New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1924962 = | 56 (0.540) | 10 (0.100) | 4/48 | NT | 12.3% | intergenic (‑216/‑59) | ruvA/yebB | Holliday junction DNA helicase motor protein/hypothetical protein |
? | REL606 | = 2078183 | 86 (0.840) | coding (1712/3306 nt) | yegE | predicted diguanylate cyclase, GGDEF domain signalling protein |
Only 100 of 102 total aligned reads displayed.
AAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTCG > REL606/1924928‑1924996 | aaaTGCGTAATAAAAATATACATTGCGCCTCCTGa > 1:14114372/1‑35 (MQ=255) aaaTGCGTAATAAAAATATACATTGCGCCTCCTGa > 1:9482200/1‑35 (MQ=255) aaaTGCGTAATAAAAATATACATTGCGCCTCCTGa < 1:1749997/35‑1 (MQ=255) aaaTGCGTAATAAAAATATACATTGCGCCTCCTGa < 1:16513399/35‑1 (MQ=255) aaaTGCGTAATAAAAATATACATTGCGCCTCCTGa > 1:2199191/1‑35 (MQ=255) aaaTGCGTAATAAAAATATACATTGCGCCTCCTGa < 1:17164633/35‑1 (MQ=255) aaaTGCGTAATAAAAATATACATTGCGCATCCTGa < 1:12648738/35‑1 (MQ=255) aaTGCGTAATAAAAATATACATTGCGCCTCCTGaa < 1:9351409/35‑1 (MQ=255) aaTGCGTAATAAAAATATACATTGCGCCTCCTGaa < 1:6466284/35‑1 (MQ=255) aaTGCGTAATAAAAATATACATTGCGCCTCCTGaa < 1:7623276/35‑1 (MQ=255) aaTGCGTAATAAAAATATACATTGCGCCTCCTGaa > 1:2413908/1‑35 (MQ=255) ggtgaagccgtggtctgtattgatatggcgaaaaa < 1:14541309‑M1/3‑1 (MQ=255) ggtgaagccgtggtctgtattgatatggcgaaaaa < 1:17291426‑M1/3‑1 (MQ=255) aTGCGTAATAAAAATATACATTGCGCCTCCTGaaa > 1:17268575/1‑35 (MQ=255) aTGCGTAATAAAAATATACATTGCGCCTCCTGaaa < 1:3607079/35‑1 (MQ=255) aTGCGTAATAAAAATATACATTGCGCCTCCTGaaa > 1:17548449/1‑35 (MQ=255) aTGCGTAATAAAAATATACATTGCGCCTCCTGaaa > 1:15741345/1‑35 (MQ=255) tGCGTAATAAAAATATACATTGCGCCTCCTGaaaa > 1:15087760/1‑35 (MQ=255) gtgaagccgtggtctgtattgatatggcgaaaaaa < 1:8758845‑M1/4‑1 (MQ=255) tgaagccgtggtctgtattgatatggcgaaaaaaa < 1:18675770‑M1/5‑1 (MQ=255) gCGTAATAAAAATATACATTGCGCCTCCTGaaaaa < 1:17128826/35‑1 (MQ=255) gaagccgtggtctgtattgatatggcgaaaaaaaa < 1:4540234‑M1/6‑1 (MQ=255) gaagccgtggtctgtattgatatggcgaaaaaaaa < 1:18501860‑M1/6‑1 (MQ=255) gaagccgtggtctgtattgatatggcgaaaaaaaa < 1:14781394‑M1/6‑1 (MQ=255) cGTAATAAAAATATACATTGCGCCTCCTGaaaaaa > 1:14882452/1‑35 (MQ=255) cGTAATAAAAATATACATTGCGCCTCCTGaaaaaa > 1:10528585/1‑35 (MQ=255) cGTAATAAAAATATACATTGCGCCTCCTGaaaaaa < 1:5382785/35‑1 (MQ=255) cGTAATAAAAATATACATTGCGCCTCCTGaaaaaa > 1:20227188/1‑35 (MQ=255) cGTAATAAAAATATACATTGCGCCTCCTGaaaaaa > 1:1208299/1‑35 (MQ=255) gTAATAAAAATATACATTGCGCCTCCTGAAAaaat < 1:3617496/35‑1 (MQ=255) gTAATAAAAATATACATTGCGCCTCCTGAAAaaat > 1:12282217/1‑35 (MQ=255) aagccgtggtctgtattgatatggcgaaaaaaaaa < 1:11169321‑M1/7‑2 (MQ=255) taataaAAATATACATTGCGCCTCCTGAAAaaata > 1:20112799/1‑35 (MQ=255) agccgtggtctgtattgatatggcgaaAAAaaata < 1:14398271‑M1/8‑1 (MQ=255) aataaAAATATACATTGCGCCTCCTGAAAaaataa < 1:8750760/35‑1 (MQ=255) ccgtggtctgtattgatatggcgaaAAaaaataac < 1:4708753‑M1/10‑2 (MQ=255) ataaAAATATACATTGCGCCTCCTGAAAaaataaa > 1:11992179/1‑35 (MQ=255) taaAAATATACATTGCGCCTCCTGAAAaaataaat < 1:5307012/35‑1 (MQ=255) cgtggtctgtattgatatggcgaaAAaaaataaac < 1:10485714‑M1/11‑2 (MQ=255) gtggtctgtattgatatggcgaaAAAAAATAAAtt < 1:19771840‑M1/12‑1 (MQ=255) aaaaaTATACATTGCGCCTCCTGAAAAAATAAAtt < 1:6867938/35‑1 (MQ=255) aaaaTATACATTGCGCCTCCTGAAAAAATAAAttt > 1:11884746/1‑35 (MQ=255) aaaaTATACATTGCGCCTCCTGAAAAAATAAAttt > 1:12096940/1‑35 (MQ=255) ggtctgtattgatatggcgaaAAAAAATAAAtttt < 1:3755659‑M1/14‑1 (MQ=255) aaaTATACATTGCGCCTCCTGAAAAAATAAAtttt > 1:11370744/1‑35 (MQ=255) aaaTATACATTGCGCCTCCTGAAAAAATAAAtttt > 1:4617573/1‑35 (MQ=255) aaTATACATTGCGCCTCCTGAAAAAATAAAttttt < 1:7249995/35‑1 (MQ=255) atatACATTGCGCCTCCTGAAAAAATAAAtttttt < 1:19079404/35‑1 (MQ=255) atatACATTGCGCCTCCTGAAAAAATAAAtttttt > 1:15484846/1‑35 (MQ=255) atatACATTGCGCCTCCTGAAAAAATAAAtttttt > 1:15874085/1‑35 (MQ=255) tataCATTGCGCCTCCTGAAAAAATAAATTTTTTa < 1:13723001/35‑1 (MQ=255) ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt < 1:12133238/35‑1 (MQ=255) ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt < 1:8533865/35‑1 (MQ=255) ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt < 1:18464955/35‑1 (MQ=255) ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt > 1:8465776/1‑35 (MQ=255) ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt > 1:13038311/1‑35 (MQ=255) ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt > 1:14947933/1‑35 (MQ=255) ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt > 1:16267587/1‑35 (MQ=255) ataCATTGCGCCTCCTGAAAAAATAAATTTTTTAt > 1:2383418/1‑35 (MQ=255) aCATTGCGCCTCCTGAAAAAATAAATTTTTTATGc < 1:18573750/35‑1 (MQ=255) cATTGCGCCTCCTGAAAAAATAAATTTTTTATGCt > 1:16981463/1‑35 (MQ=255) aTTGCGCCTCCTGAAAAAATAAATTTTTTATGCTa > 1:17266419/1‑35 (MQ=255) aTTGCGCCTCCTGAAAAAATAAATTTTTTATGCTa > 1:547602/1‑35 (MQ=255) aTTGCGCCTCCTGAAAAAATAAATTTTTTATGCTa < 1:19598581/35‑1 (MQ=255) aTTGCGCCTCCTGAAAAAATAAATTTTTTATGCTa > 1:17454409/1‑35 (MQ=255) aTTGCGCCTCCTGAAAAAATAAATTTTTTATGCTa < 1:15608624/35‑1 (MQ=255) aTTGCGCCTCCTGAAAAAATAAATTTTTTATGCTa < 1:8231403/35‑1 (MQ=255) aTTGCACCTCCTGAAAAAATAAATTTTTTATGCTa > 1:6817701/1‑35 (MQ=255) ttGCGCCTCCTGAAAAAATAAATTTTTTATGCTAt > 1:7884283/1‑35 (MQ=255) tGCGCCTCCTGAAAAAATAAATTTTTTATGCTAtt > 1:8292269/1‑35 (MQ=255) gcgcCTCCTGAAAAAATAAATTTTTTATGCTATTa < 1:11105253/35‑1 (MQ=255) cgcCTCCTGAAAAAATAAATTTTTTATGCTATTAc < 1:6777026/35‑1 (MQ=255) cgcCTCCTGAAAAAATAAATTTTTTATGCTATTAc < 1:5545035/35‑1 (MQ=255) cgcCTCCTGAAAAAATAAATTTTTTATGCTATTAc < 1:11808909/35‑1 (MQ=255) cgcCTCCTGAAAAAATAAATTTTTTATGCTATTAc < 1:20299177/35‑1 (MQ=255) cgcCTCCTGAAAAAATAAATTTTTTATGCTATTAc < 1:9531871/35‑1 (MQ=255) gcCTCCTGAAAAAATAAATTTTTTATGCTATTACg > 1:2998830/1‑35 (MQ=255) gcCTCCTGAAAAAATAAATTTTTTATGCTATTACg < 1:6359161/35‑1 (MQ=255) gcCTCCTGAAAAAATAAATTTTTTATGCTATTACg < 1:13220597/35‑1 (MQ=255) cctcctGAAAAAATAAATTTTTTATGCTATTACGt < 1:18238268/35‑1 (MQ=255) cctcctGAAAAAATAAATTTTTTATGCTATTACGt > 1:9293846/1‑35 (MQ=255) cctcctGAAAAAATAAATTTTTTATGCTATTACGt > 1:13311446/1‑35 (MQ=255) ccgcctGAAAAAATAAATTTTTTATGCTATTACGt < 1:19538851/32‑1 (MQ=255) ctcctGAAAAAATAAATTTTTTATGCTATTACGta < 1:7406314/35‑1 (MQ=255) ctcctGAAAAAATAAATTTTTTATGCTATTACGta < 1:7372026/35‑1 (MQ=255) ctcctGAAAAAATAAATTTTTTATGCTATTACGta > 1:13669237/1‑35 (MQ=255) tcctGAAAAAATAAATTTTTTATGCTATTACGtat < 1:5130552/35‑1 (MQ=255) tcctGAAAAAATAAATTTTTTATGCTATTACGtat > 1:17395945/1‑35 (MQ=255) tcctGAAAAAATAAATTTTTTATGCTATTACGtat < 1:2707120/35‑1 (MQ=255) cctGAAAAAATAAATTTTTTATGCTATTACGtata > 1:13713199/1‑35 (MQ=255) cctGAAAAAATAAATTTTTTATGCTATTACGtata > 1:19977642/1‑35 (MQ=255) cctGAAAAAATAAATTTTTTATGCTATTACGtata < 1:2041785/35‑1 (MQ=255) tGAAAAAATAAATTTTTTATGCTATTACGTATAtt > 1:13793101/1‑35 (MQ=255) gAAAAAATAAATTTTTTATGCTATTACGTATATTc > 1:18932072/1‑35 (MQ=255) aaaaaaTAAATTTTTTATGCTATTACGTATATTCg < 1:7442916/35‑1 (MQ=255) aaaaaaTAAATTTTTTATGCTATTACGTATATTCg > 1:7919287/1‑35 (MQ=255) aaaaaaTAAATTTTTTATGCTATTACGTATATTCg > 1:4955114/1‑35 (MQ=255) aaaaaaTAAATTTTTTATGCTATTACGTATATTCg < 1:19503020/35‑1 (MQ=255) aaaaaaTAAATTTTTTATGCTATTACGTATATTCg < 1:2281139/35‑1 (MQ=255) aaaaaaTAAATTTTTTATGCTATTACGTATATTCg > 1:10969563/1‑35 (MQ=255) | AAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTCG > REL606/1924928‑1924996 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |