New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1050924 = | 43 (0.420) | 6 (0.070) | 4/40 | NT | 9.8% | coding (580/1794 nt) | hyaB | hydrogenase 1, large subunit |
? | REL606 | 1543472 = | 75 (0.880) | coding (969/1536 nt) | xasA | predicted glutamate:gamma‑aminobutyric acid antiporter |
TAGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1050961‑1050924 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGTTTTTCTGCGCTGTGACATACATCCCGCGAGAA > REL606/1543472‑1543505 TAGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGG > 1:600832/1‑35 TAGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGG > 1:17962676/1‑35 AGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGC < 1:12150663/35‑1 AGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGC > 1:13576992/1‑35 AGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGC > 1:14712614/1‑35 AGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGC > 1:15870577/1‑35 AGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGC > 1:2173656/1‑35 GTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGga > 1:7149102/1‑33 GTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGCA > 1:3628723/1‑35 GTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGCA > 1:14453982/1‑35 GTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGCA < 1:6637864/35‑1 TGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGCAG > 1:5641613/1‑35 TGGGCAAAGCCCATAAGGTTAGCTTCTGGCGGCAG < 1:16700321/35‑1 GGGCAAAGCCCATCAGGTTAGCTTCTGGCGGGAGG > 1:8813202/1‑35 gtCAAAGCCCATCAGGTTAGCTTCTGGCGGCAGGT > 1:18608517/3‑35 GGCAAAGCCCATCAGGTTAGCTTCTGGCGGGAGGT > 1:1977307/1‑35 CAAAGCCCATCAGGTTAGCTTCTGGCGGCAGGTTT > 1:1929828/1‑35 CAAAGCCCATCAGGTTAGCTTCTGGCGGCAGGTTT > 1:4022043/1‑35 AAAGCCCATCAGGTTAGCTTCTGGCGGCAGGTTgt > 1:8452009/1‑33 AAAGCCCATCAGGTTAGCTTCTGGCGGCAGGTTTT > 1:14019352/1‑35 AAGCCCATCAGGTTAGCTTCTGGCGGCAGGTTTTT > 1:5579537/1‑35 AGCCCATCAGGTTAGCTTCTGGCGGCAGGTTTTTa > 1:12317471/1‑34 AGCCCATCAGGTTAGCTTCTGGCGGCAGGTTTTTC > 1:2498755/1‑35 GCCCATCAGGTTAGCTTCTGGCGGCAGGTTTTTCT > 1:1695568/1‑35 CCCATCAGGTTAGCTTCTGGCGGCCGGTTTTTCTt > 1:3673906/1‑34 CCATCAGGTTAGCTTCTGGCGGCAGGTTTTTATGC > 1:8598559/1‑35 GCAGGTTTTTCTGCGCTGTGACATACATCCCGCGA < 1:50841/35‑1 CAGGTTTTTCTGCGCTGTGACATACATCCCGCGAG > 1:7340066/1‑35 CAGGTTTTTCTGCGCTGTGACATACATCCCGCGAG > 1:4176488/1‑35 CAGGTTTTTCTGCGCTGTGACATACATCCCGCGAG < 1:3357710/35‑1 CAGGTTTTTCTGCGCTGTGACATACATCCCGCGAG < 1:20433569/35‑1 CAGGTTTTTCTGCGCTGTGACATACATCCCGCGAG > 1:14054279/1‑35 AGGTTTTTCTGCGCTGTGACATACGTCCCGCGAGA < 1:1893952/35‑1 AGGTTTTTCTGCGCTGTGACATACATCCCGCGAGA > 1:4967064/1‑35 AGGTTTTTCTGCGCTGTGACATACATCCCGCGAGA < 1:4947865/35‑1 AGGTTTTTCTGCGCTGTGACATACATCCCGCGAGA > 1:577641/1‑35 AGGTTTTTCTGCGCTGTGACATACATCCCGCGAGA < 1:3931588/35‑1 AGGTTTTTCTGCGCTGTGACATACATCCCGCGAGA > 1:6570085/1‑35 AGGTTTTTCTGCGCTGTGACATACATCCCGCGAGA > 1:16178126/1‑35 GGTTTTTCTGCGCTGTGACATACATCCCGCGAGAA < 1:5295241/35‑1 GGTTTTTCTGCGCTGTGACATACATCCCGCGAGAA < 1:12028257/35‑1 TAGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1050961‑1050924 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGTTTTTCTGCGCTGTGACATACATCCCGCGAGAA > REL606/1543472‑1543505 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |