New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3483684 =62 (0.600)11 (0.140) 5/36 NT 15.9% coding (2000/2706 nt) malT transcriptional regulator MalT
?REL606 = 3677027 70 (0.910)coding (478/987 nt) yiaO predicted transporter

Only 100 of 167 total aligned reads displayed.

CGATGTCACCAACTCGCGCGCACCGGTTAAAACCCCCGCCGACCTGAAAGGGCTGAAAATCCGCACCAA  >  REL606/3676993‑3677061
                                  |                                  
cgATGTCACCAACTCGCGCGCACCGGTTAAAAccc                                    <  1:2301868/35‑1 (MQ=255)
cgATGTCACCAACTCGCGCGCACCGGTTAAAAccc                                    >  1:18826535/1‑35 (MQ=255)
cgATGTCACCAACTCGCGCGCACCGGTTAAAAccc                                    <  1:5270517/35‑1 (MQ=255)
cgATGTCACCAACTCGCGCGCACCGGTTAAAAccc                                    >  1:8584225/1‑35 (MQ=255)
 gATGTCACCAACTCGCGCGCACCGGTTAAAACCCc                                   <  1:14999907‑M2/35‑2 (MQ=255)
  aTGTCCCCAACTCGCGCGCACCGGTTAAAACCCcc                                  >  1:12579550‑M2/1‑33 (MQ=255)
  aTGTCACCAACTCGCGCGCACCGGTTAAAACCCcc                                  <  1:19071302‑M2/35‑3 (MQ=255)
   tGTCACCAACTCGCTCGCACCGGTTAAAACCCccg                                 <  1:17529718‑M2/35‑4 (MQ=255)
   tGTCACCAACTCGCGCGCACCGGTTAAAACCCccg                                 >  1:14624145‑M2/1‑32 (MQ=255)
    gTCACCAACTCGCGCGCACCGGTTAAAACCCccgc                                <  1:10306367‑M2/35‑5 (MQ=255)
     tCACCAACTCGCGCGCACCGGTTAAAACCCccgcc                               <  1:6087948‑M2/35‑6 (MQ=255)
      cACCAACTCGCGCGCACCGGTTAAAACCCccgccg                              <  1:10345779‑M2/35‑7 (MQ=255)
      cACCAACTCGCGCGCACCGGTTAAAACCCccgccg                              <  1:11596080‑M2/35‑7 (MQ=255)
      cACCAACTCGCGCGCACCGGTTAAAACCCccgccg                              <  1:3545071‑M2/35‑7 (MQ=255)
       aCCAACTCGCGCGCACCGGTTAAAACCCCCGCCGa                             >  1:15068988/1‑35 (MQ=255)
        ccAACTCGCGCGCACCGGTTAAAACCCCCGCCGAc                            >  1:10732666/1‑35 (MQ=255)
        ccAACTCGCGCGCACCGGTTAAAACCCCCGCCGAc                            >  1:10107791/1‑35 (MQ=255)
         cAACTCGCGCGCACCGGTTAAAACCCCCGCCGAcc                           >  1:16137600/1‑35 (MQ=255)
         cAACTCGCGCGCACCGGTTAAAACCCCCGCCGAcc                           >  1:13125276/1‑35 (MQ=255)
           aCTCGCGCGCACCGGTTAAAACCCCCGCCGCCCTg                         >  1:6918288/1‑35 (MQ=255)
           aCTCGCGCGCACCGGTTAAAACCCCCGCCGACCTg                         >  1:17369020/1‑35 (MQ=255)
            cTCGCGCGCACCGGTTAAAACCCCCGCCGACCTGa                        >  1:5093974/1‑35 (MQ=255)
             tCGCGCGCACCGGTTAAAACCCCCGCCGACCTGaa                       >  1:3266839/1‑35 (MQ=255)
             tCGCGCGCACCGGTTAAAACCCCCGCCGACCTGaa                       >  1:16736114/1‑35 (MQ=255)
              cgcgcgCACCGGTTAAAACCCCCGCCGACCTGaaa                      <  1:16611219/35‑1 (MQ=255)
                cgcgcACCGGTTAAAACCCCCGCCGACCTGAAAgg                    >  1:11127960/1‑35 (MQ=255)
                 gcgcACCGGTTAAACCCCCCGCCGACCTGAAAggg                   <  1:15806027/35‑1 (MQ=255)
                 gcgcACCGGTTAAAACCCCCGCCGACCTGAAAggg                   <  1:1975520/35‑1 (MQ=255)
                 gcgcACCGGTTAAAACCCCCGCCGACCTGAAAggg                   >  1:12286677/1‑35 (MQ=255)
                 gcgcACCGGTTAAAACCCCCGCCGACCTGAAAggg                   <  1:3990888/35‑1 (MQ=255)
                  cgcACCGGTTAAAACCCCCGCCGACCTGAAAGGGc                  >  1:18001246/1‑35 (MQ=255)
