New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2933125 =46 (0.450)11 (0.140) 5/38 NT 16.9% coding (1669/2874 nt) gcvP glycine dehydrogenase
?REL606 = 3606341 72 (0.890)coding (1517/2076 nt) yhjG predicted outer membrane biogenesis protein

Only 100 of 135 total aligned reads displayed.

TGCATACAAACGGCGTCGTAACCGGTCAGTTTCACCAGCCAGTCAGCCAGCTGCGCAATCATCTGCTGA  >  REL606/2933091‑2933159
                                  |                                  
tGCATACAAACGGCGTCGTAACCGGTCAGTTTCAc                                    >  1:10273088/1‑35 (MQ=255)
ctaccgcgtagttccgcgtcaccgttcatttcccc                                    <  1:4051884‑M1/1‑1 (MQ=255)
ctaccgcgtagttccgcgtcaccgttcatttcccc                                    <  1:12625134‑M1/1‑1 (MQ=255)
ctaccgcgtagttccgcgtcaccgttcatttcccc                                    <  1:14784399‑M1/1‑1 (MQ=255)
ctaccgcgtagttccgcgtcaccgttcatttcccc                                    <  1:16581438‑M1/1‑1 (MQ=255)
 taccgcgtagttccgcgtcaccgttcatttccccc                                   <  1:16558874‑M1/2‑1 (MQ=255)
 gCATACAAACGGCGTCGTAACCGGTCAGTTTCAcc                                   >  1:11805154/1‑35 (MQ=255)
 ccATACAAGCGGCGTCGTAACCGGTCAGTTTCAcc                                   <  1:14147388/34‑1 (MQ=255)
  cATACAAACGGCGTCGTAACCGGTCAGTTTCAcca                                  <  1:16845833/35‑1 (MQ=255)
  cATACAAACGGCGTCGTAACCGGTCAGTTTCAcca                                  >  1:6717443/1‑35 (MQ=255)
  cATACAAACGGCGTCGTAACCGGTCAGTTTCAcca                                  <  1:7579947/35‑1 (MQ=255)
  cATACAAACGGCGTCGTAACCGGTCAGTTTCAcca                                  <  1:13274309/35‑1 (MQ=255)
  accgcgtagttccgcgtcaccgttcatttccccca                                  >  1:1636007‑M1/33‑35 (MQ=255)
  accgcgtagttccgcgtcaccgttcatttccccca                                  <  1:8397690‑M1/3‑1 (MQ=255)
  accgcgtagttccgcgtcaccgttcatttccccca                                  >  1:4308732‑M1/33‑35 (MQ=255)
   ccgcgtagttccgcgtcaccgttcatttcccccag                                 >  1:11245360‑M1/32‑35 (MQ=255)
   ccgcgtagttccgcgtcaccgttcatttcccccag                                 >  1:16277549‑M1/32‑35 (MQ=255)
   ccgcgtagttccgcgtcaccgttcatttcccccag                                 >  1:18218285‑M1/32‑35 (MQ=255)
   ccgcgtagttccgcgtcaccgttcatttcccccag                                 >  1:754549‑M1/32‑35 (MQ=255)
   ccgcgtagttccgcgtcaccgttcatttccccaag                                 >  1:5482577‑M1/32‑32 (MQ=255)
   aTACAAACGGCGTCGTAACCGGTCAGTTTCAcctg                                 <  1:5064539/35‑3 (MQ=255)
   aTACAAACGGCGTCGTAACCGGTCAGTTTCAccag                                 >  1:7350942/1‑35 (MQ=255)
   aTACAAACGGCGTCGTAACCGGTCAGTTTCAccag                                 >  1:10569470/1‑35 (MQ=255)
   aTACAAACGGCGTCGTAACCGGTCAGTTTCAccag                                 >  1:4430217/1‑35 (MQ=255)
   aTACAAACGGAGTCGTAACCGGTCAGTTTCAccag                                 >  1:6387285/1‑35 (MQ=255)
    tACAAACGGCGTCGTAACCGGTCAGTTTCAccagc                                <  1:3808141/35‑1 (MQ=255)
    tACAAACGGCGTCGTAACCGGTCAGTTTCAccagc                                >  1:17177702/1‑35 (MQ=255)
    tACAAACGGCGTCGTAACCGGTCAGTTTCAccagc                                >  1:15283310/1‑35 (MQ=255)
    cgcgtagttccgcgtcaccgttcatttcccccagc                                <  1:16864170‑M1/5‑1 (MQ=255)
    cgcgtagttccgcgtcaccgttcatttcccccagc                                >  1:10897613‑M1/31‑35 (MQ=255)
     aCAAACGGCGTCGTAACCGGTCAGTTTCAccagcc                               <  1:4246499/35‑1 (MQ=255)
     aCAAACGGCGTCGTAACCGGTCAGTTTCAccagcc                               >  1:461278/1‑35 (MQ=255)
      cAACCGGCGTGGTAACCGGTCAGTTTCAccagcca                              <  1:13103984/35‑1 (MQ=37)
       aaaCGGCGTCGTAACCGGTCAGTTTCAccagccag                             <  1:17872482/35‑1 (MQ=255)
       aaaCGGCGTCGTAACCGGTCAGTTTCAccagccag                             >  1:4850289/1‑35 (MQ=255)
        aaCGGCGTCGTAACCGGTCAGTTTCACCAGCCAGt                            >  1:5206066/1‑35 (MQ=255)
        aaCGGCGTCGTAACCGGTCAGTTTCACCAGCCAGt                            >  1:2676943/1‑35 (MQ=255)
        aaCGGCGTCGTAACCGGTCAGTTTCACCAGCCAGt                            >  1:9245933/1‑35 (MQ=255)
           ggCGTCGTAACCGGTCAGTTTCACCAGCCAGTcag                         >  1:18293626/1‑35 (MQ=255)
             cgtcgtAACCGGTCAGTTTCACCAGCCAGTcagcc                       >  1:203071/1‑35 (MQ=255)
              gtcgtAACCGGTCAGTTTCACCAGCCAGTcagcca                      >  1:19455358/1‑35 (MQ=255)
               tcgtAACCGGTCAGTTTCACCAGCCAGTcagccag                     >  1:2728632/1‑35 (MQ=255)
                 gtAACCGGTCAGTTTCACCAGCCAGTCAGCCAGCt                   >  1:331061/1‑35 (MQ=255)
                 gtAACCGGTCAGTTTCACCAGCCAGTCAGCCAGCt                   >  1:5331189/1‑35 (MQ=255)
                 gtAACCGGTCAGTTTCACCAGCCAGTCAGCCAGCt                   >  1:11801013/1‑35 (MQ=255)
                 gtAACCGGTCAGTTTCACCAGCCAGTCAGCCAGCt                   >  1:18587552/1‑35 (MQ=255)
                 gtAACCGGTCAGTTTCACCAGCCAGTCAGCCAGCt                   >  1:8042108/1‑35 (MQ=255)
                  tAACCGGTCAGTTTCACCAGCCAGTCAGCCAGCTg                  >  1:12160119/1‑35 (MQ=255)
                  tAACCGGTCAGTTTCACCAGCCAGTCAGCCAGCTg                  >  1:13036246/1‑35 (MQ=255)
                  tAACCGGTCAGTTTCACCAGCCAGTCAGCCAGCTg                  >  1:17460727/1‑35 (MQ=255)
                   aaCCGGTCAGTTTCACCAGCCAGTCAGCCAGCTgc                 >  1:14286019/1‑35 (MQ=255)
                    aCCGGTCAGTTTCACCAGCCAGTCAGCCAGCTgcg                >  1:16337150/1‑35 (MQ=255)
                     ccGGTCAGTTTCACCAGCCAGTCAGCCAGCTgcgc               >  1:19630186/1‑35 (MQ=255)
                     ccGGTCAGTTTCACCAGCCAGTCAGCCAGCTgcgc               >  1:9754854/1‑35 (MQ=255)
                      cGGTCCGTTCCCCCAGCCAGTCAGCCAGCTGCGCa              <  1:4178623/35‑1 (MQ=25)
                       gttcattccccCCAGCCAGTCAGCCAGCTGCGCaa             >  1:10062150‑M1/12‑35 (MQ=255)
                       ggTCAGTTTCACCAGCCAGTCAGCCAGCTGCGCaa             >  1:18054847/1‑35 (MQ=255)
                       ggTCAGTTTCACCAGCCAGTCAGCCAGCTGCGCaa             >  1:14300917/1‑35 (MQ=255)
                        gTCAGTTTCACCAGCCAGTCAGCCAGCTGCGCAat            >  1:9043500/1‑35 (MQ=255)
                         tcatttcccCCAGCCAGTCAGCCAGCTGCGCAatc           >  1:658751‑M1/10‑35 (MQ=255)
                         tcattccccCCAGCCAGTCAGCCAGCTGCGCAatc           >  1:148617‑M1/10‑35 (MQ=255)
                         tCAGTTTCACCAGCCAGTCAGCCAGCTGCGCAatc           >  1:1776299/1‑35 (MQ=255)
                         ccatttcccCCAGCCAGTCAGCCAGCTGCGCAatc           >  1:13295448‑M1/10‑35 (MQ=255)
                          cattccccCCAGCCAGTCAGCCAGCTGCGCAatca          >  1:17389041‑M1/9‑35 (MQ=255)
                          cattccccCCAGCCAGTCAGCCAGCTGCGCAatca          >  1:9590642‑M1/9‑35 (MQ=255)
                          cAGTTTCACCAGCCAGTCAGCCAGCTGCGCAatca          >  1:4885742/1‑35 (MQ=255)
                          cAGTTTCACCAGCCAGTCAGCCAGCTGCGCAatca          >  1:5580943/1‑35 (MQ=255)
                          cAGTTTCACCAGCCAGTCAGCCAGCTGCGCAatca          >  1:5762132/1‑35 (MQ=255)
                           aGTTTCACCAGCCAGTCAGCCAGCTGCGCAatcat         >  1:6435450/1‑35 (MQ=255)
                           aGTTTCACCAGCCAGTCAGCCAGCTGCGCAatcat         >  1:10032492/1‑35 (MQ=255)
                           aGTTTCACCAGCCAGTCAGCCAGCTGCGCAatcat         >  1:19599895/1‑35 (MQ=255)
                           aGTTTCACCAGCCAGTCAGCCAGCTGCGCAatcat         >  1:10778518/1‑35 (MQ=255)
                            tttcccCCAGCCAGTCAGCCAGCTGCGCAatcatc        >  1:5939026‑M1/7‑35 (MQ=255)
                            gTTTCACCAGCCAGTCAGCCAGCTGCGCAatcatc        >  1:18574304/1‑35 (MQ=255)
                             tttCACCAGCCAGTCAGCCAGCTGCGCAATCATct       >  1:2121779/1‑35 (MQ=255)
                             ttcccCCAGCCAGTCAGCCAGCTGCGCAATCATct       >  1:15717118‑M1/6‑35 (MQ=255)
                             tccccCCAGCCAGTCAGCCAGCTGCGCAATCATct       >  1:14195366‑M1/6‑35 (MQ=255)
                              ttCACCAGCCAGTCAGCCAGCTGCGCAATCATctg      >  1:16286203/1‑35 (MQ=255)
                              ccccCCAGCCAGTCAGCCAGCTGCGCAATCATctg      >  1:6543773‑M1/5‑35 (MQ=255)
                               tCACCAGCCAGTCAGCCAGCTGCGCAATCATctgc     >  1:15757169/1‑35 (MQ=255)
                               cccCCAGCCAGTCAGCCAGCTGCGCAATCATctgc     >  1:2944552‑M1/4‑35 (MQ=255)
                                ccCCAGCCAGTCAGCCAGCTGCGCAATCATctgct    >  1:9879935‑M1/3‑35 (MQ=255)
                                ccCCAGCCAGTCAGCCAGCTGCGCAATCATctgct    >  1:1119316‑M1/3‑35 (MQ=255)
                                ccCCAGCCAGTCAGCCAGCTGCGCAATCATctgct    >  1:16159638‑M1/3‑35 (MQ=255)
                                ccCCAGCCAGTCAGCCAGCTGCGCAATCATctgct    >  1:18782744‑M1/3‑35 (MQ=255)
                                ccCCAGCCAGTCAGCCAGCTGCGCAATCATctgct    >  1:17601446‑M1/3‑35 (MQ=255)
                                cACCAGCCAGTCAGCCAGCTGCGCAATCATctgct    >  1:11568144/1‑35 (MQ=255)
                                cACCAGCCAGTCAGCCAGCTGCGCAATCATctgct    >  1:14555115/1‑35 (MQ=255)
                                 cCCAGCCAGTCAGCCAGGTGCGCAATCATctgctg   >  1:625915‑M1/2‑35 (MQ=255)
                                 cCCAGCCAGTCAGCCAGCTGCGCAATcatctgatg   >  1:11894175‑M1/2‑32 (MQ=255)
                                 cCCAGCCAGTCAGCCAGCTGCGCAATCATctgctg   >  1:308681‑M1/2‑35 (MQ=255)
                                 cCCAGCCAGTCAGCCAGCTGCGCAATCATctgctg   >  1:1317581‑M1/2‑35 (MQ=255)
                                 cCCAGCCAGTCAGCCAGCTGCGCAATCATctgctg   >  1:13926442‑M1/2‑35 (MQ=255)
                                 cCCAGCCAGTCAGCCAGCTGCGCAATCATctgctg   >  1:5463945‑M1/2‑35 (MQ=255)
                                 aCCAGCCAGTCAGCCAGCTGCGCAATCATctgctg   >  1:8244786/1‑35 (MQ=255)
                                 aCCAGCCAGTCAGCCAGCTGCGCAATCATctgctg   >  1:16247302/1‑35 (MQ=255)
                                  CCAGCCAGTCAGCCAGCTGCGCAATCATCTGCTGa  >  1:12092629‑M1/1‑35 (MQ=255)
                                  CCAGCCAGTCAGCCAGCTGCGCAATCATCTGCTGa  >  1:14779836‑M1/1‑35 (MQ=255)
                                  CCAGCCAGTCAGCCAGCTGCGCAATCATCTGCTGa  <  1:1816815‑M1/35‑1 (MQ=255)
                                  CCAGCCAGTCAGCCAGCTGCGCAATCATCTGCTGa  >  1:3594667‑M1/1‑35 (MQ=255)
                                  |                                  
TGCATACAAACGGCGTCGTAACCGGTCAGTTTCACCAGCCAGTCAGCCAGCTGCGCAATCATCTGCTGA  >  REL606/2933091‑2933159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.