New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1349559 =56 (0.540)6 (0.060) 3/46 NT 8.3% intergenic (‑151/+217) fabI/ycjD enoyl‑(acyl carrier protein) reductase/hypothetical protein
?REL606 = 2307173 79 (0.800)coding (767/1218 nt) yfaW predicted enolase

AAAGCGCCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1349571‑1349559
‑‑‑‑‑‑‑‑‑‑‑‑cCGCCACAGCAGTATGAAAGTTATCGCGAACTGAA  <  REL606/2307173‑2307140
                                               
AAAGCGCCCCCCCCGCCACAGCAGTATGAAAGTTA              <  1:8404970/35‑1
  aggGCCCCCCCCGCCACAGCAGTATGAAAGTTATC            <  1:8476097/32‑1
  AGCGCCCCCCCCGCCACAGCAGTATGAAAGTTATC            <  1:3508480/35‑1
   ggtCCCCCCCCGCCACAGCAGTATGAAAGTTATCG           <  1:17152807/32‑1
   gaGCCCCCCCCGCCACAGCAGTATGAAAGTTATCG           <  1:19680195/33‑1
     GCCCCCCCCGCCACAGCAGTATGAAAGTTATCGCG         <  1:11827569/35‑1
      tCCCCCCCGCCACAGCAGTATGAAAGTTATCGCGA        <  1:4298799/34‑1
       CCCTCCCGCCACAGCAGTATGAAAGTTATCGCGAA       <  1:7637761/35‑1
       CCCCCCCGCCACAGCAGTATGAAAGTTATCGCGAA       <  1:14931248/35‑1
       CCCCCCCGCCACAGCAGTATGAAAGTTATCGCGAA       <  1:11627311/35‑1
         CCCCCGCCACAGCAGTATGAAAGTTATCGCGAACT     <  1:15426573/35‑1
         CCCCCGCCACAGCAGTATGAAAGTTATCGCGAACT     <  1:13597784/35‑1
          CCCCGCCACAGCAGTATGAAAGTTATCGCGAACTG    <  1:17416080/35‑1
          CCCCGCCACAGCAGTATGAAAGTTATCGCGAACTG    <  1:13914300/35‑1
           CCCGCCACAGCAGTATGAAAGTTATCGCGAACTGA   <  1:3650089/35‑1
           CCCGCCACAGCAGTATGAAAGTTATCGCGAACTGA   <  1:7510409/35‑1
            CCGCCACAGCAGTATGAAAGTTATCGCGAACTGAA  >  1:19508312/1‑35
            CCGCCACAGCAGTATGAAAGTTATCGCGAACTGAA  >  1:19827536/1‑35
            CCGCCACAGCAGTATGAAAGTTATCGCGAACTGAA  >  1:7694183/1‑35
            CCGCCACAGCAGTATGAAAGTTATCGCGAACTGAA  >  1:7971881/1‑35
                                               
AAAGCGCCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1349571‑1349559
‑‑‑‑‑‑‑‑‑‑‑‑cCGCCACAGCAGTATGAAAGTTATCGCGAACTGAA  <  REL606/2307173‑2307140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.