New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 331092177 (0.750)8 (0.110) 3/34 NT 15.0% coding (824/1068 nt) degS serine endoprotease, periplasmic
?REL606 4603001 = 36 (0.490)coding (287/780 nt) yjjV predicted DNase

Only 100 of 134 total aligned reads displayed.

CTGGAAAGGCGTCCGGCGAAGGTGGTGGCGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGACGATCCG  >  REL606/4602967‑4603035
                                  |                                  
gctagatcgcaccactgcacgcacagagcggtggg                                    >  1:3494836‑M2/35‑35 (MQ=255)
gcgagatcgcaccactgcacgcacagagcggtggg                                    >  1:13177332‑M2/35‑35 (MQ=255)
cTGGAAAGGCGTCCGGCGAAGGTGGTGGCGGGggg                                    >  1:19107417/1‑35 (MQ=255)
cTGGAAAGGCGTCCGGCGAAGGTGGTGGCGGGggg                                    >  1:15963607/1‑35 (MQ=255)
 tGGAAAGGCGTCCGGCGAAGGTGGTGGCGGTgggn                                   <  1:14369719/35‑1 (MQ=255)
 tGGAAAGGCGTCCGGCGAAGGTGGTGGCGGTgggg                                   <  1:19543446/35‑1 (MQ=255)
 tGGAAAGGCGTCCGGCGAAGGTGGTGGCGGTgggg                                   <  1:20344894/35‑1 (MQ=255)
 tGGAAAGGCGTCCGGCGAAGGTGGTGGCGGGgggg                                   >  1:8449922/1‑35 (MQ=255)
 tGGAAAGGCGTCCGGCGAAGGTGGCGGCGGGgggg                                   >  1:17021445/1‑35 (MQ=37)
 cgagatcgcaccactgcacgcacagagcggtgggg                                   >  1:3848001‑M2/34‑35 (MQ=255)
 cgagatcgcaccactgcacgcacagagcggtgggg                                   >  1:20425053‑M2/34‑35 (MQ=255)
 cgagatcgcaccactgcacgcacagagcggtgggg                                   >  1:6531210‑M2/34‑35 (MQ=255)
 cgagatcgcaccactgcacgcacagagcggtgggg                                   >  1:1393830‑M2/34‑35 (MQ=255)
  ggAAAGGCGTCCGGCGAAGGTGGTGGCGGTggggg                                  <  1:11849950/35‑1 (MQ=255)
  ggAAAGGCGTCCGGCGAAGGTGGTGGCGGGggggg                                  >  1:3046141/1‑35 (MQ=255)
  ggAAAGGCGTCCGGCGAAGGTGGTGGCGGGggggg                                  >  1:9409046/1‑35 (MQ=255)
  gagatcgcaccactgcacgcacagagcggtggggt                                  >  1:318886‑M2/33‑34 (MQ=255)
  gagatcgcaccactgcacgcacagagcggtggggt                                  >  1:2155901‑M2/33‑34 (MQ=255)
  gagatcgcaccactgcacgcacagagcggtggggg                                  >  1:14453017‑M2/33‑35 (MQ=255)
   gAAAGGCGTCCGGCGAAGGTGGTGGCGGTGGGGga                                 <  1:19669093/35‑1 (MQ=255)
   gAAAGGCGTCCGGCGAAGGTGGTGGCGGGgggggg                                 >  1:17700354/1‑34 (MQ=255)
   gAAAGGCGTCCGGCGAAGGTGGTGGCGGGgggggg                                 >  1:8113485/1‑34 (MQ=255)
   gAAAGGCGTCCGGCGAAGGTGGTGGCGGGgggggg                                 >  1:13976668/1‑34 (MQ=255)
   agatcgcaccactgcacgcacagagcggtggggtc                                 >  1:8604518‑M2/32‑33 (MQ=255)
   agatcgcaccactgcacgcacagagcggtggggta                                 >  1:4172561‑M2/32‑33 (MQ=255)
    gatcgcaccactgcacgcacagagcggtggggtat                                >  1:8811627‑M2/31‑32 (MQ=255)
    gatcgcaccactgcacgcacagagcggtggggccc                                >  1:18632016‑M2/31‑32 (MQ=255)
    gatcgcaccactgcacgcacagagcggtggGGtag                                >  1:5295713‑M2/31‑35 (MQ=255)
    gatcgcaccactgcacgcacagagcggtggGGtag                                >  1:17451229‑M2/31‑35 (MQ=255)
    aaaGGCGTCCGGCGAATGTGGTGGCGGGggggggg                                >  1:674749/1‑33 (MQ=25)
    aaaGGCGTCCGGCGAAGGTGGTGGCGGTGGGGgag                                <  1:1860072/35‑1 (MQ=255)
     atcgcaccactgcacgcacagagcggtggGggagg                               >  1:4472139‑M2/30‑34 (MQ=255)
     atcgcaccactgcacgcacagagcggtggGGgaga                               >  1:14187439‑M2/30‑35 (MQ=255)
     aaGGCGTCCGGCGAAGGTGGTGGCGGTGGGGgaga                               <  1:17362679/35‑1 (MQ=255)
     aaGGCGTCCGGCGAAGGTGGTGGCGGGgggggggg                               >  1:11119547/1‑32 (MQ=25)
      tcgcaccactgcacgcacatagcggtggGGGAGAt                              >  1:16464277‑M2/29‑35 (MQ=255)
      tcgcaccactgcacgcacagagcggtggGGGAGAt                              >  1:4171119‑M2/29‑35 (MQ=255)
      aGGCGTCCGGCGAAGGTGGTGGCGGTGGGGGAGAt                              <  1:7374509/35‑1 (MQ=255)
      aGGCGTCCGGCGAAGGTGGTGGCGGTGGGGGAGAt                              <  1:7791771/35‑1 (MQ=255)
       ggCGTCCGGCGAAGGTGGTGGCGGTGGGGGAGATc                             <  1:19716839/35‑1 (MQ=255)
       cgcaccactgcacgcacagagcggtggGGTAGATc                             >  1:7283460‑M2/28‑35 (MQ=255)
       cgcaccactgcacgcacagagcggtggGGGAGATc                             >  1:7308086‑M2/28‑35 (MQ=255)
         cGTCCGGCGAAGGTGGTGGCGGTGGGGGAGATCgg                           <  1:16931553/35‑1 (MQ=255)
         cGTCCGGCGAAGGTGGTGGCGGTGGGGGAGATCgg                           <  1:5387158/35‑1 (MQ=255)
          gTCCGGCGAAGGTGGTGGCGGTGGGGGAGATCGGt                          <  1:4848495/35‑1 (MQ=255)
           tcgggCGAAGGTGGTGGCGGTGGGGGAGATCGGTc                         <  1:2512280/32‑1 (MQ=255)
           tCCGGCGAAGGTGGTGGCGGTGGGGGAGATCGGTc                         <  1:18015557/35‑1 (MQ=255)
            ccGGCGAAGGTGGTGGCGGTGGGGGAGATCGGTCt                        <  1:347260/35‑1 (MQ=255)
            ccGGCGAAGGTGGTGGCGGTGGGGGAGATCGGTCt                        <  1:6214694/35‑1 (MQ=255)
             cGGCGAAGGTGGTGGCGGTGGGGGAGATCGGTCTg                       <  1:3773344/35‑1 (MQ=255)
              ggCGAAGGTGGTGGCGGTGGGGGAGATCGGTCTgg                      <  1:10657205/35‑1 (MQ=255)
               gCGAAGGTGGTGGCGGTGGGGGAGATCGGTCTGGa                     <  1:15491641/35‑1 (MQ=255)
               gCGAAGGTGGTGGCGGTGGGGGAGATCGGTCTGGa                     <  1:11011818/35‑1 (MQ=255)
                 gAAGGTGGTGGCGGTGGGGGAGATCGGTCTGGAtc                   <  1:15164971/35‑1 (MQ=255)
                  aaGGTGGTGGCGGTGGGGGAGATCGGTCTGGAtct                  <  1:4184163/35‑1 (MQ=255)
                  aaGGTGGTGGCGGTGGGGGAGATCGGTCTGGAtct                  <  1:10362175/35‑1 (MQ=255)
                  aaGGTGGTGGCGGTGGGGGAGATCGGTCTGGAtct                  <  1:14352743/35‑1 (MQ=255)
                  aaGGTGGTGGCGGTGGGGGAGATCGGTCTGGAtct                  <  1:14793806/35‑1 (MQ=255)
                    ggtggtGGCGGTGGGGGAGATCGGTCTGGATctct                <  1:7308667/35‑1 (MQ=255)
                    ggtggtGGCGGTGGGGGAGATCGGTCTGGATctct                <  1:17183890/35‑1 (MQ=255)
                     gtggtgGCGGTGGGGGAGATCGGTCTGGATCTCtt               <  1:9534947/35‑1 (MQ=255)
                     gtggtgGCGGTGGGGGAGATCGGTCTGGATCTCtt               <  1:1243045/35‑1 (MQ=255)
                     gtggtgGCGGTGGGGGAGATCGGTCTGGATCTCtt               <  1:1338075/35‑1 (MQ=255)
                     gtggtgGCGGTGGGGGAGATCGGTCTGGATCTCtt               <  1:14680428/35‑1 (MQ=255)
                     gtggtgGCGGTGGGGGAGATCGGTCTGGATCTCtt               <  1:5871345/35‑1 (MQ=255)
                      tggtggCGGTGGGGGAGATCGGTCTGGATCTCttt              <  1:14701539/35‑1 (MQ=255)
                      tggtggCGGTGGGGGAGATCGGTCTGGATCTCttt              <  1:15031882/35‑1 (MQ=255)
