New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 180751 =70 (0.680)8 (0.080) 5/46 NT 13.4% coding (554/801 nt) yadT vitamin B12‑transporter protein BtuF
?REL606 3966540 = 36 (0.370)intergenic (‑56/‑97) ECB_03694/ECB_03695 conserved hypothetical protein/Magnesium and cobalt transport protein corA

Only 100 of 123 total aligned reads displayed.

CCAGGGAACCCGGCTGTCTTTAAAGATGTTTTCTCCGCCACAAACTTCGAGTACCTGGTTTTGAATCGA  >  REL606/180717‑180785
                                  |                                  
ccAGGGAACCCGGCTGTCTTTAAAGATGTTTtctc                                    <  1:6763490/35‑1 (MQ=255)
ccAGGGAACCCGGCTGTCTTTAAAGATGTTTtctc                                    <  1:83796/35‑1 (MQ=255)
ccAGGGAACCCGGCTGTCTTTAAAGATGTTTtctc                                    <  1:18247507/35‑1 (MQ=255)
ccAGGGAACCCGGCTGTCTTTAAAGATGTTTtctc                                    <  1:14966391/35‑1 (MQ=255)
 cAGGGAACCCGGCTGTCTTTAAAGATGTTTTCTcc                                   <  1:1179886/35‑1 (MQ=255)
 cAGGGAACCCGGCTGTCTTTAAAGATGTTTTCTcc                                   <  1:699805/35‑1 (MQ=255)
 cAGGGAACCCGGCTGTCTTTAAAGATGTTTTCTcc                                   <  1:17569786/35‑1 (MQ=255)
  aGGGAACCCGGCTGTCTTTAAAGATGTTTTCTCCg                                  <  1:7265210/35‑1 (MQ=255)
  aGGGAACCCGGCTGTCTTTAAAGATGTTTTCTCCg                                  <  1:3241333/35‑1 (MQ=255)
  aGGGAACCCGGCTGTCTTTAAAGATGTTTTCTACg                                  <  1:9001662/35‑1 (MQ=255)
   gggAACCCGGCTGTCTTTAAAGATGTTTTCTCCGc                                 <  1:616850/35‑1 (MQ=255)
   gggAACCCGGCTGTCTTTAAAGATGTTTTCTCCGc                                 <  1:6242109/35‑1 (MQ=255)
    ggAGCCCGGCTGTCTTTAAAGATGTTTTCTCCGcc                                <  1:17900956/35‑1 (MQ=255)
    ggAACCCGGCTGTCTTTAAAGATGTTTTCTCCGcc                                <  1:351157/35‑1 (MQ=255)
     gAACCCTGCTGTCTTTAAAGATGTTTTCTCCGCca                               >  1:17881332/1‑35 (MQ=255)
     gAACCCGGCTGTCTTTAAAGATGTTTTCTCGGCca                               <  1:7769259/35‑1 (MQ=255)
     gAACCCGGCTGTCTTTAAAGATGTTTTCTCCGCca                               <  1:14032647/35‑1 (MQ=255)
     gAACCCGGCTGTCTTTAAAGATGTTTTCTCCGCca                               <  1:15618111/35‑1 (MQ=255)
     gAACCCGGCTGTCTTTAAAGATGTTTTCTCCGCca                               <  1:12226946/35‑1 (MQ=255)
       aCCCGGCTGTCTTTAAAGATGTTTTCTCCGCccca                             >  1:590476/1‑35 (MQ=255)
       aCCCGGCTGTCTTTAAAGATGTTTTCTCCGCcaca                             >  1:13947763/1‑35 (MQ=255)
       aCCCGGCTGTCTTTAAAGATGTTTTCTCCGCcaca                             >  1:6501373/1‑35 (MQ=255)
       aCCCGGCTGTCTTTAAAGATGTTTTCTCCGCcaca                             >  1:19973566/1‑35 (MQ=255)
            gCTGTCTTTAAAGATGTTTTCTCCGCCACAAACtt                        >  1:1369854/1‑35 (MQ=255)
            gCTGTCTTTAAAGATGTTTTCTCCGCCACAAACtt                        >  1:2964060/1‑35 (MQ=255)
            gCTGTCTTTAAAGATGTTTTCTCCGCCACAAACtt                        >  1:5039463/1‑35 (MQ=255)
            gCTGTCTTTAAAGATGTTTTCTCCGCCACAAACtt                        >  1:5285351/1‑35 (MQ=255)
            gCTGTCTTTAAAGATGTTTTCTCCGCCACAAACtt                        >  1:15363108/1‑35 (MQ=255)
            gCTGTCTTTAAAGATGTTTTCTCCGCCACAAACtt                        >  1:19773449/1‑35 (MQ=255)
             cTGTCTTTAAAGATGTTTTCTCCGCCACAAACTTc                       >  1:16808012/1‑35 (MQ=255)
             cTGTCTTTAAAGATGTTTTCTCCGCCACAAACTTc                       >  1:1589861/1‑35 (MQ=255)
             cTGTCTTTAAAGATGTTTTCTCCGCCACAAACTTc                       >  1:15257368/1‑35 (MQ=255)
              tGTCTTTAAAGATGTTTTCTCCGCCACAAACTTCg                      >  1:10103710/1‑35 (MQ=255)
              tGTCTTTAAAGATGTTTTCTCCGCCACAAACTTCg                      >  1:18899919/1‑35 (MQ=255)
              tGTCTTTAAAGATGTTTTCTCCGCCACAAACTTCg                      >  1:13094862/1‑35 (MQ=255)
              tGTCTTTAAAGATGTTTTCTCCGCCACAAACTTCg                      >  1:12267647/1‑35 (MQ=255)
              tGTCTTTAAAGATGTTTTCTCCGCCACAAACTTCg                      >  1:3813851/1‑35 (MQ=255)
               gTCTTTAAAGATGTTTTCTCCGCCACAAACTTCGa                     >  1:18925833/1‑35 (MQ=255)
               gTCTTTAAAGATGTTTTCTCCGCCACAAACTTCGa                     >  1:15480333/1‑35 (MQ=255)
                tCTTTAAAGATGTTTTCTCCGCCACAAACTTCGAg                    >  1:6559619/1‑35 (MQ=255)
                 tttaaaatttttttcccCCGCCACAAACTTCGAGt                   >  1:9701890‑M1/18‑35 (MQ=255)
                 cTTTAAAGATGTTTTCTCCGCCACAAACTTCGAGt                   >  1:18798109/1‑35 (MQ=255)
                  tttAAAGATGTTTTCTCCGCCACAAACTTCGAGTa                  >  1:1291014/1‑35 (MQ=255)
                  tttAAAGATGTTTTCTCCGCCACAAACTTCGAGTa                  >  1:2321545/1‑35 (MQ=255)
                  tttAAAGATGTTTTCTCCGCCACAAACTTCGAGTa                  >  1:2882814/1‑35 (MQ=255)
                  tttAAAGATGTTTTCTCCGCCACAAACTTCGAGTa                  >  1:2033312/1‑35 (MQ=255)
                  ttaaaaGTTTTTTCCCCCGCCACAAACTTCGAGTa                  <  1:10934917/32‑1 (MQ=16)
                    tAAAGATGTTTTCTCCGCCACAAACTTCGAGTAcc                >  1:1714903/1‑35 (MQ=255)
                    tAAAGATGTTTTCTCCGCCACAAACTTCGAGTAcc                >  1:3141856/1‑35 (MQ=255)
                     aaaGTTGTTTCCCCCGCCACAAACTTCGAGTACCt               <  1:10761838/35‑1 (MQ=25)
                     aaaGATGTTTTCTCCGCCACAAACTTCGAGTACCt               >  1:6391824/1‑35 (MQ=255)
                      aaGATTTTTCCCCCGCCACAAACTTCGAGTACCTg              <  1:5710820/35‑1 (MQ=25)
                      aaGATGTTTTCTCCTCCACAAACTTCGAGTACCTg              >  1:4527847/1‑35 (MQ=255)
                      aaGATGTTTTCTCCGCCACAAACTTCGAGTACCTg              >  1:5418121/1‑35 (MQ=255)
                      aaGATGTTTTCTCCGCCACAAACTTCGAGTACCTg              >  1:4432531/1‑35 (MQ=255)
                      aaGATGTTTTCTCCGCCACAAACTTCGAGTACCTg              >  1:5931296/1‑35 (MQ=255)
                       aGATGTTTTCTCCGCCACAAACTTCGAGTACCTgg             >  1:887929/1‑35 (MQ=255)
                       aGATGTTTTCTCCGCCACAAACTTCGAGTACCTgg             >  1:830139/1‑35 (MQ=255)
                       aGATGTTTTCTCCGCAACAAACTTCGAGTACCTgg             <  1:18888556/35‑1 (MQ=255)
                        gttttttcccCCGCCACAAACTTCGAGTACCTGGt            >  1:13777568‑M1/11‑35 (MQ=255)
                        gATGTTTTCTCCGCCACAAACTTCGAGTACCTGGt            >  1:13199261/1‑35 (MQ=255)
                         ttttttcccCCGCCACAAACTTCGAGTACCTGGtt           >  1:17666541‑M1/10‑35 (MQ=255)
                         ttttttcccCCGCCACAAACTTCGAGTACCTGGtt           >  1:3230551‑M1/10‑35 (MQ=255)
                         aTGTTTTCTCCGCCACAAACTTCGAGTACCTGGtt           >  1:9833265/1‑35 (MQ=255)
                         aTGTTTTCTCCGCCACAAACTTCGAGTACCTGGtt           >  1:1869156/1‑35 (MQ=255)
                          tGTTTTCTCCGCCACAAACTTCGAGTACCTGGttt          >  1:2318249/1‑35 (MQ=255)
                          tGTTTTCTCCGCCACAAACTTCGAGTACCTGGttt          >  1:12692148/1‑35 (MQ=255)
                          tGTTTCCCCCGCCACAAACTTCGAGTACCTGGttt          <  1:9085609/35‑1 (MQ=37)
                          tGTTTCCCCCGCCACAAACTTCGAGTACCTGGttt          <  1:2166230/35‑1 (MQ=37)
                           ttttcccCCGCCACAAACTTCGAGTACCTGGtttt         >  1:13554901‑M1/8‑35 (MQ=255)
                           gTTTTCTCCGCCACAAACTTCGAGTACCTGGtttt         >  1:9768381/1‑35 (MQ=255)
                           gTTTTCTACGCCACAAACTTCGAGTACCTGGtttt         <  1:1941946/35‑1 (MQ=255)
                           gTTTTCCCCGCCACAAACTTCGAGTACCTGGtttt         <  1:4543733/35‑1 (MQ=255)
                            ttttCTCCGCCACAAACTTCGAGTACCTGGTTTTg        >  1:7037197/1‑35 (MQ=255)
                            ttttCTCCGCCACAAACTTCGAGTACCTGGTTTTg        >  1:9854363/1‑35 (MQ=255)
                            ttttCTCCGCCACAAACTTCGAGTACCTGGTTTTg        >  1:4751847/1‑35 (MQ=255)
                            tttcccCCGCCACAAACTTCGAGTACCTGGTTTTg        >  1:13617395‑M1/7‑35 (MQ=255)
                            tttcccCCGCCACAAACTTCGAGTACCTGGTTTTg        >  1:15545006‑M1/7‑35 (MQ=255)
                             tttccCCGCCACAAACTTCGAGTACCTGGTTTTGa       >  1:12288653‑M1/6‑35 (MQ=255)
                             tttCTCCGCCACAAACTTCGAGTACCTGGTTTTGa       >  1:2787135/1‑35 (MQ=255)
                             tttCTCCGCCACAAACTTCGAGTACCTGGTTTTGa       >  1:1402594/1‑35 (MQ=255)
                               tctcCGCCACAAACTTCGAGTACCTGGTTTTGAAt     >  1:16461859/1‑35 (MQ=255)
                               cccCCGCCACAAACTTCGAGTACATGGTTTTGAAt     >  1:14300648‑M1/4‑35 (MQ=255)
                                ctcCGCCACAAACTTCGAGTACCTGGTTTTGAATc    >  1:2170314/1‑35 (MQ=255)
                                ctcCGCCACAAACTTCGAGTACCTGGTTTTGAATc    >  1:6532881/1‑35 (MQ=255)
                                ccCCGCCACAAACTTCGAGTACCTGGTTTTGAATc    >  1:935268‑M1/3‑35 (MQ=255)
                                ccCCGCCACAAACTTCGAGTACCTGGTTTTGAATc    >  1:7753169‑M1/3‑35 (MQ=255)
                                 tcCGCCACAAACTTCGAGTACCTGGTTTTGAATCg   >  1:16532865/1‑35 (MQ=255)
                                 tcCGCCACAAACTTCGAGTACCTGGTTTTGAATCg   >  1:2862340/1‑35 (MQ=255)
                                 cCCGCCACAAACTTCGAGTACCTGGTTTTGAATCg   >  1:1610962‑M1/2‑35 (MQ=255)
                                 cCCGCCACAAACTTCGAGTACCTGGTTTTGAATCg   >  1:8127048‑M1/2‑35 (MQ=255)
                                 cCCGCCACAAACTTCGAGTACCTGGTTTTGAATCg   >  1:14235025‑M1/2‑35 (MQ=255)
                                 cCCGCCACAAACTTCGAGTACCTGGTTTTGAATCg   >  1:12801506‑M1/2‑35 (MQ=255)
                                 cCCGCCACAAACTTCGAGTACCTGGTTTTGAATCg   >  1:12748157‑M1/2‑35 (MQ=255)
                                 cCCGCCACAAACTTCGAGTACCTGGTTTTGAATCg   >  1:10042545‑M1/2‑35 (MQ=255)
                                  CCGCCACAAACTTCGAGTACCTGGTTTTGAATCGa  <  1:14701398‑M1/35‑1 (MQ=255)
                                  CCGCCACAAACTTCGAGTACCTGGTTTTGAATCGa  >  1:1763758‑M1/1‑35 (MQ=255)
                                  CCGCCACAAACTTCGAGTACCTGGTTTTGAATCGa  >  1:19729211‑M1/1‑35 (MQ=255)
                                  CCGCCACAAACTTCGAGTACCTGGTTTTGAATCGa  <  1:4350237‑M1/35‑1 (MQ=255)
                                  CCGCCACAAACTTCGAGTACCTGGTTTTGAATCGa  >  1:10146962‑M1/1‑35 (MQ=255)
                                  |                                  
CCAGGGAACCCGGCTGTCTTTAAAGATGTTTTCTCCGCCACAAACTTCGAGTACCTGGTTTTGAATCGA  >  REL606/180717‑180785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.