New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2749601 | 109 (1.060) | 21 (0.230) | 6/42 | NT | 19.0% | coding (404/2079 nt) | fhlA | DNA‑binding transcriptional activator |
? | REL606 | 4351442 = | 84 (0.930) | intergenic (+50/‑88) | groEL/yjeI | chaperonin GroEL/hypothetical protein |
GCCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2749566‑2749601 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGGGGTTTTTCTTTT > REL606/4351442‑4351455 GCCACTGGCGGCGGAAGGGCATATTTTTGGTGGCT < 1:16900335/35‑1 CCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG < 1:6692878/35‑1 CCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG < 1:12349933/35‑1 CCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG < 1:571821/35‑1 CCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG < 1:15666974/35‑1 CCACTGGCGGCGGAAGGGCATATTTTTGCTGGCTa < 1:486823/35‑2 CTGGCGGCGGAAGGGCATATTTTTGGTGGCTGGGG > 1:14204639/1‑35 GGCGGCGGAAGGGCATATTTTTGGTGGCTGGGGGg > 1:12195956/1‑34 GGCGGCGGAAGGGCATATTTTTGGTGGCTGGGGGg > 1:16711175/1‑34 CGGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTT > 1:6121710/1‑35 CGGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTT > 1:13421852/1‑35 CGGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTT > 1:19740305/1‑35 CGGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTT > 1:19443172/1‑35 CGGCGGAAGGGCATATTTTTGGTGGCTGGGGGATT > 1:12194571/1‑35 GGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTTT > 1:9153661/1‑35 GGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTTT > 1:7550784/1‑35 GGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTTT > 1:14316633/1‑35 GGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTTT > 1:6150378/1‑35 GGCGGAAGGGCATATTTTTGGTGGCTGGGGGATTT > 1:7299187/1‑35 GGCGGAAGGGCATATTTTTGGTGGCTGGGGATTTT > 1:1315891/1‑35 GCGGAAGGGCATATTTTTGGTGGCTGGGGGTTTTT > 1:18550005/1‑35 GCGGAAGGGCATATTTTTGGTGGCTGGGGGGTTTT > 1:14240486/1‑35 GCGGAAGGGCATATTTTTGGTGGCTGGGGGATTTT > 1:260701/1‑35 CGGAAGGGCATATTTTTGGTGGCTGGGGGTTTTTt > 1:4112033/1‑34 CGGAAGGGCATATTTTTGGTGGCTGGGGGTGTTTt > 1:926906/1‑34 CGGAAGGGCATATTTTTGGTGGCTGGGGGGTTTTt > 1:1766910/1‑34 GGAAGGGCATATTTTTGGTGGCTGGGGGTTTTTtt > 1:1805405/1‑33 GAAGGGCATATTTTTGGTGGCTGGGGGTTTTTTTT > 1:17528116/1‑35 AAGGGCATATTTTTGGTGGCTGGGGGTTTTTTTTT > 1:2435610/1‑35 AGGGCATATTTTTGGTGGCTGGGGGTTTTTTTTTT > 1:764069/1‑35 GCCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2749566‑2749601 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGGGGTTTTTCTTTT > REL606/4351442‑4351455 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |