New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 580467 =60 (0.580)4 (0.050) 3/36 NT 9.1% coding (851/3144 nt) cusA copper/silver efflux system, membrane component
?REL606 2397842 = 35 (0.450)coding (824/2646 nt) yfcTU predicted outer membrane export usher protein

Only 100 of 138 total aligned reads displayed.

CGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCAAA  >  REL606/580433‑580501
                                  |                                  
tcaattccgatattttcgacggttttaactatgtt                                    >  1:14827794‑M1/35‑35 (MQ=255)
tcaattccgatattttcgacggttttaactatgtt                                    >  1:10649585‑M1/35‑35 (MQ=255)
tcaattccgatattttcgacggttttaactatgtt                                    <  1:4434164‑M1/1‑1 (MQ=255)
cGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGt                                    <  1:14685970/35‑1 (MQ=255)
cGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGt                                    <  1:7401311/35‑1 (MQ=255)
cGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGt                                    <  1:9496246/35‑1 (MQ=255)
cGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGt                                    <  1:9367899/35‑1 (MQ=255)
 ggggCATTGCCGAACTAAACGGCGAAGGGGACGTg                                   >  1:6278624/1‑35 (MQ=37)
 ggggCATTGCCGAACTAAACGGCGAAGGCGAAGTg                                   <  1:14873063/35‑1 (MQ=255)
 ggggCATTGCCGAACTAAACGGCGAAGGCGAAGTg                                   <  1:8607671/35‑1 (MQ=255)
 caattccgatattttcgacggttttaactatgtTg                                   >  1:8158755‑M1/34‑35 (MQ=255)
 caattccgatattttcgacggttttaactatgtTg                                   <  1:10952186‑M1/2‑1 (MQ=255)
  gggCATTGCCGAACTAAACGGCGAAGGCGAAGTgg                                  >  1:1583229/1‑35 (MQ=255)
  gggCATTGCCGAACTAAACGGCGAAGGCGAAGTgg                                  <  1:5648314/35‑1 (MQ=255)
  gggCATTGCCGAACTAAACGGCGAAGGCGAAGTgg                                  >  1:4700307/1‑35 (MQ=255)
  gggCATTGCCGAACTAAACGGCGAAGGCGAAGTgg                                  <  1:3389376/35‑1 (MQ=255)
  gggCATTGCCGAACTAAACGGCGAAGGCGAAGCgg                                  >  1:12212553/1‑35 (MQ=255)
  aattccgatattttcgacggttttaactatgtTgg                                  <  1:5341684‑M1/3‑1 (MQ=255)
  aattccgatattttcgacggttttaactatgtTgg                                  <  1:13104962‑M1/3‑1 (MQ=255)
  aattccgatattttcgacggttttaactatgtTgg                                  >  1:10044970‑M1/33‑35 (MQ=255)
   ggCATTGCCGAACTAAACGGCGAAGGCGAAGTggc                                 <  1:20032900/35‑1 (MQ=255)
   ggCATTGCCGAACTAAACGGCGAAGGCGAAGTggc                                 >  1:10798876/1‑35 (MQ=255)
   ggCATTGCCGAACTAAACGGCGAAGGCGAAGTggc                                 <  1:1270229/35‑1 (MQ=255)
   ggCATTGCCGAACTAAACGGCGAAGGCGAAGGggc                                 >  1:3211911/1‑35 (MQ=255)
   attccgatattttcgacggttttaactatgtTggc                                 <  1:2083010‑M1/4‑1 (MQ=255)
   attccgatattttcgacggttttaactatgtTggc                                 <  1:11588542‑M1/4‑1 (MQ=255)
    ttccgatattttcgacggttttaactatgttgggg                                <  1:1763156‑M1/5‑3 (MQ=255)
    ttccgatattttcgacggttttaactatgttgggg                                <  1:16420977‑M1/5‑3 (MQ=255)
    ttccgatattttcgacggttttaactatgtTtgcg                                <  1:15435461‑M1/5‑1 (MQ=255)
    ttccgatattttcgacggttttaactatgtTggcg                                >  1:1807149‑M1/31‑35 (MQ=255)
    ttccgatattttcgacggttttaactatgtTggcg                                >  1:13698770‑M1/31‑35 (MQ=255)
    ttccgatattttcgacggttttaactatgtTggcg                                >  1:16882893‑M1/31‑35 (MQ=255)
    ttccgatattttcgacgggtttaactatgtTggcg                                <  1:7302064‑M1/5‑1 (MQ=255)
    gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg                                <  1:15283653/35‑1 (MQ=255)
    gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg                                <  1:14363059/35‑1 (MQ=255)
    gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg                                >  1:4163290/1‑35 (MQ=255)
    gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg                                >  1:4169277/1‑35 (MQ=255)
    gCATTGCCGAACTAAACGGCGAAGGCGAAGCgggg                                >  1:15176647/1‑33 (MQ=37)
     tccgatattttcgacggttttaactatgttggctg                               <  1:19218733‑M1/6‑3 (MQ=255)
     tccgatattttcgacggttttaactatgtTggcgg                               >  1:14031450‑M1/30‑35 (MQ=255)
     tccgatattttcgacggttttaactatgtTggcgg                               <  1:8319998‑M1/6‑1 (MQ=255)
     tccgatattttcgacggttttaactatgtTggcgg                               <  1:16677934‑M1/6‑1 (MQ=255)
     cATTGCCGAACTAAACGGCGAAGGCGAAGTggcgg                               >  1:10691906/1‑35 (MQ=255)
     cATTGCCGAACTAAACGGCGAAGGCGAAGTggcgg                               >  1:11062038/1‑35 (MQ=255)
     cATTGCCGAACTAAACGGCGAAGGCGAAGTggcgg                               <  1:12297684/35‑1 (MQ=255)
      ccgatattttcgacggttttaactatgtTggcggg                              <  1:5060415‑M1/7‑1 (MQ=255)
      ccgatattttcgacggttttaactatgtTggcggg                              <  1:18799099‑M1/7‑1 (MQ=255)
      ccgatattttcgacggttttaactatgtTggcggg                              <  1:19379034‑M1/7‑1 (MQ=255)
      aTTGCCGAACTAAACGGCGAAGGCGAAGTgggggg                              >  1:2473563/1‑35 (MQ=255)
      aTTGCCGAACTAAACGGCGAAGGCGAAGTggcggg                              <  1:19349813/35‑1 (MQ=255)
      aTTGCCGAACTAAACGGCGAAGGCGAAGAggcggg                              >  1:19078372/1‑35 (MQ=255)
       ttGCCGAACTAAACGGCGAAGGCGAAGTggcgggc                             <  1:20432073/35‑1 (MQ=255)
       ttGCCGAACTAAACGGCGAAGGCGAAGCggcgggg                             >  1:10164171/1‑34 (MQ=255)
       cgatattttcgacggttttaactatgttggcggga                             <  1:9571015‑M1/8‑2 (MQ=255)
       cgatattttcgacggttttaactatgttggcggga                             <  1:13138839‑M1/8‑2 (MQ=255)
       cgatattttcgacggttttaactatgtTggcgggc                             <  1:4594204‑M1/8‑1 (MQ=255)
       cgatattttcgacggttttaactatgtTggcgggc                             <  1:18022228‑M1/8‑1 (MQ=255)
         gCCGAACTAAACGGCGAAGGCGAAGTGgcgggcgg                           <  1:13407157/35‑1 (MQ=255)
         gCCGAACTAAACGGCGAAGGCGAAGTGgcgggcgg                           <  1:11495420/35‑1 (MQ=255)
          ccGAACTAAACGGCGAAGGCGAAGGGGcggggggg                          >  1:6626821/1‑35 (MQ=37)
          ccGAACTAAACGGAGAAGGCGAAGTGGcgggcggg                          <  1:12723045/35‑1 (MQ=255)
           cGAACTAAACGGCGAAGGCGAAGTGGCGGGGgggg                         >  1:17416978/1‑35 (MQ=255)
           cGAACTAAACGGCGAAGGCGAAGTGGCGGGCgggg                         <  1:386748/35‑1 (MQ=255)
           attttcgacggttttaactatgtTGGCGGGCgggg                         <  1:8046866‑M1/12‑1 (MQ=255)
            ttttcgacggttttaactatgtTGGCGGGGGGggt                        <  1:18321347‑M1/13‑1 (MQ=255)
            ttttcgacggttttaactatgtTGGCGGGCGGggt                        <  1:3422707‑M1/13‑1 (MQ=255)
            gAACTAAACGGCGAAGGCGTAGTGGCGGGCGGggt                        <  1:3097896/35‑1 (MQ=255)
            gAACTAAACGGCGAAGGCGAAGTGGCGGGGggggg                        >  1:17964919/1‑34 (MQ=255)
            gAACTAAACGGCGAAGGCGAAGTGGCGGGGggggg                        >  1:4176988/1‑34 (MQ=255)
            gAACTAAACGGCGAAGGCGAAGTGGCGGGCGGggt                        <  1:5941210/35‑1 (MQ=255)
             tttcgacggttttaactatgtTGGCGGGCGGggtg                       <  1:4438622‑M1/14‑1 (MQ=255)
               cTAAACGGCGAAGGTGAAGTGGCGGGCGGggtggt                     <  1:5960865/35‑1 (MQ=255)
                tAAACGGCGAAGGCGAAGTGGCGGGCGGggtggtc                    <  1:11942700/35‑2 (MQ=255)
                tAAACGGCGAAGGCGAAGTGGCGGGCGGGgtggtg                    <  1:15287797/35‑1 (MQ=255)
                 aaaCGGCGAAGGCGAAGTGGCGGGGGGgggggggg                   >  1:6380372/1‑32 (MQ=25)
                 aaaCGGCGAAGGCGAAGTGGCGGGGGGgggggggg                   >  1:8155634/1‑32 (MQ=25)
                 aaaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGa                   <  1:4465531/35‑1 (MQ=255)
                 aaaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGa                   <  1:6766226/35‑1 (MQ=255)
                  aaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGAt                  <  1:8423719/35‑1 (MQ=255)
                  aaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGAt                  <  1:17959683/35‑1 (MQ=255)
                   aCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATc                 <  1:4994051/35‑1 (MQ=255)
                     tgcgaaggcgaagTGGCGGGCGGGGTGGTGATCCt               <  1:3334441/34‑1 (MQ=255)
                     ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt               <  1:16872517/35‑1 (MQ=255)
                     ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt               <  1:3569013/35‑1 (MQ=255)
                     ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt               <  1:328195/35‑1 (MQ=255)
                     ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt               <  1:19303425/35‑1 (MQ=255)
                      gcgaaggcgaagTGGCGGGCGGGGTGGTGATCCTg              <  1:5191645/35‑1 (MQ=255)
                        gaaggcgaagTGGCGGGCGGGGTGGTGATCCTGCg            <  1:17522561/35‑1 (MQ=255)
                        gaaggcgaagTGGCGGGCGGGGTGGTGATCCTGCg            <  1:6497288/35‑1 (MQ=255)
                            gcgaagTGGCGGGCGGGGTGGTGATCCTGCGATcc        <  1:10607013/35‑1 (MQ=255)
                            gcgaagTGGCGGGCGGGGTGGTGATCCTGCGATcc        <  1:20162658/35‑1 (MQ=255)
                             cgaagTGGCGGGCGGGGTGGTGATCCTGCGATCCg       <  1:14031774/35‑1 (MQ=255)
                             cgaagTGGCGGGCGGGGTGGTGATCCTGCGATCCg       <  1:7234013/35‑1 (MQ=255)
                             cgaagTGGCGGGCGGGGTGGTGATCCTGCGATCCg       <  1:1014189/35‑1 (MQ=255)
                              gaagTGGCGGGCGGGGTGGTGATCCTGCGATCCgg      <  1:17173489/35‑1 (MQ=255)
                              gaagTGGCGGGCGGGGTGGTGATCCTGCGATCCgg      <  1:1803933/35‑1 (MQ=255)
                               aagTGGCGGGCGGGGTGGTGATCCTGCGATCCGGc     <  1:4573/35‑1 (MQ=255)
                                agTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCa    <  1:8580248/35‑1 (MQ=255)
                                agTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCa    <  1:18252069/35‑1 (MQ=255)
                                  TGGCGGGCGGGGTGGTGATCCTGCGATCCGGCaaa  >  1:17308442‑M1/1‑35 (MQ=255)
                                  |                                  
CGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCAAA  >  REL606/580433‑580501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.