                       ggtggCGGTGGGGGAGATCGGTCTGGATCTCTTTg             <  1:9758543/35‑1 (MQ=255)
                       ggtggCGGTGGGGGAGATCGGTCTGGATCTCTTTg             <  1:7934103/35‑1 (MQ=255)
                        gtggCGGTGGGGGAGATCGGTCTGGATCTCTTTgg            <  1:11241051/35‑1 (MQ=255)
                         tggCGGTGGGGGAGATCGGTCTGGATCTCTTTGGc           <  1:15007143/35‑1 (MQ=255)
                         tggCGGTGGGGGAGATCGGTCTGGATCTCTTTGGc           <  1:6079628/35‑1 (MQ=255)
                         tggCGGTGGGGGAGATCGGTCTGGATCTCTTTGGc           <  1:13537285/35‑1 (MQ=255)
                          ggCGGTGGGGGAGATCGGTCTGGATCTCTTTGGcg          <  1:2629998/35‑1 (MQ=255)
                          ggCGGTGGGGGAGATCGGTCTGGATCTCTTTGGcg          <  1:7703537/35‑1 (MQ=255)
                          ggCGGTGGGGGAGATCGGTCTGGATCTCTTTGGcg          <  1:11970024/35‑1 (MQ=255)
                           gcggtggGGGAGATCGGTCTGGATCTCTTTGGcga         <  1:4416061‑M2/28‑1 (MQ=255)
                           gcggtggGGGAGATCGGTCTGGATCTCTTTGGcga         >  1:4960205‑M2/8‑35 (MQ=255)
                           gcggtggGGGAGATCGGTCTGGATCTCTTTGGcga         <  1:7444084‑M2/28‑1 (MQ=255)
                           gcggtggGGGAGATCGGTCTGGATCTCTTTGGcga         <  1:5546286‑M2/28‑1 (MQ=255)
                           gccgtggGGGAGATCGGTCTGGATCTCTTTGGcga         <  1:1307703‑M2/28‑1 (MQ=255)
                             ggtggGGGAGATCGGTCTGGATCTCTTTGGcgacg       <  1:14099307‑M2/30‑1 (MQ=255)
                             ggtggGGGAGATCGGTCTGGATCTCTTTGGcgacg       <  1:18024013‑M2/30‑1 (MQ=255)
                             ggtggGGGAGATCGGTCTGGATCTCTTTGGcgacg       <  1:13274254‑M2/30‑1 (MQ=255)
                              gtgtGGGAGATCGGTCTGGATCTCTTTGGcgacga      >  1:18349812‑M2/5‑35 (MQ=255)
                              gtggGGGAGATCGGTCTGGATCTCTTTGGcgacga      >  1:19591123‑M2/5‑35 (MQ=255)
                              gtggGGGAGATCGGTCTGGATCTCTTTGGcgacga      <  1:15287085‑M2/31‑1 (MQ=255)
                               tggGGGAGATCGGTCTGTATCTCTTTGGCGACGAt     >  1:8540497‑M2/4‑35 (MQ=255)
                               tggGGGAGATCGGTCTGGATCTCTTTGGCGACGAt     <  1:10611201‑M2/32‑1 (MQ=255)
                                ggGGGAGATCGGTCTGGATCTCTTTGGCGACGATc    >  1:915197‑M2/3‑35 (MQ=255)
                                ggGGGAGATCGGTCTGGATCTCTTTGGCGACGATc    >  1:6848534‑M2/3‑35 (MQ=255)
                                ggGGGAGATCGGTCTGGATCTCTTTGGCGACGATc    >  1:16633455‑M2/3‑35 (MQ=255)
                                ggGGGAGATCGGTCTGGATCTCTTTGGCGACGATc    >  1:4464402‑M2/3‑35 (MQ=255)
                                ggGGGAGATCGGTATGGATCTCTTTGGCGACGATc    >  1:3518159‑M2/3‑35 (MQ=255)
                                 gGGGAGATCGGTCTGGATCTCTTTGGCGACGATcc   >  1:18051980‑M2/2‑35 (MQ=255)
                                 gGGGAGATCGGTCTGGATCTCTTTGGCGACGATcc   >  1:14712836‑M2/2‑35 (MQ=255)
                                 gGGGAGATCGGTCTGGATCTCTTTGGCGACGATcc   <  1:4708660‑M2/34‑1 (MQ=255)
                                 gGGGAGATCGGTCTGGATCTCTTTGGCGACGATcc   >  1:3187240‑M2/2‑35 (MQ=255)
                                  gggAGATCGGTCTGGATCTCTTTGGCGACGATCCg  >  1:4019222/1‑35 (MQ=255)
                                  gggAGATCGGTCTGGATCTCTTTGGCGACGATCCg  >  1:20366441/1‑35 (MQ=255)
                                  |                                  
CTGGAAAGGCGTCCGGCGAAGGTGGTGGCGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGACGATCCG  >  REL606/4602967‑4603035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.