ=255)
                        ggtcagtacaACTCGGGGCTTTTCTCTATCTGCCg            >  1:13199820‑M1/11‑35 (MQ=255)
                        gTAAAATATCACTtgtactgcacccattttgttgg            >  1:18476787‑M1/1‑13 (MQ=255)
                        gTAAAATATCACTtgtaatgcacccattttgttgg            <  1:1045786‑M1/35‑23 (MQ=255)
                         tAAAATATCACTtgtactgcacccattttgttgga           >  1:8021345‑M1/1‑12 (MQ=255)
                         gtcagtacaACTCTGGGCTTTTCTCTATCTGCCGt           <  1:1280460‑M1/26‑1 (MQ=255)
                         gtcagtacaACTCGGGGCTTTTCTCTATCTGCcgg           <  1:2786296‑M1/26‑2 (MQ=255)
                          tcagtacaACTCGGGGCTTTTCTCTATCTGCCGtt          <  1:15851334‑M1/27‑1 (MQ=255)
                           cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc         <  1:15894172‑M1/28‑1 (MQ=255)
                           cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc         >  1:10164638‑M1/8‑35 (MQ=255)
                           cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc         >  1:3448358‑M1/8‑35 (MQ=255)
                           cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc         <  1:13725858‑M1/28‑1 (MQ=255)
                           cagtacaACTCGGGGCTTTTCTCTATCTGCCGTTc         >  1:5260650‑M1/8‑35 (MQ=255)
                           aaaTATCACTtgtactgcacccattttgttggacg         >  1:4028777‑M1/1‑10 (MQ=255)
                           aaaTATCACTtgtactgcacccattttgttggacg         <  1:1979318‑M1/35‑26 (MQ=255)
                            agtacaACTCGGGGCTTTTCTCTATCTGCCGTtcc        <  1:19137257‑M1/29‑2 (MQ=255)
                            agtacaACTCGGGGCTTTTCTCTATCTGCCGTTCa        <  1:13747648‑M1/29‑1 (MQ=255)
                            agtacaACTCGGGGCTTTTCTCTATCTGCCGTTCa        <  1:15780948‑M1/29‑1 (MQ=255)
                            agtacaACTCGGGGCTTTTCTCTATCTGCCGTTCa        <  1:19304301‑M1/29‑1 (MQ=255)
                            aaTATCACTtgtactgcacccattttgttggacga        <  1:9186861‑M1/35‑27 (MQ=255)
                             atatCACTtgtactgcacccattttgttggacgat       <  1:5154771‑M1/35‑28 (MQ=255)
                             atatCACTtgtactgcacccattttgttggacaga       >  1:17463347‑M1/1‑8 (MQ=255)
                              tacaACTCGGGGCTTTTCTCTATCTGCCGTTCAGc      <  1:11151918‑M1/31‑1 (MQ=255)
                               atCACTtgtactgcacccattttgttggacgatga     <  1:11205532‑M1/35‑30 (MQ=255)
                               atCACTtgtactgcacccattttgttggacgatga     <  1:5610025‑M1/35‑30 (MQ=255)
                               atCACTtgtactgcacccattttgttggacgatga     >  1:3006609‑M1/1‑6 (MQ=255)
                                tCACTtgtactgcacccattttgttggacgatgaa    >  1:10125823‑M1/1‑5 (MQ=255)
                                caACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTa    >  1:369874‑M1/3‑35 (MQ=255)
                                 aACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTaa   >  1:16644898‑M1/2‑35 (MQ=255)
                                  aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt  >  1:828908/1‑35 (MQ=255)
                                  aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt  <  1:6625480/35‑1 (MQ=255)
                                  aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt  <  1:950802/35‑1 (MQ=255)
                                  aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt  <  1:17816292/35‑1 (MQ=255)
                                  |                                  
CATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAT  >  REL606/16956‑17024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.