New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3579044 =7 (0.070)29 (0.320) 6/42 NT 37.4% intergenic (+703/‑174) gor/arsR glutathione reductase/DNA‑binding transcriptional repressor
?REL606 3912266 = 91 (1.010)intergenic (+46/‑94) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

Only 100 of 266 total aligned reads displayed.

TAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAG  >  REL606/3912232‑3912300
                                  |                                  
tAACGAACTAAGACCCCCGCACCGAAAGGTCCtgg                                    >  1:14894036/1‑35 (MQ=255)
gcccggcgacgctattttatttgcatggaggcggg                                    >  1:2885918‑M2/35‑35 (MQ=255)
gaatcagggcgtaaaaaaaccgactttgcgtcggg                                    >  1:18917529‑M2/35‑35 (MQ=255)
 gccgccgcctttgatcatttgcatgtggccggggg                                   >  1:8562947‑M2/32‑35 (MQ=255)
 cccggcgacgctattttatttgcatggaggcgggg                                   >  1:931771‑M2/34‑35 (MQ=255)
 aatcaggacgtaaaaaaaccgactttgcgtcgggg                                   >  1:12905958‑M2/34‑35 (MQ=255)
 aatcaggacgtaaaaaaaccgactttgcgtcgggg                                   >  1:11958133‑M2/34‑35 (MQ=255)
  ccggcgacgctattttatttgcatggaggcggggg                                  >  1:8880892‑M2/33‑35 (MQ=255)
  ccggcgacgctattttatttgcatggaggcggggg                                  >  1:5356382‑M2/33‑35 (MQ=255)
  ccggcgacgctattttatttgcatggaggcggggg                                  >  1:3339176‑M2/33‑35 (MQ=255)
  aCGAACTAAGACCCCCGCACCGAAAGGTCCggggg                                  >  1:11173361/1‑35 (MQ=255)
   tgactaaaaaccgacgtttcatcagcgtcggGGGt                                 >  1:1279604‑M2/32‑35 (MQ=255)
   cggcgacgctattttatttgcattgaggcgggggg                                 >  1:20558347‑M2/32‑34 (MQ=255)
   cGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGt                                 >  1:7969806/1‑35 (MQ=255)
    ggcgacgctattttatttgcatggaggcggggggt                                >  1:1296295‑M2/31‑33 (MQ=255)
    gccgcctttgatcatttgcatgtggccgGGGGGtt                                >  1:2110337‑M2/29‑35 (MQ=255)
    gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt                                >  1:13375709/1‑35 (MQ=255)
    gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt                                >  1:1817537/1‑35 (MQ=255)
    gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt                                >  1:17966694/1‑35 (MQ=255)
    gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt                                <  1:309469/35‑1 (MQ=255)
    caggacgtaaaaaaaccgactttgcgtcggGGGtt                                >  1:10228574‑M2/31‑35 (MQ=255)
    caggacgtaaaaaaaccgactttgcgtcggGGGtt                                >  1:10391893‑M2/31‑35 (MQ=255)
    caggacgtaaaaaaaccgactttgcgtcggGGGtt                                >  1:22503‑M2/31‑35 (MQ=255)
     ccgcctttgatcatttgcatgtggccgGGGGTttt                               >  1:10840791‑M2/28‑35 (MQ=255)
     ccgcctttgatcatttgcatgtggccgGGGGGttt                               >  1:15463851‑M2/28‑35 (MQ=255)
     actaaaaaccgacgtttcatcagcgtcggGGGgtt                               >  1:20276429‑M2/30‑35 (MQ=255)
     actaaaaaccgacgtttcatcagcgtcggGGGgtt                               >  1:9056801‑M2/30‑35 (MQ=255)
      ctaaaaaccgacgtttcatcagcgtcggGGGtttt                              >  1:10625995‑M2/29‑35 (MQ=255)
      cgcctttgatcatttgcatgtggccgGGGGTtttt                              >  1:19485750‑M2/27‑35 (MQ=255)
      cgacgctattttatttgcatggaggcgggggtgtg                              >  1:17353970‑M2/29‑32 (MQ=255)
       taaaaaccgacgtttcatcagcgtcggGGGgtttt                             >  1:5798182‑M2/28‑35 (MQ=255)
       gatgtaaaaaaaccgactttgcgtcggGGGttttt                             >  1:13668181‑M2/28‑35 (MQ=255)
       gacgtaaaaaaaccgactttgcgtcggGGGttttt                             >  1:3349282‑M2/28‑35 (MQ=255)
       cTAAGCCCCCCGCACCGAAAGGTCCGGGGGttttt                             <  1:7397516/35‑1 (MQ=255)
       cTAAGACCCCCGCACCGAAAGGTCCGGGGGttttt                             >  1:1071620/1‑35 (MQ=255)
        tAAGACCCCCGCACCGAAAGGTCCGGGGGtttttt                            <  1:15941843/35‑1 (MQ=255)
        cctttgatcatttgcatgtggccgGGGGTtttttt                            >  1:1835831‑M2/25‑35 (MQ=255)
        cctttgatcatttgcatgtggccgGGGGTtttttt                            >  1:19823674‑M2/25‑35 (MQ=255)
        acgtaaaaaaaccgactttgcgtcggGGTtttttt                            >  1:19103346‑M2/27‑35 (MQ=255)
        acgtaaaaaaaccgactttgcgtcggGGGtttctt                            >  1:20364417‑M2/27‑35 (MQ=255)
         tgtaaaaaaaccgactttgcgtcggGGTttttttt                           >  1:5616394‑M2/26‑35 (MQ=255)
         tgtaaaaaaaccgactttgcgtcggGGTttttttt                           >  1:17608776‑M2/26‑35 (MQ=255)
         ctttgatcatttgcatgtggccgGGGGTttttttt                           >  1:14992251‑M2/24‑35 (MQ=255)
         aaaaccgacgtttcatcagcgtcggGGGttttttt                           >  1:15893402‑M2/26‑35 (MQ=255)
         aaGACCCCCGCACCGAAAGGTCCGGGGGttttttt                           >  1:4548261/1‑35 (MQ=255)
         aaGACCCCCGCACCGAAAGGTCCGGGGGttttttt                           >  1:568918/1‑35 (MQ=255)
          gctattttatttgcatggaggcggGGgtgtttttg                          >  1:19236493‑M2/25‑34 (MQ=255)
          gctattttatttgcatggaggcggGGggttttttg                          >  1:12690822‑M2/25‑34 (MQ=255)
          gctattttatttgcatggaggcggGGGtttttttt                          >  1:5547638‑M2/25‑35 (MQ=255)
          aGACCCCCGCACCGAAAGGTCCGGTGGgttttttt                          >  1:16168339/1‑35 (MQ=38)
          aGACACCCGCACCGAAAGGTCCGGGGGtttttttt                          <  1:8191855/35‑1 (MQ=255)
           ttgatcatttgcatgtggccgGGGGtttttttttc                         >  1:10125736‑M2/22‑34 (MQ=255)
           taaaaaaaccgactttgcgtcggGGgttttttttt                         >  1:2517252‑M2/24‑34 (MQ=255)
           ctattttatttgcatggaggcggGGggtttttttt                         >  1:17139773‑M2/24‑34 (MQ=255)
           ctattttatttgcatggaggcggGGGTTTTTTTTg                         >  1:2375831‑M2/24‑35 (MQ=255)
           aaccgacgtttcatcagcgtcggGGggtttttttt                         >  1:5180529‑M2/24‑34 (MQ=255)
            accgacgtttcatcagcgtcggGggtttttttttt                        >  1:16882405‑M2/23‑33 (MQ=255)
            aCCCCCGCACCGAAAGGTCCGGGGATTTTTTTTGa                        <  1:16287795/35‑1 (MQ=255)
             aaaaaaccgactttgcgtcgggggttttttttttc                       >  1:10458309‑M2/22‑32 (MQ=255)
              ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc                      <  1:14033188/35‑1 (MQ=255)
              ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc                      <  1:17096205/35‑1 (MQ=255)
               cccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt                     >  1:13926161/1‑35 (MQ=255)
               cccGCACCGAAAGGTCCGGGGGGTTTTTTTGACCt                     >  1:8384999/1‑35 (MQ=255)
                ccGCACCGAAAGGTCCTGGGGTTTTTTTTGACCtt                    >  1:17548972/1‑35 (MQ=255)
                ccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCtt                    <  1:4118406/35‑1 (MQ=255)
                 cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa                   >  1:9539844/1‑35 (MQ=255)
                  gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa                  >  1:623809/1‑35 (MQ=255)
                  gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa                  <  1:9690737/35‑1 (MQ=255)
                  gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa                  >  1:15106899/1‑35 (MQ=255)
                   cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa                 <  1:8950619/35‑1 (MQ=255)
                   cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa                 <  1:6036952/35‑1 (MQ=255)
                    aCCGAAGGGTCCGGGGGTTTTTTTTGACCTTaaaa                <  1:2723720/35‑1 (MQ=255)
                     ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa               >  1:12456006/1‑35 (MQ=255)
                     ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa               <  1:3752852/35‑1 (MQ=255)
                      cGAAAGATCCGGGGGTTTTTTTTGACCTTAAAAAc              <  1:13191552/35‑1 (MQ=255)
                       gAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa             <  1:9229929/35‑1 (MQ=255)
                       gAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa             >  1:4270236/1‑35 (MQ=255)
                        aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt            >  1:11276752/1‑35 (MQ=255)
                        aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt            >  1:6873303/1‑35 (MQ=255)
                        aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt            <  1:17659548/35‑1 (MQ=255)
                        aaaCGTCCGGGGGTTTTTTTGACCTTAAAAACATa           <  1:4972444/35‑1 (MQ=25)
                         aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa           <  1:6615051/35‑1 (MQ=255)
                         aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa           <  1:6948494/35‑1 (MQ=255)
                         aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa           <  1:4685106/35‑1 (MQ=255)
                         aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa           <  1:13019874/35‑1 (MQ=255)
                          aGGTCCGGGGGTTTTTTTTTACCTTAAAAACATaa          >  1:11814265/1‑35 (MQ=255)
                          aGGTCCGGGGGTTTTTTTTGACCTTAAAAACATaa          >  1:4016292/1‑35 (MQ=255)
                          aGGTCCGGGGGTTTTTTTTGACATTAAAAACATaa          <  1:18593979/35‑1 (MQ=255)
                           ggTCCGGGGGTTTTTTTTGACCTTAAAAACATAAc         >  1:15371700/1‑35 (MQ=255)
                            gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc        >  1:15620853/1‑35 (MQ=255)
                            gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc        <  1:16635497/35‑1 (MQ=255)
                            gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc        <  1:13521831/35‑1 (MQ=255)
                             tCCGGGGGTTTTTTTTGACCTTAAAAACATAACCg       <  1:12152004/35‑1 (MQ=255)
                             tCCGGGGGTTTTTTTTGACCTTAAAAACATAACCg       >  1:3205100/1‑35 (MQ=255)
                               cggGGGTTTTTTTTGACCTTAAAAACATAACCgag     <  1:7688306‑M2/32‑1 (MQ=255)
                                ggGGCTTTTTTTTGACCTTAAAAACATAACCgagg    >  1:13115441‑M2/3‑35 (MQ=255)
                                  gggTTTTTTTTGACCTTAAAAACATAACCgaggag  >  1:1189815/1‑35 (MQ=255)
                                  gggTTTTTTTTGACCTTAAAAACATAACCgaggag  >  1:14206202/1‑35 (MQ=255)
                                  gggTTTTTTTTGACCTTAAAAACATAACCgaggag  >  1:14696196/1‑35 (MQ=255)
                                  gggTTTTTTTTGACCTTAAAAACATAACCgagcag  <  1:11013035/35‑1 (MQ=255)
                                  |                                  
TAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAG  >  REL606/3912232‑3912300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.