New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 207313 = | 39 (0.380) | 6 (0.060) | 3/44 | NT | 6.9% | coding (1124/1149 nt) | lpxB | lipid‑A‑disaccharide synthase |
? | REL606 | 1513006 = | 126 (1.340) | coding (3736/3741 nt) | narZ | nitrate reductase 2 (NRZ), alpha subunit |
ACAAATTCGATCATTGTGCTAACTCCAGAACGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/207348‑207313 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttTTTTCGCCTCCTGTACCTGATCGCGACCTTCATC > REL606/1513006‑1513039 ACAAATTCGATCATTGTGCTAACTCCAGAACGGCT > 1:1511308/1‑35 ACAAATTCGATCATTGTGCTAACTCCAGAACGGCT > 1:10985837/1‑35 ACAAATTCGATCATTGTGCTAACTCCAGAACGGCT > 1:11121014/1‑35 ACAAATTCGATCATTGTGCTAACTCCAGAACGGCT > 1:11228691/1‑35 ACAAATTCGATCATTGTGCTAACTCCAGAACGGCT > 1:12721364/1‑35 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT > 1:19489853/1‑35 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT < 1:20066925/35‑1 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT > 1:2736980/1‑35 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT < 1:2791307/35‑1 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT < 1:13699857/35‑1 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT > 1:3282551/1‑35 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT < 1:12775780/35‑1 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT > 1:6331394/1‑35 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT > 1:7976743/1‑35 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT > 1:10408308/1‑35 CAAATTCGATCATTGTGCTAACTCCAGAACGGCTT < 1:10000716/35‑1 AAATTCGATCATTGTGCTAACTCCAGAACGGCTTT > 1:13525798/1‑35 AAATTCGATCATTGTGCTAACTCCAGAACGGCTTT > 1:5495060/1‑35 AAATTCGATCATTGTGCTAACTCCAGAACGGCTTT > 1:9035626/1‑35 AATTCGATCATTGTGCTAACTCCAGAACGGCTTTT > 1:19705773/1‑35 AATTCGATCATTGTGCTAACTCCAGAACGGCTTTT > 1:11131682/1‑35 ATTCGATCATTGTGCTAACTCCAGAACGGCTTTTg > 1:9332335/1‑34 ATTCGATCATTGTGCTAACTCCAGAACGGCTTTTg > 1:17642388/1‑34 ATTCGATCATTGTGCTAACTCCAGAACGGCTTTTg > 1:5892523/1‑34 ATTCGATCATTGTGCTAACTCCAGAACGGCTTTTT > 1:7728593/1‑35 TTCGATCATTGTGCTAACTCCAGAACGGCTTTTgg > 1:4846680/1‑33 TTCGATCATTGTGCTAACTCCAGAACGGCTTTTTc > 1:20510204/1‑34 TCGATCATTGTGCTAACTCCAGAACGGCTTTTgtt > 1:8901435/1‑32 TCGATCATTGTGCTAACTCCAGAACGGCTTTTgcc > 1:11993897/1‑32 TCGATCATTGTGCTAACTCCAGAACGGCTTTTTgc > 1:5096569/1‑33 TCGATCATTGTGCTAACTCCAGAACGGCTTTTTct > 1:14492731/1‑33 TCGATCATTGTGCTAACTCCAGAACGGCTTTTTTC > 1:6461776/1‑35 TCGATCATTGTGCTAACTCCAGAACGGCTTTTGTC > 1:10467552/1‑35 TCATTGTGCTAACTCCAGAACGGCTTTTTCCGCCT > 1:8103527/1‑35 CATTGTGCTAACTCCAGAACGGCTTTTTTCTCCTg > 1:9497200/1‑34 CATTGTGCTAACTCCAGAACGGCTTTTTTCGCCcg > 1:18857585/1‑33 ATTGTGCTAACTCCAGAACGGCTTTTTTCGCCTCC > 1:8913412/1‑35 TTGTGCTAACTCCAGAACGGCTTTTTTCGCCTCCT > 1:4884831/1‑35 TTGTGCTAACTCCAGAACGGCTTTTTTCGCCCCCT > 1:8057240/1‑35 TTTTTTCGCCTCCTGTACCTGATCGCGACCTTCAT > 1:14460962/1‑35 TTTTTTCGCCTCCTGTACCTGATCGCGACCTTCAT > 1:17136810/1‑35 TTTTTTCGCCTCCTGTACCTGATCGCGACCTTCAT < 1:10212491/35‑1 TTTTTTCGCCTCCTGTACCTGATCGCGACCTTCAT > 1:1771158/1‑35 TTTTTCGCCTCCTGTACCTGATCGCGACCTTCATC < 1:12949656/35‑1 TTTTTCGCCTCCTGTACCTGATCGCGACCTTCATC < 1:722411/35‑1 TTTTTCGCCTCCTGTACCTGATCGCGACCTTCATC < 1:2049945/35‑1 TTTTTCGCCTCCTGTACCTGATCGCGACCTTCATC < 1:19503175/35‑1 ACAAATTCGATCATTGTGCTAACTCCAGAACGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/207348‑207313 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttTTTTCGCCTCCTGTACCTGATCGCGACCTTCATC > REL606/1513006‑1513039 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |