New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 218779 | 70 (0.680) | 12 (0.160) | 4/36 | NT | 15.1% | coding (669/711 nt) | cutF | lipoprotein involved with copper homeostasis and adhesion |
? | REL606 | 4525951 = | 82 (1.060) | intergenic (+8/‑59) | fimC/fimD | chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis |
CGGTGCGCCGACTAAAGTATTGGCACCCGATACGGCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/218740‑218779 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagggGGAATTTTTCGCCTGAATAAAAAGAATTGACTGC > REL606/4525951‑4525984 CGGTGCGCCGACTAAAGTATTGGCACCCGATACGG > 1:2245122/1‑35 CGGTGCGCCGACTAAAGTATTGGCACCCGATACGG < 1:2925619/35‑1 CGGTGCGCCGACTAAAGTATTGGCACCCGATACGG < 1:11581736/35‑1 CGGGGCGCCGACTAAAGTATTGGCACCCGATACGG < 1:3042471/35‑1 gggGCGCCGACTAAAGTATTGGCACCCGATACGGC < 1:13218651/32‑1 GGTGCTCCGACTAAAGTATTGGCACCCGATACGGC > 1:19879778/1‑35 GGTGCGCCGACTAAAGTATTGGCACCCGATACGGC > 1:18606301/1‑35 GTGCGCCGACTAAAGTATTGGCACCCGATACGGCA > 1:8058567/1‑35 GTGCGCCGACTAAAGTATTGGCACCCGATACGGCA > 1:12806714/1‑35 TGCGCCGACTAAAGTATTGGCACCCGATACTGCAG > 1:12101505/1‑35 TGCGCCGACTAAAGTATTGGCACCCGATACGGCAG > 1:17256132/1‑35 TGCGCCGACTAAAGTATTGGCACCCGATACGGCAG > 1:970324/1‑35 GCGCCGACTAAAGTATTGGCACCCGATACGGCAGG < 1:2479793/35‑1 GCGCCGACTAAAGTATTGGCACCCGATACGGCAGG > 1:4551813/1‑35 GCGCCGACTAAAGTATTGGCACCCGATACGGCAGG > 1:825129/1‑35 GCGCCGACTAAAGTATGGGCACCCGATACGGCAGG < 1:10461367/35‑1 CGCCGACTAAAGTATTGGCGCCCGATACGGCAGGG < 1:9156747/35‑1 CGCCGACTAAAGTATTGGCACCCGATACGGCAGGG > 1:13880529/1‑35 CGCCGACTAAAGTATTGGCACCCGATACGGCAGGG < 1:8391993/35‑1 CGCCGACTAAAGTATTGGCACCCGATACGGCAGGG < 1:9074727/35‑1 CGCCGACTAAAGTATTGGCACCCGATACGGCAGGG < 1:11623455/35‑1 CGCCGACTAAAGTATTGGCACCCGATACGGCAGGG < 1:10947385/35‑1 GCCGACTAAAGTATTGGCACCCGATACGGCAGGGG > 1:19174817/1‑35 GCCGACTAAAGTATTGGCACCCGATACGGCAGGGG > 1:7561081/1‑35 GCCGACTAAAGTATTGGCACCCGATACGGCAGGGG > 1:1473598/1‑35 GCCGACTAAAGTATTGGCACCCGATACGGCAGGGG > 1:16399097/1‑35 CCGACTAAAGTATTGGCACCCGATACGGCAGGGGG > 1:7333334/1‑35 CGACTAAAGTATTGGCACCCGATACGGCAGGGGaa > 1:18386941/1‑33 CGACTAAAGTATTGGCACCCGATACGGCAGGGGaa > 1:15791387/1‑33 CGACTAAAGTATTGGCACCCGATACGGCAGGGGGA > 1:2848623/1‑35 CGACTAAAGTATTGGCACCCGATACGGCAGGGGGA > 1:14826490/1‑35 GACTAAAGTATTGGCACCCGATACGGCAGGGGGga > 1:12862598/1‑33 GACTAAAGTATTGGCACCCGATACGGCAGGGGGAt > 1:17887183/1‑34 GACTAAAGTATTGGCACCCGATACGGCAGGGGGAA > 1:5695669/1‑35 GACTAAAGTATTGGCACCCGATACGGCAGGGGAAA > 1:2210097/1‑35 GACTAAAGTATTGGCACCCGATACGGCAGGGGAAA > 1:12674645/1‑35 TAAAGTATTGGCACCCGATACGGCAGGGGGAATTT > 1:6944847/1‑35 TAAAGTATTGGCACCCGATACGGCAGGGGAAATTT > 1:10413840/1‑35 AAAGTATTGGCACCCGATACGGCAGGGGGAGTTTT > 1:9596957/1‑35 AAAGTATTGGCACCCGATACGGCAGGGGGAATTTT > 1:2193919/1‑35 AAAGTATTGGCACCCGATACGGCAGGGGGAATTTT > 1:11476071/1‑35 AAAGTATTGGCACCCGATACGGCAGGGGGAATTTT > 1:2175167/1‑35 AAGTATTGGCACCCGATACGGCAGGGGGAATTTTT > 1:16995739/1‑35 AAGTATTGGCACCCGATACGGCAGGGGGAATTTTT > 1:6265302/1‑35 AGTATTGGCACCCGATACGGCAGGGGGAATTTTac > 1:12182402/1‑33 AGTATTGGCACCCGATACGGCAGGGGGAATTTATC > 1:10394355/1‑35 GTATTGGCACCCGATACGGCAGGGGGAATTTTccc > 1:14538603/1‑32 GTATTGGCACCCGATACGGCAGGGGGAATTTTTCc > 1:9533844/1‑34 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTt > 1:14827107/1‑34 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTG > 1:12035112/1‑35 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTG > 1:12046180/1‑35 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTG > 1:5956050/1‑35 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTG < 1:12106845/35‑1 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTG < 1:8833600/35‑1 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTG < 1:13982802/35‑1 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTG > 1:2262202/1‑35 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTG < 1:7307019/35‑1 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTG < 1:7103780/35‑1 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTG > 1:19480815/1‑35 GCAGGGGGAATTTTTCGCATGAATAAAAAGAATTG < 1:5504980/35‑1 CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGA > 1:7414346/1‑35 CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGA > 1:12196897/1‑35 CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGA > 1:16638936/1‑35 CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGA < 1:4039349/35‑1 AGGGGGAATTTTTCGCCTGAATAAAAAGAATTGAC > 1:6009889/1‑35 AGGGGGAATTTTTCGCCTGAATAAAAAGAATTGAC > 1:13332797/1‑35 AGGGGGAATTTTTCGCCTGAATAAAAAGAATTGAC > 1:1861999/1‑35 GGGGGAATTTTTCGCCTGAATAAAAAGAATTGACT < 1:10329934/35‑1 GGGGGAATTTTTCGCCTGAATAAAAAGAATTGACT < 1:13412032/35‑1 GGGGGAATTTTTCGCCTGAATAAAAAGAATTGACT < 1:13882197/35‑1 GGGGGAATTTTTCGCCTGAATAAAAAGAATTGACT > 1:14493878/1‑35 GGGGGAATTTTTCGCCTGAATAAAAAGAATTGACT < 1:16321985/35‑1 GGGGGAATTTTTCGCCTGAATAAAAAGAATTGACT < 1:6146249/35‑1 GGGGGAATTTTTCGCCTGAATAAAAAGAATTGACT < 1:3353049/35‑1 GGGGGAATTTTTCGCCTGAATAAAAAGAATTGACT > 1:4895612/1‑35 GGGGAATTTTTCGCCTGAATAAAAAGAATTGACTG > 1:20326928/1‑35 GGGGAATTTTTCGCCTGAATAAAAAGAATTGACTG > 1:18021428/1‑35 GGGGAATTTTTCGCCTGAATAAAAAGAATTGACTG > 1:2150611/1‑35 GGGGAATTTTTCGCCTGAATAAAAAGAATTGACTG < 1:14103592/35‑1 GGGGAATTTTTCGCCTGAATAAAAAGAATTGACTG > 1:11056411/1‑35 GGGGAATTTTTCGCCTGAATAAAAAGAATTGACTG > 1:10335992/1‑35 GGGAATTTTTCGCCTGAATAAAAAGAATTGACTGC > 1:19197068/1‑35 GGGAATTTTTCGCCTGAATAAAAAGAATTGACTGC > 1:4398098/1‑35 GGGAATTTTTCGCCTGAATAAAAAGAATTGACTGC < 1:12008676/35‑1 GGGAATTTTTCGCCTGAATAAAAAGAATTGACTGC < 1:10361565/35‑1 GGGAATTTTTCGCCTGAATAAAAAGAATTGACTGC < 1:5624506/35‑1 CGGTGCGCCGACTAAAGTATTGGCACCCGATACGGCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/218740‑218779 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagggGGAATTTTTCGCCTGAATAAAAAGAATTGACTGC > REL606/4525951‑4525984 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |