New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1006225100 (0.970)9 (0.110) 3/38 NT 13.2% intergenic (‑149/+20) asnS/pncB asparaginyl‑tRNA synthetase/nicotinate phosphoribosyltransferase
?REL606 = 4210740 39 (0.480)intergenic (‑178/+75) yjbD/lysC hypothetical protein/aspartate kinase III

AGCGAAAGATTTCGGAATTAAAGGTAAAAAAAGGGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1006187‑1006225
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagccTGTACTCTGTTAACCAGCGTCTTTATCGGAGAAT  <  REL606/4210740‑4210707
                                                                         
AGCGAAAGATTTCGGAATTAAAGGTAAAAAAAGGG                                        >  1:2480086/1‑35
AGCGAAAGATTTCGGAATTAAAGGTAAAAAAAGGG                                        <  1:19501684/35‑1
AGCGAAAGATTTCGGAATTAAAGGTAAAAAAAGGG                                        <  1:4997820/35‑1
AGCGAAAGATTTCGGAATTAAAGGTAAAAAAAGGG                                        <  1:10094472/35‑1
 GCGAAAGATTTCGGAATTAAAGGTAAAAAAAGGGA                                       <  1:12198565/35‑1
 GCGAAAGATTTCGGAATTAAAGGTAAAAAAAGGGA                                       >  1:8588803/1‑35
 GCGAAAGATTTCGGAATTAAAGGTAAAAAAAGGGA                                       >  1:6287570/1‑35
 GCGAAAGATTTCGGAATTAAAGGTAAAAAAAGGGA                                       >  1:3880256/1‑35
  CGAAAGATTTCGGAATTAAAGGTAAAAAAAGGGAG                                      <  1:3238953/35‑1
  CGAAAGATTTCGGAATTAAAGGTAAAAAAAGGGAG                                      <  1:3446064/35‑1
  CGAAAGATTTCGGAATTAAAGGTAAAAAAAGGGAG                                      >  1:4366773/1‑35
   GAAAGATTTCGGAATTAAAGGTAAAAAAAGGGAGC                                     <  1:14801063/35‑1
    AAAGATTTCGGAATTAAAGGTAAAAAAAGGGAGCC                                    <  1:7177916/35‑1
    AAAGATTTCGGAATTAAAGGTAAAAAAAGGGAGCC                                    >  1:14249185/1‑35
    AAAGATTTCGGAATTAAAGGTAAAAAAAGGGAGCC                                    >  1:14901738/1‑35
    AAAGATTTCGGAATTAAAGGTAAAAAAAGGGAGCC                                    <  1:15847205/35‑1
    AAAGATTTCGGAATTAAAGGTAAAAAAAGGGAGCC                                    >  1:10640103/1‑35
                       catAAAAAAGGGAGCCTGTACTCTGTTAACCAGCG                 <  1:19766722/32‑1
                       aatAAAAAAGGGAGCCTGTACTCTGTTAACCAGCG                 <  1:9298909/32‑1
                        aAAAATAAGGGAGCCTGTACTCTGTTAACCAGCGT                <  1:6616218/34‑1
                         tAAAAAAGGGAGCCTGTACTCTGTTAACCAGCGTC               <  1:3441115/34‑1
                         AAAAAAAGGGAGCCTGTACTCTGTTAACCAGCGTC               <  1:8682196/35‑1
                         AAAAAAAGGGAGCCTGTACTCTGTTAACAAGCGTC               <  1:18343254/35‑1
                         AAAAAAACGGAGCCTGTACTCTGTTAACCAGCGTC               <  1:20259961/35‑1
                          AAAAAAGGGAGCCTGTACTCTGTTAACCAGCGTCT              <  1:1577614/35‑1
                           AAAAAGGGAGCCTGTACTCTGTTAACCAGCGTCTT             <  1:9575715/35‑1
                             AAAGGGAGCCTGTACTCTGTTAACAAGCGTCTTTA           <  1:4691922/35‑1
                             AAACGGAGCCTGTACTCTGTTAACCAGCGTCTTTA           <  1:8215575/35‑1
                             AAACGGAGCCTGTACTCTGTTAACCAGCGTCTTTA           <  1:7975074/35‑1
                              AAGGGAGCCTGTACTCTGTTAACCAGCGTCTTTAT          <  1:2476837/35‑1
                              AAGGGAGCCTGTACTCTGTTAACCAGCGTCTTTAT          <  1:5909420/35‑1
                               acGGAGCCTGTACTCTGTTAACCAGCGTCTTTATC         <  1:16570588/33‑1
                               AGGGAGCCTGTACTCTGTTAACCAGCGTCTTTATC         <  1:3835310/35‑1
                               AGGGAGCCTGTACTCTGTTAACCAGCGTCTTTATC         <  1:17729032/35‑1
                                GGGAGCCTGTACTCTGTTAACCAGCGTCTTTATCG        <  1:16451582/35‑1
                                GGGAGCCTGTACTCTGTTAACCAGCGTCTTTATCG        <  1:3895944/35‑1
                                 GGAGCCTGTACTCTGTTAACCAGCGTCTTTATCGG       <  1:3389132/35‑1
                                 GGAGCCTGTACTCTGTTAACCAGCGTCTTTATCGG       <  1:1810542/35‑1
                                  GAGCCTGTACTCTGTTAACCAGCGTCTTTATCGGA      >  1:1339657/1‑35
                                  GAGCCTGTACTCTGTTAACCAGCGTCTTTATCGGA      >  1:6121388/1‑35
                                  GAGCCTGTACTCTGTTAACCAGCGTCTTTATCGGA      <  1:20027064/35‑1
                                  GAGCCTGTACTCTGTTAACCAGCGTCTTTATCGGA      <  1:20105244/35‑1
                                   AGCCTGTACTCTGTTAACCAGCGTCTTTATCGGAG     >  1:4288182/1‑35
                                   AGCCTGTACTCTGTTAACCAGCGTCTTTATCGGAG     <  1:19346280/35‑1
                                   AGCCTGTACTCTGTTAACCAGCGTCTTTATCGGAG     <  1:19617444/35‑1
                                   AGCCTGTACTCTGTTAACCAGCGTCTTTATCGGAG     <  1:14378670/35‑1
                                    GCCTGTACTCTGTTAACCAGCGTCTTTATCGGAGA    >  1:12960637/1‑35
                                    GCCTGTACTCTGTTAACCAGCGTCTTTATCGGAGA    <  1:71416/35‑1
                                    GCCTGTACTCTGTTAACCAGCGTCTTTATCGGAGA    <  1:14335411/35‑1
                                    GCCTGTACTCTGTTAACCAGCGTCTTTATCGGAGA    >  1:6466349/1‑35
                                    GCCTGTACTCTGTTAACCAGCGTCTTTATCGGAGA    >  1:19429630/1‑35
                                     CCTGTACTCTGTTAACCAGCGTCTTTATCGGAGAA   <  1:9069847/35‑1
                                     CCTGTACTCTGTTAACCAGCGTCTTTATCGGAGAA   <  1:10273163/35‑1
                                      CTGTACTCTGTTAACCAGCGTCTTTATCGGAGAAT  <  1:6600453/35‑1
                                      CTGTACTCTGTTAACCAGCGTCTTTATCGGAGAAT  <  1:6807745/35‑1
                                      CTGTACTCTGTTAACCAGCGTCTTTATCGGAGAAT  <  1:1988898/35‑1
                                      CTGTACTCTGTTAACCAGCGTCTTTATCGGAGAAT  >  1:297255/1‑35
                                      CTGTACTCTGTTAACCAGCGTCTTTATCGGAGAAT  <  1:4870847/35‑1
                                      CTGTACTCTGTTAACCAGCGTCTTTATCGGAGAAT  >  1:12677261/1‑35
                                      CTGTACTCTGTTAACCAGCGTCTTTATCGGAGAAT  <  1:9037953/35‑1
                                      CTGTACTCTGTTAACCAGCGTCTTTATCGGAGAAT  <  1:11310259/35‑1
                                      CTGTACTCTGTTAACCAGCGTCTTTATCGGAGAAT  <  1:9535666/35‑1
                                                                         
AGCGAAAGATTTCGGAATTAAAGGTAAAAAAAGGGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1006187‑1006225
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagccTGTACTCTGTTAACCAGCGTCTTTATCGGAGAAT  <  REL606/4210740‑4210707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.