New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 456653 = | 60 (0.580) | 11 (0.140) | 4/36 | NT | 17.7% | coding (1034/1194 nt) | acrA | multidrug efflux system |
? | REL606 | 3845122 = | 57 (0.740) | coding (269/360 nt) | rnpA | ribonuclease P |
Only 100 of 131 total aligned reads displayed.
GAACTCCCGGCTATGGATTTCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGACCTCGATAACCGTGCTCTC > REL606/3845088‑3845156 | gAACTCCCGGCTATGGATTTCGTGGT‑GGTGGCGaa < 1:14644127/35‑1 (MQ=255) gAACTCCCGGCTATGGATTTCGTGGT‑GGTGGCGaa < 1:14608646/35‑1 (MQ=255) gAACTCCCGGCTATGGATTTCGTGGT‑GGTGGCGaa < 1:12842796/35‑1 (MQ=255) gAACTCCCGGCTATGGATTTCGTGGT‑GGTGGCGaa < 1:19384056/35‑1 (MQ=255) cccgtccgatcgttgcaagccaggctattggggaa > 1:4517363‑M2/35‑35 (MQ=255) cccgtccgatcgttgcaagccaggctattggggaa > 1:11506053‑M2/35‑35 (MQ=255) aaCTCCCGGCTATGGATTTCGTGGT‑GGTGGCGaaa < 1:15003845/35‑1 (MQ=255) aaCTCCCGGCTATGGATTTCGTGGT‑GGTGGCGaaa < 1:17687942/35‑1 (MQ=255) aaCTCACGGCTATGGATTTCGTGGT‑GGTGGAGaaa < 1:16153009/35‑1 (MQ=25) cTCCCGGCTATGGATTTCGTGGT‑GGTGGCGaaaaa < 1:985033/35‑1 (MQ=255) tCCCGGCTATGGATTTCGTGGT‑GGTGGCGaaaaaa < 1:13004228/35‑1 (MQ=255) tCCCGGCTATGGATTTCGTGGT‑GGTGGCGaaaaaa < 1:17924114/35‑1 (MQ=255) gtccgatcgttgcaagccaggctattggggaaaaa > 1:1425021‑M2/32‑35 (MQ=255) gtccgatcgttgcaagccaggctattggcgaaaaa > 1:573503‑M2/32‑35 (MQ=255) tccgatcgttgcaagccaggctattggggaaaaag > 1:10555442‑M2/31‑34 (MQ=255) tccgatcgttgcaagccaggctattggggaaaaaa > 1:16859102‑M2/31‑35 (MQ=255) tccgatcgttgcaagccaggctattggcgaaaaga > 1:17390382‑M2/31‑33 (MQ=255) cccTGCTATGGATTTCGTGGT‑GGGGGGGgaaaaaa > 1:18579646/1‑34 (MQ=16) ccgatcgttgcaagccaggctattggcggAAAAAg > 1:15457069‑M2/30‑35 (MQ=255) ccGGCTATGGATTTCGTGGT‑GGTGGCGAAAAAAgg < 1:19830622/35‑1 (MQ=255) ccGGCTATGGATTTCGTGGT‑GGTGGCGAAAAAAgg < 1:19634206/35‑1 (MQ=255) ccGGCTATGGATTTAGTGGT‑GGTGGCGAAAAAAgg < 1:16806035/35‑1 (MQ=255) cgatcgttgcaagccaggctattggcgaAAAAAgg > 1:14630597‑M2/29‑35 (MQ=255) cgatcgttgcaagccaggctattggcgaAAAAAgg > 1:9632917‑M2/29‑35 (MQ=255) cgatcgttgcaagccaggctattggcgaAAAAAgg > 1:18480873‑M2/29‑35 (MQ=255) ggCTATGGATTTCGTGGT‑GGTGGCGAAAAAAgggg < 1:18499087/35‑1 (MQ=255) ggCTATGGATTTCGTGGT‑GGTGGCGAAAAAAgggg < 1:2452710/35‑1 (MQ=255) ggCTATGGATTTCGTGGG‑GGGGGGGGGAAAAaggg > 1:17825295/1‑35 (MQ=9) gatcgttgcaagccaggctattggcgaAAAAAggg > 1:8251926‑M2/28‑35 (MQ=255) gCTATGGATTTCGTGGTGGGGGGGGGAAAAAgggg > 1:4415897/1‑35 (MQ=12) gCTATGGATTTCGTGGT‑GGTGGCGAAAAAAGGGGt < 1:8333239/35‑1 (MQ=255) atcgtttcaagccaggctattggcgaAAAAagggt > 1:8543281‑M2/27‑34 (MQ=255) atcgttgcaagccaggctattggcggAAAAAgggg > 1:1002709‑M2/27‑35 (MQ=255) cTATGGATTTCGTGGTGGGGGGGGAAAAAAGGGGt > 1:1923491/1‑35 (MQ=19) cTATGGATTTCGTGGT‑GGTGGCGAAAAAAGGGGtt < 1:11100792/35‑1 (MQ=255) tATGGATTTCGTGGTGGGGGGGGAAAAAAgggggg > 1:11572480/1‑33 (MQ=16) tATGGATTTCGTGGTGGGGGGGGAAAAAAGGGGtg > 1:9926023/1‑34 (MQ=16) tATGGATTTCGTGGT‑GGTGGCGAAAAAAGGGGTTg < 1:9393496/35‑1 (MQ=255) tATGGATTTCGTGGT‑GGTGGCGAAAAAAGGGGTTg < 1:16534763/35‑1 (MQ=255) cgttgcaagccaggctattggcgaAAAaagggggg > 1:4000148‑M2/25‑33 (MQ=255) aTGGATTTCGTGGTGGGGGGGGAAAAAAggggcgg > 1:20344807/1‑32 (MQ=12) aTGGATTTCGTGGTGGGGGGGGAAAAAAGGGGtgg > 1:9918356/1‑33 (MQ=16) aTGGATTTCGTGGTGGGGGGGGAAAAAAGGGGtgc > 1:727208/1‑33 (MQ=16) tGGATTTCGTGGT‑GGTGGCGAAAAAAGGGGTTGcc < 1:394862/35‑1 (MQ=255) ggATTTCGTGGTGGGGGGGGGAAAAAGGGGTGGcg > 1:7167220/1‑34 (MQ=2) ggATTTCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCg < 1:12017882/35‑1 (MQ=255) ggATTTCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCg < 1:18205740/35‑1 (MQ=255) ggATTTCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCg < 1:2095603/35‑1 (MQ=255) ggATTTCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCg < 1:5186691/35‑1 (MQ=255) ggATTTCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCg < 1:6089357/35‑1 (MQ=255) ggATTTCGTGGT‑GGGGGGGGGAAAAGGGGGTGGCg > 1:19263112/1‑35 (MQ=9) gATTTCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGa < 1:637585/35‑1 (MQ=255) gATTTCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGa < 1:11543461/35‑1 (MQ=255) aTTTCGTGGTGGGGGGGGAAAAAAGGGGTGGcggc > 1:12454078/1‑32 (MQ=9) tttCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGAcc < 1:11056110/35‑1 (MQ=255) ttCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGACCt < 1:3251353/35‑1 (MQ=255) ttCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGACCt < 1:10894210/35‑1 (MQ=255) ttCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGACCt < 1:12107691/35‑1 (MQ=255) tCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGACCTc < 1:14681889/35‑1 (MQ=255) tCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGACCTc < 1:15340529/35‑1 (MQ=255) tCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGACCTc < 1:15545067/35‑1 (MQ=255) tCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGACCTc < 1:16116150/35‑1 (MQ=255) cGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGACCTCg < 1:8531677/35‑1 (MQ=255) cGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGACCTCg < 1:8402301/35‑1 (MQ=255) cGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGACCTCg < 1:5471219/35‑1 (MQ=255) cGTGGT‑GGGGGGGGAAAAAAGGGGTGCCGGCCTcc > 1:17563641/1‑34 (MQ=255) gtggt‑ggtgGCGAAAAAAGGGGTTGCCGACCTCGa < 1:14266074/35‑1 (MQ=255) gtggt‑ggtgGCGAAAAAAGGGGTTGCCGACCTCGa < 1:4565721/35‑1 (MQ=255) gtggt‑ggtgGCGAAAAAAGGGGTTGCCGACCTCGa < 1:19269181/35‑1 (MQ=255) tggt‑ggtggCGAAAAAAGGGGTTGCCGACCTCGAt < 1:8703337/35‑1 (MQ=255) ggt‑ggtggCGAAAAAAGGGGTTGCCGCCCTCGATa < 1:11260382/35‑1 (MQ=255) ggt‑ggtggCGAAAAAAGGGGTTGCCGACCTCGATa < 1:14159645/35‑1 (MQ=255) ggt‑ggtggCGAAAAAAGGGGTTGCCGAACTCCATa > 1:328786/1‑35 (MQ=37) gt‑ggtggCGAAAAAAGGGGTTGCCGCCCTCGATaa > 1:3603685/1‑35 (MQ=255) gt‑ggtggCGAAAAAAGGGGTTGCCGACCTCGATaa < 1:14964593/35‑1 (MQ=255) t‑ggtggCGAAAAAAGGGGTTGCCGACCTCGATAAc > 1:16131334/1‑35 (MQ=255) t‑ggtggCGAAAAAAGGGGTTGCCGACCTCGATAAc < 1:2238207/35‑1 (MQ=255) ggtggCGAAAAAAGGGGTTGCCGACCTCGATAAcc > 1:13963073/1‑35 (MQ=255) ggtggCGAAAAAAGGGGTTGCCGACCTCGATAAcc > 1:10969429/1‑35 (MQ=255) ggtggCGAAAAAAGGGGTTGCCGACCTCGATAAcc > 1:10990293/1‑35 (MQ=255) ggtggCGAAAAAAGGGGTTGCCGACCTCGATAAcc > 1:13649464/1‑35 (MQ=255) gtggCGAAAAAAGGGGTTGCCGACCTCGATAACCg < 1:9697943/35‑1 (MQ=255) gtggCGAAAAAAGGGGTTGCCGACCTCGATAACCg > 1:12801995/1‑35 (MQ=255) gtggCGAAAAAAGGGGTTGCCGACCTCGATAACCg > 1:16460235/1‑35 (MQ=255) gtggCGAAAAAAGGGGTTGCCGACCTCGATAACCg > 1:11004393/1‑35 (MQ=255) gtggCGAAAAAAGGGGTTGCCGACCTCGATAACCg > 1:15878177/1‑35 (MQ=255) gtggCGAAAAAAGGGGTTGCCGACCCCGATAACCg > 1:4213342/1‑35 (MQ=255) tggcgaAAAAAGGGGTTGCCGACCTCGATAACCGt > 1:6811869‑M2/7‑35 (MQ=255) ggcgaAAAAAGGGGTTGCCGCCCTCGATAACCGTg < 1:7465864‑M2/30‑1 (MQ=255) ggcgaAAAAAGGGGTTGCCGACCTCGATAACCGTg > 1:5555636‑M2/6‑35 (MQ=255) gcgaAAAAAGGGGTTGCCGACCTCGATAACCGTGc > 1:8066372‑M2/5‑35 (MQ=255) gcgaAAAAAGGGGTTGCCGAACTCGATAACCGTGc > 1:13627546‑M2/5‑35 (MQ=255) cgaAAAAAGGGGTTGCCGCCCTCGATAACCGTGct < 1:3385861‑M2/32‑1 (MQ=255) cgaAAAAAGGGGTTGCCGACCTCGATAACCGTGct > 1:10201307‑M2/4‑35 (MQ=255) gaAAAAAGGGGTTGCCGACCTCGATAACCGTGctc > 1:7533916‑M2/3‑35 (MQ=255) gaAAAAAGGGGTTGCCGACCTCGATAACCGTGctc > 1:13444289‑M2/3‑35 (MQ=255) aAAAAAGGGGTTGCCGACCTCGATAACCGTGctct > 1:13678828‑M2/2‑35 (MQ=255) aaaagGGGGTTGCCGCCCTCGATAACCGTGctctc < 1:14306569/35‑1 (MQ=37) aaaaaGGGGTTGCCGACCTCGATAACCGTGctctc < 1:9298667/35‑1 (MQ=255) aaaaaGGGGTTGCCGACCTCGATAACCGTGctctc < 1:14596217/35‑1 (MQ=255) | GAACTCCCGGCTATGGATTTCGTGGT‑GGTGGCGAAAAAAGGGGTTGCCGACCTCGATAACCGTGCTCTC > REL606/3845088‑3845156 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |