New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1095862 =53 (0.520)3 (0.050) 3/28 NT 10.4% coding (274/1509 nt) putP proline:sodium symporter
?REL606 1585457 = 21 (0.350)coding (495/666 nt) marC predicted transporter

TTATTGTTGTATTCGGTATGCACACGCAACCGCCCCGCCACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1095905‑1095862
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccaccagGAAAAAGATCAGCGGCGGCGCAACCATCAGTACC  >  REL606/1585457‑1585490
                                                                              
TTATTGTTGTATTCGGTATGCACACGCAACCGCCC                                             >  1:15739305/1‑35
TTATTGTTGTATTCGGTATGCACACGCAACCGCCC                                             >  1:13395026/1‑35
TTATTGTTGTATTCGGTATGCACACGCAACCGCCC                                             >  1:7591096/1‑35
TTATTGTTGTATTCGGTATGCACACGCAACCGCCC                                             >  1:14395316/1‑35
 TATTGTTGTATTCGGTATGCACACGCAACCGCCCC                                            >  1:7646030/1‑35
  ATTGTTGTATTCGGTATGCACACGCAACCGCCCCG                                           >  1:2579711/1‑35
  ATTGTTGTATTCGGTATGCACACGCAACCGCCCCG                                           >  1:4852982/1‑35
  ATTGTTGTATTCGGTATGCACACGCAACCGCCCCG                                           >  1:13510587/1‑35
   TTGTTGTATTCGGTATGCACACGCAACCGCCCCGC                                          >  1:10502832/1‑35
   TTGTTGTATTCGGTATGCACACGCAACCGCCCCGC                                          >  1:4956228/1‑35
    TGTTGTATTCGGTATGCACACGCAACCGCCCCGCC                                         >  1:2436227/1‑35
    TGTTGTATTCGGTATGCACACGCAACCGCCCCGCC                                         >  1:8452830/1‑35
    TGTTGTATTCGGTATGCACACGCAACCGCCCCGCC                                         >  1:10979692/1‑35
     GTTGTATTCGGTATGCACACGCAACCGCCCCGCCA                                        >  1:17079848/1‑35
     GTTGTATTCGGTATGCACACGCAACCGCCCCGCCA                                        >  1:18462000/1‑35
      TTGTATTCGTTATGCACACGCAACCGCCCCGCCAC                                       >  1:14541158/1‑35
        GTATTCGGTATGCACACGCAACCGCCCCGCCACCA                                     >  1:5954389/1‑35
        GTATTCGGTATGCACACGCAACCGCCCCGCCACCA                                     >  1:14680159/1‑35
        GTATTCGGTATGCACACGCAACCGCCCCGCCACCA                                     >  1:18890363/1‑35
                          CAACCCCCCCGCCACCAGGAAAAAGATCAGCGGCG                   <  1:4683427/35‑1
                           AACCCCCCCGCCACCAGGAAAAAGATCAGCGGCGG                  <  1:7920503/35‑1
                            ACCCCCCCGCCACCAGGAAAAAGATCAGCGGCGGC                 <  1:8492430/35‑1
                             cccCCCCGCCACCAGGAAAAAGATCAGCGGCGGCG                <  1:8565600/32‑1
                             accCCCCGCCACCAGGAAAAAGATCAGCGGCGGCG                <  1:2207295/32‑1
                              ccCCCCGCCACCAGGAAAAAGATCAGCGGCGGCGC               <  1:303035/33‑1
                              ccCCCCGCCACCAGGAAAAAGATCAGCGGCGGCGC               <  1:4393222/33‑1
                                CCCCGCCACCAGGAAAAAGATCAGCGGCGGCGCAA             <  1:14390364/35‑1
                                 CCCGCCACCAGGAAAAAGATCAGCGGCGGCGCAAC            <  1:10089573/35‑1
                                   CGCCACCAGGAAAAAGATCAGCGGCGGCGCAGCCA          <  1:20301505/35‑1
                                   CGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCA          <  1:14405645/35‑1
                                   CGCCACCAGGAAAAAGATCAGCGGCGGCGAAACCA          <  1:13096617/35‑1
                                    GCCACCAGGAAAAGGATCAGCGGCGGCGCAACCAT         <  1:1235556/35‑1
                                    GCCACCAGGAAAAAGATCAGCGGCGGCGCAACCAT         <  1:14666411/35‑1
                                    GCCACCAGGAAAAAGATCAGCGGCGGCGCAACCAT         <  1:14051809/35‑1
                                        CCAGGAAAAAGATCAGCGGCGGCGCAGCCATCAGT     <  1:16332014/35‑1
                                         CAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTA    <  1:12950621/35‑1
                                           GGAAAAAGATCAGCGGCGGCGCAACCATCAGTACC  <  1:14201917/35‑1
                                                                              
TTATTGTTGTATTCGGTATGCACACGCAACCGCCCCGCCACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1095905‑1095862
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccaccagGAAAAAGATCAGCGGCGGCGCAACCATCAGTACC  >  REL606/1585457‑1585490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.