New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2312280 =75 (0.730)5 (0.050) 3/44 NT 9.1% intergenic (‑147/‑143) ais/yfbE hypothetical protein/uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent
?REL606 = 4042610 31 (0.330)intergenic (‑57/+10) yshA/yihO predicted outer membrane porin L/predited transporter

TAGACGTAAATATTGAAATTTTTATATTTTTTCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2312315‑2312280
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCC  <  REL606/4042610‑4042577
                                                                      
TAGACGTAAATATTGAAATTTTTATATTTTTTCTT                                     <  1:4853201/35‑1
                  TTTTTATATTTTTTTTTAGCCGCTATTTCCATCCT                   <  1:2680590/35‑1
                         tTTTTTTTTTAGCCGCTATTTCCATCCTGGTGGGT            <  1:8886485/34‑1
                          TTTTTTTTTAGCCGCTATTTCCATCCTGGTGGGTG           <  1:7749188/35‑1
                          TTTTTTTTTAGCCGCTATTTCCATCCTGGTGGGTG           <  1:17227563/35‑1
                           TTTTTTTTAGCCGCTATTTCCATCCTGGTGGGTGG          <  1:13869675/35‑1
                                tTTAGCCGCTATTTCCATCCTGGTGGGTGGCGGCC     <  1:14195482/34‑1
                                tTTAGCCGCTATTTCCATCCTGGTGGGTGGCGGCC     <  1:1902604/34‑1
                                 TTAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCT    <  1:9857231/35‑1
                                 TTAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCT    <  1:15372953/35‑1
                                 TTAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCT    <  1:13918176/35‑1
                                  TAGCCGCTATTTCCATCCTGGTGGGTGGCGGGCTC   >  1:3580627/1‑35
                                  TAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTC   <  1:17172086/35‑1
                                  TAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTC   <  1:772473/35‑1
                                  TAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTC   >  1:8122389/1‑35
                                  TAGCCGCTATTTCCATCCTGGTGGGTGGCGGCATC   <  1:3986566/35‑1
                                  TAGCCGCTATTTCCATACTGGTGGGTGGCGGCCTC   <  1:4657701/35‑1
                                   AGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCC  <  1:19414125/35‑1
                                   AGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCC  >  1:6664507/1‑35
                                   AGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCC  <  1:7491178/35‑1
                                   AGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCC  >  1:14129374/1‑35
                                                                      
TAGACGTAAATATTGAAATTTTTATATTTTTTCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2312315‑2312280
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCC  <  REL606/4042610‑4042577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.