New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 699047102 (0.990)3 (0.040) 3/36 NT 4.6% coding (1314/1320 nt) potE putrescine/proton symporter: putrescine/ornithine antiporter
?REL606 1115826 = 48 (0.620)coding (428/834 nt) csgG outer membrane lipoprotein

GATCATTCAATCGCCCTTTTTTACTTTGTTTTATTAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/699008‑699047
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaccgATAATCGAACCTTCAACCATGATATTTGCCGCCG  >  REL606/1115826‑1115859
                                                                          
GATCATTCAATCGCCCTTTTTTACTTTGTTTTATT                                         >  1:6618664/1‑35
GATCATTCAATCGCCCTTTTTTACTTTGTTTTATT                                         >  1:5862578/1‑35
GATCATTCAATCGCCCTTTTTTACTTTGTTTTATT                                         <  1:229788/35‑1
GATCATTCAATCGCCCTTTTTTACTTTGTTTTATT                                         >  1:19442005/1‑35
GATCATTCAATCGCCCTTTTTTACTTTGTTTTATT                                         >  1:11309864/1‑35
GATCATTCAATCGCCCTTTTTTACTTTGTTTTATT                                         >  1:17670832/1‑35
GATCATTCAATCGCCCTTTTTTACTTTGTTTTATT                                         >  1:17557592/1‑35
GATCATTCAATCGCCCTTTTTTACTTTGTTTTATT                                         <  1:11723625/35‑1
GATCATTCAATCGCCCTTTTTTACTTTGTTTTATT                                         >  1:152683/1‑35
GATCATTCAATCGCCCTTTTTTACTTTGTTTTATT                                         <  1:15172846/35‑1
 ATCATTCAATCGCCCTTTTTTACTTTGTTTTATTA                                        >  1:10890066/1‑35
 ATCATTCAATCGCCCTTTTTTACTTTGTTTTATTA                                        >  1:14788908/1‑35
 ATCATTCAATCGCCCTTTTTTACTTTGTTTTATTA                                        >  1:12804960/1‑35
  TCATTCAATCGCCCTTTTTTACTTTGTTTTATTAg                                       >  1:180641/1‑34
  TCATTCAATCGCCCTTTTTTACTTTGTTTTATTAA                                       <  1:4224091/35‑1
  TCATTCAATCGCCCTTTTTTACTTTGTTTTATTAA                                       <  1:14655010/35‑1
  TCATTCAATCGCCCTTTTTTACTTTGTTTTATTAA                                       >  1:11573305/1‑35
  TCATTCAATCGCCCTTTTTTACTTTGTTTTATTAA                                       >  1:1200598/1‑35
  TCATTCAATCGCCCTTTTTTACTTTGTTTTATTAA                                       <  1:11397424/35‑1
  TCATTCAATCGCCCTTTTTTACTTTGTTTTATTAA                                       >  1:1014720/1‑35
  TCATTCAACCGCCCTTTTTTACTTTGTTTTATTAA                                       >  1:20126239/1‑35
   CATTCAATCGCCGTTTTTTACTTTGTTTTATTAAC                                      >  1:29362/1‑35
   CATTCAATCGCCCTTTTTTACTTTGTTTTATTAAC                                      >  1:20548580/1‑35
   CATTCAATCGCCCTTTTTTACTTTGTTTTATTAAC                                      <  1:13606972/35‑1
   CATTCAATCGCCCTTTTTTACTTTGTTTTATTAAC                                      >  1:2288467/1‑35
   CATTCAATCGCCCTTTTTTACTTTGTTTTATTAAC                                      >  1:15491994/1‑35
    ATTCAATCGCCCTTTTTTACTTTGTTTTATTAACC                                     <  1:2209759/35‑1
    ATTCAATCGCCCTTTTTTACTTTGTTTTATTAACC                                     >  1:3535732/1‑35
    ATTCAATCGCCCTTTTTTACTTTGTTTTATTAACC                                     <  1:15157095/35‑1
    ATTCAATCGCCCTTTTTTACTTTGTTTTATTAACC                                     <  1:15816741/35‑1
    ATTCAATCGCCCTTTTTTACTTTGTTTTATTAACC                                     <  1:13159026/35‑1
    ATTCAATCGCCCTTTTTTACTTTGTTTTATTAACC                                     <  1:9771618/35‑1
     TTCAATCGCCCTTTTTTACTTTGTTTTATTAACCG                                    <  1:7117053/35‑1
     TTCAATCGCCCTTTTTTACTTTGTTTTATTAACCG                                    <  1:5819730/35‑1
     TTCAATCGCCCTTTTTTACTTTGTTTTATTAACCG                                    <  1:1757624/35‑1
     TTCAATCGCCCTTTTTTACTTTGTTTTATTAACCG                                    >  1:1412544/1‑35
     TTCAATCGCCCTTTTTTACTTTGTTTTATTAACCG                                    <  1:13378566/35‑1
                        TTTTTTTTATTAACCGATAATCGAACCTTCAACCA                 <  1:8154830/35‑1
                          TGTTTTATTAACCGATAATCGAACCTTCAACCATG               <  1:1042575/35‑1
                            TTTTATTACCCGATAATCGAACCTTCAACCATGAT             <  1:4410517/35‑1
                             TTTTTTAACCGATAATCGAACCTTCAACCATGATA            <  1:10364598/35‑1
                              TTATTACCCGATAATCGAACCTTCAACCATGATAT           <  1:7347313/35‑1
                               TATTACCCGATAATCGAACCTTCAACCATGATATT          <  1:12576869/35‑1
                                ttaAACCGATAATCGAACCTTCAACCATGATATTT         <  1:18270046/32‑1
                                tTTACCCGATAATCGAACCTTCAACCATGATATTT         <  1:19436601/34‑1
                                tTTACCCGATAATCGAACCTTCAACCATGATATTT         <  1:16650938/34‑1
                                 TTACCCGATAATCGAACCTTCAACCATGATATTTG        <  1:1609221/35‑1
                                  tacCCGATAATCGAACCTTCAACCATGATATTTGC       <  1:9138567/32‑1
                                  aacCCGATAATCGAACCTTCAACCATGATATTTGC       <  1:1334634/32‑1
                                  TAACCGATAATCGAACCTTCAACCATGATATTTGC       >  1:15322215/1‑35
                                   acCCGATAATCGAACCTTCAACCATGATATTTGCC      <  1:15023743/33‑1
                                   acCCGATAATCGAACCTTCAACCATGATATTTGCC      <  1:10563753/33‑1
                                   AACCGATAATCGAACCTTCAACCATGATATTTGCC      >  1:10990672/1‑35
                                   AACCGATAATCGAACCTTCAACCATGATATTTGCC      >  1:8854644/1‑35
                                   AACCGATAATCGAACCTTCAACCATGATATTTGCC      >  1:14558672/1‑35
                                    cCCGATAATCGAACCTTCAACCATGATATTTGCCG     <  1:19909414/34‑1
                                    cCCGATAATCGAACCTTCAACCATGATATTTGCCG     <  1:16377686/34‑1
                                    ACCGATAATCGAACCTTCAACCATGATATTTGCCG     >  1:2457518/1‑35
                                    ACCGATAATCGAACCTTCAACCATGATATTTGCCG     >  1:9491175/1‑35
                                    ACCGATAATCGAACCTTCAACCATGATATTTGCCG     >  1:12459575/1‑35
                                    ACCGATAATCGAACCTTCAACCATGATATTTGCCG     >  1:8005977/1‑35
                                     CCGATAATCGAACCTTCAACCATGATATTTGCCGC    <  1:9204716/35‑1
                                     CCGATAATCGAACCTTCAACCATGATATTTGCCGC    <  1:18107064/35‑1
                                     CCGATAATCGAACCTTCAACCATGATATTTGCCGC    >  1:8011588/1‑35
                                     CCGATAATCGAACCTTCAACCATGATATTTGCCGC    >  1:7119290/1‑35
                                      CGATAATCGAACCTTCAACCATGATATTTGCCGCC   >  1:12578887/1‑35
                                      CGATAATCGAACCTTCAACCATGATATTTGCCGCC   >  1:12094488/1‑35
                                      CGATAATCGAACCTTCAACCATGATATTTGCCGCC   >  1:11327226/1‑35
                                      CGATAATCGAACCTTCAACCATGATATTTGCCGCC   >  1:19333584/1‑35
                                      CGATAATCGAACCTTCAACCATGATATTTGCCGCC   >  1:20313118/1‑35
                                      CGATAATCGAACCTTCAACCATGATATTTGCCGCC   <  1:20436379/35‑1
                                       GATAATCGAACCTTCAACCATGATATTTGCCGCCG  >  1:7290782/1‑35
                                       GATAATCGAACCTTCAACCATGATATTTGCCGCCG  >  1:7270096/1‑35
                                       GATAATCGAACCTTCAACCATGATATTTGCCGCCG  >  1:18387387/1‑35
                                       GATAATCGAACCTTCAACCATGATATTTGCCGCCG  >  1:14396925/1‑35
                                       GATAATCGAACCTTCAACCATGATATTTGCCGCCG  >  1:20139421/1‑35
                                       GATAATCGAACCTTCAACCATGATATTTGCCGCCG  >  1:9539325/1‑35
                                                                          
GATCATTCAATCGCCCTTTTTTACTTTGTTTTATTAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/699008‑699047
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaccgATAATCGAACCTTCAACCATGATATTTGCCGCCG  >  REL606/1115826‑1115859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.