New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 28073259 (0.570)9 (0.120) 3/36 NT 14.3% coding (170/636 nt) yagZ hypothetical protein
?REL606 3006460 = 64 (0.830)coding (470/819 nt) yafZ conserved protein

Only 100 of 127 total aligned reads displayed.

CTACCGAGTGGCGTCACAACCAGCTTACTGGTGGTGTCTTTTTTGGCTGTTGCCGACCAGGTCGCTAC  >  REL606/280699‑280766
                                 |                                  
cTACCGAGTGGCGTCACAACCAGCTTACTggtggt                                   <  1:15557380/35‑1 (MQ=255)
cTACCGAGTGGCGTCACAACCAGCTTACTGGTGGg                                   >  1:8935544‑M1/1‑34 (MQ=255)
cTACCGAGTGGCGTCACAACCAGCTTACTGGTGGg                                   >  1:343667‑M1/1‑34 (MQ=255)
cTACCGAGTGGCGTCACAACCAGCTTACTGGTGGg                                   >  1:17894568‑M1/1‑34 (MQ=255)
 tACCGAGTGGCGTCACAACCAGCTTACTGttggtg                                  >  1:1653336/1‑35 (MQ=255)
 tACCGAGTGGCGTCACAACCAGCTTACTGgtggtg                                  <  1:14723796/35‑1 (MQ=255)
 tACCGAGTGGCGTCACAACCAGCTTACTGgtggtg                                  <  1:7810971/35‑1 (MQ=255)
 tACCGAGTGGCGTCACAACCAGCTTACTGgtggtg                                  <  1:4230438/35‑1 (MQ=255)
 tACCGAGTGGCGTCACAACCAGCTTACTGgtggtg                                  <  1:19122560/35‑1 (MQ=255)
  aCCGAGTGGCGTCACAACCAGCTTACTGGTGgtgt                                 <  1:19867269/35‑1 (MQ=255)
  aCCGAGTGGCGTCACAACCAGCTTACTGGTGGggt                                 >  1:16570351‑M1/1‑32 (MQ=255)
   ccGAGTGGCGTCACAACCAGCTTACTGGTGGTGTc                                <  1:7426596/35‑1 (MQ=255)
    cGAGTGGCGTCACAACCAGCTTACTGGTGGgggtt                               >  1:2537491‑M1/1‑30 (MQ=255)
    cGAGTGGCGTCACAACCAGCTTACTGGTGGggggt                               >  1:19407746‑M1/1‑30 (MQ=255)
    cGAGTGGCGTCACAACCAGCTTACTGGTGGggggt                               >  1:8499616‑M1/1‑30 (MQ=255)
    cGAGTGGCGTCACAACCAGCTTACTGGTGGgggct                               >  1:12445509‑M1/1‑30 (MQ=255)
    cGAGTGGCGTCACAACCAGCTTACTGGTGGTGTCt                               <  1:16757731/35‑1 (MQ=255)
    cGAGTGGCGTCACAACCAGCTTACTGGTGGTGTCt                               <  1:5018005/35‑1 (MQ=255)
     gAGTGGCGTCACAACCAGCTTACTGGTGGggggtt                              >  1:9528882‑M1/1‑29 (MQ=255)
     gAGTGGCGTCACAACCAGCTTACTGGTGGgggctt                              >  1:12730413‑M1/1‑29 (MQ=255)
     gAGTGGCGTCACAACCAGCTTACTGGTGGgggctt                              >  1:15050773‑M1/1‑29 (MQ=255)
     gAGTGGCGTCACAACCAGCTTACTGGTGGgggctt                              >  1:20433674‑M1/1‑29 (MQ=255)
     gAGTGGCGTCACAACCAGCTTACTGGTGGGGTCtt                              >  1:6841088/1‑35 (MQ=255)
     gAGTGGCCTCACAACCAGCTTACTGGTGGTGTCtt                              <  1:19159239/35‑1 (MQ=255)
      aGTGGCGTCACAACCAGCTTACTTGTGGTGTCttt                             >  1:3621585/1‑35 (MQ=255)
      aGTGGCGTCACAACCAGCTTACTGGTGGgggtttt                             >  1:3750931‑M1/1‑28 (MQ=255)
      aGTGGCGTCACAACCAGCTTACTGGTGGTGTCttt                             <  1:6287532/35‑1 (MQ=255)
       gTGGCGTCACAACCAGCTTACTGGTGGgggttttt                            >  1:8247623‑M1/1‑27 (MQ=255)
        tGGCGTCACAACCAGCTTACTGGTGGTGTCttttt                           <  1:7654414/35‑1 (MQ=255)
        tGGCGTCACAACCAGCTTACTGGTGGTGTCttttt                           <  1:12778995/35‑1 (MQ=255)
        tGGCGTCACAACCAGCTTACTGGTGGGGNGttttn                           >  1:5882784/1‑34 (MQ=37)
         ggCGTCACAACCAGCTTACTGGTGGTGTCtttttt                          <  1:16773556/35‑1 (MQ=255)
         ggCGTCACAACCAGCTTACTGGTGGTGTCtttttt                          <  1:9433015/35‑1 (MQ=255)
         ggCGTCACAACCAGCTTACTGGTGGGGGCtttttt                          >  1:12988705/1‑35 (MQ=38)
          gCGTCCCAACCAGCTTACTGGTGGTGTCTTTTTTg                         <  1:20445495/35‑1 (MQ=255)
           cGTCCCAACCAGCTTACTGGTGGTGTCTTTTTTgg                        <  1:17868249/35‑1 (MQ=255)
           cGTCACAACCAGCTTACTGGTGGTGTCTTTTTTgg                        <  1:17704005/35‑1 (MQ=255)
           cGTCACAACCAGCTTACTGGTGGTGTCTTTTTTgg                        <  1:13119885/35‑1 (MQ=255)
           cGTCACAACCAGCTTACTGGTGGTGTCTTTTTTgg                        <  1:2635166/35‑1 (MQ=255)
           cGTCACAACCAGCTTACTGGTGGTGTCTTTTTTgg                        <  1:4705730/35‑1 (MQ=255)
           cGTCACAACCAGCTTACTGGTGGTGTCTTTTTTgg                        <  1:15813060/35‑1 (MQ=255)
           cGTCACAACCAGCTTACTGGTGGTGTCTTTTTTgg                        <  1:11952630/35‑1 (MQ=255)
            gTCACAACCAGCTTACTGGTGGTGTCTTTTTTGGc                       <  1:14179959/35‑1 (MQ=255)
              cacaACCAGCTTACTGGTGGTGTCTTTTTTGGCTg                     <  1:9026637/35‑1 (MQ=255)
              cacaACCAGCTTACTGGTGGGGGCTTTTTTTGCTg                     >  1:8159205/1‑35 (MQ=25)
               acaACCAGCGTACTGGTGGTGTCTTTTTTGGCTGt                    <  1:17222384/35‑1 (MQ=255)
                caACCAGCTTACTGGTGGTGTCTTTTTTGGCTGtt                   <  1:12508190/35‑1 (MQ=255)
                caACCAGCTTACTGGTGGTGTCTTTTTTGGCTGtt                   <  1:15903346/35‑1 (MQ=255)
                caACCAGCTTACTGGTGGTGTCTTTTTTGGCTGtt                   <  1:14552235/35‑1 (MQ=255)
                 aaCCAGCTTACTGGTGGTGTCTTTTTTGGCTGTTg                  <  1:10789447/35‑1 (MQ=255)
                 aaCCAGCTTACTGGTGGGGGGTTTTTTTGCTgggg                  >  1:9210412/1‑32 (MQ=12)
                  aCCAGCTTACTGGTGGTGTCTTTTTTGGCTGTTGc                 <  1:19155952/35‑1 (MQ=255)
                   ccAGCTTACTGGTGGTGTCTTTTTTGGCTGTTGcc                <  1:7038442/35‑1 (MQ=255)
                    cAGCTTACTGGTGGTGTCTTTTTTGGCTGTTGCCg               <  1:7348099/35‑1 (MQ=255)
                    cAGCTTACTGGTGGTGTCTTTTTTGGCTGTTGCCg               <  1:1124663/35‑1 (MQ=255)
                    cAGCTTACTGGTGGTGTCTTTTTTGGCTGTTGCCg               <  1:15338962/35‑1 (MQ=255)
                      gCTTACTGGTTGTGTCTTTTTTGGCTGTTGCCGAc             <  1:1898816/35‑1 (MQ=255)
                       cTTACTGGTGGTGTCTTTTTTGGCTGTTGCCGAcc            <  1:19307790/35‑1 (MQ=255)
                        ttACTGGTGGTGTCTTTTTTGGCTGTTGCCGACCa           <  1:13551226/35‑1 (MQ=255)
                        ttACTAGTGGTGTCTTTTTTGGCTGTTGCCGACCa           <  1:6338981/35‑1 (MQ=255)
                         tACTGGTGGTGTCTTTTTTGGCTGTTGCCGACCAg          <  1:1958935/35‑1 (MQ=255)
                         tACTGGTGGTGTCTTTTTTGGCTGTTGCCGACCAg          <  1:3322505/35‑1 (MQ=255)
                         tACTGGTGGTGTCTTTTTTGGCTGTTGCCGACCAg          <  1:16381262/35‑1 (MQ=255)
                           cTGGTGGTGTCTTTTTTGGCTGTTGCCGACCAGGt        <  1:14488385/35‑1 (MQ=255)
                           cTGGTGGTGTCTTTTTTGGCTGTTGCCGACCAGGt        <  1:17199487/35‑1 (MQ=255)
                           cTGGTGGTGTCTTTTTTGGCTGTTGCCGACCAGGt        <  1:12168236/35‑1 (MQ=255)
                            tggtgggggtttttgaccggattgaggaaaagcgt       <  1:13446065‑M1/35‑30 (MQ=255)
                            tggtgggggtttttgaccggattgaggaaaagcgt       <  1:4614025‑M1/35‑30 (MQ=255)
                            tggtgggggtttttgaccggattgaggaaaagcgt       <  1:7710718‑M1/35‑30 (MQ=255)
                            tggtgggggtttttgaccggattgaggaaaagcgt       >  1:9402868‑M1/1‑6 (MQ=255)
                            tggtgggggtttttgaccggattgaggaaaagcgt       >  1:8160195‑M1/1‑6 (MQ=255)
                            tggtggTGTCTTTTTTGGCTGTTGCCGACCAGGTc       <  1:2398310/35‑1 (MQ=255)
                             ggtggtGTCTTTTTTGGCTGTTGCCGACCAGGTCg      <  1:7040130/35‑1 (MQ=255)
                             ggtgggggtttttgacctgattgaggaaaagcgtg      >  1:14868717‑M1/1‑5 (MQ=255)
                             ggtgggggtttttgaccggattgaggaaaagcgtg      <  1:10863333‑M1/35‑31 (MQ=255)
                             ggtgggggtttttgaccggattgaggaaaagcgtg      <  1:500340‑M1/35‑31 (MQ=255)
                             ggtgggggtttttgaccggattgaggaaaagcgtg      >  1:7484719‑M1/1‑5 (MQ=255)
                              gtggtgTCTTTTTTGGCTGTTGCCGACCAGGTCGc     <  1:18589406/35‑1 (MQ=255)
                              gtgggggtttttgaccggattgaggaaaagcgtga     <  1:15654493‑M1/35‑32 (MQ=255)
                              gtgggggtttttgaccggattgaggaaaagcgtga     <  1:10423185‑M1/35‑32 (MQ=255)
                              gtgggggtttttgaccggattgaggaaaagcgtga     <  1:19851596‑M1/35‑32 (MQ=255)
                              gtgggggtttttgaccggattgaggaaaagcgtga     >  1:2827159‑M1/1‑4 (MQ=255)
                               tggtgTCTTTTTTGGCTGTTGCCGACCAGGTCGCt    <  1:4931548/35‑1 (MQ=255)
                               tggtgTCTTTTTTGGCTGTTGCCGACCAGGTCGCt    <  1:7882166/35‑1 (MQ=255)
                               tggtgTCTTTTTTGGCTGTTGCCGACCAGGTCGCt    <  1:7999041/35‑1 (MQ=255)
                               tgggggtttttgaccggattgaggaaaagcgtgat    <  1:16454337‑M1/35‑33 (MQ=255)
                               tgggggtttttgaccggattgaggaaaagcgtgat    <  1:8403665‑M1/35‑33 (MQ=255)
                                ggtgTCTTTTTTGGCTGTTGCCGACCAGGTCGCTa   <  1:1626664/35‑1 (MQ=255)
                                ggtgTCTTTTTTGGCTGTTGCCGACCAGGTCGCTa   <  1:19945546/35‑1 (MQ=255)
                                ggtgTCTTTTTTGGCTGTTGCCGACCAGGTCGCTa   <  1:16749450/35‑1 (MQ=255)
                                gggggtttttgaccggattgaggaaaagcgtgatg   <  1:543694‑M1/35‑34 (MQ=255)
                                gggggtttttgaccggattgaggaaaagcgtgatg   >  1:12141444‑M1/1‑2 (MQ=255)
                                gggggtttttgaccggattgaggaaaagcgtgatg   <  1:4546198‑M1/35‑34 (MQ=255)
                                gggggtttttgaccggattgaggaaaagcgtgatg   >  1:17116813‑M1/1‑2 (MQ=255)
                                gggggtttttgaccggattgaggaaaagcgtgatg   >  1:16758939‑M1/1‑2 (MQ=255)
                                 gtgtCTTTTTTGGCTGTTGCCGACCAGGTCGCTAc  <  1:15975291/35‑1 (MQ=255)
                                 ggggtttttgaccggattgaggaaaagcgtgatgc  >  1:2721627‑M1/1‑1 (MQ=255)
                                 ggggtttttgaccggattgaggaaaagcgtgatgc  <  1:14413294‑M1/35‑35 (MQ=255)
                                 ggggtttttgaccggattgaggaaaagcgtgatgc  >  1:19519135‑M1/1‑1 (MQ=255)
                                 ggggtttttgaccggattgaggaaaaccgtgatgc  >  1:14910801‑M1/1‑1 (MQ=255)
                                 |                                  
CTACCGAGTGGCGTCACAACCAGCTTACTGGTGGTGTCTTTTTTGGCTGTTGCCGACCAGGTCGCTAC  >  REL606/280699‑280766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.