New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2836222 | 59 (0.570) | 12 (0.120) | 7/46 | NT | 15.4% | coding (29/396 nt) | ygdD | conserved inner membrane protein |
? | REL606 | = 4349299 | 75 (0.760) | intergenic (‑166/‑110) | yjeH/groES | predicted transporter/co‑chaperonin GroES |
Only 100 of 106 total aligned reads displayed.
GCCCAGAGCCACAAAAATGAA‑GCCGCTAATGGCGGCGAAAATCAGCATAAAACGGCTGGTCATGGTCGT > REL606/2836188‑2836256 | gCCCAGAGCCACAAAAATGAA‑GCCGCTAATGGCGG > 1:9735235‑M1/1‑35 (MQ=255) gCCCAGAGCCACAAAAATGAA‑GCCGCTAATGGCGG > 1:15284786‑M1/1‑35 (MQ=255) gCCCAGAGCCACAAAAATGAA‑GCCGCTAATGGCGG > 1:5374517‑M1/1‑35 (MQ=255) gCCCAGAGCCACAAAAATGAA‑GCAGCTAATGGCGG > 1:2562129‑M1/1‑35 (MQ=255) cccAGAGCCACAAAAATGAA‑GCCGCTAATGGCGGg > 1:4006493‑M1/1‑34 (MQ=255) cccAGAGCCACAAAAATGAA‑GCCGCTAATGGCGGg > 1:14687055‑M1/1‑34 (MQ=255) ccAGAGCCACAAAAATGAA‑GCCGCTAATGgcggcg > 1:11249624/1‑35 (MQ=255) ccAGAGCCACAAAAATGAA‑GCCGCTAATGGCGGgg > 1:2863657‑M1/1‑33 (MQ=255) ccAGAGCCACAAAAATGAA‑GCCGCTAATGGCGGgg > 1:58400‑M1/1‑33 (MQ=255) ccAGAGCCACAAAAATGAA‑GCCGCTAATGGCGGgg > 1:7193411‑M1/1‑33 (MQ=255) cAGAGCCACAAAAATGAA‑GCCGCTAATGgcggcgg > 1:8201211/1‑34 (MQ=255) cAGAGCCACAAAAATGAA‑GCCGCTAATGGCGGggg > 1:15319086‑M1/1‑32 (MQ=255) cAGAGCCACAAAAATGAA‑GCCGCTAATGGCGGggg > 1:10496118‑M1/1‑32 (MQ=255) cAGAGCCACAAAAATGAA‑GCCGCTAATGGCGGCGa > 1:17426790/1‑35 (MQ=255) agagCCACAAAAATGAA‑GCCGCTAATGGCGGggga > 1:8868909‑M1/1‑31 (MQ=255) agagCCACAAAAATGAA‑GCCGCTAATGGCGGggga > 1:14571760‑M1/1‑31 (MQ=255) agCCACAAAAATGAA‑GCCGCTAATGGCGGgggaaa > 1:1693075‑M1/1‑29 (MQ=255) agCCACAAAAATGAA‑GCAGCTAATGGCGGCGaaaa < 1:17875150/35‑1 (MQ=255) acccAAAAAAATAAA‑GCCGCTAATGGCGGCGaaaa < 1:4584944/33‑1 (MQ=21) acccAAAAAAATAAA‑GCCGCTAATGGCGGCGaaaa < 1:2818506/33‑1 (MQ=21) gCCACAAAAATGAA‑GCCGCTAATGGCGGggggaga > 1:7090406‑M1/1‑28 (MQ=255) gCCACAAAAATGAA‑GCCGCTAATGGCGGgggaaaa > 1:12384829‑M1/1‑28 (MQ=255) ccACAAAAATGAA‑GCCGCTAATGGCGGggggaaac > 1:10596405‑M1/1‑27 (MQ=255) ccACAAAAATGAA‑GCCGCTAATGGCGGggggaaaa > 1:8432535‑M1/1‑27 (MQ=255) ccACAAAAATGAA‑ACCGCTAATGGCGGGGgaaacc > 1:206253/1‑33 (MQ=21) ccAAAAAAATAAA‑GCCGCTAATGGCGGCGAAAATc < 1:14704257/35‑1 (MQ=25) ccAAAAAAAAAAA‑GCCGCTAATGGCGGCGAAAATc < 1:13598808/35‑1 (MQ=21) cacaAAAATGAA‑GCCGCTAATGGCGGggggaaaca > 1:5534186‑M1/1‑26 (MQ=255) cacaAAAATGAA‑GCCGCTAATGGCGGgggaaaaaa > 1:13607276‑M1/1‑26 (MQ=255) cacaAAAATGAA‑GCCGCTAATGGCGGgggaaaaaa > 1:18774791‑M1/1‑26 (MQ=255) caaaaaaaAAAA‑GCCGCTAATGGCGGCGAAAATCa < 1:10315568/32‑1 (MQ=21) aaaaaaaaAAAA‑GCCGCTAATGGCGGCGAAAATCa < 1:1209100/32‑1 (MQ=21) aaaaaaaTAAA‑GCCGCTAATGGCGGCGAAAATCAg < 1:7362838/33‑1 (MQ=25) aaaaaaaGAAA‑GCCGCTAATGGCGGCGAAAATCAg < 1:12387172/33‑1 (MQ=25) aaaaaaaAAAA‑GCCGCTAATGGCGGCGAAAATCAg < 1:9726012/33‑1 (MQ=21) caAAAATGAA‑GCCGCTAATGGCGGgggaaaaaagc > 1:8448551‑M1/1‑24 (MQ=255) caAAAATGAA‑GCCGCTAATGGCGGGGGAAATAAGc > 1:19615541/1‑35 (MQ=21) aaaaaaGAAA‑GCCGCTAATGGCGGCGAAAATCAGc < 1:11015581/34‑1 (MQ=25) aaaaaaAGAAGGCCGCTAATGGCGGCGAAAATCAg < 1:10097713/34‑1 (MQ=21) aaaaaTGAA‑GCCGCTAATGGCGGGGGAAAACAgga > 1:4988887/1‑33 (MQ=21) aaaaTGAA‑GCCGCTAATGGCGGGGGAAAACAGCaa > 1:2452453/1‑34 (MQ=25) aaaaTGAA‑GCCGCTAATGGCGGGGGAAAACAGCaa > 1:19521706/1‑34 (MQ=25) aaaTGAA‑GCCGCTAATGGCGGggggaaaaagaaaa > 1:9172282‑M1/1‑21 (MQ=255) aaTGAA‑GCCGCTAATGGCGGggggaaaaagaaaaa > 1:8649812‑M1/1‑20 (MQ=255) aaTGAA‑GCCGCTAATGGCGGGGGAAAAAAACATaa > 1:6788204/1‑35 (MQ=12) aaTAAA‑CCCGCTAATGGCGGCGAAAATCAGCATaa < 1:12154027/35‑1 (MQ=25) ataaa‑GCCGCTAATGGCGGCGAAAATCAGCATaaa < 1:19751120/32‑1 (MQ=255) aaaaa‑GCCGCTAATGGCGGCGAAAATCAGCATaaa < 1:8933845/32‑1 (MQ=255) aaaaa‑GCCGCTAATGGCGGCGAAAATCAGCATaaa < 1:9351237/32‑1 (MQ=255) aTGAA‑GCCGCTAATGGCGGggggaaaaagaataaa > 1:2532559‑M1/1‑19 (MQ=255) aaaa‑GCCGCTAATGGCGGCGAAAATCAGCATaaaa < 1:14088706/33‑1 (MQ=255) aaa‑GCCGCTAATGGCGGCGAAAATCAGCATAAAAc < 1:4189588/34‑1 (MQ=255) aaa‑GCCGCTAATGGCGGCGAAAATCAGCATAAAAc < 1:15167753/34‑1 (MQ=255) aaa‑GCCGCTAATGGCGGCGAAAATCAGCATAAAAc < 1:17862683/34‑1 (MQ=255) aa‑GCCGCTAATGGCGGGGGAAAAAAGCATaaaaaa > 1:18691641/1‑33 (MQ=16) aa‑GCCGCTAATGGCGGCGAAAATCAGCATAAAACg < 1:10519327/35‑1 (MQ=255) aa‑GCCGCTAATGGCGGCGAAAATCAGCATAAAACg < 1:11923198/35‑1 (MQ=255) aa‑GCCGCTAATGGCGGCGAAAATCAGCATAAAACg < 1:18863279/35‑1 (MQ=255) a‑GCCGCTAATGGCGGCGAAAATCAGCATAAAACgg < 1:13707178/35‑1 (MQ=255) a‑GCCGCTAATGGCGGCGAAAATCAGCATAAAACgg < 1:19437342/35‑1 (MQ=255) acccGCTAATGGCGGCGAAAATCAGCGTAAAACgg < 1:4807040/33‑1 (MQ=25) ccGCTAATGGCGGCGAAAATCAGCATAAAACGGCt < 1:15350460/35‑1 (MQ=255) ccGCTAATGGCGGCGAAAATCAGCATAAAACGGCt < 1:8650963/35‑1 (MQ=255) cGCTAATGGCGGCGAAAATCAGCATAAAACGGCTg < 1:19908892/35‑1 (MQ=255) cGCTAATGGCGGCGAAAATCAGCATAAAACGGCTg < 1:19803044/35‑1 (MQ=255) cGCTAATGGCGGCGAAAATCAGCATAAAACGGCTg < 1:18420584/35‑1 (MQ=255) cGCTAATGGCGGCGAAAATCAGCATAAAACGGCTg < 1:19352767/35‑1 (MQ=255) cGCTAATGGCGGCGAAAATCAGCATAAAACGGCTg < 1:8726480/35‑1 (MQ=255) cGCTAATGGCGGCGAAAATCAGCATAAAACGGCTg < 1:630894/35‑1 (MQ=255) cGCTAATGGCGGCGAAAATCAGCATAAAACGGATg < 1:11085800/35‑1 (MQ=255) gCTAATGTCGGCGAAAATCAGCATAAAACGGCTgg > 1:5448570/1‑35 (MQ=255) gCTAATGGCGGCGAAAATCAGCATAAAACGGCTgg < 1:14002670/35‑1 (MQ=255) gCTAATGGCGGCGAAAATCAGCATAAAACGGCTgg < 1:16103542/35‑1 (MQ=255) tAATGGCGGCGAAAATCAGCATAAAACGGCTGGTc < 1:15105925/35‑1 (MQ=255) tAATGGCGGCGAAAATCAGCATAAAACGGCTGGTc < 1:8459533/35‑1 (MQ=255) tAATGGCGGCGAAAATCAGCATAAAACGGCTGGTc < 1:10204321/35‑1 (MQ=255) aaTGGCGGCGAAAATCAGCATAAAACGGCTGGtaa < 1:7903149/35‑3 (MQ=255) aaTGGCGGCGAAAATCAGCATAAAACGGCTGGTCa < 1:1718081/35‑1 (MQ=255) aaTGGCGGCGAAAATCAGCATAAAACGGCTGGTCa < 1:19089707/35‑1 (MQ=255) aaTGGCGGCGAAAATCAGCATAAAACGGCTGGTCa < 1:19261721/35‑1 (MQ=255) aaTGGCGGCGAAAATCAGCATAAAACGGCTGGTCa < 1:15324213/35‑1 (MQ=255) tGGCGGCGAAAATCAGCATAAAACGGCTGGTCATg < 1:15633903/35‑1 (MQ=255) tGGCGGCGAAAATCAGCATAAAACGGCTGGTCATg < 1:4880497/35‑1 (MQ=255) tGGCGGCGAAAATCAGCATAAAACGGCTGGTCATg < 1:3673214/35‑1 (MQ=255) ggcggcGAAAATCAGCATAAAACGGCTGGTCATgg < 1:12460377/35‑1 (MQ=255) ggcggcGAAAATCAGCATAAAACGGCTGGTCATgg < 1:16084161/35‑1 (MQ=255) gcggcgAAAATCAGCATAAAACGGCTGGTCATGGt < 1:1832148/35‑1 (MQ=255) gcggcgAAAATCAGCATAAAACGGCTGGGGATGGt > 1:3750318/1‑35 (MQ=25) cggcgAAAATCAGCATAAAACGGCTGGTCATGGTc < 1:9335871/35‑1 (MQ=255) cggcgAAAATCAGCATAAAACGGCTGGTCATGGTc < 1:16041952/35‑1 (MQ=255) cggcgAAAATCAGCATAAAACGGCTGGGGATgggc > 1:10782424/1‑33 (MQ=25) cggcgAAAATCAGCATAAAACGGCTGGGGATgggc > 1:15488942/1‑33 (MQ=25) ggcgAAAATCAGCATAAAACTGCTGGTCATGGTCg > 1:12657976/1‑35 (MQ=255) gggggaaaaagaaaaaaaattctgatcagcacaaa > 1:7241996‑M1/1‑1 (MQ=255) gggggaaaaagaaaaaaaattctgatcagcacaaa > 1:1828663‑M1/1‑1 (MQ=255) gcgAAAATCAGCATAAAACGGCTGGTCATGGTCGt < 1:8619028/35‑1 (MQ=255) gcgAAAATCAGCATAAAACGGCTGGTCATGGTCGt < 1:3223416/35‑1 (MQ=255) gcgAAAATCAGCATAAAACGGCTGGTCATGGTCGt < 1:15420377/35‑1 (MQ=255) gcgAAAATCAGCATAAAACGGCTGGTCATGGTCGt < 1:16256614/35‑1 (MQ=255) gcgAAAATCAGCATAAAACGGCTGGGGATGGGCgg > 1:4437818/1‑34 (MQ=25) | GCCCAGAGCCACAAAAATGAA‑GCCGCTAATGGCGGCGAAAATCAGCATAAAACGGCTGGTCATGGTCGT > REL606/2836188‑2836256 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |