New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1689078 = | 46 (0.450) | 9 (0.120) | 4/34 | NT | 15.7% | coding (362/636 nt) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
? | REL606 | = 1996353 | 64 (0.880) | coding (1494/1644 nt) | yeeO | predicted multidrug efflux system |
Only 100 of 132 total aligned reads displayed.
CGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTA > REL606/1996319‑1996387 | cGGCAAACATTCCCATCCAGACACCAACCACAccc > 1:19884259/1‑35 (MQ=255) ggCAAACATTCCCATCCAGACACCAACCACACCCc < 1:17682290‑M2/35‑2 (MQ=255) ggCAAACATTCCCATCCAGACACCAACCACACCCc > 1:7131349‑M2/1‑34 (MQ=255) ggCAAACATTCCCATCCAGACACCAACCACACCCc < 1:13477524‑M2/35‑2 (MQ=255) ggCAAACATTCCCATCCAGACACCAACAACACCCc > 1:14999758‑M2/1‑34 (MQ=255) gccAACCATTCACATCCAGACACCAACCACAcccc < 1:14435126/33‑1 (MQ=25) gCAAACATTCCCATCCAGACACCAACCACACCCca < 1:15811488‑M2/35‑3 (MQ=255) gCAAACATTCCCATCCAGACACCAACCACACCCca > 1:3255841‑M2/1‑33 (MQ=255) gCAAACATTCCCATCCAGACACCAACCACACCCca < 1:8007759‑M2/35‑3 (MQ=255) cgaacaTTCCCATCCAGACACCAACCACACCCcag > 1:7788969‑M2/3‑32 (MQ=255) cAAACATTCCCATCCAGACACCAACCACACCCcag < 1:4542821‑M2/35‑4 (MQ=255) cAAACATTCCCATCCAGACACCAACCACACCCcag < 1:14052991‑M2/35‑4 (MQ=255) cAAACATTCCCATCCAGACACCAACCACACCCcag < 1:6321948‑M2/35‑4 (MQ=255) cAAACATTCCCATCCAGACACCAACCACACCCcag < 1:869049‑M2/35‑4 (MQ=255) cAAACATTCCCATCCAGACACCAACCACACCCcag < 1:10893077‑M2/35‑4 (MQ=255) aaaCATTCCCATCCAGACACCAACCACACCCcagc < 1:13219822‑M2/35‑5 (MQ=255) aaaCATTCCCATCCAGACACCAACCACACCCcagc < 1:8722101‑M2/35‑5 (MQ=255) aaaCATTCCCATCCAGACACCAACCACACCCcaga < 1:5572514‑M2/35‑5 (MQ=255) aaaCATTCCCATCCAGACACCAACCACACACcagc > 1:6583087‑M2/1‑31 (MQ=255) aaaCATTACCATCCAGACACCAACCACACCCcagc > 1:4085891‑M2/1‑31 (MQ=255) aCATTCCCATCCAGACACCAACCACACCCcagcca < 1:11845146‑M2/35‑7 (MQ=255) aCATTCCCATCCAGACACCAACCACACCCcagcca < 1:11768‑M2/35‑7 (MQ=255) aCATTCCCATCCAGACACCAACCACACCCcagcca < 1:829864‑M2/35‑7 (MQ=255) aTTCCCATCCAGACACCAACCACACCCCAGCCAAg > 1:20255839/1‑35 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGc > 1:13135677/1‑35 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGc > 1:3404697/1‑35 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGc > 1:18108433/1‑35 (MQ=255) tCCCATCCAGACACCAACCACACCCCAGCCAAGCa > 1:19329342/1‑35 (MQ=255) ccccACCCAGACCCCAACCACACCCCAGCCAAGCa < 1:98443/34‑1 (MQ=255) cccATCCAGACCCCAACCACACCCCAGCCAAGCAt < 1:1559412/35‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCAt > 1:3442580/1‑35 (MQ=255) cccACCCAGACACCAACAACACCCCAGCCAAGCAt < 1:13754839/35‑1 (MQ=37) ccATCCAGACACCAACCACACCCCAGCCAAGCATg < 1:14233974/35‑1 (MQ=255) cATCCAGACCCCAACCACACCCCAGCCAAGCATGa < 1:3053906/35‑1 (MQ=255) cATCCAGACACCAACCACACCCCAGCCAAGCATGa > 1:4394420/1‑35 (MQ=255) cATCCAGACACCAACCACACCCCAGCCAAGCATGa > 1:861922/1‑35 (MQ=255) tCCAGACACCAACCACACCCCAGCCAAGCATGAtt > 1:2948814/1‑35 (MQ=255) cAGACCCCAACCACACCCCAGCCAAGCATGATTcc < 1:19548576/35‑1 (MQ=255) cAGACACCAACCACACCCCAGCCAAGCATGATTcc > 1:17994879/1‑35 (MQ=255) cAGACACCAACCACACCCCAGCCAAGCATGATTcc > 1:6582298/1‑35 (MQ=255) cAGACACCAACCACACCCCAGCCAAGCATGATTcc > 1:8527267/1‑35 (MQ=255) aGACACCAACCACACCCCAGCCAAGCATGATTccc > 1:3969233/1‑35 (MQ=255) aGACACCAACCACACCCCAGCCAAGCATGATTccc > 1:5731563/1‑35 (MQ=255) aGACACCAACCACACCCCAGCCAAGCATGATTccc > 1:3202512/1‑35 (MQ=255) aGACACCAACCACACCCCAGCCAAGCATGATTccc > 1:13336727/1‑35 (MQ=255) aGACACCAACCACACCCCAGCCAAGCATGATTccc < 1:7098418/35‑1 (MQ=255) aGACACCAACCACACCCCAGCCAAGCATGATTccc > 1:17938196/1‑35 (MQ=255) aGACACCAACCACACCCCAGCAAAGCATGATTccc < 1:13427656/35‑1 (MQ=255) gACACCAACCACACCCCAGCCAAGCATGATTCCCa < 1:4265178/35‑1 (MQ=255) tcacCAACCACACCCCAGCCAAGCATGATTCCCAg < 1:10954747/34‑1 (MQ=255) accccaaccaCACCCCAGCCAAGCATGATTCCCAg < 1:7312387/32‑1 (MQ=255) acacCAACCCCACCCCAGCCAAGCATGATTCCCAg < 1:11980847/35‑1 (MQ=255) cacCAACCACACCCCAGCCAAGCATGATTCCCAGc < 1:8648851/35‑1 (MQ=255) cacCAACCACACCCCAGCCAAGCATGATTCCCAGc < 1:3183980/35‑1 (MQ=255) accaaccaCACCCCAGCCAAGCATGATTCCCAGca > 1:14597630/1‑35 (MQ=255) accaaccaCACCCCAGCCAAGCATGATTCCCAGca > 1:11741818/1‑35 (MQ=255) ccaaccaCACCCCAGCCAAGCATGATTCCCAGcac > 1:17791637/1‑35 (MQ=255) ccaaccaCACCCCAGCCAAGCATGATTCCCAGcac > 1:4332577/1‑35 (MQ=255) ccaaccaCACCCCAGCCAACCATGATTCCCAGcca > 1:14542389/1‑33 (MQ=38) caaccaCACCCCAGCCAAGCATGATTCCCAGcaca > 1:17810412/1‑35 (MQ=255) caaccaCACCCCAGCCAAGCATGATTCCCAGcaca > 1:1562920/1‑35 (MQ=255) caaccaCACCCCAGCCAAGCATGATTCCCAGcaca < 1:8728434/35‑1 (MQ=255) caaccaCACCCCAGCCAAGCATGATTCCCAGcaca < 1:5114704/35‑1 (MQ=255) aaccaCACCCCAGCCAAGCATGATTCCCAGCACAt < 1:16789835/35‑1 (MQ=255) aaccaCACCCCAGCCAAGCATGATTCCCAGCACAt < 1:17165262/35‑1 (MQ=255) aaccaCACCCCAGCCAAGCATGATTCCCAGCACAt < 1:2444182/35‑1 (MQ=255) aaccaCACCCCAGCCAAGCATGATTCCCAGCACAt < 1:4283426/35‑1 (MQ=255) cccacACCCcagccaacgtcgtattaaacactgca > 1:14410103‑M2/2‑9 (MQ=255) cccaCACCCCAGCCAAGCATGATTCCCAGCACATa < 1:14336755/34‑1 (MQ=255) accaCACCCcagccaacgtcgtattaaacactgca > 1:11073685‑M2/1‑9 (MQ=255) accaCACCCCAGCCAAGCATGATTCCCAGCACATa < 1:2332034/35‑1 (MQ=255) accaCACCCCAGCCAAGCATGATTCCCAGCACATa > 1:297477/1‑35 (MQ=255) accaCACCCCAGCCAAGCATGATTCCCAGCACATa > 1:7140475/1‑35 (MQ=255) ccaCACCCcagccaacgtcgtattaaacactgcat > 1:10131294‑M2/1‑8 (MQ=255) ccaCACCCCAGCCAAGCATGATTCCCAGCACATaa > 1:4208905/1‑35 (MQ=255) ccaCACCCCAGCCAAGCATGATTCCCAGCACATaa < 1:3627811/35‑1 (MQ=255) cccaccccagccaacgtcgtattaaacactgcatt > 1:18851200‑M2/3‑7 (MQ=255) cccacCCCAGCCAAGCATGATTCCCAGCACATAAc < 1:1201714/33‑1 (MQ=255) cacaCCCcagccaacgtcgtattaaacactgcatt > 1:5513210‑M2/1‑7 (MQ=255) cacaCCCCAGCCAAGCATGATTCCCAGCACATAAc < 1:7693141/35‑1 (MQ=255) cacaCCCCAGCCAAGCATGATTCCCAGCACATAAc < 1:8287046/35‑1 (MQ=255) cacaCCCCAGCCAAGCATGATTCCCAGCACATAAc > 1:20582458/1‑35 (MQ=255) cacaCCCCAGCCAAGCATGATTCCCAGCACATAAc < 1:2962862/35‑1 (MQ=255) cacaCCCCAGCCAAGCATGATTCCCAGCACATAAc < 1:5047711/35‑1 (MQ=255) caaaCCCcagccaacgtcgtattaaacactgcatt > 1:19101150‑M2/1‑7 (MQ=255) acacCCcagccaacgtcgtattaaacactgcattc > 1:19492857‑M2/1‑6 (MQ=255) acacCCCAGCCAAGCATGATTCCCAGCACATAAcc < 1:4540547/35‑1 (MQ=255) ccccccagccaacgtcgtattaaacactgcattcg > 1:11352624‑M2/3‑5 (MQ=255) cacCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:12832856/35‑1 (MQ=255) acCCcagccaacgtcgtattaaacactgcattcgg > 1:7514103‑M2/1‑4 (MQ=255) acCCcagccaacgtcgtattaaacactgcattcgg > 1:908720‑M2/1‑4 (MQ=255) acCCCAGCCAAGCATGATTCCCAGCACATAACCGa > 1:7461089/1‑35 (MQ=255) acCCCAGCCAAGCATGATTCCCAGCACATAACCGa > 1:241949/1‑35 (MQ=255) acCCCAGCCAAGCATGATTCCCAGCACATAACCGa > 1:16694993/1‑35 (MQ=255) ccccATCCAAGCATGATTCCCAGCACATAACCGAc > 1:16280917/1‑35 (MQ=255) cccagccaacgtcgtattaaacactgcattcggct > 1:5260723‑M2/1‑2 (MQ=255) cccagccaacgtcgtattaaacactgcattcggct > 1:5125971‑M2/1‑2 (MQ=255) cccagccaacgtcgtattaaacactgcattcggct > 1:9830077‑M2/1‑2 (MQ=255) cccAGCCAAGCATGATTCCCAGCACATAACCGACt < 1:7929405/35‑1 (MQ=255) ccagccaacgtcgtattaaacactgcattcggctg > 1:1855035‑M2/1‑1 (MQ=255) | CGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTA > REL606/1996319‑1996387 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |