New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2703325 =45 (0.440)9 (0.120) 3/36 NT 16.6% coding (158/1185 nt) ygaX predicted transporter
?REL606 = 4091236 57 (0.740)coding (461/600 nt) yiiQ hypothetical protein

Only 100 of 136 total aligned reads displayed.

ACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCT  >  REL606/4091202‑4091270
                                  |                                  
aCCTTCTGTCTCGGTGTAATAACGTTTGTTTTTcc                                    <  1:18508844/35‑1 (MQ=255)
aCCTTCTGTCTCGGTGTAATAACGTTTGTTTTTcc                                    <  1:3213828/35‑1 (MQ=255)
 ccTTCTGTCTCGGTGTAATAACGTTTGTTTTTtcc                                   >  1:16494940/1‑35 (MQ=255)
 ccTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCc                                   >  1:80193‑M2/1‑34 (MQ=255)
 ccTTCTGTCTCGGTGTAATAACGTTTGGTTTTCCc                                   <  1:8689685‑M2/35‑2 (MQ=255)
 ccTTCTGTCTCGGGGTAATAACGTTTGGTTTTtcc                                   >  1:1886852/1‑35 (MQ=25)
  cTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCcc                                  <  1:2755148‑M2/35‑3 (MQ=255)
   ttCTGTCTCGGTGTAATAACGTTTGTTTTTCCccg                                 >  1:15153154‑M2/1‑32 (MQ=255)
   ttCTGTCTCGGTGTAATAACGTTTGTTTTTCCccg                                 >  1:18177123‑M2/1‑32 (MQ=255)
     cTGTCTCGGTGTAATAACGTTTGTTTTTCCccgcc                               >  1:2862860‑M2/1‑30 (MQ=255)
      tGTCTCGGTGTAATACCGTTTTTTTTTCCccgccg                              <  1:1604349/35‑1 (MQ=25)
      tGTCTCGGTGTAATAACGTTTGTTTTTCCccgccg                              >  1:8294369‑M2/1‑29 (MQ=255)
        tctcGGTGTAATAACGTTTGTTTTTCCCCGCCGtt                            >  1:3756708/1‑35 (MQ=255)
         ctcGGTGTAATAACGTTTGTTTTTCCCCGCCGTta                           >  1:9320472/1‑35 (MQ=255)
         ctcGGTGTAATAACGTTTGTTTTTCCCCGCCGTta                           >  1:4595512/1‑35 (MQ=255)
         ctcGGTGTAATAACGTTTGTTTTTCCCCGCCGTta                           >  1:19603512/1‑35 (MQ=255)
           cGGTGTAATAACGTTTGTTTTTCCCCGCCGTtagt                         >  1:10028591/1‑35 (MQ=255)
           cGGTGTAATAACGTTTGTTTTTCCCCGCCGTtagt                         >  1:18641215/1‑35 (MQ=255)
           cGGTGTAATAACGTTTGTTTTTCCCCGCCGTtagt                         >  1:20351346/1‑35 (MQ=255)
           cGGTGTAATAACGTTTGTTTTTCCCCGCCGTtagt                         >  1:12180371/1‑35 (MQ=255)
           cGGTGTAATAACGTTTGTTTTTCCACGCCGTtagt                         <  1:186418/35‑1 (MQ=255)
            ggTGTAATAACGTTTGTTTTTCCCCGCCGTtagta                        >  1:1890009/1‑35 (MQ=255)
             gtgtAATAACGTTTGTTTTTCCCCGCCGTtagtag                       >  1:8591459/1‑35 (MQ=255)
             gtgtAATAACGTTTGTTTTTCCCCGCCGTtagtag                       >  1:17205018/1‑35 (MQ=255)
             gtgtAATAACGTTTGTTTTTCCCCGCCGTtagaag                       >  1:11920648/1‑35 (MQ=255)
              tgtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGc                      >  1:2673792/1‑35 (MQ=255)
              tgtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGc                      >  1:4484030/1‑35 (MQ=255)
              tgtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGc                      >  1:9705378/1‑35 (MQ=255)
              tgtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGc                      >  1:13797264/1‑35 (MQ=255)
              tgtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGc                      >  1:14198642/1‑35 (MQ=255)
              tgtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGc                      >  1:14716611/1‑35 (MQ=255)
               gtAATAACGTTTGTTTTTCCCCGCCGTtagtaggg                     >  1:505852/1‑33 (MQ=255)
               gtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCg                     >  1:231426/1‑35 (MQ=255)
                taataaCTTTTGTTTTTCCCCGCCGTTAGTAGCGa                    >  1:10099578/1‑35 (MQ=255)
                taataaCGTTTGTTTTTCCCCGCCGTTAGTAGCGa                    >  1:11166394/1‑35 (MQ=255)
                taataaCGTTTGTTTTTCCCCGCCGTTAGTAGCGa                    >  1:16350298/1‑35 (MQ=255)
                taataaCGTTTGTTTTTCCCCGCCGTTAGTAGCGa                    >  1:3803977/1‑35 (MQ=255)
                  ataaCGTTTGTTTTTCCCCGCCGTTAGTAGCGACt                  >  1:3437376/1‑35 (MQ=255)
                  ataaCGTTTGTTTTTCCCCGCCGTTAGTAGCGACt                  >  1:1346385/1‑35 (MQ=255)
                    aaCGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGc                >  1:18101156/1‑35 (MQ=255)
                    aaCGTTTGTTTTTCCCCGCCGTTAGTAGCGAATGc                >  1:19604852/1‑35 (MQ=255)
                     aCGTTTGTTTTTCCCCGCCGTTAGTAGCGCCTGcc               >  1:4780964/1‑34 (MQ=255)
                     aCGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCa               >  1:6326829/1‑35 (MQ=255)
                     aCGTTTGTTTTTCCCCGCCGTTAGTAGCGACCGcc               >  1:18998592/1‑34 (MQ=255)
                     aCGTTTGTTTTTCCCCGCCGTTAGCAGCGACTGCa               >  1:18898643/1‑35 (MQ=255)
                      cGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAg              >  1:16013759/1‑35 (MQ=255)
                       tttttttttTCCccgccgcgcaattgggctatgca             >  1:1472507‑M2/2‑12 (MQ=255)
                       ttttgtttCCCCCCGCCGTTAGTAGCGACTGCAGt             <  1:9106012/34‑1 (MQ=37)
                       gtttgtttTTCCCCGCCGTTAGTAGCGACTGCCGt             >  1:17460722/1‑35 (MQ=255)
                       gtttgtttTTCCCCGCCGTTAGTAGCGACTGCAGt             >  1:2498263/1‑35 (MQ=255)
                        tttgtttCCCCCCGCCGTTAGTAGCGACTGCAGtt            <  1:8400951/35‑1 (MQ=37)
                         tttttttcCCCCGCCGTTAGTAGCGACTGCAGttt           <  1:10951516/32‑1 (MQ=37)
                         ttgtttTTCCCCGCCGTTAGTAGCGACTGCCGttt           >  1:1758492/1‑35 (MQ=255)
                         ttgtttCCCCCCGCCGTTAGTAGCGACTGCAGttt           <  1:20251066/35‑1 (MQ=37)
                          ttttttcCCCCGCCGTTAGTAGCGACTGCAGtttt          <  1:5887483/33‑1 (MQ=38)
                          tgtttTTCCCCGCCGTTAGTAGCGACTGCAGtttt          >  1:9468727/1‑35 (MQ=255)
                          tgtttTTCCCCGCCGTTAGTAGCGACTGCAGtttt          >  1:5980087/1‑35 (MQ=255)
                           ttttgtcCccgccgcgcaattgggctatgcagcag         >  1:14116283‑M2/2‑8 (MQ=255)
                           gtttTTCCCCGCCGTTAGTAGCGACTGGAGttttt         >  1:13476897/1‑35 (MQ=255)
                           gtttTTCCCCGCCGTTAGTAGCGACTGCAGctttt         >  1:2836306/1‑35 (MQ=255)
                            tttttCCccgccgcgcaattgggctatgcagcagg        >  1:8486668‑M2/1‑7 (MQ=255)
                            tttttCCCCGCCGTTAGTAGCGAATGCAGttttac        >  1:11396859/1‑33 (MQ=38)
                            ttttcCCCCGCCGTTAGTAGCGACTGCAGtttttt        <  1:11473202/35‑1 (MQ=255)
                            ttttcCCCCGCCGTTAGTAGCGACTGCAGtttttt        <  1:17575396/35‑1 (MQ=255)
                            tttctCCccgccgcgcaattgggctatgcagcagg        >  1:16149385‑M2/1‑7 (MQ=255)
                             ttttCCCCGCCGTTAGTAGCGACTGCAGttttttt       >  1:13199331/1‑34 (MQ=255)
                             ttttCCCCGCCGTTAGTAGCGACTGCAGTTTTTTc       >  1:8936190/1‑35 (MQ=255)
                             ttgtCCccgccgcgcaattgggctatgcagcaggt       >  1:6527301‑M2/1‑6 (MQ=255)
                              tttCCccgccgcgcaattgggctatgcagcaggtc      >  1:6892417‑M2/1‑5 (MQ=255)
                              tttCCCCGCCGTTAGTAGCGACTGCAGCTTTTTCt      >  1:189246/1‑35 (MQ=255)
                              ttcccccGCCGTTAGTAGCGACTGCAGTTTTTTCt      <  1:13358025/32‑1 (MQ=255)
                              tccccccGCCGTTAGTAGCGACTGCAGTTTTTTCt      <  1:9145269/32‑1 (MQ=255)
                              tccccccGCCGTTAGTAGCGACTGCAGTTTTTTCt      <  1:10570553/32‑1 (MQ=255)
                              tccccccGCCGTTAGTAGCGACTGCAGTTTTTTCt      <  1:6852495/32‑1 (MQ=255)
                               ttCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTg     >  1:2596872/1‑35 (MQ=255)
                               gtcCccgccgcgcaattgggctatgcagcaggtct     >  1:11067706‑M2/2‑4 (MQ=255)
                               ctgcccgccgcgcaattgggctatgcagcaggtct     >  1:7675640‑M2/4‑4 (MQ=255)
                               ctcCccgccgcgcaattgggctatgcagcaggtct     >  1:417878‑M2/2‑4 (MQ=255)
                               ctcCccgccgcgcaattgggctatgcagcaggtct     >  1:4416694‑M2/2‑4 (MQ=255)
                               ccccccGCCGTTAGTAGCGACTGCAGTTTTTTCTg     <  1:9002661/33‑1 (MQ=255)
                               ccccccGCCGTTAGTAGCGACTGCAGTTTTTTCTg     <  1:1856163/33‑1 (MQ=255)
                                tCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTgg    >  1:3833205/1‑35 (MQ=255)
                                cccccGCCGTTAGTAGCGACTGCAGTTTTTTCTgg    <  1:1737804/34‑1 (MQ=255)
                                cccccGCCGTTAGTAGCGACTGCAGTTTTTTCTgg    <  1:14241487/34‑1 (MQ=255)
                                cccccGCCGTTAGTAGCGACTGCAGTTTTTTCTgg    <  1:12681414/34‑1 (MQ=255)
                                cccccGCCGTTAGTAGCGACTGCAGTTTTTTCTgg    <  1:11942089/34‑1 (MQ=255)
                                cccccGCCGTTAGTAGCGACTGCAGTTTTTTCTgg    <  1:3618959/34‑1 (MQ=255)
                                 ccccgccgcgcaattgggctatgcagcaggtctgc   >  1:14896042‑M2/1‑2 (MQ=255)
                                 ccccgccgcgcaattgggctatgcagaaggtctgc   >  1:13756392‑M2/1‑2 (MQ=255)
                                 ccccGCCGTTAGTAGCGACTGCAGTTTTTTCTGGc   <  1:4654443/35‑1 (MQ=255)
                                 ccccGCCGTTAGTAGCGACTGCAGTTTTTTCTGGc   >  1:4267684/1‑35 (MQ=255)
                                 ccccGCCGTTAGTAGCGACTGCAGTTTTTTCTGGc   >  1:16568832/1‑35 (MQ=255)
                                  cccgccgcgcaattgggctatgcagcaggtctgct  >  1:7457816‑M2/1‑1 (MQ=255)
                                  cccgccgcgcaattgggctatgcagcaggtctgct  >  1:15341698‑M2/1‑1 (MQ=255)
                                  cccgccgcgcaattgggctatgcagcaggtctgct  >  1:11415634‑M2/1‑1 (MQ=255)
                                  cccgccgcgcaattgggctatgcagcaggtctgct  >  1:3575016‑M2/1‑1 (MQ=255)
                                  cccGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCt  >  1:963076/1‑35 (MQ=255)
                                  cccGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCt  >  1:20165788/1‑35 (MQ=255)
                                  cccGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCt  <  1:14289840/35‑1 (MQ=255)
                                  cccGCCGTTAGTAGCGACTGCAGGTTTTTCTGGCt  >  1:1948807/1‑35 (MQ=255)
                                  |                                  
ACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCT  >  REL606/4091202‑4091270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.