New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1076727 =60 (0.580)8 (0.090) 5/40 NT 14.4% coding (1182/2547 nt) torA trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit
?REL606 3786648 = 45 (0.530)coding (75/339 nt) ECB_03525 conserved hypothetical protein

Only 100 of 109 total aligned reads displayed.

GTGCATGATAATAGGATATCCAATATTGCACAGCCTGGCCGCCAACTGTGATAACGGCATGTTTGAGCT  >  REL606/3786614‑3786682
                                  |                                  
gtgCATGATAATAGGATATCCAATATTGCACAGcc                                    >  1:7348591/1‑35 (MQ=255)
gtgCATGATAATAGGATATCCAATATTGCAAAGcc                                    >  1:16534615/1‑35 (MQ=255)
 tgCATGATAATAGGATATCCAATATTGCACAGCCt                                   >  1:10085700/1‑35 (MQ=255)
 tgCATGATAATAGGATATCCAATATTGCACAGCCt                                   >  1:6454111/1‑35 (MQ=255)
 tgCATGATAATAGGATATCCAATATTGCACAACCt                                   >  1:1677333/1‑35 (MQ=255)
  gCATGATAATAGGATATCCAATATTGCACAGCCTg                                  >  1:17809169/1‑35 (MQ=255)
   cATGATAATAGGATATCCAATATTGCACAGCCttg                                 >  1:6291228/1‑33 (MQ=255)
   cATGATAATAGGATATCCAATATTGCACAGCCTgg                                 >  1:147620/1‑35 (MQ=255)
   cATGATAATAGGATATCCAATATTGCACAGCCTgg                                 >  1:18443438/1‑35 (MQ=255)
   cATGATAATAGGATATCCAATATTGCACAGCCTgg                                 >  1:4846105/1‑35 (MQ=255)
   cATGATAATAGGATATCCAATATTGCACAGCCTgg                                 >  1:5856616/1‑35 (MQ=255)
     tGATAATAGGATATCCAATATTGCACAGCCTGgcc                               >  1:11866031/1‑35 (MQ=255)
      gATAATAGGATATCCAATATTGCACAGCCTGgccg                              >  1:3465278/1‑35 (MQ=255)
      gATAATAGGATATCCAATATTGCACAGCCTGgccg                              >  1:8212545/1‑35 (MQ=255)
      gATAATAGGATATCCAATATTGCACAGCCTGgccg                              >  1:16098445/1‑35 (MQ=255)
       ataataGGATATCCAATATTGCACAGCCTGgccgc                             >  1:19207417/1‑35 (MQ=255)
       ataataGGATATCCAATATTGCACAGCCTGgccgc                             >  1:847951/1‑35 (MQ=255)
        taataGGATATCCAATATTGCACAGCCTGgccgcc                            >  1:6882457/1‑35 (MQ=255)
           taGGATATCCAATATTGCACAGCCTGGCCGCCAAc                         >  1:14230519/1‑35 (MQ=255)
            tggATATCCAATATTGCACAGCCTGGCCGCCAACt                        >  1:15055066/2‑35 (MQ=255)
            aGGATATCCAATATTGCACAGCCTGGCCGCCAACt                        >  1:2812382/1‑35 (MQ=255)
            aGGATATCCAATATTGCACAGCCTGGCCGCCAACt                        >  1:17055562/1‑35 (MQ=255)
             ggATATCCAATATTGCACAGCCTGGCCGCCAACtg                       >  1:3818043/1‑35 (MQ=255)
             ggATATCCAATATTGCACAGCCTGGCCGCCAACtg                       >  1:8016822/1‑35 (MQ=255)
              gATATCCAATATTGCACAGCCTGGCCGCCAACtgt                      >  1:10571383/1‑35 (MQ=255)
              gATATCCAATATTGCACAGCCTGGCCGCCAACtgt                      >  1:10644945/1‑35 (MQ=255)
              gATATCCAATATTGCACAGCCTGGCCGCCAACtgt                      >  1:1590563/1‑35 (MQ=255)
               atatCCAATATTGCACAGCCTGGCCGCCAACtgtg                     >  1:15389796/1‑35 (MQ=255)
               atatCCAATATTGCACAGCCTGGCCGCCAACtgtg                     >  1:14565301/1‑35 (MQ=255)
                 atCCAATATTGCACAGCCTGGCCGCCAACTGTGAt                   >  1:11678008/1‑35 (MQ=255)
                 atCCAATATTGCACAGCCTGGCCGCCAACTGTGAt                   >  1:13316591/1‑35 (MQ=255)
                 atCCAATATTGCAAAGCCTGGCCGCCAACTGTGAt                   <  1:429702/35‑1 (MQ=255)
                  tCCAATATTGCACAGCCTGGCCGCCAACTGTGATa                  >  1:16710145/1‑35 (MQ=255)
                   ccAATATTGCACAGCCTGGCCGCCAACTGTGATaa                 >  1:13238295/1‑35 (MQ=255)
                    cAATATTGCACAGCCTGGCCTCCAACTGTGATAAc                >  1:19198077/1‑35 (MQ=255)
                    cAATATTGCACAGCCTGGCCGCCAACTGTGATAAc                >  1:14626395/1‑35 (MQ=255)
                    cAATATTGCACAGCCTGGCCGCCAACTGTGATAAc                >  1:19795288/1‑35 (MQ=255)
                    cAATATTGCACAGCCTGGCCGCCAACTGTGATAAc                >  1:10971224/1‑35 (MQ=255)
                    cAATATTGCACAGCCTGGCCGCCAACTGTGATAAc                >  1:11135483/1‑35 (MQ=255)
                     aatatgccccagcCTGGCCGCCAACTGTGATAACg               <  1:10905499‑M2/22‑1 (MQ=255)
                     aatatgccccagcCTGGCCGCCAACTGTGATAACg               <  1:9249030‑M2/22‑1 (MQ=255)
                     aaTATTGCACAGCCTGGCCGCCAACTGTGATAACg               >  1:10833010/1‑35 (MQ=255)
                     aaTATTCCCCAGCCTGGCCGCCAACTGTGATAACg               <  1:4269283/35‑1 (MQ=37)
                      atttggcccagcCTGGCCGCCAACTGTGATAACgg              <  1:203262‑M2/23‑1 (MQ=255)
                      atttcccccagcCTGGCCGCCAACTGTGATAACgg              <  1:11372977‑M2/23‑1 (MQ=255)
                      atatTGCACAGCCTGGCCGCCAACTGTGATaaaga              >  1:18550825/1‑32 (MQ=255)
                      atatTGCACAGCCTGGCCGCCAACTGTGATAACgg              >  1:9545232/1‑35 (MQ=255)
                      atatTGCACAGCCTGGCCGCCAACTGTGATAACgg              >  1:17101364/1‑35 (MQ=255)
                      atatTGCACAGCCTGGCCGCCAACTGTGATAACgg              >  1:6129260/1‑35 (MQ=255)
                       tttcccccagcCTGGCCGCCAACTGTGATAACGGc             <  1:194887‑M2/24‑1 (MQ=255)
                        ttgccccagcCTGGCCGCCAACTGTGATAACGGCa            <  1:6536941‑M2/25‑1 (MQ=255)
                        atgccccagcCTGGCCGCCAACTGTGATAACGGCa            <  1:1310456‑M2/25‑1 (MQ=255)
                        atTGCACAGCCTGGCCGCCAACTGTGATAACGGCa            >  1:5875579/1‑35 (MQ=255)
                        atTGCACAGCCTGGCCGCCAACTGTGATAACGGCa            >  1:2091710/1‑35 (MQ=255)
                        atTGCACAGCCTGGCCGCCAACTGTGATAACGGCa            >  1:7718480/1‑35 (MQ=255)
                        atTGCACAGCCTGGCCGCCAACTGTGATAACGGCa            >  1:20057028/1‑35 (MQ=255)
                         ttgcccagcCTGGCCGCCAACTGTGATAACGGCAt           <  1:15175033‑M2/26‑1 (MQ=255)
                         ttGCACAGCCTGGCCGCCAACTGTGATAACGGCAt           >  1:14706501/1‑35 (MQ=255)
                         tgccccagcCTGGCCGCCAACTGTGATAACGGCAt           <  1:2798884‑M2/26‑1 (MQ=255)
                          tGCACAGCCTGGCCGCCAACTGTGATAACGGCATg          >  1:5503056/1‑35 (MQ=255)
                          tGCACAGCCTGGCCGCCAACTGTGATAACGGCATg          >  1:8170315/1‑35 (MQ=255)
                          tGCACAGCCTGGCCGCCAACTGTGATAACGGCATg          >  1:2910663/1‑35 (MQ=255)
                           gCACAGCCTGGCCGCCAACTGTGATAACGGCATGt         >  1:6012667/1‑35 (MQ=255)
                           gCACAGCCTGGCCGCCAACTGTGATAACGGCATGt         >  1:14677652/1‑35 (MQ=255)
                           gCACAGCCTGGCCGCCAACTGTGATAACGGCATGt         >  1:2116450/1‑35 (MQ=255)
                           ccccagcCTGGCCGCCAACTGTGATAACGGCATGt         <  1:15279511‑M2/28‑1 (MQ=255)
                            cccagcCTGGCCGCCAACTGTGATAACGGCATGtt        <  1:894581‑M2/29‑1 (MQ=255)
                            cccagcCTGGCCGCCAACTGTGATAACGGCATGtt        <  1:11612674‑M2/29‑1 (MQ=255)
                            cacaGCCTGGCCGCCAACTGTGATAACGGCATGtt        <  1:7822783/35‑1 (MQ=255)
                             ccagcCTGGCCGCCAACTGTGATAACGGCATGttt       <  1:13965963‑M2/30‑1 (MQ=255)
                             ccagcCTGGCCGCCAACTGTGATAACGGCATGttt       <  1:15097603‑M2/30‑1 (MQ=255)
                             acaGCCTGGCCGCCAACTGTGATAACGGCATTttt       >  1:4490086/1‑35 (MQ=255)
                             acaGCCTGGCCGCCAACTGTGATAACGGCATGttt       >  1:14403138/1‑35 (MQ=255)
                             acaGCCTGGCCGCCAACTGTAATAACGGCATGttt       >  1:6629093/1‑35 (MQ=255)
                              cagcCTGGCCGCCAACTGTGATAACGGCATGTTTg      >  1:16835668‑M2/5‑35 (MQ=255)
                              cagcCTGGCCGCCAACTGTGATAACGGCATGTTTg      <  1:5958240‑M2/31‑1 (MQ=255)
                              cagcCTGGCCGCCAACTGTGATAACGGCATGTTTg      >  1:13297404‑M2/5‑35 (MQ=255)
                              cagcCTGGCCGCCAACTGTGATAACGGCATGTTTg      >  1:19478588‑M2/5‑35 (MQ=255)
                              cagcCTGGCCGCCAACTGTGATAACGGCATGTTTg      >  1:19495353‑M2/5‑35 (MQ=255)
                              cagcCTGGCCGCCAACTGTGATAACGGCATGTTTg      >  1:13362535‑M2/5‑35 (MQ=255)
                              cagcCTGGCCGCCAACTGTGATAACGGCATGTTTg      >  1:378190‑M2/5‑35 (MQ=255)
                               agcCTGGCCGCCAACTGTGATAACGGCATGTTTGa     <  1:8507605‑M2/32‑1 (MQ=255)
                               agcCTGGCCGCCAACTGTGATAACGGCATGTTTGa     >  1:17369187‑M2/4‑35 (MQ=255)
                               agcCTGGCCGCCAACTGTGATAACGGCATGTTTGa     <  1:2756243‑M2/32‑1 (MQ=255)
                               agcCTGGCCGCCAACTGTGATAACGGCATGTTTGa     >  1:19010127‑M2/4‑35 (MQ=255)
                               agcCTGGCCGCCAACTGTGATAACGGCATGTTTGa     <  1:5172150‑M2/32‑1 (MQ=255)
                               agcCTGGCCGCCAACTGTGATAACGGCATGTTTGa     >  1:2206674‑M2/4‑35 (MQ=255)
                                gcCTGGCCGCCAACTGTGATAACGGCATGTTTGAg    <  1:15678713‑M2/33‑1 (MQ=255)
                                gcCTGGCCGCCAACTGTGATAACGGCATGTTTGAg    >  1:6894233‑M2/3‑35 (MQ=255)
                                gcCTGGCCGCCAACTGTGATAACGGCATGTTTGAg    >  1:3367634‑M2/3‑35 (MQ=255)
                                gcCTGGCCGCCAACTGTGATAACGGCATGTTTGAg    <  1:14457345‑M2/33‑1 (MQ=255)
                                 cCTGGCCGCCAACTGTGATAACGGCATGTTTGAGc   >  1:18295397‑M2/2‑35 (MQ=255)
                                 cCTGGCCGCCAACTGTGATAACGGCATGTTTGAGc   <  1:5147051‑M2/34‑1 (MQ=255)
                                  cTGGCCGCCAACTGTGATAACGGCATGTTTGAGCt  >  1:13562392/1‑35 (MQ=255)
                                  cTGGCCGCCAACTGTGATAACGGCATGTTTGAGCt  <  1:2486961/35‑1 (MQ=255)
                                  cTGGCCGCCAACTGTGATAACGGCATGTTTGAGCt  >  1:11405371/1‑35 (MQ=255)
                                  cTGGCCGCCAACTGTGATAACGGCATGTTTGAGCt  <  1:3687876/35‑1 (MQ=255)
                                  cTGGCCGCCAACTGTGATAACGGCATGTTTGAGCt  <  1:3979398/35‑1 (MQ=255)
                                  cTGGCCGCCAACTGTGATAACGGCATGTTTGAGCt  <  1:16420642/35‑1 (MQ=255)
                                  cTGGCCGCCAACTGTGATAACGGCATGTTTGAGCt  >  1:17019634/1‑35 (MQ=255)
                                  |                                  
GTGCATGATAATAGGATATCCAATATTGCACAGCCTGGCCGCCAACTGTGATAACGGCATGTTTGAGCT  >  REL606/3786614‑3786682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.