New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3944627 =101 (0.980)9 (0.120) 3/34 NT 13.8% intergenic (+16/‑131) proM/aslB tRNA‑Pro/predicted regulator of arylsulfatase activity
?REL606 = 4275759 41 (0.560)coding (189/690 nt) yjcO hypothetical protein

Only 100 of 207 total aligned reads displayed.

AATCCTCTCTCGCCGACCAATTTTGAACCCCGCTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCA  >  REL606/3944593‑3944661
                                  |                                  
cgccagcagcgcgcaggcatcagcatcaccgctgt                                    <  1:8115334‑M1/1‑1 (MQ=255)
cgccagcagcgcgcaggcatcagcatcaccgctgt                                    <  1:7913655‑M1/1‑1 (MQ=255)
 gccagcagcgcgcaggcatcagcatcaccgctgTc                                   <  1:9203497‑M1/2‑1 (MQ=255)
 gccagcagcgcgcaggcatcagcatcaccgctgTc                                   <  1:3578181‑M1/2‑1 (MQ=255)
 gccagcagcgcgcaggcatcagcatcaccgctgTc                                   <  1:4822544‑M1/2‑1 (MQ=255)
 aTCCTCTCTCGCCGACCAATTTTGAGCCCCGCTTc                                   <  1:14341826/35‑1 (MQ=255)
 aTCCTCTCTCGCCGACCAATTTTGAACCCCGCTTc                                   <  1:17022666/35‑1 (MQ=255)
 aTCCTCTCTCGCCGACCAATTTTGAACCCCGCTTc                                   <  1:18505208/35‑1 (MQ=255)
 aTCCTCTCTCGCCGACCAATTTTGAACCCCGCTTc                                   <  1:19050958/35‑1 (MQ=255)
 aTCCTCTCTCGCCGACCAATTTTGAACCCCGCTTc                                   >  1:3104858/1‑35 (MQ=255)
 aTCCTCTCTCGCCGACCAATTTTGAACCCCGCTTc                                   <  1:3726054/35‑1 (MQ=255)
 aTCCTCTCTCGCCGACCAATTTTGAACCCCGCTTc                                   <  1:5032296/35‑1 (MQ=255)
 aTCCTCTCTCGCCGACCAATTTTGAACCCCGCTTc                                   <  1:10950676/35‑1 (MQ=255)
 aTCCTATCTCGCCGACCAATTTTGAACCCCGCTTc                                   <  1:18447054/35‑1 (MQ=255)
  tCCTCTCTCGCCGACCAATTTTGAACCCCGCTTcg                                  <  1:11781237/35‑1 (MQ=255)
  tCCTCTCTCGCCGACCAATTTTGAACCCCGCTTcg                                  <  1:3850029/35‑1 (MQ=255)
  tCCTCTCTCGCCGACCAATTTTGAACCCCGCTTcg                                  <  1:14611276/35‑1 (MQ=255)
  tCCTCTCTCGCCGACCAATTTTGAACCCCGCTTcg                                  <  1:19219426/35‑1 (MQ=255)
  ccagcagcgcgcaggcatcagcatcaccgctgTcg                                  >  1:6007488‑M1/33‑35 (MQ=255)
   cgccagcgcgcaggcatcagcatcaccgctgTcgg                                 >  1:6548834‑M1/32‑35 (MQ=255)
   ccTCTCTCGCCGACCAATTTTGAACCCCGCTTcgg                                 <  1:4886010/35‑1 (MQ=255)
   ccTCTCTCGCCGACCAATTTTGAACCCCGCTTcgg                                 <  1:11978588/35‑1 (MQ=255)
   ccTCTCTCGCCGACCAATTTTGAACCCCGCTTcgg                                 <  1:1464690/35‑1 (MQ=255)
   ccTCTCTCGCCGACCAATTTTGAACCCCGCTTcgg                                 <  1:3066696/35‑1 (MQ=255)
   cagcagcgcgcaggcatcagcatcaccgctgTcgg                                 <  1:10150317‑M1/4‑1 (MQ=255)
    ctctctCGCCGACCAATTTTGAACCCCGCTTcggc                                <  1:7370264/35‑1 (MQ=255)
    ctctctCGCCGACCAATTTTGAACCCCGCTTcggc                                <  1:2632401/35‑1 (MQ=255)
    ctctctCGCCGACCAATTTTGAACCCCGCTTaggc                                <  1:6805361/35‑1 (MQ=255)
    agcagcgcgcaggcatcagcatcaccgctgTcggc                                <  1:16218538‑M1/5‑1 (MQ=255)
    agcagcgcgcaggcatcagcatcaccgctgTcggc                                >  1:987633‑M1/31‑35 (MQ=255)
    agcagcgcgcaggcatcagcatcaccgctgTcggc                                >  1:13538694‑M1/31‑35 (MQ=255)
     tctctcGCCGACCAATTTTGAACCCCGCTTcggcg                               >  1:6294047/1‑35 (MQ=255)
     tctctcGCCGACCAATTTTGAACCCCGCTTcggcg                               >  1:17722736/1‑35 (MQ=255)
      cagcgcgcaggcatcagcatcaccgctgTcggcgg                              <  1:9137551‑M1/7‑1 (MQ=255)
      cagcgcgcaggcatcagcatcaccgctgTcggcgg                              <  1:18247608‑M1/7‑1 (MQ=255)
       tctcGCCGACCAATTTTGAACCCCGCTTCGGCggg                             <  1:15864223/35‑1 (MQ=255)
       tctcGCCGACCAATTTTGAACCCCGCTTCGGCggg                             <  1:11167980/35‑1 (MQ=255)
       tctcGCCGACCAATTTTGAACCCCGCTTCGGCggg                             <  1:13114209/35‑1 (MQ=255)
       tctcGCCGACCAATTTTGAACCCCGCTTCGGCggg                             >  1:8910107/1‑35 (MQ=255)
       tctcGCCGACCAATTTTGAACCCCGCTTCGGCggg                             <  1:6640722/35‑1 (MQ=255)
       agcgcgcaggcatcagcatcaccgctgTCGGCggg                             <  1:10252237‑M1/8‑1 (MQ=255)
        gcgcgcaggcatcagcatcaccgctgTCGGcgggc                            <  1:19750599‑M1/9‑2 (MQ=255)
        ctcGCCGACCAATTTTGAACCCCGCTTCGGCgtgg                            >  1:956289/1‑35 (MQ=255)
         tcGCCGACCAATTTTGAACCCCGCTTCGGCggggg                           >  1:9368342/1‑34 (MQ=255)
         tcGCCGACCAATTTTGAACCCCGCTTCGGCGGGGt                           <  1:10699162/35‑1 (MQ=255)
         cgcgcaggcatcagcatcaccgctgTCGGCGGGGt                           <  1:613562‑M1/10‑1 (MQ=255)
           gCCGACCAATTTTGAACCCCGCTTCGGCGGGGgtt                         >  1:14893356/1‑35 (MQ=255)
           cgcaggcatcagcatcaccgctgTCGGCGGGgttc                         <  1:7552102‑M1/12‑2 (MQ=255)
           accGACCAATTTTGAACCCCGCTTCGGCGGGGttt                         <  1:9101376/34‑1 (MQ=255)
            gcaggcatcagcatcaccgctgTCGGCGGGGtttt                        <  1:13050930‑M1/13‑1 (MQ=255)
            ccGACCAATTTTGAACCCCGCTTCGGCGGGGgttt                        >  1:4075467/1‑35 (MQ=255)
            ccGACCAATTTTGAACCCCGCTTCGGCGGGGgttt                        >  1:13686464/1‑35 (MQ=255)
            ccGACCAATTTTGAACCCCGCTTCGGCGGGGgttt                        >  1:3439259/1‑35 (MQ=255)
            ccGACCAATTTTGAACCCCGCTTCGGCGGGGgttt                        >  1:20504181/1‑35 (MQ=255)
             cGACCAATTTTGAACCCCGCTTCGGCGGGGttttt                       <  1:8966949/35‑1 (MQ=255)
              gACCAATTTTGAACCCCGCTTCGGCGGGGtttttt                      <  1:12451686/35‑1 (MQ=255)
              aggcatcagcatcaccgctgTCGGCGGGGtttttt                      <  1:6409818‑M1/15‑1 (MQ=255)
                ccAATTTTGAACCCCGCTTCGGCGGGGGTTTTTGt                    >  1:15630357/1‑35 (MQ=255)
                 catcagcatcaccgctgTCGGCGgggtttttttgc                   <  1:11548488‑M1/18‑4 (MQ=255)
                  aaTTTTGAACCCCGCTTCGGCGGGGTTTTTTGttt                  >  1:10474811/1‑35 (MQ=255)
                  aaTTTTGAACCCCGCTTCGGCGGGGGTTTTTGttt                  >  1:19697226/1‑35 (MQ=255)
                   aTTTTGAACCCCGCTTCGGCGGGGTTTTTTGtttt                 <  1:2511209/35‑1 (MQ=255)
                   aTTTTGAACCCCGCTTCGGCGGGGTTTTTTGtttt                 <  1:19547027/35‑1 (MQ=255)
                   aTTTTGAACCCCGCTTCGGCGGGGTTTTTTGtttt                 <  1:17474824/35‑1 (MQ=255)
                   aTTTTGAACCCCGCTTCGGCGGGGGTTTTTGtttt                 >  1:18349241/1‑35 (MQ=255)
                   aTTTTGAACCCCGCTTCGGCGGGGGTTTTTGtttt                 >  1:5702697/1‑35 (MQ=255)
                    ttttGAACCCCGCTTCGGCGGGGTTTTTTGTTTTc                <  1:12185996/35‑1 (MQ=255)
                    ttttGAACCCCGCTTCGGCGGGGGTTTTTGttttt                >  1:14240561/1‑34 (MQ=255)
                    ttttGAACCCCGCTTCGGCGGGGGTTTTTGTTTTc                >  1:10264906/1‑35 (MQ=255)
                      ttGAACCCCGCTTCGGCGGGGTTTTTTGTTTTCtg              <  1:9545075/35‑1 (MQ=255)
                      ttGAACCCCGCTTCGGCGGGGGTTTTTGTTTTCtg              >  1:11667603/1‑35 (MQ=255)
                       tGAACCCCGCTTCGGCGGGGTTTTTTGTTTTCtgt             >  1:16033795/1‑35 (MQ=255)
                       tGAACCCCGCTTCGGCGGGGGTTTTTGTTTTCtgt             >  1:9225146/1‑35 (MQ=255)
                       tGAACCCCGCTTCGGCGGGGGTTTTTGTTTTCtgt             >  1:5223075/1‑35 (MQ=255)
                        gAACCCCGCTTCGGCGGGGTTTTTTGTTTTCtgtg            <  1:1006140/35‑1 (MQ=255)
                        gAACCCCGCTTCGGCGGGGTTTTTTGTTTTCtgtg            <  1:14578369/35‑1 (MQ=255)
                          aCCCCGCTTCGGCGGGGTTTTTTGTTTTCTGTGCa          <  1:5889840/35‑1 (MQ=255)
                          aCCCCGCTTCGGCGGGGTTTTTTGTTTTCTGTGCa          <  1:4216144/35‑1 (MQ=255)
                          aCCCCGCTTCGGCGGGGTTTTTTGTTTTCTGTGCa          <  1:892790/35‑1 (MQ=255)
                          aCCCCGCTTCGGCGGGGGTTTTTGTTTTCTGTGCa          >  1:16550496/1‑35 (MQ=255)
                          aCCCCGCTTCGGCGGGGGTTTTTGTTTTCTGTGCa          >  1:11233915/1‑35 (MQ=255)
                          aCCCCGCTTCGGCGGGGGTTTTTGTTTTCTGTGCa          >  1:12853257/1‑35 (MQ=255)
                            cccGCTTCGGCGGGGTTTTTTGTTTTCTGTGCAtt        <  1:19173100/35‑1 (MQ=255)
                            cccGCTTCGGCGGGGGTTTTTGTTTTCTGTGCAtt        >  1:202573/1‑35 (MQ=255)
                            cccGCTTCGGCGGGGGTTTTTGTTTTCTGTGCAtt        >  1:8622842/1‑35 (MQ=255)
                             ccGCTTCGGCGGGGTTTTTTGTTTTCTGTGCAttt       <  1:11421878/35‑1 (MQ=255)
                             ccGCTTCGGCGGGGGTTTTTGTTTTCTGTGCAttt       >  1:1799230/1‑35 (MQ=255)
                              cGCTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTc      <  1:2380402/35‑1 (MQ=255)
                              cGCTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTc      <  1:16330651/35‑1 (MQ=255)
                              cGCTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTc      <  1:15317106/35‑1 (MQ=255)
                              cGCTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTc      <  1:1736998/35‑1 (MQ=255)
                               gCTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTCg     <  1:781296/35‑1 (MQ=255)
                               gCTTCGGCGGGGTTTTTTGTTTTATGTGCATTTCg     <  1:9003515/35‑1 (MQ=255)
                                cTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGt    <  1:9720514/35‑1 (MQ=255)
                                cTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGt    <  1:16461498/35‑1 (MQ=255)
                                cTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGt    <  1:13843453/35‑1 (MQ=255)
                                cTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGt    <  1:13506022/35‑1 (MQ=255)
                                 ttCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTc   <  1:2848256/35‑1 (MQ=255)
                                  TCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCa  >  1:16792549‑M1/1‑35 (MQ=255)
                                  TCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCa  >  1:15503019‑M1/1‑35 (MQ=255)
                                  |                                  
AATCCTCTCTCGCCGACCAATTTTGAACCCCGCTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCA  >  REL606/3944593‑3944661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.