New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3265224 =32 (0.310)6 (0.070) 3/38 NT 9.0% coding (1028/1434 nt) dacB D‑alanyl‑D‑alanine carboxypeptidase
?REL606 = 3603631 96 (1.180)coding (778/1014 nt) yhjD conserved inner membrane protein

GGGTCGGACGCCGTGCGTCAGATCCTGCGCCAGCAAGCCGGTGTCGATATTGGAAACACCATTATTGCC  >  REL606/3265190‑3265258
                                  |                                  
ttctggcggttgccgcgccaccgtccgcgcaaaaa                                    >  1:8684602‑M1/35‑35 (MQ=255)
ttcgggcggttgccgcgccaccgtccgcgcaaaaa                                    >  1:13517834‑M1/35‑35 (MQ=255)
gggTCGGACGCCGTGCGTCAGATCCTGCGCCAGCa                                    >  1:10911039/1‑35 (MQ=255)
 tctggcggttgccgcgccaccgtgcgcgcaaaaaa                                   >  1:1373533‑M1/34‑35 (MQ=255)
 ggTCGGACGCCGTGCGTCAGATCCTGCGCCAGCaa                                   <  1:1763193/35‑1 (MQ=255)
 ggTCGGACGCCGTGCGTCAGATCCTGCGCCAGCaa                                   >  1:19172640/1‑35 (MQ=255)
 ggTCGGACGCCGTGCGTCAGATCCTGCGCCAGCaa                                   <  1:1483564/35‑1 (MQ=255)
 ggTCGGACGCCGTGCGTCAGATCCTGCGCCAGCaa                                   <  1:20524190/35‑1 (MQ=255)
 ggTCGGACGCCGTGCGTCAGATCCTGCGCCAGCaa                                   >  1:379719/1‑35 (MQ=255)
 ggTCGGACGCCGTGCGTCAGATCCTGCGCCAGCaa                                   >  1:4022940/1‑35 (MQ=255)
 ggTCGGACGCCGTGCGTCAGATCCTGCGCCAGCaa                                   <  1:5958482/35‑1 (MQ=255)
 ggTCGGACGCCGTGCGTCAGATCCTGCGCCAGCaa                                   <  1:11448520/35‑1 (MQ=255)
 ggTCGGACGCCGTGCGTCAGATCCTGCGCCAGCaa                                   >  1:9222279/1‑35 (MQ=255)
  gTCGGACGCCGTGCGTCAGATCCTGCGCCCGAAAg                                  >  1:5027713/1‑35 (MQ=37)
   tggcggttgccgcgccaccgtccgcgcaaaaAAGc                                 >  1:8090311‑M1/32‑35 (MQ=255)
   tCGGACGCCGTGCGTCAGATCCTTCGCCAGCAAGc                                 >  1:19839025/1‑35 (MQ=255)
   tCGGACGCCGTGCGTCAGATCCTGCGCCAGCAAGc                                 <  1:7120986/35‑1 (MQ=255)
   tCGAACCCCGCGCGTCAGATCCTGCGCCAGCAAGc                                 <  1:13245117/35‑1 (MQ=25)
    ggcgtttgccgcgccaccgtccgcgcaaaaAAGcc                                >  1:4416670‑M1/31‑35 (MQ=255)
    cGGACGCCGTGCGTCAGATCCTGCGCCAGCAAGcc                                >  1:17874245/1‑35 (MQ=255)
    cGGACGCCGTGCGTCAGATCCTGCGCCAGCAAGcc                                >  1:6789556/1‑35 (MQ=255)
     ggACGCCGTGCGTCAGATCCTGCGCCAGCAAGCCg                               >  1:238753/1‑35 (MQ=255)
      gccGCCGTGCGTCAGATCCTGCGCCAGCAAGCCgg                              <  1:3168044/33‑1 (MQ=255)
      gACGCCGTGCGTCAGATCCTGCGCCAGCAAGCCgg                              >  1:2085819/1‑35 (MQ=255)
       aCGCCGTGCGTCAGATCCTGCGCCAGCAAGCCGgt                             >  1:6327389/1‑35 (MQ=255)
         gCCGTGCGTCAGATCCTGCGCCAGCAAGCCGgtgt                           >  1:2129458/1‑35 (MQ=255)
         gCCGTGCGTCAGATCCTGCGCCAGCAAGCCGgtgt                           >  1:2504032/1‑35 (MQ=255)
         gCCGTGCGTCAGATCCTGCGCCAGCAAGCCGgtgt                           >  1:9517092/1‑35 (MQ=255)
          ccGTGCGTCAGATCCTGCGCCAGCAAGCCGGTGTc                          >  1:9904023/1‑35 (MQ=255)
          ccGTGCGTCAGATCCTGCGCCAGCAAGCCGGTGTc                          >  1:14789361/1‑35 (MQ=255)
          ccGTGCGTCAGATCCTGCGCCAGCAAGCCGGTGTc                          >  1:15015677/1‑35 (MQ=255)
           cGTGCGTCAGATCCTGCGCCAGCAAGCCGGTGTCg                         >  1:5533038/1‑35 (MQ=255)
            gTGCGTCAGATCCTGCGCCAGCAAGCCGGTGTCGa                        >  1:8597273/1‑35 (MQ=255)
             tGCGTCAGATCCTGCGCCAGCAAGCCGGTGTCGat                       >  1:17607375/1‑35 (MQ=255)
               cGTCAGATCCTGCGCCAGCAAGCCGGTGTCGatat                     >  1:10858690/1‑35 (MQ=255)
                gTCAGATCCTGCGCCAGCAAGCCGGTGTCGATAtt                    >  1:19257470/1‑35 (MQ=255)
                 tCAGATCCTGCGCCAGCAAGCCGGTGTCGATATTg                   >  1:19722940/1‑35 (MQ=255)
                  cAGATCCTGCGCCAGCAAGCCGGTGTCGATATTgg                  >  1:1268076/1‑35 (MQ=255)
                  cAGATCCTGCGCCAGCAAGCCGGTGTCGATATTgg                  >  1:10684130/1‑35 (MQ=255)
                    gATCCTGCGCCAGCAAGCCGGTGTCGATATTGGaa                >  1:11427263/1‑35 (MQ=255)
                    cacccTGCGCCAAAAAGCCGGTGTCGATATTGGaa                <  1:2831142/32‑1 (MQ=25)
                     aTCCTGCGCCAGCAAGCCGGTGTCGATATTGGaaa               >  1:11665091/1‑35 (MQ=255)
                      tCCTGCGCCAGCAAGCCGGTGTCGATATTGGAAac              >  1:15180618/1‑35 (MQ=255)
                      cccTGCGCAAAAAAGCCGGTGTCGATATTGGAAac              <  1:20478837/34‑1 (MQ=21)
                       cgtgcgcaaaaAAGCCGGTGTCGATATTGGAAaca             >  1:10545634‑M1/12‑35 (MQ=255)
                       ccTGCGCCAGCAAGCCGGTGTCGATATTGGAAaca             >  1:3314442/1‑35 (MQ=255)
                        cTGCGCCAGCAAGCCGGTGTCGATATTGGAAacac            >  1:12884338/1‑35 (MQ=255)
                        cTGCGCCAGCAAGCCGGTGTCGATATTGGAAacac            >  1:13715253/1‑35 (MQ=255)
                        cTGCGCCAGCAAGCCGGTGTCGATATTGGAAacac            >  1:6003032/1‑35 (MQ=255)
                         tGCGCCAGCAAGCCGGTGTCGATATTGGAAACAcc           >  1:15108774/1‑35 (MQ=255)
                         ngcgcCAGCAAGCCGGTGTCGATATTGGAAACAcc           >  1:3897731/2‑35 (MQ=255)
                         cgcgcaaaaAAGCCGGTGTCGATATTGGAAACAcc           >  1:4595640‑M1/10‑35 (MQ=255)
                         cgcccaaaaAAGCCGGTGTCGATATTGGAAACAcc           >  1:720638‑M1/10‑35 (MQ=255)
                          gcgcaaaaAAGCCGGTGTCGATATTGGAAACACCa          >  1:9190498‑M1/9‑35 (MQ=255)
                          gcccaaaaAAGCCGGTGTCGATATTGGAAACACCa          >  1:4220874‑M1/9‑35 (MQ=255)
                           cgcaaaaAAGCCGGTGTCGATATTGGAAACACCat         >  1:16740330‑M1/8‑35 (MQ=255)
                            gcCAGCAAGCCGGTGTCGATATTGGAAACACCatt        >  1:16678355/1‑35 (MQ=255)
                            gcCAGCAAGCCGGTGTCGATATTGGAAACACCatt        >  1:14687708/1‑35 (MQ=255)
                            gcCAGCAAGCCGGTGTCGATATTGGAAACACCatt        >  1:14861876/1‑35 (MQ=255)
                            acaaaaAAGCCGGTGTCGATATTGGAAACACCatt        >  1:7740324‑M1/7‑35 (MQ=255)
                            acaaaaAAGCCGGTGTCGATATTGGAAACACCatt        >  1:7882598‑M1/7‑35 (MQ=255)
                             acaaaAAGCCGGTGTCGATATTGGAAACACCatta       >  1:13024536‑M1/6‑35 (MQ=255)
                              gagaAAGCCGGTGTCGATATTGGAAACACCattat      >  1:14533975‑M1/5‑35 (MQ=255)
                              cAGCAAGCCGGTGTCGATATTGGAAACACCattat      >  1:10714860/1‑35 (MQ=255)
                              aaaaAAGCCGGTGTCGATATTGGAAACACCattat      >  1:17684407‑M1/5‑35 (MQ=255)
                              aaaaAAGCCGGTGTCGATATTGGAAACACCattat      >  1:7095330‑M1/5‑35 (MQ=255)
                               tctAAGCCGGTGTCGATATTGGAAACACCattatt     >  1:13594444‑M1/4‑35 (MQ=255)
                               aaaAAGCCGGTGTCGATATTGGAAACACCattatt     >  1:4955848‑M1/4‑35 (MQ=255)
                               aGCAAGCCGGTGTCGATATTGGAAACACCattatt     >  1:20499667/1‑35 (MQ=255)
                               aGCAAGCCGGTGTCGATATTGGAAACACCattatt     >  1:17531551/1‑35 (MQ=255)
                                gCAAGCCGGTGTCGATATTGGAAACACCATTATTg    >  1:5041569/1‑35 (MQ=255)
                                 cAAGCCGGTGTCGATATTGGAAACACCATTATTGc   >  1:8342777/1‑35 (MQ=255)
                                 cAAGCCGGTGTCGATATTGGAAACACCATTATTGc   >  1:10109182/1‑35 (MQ=255)
                                 cAAGCCGGTGTCGATATTGGAAACACCATTATTGc   >  1:11344441/1‑35 (MQ=255)
                                 cAAGCCGGTGTCGATATTGGAAACACCATTATTGc   >  1:5327552/1‑35 (MQ=255)
                                 aAAGCCGGTGTCGATATTGGAAACACCATTATTGc   >  1:6933148‑M1/2‑35 (MQ=255)
                                 aAAGCCGGTGTCGATATTGGAAACACCATTATTGc   >  1:5477107‑M1/2‑35 (MQ=255)
                                 aAAGCCGGTGTCGATATTGGAAACACAATTATTGc   >  1:4903020‑M1/2‑35 (MQ=255)
                                  AAGCCGTTGTCGATATTGGAAACACCATTATTGcc  <  1:7275202‑M1/35‑1 (MQ=255)
                                  AAGCCGGTGTCGATATTGGAAACACCGTTATTGcc  <  1:1145561‑M1/35‑1 (MQ=255)
                                  AAGCCGGTGTCGATATTGGAAACACCATTATTGcc  >  1:8366555‑M1/1‑35 (MQ=255)
                                  AAGCCGGTGTCGATATTGGAAACACCATTATTGcc  <  1:8708752‑M1/35‑1 (MQ=255)
                                  AAGCCGGTGTCGATATTGGAAACACCATTATTGcc  <  1:9058543‑M1/35‑1 (MQ=255)
                                  AAGCCGGTGTCGATATTGGAAACACCATTATTGcc  <  1:12610426‑M1/35‑1 (MQ=255)
                                  AAGCCGGTGTCGATATTGGAAACACCATTATTGcc  >  1:10669520‑M1/1‑35 (MQ=255)
                                  AAGCCGGTGTCGATATTGGAAACACCATTATTGcc  <  1:210777‑M1/35‑1 (MQ=255)
                                  AAGCCGGTGTCGATATTGGAAACACCATTATTGcc  >  1:9672832‑M1/1‑35 (MQ=255)
                                  AAGCCGGTGTCGATATTGGAAACACCATTATTGcc  >  1:17671002‑M1/1‑35 (MQ=255)
                                  |                                  
GGGTCGGACGCCGTGCGTCAGATCCTGCGCCAGCAAGCCGGTGTCGATATTGGAAACACCATTATTGCC  >  REL606/3265190‑3265258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.