New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1255973 = | 72 (0.700) | 12 (0.140) | 4/40 | NT | 19.0% | coding (130/2868 nt) | ycgV | predicted adhesin |
? | REL606 | = 3223859 | 42 (0.490) | coding (537/696 nt) | yraI | predicted periplasmic pilin chaperone |
ACCCAACTGAATATTACGTCGTATTTGCCGGATTGGCAGTCGATAAAATCGATCTCACAAGCAAAATT > REL606/3223825‑3223892 | gcccAACTGAATATTACGTCGTATTTGCCGGATTg < 1:4839643/34‑1 (MQ=255) aCCCAACTGAATATTACGTCGTATTTGCCGGATTg > 1:7327935/1‑35 (MQ=255) aCCCAACTGAATATTACGTCGTATTTGCCGGATTg < 1:14230321/35‑1 (MQ=255) cccAACTGAATATTACGTCGTATTTGCCGGATTGg < 1:17789208‑M2/35‑2 (MQ=255) cccAACTGAATATTACGTCGTATTTGCCGGATTGg < 1:18700468‑M2/35‑2 (MQ=255) cccAACTGAATATTACGTCGTATTTGCCGGATTGg > 1:1324206‑M2/1‑34 (MQ=255) cccAACTGAATATTACGTCGTATTTGCCGGATTGg > 1:13410612‑M2/1‑34 (MQ=255) ccAACTGAATATTACGTCGTATTTGCCGGATTGgc < 1:16487033‑M2/35‑3 (MQ=255) acaACTGAATATTACGTCGTATTTGCCGGATTGgc > 1:1428666‑M2/2‑33 (MQ=255) aaCTGAATATTACGTCGTATTTGCCGGATTGgcag > 1:189368‑M2/1‑31 (MQ=255) aaCTGAATATTACGTCGTATTTGCCGGATTGgcag > 1:14751169‑M2/1‑31 (MQ=255) aCTGAATATTACGTCGTATTTGCCGGATTGGCAGt < 1:7008532/35‑1 (MQ=255) aCTGAATATTACGTCGTATTTGCCGGATTGGCAGt < 1:11031648/35‑1 (MQ=255) cTGAATATTACGTCGTATTTGCCGGATTGgcaggg < 1:4100215‑M2/35‑7 (MQ=255) cTGAATATTACGTCGTATTTGCCGGATTGgcaggg < 1:9596495‑M2/35‑7 (MQ=255) tGAATATTACGTCGTATTTGCCGGGTTGGCAGTCg < 1:13640949/35‑1 (MQ=255) tGAATATTACGTCGTATTTGCCGGATTGgcagggg < 1:20539765‑M2/35‑8 (MQ=255) tGAATATTACGTCGTATTTGCCGGATTGGCAGTCg < 1:14133670/35‑1 (MQ=255) tGAATATTACGTCGTATTTGCCGGATTGGCAGTCg < 1:16501593/35‑1 (MQ=255) gAATATTACGTCGTATTTGCCGGATTGgcaggggg < 1:17261712‑M2/35‑9 (MQ=255) gAATATTACGTCGTATTTGCCGGATTGgcaggggg < 1:7830448‑M2/35‑9 (MQ=255) gAATATTACGTCGTATTTGCCGGATTGgcaggggg < 1:4602869‑M2/35‑9 (MQ=255) gAATATTACGTCGTATTTGCCGGATTGgcaggggg < 1:11375488‑M2/35‑9 (MQ=255) gAATATTACGTCGTATTTGCCGGATTGgcaggggg < 1:27625‑M2/35‑9 (MQ=255) gAATATTACGTCGTATTTGCCGGATTGgcaggggg < 1:3485255‑M2/35‑9 (MQ=255) gAATATTACGTCGTATTTGCCGGATTGGCAGTCGa < 1:7725751/35‑1 (MQ=255) aaTATTACGTCGTATTTGCCGGATTGgcagggggg < 1:6567349‑M2/35‑10 (MQ=255) aaTATTACGTCGTATTTGCCGGATTGGCAGTCGAt < 1:16140491/35‑1 (MQ=255) aaTATTACGTCGTATTTGCCGGATTGGCAGTCGAt < 1:10375571/35‑1 (MQ=255) atatTACGTCGTATTTGCCGGATTGgcaggggggg < 1:15299865‑M2/35‑11 (MQ=255) atatTACGTCGTATTTGCCGGATTGgcaggggggg < 1:3945430‑M2/35‑11 (MQ=255) atatTACGTCGTATTTGCCGGATTGgcaggggggg < 1:10400319‑M2/35‑11 (MQ=255) atatTACGTCGTATTTGCCGGATTGGCAGTCGATa < 1:16501002/35‑1 (MQ=255) atatTACGTCGTATTTGCCGGATTGGCAGTCGATa < 1:7856784/35‑1 (MQ=255) tatTACGTCGTATTTGCCGGATTGgcaggggggga < 1:3219985‑M2/35‑12 (MQ=255) tatTACGTCGTATTTGCCGGATTGGCAGTCGATaa < 1:17822723/35‑1 (MQ=255) tatTACGTCGTATTTGCCGGATTGGCAGTCGATaa < 1:18925069/35‑1 (MQ=255) atTACGTCGTATTTGCCGGATTGgcagggggggaa < 1:9875090‑M2/35‑13 (MQ=255) atTACGTCGTATTTGCCGGATTGGCAGTCGATaaa < 1:10477216/35‑1 (MQ=255) ttACGTCGTATTTGCCGGATTGgcagggggggaaa < 1:6505031‑M2/35‑14 (MQ=255) ttACGTCGTATTTGCCGGATTGGCAGTCGATaaaa < 1:2580426/35‑1 (MQ=255) ttACGTCGTATTTGCCGGATTGGCAGTCGATaaaa < 1:8979145/35‑1 (MQ=255) ttACGTAGTATTTGCCGGATTGGCAGTCGATaaaa < 1:13940513/35‑1 (MQ=255) tACGTCGTATTTGCCGGATTGGCAGTCGATAAAAt < 1:2587131/35‑1 (MQ=255) tACGTCGTATTTGCCGGATTGGCAGTCGATAAAAt < 1:18785772/35‑1 (MQ=255) tACGTCGTATTTGCCGGATTGGCAGTCGATAAAAt < 1:16952846/35‑1 (MQ=255) aCGTCGTATTTGCCGGATTGgcagggggggaaaaa < 1:19415412‑M2/35‑16 (MQ=255) aCGTCGTATTTGCCGGATTGgcagggggggaaaaa < 1:5174791‑M2/35‑16 (MQ=255) aCGTCGTATTTGCCGGATTGgcagggggggaaaaa < 1:2173898‑M2/35‑16 (MQ=255) aCGTCGTATTTGCCGGATTGgcagggggggaaaaa < 1:11405117‑M2/35‑16 (MQ=255) aCGTCGTATTTGCCGGATTGgcagggggggaaaaa < 1:16270749‑M2/35‑16 (MQ=255) aCGTCGTATTTGCCGGATTGgcagggggggaaaaa < 1:16706786‑M2/35‑16 (MQ=255) aCGTCGTATTTGCCGGATTGGCAGTCGATAAAATc < 1:14115574/35‑1 (MQ=255) aCGTCGTATTTGCCGGATTGGCAGTCGATAAAATc < 1:17658761/35‑1 (MQ=255) cgtcgtATTTGCCGGATTGGCAGTCGATAAAATCg < 1:14550250/35‑1 (MQ=255) cgtcgtATTTGCCGGATTGGCAGTCGATAAAATCg < 1:14577969/35‑1 (MQ=255) cgtcgtATTTGCCGGATTGGCAGTCGATAAAAACg < 1:7619334/35‑1 (MQ=255) gtcgtATTTGCCGGATTGGCAGTCGATAAAATCGa < 1:15987406/35‑1 (MQ=255) gtcgtATTTGCCGGATTGGCAGTCGATAAAATCGa < 1:19336661/35‑1 (MQ=255) tcgtATTTGCCGGATTGGCAGTCGATAAAATCGAt < 1:18249637/35‑1 (MQ=255) cgtATTTGCCGGATTGGCAGTCGATAAAATCGAtc < 1:8910829/35‑1 (MQ=255) gtATTTGCCGGATTGGCAGTCGATAAAATCGAtct < 1:4485180/35‑1 (MQ=255) tttGCCGGATTGGCAGTCGATAAAATCGATCTcac < 1:14920974/35‑1 (MQ=255) tttGCCGGATTGGCAGTCGATAAAATCGATCTcac < 1:6720511/35‑1 (MQ=255) tttGCCGGATTGGCAGTCGATAAAATCGATCTcac < 1:13569293/35‑1 (MQ=255) ttGCCGGATTGGCAGTCGATAAAATCGATCTcaca < 1:4482145/35‑1 (MQ=255) ttGCCGGATTGGCAGTCGATAAAATCGATCTcaca < 1:20106767/35‑1 (MQ=255) tGCCGGGTTGGCAGTCGATAAAATCGATCTCACaa < 1:7932022/35‑1 (MQ=255) tGCCGGATTGGCAGTCGATAAAATCGATCTCACaa < 1:8281748/35‑1 (MQ=255) tGCCGGATTGGCAGTCGATAAAATCGATCTCACaa < 1:2214731/35‑1 (MQ=255) tGCCGGATTGGCAGTCGATAAAATCGATCTCACaa < 1:3516182/35‑1 (MQ=255) tGCCGGATTGGCAGTCGATAAAATCGATCTCACaa < 1:11012821/35‑1 (MQ=255) gCCGGATTGGCAGTCGATAAAATCGATTTCACAAg < 1:7218758/35‑1 (MQ=255) gCCGGATTGGCAGTCGATAAAATCGATCTCACAAg < 1:8556142/35‑1 (MQ=255) ccGGATTGGCAGTCGATAAAATCGATCTCACAAGc < 1:9879471/35‑1 (MQ=255) ccGGATTGGCAGTCGATAAAATCGATCTCACAAGc < 1:7653488/35‑1 (MQ=255) ccGGATTGGCAGTCGATAAAATCGATCTCACAAGc < 1:16572052/35‑1 (MQ=255) ccGGATTGGCAGTCGATAAAATCGATCTCACAAGc < 1:19545704/35‑1 (MQ=255) cGGATTGGCAGTCGATAAAATCGATCTCACAAGCa < 1:19805563/35‑1 (MQ=255) cGGATTGGCAGTCGATAAAATCGATCTCACAAGCa < 1:2118245/35‑1 (MQ=255) cGGATTGGCAGTCGATAAAATCGATCTCACAAGCa < 1:2943681/35‑1 (MQ=255) ggATTGGCAGTCGATAAAATCGATCTCACAAGCaa < 1:14593722/35‑1 (MQ=255) ggATTGGCAGTCGATAAAATCGATCTCACAAGCaa < 1:13079995/35‑1 (MQ=255) gATTGGCAGTCGATAAAATCGATCTCACAAGCaaa < 1:11500441/35‑1 (MQ=255) aTTGGCAGTCGATAAAATCGATCTCACAAGCaaaa < 1:19099620/35‑1 (MQ=255) tGGCAGTCGATAAAATCGATCTCACAAGCAAAAtt < 1:4302254/35‑1 (MQ=255) tGGCAGTCGATAAAATCGATCTCACAAGCAAAAtt < 1:3084812/35‑1 (MQ=255) | ACCCAACTGAATATTACGTCGTATTTGCCGGATTGGCAGTCGATAAAATCGATCTCACAAGCAAAATT > REL606/3223825‑3223892 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |