New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 66468767 (0.650)34 (0.380) 20/42 NT 39.4% intergenic (‑78/‑48) gltL/insJ‑2 ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein
?REL606 666134 = 46 (0.510)pseudogene (354/387 nt) gltL ATP‑binding protein of glutamate/aspartate transport system; b0652_2

TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/664651‑664687
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGT  >  REL606/666134‑666167
                                                                       
TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGT                                      >  1:8096452/1‑35
TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGT                                      <  1:11367462/35‑1
TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGT                                      >  1:2698178/1‑35
TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGT                                      <  1:17761659/35‑1
TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGT                                      <  1:16994752/35‑1
TGGCGTGAGCAGAAAGCCAGACACGCTCCAGCAGT                                      <  1:17875394/35‑1
 GGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTT                                     <  1:925315/35‑1
 GGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTT                                     <  1:14573383/35‑1
 GGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTT                                     >  1:14514097/1‑35
  GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                    <  1:9764151/35‑1
  GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                    >  1:6377989/1‑35
  GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                    >  1:6207203/1‑35
  GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                    <  1:6094446/35‑1
  GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                    >  1:5956293/1‑35
  GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                    <  1:2077420/35‑1
  GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                    >  1:19666822/1‑35
  GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT                                    >  1:13208324/1‑35
  GCGTGAGCAGAAAGCCCGACACGCTCAAGCAGTTT                                    <  1:18788940/35‑1
    GTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTCA                                  <  1:297568/35‑1
     TGAGCAGAAAGCCCGACACGCTCCAGCAGTTTCAG                                 <  1:4240718/35‑1
     TGAGCAGAAAGCCCGACACGCTCCAGCAGTTTCAG                                 <  1:14445182/35‑1
      GAGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGG                                >  1:7643158/1‑35
      GAGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGG                                >  1:13700005/1‑35
       AGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGGG                               >  1:8894899/1‑35
       AGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGGG                               >  1:8034156/1‑35
       AGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGGG                               >  1:7444281/1‑35
       AGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGGG                               <  1:11056321/35‑1
       AGCAGAAAGCCCGACACGCTCCAGCAGTTTCAGGG                               >  1:11672344/1‑35
        GCAGAAAGCCCGACACGCTCCAGCAGTTTCAGGGC                              <  1:1798987/35‑1
         CAGAAAGCCCGACACGCTCCAGCAGTTTCAGGGCT                             >  1:2307506/1‑35
         CAGAAAGCCCGACACGCTCCAGCAGTTTCAGGGCT                             >  1:15354950/1‑35
         CAGAAAGCCCGACACGCTCCAGCAGTTTCAGGGCT                             >  1:17604265/1‑35
         CAGAAAGCCCGACACGCTCCAGCAGTTTCAGGGCT                             >  1:8904595/1‑35
          AGAAAGCCCGACACGCTCCAGCAGTTTCAGGGCTT                            >  1:3326065/1‑35
           GAAAGCCCGACACGCTCCAGCAGTTTCAGGGCTTT                           <  1:18055978/35‑1
            AAAGCCCGACACGCTCCAGCAGTTTCAGGGCTTTT                          <  1:4141127/35‑1
            AAAGCCCGACACGCTCCAGCAGTTTCAGGGCTTTT                          >  1:3194309/1‑35
            AAAGCCCGACACGCTCCAGCAGTTTCAGGGCTTTT                          <  1:1033279/35‑1
             AAGCCCGACACGCTCCAGCAGTTTCAGGGCTTTTT                         <  1:4286815/35‑1
              AGCCCGACACGCTCCAGCAGTTTCAGTGCTTTTTC                        >  1:16567051/1‑35
              AGCCCGACACGCTCCAGCAGTTTCAGGGCTTTTTC                        >  1:16035788/1‑35
              AGCCCGACACGCTCCAGCAGTTTCAGGGCTTTTTC                        <  1:14146082/35‑1
              AGCCCGACACGCTCCAGCAGTTTCAGGGCTTTTTC                        >  1:2946758/1‑35
               GCCCGACACGCTCCAGCAGTTTCAGGGCTTTTTCA                       <  1:7245831/35‑1
                 caGACACGCTCCAGCAGTTTCAGGGCTTTTTCACG                     <  1:17729976/33‑1
                 CCGACACGCTCCAGCAGTTTCAGGGCTTTTTCACG                     <  1:12566898/35‑1
                 CCGACACGCTCCAGCAGTTTCAGGGCTTTTTCACG                     <  1:4427430/35‑1
                 CCGACACGCTCCAGAAGTTTCAGGGCTTTTTCACG                     <  1:6107851/35‑1
                  CGACACGCTCCAGCAGTTTCAGGGCTTTTTCACGA                    >  1:10531586/1‑35
                  CGACACGCTCCAGCAGTTTCAGGGCTTTTTCACGA                    >  1:12694022/1‑35
                   GACACGCTCCAGCAGTTTCAGGGCTTTTTCACGAG                   <  1:12512290/35‑1
                   GACACGCTCCAGCAGTTTCAGGGCTTTTTCACGAG                   <  1:6878917/35‑1
                     CACGCTCCAGCAGTTTCAGGGCTTTTTCACGAGCC                 <  1:16521062/35‑1
                     CACGCTCCAGCAGTTTCAGGGCTTTTTCACGAGCC                 >  1:11021193/1‑35
                     CACGCTCCAGCAGTTTCAGGGCTTTTTCACGAGCC                 >  1:3986679/1‑35
                     CACGCTCCAGCAGTTTCAGGGCTTTTTCACGAGCC                 >  1:17114661/1‑35
                      ACGCTCCAGCAGTTTCAGGGCTTTTTCACGAGCCG                >  1:7894340/1‑35
                       CGCTCCAGCAGTTTCAGGGCTTTTTCACGAGCCGG               <  1:15239560/35‑1
                         CTCCAGCAGTTTCAGGGCTTTTTCACGAGCCGGCG             >  1:15729134/1‑35
                           CCAGCAGTTTCAGGGCTTTTTCACGAGCCGGCGCT           >  1:2621667/1‑35
                            CAGCAGTTTCAGGGCTTTTTCACGAGCCGGCGCTT          >  1:19839372/1‑35
                            CAGCAGTTTCAGGGCTTTTTCACGAGCCCGCGCTT          >  1:16246715/1‑35
                               CAGTTTCAGGGCTTTTTCACGAGCCGGCGCTTTAT       >  1:7357921/1‑35
                                  TTTCAGGGTTTTTTCACGAGCCGGCGCTTTATCGC    <  1:16753271/35‑1
                                  TTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGC    >  1:2869030/1‑35
                                  TTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGC    <  1:12286736/35‑1
                                   TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCN   <  1:6527019/35‑1
                                    TCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGT  >  1:11408631/1‑35
                                    TCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGT  <  1:4012538/35‑1
                                                                       
TGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/664651‑664687
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGT  >  REL606/666134‑666167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.