New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 580467 = | 60 (0.580) | 4 (0.050) | 3/36 | NT | 9.1% | coding (851/3144 nt) | cusA | copper/silver efflux system, membrane component |
? | REL606 | 2397842 = | 35 (0.450) | coding (824/2646 nt) | yfcTU | predicted outer membrane export usher protein |
Only 100 of 121 total aligned reads displayed.
AACATTTGATCGTCAGTACTGACACTGCCGCCAACATAGTTAAAACCGTCGAAAATATCGGAATTGAG > REL606/2397809‑2397876 | aaCATTTGATCGTCAGTACTGACACTGCCGCCAAc > 1:3129332/1‑35 (MQ=255) aaCATTTGATCGTCAGTACTGACACTGCCGCCAAc > 1:7593506/1‑35 (MQ=255) aCATTTGATCGTCAGTACTGACACTGCCGCCAACa > 1:7316879/1‑35 (MQ=255) aCATTTGATCGTCAGTACTGACACTGCCGCCAACa > 1:17685362/1‑35 (MQ=255) cATTTGATCGTCAGTACTGACACTGCCGCCAACAt > 1:2739575/1‑35 (MQ=255) aTTTGATCGTCAGTACTGACACTGCCGCCAACATa > 1:15266541/1‑35 (MQ=255) aTTTGATCGTCAGTACTGACACTGCCGCCAACATa > 1:11518432/1‑35 (MQ=255) tttGATCGTCAGTACTGACACTGCCGCCAACATAg > 1:13830290/1‑35 (MQ=255) ttGATCGTCAGTACTGACACTGCCGCCAACATAGt > 1:7220229/1‑35 (MQ=255) tGATCGTCAGTACTGACACTGCCGCCAACATAGtt > 1:10956904/1‑35 (MQ=255) tCGTCAGTACTGACACTGCCGCCAACATAGTTaaa > 1:14787201/1‑35 (MQ=255) cGTCAGTACTGACACTGCCGCCAACATAGTTaaaa > 1:12575215/1‑35 (MQ=255) cGTCAGTACTGACACTGCCGCCAACATAGTTaaaa > 1:12111071/1‑35 (MQ=255) cGTCAGTACTGACACTGCCGCCAACATAGTTaaaa > 1:5971380/1‑35 (MQ=255) cGTCAGTACTGACACTGCCGCCAACATAGTTaaaa > 1:5071619/1‑35 (MQ=255) gTCAGTACTGACACTGCCGCCAACATAGTTAAAAc > 1:20139806/1‑35 (MQ=255) cAGTACTGACACTGCCGCCAACATAGTTAAAACCg > 1:3062244/1‑35 (MQ=255) aGTACTGACACTGCCGCCAACATAGTTAAAACCGt > 1:9032277/1‑35 (MQ=255) gTACTGACACTGCCGCCAACATAGTTAAAACCGTc > 1:16753449/1‑35 (MQ=255) tACTGACACTGCCGCCAACATAGTTAAAACCGTCg > 1:13999407/1‑35 (MQ=255) tACTGACACTGCCGCCAACATAGTTAAAACCGTCg > 1:12267053/1‑35 (MQ=255) aCTGACACTGCCGCCAACATAGTTAAAACCGTCGa > 1:1445542/1‑35 (MQ=255) aCTGACACTGCCGCCAACATAGTTAAAACCGTCGa > 1:15174402/1‑35 (MQ=255) aCTGACACTGCCGCCAACATAGTTAAAACCGTCGa > 1:17919023/1‑35 (MQ=255) aCTGACACTGCCGCCAACATAGTTAAAACCGTCGa > 1:19776811/1‑35 (MQ=255) aCTGACACTGCCGCCAACATAGTTAAAACCGTCGa > 1:12702077/1‑35 (MQ=255) cTGACACTGCCGCCAACATAGTTAAAACCGTCGaa > 1:8845006/1‑35 (MQ=255) cTGACACTGCCGCCAACATAGTTAAAACCGTCGaa > 1:9021889/1‑35 (MQ=255) tGACACTGCCGCCAACATAGTTAAATCCGTCGaaa > 1:1455797/1‑35 (MQ=255) tGACACTGCCGCCAACATAGTTAAAACCGTCGaaa > 1:3693551/1‑35 (MQ=255) tGACACTGCCGCCAACATAGTTAAAACCGTCGaaa > 1:571577/1‑35 (MQ=255) caccccgcccgccaACATAGTTAAAACCGTCGaaa < 1:4438622‑M2/21‑1 (MQ=255) gACACTGCCGCCAACATAGTTAAAACCGTCGaaaa > 1:20366487/1‑35 (MQ=255) gACACTGCCGCCAACATAGTTAAAACCGTCGaaaa > 1:6827176/1‑35 (MQ=255) gACACTGCCGCCAACATAGTTAAAACCGTCGaaaa > 1:16297219/1‑35 (MQ=255) gACACTGCCGCCAACATAGTTAAAACCGTCGaaaa > 1:11735480/1‑35 (MQ=255) gACACTGCCGCCAACATAGTTAAAACCGTCGaaaa > 1:5330310/1‑35 (MQ=255) accccgcccgccaACATAGTTAAAACCGTCGaaaa < 1:3422707‑M2/22‑1 (MQ=255) accccccccgccaACATAGTTAAAACCGTCGaaaa < 1:18321347‑M2/22‑1 (MQ=255) ccccgcccgccaACATAGTTAAAACCGTCGAAAat < 1:8046866‑M2/23‑1 (MQ=255) acacTGCCGCCAACATAGTTAAAACCGTCGAAAat > 1:11957535/1‑35 (MQ=255) acacTGCCGCCAACATAGTTAAAACCGTCGAAAat > 1:2401323/1‑35 (MQ=255) acacTGCCGCCAACATAGTTAAAACCGTCGAAAat > 1:15513280/1‑35 (MQ=255) ctcTGCCGCCAACATAGTTAAAACCGTCGAAAata > 1:2901680/3‑35 (MQ=255) cccTGCCGCAAACATAGTTAAAACCGTCGAAAata < 1:8284210/33‑1 (MQ=38) cacTGCCGCCAACATAGTTAAAACCGTCGAAAata > 1:13454412/1‑35 (MQ=255) cacTGCCGCCAACATAGTTAAAACCGTCGAAAata > 1:13667437/1‑35 (MQ=255) cacTGCCGCCAACATAGTTAAAACCGTCGAAAata > 1:19093148/1‑35 (MQ=255) cacTGCCGCCAACATAGTTAAAACCGCCGAAAata > 1:20073548/1‑35 (MQ=255) acTGCCGCCAACATAGTTAAAACCGTCGAAAatat > 1:3254961/1‑35 (MQ=255) acTGCCGCCAACATAGTTAAAACCGTCGAAAatat > 1:792419/1‑35 (MQ=255) acTGCCGCCAACATAGTTAAAACCGTCGAAAatat > 1:7995099/1‑35 (MQ=255) acTGCCGCCAACATAGTTAAAACCGTCGAAAatat > 1:5726702/1‑35 (MQ=255) acTGCCGCCAACATAGTTAAAACCGTCGAAAatat > 1:14165350/1‑35 (MQ=255) acTGCCGCCAACATAGTTAAAACCGTCGAAAatat > 1:4533341/1‑35 (MQ=255) acTGCCGCCAACATAGTTAAAACCGTCGAAAatat > 1:2246476/1‑35 (MQ=255) ccgccgccAACATAGTTAAAACCGTCGAAAATATc < 1:11286704/33‑1 (MQ=255) ccgccgccAACATAGTTAAAACCGTCGAAAATATc < 1:11045249/33‑1 (MQ=255) cTGCCGCCAACATAGTTAAAACCGTCGAAAATATc > 1:8646669/1‑35 (MQ=255) cTGCCGCCAACATAGTTAAAACCGTCGAAAATATc > 1:1759267/1‑35 (MQ=255) cTGCCGCCAACATAGTTAAAACCGTCGAAAATATc > 1:6666641/1‑35 (MQ=255) cTGCCGCCAACATAGTTAAAACCGTCGAAAATATc > 1:18353741/1‑35 (MQ=255) tcccgccaACATAGTTAAAACCGTCGAAAATATCg < 1:13138839‑M2/27‑1 (MQ=255) tcccgccaACATAGTTAAAACCGTCGAAAATATCg < 1:9571015‑M2/27‑1 (MQ=255) tGCCGCCAACATAGTTAAAACCGTCGAAAATATCg > 1:13727290/1‑35 (MQ=255) gcccgccaACATAGTTAAAACCGTCGAAAATATCg < 1:18022228‑M2/27‑1 (MQ=255) ccccgccaACATAGTTAAAACCGTCGAAAATATCg < 1:8565160‑M2/27‑1 (MQ=255) gccgccAACATAGTTAAAACCGTCGAAAATATCgg > 1:12566185/1‑35 (MQ=255) gccgccAACATAGTTAAAACCGTCGAAAATATCgg > 1:13176183/1‑35 (MQ=255) gccgccAACATAGTTAAAACCGTCGAAAATATCgg > 1:19090723/1‑35 (MQ=255) gccgccAACATAGTTAAAACCGTCGAAAATATCgg > 1:7994168/1‑35 (MQ=255) gccgccAACATAGTTAAAACCGTCGAAAATATCgg > 1:17441965/1‑35 (MQ=255) gcccccAACATAGTTAAAACCGTCGAAAATATCgg < 1:14395031/35‑1 (MQ=255) cccgccaACATAGTTAAAACCGTCGAAAATATCgg < 1:19379034‑M2/28‑1 (MQ=255) cccgccaACATAGTTAAAACCGTCGAAAATATCgg < 1:5060415‑M2/28‑1 (MQ=255) ccgccaACATAGTTAAAACCGTCGAAAATATCGGa < 1:16677934‑M2/29‑1 (MQ=255) ccgccaACATAGTTAAAACCGTCGAAAATATCGGa < 1:8319998‑M2/29‑1 (MQ=255) cagccaACATAGTTAAAACCGTCGAAAATATCGGa < 1:19218733‑M2/29‑1 (MQ=255) cgccaACATAGTTAAACCCGTCGAAAATATCGGaa < 1:7302064‑M2/30‑1 (MQ=255) cgccaACATAGTTAAAACCGTCGAAAATATCGGaa < 1:16510675‑M2/30‑1 (MQ=255) cgccaACATAGTTAAAACCGTCGAAAATATCGGaa < 1:19232256‑M2/30‑1 (MQ=255) cgccaACATAGTTAAAACCGTCGAAAATATCGGaa > 1:1807149‑M2/6‑35 (MQ=255) cgcaaACATAGTTAAAACCGTCGAAAATATCGGaa < 1:15435461‑M2/30‑1 (MQ=255) ccccaACATAGTTAAAACCGTCGAAAATATCGGaa < 1:16420977‑M2/30‑1 (MQ=255) ccccaACATAGTTAAAACCGTCGAAAATATCGGaa < 1:1763156‑M2/30‑1 (MQ=255) gccaACATAGTTAAAACCGTCGAAAATATCGGAAt < 1:11588542‑M2/31‑1 (MQ=255) gccaACATAGTTAAAACCGTCGAAAATATCGGAAt < 1:2083010‑M2/31‑1 (MQ=255) ccaACATAGTTAAAACCGTCGAAAATATCGGAAtt > 1:10044970‑M2/4‑35 (MQ=255) ccaACATAGTTAAAACCGTCGAAAATATCGGAAtt < 1:13104962‑M2/32‑1 (MQ=255) ccaACATAGTTAAAACCGTCGAAAATATCGGAAtt < 1:5159219‑M2/32‑1 (MQ=255) ccaACATAGTTAAAACCGTCGAAAATATCGGAAtt < 1:5341684‑M2/32‑1 (MQ=255) ccaACATAGTTAAAACCGTCGAAAATATAGGAAtt < 1:19949128‑M2/32‑1 (MQ=255) caACATAGTTAAAACCGTCGAAAATATCGGAATTg > 1:8158755‑M2/3‑35 (MQ=255) caACATAGTTAAAACCGTCGAAAATATCGGAATTg < 1:10952186‑M2/33‑1 (MQ=255) aACATAGTTAAAACCGTCGAAAATATCGGAATTGa < 1:3908812‑M2/34‑1 (MQ=255) aACATAGTTAAAACCGTCGAAAATATCGGAATTGa < 1:4434164‑M2/34‑1 (MQ=255) aACATAGTTAAAACCGTCGAAAATATCGGAATTGa > 1:10649585‑M2/2‑35 (MQ=255) aCATAGTTAAAACCGTCGAAAATATCGGAATTGAg > 1:6946309/1‑35 (MQ=255) aCATAGTTAAAACCGTCGAAAATATCGGAATTGAg > 1:15154241/1‑35 (MQ=255) aCATAGTTAAAACCGTCGAAAATATCGGAATTGAg > 1:1394509/1‑35 (MQ=255) | AACATTTGATCGTCAGTACTGACACTGCCGCCAACATAGTTAAAACCGTCGAAAATATCGGAATTGAG > REL606/2397809‑2397876 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |