New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2064682 =77 (0.750)9 (0.110) 3/38 NT 10.8% coding (595/1218 nt) wcaC predicted glycosyl transferase
?REL606 = 3433062 88 (1.080)pseudogene (399/621 nt) yhfS putative enzyme; b3376_1

AGATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2064720‑2064682
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG  <  REL606/3433062‑3433029
                                                                         
AGATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCC                                        <  1:10731576/35‑1
AGATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCC                                        <  1:14944940/35‑1
 GATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCA                                       <  1:7573397/35‑1
 GATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCA                                       <  1:1245522/35‑1
 GATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCA                                       <  1:4371510/35‑1
 GATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCA                                       <  1:608716/35‑1
 GATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCA                                       <  1:14705217/35‑1
  ATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCcg                                      >  1:1461401/1‑33
  ATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAG                                      >  1:16035248/1‑35
  ATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAG                                      <  1:12136322/35‑1
  ATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAG                                      <  1:8686509/35‑1
  ATGCTGGCGCTGGGCTGTCAGTTTATTCCCCCCAG                                      <  1:9226326/35‑1
   TGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCccc                                     >  1:20376886/1‑32
    GCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAGCC                                    <  1:16356791/35‑1
    GCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAGCC                                    <  1:5266063/35‑1
                        cgATTTCCCCCAGCCGATTGCCGCCAGAGTGCTGG                <  1:7681432/33‑1
                        cgATTTCCCCCAGCCGATTGCCGCCAGAGTGCTGG                <  1:17351053/33‑1
                         gATTTTCCCCAGCCGATTGCCGCCAGAGTGCTGGA               <  1:10470975/34‑1
                         TATTTCCCCCAGCCGATTGCCGCCAGAGTGCTGGA               <  1:8336365/35‑1
                          tTTTCCCCCAGCCGATTGCCGCCAGAGTGCTGGAA              <  1:17052878/34‑1
                          gTTTCCCCCAGCCGATTGCCGCCAGAGAGCTGGAA              <  1:20059548/34‑1
                          ATTTCCCTCAGCCGATTGCCGCCAGAGTGCTGGAA              <  1:4639022/35‑1
                          ATTTCCCCCAGCCGATTGCAGCCAGAGTGCTGGAA              <  1:3248176/35‑1
                            TTCCCCCAGCCGATTGCCGCCAGAGTGCTGGAAGA            <  1:15953539/35‑1
                             TCCACCAGCCGATTGCCGCCAGAGTGCTGGAAGAG           <  1:4494686/35‑1
                              cctCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGG          <  1:7290745/32‑1
                               caCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGGC         <  1:13256304/33‑1
                               aaCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGGC         <  1:7886900/33‑1
                               CCCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGGC         <  1:20414309/35‑1
                                CCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGGCG        <  1:9357627/35‑1
                                CCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGGCG        <  1:14576504/35‑1
                                CCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGGCG        <  1:14221211/35‑1
                                  CAGCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCA      <  1:10925542/35‑1
                                  CAGCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCA      >  1:7506968/1‑35
                                   AGCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAA     >  1:20265990/1‑35
                                   AGCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAA     <  1:6316506/35‑1
                                   AGCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAA     >  1:19525889/1‑35
                                   AGCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAA     <  1:1716092/35‑1
                                    GCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAA    <  1:6281905/35‑1
                                    GCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAA    <  1:5561104/35‑1
                                    GCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAA    >  1:19575113/1‑35
                                     CCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAA   >  1:6136413/1‑35
                                     CCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAA   >  1:8009132/1‑35
                                     CCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAA   <  1:4138472/35‑1
                                     CCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAA   >  1:13137954/1‑35
                                     CCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAA   >  1:3141308/1‑35
                                     CCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAA   <  1:10215943/35‑1
                                      CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG  <  1:939283/35‑1
                                      CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG  >  1:5399197/1‑35
                                      CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG  >  1:3255900/1‑35
                                      CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG  >  1:19954320/1‑35
                                      CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG  >  1:15738189/1‑35
                                      CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG  >  1:15040921/1‑35
                                      CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG  >  1:10053085/1‑35
                                                                         
AGATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2064720‑2064682
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG  <  REL606/3433062‑3433029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.