New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 331092177 (0.750)8 (0.110) 3/34 NT 15.0% coding (824/1068 nt) degS serine endoprotease, periplasmic
?REL606 4603001 = 36 (0.490)coding (287/780 nt) yjjV predicted DNase

Only 100 of 184 total aligned reads displayed.

CGCGAGATCGCACCACTGCACGCACAGAGCGGTGGTATAGATCAACTGCAAGGGATCGTGGTTAATGAA  >  REL606/3310887‑3310955
                                  |                                  
cgcgAGATCGCACCACTGCACGCACATAGCGGTGG                                    >  1:16518741‑M1/1‑35 (MQ=255)
cgcgAGATCGCACCACTGCACGCACAGAGCGGTGG                                    <  1:18934222‑M1/35‑1 (MQ=255)
 gcgAGATCGCACCACTGCACGCACAGAGCggtggt                                   <  1:16086006/35‑1 (MQ=255)
 gcgAGATCGCACCACTGCACGCACAGAGCggtggt                                   <  1:650713/35‑1 (MQ=255)
 gcgAGATCGCACCACTGCACGCACAGAGCGGTGGg                                   >  1:4388828‑M1/1‑34 (MQ=255)
 gcgAGATCGCACCACTGCACGCACAGAGCGGTGGg                                   >  1:4683564‑M1/1‑34 (MQ=255)
 gcgAGATCGCACCACTGCACGCACAGAGCGGTGGg                                   >  1:13177332‑M1/1‑34 (MQ=255)
 gcgAGATCGCACAACTGCACGCACAGAGCggtggt                                   <  1:4571362/35‑1 (MQ=255)
  cgAGATCGCACCACTGCACGCACAGAGCGGTGGta                                  <  1:10143075/35‑1 (MQ=255)
  cgAGATCGCACCACTGCACGCACAGAGCGGTGGgg                                  >  1:20425053‑M1/1‑33 (MQ=255)
  cgAGATCGCACCACTGCACGCACAGAGCGGTGGgg                                  >  1:3848001‑M1/1‑33 (MQ=255)
   gagaTCGCACCACTGCACGCACAGAGCGGTGGtat                                 <  1:6180494/35‑1 (MQ=255)
   gagaTCGCACCACTGCACGCACAGAGCGGTGGtat                                 <  1:12146886/35‑1 (MQ=255)
   gagaTCGCACCACTGCACGCACAGAGCGGTGGtat                                 <  1:5818409/35‑1 (MQ=255)
   gagaTCGCACCACTGCACGCACAGAGCGGTGGtat                                 <  1:1987492/35‑1 (MQ=255)
   gagaTCGCACCACTGCACGCACAGAGCGGTGGtat                                 <  1:20295169/35‑1 (MQ=255)
   gagaTCGCACCACTGCACGCACAGAGCGGTGGtat                                 <  1:2631133/35‑1 (MQ=255)
   gagaTCGCACCACTGCACGCACAGAGCGGTGGggt                                 >  1:1079402‑M1/1‑32 (MQ=255)
   gagaTCGCACCACTGCACGCACAGAGCGGTGGggt                                 >  1:2155901‑M1/1‑32 (MQ=255)
   gagaTCGCACCACTGCACGCACAGAGCGGTGGggg                                 >  1:14453017‑M1/1‑32 (MQ=255)
    agaTCGCACCACTGCACGCACAGAGCGGTGGtata                                <  1:2988667/35‑1 (MQ=255)
    agaTCGCACCACTGCACGCACAGAGCGGTGGggtc                                >  1:8604518‑M1/1‑31 (MQ=255)
     gaTCGCACCACTGCACGCACAGAGCGGTGGggtag                               >  1:2018311‑M1/1‑30 (MQ=255)
     gaTCGCACCACTGCACGCACAGAGCGGTGGggtag                               >  1:17451229‑M1/1‑30 (MQ=255)
     gaTCGCACCACTGCACGCACAGAGCGGTGGggtag                               >  1:5295713‑M1/1‑30 (MQ=255)
     gaTCGCACCACTGCACGCACAGAGCGGTGGggccc                               >  1:18632016‑M1/1‑30 (MQ=255)
     gaTCGCACCACTGCACGCACAGAGCGGTGGTATAg                               <  1:9013080/35‑1 (MQ=255)
      aTCGCACCACTGCACGCACAGAGCGGTGGgggagg                              >  1:4472139‑M1/1‑29 (MQ=255)
      aTCGCACCACTGCACGCACAGAGCGGTGGTATAGa                              <  1:7490509/35‑1 (MQ=255)
       tCGCACCACTGCACGCACAGAGCGGTGGgggagat                             >  1:4171119‑M1/1‑28 (MQ=255)
       tCGCACCACTGCACGCACAGAGCGGTGGTATAGAt                             <  1:1430450/35‑1 (MQ=255)
        cGCACCACTGCACGCACAGAGCGGTGGggtagatc                            >  1:7283460‑M1/1‑27 (MQ=255)
        cGCACCACTGCACGCACAGAGCGGTGGTATAGATc                            <  1:17194177/35‑1 (MQ=255)
         gCACCACTGCACGCACAGAGCGGTGGggtagatca                           >  1:8755187‑M1/1‑26 (MQ=255)
         gCACCACTGCACGCACAGAGCGGTGGTATAGATCa                           <  1:19647913/35‑1 (MQ=255)
          caccacTGCACGCACAGAGCGGTGGTATAGATCaa                          <  1:14402649/35‑1 (MQ=255)
           accacTGCACGCACAGAGCGGTGGGGTAGATAAAc                         >  1:20552364/1‑35 (MQ=25)
            ccacTGCACGCACAGAGCGGTGGTATAGATCAACt                        <  1:19145320/35‑1 (MQ=255)
             cacTGCACGCACAGAGCGGTGGTATAGATCAACTg                       <  1:3459880/35‑1 (MQ=255)
             cacTGCACGCACAGAGCGGTGGTATAGATCAACTg                       <  1:7820676/35‑1 (MQ=255)
             cacTGCACGCACAGAGCGGTGGTATAGATCAACTg                       <  1:18460568/35‑1 (MQ=255)
             cacTGCACGCACAGAGCGGTGGTATAGATCAACTg                       <  1:17055204/35‑1 (MQ=255)
             cacTGCACGCACAGAGCGGTGGGGTAGATAAACTg                       >  1:4062120/1‑35 (MQ=25)
             cacTGCACGCACAGAGCGGTGGGGGAGATCaaacg                       >  1:5828271/1‑32 (MQ=16)
              acTGCACGCACAGAGCGGTGGGGTAGATCAAATGc                      >  1:15796404/1‑35 (MQ=25)
               cTGCACGCACAGAGCGGTGGTATAGATCAACTGCa                     <  1:9311997/35‑1 (MQ=255)
               cTGCACGCACAGAGCGGTGGGGTAGAACAACTGCa                     >  1:17290023/1‑35 (MQ=25)
                tGCACGCACAGAGCGGTGGTATAGATCAACTGCaa                    <  1:19180505/35‑1 (MQ=255)
                tGCACGCACAGAGCGGTGGTATAGATCAACTGCaa                    <  1:19243679/35‑1 (MQ=255)
                  cacgcacAGAGCGGTGGTATAGATCAACTGCAAgg                  <  1:17921994/35‑1 (MQ=255)
                  cacgcacAGAGCGGTGGTATAGATCAACTGCAAgg                  <  1:16734019/35‑1 (MQ=255)
                   acgcacAGAGCGGTGGTATAGATCAACTGCAAggg                 <  1:15068851/35‑1 (MQ=255)
                    cgcacAGAGCGGTGGTATAGATCAACTGCAAGGGa                <  1:12876705/35‑1 (MQ=255)
                    cgcacAGAGCGGTGGTATAGATCAACTGCAAGGGa                <  1:20508341/35‑1 (MQ=255)
                      cacaGAGCGGTGGTATAGATCAACTGCAAGGGATc              <  1:13996991/35‑1 (MQ=255)
                       acaGAGCGGTGGTATAGATCAACTGCAAGGGATCg             <  1:15648810/35‑1 (MQ=255)
                       acaGAGCGGTGGTATAGATCAACTGCAAGGGATCg             <  1:20553151/35‑1 (MQ=255)
                       acaGAGCGGTGGTATAGATCAACTGCAAGGGATCg             <  1:10304389/35‑1 (MQ=255)
                        caGAGCGGTGGTATAGATCAACTGCAAGGGATCGt            <  1:11481807/35‑1 (MQ=255)
                        caGAGCGGTGGTATAGATCAACTGCAAGGGATCGt            <  1:18327055/35‑1 (MQ=255)
                         agagCGGTGGTATAGATCAACTGCAAGGGATCGTg           <  1:6716356/35‑1 (MQ=255)
                         agagAGGTGGTATAGATCAACTGCAAGGGATCGTg           <  1:13531594/35‑1 (MQ=255)
                           agCGGTGGTATAGATCAACTGCAAGGGATCGTGGt         <  1:1795407/35‑1 (MQ=255)
                           agCGGTGGTATAGATCAACTGCAAGGGATCGTGGt         <  1:7707131/35‑1 (MQ=255)
                           agCGGTGGTATAGATCAACTGCAAGGGATCGTGGt         <  1:14171077/35‑1 (MQ=255)
                           agCGGTGGTATAGATCAACTGCAAGGGATCGTGGt         <  1:17001011/35‑1 (MQ=255)
                            gccgtgggggagatcggtctggatctctttggcga        <  1:1307703‑M1/32‑29 (MQ=255)
