New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2095315 =91 (0.890)5 (0.070) 3/34 NT 6.2% coding (744/1416 nt) yegB multidrug efflux system protein
?REL606 2237509 = 87 (1.200)intergenic (+34/+69) proL/yejO tRNA‑Pro/predicted autotransporter outer membrane protein

Only 100 of 213 total aligned reads displayed.

AAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTTTATATCTGCAATTAATTCGATAAACAGA  >  REL606/2237475‑2237543
                                  |                                  
acggaacagtttcagactgaacagggcacggttgg                                    >  1:14313173‑M2/35‑35 (MQ=255)
aaaaaTCCCAAGAAAAAACCAACCCTTACggttgg                                    >  1:14188445/1‑35 (MQ=255)
 cggaacagtttcagactgaacagggcacggttggt                                   >  1:18409361‑M2/34‑35 (MQ=255)
 cggaacagtttcagactgaacagggcacggttggt                                   >  1:9254696‑M2/34‑35 (MQ=255)
 cggaacagtttcagactgaacagggcacggttggg                                   >  1:20196824‑M2/34‑34 (MQ=255)
 aaaaTCCCAAGAAAAAACCAACCCTTACggttggt                                   >  1:6887393/1‑35 (MQ=255)
  ggaacagtttcagactgaacagggcacggttggta                                  >  1:18105907‑M2/33‑34 (MQ=255)
  ggaacagtttcagactgaacagggcacggttggta                                  >  1:4503982‑M2/33‑34 (MQ=255)
  aaaTCCCAAGAAAAAACCAACCCTTACggttggtt                                  <  1:12751330/35‑1 (MQ=255)
  aaaTCCCAAGAAAAAACCAACCCTTACggttggtt                                  >  1:4992041/1‑35 (MQ=255)
   gaacagtttcagactgaacagggcacggttggtat                                 >  1:7319990‑M2/32‑33 (MQ=255)
   gaacagtttcagactgaacagggcacggttggtat                                 >  1:13086870‑M2/32‑33 (MQ=255)
   aaTCCCAAGAAAAAACCAACCCTTACGGTTGGttt                                 <  1:18244993/35‑1 (MQ=255)
   aaTCCCAAGAAAAAACCAACCCTTACGGTTGGttt                                 <  1:3704182/35‑1 (MQ=255)
   aaTCCCAAGAAAAAACCAACCCTTACGGTTGGttt                                 >  1:915091/1‑35 (MQ=255)
   aaTCCCAAGAAAAAACCAACCCTTACGGTTGGttt                                 <  1:5774860/35‑1 (MQ=255)
   aaTCCCAAGAAAAAACCAACCCTTACGGTTGGttt                                 <  1:5173407/35‑1 (MQ=255)
    aacagtttcagactgaacagggcacggttgGtatt                                >  1:4710812‑M2/31‑35 (MQ=255)
    aacagtttcagactgaacagggcacggttgGtatt                                >  1:4398041‑M2/31‑35 (MQ=255)
    aTCCCAAGAAAAAACCAACCCTTACGGTTGGtttt                                >  1:1863060/1‑35 (MQ=255)
     tCCCAAGAAAAAACCAACCCTTACGGTTGGttttt                               >  1:13402695/1‑35 (MQ=255)
     tCCCAAGAAAAAACCAACCCTTACGGTTGGttttt                               >  1:8082189/1‑35 (MQ=255)
     acagtttcagactgaacagggcacggttgGtattt                               >  1:15265119‑M2/30‑35 (MQ=255)
      cccAAGAAAAAACCAACCCTTACTGTTGGgttttt                              >  1:8890619/1‑35 (MQ=37)
      cccAAGAAAAAACCAACCCTTACGGTTGGtttttt                              >  1:19731616/1‑35 (MQ=255)
      cagtttcagactgaacagggcacggttgGtttttt                              >  1:6996649‑M2/29‑35 (MQ=255)
       ccAAGAAAAAACCAACCCTTACGGTTGGttttttt                             >  1:8153461/1‑35 (MQ=255)
       ccAAGAAAAAACCAACCCTTACGGTTGGttttttt                             >  1:17211790/1‑35 (MQ=255)
        cAAGAAAAAACCAACCCTTACGGTTGGTTTTTTta                            >  1:457856/1‑35 (MQ=255)
        cAAGAAAAAACCAACCCTTACGGTTGGTTTTTTta                            <  1:1236241/35‑1 (MQ=255)
         aaGAAAAAACCAACCCTTACGGTTGGTTTTTTtat                           <  1:6578583/35‑1 (MQ=255)
         aaGAAAAAACCAACCCTTACGGTTGGTTTTTTtat                           <  1:2196677/35‑1 (MQ=255)
         aaGAAAAAACCAACCCTTACGGTTGGTTTTTTtat                           >  1:6677795/1‑35 (MQ=255)
         aaGAAAAAACCAACCCTTACGGTTGGTTTTTTtat                           >  1:1029987/1‑35 (MQ=255)
         aaGAAAAAACCAACCCTTACGGTTGGTTTTTTtat                           >  1:1479126/1‑35 (MQ=255)
         aaGAAAAAACCAACCCTTACGGTTGGTTTTTTtat                           >  1:12266890/1‑35 (MQ=255)
          aGAAAAAACCAACCCTTACGGTTGGTTTTTTtata                          >  1:352115/1‑35 (MQ=255)
          aGAAAAAACCAACCCTTACGGTTGGCTTTTTtata                          >  1:3018593/1‑35 (MQ=255)
           gAAAAAACCAACCCTTACGGTTGGTTTTTTTatat                         >  1:7531783/1‑35 (MQ=255)
            aaaaaaCCAACCCTTACGGTTGGTTTTTTTATATc                        >  1:18939604/1‑35 (MQ=255)
            aaaaaaCCAACCCTTACGGTTGGTTTTTTTATATc                        <  1:16032252/35‑1 (MQ=255)
            aaaaaaCCAACCCTTACGGTTGGTTTTTTTATATc                        <  1:16306350/35‑1 (MQ=255)
             aaaaaCCAACCCTTACGGTTGGTTTTTTTATATCt                       <  1:2402673/35‑1 (MQ=255)
             aaaaaCCAACCCTTACGGTTGGTTTTTTTATATCt                       <  1:8480701/35‑1 (MQ=255)
              aaaaCCAACCCTTACGGTTGGTTTTTTTATATCtt                      >  1:16772024/1‑34 (MQ=255)
              aaaaCCAACCCTTACGGTTGGTTTTTTTATATCTg                      <  1:5525126/35‑1 (MQ=255)
               aaaCCAACCCTTACGGTTGGTTTTTTTATATCTGc                     <  1:17720525/35‑1 (MQ=255)
               aaaCCAACCCTTACGGTTGGTTTTTTTATATCTGc                     >  1:7246160/1‑35 (MQ=255)
                aaccaaccCTTACGGTTGGTTTTTTTATATCTGCa                    >  1:5135667/1‑35 (MQ=255)
                aaccaaccCTTACGGTTGGTTTTTTTATATCTGCa                    <  1:1539886/35‑1 (MQ=255)
                 accaaccCTTACGGTTGGTTTTTTTATATCTGCaa                   <  1:1860393/35‑1 (MQ=255)
                 accaaccCTTACGGTTGGTTTTTTTATATCTGCaa                   <  1:12144465/35‑1 (MQ=255)
                  ccagccCTTACGGTTGGTTTTTTTATATCTGCaat                  <  1:19343489/35‑1 (MQ=255)
                  ccaaccCTTACGGTTGGTTTTTTTATATCTGCaat                  <  1:5438119/35‑1 (MQ=255)
                  ccaaccCTTACGGTTGGTTTTTTTATATCTGCaat                  >  1:3095739/1‑35 (MQ=255)
                  ccaaccCTTACGGTTGGTTTTTTTATATCTGCaat                  >  1:4280294/1‑35 (MQ=255)
                    aaccCTTACGGTTGGTTTTTTTATATCTGCaatta                <  1:6504773/35‑1 (MQ=255)
                    aaccCTTACGGTTGGTTTTTTTATATCTGCaatta                >  1:12964466/1‑35 (MQ=255)
                    aaccCTTACGGTTGGTTTTTTTATATCTGCaatta                >  1:9675455/1‑35 (MQ=255)
                     accCTTACTGTTGGTTTTTTTATATCTGCaattaa               >  1:8758579/1‑35 (MQ=255)
                     accCTTACGGTTGGTTTTTTTATATCTGCaattaa               <  1:18544987/35‑1 (MQ=255)
                     accCTTACGGTTGGTTTTTTTATATCTGCaattaa               <  1:6383837/35‑1 (MQ=255)
                      cccTTACGGTTGGTTTTTTTATATCTGCaattaat              <  1:1063082/35‑1 (MQ=255)
                      cccTTACGGTTGGTTTTTTTATATCTGCaattaat              >  1:6896715/1‑35 (MQ=255)
                      cccTTACGGTTGGTTTTTTTATATCTGCaattaat              <  1:14350977/35‑1 (MQ=255)
                      cccTTACGGTTGGTTTTTTTATATCTGCaattaat              <  1:19946816/35‑1 (MQ=255)
                       ccTTACGGTTGGTTTTTTTATATCTGCaattaatt             >  1:4061562/1‑35 (MQ=255)
                        cTTGCGGTTGGTTTTTTTATATCTGCAATTAATTc            <  1:12808733/35‑1 (MQ=255)
                         ttACGGTTGGTTTTTTTATATCTGCAATTAATTCg           >  1:11413899/1‑35 (MQ=255)
                         ttACGGTTGGTTTTTTTATATCTGCAATTAATTCg           <  1:7866844/35‑1 (MQ=255)
                         ttACGGTTGGTTTTTTTATATCTGCAATTAATTCg           <  1:14524772/35‑1 (MQ=255)
                         ttACGGTTGGTTTTTTTATATCTGCAATTAATTCg           >  1:20256514/1‑35 (MQ=255)
                          tACGGTTGGTTTTTTTATATCTGCAATTAATTCGa          <  1:20355504/35‑1 (MQ=255)
                          tACGGTTGGTTTTTTTATATCTGCAATTAATTCGa          <  1:15715367/35‑1 (MQ=255)
                          tACGGTTGGTTTTTTTATATCTGCAATTAATTCGa          >  1:5609160/1‑35 (MQ=255)
                          tACGGTTGGTTTCTTTATATCTGCAATTAATTCGa          >  1:9051635/1‑35 (MQ=255)
                           acggttgGTTTTTTTATATCTGCAATTAATTCGAt         >  1:16519847‑M2/8‑35 (MQ=255)
                           acggttgGTTTTTTTATATCTGCAATTAATTCGAt         >  1:17995204‑M2/8‑35 (MQ=255)
                           acggttgGTTTTTTTATATCTGCAATTAATTCGAt         >  1:8251212‑M2/8‑35 (MQ=255)
                           acggttgGTTTTTTTATATCTGCAATTAATTCGAt         <  1:3404385‑M2/28‑1 (MQ=255)
                           acggttgGGTTTTTTATATCTGCAATTAATTCGAt         >  1:14913557‑M2/8‑35 (MQ=255)
                            cggttgGTTTTTTTATATCTGCAATTAATTCGATa        <  1:12438530‑M2/29‑1 (MQ=255)
                            cggttgGTTTTTTTATATCTGCAATTAATTCGATa        <  1:10849157‑M2/29‑1 (MQ=255)
                             ggttgGTTTTTTTATATCTGCAATTAATTCGATaa       <  1:7767437‑M2/30‑1 (MQ=255)
                             ggttgGTTTTTTTATATCTGCAATTAATTCGATaa       <  1:17077031‑M2/30‑1 (MQ=255)
                             ggttgGTTTTTTTATATCTGCAATTAATTCGATaa       >  1:11531017‑M2/6‑35 (MQ=255)
                             ggttgGTTTTTTTATATCTGCAATTAATTCGATaa       >  1:11781561‑M2/6‑35 (MQ=255)
                             ggttgGTTTTTTTATATCTGCAATTAATTCGATaa       <  1:6062511‑M2/30‑1 (MQ=255)
                             ggttgGTTTTTTTATATCTGCAATTAATTCGATaa       >  1:15500457‑M2/6‑35 (MQ=255)
                              gttgGTTTTTTTATATCTGCAATTAATTCGATaaa      <  1:17492287‑M2/31‑1 (MQ=255)
                              gttgGTTTTTTTATATCTGCAATTAATTCGATaaa      <  1:11004850‑M2/31‑1 (MQ=255)
                               ttgGTTTTTTTATATCTGCAATTAATTCGATAAAc     >  1:15962640‑M2/4‑35 (MQ=255)
                               ttgGTTTTTTTATATCTGCAATTAATTCGATAAAc     >  1:15229937‑M2/4‑35 (MQ=255)
                               ttgGTTTTTTTATATCTGCAATTAATTCGATAAAc     <  1:344660‑M2/32‑1 (MQ=255)
                                 ngttTTTTTATATCTGCAATTAATTCGATAAACa  >  1:7906913/2‑34 (MQ=255)
                                 gGTTTTTTTATATCTGCAATTAATTCGATAAACAg   >  1:7682232‑M2/2‑35 (MQ=255)
                                 gGTTTTTTTATATCTGCAATTAATTCGATAAACAg   <  1:6619667‑M2/34‑1 (MQ=255)
                                 gGTTTTTTTATATCTGCAATTAATTCGATAAACAg   >  1:17387306‑M2/2‑35 (MQ=255)
                                 gGTTTTTTTATATCTGCAATTAATTCGATAAACAg   >  1:12647544‑M2/2‑35 (MQ=255)
                                 gGTTTTTTTATATCTGCAATTAATTCGATAAACAg   <  1:1672449‑M2/34‑1 (MQ=255)
                                  |                                  
AAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTTTATATCTGCAATTAATTCGATAAACAGA  >  REL606/2237475‑2237543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.