New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3676501106 (1.030)13 (0.130) 7/46 NT 12.1% coding (1242/1278 nt) yiaN predicted transporter
?REL606 = 3822225 91 (0.890)coding (203/1323 nt) glvG predicted 6‑phospho‑beta‑glucosidase

Only 100 of 195 total aligned reads displayed.

TATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTCCCTTTGAAATGGATTAATT  >  REL606/3676467‑3676535
                                  |                                  
tataTTCATTATTAGTCGTATTTGTTTTTATTccc                                    >  1:9109415/1‑35 (MQ=255)
tataTTCATTATTAGTCGTATTTGTTTTTATTccc                                    <  1:10942995/35‑1 (MQ=255)
 atatTCATTATTAGTCGTATTTGTTTTTATTCCCg                                   >  1:19371687/1‑35 (MQ=255)
 atatTCATTATTAGTCGTATTTGTTTTTATTCCCg                                   >  1:7900736/1‑35 (MQ=255)
 atatTCATTATTAGTCGTATTTGTTTTTATTCCCg                                   >  1:12101785/1‑35 (MQ=255)
  tatTCATTATTAGTCGTATTTGTTTTTATTCCCGa                                  <  1:20300464/35‑1 (MQ=255)
  tatTCATTATTAGTCGTATTTGTTTTTATTCCCGa                                  >  1:18770435/1‑35 (MQ=255)
  tatTCATTATTAGTCGTATTTGTTTTTATTCCCGa                                  >  1:8619898/1‑35 (MQ=255)
   atTCATTATTAGTCGTATTTGTTTTTATTCCCGAt                                 >  1:18925521/1‑35 (MQ=255)
   atTCATTATTAGTCGTATTTGTTTTTATTCCCGAt                                 <  1:10030381/35‑1 (MQ=255)
   atTCATTATTAGTCGTATTTGTTTTTATTCCCGAt                                 <  1:18039613/35‑1 (MQ=255)
    ttCATTATTAGTCGTATTCGTTTTTATTCCCGAtc                                <  1:13469220/35‑1 (MQ=255)
     tCATTATTAGTCGTATTTGTTTTTATTCCCGAtct                               <  1:11026501/35‑1 (MQ=255)
     tCATTATTAGTCGTATTTGTTTTTATTCCCGAtct                               <  1:2514026/35‑1 (MQ=255)
     tCATTATTAGTCGTATTTGTTTTTATTCCCGAtct                               <  1:14329528/35‑1 (MQ=255)
     tCATTATTAGTCGTATTTGTTTTTATTCCCGAtct                               <  1:4846246/35‑1 (MQ=255)
      cATTATTAATCGTATTTGTTTTTATTCCCGAtctc                              <  1:13094594/35‑1 (MQ=255)
       attattAGTCGTATTTGTTTTTATTCCCGATCtca                             <  1:3090047/35‑1 (MQ=255)
        ttattaGTCGTATTTGTTTTTATTCCCGATCtcat                            <  1:7945783/35‑1 (MQ=255)
        ttattaGTCGTATTTGTTTTTATTCCCGATCtcat                            <  1:13812643/35‑1 (MQ=255)
        ttattaGTCGTATTTGTTTTTATTCCCGATCtcat                            <  1:9566943/35‑1 (MQ=255)
        ttattaGTCGTATTTGTTTTTATTCCCGATCtcat                            >  1:10091553/1‑35 (MQ=255)
        ttattaGTCGTATTTGTTTTTATTCCCGATCtcat                            <  1:1813679/35‑1 (MQ=255)
        ttattaGTCGTATTTGTTTTTATTCCCGATCtcat                            >  1:6772275/1‑35 (MQ=255)
         tattaGTCGTATTTGTTTTTATTCCCGATCtcatc                           <  1:369402/35‑1 (MQ=255)
         tattaGTCGTATTTGTTTTTATTCCCGATCtcatc                           >  1:8523401/1‑35 (MQ=255)
         tattaGTCGTATTTGTTTTTATTCCCGATCtcatc                           >  1:17228924/1‑35 (MQ=255)
         tattaGTCGTATTTGTTTTTATTCCCGATCtcatc                           >  1:16481252/1‑35 (MQ=255)
           ttaGTCGTATTTGTTTTTATTCCCGATCTcatcat                         >  1:15581354/1‑35 (MQ=255)
             aGTCGTATTTGTTTTTATTCCCGATCTCATCAtcc                       >  1:20354263/1‑35 (MQ=255)
             aGTCGTATTTGTTTTTATTCCCGATCTCATCAtcc                       >  1:5014686/1‑35 (MQ=255)
             aGTCGTATTTGTTTTTATTCCCGATCTCATCAtcc                       >  1:9827162/1‑35 (MQ=255)
              gTCGTATTTGTTTTTATTCCCGATCTCATCAtcct                      <  1:16252501/35‑1 (MQ=255)
              gTCGTATTTGTTTTTATTCCCGATCTCATCAtcct                      >  1:5721683/1‑35 (MQ=255)
              gTCGTATTTGTTTCTATTCCCGATCTCATCAtcct                      >  1:17762936/1‑35 (MQ=255)
               tCGTATTTGTTTTTATTCCCGATCTCATCAtcctc                     <  1:5193436/35‑1 (MQ=255)
               tCGTATTTGTTTTTATTCCCGATCTCATCAtcctc                     >  1:18455863/1‑35 (MQ=255)
                cGTATTTGTTTTTATTCCCGATCTCATCAtcctcc                    <  1:20007845/35‑1 (MQ=255)
                cGTATTTGTTTTTATTCCCGATCTCATCAtcctcc                    >  1:12417943/1‑35 (MQ=255)
                 gTATTTGTTTTTATTCCCGATCTCATCATCCTccc                   >  1:3496998/1‑35 (MQ=255)
                 gTATTTGTTTTTATTCCCGATCTCATCATCCTccc                   <  1:6918013/35‑1 (MQ=255)
                 gTATTTGTTTTTATTCCCGATCTCATCATCCTccc                   <  1:15967306/35‑1 (MQ=255)
                 gTATTTGTTTTTATTCCCGATCTCATCATCCTccc                   >  1:8174498/1‑35 (MQ=255)
                  tATTTGTTTTTATTCCCGATCTCATCATCCTCCCt                  <  1:8034086/35‑1 (MQ=255)
                  tATTTGTTTTTATTCCCGATCTCATCATCCTCCCt                  >  1:8830612/1‑35 (MQ=255)
                  tATTTGTTTTTATTCCCGATCTCATCATCCTCCCt                  <  1:4095771/35‑1 (MQ=255)
                   aTTTGTTTTTATTCCCGATCTCATCATCCTCCCtt                 >  1:5574114/1‑35 (MQ=255)
                   aTTTGTTTTTATTCCCGATCTCATCATCCTCCCtt                 <  1:12648559/35‑1 (MQ=255)
                    tttGTTTTTATTCCCGATCTCATCATCCTCCCttt                <  1:1584123/35‑1 (MQ=255)
                     ttGTTTTTATTCCCcccaccgatcctgaagtagcg               <  1:20530198‑M1/35‑22 (MQ=255)
                     ttGTTTTTATTCCCGATCTCATCATCCTCCCTTTg               <  1:10735134/35‑1 (MQ=255)
                     ttGTTTTTATTCCCGATCTCATCATCCTCCCTTTg               <  1:7527473/35‑1 (MQ=255)
                     ttGTTTTTATTCCCGATCTCATCATCCTCCCTTTg               >  1:20392137/1‑35 (MQ=255)
                     ttGTTTTTATTCCCGATCTCATCATCCTCCCTTTg               <  1:12949956/35‑1 (MQ=255)
                      tGTTTTTATTCCCcccaccgatcctgaagtagcgt              <  1:3339658‑M1/35‑23 (MQ=255)
                      tGTTTTTAGTCCCcccaccgatcctgaagtagcgt              <  1:19036717‑M1/35‑23 (MQ=255)
                       gTTTTTATTCCCGATCTCATCATCCTCCCTTTGaa             >  1:20114625/1‑35 (MQ=255)
                       gTTTTTATTCCCGATCTCATCATCCTCCCTTTGaa             >  1:116452/1‑35 (MQ=255)
                       gTTTTTATTCCCGATCTCATCATCCTCCCTTTGaa             >  1:14606070/1‑35 (MQ=255)
                       gTTTTTATTCCCGATCTCATCATCCTCCCTTTGaa             >  1:17646537/1‑35 (MQ=255)
                       gTTTTTATTCCCGATCTCATCATCCTCCCTTTGaa             >  1:17574223/1‑35 (MQ=255)
                       gTTTTTATTCCCGACCTCATCATCCTCCCTTTTaa             >  1:2659490/1‑35 (MQ=37)
                         ttttATTCCCGATCTCATCATCCTCCCTTTGAAAt           <  1:601978/35‑1 (MQ=255)
                          tttATTCCCcccaccgatcctgaagtagcgttcag          <  1:1998616‑M1/35‑27 (MQ=255)
                          tttATTCCCccaaccgatcctgaagtagcgttcag          <  1:17846903‑M1/35‑27 (MQ=255)
                          tttATTCCCGATCTCATCATCCTCCCTTTGAAATg          >  1:3582462/1‑35 (MQ=255)
                          tttATTCCCGATCTCATCATCCTCCCTTTGAAATg          >  1:5767017/1‑35 (MQ=255)
                          tttATTCCCGATCTCATCATCCTCCCTTTGAAATg          >  1:11469331/1‑35 (MQ=255)
                          tttATTCCCGATCTCATCATCCTCCCTTTGAAATg          <  1:16313431/35‑1 (MQ=255)
                          tttATTCCCGATCTCATCATCCTCCCTTTGAAATg          <  1:10016135/35‑1 (MQ=255)
                           ttATTCCCGATCTCATCATCCTCCCTTTGAAAttg         >  1:17362846/1‑33 (MQ=255)
                           ttATTCCCGATCTCATCATCCTCCCTTTGAAATgg         >  1:20574187/1‑35 (MQ=255)
                            tATTCCCGATCTCATCATCCTCCCTTTGAAATGGa        >  1:11333100/1‑35 (MQ=255)
                            tATTCCCGATCTCATCATCCTCCCTTTGAAATGGa        >  1:5358737/1‑35 (MQ=255)
                            tATTCCCGATCTCATCATCCTCCCTTTGAAATGGa        >  1:11253796/1‑35 (MQ=255)
                             ataccccccaccgatcctgaagtagcgttcagcga       <  1:645523‑M1/32‑30 (MQ=255)
                             aTTCCCGATCTCATCATCCTCCCTTTGAAATGGat       <  1:14486334/35‑1 (MQ=255)
                             aTTCCCGATCTCATCATCCTCCCTTTGAAATGGat       <  1:19171268/35‑1 (MQ=255)
                             aTTCCCGATCTCATCATCCTCCCTTTGAAATGGat       <  1:14980644/35‑1 (MQ=255)
                             aTTCCCGATCTCATCATCCTCCCTTTGAAATGGat       >  1:15092671/1‑35 (MQ=255)
                              ttCCCGATCTCATCATCCTCCCTTTGAAATGGatt      <  1:10559812/35‑1 (MQ=255)
                               tCCCGATCTCATCATCCTCCCTTTGAAATGGatta     >  1:13580547/1‑35 (MQ=255)
                               tCCCGATCTCATCATCCTCCCTTTGAAATGGatta     <  1:15489250/35‑1 (MQ=255)
                               tCCCGATCTCATCATCCTCCCTTTGAAATGGatta     >  1:6082575/1‑35 (MQ=255)
                               tCCCGATCTCATCATCCTCCCTTTGAAATGGatta     <  1:1704064/35‑1 (MQ=255)
                               tCCCGATCTCATCATCCTCCCTTTGAAATGGatta     <  1:18500550/35‑1 (MQ=255)
                               tCCCGATCTCATCATCCTCCCTTTGAAATGGatta     <  1:5151462/35‑1 (MQ=255)
                               cccccccaccgatcctgaagtagcgttcagcgacg     <  1:4474945‑M1/34‑32 (MQ=255)
                               cccccccaccgatcctgaagtagcgttcagcgacg     <  1:8193897‑M1/34‑32 (MQ=255)
                                ccccccaccgatcctgaagtagcgttcagcgacgt    <  1:13357283‑M1/35‑33 (MQ=255)
                                ccccccaccgatcctgaagtagcgttcagcgacgt    <  1:1986901‑M1/35‑33 (MQ=255)
                                cccGATCTCATCATCCTCCCTTTGAAATGGattaa    >  1:17548830/1‑35 (MQ=255)
                                cccGATCTCATCATCCTCCCTTTGAAATGGattaa    <  1:3919533/35‑1 (MQ=255)
                                 cccccaccgatcctgaagtagcgttcagcgacgtt   <  1:10310554‑M1/35‑34 (MQ=255)
                                 cccccaccgatcctgaagtagcgttcagcgacgtt   <  1:868682‑M1/35‑34 (MQ=255)
                                 cccccaccgatcctgaagtagcgttcagcgacgtt   <  1:6362945‑M1/35‑34 (MQ=255)
                                 cccccaccgatcctgaagtagcgttcagcgacgtt   <  1:2135200‑M1/35‑34 (MQ=255)
                                 ccGATCTCATCATCCTCCCTTTGAAATGGattaat   >  1:12364142/1‑35 (MQ=255)
                                 ccGATCTCATCATCCTCCCTTTGAAATGGattaat   <  1:1873827/35‑1 (MQ=255)
                                 ccGATCTCATCATCCTCCCTTTGAAATGGattaat   <  1:19540298/35‑1 (MQ=255)
                                  |                                  
TATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTCCCTTTGAAATGGATTAATT  >  REL606/3676467‑3676535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.