New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1204666 = | 70 (0.680) | 9 (0.120) | 4/36 | NT | 11.7% | coding (481/1461 nt) | phoQ | sensory histidine kinase in two‑compoent regulatory system with PhoP |
? | REL606 | 3975303 = | 83 (1.080) | coding (677/801 nt) | yigL | predicted hydrolase |
Only 100 of 168 total aligned reads displayed.
GGGATGAACGATGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGT > REL606/3975269‑3975337 | gggATGAACGATGCCGAAATGCTGTCGATGGCggg > 1:5848374/1‑35 (MQ=255) gggATGAACGATGCCGAAATGCTGTCGATGGCggg > 1:19313136/1‑35 (MQ=255) gggATGAACGATGCCGAAATGCTGTCGATGGCggg < 1:10873231/35‑1 (MQ=255) gggATGAACGATGCCGAAATGCTGTCGATGGCggg > 1:17489070/1‑35 (MQ=255) gggATGAACGATGCCGAAATGCTGTCGATGGCggg > 1:16878043/1‑35 (MQ=255) gacgacgacgcggagatgacccactnggtggcggg > 1:16418714‑M2/35‑35 (MQ=255) gacgacgacgcggagatgacccactcggtggcggg > 1:8281808‑M2/35‑35 (MQ=255) gacgacgacgcggagatgacccactcggtggcggg > 1:5747865‑M2/35‑35 (MQ=255) gacgacgacgcggagatgacccactcggtggcggg > 1:14993815‑M2/35‑35 (MQ=255) gATGAACGATGCCGAAATGCTGTCGATGGCGGGGa < 1:1738789/35‑1 (MQ=255) gacgacgcggagatgacccactcggtggcggGGaa > 1:4223237‑M2/32‑35 (MQ=255) gacgacgcggagatgacccactcggtggcggGGaa > 1:7663864‑M2/32‑35 (MQ=255) aTGAACGATGCCGAAATGCTGTCGATGGCggggga > 1:20588820/1‑33 (MQ=255) aTGAACGATGCCGAAATGCTGTCGATGGCggggga > 1:10530790/1‑33 (MQ=255) aTGAACGATGCCGAAATGCTGTCGATGGCGGGGaa < 1:17403789/35‑1 (MQ=255) aTGAACGATGCCGAAATGCTGTCGATGGCGGGGaa > 1:7278639/1‑35 (MQ=255) aTGAACGATGCCGAAATGCTGTCGATGGCGGGGaa < 1:19822307/35‑1 (MQ=255) tGAACGATGCCGAAATGCTGTCGATGGCGGGGaaa > 1:16322115/1‑35 (MQ=255) tGAACGATGCCGAAATGCTGTCGATGGCGGGGaaa < 1:13359798/35‑1 (MQ=255) tGAACGATGCCGAAATGCTGTCGATGGCGGGGaaa < 1:1516997/35‑1 (MQ=255) acgacgcggagatgacccactcggtggcggGGaaa > 1:19707923‑M2/31‑35 (MQ=255) gAACGATGCCGAAATGCTGTCGATGGCGGGGAAAg > 1:6841220/1‑35 (MQ=255) cgacgcggagatgacccactcggtggcggggaacg > 1:10985356‑M2/30‑33 (MQ=255) cgacgcggagatgacccactcggtggcggGGAAAg > 1:4835612‑M2/30‑35 (MQ=255) aaCGATGCCGAAATGCTGTCGATGGCTGGGAAAgg > 1:4062094/1‑35 (MQ=255) aaCGATGCCGAAATGCTGTCGATGGCGGGGGAAgg > 1:6068426/1‑35 (MQ=255) aaCGATGCCGAAATGCTGTCGATGGCGGGGGAAgg > 1:16144866/1‑35 (MQ=255) aaCGATGCCGAAATGCTGTCGATGGCGGGGAAAgg > 1:15233470/1‑35 (MQ=255) aaCGATGCCGAAATGCTGTCGATGGCGGGGAAAgg > 1:3531356/1‑35 (MQ=255) acgcggagatgacccactcggtggcggGGAAAGGc > 1:6127730‑M2/28‑35 (MQ=255) aCGATGCCGAAATGCTGTCGATGGCGGGGGAAGGc > 1:9277401/1‑35 (MQ=255) aCGATGCCGAAATGCTGTCGATGGCGGGGGAAGGc > 1:11981785/1‑35 (MQ=255) aCGATGCCGAAATGCTGTCGATGGCGGGGAAAGGc < 1:10386725/35‑1 (MQ=255) aCGATGCCGAAATGCTGTCGATGGCGGGGAAAGGc < 1:15727061/35‑1 (MQ=255) aCGATGCCGAAATGCTGCCGATGGCGGGGAAAGGc > 1:18710310/1‑35 (MQ=255) cgcggagatgacccactcggtggcggGGaaagtac > 1:7814621‑M2/27‑32 (MQ=255) cgcggagatgacccactcggtggcggGGAAAGTCt > 1:4942248‑M2/27‑35 (MQ=255) cgcggagatgacccactcggtggcggGGAAAGGCt > 1:18593356‑M2/27‑35 (MQ=255) cGATGCCGAAATGCTGTCGATGGCGTGGAAAGGCt > 1:1545665/1‑35 (MQ=255) cGATGCCGAAATGCTGTCGATGGCGGGGAAAGGCt < 1:20137968/35‑1 (MQ=255) cGATGCCGAAATGCTGTCGATGGCGGGGAAAGGCt < 1:10827026/35‑1 (MQ=255) cGATGCCGAAATGCTGTCGATGGCGGGGAAAGGCt > 1:3947568/1‑35 (MQ=255) cGATGCCGAAATGCTGTCGATGGCGGGGAAAGGCt > 1:7448048/1‑35 (MQ=255) gATGCCGAAATGCTGTCGATGGCGGGGGAAGGCTg > 1:4299843/1‑35 (MQ=255) gATGCCGAAATGCTGTCGATGGCGGGGAAAGGCTg < 1:18986716/35‑1 (MQ=255) gATGCCGAAATGCTGTCGATGGCGGGGAAAGGCTg > 1:11569866/1‑35 (MQ=255) gATGCCGAAATGCTGTCGATGGCGGGGAAAGGCTg < 1:10092518/35‑1 (MQ=255) gATGCCGAAATGCTGTCGATGGCGGGGAAAGGCTg > 1:10044270/1‑35 (MQ=255) tGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCa < 1:14324194/35‑1 (MQ=255) gCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCAt > 1:8346838/1‑35 (MQ=255) ccGAAATGCTGTCGATTGCGGGGAAAGGCTGCAtt > 1:12217335/1‑35 (MQ=255) ccGAAATGCTGTCGATGGCGGGGAAAGGCTGCAtt < 1:17188755/35‑1 (MQ=255) ccGAAATGCTGTCGATGGCGGGGAAAGGCTGCAtt > 1:3540664/1‑35 (MQ=255) ccGAAATGCTGTCGATGGCGGGGAAAGGCTGCAtt < 1:3129256/35‑1 (MQ=255) ccGAAATGCTGTCGATGGCGGGGAAAGGCTGCAtt < 1:13599290/35‑1 (MQ=255) cGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTa > 1:4630612/1‑35 (MQ=255) cGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTa > 1:19835347/1‑35 (MQ=255) cGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTa < 1:16800254/35‑1 (MQ=255) cGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTa > 1:13981108/1‑35 (MQ=255) gAAATGCTGTCGATGGCGGGGAAAGGCTGCATTAt > 1:19717865/1‑35 (MQ=255) aaaTGCTGTCGATGGCGGGGAAAGGCTGCATTATg < 1:2012532/35‑1 (MQ=255) aaaTGCTGTCGATGGCGGGGAAAGGCTGCATTATg < 1:2241384/35‑1 (MQ=255) aaaTGCTGTCGATGGCGGGGAAAGGCTGCATTATg > 1:8616115/1‑35 (MQ=255) aTGCTGTCGATGGCGGGGAAAGGCTGCATTATggg < 1:12600019/35‑1 (MQ=255) aTGCTGTCGATGGCGGGGAAAGGCTGCATTATggg < 1:13970303/35‑1 (MQ=255) gCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCa < 1:6734520/35‑1 (MQ=255) cTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAg < 1:9932380/35‑1 (MQ=255) cTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAg < 1:8895695/35‑1 (MQ=255) cTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAg > 1:3038661/1‑35 (MQ=255) cTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAg > 1:18477152/1‑35 (MQ=255) tGTCGATGGCGGGGAAAGGCTGCATTATGGGccgg > 1:1222906/1‑32 (MQ=255) tGTCGATGGCGGGGAAAGGCTGCATTATGGGccgg > 1:4079178/1‑32 (MQ=255) tGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGt < 1:15596134/35‑1 (MQ=255) tGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGt < 1:18010986/35‑1 (MQ=255) gTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTg < 1:1110880/35‑1 (MQ=255) gTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTg < 1:19148240/35‑1 (MQ=255) gTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTg < 1:20097350/35‑1 (MQ=255) gTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTg < 1:19439177/35‑1 (MQ=255) tCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgc > 1:17839626/1‑35 (MQ=255) tCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgc < 1:6124758/35‑1 (MQ=255) tCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgc > 1:4026474/1‑35 (MQ=255) tCGATGGCGGGGAAAGGCTGCATTATGGGCAGGgc > 1:15881822/1‑35 (MQ=255) cGATGGCGGGGAAAGGCTGCATTATGGGCAGTgcg < 1:15208429/35‑1 (MQ=255) cGATGGCGGGGAAAGGCTGCATTATGGGCAGGgcg > 1:16091805/1‑35 (MQ=255) ggcggGGAAAGGCTGCATTATGGGCAGGGCGCAcc > 1:6679585‑M2/6‑35 (MQ=255) gcggGGAAAGGCTGCATTATGGGCAGTGCGCACCa < 1:18292087‑M2/31‑1 (MQ=255) gcggGGAAAGGCTGCATTATGGGCAGTGCGCACCa < 1:2507790‑M2/31‑1 (MQ=255) gcggGGAAAGGCTGCATTATGGGCAGTGCGCACCa < 1:5235670‑M2/31‑1 (MQ=255) gcggGGAAAGGCTGCATTATGGGCAGGGCGCACCa > 1:12720598‑M2/5‑35 (MQ=255) cggGGAAAGGCTGCATTATGGGCAGTGCGCACCAg > 1:3327994‑M2/4‑35 (MQ=255) cggGGAAAGGCTGCATTATGGGCAGTGCGCACCAg < 1:4943085‑M2/32‑1 (MQ=255) cggGGAAAGGCTGCATTATGGGCAGGGCGCACCAg > 1:15502400‑M2/4‑35 (MQ=255) ggGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc > 1:16020055‑M2/3‑35 (MQ=255) ggGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc < 1:19891746‑M2/33‑1 (MQ=255) ggGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc > 1:13849343‑M2/3‑35 (MQ=255) gGGAAAGGCTGCATTATGGGCAGTGCGCACCCGCg > 1:11220249‑M2/2‑35 (MQ=255) gGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCg < 1:20255355‑M2/34‑1 (MQ=255) gGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCg < 1:14548721‑M2/34‑1 (MQ=255) ggAAAGGCTGCATTATGGGCAGTGCGCACCAGCGt < 1:11742788/35‑1 (MQ=255) ggAAAGGCTGCATTATGGGCAGTGCGCACCAGCGt < 1:9981104/35‑1 (MQ=255) | GGGATGAACGATGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGT > REL606/3975269‑3975337 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |