New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 932696 =61 (0.590)12 (0.180) 3/32 NT 18.9% coding (59/696 nt) aqpZ aquaporin Z
?REL606 = 3040633 62 (0.910)coding (654/810 nt) pppA bifunctional prepilin leader peptidase/ methylase

Only 100 of 235 total aligned reads displayed.

TTAAAGCAACGTTGGGCAGTGATAACGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGTAATACATCGC  >  REL606/3040599‑3040667
                                  |                                  
ttAAAGCAACGTTGGGCAGTGATAACGCCcccacc                                    >  1:20233634/1‑35 (MQ=255)
ttAAAGCAACGTTGGGCAGTGATAACGCCcccacc                                    >  1:550180/1‑35 (MQ=255)
ttAAAGCAACGTTGGGCAGTGATAACGCCcccacc                                    <  1:2938540/35‑1 (MQ=255)
 tAAAGCAACGTTGGGCAGTGATAACGCCCCCACCC                                   >  1:3109155‑M1/1‑35 (MQ=255)
   aaGCAACGTTGGGCAGTGATAACGCCCCCACCCAG                                 <  1:17517174‑M1/35‑1 (MQ=255)
   aaGCAACGTTGGGCAGTGATAACGCCCCCACCCAG                                 >  1:6497818‑M1/1‑35 (MQ=255)
    aGCAACGTTGGGCAGTGATAACGCCCCCACCCAGC                                <  1:8659895‑M1/35‑1 (MQ=255)
    aGCAACGTTGGGCAGTGATAACGCCCCCACCCAGC                                >  1:10187558‑M1/1‑35 (MQ=255)
    aGCAACGTGGGGCAGTGATAACGCCCCCACCCAGC                                <  1:14588107‑M1/35‑1 (MQ=255)
     gCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC                               >  1:16538447‑M1/1‑35 (MQ=255)
     gCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC                               <  1:15549434‑M1/35‑1 (MQ=255)
     gCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC                               <  1:3066035‑M1/35‑1 (MQ=255)
      cAACGTTGGGCAGTGATAACGCCCCCACCCAGCCA                              >  1:37542‑M1/1‑35 (MQ=255)
       aaCGTTGGGCAGTGATAACGCCCCCACCcagccac                             <  1:8158929‑M2/35‑8 (MQ=255)
        aCGTTGGGCAGTTATAACGCCCCCACCcagccacc                            <  1:15844783‑M2/35‑9 (MQ=255)
        aCGTTGGGCAGTGATAACGCCCCCACCcagccacc                            <  1:14141979‑M2/35‑9 (MQ=255)
         cGTTGGGCAGTGATAACGCCCGCACCCAGCCACCt                           <  1:11909411/35‑1 (MQ=255)
         cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt                           <  1:16069012/35‑1 (MQ=255)
         cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt                           <  1:18506625/35‑1 (MQ=255)
         cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt                           <  1:13582016/35‑1 (MQ=255)
         cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt                           >  1:9676080/1‑35 (MQ=255)
           ttGGGCAGTGATAACGCCCCCACCCAGCCACCTaa                         <  1:9083449/35‑1 (MQ=255)
             gggCAGCGATAACGCCCCCACCCAGCCACCTAAAg                       >  1:15038974/1‑35 (MQ=255)
              ggCAGTGATAACGCCCCCACCCAGCCACCTAAAgc                      <  1:18613818/35‑1 (MQ=255)
               gCAGTGATAACGCCCCCACCCAGCCACCTAAAgcg                     <  1:12996258/35‑1 (MQ=255)
               gCAGTGATAACGCCCCCACCCAGCCACCTAAAgcg                     >  1:6836959/1‑35 (MQ=255)
                cAGTGATAACGCCCCCACCCAGCCACCTAAAgctg                    >  1:10349810/1‑33 (MQ=255)
                cAGTGATAACGCCCCCACCCAGCCACCTAAAgcgg                    >  1:5334558/1‑35 (MQ=255)
                 aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc                   <  1:10689511/35‑1 (MQ=255)
                 aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc                   >  1:12408472/1‑35 (MQ=255)
                 aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc                   <  1:15138074/35‑1 (MQ=255)
                 aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc                   <  1:7259190/35‑1 (MQ=255)
                 aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc                   >  1:8580728/1‑35 (MQ=255)
                 aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc                   >  1:8303563/1‑35 (MQ=255)
                  gTGATAACGCCCCCACCCAGCCACCTAAAgcggcg                  <  1:4102563/35‑1 (MQ=255)
                  gTGATAACGCCCCCACCCAGCCACCTAAAgcggcg                  <  1:15690124/35‑1 (MQ=255)
                   tGATAGCGCCCCCACCCAGCCACCTAAAGCGGCGa                 <  1:17336780/35‑1 (MQ=255)
                   tGATAACGCCCCCACCCAGCCACCTAAAGCGGCGa                 <  1:6094578/35‑1 (MQ=255)
                      tAACGCCCCCACCCAGCCACCTAAAGCGGCGAaga              <  1:7490137/35‑1 (MQ=255)
                       aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag             <  1:4956757/35‑1 (MQ=255)
                       aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag             <  1:9737489/35‑1 (MQ=255)
                       aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag             >  1:617903/1‑35 (MQ=255)
                       aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag             <  1:16305872/35‑1 (MQ=255)
                        ccGCCCACACCCAGCCACCTAAAGCGGCGAAGAGt            <  1:16348231/34‑1 (MQ=255)
                        aCGCCCCCACCCAGCCACCTAAAGCGGCGAagagc            >  1:3329835/1‑34 (MQ=255)
                        aCGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGt            >  1:2371598/1‑35 (MQ=255)
                        aCGCCCCCAACCAGCCAgcgcggatttgccccaac            <  1:13334631‑M1/35‑19 (MQ=255)
                         cccccccacCCAGCCAgcgcggatttgccccaacg           <  1:19648944‑M1/33‑20 (MQ=255)
                         cGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGTa           <  1:14048577/35‑1 (MQ=255)
                          gcacccacccagccAgcgcggatttgccccaacgg          <  1:12857338‑M1/32‑21 (MQ=255)
                          gCCCCCCCCcagccaccaagcaggaagatatgacg          >  1:6659227‑M2/1‑9 (MQ=255)
                          gCCCCCACCCAGCCAgcgcggatttgccccaacgg          <  1:17460161‑M1/35‑21 (MQ=255)
                          cccccccCCcagccaccaaaaacaagccagaaagt          >  1:17952655‑M2/2‑9 (MQ=255)
                          ccccccaCCCAGCCAgcgcggatttgccccaacgg          <  1:17683028‑M1/34‑21 (MQ=255)
                          ccccccaCCCAGCCAgcgcggatttgccccaacgg          <  1:9301780‑M1/34‑21 (MQ=255)
                           cccccCCCcagccaccaaaaacaagccagaaagta         >  1:4651634‑M2/1‑8 (MQ=255)
                           cccccACCCAGCCAgcgcggatttgccccaacggt         <  1:19894792‑M1/35‑22 (MQ=255)
                           cccccACCCAGCCAgcgcggatttgccccaacggt         <  1:1692492‑M1/35‑22 (MQ=255)
                           cacccacccagcCggaacaacagttacccagatgt         <  1:5220360‑M1/33‑23 (MQ=255)
                            gcccatccagCCggaacaacagttacccagatgta        <  1:18790681‑M1/34‑24 (MQ=255)
                            ccccCCCcagccaccaagcaggaagatatgacgca        >  1:18643903‑M2/1‑7 (MQ=255)
                            ccccCCCcagccaccaaaaacaagccagaaagtac        >  1:15965649‑M2/1‑7 (MQ=255)
                            ccccCCCcagccaccaaaaacaagccagaaagtac        >  1:4724000‑M2/1‑7 (MQ=255)
                            ccccCCCCAGCCAgcgcggatttgccccaacggta        <  1:4383169‑M1/35‑23 (MQ=255)
                            ccccACCCAGCCAgcgcggatttgccccaacggta        <  1:5633891‑M1/35‑23 (MQ=255)
                            ccccACCCAGCCAgcgcggatttgccccaacggta        <  1:17235531‑M1/35‑23 (MQ=255)
                            ccccACCCAGCCACCTAAAGCGGCGAAGAGTAATa        >  1:13027472/1‑35 (MQ=255)
                            ccccACCCAGCCACCTAAAGCGGCGAAGAGTAATa        >  1:3586085/1‑35 (MQ=255)
                            ccccACCCAGCCACCTAAAGCGGCGAAGAGTAATa        <  1:19048868/35‑1 (MQ=255)
                            ccccACCCAGCCACCTAAAGCGGCGAAGAGTAATa        >  1:10634006/1‑35 (MQ=255)
                             cccccccagccaccaaaaacaagccagaaagtacc       >  1:12108399‑M2/1‑6 (MQ=255)
                             cccccccagccaccaaaaacaagccagaaagtacc       >  1:11003722‑M2/1‑6 (MQ=255)
                             cccacccaGCCAgcgcggatttgccccaacggtac       <  1:2481547‑M1/35‑24 (MQ=255)
                             cacacccaGCCACCTAAAGCGGCGAAGAGTAATAc       <  1:11960108/33‑1 (MQ=255)
                              ccccccagccggaacaacagttacccagatgtatt      <  1:19816176‑M1/32‑26 (MQ=255)
                              ccccccagccaccaagcaggaagatatgacgcagt      >  1:20538303‑M2/1‑5 (MQ=255)
                              ccccccagccAgcgcggatttgccccaacggtacg      <  1:579143‑M1/32‑25 (MQ=255)
                              ccacccaGCCggaacaacagttacccagatgtatt      <  1:18266741‑M1/35‑26 (MQ=255)
                              ccacccaGCCACCTAAAGCGGCGAAGAGTAATACa      <  1:17127316/35‑1 (MQ=255)
                               cccccagccaccaagcaggaagatatgacgcagtt     >  1:13805929‑M2/3‑4 (MQ=255)
                               cccccagccaccaaaaacaagccagaaagtaccaa     >  1:7737844‑M2/3‑4 (MQ=255)
                                ccccagccaccaagcaggaagatatgacgcagttt    >  1:13517933‑M2/2‑3 (MQ=255)
                                ccccagCCggaacaacagttacccagatgtattgg    <  1:11037905‑M1/34‑28 (MQ=255)
                                ccccagCCggaacaacagttacccagatgtattgg    <  1:3404639‑M1/34‑28 (MQ=255)
                                acccaGCCggaacaacagttacccagatgtattgg    <  1:12326781‑M1/35‑28 (MQ=255)
                                acccaGCCAgcgcggatttgccccaacggtacgcg    <  1:5540549‑M1/35‑27 (MQ=255)
                                acccaGCCAgcgcggatttgccccaacggtacgcg    <  1:19264190‑M1/35‑27 (MQ=255)
                                acccaGCCACCTAAAGCGGCGAAGAGTAATACATc    >  1:8347669/1‑35 (MQ=255)
                                acccaGCCACCTAAAGCGGCGAAGAGTAATACATc    >  1:15998529/1‑35 (MQ=255)
                                 cccagccaccaagcaggaagatatgacgcagtttt   >  1:16795657‑M2/1‑2 (MQ=255)
                                 cccaGCCggaacaacagttacccagatgtattggg   <  1:11440962‑M1/35‑29 (MQ=255)
                                 cccaGCCAgcgcggatttgccccaacggtacgcgg   <  1:7806011‑M1/35‑28 (MQ=255)
                                 cccaGCCACCTAAAGCGGCGAAGAGTAATACATCg   <  1:10955903/35‑1 (MQ=255)
                                 cccaGCCACCTAAAGCGGCGAAGAGTAATACATCg   <  1:2838964/35‑1 (MQ=255)
                                 accagccagcggggatttgccccaacggtacgcgg   <  1:7532043‑M1/34‑28 (MQ=255)
                                  ccagccaccaagcaggaagatatgacgcagttttt  >  1:12961045‑M2/1‑1 (MQ=255)
                                  ccagccaccaagcaggaagatatgacgcagttttt  >  1:1005664‑M2/1‑1 (MQ=255)
                                  ccacccaccaaaaacaagccagaaagtaccaaaac  >  1:15182456‑M2/1‑1 (MQ=255)
                                  ccaGCCACCTAAAGCTGCGAAGAGTAATACATCGc  >  1:19449387/1‑35 (MQ=255)
                                  ccaGCCACCTAAAGCGGCGAAGAGTAATACATCGc  >  1:10882918/1‑35 (MQ=255)
                                  |                                  
TTAAAGCAACGTTGGGCAGTGATAACGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGTAATACATCGC  >  REL606/3040599‑3040667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.