Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,847,252 | 1 | .→A | 1.0% | 2.2 ‑1.5 ‑0.0 | 209 | coding (3371/3543 nt) | recB | exonuclease V (RecBCD complex), beta subunit |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (2/0): ref base (95/112): total (97/112) | ||||||||||
Fisher's exact test strand distribution p-value = 2.14e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.39e-01 |
Only 100 of 237 total aligned reads displayed.
AAAGTGACGATCATAGTCGTAATCAGCAATGCGAT‑GGCGCAGATAACGATGCAGCGCCAGGGTATAAAG > REL606/2847218‑2847286 | aaaGTGACGATCATAGTCGTAATCAGCAATTCGAt > 1:10003850/1‑35 (MQ=255) aaaGTGACGATCATAGTCGTAATCAGCAATGCGAt > 1:667230/1‑35 (MQ=255) aaaGTGACGATCATAGTCGTAATCAGCAATGCGAt < 1:6039144/35‑1 (MQ=255) aaaGTGACGATCATAGTCGTAATCAGCAATGCGAt > 1:19909370/1‑35 (MQ=255) aaaGTGACGATCATAGTCGTAATCAGCAATGCGAt < 1:19732975/35‑1 (MQ=255) aaGTGACGATCATAGTCGTAATCAGCAATGCGAT‑g < 1:2242049/35‑1 (MQ=255) aGTGACGATCATAGTCGTAATCAGCAATGCGAT‑gg < 1:10504658/35‑1 (MQ=255) aGTGACGATCATAGTCGTAATCAGCAATGCGAT‑gg > 1:17827915/1‑35 (MQ=255) gTGACGATCATAGTCGTAATCAGCAATGCGAT‑Ggc > 1:15481398/1‑35 (MQ=255) gTGACGATCATAGTCGTAATCAGCAATGCGAT‑Ggc < 1:13038652/35‑1 (MQ=255) tGACGATCATAGTCGTAATCAGCAATGCGAT‑Ggcg > 1:9719378/1‑35 (MQ=255) tGACGATCATAGTCGTAATCAGCAATGCGAT‑Ggcg > 1:4188421/1‑35 (MQ=255) tGACGATCATAGTCGTAATCAGCAATGCGAT‑Ggcg > 1:2699291/1‑35 (MQ=255) tGACGATCATAGTCGTAATCAGCAATGCGAT‑Ggcg < 1:20410707/35‑1 (MQ=255) tGACGATCATAGTCGTAATCAGCAATGCGAT‑Ggcg > 1:14796892/1‑35 (MQ=255) gACGATCATAGTCGTAATCAGCAATGCGAT‑Ggcgc > 1:9459188/1‑35 (MQ=255) gACGATCATAGTCGTAATCAGCAATGCGAT‑Ggcgc < 1:8407569/35‑1 (MQ=255) gACGATCATAGTCGTAATCAGCAATGCGAT‑Ggcgc < 1:686298/35‑1 (MQ=255) gACGATCATAGTCGTAATCAGCAATGCGAT‑Ggcgc > 1:6357415/1‑35 (MQ=255) actaTCATAGTCGTAATCAGCAATGCGAT‑GGCGCa > 1:8514323/4‑35 (MQ=255) aCGATCATAGTCGTAATCAGCAATGCGAT‑GGCGCa < 1:166202/35‑1 (MQ=255) aCGATCATAGTCGTAATCAGCAATGCGAT‑GGCGCa > 1:15191230/1‑35 (MQ=255) cGATCATAGTCGTAATCAGCAATGCGAT‑GGCGCAg < 1:17462844/35‑1 (MQ=255) cGATCATAGTCGTAATCAGCAATGCGAT‑GGCGCAg > 1:4379689/1‑35 (MQ=255) cGATCATAGTCGTAATCAGCAATGCGAT‑GGCGCAg > 1:12147678/1‑35 (MQ=255) cGATCATAGTCGTAATCAGCAATGCGAT‑GGCGCAg > 1:14723747/1‑35 (MQ=255) gATCATAGTCGTAATCAGCAATGCGAT‑GGCGCAGa < 1:16440451/35‑1 (MQ=255) gATCATAGTCGTAATCAGCAATGCGAT‑GGCGCAGa > 1:10686192/1‑35 (MQ=255) aTCATAGTCGTAATCAGCAATGCGAT‑GGCGCAGAt < 1:10212342/35‑1 (MQ=255) tCATAGTCGTAATCAGCAATGCGAT‑GGCGCAGATa > 1:3105104/1‑35 (MQ=255) tCATAGTCGTAATCAGCAATGCGAT‑GGCGCAGATa < 1:1627146/35‑1 (MQ=255) cATATTCGTAATCAGCAATGCGAT‑GGCGCAGATaa > 1:15726712/1‑35 (MQ=255) cATAGTCGTAATCAGCAATGCGAT‑GGCGCAGATaa < 1:14496646/35‑1 (MQ=255) cATAGTCGTAATCAGCAATGCGAT‑GGCGCAGATaa < 1:20332772/35‑1 (MQ=255) cATAGTCGTAATCAGCAATGCGAT‑GGCGCAGATaa < 1:11743291/35‑1 (MQ=255) aTAGTCGTAATCAGCAATGCGAT‑GGCGCAGATAAn < 1:18340812/35‑1 (MQ=255) aTAGTCGTAATCAGCAATGCGAT‑GGCGCAGATAAc > 1:5771924/1‑35 (MQ=255) aTAGTCGTAATCAGCAATGCGAT‑GGCGCAGATAAc < 1:14975856/35‑1 (MQ=255) tAGTCGTAATCAGCAATGCGAT‑GGCGCAGATAACg < 1:7358116/35‑1 (MQ=255) tAGTCGTAATCAGCAATGCGAT‑GGCGCAGATAACg > 1:13585393/1‑35 (MQ=255) tAGTCGTAATCAGCAATGCGAT‑GGCGCAGATAACg < 1:2500755/35‑1 (MQ=255) tAGTCGTAATCAGCAATGCGAT‑GGCGCAGATAACg < 1:13161667/35‑1 (MQ=255) gcacGTAATCAGCAA‑GCGATATACGCAGATAACGa > 1:19741412/4‑35 (MQ=1) aGTCGTAATCAGCAATGCGAT‑GGCGCAGATAACGa < 1:4882409/35‑1 (MQ=255) aGTCGTAATCAGCAATGCGAT‑GGCGCAGATAACGa < 1:7715741/35‑1 (MQ=255) aGTCGTAATCAGCAATGCGAT‑GGCGCAGATAACGa > 1:12648565/1‑35 (MQ=255) gTCGTAATCAGCAATGCGAT‑GGCGCAGATAACGAt > 1:10100531/1‑35 (MQ=255) gTCGTAATCAGCAATGCGAT‑GGCGCAGATAACGAt < 1:19017272/35‑1 (MQ=255) gTCGTAATCAGCAATGCGAT‑GGCGCAGATAACGAt < 1:654420/35‑1 (MQ=255) cacGTAATCAGCAA‑GCGATATACGCAGATAACGAt > 1:11665264/3‑35 (MQ=1) tCGTAATCAGCAATGCGAT‑GGCGCAGATAACGATg < 1:18612895/35‑1 (MQ=255) tCGTAATCAGCAATGCGAT‑GGCGCAGATAACGATg < 1:8657266/35‑1 (MQ=255) tCGTAATCAGCAATGCGAT‑GGCGCAGATAACGATg < 1:11913821/35‑1 (MQ=255) cGTAATCAGCAATGCGAT‑GGCGCAGATAACGATGc > 1:921250/1‑35 (MQ=255) cGTAATCAGCAATGCGAT‑GGCGCAGATAACGATGc > 1:18843682/1‑35 (MQ=255) cGTAATCAGCAATGCGAT‑GGCGCAGATAACGATGc > 1:8885685/1‑35 (MQ=255) cGTAATCAGCAATGCGAT‑GGCGCAGATAACGATGc < 1:12076036/35‑1 (MQ=255) gTAATCAGCAATGCGAT‑GGCGCAGATAACGATGCa < 1:16845259/35‑1 (MQ=255) gTAATCAGCAATGCGAT‑GGCGCAGATAACGATGCa < 1:3384676/35‑1 (MQ=255) gTAATCAGCAATGCGAT‑GGCGCAGATAACGATGCa > 1:3853917/1‑35 (MQ=255) gTAATCAGCAATGCGAT‑GGCGCAGATAACGATGCa < 1:16927060/35‑1 (MQ=255) gTAATCAGCAATGCGAT‑GGCGCAGATAACGATGCa < 1:4937063/35‑1 (MQ=255) gTAATCAGCAATGCGAT‑GGCGCAGATAACGATGCa < 1:12259927/35‑1 (MQ=255) gTAATCAGCAATGCGAC‑GGCGCAGATAACGATGCa > 1:6986239/1‑35 (MQ=255) tAATCAGCAATGCGAT‑GGCGCAGATAACGATGCAg > 1:10844825/1‑35 (MQ=255) tAATCAGCAATGCGAT‑GGCGCAGATAACGATGCAg < 1:16062913/35‑1 (MQ=255) tAATCAGCAATGCGAT‑GGCGCAGATAACGATGCAg < 1:18269266/35‑1 (MQ=255) aaTCAGCAATGCGAT‑GGCGCAGATAACGATGCacc < 1:7119669/35‑3 (MQ=255) aaTCAGCAATGCGAT‑GGCGCAGATAACGATGCAgc < 1:20531193/35‑1 (MQ=255) aaTCAGCAATGCGAT‑GGCGCAGATAACGATGCAgc < 1:7788743/35‑1 (MQ=255) aTCAGCAATGCGAT‑GGCGCAGATAACGATGCAgcg > 1:4023235/1‑35 (MQ=255) aTCAGCAATGCGAT‑GGCGCAGATAACGATGCAgcg > 1:12625513/1‑35 (MQ=255) tCAGCAATGCGAT‑GGCGCAGATAACGATGCAgcgc > 1:2155801/1‑35 (MQ=255) tCAGCAATGCGAT‑GGCGCAGATAACGATGCAgcgc < 1:12885743/35‑1 (MQ=255) cAGCAATGCGAT‑GGCGCAGATAACGATGCAGCGcc > 1:1911670/1‑35 (MQ=255) cAGCAATGCGAT‑GGCGCAGATAACGATGCAGCGcc < 1:8791289/35‑1 (MQ=255) cAGCAATGCGAT‑GGCGCAGATAACGATGCAGCGcc > 1:15115457/1‑35 (MQ=255) cAGCAATGCGAT‑GGCGCAGATAACGATGCAGCGcc < 1:14370769/35‑1 (MQ=255) aGCAATGCGAT‑GGCGCAGATAACGATGCAGCGCCa > 1:13997909/1‑35 (MQ=255) aGCAATGCGAT‑GGAGCAGATAACGATGCAGCGcct < 1:5662884/35‑2 (MQ=255) gCAATGCGAT‑GGCGCAGATAACGATGCAGCGCCAg < 1:8981897/35‑1 (MQ=255) gCAATGCGAT‑GGCGCAGATAACGATGCAGCGCCAg < 1:14135305/35‑1 (MQ=255) gCAATGCGAT‑GGCGCAGATAACGACGCAGCGCCAg < 1:9587978/35‑1 (MQ=255) gCAATGAGAT‑GGCGCAGATAACGATGCAGCGCCAg < 1:17175493/35‑1 (MQ=255) cAATGCGAT‑GGCGCAGATAACGATGCAGCGCCAgg < 1:8056761/35‑1 (MQ=255) cAATGCGAT‑GGCGCAGATAACGATGCAGCGCCAgg > 1:18708/1‑35 (MQ=255) cAATGCGAT‑GGCGCAGATAACGATGCAGCGCCAgg < 1:17708488/35‑1 (MQ=255) cAATGCGAT‑GGCGCAGATAACGATGCAGCGCCAgg < 1:20208967/35‑1 (MQ=255) cAATGCGAT‑GGCGCAGATAACGATGCAGCGCCAgg < 1:1623596/35‑1 (MQ=255) aaTGCGAT‑GGCGCAGATAACGATGCAGCGCCAggg > 1:14064001/1‑35 (MQ=255) aaTGCGAT‑GGCGCAGATAACGATGCAGCGCCAggg < 1:11507775/35‑1 (MQ=255) tGCGAT‑GGCGCAGATAACGATGCAGCGCCAGGGta > 1:11110575/1‑35 (MQ=255) ggCGAT‑GGCGCAGATAACGATGCAGCGCCAGGGta < 1:19563508/34‑1 (MQ=255) gCGAT‑GGCGCAGATAACGATGCAGCGCCAGGGtat < 1:1568964/35‑1 (MQ=255) cGAT‑GGCGCAGATAACGATGCAGCGCCAGGGcata > 1:3927051/1‑35 (MQ=255) aT‑GGCGCAGATAACGATGCAGCGCCAGGGTATaaa < 1:4513023/35‑1 (MQ=255) aT‑GGCGCAGATAACGATGCAGCGCCAGGGTATaaa > 1:17953210/1‑35 (MQ=255) t‑GGCGCAGATAACGATGCAGCGCCAGTGTATAAAg > 1:4903539/1‑35 (MQ=255) t‑GGCGCAGATAACGATGCAGCGCCAGGGTATAAAg > 1:7059055/1‑35 (MQ=255) t‑GGCGCAGATAACGATGCAGCGCCAGGGTATAAAg > 1:2865473/1‑35 (MQ=255) | AAAGTGACGATCATAGTCGTAATCAGCAATGCGAT‑GGCGCAGATAACGATGCAGCGCCAGGGTATAAAG > REL606/2847218‑2847286 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |