New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 5007864 (0.620)8 (0.100) 3/38 NT 17.8% coding (77/1332 nt) yaaU predicted transporter
?REL606 558256 = 23 (0.280)coding (193/294 nt) ECB_00516 conserved hypothetical protein

CGGGCATGGCAAGCGAATGAATATGCCGTGGTGGGGCGGTTTTGATACACGTGCATGGGATGTGGCAAG  >  REL606/558222‑558290
                                  |                                  
ttcaccgccgcattttgctgtggggaagcggtggg                                    >  1:4075849‑M2/35‑35 (MQ=255)
ttcaccgccgcattttgctgtggggaagcggtggg                                    >  1:12450493‑M2/35‑35 (MQ=255)
 tggtgccgccctggccggtgaggttCGTGGTgggg                                   <  1:11020646‑M1/10‑1 (MQ=255)
 tcaccgccgcattttgctgtggggaagcggtgggc                                   >  1:2842859‑M2/34‑34 (MQ=255)
 tcaccgccgcattttgctgtggggaagcggtgggc                                   >  1:19594496‑M2/34‑34 (MQ=255)
  caccgccgcattttgctgtggggaagcggtggGGc                                  >  1:15266721‑M2/33‑35 (MQ=255)
  caccgccgcattttgctgtggggaagcggtggGGc                                  >  1:20483604‑M2/33‑35 (MQ=255)
   gtgccgccctggccggtgaggttCGTggtgggcgg                                 <  1:2694370‑M1/12‑4 (MQ=255)
   accgccgcattttgctgtggggaagcggtggGCCg                                 >  1:4781141‑M2/32‑35 (MQ=255)
   accgccgcattttgctgtggggaagcggtggGCCg                                 >  1:8780214‑M2/32‑35 (MQ=255)
    tgccgccctggccggtgaggttCGTggtggggagt                                <  1:5399816‑M1/13‑4 (MQ=255)
    ccgccgcattttgctgtggggaagcggtggggccg                                >  1:1797176‑M2/31‑33 (MQ=255)
    ccgccgcattttgctgtggggaagcggtggGCCgg                                >  1:11043474‑M2/31‑35 (MQ=255)
     gccgccctggccggtgaggttCGTGGTGGGGGGGt                               <  1:3966123‑M1/14‑1 (MQ=255)
      gccgcattttgctgtggggaagcggtggGGGGGtt                              >  1:6452171‑M2/29‑35 (MQ=255)
      ccgccctggccggtgaggttCGTGGTGGggcgttt                              <  1:12257482‑M1/15‑4 (MQ=255)
      ccgccctggccggtgaggttCGTGGTGGGGAGGtt                              <  1:4845574‑M1/15‑1 (MQ=255)
       ccgcattttgctgtggggaagcggtggGGCGTttt                             >  1:14093888‑M2/28‑35 (MQ=255)
       ccgcattttgctgtggggaagcggtggGGCGGttt                             >  1:5297900‑M2/28‑35 (MQ=255)
       ccgcattttgctgtggggaagcggtggGGCGGttt                             >  1:15668275‑M2/28‑35 (MQ=255)
        gccctggccggtgaggttCGTGGTGGGGCGTtttt                            <  1:1951617‑M1/17‑1 (MQ=255)
         gcattttgctgtggggaagcggtggGGCGGTTTTg                           >  1:2032565‑M2/26‑35 (MQ=255)
         gcattttgctgtggggaagcggtggGGCGCTTTTg                           >  1:7678452‑M2/26‑35 (MQ=255)
         ccctggccggtgaggttCGTGGTGGGGCGTTTTTg                           <  1:15085725‑M1/18‑1 (MQ=255)
         ccctggccggtgaggttCGTGGTGGGGAGGTTTTg                           <  1:6061973‑M1/18‑1 (MQ=255)
          cctggccggtgaggttCGTGGTGGGGCggtttttg                          <  1:6977799‑M1/19‑3 (MQ=255)
          cattttgctgtggggaagcggtggGGCGGTTTtgg                          >  1:5376979‑M2/25‑34 (MQ=255)
            ttttgctgtggggaagcggtggGGCGGTtttgggt                        >  1:3011662‑M2/23‑32 (MQ=255)
             cGAATGAATATGCCGTGGTGGGGCGGTTTTGATac                       <  1:19806322/35‑1 (MQ=35)
              gaatgaatATGCCGTGGTGGGGCGGTTTTGATaca                      <  1:16355892/35‑1 (MQ=38)
              gaatgaatATGCCGTGGTGGGGCGGTTTTGATaca                      <  1:18997986/35‑1 (MQ=38)
              gaatgaatATGCCGTGGTGGGGCGGTTTTGATaca                      <  1:840076/35‑1 (MQ=38)
              gaatgaatATGCCGTGGTGGGGCGGTTTTGATaca                      <  1:11268331/35‑1 (MQ=38)
              gaatgaatATGCCGTGGTGGGGCGGTTTTGATaca                      <  1:9076029/35‑1 (MQ=38)
               aatgaatATGCCGTGGTGGGGCGGTTTTGATacac                     <  1:6161216/35‑1 (MQ=40)
               aatgaatATGCCGTGGTGGGGCGGTTTTGATacac                     <  1:1300961/35‑1 (MQ=40)
               aatgaatATGCCGTGGTGGGGCGGTTTTGATacac                     <  1:13634211/35‑1 (MQ=40)
                atgaatATGCCGTGGTGGGGCGGTTTTGATACACg                    <  1:7118960/35‑1 (MQ=255)
                atgaatATGCCGTGGTGGGGCGGTTTTGATACACg                    <  1:19767257/35‑1 (MQ=255)
                atgaatATGCCGTGGTGGGGCGGTTTTGATACACg                    <  1:9152682/35‑1 (MQ=255)
                 tgaatATGCCGTGGTGGGGCGGTTTTGATACACGt                   <  1:14205898/35‑1 (MQ=255)
                 tgaatATGCCGTGGTGGGGCGGTTTTGATACACGt                   <  1:7773621/35‑1 (MQ=255)
                  gaatATGCCGTGGTGGGGCGGTTTTGATACACGTg                  <  1:9377352/35‑1 (MQ=255)
                   aatATGCCGTGGTGGGGCGGTTTTGATACACGTGc                 <  1:16219545/35‑1 (MQ=255)
                   aatATGCCGTGGTGGGGCGGTTTTGATACACGTGc                 <  1:7355718/35‑1 (MQ=255)
                    atatGCCGTGGTGGGGCGGTTTTGATACACGTGCa                <  1:8107820/35‑1 (MQ=255)
                      atGCCGTGGTGGGGCGGTTTTGATACACGTGCATg              <  1:12856018/35‑1 (MQ=255)
                      atGCCGTGGTGGGGCGGTTTTGATACACGTGCATg              <  1:8360912/35‑1 (MQ=255)
                      atGCCGTGGTGGGGCGGTTTTGATACACGTGCATg              <  1:10369568/35‑1 (MQ=255)
                       tGCCGTGGTGGGGCGGTTTTGATACACGTGCATgg             <  1:2720/35‑1 (MQ=255)
                       tGCCGTGGTGGGGCGGTTTTGATACACGTGCATgg             <  1:13077462/35‑1 (MQ=255)
                        gcaGTGGTGGGGCGGTTTTGATACACGTGCATggg            >  1:11956163‑M1/4‑35 (MQ=255)
                        gCCGTGGTGGGGCGGTTTTGATACACGTGCATggg            <  1:3899669/35‑1 (MQ=255)
                        gCCGTGGTGGGGCGGTTTTGATACACGTGCATggg            <  1:5157426/35‑1 (MQ=255)
                        gCCGTGGTGGGGCGGTTTTGATACACGTGCATggg            <  1:20427903/35‑1 (MQ=255)
                        gCCGTGGTGGGGCGGTTTTGATACACGTGCATggg            <  1:5786835/35‑1 (MQ=255)
                         ccGTGGTGGGGCGGTTTTGATACACGTGCATGGGa           <  1:18028030/35‑1 (MQ=255)
                         ccGTGGTGGGGCGGTTTTGATACACGTGCATGGGa           <  1:12862584/35‑1 (MQ=255)
                           GTGGTGGGGCGGTTTTGATACACGTGCATGGGAtg         >  1:11872392‑M1/1‑35 (MQ=255)
                            TGGTGGGGCGGTTTTGATACACGTGCATGGGAtgt        >  1:11251802‑M1/1‑35 (MQ=255)
                            TGGTGGGGCGGTTTTGATACACGTGCATGGGAtgt        >  1:6576126‑M1/1‑35 (MQ=255)
                            TGGTGGGGCGGTTTTGATACACGTGCATGGGAtgt        >  1:14674951‑M1/1‑35 (MQ=255)
                            TGGTGGCGCGGTTTTGATACACGTGCATGGGAtgt        >  1:18501749‑M1/1‑35 (MQ=255)
                             tGTGGGGCGGTTTTGATACACGTGCATGGGAtgtg       >  1:10579384‑M1/2‑35 (MQ=255)
                             GGTGGGGCGGTTTTGATACACGTGCATGGGAtgtg       >  1:12750349‑M1/1‑35 (MQ=255)
                             GGTGGGGCGGTTTTGATACACGTGCATGGGAtgtg       >  1:16406102‑M1/1‑35 (MQ=255)
                              GTGGGGCGGTTTTGATACACGTGCATGGGATGTgg      >  1:19066617‑M1/1‑35 (MQ=255)
                               TGGGGCGGTTTTGATACACGTGCATGGGACGTGGc     >  1:3780888‑M1/1‑35 (MQ=255)
                                GGGGCGGTTTTGATACACGTGCATGGGATGTGGCa    >  1:13106729‑M1/1‑35 (MQ=255)
                                 GGGCGGTTTTGATACACGTGCATGGGATGTGGCaa   >  1:16311343‑M1/1‑35 (MQ=255)
                                 GGGCGGTTTTGATACACGTGCATGGGATGTGGCaa   >  1:18673013‑M1/1‑35 (MQ=255)
                                 GGGCGGTTTTGATACACGTGCATGGGATGTGGCaa   >  1:2249229‑M1/1‑35 (MQ=255)
                                 GGGCGGTTTTGATACACGTGCATGGGANGTGGCaa   >  1:15531745‑M1/1‑35 (MQ=255)
                                  ggCGGTTTTGATACACGTGCATGGGATGTGGCAAg  <  1:15687461/35‑1 (MQ=255)
                                  ggCGGTTTTGATACACGTGCATGGGATGTGGCAAg  <  1:1257928/35‑1 (MQ=255)
                                  |                                  
CGGGCATGGCAAGCGAATGAATATGCCGTGGTGGGGCGGTTTTGATACACGTGCATGGGATGTGGCAAG  >  REL606/558222‑558290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.