New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 580468 = | 60 (0.580) | 16 (0.200) | 4/38 | NT | 16.7% | coding (852/3144 nt) | cusA | copper/silver efflux system, membrane component |
? | REL606 | 2715365 = | 112 (1.380) | coding (1506/2631 nt) | alaS | alanyl‑tRNA synthetase |
Only 100 of 269 total aligned reads displayed.
CTTTCAGTTCGCCTTTATCGCCAACCTGACCGCCGGATTCCGCATAGAATGGCGTTTGATCCAGCACGA > REL606/2715331‑2715399 | cTTTCAGTTCGCCTTTATCGCCAACCTGAccgccg > 1:1184912/1‑35 (MQ=255) tttCAGTTCGCCTTTATCGCCAACCTGACCGCCgg > 1:363901/1‑35 (MQ=255) tttCAGTTCGCCTTTATCGCCAACCTGACCGCCgg > 1:7808458/1‑35 (MQ=255) ttCAGTTCGCCTTTATCGCCAACCTTACCGCCGGa > 1:8648018/1‑35 (MQ=255) ttCAGTTCGCCTTTATCGCCAACCTGACCGCCGGa > 1:16613518/1‑35 (MQ=255) ttCAGTTCGCCTTTATCGCCAACCTGACCGCCGGa > 1:5404817/1‑35 (MQ=255) tCAGTTCGCCTTTATCGCCAACCTGACCGCCGGAt > 1:6707047/1‑35 (MQ=255) cAGTTCGCCTTTATCGCCAACCTGACCGCCGGAtt > 1:6853656/1‑35 (MQ=255) cAGTTCGCCTTTATCGCCAACCTGACCGCCGGAtt > 1:12552503/1‑35 (MQ=255) cAGTTCGCCTTTATCGCCAACCTGACCGCCGGAtt > 1:18665472/1‑35 (MQ=255) cAGTTCGCCTTTATCGCCAACCTGACCGCCGGAtt > 1:2020303/1‑35 (MQ=255) ngTTCGCCTTTATCGCCAACCTGACCGCCGGATTc > 1:14084108/2‑35 (MQ=255) aGTTCGCCTTTATCGCCAACCTGACCGCCGGATTc > 1:17149734/1‑35 (MQ=255) aGTTCGCCTTTATCGCCAACCTGACCGCCGGATTc > 1:12085438/1‑35 (MQ=255) aGTTCGCCTTTATCGCCAACCTGACCGCCGGATTc > 1:5636451/1‑35 (MQ=255) gTTCGCCTTTATCGCCAACCTGACCGCCGGATTcc > 1:10282849/1‑35 (MQ=255) gTTCGCCTTTATCGCCAACCTGACCGCCGGATTcc > 1:8888281/1‑35 (MQ=255) gTTCGCCTTTATCGCCAACCTGACCGCCGGATTcc > 1:6080632/1‑35 (MQ=255) ttCGCCTTTATCGCCAACCTGACCGCCGGATTCCg > 1:3243474/1‑35 (MQ=255) ttCGCCTTTATCGCCAACCTGACCGCCGGATTCCg > 1:14868843/1‑35 (MQ=255) ttCGCCTTTATCGCCAACCTGACCGCCGGATTCCg > 1:8712511/1‑35 (MQ=255) tCGCCTTTATCGCCAACCTGACCGCCGGATTCCGc > 1:14706231/1‑35 (MQ=255) cGCCTTTATCGCCAACCTGACCGCCGGATTCCGCa > 1:15490061/1‑35 (MQ=255) tcttttACCGCCACCCTCCCCGCCGGATTCCGCAt < 1:2808964/32‑1 (MQ=9) gCCTTTATCGCCAACCTGACCGCCGGATTCCGCAt > 1:18076828/1‑35 (MQ=255) gCCTTTATCGCCAACCTGACCGCCGGATTCCGCAt > 1:736561/1‑35 (MQ=255) gCCTTTATCGCCAACCTGACCGCAGGATTCCGCAt < 1:17634794/35‑1 (MQ=255) cTTTATCGCCAACCTGACCGCCGGATTCCGCATAg > 1:504310/1‑35 (MQ=255) cTTTATCGCCAACCTGACCGCCGGATTCCGCATAg > 1:10680764/1‑35 (MQ=255) tttATCGCCAACCTGACCGCCGGATTCCGCATAGa > 1:19733274/1‑35 (MQ=255) tttATCGCCAACCTGACCGCCGGATTCCGCATAGa > 1:6316212/1‑35 (MQ=255) tttATCGCCAACCTGACCGCCGGATTCCGCATAGa > 1:15547959/1‑35 (MQ=255) ttATCGCCAACCTGACCGCCGGATTCCGCATAGaa > 1:13013623/1‑35 (MQ=255) tATCGCCAACCTGACCGCCGGATTCCGCATAGAAt > 1:7688260/1‑35 (MQ=255) tATCGCCAACCTGACCGCCGGATTCCGCATAGAAt > 1:4048017/1‑35 (MQ=255) aTCGCCAACCTGACCTCCGGATTCCGCATAGAATg > 1:5783409/1‑35 (MQ=255) aTCGCCAACCTGACCGCCGGATTCCGCATAGAATg > 1:17808867/1‑35 (MQ=255) tCGCCAACCTGACCGCCGGATTCCGCATAGAATgg > 1:4749474/1‑35 (MQ=255) tCGCCAACCTGACCGCCGGATTCCGCATAGAATgg > 1:8101251/1‑35 (MQ=255) cccccAACCCGCCCGCCGGATTCCGCATAGAATgg < 1:12698901/32‑1 (MQ=25) cGCCAACCTGACCGCCTGATTCCGCATAGAATGGc > 1:1042712/1‑35 (MQ=255) cGCCAACCTGACCGCCGTATTCCGCATAGAATGGc > 1:1897021/1‑35 (MQ=255) gCCAACCTGACCGCCGGATTCCGCATAGAATGGCg > 1:15834483/1‑35 (MQ=255) gCCAACCTGACCGCCGGATTCCGCATAGAATGGCg > 1:9258313/1‑35 (MQ=255) gCCAACCTGACCGCCGGATTCCGCATAGAATGGCg > 1:19144398/1‑35 (MQ=255) gCCAACCTGACCGCCGGATTCCGCATAGAATGGCg > 1:4704258/1‑35 (MQ=255) gCCAACCTGACCGCCGGATTCCGCATAGAATGGCg > 1:19478272/1‑35 (MQ=255) gCCAACCTGACCGCCGGATTCCGCATAGAATGGCg > 1:2472437/1‑35 (MQ=255) ccacccggcccgccGGATTCCGCATAGAATGGCGt < 1:19216221‑M2/21‑1 (MQ=255) ccAACCTGACCGCCGGATTCCGCATAGAATGGCGt > 1:13540229/1‑35 (MQ=255) cAACCTGACCGCCGGATTCCGCATAGAATGGCGtt > 1:3098809/1‑35 (MQ=255) cAACCTGACCGCCGGATTCCGCATAGAATGGCGtt > 1:19945148/1‑35 (MQ=255) accctgcccgccGGATTCCGCATAGAATGGCGttt < 1:2946741‑M2/23‑1 (MQ=255) ccctgcccgccGGATTCCGCATAGAATGGCGTTTg < 1:5933957‑M2/24‑1 (MQ=255) ccccccccgccGGATTCCGCATAGAATGGCGTTTg < 1:5227141‑M2/24‑1 (MQ=255) aCCTGACCGCCGGATTCCGCATAGAATGGCGTTTg > 1:16304142/1‑35 (MQ=255) ccTGACCGCCGGATTCCGCATAGAATGGCGTTTGa > 1:15332433/1‑35 (MQ=255) cggcccgccGGATTCCGCATAGAATGGCGTTTGAt < 1:17388382‑M2/26‑1 (MQ=255) ccccccgccGGATTCCGCATAGAATGGCGTTTGAt < 1:1224119‑M2/26‑1 (MQ=255) ggcccgccGGATTCCGCATAGAATGGCGTTTGATc < 1:11227907‑M2/27‑1 (MQ=255) cgcccgccGGATTCCGCATAGAATGGCGTTTGATc < 1:6416229‑M2/27‑1 (MQ=255) cccccgccGGATTCCGCATAGAATGGCGTTTGATc < 1:4647489‑M2/27‑1 (MQ=255) gACCGCCGGATTCCGCATAGAATGGCGTTTGATcc > 1:11610099/1‑35 (MQ=255) gACCGCCGGATTCCGCATAGAATGGCGTTTGATca > 1:2905407/1‑34 (MQ=255) ccccgccGGATTCCGCATAGAATGGCGTTTGATcc < 1:97628‑M2/28‑1 (MQ=255) ccccgccGGATTACGCATAGAATGGCGTTTGATcc < 1:10819188‑M2/28‑1 (MQ=255) aCCGCCGGATTCCGCATATAATGGCGTTTGATCCa > 1:15291856/1‑35 (MQ=255) aCCGCCGGATTCCGCATAGAATGGCGTTTGATCCa > 1:19042242/1‑35 (MQ=255) aCCGCCGGATTCCGCATAGAATGGCGTTTGATCCa > 1:20124437/1‑35 (MQ=255) aCCGCCGGATTCCGCATAGAATGGCGTTTGATCCa > 1:9881937/1‑35 (MQ=255) ccgccGGATTCCGCATAGAATGGCGTTTGATCCAg < 1:12803509‑M2/30‑1 (MQ=255) ccgcaGGATTCCGCATAGAATGGCGTTTGATCCAg < 1:17316052‑M2/30‑1 (MQ=255) cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc < 1:12347838‑M2/31‑1 (MQ=255) cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc > 1:16977419‑M2/5‑35 (MQ=255) cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc < 1:17465616‑M2/31‑1 (MQ=255) cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc > 1:15984446‑M2/5‑35 (MQ=255) cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc < 1:18453468‑M2/31‑1 (MQ=255) cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc < 1:18646298‑M2/31‑1 (MQ=255) cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc > 1:19577620‑M2/5‑35 (MQ=255) cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc < 1:4587456‑M2/31‑1 (MQ=255) cgccGGATTCCGCATAGAATGGCGTTTGATCCAGc < 1:384322‑M2/31‑1 (MQ=255) gccGGATTCCGCATAGAATGGCGTTTGATCCAGCa > 1:4879748‑M2/4‑35 (MQ=255) gccGGATTCCGCATAGAATGGCGTTTGATCCAGCa > 1:2151161‑M2/4‑35 (MQ=255) gccGGATTCCGCATAGAATGGCGTTTGATCCAGCa < 1:11887410‑M2/32‑1 (MQ=255) gccGGATTCCGCATAGAATGGCGTTTGATCCAGCa > 1:7995176‑M2/4‑35 (MQ=255) gccGGATTCCGCATAGAATGGCGTTTGATCCAGCa > 1:8455224‑M2/4‑35 (MQ=255) ccGGATTCCGCATAGAATGGCGTTTGATCCAGCAc > 1:13181253‑M2/3‑35 (MQ=255) ccGGATTCCGCATAGAATGGCGTTTGATCCAGCAc > 1:19936325‑M2/3‑35 (MQ=255) ccGGATTCCGCATAGAATGGCGTTTGATCCAGCAc < 1:19316077‑M2/33‑1 (MQ=255) ccGGATTCCGCATAGAATGGCGTTTGATCCAGCAc > 1:3812944‑M2/3‑35 (MQ=255) cGGATTCCGCATAGAATGGCGTTTGATCCAGCACg < 1:14603145‑M2/34‑1 (MQ=255) cGGATTCCGCATAGAATGGCGTTTGATCCAGCACg < 1:15108453‑M2/34‑1 (MQ=255) cGGATTCCGCATAGAATGGCGTTTGATCCAGCACg > 1:9328302‑M2/2‑35 (MQ=255) cGGATTCCGCATAGAATGGCGTTTGATCCAGCACg < 1:18008610‑M2/34‑1 (MQ=255) cGGATGCCGCATAGAATGGCGTTTGATCCAGCACg < 1:8166824‑M2/34‑1 (MQ=255) ggATTCCGCATAGAATGGCGTTTGATCCAGCACGa > 1:8324443/1‑35 (MQ=255) ggATTCCGCATAGAATGGCGTTTGATCCAGCACGa > 1:13749730/1‑35 (MQ=255) ggATTCCGCATAGAATGGCGTTTGATCCAGCACGa > 1:9367875/1‑35 (MQ=255) ggATTCCGCATAGAATGGCGTTTGATCCAGCACGa > 1:7424232/1‑35 (MQ=255) ggATTCCGCATAGAATGGCGTTTGATCCAGCACGa < 1:3387356/35‑1 (MQ=255) | CTTTCAGTTCGCCTTTATCGCCAACCTGACCGCCGGATTCCGCATAGAATGGCGTTTGATCCAGCACGA > REL606/2715331‑2715399 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |