New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1004939 =65 (0.630)15 (0.180) 5/40 NT 19.2% coding (1138/1401 nt) asnS asparaginyl‑tRNA synthetase
?REL606 1339539 = 72 (0.840)coding (610/1170 nt) yciM hypothetical protein

TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1004976‑1004939
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctaAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC  >  REL606/1339539‑1339572
                                                                        
TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGG                                       <  1:10704247/35‑1
TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGG                                       <  1:10706022/35‑1
TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGG                                       >  1:10909440/1‑35
TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGG                                       >  1:741304/1‑35
TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGG                                       >  1:4962216/1‑35
 ATGCGCCTTAACGAAGACTGTAAAACCGTTGCGGC                                      >  1:10512764/1‑35
 ATGCGCCTTAACGAAGACGGTAAAACCGTTGCGGC                                      >  1:973119/1‑35
 ATGCGCCTTAACGAAGACGGTAAAACCGTTGCGGC                                      <  1:2386416/35‑1
 ATGCGCCTTAACGAAGACGGTAAAACCGTTGCGGC                                      >  1:14464911/1‑35
 ATGCGCCTTAACGAAGACGGTAAAACCGTTGCGGC                                      >  1:12607364/1‑35
  TGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCT                                     <  1:8521453/35‑1
  TGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCT                                     <  1:13216883/35‑1
  TGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCT                                     <  1:4074596/35‑1
  TGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCT                                     <  1:2615628/35‑1
  TGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCT                                     >  1:1574971/1‑35
  TGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCT                                     >  1:2517343/1‑35
   GCGCCTTAACGAAGACGGTAAAACCGTTGCGGCTA                                    >  1:7646794/1‑35
   GCGCCTTAACGAAGACGGTAAAACCGTTGCGGCTA                                    >  1:3330763/1‑35
   GCGCCTTAACGAAGACGGTAAAACCGTTGCGGCTA                                    >  1:2874276/1‑35
   GCGCCTTAACGAAGACGGTAAAACCGTTGCGGCTA                                    >  1:18125815/1‑35
    CGCCTTAACGAAGACGGTAAAACCGTTGCGGCTAA                                   >  1:10920229/1‑35
    CGCCTTAACGAAGACGGTAAAACCGTTGCGGCTAA                                   >  1:18870936/1‑35
    CGCCTTAACGAAGACGGTAAAACCGTTGCGGCTAA                                   >  1:12651748/1‑35
     GCCTTAACGAAGACTGTAAAACCGTTGCGGCTAAA                                  >  1:8482125/1‑35
     GCCTTAACGAAGACGGTAAAACCGTTGCGGCTAAA                                  >  1:17938708/1‑35
     GCCTTAACGAAGACGGTAAAACCGTTGCGGCTAAA                                  >  1:8093975/1‑35
     GCCTTAACGAAGACGGTAAAACCGTTGCGGCTAAA                                  >  1:5476019/1‑35
     GCCTTAACGAAGACGGTAAAACCGTTGCGGCTAAA                                  >  1:4295859/1‑35
      CCTTAACGAATACGGTAAAACCGTTGCGGCTAAAA                                 >  1:11400412/1‑35
      CCTTAACGAAGACGGTAAAACCGTTGCGGCTAAAA                                 >  1:12795527/1‑35
      CCTTAACGAAGACGGTAAAACCGTTGCGGCTAAAA                                 >  1:6918697/1‑35
      CCTTAACGAAGACGGTAAAACCGTTGCGGCTAAAA                                 >  1:4163616/1‑35
       CTTAACTAAGACGGTAAAACCGTTGCGGCTAAAAA                                >  1:11365122/1‑35
       CTTAACGAAGACGGTAAAACCGTTGCGGCTAAAAA                                >  1:2672908/1‑35
       CTTAACGAAGACGGTAAAACCGTTGCGGCTAAAAA                                >  1:1198533/1‑35
        TTAACGAAGACGGTAAAACCGTTGCGGCTAAAGAA                               >  1:1589813/1‑35
        TTAACGAAGACGGTAAAACCGTTGCGGCTAAAAAA                               >  1:910705/1‑35
         TAACGAAGACGGTAAAACCGTTGCGGCTAAAAAAA                              >  1:18681435/1‑35
         TAACGAAGACGGTAAAACCGTTGCGGCTAAAAAAA                              >  1:16008294/1‑35
         TAACGAAGACGGTAAAACCGTTGCGGCTAAAAAAA                              >  1:19717281/1‑35
          AACGAAGACGGTAAAACCGTTGCGGCTAAAAAAgg                             >  1:10963992/1‑33
          AACGAAGACGGTAAAACCGTTGCGGCTAAAAAAgg                             >  1:13030755/1‑33
          AACGAAGACGGTAAAACCGTTGCGGCTAAAAAAAa                             >  1:1840674/1‑34
          AACGAAGACGGTAAAACCGTTGCGGCTAAAAAAAa                             >  1:20144081/1‑34
           ACGAAGACGGTAAAACCGTTGCGGCTAAAAAAAGG                            >  1:6168927/1‑35
            CGAAGACGGTAAAACCGTTGCGGCTAAAAAAGGGG                           >  1:2974395/1‑35
            CGAAGACGGTAAAACCGTTGCGGCTAAAAAAAGGG                           >  1:7652799/1‑35
             GAAGACGGTAAAACCGTTGCGGCTAAAAAAAGGGG                          >  1:18545788/1‑35
             GAAGACGGTAAAACCGTTGCGGCTAAAAAAAAGGG                          >  1:5460775/1‑35
              AAGACGGTAAAACCGTTGCGGCTAAAAAAGGGGGg                         >  1:8138933/1‑34
              AAGACGGTAAAACCGTTGCGGCTAAAAAAAGGGGt                         >  1:18316337/1‑34
               AGACGGTAAAACCGTTGCGGCTAAAAAAAGGGGtg                        >  1:2261549/1‑33
                GACGGTAAAACCGTTGCGGCTAAAAAAAGGGGGGG                       >  1:3366226/1‑35
                GACGGTAAAACCGTTGCGGCTAAAAAAAGGGGGGG                       >  1:7033477/1‑35
                                  GCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCG     >  1:8488139/1‑35
                                  GCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCG     >  1:8891801/1‑35
                                  GCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCG     <  1:6359075/35‑1
                                  GCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCG     >  1:20230753/1‑35
                                   CTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCGC    >  1:8407172/1‑35
                                   CTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCGC    <  1:16897670/35‑1
                                   CTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCGC    >  1:17417505/1‑35
                                     AAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC  >  1:4638167/1‑35
                                     AAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC  <  1:13470382/35‑1
                                     AAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC  >  1:1569094/1‑35
                                     AAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC  <  1:2656777/35‑1
                                     AAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC  <  1:15745319/35‑1
                                                                        
TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1004976‑1004939
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctaAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC  >  REL606/1339539‑1339572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.