New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2487179 =54 (0.530)11 (0.170) 3/30 NT 21.0% coding (435/1404 nt) eutA reactivating factor for ethanolamine ammonia lyase
?REL606 = 3686151 49 (0.760)coding (411/741 nt) yiaT hypothetical protein

CGGTCACGGAGCCGGGGCACAAACCCTTTCTGAACAACGGCTG‑‑‑‑‑‑‑‑‑  <  REL606/2487221‑2487179
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacggctgGGTGGGGGA  <  REL606/3686151‑3686143
                                                    
CGGTCACGGAGCCGGGGCACAAACCCTTTCTGAAC                   <  1:11601227/35‑1
 GGTCACGGAGCCGGGGCACAAACCCTTTCTGAACA                  <  1:18741471/35‑1
 GGTCACGGAGCCGGGGCACAAACCCTTTCTGAACA                  <  1:6405202/35‑1
 GGTCACGGAGCCGGGGCACAAACCCTTTCTGAACA                  >  1:8982605/1‑35
 GGTCACGGAGCCGGGGCACAAACACTTTCTGAACA                  >  1:20268524/1‑35
 GGTCAAGGAGCCGGGGCACAAACCCTTTCTGAACA                  >  1:20232321/1‑35
  gaCACGGAGCCGGGGCACAAACCCTTTCTGAACAA                 <  1:5723595/33‑1
  GTCACGGAGCCGTGGCACAAACCCTTTCTGAACAA                 >  1:5271885/1‑35
  GTCACGGAGCCGGGGCACAAACCCTTTCTGAACAA                 >  1:17417023/1‑35
  GTCACGGAGCCGGGGCACAAACCCTTTCTGAACAA                 >  1:20456073/1‑35
  GTCACGGAGCCGGGGCACAAACCCTTTCTGAACAA                 <  1:12539952/35‑1
   TCACGGAGCCGGGGCACAAACCCTTTCTGAACAAC                >  1:15420970/1‑35
   TCACGGAGCCGGGGCACAAACCCTTTCTGAACAAC                <  1:19580061/35‑1
   TCACGGAGCCGGGGCACAAACCCTTTCTGAACAAC                <  1:11786899/35‑1
    CACGGAGCCGGGGCACAAGCCCTTTCTGAACAACG               <  1:3611750/35‑1
    CACGGAGCCGGGGCACAAACCCTTTCTGAACAACG               <  1:1564318/35‑1
    CACGGAGCCGGGGCACAAACCCTTTCTGAACAACG               >  1:7978557/1‑35
    CACGGAGCCGGGGCACAAACCCTTTCTGAACAACG               >  1:7493899/1‑35
    CACGGAGCCGGGGCACAAACCCTTTCTGAACAACG               <  1:4341356/35‑1
    CACGGAGCCGGGGCACAAACCCTTTCTGAACAACG               <  1:17174113/35‑1
    CACGGAGCCGGGGCACAAACCCTTTCTGAACAACG               >  1:11753287/1‑35
    CACGGAGCCGGGGCACAAACCCTTTCTGAACAACG               <  1:5635911/35‑1
     ACGGAGCCGGGGCACAAACCCTTTCTGAACAACGG              >  1:8348519/1‑35
     ACGGAGCCGGGGCACAAACCCTTTCTGAACAACGG              <  1:4213787/35‑1
     ACGGAGCCGGGGCACAAACCCTTTCTGAACAACGG              <  1:6456588/35‑1
     ACGGAGCCGGGGCACAAACCCTTTCTGAACAACGG              >  1:14731371/1‑35
     ACGGAGCCGGGGCACAAACCCTTTCTGAACAACGG              <  1:15734522/35‑1
     ACGGAGCCGGGGCACAAACCCTTTCTGAACAACGG              >  1:9268699/1‑35
     ACGGAGCCGGGGCACAAACCCTTTCTGAACAACGG              <  1:6446455/35‑1
     ACGGAGCCGGGGCACAAACCCTTTCTGAACAACGG              <  1:1687819/35‑1
     ACGGAGCCGGGGCACAAACCCTTTCTGAACAACGG              >  1:6026111/1‑35
     ACGGAGCCGGGGCACAAACCCTTTCTGAACAACGG              >  1:581552/1‑35
     ACGGAGCCGGGGCACAAACCCTTTCTGAACAACGG              >  1:18615625/1‑35
      CGGAGCCGGGGCACAAACCCTTTCTGAACAACGGC             >  1:20382094/1‑35
      CGGAGCCGGGGCACAAACCCTTTCTGAACAACGGC             <  1:6193614/35‑1
       GGAGCCGGGGCACAAACCCTTTCTGAACAACGGCT            <  1:9053553/35‑1
       GGAGCCGGGGCACAAACCCTTTCTGAACAACGGCT            >  1:16382054/1‑35
       GGAGCCGGGGCACAAACCCTTTCTGAACAACGGCT            >  1:15380741/1‑35
       GGAGCCGGGGCACAAACCCTTTCTGAACAACGGCT            <  1:109414/35‑1
       GGAGCCGGGGCACAAACCCTTTCGGAACAACGGCT            <  1:13838957/35‑1
        GAGCCGGGGCACAAACCCTTTCTGAACAACGGCTG           >  1:7348086/1‑35
        GAGCCGGGGCACAAACCCTTTCTGAACAACGGCTG           >  1:191769/1‑35
        GAGCCGGGGCACAAACCCTTTCTGAACAACGGCTG           <  1:16838402/35‑1
         AGCCGGGGCACAAACCCTTTCTGAACAACGGCTGG          >  1:20554898/1‑35
          GCCGGGGCACAAACCCTTTCTGAACAACGGCTGGG         >  1:317262/1‑35
          GCCGGGGCACAAACCCTTTCTGAACAACGGCTGGG         >  1:7209281/1‑35
          GCCGGGGCACAAACCCTTTCTGAACAACGGCTGGG         >  1:18446569/1‑35
           CCGGGGCACAAACCCTTTCTGAACAACGGCTGGGg        >  1:1819782/1‑34
            CGGGGCACAAACCCTTTCTGAACAACGGCTGGGgg       >  1:2953027/1‑33
            CGGGGCACAAACCCTTTCTGAACAACGGCTGGGgg       >  1:18823806/1‑33
            CGGGGCACAAACCCTTTCTGAACAACGGCTGGGgg       >  1:17844280/1‑33
            CGGGGCACAAACCCTTTCTGAACAACGGCTGGGgg       >  1:8993166/1‑33
            CGGGGCACAAACCCTTTCTGAACAACGGCTGGGgc       >  1:19041557/1‑33
             GGGGCACAAACCCTTTCTGAACAACGGCTGGGGGG      >  1:9670430/1‑35
             GGGGCACAAACCCTTTCTGAACAACGGCTGGGGGG      >  1:16632978/1‑35
             GGGGCACAAACCCTTTCTGAACAACGGCTGGGGGG      >  1:10265387/1‑35
              GGGCACAAACCCTTTCTGAACAACGGCTGGGGGGG     >  1:6588584/1‑35
              GGGCACAAACCCTTTCTGAACAACGGCTGGGGGGG     >  1:4808518/1‑35
              GGGCACAAACCCTTTCTGAACAACGGCTGGGGGGG     >  1:2098977/1‑35
              GGGCACAAACCCTTTCTGAACAACGGCTGGGGGGG     >  1:17169232/1‑35
               aGCACAAACCCTTTCTGAACAACGGCTGGGGGGGG    >  1:8729375/2‑35
               GGCACAAACCCTTTCTGAACAACGGCTGGGGGGGG    >  1:20502936/1‑35
               GGCACAAACCCTTTCTGAACAACGGCTGGGGGGGG    >  1:20131539/1‑35
               GGCACAAACCCTTTCTGAACAACGGCTGGGGGGGG    >  1:16069554/1‑35
               GGCACAAACCCTTTCTGAACAACGGCTGGGGGGGG    >  1:9748943/1‑35
                GCACAAACCCTTTCTGAACAACGGCTGGGGGGGGG   >  1:4497900/1‑35
                 CACAAACCCTTTCTGAACAACGGCTGGGGGGGGGg  >  1:20590733/1‑34
                                                    
CGGTCACGGAGCCGGGGCACAAACCCTTTCTGAACAACGGCTG‑‑‑‑‑‑‑‑‑  <  REL606/2487221‑2487179
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacggctgGGTGGGGGA  <  REL606/3686151‑3686143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.