New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 304063893 (0.910)11 (0.140) 3/38 NT 14.8% coding (649/810 nt) pppA bifunctional prepilin leader peptidase/ methylase
?REL606 4567447 = 53 (0.650)coding (1808/2151 nt) yjiY predicted inner membrane protein

Only 100 of 140 total aligned reads displayed.

CGCCCAGGTGGTGCAGATAAGCAGCCATACAGCCGGAACAACAGTTACCCAGATGTATTGGGTGCGCTT  >  REL606/4567413‑4567481
                                  |                                  
 gcCCAGGTGGTGCAGATAAGCAGCCATACAGCCgt                                   >  1:1068151/1‑34 (MQ=255)
 gcCCAGGTGGTGCAGATAAGCAGCCATACAGCCgg                                   >  1:12654589/1‑35 (MQ=255)
   ccAGGTGGTGCAGATAAGCAGCCATACAGCCggga                                 >  1:4121242/1‑33 (MQ=255)
   ccAGGTGGTGCAGATAAGCAGCCATACAGCCGGaa                                 >  1:14272449/1‑35 (MQ=255)
   ccAGGTGGTGCAGATAAGCAGCCATAAAGCCGGaa                                 >  1:7710148/1‑35 (MQ=255)
   ccAGGTGGGGCAGATAAGCAGCCATACAGCCGGaa                                 >  1:10018213/1‑35 (MQ=255)
    cAGGTGGTGCAGATAAGCAGCCGTACAGCCGGaac                                >  1:3549123/1‑35 (MQ=255)
    cAGGTGGTGCAGATAAGCAGCCATACAGCCGGaac                                >  1:8121655/1‑35 (MQ=255)
    cAGGTGGTGCAGATAAGCAGCCATACAGCCGGaac                                >  1:18016559/1‑35 (MQ=255)
    cAGGTGGTGCAGATAAGCAGCCATACAGCCGGaac                                >  1:8208183/1‑35 (MQ=255)
    cAGGTGGTGCAGATAAGCAGCCATACAGCCGGaac                                >  1:9438217/1‑35 (MQ=255)
     aGGTGGTGCAGATAAGCAGCCATACAGCCGGaaca                               >  1:4446219/1‑35 (MQ=255)
     aGGTGGTGCAGATAAGCAGCCATACAGCCGGaaca                               >  1:5932120/1‑35 (MQ=255)
     aGGTGGTGCAGATAAGCAGCCATACAGCCGGaaca                               >  1:14390080/1‑35 (MQ=255)
       gtggtgCAGATAAGCAGCCATACAGCCGGagcaac                             >  1:13053417/1‑35 (MQ=255)
       gtggtgCAGATAAGCAGCCATACAGCCGGaacaac                             >  1:15513746/1‑35 (MQ=255)
         ggtgCAGATAAGCAGCCATACAGCCGGAACAACAg                           >  1:19934759/1‑35 (MQ=255)
         ggtgCAGATAAGCAGCCATACAGCCGGAACAACAg                           >  1:19710066/1‑35 (MQ=255)
          gtgCAGATAAGCAGCCATACAGCCGGAACAACAGt                          >  1:4132090/1‑35 (MQ=255)
           tgCAGATAAGCAGCCATACAGCCGGAACAACAGtt                         >  1:7705011/1‑35 (MQ=255)
           tgCAGATAAGCAGCCATACAGCCGGAACAACAGtt                         >  1:17438717/1‑35 (MQ=255)
           tgCAGATAAGCAGCCATACAGCCGGAACAACAGtt                         >  1:20151430/1‑35 (MQ=255)
            gCAGATAAGCAGCCATACAGCCGGAACAACAGTTa                        >  1:20100606/1‑35 (MQ=255)
            gCAGATAAGCAGCCATACAGCCGGAACAACAGTTa                        >  1:2712544/1‑35 (MQ=255)
            gCAGATAAGCAGCCATACAGCCGGAACAACAGTTa                        >  1:15098426/1‑35 (MQ=255)
            gCAGATAAGCAGCCATACAGCCGGAACAACAGTTa                        >  1:10371687/1‑35 (MQ=255)
            gCAGATAAGCAGCCATACAGCCGGAACAACAGTTa                        >  1:9417778/1‑35 (MQ=255)
             cAGATAAGCATCCATACAGCCGGAACAACAGTTAc                       >  1:8756168/1‑35 (MQ=255)
             cAGATAAGCAGCCATACAGCCGGAACAACAGTTAc                       >  1:14138415/1‑35 (MQ=255)
              aGATAAGCAGCCATACAGCCGGAACAACAGTTAcc                      >  1:5463914/1‑35 (MQ=255)
              aGATAAGCAGCCATACAGCCGGAACAACAGTTAcc                      >  1:7398894/1‑35 (MQ=255)
               gATAAGCAGCCATACAGCCGGAACAACAGTTAccc                     >  1:3815941/1‑35 (MQ=255)
               gATAAGCAGCCATACAGCCGGAACAACAGTTAccc                     >  1:16096217/1‑35 (MQ=255)
               gATAAGCAGCCATACAGCCGGAACAACAGTTAccc                     >  1:16244567/1‑35 (MQ=255)
                aTAAGCAGCCATACAGCCGGAACAACAGTTACCCa                    >  1:2585523/1‑35 (MQ=255)
                aTAAGCAGCCATACAGCCGGAACAACAGTTACCCa                    >  1:18436255/1‑35 (MQ=255)
                aTAAGCAGCCATACAGCCGGAACAACAGTTACCCa                    >  1:1731102/1‑35 (MQ=255)
                aTAAGCAGCCATACAGCCGGAACAACAGTTACCCa                    >  1:8343498/1‑35 (MQ=255)
                aTAAGCAGCCATACAGCCGGAACAACAGTTACCCa                    >  1:15628750/1‑35 (MQ=255)
                 tAAGCAGCCATACAGCCGGAACAACAGTTACCCAg                   >  1:3476294/1‑35 (MQ=255)
                  aaGCAGCCATACAGCCGGAACAACAGTTACCCAGa                  >  1:3269957/1‑35 (MQ=255)
                  aaGCAGCCATACAGCCGGAACAACAGTTACCCAGa                  >  1:10518710/1‑35 (MQ=255)
                  aaGCAGCCATACAGCCGGAACAACAGTTACCCAGa                  >  1:14333969/1‑35 (MQ=255)
                  aaGCAGCCATACAGCCGGAACAACAGTTACCCAGa                  >  1:14068663/1‑35 (MQ=255)
                  aaGCAGCCATACAGCCGGAACAACAGTTACCCAGa                  >  1:17332779/1‑35 (MQ=255)
                   agcagcCATACAGCCGGAACAACAGTTACCCAGAt                 >  1:6679484/1‑35 (MQ=255)
                   agcagcCATACAGCCGGAACAACAGTTACCCAGAt                 >  1:11227175/1‑35 (MQ=255)
                    gcagcCATACAGCCGGAACAACAGTTACCCAGATg                >  1:9158187/1‑35 (MQ=255)
                    ccacccacccagccGGAACAACAGTTACCCAGATg                <  1:10956590‑M2/21‑1 (MQ=255)
                     cccccgcccagccGGAACAACAGTTACCCAGATGt               <  1:5289687‑M2/22‑1 (MQ=255)
                     cccccacccagccGGAACAACAGTTACCCAGATGt               <  1:187896‑M2/22‑1 (MQ=255)
                     cagcCATACAGCCGGAACAACAGTTACCCAGATGt               >  1:14865607/1‑35 (MQ=255)
                     cagcCATACAGCCGGAACAACAGTTACCCAGATGt               >  1:11655172/1‑35 (MQ=255)
                     cagcCATACAGCCGGAACAACAGCTACCCAGATGt               >  1:15522453/1‑35 (MQ=255)
                     cacccacccagccGGAACAACAGTTACCCAGATGt               <  1:5220360‑M2/22‑1 (MQ=255)
                     cacccacccagccGGAACAACAGTTACCCAGATGt               <  1:17550392‑M2/22‑1 (MQ=255)
                      gcccatccagccGGAACAACAGTTACCCAGATGTa              <  1:18790681‑M2/23‑1 (MQ=255)
                      agccacccagccGGAACAACAGTTACCCAGATGTa              <  1:19533533‑M2/23‑1 (MQ=255)
                      acccccccagccGGAACAACAGTTACCCAGATGTa              <  1:13013277‑M2/23‑1 (MQ=255)
                       gcCATACAGCCGGAACAACAGTTACCCAGATGTAt             >  1:5932099/1‑35 (MQ=255)
                       gcCATACAGCCGGAACAACAGTTACCCAGATGTAt             >  1:3391657/1‑35 (MQ=255)
                       cccccccagccGGAACAACAGTTACCCAGATGTAt             <  1:11014267‑M2/24‑1 (MQ=255)
                       cccacccagccGGAACAACAGTTACCCAGATGTAt             <  1:15161398‑M2/24‑1 (MQ=255)
                       cccacccagccGGAACAACAGTTACCCAGATGTAt             <  1:17217790‑M2/24‑1 (MQ=255)
                        ccacccagccGGAACAACAGTTACCCAGATGTAtt            <  1:18266741‑M2/25‑1 (MQ=255)
                        ccATACAGCCTGAACAACAGTTACCCAGATGTAtt            >  1:5602961/1‑35 (MQ=255)
                        ccATACAGCCGGAACAACAGTTACCCAGATGTAtt            >  1:4329641/1‑35 (MQ=255)
                        ccATACAGCCGGAACAACAGTTACCCAGATGTAtt            >  1:7190957/1‑35 (MQ=255)
                         tgcccagccGGAACAACAGTTACCCAGATGTATTg           <  1:9235084‑M2/26‑1 (MQ=255)
                         cATACAGCCGGAACAACAGTTACCCAGATGTATTg           >  1:7191454/1‑35 (MQ=255)
                          acccagccGGAACAACAGTTACCCAGATGTATTgg          <  1:12326781‑M2/27‑1 (MQ=255)
                          aTACAGCCGGAACAACAGTTACCCAGATGTATTgg          >  1:9870320/1‑35 (MQ=255)
                           tACAGCCGGAACAACAGTTACCCAGATGTATTggg         >  1:4404846/1‑35 (MQ=255)
                           cccagccGGAACAACAGTTACCCAGATGTATTggg         <  1:11440962‑M2/28‑1 (MQ=255)
                           cccagccGGAACAACAGTTACCCAGATGTATTggg         <  1:17993111‑M2/28‑1 (MQ=255)
                            ccagccGGAACAACAGTTACCCAGATGTATTGGGt        <  1:8729975‑M2/29‑1 (MQ=255)
                            ccagccGGAACAACAGTTACCCAGATGTATTGGGt        <  1:9791203‑M2/29‑1 (MQ=255)
                            ccagccGGAACAACAGTTACCCAGATGTATTGGGt        <  1:308512‑M2/29‑1 (MQ=255)
                            aCAGCCGGAACAACAGTTACCCAGATGTATTGGGt        >  1:20460446/1‑35 (MQ=255)
                             cagccGGAACAACAGTTACCCAGATGTATTGGGTg       <  1:8503302‑M2/30‑1 (MQ=255)
                             cagccGGAACAACAGTTACACAGATGTATTGGGTg       <  1:11602959‑M2/30‑1 (MQ=255)
                              agccGGAACAACAGTTACCCAGATGTATTGGGTgc      <  1:11074648‑M2/31‑1 (MQ=255)
                              agccGGAACAACAGTTACCCAGATGTATTGGGTgc      <  1:8811065‑M2/31‑1 (MQ=255)
                              agccGGAACAACAGTTACCCAGATGTATTGGGTgc      <  1:10861550‑M2/31‑1 (MQ=255)
                               gccGGAACAACAGTTACCCAGATGTATTGGGTgcg     <  1:9228813‑M2/32‑1 (MQ=255)
                               gccGGAACAACAGTTACCCAGATGTATTGGGTgcg     >  1:13317056‑M2/4‑35 (MQ=255)
                               gccGGAACAACAGTTACCCAGATGTATTGGGTgcg     >  1:10207181‑M2/4‑35 (MQ=255)
                               gccGGAACAACAGTTACCCAGATGTATTGGGTgcg     >  1:5760437‑M2/4‑35 (MQ=255)
                                ccGGAACAACAGTTACCCAGATGTATTGGGTgcgc    >  1:8571920‑M2/3‑35 (MQ=255)
                                ccGGAACAACAGTTACCCAGATGTATTGGGTgcgc    <  1:15765030‑M2/33‑1 (MQ=255)
                                ccGGAACAACAGTTACCCAGATGTATTGGGTgcgc    <  1:15829767‑M2/33‑1 (MQ=255)
                                ccGGAACAACAGTTACCCAGATGTATTGGGTgcgc    <  1:10869296‑M2/33‑1 (MQ=255)
                                 cGGAACAACAGTTACCCAGATGTATTGGGTGCGCt   >  1:10389870‑M2/2‑35 (MQ=255)
                                 cGGAACAACAGTTACCCAGATGTATTGGGTGCGCt   >  1:7274518‑M2/2‑35 (MQ=255)
                                 cGGAACAACAGTTACCCAGATGTATTGGGTGCGCt   <  1:19330989‑M2/34‑1 (MQ=255)
                                 cGGAACAACAGTTACCCAGATGTATTGGGTGCGCt   >  1:3350689‑M2/2‑35 (MQ=255)
                                  ggAGCAACAGTTACCCAGATGTATTGGGTGCGCtt  <  1:17926198/35‑1 (MQ=255)
                                  ggAACAACAGTTACCCAGATGTATTGGGTGCGCtt  <  1:7351111/35‑1 (MQ=255)
                                  ggAACAACAGTTACCCAGATGTATTGGGTGCGCtt  <  1:6812566/35‑1 (MQ=255)
                                  ggAACAACAGTTACCCAGATGTATTGGGTGCGCtt  >  1:6657178/1‑35 (MQ=255)
                                  |                                  
CGCCCAGGTGGTGCAGATAAGCAGCCATACAGCCGGAACAACAGTTACCCAGATGTATTGGGTGCGCTT  >  REL606/4567413‑4567481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.