New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 107576568 (0.660)14 (0.170) 4/38 NT 15.8% coding (220/2547 nt) torA trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit
?REL606 = 3523984 95 (1.170)coding (128/714 nt) livF leucine/isoleucine/valine transporter subunit

Only 100 of 189 total aligned reads displayed.

ATCGCCGCATAACGTACCAAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTC  >  REL606/3523950‑3524018
                                  |                                  
aTCGCCGCATAACGTACCAAGCAAGGTGGTTTTcc                                    <  1:18541562/35‑1 (MQ=255)
aTCGCCGCATAACGTACCAAGCAAGGTGGTTTTcc                                    <  1:20024008/35‑1 (MQ=255)
aTCGCCGCATAACGTACCAAGCAAGGTGGTTTTcc                                    >  1:10210792/1‑35 (MQ=255)
aTCGCCGCATAACGTACCAAGCAAGGTGGTTTTcc                                    >  1:13115185/1‑35 (MQ=255)
 tCGCCGCATAACGTACCAAGCAAGGTGGTTTTCCc                                   >  1:1079538‑M2/1‑34 (MQ=255)
  cgccgcATAACGTACCAAGCAAGGTGGTTTTCCcc                                  <  1:19298804‑M2/35‑3 (MQ=255)
  cgccgcATAACGTACCAAGCAAGGTGGTTTTCCcc                                  >  1:7996605‑M2/1‑33 (MQ=255)
   gccgcATAACGTACCAAGCAAGGTGGGTTTCCccg                                 <  1:7495771‑M2/35‑4 (MQ=255)
     cgcATAACGTACCAAGCAAGGTGGTTTTCCccgcc                               <  1:15388601‑M2/35‑6 (MQ=255)
     cgcATAACGTACCAAGCAAGGTGGTTTTCCccgcc                               <  1:4974025‑M2/35‑6 (MQ=255)
     cgcATAACGTACCAAGCAAGGTGGTTTTCCccgcc                               <  1:6543526‑M2/35‑6 (MQ=255)
     cgcATAACGTACCAAGCAAGGTGGTTTTCCccgcc                               >  1:9651681‑M2/1‑30 (MQ=255)
      gcATAACGTACCAAGCAAGGTGGTTTTccccgccc                              >  1:10354078/1‑35 (MQ=255)
      gcATAACGTACCAAGCAAGGTGGTTTTccccgccc                              <  1:6264114/35‑1 (MQ=255)
      gcATAACGTACCAAGCAAGGTGGTTTTccccgccc                              <  1:13032765/35‑1 (MQ=255)
      gcATAACGTACCAAGCAAGGTGGTTTTccccgccc                              >  1:16823875/1‑35 (MQ=255)
      gcATAACGTACCAAGCAAGGTGGTTTTccccgccc                              <  1:10113105/35‑1 (MQ=255)
      gcATAACGTACCAAGCAAGGTGGTTTTccccgccc                              <  1:7958474/35‑1 (MQ=255)
      gcATAACGTACCAAGCAAGGTGGTTTTccccgccc                              <  1:6761729/35‑1 (MQ=255)
       taTAACGTACCAAGCAAGGTGGTTTTccccgcccc                             <  1:240169/34‑1 (MQ=255)
       cATAACGTACCAAGCAAGGTGGTTTTccccgcccc                             <  1:12460861/35‑1 (MQ=255)
       cATAACGTACCAAGCAAGGTGGTTTTccccgcccc                             <  1:14854291/35‑1 (MQ=255)
         tAACGTACCAAGCAAGGTGGTTTTCCCCGCCCCGt                           <  1:11888500/35‑1 (MQ=255)
         tAACGTACCAAGCAAGGTGGTTTTCCCCGCCCCGt                           <  1:7256058/35‑1 (MQ=255)
         tAACGTACCAAGCAAGGTGGTTTTCCCCGCCCCGt                           >  1:10005208/1‑35 (MQ=255)
          aaagTACCAAGCAAGGTGGTTTTCCCCGCCCCGtt                          <  1:2165948/32‑1 (MQ=255)
          aaCGTACCAAGCAAGGTGGTTTTCCCCGCCCCGtt                          >  1:13530688/1‑35 (MQ=255)
          aaCGTACCAAGCAAGGTGGTTTTCCCCGCCCCGtt                          <  1:13902943/35‑1 (MQ=255)
          aaCGTACCAAGCAAGGTGGTTTTCCCCGCCCCGtt                          <  1:18293553/35‑1 (MQ=255)
          aaCGTACCAAGCAAGGTGGGTTTCCCCGCCCCGtt                          >  1:15589236/1‑35 (MQ=255)
            cGTACCAAGCAAGGTGGTTTTCCCCGCCCCGTTcg                        <  1:8721011/35‑1 (MQ=255)
            cGTACCAAGCAAGGTGGTTTTCCCCGCCCCGTTcg                        <  1:14799550/35‑1 (MQ=255)
            cGTACCAAGCAAGGTGGTTTTCCCCGCCCCGTTcg                        >  1:7641101/1‑35 (MQ=255)
            cGTACCAAGCAAGGTGGGTTTCCCCGCCCCGttag                        >  1:15287620/1‑33 (MQ=37)
             gTACCAAGCAAGGTGGTTTTCCCCGCCCCGTTcgc                       <  1:17885046/35‑1 (MQ=255)
             gTACCAAGCAAGGTGGTTTTCCCCGCCCCGTTcgc                       <  1:13368239/35‑1 (MQ=255)
             gTACCAAGCAAGGTGGTTTTCCCCGCCCCGTTcgc                       >  1:11651066/1‑35 (MQ=255)
             gTACCAAGCAAGGTGGTTTTCCCCGCCCCGTTcgc                       >  1:12638818/1‑35 (MQ=255)
             gTACCAAGCAAGGTGGTTTTCCCCGCCCAGATcgg                       >  1:2026898/1‑34 (MQ=25)
              tACCAAGCAAGGTGGTTTTCCCCGCCCCGTTcgcg                      >  1:5845489/1‑35 (MQ=255)
              tACCAAGCAAGGTGGTTTTCCCCGCCCCGTTcgcg                      >  1:3990559/1‑35 (MQ=255)
              tACCAAGCAAGGTGGTTTTCCCCGCCCCGTTcgcg                      >  1:11464085/1‑35 (MQ=255)
              tACAAAGCAAGGTGGTTTTCCCCGCCCCGTTcgcg                      <  1:6284152/35‑1 (MQ=255)
               aCCAAGCAAGGTGGTTTTCCCCGCCCCGTTCgcgc                     <  1:12517575/35‑1 (MQ=255)
               aCCAAGCAAGGTGGTTTTCCCCGCCCCGTTCgcgc                     >  1:14654698/1‑35 (MQ=255)
                ccAAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGcc                    >  1:16622681/1‑35 (MQ=255)
                ccAAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGcc                    >  1:14366812/1‑35 (MQ=255)
                ccAAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGcc                    >  1:2655466/1‑35 (MQ=255)
                ccAAGCAAGGTGGGTTTCCCCGCCCCGTTCGCGcc                    >  1:19755287/1‑35 (MQ=255)
                  aagcaagGTGGTTTTCCCCGCCCCGTTCGCTCCaa                  >  1:2040588/1‑35 (MQ=255)
                  aagcaagGTGGTTTTCCCCGCCCCGTTCGCGCTaa                  >  1:8071154/1‑35 (MQ=255)
                  aagcaagGTGGTTTTCCCCGCCCCGTTCGCGCCaa                  >  1:10004804/1‑35 (MQ=255)
                  aagcaagGTGGTTTTCCCCGCCCCGTTCGCGCCaa                  >  1:10629454/1‑35 (MQ=255)
                   agcaagGTGGTTTTCCCCGCCCCGTTCGCGCCAAt                 >  1:4641940/1‑35 (MQ=255)
                   agcaagGTGGTTTTCCCCGCCCCGTTCGCGCCAAt                 <  1:8497394/35‑1 (MQ=255)
                   agcaagGTGGTTTTCCCCGCACCGTTCGCGCCAAt                 <  1:3179962/35‑1 (MQ=255)
                   agcaagGTGGCTTTCCCCGCCCCGTTCGCGCCAAt                 >  1:17631380/1‑35 (MQ=255)
                    gcaagGTGGTTTTCCCCGCCCCGTTCGCGCCAATc                <  1:4615269/35‑1 (MQ=255)
                    gcaagGTGGTTTTCCCCGCCCCGTTCGCGCCAATc                <  1:4255492/35‑1 (MQ=255)
                     caagGTGGTTTTCCCCGCCCCGTTCGCGCCAATCa               <  1:1745605/35‑1 (MQ=255)
                     caagGTGGTTTTCCCCGCCCCGTTCGCGCCAATCa               <  1:16302411/35‑1 (MQ=255)
                      aagGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAg              >  1:4405096/1‑35 (MQ=255)
                      aagGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAg              >  1:10327134/1‑35 (MQ=255)
                       agGTGGTTTTCCCAGCCCCGTTCGCGCCAATCAGc             <  1:10832704/35‑1 (MQ=255)
                        ggtggtTTTCCCCGCCCCGTTCGCGCCAATCAGCg            >  1:2916080/1‑35 (MQ=255)
                        ggtggtTTTCCCCGCCCCGTTCGCGCCAATCAGCg            <  1:3772613/35‑1 (MQ=255)
                         gttgtTTTCCCCGCCCCGTTCGCTCCAATCAGCGt           >  1:15263387/4‑35 (MQ=37)
                         gtggtTTTCCCCGCCCCGTTCGCGCCAATCAGCGt           >  1:14351399/1‑35 (MQ=255)
                         gtggtTTTCCCCGCCCCGTTCGCGCCAATCAGCGt           >  1:19902258/1‑35 (MQ=255)
                         gtggtTTTCCCCGCCCCGTTCGCGCCAATCAGCGn           <  1:3578267/35‑1 (MQ=255)
                         gtggtTATCCCCGCCCCGTTCGCGCCAATCAGCGt           <  1:16412417/35‑1 (MQ=255)
                         acggtttTCCccgccacaaagcgaccatccttcac           >  1:5964022‑M2/3‑10 (MQ=255)
                          tggtTTTCCccgccacaaagcgaccatccttcacc          >  1:4285141‑M2/1‑9 (MQ=255)
                          tggtTTTCCCCGCCCCGTTCGCGCCAATCAGCTTg          >  1:14579286/1‑35 (MQ=255)
                          tggtTTTCCCCGCCCCGTTCGCGCCAATCAGCGTg          >  1:5480930/1‑35 (MQ=255)
                          tggtTTTCCCCGCCCCGTTCGCGCCAATCAGCGTg          >  1:10548264/1‑35 (MQ=255)
                          tggtTTTCCCCGCCCCGTTCGCGCCAATCAGCGTg          <  1:8220564/35‑1 (MQ=255)
                          ccgtttTCCccgccacaaagcgaccatccttcacc          >  1:5167232‑M2/3‑9 (MQ=255)
                           ggtTTTCGccgccacaaagcgaccatccttcaccg         >  1:14402930‑M2/1‑8 (MQ=255)
                           ggtTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGa         <  1:5671849/35‑1 (MQ=255)
                           ggtTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGa         <  1:11705758/35‑1 (MQ=255)
                           ctgtttccccgccacaaagcgaccatccttcaccg         >  1:7817771‑M2/4‑8 (MQ=255)
                           cgttTTCCccgccacaaagcgaccatccttcaccg         >  1:15327233‑M2/2‑8 (MQ=255)
                           cgttTTCCccgccacaaagcgaccatccttcaccg         >  1:8781299‑M2/2‑8 (MQ=255)
                            gtTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGAc        >  1:15873069/1‑35 (MQ=255)
                            ggtttccccgccacaaagcgaccatccttcaccgt        >  1:13771578‑M2/3‑7 (MQ=255)
                             ttttCCccgccacaaagcgaccatccttcaccgtc       >  1:5183576‑M2/1‑6 (MQ=255)
                             ttttCCccgccacaaagcgaccatccttcaccgtc       >  1:11190354‑M2/1‑6 (MQ=255)
                             ttttCCCCGCCCCGTTCGCGCCAATCAGCGTGACa       >  1:11660142/1‑35 (MQ=255)
                             ttttCCCCGCCCCGTTCGCGCCAATCAGCGTGACa       >  1:19421287/1‑35 (MQ=255)
                             tttcCCccgccacaaagcgaccatccttcaccgtc       >  1:904461‑M2/1‑6 (MQ=255)
                              tttCCCCGCCCCGTTCGCGCCAATCAGCGTGACaa      <  1:9892964/35‑1 (MQ=255)
                              tttCCCCGCCCCGTTCGCGCCAATCAGCGTGACaa      <  1:12385997/35‑1 (MQ=255)
                               ttCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAt     <  1:17476973/35‑1 (MQ=255)
                                tCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtc    <  1:10437776/35‑1 (MQ=255)
                                tCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtc    <  1:16808477/35‑1 (MQ=255)
                                 ccccgccccgTTCGCGCCAATCAGCGTGACAAtct   <  1:2888775/35‑1 (MQ=255)
                                 ccccgccccgTTCGCGCCAATCAGCGTGACAAtct   <  1:1976417/35‑1 (MQ=255)
                                  cccgccccgTTCGCGCCAATCAGCGTGACAAtctc  <  1:18986594/35‑1 (MQ=255)
                                  cccgccacaaagcgaccatccttcaccgtcgcgcg  >  1:800654‑M2/1‑1 (MQ=255)
                                  |                                  
ATCGCCGCATAACGTACCAAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTC  >  REL606/3523950‑3524018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.