New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2933125 =46 (0.450)11 (0.140) 5/38 NT 16.9% coding (1669/2874 nt) gcvP glycine dehydrogenase
?REL606 = 3606341 72 (0.890)coding (1517/2076 nt) yhjG predicted outer membrane biogenesis protein

GTTATCAGCAGATGATTGCGCAGCTGGCTGACTGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2933163‑2933125
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggGGGAAATGAACGGTGACGCGGAACTACGCGGTAG  <  REL606/3606341‑3606308
                                                                         
tTTATCAGCAGATGATTGCGCAGCTGGCTGACTGG                                        <  1:2655371/34‑1
GTTATCAGCAGATGATTGCGCAGCTGGCTGACTGG                                        <  1:17554227/35‑1
GTTATCAGCAGATGATTGCGCAGCTGGCTGACTGG                                        >  1:474105/1‑35
GTTATCAGCAGATGATTGCGCAGCTGGCTGACTGG                                        <  1:19023444/35‑1
GTTATCAGCAGATGATTGCGCAGCTGGCTGACTGG                                        <  1:3397982/35‑1
 TTATCAGCAGATGATTGCGCAGCTTGCTGACTGGC                                       >  1:15192802/1‑35
 TTATCAGCAGATGATTGCGCAGCTGGCTGACTGGC                                       <  1:16367681/35‑1
 TTATCAGCAGATGATTGCGCAGCTGGCTGACTGGC                                       >  1:7819892/1‑35
 TTATCAGCAGATGATTGCGCAGCTGGCTGACTGGC                                       >  1:1325901/1‑35
  TATCAGCAGATGATTGCGCAGCTGGCTGACTGGCT                                      <  1:11850120/35‑1
   ATCAGCAGATGATTGCGCAGCTGGCTGACTGGCTt                                     >  1:1716009/1‑34
   ATCAGCAGATGATTGCGCAGCTGGCTGACTGGCTG                                     <  1:19051688/35‑1
   ATCAGCAGATGATTGCGCAGCTGGCTGACTGGCTG                                     <  1:14550605/35‑1
   ATCAGCAGATGATTGCGCAGCTGGCTGACTGGCTG                                     <  1:19666843/35‑1
   ATCAGCAGATGATTGCGCAGCTGGCTGACTGGCTG                                     >  1:13477350/1‑35
   ATCAGCAGATGATTGCGCAGCTGGCTGACTGGCTG                                     >  1:392844/1‑35
   ATCAGCAGATGATTGCGCAGCTGGCTGACTGGCTG                                     >  1:6630539/1‑35
   ATCAGCAGATGATTGCGCAGCTGGCTGACTGGCTG                                     >  1:7462849/1‑35
    TCAGCAGATGATTGCGCAGCTGGCTGACTGGCTGG                                    <  1:1816815/35‑1
    TCAGCAGATGATTGCGCAGCTGGCTGACTGGCTGG                                    >  1:3594667/1‑35
    TCAGCAGATGATTGCGCAGCTGGCTGACTGGCTGG                                    >  1:12092629/1‑35
    TCAGCAGATGATTGCGCAGCTGGCTGACTGGCTGG                                    >  1:14779836/1‑35
     catCAGATGATTGCGCAGCTGGCTGACTGGCTGGG                                   >  1:11894175/4‑35
     CAGCAGATGATTGCGCAGCTGGCTGACTGGCTGGG                                   >  1:13926442/1‑35
     CAGCAGATGATTGCGCAGCTGGCTGACTGGCTGGG                                   >  1:308681/1‑35
     CAGCAGATGATTGCGCAGCTGGCTGACTGGCTGGG                                   >  1:1317581/1‑35
     CAGCAGATGATTGCGCAGCTGGCTGACTGGCTGGG                                   >  1:5463945/1‑35
     CAGCAGATGATTGCGCACCTGGCTGACTGGCTGGG                                   >  1:625915/1‑35
      AGCAGATGATTGCGCAGCTGGCTGACTGGCTGGGG                                  >  1:18782744/1‑35
      AGCAGATGATTGCGCAGCTGGCTGACTGGCTGGGG                                  >  1:17601446/1‑35
      AGCAGATGATTGCGCAGCTGGCTGACTGGCTGGGG                                  >  1:9879935/1‑35
      AGCAGATGATTGCGCAGCTGGCTGACTGGCTGGGG                                  >  1:14260349/1‑35
      AGCAGATGATTGCGCAGCTGGCTGACTGGCTGGGG                                  >  1:1119316/1‑35
      AGCAGATGATTGCGCAGCTGGCTGACTGGCTGGGG                                  >  1:16159638/1‑35
       GCAGATGATTGCGCAGCTGGCTGACTGGCTGGGGG                                 >  1:2944552/1‑35
        CAGATGATTGCGCAGCTGGCTGACTGGCTGGGGGg                                >  1:18564719/1‑34
        CAGATGATTGCGCAGCTGGCTGACTGGCTGGGGGg                                >  1:6543773/1‑34
         AGATGATTGCGCAGCTGGCTGACTGGCTGGGGGga                               >  1:14195366/1‑33
         AGATGATTGCGCAGCTGGCTGACTGGCTGGGGGAA                               >  1:15717118/1‑35
          GATGATTGCGCAGCTGGCTGACTGGCTGGGGGGAA                              >  1:11991277/1‑35
          GATGATTGCGCAGCTGGCTGACTGGCTGGGGGGAA                              >  1:11149468/1‑35
          GATGATTGCGCAGCTGGCTGACTGGCTGGGGGAAA                              >  1:5939026/1‑35
           ATGATTGCGCAGCTGGCTGACTGGCTGGGGGAAct                             >  1:11580060/1‑33
            TGATTGCGCAGCTGGCTGACTGGCTGGGGGGAATG                            >  1:17389041/1‑35
            TGATTGCGCAGCTGGCTGACTGGCTGGGGGGAATG                            >  1:9590642/1‑35
             GATTGCGCAGCTGGCTGACTGGCTGGGGGGAATGA                           >  1:148617/1‑35
             GATTGCGCAGCTGGCTGACTGGCTGGGGGGAATGA                           >  1:7720813/1‑35
             GATTGCGCAGCTGGCTGACTGGCTGGGGGAAATGg                           >  1:13295448/1‑34
             GATTGCGCAGCTGGCTGACTGGCTGGGGGAAATGA                           >  1:658751/1‑35
              ATTGCGCAGCTGGCTGACTGGCTGGGGGAAATGAA                          >  1:6810551/1‑35
               TTGCGCAGCTGGCTGACTGGCTGGGGGGAATGAAC                         >  1:10062150/1‑35
                                  GCTGGGGGAAATGAACGGTGACGCGGAACTACGCG      >  1:10897613/1‑35
                                  GCTGGGGGAAATGAACGGTGACGCGGAACTACGCG      >  1:16448183/1‑35
                                  GCTGGGGGAAATGAACGGTGACGCGGAACTACGCG      <  1:16864170/35‑1
                                   cttGGGGAAATGAACGGTGACGCGGAACTACGCGG     >  1:5482577/4‑35
                                   CTGGGGGAAATGAACGGTGACGCGGAACTACGCGG     >  1:754549/1‑35
                                   CTGGGGGAAATGAACGGTGACGCGGAACTACGCGG     >  1:5011570/1‑35
                                   CTGGGGGAAATGAACGGTGACGCGGAACTACGCGG     >  1:11245360/1‑35
                                   CTGGGGGAAATGAACGGTGACGCGGAACTACGCGG     >  1:16277549/1‑35
                                   CTGGGGGAAATGAACGGTGACGCGGAACTACGCGG     >  1:18218285/1‑35
                                    TGGGGGAAATGAACGGTGACGCGGAACTACGCGGT    <  1:8397690/35‑1
                                    TGGGGGAAATGAACGGTGACGCGGAACTACGCGGT    >  1:1636007/1‑35
                                    TGGGGGAAATGAACGGTGACGCGGAACTACGCGGT    >  1:16064724/1‑35
                                    TGGGGGAAATGAACGGTGACGCGGAACTACGCGGT    >  1:4308732/1‑35
                                     GGGGGAAATGAACGGTGACGCTGAACTACGCGGTA   >  1:13250517/1‑35
                                     GGGGGAAATGAACGGTGACGCGGAACTACGCGGTA   <  1:2983306/35‑1
                                     GGGGGAAATGAACGGTGACGCGGAACTACGCGGTA   >  1:10361801/1‑35
                                     GGGGGAAATGAACGGTGACGCGGAACTACGCGGTA   <  1:16558874/35‑1
                                     GGGGGAAATGAACGGTGACGCGGAACTACGCGGTA   >  1:9733214/1‑35
                                      GGGGAAATGAACGGTGACGCGGAACTACGCGGTAG  <  1:14784399/35‑1
                                      GGGGAAATGAACGGTGACGCGGAACTACGCGGTAG  <  1:4051884/35‑1
                                      GGGGAAATGAACGGTGACGCGGAACTACGCGGTAG  <  1:16581438/35‑1
                                      GGGGAAATGAACGGTGACGCGGAACTACGCGGTAG  <  1:12625134/35‑1
                                      GGGGAAATGAACGGTGACGCGGAACTACGCGGTAG  >  1:3758699/1‑35
                                                                         
GTTATCAGCAGATGATTGCGCAGCTGGCTGACTGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2933163‑2933125
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggGGGAAATGAACGGTGACGCGGAACTACGCGGTAG  <  REL606/3606341‑3606308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.