New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 842815109 (1.060)4 (0.040) 3/44 NT 4.8% intergenic (‑93/‑260) ybiF/ompX threonine and homoserine efflux system/outer membrane protein X
?REL606 3607355 = 58 (0.620)coding (503/2076 nt) yhjG predicted outer membrane biogenesis protein

AATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/842780‑842815
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAGCCGAAACGACCATGCCGACGGCTTTGCATTCG  >  REL606/3607355‑3607388
                                                                      
AATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCC                                     <  1:10235099/35‑1
AATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCC                                     >  1:3282799/1‑35
AATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCC                                     >  1:11146807/1‑35
 ATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC                                    <  1:686562/35‑1
 ATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC                                    <  1:14352475/35‑1
 ATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC                                    >  1:10061141/1‑35
  TGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCCA                                   <  1:15556376/35‑1
                    aaAAAAAATTTTCCCCAGCCGAAACGACCATGCCG                 <  1:4656822/33‑1
                      AAAAAATTTTCCCCAGCCGAAACGACCATGCCGAC               <  1:1645952/35‑1
                       AAAAATTTTCCCCAGCCGAAACGACCATGCCGACG              <  1:6039924/35‑1
                            taTTCCCCAGCCGAAACGACCATGCCGACGGCTTT         <  1:10969573/33‑1
                            TTTTCCCCAGCCGAAACGACCATGCCGACGGCTTT         <  1:9140108/35‑1
                               TCCCCAGCCGAAACGACCATGCCGACGGCTTTGCA      <  1:3195943/35‑1
                                CCCCAGCCGAAACGACCATGCCGACGGCTTTGCAT     <  1:8831100/35‑1
                                CCCCAGCCGAAACGACCATGCCGACGGCTTTGCAT     <  1:6014140/35‑1
                                CCCCAGCCGAAACGACCATGCCGACGGCTTTGCAT     <  1:3606323/35‑1
                                CCCCACCCGAAACGACCATGCCGACGGCTTTGCAT     <  1:5470849/35‑1
                                 CCCAGCCGAAACGACCATGCCGACGGCTTTGCATT    <  1:5656022/35‑1
                                 CCCACCCGAAACGACCATGCCGACGGCTTTGCATT    <  1:8395603/35‑1
                                  CCAGCCGAAACGACCATGCCGACGGCTTTGCATTC   >  1:4512440/1‑35
                                  CCAGCCGAAACGACCATGCCGACGGCTTTGCATTC   >  1:15770450/1‑35
                                  CCAGCCGAAACGACCATGCCGACGGCTTTGCATTC   <  1:15140136/35‑1
                                  CCAGCCGAAACGACCATGCCGACGGCTTTGCATTC   >  1:13378292/1‑35
                                  CCAGCCGAAACGACCATGCCGACGGCTTTGCATTC   >  1:12172021/1‑35
                                  CCACCCGAAACGACCATGCCGACGGCTTTGCATTC   <  1:4286379/35‑1
                                   CAGCCGAAACGACCATGCCGACGGCTTTGCATTCG  >  1:4284881/1‑35
                                   CAGCCGAAACGACCATGCCGACGGCTTTGCATTCG  >  1:10730477/1‑35
                                   CAGCCGAAACGACCATGCCGACGGCTTTGCATTCG  >  1:5671716/1‑35
                                   CAGCCGAAACGACCATGCCGACGGCTTTGCATTCG  <  1:16149704/35‑1
                                   CAGCCGAAACGACCATGCCGACGGCTTTGCATTCG  >  1:16024010/1‑35
                                                                      
AATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/842780‑842815
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAGCCGAAACGACCATGCCGACGGCTTTGCATTCG  >  REL606/3607355‑3607388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.