New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1822767 =84 (0.820)11 (0.140) 3/38 NT 13.7% coding (1422/1962 nt) topB DNA topoisomerase III
?REL606 = 2900727 72 (0.890)coding (86/771 nt) yqeC hypothetical protein

ACGCCACTGCCTGTGGTGGCGAAAGGCGATGAGTTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1822805‑1822767
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgGGGGGAAAACCAGCTTGCTTTTTTGGCTGGCAGA  <  REL606/2900727‑2900694
                                                                         
ACGCCCCTGCCTGTGGTGGCGAAAGGCGATGAGTT                                        <  1:10750318/35‑1
ACGCCACTGCCTTTGGTGGCGAAAGGCGATGAGTT                                        >  1:17709826/1‑35
ACGCCACTGCCTGTGGTTGCGAAAGGCGATGAGTT                                        >  1:15266922/1‑35
  GCCGCTGCCTGTGGTGGCGAAAGGCGATGAGTTGC                                      <  1:502157/35‑1
  GCCACTGCATGTGGTGGCGAAAGGCGATGAGTTGC                                      <  1:17101182/35‑1
   cccCTGCCTGTGGTGGCGAAAGGCGATGAGTTGCT                                     <  1:4776402/32‑1
   cccCTGCCTGTGGTGGCGAAAGGCGATGAGTTGCT                                     <  1:18172273/32‑1
   CCACTGCCTGTGGTGGCGAAAGGCGATGAGGTGCT                                     >  1:1989452/1‑35
    ccCTGCCTGTGGTGGCGAAAGGCGATGAGTTGCTG                                    <  1:5197098/33‑1
    CACTGCCTGTGGTGGCGAAAGGCGATGAGTTGCTG                                    >  1:9602157/1‑35
    CACTGCCTGTGGTGGCGAAAGGCGATGAGGTGCTG                                    >  1:8474544/1‑35
      CTGCCTGTGGTGGCGAAAGGCGATGAGTTGCTGGG                                  >  1:827183/1‑35
        GCCTGTGGTGGCGAAAGGCGATGAGTTGCTGGGGG                                >  1:661719/1‑35
         CCTGTGGTGTCGAAAGGCGATGAGTTGCTGGGGGG                               >  1:7024687/1‑35
          CTGTGGTGGCGAAAGGCGATGAGTTGCTGGGGGGA                              >  1:8194129/1‑35
          CTGTGGTGGCGAAAGGCGATGAGTTGCTGGGGGGA                              >  1:6025834/1‑35
          CTGTGGTGGCGAAAGGCGATGAGTTGCTGCGGGGA                              >  1:12001901/1‑35
            GTGGTGGCGAAAGGCGATGAGTTGCTGGGGGGAAA                            >  1:9486271/1‑35
             TGGTGGCGAAAGGCGATGAGTTGCTGGGGGGAAAA                           >  1:18405528/1‑35
             TGGTGGCGAAAGGCGATGAGTTGCTGGGGGGAAAA                           >  1:9265414/1‑35
              GGTGGCGAAAGGCGATGAGTTGCTGGGGGGAAAAg                          >  1:1851664/1‑34
              GGTGGCGAAAGGCGATGAGTTGCTGGGGGGAAAAg                          >  1:19007127/1‑34
              GGTGGCGAAAGGCGATGAGTTGCTGGGGGGAAAAg                          >  1:15097909/1‑34
               GTGGCGAAAGGCGATGAGTTGCTGGGGGGAAAAag                         >  1:16198305/1‑33
                TGGCGAAAGGCGATGAGTTGCTGGGGGGAAAAggg                        >  1:13871513/1‑32
                                  TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG      <  1:854092/35‑1
                                  TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG      >  1:5307588/1‑35
                                  TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG      >  1:2522236/1‑35
                                  TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG      <  1:20134874/35‑1
                                  TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG      >  1:19953986/1‑35
                                  TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG      >  1:15488413/1‑35
                                  TGCTGGGGGGAAAACCAGCTTGCTTTTTTGGCTGG      <  1:17503518/35‑1
                                      GGGGGGAAAACCAGCTTGCTTTTTTGGCTGGGAGc  >  1:13354295/1‑34
                                                                         
ACGCCACTGCCTGTGGTGGCGAAAGGCGATGAGTTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1822805‑1822767
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgGGGGGAAAACCAGCTTGCTTTTTTGGCTGGCAGA  <  REL606/2900727‑2900694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.