New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 462517 =55 (0.540)11 (0.120) 4/42 NT 17.3% coding (363/528 nt) priC primosomal replication protein N''
?REL606 1306336 = 57 (0.630)intergenic (‑97/+274) cls/kch cardiolipin synthetase/voltage‑gated potassium channel

GCGTAAACGTATTCAGCATCAGGATTTTGAGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/462553‑462517
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGCGGGGGTATAATGACCATTCTGTTAT  >  REL606/1306336‑1306364
                                                                  
GCGTAAACGTATTCAGCATCAGGATTTTGAGCGGC                                 >  1:19098051/1‑35
GCGTAAACGTATTCAGCATCAGGATTTTGAGCGGC                                 <  1:18953887/35‑1
GCGTAAACGTATTCAGCATCAGGATTTTGAGCGGC                                 >  1:19851371/1‑35
GCGTAAACGTATTCAGCATCAGGATTTTGAGCGGC                                 >  1:20179423/1‑35
GCGTAAACGTATTCAGCATCAGGATTTTGAGCGGC                                 <  1:16471888/35‑1
GCGTAAACGTATTCAGCATCAGGATTTTGAGCGGC                                 <  1:14496563/35‑1
GCGTAAACGTATTCAGCATCAGGATTTTGAGCGGC                                 <  1:6368803/35‑1
 CGTAAACGTATTCAGCATCAGGATTTTGAGCGGCG                                >  1:15986429/1‑35
 CGTAAACGTATTCAGCATCAGGATTTTGAGCGGCG                                >  1:16871348/1‑35
 CGTAAACGTATTCAGCATCAGGATTTTGAGCGGCG                                >  1:8050173/1‑35
 CGTAAACGTATTCAGCATCAGGATTTTGAGCGGCG                                >  1:1821285/1‑35
 CGTAAACGTATTCAGCATCAGGATTTTGAGCGGCG                                >  1:18440938/1‑35
 CGTAAACGTATTCAGCATCAGGATTTTGAGCGGCG                                <  1:9013254/35‑1
  GTAAACGTATTCAGCATCATGATTTTGAGCGGCGG                               >  1:14077298/1‑35
  GTAAACGTATTCAGCATCAGGATTTTGAGCGGCGG                               >  1:1383098/1‑35
  GTAAACGTATTCAGCATCAGGATTTTGAGCGGCGG                               >  1:2177073/1‑35
  GTAAACGTATTCAGCATCAGGATTTTGAGCGGCGG                               <  1:1153317/35‑1
   TAAACGTATTCAGCATCAGGATTTTGAGCGGCGGG                              >  1:244715/1‑35
   TAAACGTATTCAGCATCAGGATTTTGAGCGGCGGG                              >  1:19165909/1‑35
    AAACGTATTCAGCATCAGGATTTTGAGCGGCGGGG                             >  1:16507881/1‑35
    AAACGTATTCAGCATCAGGATTTTGAGCGGCGGGG                             >  1:9142912/1‑35
    AAACGTATTCAGCATCAGGATTTTGAGCGGCGGGG                             >  1:343702/1‑35
     AACGTATTCAGCATCAGGATTTTGAGCGGCGGGGa                            >  1:19625245/1‑34
     AACGTATTCAGCATCAGGATTTTGAGCGGCGGGGG                            >  1:18008319/1‑35
      ACGTATTCAGCATCAGGATTTTGAGCGGCGGGtac                           >  1:849742/1‑32
      ACGTATTCAGCATCAGGATTTTGAGCGGCGGGGGC                           >  1:4601477/1‑35
       CGTATTCAGCATCAGGATTTTGAGCGGCGGGGcac                          >  1:4482473/1‑32
       CGTATTCAGCATCAGGATTTTGAGCGGCGGGGACG                          >  1:17459896/1‑35
        GTATTCAGCATCAGGATTTTGAGCGGCGGGGGGGG                         >  1:13033854/1‑35
        GTATTCAGCATCAGGATTTTGAGCGGCGGGGACGG                         >  1:14868059/1‑35
         TATTCAGCATCAGGATTTTGAGCGGCGGGGGGGGG                        >  1:18997499/1‑35
         TATTCAGCATCAGGATTTTGAGCGGCGGGGACGGG                        >  1:17701861/1‑35
          ATTCAGCATCAGGATTTTGAGCGGCGGGGGCGGGG                       >  1:9474490/1‑35
          ATTCAGCATCAGGATTTTGAGCGGCGGGGGCGGGG                       >  1:2793682/1‑35
           TTCAGCATCAGGATTTTGAGCGGCGGGGGGGGGGG                      >  1:2714542/1‑35
           TTCAGCATCAGGATTTTGAGCGGCGGGGGCGGGGG                      >  1:7863980/1‑35
            TCAGCATCAGGATTTTGAGCGGCGGGGGGGGGGGa                     >  1:3438533/1‑34
            TCAGCATCAGGATTTTGAGCGGCGGGGGCGGGGGa                     >  1:8871800/1‑34
            TCAGCATCAGGATTTTGAGCGGCGGGGGCGCGGGg                     >  1:12089058/1‑34
                               CGGCGGGGGCGGGGTTATAATGACCATTCTGTTAT  <  1:12017805/35‑1
                                                                  
GCGTAAACGTATTCAGCATCAGGATTTTGAGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/462553‑462517
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGCGGGGGTATAATGACCATTCTGTTAT  >  REL606/1306336‑1306364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.