New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 368616056 (0.540)23 (0.230) 5/46 NT 30.0% coding (402/741 nt) yiaT hypothetical protein
?REL606 = 4467594 NA (NA)intergenic (‑281/+73) holC/pepA DNA polymerase III subunit chi/leucyl aminopeptidase

Only 100 of 144 total aligned reads displayed.

TGATGCGACGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTT  >  REL606/4467563‑4467628
                               |                                  
tGATGCGACGCTTGCGCGTCTTATCAGGCCTACGa                                 >  1:4112673/1‑35 (MQ=32)
tGATGCGACGCTTGCGCGTCTTATCAGGCCTACGa                                 <  1:11133823/35‑1 (MQ=32)
tGATGCGACGCTTGCGCGTCTTATCAGGCCTACGa                                 >  1:2228030/1‑35 (MQ=32)
 gATGCGACGCTTGCGCGTCTTATCAGGCCTACGAg                                <  1:8644133/35‑1 (MQ=35)
 gATGCGACGCTTGCGCGTCTTATCAGGCCTACGAg                                <  1:11613309/35‑1 (MQ=35)
 gATGCGACGCTTGCGCGTCTTATCAGGCCTACGAg                                >  1:2408081/1‑35 (MQ=35)
  aTGCGACGCTTGCGCGTCTTATCAGGCCTACGAGt                               <  1:10254893/35‑1 (MQ=38)
  aTGCGACGCTTGCGCGTCTTATCAGGCCTACGAGt                               >  1:6289428/1‑35 (MQ=38)
   tGCGACGCTTGCGCGTCTTATCAGGCCTACGAGtt                              <  1:6463066/35‑1 (MQ=40)
   tGCGACGCTTGCGCGTCTTATCAGGCCTACGAGtt                              <  1:11234767/35‑1 (MQ=40)
   tGCGACGCTTGCGCGTCTTATCAGGCCTACGAGtt                              >  1:16794288/1‑35 (MQ=40)
   tGCGACGCTTGCGCGTCTTATCAGGCCTACGAGtt                              <  1:397642/35‑1 (MQ=40)
    gCGACGCTTGCGCGTCTTATCAGGCCTACGAGTTc                             >  1:4989060/1‑35 (MQ=255)
    gCGACGCTTGCGCGTCTTATCAGGCCTACGAGTTc                             <  1:12639338/35‑1 (MQ=255)
     cGACGCTTGCGCGTCTTATCAGGCCTACGAGTTCa                            <  1:16600642/35‑1 (MQ=255)
     cGACGCTTGCGCGTCTTATCAGGCCTACGAGTTCa                            >  1:723112/1‑35 (MQ=255)
       aCGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGt                          >  1:17216260/1‑35 (MQ=255)
       aCGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGt                          <  1:6758616/35‑1 (MQ=255)
       aCGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGt                          <  1:20162270/35‑1 (MQ=255)
       aCGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGt                          <  1:10891257/35‑1 (MQ=255)
       aCGCTTGCGCGTCTTATCAGGCCTACAAGATcgga                          >  1:16316910/1‑32 (MQ=1)
        cGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTg                         <  1:599766/35‑1 (MQ=255)
        cGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTg                         >  1:8847434/1‑35 (MQ=255)
         gcctGCGCGTCTTATCAGGCCTACGAGTTCAGTGc                        >  1:5400494/4‑35 (MQ=255)
         gCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGc                        <  1:15699232/35‑1 (MQ=255)
         gCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGc                        >  1:5926457/1‑35 (MQ=255)
         gCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGc                        >  1:14556584/1‑35 (MQ=255)
         gCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGc                        >  1:12799929/1‑35 (MQ=255)
         gCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGc                        >  1:7980171/1‑35 (MQ=255)
         gCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGc                        >  1:8747811/1‑35 (MQ=255)
         gCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGc                        <  1:2608890/35‑1 (MQ=255)
         gCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGc                        >  1:3732829/1‑35 (MQ=255)
          cTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCt                       <  1:4858954/35‑1 (MQ=255)
          cTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCt                       <  1:9836533/35‑1 (MQ=255)
          cTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCt                       >  1:906295/1‑35 (MQ=255)
          cTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCt                       <  1:13100810/35‑1 (MQ=255)
           ttGCGCGTCTTATCAGGCCTACGAGTTCAGTGCtg                      <  1:3623379/35‑1 (MQ=255)
           ttGCGCGTCTTATCAGGCCTACGAGTTCAGTGCtg                      <  1:17604516/35‑1 (MQ=255)
           ttGCGCGTCTTATCAGGCCTACGAGTTCAGTGCtg                      <  1:18924979/35‑1 (MQ=255)
            tGCGCGTCTTATCAGGCCTACGAGTTCAGTGCtgt                     >  1:10258595/1‑35 (MQ=255)
            tGCGCGTCTTATCAGGCCTACGAGTTCAGTGCtgt                     <  1:12367300/35‑1 (MQ=255)
            tGCGCGTCTTATCAGGCCTACGAGTTCAGTGCtgt                     <  1:16268066/35‑1 (MQ=255)
            tGCGCGTCTTATCAGGCCTACGAGTTCAGTGCtgt                     <  1:5590875/35‑1 (MQ=255)
            tGCGCGTCTTATCAGGCCTACGAGTTCAGTGCtgt                     <  1:14246825/35‑1 (MQ=255)
            tGCGCGTCTTATCAGGCCTACGAGTTCAGTGCtgt                     <  1:18111737/35‑1 (MQ=255)
            tGCGCCTCTTATCAGGCCTACGAGTTCAGTGCtgt                     <  1:3979784/35‑1 (MQ=255)
             gcgcGTCTTATCAGGCCTACGAGTTCAGTGCtgtg                    <  1:13443799/35‑1 (MQ=40)
             gcgcGTCTTATCAGGCCTACGAGTTCAGTGCtgtg                    <  1:10811788/35‑1 (MQ=40)
              cgcgTCTTATCAGGCCTACGAGTTCAGTGCTgtgt                   <  1:1290317/35‑1 (MQ=38)
              cgcgTCTTATCAGGCCTACGAGTTCAGTGCTgtgt                   <  1:6785823/35‑1 (MQ=38)
               gcgTCTTATCAGGCCTACGAGTTCAGTGCTGTGTa                  <  1:5201104/35‑1 (MQ=38)
                cgTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAg                 <  1:19848381/35‑1 (MQ=38)
                cgTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAg                 >  1:19254374/1‑35 (MQ=38)
                cgTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAg                 >  1:13284967/1‑35 (MQ=38)
                cgTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAg                 >  1:14405514/1‑35 (MQ=38)
                cgTCATATCAGGCCTACGAGTTCAGTGCTGTTTAg                 <  1:3179982/35‑1 (MQ=11)
                agTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAg                 <  1:4745187/34‑1 (MQ=25)
                 gTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAgg                <  1:5889274/35‑1 (MQ=38)
                 gTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAgg                >  1:16214977/1‑35 (MQ=38)
                 gTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAgg                >  1:12465830/1‑35 (MQ=38)
                 gTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAgg                <  1:10059431/35‑1 (MQ=38)
                  tCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGt               >  1:10759091/1‑35 (MQ=38)
                   cTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTc              <  1:2133263/35‑1 (MQ=38)
                   cTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTc              <  1:20508466/35‑1 (MQ=38)
                   cTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTc              >  1:8426430/1‑35 (MQ=38)
                   cTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTc              >  1:4685222/1‑35 (MQ=38)
                   cTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTc              <  1:6646491/35‑1 (MQ=38)
                    ttATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCg             >  1:8529048/1‑35 (MQ=38)
                    ttATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCg             <  1:9651868/35‑1 (MQ=38)
                    ttATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCg             >  1:18508880/1‑35 (MQ=38)
                     tATCAGGCCTACGAGTTCAGTGCTGTGTAGGTctg            >  1:5108964/1‑33 (MQ=255)
                     tATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCgg            <  1:20581388/35‑1 (MQ=38)
                      aTCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGa           <  1:4602929/35‑1 (MQ=255)
                       tCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGAt          >  1:6966488/1‑35 (MQ=38)
                       tCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGAt          <  1:6786066/35‑1 (MQ=38)
                       tCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGAt          <  1:14863004/35‑1 (MQ=38)
                       tCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGAt          <  1:3569699/35‑1 (MQ=38)
                       tCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGAt          <  1:19082637/35‑1 (MQ=38)
                       tCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGAt          >  1:1688347/1‑35 (MQ=38)
                       tCAGGCCTACGAGTTCAGTGCTGTGTACGGCgggt          >  1:14723686/1‑33 (MQ=11)
                        cAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATa         <  1:1821554/35‑1 (MQ=38)
                        cAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATa         >  1:798471/1‑35 (MQ=38)
                         aGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATaa        >  1:4410138/1‑35 (MQ=38)
                          ggCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAg       >  1:8365553/1‑35 (MQ=38)
                           gCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAgg      <  1:16142886/35‑1 (MQ=38)
                           gCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAgg      <  1:8615110/35‑1 (MQ=38)
                            ccTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGc     <  1:17119221/35‑1 (MQ=38)
                            ccTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGc     >  1:6376258/1‑35 (MQ=38)
                            ccTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGc     <  1:93188/35‑1 (MQ=38)
                            ccTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGc     >  1:15375486/1‑35 (MQ=38)
                             cTACGAGTTCAGTGCTGTGTATGTCGGGAAAGGCg    >  1:12067542/1‑35 (MQ=14)
                              tACGAGTTCAGTGCTGTGTAGGTCGGGTAAGGCGt   >  1:3434056/1‑35 (MQ=255)
                              tACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGt   <  1:18970380/35‑1 (MQ=38)
                              tACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGt   >  1:11863392/1‑35 (MQ=38)
                              tACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGt   <  1:11841019/35‑1 (MQ=38)
                               aCGAGTTCAGTGCTGTGTAGGTCGGATAAGGCggt  >  1:2819526/1‑33 (MQ=255)
                               aCGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGtt  <  1:18871750/35‑1 (MQ=38)
                               aCGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGtt  <  1:14089404/35‑1 (MQ=38)
                               aCGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGtt  >  1:11499201/1‑35 (MQ=38)
                               aCGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGtt  <  1:3587503/35‑1 (MQ=38)
                               |                                  
TGATGCGACGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTT  >  REL606/4467563‑4467628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.