New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 207313 =39 (0.380)6 (0.060) 3/44 NT 6.9% coding (1124/1149 nt) lpxB lipid‑A‑disaccharide synthase
?REL606 1513006 = 126 (1.340)coding (3736/3741 nt) narZ nitrate reductase 2 (NRZ), alpha subunit

Only 100 of 229 total aligned reads displayed.

AAGCACCATGCCGACTTGTGAACGGATTTTCATTTTTTCGCCTCCTGTACCTGATCGCGACCTTCATCA  >  REL606/1512972‑1513040
                                  |                                  
aaattcgatcattgtgctaactccagaacggcttt                                    >  1:5495060‑M2/35‑35 (MQ=255)
aaGCACCATTCCGACTTGTGAACGGATTTTCAttt                                    >  1:7052998/1‑35 (MQ=255)
aaGCACCATGCCGACTTGTGAACGGATTTTCAttt                                    >  1:19682721/1‑35 (MQ=40)
aaGCACCATGCCGACTTGTGAACGGATTTTCAttt                                    <  1:5968673/35‑1 (MQ=40)
aaGCACCATGCCGACTTGTGAACGGATTTTCAttt                                    <  1:9409928/35‑1 (MQ=40)
aaGCACCATGCCGACTTGTGAACGGATTTTCAttt                                    >  1:9217339/1‑35 (MQ=40)
aaGCACCATGCCGACTTGTGAACGGATTTTCAttt                                    <  1:2673811/35‑1 (MQ=40)
 aattcgatcattgtgctaactccagaacggctttt                                   >  1:11131682‑M2/34‑35 (MQ=255)
 aGCACCATGCCGACTTGTGAACGGATTTTCAtttt                                   >  1:18734935/1‑35 (MQ=38)
 aGCACCATGCCGACTTGTGAACGGATTTTCAtttt                                   <  1:1841878/35‑1 (MQ=38)
 aGCACCATGCCGACTTGTGAACGGATTTTCAtttt                                   >  1:16506917/1‑35 (MQ=38)
 aGCACCATGCCGACTTGTGAACGGATTTTCAtttt                                   >  1:1507775/1‑35 (MQ=38)
 aGCACCATGCCGACTTGTGAACGGATTTTCAtttt                                   <  1:15025284/35‑1 (MQ=38)
 aGCACCATGCCGACTTGTGAACGGATTTTCAtttt                                   >  1:3804419/1‑35 (MQ=38)
  gCACCATGCCGACTTGTTAACGGATTTTCAttttt                                  >  1:11753311/1‑35 (MQ=255)
  gCACCATGCCGACTTGTGAACGGATTTTCAttttt                                  <  1:11293009/35‑1 (MQ=40)
  gCACCATGCCGACTTGTGAACGGATTTTCAttttt                                  >  1:20128215/1‑35 (MQ=40)
  gCACCATGCCGACTTGTGAACGGATTTTCAttttt                                  <  1:11015539/35‑1 (MQ=40)
   ttcgatcattgtgctaactccagaacggctttttc                                 >  1:20510204‑M2/32‑34 (MQ=255)
   cACCATGCCGACTTGTGAACGGATTTTCAtttttt                                 >  1:14836676/1‑35 (MQ=255)
   cACCATGCCGACTTGTGAACGGATTTTCAtttttt                                 <  1:3335784/35‑1 (MQ=255)
    tcgatcattgtgctaactccagaacggctttttgc                                >  1:5096569‑M2/31‑33 (MQ=255)
    tcgatcattgtgctaactccagaacggctttttct                                >  1:14492731‑M2/31‑33 (MQ=255)
    tcgatcattgtgctaactccagaacggcttttgtt                                >  1:8901435‑M2/31‑32 (MQ=255)
    tcgatcattgtgctaactccagaacggcttTTTTc                                >  1:6461776‑M2/31‑35 (MQ=255)
    aCCATGCCGACTTGTGAACGGATTTTCATTTTTTc                                <  1:16869007/35‑1 (MQ=255)
    aCCATGCCGACTTGTGAACGGATTTTCATTTTTTc                                >  1:6588782/1‑35 (MQ=255)
     ccATGCCGACTTGTGAACGGATTTTCATTTTTTCg                               <  1:8009398/35‑1 (MQ=255)
     ccATGCCGACTTGTGAACGGATTTTCATTTTTTCg                               >  1:132458/1‑35 (MQ=255)
     ccATGCCGACTTGTGAACGGATTTTCATTTTTTCg                               >  1:2469800/1‑35 (MQ=255)
      cATGCCGACTTGTGAACGGATTTTCATTTTTTCGc                              <  1:19343055/35‑1 (MQ=255)
      cATGCCGACTTGTGAACGGATTTTCATTTTTTCGc                              <  1:1399220/35‑1 (MQ=255)
      cATGCCGACTTGTGAACGGATTTTCATTTTTTCGc                              >  1:12934164/1‑35 (MQ=255)
      cATGCCGACTTGTGAACGGATTTTCATTTTTTCGc                              >  1:19769955/1‑35 (MQ=255)
       aTGCCGACTTGTGAACGGATTTTCATTTTTTCGcc                             >  1:677826/1‑35 (MQ=255)
       aTGCCGACTTGTGAACGGATTTTCATTTTTTCGcc                             >  1:12792180/1‑35 (MQ=255)
       aTGCCGACTTGTGAACGGATTTTCATTTTTTCGcc                             <  1:12652774/35‑1 (MQ=255)
        tcattgtgctaactccagaacggcttTTTCCGcct                            >  1:8103527‑M2/27‑35 (MQ=255)
        tGCCGACTTGTGAACGGATTTTCATTTTTTCGcct                            <  1:5327553/35‑1 (MQ=255)
        tGCCGACTTGTGAACGGATTTTCATTTTTTCGcct                            <  1:19539748/35‑1 (MQ=255)
        tGCCGACTTGTGAACGGATTTTCATTTTTTCGcct                            <  1:15672092/35‑1 (MQ=255)
        tGCCGACTTGTGAACGGATTTTCATTTTTTCGcct                            <  1:2342836/35‑1 (MQ=255)
        tGCCGACTTGTGAACGGATTTTCATTTTTTCGcct                            >  1:694845/1‑35 (MQ=255)
         gCCGACTTGTGAACGGATTTTCATTTTTTCGcctc                           >  1:10648419/1‑35 (MQ=255)
         cattgtgctaactccagaacggcttTTTTCtcctg                           >  1:9497200‑M2/26‑34 (MQ=255)
           ttgtgctaactccagaacggcttTTTTCGcctcct                         >  1:4884831‑M2/24‑35 (MQ=255)
           cGACTTGTGTACGGATTTTCATTTTTTCGcctcct                         <  1:4133541/35‑1 (MQ=255)
           cGACTTGTGAACGGATTTTCATTTTTTCGcctcct                         >  1:17822697/1‑35 (MQ=255)
           cGACTTGTGAACGGATTTTCATTTTTTCGcctcct                         >  1:14377214/1‑35 (MQ=255)
           cGACTTGTGAACGGATTTTCATTTTTTCGcctcct                         >  1:11592700/1‑35 (MQ=255)
           agACTTGTGAACGGATTTTCATTTTTTCGcctcct                         <  1:15495273/34‑1 (MQ=255)
            gACTTGTGAACGGATTTTCATTTTTTCGCCTCCTg                        <  1:5623622/35‑1 (MQ=255)
             aCTTGTGAACGGATTTTCATTTTTTCGCCTCCTGt                       >  1:17547822/1‑35 (MQ=255)
             aCTTGTGAACGGATTTTCATTTTTTCGCCTCCTGt                       <  1:16193153/35‑1 (MQ=255)
             aCTTGTGAACGGATTTTCATTTTTTCGCCTCCTGt                       <  1:12694537/35‑1 (MQ=255)
               ttGTGAACGGATTTTCATTTTTTCGCCTCCTGTAc                     >  1:5767870/1‑35 (MQ=255)
               ttGTGAACGGATTTTCATTTTTTCGCCTCCTGTAc                     >  1:5998024/1‑35 (MQ=255)
                tgtgAACGGATTTTCATTTTTTCGCCTCCTGTAcc                    <  1:20109964/35‑1 (MQ=255)
                tgtgAACGGATTTTCATTTTTTCGCATCCTGTAcc                    <  1:9006401/35‑1 (MQ=255)
                 gtgAACGGATTTTCATTTTTTCGCCTCCTGTACCt                   <  1:19437308/35‑1 (MQ=255)
                 gtgAACGGATTTTCATTTTTTCGCCTCCTGTACCt                   <  1:5361903/35‑1 (MQ=255)
                 gtgAACGGATTTTCATTTTTTCGCCTCCTGTACCt                   <  1:14887485/35‑1 (MQ=255)
                  tgAACGGATTTTCATTTTTTCGCCTCCTGTACCTg                  <  1:4667080/35‑1 (MQ=255)
                  tgAACGGATTTTCATTTTTTCGCCTCCTGTACCTg                  <  1:18461551/35‑1 (MQ=255)
                  tgAACGGATTTTCATTTTTTCGCCTCCTGTACCTg                  >  1:7158443/1‑35 (MQ=255)
                  tgAACGGATTTTCATTTTTTCGCCTCCTGTACCTg                  >  1:10425118/1‑35 (MQ=255)
                   gAACGGATTTTCATTTTTTCGCCTCCTGTACCTGa                 <  1:9818832/35‑1 (MQ=255)
                   gAACGGATTTTCATTTTTTCGCCTCCTGTACCTGa                 >  1:176820/1‑35 (MQ=255)
                   gAACGGATTTTCATTTTTTCGCCTCCTGTACCTGa                 <  1:11868694/35‑1 (MQ=255)
                    aaCGGATTTTCATTTTTTCGCCTCCTGTACCTGAt                >  1:13478125/1‑35 (MQ=255)
                     aCGGATTTTCATTTTTTCGCCTCCTGTACCTGATc               >  1:15858302/1‑35 (MQ=255)
                     aCGGATTTTCATTTTTTCGCCTCCTGTACCTGATc               >  1:4496554/1‑35 (MQ=255)
                     aCGGATTTTCATTTTTTCGCCTCCTGTACCTGATc               >  1:13771730/1‑35 (MQ=255)
                     aCGGATTTTCATCTTTTCGCCTCCTGTACCTGATc               <  1:18241252/35‑1 (MQ=255)
                      cGGATTTTCATTTTTTCGCCTCCTGTACCTGATcg              <  1:8363261/35‑1 (MQ=255)
                      cGGATTTTCATTTTTTCGCCTCCTGTACCTGATcg              >  1:10165424/1‑35 (MQ=255)
                       ggATTTTCATTTTTTCGCCTCCTGTACCTGATcgc             <  1:2019027/35‑1 (MQ=255)
                       ggATTTTCATTTTTTCGCCTCCTGTACCTGATcgc             >  1:13590159/1‑35 (MQ=255)
                         aTTTTCATTTTTTCGCCTCCTGTACCTGATCGCGa           <  1:3108992/35‑1 (MQ=255)
                         aTTTTCATTTTTTCGCCTCCTGTACCTGATCGCGa           >  1:6121248/1‑35 (MQ=255)
                          ttttCATTTTTTCGCCTCCTGTACCTGATCGCGAc          >  1:8717782/1‑35 (MQ=255)
                          ttttCATTTTTTCGCCTCCTGTACCTGATCGCGAc          >  1:6027563/1‑35 (MQ=255)
                          ttttCATTTTTTCGCCTCCTGTACCTGATCGCGAc          <  1:3931560/35‑1 (MQ=255)
                          ttttCATTTTTTCGCCTCCTGTACCTGATCGCGAc          <  1:7714065/35‑1 (MQ=255)
                           tttCATTTTTTCGCCTCCTGTACCTGATCGCGAcc         <  1:6377187/35‑1 (MQ=255)
                           tttCATTTTTTCGCCTCCTGTACCTGATCGCGAcc         <  1:11329643/35‑1 (MQ=255)
                           tttCATTTTTTCGCCTCCTGTACCTGATCGCGAcc         <  1:7790533/35‑1 (MQ=255)
                            ttCATTTTTTCGCCTCCTGTACCTGATCGCGACCt        <  1:4604421/35‑1 (MQ=255)
                            ttCATTTTTTCGACTCCTGTACCTGATCGCGACCt        <  1:2591194/35‑1 (MQ=255)
                             tCATTTTTTCGCCTCCTGTACCTGATCGCGACCtt       <  1:18929754/35‑1 (MQ=255)
                             tCATTTTTTCGCCTCCTGTACCTGATCGCGACCtt       <  1:4320663/35‑1 (MQ=255)
                              cATTTTTTCGCCTCCTGTACCTGATCGCGACCTtc      >  1:15841330/1‑35 (MQ=255)
                                ttTTTTCGCCTCCTGTACCTGATCGCGACCTtcat    >  1:17136810‑M2/3‑35 (MQ=255)
                                ttTTTTCGCCTCCTGTACCTGATCGCGACCTtcat    >  1:1771158‑M2/3‑35 (MQ=255)
                                ttTTTTCGCCTCCTGTACCTGATCGCGACCTtcat    <  1:10212491‑M2/33‑1 (MQ=255)
                                  ttttCGCCTCCTGTACCTGATCGCGACCTtcatca  <  1:7264316/35‑1 (MQ=255)
                                  ttttCGCCTCCTGTACCTGATCGCGACCTtcatca  >  1:1668003/1‑35 (MQ=255)
                                  ttttCGCCTCCTGTACCTGATCGCGACCTtcatca  >  1:17615322/1‑35 (MQ=255)
                                  ttttCGCCTCCTGTACCTGATCGCGACCTtcatca  <  1:19804639/35‑1 (MQ=255)
                                  ttttCGCCTCCTGTACCTGATCGCGACCTtcatca  <  1:13194127/35‑1 (MQ=255)
                                  |                                  
AAGCACCATGCCGACTTGTGAACGGATTTTCATTTTTTCGCCTCCTGTACCTGATCGCGACCTTCATCA  >  REL606/1512972‑1513040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.