New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 413197 = | 80 (0.780) | 16 (0.210) | 3/36 | NT | 19.4% | coding (93/492 nt) | yajQ | nucleotide‑binding protein |
? | REL606 | 3219746 = | 73 (0.950) | coding (344/477 nt) | agaB | N‑acetylgalactosamine‑specific enzyme IIB component of PTS |
Only 100 of 179 total aligned reads displayed.
GATGTCAACGTCGGCAATATGCATTTCTCGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCGAT > REL606/3219712‑3219780 | gttcagctcaaatgaggcttcaacgttacggaagg > 1:8656915‑M2/35‑35 (MQ=255) gttcagctcaaatgaggcttcaacgttacggaagg > 1:5347550‑M2/35‑35 (MQ=255) gttcagctcaaatgaggcttcaacgttacggaagg > 1:5766279‑M2/35‑35 (MQ=255) gttcagctcaaatgaggcttcaacgttacggaagg > 1:17425403‑M2/35‑35 (MQ=255) ttcagctcaaatgaggcttcaacgttacggaaggg > 1:7434785‑M2/34‑35 (MQ=255) ttcagctcaaatgaggcttcaacgttacggaaggc > 1:9198114‑M2/34‑34 (MQ=255) aTGTCAACGTCGGCAATATGCATTTCTCGGAAggg < 1:16298711/35‑1 (MQ=255) tGTCAACGTCGGCAATATGCATTTCTCGGAAGGGa > 1:401759/1‑35 (MQ=255) tGTCAACGTCGGCAATATGCATTTCTCGGAAGGGa < 1:4165963/35‑1 (MQ=255) cagctcaaatgaggcttcaacgttacggaaggcga > 1:15843176‑M2/32‑32 (MQ=255) cagctcaaatgaggcttcaacgttacggaagGGaa > 1:2203118‑M2/32‑35 (MQ=255) tCAACGTCGGCAATATGCATTTCTCGGAATGGaaa > 1:11395433/1‑35 (MQ=255) tCAACGTCGGCAATATGCATTTCTCGGAAGGGaaa < 1:10367399/35‑1 (MQ=255) agctcaaatgaggcttcaacgttacggaagGCaaa > 1:11051676‑M2/31‑35 (MQ=255) gctcaaatgaggcttcaacgttacggaagGGgaaa > 1:14642558‑M2/30‑35 (MQ=255) gctcaaatgaggcttcaacgttacggaagGGaaaa > 1:15468086‑M2/30‑35 (MQ=255) gctcaaatgaggcttcaacgttacggaagGGaaaa > 1:10720094‑M2/30‑35 (MQ=255) ctcaaatgaggcttcaacgttacggaagGgaaaac > 1:5165975‑M2/29‑34 (MQ=255) ctcaaatgaggcttcaacgttacggaagGGcaaaa > 1:15205848‑M2/29‑35 (MQ=255) ctcaaatgaggcttcaacgttacggaagGGcaaaa > 1:10848508‑M2/29‑35 (MQ=255) aaCGTCGGCAATATGCATTTCTCGGAAGGGaaaaa < 1:8045039/35‑1 (MQ=255) tcaaatgaggcttcaacgttacggaagGgaaaaac > 1:12516152‑M2/28‑34 (MQ=255) tcaaatgaggcttcaacgttacggaagGgaaaaaa > 1:3294799‑M2/28‑34 (MQ=255) tcaaatgaggcttcaacgttacggaagGGAAAAAg > 1:1150538‑M2/28‑35 (MQ=255) aCGTCGGCAATATGCATTTCTCGGAAGGGAAAAAg > 1:18060163/1‑35 (MQ=255) aCGTCGGCAATATGCATTTCTCGGAAGGGAAAAAg < 1:9812998/35‑1 (MQ=255) aCGTCGGCAATATGCATTCCTCGGAAGGGAAAAAg > 1:19854878/1‑35 (MQ=255) caaatgaggcttcaacgttacggaagggaaaacag > 1:2117581‑M2/27‑32 (MQ=255) cGTCGGCAATATGCATTTCTCGGAAGGGAAAAAGc > 1:13133352/1‑35 (MQ=255) cGTCGGCAATATGCATTTCTCGGAAGGGAAAAAGc > 1:6989095/1‑35 (MQ=255) cGTCGGCAATATGCATTTCTCGGAAGGGAAAAAGc > 1:18943867/1‑35 (MQ=255) cGTCGGCAATATGCATTTCTCGGAAGGGAAAAAGc < 1:8529010/35‑1 (MQ=255) gTCGGCAATATGCATTTCTCGGAAGGGAAAAAGCa > 1:13359076/1‑35 (MQ=255) gTCGGCAATATGCATTTCTCGGAAGGGAAAAAGCa > 1:4133696/1‑35 (MQ=255) gTCGGCAATATGCATTTCTCGGAAGGGAAAAAGCa > 1:20261845/1‑35 (MQ=255) gTCGGCAATATGCATTTCTCGGAAGGGAAAAAGCa > 1:19262509/1‑35 (MQ=255) aaatgaggcttcaacgttacggaagggaaaaaaag > 1:3005434‑M2/26‑32 (MQ=255) tCGGCAATATGCATTTCTCGGAAGGGAAAAAGCaa < 1:9636698/35‑1 (MQ=255) tCGGCAATATGCATTTCTCGGAAGGGAAAAAGCaa > 1:3171016/1‑35 (MQ=255) cGGCAATATGCATTTCTCGGAAGGGAAAAAGCaaa < 1:16582508/35‑1 (MQ=255) cGGCAATATGCATTTCTCGGAAGGGAAAAAGCaaa > 1:6136473/1‑35 (MQ=255) cGGCAATATGCATTTCTCGGAAGGGAAAAAGCaaa < 1:17259811/35‑1 (MQ=255) cGGCAATATGCATTTCTCGGAAGGGAAAAAGCaaa < 1:11569878/35‑1 (MQ=255) cGGCAATAAGCATTTCTCGGAAGGGAAAAAGCaaa < 1:5665555/35‑1 (MQ=255) ggCAATATGCATTTCTCGGAAGGGAAAAAGCAAAt < 1:19833155/35‑1 (MQ=255) ggCAATATGCATTTCTCGGAAGGGAAAAAGCAAAt > 1:20161573/1‑35 (MQ=255) ggCAATATGCATTTCTCGGAAGGGAAAAAGCAAAt < 1:174288/35‑1 (MQ=255) gCAATATGCATTTCTCGGAAGGGAAAAAGCAAATc < 1:890074/35‑1 (MQ=255) cAATATGCATTTCTCGGAAGGGAAAAAGCAAATca < 1:17023659/35‑1 (MQ=255) cAATATGCATTTCTCGGAAGGGAAAAAGCAAATca > 1:6060712/1‑35 (MQ=255) cAATATGCATTTCTCGGAAGGGAAAAAGCAAATca > 1:12222201/1‑35 (MQ=255) aaTATGCATTTCTCGGAAGGGAAAAAGCAAATcag < 1:7586922/35‑1 (MQ=255) aaTATGCATTTCTCGGAAGGGAAAAAGCAAATcag < 1:9292497/35‑1 (MQ=255) aaTATGCATTTCTCGGAAGGGAAAAAGCAAATcag < 1:17610545/35‑1 (MQ=255) atatGCATTTCTCGGAAGGGAAAAAGCAAATcagc > 1:16739887/1‑35 (MQ=255) atatGCATTTCTCGGAAGGGAAAAAGCAAATcagc < 1:18757641/35‑1 (MQ=255) atatGCATTTCTCGGAAGGGAAAAAGCAAATcagc < 1:8675091/35‑1 (MQ=255) tatGCATTTCTCGGAAGGGAAAAAGCAAATcagca > 1:4273435/1‑35 (MQ=255) tatGCATTTCTCGGAAGGGAAAAAGCAAATcagca < 1:361100/35‑1 (MQ=255) tatGCATTTCTCGGAAGGGAAAAAGCAAATcagca < 1:16093899/35‑1 (MQ=255) tatGCATTTCTCGGAAGGGAAAAAGCAAATcagca > 1:2382191/1‑35 (MQ=255) atGCATTTCTCGTAAGGGAAAAAGCAAATcagcag > 1:12662565/1‑35 (MQ=255) atGCATTTCTCGGAAGGGAAAAAGCAAATcagcag < 1:11742338/35‑1 (MQ=255) atGCATTTCTCGGAAGGGAAAAAGCAAATcagcag < 1:13982418/35‑1 (MQ=255) atGCATTTCTCGGAAGGGAAAAAGCAAATcagcag > 1:602304/1‑35 (MQ=255) tGCATTTCTCGGAAGGGAAAAAGCAAATcagaaga > 1:490587/1‑34 (MQ=255) tGCATTTCTCGGAAGGGAAAAAGCAAATCAGCAGt > 1:20251950/1‑35 (MQ=255) tGCATTTCTCGGAAGGGAAAAAGCAAATCAGCAGt > 1:9188720/1‑35 (MQ=255) gCATTTCTCGGAAGGGAAAAAGCAAATCAGCAGTa > 1:8098302/1‑35 (MQ=255) gCATTTCTCGGAAGGGAAAAAGCAAATCAGCAGTa > 1:472452/1‑35 (MQ=255) gCATTTCTCGGAAGGGAAAAAGCAAATCAGCAGTa < 1:13956980/35‑1 (MQ=255) cATTTCTCGGAAGGGAAAAAGCAAATCAGCAGTaa > 1:10461325/1‑35 (MQ=255) aTTTCTCGGAAGGGAAAAAGCAAATCAGCAGTaaa < 1:14811781/35‑1 (MQ=255) tttCTCGGAAGGGAAAAAGCAAATCAGCAGTAAAg < 1:10013311/35‑1 (MQ=255) ttCTCGGAAGGGAAAAAGCAAATCAGCAGTAAAGt > 1:18801750/1‑35 (MQ=255) tctcGGAAGGGAAAAAGCAAATCAGCAGTAAAGtt > 1:12265210/1‑35 (MQ=255) tctcGGAAGGGAAAAAGCAAATCAGCAGTAAAGtt < 1:7254922/35‑1 (MQ=255) tctcGGAAGGGAAAAAGCAAATCAGCAGTAAAGtt < 1:19247601/35‑1 (MQ=255) ctcGGAAGGGAAAAAGCAAATCAGCAGTAAAGttt < 1:9324073/35‑1 (MQ=255) ctcGGAAGGGAAAAAGCAAATCAGCAGTAAAGttt < 1:6566673/35‑1 (MQ=255) ctcGGAAGGGAAAAAGCAAATCAGCAGTAAAGttt > 1:10525676/1‑35 (MQ=255) tcGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTa > 1:7953804/1‑35 (MQ=255) cggaagGGAAAAAGCAAATCAGCAGTAAAGTTTAt < 1:5916252‑M2/29‑1 (MQ=255) cggaagGGAAAAAGCAAATCAGCAGTAAAGTTTAt < 1:4743684‑M2/29‑1 (MQ=255) cggaagGGAAAAAGCAAATCAGCAGTAAAGTTTAt > 1:7285139‑M2/7‑35 (MQ=255) cggaagGGAAAAAGCAAATCAGCAGTAAAGTTTAt > 1:19202480‑M2/7‑35 (MQ=255) ggaagGGAAAAAGCAAATCAGCAGTAAAGTTTATg < 1:13827298‑M2/30‑1 (MQ=255) ggAAGGGAAAAATCAAGTCAGCAGTAAAGTTTATg > 1:4579332/1‑35 (MQ=38) gaagGGAAAAAGCAAATCAGCAGTAAAGTTTATGt < 1:3873023‑M2/31‑1 (MQ=255) gaagGGAAAAAGCAAATCAGCAGTAAAGTTTATGt > 1:20398023‑M2/5‑35 (MQ=255) aagGGAAAAAGCAAATCAGCAGTAAAGTTTATGTc < 1:8389287‑M2/32‑1 (MQ=255) aagGGAAAAAGCAAATCAGCAGTAAAGTTTATGTc > 1:2566234‑M2/4‑35 (MQ=255) agGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCg < 1:7774996‑M2/33‑1 (MQ=255) agGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCg < 1:3592286‑M2/33‑1 (MQ=255) agGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCg < 1:914101‑M2/33‑1 (MQ=255) agGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCg > 1:13678101‑M2/3‑35 (MQ=255) agGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCg < 1:3694095‑M2/33‑1 (MQ=255) gGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCGa > 1:15299185‑M2/2‑35 (MQ=255) ggAAAAAGCAAATCAGCAGTAAAGTTTATGTCGAt < 1:1776387/35‑1 (MQ=255) ggAAAAAGCAAATCAGCAGTAAAGTTTATGTCGAt < 1:5223359/35‑1 (MQ=255) | GATGTCAACGTCGGCAATATGCATTTCTCGGAAGGGAAAAAGCAAATCAGCAGTAAAGTTTATGTCGAT > REL606/3219712‑3219780 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |