New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1924962 =56 (0.540)10 (0.100) 4/48 NT 12.3% intergenic (‑216/‑59) ruvA/yebB Holliday junction DNA helicase motor protein/hypothetical protein
?REL606 = 2078183 86 (0.840)coding (1712/3306 nt) yegE predicted diguanylate cyclase, GGDEF domain signalling protein

AAAATTTATTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1924975‑1924962
‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCGCCATATCAATACAGACCACGGCTTCACC  <  REL606/2078183‑2078152
                                              
AAAATTTATTTTTTTTCGCCATATCAATACAGACC             <  1:3755659/35‑1
  AATTTATTTTTTTTCGCCATATCAATACAGACCAC           <  1:19771840/35‑1
   gTTTATTTTTTTTCGCCATATCAATACAGACCACG          <  1:10485714/34‑1
    gTTATTTTTTTTCGCCATATCAATACAGACCACGG         <  1:4708753/34‑1
      TATTTTTTTTCGCCATATCAATACAGACCACGGCT       <  1:14398271/35‑1
       tTTTTTTTTCGCCATATCAATACAGACCACGGCTT      <  1:11169321/34‑1
        TTTTTTTTCGCCATATCAATACAGACCACGGCTTC     <  1:14781394/35‑1
        TTTTTTTTCGCCATATCAATACAGACCACGGCTTC     <  1:18501860/35‑1
        TTTTTTTTCGCCATATCAATACAGACCACGGCTTC     <  1:4540234/35‑1
        TTTTTTTTCGCCATATCAATACAGACCACGGCTTC     <  1:9870383/35‑1
         TTTTTTTCGCCATATCAATACAGACCACGGCTTCA    <  1:18675770/35‑1
          TTTTTTCGCCATATCAATACAGACCACGGCTTCAC   <  1:8758845/35‑1
           TTTTTCGCCATATCAATACAGACCACGGCTTCACC  <  1:14541309/35‑1
           TTTTTCGCCATATCAATACAGACCACGGCTTCACC  <  1:17291426/35‑1
                                              
AAAATTTATTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1924975‑1924962
‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCGCCATATCAATACAGACCACGGCTTCACC  <  REL606/2078183‑2078152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.