New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2533712 = | 95 (0.920) | 9 (0.130) | 3/32 | NT | 14.4% | coding (987/2007 nt) | hyfR | DNA‑binding transcriptional activator, formate sensing |
? | REL606 | 3554407 = | 44 (0.640) | coding (321/384 nt) | yhhH | hypothetical protein |
Only 100 of 180 total aligned reads displayed.
TGACCGATTTGCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATCTGG > REL606/2533678‑2533746 | tGACCGATTTGCAGGAAAGTTTGCAGCAAGAAAac > 1:9825381/1‑35 (MQ=255) tGACCGATTTGCAGGAAAGTTTGCAGCAAGAAAac > 1:10321707/1‑35 (MQ=255) tGACCGATTTGCAGGAAAGTTTGCAGCAAGAAAac > 1:15522652/1‑35 (MQ=255) gACCGATTTGCAGGAAAGTTTGCAGCAAGAAAacc < 1:4562835/35‑1 (MQ=255) ccatcatttttgcctatttctataataaaaacccc < 1:9250186‑M1/2‑1 (MQ=255) ccatcatttttgcctatttctataataaaaacccc > 1:16992404‑M1/34‑35 (MQ=255) aCCGATTTGCAGGAAAGTTTGCAGCAAGAAAacc‑a < 1:5891479/35‑1 (MQ=255) aCCGATTTGCAGGAAAGTTTGCAGCAAGAAAacc‑a > 1:2308901/1‑35 (MQ=255) aCCGATTTGCAGGAAAGTTTGCAGCAAGAAAacc‑a < 1:2065920/35‑1 (MQ=255) ccGATTTGCAGGAAAGTTTGCAGCAAGAAAacc‑ac > 1:957164/1‑35 (MQ=255) ccGATTTGCAGGAAAGTTTGCAGCAAGAAAacc‑ac > 1:2218009/1‑35 (MQ=255) ccGATTTGCAGGAAAGTTTGCAGCAAGAAAacc‑ac < 1:17205737/35‑1 (MQ=255) atcatttttgcctatttctataataaaaacccc‑ac < 1:19839807‑M1/4‑1 (MQ=255) atcatttttgcctatttctataataaaaacccc‑ac < 1:19106268‑M1/4‑1 (MQ=255) atcatttttgcctatttctataataaaaacccc‑ac < 1:16157264‑M1/4‑1 (MQ=255) tcatttttgcctatttctataataaaaacccc‑acc < 1:7692554‑M1/5‑1 (MQ=255) cGATTTGCAGGAAAGTTTGCAGCAAGAAAacc‑acc > 1:1938864/1‑35 (MQ=255) catttttgcctatttctataataaaaacccc‑acca > 1:3434711‑M1/30‑35 (MQ=255) catttttgcctatttctataataaaaacccc‑acca > 1:1875117‑M1/30‑35 (MQ=255) atttttgcctatttctataataaaaaccCC‑ACCAg < 1:18004504‑M1/7‑1 (MQ=255) atttttgcctatttctataataaaaaccCC‑ACCAg < 1:1953386‑M1/7‑1 (MQ=255) aTTTGCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAg > 1:14868210/1‑35 (MQ=255) tttttgcctatttctataataaaaaccCC‑ACCAGc < 1:11990589‑M1/8‑1 (MQ=255) tttttgcctatttctataataaaaaccCC‑ACCAGc > 1:13288128‑M1/28‑35 (MQ=255) ttGCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCt > 1:3376986/1‑35 (MQ=255) ttGCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCt > 1:17546875/1‑35 (MQ=255) ttGCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCt > 1:6465107/1‑35 (MQ=255) ttGCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCt > 1:19905984/1‑35 (MQ=255) ttGCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCt > 1:8439772/1‑35 (MQ=255) ttGCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCt < 1:8497965/35‑1 (MQ=255) ttGCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCt > 1:15703175/1‑35 (MQ=255) tGCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCtt > 1:2985216/1‑35 (MQ=255) gCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTa > 1:8688468/1‑35 (MQ=255) gCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTa > 1:14058854/1‑35 (MQ=255) gCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTa > 1:6873365/1‑35 (MQ=255) gCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTa < 1:12894152/35‑1 (MQ=255) cAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTAg > 1:8950236/1‑35 (MQ=255) cAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTAg > 1:1597027/1‑35 (MQ=255) aGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTAGc > 1:15175556/1‑35 (MQ=255) aGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTAGc > 1:16792752/1‑35 (MQ=255) aGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTAGc > 1:501704/1‑35 (MQ=255) aGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTAGc > 1:9298483/1‑35 (MQ=255) aGGAAAGTTTGCAGCAAGAAAAAC‑ACCAGCTTAGc < 1:5129887/35‑1 (MQ=255) ggAAATTTTGCAGCAAGAAAACC‑ACCAGCTTAGCg > 1:6687710/1‑35 (MQ=255) ggAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTAGCg > 1:2433339/1‑35 (MQ=255) ggAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTAGCg > 1:5321128/1‑35 (MQ=255) aaaGTTTGCAGCAAGAAAACC‑ACCAGCTTATCGag > 1:13575522/1‑35 (MQ=255) aaaGTTTGCAGCAAGAAAACC‑ACCAGCTTAGCGag > 1:18120051/1‑35 (MQ=255) aaaGTTTGCAGCAAGAAAACC‑ACCAGCTTAGCGag > 1:11115543/1‑35 (MQ=255) aaGTTTGCAGCAAGAAAACC‑ACCAGCTTAGCGagc > 1:5474903/1‑35 (MQ=255) aaGTTTGCAGCAAGAAAACC‑ACCAGCTTAGCGagc > 1:16198910/1‑35 (MQ=255) aGTTTGCAGCAAGAAAACC‑ACCAGCTTAGCGagca > 1:5367660/1‑35 (MQ=255) aGTTTGCAGCAAGAAAACC‑ACCAGCTTAGCGagca > 1:11191814/1‑35 (MQ=255) aGTTTGCAGCAAGAAAACC‑ACCAGCTTAGCGagca > 1:13802264/1‑35 (MQ=255) aGTTGGCAGCAAGAAACCC‑ACCAGCTTAGCGagca < 1:10072445/35‑1 (MQ=37) gTTTGCAGCAATAAAACC‑ACCAGCTTAGCGagcag > 1:19127514/1‑35 (MQ=255) tttGCAGCAAGAAAACC‑ACCAGCTTAGCGagcagc > 1:5725449/1‑35 (MQ=255) ttGCAGCAAGAAAACC‑ACCAGCTTAGCGAGCAGCt > 1:2153187/1‑35 (MQ=255) tGCAGCAAGAAACCC‑ACAAGCTTAGCGAGCAGCTc < 1:20052567/35‑1 (MQ=38) tGCAGCAAGAAAACC‑ACCAGCTTAGCGAGCAGCTc > 1:4943685/1‑35 (MQ=255) gcagcaAGAAAACC‑ACCAGCTTAGCGAGCAGCTcc > 1:11885507/1‑35 (MQ=255) gcagcaAGAAAACC‑ACCAGCTTAGCGAGCAGCTcc > 1:16886239/1‑35 (MQ=255) cagcaAGAAAACC‑ACCAGCTTAGCTAGCAGCTCCt > 1:1021725/1‑35 (MQ=255) cagcaAGAAAACC‑ACCAGCTTAGCGAGCAGCTCCt > 1:4529914/1‑35 (MQ=255) agcaaaaaccCC‑ACCAGCTTAGCGAGCAGCTCCtt > 1:9151‑M1/11‑35 (MQ=255) agcaAGAAAACC‑ACCAGCTTAGCGAGCAGCTCCtt > 1:4442916/1‑35 (MQ=255) aacaAAAAACCC‑ACCAGCTTAGCGAGAAGCTCCtt < 1:3770432/33‑1 (MQ=25) aaaaaaaaccCC‑ACCAGCTTAGCGAGCAGCTCCtt > 1:4106208‑M1/11‑35 (MQ=255) gcaAGAAAACC‑ACCAGCTTAGCGAGCAGCTCCttt > 1:8898256/1‑35 (MQ=255) gcaAGAAAACC‑ACCAGCTTAGCGAGCAGCTCCttt > 1:18510590/1‑35 (MQ=255) aaaaaaaccCC‑ACCAGCTTAGCGAGCAGCTCCttt > 1:1155497‑M1/10‑35 (MQ=255) caAGAAAACC‑ACCAGCTTAGCGAGCAGCTCCTTTc > 1:13020060/1‑35 (MQ=255) caAGAAAACC‑ACCAGCTTAGCGAGCAGCTCCTTTc > 1:7196291/1‑35 (MQ=255) caAGAAAACC‑ACCAGCTTAGCGAGCAGCTCCTTTc > 1:12105226/1‑35 (MQ=255) aaaaaaacCC‑ACCAGCTTAGCGAGCAGCTCCTTTc > 1:18930214‑M1/9‑35 (MQ=255) aaaaaacCC‑ACCAGCTTAGCGAGCAGCTCCTTTCg > 1:10521608‑M1/8‑35 (MQ=255) aaGAAAACC‑ACCAGCTTAGCGAGCAGCTCCTTTCg > 1:3656132/1‑35 (MQ=255) aaaaaaCCAACCAGCTTAGCGAGCAGCTCCTTTCg < 1:2037986/33‑1 (MQ=25) aGAAAACC‑ACCAGCTTAGCGAGCAGCTCCTTTCGa > 1:1702365/1‑35 (MQ=255) aGAAAACC‑ACCAGCTTAGCGAGCAGCTCCTTTCGa > 1:323634/1‑35 (MQ=255) gAAAACC‑ACCAGCTTAGCGAGCAGCTCCTTTCGaa > 1:14218981/1‑35 (MQ=255) aaaccCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGaa > 1:10820514‑M1/6‑35 (MQ=255) aaaacCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGaa > 1:13794622‑M1/6‑35 (MQ=255) aaacCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAAt > 1:8031583‑M1/5‑35 (MQ=255) aaaaCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAAt > 1:13359267/1‑35 (MQ=255) aaaaCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAAt > 1:18643144/1‑35 (MQ=255) aaaCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATc > 1:11484738/1‑35 (MQ=255) aaaCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATc > 1:19195671/1‑35 (MQ=255) aaaCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATc > 1:8666521/1‑35 (MQ=255) aaCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATCt > 1:2650310/1‑35 (MQ=255) aaCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATCt > 1:14562823/1‑35 (MQ=255) aaCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATCt > 1:5529607/1‑35 (MQ=255) aaCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATCt > 1:5430149/1‑35 (MQ=255) cCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATCTg > 1:19046285‑M1/2‑35 (MQ=255) cCC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATCTg > 1:15364957‑M1/2‑35 (MQ=255) acc‑accAGCTTAGCGAGCAGCTCCTTTCGAATCTg > 1:3154302/1‑35 (MQ=255) acc‑accAGCTTAGCGAGCAGCTCCTTTCGAATCTg > 1:4033690/1‑35 (MQ=255) CC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATCTgg > 1:14328098‑M1/1‑35 (MQ=255) CC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATCTgg < 1:9060249‑M1/35‑1 (MQ=255) CC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATCTgg < 1:12814568‑M1/35‑1 (MQ=255) | TGACCGATTTGCAGGAAAGTTTGCAGCAAGAAAACC‑ACCAGCTTAGCGAGCAGCTCCTTTCGAATCTGG > REL606/2533678‑2533746 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |