New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1510513 = | 81 (0.790) | 16 (0.210) | 4/36 | NT | 22.7% | coding (256/681 nt) | narV | nitrate reductase 2 (NRZ), gamma subunit |
? | REL606 | 4138913 = | 48 (0.620) | coding (563/918 nt) | oxyR | DNA‑binding transcriptional dual regulator |
Only 100 of 161 total aligned reads displayed.
ATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTG > REL606/1510479‑1510546 | cagtgaccatcttccagcatcagcagtttttcccc > 1:18648749‑M1/35‑35 (MQ=255) cagtgaccatcttccagcatcagcagtttttcccc < 1:12228879‑M1/1‑1 (MQ=255) aTACCGCCGAGCACCATCGCCATGAGTTGTTTCGc > 1:15925639/1‑35 (MQ=255) aTACCGCCGAGCACCATCGCCATGAGTTGTTTCGc > 1:20331127/1‑35 (MQ=255) aTACCGCCGAGCACCATCGCCATGAGTTGTTTCGc > 1:8410426/1‑35 (MQ=255) tACCGCCGAGCACCATCGCCATGAGTTGTTTCGCt > 1:2288531/1‑35 (MQ=255) tACCGCCGAGCACCATCGCCATGAGTTGTTTCGCt > 1:11630416/1‑35 (MQ=255) ccccgcggAGCCCTTTCGCCATGAGTTGTTTCGCt < 1:13677817/33‑1 (MQ=16) ccccgccgAGCACCATCGCGATGAGTTGTTTCGCt < 1:203580/33‑1 (MQ=38) agtgaccatcttccagcatcagcagtttttcccCt > 1:4030228‑M1/34‑35 (MQ=255) agtgaccatcttccagcatcagcagtttttcccCt > 1:5554757‑M1/34‑35 (MQ=255) agtgaccatcttccagcatcagcagtttttcccCt > 1:5665835‑M1/34‑35 (MQ=255) agtgaccatcttccagcatcagcagtttttcccCt > 1:10045599‑M1/34‑35 (MQ=255) agtgaccatcttccagcatcagcaggttttcccCt < 1:19831934‑M1/2‑1 (MQ=255) agtcaccatcttccagcatcagcagtttttcccCt < 1:13699389‑M1/2‑1 (MQ=255) gtgaccatcttccagcatcagcagtttttcccCTg > 1:8678283‑M1/33‑35 (MQ=255) gtgaccatcttccagcatcagcagtttttcccCTg > 1:11399177‑M1/33‑35 (MQ=255) cccgccgAGCCCCATCGCCATGAGTTGTTTCGCTg < 1:14522675/34‑1 (MQ=255) aCCGCCGAGCACTATCGCCATGAGTTGTTTCGCTg > 1:11081029/1‑35 (MQ=255) aCCGCCGAGCACCATCGCCATGAGTTGTTTCGCTg > 1:12909110/1‑35 (MQ=255) tgaccatcttccagcatcagcagtttttcccCTGc < 1:12415044‑M1/4‑1 (MQ=255) ccgccgAGCACCATCGCCATGAGTTGTTTCGCTGc > 1:7637474/1‑35 (MQ=255) cccccgAGCCCCATCGCCATGAGTTGTTTCGCTGc < 1:2941280/32‑1 (MQ=38) gaccatcttccagcatcagcagtttttcccCTGcc < 1:15615304‑M1/5‑1 (MQ=255) gaccatcttccagcatcagcagtttttcccCTGcc < 1:6353235‑M1/5‑1 (MQ=255) gaccatcttccagcatcagcagtttttccaCTGcc > 1:14774237‑M1/31‑35 (MQ=255) cgccgACCCCCATCGCCATGAGTTGTTTCGCTGcc < 1:11540636/35‑1 (MQ=38) gccgAGCACCATCGCCATGAGTTGTTTCGCTGCCa > 1:11888880/1‑35 (MQ=255) gccgACCCCCTTCGCCATGAGTTGTTTCGCTGCCa < 1:896255/35‑1 (MQ=25) gccgACCACCTTCGCCATGAGTTGTTTCGCTGCCa < 1:15717577/35‑1 (MQ=38) ncgAGCACCATCGCCATGAGTTGTTTCGCTGCCAc > 1:9840074/2‑35 (MQ=255) ccgAGCACCATCGCCATGAGTTGTTTCGCTGCCAc > 1:18602638/1‑35 (MQ=255) cgAGCACCATCGCCATGAGTTGTTTCGCTGCCACt > 1:7611604/1‑35 (MQ=255) cgAGCACCATCGCCATGAGTTGTTTCGCTGCCACt > 1:17972099/1‑35 (MQ=255) gCACCATCGCCATGAGTTGTTTCGCTGCCACTGGc > 1:815162/1‑35 (MQ=255) aCCGTCGCCATGAGTTGTTTCGCTGCCACTGGCaa > 1:5362919/1‑35 (MQ=255) aCCATCGCCATGAGTTGTTTCGCTGCCACTGGCag > 1:7836127/1‑34 (MQ=255) aCCATCGCCATGAGTTGTTTCGCTGCCACTGGCaa > 1:886694/1‑35 (MQ=255) ccATCGCCATGAGTTGTTTCGCTGCCACTGGCaaa > 1:13470152/1‑35 (MQ=255) ccATCGCCATGAGTTGTTTCGCTGCCACTGGCaaa > 1:7445339/1‑35 (MQ=255) cATCGCCATGAGTTGTTTCGCTGCCACTGGCaaaa > 1:7308193/1‑35 (MQ=255) cATCGCCATGAGTTGTTTCGCTGCCACTGGCaaaa > 1:663784/1‑35 (MQ=255) cATCGCCATGAGTTGTTTCGCTGCCACTGGCaaaa > 1:10870085/1‑35 (MQ=255) aTCGCCATGAGTTGTTTCGCTGCCACTGGCaaaaa > 1:7327491/1‑35 (MQ=255) tCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAAc > 1:14779169/1‑35 (MQ=255) cGCCATGAGTTGTTTCGCTGCCACTGGCAAAAAcc > 1:5165157/1‑35 (MQ=255) cGCCATGAGTTGTTTCGCTGCCACTGGCAAAAAcc > 1:4333126/1‑35 (MQ=255) cGCCATGAGTTGTTTCGCTGCCACTGGCAAAAAcc > 1:17239590/1‑35 (MQ=255) gCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCa > 1:5314517/1‑35 (MQ=255) gCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCa > 1:15940356/1‑35 (MQ=255) gCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCa > 1:17454651/1‑35 (MQ=255) gCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCa > 1:7061149/1‑35 (MQ=255) ccATGATTTTTTCCCCTGCCACTGGCAAAAACCAc < 1:16660883/35‑1 (MQ=16) ccATGAGTTGTTTCGCTGCCACTGGCAAAAACCAc > 1:5929786/1‑35 (MQ=255) cATGAGTTGTTTCGCTGCCACTGGCAAAAACCAcg > 1:7730972/1‑35 (MQ=255) cATGAGTTGTTTCGCTGCCACTGGCAAAAACCAcg > 1:7545144/1‑35 (MQ=255) aaTGTGTTTTTCCCCTGCCACTGGCAAAAACCAcg < 1:11633774/34‑1 (MQ=16) aTGAGTTGTTTCGCTGCCACTGGCAAAAACCAcgc > 1:1724643/1‑35 (MQ=255) aTGAGTTGTTTCGCTGCCACTGGCAAAAACCAcgc > 1:2635265/1‑35 (MQ=255) aTGAGTTGTTTCGCTGACACTGGCAAAAACCAcgc < 1:2981770/35‑1 (MQ=255) gAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGt > 1:7471957/1‑35 (MQ=255) gAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGt > 1:842565/1‑35 (MQ=255) gttttttcccCTGCCACTGGCAAAAACCACGCGTa > 1:16273286‑M1/11‑35 (MQ=255) attttttcccCTGCCACTGGCAAAAACCACGCGTa > 1:19363183‑M1/11‑35 (MQ=255) aGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTa > 1:19387886/1‑35 (MQ=255) aGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTa > 1:11475573/1‑35 (MQ=255) aGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTa > 1:15596782/1‑35 (MQ=255) ttttttcccCTGCCACTGGCAAAAACCACGCGTAc > 1:18051292‑M1/10‑35 (MQ=255) tttgttcccCTGCCACTGGCAAAAACCACGCGTAc > 1:9065543‑M1/10‑35 (MQ=255) gtttttcccCTGCCACTGGCAAAAACCACGCGTAc > 1:3218785‑M1/10‑35 (MQ=255) gttgttTCGCTGCCACTGGCAAAAACCACGCGTAc > 1:20070818/1‑35 (MQ=255) gttgttTCGCTGCCACTGGCAAAAACCACGCGTAc > 1:19549013/1‑35 (MQ=255) gttgttTCGCTGCCACTGGCAAAAACCACGCGTAc > 1:6978175/1‑35 (MQ=255) gttgttTCGCTGCCACTGGCAAAAACCACGCGTAc > 1:15499303/1‑35 (MQ=255) gttgttTCGCTGCCACTGGCAAAAACCACGCGTAc > 1:12942948/1‑35 (MQ=255) tttttcccCTGCCACTGGCAAAAACCACGCGTACa > 1:15300945‑M1/9‑35 (MQ=255) tttttcccCTGCCACTGGCAAAAACCACGCGTACa > 1:4055017‑M1/9‑35 (MQ=255) ttgttcccCTGCCACTGGCAAAAACCACGCGTACa > 1:6488679‑M1/9‑35 (MQ=255) ttgttTCGCTGCCACTGGCAAAAACCACGCGTACa > 1:3059847/1‑35 (MQ=255) ttttcccCTGCCACTGGCAAAAACCACGCGTACAt > 1:5168016‑M1/8‑35 (MQ=255) tttccccCTGCCACTGGCAAAAACCACGCGTACAt > 1:15076180‑M1/8‑35 (MQ=255) tgttcccCTGCCACTGGCAAAAACCACGCGTACAt > 1:4848659‑M1/8‑35 (MQ=255) gttTCGCTGCTACTGGCAAAAACCACGCGTACATc > 1:15785061/1‑35 (MQ=255) gttTCGCTGCCACTGGCAAAAACCACGCGTACATc > 1:12004306/1‑35 (MQ=255) tttccCTGCCACTGGCAAAAACCACGCGTACATcc > 1:155723‑M1/6‑35 (MQ=255) ttcccCTGCCACTGGCAAAAACCACGCGTACATcc > 1:17728732‑M1/6‑35 (MQ=255) ttCGCTGCCACTGGCAAAAACCACGCGTACATCCa > 1:17756804/1‑35 (MQ=255) ttCGCTGCCACTGGCAAAAACCACGCGTACATCCa > 1:2149965/1‑35 (MQ=255) ttCGCTGCCACTGGCAAAAACCACGCGTACATCCa > 1:16236812/1‑35 (MQ=255) ttCGCTGCCACTGGCAAAAACCACGCGTACATCCa > 1:3058793/1‑35 (MQ=255) tcccCTGCCACTGGCAAAAACCACGCGTACATCCa > 1:13793872‑M1/5‑35 (MQ=255) tcccCTGCCACTGGCAAAAACCACGCGTACATCCa > 1:9157695‑M1/5‑35 (MQ=255) ccccCTGCCACTGGCAAAAACCACGCGTACATCCa > 1:18372490‑M1/5‑35 (MQ=255) tCGCTGCCACTGGCAAAAACCACGCGTACATCCAg > 1:12277029/1‑35 (MQ=255) cccCTGCCACTGGCAAAAACCACGCGTACATCCAg > 1:14286753‑M1/4‑35 (MQ=255) cccCTGCCACTGGCAAAAACCACGCGTACATCCAg > 1:14217289‑M1/4‑35 (MQ=255) cccCTGCCACTGGCAAAAACCACGCGTACATCCAg > 1:6992413‑M1/4‑35 (MQ=255) cGCTGCCACTGGCAAAAACCACGCGTACATCCAGt > 1:10361461/1‑35 (MQ=255) gCTGCCACTGGCAAAAACCACGCGTACATCCAGtt > 1:2446263/1‑34 (MQ=255) gCTGCCACTGGCAAAAACCACGCGTACATCCAGTg > 1:4376535/1‑35 (MQ=255) | ATACCGCCGAGCACCATCGCCATGAGTTGTTTCGCTGCCACTGGCAAAAACCACGCGTACATCCAGTG > REL606/1510479‑1510546 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |