New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 42237147 (1.430)9 (0.100) 4/42 NT 5.9% pseudogene (740/885 nt) caiB crotonobetainyl‑CoA:carnitineCoA‑transferase; b0038_1
?REL606 2742547 = 160 (1.780)coding (1555/1827 nt) hycC NADH dehydrogenase subunit N

Only 100 of 307 total aligned reads displayed.

GAACGCGATGGCAAACGATCGCCTTTGCAAATCGCCATAATGATGAATGGCAGCAGCGGGCAGGCAATC  >  REL606/2742513‑2742581
                                  |                                  
gAACGTGATGGCAAACGATCGCCTTTGCAAATCGc                                    >  1:2733043/1‑35 (MQ=255)
gAACGCGATGGCAAACGATCGCCTTTGCAAATCGc                                    >  1:15979221/1‑35 (MQ=255)
gAACGCGATGGCAAACGATCGCCTTTGCAAATCGc                                    >  1:1527031/1‑35 (MQ=255)
gAACGCGATGGCAAACGATCGCCTTTGCAAATCGc                                    <  1:19465289/35‑1 (MQ=255)
 aaCGCGATTGCAAACGATCGCCTTTGCAAATCGcc                                   >  1:7554125/1‑35 (MQ=255)
 aaCGCGATGGCAAACGATCGCCTTTGCAAATCGcc                                   >  1:10936420/1‑35 (MQ=255)
 aaCGCGATGGCAAACGATCGCCTTTGCAAATCGcc                                   <  1:13078480/35‑1 (MQ=255)
  aCGCGATGGCAAACGATCGCCTTTGCAAATCGCCa                                  >  1:11173734/1‑35 (MQ=255)
  aCGCGATGGCAAACGATCGCCTTTGCAAATCGCCa                                  <  1:8211798/35‑1 (MQ=255)
  aCGCGATGGCAAACGATCGCCTTTGCAAATCGCCa                                  <  1:6298489/35‑1 (MQ=255)
  aCGCGATGGCAAACGATCGCCTTTGCAAATCGCCa                                  <  1:2418107/35‑1 (MQ=255)
   cgcgATGGCAAACGATCGCCTTTGCAAATCGCCAt                                 >  1:6608663/1‑35 (MQ=255)
    ncgATGGCAAACGATCGCCTTTGCAAATCGCCATa                                >  1:20597052/2‑35 (MQ=255)
     cgATGGCAAACGATCGCCTTTGCAAATCGCCATaa                               >  1:4352670/1‑35 (MQ=255)
     cgATGGCAAACGATCGCCTTTGCAAATCGCCATaa                               >  1:3080645/1‑35 (MQ=255)
     cgATGGCAAACGATCGCCTTTGCAAATCGCCATaa                               >  1:7030295/1‑35 (MQ=255)
      gATGGCAAACGATCGCCTTTGCAAATCGCCATGat                              >  1:4750525/1‑35 (MQ=255)
      gATGGCAAACGATCGCCTTTGCAAATCGCCATAat                              >  1:20186387/1‑35 (MQ=255)
      gATGGCAAACGATCGCCTTTGCAAATCGCCATAat                              >  1:17984804/1‑35 (MQ=255)
      gATGGCAAACGATCGCCTTTGCAAATCGCCATAat                              >  1:9493633/1‑35 (MQ=255)
        tGGCAAACGATCGCCTTTGCAAATCGCCATAatga                            >  1:9265415/1‑35 (MQ=255)
         ggCAAACGATCGCCTTTGCAAATCGCCATAatgat                           >  1:16159031/1‑35 (MQ=255)
         ggCAAACGATCGCCTTTGCAAATCGCCATAatgat                           >  1:6115117/1‑35 (MQ=255)
         ggCAAACGATCGCCTTTGCAAATCGCCATAatgat                           >  1:5043813/1‑35 (MQ=255)
          gCAAACGATCGCCTTTTCAAATCGCCATAatgatg                          >  1:4048050/1‑35 (MQ=255)
          gCAAACGATCGCCTTTGCAAATCGCCATAatgatg                          >  1:12657169/1‑35 (MQ=255)
          gCAAACGATCGCCTTTGCAAATCGCCATAatgatg                          >  1:16846425/1‑35 (MQ=255)
           cAAACGATCGCCTTTGCAAATCGCCATAAtgatga                         >  1:1785280/1‑35 (MQ=255)
           cAAACGATCGCCTTTGCAAATCGCCATAAtgatga                         >  1:8524201/1‑35 (MQ=255)
           cAAACGATCGCCTTTGCAAATCGCCATAAtgatga                         >  1:18321477/1‑35 (MQ=255)
            aaaCGATCGCCTTTGCAAATCGCCATAATGATGaa                        >  1:4773935/1‑35 (MQ=255)
            aaaCGATCGCCTTTGCAAATCGCCATAATGATGaa                        >  1:6750378/1‑35 (MQ=255)
            aaaCGATCGCCTTTGCAAATCGCCATAATGATGaa                        >  1:7751051/1‑35 (MQ=255)
            aaaCGATCGCCTTTGCAAATCGCCATAATGATGaa                        >  1:18831941/1‑35 (MQ=255)
             aaCGATCGCCTTTGCAAATCGCCATAATGATGAAt                       >  1:15800673/1‑35 (MQ=255)
             aaCGATCGCCTTTGCAAATCGCCATAATGATGAAt                       >  1:7844575/1‑35 (MQ=255)
             aaCGATCGCCTTTGCAAATCGCCATAATGATGAAt                       >  1:16678382/1‑35 (MQ=255)
              aCGATCGCCTTTGCAAATCGCCATAATGATGAATg                      >  1:12226417/1‑35 (MQ=255)
              aCGATCGCCTTTGCAAATCGCCATAATGATGAATg                      >  1:10377885/1‑35 (MQ=255)
              aCGATCGCCTTTGCAAATCGCCATAATGATGAATg                      >  1:10020279/1‑35 (MQ=255)
               cGATCGCCTTTGCAAATCGCCATAATGATGAAttg                     >  1:1169971/1‑33 (MQ=255)
               cGATCGCCTTTGCAAATCGCCATAATGATGAATgg                     >  1:16887157/1‑35 (MQ=255)
               cGATCGCCTTTGCAAATCGCCATAATGATGAATgg                     >  1:12840819/1‑35 (MQ=255)
               cGATCGCCTTTGCAAATCGCCATAATGATGAATgg                     >  1:19813126/1‑35 (MQ=255)
                gATCGCCTTTGCAAATCGCCATAATGATGAATGgc                    >  1:3553590/1‑35 (MQ=255)
                gATCGCCTTTGCAAATCGCCATAATGATGAATGgc                    >  1:20471614/1‑35 (MQ=255)
                gATCGCCTTTGCAAATCGCCATAATGATGAATGgc                    >  1:19403322/1‑35 (MQ=255)
                gATCGCCTTTACAAATCGCCATAATGATGAATGgc                    >  1:3681599/1‑35 (MQ=255)
                 gtCGCTTTTAAAATTCGCCATAATGATGAATGgca                   <  1:1873697/34‑1 (MQ=16)
                 aTCGCCTTTGCAAATCGCCATAATGATGAATGgca                   >  1:4001955/1‑35 (MQ=255)
                  tCGCCTTTGCAAATCGCCATAATGATGAATGgcag                  >  1:9675104/1‑35 (MQ=255)
                  tCGCCTTTGCAAATCGCCATAATGATGAATGgcag                  >  1:15603374/1‑35 (MQ=255)
                  tCGCCTTTGCAAATCGCCATAATGATGAATGgcag                  >  1:13495435/1‑35 (MQ=255)
                   cGCCTTTGCAAATCGCCATAATGATGAATGgcagc                 >  1:2548475/1‑35 (MQ=255)
                    gCCTTTTAAATTCGCCATAATGATGAATGgcagca                <  1:19737960/35‑1 (MQ=21)
                    gCCTTTGCAAATCGCCATAATGATGAATTgcagca                >  1:14634873/1‑35 (MQ=255)
                    gCCTTTGCAAATCGCCATAATGATGAATGgcagca                >  1:14474270/1‑35 (MQ=255)
                    gCCTTTGCAAATCGCCATAATGATGAATGgcagca                >  1:16475547/1‑35 (MQ=255)
                     ccTTTGCAAATCGCCATAATGATGAATGGcagcag               >  1:20312863/1‑35 (MQ=255)
                     ccTTTGCAAATCGCCATATGATGAATGGCagcagc              >  1:157271/1‑35 (MQ=37)
                     ccTTTGAAATTCGCCATAATGATGAATGGcagcag               <  1:12464355/35‑1 (MQ=37)
                     ccTGTGAAATTCGCCATAATGATGAATGGcagcag               <  1:10518497/35‑1 (MQ=25)
                      ttttgaaattcgCCATAATGATGAATGGCagcagc              <  1:10732423‑M2/23‑1 (MQ=255)
                      cTTTGCAAATCGCCATAATGATGAATGGCagcagc              >  1:6502635/1‑35 (MQ=255)
                      cTTTGCAAATCGCCATAATGATGAATGGCagcagc              >  1:14062809/1‑35 (MQ=255)
                      cTTTGCAAATCGCCATAATGATGAATGGCagcagc              >  1:17274723/1‑35 (MQ=255)
                      cTTTGCAAATCGCCATAATGATGAATGGCagcagc              >  1:11539143/1‑35 (MQ=255)
                       tttgaaattcgCCATAATGATGAATGGCAGCAGCg             <  1:16193461‑M2/24‑1 (MQ=255)
                       tttGTAAATCGCCATAATGATGAATGGCAGCAGCg             <  1:4599310/35‑1 (MQ=255)
                       tttGCAAATCGCCATAATGATGAATGTCAGCAGCg             >  1:17653527/1‑35 (MQ=255)
                       tttGCAAATCGCCATAATGATGAATGGCAGCAGCg             >  1:12566730/1‑35 (MQ=255)
                       tttGCAAATCGCCATAATGATGAATGGCAGCAGCg             >  1:7577729/1‑35 (MQ=255)
                       tttGCAAATCGCCATAATGATGAATGGCAGCAGCg             >  1:664000/1‑35 (MQ=255)
                       tttGCAAATCGCCATAATGATGAATGGCAGCAGCg             >  1:3438340/1‑35 (MQ=255)
                         tGCAAATCGCCATAATGATGAATGGCAGCAGCggg           >  1:15165058/1‑35 (MQ=255)
                          gCAAATCGCCATAATGATGAATGGCAGCAGCGtgc          >  1:2598338/1‑35 (MQ=255)
                          gCAAATCGCCATAATGATGAATGGCAGCAGCGggc          >  1:13863767/1‑35 (MQ=255)
                           cAAATCGCCATAATGATGAATGGCAGCAGCGggca         >  1:13157216/1‑35 (MQ=255)
                            aattcgCCATAATGATGAATGGCAGCAGCGggcag        <  1:3874168‑M2/29‑1 (MQ=255)
                            aaaTCGCCATAATGATGAATGGCAGCAGCGggcag        >  1:8124501/1‑35 (MQ=255)
                             attcgCCATAATGATGAATGGCAGCAGCGggcagg       <  1:16439675‑M2/30‑1 (MQ=255)
                             attcgCCATAATGATGAATGGCAGCAGCGggcagg       <  1:15013642‑M2/30‑1 (MQ=255)
                             aaTCGCCATAATGATGAATGGCAGGAGCGgggagg       >  1:18642373/1‑35 (MQ=37)
                             aaTCGCCATAATGATGAATGGCAGCAGCGggcagg       >  1:12069588/1‑35 (MQ=255)
                               tcgCCATAATGATGAATGGCAGCAGCGggcaggca     <  1:11289865‑M2/32‑1 (MQ=255)
                               tcgCCATAATGATGAATGGCAGCAGCGggcaggca     >  1:8424072‑M2/4‑35 (MQ=255)
                               tCGCCATAATGATGAATGGCAGCCGCGgggaggca     >  1:5810519/1‑35 (MQ=37)
                                cgCCATAATGATGAATGGCAGCAGCGGGGAGGCaa    >  1:17014804‑M2/3‑35 (MQ=255)
                                cgCCATAATGATGAATGGCAGCAGCGGGCAGGCaa    >  1:2906942‑M2/3‑35 (MQ=255)
                                cgCCATAATGATGAATGGCAGCAGCGGGCAGGCaa    <  1:16783929‑M2/33‑1 (MQ=255)
                                 gCCATAATGATGAATGGCAGCAGCGGGCAGGcaa  >  1:7369878‑M2/2‑34 (MQ=255)
                                 gCCATAATGATGAATGGCAGCAGCGGGCAGGGAAt   >  1:19025149‑M2/2‑35 (MQ=255)
                                 gCCATAATGATGAATGGCAGCAGCGGGCAGGCAAt   <  1:14199146‑M2/34‑1 (MQ=255)
                                 gCCATAATGATGAATGGCAGCAGCGGGCAGGCAAt   >  1:14541621‑M2/2‑35 (MQ=255)
                                 gCCATAATGATGAATGGCAGCAGCGGGCAGGCAAt   >  1:9026311‑M2/2‑35 (MQ=255)
                                 gCCATAATGATGAATGGCAGCAGCGGGCAGGCAAt   <  1:3221829‑M2/34‑1 (MQ=255)
                                 gCCATAATGATGAATGGCAGCAGCGGGCAGGCAAt   <  1:17450893‑M2/34‑1 (MQ=255)
                                 gCCATAATGACGAATGGCAGCAGCGGGCAGGCAAt   >  1:5451252‑M2/2‑35 (MQ=255)
                                  ccATAATGATGAATGGCAGCAGCGGGCAGGCAATc  <  1:12314421/35‑1 (MQ=255)
                                  ccATAATGATGAATGGCAGCAGCGGGCAGGCAATc  >  1:8757382/1‑35 (MQ=255)
                                  |                                  
GAACGCGATGGCAAACGATCGCCTTTGCAAATCGCCATAATGATGAATGGCAGCAGCGGGCAGGCAATC  >  REL606/2742513‑2742581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.