New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422591 =80 (0.780)12 (0.150) 3/38 NT 17.9% intergenic (‑278/+184) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter
?REL606 = 2605528 47 (0.580)coding (679/1254 nt) glyA serine hydroxymethyltransferase

TCTTTATTTTCCCCCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/422610‑422591
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccACTCACAAAACCCTGGCGGGTCCGCGCGGCGGCC  <  REL606/2605528‑2605495
                                                      
cCTTTGTTTTCCCCCCCACCACTCACAAAACCCTG                     <  1:9927148/34‑1
     tTTTTCCCCCCCACCACTCACAAAACCCTGGCGGG                <  1:4320400/34‑1
      TTTTCCCCCCCACCACTCACAAAACCCTGGCGGGT               <  1:4249396/35‑1
      TTTTCCCCCCCACCACTCACAAAACCCTGGCGGGT               <  1:3172636/35‑1
      TTTCCCCCCCCACCACTCACAAAACCCTGGCGGGT               <  1:16972737/35‑1
       ttcCCCCCCCACCACTCACAAAACCCTGGCGGGTC              <  1:3020221/32‑1
       tgTCCCCCCCACCACTCACAAAACCCTGGCGGGTC              <  1:15868046/33‑1
       tcTCCCCCCCACCACTCACAAAACCCTGGCGGGTC              <  1:12340464/33‑1
       TTTCCCCCCCACCACTCACAAAACCCTGGCGGGTC              <  1:1297414/35‑1
       TTTCCCCCCCACCACTCACAAAACCCTGGCGGGTC              <  1:17608014/35‑1
       TTTCCCCCCCACCACTCACAAAACCCTGGCGGGTC              <  1:9442499/35‑1
        gcCCCCCCCACCACTCACAAAACCCTGGCGGGTCC             <  1:20118241/33‑1
        TTCCCCCCCACCACTCACAAAACCCTGGCGGGTCC             <  1:15820885/35‑1
        TTCCCCCCCACCACTCACAAAACCCTGGCGGGTCC             <  1:306456/35‑1
         ctCCCCCCACCACTCACAAAACCCTGGCGGGTCCG            <  1:299456/33‑1
          CCCCCCCCCCACTCACAAAACCCTGGCGGGTCCGC           <  1:4175635/35‑1
          CCCCCCCACCACTCACAAAACCCTGGCGGGTCCGC           <  1:8810253/35‑1
          CCCCCCCACCACTCACAAAACCCTGGCGGGTCCGC           <  1:1740012/35‑1
          CCCCCCCACCACTCACAAAACCCTGGCGGGTCCGC           <  1:6322682/35‑1
          CCCCCCCACCACTCACAAAACCCTGGCGGGTCCGC           <  1:12329414/35‑1
          CCCCCCCACCACTCACAAAACCCTGGCGGGTCCGC           <  1:15860569/35‑1
           CCCCCCACCACTCACAAAACCCTGGCGGGTCCGCG          <  1:20111477/35‑1
           CCCCCCACCACTCACAAAACCCTGGCGGGTCCGCG          <  1:17085246/35‑1
             CCCCACCACTCACAAAACCCTGGCGGGTCCGCGCG        <  1:2147401/35‑1
             CCCCACCACTCACAAAACCCTGGCGGGTCCGCGCG        <  1:878519/35‑1
             CCCCACCACTCACAAAACCCTGGCGGGTCCGCGCG        <  1:19062868/35‑1
              CCCACCACTCACAAAACCCTGGCGGGTCCGCGCGG       <  1:8273076/35‑1
               CCACCACTCACAAAACCCTGGCGGGTCCGCGCGGC      <  1:974071/35‑1
               CCACCACTCACAAAACCCTGGCGGGTCCGCGCGGC      <  1:5513818/35‑1
               CCACCACTCACAAAACCCTGGCGGGTCCGCGCGGC      >  1:3320404/1‑35
               CCACCACTCACAAAACCCTGGCGGGTCCGCGCGGC      <  1:18109141/35‑1
                CACCACTCACAAAACCCTGGCGGGTCCGCGCGGCG     >  1:3423178/1‑35
                CACCACTCACAAAACCCTGGCGGGTCCGCGCGGCG     >  1:9446786/1‑35
                CACCACTCACAAAACCCTGGCGGGTCCGCGCGGCG     <  1:17214636/35‑1
                CACCACTCACAAAACCCTGGCGGGGCCGCGCGGCG     >  1:3818203/1‑35
                CACAACTCACAAAACCCTGGCGGGTCCGCGCGGCG     <  1:19826000/35‑1
                 ACCACTCACAAAACCCTGGCGGGTCCGCGCGGCGG    <  1:11082247/35‑1
                 ACCACTCACAAAACCCTGGCGGGTCCGCGCGGCGG    <  1:4876347/35‑1
                 ACCACTCACAAAACCCTGGCGGGTCCGCGCGGCGG    <  1:3373737/35‑1
                  CCACTCACAAAACCCTGGCGGGTCCGCGCGGCGGC   <  1:697361/35‑1
                  CCACTCACAAAACCCTGGCGGGTCCGCGCGGCGGC   <  1:10259806/35‑1
                   CACTCACAAAACCCTGGCGGGTCCGCGCTGCGGCC  >  1:7487442/1‑35
                   CACTCACAAAACCCTGGCGGGTCCGCGCGGAGGCC  <  1:2657364/35‑1
                                                      
TCTTTATTTTCCCCCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/422610‑422591
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccACTCACAAAACCCTGGCGGGTCCGCGCGGCGGCC  <  REL606/2605528‑2605495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.