New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 42237 | 147 (1.430) | 9 (0.100) | 4/42 | NT | 5.9% | pseudogene (740/885 nt) | caiB | crotonobetainyl‑CoA:carnitineCoA‑transferase; b0038_1 |
? | REL606 | 2742547 = | 160 (1.780) | coding (1555/1827 nt) | hycC | NADH dehydrogenase subunit N |
Only 100 of 307 total aligned reads displayed.
GAACGCGATGGCAAACGATCGCCTTTGCAAATCGCCATAATGATGAATGGCAGCAGCGGGCAGGCAATC > REL606/2742513‑2742581 | gAACGTGATGGCAAACGATCGCCTTTGCAAATCGc > 1:2733043/1‑35 (MQ=255) gAACGCGATGGCAAACGATCGCCTTTGCAAATCGc > 1:15979221/1‑35 (MQ=255) gAACGCGATGGCAAACGATCGCCTTTGCAAATCGc > 1:1527031/1‑35 (MQ=255) gAACGCGATGGCAAACGATCGCCTTTGCAAATCGc < 1:19465289/35‑1 (MQ=255) aaCGCGATTGCAAACGATCGCCTTTGCAAATCGcc > 1:7554125/1‑35 (MQ=255) aaCGCGATGGCAAACGATCGCCTTTGCAAATCGcc > 1:10936420/1‑35 (MQ=255) aaCGCGATGGCAAACGATCGCCTTTGCAAATCGcc < 1:13078480/35‑1 (MQ=255) aCGCGATGGCAAACGATCGCCTTTGCAAATCGCCa > 1:11173734/1‑35 (MQ=255) aCGCGATGGCAAACGATCGCCTTTGCAAATCGCCa < 1:8211798/35‑1 (MQ=255) aCGCGATGGCAAACGATCGCCTTTGCAAATCGCCa < 1:6298489/35‑1 (MQ=255) aCGCGATGGCAAACGATCGCCTTTGCAAATCGCCa < 1:2418107/35‑1 (MQ=255) cgcgATGGCAAACGATCGCCTTTGCAAATCGCCAt > 1:6608663/1‑35 (MQ=255) ncgATGGCAAACGATCGCCTTTGCAAATCGCCATa > 1:20597052/2‑35 (MQ=255) cgATGGCAAACGATCGCCTTTGCAAATCGCCATaa > 1:4352670/1‑35 (MQ=255) cgATGGCAAACGATCGCCTTTGCAAATCGCCATaa > 1:3080645/1‑35 (MQ=255) cgATGGCAAACGATCGCCTTTGCAAATCGCCATaa > 1:7030295/1‑35 (MQ=255) gATGGCAAACGATCGCCTTTGCAAATCGCCATGat > 1:4750525/1‑35 (MQ=255) gATGGCAAACGATCGCCTTTGCAAATCGCCATAat > 1:20186387/1‑35 (MQ=255) gATGGCAAACGATCGCCTTTGCAAATCGCCATAat > 1:17984804/1‑35 (MQ=255) gATGGCAAACGATCGCCTTTGCAAATCGCCATAat > 1:9493633/1‑35 (MQ=255) tGGCAAACGATCGCCTTTGCAAATCGCCATAatga > 1:9265415/1‑35 (MQ=255) ggCAAACGATCGCCTTTGCAAATCGCCATAatgat > 1:16159031/1‑35 (MQ=255) ggCAAACGATCGCCTTTGCAAATCGCCATAatgat > 1:6115117/1‑35 (MQ=255) ggCAAACGATCGCCTTTGCAAATCGCCATAatgat > 1:5043813/1‑35 (MQ=255) gCAAACGATCGCCTTTTCAAATCGCCATAatgatg > 1:4048050/1‑35 (MQ=255) gCAAACGATCGCCTTTGCAAATCGCCATAatgatg > 1:12657169/1‑35 (MQ=255) gCAAACGATCGCCTTTGCAAATCGCCATAatgatg > 1:16846425/1‑35 (MQ=255) cAAACGATCGCCTTTGCAAATCGCCATAAtgatga > 1:1785280/1‑35 (MQ=255) cAAACGATCGCCTTTGCAAATCGCCATAAtgatga > 1:8524201/1‑35 (MQ=255) cAAACGATCGCCTTTGCAAATCGCCATAAtgatga > 1:18321477/1‑35 (MQ=255) aaaCGATCGCCTTTGCAAATCGCCATAATGATGaa > 1:4773935/1‑35 (MQ=255) aaaCGATCGCCTTTGCAAATCGCCATAATGATGaa > 1:6750378/1‑35 (MQ=255) aaaCGATCGCCTTTGCAAATCGCCATAATGATGaa > 1:7751051/1‑35 (MQ=255) aaaCGATCGCCTTTGCAAATCGCCATAATGATGaa > 1:18831941/1‑35 (MQ=255) aaCGATCGCCTTTGCAAATCGCCATAATGATGAAt > 1:15800673/1‑35 (MQ=255) aaCGATCGCCTTTGCAAATCGCCATAATGATGAAt > 1:7844575/1‑35 (MQ=255) aaCGATCGCCTTTGCAAATCGCCATAATGATGAAt > 1:16678382/1‑35 (MQ=255) aCGATCGCCTTTGCAAATCGCCATAATGATGAATg > 1:12226417/1‑35 (MQ=255) aCGATCGCCTTTGCAAATCGCCATAATGATGAATg > 1:10377885/1‑35 (MQ=255) aCGATCGCCTTTGCAAATCGCCATAATGATGAATg > 1:10020279/1‑35 (MQ=255) cGATCGCCTTTGCAAATCGCCATAATGATGAAttg > 1:1169971/1‑33 (MQ=255) cGATCGCCTTTGCAAATCGCCATAATGATGAATgg > 1:16887157/1‑35 (MQ=255) cGATCGCCTTTGCAAATCGCCATAATGATGAATgg > 1:12840819/1‑35 (MQ=255) cGATCGCCTTTGCAAATCGCCATAATGATGAATgg > 1:19813126/1‑35 (MQ=255) gATCGCCTTTGCAAATCGCCATAATGATGAATGgc > 1:3553590/1‑35 (MQ=255) gATCGCCTTTGCAAATCGCCATAATGATGAATGgc > 1:20471614/1‑35 (MQ=255) gATCGCCTTTGCAAATCGCCATAATGATGAATGgc > 1:19403322/1‑35 (MQ=255) gATCGCCTTTACAAATCGCCATAATGATGAATGgc > 1:3681599/1‑35 (MQ=255) gtCGCTTTTAAAATTCGCCATAATGATGAATGgca < 1:1873697/34‑1 (MQ=16) aTCGCCTTTGCAAATCGCCATAATGATGAATGgca > 1:4001955/1‑35 (MQ=255) tCGCCTTTGCAAATCGCCATAATGATGAATGgcag > 1:9675104/1‑35 (MQ=255) tCGCCTTTGCAAATCGCCATAATGATGAATGgcag > 1:15603374/1‑35 (MQ=255) tCGCCTTTGCAAATCGCCATAATGATGAATGgcag > 1:13495435/1‑35 (MQ=255) cGCCTTTGCAAATCGCCATAATGATGAATGgcagc > 1:2548475/1‑35 (MQ=255) gCCTTTTAAATTCGCCATAATGATGAATGgcagca < 1:19737960/35‑1 (MQ=21) gCCTTTGCAAATCGCCATAATGATGAATTgcagca > 1:14634873/1‑35 (MQ=255) gCCTTTGCAAATCGCCATAATGATGAATGgcagca > 1:14474270/1‑35 (MQ=255) gCCTTTGCAAATCGCCATAATGATGAATGgcagca > 1:16475547/1‑35 (MQ=255) ccTTTGCAAATCGCCATAATGATGAATGGcagcag > 1:20312863/1‑35 (MQ=255) ccTTTGCAAATCGCCAT‑ATGATGAATGGCagcagc > 1:157271/1‑35 (MQ=37) ccTTTGAAATTCGCCATAATGATGAATGGcagcag < 1:12464355/35‑1 (MQ=37) ccTGTGAAATTCGCCATAATGATGAATGGcagcag < 1:10518497/35‑1 (MQ=25) ttttgaaattcgCCATAATGATGAATGGCagcagc < 1:10732423‑M2/23‑1 (MQ=255) cTTTGCAAATCGCCATAATGATGAATGGCagcagc > 1:6502635/1‑35 (MQ=255) cTTTGCAAATCGCCATAATGATGAATGGCagcagc > 1:14062809/1‑35 (MQ=255) cTTTGCAAATCGCCATAATGATGAATGGCagcagc > 1:17274723/1‑35 (MQ=255) cTTTGCAAATCGCCATAATGATGAATGGCagcagc > 1:11539143/1‑35 (MQ=255) tttgaaattcgCCATAATGATGAATGGCAGCAGCg < 1:16193461‑M2/24‑1 (MQ=255) tttGTAAATCGCCATAATGATGAATGGCAGCAGCg < 1:4599310/35‑1 (MQ=255) tttGCAAATCGCCATAATGATGAATGTCAGCAGCg > 1:17653527/1‑35 (MQ=255) tttGCAAATCGCCATAATGATGAATGGCAGCAGCg > 1:12566730/1‑35 (MQ=255) tttGCAAATCGCCATAATGATGAATGGCAGCAGCg > 1:7577729/1‑35 (MQ=255) tttGCAAATCGCCATAATGATGAATGGCAGCAGCg > 1:664000/1‑35 (MQ=255) tttGCAAATCGCCATAATGATGAATGGCAGCAGCg > 1:3438340/1‑35 (MQ=255) tGCAAATCGCCATAATGATGAATGGCAGCAGCggg > 1:15165058/1‑35 (MQ=255) gCAAATCGCCATAATGATGAATGGCAGCAGCGtgc > 1:2598338/1‑35 (MQ=255) gCAAATCGCCATAATGATGAATGGCAGCAGCGggc > 1:13863767/1‑35 (MQ=255) cAAATCGCCATAATGATGAATGGCAGCAGCGggca > 1:13157216/1‑35 (MQ=255) aattcgCCATAATGATGAATGGCAGCAGCGggcag < 1:3874168‑M2/29‑1 (MQ=255) aaaTCGCCATAATGATGAATGGCAGCAGCGggcag > 1:8124501/1‑35 (MQ=255) attcgCCATAATGATGAATGGCAGCAGCGggcagg < 1:16439675‑M2/30‑1 (MQ=255) attcgCCATAATGATGAATGGCAGCAGCGggcagg < 1:15013642‑M2/30‑1 (MQ=255) aaTCGCCATAATGATGAATGGCAGGAGCGgggagg > 1:18642373/1‑35 (MQ=37) aaTCGCCATAATGATGAATGGCAGCAGCGggcagg > 1:12069588/1‑35 (MQ=255) tcgCCATAATGATGAATGGCAGCAGCGggcaggca < 1:11289865‑M2/32‑1 (MQ=255) tcgCCATAATGATGAATGGCAGCAGCGggcaggca > 1:8424072‑M2/4‑35 (MQ=255) tCGCCATAATGATGAATGGCAGCCGCGgggaggca > 1:5810519/1‑35 (MQ=37) cgCCATAATGATGAATGGCAGCAGCGGGGAGGCaa > 1:17014804‑M2/3‑35 (MQ=255) cgCCATAATGATGAATGGCAGCAGCGGGCAGGCaa > 1:2906942‑M2/3‑35 (MQ=255) cgCCATAATGATGAATGGCAGCAGCGGGCAGGCaa < 1:16783929‑M2/33‑1 (MQ=255) gCCATAATGATGAATGGCAGCAGCGGGCAGGcaaa > 1:7369878‑M2/2‑34 (MQ=255) gCCATAATGATGAATGGCAGCAGCGGGCAGGGAAt > 1:19025149‑M2/2‑35 (MQ=255) gCCATAATGATGAATGGCAGCAGCGGGCAGGCAAt < 1:14199146‑M2/34‑1 (MQ=255) gCCATAATGATGAATGGCAGCAGCGGGCAGGCAAt > 1:14541621‑M2/2‑35 (MQ=255) gCCATAATGATGAATGGCAGCAGCGGGCAGGCAAt > 1:9026311‑M2/2‑35 (MQ=255) gCCATAATGATGAATGGCAGCAGCGGGCAGGCAAt < 1:3221829‑M2/34‑1 (MQ=255) gCCATAATGATGAATGGCAGCAGCGGGCAGGCAAt < 1:17450893‑M2/34‑1 (MQ=255) gCCATAATGACGAATGGCAGCAGCGGGCAGGCAAt > 1:5451252‑M2/2‑35 (MQ=255) ccATAATGATGAATGGCAGCAGCGGGCAGGCAATc < 1:12314421/35‑1 (MQ=255) ccATAATGATGAATGGCAGCAGCGGGCAGGCAATc > 1:8757382/1‑35 (MQ=255) | GAACGCGATGGCAAACGATCGCCTTTGCAAATCGCCATAATGATGAATGGCAGCAGCGGGCAGGCAATC > REL606/2742513‑2742581 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |