New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1398219108 (1.050)6 (0.090) 3/32 NT 8.5% coding (725/1527 nt) abgT predicted cryptic aminobenzoyl‑glutamate transporter
?REL606 = 1743481 58 (0.850)coding (2472/3057 nt) ydiJ predicted FAD‑linked oxidoreductase

Only 100 of 117 total aligned reads displayed.

CGGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1398178‑1398219
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccattTTCACCAAATGGCAAAGCCCAGCATATCAAAGGC  <  REL606/1743481‑1743448
                                                                            
CGGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCC                                           >  1:15671182/1‑35
CGGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCC                                           <  1:14244335/35‑1
CGGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCC                                           >  1:7705789/1‑35
CGGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCC                                           <  1:12725337/35‑1
CGGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCC                                           >  1:13678264/1‑35
 GGTCAATGTCTGCAGTTTCTCCTCGCTGTTTCCCT                                          >  1:20175198/1‑35
 GGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCCT                                          >  1:11239392/1‑35
 GGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCCT                                          >  1:8330195/1‑35
 GGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCCT                                          <  1:5172942/35‑1
 GGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCCT                                          <  1:1371348/35‑1
 GGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCCT                                          <  1:7174806/35‑1
  GTCAATGTCTGCAGTTTCTCATCGCTGTTTCCCTG                                         >  1:16729502/1‑35
  GTCAATGTCTGCAGTTTCTCATCGCTGTTTCCCTG                                         <  1:14886074/35‑1
  GTCAATGTCTGCAGTTTCTCATCGCTGTTTCCCTG                                         <  1:9477427/35‑1
    CAATGTCTGCAGTTTCTCATCGCTGTTTCCCTGCC                                       >  1:10554852/1‑35
    CAATGTCTGCAGTTTCTCATCGCTGTTTCCCTGCC                                       <  1:16611452/35‑1
    CAATGTCTGCAGTTTCTCATCGCTGTTTCCCTGCC                                       >  1:16784477/1‑35
    CAATGTCTGCAGTTTCTCATCGCTGTTTCCCTGCC                                       >  1:16886679/1‑35
    CAATGTCTGCAGTTTCTCATCGCTGTTTCCCTGCC                                       >  1:15044257/1‑35
    CAATGTCTGCAGTTTCTCATCGCTGTTTCCCTGCC                                       >  1:8630188/1‑35
    CAATGTCTGCAGTTTCTCATCGCTGTTTCCCTGCC                                       <  1:3996352/35‑1
    CAATGTATGCAGTTTCTCATCGCTGTTTCCCTGCC                                       <  1:6850895/35‑1
     AATGTCTGCAGTTTCTCATCGCTGTTTCCGTGCCA                                      <  1:18644798/35‑1
     AATGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCA                                      <  1:4802809/35‑1
     AATGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCA                                      <  1:11951880/35‑1
       TGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATT                                    >  1:2177645/1‑35
       TGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATT                                    >  1:20597456/1‑35
       TGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATT                                    >  1:8103131/1‑35
       TGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATT                                    >  1:9776269/1‑35
       TGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATT                                    >  1:8094398/1‑35
       TGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATT                                    >  1:552323/1‑35
                         cCTGTGTCCCTGCCATTTTCACCAAATGGCAAAGC                  <  1:12280788/34‑1
                          CTGTTTCCCTGCCATTTTCACCAAATGGCAAAGCC                 <  1:6355704/35‑1
                           TGTGTCCCTGCCATTTTCACCAAATGGCAAAGCCC                <  1:19954229/35‑1
                            ttgTCCCTGCCATTTTCACCAAATGGCAAAGCCCA               <  1:5603668/32‑1
                            gtgTCCCTGCCATTTTCACCAAATGGCAAAGCCCA               <  1:2397302/32‑1
                            GTTTCCCTGCCATTTTCACCAAATGGCAAAGCCCA               <  1:4836768/35‑1
                             tcTCCCTGCCATTTTCACCAAATGGCAAAGCCCAG              <  1:18257719/33‑1
                             TTTCCCTGCCATTTTCACCAAATGGCAAAGCCCAG              <  1:11752041/35‑1
                              gTCCCTGCCATTTTCACCAAATGGCAAAGCCCAGC             <  1:4821420/34‑1
                              TTCCCTGCCATTTTCACCAAATGGCAAAGCCCAGC             <  1:5315197/35‑1
                               TCCCTGCCATTTTCACCAAATGGCAAAGCCCAGCA            <  1:1328505/35‑1
                               TCCCTGCCATTTTCACCAAATGGCAAAGCCCAGCA            <  1:15912276/35‑1
                               TCCCTGCCATTTTCACCAAATGGCAAAGCCCAGCA            <  1:2696232/35‑1
                                CCCTGCCATTTTCACCAAATGGCAAAGCCCAGCAT           <  1:6845051/35‑1
                                CCCTGCCATTTTCACCAAATGGCAAAGCCCAGCAT           <  1:14657683/35‑1
                                CCCTGCCATTTTCACCAAATGGCAAAGCCCAGCAT           <  1:11403994/35‑1
                                CCCTGCCATTTTCACCAAATGGCAAAGCCCAGCAT           <  1:17097199/35‑1
                                CCCTGCCATTTTCACCAAATGGCAAAGCCCAGCAT           <  1:19921442/35‑1
                                CCCTGCCATTTTCACCAAATGGCAAAGCCCAGCAT           <  1:11001725/35‑1
                                 CCTGCCATTTTCACCAAATGGCAAAGCCCAGCATA          <  1:1985019/35‑1
                                 CCTGCCATTTTCACCAAATGGCAAAGCCCAGCATA          <  1:16076028/35‑1
                                 CCTGCCATTTTCACCAAATGGCAAAGCCCAGCATA          <  1:4395690/35‑1
                                 CCTGCCATTTTCACCAAATGGCAAAGCCCAGCATA          <  1:7559619/35‑1
                                 CCTGCCATTTTAACCAAATGGCAAAGCCCAGCATA          <  1:4713196/35‑1
                                  CTGCCATTTTCACCAAATGGCAAAGCCCAGCATAT         <  1:5298693/35‑1
                                  CTGCCATTTTCACCAAATGGCAAAGCCCAGCATAT         >  1:7365372/1‑35
                                  CTGCCATTTTCACCAAATGGCAAAGCCCAGCATAT         >  1:9362822/1‑35
                                  CTGCCATTTTCACCAAATGGCAAAGCCCAGCATAT         >  1:14653790/1‑35
                                  CTGCCATTTTCACCAAATGGCAAAGCCCAGCATAT         <  1:10656369/35‑1
                                  CTGCCATTTTCACCAAATGGCAAAGCCCAGCATAT         >  1:3759504/1‑35
                                  CTGCCATTTTCACCAAATGGCAAAGCCCAGCATAT         <  1:858670/35‑1
                                  CTGCCATTTTCACCAAATGGCAAAGCCCAGCATAT         <  1:15825591/35‑1
                                   TGCCATTTTCACCAAATGGCAAAGCCCAGCATATC        <  1:15324365/35‑1
                                    GCCATTTTCACCAAATGGCAAAGCCCAGCATATCA       <  1:4071585/35‑1
                                    GCCATTTTCACCAAATGGCAAAGCCCAGCATATCA       >  1:3130224/1‑35
                                    GCCATTTTCACCAAATGGCAAAGCCCAGCATATCA       >  1:20007338/1‑35
                                    GCCATTTTCACCAAATGGCAAAGCCCAGCATATCA       >  1:17965527/1‑35
                                    GCCATTTTCACCAAATGGCAAAGCCCAGCATATCA       <  1:8597862/35‑1
                                    GCCATTTTCACCAAATGGCAAAGCCCAGCATATCA       <  1:12462770/35‑1
                                    GCCATTTTCACCAAATGGCAAAGCCCAGCATATCA       >  1:20582678/1‑35
                                     CCATTTTCACCAAATGGCAAAGCCCAGCATATCAA      >  1:6459844/1‑35
                                     CCATTTTCACCAAATGGCAAAGCCCAGCATATCAA      <  1:6532684/35‑1
                                     CCATTTTCACCAAATGGCAAAGCCCAGCATATCAA      >  1:13616212/1‑35
                                     CCATTTTCACCAAATGGCAAAGCCCAGCATATCAA      <  1:7065525/35‑1
                                     CCATTTTCACCAAATGGCAAAGCCCAGCATATCAA      <  1:4614340/35‑1
                                     CCATTTTCACCAAATGGCAAAGCCCAGCATATCAA      <  1:4093239/35‑1
                                     CCATTTTCACCAAATGGCAAAGCCCAGCATATCAA      <  1:19438295/35‑1
                                     CCATTTTCACCAAATGGCAAAGCCCAGCATATCAA      <  1:19485022/35‑1
                                      CATTTTCACCAAATGGCAAAGCCCAGCATATCAAA     <  1:9454442/35‑1
                                      CATTTTCACCAAATGGCAAAGCCCAGCATATCAAA     >  1:10631489/1‑35
                                      CATTTTCACCAAATGGCAAAGCCCAGCATATCAAA     >  1:16741303/1‑35
                                      CATTTTCACCAAATGGCAAAGCCCAGCATATCAAA     >  1:5321620/1‑35
                                      CATTTTCACCAAATGGCAAAGCCCAGCATATCAAA     <  1:18730550/35‑1
                                       ATTTTCACCAAATGGCAAAGCCCAGCATATCAAAG    >  1:13920991/1‑35
                                        TTTTCACCAAATGGCAAAGCCCAGCATATCAAAGG   <  1:17761999/35‑1
                                        TTTTCACCAAATGGCAAAGCCCAGCATATCAAAGG   <  1:355730/35‑1
                                        TTTTCACCAAATGGCAAAGCCCAGCATATCAAAGG   >  1:20611052/1‑35
                                        TTTTCACCAAATGGCAAAGCCCAGCATATCAAAGG   >  1:14922342/1‑35
                                        TTTTCACCAAATGGCAAAGCCCAGCATATCAAAGG   <  1:8191266/35‑1
                                         TTTCACCAAATGGCAAAGCCCAGCATATCAAAaga  >  1:5709652/1‑32
                                         TTTCACCAAATGGCAAAGCCCAGCATATCAAAGGC  >  1:8230511/1‑35
                                         TTTCACCAAATGGCAAAGCCCAGCATATCAAAGGC  <  1:3059685/35‑1
                                         TTTCACCAAATGGCAAAGCCCAGCATATCAAAGGC  <  1:3421713/35‑1
                                         TTTCACCAAATGGCAAAGCCCAGCATATCAAAGGC  >  1:1205558/1‑35
                                         TTTCACCAAATGGCAAAGCCCAGCATATCAAAGGC  <  1:3515313/35‑1
                                         TTTCACCAAATGGCAAAGCCCAGCATATCAAAGGC  >  1:17142996/1‑35
                                         TTTCACCAAATGGCAAAGCCCAGCATATCAAAGGC  >  1:16356404/1‑35
                                         TTTCACCAAATGGCAAAGCCCAGCATATCAAAGGC  >  1:9653931/1‑35
                                         TTTCACCAAATGGCAAAGCACAGCATATCAAAGGC  <  1:4905587/35‑1
                                                                            
CGGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1398178‑1398219
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccattTTCACCAAATGGCAAAGCCCAGCATATCAAAGGC  <  REL606/1743481‑1743448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.