New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1332666 =72 (0.700)5 (0.060) 4/36 NT 7.6% coding (440/975 nt) cysB DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding
?REL606 = 4432999 68 (0.880)intergenic (‑97/‑213) ppa/ytfQ inorganic pyrophosphatase/predicted sugar transporter subunit: periplasmic‑binding component of ABC superfamily

Only 100 of 155 total aligned reads displayed.

ATGTCTTCGCTTGTTTTCGTCTTCATTTTCCTTTTTCGCCAATTTTAAGACGGTATACAGAGCAGGAAA  >  REL606/4432965‑4433033
                                  |                                  
aTGTCTTCGCTTGTTTTCGTCTTCATTTTCCtttt                                    >  1:149794/1‑35 (MQ=255)
aTGTCTTCGCTTGTTTTCGTCTTCATTTTCCtttt                                    >  1:19546009/1‑35 (MQ=255)
aTGTCTTCGCTTGTTTTCGTCTTCATTTTCCtttt                                    <  1:2824778/35‑1 (MQ=255)
aTGTCTTCGCTTGTTTTCGTCTTCATTTTCCtttt                                    <  1:2905124/35‑1 (MQ=255)
aTGTCTTCGCTTGTTTTCGTCTTCATTTTCCtttt                                    <  1:13067177/35‑1 (MQ=255)
aTGTCTTCGCTTGTTTTCGTCTTCATTTTCCtttt                                    >  1:6112245/1‑35 (MQ=255)
aTGTCTTCGCTTGTTTTCGTCTTCATTTTCCtttt                                    <  1:16666558/35‑1 (MQ=255)
 tGTCTTCGCTTGTTTTCGTCTTCATTTTCCTTTTt                                   >  1:9487985‑M2/1‑34 (MQ=255)
 tGTCTTCGCTTGTTTTCGTCTTCATTTTCCTTTTt                                   <  1:8652328‑M2/35‑2 (MQ=255)
 tGTCTTCGCTTGTTTTCGTCTTCATTTTCCTTTTt                                   >  1:5011474‑M2/1‑34 (MQ=255)
  gTCTTCGCTTGTTTTCGTCTTCATTTTCCTTTTtc                                  <  1:8045780‑M2/35‑3 (MQ=255)
  gTCTTCGCTTGTTTTCGTCTTCATTTTCCTTTTtc                                  >  1:2894191‑M2/1‑33 (MQ=255)
  gTCTTCGCTTGTTTTCGTCTTCATTTTCATTTTtc                                  >  1:12422934‑M2/1‑33 (MQ=255)
   tCTTCGCTTGTTTTCGTCTTCATTTTCCTTTTtcg                                 >  1:3561084‑M2/1‑32 (MQ=255)
   tCTTAGCTTGTTTTCGTCTTCATTTTCCTTTTtcg                                 >  1:17638866‑M2/1‑32 (MQ=255)
    cTTCGCTTGTTTTCGTCTTCATTTTCCTTTTtcgc                                >  1:16395471‑M2/1‑31 (MQ=255)
    cTTCGCTTGTTTTCGTCTTCATTTTCCTTTTtcgc                                >  1:19952737‑M2/1‑31 (MQ=255)
    cTTCGCTTGTTTTCGTCTTCATTTTCCTTTTtcgc                                >  1:2201208‑M2/1‑31 (MQ=255)
     ttCGCTTGTTTTCGTCTTCATTTTCCTTTTtcgcc                               >  1:14906554‑M2/1‑30 (MQ=255)
     ttCGCTTGTTTTCGTCTTCATTTTCCTTTTtcgcc                               >  1:10245122‑M2/1‑30 (MQ=255)
     ttCGCTTGTTTTCGTCTTCATTTTCCTTTTtcgcc                               <  1:6264497‑M2/35‑6 (MQ=255)
     ttCGCTTGTTTTCGTCTTCATTTTCCTTTTtcgcc                               >  1:16246215‑M2/1‑30 (MQ=255)
     ttCGCTTGTTTTCGTCTTCATTTTCCTTTTtcgcc                               <  1:6268450‑M2/35‑6 (MQ=255)
      tCGCTTGTTTTCGTCTTCATTTTCCTTTTtcgcca                              >  1:1967099‑M2/1‑29 (MQ=255)
      tCGCTTGTTTTCGTCTTCATTTTCCTTTTtcgcca                              >  1:3776144‑M2/1‑29 (MQ=255)
      tCGCTTGTTTTCGTCTTCATTTTCCTTTTtcgcca                              <  1:6850604‑M2/35‑7 (MQ=255)
       cGCTTGTTTTCGTCTTCATTTTCCTTTTTCGCCaa                             >  1:18656609/1‑35 (MQ=255)
        gCTTGTTTTCGTCTTCATTTTCCTTTTTCGCCAAt                            >  1:1578865/1‑35 (MQ=255)
         cTTGTTTTCGTCTTCATTTTCCTTTTTCGCCAAtt                           <  1:5340038/35‑1 (MQ=255)
         cTTGTTTTCGTCTTCATTTTCCTTTTTCGCCAAtt                           >  1:702704/1‑35 (MQ=255)
          ttGTTTTCGTCTTCATTTTCCTTTTTCGCCAAttt                          >  1:12885177/1‑35 (MQ=255)
          ttGTTTTCGTCTTCATTTTCCTTTTTCGCCAAttt                          >  1:4436889/1‑35 (MQ=255)
          ttGTTTTCGTCTTCATTTTCCTTTTTCGCCAAttt                          <  1:6892993/35‑1 (MQ=255)
           tGTTTTCGTCTTCATTTTCCTTTTTCGCCAAtttt                         >  1:8702413/1‑35 (MQ=255)
           tGTTTTCGTCTTCATTTTCCTTTTTCGCCAAtttt                         <  1:13222513/35‑1 (MQ=255)
           tGTTTTCGTCTTCATTTTCCTTTTTCGCCAAtttt                         <  1:19005823/35‑1 (MQ=255)
           tGTTTTCGTCTTCATTTTCCTTTTTCGCCAAtttt                         <  1:11620146/35‑1 (MQ=255)
            gTTTTCGTCTTCATTTTCCTTTTTCGCCAATTTTa                        <  1:12511616/35‑1 (MQ=255)
            gTTTTCGTCTTCATTTTCCTTTTTCGCCAATTTTa                        >  1:2267422/1‑35 (MQ=255)
            gTTTTCGTCTTCATTTTCCTTTTTCGCCAATTTTa                        >  1:9684049/1‑35 (MQ=255)
            gTTTTCGTCTTCATTTTCCTTTTTCGCCAATTTTa                        <  1:17164902/35‑1 (MQ=255)
             ttttCGTCTTCATTTTCCTTTTTCGCCAATTTTaa                       >  1:2829541/1‑35 (MQ=255)
             ttttCGTCTTCATTTTCCTTTTTCGCCAATTTTaa                       <  1:1563730/35‑1 (MQ=255)
              tttCGTCTTCATTTTCCTTTTTCGCCAATTTTAAg                      >  1:11693945/1‑35 (MQ=255)
              tttCGTCTTCATTTTCCTTTTTCGCCAATTTTAAg                      >  1:15219046/1‑35 (MQ=255)
              tttCGTCTTCATTTTCCTTTTTCGACAATTTTAAg                      <  1:2554987/35‑1 (MQ=255)
               ttCGTCTTCATTTTCCTTTTTCGCCAATTTTAAGa                     >  1:15965782/1‑35 (MQ=255)
                 cGTCTTCATTTTCCTTTTTCGCCAATTTTAAGACg                   <  1:5352671/35‑1 (MQ=255)
                 cGTCTTCATTTTCCTTTTTCGCCAATTTTAAGACg                   <  1:18656678/35‑1 (MQ=255)
                 cGTCTTCATTTTCCTTTTTCGCCAATTTTAAGACg                   >  1:1417170/1‑35 (MQ=255)
                 cGTCTTCATTTTCCTTTTTCGCCAATTTTAAGACg                   >  1:19467181/1‑35 (MQ=255)
                  gTCTTCATTTTCCTTTTTCGCCAATTTTAAGACgg                  <  1:2185691/35‑1 (MQ=255)
                  gTCTTCATTTTCCTTTTTCGCCAATTTTAAGACgg                  >  1:793994/1‑35 (MQ=255)
                  gTCTTCATTTTCCTTTTTCGCCAATTTTAAGACgg                  <  1:19213841/35‑1 (MQ=255)
                   tCTTCATTTTCCTTTTTCGCCAATTTTAAGACGGt                 >  1:20564441/1‑35 (MQ=255)
                   tCTTCATTTTCCTTTTTCGCCAATTTTAAGACGGt                 >  1:2082833/1‑35 (MQ=255)
                   tCTTCATTTTCCTTTTTCGCCAATTTTAAGACGGt                 <  1:12744416/35‑1 (MQ=255)
                   tCTTCATTTTCCTTTTTCGCCAATTTTAAGACGGt                 <  1:14388789/35‑1 (MQ=255)
                    cTTCATTTTCCTTTTTCGCCAATTTTAAGACGGta                >  1:8707207/1‑35 (MQ=255)
                    cTTCATTTTCCTTTTTCGCCAATTTTAAGACGGta                <  1:14139224/35‑1 (MQ=255)
                    cTTCATTTTCCTTTTTCGCCAATTTTAAGACGGta                >  1:1271271/1‑35 (MQ=255)
                     ttCATTTTCCTTTTTCGCCAATTTTAAGACGGtat               >  1:7490293/1‑35 (MQ=255)
                     ttCATTTTCCTTTTTCGCCAATTTTAAGACGGtat               >  1:10145872/1‑35 (MQ=255)
                     ttCATTTTCCTTTTTCGCCAATTTTAAGACGGtat               <  1:15144309/35‑1 (MQ=255)
                     ttCATTTTCCTTTTTCGCCAATTTTAAGACGGtat               >  1:17287852/1‑35 (MQ=255)
                      tCATTTTCCTTTTTCGCCAATTTTAAGACGGtata              >  1:13645015/1‑35 (MQ=255)
                      tCATTTTCCTTTTTCGCCAATTTTAAGACGGtata              >  1:6428069/1‑35 (MQ=255)
                      tCATTTTCCTTTTTCGCCAATTTTAAGACGGtata              >  1:5134255/1‑35 (MQ=255)
                       cATTTTCCTTTTTCGCCAATTTTAAGACGGTATAc             <  1:15410267/35‑1 (MQ=255)
                       cATTTTCCTTTTTCGCCAATTTTAAGACGGTATAc             <  1:16816236/35‑1 (MQ=255)
                       cATTTTCCTTTTTCGCCAATTTTAAGACGGTATAc             <  1:16847367/35‑1 (MQ=255)
                        aTTTTCCTTTTTCGCCAATTTTAAGACGGTATACa            <  1:8904466/35‑1 (MQ=255)
                        aTTTTCCTTTTTCGCCAATTTTAAGACGGTATACa            <  1:11217857/35‑1 (MQ=255)
                        aTTTTCCTTTTTCGCCAATTTTAAGACGGTATACa            >  1:14289621/1‑35 (MQ=255)
                        aTTTTCCTTTTTCGCCAATTTTAAGACGGTATACa            <  1:16526167/35‑1 (MQ=255)
                        aTTTTCCTTTTTCGCCAATTTTAAGACGGTATACa            <  1:20411754/35‑1 (MQ=255)
                        aTTTTCCTTTTTCGCCAATTTTAAGACGGTATACa            >  1:20192960/1‑35 (MQ=255)
                         ttttCCTTTTTCGCCAATTTTAAGACGGTATACag           <  1:9513369/35‑1 (MQ=255)
                         ttttCCTTTTTCGCCAATTTTAAGACGGTATACag           <  1:3410754/35‑1 (MQ=255)
                          tttCCTTTTTCGCCAATTTTAAGACGGTATACaga          <  1:19142762/35‑1 (MQ=255)
                           ttCCTTTTTCGCCAATTTTAAGACGGTATACagag         <  1:6828305/35‑1 (MQ=255)
                           ttCCTTTTTCGCCAATTTTAAGACGGTATACagag         <  1:1801647/35‑1 (MQ=255)
                            tCCTTTTTCGCCAATTTTAAGACGGTATACAGAGc        >  1:4251023/1‑35 (MQ=255)
                            tCCGTTTtcgccacagaagcgctgcatctgtatga        >  1:17768240‑M2/1‑7 (MQ=255)
                             ccTTTTTCGCCAATTTTAAGACGGTATACAGAGCa       >  1:916131/1‑35 (MQ=255)
                             ccTTTTTCGCCAATTTTAAGACGGTATACAGAGCa       >  1:18942575/1‑35 (MQ=255)
                             ccGTTTtcgccacagaagcgctgcatctgtatgaa       >  1:8456915‑M2/1‑6 (MQ=255)
                              cTTTTTCGCCAATTTTAAGACGGTATACAGAGCAg      <  1:10962345/35‑1 (MQ=255)
                              cTTTTTCGCCAATTTTAAGACGGTATACAGAGCAg      >  1:13401520/1‑35 (MQ=255)
                               tttttCGCCAATTTTAAGACGGTATACAGAGCAgg     <  1:16712725/35‑1 (MQ=255)
                               tttttCGCCAATTTTAAGACGGTATACAGAGCAgg     <  1:4723595/35‑1 (MQ=255)
                                ttttcgccacagaagcgctgcatctgtatgaagat    >  1:14715296‑M2/1‑3 (MQ=255)
                                ttttcgccacagaagcgctgcatctgtatgaagat    >  1:6690432‑M2/1‑3 (MQ=255)
                                ttttCGCCAATTTTAAGACGGTATACAGAGCAGGa    <  1:15769210/35‑1 (MQ=255)
                                ttttCGCCAATTTTAAGACGGTATACAGAGCAGGa    <  1:15907161/35‑1 (MQ=255)
                                 tttCGCCAATTTTAAGACGGTATACAGAGCAGGaa   <  1:18264042/35‑1 (MQ=255)
                                 tttCGCCAATTTTAAGACGGTATACAGAGCAGGaa   <  1:17754976/35‑1 (MQ=255)
                                  ttcgccacagaagcgctgcatctgtatgaagattt  >  1:17476967‑M2/1‑1 (MQ=255)
                                  ttcgccacagaagcgctgcatctgtatgaagattt  >  1:17214944‑M2/1‑1 (MQ=255)
                                  ttCGCCAATTTTAAGACGGTATACAGAGCAGGaaa  >  1:4793120/1‑35 (MQ=255)
                                  |                                  
ATGTCTTCGCTTGTTTTCGTCTTCATTTTCCTTTTTCGCCAATTTTAAGACGGTATACAGAGCAGGAAA  >  REL606/4432965‑4433033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.