New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1017944 | 68 (0.660) | 11 (0.110) | 7/48 | NT | 11.4% | coding (1638/2601 nt) | ycbS | predicted outer membrane usher protein |
? | REL606 | = 3424887 | 103 (1.000) | intergenic (+105/‑21) | nirD/nirC | nitrite reductase small subunit/nitrite transporter |
AACTTACTGGCATACGGATCAACAGGATCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1017911‑1017944 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAACAAAAAATAAAA < REL606/3424887‑3424871 AACTTACTGGCATACGGATCAACAGGATCGGCTAA > 1:9637745/1‑35 AACTTACTGGCATACGGATCAACAGGATCGGCTAA > 1:19656895/1‑35 AACTTACTCGCATACGGATCAACAGGATCGGCTAA > 1:1787351/1‑35 CTTACTGGCATACGGATCAACAGGATCGGCTAAAA > 1:2107722/1‑35 TTACTGGCATACGGATCAACAGGATCGGCTAAAAA > 1:15835781/1‑35 TACTGGCATACGGATCAACAGGATCGGCTAAAAAA > 1:1453564/1‑35 TACTGGCATACGGATCAACAGGATCGGCTAAAAAA > 1:15299535/1‑35 TACTGGCATACGGATCAACAGGATCGGCTAAAAAA > 1:12973355/1‑35 TACTGGCATACGGATCAACAGGATCGGCTAAAAAA > 1:11388539/1‑35 TGGCATACGGATCAACAGGATCGGCTAAAAAAAAA > 1:13856257/1‑35 TGGCATACGGATCAACAGGATCGGCTAAAAAAAAA > 1:5364837/1‑35 GGCATACGGATCAACAGGATCGGCTAAAAAAAAAc > 1:2443475/1‑34 GCATACGGATCAACAGGATCGGCTAAAAAAAAAAA > 1:7870814/1‑35 ATACGGATCAACAGGATCGGCTAAAAAAAAAAAAA > 1:18225007/1‑35 ATACGGATCAACAGGATCGGCTAAAAAAAAAAAAA > 1:7997157/1‑35 ATACGGATCAACAGGATCGGCTAAAAAAAAAAAAA > 1:8332556/1‑35 ACGGATCAACAGGATCGGCTAAAAAAAAAAAAATA > 1:8218042/1‑35 CGGATCAACAGGATCGGCTAAAAAAAAAAAAATAA > 1:12537491/1‑35 GGATCAACAGGATCGGCTAAAAAAAAAAAAATAAA > 1:6154874/1‑35 GATCAACAGGATCGGCTAAAAAAAAAAAAATAAAA > 1:3420825/1‑35 AACTTACTGGCATACGGATCAACAGGATCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1017911‑1017944 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAACAAAAAATAAAA < REL606/3424887‑3424871 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |