New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 924276 =93 (0.910)10 (0.100) 3/46 NT 12.3% coding (714/1431 nt) ybjT conserved protein with NAD(P)‑binding Rossmann‑fold domain
?REL606 = 1365457 53 (0.540)coding (824/978 nt) pspF DNA‑binding transcriptional activator

GTAAGCGCCGCTGGTTGATCCCCATCCCCCTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/924310‑924276
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTGCCGCTGGATTTACGTGAGTTTCAGATGCAGCA  <  REL606/1365457‑1365424
                                                                     
GTAAGCGCCGCTGGTTGATCCCCATCCCCCTCCCC                                    >  1:19633346/1‑35
GTAAGCGCCGCTGGTTGATCCCCATCCCCCTCCCC                                    <  1:4914665/35‑1
GTAAGCGCCGCTGGTTGATCCCCATCCCCCTCCCC                                    >  1:1588350/1‑35
GTAAGCGCCGCTGGTTGATCCCCATCCCCCTCCCC                                    >  1:16012349/1‑35
                         CCCCCCCCCCTGCCGCTGGATTTACGTGAGTTTCA           <  1:6868658/35‑1
                         CCCCCCCCCCTGCCGCTGGATTTACGTGAGTTTCA           <  1:13459544/35‑1
                         CCCCCACCCCTGCCGCTGGATTTACGTGAGTTTCA           <  1:5440217/35‑1
                          CCCCCCCCCTGCCGCTGGATTTACGTGAGTTTCAG          <  1:1292494/35‑1
                          CCCCCCCCCTGCCGCTGGATTTACGTGAGTTTCAG          <  1:14561847/35‑1
                           CCCCCCCCTGCCGCTGGATTTACGTGAGTTTCAGA         <  1:11728680/35‑1
                           CCCCCCCCTGCCGCTGGATTTACGTGAGTTTCAGA         <  1:13058951/35‑1
                           CCCCCCCCTGCCGCTGGATTTACGTGAGTTTCAGA         <  1:19073614/35‑1
                           CCCCCCCCTGCCGCTGGATTTACGTGAGTTTCAGA         <  1:4453917/35‑1
                           CCCACCCCTGCCGCTGGATTTACGTGAGTTTCAGA         <  1:16147306/35‑1
                            cccCCCCTGCCGCTGGATTTACGTGAGTTTCAGAT        <  1:2650634/32‑1
                            cccCCCCTGCCGCTGGATTTACGTGAGTTTCAGAT        <  1:3821133/32‑1
                            cccCCCCTGCCGCTGGATTTACGTGAGTTTCAGAT        <  1:14119579/32‑1
                            cacCCCCTGCCGCTGGATTTACGTGAGTTTCAGAT        <  1:14353894/32‑1
                             ccCCCCTGCCGCTGGATTTACGTGAGTTTCAGATG       <  1:8147442/33‑1
                              cCCCCTGCCGCTGGATTTACGTGAGTTTCAGATGC      <  1:2511394/34‑1
                              cCCCCTGCCGCTGGATTTACGTGAGTTTCAGATGC      <  1:4379610/34‑1
                              cCCCCTGCCGCTGGATTTACGTGAGTTTCAGATGC      <  1:6607796/34‑1
                               CCCCTGCCGCTGGATTTACGTGAGTTTCAGATGta     <  1:4813469/35‑3
                               CCCCCGCCGCTGGATTTACGTGAGTTTCAGATGCA     <  1:1329955/35‑1
                                CCCTGCCGCTGGATTTACGTGAGTTTCAGATGCAN    <  1:5885744/35‑1
                                CCCTGCCGCTGGATTTACGTGAGTTTCAGATGCAG    <  1:4242041/35‑1
                                 CCTGCCGCTGGATTTACGTGAGTTTCAGATGCAGC   <  1:16704328/35‑1
                                 CCTGCCGCTGGATTTACGTGAGTTTCAGATGCAGC   <  1:10567469/35‑1
                                  CTGCCGCTTGATTTACGTGAGTTTCAGATGCAGCA  >  1:17865781/1‑35
                                  CTGCCGCTGGATTTACGTGAGTTTCAGATGCAGCA  >  1:2105873/1‑35
                                  CTGCCGCTGGATTTACGTGAGTTTCAGATGCAGCA  >  1:14795874/1‑35
                                  CTGCCGCTGGATTTACGTGAGTTTCAGATGCAGCA  >  1:6517882/1‑35
                                  CTGCCGCTGGATTTACGTGAGTTTCAGATGCAGCA  >  1:11181858/1‑35
                                                                     
GTAAGCGCCGCTGGTTGATCCCCATCCCCCTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/924310‑924276
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTGCCGCTGGATTTACGTGAGTTTCAGATGCAGCA  <  REL606/1365457‑1365424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.