New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1199795 =69 (0.670)4 (0.060) 3/30 NT 7.4% coding (20/828 nt) potB spermidine/putrescine ABC transporter membrane protein
?REL606 = 3283512 57 (0.890)intergenic (+39/‑175) ptsO/yrbL phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr)/hypothetical protein

Only 100 of 161 total aligned reads displayed.

CAGGTTGGGCAGAAAGACAAACAACACAAGCCAACCGACAATAGTGACAATCACTACATTCTGGAACTT  >  REL606/1199761‑1199829
                                  |                                  
atcactttgacatacaactcccttcaaactccccc                                    <  1:15300364‑M1/1‑1 (MQ=255)
atcactttgacatacaactcccttcaaactccccc                                    >  1:20570389‑M1/35‑35 (MQ=255)
agcactttgacatacaactcccttcaaactccccc                                    >  1:11608897‑M1/35‑35 (MQ=255)
 tcactttgacatacaactcccttcaaactcccccc                                   <  1:10316035‑M1/2‑1 (MQ=255)
 tcactttgacatacaactcccttcaaactcccccc                                   <  1:18540439‑M1/2‑1 (MQ=255)
 aGGTTGGGCAGAAAGACAAACAACACAATCCAAcc                                   >  1:8248214/1‑35 (MQ=255)
 aGGTTGGGCAGAAAGACAAACAACACAAGCCAAcc                                   <  1:13500349/35‑1 (MQ=255)
 aGGTTGGGCAGAAAGACAAACAACACAAGCCAAcc                                   >  1:10505037/1‑35 (MQ=255)
 aGGTTGGGCAGAAAGACAAACAACACAAGCCAAcc                                   >  1:3501867/1‑35 (MQ=255)
  ggTTGGGCAGAAAGACAAACAACACAAGCCAACCg                                  <  1:14417119/35‑1 (MQ=255)
  ggTTGGGCAGAAAGACAAACAACACAAGCCAACCg                                  >  1:16354471/1‑35 (MQ=255)
  ggTTGGGCAGAAAGACAAACAACACAAGCCAACCg                                  >  1:19103973/1‑35 (MQ=255)
  ggTTGGGCAGAAAGACAAACAACACAAGCCAACCg                                  >  1:5231465/1‑35 (MQ=255)
  cactttgacatacaactcccttcaaactccccCCg                                  >  1:12869415‑M1/33‑35 (MQ=255)
  cactttgacatacaactcccttcaaactccccCCg                                  <  1:5457204‑M1/3‑1 (MQ=255)
   gTTGGGCAGAAAGACAAACAACACAAGCCAACCGa                                 >  1:19282123/1‑35 (MQ=255)
   gTTGGGCAGAAAGACAAACAACACAAGCCAACCGa                                 >  1:11039282/1‑35 (MQ=255)
   gTTGGGCAGAAAGACAAACAACACAAGCCAACCGa                                 >  1:12160364/1‑35 (MQ=255)
   gTTGGGCAGAAAGACAAACAACACAAGCCAACCGa                                 >  1:7294604/1‑35 (MQ=255)
   actttgacatacaactcccttcaaactccccCCGa                                 <  1:18334360‑M1/4‑1 (MQ=255)
   actttgacatacaactcccttcaaactccccCCGa                                 >  1:17734722‑M1/32‑35 (MQ=255)
    ttGGGCATAAAGACAAACAACACAAGCCAACCGAc                                >  1:19373516/1‑35 (MQ=255)
    ctttgacatacaactcccttcaaactcctcCCGAc                                <  1:986674‑M1/5‑1 (MQ=255)
    ctttgacatacaactcccttcaaactccccCCGAc                                <  1:2490102‑M1/5‑1 (MQ=255)
     tttgacatacaactcccttcaaactccccCCGACa                               <  1:9748028‑M1/6‑1 (MQ=255)
     tttgacatacaactcccttcaaactccccCCGACa                               >  1:15891616‑M1/30‑35 (MQ=255)
     tttgacatacaactcccttcaaactccccCCGACa                               >  1:16369798‑M1/30‑35 (MQ=255)
     tGGGCAGAAAGACAAACAACACAAGCCAACCGACa                               >  1:18921002/1‑35 (MQ=255)
      ttgacatacaactcccttcaaactccccCCGACaa                              >  1:14140842‑M1/29‑35 (MQ=255)
      ttgacatacaactcccttcaaactccccCCGACaa                              >  1:9072429‑M1/29‑35 (MQ=255)
      ttgacatacaactcccttcaaactccccCCGACaa                              <  1:6827372‑M1/7‑1 (MQ=255)
      ttgacatacaactcccttcaaactccccCCGACaa                              <  1:4016460‑M1/7‑1 (MQ=255)
      ttgacatacaactcccttcaaactccccCCGACaa                              >  1:18104756‑M1/29‑35 (MQ=255)
      ttgacatacaactcccttcaaactccccCCGACaa                              <  1:13099873‑M1/7‑1 (MQ=255)
      gggCAGAAAGACAAACAACACAAGCCAACCGACaa                              >  1:20559374/1‑35 (MQ=255)
      gggCAGAAAGACAAACAACACAAGCCAACCGACaa                              >  1:17386825/1‑35 (MQ=255)
       tgacatacaactcccttcaaactccccCCGACAAt                             <  1:4501734‑M1/8‑1 (MQ=255)
       ggCAGAAAGACAAACAACACAAGCCAACCGACAAt                             >  1:20328654/1‑35 (MQ=255)
       ggCAGAAAGACAAACAACACAAGCCAACCGACAAt                             >  1:3330657/1‑35 (MQ=255)
       ggCAGAAAGACAAACAACACAAGCCAACCGACAAt                             >  1:1460199/1‑35 (MQ=255)
        gacatacaactcccttcaaactccccCCGACAATa                            <  1:1154976‑M1/9‑1 (MQ=255)
        gCAGAAATACAAACAACACAAGCCAACCGACAATa                            >  1:3484064/1‑35 (MQ=255)
        gCAGAAAGACAAACAACACAAGCCAACCGACAATa                            >  1:18018347/1‑35 (MQ=255)
        gCAGAAAGACAAACAACACAAGCCAACCGACAATa                            >  1:6626783/1‑35 (MQ=255)
         cAGAAAGACAAACAACACAAGCCAACCGACAATAg                           >  1:17817271/1‑35 (MQ=255)
         cAGAAAGACAAACAACACAAGCCAACCGACAATAg                           >  1:13466445/1‑35 (MQ=255)
          aGAAAGACAAACAACACAAGCCAACCGACAATAGt                          >  1:11861418/1‑35 (MQ=255)
          aGAAAGACAAACAACACAAGCCAACCGACAATAGt                          >  1:9152055/1‑35 (MQ=255)
          aGAAAGACAAACAACACAAGCCAACCGACAATAGt                          >  1:12312270/1‑35 (MQ=255)
          aGAAAGACAAACAACACAAGCCAACCGACAATAGt                          >  1:18466646/1‑35 (MQ=255)
            aaaGACAAACAACACAAGCCAACCGACAATAGTGa                        >  1:5601488/1‑35 (MQ=255)
            aaaGACAAACAACACAAGCCAACCGACAATAGTGa                        >  1:17026579/1‑35 (MQ=255)
             aaGACAAACAACACAAGCCAACCGACAATAGTGAc                       >  1:606012/1‑35 (MQ=255)
             aaGACAAACAACACAAGCCAACCGACAATAGTGAc                       >  1:10704599/1‑35 (MQ=255)
               gACAAACAACACAAGCCAACCGACAATAGTGACaa                     >  1:9351657/1‑35 (MQ=255)
                acaaacaaCACAAGCCAACCGACAATAGTGACAAt                    >  1:16697887/1‑35 (MQ=255)
                acaaacaaCACAAGCCAACCGACAATAGTGACAAt                    >  1:14925678/1‑35 (MQ=255)
                acaaacaaCACAAGCCAACCGACAATAGTGACAAt                    >  1:19669655/1‑35 (MQ=255)
                acaaacaaCACAAGCCAACCGACAATAGTGACAAt                    >  1:10250110/1‑35 (MQ=255)
                 caaacaaCACAAGCCAACCGACAATAGTGACAATc                   >  1:6373581/1‑35 (MQ=255)
                 caaacaaCACAAGCCAACCGACAATAGTGACAATc                   >  1:1115567/1‑35 (MQ=255)
                 caaacaaCACAAGCCAACCGACAATAGTGACAATc                   >  1:1934285/1‑35 (MQ=255)
                  aaacaaCACAAGCCAACCGACAATAGTGACAATCa                  >  1:15619986/1‑35 (MQ=255)
                  aaacaaCACAAGCCAACCGACAATAGTGACAATCa                  >  1:14265644/1‑35 (MQ=255)
                  aaacaaCACAAGCCAACCGACAATAGTGACAATCa                  >  1:2929642/1‑35 (MQ=255)
                   aacaacACAAGCCAACCGACAATAGTGACAATCAc                 >  1:3812392/1‑35 (MQ=255)
                    acaacaCAAGCCAACCGACAATAGTGACAATCACt                >  1:3345848/1‑35 (MQ=255)
                    acaacaCAAGCCAACCGACAATAGTGACAATCACt                >  1:10064513/1‑35 (MQ=255)
                     caacaCAAGCCAACCGACAATAGTGACAATCACTa               >  1:8166092/1‑35 (MQ=255)
                     caacaCAAGCCAACCGACAATAGTGACAATCACTa               >  1:17189700/1‑35 (MQ=255)
                      nacacAAGCCAACCGACAATAGTGACAATCACTAc              >  1:13840071/2‑35 (MQ=255)
                      aacaCAAGCCAACCGACAATAGTGACAATCACTAc              >  1:6375249/1‑35 (MQ=255)
                       acacAAGCCAACCGACAATAGTGACAATCACTACa             >  1:16404412/1‑35 (MQ=255)
                       acacAAGCCAACCGACAATAGTGACAATCACTACa             >  1:14504442/1‑35 (MQ=255)
                        cacaAGCCAACCGACAATAGTGACAATCACTACAt            >  1:14877043/1‑35 (MQ=255)
                         caaccccccCCGACAATAGTGACAATCACTACAtt           >  1:7447060‑M1/10‑35 (MQ=255)
                          aaccccccCCGACAATAGTGACAATCACTACATTc          >  1:786345‑M1/9‑35 (MQ=255)
                           cccccccCCGACAATAGTGACAATCACTACATTCt         >  1:10082290‑M1/8‑35 (MQ=255)
                           accccccCCGACAATAGTGACAATCACTACATTCt         >  1:15157728‑M1/8‑35 (MQ=255)
                           aaGCCAACCGACAATAGTGACAATCACTACATTCt         >  1:17338606/1‑35 (MQ=255)
                           aaGCCAACCGACAATAGTGACAATCACTACATTCt         >  1:19534359/1‑35 (MQ=255)
                            aGCCAACCGACAATAGTGACAATCACTACATTCTg        >  1:17222618/1‑35 (MQ=255)
                             gCCAACCGACAATAGTGACAATCACTACATTCTgg       >  1:4501616/1‑35 (MQ=255)
                             cccccCCGACAATAGTGACAATCACTACATTCTgg       >  1:9126804‑M1/6‑35 (MQ=255)
                              ccccCCGACAATAGTGACAATCACTACATTCTGGa      >  1:5797897‑M1/5‑35 (MQ=255)
                              ccccCCGACAATAGTGACAATCACTACATTCTGGa      >  1:4088878‑M1/5‑35 (MQ=255)
                              ccAACCGACAATAGTGACAATCACTACATTCTGGa      >  1:6022047/1‑35 (MQ=255)
                              ccAACCGACAATAGTGACAATCACTACATTCTGGa      >  1:15335032/1‑35 (MQ=255)
                               cccCCGACAATAGTGACAATCACTACATTCTGGaa     >  1:11897271‑M1/4‑35 (MQ=255)
                               cAACCGACAATAGTGACAATCACTACATTCTGGaa     >  1:7419071/1‑35 (MQ=255)
                               cAACCGACAATAGTGACAATCACTACATTCTGGaa     >  1:13343488/1‑35 (MQ=255)
                               cAACCGACAATAGTGACAATCACTACATTCTAGaa     >  1:17818208/1‑35 (MQ=255)
                               cAACCGACAATAGTGACATCACTACATTCTGGAac    >  1:2559451/1‑35 (MQ=38)
                                ccCCGACAATAGGGACAATCACTACATTCTGGAac    >  1:10951581‑M1/3‑35 (MQ=255)
                                aaCCGACAATAGTGACAATCACTACATTCTGGAac    >  1:10855488/1‑35 (MQ=255)
                                aaCCGACAATAGTGACAATCACTACATTCTGGAac    >  1:237818/1‑35 (MQ=255)
                                 cCCGACAATAGTGACAATCACTACATTCTGGAact   >  1:3275219‑M1/2‑35 (MQ=255)
                                 aCCGACAATAGTGACAATCACTACATTCTGGAact   >  1:16695674/1‑35 (MQ=255)
                                  CCGACAATAGTGACAATCACTACATTCTGGAactt  >  1:2734520‑M1/1‑35 (MQ=255)
                                  CCGACAATAGTGACAATCACTACATTCTGGAactt  >  1:12128564‑M1/1‑35 (MQ=255)
                                  |                                  
CAGGTTGGGCAGAAAGACAAACAACACAAGCCAACCGACAATAGTGACAATCACTACATTCTGGAACTT  >  REL606/1199761‑1199829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.