New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 246042115 (1.120)8 (0.080) 5/44 NT 10.0% coding (1833/2445 nt) fadE acyl‑CoA dehydrogenase
?REL606 503801 = 39 (0.410)coding (587/927 nt) ybbS DNA‑binding transcriptional activator of the allD operon

Only 100 of 209 total aligned reads displayed.

CAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCCAGACGGGCCGAGATGCGCTCGCGACGTTTCAGGC  >  REL606/246008‑246076
                                  |                                  
cAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCC                                    <  1:18621455‑M1/35‑1 (MQ=255)
cAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCC                                    <  1:7596714‑M1/35‑1 (MQ=255)
 agagGCGAGGTAGAGCTGGCTTAAAATATCCCCCa                                   <  1:18784767/35‑1 (MQ=255)
 agagGCGAGGTAGAGCTGGCTTAAAATATCCCCCa                                   <  1:13216547/35‑1 (MQ=255)
  gatgCGAGGTAGAGCTGGCTTAAAATATCCCCCAg                                  >  1:5742664/4‑35 (MQ=255)
  gagGCGAGGTAGAGCTGGCTTAAAATATCCCCCcg                                  >  1:20565719‑M1/1‑33 (MQ=255)
  gagGCGAGGTAGAGCTGGCTTAAAATATCCCCCAg                                  >  1:13143158/1‑35 (MQ=255)
  gagGCGAGGTAGAGCTGGCTTAAAATATCCCCCAg                                  <  1:18384365/35‑1 (MQ=255)
  gagGCGAGGTAGAGCTGGCTTAAAATATCCCCCAg                                  <  1:7883266/35‑1 (MQ=255)
  gagGCGAGGTAGAGCTGGCTTAAAATATCCCCCAg                                  >  1:10016503/1‑35 (MQ=255)
   agGCGAGGTAGAGCTGGCTTAAAATATCCCCCAGa                                 <  1:18323131/35‑1 (MQ=255)
   agGCGAGGTAGAGCTGGCTTAAAATATCCCCCAGa                                 <  1:3290426/35‑1 (MQ=255)
   agGCGAGGTAGAGCTGGCTTAAAATATCCCCCAGa                                 <  1:12463010/35‑1 (MQ=255)
    ggCGAGGTAGAGCTTGCTTAAAATATCCCCCAGAc                                >  1:5506216/1‑35 (MQ=255)
    ggCGAGGTAGAGCTGGCTTAAAATATCCCCCAGAc                                <  1:4596411/35‑1 (MQ=255)
      cGAGGTAGAGCTGGCTTAAAATATCCCCCAGACgg                              >  1:8494746/1‑35 (MQ=255)
      cGAGGTAGAGCTGGCTTAAAATATCCCCCAGACgg                              <  1:20351843/35‑1 (MQ=255)
       gAGGTAGAGCTGGCTTAAAATATCCCCCAGACggg                             >  1:422285/1‑35 (MQ=255)
        aGGTAGAGCTGGCTTAAAATATCCCCCAGACGGGc                            >  1:15965563/1‑35 (MQ=255)
        aGGTAGAGCTGGCTTAAAATATCCCCCAGACGGGc                            >  1:14068574/1‑35 (MQ=255)
        aGGTAGAGCTGGCTTAAAATATCCCCCAGACGGGc                            >  1:14445679/1‑35 (MQ=255)
        aGGTAGAGCTGGCTTAAAATATCCCCCAGACGGGc                            <  1:3547571/35‑1 (MQ=255)
        aGGTAGAGCTGGCTTAAAATATCCCCCAGACGGGc                            >  1:7092680/1‑35 (MQ=255)
         ggTAGAGCTGGCTTAAAATATCCCCCAGACGGGcc                           <  1:19537941/35‑1 (MQ=255)
          gTAGAGCTGGCTTAAAATATCCCCCAGACGGGCCg                          <  1:11785396/35‑1 (MQ=255)
          gTAGAGCTGGCTTAAAATATCCCCCAGACGGGCCg                          <  1:5215630/35‑1 (MQ=255)
          gTAGAGCTGGCTTAAAATATCCCCCAGACGGGCCg                          >  1:10295817/1‑35 (MQ=255)
           tAGAGCTGGCTTAAAATATCCCCCAGACGGGCCga                         >  1:3216683/1‑35 (MQ=255)
           tAGAGCTGGCTTAAAATATCCCCCAGACGGGCCga                         >  1:17680971/1‑35 (MQ=255)
            agagCTGGCTTAAAATATCCCCAAGACGGGCCgag                        <  1:19647052/35‑1 (MQ=255)
              agCTGGCTTAAAATATCCCCCAGACGGGCCGAGAt                      >  1:6061965/1‑35 (MQ=255)
              agCTGGCTTAAAATATCCCCCAGACGGGCCGAGAt                      >  1:9770301/1‑35 (MQ=255)
              agCTGGCTTAAAATATCCCCCAGACGGGCCGAGAt                      >  1:14202099/1‑35 (MQ=255)
              agCTGGCTTAAAATATCCCCCAGACGGGCCGAGAt                      <  1:13861730/35‑1 (MQ=255)
               gCTGGCTTAAAATATCCCCCAGACGGGCCGAGATg                     >  1:12850864/1‑35 (MQ=255)
               gCTGGCTTAAAATATCCCCCAGACGGGCCGAGATg                     >  1:11148659/1‑35 (MQ=255)
                cTGGCTTAAAATATCCCCCAGACGGGCCGAGATgc                    >  1:1349343/1‑35 (MQ=255)
                cTGGCTTAAAATATCCCCCAGACGGGCCGAGATgc                    >  1:16590647/1‑35 (MQ=255)
                cTGGCTTAAAATATCCCCCAGACGGGCCGAGATgc                    <  1:5143589/35‑1 (MQ=255)
                cTGGCTTAAAATATCCCCCAGACGGGCCGAGATgc                    >  1:7695836/1‑35 (MQ=255)
                 tGGCTTAAAATATCCCCCAGACGGGCCGAGATgcg                   >  1:11574393/1‑35 (MQ=255)
                 tGGCTTAAAATATCCCCCAGACGGGCCGAGATgcg                   >  1:12064879/1‑35 (MQ=255)
                  ggCTTAAAATATCCCCCAGACGGGCCGAGATgcgc                  >  1:1531664/1‑35 (MQ=255)
                  ggCTTAAAATATCCCCCAGACGGGCCGAGATgcgc                  >  1:15425989/1‑35 (MQ=255)
                  ggCTTAAAATATCCCCCAGACGGGCCGAGATgcgc                  >  1:17217215/1‑35 (MQ=255)
                  ggCTTAAAATATCCCCCAGACGGGCCGAGATgcgc                  >  1:18565320/1‑35 (MQ=255)
                    cTTAAAATATCCCCCAGACGGGCCGAGATGCGCTc                <  1:6277284/35‑1 (MQ=255)
                    cTTAAAATATCCCCCAGACGGGCCGAGATGCGCTc                <  1:10726410/35‑1 (MQ=255)
                    cTTAAAATATCCCCCAGACGGGCCGAGATGCGCTc                <  1:10408152/35‑1 (MQ=255)
                    cTTAAAATATCCCCCAGACGGGCCGAGATGCGCTc                <  1:14290297/35‑1 (MQ=255)
                     ttAAAATATCCCCCAGACGGGCCTAGATGCGCTcg               >  1:8093566/1‑35 (MQ=255)
                     ttAAAATATCCCCCAGACGGGCCGAGATGCGCTcg               >  1:10084630/1‑35 (MQ=255)
                     ttAAAATATCCCCCAGACGGGCCGAGATGCGCTcg               <  1:13397700/35‑1 (MQ=255)
                     ttAAAATATCCCCCAGACGGGCCGAGATGCGCTcg               <  1:14043372/35‑1 (MQ=255)
                      tAAAATATCCCCCAGACGGGCCGAGATGCGCTcgc              >  1:10458392/1‑35 (MQ=255)
                      tAAAATATCCCCCAGACGGGCCGAGATGCGCTcgc              >  1:1241671/1‑35 (MQ=255)
                       aaaaTATCCCCCAGACGGGCCGAGATGCGCTcgcg             >  1:16349467/1‑35 (MQ=255)
                       aaaaTATCCCCCAGACGGGCCGAGATGCGCTcgcg             >  1:113990/1‑35 (MQ=255)
                       aaaaTATCCCCCAGACGGGCCGAGATGCGCTcgcg             <  1:11913612/35‑1 (MQ=255)
                       aaaaTATCCCCCAGACGGGCCGAGATGCGCTcgcg             <  1:5870300/35‑1 (MQ=255)
                       aaaaTATCCCCCAGACGGGCCGAGATGCGCTcgcg             >  1:5433784/1‑35 (MQ=255)
                         aaTATCCCCCAGACGGGCCGAGATGCGCTCGCGAc           >  1:14774996/1‑35 (MQ=255)
                         aaTATCCCCCAGACGGGCCGAGATGCGCTCGCGAc           >  1:7524448/1‑35 (MQ=255)
                         aaTATCCCCCAGACGGGCCGAGATGCGCTCGCGAc           <  1:19713307/35‑1 (MQ=255)
                          atatCCCCCAGACGGGCCGAGATGCGCTCGCGACg          >  1:7022055/1‑35 (MQ=255)
                           tatCCCCCgccggaaagcgccgcaactgcgcttct         <  1:5570266‑M1/35‑28 (MQ=255)
                           tatCCCCCgccggaaagcgccgcaactgcgcttct         <  1:20147804‑M1/35‑28 (MQ=255)
                           tatCCCCCAGACGGGCCGAGATGCGCTCGCGACGt         >  1:451063/1‑35 (MQ=255)
                           attccCCCgccggaaagcgccgcaactgcgcttct         <  1:9077650‑M1/33‑28 (MQ=255)
                            atCCCCCgccggaaagcgccgcaactgcgcttctg        <  1:9326961‑M1/35‑29 (MQ=255)
                            atCCCCCAGACGGGCCGAGATGCGCTCGCGACGtt        >  1:8873867/1‑35 (MQ=255)
                             tgacccgccggaaagcgccgcaactgcgcttctgt       <  1:12622066‑M1/32‑30 (MQ=255)
                             tCCCCCgccggaaagcgccgcaactgcgcttctgt       <  1:14956776‑M1/35‑30 (MQ=255)
                             tCCCCCAGACGGGCCGAGATGCGCTCGCGACGttt       <  1:12226062/35‑1 (MQ=255)
                             tCCCCCAGACGGGCCGAGATGCGCTCGCGACGttt       <  1:15505050/35‑1 (MQ=255)
                             gcccccgccggaaagcgccgcaactgcgcttctgt       <  1:19944543‑M1/34‑30 (MQ=255)
                              tccccgccggaaagcgccgcaactgcgcttctgtt      <  1:13312923‑M1/34‑31 (MQ=255)
                              cccccgccggaaagcgccgcaactgcgcttctgtt      <  1:1106775‑M1/35‑31 (MQ=255)
                               gcccgccggaaagcgcagcaactgcgcttctgtta     <  1:14516009‑M1/34‑32 (MQ=255)
                               ccccgccggaaagcgccgcaactgcgcttctgtta     <  1:14662960‑M1/35‑32 (MQ=255)
                               ccccgccggaaagcgccgcaactgcgcttctgtta     <  1:8623188‑M1/35‑32 (MQ=255)
                               ccccAGACGGGCCGAGATGCGCTCGCGACGTTTCa     <  1:17334198/35‑1 (MQ=255)
                               ccccAGACGGGCCGAGATGCGCTCGCGACGTTTCa     <  1:3170153/35‑1 (MQ=255)
                               ccccAGACGGGCCGAGATGCGCTCGCGACGTTTCa     <  1:19745755/35‑1 (MQ=255)
                               ccccAGACGGGCCGAGATGCGCTCGCGACGTTTCa     >  1:1926753/1‑35 (MQ=255)
                               ccccAGACGGGCCGAGATGCGCTCGCGACGTTTCa     >  1:19121650/1‑35 (MQ=255)
                                cccgccggaaagcgccgcaactgcgcttctgttag    <  1:19334845‑M1/35‑33 (MQ=255)
                                cccAGACGGGCCGAGATGCGCTCGCGACGTTTCAg    <  1:14984327/35‑1 (MQ=255)
                                cccAGACGGGCCGAGATGCGCTCGCGACGTTTCAg    >  1:6791102/1‑35 (MQ=255)
                                cccAGACGGGCCGAGATGCGCTCGCGACGTTTCAg    <  1:4858154/35‑1 (MQ=255)
                                cccAGACGGGCCGAGATGCGCTCGCGACGTTTCAg    <  1:17911992/35‑1 (MQ=255)
                                cccAGACGGGCCGAGATGCGCTCGCGACGTTTCAg    <  1:18345761/35‑1 (MQ=255)
                                 ccgccggaaagcgccgcaactgcgcttctgttagc   >  1:11645763‑M1/1‑2 (MQ=255)
                                  cgccggaaagcgccgcaactgcgcttctgttagcg  <  1:12753859‑M1/35‑35 (MQ=255)
                                  cAGGCGGGCCGAGATGCGCTCGCGACGTTTCAGGc  <  1:15252865/35‑1 (MQ=255)
                                  cAGACGGGCCGAGATGCGCTCGCGACGTTTCAGGc  <  1:10529818/35‑1 (MQ=255)
                                  cAGACGGGCCGAGATGCGCTCGCGACGTTTCAGGc  <  1:11311353/35‑1 (MQ=255)
                                  cAGACGGGCCGAGATGCGCTCGCGACGTTTCAGGc  <  1:11723055/35‑1 (MQ=255)
                                  cAGACGGGCCGAGATGCGCTCGCGACGTTTCAGGc  <  1:17549389/35‑1 (MQ=255)
                                  cAGACGGGCCGAGATGCGCTCGCGACGTTTCAGGc  <  1:18231205/35‑1 (MQ=255)
                                  |                                  
CAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCCAGACGGGCCGAGATGCGCTCGCGACGTTTCAGGC  >  REL606/246008‑246076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.