New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2216192 =62 (0.600)25 (0.310) 6/38 NT 27.2% coding (1142/1182 nt) setB lactose/glucose efflux system
?REL606 = 3911582 85 (1.040)coding (218/1551 nt) yifB predicted bifunctional enzyme and transcriptional regulator

Only 100 of 184 total aligned reads displayed.

CACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAT  >  REL606/2216158‑2216226
                                  |                                  
cACGCTGTGTTCTGGTTTGCGATGGTGATGATTAt                                    <  1:6238779/35‑1 (MQ=255)
cACGCTGTGTTCTGGTTTGCGATGGTGATGATTAt                                    <  1:9402850/35‑1 (MQ=255)
agatcagctggagccaggttgatggtgattttttt                                    >  1:14402591‑M1/35‑35 (MQ=255)
agatcagctggagccaggttgatggtgattttttt                                    <  1:6011967‑M1/1‑1 (MQ=255)
agatcagctggagccaggttgatggtgattttttt                                    <  1:8050893‑M1/1‑1 (MQ=255)
agatcagctggagccaggttgatggtgattttttt                                    >  1:10695383‑M1/35‑35 (MQ=255)
agatcagctggagccaggttgatggtgattttttt                                    <  1:964487‑M1/1‑1 (MQ=255)
agatcagctggagccaggttgatggcgattttttt                                    <  1:19773184‑M1/1‑1 (MQ=255)
 gatcagctggagccaggttgatggtgattttttTc                                   >  1:12297785‑M1/34‑35 (MQ=255)
 gatcagctggagccaggttgatggtgattttttTc                                   >  1:797215‑M1/34‑35 (MQ=255)
 aCGCTGTGTTCTGGTTTGCGATGGTGATGATTATc                                   >  1:7979581/1‑35 (MQ=255)
 aCGCTGTGTTCTGGTTTGCGATGGTGATGATTATc                                   <  1:6703225/35‑1 (MQ=255)
 aCGCTGTGTTCTGGTTTGCGATGGTGATGATTATc                                   >  1:3948737/1‑35 (MQ=255)
 aCGCTGTGTTCTGGTTTGCGATGGTGATGATTATc                                   <  1:8707342/35‑1 (MQ=255)
  cGCTGTGTTCTGGTTTGCGATGGTGATGATTATCg                                  <  1:18675580/35‑1 (MQ=255)
  cGCTGTGTTCTGGTTTGCGATGGTGATGATTATCg                                  >  1:13432382/1‑35 (MQ=255)
  cGCTGTGTTCTGGTTTGCGATGGTGATGATTATCg                                  >  1:3442029/1‑35 (MQ=255)
  atcagctggagccaggttgatggtgattttttTCg                                  <  1:7322589‑M1/3‑1 (MQ=255)
  atcagctggagccaggttgatggtgattttttTCg                                  <  1:18435123‑M1/3‑1 (MQ=255)
   tcagctggagccaggttgattgtgattttttTCGc                                 <  1:16643655‑M1/4‑1 (MQ=255)
   tcagctggagccaggttgatggtgattttttTCGc                                 >  1:2312938‑M1/32‑35 (MQ=255)
   tcagctggagccaggttgatggtgattttttTCGc                                 >  1:5919155‑M1/32‑35 (MQ=255)
   gCTGTGTTCTGGTTTGCGATGGTGATGATTATCGc                                 >  1:18140484/1‑35 (MQ=255)
   gCTGTGTTCTGGTTTGCGATGGTGATGATTATCGc                                 >  1:5747440/1‑35 (MQ=255)
   gCTGTGTTCTGGTTTGCGATGGTGATGATTATCGc                                 >  1:13125245/1‑35 (MQ=255)
   gCTGTGTTCTGGTTTGCGATGGTGATGATTATCGc                                 >  1:8029300/1‑35 (MQ=255)
    cagctggagccaggttgatggtgattttttTCGcc                                >  1:15505987‑M1/31‑35 (MQ=255)
    cagctggagccaggttgatggtgattttttTCGcc                                >  1:9277491‑M1/31‑35 (MQ=255)
    cagctggagccaggttgatggtgattttttTCGcc                                <  1:8585542‑M1/5‑1 (MQ=255)
    cTGTGTTCTGGTTTGCGATGGTGATGATTATCGcc                                >  1:4373999/1‑35 (MQ=255)
    cTGTGTTCTGGTTTGCGATGGTGATGATTATCGcc                                <  1:14568157/35‑1 (MQ=255)
    cTGTGTTCTGGTTTGCGATGGTGATGATTATCGcc                                >  1:17310428/1‑35 (MQ=255)
    cTGTGTTCTGGTTTGCGATGGTGATGATTATCGca                                >  1:1585994/1‑34 (MQ=255)
     tgtgTTCTGGTTTGCGATTGTGATGATTATCGCCa                               >  1:14163977/1‑35 (MQ=255)
     tgtgTTCTGGTTTGCGATGGTGATGATTATCGccc                               >  1:11901605/1‑34 (MQ=255)
     tgtgTTCTGGTTTGCGATGGTGATGATTATCGCCa                               <  1:9847506/35‑1 (MQ=255)
     tgtgTTCTGGTTTGCGATGGTGATGATTATCGCCa                               <  1:713245/35‑1 (MQ=255)
      gtgtTCTGGTTTGCGATGGTGATGATTATCGCCAc                              >  1:16869786/1‑35 (MQ=255)
         ttCTGGTTTGAGATGGTGATGATTATCGCAActct                           <  1:17933095/35‑1 (MQ=37)
           cTGGTTTGCGATGGTGATGATTATCGCCACTCTGt                         >  1:14607503/1‑35 (MQ=255)
            tGGTTTGCGATGGTGATGATTATCGCCACTCTGtt                        >  1:17363432/1‑35 (MQ=255)
            tGGTTTGCGATGGTGATGATTATCGCCACTCTGtt                        >  1:12852260/1‑35 (MQ=255)
            tGGTTTGCGATGGTGATGATTATCGCCACTCTGtt                        >  1:11917403/1‑35 (MQ=255)
             ggTTTGCGATGGTGATGATTATCGCCACTCTGttt                       >  1:4244241/1‑35 (MQ=255)
             ggTTTGCGATGGTGATGATTATCGCCACTCTGttt                       >  1:13623391/1‑35 (MQ=255)
             ggTTTGCGATGGTGATGATTATCGCCACTCTGttt                       >  1:4029582/1‑35 (MQ=255)
              gTTTGCGATGGTGATGATTATCGCCACTCTGtttt                      >  1:16081271/1‑35 (MQ=255)
               tttGCGATGGTGATGATTATCGCCACTCTGTTTTg                     >  1:9816695/1‑35 (MQ=255)
               tttGCGATGGTGATGATTATCGCCACTCTGTTTTg                     >  1:6811180/1‑35 (MQ=255)
                ttGCGATGGTGATGATTATCGCCACTCTGTTTTGc                    >  1:18322773/1‑35 (MQ=255)
                ttGCGATGGTGATGATTATCGCCACTCTGTTTTGc                    >  1:12595760/1‑35 (MQ=255)
                    gATGGTGATGATTATCGCCACTCTGTTTTGCTTAc                >  1:19862196/1‑35 (MQ=255)
                    gATGGTGATGATTATCGCCACTCTGTTTTGCTTAc                >  1:17986729/1‑35 (MQ=255)
                    gATGGTGATGATTATCGCCACTCTGTTTTGCTTAc                >  1:11649803/1‑35 (MQ=255)
                    gATGGTGATGATTATCGCCACTCTGTTTTGCTTAc                >  1:18023464/1‑35 (MQ=255)
                     ttggtgatgttttTCGCCACTCTGTTTTGCTTACt               >  1:1376070‑M1/14‑35 (MQ=255)
                     gtggttattttttTCGCCACTCTGTTTTGCTTACt               >  1:4978654‑M1/14‑35 (MQ=255)
                     aTGGTGATGATTATCGCCACTCTGTTTTGCTTACt               >  1:16695101/1‑35 (MQ=255)
                      tGGTGATGATTATCGCCACTCTGTTTTGCTTACTg              >  1:19509233/1‑35 (MQ=255)
                      tGGTGATGATTATCGCCACTCTGTTTTGCTTACTg              >  1:7486155/1‑35 (MQ=255)
                      tGGTGATGATTATCGCCACTCTGTTTTGCTTACTg              >  1:316990/1‑35 (MQ=255)
                       ggtgtttttttTCGCCACTCTGTTTTGCTTACTGc             >  1:5308582‑M1/12‑35 (MQ=255)
                        gtgtttttttTCGCCACTCTGTTTTGCTTACTGCg            >  1:4687927‑M1/11‑35 (MQ=255)
                        gtgtttttttTCGCCACTCTGTTTTGCTTACTGCg            >  1:5396241‑M1/11‑35 (MQ=255)
                         tgtttttttTCGCCACTCTGTTTTGCTTACTGCgg           >  1:3042381‑M1/10‑35 (MQ=255)
                         tgtttttttTCGCCACTCTGTTTTGCTTACTGCgg           >  1:2362885‑M1/10‑35 (MQ=255)
                         tgaagaTTATCGCCACTCTGTTTTGCTTACTGCgg           >  1:16093649/1‑35 (MQ=255)
                         ggagtttttTCGCCACTCTGTTTTGCTTACTGCgg           >  1:558547‑M1/10‑35 (MQ=255)
                          gatgatTATCGCCACTCTGTTTTGCTTACTGCGGa          >  1:13381374/1‑35 (MQ=255)
                          gatgatTATCGCCACTCTGTTTTGCTTACTGCGGa          >  1:10927087/1‑35 (MQ=255)
                          gatgatTATCGCCACTCTGTTTTGCTTACTGCGGa          >  1:17194985/1‑35 (MQ=255)
                          gatgatTATCGCAACTCTGTTTTGCTTACTGCGGa          <  1:19371191/35‑1 (MQ=255)
                           attttttTCGCCACTCTGTTTTGCTTACTGCGGAt         >  1:2931501‑M1/8‑35 (MQ=255)
                           atgatTATCGCCACTCTGTTTTGCTTACTGCGGAt         >  1:130019/1‑35 (MQ=255)
                           atgatTATCGCCACTCTGTTTTGCTTACTGCGGAt         >  1:6485889/1‑35 (MQ=255)
                            ttttttTCGCCACTCTGTTTTGCTTACTGCGGAtt        >  1:3697724‑M1/7‑35 (MQ=255)
                            ttttttTCGCCACTCTGTTTTGCTTACTGCGGAtt        >  1:12332625‑M1/7‑35 (MQ=255)
                            ttttttTCGCCACTCTGTTTTGCTTACTGCGGAtt        >  1:13833679‑M1/7‑35 (MQ=255)
                            ttttttTCGCCACTCTGTTTTGCTTACTGCGGAtt        >  1:12005343‑M1/7‑35 (MQ=255)
                            ttttttTCGCCACTCTGTTTTGCTTACTGCGGAtt        >  1:6042406‑M1/7‑35 (MQ=255)
                            tgatTATCGCCACTCTGTTTTGCTTACTGCGGAtt        >  1:14208856/1‑35 (MQ=255)
                            tgatTATCGCCACTCTGTTTTGCTTACTGCGGAtt        >  1:13469514/1‑35 (MQ=255)
                             tttttTCGCCACTCTGTTTTGCTTACTGCGGATTa       >  1:17257692‑M1/6‑35 (MQ=255)
                             gatTATCTCCACTCTGTTTTGCTTACTGCGGATTa       >  1:4820125/1‑35 (MQ=255)
                             gatTATCTCCACTCTGTTTTGCTTACTGCGGATTa       >  1:8361929/1‑35 (MQ=255)
                             gatTATCGCCACTCTGTTTTGCTTACTGCGGATTa       >  1:10699348/1‑35 (MQ=255)
                             gatTATCGCCACTCTGTTTTGCTTACTGCGGATTa       >  1:17569826/1‑35 (MQ=255)
                             gatTATCGCCACTCTGTTTTGCTTACTGCGGATTa       >  1:5896433/1‑35 (MQ=255)
                               ttATCGCCACTCTGTTTTGCTTACTGCGGATTaaa     >  1:12792373/1‑35 (MQ=255)
                                 tTCGCCACTCTGTTTTGCTTACTGCGGATTAAAGa   >  1:2383593‑M1/2‑35 (MQ=255)
                                 tTCGCCACTCTGTTTTGCTTACTGCGGATTAAAGa   >  1:8113712‑M1/2‑35 (MQ=255)
                                 tTCGCCACTCTGTTTTGCTTACTGCGGATTAAAGa   >  1:19235242‑M1/2‑35 (MQ=255)
                                 aTCGCCACTCTGTTTTGCTTACTGCGGATTAAAGa   >  1:11570128/1‑35 (MQ=255)
                                 aTCGCCACTCTGTTTTGCTTACTGCGGATTAAAGa   >  1:11006925/1‑35 (MQ=255)
                                 aTCGCCACTCTGTTTTGCTTACTGCGGATTAAAGa   >  1:6895412/1‑35 (MQ=255)
                                  TCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAt  <  1:15679635‑M1/35‑1 (MQ=255)
                                  TCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAt  >  1:19886845‑M1/1‑35 (MQ=255)
                                  TCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAt  <  1:2880224‑M1/35‑1 (MQ=255)
                                  TCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAt  >  1:18539506‑M1/1‑35 (MQ=255)
                                  TCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAt  >  1:14973679‑M1/1‑35 (MQ=255)
                                  |                                  
CACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTAAAGAT  >  REL606/2216158‑2216226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.