New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 422594 = | 77 (0.750) | 21 (0.220) | 7/44 | NT | 23.0% | intergenic (‑281/+181) | cyoA/ampG | cytochrome o ubiquinol oxidase subunit II/muropeptide transporter |
? | REL606 | = 3721305 | 76 (0.740) | coding (669/1191 nt) | lldD | L‑lactate dehydrogenase, FMN‑linked |
TTATTTTCCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/422607‑422594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGCCGATGTAATCTTCCAGTCCGGTCGGTTTG < REL606/3721305‑3721272 || aaATTTTCCCCCCCCCCCAGCCGATGTAATCTTCC < 1:18710264/33‑1 aATTTTCTCCCCCCCCCAGCCGATGTAATCTTCCA < 1:13785931/34‑1 ATTTTTCCCCCCCCCCAGCCGATGTAATCTTCCAG < 1:12296212/35‑1 ATTTTCCCCCCCCCCCAGCCGATGTAATCTTCCAG < 1:2348719/35‑1 ATTTTCCCCCCCCCCCAGCCGATGTAATCTTCCAG < 1:17894094/35‑1 gTTTCCCCCCCCCCCAGCCGATGTAATCTTCCAGT < 1:18464002/34‑1 TTTTCCCCCCCCCCCAGCCGATGTAATCTTCCAGT < 1:7743100/35‑1 TTTTCCCCCCCCCCCAGCCGATGTAATCTTCCAGT < 1:4658852/35‑1 TTTCCCCCCCCCCCAGCCGATGTAATCTTCCAGTC < 1:6881235/35‑1 TTTCCCCCCCCCCCAGCCGATGTAATCTTCCAGTC < 1:18016465/35‑1 TTTCCCCCCCACCCAGCCGATGTAATCTTCCAGTC < 1:12207830/35‑1 TTCCCCCCCCCCCAGCCGATGTAATCTTCCAGTCC < 1:11784737/35‑1 TTCCCCCCCCCCCAGCCGATGTAATCTTCCAGTCC < 1:18478216/35‑1 tgCCCCCCCCCCAGCCGATGTAATCTTCCAGTCCG < 1:5192345/33‑1 cCCCCCCCCCCCAGCCGATGTAATCTTCCAGTCCG < 1:9995398/34‑1 TCCCCCCCCCCCAGCCGATGTAATCTTCCAGTCCG < 1:10885431/35‑1 CCCCCCCGCCCAGCCGATGTAATCTTCCAGTCCGG < 1:2384379/35‑1 CCCCCCCCCCCAGCCGATGTAATCTTCCAGTCCGG < 1:18230304/35‑1 CCCCCCCCCCCAGCCGATGTAATCTTCCAGTCCGG < 1:2888696/35‑1 CCCCCCCCCCAGCCGATGTAATCTTCCAGTCCGGT < 1:4534102/35‑1 CCCCCCCCCCAGCCGATGTAATCTTCCAGTCCGGT < 1:4258475/35‑1 CCCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTC < 1:10077958/35‑1 CCCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTC < 1:1625819/35‑1 CCCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTC < 1:5169051/35‑1 CCCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTC < 1:13580606/35‑1 CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG < 1:10319730/35‑1 CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG < 1:7411329/35‑1 CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG < 1:10943397/35‑1 CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG < 1:3907711/35‑1 CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG < 1:3488904/35‑1 CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG < 1:16166460/35‑1 CCCCCCCCAGCCGATGTAATCTTCCAGTCCGGTCG < 1:16872806/35‑1 CCCACCCAGCCGATGTAATCTTCCAGTCCGGTCGG < 1:18972094/35‑1 CCCCCCAGCCGATGTAATCTTACAGTCCGGTCGGT < 1:16229267/35‑1 CCCCCCAGCCGATGTAATCTCCCAGTCCGGTCGGT < 1:19098206/35‑1 CCCCAGCCGATGTAATCTTCCAGTCCGGTCGGTTT < 1:14813667/35‑1 CCCCAGCCGATGTAATCTTCCAGTCCGGTCGGTTT < 1:6995359/35‑1 CCCCAGCCGATGTAATCTTCCAGTCCGGTCGGTTT < 1:7409213/35‑1 CCCCAGCCGATGTAATCTTCCAGTCCGGTCGGTTT < 1:7749575/35‑1 CCCAGCCGATGTAATCTTCCAGTCCGGTCGGTTTG < 1:15443920/35‑1 || TTATTTTCCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/422607‑422594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGCCGATGTAATCTTCCAGTCCGGTCGGTTTG < REL606/3721305‑3721272 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |