Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 2,448,493 IS186 (+) +6 bp 66.5% intergenic (+24/+21) nupC → / ← yfeA nucleoside (except guanosine) transporter/predicted diguanylate cyclase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2448493 =30 (0.470)59 (0.660) 32/42 NT 58.4% intergenic (+24/+26) nupC/yfeA nucleoside (except guanosine) transporter/predicted diguanylate cyclase
?REL606 = 2774196 NA (NA)noncoding (1343/1343 nt) IS186 repeat region
* ? REL606 = 244849832 (0.500)64 (0.710) 34/42 NT 58.8% intergenic (+29/+21) nupC/yfeA nucleoside (except guanosine) transporter/predicted diguanylate cyclase
?REL606 2772854 = NA (NA)noncoding (1/1343 nt) IS186 repeat region

Only 100 of 263 total aligned reads displayed.

TGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGC  >  REL606/2448459‑2448527
                                  |                                  
tGGTGCTGTAAGACCATACATAAAAAAGCCGGGGa                                    <  1:10410702/35‑1 (MQ=255)
 ggTGCTGTAAGACCATACATAAAAAAGCCGGGGAt                                   <  1:10696737/35‑1 (MQ=255)
 ggTGCTGTAAGACCATACATAAAAAAGCCGGGGAt                                   >  1:11940317/1‑35 (MQ=255)
  gTGCTGTAAGACCATACATAAAAAAGCCGGGGATa                                  <  1:10892486/35‑1 (MQ=255)
  gTGCTGTAAGACCATACATAAAAAAGCCGGGGATa                                  >  1:11544137/1‑35 (MQ=255)
    gCTGTAAGACCATACATAAAAAAGCCGGGGATAAt                                >  1:15010088/1‑35 (MQ=255)
    gCTGTAAGACCATACATAAAAAAGCCGGGGATAAt                                <  1:18507891/35‑1 (MQ=255)
    gCTGTAAGACCATACATAAAAAAGCCGGGGATAAt                                <  1:5619186/35‑1 (MQ=255)
     ggttcaacccttaagttagcgcttatgggATAAtt                               <  1:1350345‑M1/6‑1 (MQ=255)
     cTGTAAGACCATACATAAAAAAGCCGGGGATAAtt                               >  1:11125271/1‑35 (MQ=255)
     cTGTAAGACCATACATAAAAAAGCCGGGGATAAtt                               <  1:3938081/35‑1 (MQ=255)
     cTGTAAGACCATACATAAAAAAGCCGGGGATAAtt                               >  1:20429344/1‑35 (MQ=255)
     cTGTAAGACCATACATAAAAAAGCCGGGGATAAtt                               >  1:13465229/1‑35 (MQ=255)
     cTGTAAGACCATACATAAAAAAGCCGGGGATAAtt                               >  1:8948967/1‑35 (MQ=255)
      tGTAAGACCATACATAAAAAAGCCGGGGATAATTc                              <  1:16798709‑M1/35‑2 (MQ=255)
       ttcaacccttaagttagcgcttatgggATCATTcc                             <  1:9789853‑M1/8‑1 (MQ=255)
       gTAAGACCATACATAAAAAAGCCGGGGATAATTcc                             <  1:19728252‑M1/35‑3 (MQ=255)
       gTAAGACCATACATAAAAAAGCCGGGGATAATTcc                             <  1:2888579‑M1/35‑3 (MQ=255)
        tAAGACCATACATAAAAAAGCCGGGGATAATTccc                            >  1:4913032‑M1/1‑32 (MQ=255)
        tAAGACCATACATAAAAAAGCCGGGGATAATTccc                            <  1:2576006‑M1/35‑4 (MQ=255)
         caacccttaagttagcgcttatgggATAATTcccc                           >  1:19825005‑M1/26‑35 (MQ=255)
         aaGACCATACATAAAAAAGCCGGGGATAATTcccc                           <  1:17004888/35‑1 (MQ=255)
         aaGACCATACATAAAAAAGCCGGGGATAATTcccc                           >  1:184997/1‑35 (MQ=255)
         aaGACCATACATAAAAAAGCCGGGGATAATTccca                           >  1:11534607‑M1/1‑31 (MQ=255)
          aacccttaagttagcgcttatgggATAATTCCCCg                          >  1:18362053‑M1/25‑35 (MQ=255)
          aGACCATACATAAAAAAGCCGGGGATAATTcccat                          >  1:11600311‑M1/1‑30 (MQ=255)
          aGACCATACATAAAAAAGCCGGGGATAATTCCCCg                          <  1:14381800/35‑1 (MQ=255)
          aGACCATACATAAAAAAGCCGGGGATAATTCCCCg                          >  1:19880050/1‑35 (MQ=255)
           gACCATACATAAAAAAGCCGGGGATAATTcccata                         >  1:6211445‑M1/1‑29 (MQ=255)
           gACCATACATAAAAAAGCCGGGGATAATTCCCCgg                         <  1:2304398/35‑1 (MQ=255)
           gACCATACATAAAAAAGCCGGGGATAATTCCCCgg                         >  1:19427471/1‑35 (MQ=255)
            aCCATACATAAAAAAGCCGGGGATAATTcccataa                        <  1:20490648‑M1/35‑8 (MQ=255)
            aCCATACATAAAAAAGCCGGGGATAATTCCCCGGt                        <  1:14938077/35‑1 (MQ=255)
              catacataAAAAAGCCGGGGATAATTcccataagc                      <  1:18999955‑M1/35‑10 (MQ=255)
              catacataAAAAAGCCGGGGATAATTCCCCGGttt                      >  1:12429540/1‑35 (MQ=255)
               atacataAAAAAGCCGGGGATAATTcccataagcg                     <  1:15303238‑M1/35‑11 (MQ=255)
                taagttagcgcttatgggATAATTCCCCGGttttt                    >  1:17223589‑M1/19‑35 (MQ=255)
                taagttagcgcttatgggATAATTCCCCGGttttt                    <  1:15814655‑M1/17‑1 (MQ=255)
                 acataAAAAAGCCGGGGATAATTcccataagcgct                   >  1:11804998‑M1/1‑23 (MQ=255)
                 acataAAAAAGCCGGGGATAATTCCCCGGtttttt                   <  1:4535044/35‑1 (MQ=255)
                 acataAAAAAGCCGGGGATAATTCCCCGGtttttt                   <  1:745932/35‑1 (MQ=255)
                  cataAAAAAGCCGGGGATGATTcccataagcgcta                  <  1:19409856‑M1/35‑14 (MQ=255)
                  cataAAAAAGCCGGGGATGATTcccataagcgcta                  >  1:139947‑M1/1‑22 (MQ=255)
                  cataAAAAAGCCGGGGATAATTcccataagcgcta                  <  1:13256105‑M1/35‑14 (MQ=255)
                  cataAAAAAGCCGGGGATAATTcccataagcgcta                  >  1:807083‑M1/1‑22 (MQ=255)
                  cataAAAAAGCCGGGGATAATTCCCCGGttttttt                  <  1:5153122/35‑1 (MQ=255)
                  agttagcgcttatgggATAATTCCCCGGttttttt                  >  1:7578461‑M1/17‑35 (MQ=255)
                   gttagcgcttatgggATAATTCCCCGGTTTTTTTa                 <  1:8657160‑M1/20‑1 (MQ=255)
                   gttagcgcttatgggATAATTCCCCGGTTTTTTTa                 <  1:17790497‑M1/20‑1 (MQ=255)
                   ataAAAAAGCCGGGGATAATTcccataagcgctaa                 <  1:15190322‑M1/35‑15 (MQ=255)
                   ataAAAAAGCCGGGGATAATTcccataagcgctaa                 >  1:20036515‑M1/1‑21 (MQ=255)
                    ttagcgcttatgggATAATTCCCCGGTTTTTTTAc                >  1:2867691‑M1/15‑35 (MQ=255)
                    ttagcgcttatgggATAATTCCCCGGTTTTTTTAc                <  1:3772738‑M1/21‑1 (MQ=255)
                    ttagcgcttatgggATAATTCCCCGGTTTTTTTAc                <  1:17432747‑M1/21‑1 (MQ=255)
                    taAAAAAGCCGGGGATAATTcccataagcgctaac                <  1:20157422‑M1/35‑16 (MQ=255)
                    taAAAAAGCCGGGGATAATTCCCCGGTTTTTTTAc                <  1:2664667/35‑1 (MQ=255)
                    taAAAAAGCCGGGGATAATGCCCCGGTTTTTTTAc                <  1:6284854/35‑1 (MQ=255)
                     tagcgcttatgggATAATTCCCCGGTTTTTTTACg               >  1:17660642‑M1/14‑35 (MQ=255)
                     aaaaaaGCCGGGGATAATTCCCCGGTTTTTTTACg               <  1:13141680/35‑1 (MQ=255)
                     aaaaaaGCCGGGGATAATTCCCCGGTTTTTTTACg               >  1:6068266/1‑35 (MQ=255)
                      agcgcttatgggATAATTCCCCGGTTTTTTTACGc              <  1:15743302‑M1/23‑1 (MQ=255)
                      aaaaaGCCGGGGATAATTcccataagcgctaactt              >  1:9332881‑M1/1‑18 (MQ=255)
                      aaaaaGCCGGGGATAATTcccataagcgctaactt              >  1:2105052‑M1/1‑18 (MQ=255)
                      aaaaaGCCGGGGATAATTcccataagcgctaactt              >  1:15700963‑M1/1‑18 (MQ=255)
                      aaaaaGCCGGGGATAATTcccataagcgctaactt              <  1:6507339‑M1/35‑18 (MQ=255)
