New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 368615255 (0.540)7 (0.070) 3/46 NT 10.7% coding (410/741 nt) yiaT hypothetical protein
?REL606 = 4031953 64 (0.650)intergenic (+238/+174) hemN/glnG coproporphyrinogen III oxidase/fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein

Only 100 of 113 total aligned reads displayed.

CAATCATTGCGGCACACAGCACGGCAGCAACGGCAGTTTGCGGTGTGTGGCTGTCAACTGCGCCACTCG  >  REL606/4031919‑4031987
                                  |                                  
cAATCATTGCGGCACACAGCACGGCAGCAACGGCa                                    >  1:3877999/1‑35 (MQ=255)
cAATCATTGCGGCACACAGCACGGCAGCAACGGCa                                    <  1:12060096/35‑1 (MQ=255)
 aaTCATTGCGGCACACAGCACGGCAGGAAAGGCAg                                   >  1:3924694/1‑35 (MQ=25)
 aaTCATTGCGGCACACAGCACGGCAGCAACGGCAg                                   <  1:16391651‑M2/35‑2 (MQ=255)
 aaTCATTGCGGCACACAGCACGGCAGCAACGGCAg                                   <  1:19367888‑M2/35‑2 (MQ=255)
 aaTCATTGCGGCACACAGCACGGCAGCAACGGCAg                                   <  1:10761643‑M2/35‑2 (MQ=255)
 aaTCATGGCGGCACACAGCGCGGCAGCAACGGCAg                                   <  1:8539847/35‑1 (MQ=25)
  aTCATTGCGGCACACAGCACGGCAGCAACGGCAgg                                  <  1:18283994‑M2/35‑3 (MQ=255)
  aTCATTGCGGCACACAGCACGGCAGCAACGGCAGt                                  <  1:15209822/35‑1 (MQ=255)
  aTCATTGCGGCACACAGCACGGCAGCAACGGCAGt                                  <  1:1209836/35‑1 (MQ=255)
    cATTGCGGCACACAGCACGGCAGCAACGGCCgggg                                <  1:19018751‑M2/35‑5 (MQ=255)
    cATTGCGGCACACAGCACGGCAGCAACGGCAGttt                                <  1:18035188/35‑1 (MQ=255)
    cATTGCGGCACACAGCACGGCAGCAACGGCAGttt                                <  1:12430386/35‑1 (MQ=255)
    cATTGCGGCACACAGCACGGCAGCAACGGCAGttt                                <  1:3851963/35‑1 (MQ=255)
    cATTGCGGCACACAGCACGGCAGCAACGGCAGttt                                <  1:233719/35‑1 (MQ=255)
    cATTGCGGCACACAGCACGGCAGCAACGGCAGttt                                <  1:10468584/35‑1 (MQ=255)
    cATTGCGGCACACAGCACGGCAGCAACGGCAGttt                                <  1:19852048/35‑1 (MQ=255)
     aTTGCGGCACACAGCACGGCAGCAACGGCAGTTTg                               <  1:5255415/35‑1 (MQ=255)
     aTTGCGGCACACAGCACGGCAGCAACCGCAGGTTg                               >  1:1781779/1‑35 (MQ=25)
      ttGCGGCACACAGCACGGCAGCAACGGCAgggggg                              <  1:806310‑M2/35‑7 (MQ=255)
      ttGCGGCACACAGCACGGCAGCAACGGCAgggggg                              <  1:10642301‑M2/35‑7 (MQ=255)
      ttGCGGCACACAGCACGGCAGCAACGGCAGTTTGc                              <  1:3933476/35‑1 (MQ=255)
       tGCGGCACACAGCACGGCAGCAACGGCAggggggg                             <  1:7530558‑M2/35‑8 (MQ=255)
        gCGGCACACAGCACGGCAGCAACGGCAgggggggg                            <  1:6030464‑M2/35‑9 (MQ=255)
        gCGGCACACAGCACGGCAGCAACGGCAGTTTGCgg                            <  1:3392484/35‑1 (MQ=255)
         cGGCACACAGCACGGCAGCAACGGCAgggtggggg                           <  1:20033640‑M2/35‑10 (MQ=255)
         cGGCACACAGCACGGCAGCAACGGCAgggtggggg                           <  1:1885187‑M2/35‑10 (MQ=255)
         cGGCACACAGCACGGCAGCAACGGCAggggggggg                           <  1:14410961‑M2/35‑10 (MQ=255)
         cGGCACACAGCACGGCAGCAACGGCAggggggggg                           <  1:10378141‑M2/35‑10 (MQ=255)
         cGGCACACAGCACGGCAGCAACGGCAGTTTGCGgt                           <  1:18789166/35‑1 (MQ=255)
         cGGCACACAGCACGGCAGCAACGGCAGTTTGCGgt                           <  1:935936/35‑1 (MQ=255)
           gCACACAGCACGGCAGCAACGGCAgggtggggggt                         <  1:2349439‑M2/35‑12 (MQ=255)
            cacacaGCACGGCAGCAACGGCAGTTTGCGgtgtg                        <  1:7880212/35‑1 (MQ=255)
             acacaGCGCGGCAGCAACGGCAGTTTGCGgtgtgt                       <  1:1611627/35‑1 (MQ=255)
             acacaGCACGGCAGCAACGGCAGTTTGCGgtgtgt                       <  1:12698359/35‑1 (MQ=255)
             acacaGCACGGCAGCAACGGCAGTTTGCGgtgtgt                       <  1:2623265/35‑1 (MQ=255)
             acacaGCACGGCAGCAACGGCAGTTTGCGgtgtgt                       <  1:8011380/35‑1 (MQ=255)
              cacaGCACGGCAGCAACGGCAGTTTGCGGtgtgtg                      <  1:2303452/35‑1 (MQ=255)
              cacaGCACGGCAGCAACGGCAGTTTGCGGtgtgtg                      <  1:2001146/35‑1 (MQ=255)
              cacaGCACGGCAGCAACGGCAGTTTGCGGtgtgtg                      <  1:10237455/35‑1 (MQ=255)
               acaGCACGGCAGCAACGGCAGTTTGCGGTGTGTgg                     <  1:7401639/35‑1 (MQ=255)
               acaGCACGGCAGCAACGGCAGTTTGCGGTGTGTgg                     <  1:7723742/35‑1 (MQ=255)
               acaCCACGGCAGCAACGGCAGTTTGCGGTGTGTgg                     <  1:14659935/35‑1 (MQ=255)
                caGCCCGGCAGCAACGGCAGTTTGCGGTGTGTGGc                    <  1:3274086/35‑1 (MQ=255)
                 aGCACGGCAGCAACGGCAGTTTGCGGTGTGTGGCt                   <  1:18136954/35‑1 (MQ=255)
                 aGCACGGCAGCAACGGCAGTTTGCGGTGTGTGGCt                   <  1:14256478/35‑1 (MQ=255)
                 aGCACGGCAGCAACGGCAGTTTGCGGTGTGTGGCt                   <  1:2122677/35‑1 (MQ=255)
                  gCACGGCAGCAACGGCAGTTTGCGGTGTGTGGCTg                  <  1:6767603/35‑1 (MQ=255)
                  gCACGGCAGCAACGGCAGTTTGCGGTGTGTGGCTg                  <  1:5253851/35‑1 (MQ=255)
                  gCACGGCAGCAACGGCAGTTTGCGGTGTGTGGCTg                  <  1:16320476/35‑1 (MQ=255)
                    aCGGCAGCAACGGCAGTTTGCGGTGTGTGGCTGTc                <  1:3862644/35‑1 (MQ=255)
                    aCGGCAGCAACGGCAGTTTGCGGTGTGTGGCTGTc                <  1:8716859/35‑1 (MQ=255)
                    aCGGCAGCAACGGCAGTTTGCGGTGTGTGGCTGTc                <  1:2422566/35‑1 (MQ=255)
                    aCGGCAGCAACGGCAGTTTGCGGTGTGTGGCTGTc                <  1:14907781/35‑1 (MQ=255)
                    aCGGCAGCAACGGCAGTTTGCGGTGTGTGGCTGTc                <  1:1460803/35‑1 (MQ=255)
                    aCGGCAGCAACGGCAGTTTGCGGTGTGTGGCTGTc                <  1:13147478/35‑1 (MQ=255)
                    aCGGCAGCAACGGCAGTTTGCGGTGTGTGGCTGTc                <  1:20235008/35‑1 (MQ=255)
                     cGGCAGCACCGGCAGTTTGCGGTGTGTGGCTGTCa               <  1:20307472/35‑1 (MQ=255)
                     cGGCAGCAACGGCAGTTTGCGGTGTGTGGCTGTCa               <  1:11277468/35‑1 (MQ=255)
                     cGGCAGCAACGGCAGTTTGCGGTGTGTGGCTGTCa               <  1:14804650/35‑1 (MQ=255)
                     cGGCAGCAACGGCAGTTTGCGGTGTGTGGCTGTCa               <  1:12165314/35‑1 (MQ=255)
                      ggCAGCAACGGCAGTTTGCGGTGTGTGGCTGTCaa              <  1:1132597/35‑1 (MQ=255)
                       gcagcaACGGCAGTTTGCGGTGTGTGGCTGTCAAc             <  1:7105290/35‑1 (MQ=255)
                       gcagcaACGGCAGTTTGCGGTGTGTGGCTGTCAAc             <  1:254329/35‑1 (MQ=255)
                        cagcaACGGCAGTTTGCGGTGTGTGGCTGTCAACt            <  1:13752860/35‑1 (MQ=255)
                        cagcaACGGCAGTTTGCGGTGTGTGGCTGTCAACt            <  1:3392425/35‑1 (MQ=255)
                        cagcaACGGCAGTTTGCGGTGTGTGGCTGTCAACt            <  1:9334136/35‑1 (MQ=255)
                        cagcaACGGCAGTTTGCGGTGTGTGGCTGTCAACt            <  1:16152083/35‑1 (MQ=255)
                        cagcaACGGCAGTTTGCGGTGTGTGGCTGTCAACt            <  1:5180759/35‑1 (MQ=255)
                         agcaACGGCAGTTTGCGGTGTGTGGCTGTCAGCTg           <  1:14627922/35‑1 (MQ=255)
                         agcaACGGCAGTTTGCGGTGTGTGGCTGTCAACTg           <  1:12869394/35‑1 (MQ=255)
                         agcaACGGCAGTTTGCGGTGTGTGGCTGTCAACTg           <  1:7247751/35‑1 (MQ=255)
                         agcaACGGCAGTTTGCGGTGTGTGGCTGTCAACTg           <  1:11467794/35‑1 (MQ=255)
                         agcaACGGCAGTTTGCGGTGTGTGGCTGTCAACTg           <  1:2294901/35‑1 (MQ=255)
                         agcaACGGCAGTTTGCGGTGTGTGGCTGTCAACTg           <  1:15207006/35‑1 (MQ=255)
                          gcaACGGCAGTTTGCGGTGTGTGGCTGTCAACTgc          <  1:11153812/35‑1 (MQ=255)
                          gcaACGGCAGTTTGCGGTGTGTGGCTGTCAACTgc          <  1:12432841/35‑1 (MQ=255)
                          gcaACGGCAGTTTGCGGTGTGTGGCTGTCAACTgc          <  1:16510835/35‑1 (MQ=255)
                           taaCGGCAGTTTGCGGTGTGTGGCTGTCAACTgcg         <  1:2430897/34‑1 (MQ=255)
                           caACGGCAGTTTGCGGTGTGTGGCTGTCAACTgcg         <  1:8698206/35‑1 (MQ=255)
                           caACGGCAGTTTGCGGTGTGTGGCTGTCAACTgcg         <  1:1574645/35‑1 (MQ=255)
                            aaCGGCAGTTTGCGGTGTGTGGCTGTCAACTgcgc        <  1:9345952/35‑1 (MQ=255)
                            aaCGGCAGTTTGCGGTGTGTGGCTGTCAACTgcgc        <  1:16080096/35‑1 (MQ=255)
                            aaCGGCAGTTTGCGGTGTGTGGCTGTCAACTgcgc        <  1:804866/35‑1 (MQ=255)
                             aCGGCAGTTTGCGGTGTGTGGCTGTCAACTGCGcc       <  1:5468463/35‑1 (MQ=255)
                              cGGCAGTTTGCGGTGTGTGGCTGTCAACTGCGCCa      <  1:17915905/35‑1 (MQ=255)
                               ggCAGTTTGCGGTGTGTGGCTGTCAACTGCGCCAc     <  1:8217281/35‑1 (MQ=255)
                               ggCAGTTTGCGGTGTGTGGCTGTCAACTGCGCCAc     <  1:1036477/35‑1 (MQ=255)
                               ggCAGTTTGCGGTGTGTGGCTGTCAACTGCGCCAc     <  1:6523657/35‑1 (MQ=255)
                                gCAGTTTGCGGTGTGTGGCTGTCAACTGCGCCACt    <  1:4762311/35‑1 (MQ=255)
                                gCAGTTTGCGGTGTGTGGCTGTCAACTGCGCCACt    <  1:5561063/35‑1 (MQ=255)
                                gCAGTTTGCGGTGTGTGGCTGTCAACTGCGCCACt    <  1:7204022/35‑1 (MQ=255)
                                 cAGTTTGCGGTGTGTGGCTGTCACCTGCGCCACTc   <  1:1394880/35‑1 (MQ=255)
                                 cAGTTTGCGGTGTGTGGCTGTCAACTGCGCCACTc   <  1:4776417/35‑1 (MQ=255)
                                 cAGTTTGCGGTGTGTGGCTGTCAACTGCGCCACTc   <  1:16092833/35‑1 (MQ=255)
                                 cAGTTTGCGGTGTGTGGCTGTCAACTGCGCCACTc   <  1:9197445/35‑1 (MQ=255)
                                 cAGTTTGCGGTGTGTGGCTGTCAACTGCGCCACTc   <  1:6349894/35‑1 (MQ=255)
                                  aGTTTGCGGTGTGTGGCTGTCAACTGCGCCACTCg  <  1:12619032/35‑1 (MQ=255)
                                  aGTTTGCGGTGTGTGGCTGTCAACTGCGCCACTCg  <  1:10351937/35‑1 (MQ=255)
                                  aGTTTGCGGTGTGTGGCTGTCAACTGCGCAACTCg  <  1:9123811/35‑1 (MQ=255)
                                  |                                  
CAATCATTGCGGCACACAGCACGGCAGCAACGGCAGTTTGCGGTGTGTGGCTGTCAACTGCGCCACTCG  >  REL606/4031919‑4031987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.