                  cgcACCGGTTAAAACCCCCGCCGACCTGAAAGGGc                  >  1:4525361/1‑35 (MQ=255)
                  cgcACCGGTAAAACCCCCCGCCGACCTGAAAGGGc                  <  1:10067485/35‑1 (MQ=37)
                   gcACCGGTTAAACCCCCCGCCGACCTGAAAGGGCt                 <  1:1471564/35‑1 (MQ=255)
                   gcACCGGTTAAAACCCCCGCCGACCTGAAAGGGCt                 >  1:5819944/1‑35 (MQ=255)
                    cACGGGTAAAACCCCCCGCCGACCTGAAAGGGCTg                <  1:447816/35‑1 (MQ=25)
                    cACCGGTTAAAACCCCCGCCGACCTGAAAGGGCTg                >  1:1544147/1‑35 (MQ=255)
                     aCCGGTTAAACCCCCCGCCGACCTGAAAGGGCTGa               <  1:5737246/35‑1 (MQ=255)
                     aCCGGTAAAACCCCCCGCCGACCTGAAAGGGCTGa               <  1:20573812/35‑1 (MQ=37)
                      ccGGTTAAAACCCCCGCCGACCTGAAAGGGCTGaa              <  1:16403292/35‑1 (MQ=255)
                      ccGGTTAAAACCCCCGCCGACCTGAAAGGGCTGaa              >  1:17261538/1‑35 (MQ=255)
                      ccGGTTAAAACCCCCGCCGACCTGAAAGGGCTGaa              >  1:17284558/1‑35 (MQ=255)
                       gggTTAAACCCCCCGCCGACCTGAAAGGGCTGaaa             <  1:13018469/34‑1 (MQ=255)
                       cgattAAACCCCCCGCCGACCTGAAAGGGCTGaaa             <  1:1314518/32‑1 (MQ=37)
                       cGGTTAAACCCCCCGCCGACCTGAAAGGGCTGaaa             <  1:9843632/35‑1 (MQ=255)
                       cGGTTAAAACCCCCGCCGACCTGAAAGGGCTGaaa             >  1:11232324/1‑35 (MQ=255)
                       cGGTTAAAACCCCCGCCGACCTGAAAGGGCTGaaa             >  1:4850166/1‑35 (MQ=255)
                       cGGTTAAAACCCCCGCCGACCTGAAAGGGCTGaaa             >  1:7559408/1‑35 (MQ=255)
                       cGGTTAAAACCCCCGCCGACCTGAAAGGGCTGaaa             >  1:9669618/1‑35 (MQ=255)
                       aggTTAAACCCCCCGCCGACCTGAAAGGGCTGaaa             <  1:13824320/34‑1 (MQ=255)
                        ggTTAAAACCCCCGCCGACCTGAAAGGGCTGaaaa            >  1:5865016/1‑35 (MQ=255)
                        ggTTAAAACCCCCGCCGACCTGAAAGGGCTGaaaa            >  1:18823441/1‑35 (MQ=255)
                        ggTTAAAACCCCCGCCGACCTGAAAGGGCTGaaaa            >  1:13915508/1‑35 (MQ=255)
                        ggTTAAAACCCCCGCCGACCTGAAAGGGCTGaaaa            >  1:13608941/1‑35 (MQ=255)
                        ggTTAAAAACCccgccgctgccaactggttgcgtc            >  1:2638936‑M2/1‑11 (MQ=255)
                         ttaaaacCCCCCGCCGACCTGAAAAGGCTGAAAAt           <  1:8743302/32‑1 (MQ=25)
                         gTTAAAACCCccgccgctgccaactggttgcgtca           >  1:3038184‑M2/1‑10 (MQ=255)
                         gTTAAAACCCCCGCCGACCTGAAAGGGCTGAAAAt           >  1:2078395/1‑35 (MQ=255)
                          ttAAAACCCCCGCCGACCTGAAAGTGCTGAAAATc          >  1:15566804/1‑35 (MQ=255)
                          ttAAAACCCCCGCCGACCTGAAAGGGCTGAAAATc          <  1:11652506/35‑1 (MQ=255)
                          tgaaaaccCccgccgctgccaactggttgcgtcat          >  1:3864093‑M2/3‑9 (MQ=255)
                          gtaAAACCCccgccgctgccaactggttgcgtcat          >  1:11025177‑M2/2‑9 (MQ=255)
                           tAAAACCCcagccgctgccaactggttgcgtcata         >  1:4886519‑M2/1‑8 (MQ=255)
                           tAAAACCCCCGCCGACCTGAAAGGGCTGAAAATcc         >  1:16226144/1‑35 (MQ=255)
                           tAAAACCCCCGCCGACCTGAAAGGGCTGAAAATcc         >  1:377723/1‑35 (MQ=255)
                           aaaacCCCCCGCCGACCTGAAAGGGCTGAAAATcc         <  1:7600138/34‑1 (MQ=255)
                            gacacccccgccgctgccaactggttgcgtcatac        >  1:9061215‑M2/4‑7 (MQ=255)
                            aacaCCCccgccgctgccaactggttgcgtcatac        >  1:16284933‑M2/1‑7 (MQ=255)
                            aaacCCCCCGCCGACCTGAAAGGGCTGAAAATCCg        <  1:11942725/35‑1 (MQ=255)
                            aaacCCCCCGCCGACCTGAAAGGGCTGAAAATCCg        <  1:13962380/35‑1 (MQ=255)
                            aaaaCCCccgccgctgccaactggttgcgtcatac        >  1:3680537‑M2/1‑7 (MQ=255)
                            aaaaCCCccgccgctgccaactggttgcgtcatac        >  1:12166284‑M2/1‑7 (MQ=255)
                            aaaaCCCCCGCCGACCTGAAAGGGCTGAAAATCCg        >  1:7439999/1‑35 (MQ=255)
                            aaaaCCCCCGCCGACCTGAAAGGGCTGAAAATCCg        >  1:14470655/1‑35 (MQ=255)
                            aaaaCCCCCGCCGACCTGAAAGGGCTGAAAATCCg        >  1:13435790/1‑35 (MQ=255)
                            aaaaCCCCCGCCGACCTGAAAGGGCTGAAAATCCg        >  1:20383636/1‑35 (MQ=255)
                             tgaccCccgccgctgccaactggttgcgtcatacg       >  1:616238‑M2/3‑6 (MQ=255)
                             aaaCCCccgccgctgccaactggttgcgtcatacg       >  1:17509334‑M2/1‑6 (MQ=255)
                             aaaCCCCCGCCGACCTGAAAGGGCTGAAAATCCGc       >  1:17878345/1‑35 (MQ=255)
                             aaaCCCCCGCCGACCTGAAAGGGCTGAAAATCCGc       >  1:19562792/1‑35 (MQ=255)
                              cacCCccgccgctgccaactggttgcgtcatacgg      >  1:19824252‑M2/2‑5 (MQ=255)
                              aaCCCCCGCCGACCTGAAAGGGCTGAAAATCCGCa      >  1:7932883/1‑35 (MQ=255)
                              aaACCccgccgctgccaactggttgcgtcatacgg      >  1:7639492‑M2/1‑5 (MQ=255)
                               ccccccGCCGACCTGAAAGGGCTGAAAATCCGCAc     <  1:14632783/34‑1 (MQ=255)
                               aCCCccgccgctgccaactggttgcgtcatacggc     >  1:6398681‑M2/1‑4 (MQ=255)
                               aCCCCCGCCGACCTGAAAGGGCTGAAAATCCGCAc     >  1:2372862/1‑35 (MQ=255)
                                cccccgccgctgccaactggttgcgtcatacggct    >  1:813578‑M2/1‑3 (MQ=255)
                                cccccGCCGACCTGAAAGGGCTGAAAATCCGCAcc    <  1:9120480/35‑1 (MQ=255)
                                cccccGCCGACCTGAAAGGGCTGAAAATCCGCAcc    <  1:6357855/35‑1 (MQ=255)
                                 ccccgccgctgccaactggttgcgtcatacggcta   >  1:780707‑M2/1‑2 (MQ=255)
                                 ccccGCCGACGTGAAAGGGCTGAAAATCCGCACca   <  1:7260571/35‑1 (MQ=255)
                                 ccccGCCGACCTGAAAGGGCTGAAAATCCGCACca   <  1:4760890/35‑1 (MQ=255)
                                 ccccGCCGACCTGAAAGGGCTGAAAATCCGCACca   <  1:6082381/35‑1 (MQ=255)
                                 ccccGCCGACCTGAAAGGGCTGAAAATCCGCACca   <  1:8274422/35‑1 (MQ=255)
                                 ccccGCCGACCTGAAAGGGCTGAAAATCAGCACca   <  1:17206065/35‑1 (MQ=255)
                                 ccccACCGACCTGAAAGGGCTGAAAATCCGCACca   <  1:18183456/35‑1 (MQ=255)
                                  cccgccgctgccaactggttgcgtcatacggctaa  >  1:20066823‑M2/1‑1 (MQ=255)
                                  cccgccgctgccaactggttgcgtcatacggctaa  >  1:1806318‑M2/1‑1 (MQ=255)
                                  cccGCCGACCTGAAAGGGCTGAAAATCCGCACcaa  <  1:8897488/35‑1 (MQ=255)
                                  cccGCCGACCTGAAAGGGCTGAAAATCCGCACcaa  >  1:11272181/1‑35 (MQ=255)
                                  |                                  
CGATGTCACCAACTCGCGCGCACCGGTTAAAACCCCCGCCGACCTGAAAGGGCTGAAAATCCGCACCAA  >  REL606/3676993‑3677061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.