New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3302668 = | 53 (0.520) | 10 (0.120) | 6/38 | NT | 13.9% | intergenic (‑281/‑99) | nanR/dcuD | transcriptional regulator NanR/predicted transporter |
? | REL606 | 4085857 = | 82 (1.010) | intergenic (+55/‑94) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F |
Only 100 of 106 total aligned reads displayed.
ATGAAAAATCACCTCATCCACAATTAAAAACACGACATCCGCACCATAAATAGCCTTGCAAAAAATATA > REL606/3302634‑3302702 | aTGAAAAATCACCTCATCCACAATTAAAAACACGa > 1:16800439/1‑35 (MQ=255) tGAAAAATCACCTCATCCACAATTAAAAACACGAc > 1:4148741/1‑35 (MQ=255) tGAAAAATCACCTCATCCACAATTAAAAACACGAc > 1:3298827/1‑35 (MQ=255) gAAAAATCACCTCATCCACAATTAAAAACACGACa > 1:6689251/1‑35 (MQ=255) cagcaggcaaattgaggataaaaaaaacccccaca < 1:4533417‑M1/3‑1 (MQ=255) cagcaggcaaattgaggataaaaaaaacccccaca < 1:13485924‑M1/3‑1 (MQ=255) cagcaggcaaattgaggataaaaaaaacccccaca < 1:2950009‑M1/3‑1 (MQ=255) cagcaggcaaattgaggataaaaaaaacccccaca < 1:3869425‑M1/3‑1 (MQ=255) agcaggcaaattgaggataaaaaaaacccccACAt < 1:1324511‑M1/4‑1 (MQ=255) agcaggcaaattgaggataaaaaaaacccccACAt < 1:12547096‑M1/4‑1 (MQ=255) agcaggcaaattgaggataaaaaaaacccccACAt > 1:16199613‑M1/32‑35 (MQ=255) agcaggcaaattgaggataaaaaaaacccccACAt > 1:16222793‑M1/32‑35 (MQ=255) agcaggcaaattgaggataaaaaaaacccccACAt > 1:17105610‑M1/32‑35 (MQ=255) agcaggcaaattgaggataaaaaaaacccccACAt > 1:17996687‑M1/32‑35 (MQ=255) aaaaaTCACCTCATCCACAATTAAAAACACTACAt > 1:18896819/1‑35 (MQ=255) aaaaaTCACCTCATCCACAATTAAAAACACGACAt > 1:5034207/1‑35 (MQ=255) gcaggcaaattgaggataaaaaaaacccccACATc < 1:6947271‑M1/5‑1 (MQ=255) gcaggcaaattgaggataaaaaaaacccccACATc < 1:3415638‑M1/5‑1 (MQ=255) gcaggcaaattgaggataaaaaaaacccccACATc < 1:16715921‑M1/5‑1 (MQ=255) gcaggcaaattgaggataaaaaaaacccccACATc < 1:19061586‑M1/5‑1 (MQ=255) gcaggcaaattgaggataaaaaaaacccccACATc < 1:5767242‑M1/5‑1 (MQ=255) aaaaTCCCCTCATCCACAATTAAAAACACGACATc < 1:10008626/35‑1 (MQ=255) aaaaTCACCTCATCCACAATTAAAAACACGACATc > 1:19207394/1‑35 (MQ=255) aaaaTCACCTCATCCACAATTAAAAACACGACATc > 1:8305820/1‑35 (MQ=255) aaaaTCACCTCATCCACAATTAAAAACACGACATc < 1:12063405/35‑1 (MQ=255) aaaaTCACCTCATCCACAATTAAAAACACGACATc > 1:6645457/1‑35 (MQ=255) aaaTCCCCTCATCCACAATTAAAAACACGACATcc < 1:10948265/35‑1 (MQ=255) aaaTCACCTCATCCACAATTAAAAACACGACATcc > 1:9073169/1‑35 (MQ=255) aaTCACCTCATCCACAATTAAAAACACGACATCCg > 1:18443864/1‑35 (MQ=255) aaTCACCTCATCCACAATTAAAAACACGACATCCg > 1:12815515/1‑35 (MQ=255) aaTCACCTCATCCACAATTAAAAACACGACATCCg > 1:13935792/1‑35 (MQ=255) aTCACCTCATCCACAATTAAAAACACGACATCCGc > 1:4343870/1‑35 (MQ=255) tCACATCATCCACAATTAAAAACACGACATACGCa < 1:15449786/35‑1 (MQ=37) cACCTCATCCACAATTAAAAACACGACATCCGCAc > 1:15921188/1‑35 (MQ=255) cACCTCATCCACAATTAAAAACACGACATCCGCAc > 1:15445023/1‑35 (MQ=255) aCCTCATCCACAATTAAAAACACGACATCCGCAcc > 1:812258/1‑35 (MQ=255) aCCTCATCCACAATTAAAAACACGACATCCGCAcc > 1:6213880/1‑35 (MQ=255) ccTCATCCACAATTAAAAACACGTCATCCGCACCa < 1:5997292/35‑1 (MQ=255) cTCATCCACAATTAAAAACACGACATCCGCACCAt > 1:734395/1‑35 (MQ=255) cTCATCCACAATTAAAAACACGACATCCGCACCAt > 1:31264/1‑35 (MQ=255) tCATCCACAATTAAAAACACGACATCCGCACCATa > 1:11574053/1‑35 (MQ=255) tCATCCACAATTAAAAACACGACATCCGCACCATa > 1:19304919/1‑35 (MQ=255) tCATCCACAATTAAAAACACGACATCCGCACCATa > 1:9371613/1‑35 (MQ=255) cATCCGCAATTAAAAACACGACATCCGCACCATaa > 1:20348998/1‑35 (MQ=255) aTCCACAATTAAAAACACGACATCCGCACCATaaa > 1:8789846/1‑35 (MQ=255) aTCCACAATTAAAAACACGACATCCGCACCATaaa > 1:13871259/1‑35 (MQ=255) ccACAATTAAAAACACGACATCCGCACCATAAATa > 1:14279209/1‑35 (MQ=255) ccACAATTAAAAACACGACATCCGCACCATAAATa > 1:15908997/1‑35 (MQ=255) ccACAATTAAAAACACGACATCCGCACCATAAATa > 1:1713344/1‑35 (MQ=255) cacaATAAAAAACACGACATCCGCACCATAAATAg > 1:9632319/1‑35 (MQ=255) cacaAAAAAAAACCCCCCATCCGCACCATAAATAg < 1:1078977/35‑1 (MQ=16) acaATTAAAAACACGACATCCGCACCATAAATAGc > 1:6069082/1‑35 (MQ=255) acaATTAAAAACACGACATCCGCACCATAAATAGc > 1:14146675/1‑35 (MQ=255) acaATTAAAAACACGACATCCGCACCATAAATAGc > 1:18682796/1‑35 (MQ=255) acaATTAAAAACACGACATCCGCACCATAAATAGc > 1:15030003/1‑35 (MQ=255) acaATTAAAAACACGACATCCGCACCATAAATAGc > 1:6893485/1‑35 (MQ=255) caATTAAAAACACGACATCCGCACCATAAATAGcc > 1:9154686/1‑35 (MQ=255) aaaaaaaaacccccCCATCCGCACCATAAATAGcc > 1:5677434‑M1/15‑35 (MQ=255) aaaaaaaacccccCCATCCGCACCATAAATAGCCt > 1:2737138‑M1/14‑35 (MQ=255) aaaaaaaacccccCCATCCGCACCATAAATAGCCt > 1:11547924‑M1/14‑35 (MQ=255) aTTAAAAACACGACATCCGCACCATAAATAGCCtt > 1:2284558/1‑35 (MQ=255) aTTAAAAACACGACATCCGCACCATAAATAGCCtt > 1:17415395/1‑35 (MQ=255) ttAAAAACACGACATCCGCACCATAAATAGCCTTg > 1:18947040/1‑35 (MQ=255) aaaaaacccccCCATCCGCACCATAAATAGCCTTg > 1:5210829‑M1/12‑35 (MQ=255) aaaaaacccccCCATCCGCACCATAAATAGCCTTg > 1:20613145‑M1/12‑35 (MQ=255) aaaaaacccccCCATCCGCACCATAAATAGCCTTg > 1:13132634‑M1/12‑35 (MQ=255) tAAAAACACGACATCCGCACCATAAATAGCCTTGc > 1:10992957/1‑35 (MQ=255) tAAAAACACGACATCCGCACCATAAATAGCCTTGc > 1:12873292/1‑35 (MQ=255) aaaaaCACGACATCCGCACCATAAATAGCCTTGCa > 1:10208254/1‑35 (MQ=255) aaaaaCACGACATCCGCACCATAAATAGCCTTGCa > 1:2437794/1‑35 (MQ=255) aaaaaCACGACATCCGCACCATAAATAGCCTTGCa > 1:4345308/1‑35 (MQ=255) aaacccccCCATCCGCACCATAAATAGCCTTGCaa > 1:3771449‑M1/9‑35 (MQ=255) aaaaCACGACATCCGCACCATAAATAGCCTTGCaa > 1:9358799/1‑35 (MQ=255) aacccccCCATCCGCACCATAAATAGCCTTGCaaa > 1:2259307‑M1/8‑35 (MQ=255) aaaCACGACATCCGCACCATAAATAGCCTTGCaaa > 1:13549796/1‑35 (MQ=255) aaaCACGACATCCGCACCATAAATAGCCTTGCaaa > 1:15687821/1‑35 (MQ=255) aaaCACGACATCCGCACCATAAATAGCCTTGCaaa > 1:2857288/1‑35 (MQ=255) acccccCCATCCGCACCATAAATAGCCTTGCaaaa > 1:5708165‑M1/7‑35 (MQ=255) aaCACGACATCCGCACCATAAATAGCCTTGCaaaa > 1:12531523/1‑35 (MQ=255) aaCACGACATCCGCACCATAAATAGCCTTGCaaaa > 1:1190520/1‑35 (MQ=255) aaCACGACATCCGCACCATAAATAGCCTTGCaaaa > 1:7727696/1‑35 (MQ=255) aaCACGACATCCGCACCATAAATAGCCTTGCaaaa > 1:18693800/1‑35 (MQ=255) aaCACGACATCCGCACCATAAATAGCCTTGCaaaa > 1:2558627/1‑35 (MQ=255) aaCACGACATCCGCACCATAAATAGCCTTGCaaaa > 1:3725816/1‑35 (MQ=255) cccccCCATCCGCACCATAAATAGCCTTGCaaaaa > 1:2863045‑M1/6‑35 (MQ=255) cccccCCATCCGCACCATAAATAGCCTTGCaaaaa > 1:18528155‑M1/6‑35 (MQ=255) acacGACATCCGCACCATAAATAGCCTTGCaaaaa > 1:3365059/1‑35 (MQ=255) ccccCCATCCGCACCATAAATAGCCTTGCaaaaaa > 1:13559921‑M1/5‑35 (MQ=255) cacGACATCCGCACCATAAATAGCCTTGCaaaaaa > 1:3301231/1‑35 (MQ=255) cacGACATCCGCACCATAAATAGCCTTGCaaaaaa > 1:10383504/1‑35 (MQ=255) cacGACATCCGCACCATAAATAGCCTTGCaaaaaa > 1:18945145/1‑35 (MQ=255) cacGACATCCGCACCATAAATAGCCTTGCaaaaaa > 1:2701931/1‑35 (MQ=255) acGACATCCGCACCATAAATAGCCTTGCAAAAAat > 1:18659274/1‑35 (MQ=255) acGACATCCGCACCATAAATAGCCTTGCAAAAAat > 1:3161321/1‑35 (MQ=255) acGACATCCGCACCATAAATAGCCTTGCAAAAAat > 1:3102354/1‑35 (MQ=255) cGACATCCGCACCATAAATAGCCTTGCAAAAAata > 1:687592/1‑35 (MQ=255) cGACATCCGCACCATAAATAGCCTTGCAAAAAata > 1:18150901/1‑35 (MQ=255) gACATCCGCACCATAAATAGCCTTGCAAAAAatat > 1:10232779/1‑35 (MQ=255) gACATCCGCACCATAAATAGCCTTGCAAAAAatat > 1:3675853/1‑35 (MQ=255) ACATCCGCACCATAAATAGCCTTGCAAAAAAtata < 1:7115686‑M1/35‑1 (MQ=255) | ATGAAAAATCACCTCATCCACAATTAAAAACACGACATCCGCACCATAAATAGCCTTGCAAAAAATATA > REL606/3302634‑3302702 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |