New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1493185140 (1.360)10 (0.120) 4/38 NT 10.9% intergenic (‑10/‑232) yncD/yncE predicted iron outer membrane transporter/hypothetical protein
?REL606 3269358 = 53 (0.650)coding (415/972 nt) ispB octaprenyl diphosphate synthase

ACGGTCTGTCGGACGGAAAAAATCTTCATGAAAAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1493147‑1493185
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAC  >  REL606/3269358‑3269391
                                                                         
ACGGTCTGTCGGACGGAAAAAATCTTCCTGAAAAA                                        <  1:4125004/35‑1
ACGGTCTGTCGGACGGAAAAAATCTTCATGAAAAA                                        <  1:597729/35‑1
ACGGTCTGTCGGACGGAAAAAATCTTCATGAAAAA                                        <  1:16169038/35‑1
ACGGTCTGTCGGACGGAAAAAATCTTCATGAAAAA                                        >  1:13668231/1‑35
ACGGTCTGTCGGACGGAAAAAATCTTCATGAAAAA                                        >  1:19935879/1‑35
ACGGTCTGTCGGACGGAAAAAATCTTCATGAAAAA                                        <  1:12790090/35‑1
 CGGTCTGTCGGACGGAAAAAATCTTCATGAAAAAA                                       >  1:1405599/1‑35
 CGGTCTGTCGGACGGAAAAAATCTTCATGAAAAAA                                       <  1:14343279/35‑1
 CGGTCTGTCGGACGGAAAAAATCTTCATGAAAAAA                                       <  1:15829070/35‑1
 CGGTCTGTCGGACGGAAAAAATCTTCATGAAAAAA                                       <  1:16597495/35‑1
 CGGTCTGTCGGACGGAAAAAATCTTCATGAAAAAA                                       <  1:20170015/35‑1
 CGGTCTGTCGGACGGAAAAAATCTTCATGAAAAAA                                       >  1:413610/1‑35
 CGGTCTGTCGGACGGAAAAAATCTTCATGAAAAAA                                       >  1:8492121/1‑35
  GGTCTGTCGGACGGAAAAAATCTTCATGAAAAAAG                                      >  1:2767609/1‑35
  GGTCTGTCGGACGGAAAAAATCTTCATGAAAAAAG                                      >  1:16883128/1‑35
  GGTCTGTCGGACGGAAAAAATCTTCATGAAAAAAG                                      >  1:3588790/1‑35
  GGTCTGTCGGACGGAAAAAATCTTCATGAAAAAAG                                      >  1:13690465/1‑35
  GGTCTGTCGGACGGAAAAAATCTTCATGAAAAAAG                                      <  1:5550929/35‑1
  GGTCTGTCGGACGGAAAAAATCTTCATGAAAAAAG                                      >  1:10124270/1‑35
   GTCTGTCGGACGGAAAAAATCTTCATGAAAAAAGC                                     <  1:17547392/35‑1
   GTCTGTCGGACGGAAAAAATCTTCATGAAAAAAGC                                     <  1:6726352/35‑1
   GTCTGTCGGACGGAAAAAATCTTCATGAAAAAAGC                                     <  1:13736840/35‑1
   GTCTGTCGGACGGAAAAAATCTTCATGAAAAAAGC                                     <  1:13029551/35‑1
    TCTGTCGGACGGAAAAAATCTTCATGAAAAAAGCC                                    <  1:12949359/35‑1
    TCTGTCGGACGGAAAAAATCTTCATGAAAAAAGCC                                    <  1:12390848/35‑1
                      aagTCATGAAAAAAGCCGTAAACGTCATCGCAGAA                  <  1:14863091/32‑1
                        gTCATGTAAAAAGCCGTAAACGTCATCGCAGAAGG                <  1:5443679/34‑1
                        gTCATGAAAAAAGCCGTAAACGTCATCGCAGAAGG                <  1:17179004/34‑1
                        gTCATAAAAAAAGCCGTAAACGTCATCGCAGAAGG                <  1:19017752/34‑1
                        gTCAGGAAAAAAGCCGTAAACGTCATCGCAGAAGG                <  1:2460917/34‑1
                         TCATGAAAAAAGCCGTAAACGTCATCGCAGAAGGT               <  1:8599467/35‑1
                         TCAGGAAAAAAGCCGTAAACGTCATCGCAGAAGGT               <  1:5382880/35‑1
                          CATGAAAAAAGCCGTAAACGTCATCGCAGAAGGTG              <  1:1962606/35‑1
                           ATGTAAAAAGCCGTAAACGTCATCGCAGAAGGTGA             <  1:16674347/35‑1
                            tgtAAAAAGCCGTAAACGTCATCGCAGAAGGTGAA            <  1:19994859/32‑1
                            taAAAAAAGCCGTAAACGTCATCGCAGAAGGTGAA            <  1:15614270/33‑1
                            TGAAAAAAGCCGTAAACGTCATCGCAGAAGGTGAA            <  1:18106712/35‑1
                             gtAAAAAGCCGTAAACGTCATCGCAGAAGGTGAAG           <  1:3627903/33‑1
                             aAAAAAAGCCGTAAACGTCATCGCAGAAGGTGAAG           <  1:19271404/34‑1
                             GAAAAAAGCCGTAAACGTCATCGCAGAAGGTGAAG           <  1:17310271/35‑1
                              tAAAAAGCCGTAAACGTCATCGCAGAAGGTGAAGT          <  1:7725638/34‑1
                              tAAAAAGCCGTAAACGTCATCGCAGAAGGTGAAGT          <  1:9915048/34‑1
                              gagAAAGCCGTAAACGTCATCGCAGAAGGTGAAGT          <  1:1238145/32‑1
                              AAAAAAGCCGTAAACGTCATCGCAGAAGGTGAAGT          <  1:15090032/35‑1
                               AAAAAGCCGTAAACGTCATCGCAGAAGGTGAAGTT         <  1:3684132/35‑1
                                AAAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTC        <  1:5978853/35‑1
                                AAAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTC        <  1:12446975/35‑1
                                AAAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTC        <  1:10896016/35‑1
                                AAAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTC        <  1:18680726/35‑1
                                 AAAGCCGTAAACGTCATCGCAGAAGGTGAGGTTCT       <  1:15847646/35‑1
                                 AAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCT       <  1:5810413/35‑1
                                 AAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCT       <  1:20498800/35‑1
                                 AAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCT       <  1:17454208/35‑1
                                  AAGCCGTAAACGTCATCGCAGAATGTGAAGTTCTG      >  1:13176631/1‑35
                                  AAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTG      <  1:13695300/35‑1
                                   AGCCGTAAACGTCATCGCAGAATGTGAAGTTCTGC     >  1:3436685/1‑35
                                   AGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGC     >  1:15471850/1‑35
                                   AGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGC     >  1:4036524/1‑35
                                   AGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGC     <  1:12247447/35‑1
                                   AGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGC     >  1:4372515/1‑35
                                   AGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGC     >  1:5591226/1‑35
                                    GCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCA    <  1:10578682/35‑1
                                    GCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCA    >  1:15519470/1‑35
                                    GCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCA    <  1:11460069/35‑1
                                    GCCGTAAACGTCATAGCAGAAGGTGAAGTTCTGCA    <  1:20288843/35‑1
                                     CCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAA   <  1:6276713/35‑1
                                     CCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAA   >  1:18248977/1‑35
                                     CCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAA   >  1:1905636/1‑35
                                      CGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAC  <  1:11310561/35‑1
                                      CGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAC  <  1:1373416/35‑1
                                      CGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAC  <  1:12246623/35‑1
                                      CGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAC  >  1:13281076/1‑35
                                                                         
ACGGTCTGTCGGACGGAAAAAATCTTCATGAAAAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1493147‑1493185
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAAC  >  REL606/3269358‑3269391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.