New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2944816 | 47 (0.460) | 22 (0.210) | 8/48 | NT | 22.6% | coding (261/660 nt) | rpiA | ribose‑5‑phosphate isomerase A |
? | REL606 | 3912264 = | 104 (1.010) | intergenic (+44/‑96) | ilvL/ilvG | ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit |
CGCGCCGCCGCCTTTGATCATTTGCATGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2944783‑2944816 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGTTTTTTTTGACCTTAAAAACATAACCG > REL606/3912264‑3912295 CGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGG > 1:10707136/1‑35 CGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGG > 1:15286121/1‑35 CGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGG > 1:17921565/1‑35 GCGCCGCCGCCTTTGATCATTTGCATGTGGCCGGG > 1:5147931/1‑35 GCGCCGCCGCCTTTGATCATTTGCATGTGGCCGGG > 1:7332647/1‑35 CGCCGCCGCCTTTGATCATTTGCATGTGGCCGGGG > 1:1757689/1‑35 GCCGCCGCCTTTGATCATTTGCATGTGGCCGGGGG > 1:8562947/1‑35 CCGCCGCCTTTGATCATTTGCATGTGGCCGGGGGG > 1:20308021/1‑35 GCCGCCTTTGATCATTTGCATGTGGCCGGGGGtgt > 1:6929922/1‑32 GCCGCCTTTGATCATTTGCATGTGGCCGGGGGTTT > 1:9504873/1‑35 GCCGCCTTTGATCATTTGCATGTGGCCGGGGGGTT > 1:2110337/1‑35 CCGCCTTTGATCATTTGCATGTGGCCGGGGGTTTT > 1:10840791/1‑35 CCGCCTTTGATCATTTGCATGTGGCCGGGGGTTTT > 1:11568735/1‑35 CCGCCTTTGATCATTTGCATGTGGCCGGGGGGTTT > 1:15463851/1‑35 CGCCTTTGATCATTTGCATGTGGCCGGGGGTTTTT > 1:19485750/1‑35 CGCCTTTGATCATTTGCATGTGGCCGGGGGTTTTT > 1:20350798/1‑35 CGCCTTTGATCATTTGCATGTGGCCGGGGGGTTTT > 1:8355659/1‑35 GCCTTTGATCATTTGCATGTGGCCGGGGGGTTTgt > 1:5549709/1‑33 GCCTTTGATCATTTGCATGTGGCCGGGGGGGTTTT > 1:14980932/1‑35 CCTTTGATCATTTGCATGTGGCCGGGGGTTTTTTT > 1:19823674/1‑35 CCTTTGATCATTTGCATGTGGCCGGGGGTTTTTTT > 1:1835831/1‑35 CCTTTGATCATTTGCATGTGGCCGGGGGTTTTTTT > 1:5891842/1‑35 CTTTGATCATTTGCATGTGGCCGGGGGTTTTTTTT > 1:14992251/1‑35 TTTGATCATTTGCATGTGGCCGGGGGTTTTTTTTg > 1:10627130/1‑34 TTTGATCATTTGCATGTGGCCGGGGGTTTTTTTTT > 1:9734919/1‑35 TTTGATCATTTGCATGTGGCCGGGGGGTTTTTctc > 1:4119537/1‑32 TTTGATCATTTGCATGTGGCCGGGGGGTTTTTTTc > 1:1654571/1‑34 TTTGATCATTTGCATGTGGCCGGGGGGTTTTTTTT > 1:3599198/1‑35 TTTGATCATTTGCATGTGGCCGGGGGGTTTTTTTT > 1:12694007/1‑35 TTGATCATTTGCATGTGGCCGGGGGTTTTTTTTTc > 1:10125736/1‑34 TTGATCATTTGCATGTGGCCGGGGGGTTTTTTTTG > 1:5128989/1‑35 tCGGGGGGTTTTTTTTGACCTTAAAAACATAACCG < 1:19708387/34‑1 CGCGCCGCCGCCTTTGATCATTTGCATGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2944783‑2944816 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGTTTTTTTTGACCTTAAAAACATAACCG > REL606/3912264‑3912295 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |