New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 66468767 (0.650)34 (0.380) 20/42 NT 39.4% intergenic (‑78/‑48) gltL/insJ‑2 ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein
?REL606 666134 = 46 (0.510)pseudogene (354/387 nt) gltL ATP‑binding protein of glutamate/aspartate transport system; b0652_2

Only 100 of 337 total aligned reads displayed.

GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGG  >  REL606/664653‑664721
                                  |                                  
gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                    <  1:9764151‑M1/35‑1 (MQ=255)
gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                    >  1:13208324‑M1/1‑35 (MQ=255)
gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                    >  1:6377989‑M1/1‑35 (MQ=255)
 cGTGAGCAGAAAGCCCGACACGCTCCAGCAGtttt                                   >  1:13017875/1‑35 (MQ=255)
   tttgtgcgagccatcttccaccctttgaaaTTTGt                                 >  1:12884200‑M1/31‑35 (MQ=255)
    gAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagg                                >  1:13700005‑M1/1‑31 (MQ=255)
     aGCAGAAAGCCCGACACGCTCCAGCAGTTTcaggg                               <  1:11056321‑M1/35‑6 (MQ=255)
     aGCAGAAAGCCCGACACGCTCCAGCAGTTTcaggg                               >  1:11672344‑M1/1‑30 (MQ=255)
     aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAc                               <  1:2327532/35‑1 (MQ=255)
      gtgcgagccatcttccaccctttgaaaTTTGTACt                              >  1:14962005‑M1/28‑35 (MQ=255)
      gCAGAAAGCCCGACACGCTCCAGCAGTTTcagggc                              <  1:1798987‑M1/35‑7 (MQ=255)
      gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACt                              <  1:11155362/35‑1 (MQ=255)
      gCAGAAAGCCCGACACGCTCCAGCAGTTTGTACTg                             >  1:7706441/1‑35 (MQ=38)
       tgcgagccatcttccaccctttgaaaTTTGTACTg                             >  1:3780583‑M1/27‑35 (MQ=255)
       cAGAAAGCCCGACACGCTCCAGCAGTTTcagggct                             >  1:17604265‑M1/1‑28 (MQ=255)
       cAGAAAGCCCGACACGCTCCAGCAGTTTcagggct                             >  1:8904595‑M1/1‑28 (MQ=255)
       cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg                             <  1:8718421/35‑1 (MQ=255)
       cAGAAAGCCCGACACGCTACAGCAGTTTTGTACTg                             <  1:10888713/35‑1 (MQ=255)
        gcgagccatcttccaccctttgaaaTTTGTACTGc                            >  1:15954720‑M1/26‑35 (MQ=255)
        gcgagcaatcttccaccctttgaaaTTTGTACTGc                            >  1:2571125‑M1/26‑35 (MQ=255)
         gAAAGCCCGACACGCTCCAGCAGTTTcagggcttt                           <  1:18055978‑M1/35‑10 (MQ=255)
         cgagccatcttccaccctttgaaaTTTGTACTGCa                           <  1:18544468‑M1/11‑1 (MQ=255)
         cgagccatcttccaccctttgaaaTTTGTACTGCa                           >  1:4085487‑M1/25‑35 (MQ=255)
          gagccatcttccaccctttgaaaTTTGTACTGCAc                          <  1:7460581‑M1/12‑1 (MQ=255)
          gagccatcttccaccctttgaaaTTTGTACTGCAc                          <  1:5767806‑M1/12‑1 (MQ=255)
          gagccatcttccaccctttgaaaTTTGTACTGCAc                          <  1:1745434‑M1/12‑1 (MQ=255)
          aaaGCCCGACACGCTCCAGCAGTTTcagggctttt                          <  1:4141127‑M1/35‑11 (MQ=255)
          aaaGCCCGACACGCTCCAGCAGTTTcagggctttt                          <  1:1033279‑M1/35‑11 (MQ=255)
           aaGCCCGACACGCTCCAGCAGTTTcagggcttttt                         <  1:4286815‑M1/35‑12 (MQ=255)
           aaGCCCGACACGCTCCAGCAGTTTTGTACTGGAcc                         <  1:17837291/35‑1 (MQ=255)
            gccatcttccaccctttgaaaTTTGTACTGCAccc                        >  1:2809934‑M1/22‑35 (MQ=255)
            aGCCCGACACGCTCCAGCAGTTTcagtgctttttc                        >  1:16567051‑M1/1‑23 (MQ=255)
             gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa                       <  1:19682940/35‑1 (MQ=255)
             ccatcttccaccctttgaaaTTTGTACTGCACCCa                       <  1:2962519‑M1/15‑1 (MQ=255)
              catcttccaccctttgaaaTTTGTACTGCACCCAt                      >  1:4054069‑M1/20‑35 (MQ=255)
              catcttccaccctttgaaaTTTGTACTGCACCCAt                      <  1:2166452‑M1/16‑1 (MQ=255)
              catcttccaccctttgaaaTTTGTACTGCACCCAt                      >  1:528645‑M1/20‑35 (MQ=255)
              catcttccaccctttgaaaTTTGTACTGCACCCAt                      <  1:835056‑M1/16‑1 (MQ=255)
               ccGACACGCTCCAGCAGTTTTGTACTGCACCCAtt                     <  1:18748609/35‑1 (MQ=255)
               ccGACACGCTCCAGAAGTTTcagggctttttcacg                     <  1:6107851‑M1/35‑16 (MQ=255)
               cagacACGCTCCAGCAGTTTcagggctttttcacg                     <  1:17729976‑M1/33‑16 (MQ=255)
               atcttccaccctttgaaaTTTGTACTGCACCCAtt                     <  1:4930010‑M1/17‑1 (MQ=255)
               atcttccaccctttgaaaTTTGTACTGCACCCAtt                     <  1:10006959‑M1/17‑1 (MQ=255)
                tcttccaccctttgaaaTTTGTACTGCACCTAttt                    <  1:5584802‑M1/18‑1 (MQ=255)
                cGACACGCTCCAGCAGTTTcagggctttttcacga                    >  1:10531586‑M1/1‑19 (MQ=255)
                 gACACGCTCCAGCAGTTTcagggctttttcacgag                   <  1:12512290‑M1/35‑18 (MQ=255)
                 gACACGCTCCAGCAGTTTcagggctttttcacgag                   <  1:6878917‑M1/35‑18 (MQ=255)
                 cttccaccctttgaaaTTTGTACTGCACCCAtttt                   >  1:14615038‑M1/17‑35 (MQ=255)
                 cttccaccctttgaaaTTTGTACTGCACCCAtttt                   >  1:18131512‑M1/17‑35 (MQ=255)
                 cttccaccctttgaaaTTTGTACTGCACCCAtttt                   <  1:3211092‑M1/19‑1 (MQ=255)
                  ttccaccctttgaaaTTTGTACTGCACCCATTttg                  >  1:6066973‑M1/16‑35 (MQ=255)
                  acacGCTCCAGCAGTTTTGTACTGCACCCATTttg                  >  1:19098451/1‑35 (MQ=255)
                   tccaccctttgaaaTTTGTACTGCACCCATTttgt                 >  1:3422454‑M1/15‑35 (MQ=255)
                   tccaccctttgaaaTTTGTACTGCACCCATTttgt                 <  1:1831097‑M1/21‑1 (MQ=255)
                   cacGCTCCAGCAGTTTcagggctttttcacgagcc                 >  1:17114661‑M1/1‑16 (MQ=255)
                   cacGCTCCAGCAGTTTTGTACTGCACCCATTttgt                 >  1:15109388/1‑35 (MQ=255)
                   cacGCTCCAGCAGTTTGTACTGCACCCATTttgtt                <  1:810392/35‑1 (MQ=21)
                    tcaccctttgaaaTTTGTACTGCACCCATTttgtt                <  1:14284545‑M1/22‑1 (MQ=255)
                    ccaccctttgaaaTTTGTACTGCACCCATTttgtt                >  1:16350940‑M1/14‑35 (MQ=255)
                    ccaccctttgaaaTTTGTACTGCACCCATTttgtt                >  1:3553819‑M1/14‑35 (MQ=255)
                    acGCTCCAGCAGTTTTGTACTGCACCCATTttgtt                >  1:17906652/1‑35 (MQ=255)
                     caccctttgaaaTTTGTACTGCACCCATTttgttg               >  1:16710471‑M1/13‑35 (MQ=255)
                      gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTgg              <  1:4365116/35‑1 (MQ=255)
                      accctttgaaaTTTGTACTGCACCCATTTTGTTgg              <  1:19221906‑M1/24‑1 (MQ=255)
                      accctttgaaaTTTGTACTGCACCCATTTTGTTgg              >  1:14127314‑M1/12‑35 (MQ=255)
                      accctttgaaaTTTGTACTGCACCCATTTTGTTgg              >  1:7998966‑M1/12‑35 (MQ=255)
                       cTCCAGCAGTTTcagggctttttcacgagccggcg             >  1:15729134‑M1/1‑12 (MQ=255)
                        cctttgaaaTTTGTACTGCACCCATTTTGTTGGAc            >  1:7773074‑M1/10‑35 (MQ=255)
                         ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg           >  1:1435591‑M1/9‑35 (MQ=255)
                         ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg           <  1:15326868‑M1/27‑1 (MQ=255)
                         ccAGCAGTTTTGTACTGCACCCATTTTGTTGGatg           >  1:3881426/1‑33 (MQ=255)
                         ccAGCAGTTTTGTACTGCACCCATTTTGTTGGACg           >  1:6589089/1‑35 (MQ=255)
                         ccAGCAGTTTTGTACTGCACCCATTTTGTTGGACg           <  1:13297853/35‑1 (MQ=255)
                          tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa          <  1:19284547‑M1/28‑1 (MQ=255)
                          tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa          <  1:4486104‑M1/28‑1 (MQ=255)
                           ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt         >  1:3003347‑M1/7‑35 (MQ=255)
                           ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt         >  1:10786943‑M1/7‑35 (MQ=255)
                           ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt         >  1:1419831‑M1/7‑35 (MQ=255)
                           ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt         >  1:10083207‑M1/7‑35 (MQ=255)
                           ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt         <  1:6231960‑M1/29‑1 (MQ=255)
                           ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt         <  1:6694722‑M1/29‑1 (MQ=255)
                            tgaaaTTTGTACTGCACCCATTTTGTTGGACGATg        <  1:12650597‑M1/30‑1 (MQ=255)
                            tgaaaTTTGTACTGCACCCATTTTGTTGGACGATg        <  1:9306884‑M1/30‑1 (MQ=255)
                            tgaaaTTTGTACTGCACCCATTTTGTAGGACGATg        <  1:16788433‑M1/30‑1 (MQ=255)
                            gcagTTTTGTACTGCACCCATTTTGTTGGACGATg        >  1:12415538/1‑35 (MQ=255)
                            gcagTTTTGTACTGCACCCATTTTGTTGGACGATg        >  1:15595098/1‑35 (MQ=255)
                             gaaaTTTGTACTGCACCCATTTTGTTGGACGATGa       >  1:7244517‑M1/5‑35 (MQ=255)
                             gaaaTTTGTACTGCACCCATTTTGTTGGACGATGa       <  1:14768487‑M1/31‑1 (MQ=255)
                             cagTTTcagggctttttcacgagccggcgctttat       >  1:7357921‑M1/1‑6 (MQ=255)
                              aaaTTTGTACTGCACCCATTTTGTTGGACGATGaa      >  1:9627609‑M1/4‑35 (MQ=255)
                               gTTTTGTACTGCACCCATTTTGTTGGACGATGaaa     >  1:4682050/1‑35 (MQ=38)
                               caTGTGTACTGCACCCATTTTGTTGGACGATGaaa     <  1:20114320‑M1/33‑1 (MQ=255)
                               aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa     <  1:12305354‑M1/33‑1 (MQ=255)
                               aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa     <  1:14001529‑M1/33‑1 (MQ=255)
                               aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa     <  1:2048123‑M1/33‑1 (MQ=255)
                               aaCTTGTACTGCACCCATTTTGTTGGACGATGaaa     >  1:12069651‑M1/3‑35 (MQ=255)
                                aTTTGTACTGCACCCATTTTGTTGGACGATGAAAt    >  1:19016687‑M1/2‑35 (MQ=255)
                                aTTTGTACTGCACCCATTTTGTTGGACGATGAAAt    <  1:7037569‑M1/34‑1 (MQ=255)
                                aTTTGTACTGCACCCATTTTGTTGGACGATGAAAt    >  1:19526277‑M1/2‑35 (MQ=255)
                                  tcagggctttttcacgagccggcgctttatcgcgt  >  1:11408631‑M1/1‑1 (MQ=255)
                                  |                                  
GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGG  >  REL606/664653‑664721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.