New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 118158088 (0.860)8 (0.100) 3/38 NT 11.2% coding (919/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase
?REL606 2872317 = 57 (0.700)coding (1204/1263 nt) lysA diaminopimelate decarboxylase, PLP‑binding

ACCAGCTGGTGGTGGAACCGACGCTGCAAACCACCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1181542‑1181580
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgCCTGACCATTATCAAACAGAACTTCTGGTAACAG  >  REL606/2872317‑2872350
                                                                         
ACCAGCTGGTGGTGGAACCGACGCTGCAAACCACC                                        >  1:9441096/1‑35
 CCAGCTGGTGGTGGAACCGACGCTGCAAACCACCC                                       >  1:13377883/1‑35
 CCAGCTGGTGGTGGAACCGACGCTGCAAACAACCC                                       >  1:16103753/1‑35
   AGCTGGTGGTGGAACCGACGCTGCAAACCACCCcc                                     >  1:9779363/1‑33
                       ggGCAAACCACCCGCGCCTGACCATTATCAAACAG                 <  1:6532756/33‑1
                        gGCAAACCACCCGCGCCTGACCATTATCAAACAGA                <  1:3833212/34‑1
                        gGCAAAACACCCGCGCCTGACCATTATCAAACAGA                <  1:1353760/34‑1
                         gcgAACCACCCGCGCCTGACCATTATCAAACAGAA               <  1:5035346/32‑1
                         caAAACCACCCGCGCCTGACCATTATCAAACAGAA               <  1:17137696/33‑1
                         GCAAACCACCCGCGCCTGACCATTATCAAACAGAA               <  1:3101063/35‑1
                          CAAACCACCCGCGCCTGACCATTATCAAACAGAAC              <  1:4663460/35‑1
                            AACCCCCCGCGCCTGACCATTATCAAACAGAACTT            <  1:8564641/35‑1
                             ACCACCCGCGCCTGACCATTATCAAACAGAACTTC           <  1:17970523/35‑1
                              tCACCCGCGCCTGACCATTATCAAACAGAACTTCT          <  1:12173202/34‑1
                              aCACCCGCGCCTGACCATTATCAAACAGAACTTCT          <  1:8931517/34‑1
                              aCACCCGCGCCTGACCATTATCAAACAGAACTTCT          <  1:20313675/34‑1
                              CCACCCGCGCCTGACCATTATCAAACAGAACTTCT          <  1:10148562/35‑1
                               CACCCGCGCCTGACCATTATCAAACAGAACTTCTG         <  1:3665170/35‑1
                               CACCCGCGCCTGACCATTATCAAACAGAACTTCTG         <  1:15791783/35‑1
                                ACCCGCGCCTGACCATTATCAAACAGAACTTCTGG        <  1:10546972/35‑1
                                ACCCGCGCCTGACCATTATCAAACAGAACTTCTGG        <  1:17719599/35‑1
                                 CCCGCGCCTGACCATTATCAAACAGAACTTCTGGT       <  1:8525138/35‑1
                                 CCCGCGCCTGACCATTATCAAACAGAACTTCTGGT       <  1:4962095/35‑1
                                 CCCGCGCCTGACCATTATCAAACAGAACTTCTGGT       <  1:19308749/35‑1
                                 CCCGCGCCTGACCATTATCAAACAGAAATTCTGGT       <  1:8561052/35‑1
                                  CCGCGCCTGACCATTATCAAACAGAACTTCTGGTA      <  1:17786542/35‑1
                                  CCGCGCCTGACCATTATCAAACAGAACTTCTGGTA      <  1:13268672/35‑1
                                  CCGCGCCTGACCATTATCAAACAGAACTTCTGGTA      <  1:8862396/35‑1
                                   CGCGCCTGACCATTATCAAACAGAACTTCTGGTAA     <  1:19777637/35‑1
                                   CGCGCCTGACCATTATCAAACAGAACTTCTGGTAA     >  1:6323340/1‑35
                                    GCGCCTGACCATTATCAAACAGAACTTCTGGTAAC    >  1:3395688/1‑35
                                    GCGCCTGACCATTATCAAACAGAACTTCTGGTAAC    <  1:10687953/35‑1
                                    GCGCCTGACCATTATCAAACAGAACTTCTGGTAAC    >  1:12120814/1‑35
                                     CGCCTGACCATTATCAAACAGAACTTCTGGTAACA   <  1:17954251/35‑1
                                     CGCCTGACCATTATCAAACAGAACTTCTGGTAACA   <  1:949267/35‑1
                                     CGCCTGACCATTATCAAACAGAACTTCTGGTAACA   >  1:9441348/1‑35
                                     CGCCTGACCATTATCAAACAGAACTTCTGGTAACA   >  1:7817113/1‑35
                                     CGCCTGACCATTATCAAACAGAACTTCTGGTAACA   >  1:15295502/1‑35
                                     CGCCTGACCATTATCAAACAGAACTTCTGGTAACA   >  1:19370389/1‑35
                                      GCCTGACCATTATCAAACAGAACTTCTGGTAACAG  >  1:18618698/1‑35
                                      GCCTGACCATTATCAAACAGAACTTCTGGTAACAG  <  1:15494417/35‑1
                                      GCCTGACCATTATCAAACAGAACTTCTGGTAACAG  >  1:15706322/1‑35
                                      GCCTGACCATTATCAAACAGAACTTCTGGTAACAG  >  1:2719616/1‑35
                                                                         
ACCAGCTGGTGGTGGAACCGACGCTGCAAACCACCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1181542‑1181580
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgCCTGACCATTATCAAACAGAACTTCTGGTAACAG  >  REL606/2872317‑2872350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.