                            gCGGTGGgggagatcggtctggatctctttggcga        <  1:5546286‑M1/35‑29 (MQ=255)
                            gCGGTGGgggagatcggtctggatctctttggcga        >  1:4960205‑M1/1‑7 (MQ=255)
                            gCGGTGGgggagatcggtctggatctctttggcga        <  1:4416061‑M1/35‑29 (MQ=255)
                            gCGGTGGTATAGATCAACTGCAAGGGATCGTGGtt        <  1:9860262/35‑1 (MQ=255)
                            gCGGTGGTATAGATCAACTGCAAGGGATCGTGGtt        <  1:347356/35‑1 (MQ=255)
                             cGGTGGgggagatcggtctggatctctttggcgac       <  1:117376‑M1/35‑30 (MQ=255)
                             cGGTGGTATAGATCAACTGCAAGGGATCGTGGTTa       <  1:19451003/35‑1 (MQ=255)
                              ggtggtATAGATCAACTGCAAGGGATCGTGGTTaa      >  1:11057697/1‑35 (MQ=255)
                              ggtggtATAGATCAACTGCAAGGGATCGTGGTTaa      <  1:11945701/35‑1 (MQ=255)
                              ggTGGgggagatcggtctggatctctttggcgacg      >  1:18109663‑M1/1‑5 (MQ=255)
                              ggTGGgggagatcggtctggatctctttggcgacg      >  1:6990160‑M1/1‑5 (MQ=255)
                               gtggtATAGATCAACTGCAAGGTATCGTGGTTAAt     >  1:2313499/1‑35 (MQ=255)
                               gtggtATAGATCAACTGCAAGGGATCGTGGTTAAt     >  1:9474424/1‑35 (MQ=255)
                               gtggtATAGATCAACTGCAAGGGATCGTGGTTAAt     <  1:3142390/35‑1 (MQ=255)
                               gtggtATAGATCAACTGCAAGGGATCGTGGTTAAt     <  1:5147539/35‑1 (MQ=255)
                               gtggtATAGATCAACTGCAAGGGATCGTGGTTAAt     <  1:6814636/35‑1 (MQ=255)
                               gTGGgggagatcggtctggatctctttggcgacga     >  1:17706931‑M1/1‑4 (MQ=255)
                               gTGGgggagatcggtctggatctctttggcgacga     <  1:15287085‑M1/35‑32 (MQ=255)
                                tggtATAGATCAACTGCAAGGGATCGTGGTTAATg    <  1:4202057/35‑1 (MQ=255)
                                tGGgggagatcggtctgtatctctttggcgacgat    >  1:8540497‑M1/1‑3 (MQ=255)
                                tGGgggagatcggtctggatctctttggcgacgat    <  1:10611201‑M1/35‑33 (MQ=255)
                                 ggtATAGATCAACTGCAAGGGATCGTGGTTAATGa   <  1:15962497/35‑1 (MQ=255)
                                 ggtATAGATCAACTGCAAGGGATCGTGGTTAATGa   >  1:13249788/1‑35 (MQ=255)
                                 ggtATAGATCAACTGCAAGGGATCGTGGTTAATGa   >  1:18998602/1‑35 (MQ=255)
                                 gggggagatcggtctggatctctttggcgacgatc   >  1:291380‑M1/1‑2 (MQ=255)
                                 gggggagatcggtctggatctctttggcgacgatc   >  1:16633455‑M1/1‑2 (MQ=255)
                                 gggggagatcggtctggatctctttggcgacgatc   >  1:7335806‑M1/1‑2 (MQ=255)
                                 gggggagatcggtatggatctctttggcgacgatc   >  1:3518159‑M1/1‑2 (MQ=255)
                                  gtATAGATCAACTGCAAGGGATCGTGGTTAATGaa  >  1:16171325/1‑35 (MQ=255)
                                  gtATAGATCAACTGCAAGGGATCGTGGTTAATGaa  <  1:11111980/35‑1 (MQ=255)
                                  ggggagatcggtctggatctctttggcgacgatcc  >  1:3187240‑M1/1‑1 (MQ=255)
                                  ggggagatcggtctggatctctttggcgacgatcc  >  1:18051980‑M1/1‑1 (MQ=255)
                                  ggggagatcggtctggatctctttggcgacgatcc  >  1:14712836‑M1/1‑1 (MQ=255)
                                  |                                  
CGCGAGATCGCACCACTGCACGCACAGAGCGGTGGTATAGATCAACTGCAAGGGATCGTGGTTAATGAA  >  REL606/3310887‑3310955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.