New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2840701 =74 (0.720)27 (0.270) 8/46 NT 24.4% coding (1097/1098 nt) mltA membrane‑bound lytic murein transglycosylase A
?REL606 3891539 = 96 (0.970)intergenic (‑85/‑138) yieN/kup fused predicted transcriptional regulator: sigma54 activator protein/conserved protein/potassium transporter

Only 100 of 166 total aligned reads displayed.

CATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCGGT  >  REL606/2840667‑2840735
                                  |                                  
cttatCCGTAAAAACGGCATACAGAATATCACATc                                    <  1:14249595/33‑1 (MQ=255)
ccacattaacctggctcaaagaaaaataccccccc                                    >  1:7306471‑M1/35‑35 (MQ=255)
ccacattaacctggctcaaagaaaaataccccccc                                    <  1:10862690‑M1/1‑1 (MQ=255)
ccacattaacctggctcaaagaaaaataccccccc                                    >  1:20212054‑M1/35‑35 (MQ=255)
ccacattaacctggctcaaagaaaaataccccccc                                    >  1:1269890‑M1/35‑35 (MQ=255)
cATATCCGTAAAAACGGCATACAGAATATCACATc                                    >  1:775339/1‑35 (MQ=255)
cATATCCGTAAAAACGGCATACAGAATATCACATc                                    >  1:15165056/1‑35 (MQ=255)
cATATCCGTAAAAACGGCATACAGAATATCACATc                                    <  1:14148369/35‑1 (MQ=255)
cATATCCGTAAAAACGGCATACAGAATATCACATc                                    >  1:5414982/1‑35 (MQ=255)
 ttatCCGTAAAAACGGCATACAGAATATCACATCa                                   <  1:17850537/34‑1 (MQ=255)
 ttatCCGTAAAAACGGCATACAGAATATCACATCa                                   <  1:19518970/34‑1 (MQ=255)
  tatCCGTAAAAACGGCATACAGAATATCACATCAg                                  <  1:17155931/35‑1 (MQ=255)
  tatCCGTAAAAACGGCATACAGAATATCACATCAg                                  >  1:11768166/1‑35 (MQ=255)
   atCCGTAAAAACGGCATACAGAATATCACATCAGc                                 <  1:7694601/35‑1 (MQ=255)
   atCCGTAAAAACGGCATACAGAATATCACATCAGc                                 >  1:19715838/1‑35 (MQ=255)
   atCCGTAAAAACGGCATACAGAATATCACATCAGc                                 >  1:6235827/1‑35 (MQ=255)
   atCCGTAAAAACGGCATACAGAATATCACATCAGc                                 >  1:11644681/1‑35 (MQ=255)
   atCCGTAAAAACGGCATACAGAATATCACATCAGc                                 <  1:12058911/35‑1 (MQ=255)
   atCCGTAAAAACGGCATACAGAATATCACATCAGc                                 <  1:12419691/35‑1 (MQ=255)
   atCCGTAAAAACGGCATACAGAATATCACATCAGc                                 >  1:5189436/1‑35 (MQ=255)
    tCCGTAAAAACGGCATACAGAATATCACATCAGcc                                <  1:11766249/35‑1 (MQ=255)
    tCCGTAAAAACGGCATACAGAATATCACATCAGcc                                <  1:10703332/35‑1 (MQ=255)
     ccGTAAAAACGGCATACAGAATATCACATCAGCCg                               >  1:5118628/1‑35 (MQ=255)
     ccGTAAAAACGGCATACAGAATATCACATCAGCCg                               >  1:7034962/1‑35 (MQ=255)
     ccGTAAAAACGGCATACAGAATATCACATCAGCCg                               <  1:18522050/35‑1 (MQ=255)
     cagTAAAAACGGCATACAGAATATCACATCAGCCg                               <  1:12266798/33‑1 (MQ=255)
      cGTAAAAACGGCATACAGAATATCACATCAGCCGc                              >  1:13268372/1‑35 (MQ=255)
      cGTAAAAACGGCATACAGAATATCACATCAGCCGc                              >  1:13792213/1‑35 (MQ=255)
        tAAAAACTGCATACAGAATATCACATCAGCCGCTa                            >  1:10201610/1‑35 (MQ=255)
        tAAAAACGGCATACAGAATATCACATCAGCCGCTa                            >  1:555203/1‑35 (MQ=255)
        tAAAAACGGCATACAAAATATCACATGAGCCGCTa                            <  1:2320867/35‑1 (MQ=37)
         aaaaaCGGCATACAGAATATCACATCAGCCGCTaa                           >  1:3974427/1‑35 (MQ=255)
         aaaaaCGGCATACAGAATATCACATCAGCCGCTaa                           >  1:13671222/1‑35 (MQ=255)
         aaaaaCGGCATACAGAATATCACATCAGCCGCTaa                           >  1:19776641/1‑35 (MQ=255)
         aaaaaCGGCATACAGAATATCACATCAGCCGCTaa                           >  1:17778031/1‑35 (MQ=255)
          aaaaCGGCATACAGAATATCACATCAGCCGCTaaa                          >  1:10047984/1‑35 (MQ=255)
            aaCGGCATACAGAATATCACATCAGCCGCTAAAGa                        >  1:16862111/1‑35 (MQ=255)
             aCGGCATACAGAATATCACATCAGCCGCTAAAGAc                       >  1:12821460/1‑35 (MQ=255)
              cGGCATACAGAATATCACATCAGCCGCTAAAGACg                      >  1:2163147/1‑35 (MQ=255)
              cGGCATACAGAATATCACATCAGCCGCTAAAGACg                      >  1:15515036/1‑35 (MQ=255)
              cGGCATACAGAATATCACATCAGCCGCTAAAGACg                      >  1:17516503/1‑35 (MQ=255)
               ggCATACAGAATATCACATCAGCCGCTAAAGACGt                     >  1:5063875/1‑35 (MQ=255)
                gCATACAGAATATCACATCAGCCGCTAAAGACGtt                    >  1:5240481/1‑35 (MQ=255)
                gCATACAGAATATCACATCAGCCGCTAAAGACGtt                    >  1:114234/1‑35 (MQ=255)
                gCATACAGAATATCACATCAGCCGCTAAAGACGtt                    >  1:14522032/1‑35 (MQ=255)
                 cATACAGAATATCACATCAGCCGCTAAAGACGTTa                   >  1:9461353/1‑35 (MQ=255)
                 cATACAGAATATCACATCAGCCGCTAAAGACGTTa                   >  1:10357483/1‑35 (MQ=255)
                 cATACAGAATATCACATCAGCCGCTAAAGACGTTa                   >  1:1496901/1‑35 (MQ=255)
                 aaaaaaaaataccccccCAGCCGCTAAAGACGTTa                   >  1:8422934‑M1/18‑35 (MQ=255)
                  aTACAGAATATCACATCAGCCGCTAAAGACGTTAc                  >  1:3582469/1‑35 (MQ=255)
                  aTACAGAATATCACATCAGCCGCTAAAGACGTTAc                  >  1:253289/1‑35 (MQ=255)
                   tACAGAATATCACATCAGCCGCTAAAGACGTTAcc                 >  1:9651706/1‑35 (MQ=255)
                   tACAGAATATCACATCAGCCGCTAAAGACGTTAcc                 >  1:2700388/1‑35 (MQ=255)
                   aaaaaaataccccccCAGCCGCTAAAGACGTTAcc                 >  1:15846926‑M1/16‑35 (MQ=255)
                    aCAGAATATCACATCAGCCGCTAAAGACGTTACCt                >  1:20410844/1‑35 (MQ=255)
                    aCAGAATATCACATCAGCCGCTAAAGACGTTACCt                >  1:4146554/1‑35 (MQ=255)
                    aCAAAATACCACCCCAGCCGCTAAAGACGTTACCt                <  1:451243/35‑1 (MQ=19)
                     caaaaTATCACCCCAGCCGCTAAAGACGTTACCTg               <  1:18105981/32‑1 (MQ=25)
                     cAGAATATCACATCAGCCGCTAAAGACGTTACCTg               >  1:11328891/1‑35 (MQ=255)
                     aaaaataccccccCAGCCGCTAAAGACGTTACCTg               >  1:2115748‑M1/14‑35 (MQ=255)
                      aaaataccccccCAGCCGCTAAAGACGTTACCTgc              >  1:10167706‑M1/13‑35 (MQ=255)
                      aaaataccccccCAGCCGCTAAAGACGTTACCTgc              >  1:20029582‑M1/13‑35 (MQ=255)
                      aGAATATCACATCAGCCGCTAAAGACGTTACCTgc              >  1:13440675/1‑35 (MQ=255)
                      aGAATATCACATCAGCCGCTAAAGACGTTACCTgc              >  1:6885794/1‑35 (MQ=255)
                       gAATATCACATCAGCCGCTAAAGACGTTACCTgcg             >  1:6332935/1‑35 (MQ=255)
                       gAATATCACATCAGCCGCTAAAGACGTTACCTgcg             >  1:1027232/1‑35 (MQ=255)
                       aaataccccccCAGCCGCTAAAGACGTTACCTgcg             >  1:5918085‑M1/12‑35 (MQ=255)
                       aaacaccccccCAGCCGCTAAAGACGTTACCTgcg             >  1:3875650‑M1/12‑35 (MQ=255)
                       aaaaaccccccCAGCCGCTAAAGACGTTACCTgcg             >  1:8837548‑M1/12‑35 (MQ=255)
                       aaaTATACCACCAGCCGCTAAAGAAGTTACCTgcg             <  1:8392379/34‑1 (MQ=16)
                        aataccccccCAGCCGCTAAAGACGTTACCTgcgc            >  1:7687687‑M1/11‑35 (MQ=255)
                        aaTATCACATCAGCCGCTAAAGACGTTACCTgcgc            >  1:4929535/1‑35 (MQ=255)
                         ttgccccccCAGCCGCTAAAGACGTTACCTGCGcc           >  1:13089583‑M1/10‑35 (MQ=255)
                         atatCACATCAGCCGCTAAAGACGTTACCTGCGcc           >  1:5657527/1‑35 (MQ=255)
                         atatCACATCAGCCGCTAAAGACGTTACCTGCGcc           >  1:980454/1‑35 (MQ=255)
                         ataccccacCAGCCGCTAAAGACGTTACCTGCGcc           >  1:6679040‑M1/10‑35 (MQ=255)
                          tcccccccCAGCCGCTAAAGACGTTACCTGCGccc          >  1:18989422‑M1/9‑35 (MQ=255)
                           atCACATCAGCCGCTAAAGACGTTACCTGCGCCCg         >  1:19749865/1‑35 (MQ=255)
                           atCACATCAGCCGCTAAAGACGTTACCTGCGCCCg         >  1:18208892/1‑35 (MQ=255)
                           atCACATCAGCCGCTAAAGACGTTACCTGCGCCCg         >  1:11024751/1‑35 (MQ=255)
                           accccccCAGCCGCTAAAGACGTTACCTGCGCCCg         >  1:3307985‑M1/8‑35 (MQ=255)
                           accccccCAGCCGCTAAAGACGTTACCTGCGCCCg         >  1:17644781‑M1/8‑35 (MQ=255)
                            ccccccCAGCCGCTAAAGACGTTACCTGCGCCCgg        >  1:2216413‑M1/7‑35 (MQ=255)
                            ccccccCAGCCGCTAAAGACGTTACCTGCGCCCgg        >  1:20374650‑M1/7‑35 (MQ=255)
                            ccccacCAGCCGCTAAAGACGTTACCTGCGCCCgg        >  1:17128694‑M1/7‑35 (MQ=255)
                             cccccCAGCCGCTAAAGACGTTACCTGCGCCCggg       >  1:1609758‑M1/6‑35 (MQ=255)
                             cacaTCAGCCGCTAAAGACGTTACCTGCGCCCggg       >  1:7169291/1‑35 (MQ=255)
                             cacaTCAGCCGCTAAAGACGTTACCTGCGCCCggg       >  1:13044800/1‑35 (MQ=255)
                             cacaTCAGCCGCTAAAGACGTTACCTGCGCCCggg       >  1:15535658/1‑35 (MQ=255)
                               cccCAGCCGCTAAAGACGTTACCTGCGCCCGGGGc     >  1:6073460‑M1/4‑35 (MQ=255)
                               cccCAGCCGCTAAAGACGTTACCTGCGCCCGGGGc     >  1:15871758‑M1/4‑35 (MQ=255)
                               cccCAGCCGCTAAAGACGTTACCTGCGCCCGGGGc     >  1:16426131‑M1/4‑35 (MQ=255)
                               caTCAGCCGCTAAAGACGTTACCTGCGCCCGGGGc     >  1:16287776/1‑35 (MQ=255)
                                aTCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCg    >  1:7643001/1‑35 (MQ=255)
                                aTCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCg    >  1:18852713/1‑35 (MQ=255)
                                aTCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCg    >  1:9351968/1‑35 (MQ=255)
                                 tCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCgg   >  1:9076250/1‑35 (MQ=255)
                                 cCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCgg   >  1:867488‑M1/2‑35 (MQ=255)
                                  CAGCCGCTAAAGACGTTACCTGCGCCCGGGGcggg  <  1:12928036‑M1/35‑2 (MQ=255)
                                  CAGCCGCTAAAGACGTTACCTGCGCCCGGGGcggg  <  1:3069595‑M1/35‑2 (MQ=255)
                                  |                                  
CATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCGGT  >  REL606/2840667‑2840735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.