New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 547699NA (NA)48 (0.470) 30/48 NT NA noncoding (1/768 nt) IS1 repeat region
?REL606 557127 = NA (NA)coding (70/282 nt) ECB_00514 conserved hypothetical protein

ATACACTAAATCAGTAAGTTGGCAGCATCACCACCGAAACCATCACCATTGGCTTCAGTTACG  >  REL606/547668‑547730
                               |                               
atACACTAAATCAGTAAGTTGGCAGCATcaccacg                              >  1:11365908/1‑34 (MQ=17)
atACACTAAATCAGTAAGTTGGCAGCATCaccacc                              >  1:17445301/1‑35 (MQ=35)
   cacTAAATCAGTAAGTTGGCAGCATCACCACCGaa                           >  1:12314564/1‑35 (MQ=38)
           cAGTAAGTTGGCAGCATCACCACCGAAACCATCAc                   >  1:10370722/1‑35 (MQ=255)
                        gcaTCACCACCGAAACCATCACCATTGGCTTCAGt      >  1:3543552/1‑35 (MQ=255)
                            caacaccGAAACCATCACAATTGGCTTCAGTTACg  <  1:12604645/32‑1 (MQ=38)
                               |                               
ATACACTAAATCAGTAAGTTGGCAGCATCACCACCGAAACCATCACCATTGGCTTCAGTTACG  >  REL606/547668‑547730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.