New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2532852 =62 (0.600)3 (0.040) 3/40 NT 4.7% coding (127/2007 nt) hyfR DNA‑binding transcriptional activator, formate sensing
?REL606 4530131 = 69 (0.810)coding (410/903 nt) fimH minor component of type 1 fimbriae

Only 100 of 130 total aligned reads displayed.

GTGGCGCTTTATTTGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGCC  >  REL606/4530097‑4530165
                                  |                                  
gTGGCGCTTTATTTGACGCCTGTGAGCAGTgcggg                                    <  1:7778830/35‑1 (MQ=255)
gTGGCGCTTTATTTGACGCCTGTGAGCAGTgcggg                                    <  1:2448204/35‑1 (MQ=255)
 ttcaataagttgtaccgggctgaacggcggggggg                                   >  1:7744493‑M2/34‑34 (MQ=255)
 ttcaataagttgtaccgggctgaacggcgggggga                                   >  1:4892402‑M2/34‑34 (MQ=255)
 ttcaataagttgtaccgggctgaacggcggcgggg                                   >  1:15850381‑M2/34‑34 (MQ=255)
 ttcaataagttgtaccgggctgaacggcggcgggg                                   >  1:15367478‑M2/34‑34 (MQ=255)
 ttcaataagttgtaccgggctgaacggcggcgggc                                   >  1:796138‑M2/34‑35 (MQ=255)
 tGGCGCTTTATTTGACGCCTGTGAGCAGTgtgggc                                   <  1:11739081/35‑1 (MQ=255)
 tGGCGCTTTATTTGACGCCTGTGAGCAGTgcgggc                                   <  1:8748418/35‑1 (MQ=255)
 tGGCGCTTTATTTGACGCCTGTGAGCAGTgcgggc                                   <  1:13138078/35‑1 (MQ=255)
 tGGCGCTTTATTTGACGCCTGTGAGCAGTgcgggc                                   <  1:11950320/35‑1 (MQ=255)
 tGGCGCTTTATTTGACGCCTGTGAGCAGTgcgggc                                   <  1:11731409/35‑1 (MQ=255)
 tGGCGCTTTATTTGACGCATGTGAGCAGTgcgggc                                   <  1:740008/35‑1 (MQ=255)
  tcaataagttgtaccgggctgaacggcggcggggg                                  >  1:5901981‑M2/33‑33 (MQ=255)
  tcaataagttgtaccgggctgaacggcggcgggag                                  >  1:6671856‑M2/33‑33 (MQ=255)
  ggCGCTTTATTTGACGCCTGTGAGCAGTgcgggcg                                  >  1:17672291/1‑35 (MQ=255)
   gggcTGTATTTGACGCCTGTGGGCAGTtcgggcgg                                 <  1:8719629/33‑1 (MQ=21)
   gcgcTTTATTTGACGCCTGTGAGCAGTgcgggcgg                                 <  1:13826766/35‑1 (MQ=255)
    aataagttgtaccgggctgaacggcggcgggaggg                                >  1:11302816‑M2/31‑35 (MQ=255)
     gcTTTATTTGACGCCTGTGAGCAGTGCGGGCgggg                               >  1:6091568/1‑35 (MQ=255)
     gcTTTATCTGACGCCTGTGAGCAGTGCGGGCgggg                               >  1:87640/1‑35 (MQ=255)
     ataagttgtaccgggctgaacggcggcggGGgggg                               >  1:13811607‑M2/30‑35 (MQ=255)
      cTTTATTTGACGCCTGTGAGCAGTGCGGGCggggg                              >  1:8762683/1‑35 (MQ=255)
      cTTTATTTGACGCCTGTGAGCAGTGCGGGCggggg                              >  1:10372524/1‑35 (MQ=255)
       tttATTTGACGCCTGTGAGCAGTGTGGGCgggggg                             <  1:8340646/35‑1 (MQ=255)
       tttATTTGACGCCTGTGAGCAGTGCGGGCgggggg                             <  1:7627447/35‑1 (MQ=255)
        ttATTTTACGCCTGTGAGCAGTGCGGGCggggggg                            >  1:13473553/1‑35 (MQ=255)
        ttATTTGACGCCTGTGAGCAGTGCGGGCggggggg                            >  1:13876416/1‑35 (MQ=255)
        ttATTTGACGCCTGTGAGCAGTGCGGGCggggggg                            >  1:12346784/1‑35 (MQ=255)
        ttATTTGACGCCTGTGAGCAGTGCGGGCggggggg                            <  1:14940928/35‑1 (MQ=255)
        ttATTTGACGCCTGTGAGCAGTGCGGGCggggggg                            >  1:7196325/1‑35 (MQ=255)
        agttgtaccgggctgaacggcggcggGCggggggg                            >  1:4744017‑M2/27‑35 (MQ=255)
         tATTTGACGCCTGTGAGCAGTGCGGGCGGGGGGGc                           <  1:16484466/35‑1 (MQ=255)
          aTTTGACGCCTGTGAGCAGTGCGGGCGGGGGGGCg                          <  1:14643640/35‑1 (MQ=255)
          aTTTGACGCCTGTGAGCAGTGCGGGCGGGGGGGCg                          >  1:1802559/1‑35 (MQ=255)
          aTTTGACGCCTGTGAGCAGTGCGGGCGGGGGGGCg                          >  1:7694776/1‑35 (MQ=255)
           tttGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGa                         <  1:4730087/35‑1 (MQ=255)
           tttGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGa                         <  1:11192071/35‑1 (MQ=255)
           tgtaccgggctgaacggcggcggGCGGGGGGGGGa                         >  1:8961613‑M2/24‑35 (MQ=255)
            ttGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAt                        >  1:15540289/1‑35 (MQ=255)
            ttGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAt                        <  1:5842269/35‑1 (MQ=255)
            ttGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAt                        <  1:17203640/35‑1 (MQ=255)
            ttGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAt                        >  1:7294753/1‑35 (MQ=255)
             tGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAtt                       >  1:10642299/1‑35 (MQ=255)
             tGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAtt                       <  1:11087406/35‑1 (MQ=255)
             tGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAtt                       <  1:15923151/35‑1 (MQ=255)
             tGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAtt                       <  1:15986205/35‑1 (MQ=255)
             tGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAtt                       <  1:15898/35‑1 (MQ=255)
             tGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGAtt                       >  1:14575015/1‑35 (MQ=255)
              gACGCCTGTGAGCAGTGCGGGCGGGGGGGCGATTa                      >  1:7823788/1‑35 (MQ=255)
               aCGCCTGTGAGCAGTGCGGGCGGGGGGGCGATTaa                     <  1:18438576/35‑1 (MQ=255)
               aCGCCTGTGAGCAGTGCGGGCGGGGGGGCGATTaa                     <  1:12809315/35‑1 (MQ=255)
                cGCCTGTGAGCAGTGCGGGCGGGGGGGCGATTaaa                    <  1:9185322/35‑1 (MQ=255)
                 gCCTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAg                   <  1:7044164/35‑1 (MQ=255)
                 gCCTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAg                   <  1:367224/35‑1 (MQ=255)
                  ccTGTGAGCAGTGCGTGCGGGGGGGCGATTAAAGc                  >  1:19647579/1‑35 (MQ=255)
                  ccTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAGc                  >  1:12555677/1‑35 (MQ=255)
                  ccTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAGc                  >  1:11271639/1‑35 (MQ=255)
                   cTGTGAGCAGTGCGGGCGGGGGGGCGATTAAATCt                 <  1:11282296/35‑1 (MQ=255)
                   cTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAGCt                 >  1:6803872/1‑35 (MQ=255)
                   cTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAGCt                 <  1:17058750/35‑1 (MQ=255)
                   cTGTGAGCAGTGCGGGCGGGGGGGCGAGTAAAGca                 >  1:14786692/1‑34 (MQ=255)
                    tgtgAGCAGTGCGGGCGGGGGGGCGATTAAAGCTg                <  1:4339841/35‑1 (MQ=255)
                    tgtgAGCAGTGCGGGCGGGGGGGCGATTAAAGCTg                >  1:2282980/1‑35 (MQ=255)
                     gtgAGCAGTGCGGGCGGGGGGGCGATTAAAGCTgg               >  1:14269002/1‑35 (MQ=255)
                     gtgAGCAGTGCGGGCGGGGGGGCGATTAAAGCTgg               <  1:7031607/35‑1 (MQ=255)
                      tgAGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGc              <  1:9800727/35‑1 (MQ=255)
                       taGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCt             <  1:2465070/34‑1 (MQ=255)
                       gAGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCt             >  1:11607284/1‑35 (MQ=255)
                       gAGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCt             <  1:418769/35‑1 (MQ=255)
                        aGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTc            >  1:9625046/1‑35 (MQ=255)
                        aGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTc            >  1:13591693/1‑35 (MQ=255)
                        aGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTc            <  1:19515046/35‑1 (MQ=255)
                         gCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCa           >  1:2330392/1‑35 (MQ=255)
                         gCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCa           <  1:12163455/35‑1 (MQ=255)
                         gCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCa           <  1:4046682/35‑1 (MQ=255)
                         gCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCa           >  1:8756981/1‑35 (MQ=255)
                           aGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCAtt         <  1:11923592/35‑1 (MQ=255)
                           aGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCAtt         >  1:5613391/1‑35 (MQ=255)
                           aGTGAGGGCGGGGGGGCGATTAAAGCTGGCTCAtt         <  1:16077209/35‑1 (MQ=255)
                            gTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTa        >  1:4745604/1‑35 (MQ=255)
                            gTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTa        <  1:9577704/35‑1 (MQ=255)
                            gTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTa        <  1:9068432/35‑1 (MQ=255)
                            gTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTa        >  1:13424942/1‑35 (MQ=255)
                            gTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTa        <  1:168580/35‑1 (MQ=255)
                             tGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTaa       <  1:20124601/35‑1 (MQ=255)
                              gcggGCGGGGGGGCGATTAAAGCTGGCTCATTAAt      <  1:7817126‑M2/31‑1 (MQ=255)
                               cggGCGGGGGGGCGATTAAAGCTGGCTCATTAAtt     <  1:16560927‑M2/32‑1 (MQ=255)
                               cggGCGGGGGGGCGATTAAAGCTGGCTCATTAAtt     <  1:18886377‑M2/32‑1 (MQ=255)
                               cggGCGGGGGGGCGATTAAAGCTGGCTCATTAAtt     >  1:3534207‑M2/4‑35 (MQ=255)
                               cggGCGGGGGGGCGATTAAAGCTGGCTCATTAAtt     >  1:6782857‑M2/4‑35 (MQ=255)
                                ggGCGGGGGGGCGATTAAAGCTGTCTCATTAATTg    >  1:6604039‑M2/3‑35 (MQ=255)
                                ggGCGGGGGGGCGATTAAAGCTGGCTCATTAATTg    >  1:20171663‑M2/3‑35 (MQ=255)
                                ggGCGGGGGGGCGATTAAAGCTGGCTCATTAATTg    <  1:5178215‑M2/33‑1 (MQ=255)
                                 gGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGc   <  1:17725739‑M2/34‑1 (MQ=255)
                                 gGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGc   >  1:5574841‑M2/2‑35 (MQ=255)
                                 gGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGc   <  1:20233775‑M2/34‑1 (MQ=255)
                                 gGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGc   <  1:6451277‑M2/34‑1 (MQ=255)
                                 gGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGc   >  1:9214707‑M2/2‑35 (MQ=255)
                                  gcgggGGGGCGATTAAAGCTGGCTCATTAATTGcc  >  1:4515992/1‑35 (MQ=255)
                                  |                                  
GTGGCGCTTTATTTGACGCCTGTGAGCAGTGCGGGCGGGGGGGCGATTAAAGCTGGCTCATTAATTGCC  >  REL606/4530097‑4530165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.