New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 929308 = | 57 (0.550) | 8 (0.120) | 3/32 | NT | 13.8% | coding (1214/1653 nt) | hcp | hydroxylamine reductase |
? | REL606 | = 3040633 | 62 (0.910) | coding (654/810 nt) | pppA | bifunctional prepilin leader peptidase/ methylase |
Only 100 of 235 total aligned reads displayed.
TTAAAGCAACGTTGGGCAGTGATAACGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGTAATACATCGC > REL606/3040599‑3040667 | ttAAAGCAACGTTGGGCAGTGATAACGCCcccacc > 1:20233634/1‑35 (MQ=255) ttAAAGCAACGTTGGGCAGTGATAACGCCcccacc > 1:550180/1‑35 (MQ=255) ttAAAGCAACGTTGGGCAGTGATAACGCCcccacc < 1:2938540/35‑1 (MQ=255) tAAAGCAACGTTGGGCAGTGATAACGCCCCCACCC > 1:3109155‑M1/1‑35 (MQ=255) aaGCAACGTTGGGCAGTGATAACGCCCCCACCCAG < 1:17517174‑M1/35‑1 (MQ=255) aaGCAACGTTGGGCAGTGATAACGCCCCCACCCAG > 1:6497818‑M1/1‑35 (MQ=255) aGCAACGTTGGGCAGTGATAACGCCCCCACCCAGC < 1:8659895‑M1/35‑1 (MQ=255) aGCAACGTTGGGCAGTGATAACGCCCCCACCCAGC > 1:10187558‑M1/1‑35 (MQ=255) aGCAACGTGGGGCAGTGATAACGCCCCCACCCAGC < 1:14588107‑M1/35‑1 (MQ=255) gCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC > 1:16538447‑M1/1‑35 (MQ=255) gCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC < 1:15549434‑M1/35‑1 (MQ=255) gCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC < 1:3066035‑M1/35‑1 (MQ=255) cAACGTTGGGCAGTGATAACGCCCCCACCCAGCCA > 1:37542‑M1/1‑35 (MQ=255) aaCGTTGGGCAGTGATAACGCCCCCACCcagccac < 1:8158929‑M2/35‑8 (MQ=255) aCGTTGGGCAGTTATAACGCCCCCACCcagccacc < 1:15844783‑M2/35‑9 (MQ=255) aCGTTGGGCAGTGATAACGCCCCCACCcagccacc < 1:14141979‑M2/35‑9 (MQ=255) cGTTGGGCAGTGATAACGCCCGCACCCAGCCACCt < 1:11909411/35‑1 (MQ=255) cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt < 1:16069012/35‑1 (MQ=255) cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt < 1:18506625/35‑1 (MQ=255) cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt < 1:13582016/35‑1 (MQ=255) cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt > 1:9676080/1‑35 (MQ=255) ttGGGCAGTGATAACGCCCCCACCCAGCCACCTaa < 1:9083449/35‑1 (MQ=255) gggCAGCGATAACGCCCCCACCCAGCCACCTAAAg > 1:15038974/1‑35 (MQ=255) ggCAGTGATAACGCCCCCACCCAGCCACCTAAAgc < 1:18613818/35‑1 (MQ=255) gCAGTGATAACGCCCCCACCCAGCCACCTAAAgcg < 1:12996258/35‑1 (MQ=255) gCAGTGATAACGCCCCCACCCAGCCACCTAAAgcg > 1:6836959/1‑35 (MQ=255) cAGTGATAACGCCCCCACCCAGCCACCTAAAgctg > 1:10349810/1‑33 (MQ=255) cAGTGATAACGCCCCCACCCAGCCACCTAAAgcgg > 1:5334558/1‑35 (MQ=255) aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc < 1:10689511/35‑1 (MQ=255) aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc > 1:12408472/1‑35 (MQ=255) aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc < 1:15138074/35‑1 (MQ=255) aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc < 1:7259190/35‑1 (MQ=255) aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc > 1:8580728/1‑35 (MQ=255) aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc > 1:8303563/1‑35 (MQ=255) gTGATAACGCCCCCACCCAGCCACCTAAAgcggcg < 1:4102563/35‑1 (MQ=255) gTGATAACGCCCCCACCCAGCCACCTAAAgcggcg < 1:15690124/35‑1 (MQ=255) tGATAGCGCCCCCACCCAGCCACCTAAAGCGGCGa < 1:17336780/35‑1 (MQ=255) tGATAACGCCCCCACCCAGCCACCTAAAGCGGCGa < 1:6094578/35‑1 (MQ=255) tAACGCCCCCACCCAGCCACCTAAAGCGGCGAaga < 1:7490137/35‑1 (MQ=255) aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag < 1:4956757/35‑1 (MQ=255) aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag < 1:9737489/35‑1 (MQ=255) aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag > 1:617903/1‑35 (MQ=255) aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag < 1:16305872/35‑1 (MQ=255) ccGCCCACACCCAGCCACCTAAAGCGGCGAAGAGt < 1:16348231/34‑1 (MQ=255) aCGCCCCCACCCAGCCACCTAAAGCGGCGAagagc > 1:3329835/1‑34 (MQ=255) aCGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGt > 1:2371598/1‑35 (MQ=255) aCGCCCCCAACCAGCCAgcgcggatttgccccaac < 1:13334631‑M1/35‑19 (MQ=255) cccccccacCCAGCCAgcgcggatttgccccaacg < 1:19648944‑M1/33‑20 (MQ=255) cGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGTa < 1:14048577/35‑1 (MQ=255) gcacccacccagccAgcgcggatttgccccaacgg < 1:12857338‑M1/32‑21 (MQ=255) gCCCCCCCCcagccaccaagcaggaagatatgacg > 1:6659227‑M2/1‑9 (MQ=255) gCCCCCACCCAGCCAgcgcggatttgccccaacgg < 1:17460161‑M1/35‑21 (MQ=255) cccccccCCcagccaccaaaaacaagccagaaagt > 1:17952655‑M2/2‑9 (MQ=255) ccccccaCCCAGCCAgcgcggatttgccccaacgg < 1:17683028‑M1/34‑21 (MQ=255) ccccccaCCCAGCCAgcgcggatttgccccaacgg < 1:9301780‑M1/34‑21 (MQ=255) cccccCCCcagccaccaaaaacaagccagaaagta > 1:4651634‑M2/1‑8 (MQ=255) cccccACCCAGCCAgcgcggatttgccccaacggt < 1:19894792‑M1/35‑22 (MQ=255) cccccACCCAGCCAgcgcggatttgccccaacggt < 1:1692492‑M1/35‑22 (MQ=255) cacccacccagcCggaacaacagttacccagatgt < 1:5220360‑M1/33‑23 (MQ=255) gcccatccagCCggaacaacagttacccagatgta < 1:18790681‑M1/34‑24 (MQ=255) ccccCCCcagccaccaagcaggaagatatgacgca > 1:18643903‑M2/1‑7 (MQ=255) ccccCCCcagccaccaaaaacaagccagaaagtac > 1:15965649‑M2/1‑7 (MQ=255) ccccCCCcagccaccaaaaacaagccagaaagtac > 1:4724000‑M2/1‑7 (MQ=255) ccccCCCCAGCCAgcgcggatttgccccaacggta < 1:4383169‑M1/35‑23 (MQ=255) ccccACCCAGCCAgcgcggatttgccccaacggta < 1:5633891‑M1/35‑23 (MQ=255) ccccACCCAGCCAgcgcggatttgccccaacggta < 1:17235531‑M1/35‑23 (MQ=255) ccccACCCAGCCACCTAAAGCGGCGAAGAGTAATa > 1:13027472/1‑35 (MQ=255) ccccACCCAGCCACCTAAAGCGGCGAAGAGTAATa > 1:3586085/1‑35 (MQ=255) ccccACCCAGCCACCTAAAGCGGCGAAGAGTAATa < 1:19048868/35‑1 (MQ=255) ccccACCCAGCCACCTAAAGCGGCGAAGAGTAATa > 1:10634006/1‑35 (MQ=255) cccccccagccaccaaaaacaagccagaaagtacc > 1:12108399‑M2/1‑6 (MQ=255) cccccccagccaccaaaaacaagccagaaagtacc > 1:11003722‑M2/1‑6 (MQ=255) cccacccaGCCAgcgcggatttgccccaacggtac < 1:2481547‑M1/35‑24 (MQ=255) cacacccaGCCACCTAAAGCGGCGAAGAGTAATAc < 1:11960108/33‑1 (MQ=255) ccccccagccggaacaacagttacccagatgtatt < 1:19816176‑M1/32‑26 (MQ=255) ccccccagccaccaagcaggaagatatgacgcagt > 1:20538303‑M2/1‑5 (MQ=255) ccccccagccAgcgcggatttgccccaacggtacg < 1:579143‑M1/32‑25 (MQ=255) ccacccaGCCggaacaacagttacccagatgtatt < 1:18266741‑M1/35‑26 (MQ=255) ccacccaGCCACCTAAAGCGGCGAAGAGTAATACa < 1:17127316/35‑1 (MQ=255) cccccagccaccaagcaggaagatatgacgcagtt > 1:13805929‑M2/3‑4 (MQ=255) cccccagccaccaaaaacaagccagaaagtaccaa > 1:7737844‑M2/3‑4 (MQ=255) ccccagccaccaagcaggaagatatgacgcagttt > 1:13517933‑M2/2‑3 (MQ=255) ccccagCCggaacaacagttacccagatgtattgg < 1:11037905‑M1/34‑28 (MQ=255) ccccagCCggaacaacagttacccagatgtattgg < 1:3404639‑M1/34‑28 (MQ=255) acccaGCCggaacaacagttacccagatgtattgg < 1:12326781‑M1/35‑28 (MQ=255) acccaGCCAgcgcggatttgccccaacggtacgcg < 1:5540549‑M1/35‑27 (MQ=255) acccaGCCAgcgcggatttgccccaacggtacgcg < 1:19264190‑M1/35‑27 (MQ=255) acccaGCCACCTAAAGCGGCGAAGAGTAATACATc > 1:8347669/1‑35 (MQ=255) acccaGCCACCTAAAGCGGCGAAGAGTAATACATc > 1:15998529/1‑35 (MQ=255) cccagccaccaagcaggaagatatgacgcagtttt > 1:16795657‑M2/1‑2 (MQ=255) cccaGCCggaacaacagttacccagatgtattggg < 1:11440962‑M1/35‑29 (MQ=255) cccaGCCAgcgcggatttgccccaacggtacgcgg < 1:7806011‑M1/35‑28 (MQ=255) cccaGCCACCTAAAGCGGCGAAGAGTAATACATCg < 1:10955903/35‑1 (MQ=255) cccaGCCACCTAAAGCGGCGAAGAGTAATACATCg < 1:2838964/35‑1 (MQ=255) accagccagcggggatttgccccaacggtacgcgg < 1:7532043‑M1/34‑28 (MQ=255) ccagccaccaagcaggaagatatgacgcagttttt > 1:12961045‑M2/1‑1 (MQ=255) ccagccaccaagcaggaagatatgacgcagttttt > 1:1005664‑M2/1‑1 (MQ=255) ccacccaccaaaaacaagccagaaagtaccaaaac > 1:15182456‑M2/1‑1 (MQ=255) ccaGCCACCTAAAGCTGCGAAGAGTAATACATCGc > 1:19449387/1‑35 (MQ=255) ccaGCCACCTAAAGCGGCGAAGAGTAATACATCGc > 1:10882918/1‑35 (MQ=255) | TTAAAGCAACGTTGGGCAGTGATAACGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGTAATACATCGC > REL606/3040599‑3040667 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |