New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2682742 =NA (NA)39 (0.540) 6/34 NT 45.9% noncoding (135/768 nt) IS1 repeat region
?REL606 2703961 = 65 (0.630)coding (794/1185 nt) ygaX predicted transporter

Only 100 of 1001 total aligned reads displayed.

GTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATgtccggc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2682775‑2682742
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATCGCACCAC  >  REL606/2703961‑2704001
                                                                           
GTTTTACTGCAGTGAGAGCAGAGATAGCGCTGATG                                          >  1:20165365/1‑35
GTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATG                                          <  1:19690813/35‑1
GTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATG                                          <  1:6331937/35‑1
 TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGT                                         <  1:9591639/35‑1
 TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGT                                         <  1:9212446/35‑1
 TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGT                                         <  1:18870244/35‑1
 TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGT                                         <  1:2668487/35‑1
 TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGT                                         <  1:3180873/35‑1
 TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGT                                         <  1:14763885/35‑1
  TTTACGGCATTGAGAGCAGAGATAGCGCTGATGTC                                        >  1:4384078/1‑35
  TTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTC                                        <  1:1350334/35‑1
  TTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTC                                        <  1:2151114/35‑1
  TTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTC                                        <  1:19999962/35‑1
  TTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTC                                        <  1:11405910/35‑1
  TTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTC                                        <  1:7943048/35‑1
   ttgCGGCAGTGAGAGCAGAGATAGCGCTGATGTCC                                       <  1:1981759/32‑1
   TTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC                                       <  1:145902/35‑1
   TTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC                                       <  1:2378963/35‑1
   TTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC                                       <  1:17609408/35‑1
   TTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC                                       <  1:12097827/35‑1
   TTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC                                       <  1:11767572/35‑1
   TTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC                                       <  1:6819767/35‑1
    TACTGCAGTGAGAGCAGAGATAGCGCTGATGTCCG                                      >  1:20261612/1‑35
    TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG                                      <  1:3918143/35‑1
    TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG                                      <  1:17507411/35‑1
    TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG                                      <  1:4575262/35‑1
    TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG                                      <  1:5312411/35‑1
    TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG                                      <  1:19203118/35‑1
    TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG                                      <  1:15635566/35‑1
    TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG                                      <  1:8284598/35‑1
    TACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCG                                      <  1:9364015/35‑1
    TACGGCAGTGAGAGCAGAGATAGCGCTGATGCCCG                                      <  1:17823683/35‑1
    TACGGAAGTGAGAGCAGAGATAGCGCTGATGTCCG                                      <  1:16357327/35‑1
     ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG                                     <  1:17020357/35‑1
     ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG                                     <  1:17969095/35‑1
     ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG                                     <  1:7603366/35‑1
     ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG                                     <  1:20438254/35‑1
     ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG                                     <  1:4209706/35‑1
     ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG                                     <  1:11994934/35‑1
     ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG                                     <  1:1003461/35‑1
     ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG                                     <  1:16616617/35‑1
     ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG                                     <  1:16120466/35‑1
     ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG                                     <  1:10373069/35‑1
     ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG                                     <  1:12504595/35‑1
     ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGG                                     <  1:14243196/35‑1
      CGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGC                                    <  1:5046777/35‑1
      CGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGC                                    <  1:5476480/35‑1
      CGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGC                                    <  1:2530046/35‑1
      CGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGC                                    <  1:15064565/35‑1
      CGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGC                                    <  1:8418304/35‑1
      CGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGC                                    <  1:9785153/35‑1
       GGCAGTGAGAGCAGAGATAGCGCTGATTTCCGGCG                                   >  1:6733724/1‑35
       GGCAGTGAGAGCAGAGATAGCGCTGATGTTCGGCG                                   >  1:11618546/1‑35
       GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCG                                   >  1:4738171/1‑35
       GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCG                                   <  1:4056423/35‑1
       GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCG                                   <  1:13659716/35‑1
        GCAGTGAGAGCAGATATAGCGCTGATGTCCGGCGG                                  >  1:8699941/1‑35
        GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGG                                  >  1:6160678/1‑35
        GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGG                                  >  1:1322046/1‑35
        GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGG                                  >  1:6467471/1‑35
        GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGG                                  >  1:8098579/1‑35
        GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGG                                  <  1:13393114/35‑1
        GCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGG                                  <  1:18620661/35‑1
         CAGTGAGAGCAGAGATAGCGCTGATGTCCGGGGGG                                 >  1:1527124/1‑35
         CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCTGG                                 >  1:8920846/1‑35
         CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGG                                 >  1:14453269/1‑35
         CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGG                                 >  1:7089506/1‑35
         CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGG                                 >  1:7348549/1‑35
         CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGG                                 >  1:3411797/1‑35
         CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGG                                 >  1:15821963/1‑35
         CAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGG                                 >  1:12821794/1‑35
          AGTGATAGCAGAGATAGCGCTGATGTCCGGCGGGg                                >  1:16277681/1‑34
          AGTGAGAGTAGAGATAGCGCTGATGTCCGGCGGGg                                >  1:18449499/1‑34
          AGTGAGAGCAGAGATAGCGCTGATGTCCGGCTGGg                                >  1:17407505/1‑34
          AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGatg                                <  1:19039509/35‑4
          AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg                                >  1:11026704/1‑34
          AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg                                >  1:596582/1‑34
          AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg                                >  1:5652146/1‑34
          AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg                                >  1:12322128/1‑34
          AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg                                >  1:12999416/1‑34
          AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg                                >  1:20588261/1‑34
          AGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGg                                >  1:19453398/1‑34
           GTGAGAGCAGAGATAGCGCTGATGTCCGGCGGcgc                               <  1:1023187/35‑4
           GTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgg                               >  1:3733766/1‑33
           GTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgg                               >  1:2976114/1‑33
           GTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgg                               >  1:10592619/1‑33
           GTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgc                               >  1:16024129/1‑33
           GTGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgc                               >  1:15468484/1‑33
            TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGggt                              >  1:2791840/1‑32
            TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGggt                              >  1:11158749/1‑32
            TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGggt                              >  1:14042226/1‑32
            TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGggt                              >  1:14901530/1‑32
            TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgct                              >  1:7769455/1‑32
            TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgct                              >  1:4910788/1‑32
            TGAGAGCAGAGATAGCGCTGATGTCCGGCGGGgcg                              >  1:16792126/1‑32
                AGCAGAGATAGCGCTGATGTCCGGCGGGGGGTTTT                          >  1:18150190/1‑35
                AGCAGAGATAGCGCTGATGTCCGGCGGGGGGTTTT                          >  1:3565220/1‑35
                                    CCGGCGGGCGGTTTTGCCGATAAGGGCAAATCGCA      <  1:13883410/35‑1
                                        CGGGCGGTTTTGCCGATAAGTGCAAATCGCACCAC  >  1:17235887/1‑35
                                        CGGGCGGTTTTGCCGATAAGGGCAAATCGCACCAC  <  1:10846596/35‑1
                                                                           
GTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATgtccggc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2682775‑2682742
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATCGCACCAC  >  REL606/2703961‑2704001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.