                        cgcttatgggATAATTCCCCGGTTTTTTTACGCCt            <  1:2510540‑M1/25‑1 (MQ=255)
                        cgcttatgggATAATTCCCCGGTTTTTTTACGCCt            <  1:14618220‑M1/25‑1 (MQ=255)
                         gcttatgggATAATTCCCCGGTTTTTTTACGCCTg           >  1:7776935‑M1/10‑35 (MQ=255)
                         gcttatgggATAATTCCCCGGTTTTTTTACGCCTg           >  1:3428254‑M1/10‑35 (MQ=255)
                         aaGCCGGGGATAATTcccataagcgctaacttaag           >  1:18895499‑M1/1‑15 (MQ=255)
                         aaGCCGGGGATAATTcccataagcgctaacttaag           <  1:367403‑M1/35‑21 (MQ=255)
                         aaGCCGGGGATAATTCCCCGGTTTTTTTACGCCTg           >  1:16333615/1‑35 (MQ=255)
                          cttatgggATAATTCCCCGGTTTTTTTACGCCTGt          >  1:9395986‑M1/9‑35 (MQ=255)
                          cttatgggATAATTCCCCGGTTTTTTTACGCCTGt          >  1:7351671‑M1/9‑35 (MQ=255)
                           ttatgggATAATTCCCCGGTTTTTTTACGCCTGtt         <  1:13571975‑M1/28‑1 (MQ=255)
                           gCCGGGGATAATTCCCCGGTTTTTTTACGCCTGtt         >  1:16367244/1‑35 (MQ=255)
                             cGGTGATAATTcccataagcgctaacttaagggtt       >  1:8531378‑M1/1‑11 (MQ=255)
                             atgggATAATTCCCCGGTTTTTTTACGCCTGTTaa       >  1:640511‑M1/6‑35 (MQ=255)
                              tgggATAATTCCCCGGTTTTTTTACGCCTGTTAAt      <  1:19267890‑M1/31‑1 (MQ=255)
                              tgggATAATTCCCCGGTTTTTTTACGCCTGTTAAt      <  1:14295695‑M1/31‑1 (MQ=255)
                              ggggATAATTcccataagcgctaacttaagggttg      <  1:7014372‑M1/35‑26 (MQ=255)
                                ggATAATTcccataagcgctaacttaagggttgtg    <  1:12675952‑M1/35‑28 (MQ=255)
                                ggATAATTcccataagcgctaacttaagggttgtg    >  1:1908678‑M1/1‑8 (MQ=255)
                                ggATAATTCCCCGGTTTTTTTACGCCTGTTAATCa    <  1:4144605‑M1/33‑1 (MQ=255)
                                ggATAATTCCCCGGTTTTTTTACGCCTGTTAATCa    >  1:9170554‑M1/3‑35 (MQ=255)
                                 gATAATTcccataagcgctaacttaagggttgtgg   <  1:12344453‑M1/35‑29 (MQ=255)
                                 gATAATTcccataagcgctaacttaagggttgtgg   <  1:7316999‑M1/35‑29 (MQ=255)
                                 gATAATTcccataagcgctaacttaagggttgtgg   <  1:16547122‑M1/35‑29 (MQ=255)
                                 gATAATTcccataagcgctaacttaaggattgtgg   >  1:15461687‑M1/1‑7 (MQ=255)
                                 gATAATTCCCCGGTTTTTTTACGCCTGTTAATCAg   <  1:10145800‑M1/34‑1 (MQ=255)
                                 gATAATTCCCCGGTTTTTTTACGCCTGTTAATCAg   <  1:8166078‑M1/34‑1 (MQ=255)
                                 gATAATTCCCCGGTTTTTTTACGCCTGTTAATCAg   >  1:17938064‑M1/2‑35 (MQ=255)
                                 gATAATTCCCCGGTTTTTTTACGCCTGTTAATCAg   <  1:19512042‑M1/34‑1 (MQ=255)
                                 gATAATTCCCCGGTTTTTTTACGCCTGTTAATCAg   >  1:5520301‑M1/2‑35 (MQ=255)
                                  aTAATTcccataagcgctaacttaagggttgtggt  <  1:17315807‑M1/35‑30 (MQ=255)
                                  aTAATTcccataagcgctaacttaagggttgtggt  <  1:2812843‑M1/35‑30 (MQ=255)
                                  aTAATTCCCCGGTTTTTTTACGCCTGTTAATCAGc  >  1:18257137/1‑35 (MQ=255)
                                  aTAATTCCCCGGTTTTTTTACGCCTGTTAATCAGc  >  1:13777010/1‑35 (MQ=255)
                                  aTAATTCCCCGGTTTTTTTACGCCTGTTAATCAGc  >  1:13360551/1‑35 (MQ=255)
                                  aTAATTCCCCGGTTTTTTTACGCCTGTTAATCAGc  >  1:4695640/1‑35 (MQ=255)
                                  |                                  
TGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGC  >  REL606/2448459‑2448527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.