New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2530544 | 66 (0.640) | 11 (0.120) | 5/42 | NT | 18.2% | coding (1232/1668 nt) | hyfG | hydrogenase 4, subunit |
? | REL606 | 3367495 = | 41 (0.460) | intergenic (‑81/+26) | yhdN/rplQ | hypothetical protein/50S ribosomal protein L17 |
GCAATATTCCAAAAACACTGTTTACCTTTACCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2530508‑2530544 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGCGGGTTTTTTTA > REL606/3367495‑3367508 GCAATATTCCAAAAACACTGTTTACCTTTACCTGC > 1:19189664/1‑35 GCAATATTCCAAAAACACTGTTTACCTTTACCGGC > 1:9632550/1‑35 GCAATATTCCAAAAACACTGTTTACCTTTACCGGC > 1:13132959/1‑35 GCAATATTCCAAAAACACTGTTTACCTTTACCGGC > 1:2478014/1‑35 GCAATATTCCAAAAACACTGTTTACCTTTACCGGC > 1:8607543/1‑35 GCAATATTCCAAAAACACTGTTTACCTTTACCGGC < 1:5359070/35‑1 GCAATATTCCAAAAACACTGTTTACCTTTACCGGC > 1:2800254/1‑35 GCAATATTCCAAAAACACTGTTTACCTTTACCGGC < 1:1940020/35‑1 GCAATATTCCAAAAACACTGTTTACCTTTACCGGC < 1:19349160/35‑1 GCAATATTCCAAAAACACTGTTTACCTTTACCAGC > 1:20233843/1‑35 CAATATTCCAAAAACACTGTTTACCTTTACCGGCG < 1:11947253/35‑1 CAATATTCCAAAAACACTGTTTACCTTTACCGGCG < 1:8700781/35‑1 CAATATTCCAAAAACACTGTTTACCTTTACCGGCG > 1:15239864/1‑35 CAATATTCCAAAAACACTGTTTACCTTTACCGGCG < 1:20253811/35‑1 CAATATTCCAAAAACACTGTTTACCTTTACCGGCG < 1:15931880/35‑1 AATATTCCAAAAACACTGTTTACCTTTACCGGCGG > 1:2718530/1‑35 AATATTCCAAAAACACTGTTTACCTTTACCGGCGG > 1:5327479/1‑35 AATATTCCAAAAACACTGTTTACCTTTACCGGCGG > 1:16355210/1‑35 AATATTCCAAAAACACTGTTTACCTTTACCGGCGG < 1:13159698/35‑1 ATATTCCAAAAACACTGTTTACCTTTACCGGCGGG > 1:3097882/1‑35 ATATTCCAAAAACACTGTTTACCTTTACCGGCGGG > 1:18236943/1‑35 ATATTCCAAAAACACTGTTTACCTTTACCGGCGGG > 1:17161321/1‑35 ATATTCCAAAAACACTGTTTACCTTTACCGGCGGG > 1:7756812/1‑35 TATTCCAAAAACACTGTTTACCTTTACCGGCGGGc > 1:3303624/1‑34 TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG > 1:38785/1‑35 TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG > 1:4440412/1‑35 TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG > 1:9975651/1‑35 TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG > 1:13093636/1‑35 TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG > 1:2600791/1‑35 TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG > 1:19648369/1‑35 TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG > 1:18970392/1‑35 ATTCCAAAAACACTGTTTACCTTTACCGGCGGGGg > 1:17670330/1‑34 TTCCAAAAACACTGTTTACCTTTACCGGCGGGGgg > 1:15732245/1‑33 TCCAAAAACACTGTTTACCTTTACCGGCGGGGGGG > 1:16011278/1‑35 TCCAAAAACACTGTTTACCTTTACCGGCGGGGGGG > 1:18331714/1‑35 CAAAAACACTGTTTACCTTTACCGGCGGGGGGGGg > 1:5486297/1‑34 CAAAAACACTGTTTACCTTTACCGGCGGGGGGGGg > 1:2637853/1‑34 AAAAACACTGTTTACCTTTACCGGCGGGGGGGGTT > 1:10296251/1‑35 AAAACACTGTTTACCTTTACCGGCGGGGGGGGTTT > 1:18643198/1‑35 AAAACACTGTTTACCTTTACCGGCGGGGGGGGTTT > 1:1231938/1‑35 AAACACTGTTTACCTTTACCGGCGGGGGGGGTTTT > 1:5469835/1‑35 ACACTGTTTACCTTTACCGGCGGGGGGGGTTTTTT > 1:9087393/1‑35 CACTGTTTACCTTTACCGGCGGGGGGGGTTTTTTc > 1:15435451/1‑34 CACTGTTTACCTTTACCGGCGGGGGGGGTTTTTTT > 1:7519609/1‑35 ACTGTTTACCTTTACCGGCGGGGGGGGTTTTTTTc > 1:4099871/1‑34 ACTGTTTACCTTTACCGGCGGGGGGGGTTTTTTTc > 1:18464954/1‑34 GCAATATTCCAAAAACACTGTTTACCTTTACCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2530508‑2530544 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGCGGGTTTTTTTA > REL606/3367495‑3367508 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |