New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1286708 = | 97 (0.940) | 10 (0.120) | 4/40 | NT | 12.7% | intergenic (+32/‑151) | narI/ECB_01206 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein |
? | REL606 | = 4391784 | 57 (0.670) | coding (602/1164 nt) | yjfC | predicted synthetase/amidase |
Only 100 of 276 total aligned reads displayed.
TAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGT > REL606/1286674‑1286742 | tgcaggactgcgcccagcaggcagggcaggagtcg > 1:2422661‑M1/35‑35 (MQ=255) tgcaggactgcgcccagcaggcagggcaggagtcg < 1:12023188‑M1/1‑1 (MQ=255) tAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg > 1:15885304/1‑35 (MQ=255) tAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg < 1:1383912/35‑1 (MQ=255) gtgcatggcaagcgaatgaatatgccgtggtgggg > 1:10905641‑M1/34‑35 (MQ=255) gggcatggcaagcgaatgaatatgccgtggtgggg > 1:5727569‑M1/34‑35 (MQ=255) gggcatggcaagcgaatgaatatgccgtggtgggg > 1:278628‑M1/34‑35 (MQ=255) gggcatggcaagcgaatgaatatgccgtggggggg < 1:5468912‑M1/2‑1 (MQ=255) cgagataggccgccagaaccagttgttgcgtaagg < 1:16854641‑M1/2‑1 (MQ=255) cgagataggccgccagaaccagttgttgcgtaagg < 1:7478268‑M1/2‑1 (MQ=255) cgagataggccgccagaaccagttgttgcgtaagg < 1:6313201‑M1/2‑1 (MQ=255) cgagataggccgccagaaccagttgttgcgtaagg < 1:10502726‑M1/2‑1 (MQ=255) ggcatggcaagcgaatgaatatgccgtggtggggg < 1:15679843‑M1/3‑2 (MQ=255) ggcatggcaagcgaatgaatatgccgtggtggGGc > 1:10402864‑M1/33‑35 (MQ=255) ggcatggcaagcgaatgaatatgccgtgggggGGc < 1:20061223‑M1/3‑1 (MQ=255) gcaggactgcgcccagccggcagggcaggagtcgc > 1:6553372‑M1/34‑35 (MQ=255) gcaggactgcgcccagcaggcagggcaggagtcgc > 1:11765298‑M1/34‑35 (MQ=255) gcaggactgcgcccagcaggcagggcaggaggcgc < 1:1440148‑M1/2‑1 (MQ=255) gagataggccgccagaaccagttgttgcgtaaGGc < 1:6980097‑M1/3‑1 (MQ=255) aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc < 1:18958224/35‑1 (MQ=255) aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc < 1:19886127/35‑1 (MQ=255) aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc < 1:2011435/35‑1 (MQ=255) gcatggcaagcgaatgaatatgccgtggtggGGC‑g < 1:13694134‑M1/4‑1 (MQ=255) gcatggcaagcgaatgaatatgccgtggtggGGC‑g < 1:9304104‑M1/4‑1 (MQ=255) gcatggcaagcgaatgaatatgccgtggtggGGC‑g > 1:10393057‑M1/32‑35 (MQ=255) gcatggcaagcgaatgaatatgccgtgatggGGC‑g < 1:1477044‑M1/4‑1 (MQ=255) gcatggcaagcgaatgaatatgcagtggtggGGC‑g > 1:3623268‑M1/32‑35 (MQ=255) caggactgcgcccagcaggcagggcaggagtcgc‑g > 1:1664678‑M1/33‑35 (MQ=255) caggactgcgcccagcaggcagggcaggagtcgc‑g > 1:12858408‑M1/33‑35 (MQ=255) caggactgcgcccagcaggcagggcaggagtcgc‑g > 1:15139332‑M1/33‑35 (MQ=255) caggactgcgcccagcaggcagggcaggagtcgc‑g < 1:12648509‑M1/3‑1 (MQ=255) agataggccgccagaaccagttgttgcgtaaGGC‑g > 1:11217958‑M1/32‑35 (MQ=255) aGCGAATTTTAGTTCACATAGACCCTGCTTcggc‑g > 1:4423726/1‑35 (MQ=255) gataggccgccagaaccagttgttgcgtaaGGC‑gg < 1:16554‑M1/5‑1 (MQ=255) gatagcccgccagaaccagttgttgcgtaaGGC‑gg > 1:4185554‑M1/31‑35 (MQ=255) catggcaagcgaatgaatatgccgtggtggGGC‑gg > 1:4881117‑M1/31‑35 (MQ=255) aggactgcgcccagcaggcagggcaggagtcGC‑gg < 1:5331845‑M1/4‑1 (MQ=255) atggcaagcgaatgaatatgccgtggtggGGC‑ggg < 1:11601082‑M1/6‑1 (MQ=255) atggcaagcgaatgaatatgccgtggtggGGC‑ggg < 1:18527477‑M1/6‑1 (MQ=255) tggcaagcgaatgaatatgccgtggtggGGC‑gggg < 1:13277681‑M1/7‑1 (MQ=255) tggcaagcgaatgaatatgccgtggtggGGC‑gggg < 1:13391104‑M1/7‑1 (MQ=255) tggcaagcgaatgaatatgccgtggtggGGC‑gggg < 1:8602864‑M1/7‑1 (MQ=255) actgcgcccagcaggcagggcaggagtcGC‑GGGGt < 1:5059445‑M1/7‑1 (MQ=255) actgcgcccagcaggcagggcaggagtcGC‑GGGGt < 1:6735293‑M1/7‑1 (MQ=255) aaTTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGt < 1:20594066/35‑1 (MQ=255) ggccgccagaaccagttgttgcgtaaGGC‑GGGGtt < 1:6858154‑M1/9‑1 (MQ=255) gcaagcgaatgaatatgccgtggtggGGC‑GGGGtt < 1:14274986‑M1/9‑1 (MQ=255) ctgcgcccagcaggcagggcaggagtcgc‑gggggt < 1:2160901‑M1/8‑3 (MQ=255) aTTTTAGTTCACATAGACCCTGCTTCGGC‑tggggt > 1:10054941/1‑33 (MQ=37) aTTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGtt < 1:5834969/35‑1 (MQ=255) caagcgaatgaatatgccgtggtggggc‑gggggtt < 1:8449417‑M1/10‑4 (MQ=255) caagcgaatgaatatgccgtggtggggc‑ggggggg < 1:567106‑M1/10‑4 (MQ=255) tttAGTTCACATAGACCCTGCTTCGGC‑GGGGgttt > 1:7194217/1‑35 (MQ=255) aagcgaatgaatatgccgtggtggGGC‑GGGgtttg < 1:10717920‑M1/11‑2 (MQ=255) tAGTTCACATAGACCCTGCTTCGGC‑TGGGgttttt > 1:8291697/1‑35 (MQ=37) gcccagcaggcagggcaggagtcGC‑GGGGtgtttt < 1:8241798‑M1/12‑1 (MQ=255) cgaatgaatatgccgtggtggGGC‑GGGGttttttt < 1:16936278‑M1/14‑1 (MQ=255) ccagaaccagttgttgcgtaaGGC‑GGggtttttct < 1:4366621‑M1/14‑3 (MQ=255) ccagaaccagttgttgcgtaaGGC‑GGGGttttttt < 1:3839295‑M1/14‑1 (MQ=255) aGTTCACATAGACCCTGCTTCGGC‑GGGGgtttttt > 1:15609287/1‑35 (MQ=255) gTTCACATAGACCCTGCTTCTGC‑GGGGTTTTTTTa > 1:7554772/1‑35 (MQ=255) ccagcaggcagggcaggagtcGC‑GGggttttttct < 1:11033184‑M1/14‑3 (MQ=255) cagaaccagttgttgcgtaaGGC‑Ggggtttttctt < 1:10246583‑M1/15‑4 (MQ=255) cagaaccagttgttgcgtaaGGC‑GGGgtttttttt < 1:9088719‑M1/15‑2 (MQ=255) ttCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTAt < 1:17706267/35‑1 (MQ=255) cagcaggcagggcaggagtcGC‑Ggggttttttcct < 1:7757426‑M1/15‑4 (MQ=255) cagcaggcagggcaggagtcGC‑GGggtttttttct < 1:5256519‑M1/15‑3 (MQ=255) tCACATAGACCCTGCTTCGGC‑GGGGgttttttttt > 1:9604369/1‑32 (MQ=25) tCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATg < 1:15448597/35‑1 (MQ=255) tCACATAGACCCTGCTTCGGC‑GGGGGTTTTTTATg > 1:9741248/1‑35 (MQ=255) cacaTAGACCCTGCTTCGGC‑GGGGTTTTTTTATgg < 1:2246910/35‑1 (MQ=255) cacaTAGACCCTGCTTCGGC‑GGGGTTTTTTTATgg < 1:17634604/35‑1 (MQ=255) aaccagttgttgcgtaaGGC‑GGGGTTTTtttacgg < 1:12388186‑M1/18‑4 (MQ=255) acaTAGACCCTGCTTCGGC‑GGGGTTTTTTTATggg < 1:4068029/35‑1 (MQ=255) acaTAGACCCTGCTTCGGC‑GGGGTTTTTTTATggg < 1:1386699/35‑1 (MQ=255) caTAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGc < 1:5994723/35‑1 (MQ=255) caTAGACCCTGCTTCGGC‑GGGGGTTTTTTTTGGGc > 1:2918338/1‑35 (MQ=25) aTAGACCCTGCTTCGGCGGGGGTTTTTTTTTggga > 1:8820749/1‑34 (MQ=18) aTAGACCCTGCTTCGGC‑GGGGGTTTTTTTTTGGCa > 1:16071287/1‑35 (MQ=18) aTAGACCCTGCTTCGGC‑GGGGGTTTTTTTTTGGCa > 1:18048641/1‑35 (MQ=18) tAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCAc < 1:19426065/35‑1 (MQ=255) tAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCAc < 1:19211715/35‑1 (MQ=255) tAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCAc < 1:8998668/35‑1 (MQ=255) aGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACg < 1:4780038/35‑1 (MQ=255) aGACCCTGCTTCGGC‑GGGGGTTTTTTATTGGGACg > 1:15991613/1‑35 (MQ=21) aGACCCTGCTTCGGC‑GGGGGCTTTTTTTTGGCACg > 1:13209086/1‑35 (MQ=16) gACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACgg < 1:18429771/35‑1 (MQ=255) gACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACgg < 1:4913605/35‑1 (MQ=255) gACCCTGCTTCGGC‑GGGGGTTTTTTATTGGGACgg > 1:20335957/1‑35 (MQ=21) aCCCTGCTTCGGC‑GGGGGTTTTTTATGGGCACggg > 1:16968563/1‑34 (MQ=255) aCCCTGCTTCGGC‑GGGGGTTTTTTATGGGCACggg > 1:8027447/1‑34 (MQ=255) cccTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTg < 1:1734396/35‑1 (MQ=255) cccTGCTTCGGC‑GGGGGTTTTTTTTGGGCACgggg > 1:7257712/1‑33 (MQ=25) ccTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGc < 1:12160128/35‑1 (MQ=255) cTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCg < 1:1496796/35‑1 (MQ=255) cTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCg < 1:2380369/35‑1 (MQ=255) gCTTCGGC‑GGTGTTTTTTTATGGGCACGGTGCggg < 1:1968444/35‑1 (MQ=255) ttCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGt < 1:15257237/35‑1 (MQ=255) cggc‑ggGGTTTTTTTATGGGCACGGTGCGGGGTGa < 1:15079076/35‑1 (MQ=255) GGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAg > 1:18211800‑M1/1‑35 (MQ=255) | TAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGC‑GGGGTTTTTTTATGGGCACGGTGCGGGGTGAGT > REL606/1286674‑1286742 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |