Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,201,958 | A→C | 46.0% | L201R (CTC→CGC) | iclR ← | DNA‑binding transcriptional repressor |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,201,958 | 0 | A→C | 46.0% | 211.3 ‑0.3 ‑0.0 | 133 | L201R (CTC→CGC) | iclR | DNA‑binding transcriptional repressor |
Reads supporting (aligned to +/- strand): new base (32/29): ref base (41/31): total (73/60) | ||||||||||
Fisher's exact test strand distribution p-value = 7.27e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.50e-01 |
Only 100 of 152 total aligned reads displayed.
GTCAAATGAATAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGGAGACACCAGCGT > REL606/4201924‑4201992 | tCAAATGAATAACCCCGTTTGCGCGTTTGGGCgag < 1:5684603/35‑1 (MQ=255) tCAAATGAATAACCCCGTTTGCGCGTTTGGGCgag > 1:15673927/1‑35 (MQ=255) cAAATGAATAACCCCGTTTGCGCGTTTGGGCgcga < 1:3160130/35‑1 (MQ=255) cAAATGAATAACCCCGTTTGCGCGTTTGGGCgcga > 1:5526516/1‑35 (MQ=255) cAAATGAATAACCCCGTTTGCGCGTTTGGGCgaga < 1:947416/35‑1 (MQ=255) aaaTGAATAACCCCGTTTGCGCGTTTGGGCGCGAt < 1:8044341/35‑1 (MQ=255) aaaTGAATAACCCCGTTTGCGCGTTTGGGCGAGAt > 1:2187013/1‑35 (MQ=255) aaaTGAATAACACCGTTTGCGCGTTTGGGCGAGAt < 1:15101514/35‑1 (MQ=255) aaTGAATAACCCCGTTTGCGCGTTTGGGCGCGAtc < 1:10689155/35‑1 (MQ=255) aaTGAATAACCCCGTTTGCGCGTTTGGGCGCGAtc < 1:1034932/35‑1 (MQ=255) aaTGAATAACCCCGTTTGCGCGTTTGGGCGCGAtc < 1:16070638/35‑1 (MQ=255) aaTGAATAACCCCGTTTGCGCGTTTGGGCGAGAtc > 1:10048042/1‑35 (MQ=255) aaTGAATAACCCCGTTTGCGCGTTTGGGCGAGAtc > 1:9113656/1‑35 (MQ=255) aaTGAATAACCCCGTTTGCGCGTTTGGGCGAGAtc > 1:17696101/1‑35 (MQ=255) aTGAATAACCCCGTTTGCGCGTTTGGGCGCGAtct > 1:8435685/1‑35 (MQ=255) aTGAATAACCCCGTTTGCGCGTTTGGGCGCGAtct < 1:11171509/35‑1 (MQ=255) aTGAATAACCCCGTTTGCGCGTTTGGGCGCGAtct > 1:3177339/1‑35 (MQ=255) aTGAATAACCCCGTTTGCGCGTTTGGGCGCGAtct < 1:2434270/35‑1 (MQ=255) aTGAATAACCCCGTTTGCGCGTTTGGGCGAGAtct < 1:12790254/35‑1 (MQ=255) tGAATAACCCCGTTTGCGCGTTTGGGCGAGAtctt > 1:7074421/1‑35 (MQ=255) tGAATAACCCCGTTTGCGCGTTTGGGCGAGAtctt > 1:15128884/1‑35 (MQ=255) tGAATAACCCCGTTTGCGCGTTTGGGCGAGAtctt < 1:6786283/35‑1 (MQ=255) gAATAACCCCGTTTGCGCGTTTGGGCGCGAtcttc > 1:18379802/1‑35 (MQ=255) gAATAACCCCGTTTGCGCGTTTGGGCGCGAtcttc > 1:13846931/1‑35 (MQ=255) gAATAACCCCGTTTGCGCGTTTGGGCGCGAtcttc > 1:14597167/1‑35 (MQ=255) gAATAACCCCGTTTGCGCGTTTGGGCGCGAtcttc > 1:11061163/1‑35 (MQ=255) gAATAACCCCGTTTGCGCGTTTGGGCGCGAtcttc > 1:10036781/1‑35 (MQ=255) aaTAACCCCGTTTGCGCGTTTGGGCGCGAtcttct < 1:13079143/35‑1 (MQ=255) aaTAACCCCGTTTGCGCGTTTGGGCGCGAtcttct > 1:5172734/1‑35 (MQ=255) aaTAACCCCGTTTGCGCGTTTGGGCGAGAtcttct < 1:15836529/35‑1 (MQ=255) aaTAACCCCGTTTGCGCGTTTGGGCGAGAtcttct > 1:15522906/1‑35 (MQ=255) aaTAACCCCGTTTGCGCGTTTGGGCGAGAtcttct > 1:5116902/1‑35 (MQ=255) aaTAACCCCGTTTGCGCGTTTGGGCGAGAtcttct > 1:8599398/1‑35 (MQ=255) aTAACCCCGTTTGCGCGTTTGGGCGCGATcttctt < 1:16020841/35‑1 (MQ=255) aTAACCCCGTTTGCGCGTTTGGGCGAGATcttctt < 1:12111116/35‑1 (MQ=255) aTAACCCCGTTTGCGCGTTTGGGCGAGATcttctt < 1:6286701/35‑1 (MQ=255) tAACCCCGTTTGCGCGTTTGGGCGCGATCTTCttt > 1:13244049/1‑35 (MQ=255) tAACCCCGTTTGCGCGTTTGGGCGCGATCTTCttt > 1:12355215/1‑35 (MQ=255) tAACCCCGTTTGCGCGTTTGGGCGAGATCTTCttt > 1:1218911/1‑35 (MQ=255) aaCCCCGTTTGCGCGTTTGGGCGCGATCTTCtttt > 1:7638852/1‑35 (MQ=255) aCCCCGTTTGCGCGTTTGGGCGCGATCTTCTTTTa < 1:11948566/35‑1 (MQ=255) aCCCCGTTTGCGCGTTTGGGCGCGATCTTCTTTTa > 1:19057303/1‑35 (MQ=255) aCCCCGTTTGCGCGTTTGGGCGCGATCTTCTTTTa < 1:15426810/35‑1 (MQ=255) aCCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTa < 1:2809617/35‑1 (MQ=255) aCCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTa < 1:14633335/35‑1 (MQ=255) ccccGTTTGCGCGTTTGGGCGAGATCTTCTTTTaa < 1:19222562/35‑1 (MQ=255) ccccGTTTGCGCGTTTGGGCGAGATCTTCTTTTaa < 1:13214902/35‑1 (MQ=255) ccccGTTTGCGCGTTTGGGCGAGATCTTCTTTTaa < 1:10122924/35‑1 (MQ=255) cccGTTTGCGCGTTTGGGCGCGATCTTCTTTTaaa < 1:15561512/35‑1 (MQ=255) cccGTTTGCGCGTTTGGGCGCGATCTTCTTTTaaa > 1:2117423/1‑35 (MQ=255) cccGTTTGCGCGTTTGGGCGCGATCTTCTTTTaaa > 1:8160230/1‑35 (MQ=255) cccGTTTGCGCGTTTGGGCGAGATCTTCTTTTaaa > 1:12687738/1‑35 (MQ=255) ccGTTTGCGCGTTTGGGCGCGATCTTCTTTTAAAt < 1:7815583/35‑1 (MQ=255) ccGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAAt > 1:3234412/1‑35 (MQ=255) cGTTTGCGCGTTTGTGCGAGATCTTCTTTTAAATg > 1:3459739/1‑35 (MQ=255) cGTTTGCGCGTTTGGGCGCGATCTTCTTTTAAATg > 1:12351479/1‑35 (MQ=255) cGTTTGCGCGTTTGGGCGCGATCTTCTTTTAAATg > 1:2255679/1‑35 (MQ=255) gTTTGCGCGTTTGGGCGCGATCTTCTTTTAAATGc < 1:5405813/35‑1 (MQ=255) gTTTGCGCGTTTGGGCGCGATCTTCTTTTAAATGc > 1:9917047/1‑35 (MQ=255) gTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGc < 1:1042310/35‑1 (MQ=255) gTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGc > 1:874126/1‑35 (MQ=255) gTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGc > 1:7049551/1‑35 (MQ=255) tttGCGCGTTTGGGCGCGATCTTCTTTTAAATGca > 1:2735986/1‑35 (MQ=255) tttGCGCGTTTGGGCGCGATCTTCTTTTAAATGca > 1:17824136/1‑35 (MQ=255) tttGCGCGTTTGGGCGATATCTTCTTTTAAATGca > 1:15457166/1‑35 (MQ=255) tttGCGCGTTTGGGCGAGATCTTCTTTTAAATGca < 1:16647893/35‑1 (MQ=255) tttGCGCGTTTGGGCGAGATCTTCTTTTAAATGca < 1:6968567/35‑1 (MQ=255) tttGCGCGTTTGGGCGAGATCTTCTTTTAAATGca > 1:11733822/1‑35 (MQ=255) tttGCGCGTTTGGGCGAGATCTTCTTTTAAATGca < 1:10613577/35‑1 (MQ=255) ttGCGCGTTTGGGCGCGATCTTCTTTTAAATGcac > 1:5374833/1‑35 (MQ=255) ttGCGCGTTTGGGCGCGATCTTCTTTTAAATGcac < 1:17160965/35‑1 (MQ=255) ttGCGCGTTTGGGCGAGATCTTCTTTTAAATGcac > 1:18890490/1‑35 (MQ=255) tGCGCGTTTGGGCGCGATCTTCTTTTAAATGcaca < 1:20125693/35‑1 (MQ=255) tGCGCGTTTGGGCGAGATCTTCTTTTAAATGcaca < 1:1979289/35‑1 (MQ=255) gcgcGTTTGGGCGCGATCTTCTTTTAAATGCACAg < 1:11984852/35‑1 (MQ=255) cgcgTTTGGGCGAGATCTTCTTTTAAATGCACAgg < 1:7978130/35‑1 (MQ=255) cgcgTTTGGGCGAGATCTTCTTTTAAATGCACAgg < 1:3019349/35‑1 (MQ=255) gcgTTTGGGCGCGATCTTCTTTTAAATGCACAGga > 1:787036/1‑35 (MQ=255) gcgTTTGGGCGAGATCTTCTTTTAAATGCACAGga > 1:10918727/1‑35 (MQ=255) cgTTTGGGCGAGATCTTCTTTTAAATGCACAGgag > 1:102531/1‑35 (MQ=255) gTTTGGGCGCGATCTTCTTTTAAATGCACAGgaga < 1:8280885/35‑1 (MQ=255) gTTTGGGCGCGATCTTCTTTTAAATGCACAGgaga > 1:4042418/1‑35 (MQ=255) gTTTGGGCGAGATCTTCTTTTAAATGCACAGgaga > 1:9644467/1‑35 (MQ=255) gTTTGGGCGAGATCTTCTTTTAAATGCACAGgaga > 1:8907933/1‑35 (MQ=255) gTTTGGGCGAGATCTTCTTTTAAATGCACAGgaga > 1:6533552/1‑35 (MQ=255) tttGGGCGCGATCTTCTTTTAAATGCACAGTAGac > 1:163663/1‑35 (MQ=38) tttGGGCGCGATCTTCTTTTAAATGCACAGGAGac > 1:9405700/1‑35 (MQ=255) tttGGGCGAGATCTTCTTTTAAACGCACAGGAGac > 1:3166400/1‑35 (MQ=255) ttGGGCGCGATCTTCTTTTAAATGCACAGGAGaca < 1:7962023/35‑1 (MQ=255) gggCGAGATCTTCTTTTAAATGCACAGGAGACAcc > 1:16906553/1‑35 (MQ=255) gggCGAGACCTTCTTTTAAATGCACAGGAGACAcc < 1:4680940/35‑1 (MQ=255) gCGCGATCTTCTTTTAAATGCACAGGAGACACCAg > 1:10912628/1‑35 (MQ=255) gCGCGATCTTCTTTTAAATGCACAGGAGACACCAg < 1:9213498/35‑1 (MQ=255) gCGAGATCTTCTTTTAAATGCACAGGAGACACCAg > 1:11728469/1‑35 (MQ=255) gCGAGATCTTCTTTTAAATGCACAGGAGACACCAg < 1:2961272/35‑1 (MQ=255) gCGAGATCTTCTTTTAAATGCACAGGAGACACCAg < 1:5997777/35‑1 (MQ=255) cGAGATCTTCTTTTAAATGCACAGGAGACACCAGc < 1:3493636/35‑1 (MQ=255) gagaTCTTCTTTTAAATGCACAGGAGACACCAGCg < 1:13751806/35‑1 (MQ=255) gagaTCTTCTTTTAAATGCACAGGAGACACCAGCg < 1:7369989/35‑1 (MQ=255) agaTCTTCTTTTAAATGCACAGGAGACACCAGCGt < 1:18314952/35‑1 (MQ=255) | GTCAAATGAATAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGGAGACACCAGCGT > REL606/4201924‑4201992 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |