New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 368616056 (0.540)23 (0.230) 5/46 NT 30.0% coding (402/741 nt) yiaT hypothetical protein
?REL606 = 4467594 NA (NA)intergenic (‑281/+73) holC/pepA DNA polymerase III subunit chi/leucyl aminopeptidase

Only 100 of 143 total aligned reads displayed.

TGTGGAATACCGATAGCTCCCCCACCCAGCCGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3686126‑3686160
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  REL606/4467594‑4467561
                                                                     
 GTGGAATACCGATAGCTCCCCCACCCAGCCGTTGa                                   >  1:11269094/1‑34
                 cCCCCCCCCCAGCCGTTGTAGGCCTGATAAGACGC                   <  1:17995873/34‑1
                  CCCCCCCCCAGCCGTTGTAGGCCTGATAAGACGCG                  <  1:4446339/35‑1
                   CCCCCCCCAGCCGTTGTAGGCCTGATAAGACGCGC                 <  1:6131751/35‑1
                   CCCCCCCCAGCCGTTGTAGGCCTGATAAGACGCGC                 <  1:2865566/35‑1
                       cCCCAGCCGTTGTAGGCCTGATAAGACGCGCAAGC             <  1:7568299/34‑1
                       cCCCAGCCGTTGTAGGCCTGATAAGACGCGCAAGC             <  1:9371672/34‑1
                        CCCAGCCGTTGTAGGCCTGATAAGACGCGCAAGCG            <  1:9533212/35‑1
                         CCAGCCGTTGTAGGCCTGATAAGACGCGCAAGCGT           <  1:783597/35‑1
                          CAGCCGTTGTAGGCCTGATAAGACGCGCAAGCGTC          <  1:3316719/35‑1
                          CAGCCGTTGTAGGCCTGATAAGACGCGCAAGCGTC          <  1:4545082/35‑1
                          CAGCCGTTGTAGGCCTGATAAGACGCGCAAGCGTC          <  1:16566140/35‑1
                           AGCCGTTGTAGGCCTGATAAGACGCGCAAGCGTCG         <  1:5278682/35‑1
                           AGCCGTTGTAGGCCTGATAAGACGCGCAAGCGTCG         <  1:8116129/35‑1
                           AGCCGTTGTAGGCCTGATAAGACGCGCAAGCGTCG         <  1:6669881/35‑1
                            GCCGTTGTAGGCCTGATAAGACGCGCAAGCGTCGC        <  1:4011322/35‑1
                             CCGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCA       <  1:18298466/35‑1
                             CCGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCA       <  1:9804089/35‑1
                              CGTTGTAGGCCTGATAAGACGCGCAAGCGTGGCAT      >  1:7053836/1‑35
                              CGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCAT      >  1:4367779/1‑35
                               GTTGTAGGCCTGATAAGACGCGCAAGCGTCGCAcc     >  1:20555701/1‑33
                               GTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATC     <  1:4672422/35‑1
                               GTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATC     <  1:18690490/35‑1
                               GTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATC     <  1:13690001/35‑1
                               GTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATC     >  1:10157131/1‑35
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    >  1:181024/1‑35
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    >  1:17594202/1‑35
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    >  1:3850741/1‑35
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    <  1:3586010/35‑1
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    <  1:19655375/35‑1
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    <  1:19765664/35‑1
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    <  1:2297283/35‑1
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    >  1:2374444/1‑35
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    >  1:10042762/1‑35
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    >  1:9451897/1‑35
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    <  1:9244698/35‑1
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    <  1:8858323/35‑1
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    >  1:8665228/1‑35
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    <  1:12272146/35‑1
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    <  1:834510/35‑1
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    >  1:1332413/1‑35
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    <  1:13732348/35‑1
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    <  1:8089646/35‑1
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    <  1:14580229/35‑1
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    >  1:15306778/1‑35
                                TTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    >  1:1547347/1‑35
                                TTGTAGGCCTGATAAGACGCGCAAGCGGCGCATCA    >  1:20089936/1‑35
                                 TGTGGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:19949459/35‑1
                                 TGTATGCCTGATAAGACGCGCAAGCGTCGCATCAG   >  1:17857983/1‑35
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:7654976/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   >  1:8212865/1‑35
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   >  1:341894/1‑35
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:6878837/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:5733909/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:4523468/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:5690169/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:4844332/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   >  1:10106480/1‑35
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:10657531/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   >  1:10791730/1‑35
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   >  1:11524561/1‑35
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:12294053/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:12450843/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:14049922/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:14577822/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:14750695/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:15350704/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   >  1:15425461/1‑35
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   >  1:16012742/1‑35
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:16242097/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:1627698/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   >  1:16728450/1‑35
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   >  1:2622963/1‑35
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:17289700/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   >  1:178453/1‑35
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:19125305/35‑1
                                 TGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:19815276/35‑1
                                 TGTAGGCCTGATAAGACACGCAAGCGTCGCATCAG   <  1:6034267/35‑1
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:9854734/35‑1
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  >  1:2292703/1‑35
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:2876971/35‑1
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:11153759/35‑1
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:1152394/35‑1
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  >  1:3065581/1‑35
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:11701653/35‑1
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:8529252/35‑1
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  >  1:8355933/1‑35
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:19414321/35‑1
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  >  1:12615022/1‑35
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:13940698/35‑1
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:18909176/35‑1
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  >  1:18735317/1‑35
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  >  1:7375259/1‑35
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  >  1:1572750/1‑35
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  >  1:16895982/1‑35
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:16867065/35‑1
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  >  1:16865223/1‑35
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:1633685/35‑1
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:5010139/35‑1
                                  GTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:4769329/35‑1
                                                                     
TGTGGAATACCGATAGCTCCCCCACCCAGCCGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3686126‑3686160
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  REL606/4467594‑4467561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.