New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3320231NA (NA)11 (0.180) 3/28 NT 25.5% intergenic (‑312/+118) tldD/yhdP predicted peptidase/conserved membrane protein, predicted transporter
?REL606 = 3686161 55 (0.540)coding (401/741 nt) yiaT hypothetical protein

Only 100 of 170 total aligned reads displayed.

TGTAGGCCTGATAAGACGCACAGCGTCGCATCAGgcaacggctg‑‑‑‑‑‑‑‑‑  >  REL606/3320198‑3320231
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAACGGCTGGGTGGGGGA  <  REL606/3686161‑3686143
                                                     
TGTAGGCCTGATAAGACGCACAGCGTCGCATCCGG                    >  1:6032500/1‑35
TGTAGGCCTGATAAGACGCACAGCGTCGCATCAGG                    <  1:1771387/35‑1
TGTAGGCCTGATAAGACGCACAGCGTCGCATCAGG                    <  1:17376782/35‑1
TGTAGGCCTGATAAGACGCACAGCGTCGCATCAGG                    <  1:3082514/35‑1
TGTAGGCCTGATAAGACGCACAGCGTCGCATCAGG                    <  1:1642744/35‑1
TGTAGGCCTGATAAGACGCACAGCGTCGCATCAGG                    >  1:7206285/1‑35
TGTAGGCCTGATAAGACGCACAGCGTCGCATCAGG                    >  1:5246567/1‑35
TGTAGGCCTGATAAGACGCACAGCGTCGCATCAGG                    >  1:6452026/1‑35
 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC                   <  1:16015721/35‑1
 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC                   <  1:18942187/35‑1
 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC                   <  1:445966/35‑1
 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC                   <  1:16552305/35‑1
 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC                   >  1:8449930/1‑35
 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC                   >  1:7991261/1‑35
 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC                   <  1:10893835/35‑1
 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC                   >  1:11421543/1‑35
 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC                   <  1:11568098/35‑1
 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC                   <  1:7177197/35‑1
 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC                   <  1:18607350/35‑1
  TAGGCCTGATAAGACGCACAGCGTCGCATCAGGta                  >  1:18097836/1‑33
  TAGGCCTGATAAGACGCACAGCGTCGCATCAGGCA                  >  1:5954268/1‑35
  TAGGCCTGATAAGACGCACAGCGTCGCATCAGGCA                  <  1:1302286/35‑1
  TAGGCCTGATAAGACGCACAGCGTCGCATCAGGCA                  <  1:16749177/35‑1
  TAGGCCTGATAAGACGCACAGCGTCGCATCAGGCA                  >  1:12072682/1‑35
  TAGGCCTGATAAGACGCACAGCGTCGCATCAGGCA                  >  1:16145981/1‑35
  TAGGCCTGATAAGACGCACAGCGTCGCATCAGGCA                  <  1:1990223/35‑1
  TAGGCCTGATAAGACGCACAGCGTCGCATCAGGCA                  >  1:15243228/1‑35
  TAGGCCTGATAAGACGCACAGCGTCGCATCAGGCA                  <  1:19523867/35‑1
   AGGCCTGATAAGACGCACAGCGTCGCATCAGGCAA                 >  1:16498386/1‑35
   AGGCCTGATAAGACGCACAGCGTCGCATCAGGCAA                 >  1:17556986/1‑35
   AGGCCTGATAAGACGCACAGCGTCGCATCAGGCAA                 >  1:15596314/1‑35
   AGGCCTGATAAGACGCACAGCGTCGCATCAGGCAA                 >  1:20426807/1‑35
   AGGCCTGATAAGACGCACAGCGTCGCATCAGGCAA                 >  1:4318302/1‑35
   AGGCCTGATAAGACGCACAGCGTCGCATCAGGCAA                 <  1:12385885/35‑1
   AGGCCTGATAAGACGCACAGCGTCGCATCAGGCAA                 >  1:757436/1‑35
   AGGCCTGATAAGACGCACAGCGCCGCATCAGGCAA                 >  1:520958/1‑35
    GGCCTGATAAGACGCACAGCGTCGCATCAGGCAAC                <  1:20064303/35‑1
    GGCCTGATAAGACGCACAGCGTCGCATCAGGCAAC                >  1:1190389/1‑35
    GGCCTGATAAGACGCACAGCGTCGCATCAGGCAAC                <  1:6545229/35‑1
    GGCCTGATAAGACGCACAGCGTCGCATCAGGCAAC                >  1:9542352/1‑35
    GGCCTGATAAGACGCACAGCGTCGCATCAGGCAAC                <  1:9655268/35‑1
     GCCTGATAAGACGCACAGCGTCGCATCAGGCAACG               <  1:19054649/35‑1
     GCCTGATAAGACGCACAGCGTCGCATCAGGCAACG               >  1:18941492/1‑35
     GCCTGATAAGACGCACAGCGTCGCATCAGGCAACG               <  1:18125558/35‑1
     GCCTGATAAGACGCACAGCGTCGCATCAGGCAACG               <  1:8183295/35‑1
     GCCTGATAAGACGCACAGCGTCGCATCAGGCAACG               >  1:10250004/1‑35
     GCCTGATAAGACGCACAGCGTCGCATCAGGCAACG               <  1:10371449/35‑1
     GCCTGATAAGACGCACAGCGTCGCATCAGGCAACG               <  1:11786310/35‑1
     GCCTGATAAGACGCACAGCGTCGCATCAGGCAACG               >  1:12102419/1‑35
     GCCTGATAAGACGCACAGCGTCGCATAAGGCAACG               <  1:2807421/35‑1
      CCTGATAAGACGCACAGCGTCGCATCAGGCAACGG              >  1:8683709/1‑35
      CCTGATAAGACGCACAGCGTCGCATCAGGCAACGG              >  1:16904657/1‑35
      CCTGATAAGACGCACAGCGTCGCATCAGGCAACGG              >  1:670125/1‑35
      CCTGATAAGACGCACAGCGTCGCATCAGGCAACGG              <  1:12533080/35‑1
      CCTGATAAGACGCACAGCGTCGCATCAGGCAACGG              >  1:13759564/1‑35
      CCTGATAAGACGCACAGCGTCGCATCAGGCAACGG              >  1:15893296/1‑35
      CCTGATAAGACGCACAGCGTCGCATCAGGCAACGG              >  1:2811677/1‑35
      CCTGATAAGACGCACAGCGTCGCATCAGGCAACGG              >  1:2268191/1‑35
       CTGATAAGACGCACAGCGTCGCATCAGTCAACGGC             >  1:18050283/1‑35
       CTGATAAGACGCACAGCGTCGCATCAGGCAACGag             >  1:18342776/1‑33
       CTGATAAGACGCACAGCGTCGCATCAGGCAACGGC             >  1:1474834/1‑35
       CTGATAAGACGCACAGCGTCGCATCAGGCAACGGC             >  1:7417743/1‑35
       CTGATAAGACGCACAGCGTCGCATCAGGCAACGGC             >  1:3301691/1‑35
       CTGATAAGACGCACAGCGTCGCATCAGGCAACGGC             >  1:16675030/1‑35
       CTGATAAGACGCACAGCGTCGCATCAGGCAACGGC             <  1:6602472/35‑1
        TGATAAGACGCACAGCGTCGCATCAGGCAACGGCT            >  1:14586699/1‑35
        TGATAAGACGCACAGCGTCGCATCAGGCAACGGCT            <  1:2372114/35‑1
        TGATAAGACGCACAGCGTCGCATCAGGCAACGGCT            <  1:11864724/35‑1
        TGATAAGACGCACAGCGTCGCATCAGGCAACGGCT            <  1:9123500/35‑1
        TGATAAGACGCACAGCGTCGCATCAGGCAACGGCT            >  1:1343445/1‑35
         GATAAGACGCACAGCGTCGCATCAGGCAACGGCTG           <  1:10291273/35‑1
         GATAAGACGCACAGCGTCGCATCAGGCAACGGCTG           <  1:16696645/35‑1
         GATAAGACGCACAGCGTCGCATCAGGCAACGGCTG           <  1:12956331/35‑1
         GATAAGACGCACAGCGTCGCATCAGGCAACGGCTG           >  1:5473261/1‑35
         GATAAGACGCACAGCGTCGCATCAGGCAACGGCTG           >  1:4773815/1‑35
          ATAAGACGCACAGCGTCGCATCAGGCAACGGCTGG          >  1:19661338/1‑35
          ATAAGACGCACAGCGTCGCATCAGGCAACGGCTGG          >  1:4050346/1‑35
          ATAAGACGCACAGCGTCGCATCAGGCAACGGCTGG          >  1:2444031/1‑35
           TAAGACGCACAGCGTCGCATCAGGCCACGGCTGGc         >  1:7605133/1‑34
           TAAGACGCACAGCGTCGCATCAGGCAACGGCTGGc         >  1:1456709/1‑34
           TAAGACGCACAGCGTCGCATCAGGCAACGGCTGGG         >  1:10317162/1‑35
           TAAGACGCACAGCGTCGCATCAGGCAACGGCTGGG         >  1:3940467/1‑35
            AAGACGCACAGCGTCGCATCAGGCAACGGCTGGcg        >  1:17140220/1‑33
            AAGACGCACAGCGTCGCATCAGGCAACGGCTGGcg        >  1:19234890/1‑33
            AAGACGCACAGCGTCGCATCAGGCAACGGCTGGcg        >  1:13737259/1‑33
            AAGACGCACAGCGTCGCATCAGGCAACGGCTGGGg        >  1:3674973/1‑34
            AAGACGCACAGCGTCGCATCAGGCAACGGCTGGGg        >  1:4669065/1‑34
             AGACGCACAGCGTCGCATCAGGCAACGGCTGGcgg       >  1:899040/1‑32
             AGACGCACAGCGTCGCATCAGGCAACGGCTGGcgg       >  1:1522519/1‑32
             AGACGCACAGCGTCGCATCAGGCAACGGCTGGGgg       >  1:6032294/1‑33
             AGACGCACAGCGTCGCATCAGGCAACGGCTGGGgg       >  1:5728360/1‑33
             AGACGCACAGCGTCGCATCAGGCAACGGCTGGGgg       >  1:7458274/1‑33
              GACGCACAGCGTCGCATCAGGCAACGGCTGGGGGG      >  1:11303979/1‑35
               ACGCACAGCGTCGCATCAGGCAACGGCTGGGGGGG     >  1:10113226/1‑35
               ACGCACAGCGTCGCATCAGGCAACGGCTGGGGGGG     >  1:16414833/1‑35
                CGCACAGCGTCGCATCAGGCAACGGCTGGGGGGGG    >  1:10064183/1‑35
                CGCACAGCGTCGCATCAGGCAACGGCTGGGGGGGG    >  1:3429507/1‑35
                 GCACAGCGTCGCATCAGGCAACGGCTGGGGGGGGG   >  1:16270382/1‑35
                 GCACAGCGTCGCATCAGGCAACGGCTGGGGGGGGG   >  1:14292479/1‑35
                  CACAGCGTCGCATCAGGCAACGGCTGGGGGGGGGg  >  1:20188198/1‑34
                                                     
TGTAGGCCTGATAAGACGCACAGCGTCGCATCAGgcaacggctg‑‑‑‑‑‑‑‑‑  >  REL606/3320198‑3320231
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAACGGCTGGGTGGGGGA  <  REL606/3686161‑3686143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.