New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 610886 =57 (0.550)19 (0.260) 4/34 NT 28.5% coding (485/858 nt) entB isochorismatase
?REL606 1306336 = 55 (0.760)intergenic (‑97/+274) cls/kch cardiolipin synthetase/voltage‑gated potassium channel

Only 100 of 150 total aligned reads displayed.

GTATATGCCCACATTGGTTGTATGACCACCGCAACCGACGCATTTATGCGCGATATTAAACCGTTTATG  >  REL606/610852‑610920
                                  |                                  
gTATATGCCCACATTGGTTGGATGACCACCGCCAc                                    >  1:17156221/1‑35 (MQ=37)
atgcaataacagaatggtcattatacccccgcccc                                    >  1:9402648‑M1/35‑35 (MQ=255)
atgcaataacagaatggtcattatacccccgcccc                                    >  1:6451332‑M1/35‑35 (MQ=255)
 tgcaataacagaatggtcattatacccccgccccc                                   >  1:15739156‑M1/34‑35 (MQ=255)
 tgcaataacagaatggtcattatacccccgccccc                                   <  1:51545‑M1/2‑1 (MQ=255)
 tgcaataacagaatggtcattatacccccgccccc                                   <  1:8807097‑M1/2‑1 (MQ=255)
 tataTGCCCACATTGGTTGTATGACCACCGCAAcc                                   >  1:18895658/1‑35 (MQ=255)
 tataTGCCCACATTGGTTGTATGACCACCGCAAcc                                   >  1:9144224/1‑35 (MQ=255)
 ggcaataacagaatggtcattatacccccgccccc                                   >  1:20087150‑M1/34‑35 (MQ=255)
  gcaataacagaatggtcattatacccccgcccccg                                  <  1:17283776‑M1/3‑1 (MQ=255)
  gcaataacagaatggtcattatacccccgcccccg                                  <  1:13019764‑M1/3‑1 (MQ=255)
  gcaataacagaatggtcattatacccccgcccccg                                  <  1:12757251‑M1/3‑1 (MQ=255)
  atatGCCCACATTGGTTGTATGACCACCGCAACCg                                  >  1:16434145/1‑35 (MQ=255)
  atatGCCCACATTGGTTGGATGGCCACCGCAACCg                                  >  1:3896253/1‑35 (MQ=38)
   tatGCCCACATTGGTTGTATGACCACCGCAACCGa                                 >  1:17414437/1‑35 (MQ=255)
   tatGCCCACATTGGTTGGATGACCACCGCAACCGa                                 >  1:6070424/1‑35 (MQ=255)
   caataacagaatggtcattatacccccgcccCCGa                                 <  1:8047265‑M1/4‑1 (MQ=255)
   caataacagaatggtcattatacccccgcccCCGa                                 <  1:6028338‑M1/4‑1 (MQ=255)
   caataacagaatggtcattatacccccgcccCCGa                                 <  1:6182135‑M1/4‑1 (MQ=255)
   caataacagaatggtcattatacccacgcccCCGa                                 >  1:9292607‑M1/32‑35 (MQ=255)
    atGCCCACATTGGTTGGATGACCACCGCAACCggc                                >  1:899365/1‑33 (MQ=38)
    aataacagaattgtcattatacccccgcccCCGAc                                <  1:2386677‑M1/5‑1 (MQ=255)
    aataacagaatggtcattatacccccgcccCCGAc                                <  1:13111540‑M1/5‑1 (MQ=255)
    aataacagaatggtcattatacccccgcccCCGAc                                <  1:8926571‑M1/5‑1 (MQ=255)
    aataacagaatggtcattatacccccgcccCCGAc                                <  1:6816632‑M1/5‑1 (MQ=255)
     ataacagaatggtcattatccccccgcccCCGACg                               >  1:8628107‑M1/30‑35 (MQ=255)
      taacagaatggtcattatacccccgcccCCGACGc                              <  1:11441430‑M1/7‑1 (MQ=255)
      taacagaatggtcattatacccccgcccCCGACGc                              <  1:18655143‑M1/7‑1 (MQ=255)
      taacagaatggtcattatacccccgcccCCGACGc                              >  1:13582595‑M1/29‑35 (MQ=255)
      taacagaatggtcattatacccccgcccCCGACGc                              <  1:13663117‑M1/7‑1 (MQ=255)
       cccACATTGGTTGGATGACCACCGCAACCGACGCa                             >  1:3217454/1‑35 (MQ=255)
        ccACATTGGTTGTATGACCACCGCAACCGACGcct                            >  1:6928899/1‑33 (MQ=255)
        ccACATTGGTTGTATGACCACCGCAACCGACGCac                            >  1:96082/1‑34 (MQ=255)
             ttGGTTGTATGACCACCGCAACCGACGCATTTATg                       >  1:4792629/1‑35 (MQ=255)
             ttGGTTGTATGACCACCGCAACCGACGCATTTATg                       >  1:5566011/1‑35 (MQ=255)
             ttGGTTGTATGACCACCGCAACCGACGCATTTATg                       >  1:19453471/1‑35 (MQ=255)
              tGGTTGTATGACCACCGCAACCGACGCATTTATgc                      >  1:13535437/1‑35 (MQ=255)
              tGGTTGTATGACCACCGCAACCGACGCATTTATgc                      >  1:16660967/1‑35 (MQ=255)
                gTTGTATGACCACCGCAACCGACGCATTTATgcgc                    >  1:20341560/1‑35 (MQ=255)
                 ttGTATGACCACCGCAACCGACGCATTTATGcgcg                   >  1:4120182/1‑35 (MQ=255)
                 ttGTATGACCACCGCAACCGACGCATTTATGcgcg                   >  1:3184202/1‑35 (MQ=255)
                 ttGTATGACCACCGCAACCGACGCATTTATGcgcg                   >  1:4942459/1‑35 (MQ=255)
                  tGTATGACCACCGCAACCGACGCATTTATGCGCGa                  >  1:16346666/1‑35 (MQ=255)
                  tGTATGACCACCGCAACCGACGCATTTATGCGCGa                  >  1:16893722/1‑35 (MQ=255)
                   gTATGACCACCGCAACCGACGCATTTATGCGCTat                 >  1:11003967/1‑35 (MQ=255)
                   gTATGACCACCGCAACCGACGCATTTATGCGCGat                 >  1:15430886/1‑35 (MQ=255)
                   gTATGACCACCGCAACCGACGCATTTATGCGCGat                 >  1:10353416/1‑35 (MQ=255)
                   gTATGACCACCGCAACCGACGCATTTATGCGCGat                 >  1:11371609/1‑35 (MQ=255)
                   gTATGACCACCGCAACCGACGCATTTATGCGCGat                 >  1:1129587/1‑35 (MQ=255)
                   gTATGACCACCGCAACCGACGCATTTATGCGCGat                 >  1:10513194/1‑35 (MQ=255)
                    tATGACCACCGCAACCGACGCATTTATGCGCGata                >  1:10626386/1‑35 (MQ=255)
                    tATGACCACCGCAACCGACGCATTTATGCGCGata                >  1:2110247/1‑35 (MQ=255)
                    tATGACCACCGCAACCGACGCATTTATGCGCGata                >  1:784987/1‑35 (MQ=255)
                    tATGACCACCGCAACCGACGCATTTATGCGCGata                >  1:5985169/1‑35 (MQ=255)
                     aTGACCACCGCAACCGACGCATTTATGCGCGatat               >  1:1537510/1‑35 (MQ=255)
                      tGACCACCGCAACCGACGCATTTATGCGCGATAtt              >  1:13095896/1‑35 (MQ=255)
                      tGACCACCGCAACCGACGCATTTATGCGCGATAtt              >  1:12823049/1‑35 (MQ=255)
                       gACCACCGCAACCGACGCATTTATGCGCGATATTa             >  1:4948278/1‑35 (MQ=255)
                        ccccccccccCCGACGCATTTATGCGCGATATTaa            >  1:8087375‑M1/11‑35 (MQ=255)
                        accaccGCAACCGACGCATTTATGCGCGATATTaa            >  1:17160682/1‑35 (MQ=255)
                         cccccccccCCGACGCATTTATGCGCGATATTaaa           >  1:10998283‑M1/10‑35 (MQ=255)
                         cccccccccCCGACGCATTTATGCGCGATATTaaa           >  1:2256202‑M1/10‑35 (MQ=255)
                         cccccccccCCGACGCATTTATGCGCGATATTaaa           >  1:12067980‑M1/10‑35 (MQ=255)
                         cccccccccCCGACGCATTTATGCGCGATATTaaa           >  1:1225908‑M1/10‑35 (MQ=255)
                         cccccccccCCGACGCATTTATGCGCGATATTaaa           >  1:12267700‑M1/10‑35 (MQ=255)
                          ccccccccCCGACGCATTTATGCGCGATATTAAAc          >  1:10177065‑M1/9‑35 (MQ=255)
                          caccGCAACCGACGCATTTATGCGCGATATTAAAc          >  1:5718359/1‑35 (MQ=255)
                           cccgcccCCGACGCATTTATGCGCGATATTAAAcc         >  1:5368361‑M1/8‑35 (MQ=255)
                           cccccccCCGACGCATTTATGCGCGATATTAAAcc         >  1:18222684‑M1/8‑35 (MQ=255)
                           cccccccCCGACGCATTTATGCGCGATATTAAAcc         >  1:14125139‑M1/8‑35 (MQ=255)
                           cccccccCCGACGCATTTATGCGCGATATTAAAcc         >  1:5156231‑M1/8‑35 (MQ=255)
                           accGCAACCGACGCATTTATGCGCGATATTAAAcc         >  1:13042694/1‑35 (MQ=255)
                           accGCAACCGACGCATTTATGCGCGATATTAAAcc         >  1:2437003/1‑35 (MQ=255)
                            cgccccCCGACGCATTTATGCGCGATATTAAACCg        >  1:1592207‑M1/7‑35 (MQ=255)
                            ccccccCCGACGCATTTATGCGCGATATTAAACCg        >  1:564741‑M1/7‑35 (MQ=255)
                            ccccccCCGACGCATTTATGCGCGATATTAAACCg        >  1:12070471‑M1/7‑35 (MQ=255)
                            ccGCAACCGACGCATTTATGCGCGATATTAAACCg        >  1:17832128/1‑35 (MQ=255)
                            ccGCAACCGACGCATTTATGCGCGATATTAAACCg        >  1:18212111/1‑35 (MQ=255)
                             ngCAACCGACGCATTTATGCGCGATATTAAACCGt       >  1:5964996/2‑35 (MQ=255)
                             cccccCCGACGCATTTATGCGCGATATTAAACCGt       >  1:2395777‑M1/6‑35 (MQ=255)
                             cGCAACCGACGCATTTATGCGCGATATTAAACCGt       >  1:3460400/1‑35 (MQ=255)
                             cGCAACCGACGCATTTATGCGCGATATTAAACCGt       >  1:7344879/1‑35 (MQ=255)
                              ccccCCGACGCATTTATGCGCGATATTAAACCGtt      >  1:3342856‑M1/5‑35 (MQ=255)
                              ccccCCGACGCATTTATGCGCGATATTAAACCGtt      >  1:5961157‑M1/5‑35 (MQ=255)
                              ccccCCGACGCATTTATGCGCGATATTAAACCGtt      >  1:14816966‑M1/5‑35 (MQ=255)
                               cccCCGACGCATTTATGCGCGATATTAAACCGttt     >  1:16916912‑M1/4‑35 (MQ=255)
                               cccCCGACGCATTTATGCGCGATATTAAACCGttt     >  1:14924612‑M1/4‑35 (MQ=255)
                               cAACCGACGCATTTATGCGCGATATTAAACCGttt     >  1:6694208/1‑35 (MQ=255)
                               cAACCGACGCATTTATGCGCGATATTAAACCGttt     >  1:20205086/1‑35 (MQ=255)
                               cAACCGACGCATTTATGCGCGATATTAAACCGttt     >  1:1589413/1‑35 (MQ=255)
                                cgCCGACGCATTTATGCGCGATATTAAACCGTTTa    >  1:15723336‑M1/3‑35 (MQ=255)
                                ccCCGACGCATTTATGCGCGATATTAAACCGTTTa    >  1:4026768‑M1/3‑35 (MQ=255)
                                acCCGACGAATTTATGCGCGATATTAAACCGTTTa    >  1:16622759‑M1/3‑35 (MQ=255)
                                aaCCGACGCATTTATGCGCGATATTAAACCGTTTa    >  1:20001882/1‑35 (MQ=255)
                                aaCCGACGCATTTATGCGCGATATTAAACCGTTTa    >  1:2429411/1‑35 (MQ=255)
                                 aCCGACGCATTTATGCGCGATATTAAACCGTTTAt   >  1:9313862/1‑35 (MQ=255)
                                  CCGACGCATTTATGCGCGATATTAAACCGTTTAtg  <  1:8947597‑M1/35‑1 (MQ=255)
                                  CCGACGCATTTATGCGCGATATTAAACCGTTTAtg  <  1:19614876‑M1/35‑1 (MQ=255)
                                  CCGACGCATTTATGCGCGATATTAAACCGTTTAtg  >  1:11457015‑M1/1‑35 (MQ=255)
                                  CCGACGCATTTATGCGCGATATTAAACCATTTAtg  <  1:17920626‑M1/35‑1 (MQ=255)
                                  |                                  
GTATATGCCCACATTGGTTGTATGACCACCGCAACCGACGCATTTATGCGCGATATTAAACCGTTTATG  >  REL606/610852‑610920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.