New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 370831 =66 (0.640)3 (0.050) 3/28 NT 8.4% intergenic (+23/‑96) phoA/psiF bacterial alkaline phosphatase/hypothetical protein
?REL606 4533970 = 27 (0.450)coding (156/1461 nt) uxuB D‑mannonate oxidoreductase, NAD‑binding

Only 100 of 117 total aligned reads displayed.

ATACCCATCATCTGCTGGAAAGCACCGACAGCGACTGGGGCATCTGCGAAGTTAACCTGATGCCAGGCA  >  REL606/4533936‑4534004
                                  |                                  
ataCCCATCATCTGCTGGAAAGCACCGACAGCGAc                                    >  1:2304575/1‑35 (MQ=255)
ataCCCATCATCTGCTGGAAAGCACCGACAGCGAc                                    >  1:15116319/1‑35 (MQ=255)
  aCCCATCATCTGCTGGAAAGCACCGACAGCTACTg                                  >  1:16984321/1‑35 (MQ=255)
  aCCCATCATCTGCTGGAAAGCACCGACAGCGACTg                                  >  1:19793685/1‑35 (MQ=255)
  aCCCATCATCTGCTGGAAAGCACCGACAGCGACTg                                  >  1:7907181/1‑35 (MQ=255)
  aCCCATCATCTGCTGGAAAGCACCGACAGCGACTg                                  >  1:20368951/1‑35 (MQ=255)
   cccATCATCTGCTGGAAAGCACCGACAGCGACTgg                                 >  1:5458687/1‑35 (MQ=255)
   cccATCATCTGCTGGAAAGCACCGACAGCGACTgg                                 >  1:20266587/1‑35 (MQ=255)
   cccATCATCTGCTGGAAAGCACCGACAGCGACCgg                                 >  1:4300464/1‑35 (MQ=255)
     catcatCTGCTGGAAAGCACCGACAGCGACTgggg                               >  1:3307681/1‑35 (MQ=255)
     catcatCTGCTGGAAAGCACCGACAGCGACTgggg                               >  1:17373135/1‑35 (MQ=255)
       tcatcTGCTGGAAAGCACCGACAGCGACTGGGGCa                             >  1:1856403/1‑35 (MQ=255)
       tcatcTGCTGGAAAGCACCGACAGCGACTGGGGCa                             >  1:10412673/1‑35 (MQ=255)
         atcTGCTGGAAAGCACCGACAGCGACTGGGGCATc                           >  1:18257702/1‑35 (MQ=255)
         atcTGCTGGAAAGCACCGACAGCGACTGGGGCATc                           >  1:5806958/1‑35 (MQ=255)
          tcTGCTGGAAAGCACCGACAGCGACTGGGGCATCt                          >  1:17222124/1‑35 (MQ=255)
           ctgctgGAAAGCACCGACAGCGACTGGGGCATCTg                         >  1:19686263/1‑35 (MQ=255)
           ctgctgGAAAGCACCGACAGCGACTGGGGCATCTg                         >  1:12684462/1‑35 (MQ=255)
            tgctgGAAAGCACCGACAGCGACTGGGGCATCTGc                        >  1:5346891/1‑35 (MQ=255)
            tgctgGAAAGCACCGACAGCGACTGGGGCATCTGc                        >  1:11178260/1‑35 (MQ=255)
            tgctgGAAAGCACCGACAGCGACTGGGGCATCTGc                        >  1:8551616/1‑35 (MQ=255)
            tgctgGAAAGCACCGACAGCGACTGGGGCATCTGc                        >  1:16879296/1‑35 (MQ=255)
             gctgGAAAGCACCGACAGCGACTGGGGCATCTGCg                       >  1:14394609/1‑35 (MQ=255)
             gctgGAAAGCACCGACAGCGACTGGGGCATCTGCg                       >  1:16239293/1‑35 (MQ=255)
             gctgGAAAGCACCGACAGCGACTGGGGCATCTGCg                       >  1:11984013/1‑35 (MQ=255)
              ctgGAAAGCACCGACAGCGACTGGGGCATCTGCGa                      >  1:2096046/1‑35 (MQ=255)
              ctgGAAAGCACCGACAGCGACTGGGGCATCTGCGa                      >  1:11151649/1‑35 (MQ=255)
              ctgGAAAGCACCGACAGCGACTGGGGCATCTGCGa                      >  1:17448598/1‑35 (MQ=255)
              ctgGAAAGCACCGACAGCGACTGGGGCATCTGCGa                      >  1:4715226/1‑35 (MQ=255)
                aaaaccccccgacagcgaCTGGGGCATCTGCGAAg                    <  1:11477547‑M2/17‑1 (MQ=255)
                 gAAAGCACCGACAGCGACTGGGGCATCTGCGAAGt                   >  1:15410065/1‑35 (MQ=255)
                 gAAAGCACCGACAGCGACTGGGGCATCTGCGAAGt                   >  1:10285208/1‑35 (MQ=255)
                  aaccccccgacagcgaCTGGGGCATCTGCGAAGtt                  <  1:11891280‑M2/19‑1 (MQ=255)
                  aaaGCACCGACAGCGACTGGGGCATCTGCGAAGtt                  >  1:6148490/1‑35 (MQ=255)
                   aaGCACCGACAGCGACTGGGGCATCTGCGAAGTTa                 >  1:17934567/1‑35 (MQ=255)
                    ccccccgacagcgaCTGGGGCATCTGCGAAGTTaa                <  1:16723651‑M2/21‑1 (MQ=255)
                    aGCACCGACAGCGACTGGGGCATCTGCGAAGTTaa                >  1:3783926/1‑35 (MQ=255)
                    aGCACCGACAGCGACTGGGGCATCTGCGAAGTTaa                >  1:12374875/1‑35 (MQ=255)
                     gCACCGACAGCGACTGGGGCATCTGCGAAGTTAAc               >  1:7553408/1‑35 (MQ=255)
                     cccccgacagcgaCTGGGGCATCTGCGAAGTTAAc               <  1:11621065‑M2/22‑1 (MQ=255)
                     cccccgacagcgaCTGGGGCATCTGCGAAGTTAAc               <  1:5421707‑M2/22‑1 (MQ=255)
                     cccccgacagcgaCTGGGGCATCTGCGAAGTTAAc               <  1:1338585‑M2/22‑1 (MQ=255)
                     cccccgacagcgaCTGGGGCATCTGCGAAGTTAAc               <  1:17031703‑M2/22‑1 (MQ=255)
                     cccccGCCAGCGACTGGGGCATCTGCGAAGTTAAc               <  1:17928383/32‑1 (MQ=37)
                      ccccgacagcgaCTGGGGCATCTGCGAAGTTAAcc              <  1:3015760‑M2/23‑1 (MQ=255)
                      ccccgacagcgaCTGGGGCATCTGCGAAGTTAAcc              <  1:7355381‑M2/23‑1 (MQ=255)
                      ccccgacagcgaCTGGGGCATCTGCGAAGTTAAcc              <  1:5892746‑M2/23‑1 (MQ=255)
                      cACCGACAGCGACTGGGGCATCTGCGAAGTTAAcc              >  1:759038/1‑35 (MQ=255)
                       cccgacagcgaCTGGGGCATCTGCGAAGTTAATCt             <  1:4076519‑M2/24‑1 (MQ=255)
                       aCCGACAGCGACTGGGGCATCTGCGAAGTTAACCt             >  1:13686081/1‑35 (MQ=255)
                       aCCGACAGCGACTGGGGCATCTGCGAAGTTAACCt             >  1:19131070/1‑35 (MQ=255)
                       aCCGACAGCGACTGGGGCATCTGCGAAGTTAACCt             >  1:682976/1‑35 (MQ=255)
                        ccgccagcgaCTGGGGCATCTGCGAAGTTAACCTg            <  1:2040954‑M2/25‑1 (MQ=255)
                        ccgacagcgaCTGGGGCATCTGCGAAGTTAACCTg            <  1:283572‑M2/25‑1 (MQ=255)
                        ccgacagcgaCTGGGGCATCTGCGAAGTTAACCTg            >  1:6139652‑M2/11‑35 (MQ=255)
                        ccgacagcgaCTGGGGCATCTGCGAAGTTAACCTg            <  1:13641741‑M2/25‑1 (MQ=255)
                        ccgacagcgaCTGGGGCATCTGCGAAGTTAACCTg            >  1:18616039‑M2/11‑35 (MQ=255)
                        cagacagcgaCTGGGGCATCTGCGAAGTTAACCTg            <  1:7887687‑M2/25‑1 (MQ=255)
                         cgccagcgaCTGGGGCATCTGCGAAGTTAACCTGa           <  1:6750503‑M2/26‑1 (MQ=255)
                         cgacagcgaCTGGGGCATCTGCGAAGTTAACCTGa           >  1:11068150‑M2/10‑35 (MQ=255)
                         cgacagcgaCTGGGGCATCTGCGAAGTTAACCTGa           >  1:10462819‑M2/10‑35 (MQ=255)
                         cgacagcgaCTGGGGCATCTGCGAAGTTAACCTGa           >  1:8737902‑M2/10‑35 (MQ=255)
                         cgacagcgaCTGGGGCATCTGCGAAGTTAACCTGa           <  1:9071574‑M2/26‑1 (MQ=255)
                         cgacagcgaCTGGGGCATCTGCGAAGTTAACCTGa           >  1:9629643‑M2/10‑35 (MQ=255)
                          gacagcggCTGGGGCATCTGCGAAGTTAACCTGAt          <  1:5813243‑M2/27‑1 (MQ=255)
                          gacagcgaCTGGGGCATCTGCGAAGTTAACCTGAt          <  1:7061161‑M2/27‑1 (MQ=255)
                          gacagcgaCTGGGGCATCTGCGAAGTTAACCTGAt          <  1:6979392‑M2/27‑1 (MQ=255)
                          gacagcgaCTGGGGCATCTGCGAAGTTAACCTGAt          <  1:17276307‑M2/27‑1 (MQ=255)
                          gacagcgaCTGGGGCATCTGCGAAGTTAACCTGAt          <  1:19483399‑M2/27‑1 (MQ=255)
                           acagcgaCTGGGGCATCTGCGAAGTTAACCTGATg         >  1:16026546‑M2/8‑35 (MQ=255)
                           acagcgaCTGGGGCATCTGCGAAGTTAACCTGATg         >  1:18577186‑M2/8‑35 (MQ=255)
                           aCAGCGACTGGGTCATCTGTGAAGTTAACCTGATg         >  1:2024936/1‑35 (MQ=37)
                            cagcgaCTGGGGCATCTGCGAAGTTGACCTGATGc        >  1:17194130‑M2/7‑35 (MQ=255)
                            cagcgaCTGGGGCATCTGCGAAGTTAACCTGATGc        >  1:10964908‑M2/7‑35 (MQ=255)
                            cagcgaCTGGGGCATCTGCGAAGTTAACCTGATGc        <  1:10113770‑M2/29‑1 (MQ=255)
                            cagcgaCTGGGGCATCTGCGAAGTTAACCTGATGc        <  1:6167700‑M2/29‑1 (MQ=255)
                             agcgaCTGGGGCATCTGCGAAGTTAACCTGATGcc       >  1:2843641‑M2/6‑35 (MQ=255)
                             agcgaCTGGGGCATCTGCGAAGTTAACCTGATGcc       >  1:16682704‑M2/6‑35 (MQ=255)
                             agcgaCTGGGGCATCTGCGAAGTTAACCTGATGcc       >  1:14308570‑M2/6‑35 (MQ=255)
                             agcgaCTGGGGCATCTGCGAAGTTAACCTGATGcc       >  1:11755400‑M2/6‑35 (MQ=255)
                              gcgaCTGGGGCATCTGCGAAGTTAACCTGATGCCa      <  1:3655244‑M2/31‑1 (MQ=255)
                              gcgaCTGGGGCATCTGCGAAGTTAACCTGATGCCa      <  1:19236408‑M2/31‑1 (MQ=255)
                               cgaCTGGGGCATCTGCGAAGTTAACGTGATGCCAg     <  1:5096554‑M2/32‑1 (MQ=255)
                               cgaCTGGGGCATCTGCGAAGTTAACCTGATGCCAg     <  1:16794470‑M2/32‑1 (MQ=255)
                                gaCTGGGGCATCTGCGAAGTTAACCTGATGCCAgg    <  1:20540004‑M2/33‑1 (MQ=255)
                                gaCTGGGGCATCTGCGAAGTTAACCTGATGCCAgg    >  1:7949074‑M2/3‑35 (MQ=255)
                                gaCTGGGGCATCTGCGAAGTTAACCTGATGCCAgg    >  1:5329754‑M2/3‑35 (MQ=255)
                                gaCTGGGGCATCTGCGAAGTTAACCTGATGCCAgg    >  1:116778‑M2/3‑35 (MQ=255)
                                gaCTGGGGCATCTGCGAAGTTAACCTGATGCCAgg    >  1:2948459‑M2/3‑35 (MQ=255)
                                gaCTGGGGCATCTGCGAAGTTAACCTGATGCCAgg    >  1:12566317‑M2/3‑35 (MQ=255)
                                 aCTGGGGCATCTGCGAAGTTAACCTGATGCCAGGc   <  1:11161269‑M2/34‑1 (MQ=255)
                                 aCTGGGGCATCTGCGAAGTTAACCTGATGCCAGGc   >  1:11900254‑M2/2‑35 (MQ=255)
                                 aCTGGGGCATCTGCGAAGTTAACCTGATGCCAGGc   >  1:6832221‑M2/2‑35 (MQ=255)
                                 aCTGGGGCATCTGCGAAGTTAACCTGATGCCAGGc   >  1:9586683‑M2/2‑35 (MQ=255)
                                 aCTGGGGCATCTGCGAAGTTAACCTGATGCCAGGc   >  1:5373693‑M2/2‑35 (MQ=255)
                                  cTGGGGCATCTGCGAAGTTAACCTGATGCCAGGCa  <  1:10055035/35‑1 (MQ=255)
                                  cTGGGGCATCTGCGAAGTTAACCTGATGCCAGGCa  >  1:10151040/1‑35 (MQ=255)
                                  cTGGGGCATCTGCGAAGTTAACCTGATGCCAGGCa  <  1:6540555/35‑1 (MQ=255)
                                  cTGGGGCATCTGCGAAGTTAACCTGATGCCAGGCa  <  1:17387380/35‑1 (MQ=255)
                                  cTGGGGCATCTGCGAAGTTAACCTGATGCCAGGCa  >  1:2825006/1‑35 (MQ=255)
                                  |                                  
ATACCCATCATCTGCTGGAAAGCACCGACAGCGACTGGGGCATCTGCGAAGTTAACCTGATGCCAGGCA  >  REL606/4533936‑4534004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.