New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 197679 = | 131 (1.270) | 16 (0.200) | 5/38 | NT | 15.6% | intergenic (+120/‑66) | ispC/uppS | 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase/undecaprenyl pyrophosphate synthase |
? | REL606 | 2304413 = | 69 (0.850) | coding (802/903 nt) | yfaD | hypothetical protein |
Only 100 of 229 total aligned reads displayed.
GCTTTATAAGGTCAGGTATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGT > REL606/197645‑197713 | gCTTTATAAGGTCAGGTATGCCGTGGTTTTACACg < 1:14750407/35‑1 (MQ=255) gCTTTATAAGGTCAGGTATGCCGTGGTTTTACACg > 1:16999177/1‑35 (MQ=255) agccctgttccagcatgcgcaaagcaattttaatg > 1:6529238‑M1/35‑35 (MQ=255) agccctgttccagcatgcgcaaagcaattttaatg < 1:16235733‑M1/1‑1 (MQ=255) agccctgttccagcatgcgcaaagcaattttaatg > 1:11291901‑M1/35‑35 (MQ=255) gccctgttccagcatgcgcaaagcaattttaatgg < 1:9426481‑M1/2‑1 (MQ=255) gccctgttccagcatgcgcaaagcaattttaatgg > 1:8436387‑M1/34‑35 (MQ=255) gccctgttccagcatgcgcaaagcaattttaatgg > 1:11605526‑M1/34‑35 (MQ=255) gccctgttccagcatgcgcaaagcaattttaatgg > 1:6700650‑M1/34‑35 (MQ=255) cTTTATAAGGTCAGGTATGCCGTGGTTTTACACgg < 1:3025075/35‑1 (MQ=255) cTTTATAAGGTCAGGTATGCCGTGGTTTTACACgg > 1:8379996/1‑35 (MQ=255) cTTTATAAGGTCAGGTATGCCGTGGTTTTACACgg < 1:11110224/35‑1 (MQ=255) tttATAAGGTCAGGTATGCCGTGGTTTTACACGGc > 1:4460527/1‑35 (MQ=255) ttATAAGGTCAGGTATGCCGTGGTTTTACACGGCt < 1:2635532/35‑1 (MQ=255) ttATAAGGTCAGGTATGCCGTGGTTTTACACGGCt < 1:13360481/35‑1 (MQ=255) cctgttccagcatgcgcaaagcaattttaatGGCt > 1:5605454‑M1/32‑35 (MQ=255) cctgttccagcatgcgaaaagcaattttaatGGCt > 1:6984188‑M1/32‑35 (MQ=255) tataAGGTCAGGTATGCCGTGGTTTTACACGGCtt < 1:5118311/35‑1 (MQ=255) tataAGGTCAGGTATGCCGTGGTTTTACACGGCtt < 1:96146/35‑1 (MQ=255) ctgttccagcatgcgcaaagcaattttaatGGCtt > 1:4587283‑M1/31‑35 (MQ=255) ctgttccagcatgcgcaaagcaattttaatGGCtt < 1:8802555‑M1/5‑1 (MQ=255) tgttccagcatgcgcaaagcaattttaatGGCttt < 1:17197062‑M1/6‑1 (MQ=255) ataAGGTCAGGTATGCCGTGGTTTTACACGGCttt < 1:18068191/35‑1 (MQ=255) ataAGGTCAGGTATGCCGTGGTTTTACACGGCttt < 1:15564586/35‑1 (MQ=255) taAGGTCAGGTATGCCGTGGTTTTACACGGCtttt > 1:3172591/1‑35 (MQ=255) taAGGTCAGGTATGCCGTGGTTTTACACGGCtttt > 1:20466666/1‑35 (MQ=255) taAGGTCAGGTATGCCGTGGTTTTACACGGCtttt < 1:20295610/35‑1 (MQ=255) taAGGTCAGGTATGCCGTGGTTTTACACGGCtttt > 1:15071713/1‑35 (MQ=255) gttccagcatgcgcaaagcaattttaatGGCtttt < 1:10373714‑M1/7‑1 (MQ=255) gttccagcatgcgcaaagcaattttaatGGCtttt < 1:8132584‑M1/7‑1 (MQ=255) ttccagcatgcgcaaagcaattttaatGGCttttt < 1:14206558‑M1/8‑1 (MQ=255) aaGGTCAGGTATGCCGTGGTTTTACACGGCttttt < 1:7164671/35‑1 (MQ=255) aaGGTCAGGTATGCCGTGGTTTTACACGGCttttt > 1:19753345/1‑35 (MQ=255) aaGGTCAGGTATGCCGTGGTTTTACACGGCttttt < 1:18782632/35‑1 (MQ=255) aaGGTCAGGTATGCCGTGGTTTTACACGGCttttt < 1:1572568/35‑1 (MQ=255) tccagcatgcgcaaagcaattttaatGGctttttc < 1:2356368‑M1/9‑2 (MQ=255) aGGTCAGGTATGCCGTGGTTTTACACGGCtttttt < 1:18215051/35‑1 (MQ=255) ggTCAGGTATGCCGTGGTTTTACACGGCttttttt > 1:14488187/1‑35 (MQ=255) ggTCAGGTATGCCGTGGTTTTACACGGCttttttt > 1:1248110/1‑35 (MQ=255) ggTCAGGTATGCCGTGGTTTTACACGGCttttttt < 1:11259140/35‑1 (MQ=255) ccagcatgcgcaaagcaattttaatGGCttttttt < 1:566140‑M1/10‑1 (MQ=255) gTCAGGTATGCCGTGGTTTTACACGGCtttttttt < 1:11777235/35‑1 (MQ=255) gTCAGGTATGCCGTGGTTTTACACGGCtttttttt < 1:12221208/35‑1 (MQ=255) cagcatgcgcaaagcaattttaatGGCtttttttt < 1:13410027‑M1/11‑1 (MQ=255) tCAGGTATGCCGTGGTTTTACACGGCTTTTTTTTg > 1:4390797/1‑35 (MQ=255) agcatgcgcaaagcaattttaatGGcttttttttt < 1:7131981‑M1/12‑2 (MQ=255) agcatgcgcaaagcaattttaatGGCTTTTTCTTg < 1:1576256‑M1/12‑1 (MQ=255) gcatgcgcaaagcaattttaatGGCTTTTTTTTGt < 1:3325174‑M1/13‑1 (MQ=255) cAGGTATGCCGTGGTTTTACACGGCTTTTTTTTGt < 1:3628799/35‑1 (MQ=255) catgcgcaaagcaattttaatggctttttttttca < 1:15233189‑M1/14‑4 (MQ=255) aGGTATGCCGTGGTTTTACACGGCTTTTTTTTGta < 1:14394237/35‑1 (MQ=255) ggTATGCCGTGGTTTTACACGGCTTTTTTTTGtat > 1:19946031/1‑35 (MQ=255) ggTATGCCGTGGTTTTACACGGCTTTATTTTGtat > 1:2178493/1‑35 (MQ=255) atgcgcaaagcaattttaatGGCTTTTTtttgcat < 1:1939286‑M1/15‑4 (MQ=255) tgcgcaaagcaattttaatGGCTTTTTTTTGcata < 1:16130143‑M1/16‑1 (MQ=255) tATGCCGTGGTTTTACACGGCTTTTTTTTGTATAg < 1:4892532/35‑1 (MQ=255) tATGCCGTGGTTTTACACGGCTTTTTTTTGTATAg > 1:5402970/1‑35 (MQ=255) gcgcaaagcaattttaatGGCTTTTTTTTgcatac < 1:5762618‑M1/17‑2 (MQ=255) aTGCCGTGGTTTTACACGGCTTTTTTTTGTATAgg < 1:8326004/35‑1 (MQ=255) tGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGc > 1:13001150/1‑35 (MQ=255) tGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGc < 1:14267863/35‑1 (MQ=255) tGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGc > 1:12641514/1‑35 (MQ=255) gCCGTGGTTTTACACGGCTTTTTTTTTTATAGGCt > 1:19376259/1‑35 (MQ=255) gCCGTGGTTTTACACGGCTTTTTTTTTTATAGGCt > 1:18921004/1‑35 (MQ=255) gCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCt < 1:16585282/35‑1 (MQ=255) gCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCt < 1:9204421/35‑1 (MQ=255) gCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCt < 1:19054702/35‑1 (MQ=255) gCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCt < 1:9057360/35‑1 (MQ=255) ccGTGGTTTTACACGGCTTTTTTTTGTATAGGCtt > 1:749345/1‑35 (MQ=255) ccGTGGTTTTACACGGCTTTTTTTTGTATAGGCtt < 1:16721479/35‑1 (MQ=255) ccGTGGTTTTACACGGCTTTTTTTTGTATAGGCtt < 1:4871132/35‑1 (MQ=255) ccGTGGTTTTACACGGCTTTTTTTTGTATAGGCtt > 1:10587796/1‑35 (MQ=255) ccGTGGTTTTACACGGCTTTTTTTTGTATAGGCtt > 1:17422301/1‑35 (MQ=255) ccGTGGTTTTACACGGCTTTTTTTTGTATAGGCtt < 1:15488345/35‑1 (MQ=255) cGTGGTTTTACACGGCTTTTTTTTGTATAGGCttt > 1:17037885/1‑34 (MQ=255) cGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTc < 1:9503300/35‑1 (MQ=255) cGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTc < 1:14564397/35‑1 (MQ=255) cGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTc < 1:1050177/35‑1 (MQ=255) cGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTc < 1:17306902/35‑1 (MQ=255) gTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCa < 1:11408050/35‑1 (MQ=255) gTGGTTTTACACGGCTTTTTTTTGTAAAAGCtttt > 1:7785696/1‑33 (MQ=25) tGGTTTTACACGGCTTTTTTTTGTATAGGCtttcg > 1:10079857/1‑32 (MQ=255) tGGTTTTACACGGCTTTTTTTTGTATAGGCTTTAg > 1:11924700/1‑35 (MQ=255) tGGTTTTACACGGCTTTTTTTTGTATAGGCTTTAg > 1:246930/1‑35 (MQ=255) tGGTTTTACACGGCTTTTTTTTGTATAGGCTTTAg > 1:15367226/1‑35 (MQ=255) tGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAg < 1:6143224/35‑1 (MQ=255) tGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAg < 1:5973511/35‑1 (MQ=255) tGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAg < 1:13544995/35‑1 (MQ=255) tGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAg < 1:18556608/35‑1 (MQ=255) ggTTTTACACGGCTTTTTTTTGTATAGGCTTCAGt < 1:5144445/35‑1 (MQ=255) gTTTTACACGGCTTTTTTTTGTATAGGATTCAGTa < 1:2886895/35‑1 (MQ=255) ttttACACGGCTTTTTTTTGTATAGGCTTCAGTAt < 1:3900723/35‑1 (MQ=255) tACACGGCTTTTTTTTGTATAGGCTTTAGTATTcc > 1:19959518/1‑35 (MQ=255) tACACGGCTTTTTTTTGTATAGGCTTCAGTATTcc < 1:7654536/35‑1 (MQ=255) acacGGCTTTTTTTTGTATAGGCTTTAGTATTCCt > 1:19116242/1‑35 (MQ=255) acGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGa < 1:14997052/35‑1 (MQ=255) acGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGa < 1:9874816/35‑1 (MQ=255) cGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAg < 1:17887331/35‑1 (MQ=255) cGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAg < 1:4035014/35‑1 (MQ=255) GGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGt > 1:3505078‑M1/1‑35 (MQ=255) | GCTTTATAAGGTCAGGTATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGT > REL606/197645‑197713 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |