New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 580468 =60 (0.580)16 (0.200) 4/38 NT 16.7% coding (852/3144 nt) cusA copper/silver efflux system, membrane component
?REL606 2715365 = 112 (1.380)coding (1506/2631 nt) alaS alanyl‑tRNA synthetase

Only 100 of 104 total aligned reads displayed.

GCGTTTTTGCCGGATCGCAGGATCACCACCCCGCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/580506‑580468
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccGGATTCCGCATAGAATGGCGTTTGATCCAGCACG  >  REL606/2715365‑2715398
                                                                         
GCGTTTTTGCCGGATCGCAGGATCACCACCCCGCC                                        >  1:3322377/1‑35
 CGTTTTTGCCGGATCGCAGGATCACCACCCCGCCC                                       <  1:14411079/35‑1
 CGTTTTTGCCGGATCGCAGGATCACCACCCCGCCC                                       >  1:2567175/1‑35
 CGTTTTTGCCGGATCGCAGGATCACCACCCCGCCC                                       <  1:3868782/35‑1
  GTTTTTGCCGGATCGCAGGATCACCACCCCGCCCG                                      <  1:14047524/35‑1
  GTTTTTGCCGGATCGCAGGATCACCACCCCGCCCG                                      >  1:13776547/1‑35
  GTTTTTGCCGGATCGCAGGATCACCACCCCGCCCG                                      >  1:15020279/1‑35
  GTTTTTGCCGGATCGCAGGATCACCACCCCGCCCG                                      >  1:2772341/1‑35
  GTTTTTGCCGGATCGCAGGATCACCACCCCGCCCG                                      >  1:7842417/1‑35
  GTTTTTGCCGGATCGCAGGATCACCACCCCGCCCG                                      >  1:1022295/1‑35
   TTTTTGCCGGATCGCAGGATCACCACCCCGCCCGC                                     >  1:492378/1‑35
   TTTTTGCCGGATCGCAGGATCACCACCCCGCCCGC                                     >  1:10560910/1‑35
    TTTTGCCGGATCGCAGGATCACCACCCCGCCCGCC                                    >  1:9027379/1‑35
                        gCCACCCTGCCCGCCGGATTCCGCATAGAATGGCG                <  1:13744069/34‑1
                         CCACCCGGCCCGCCGGATTCCGCATAGAATGGCGT               <  1:19216221/35‑1
                         CCACCCCGCCCGCCGGATTCCGCATAGAATGGCGT               <  1:5311048/35‑1
                         CCACCCCGCCCGCCGGATTCCGCATAGAATGGCGT               <  1:312772/35‑1
                         CCACCCCGCCCGCCGGATTCCGCATAGAATGGCGT               <  1:9347955/35‑1
                          CACCCCGCCCGCCGGATTCCGCATAGAATGGCGTT              <  1:1209694/35‑1
                           ACCCTGCCCGCCGGATTCCGCATAGAATGGCGTTT             <  1:2946741/35‑1
                           ACCCCCCCCGCCGGATTCCGCATAGAATGGCGTTT             <  1:15335802/35‑1
                            CCCTGCCCGCCGGATTCCGCATAGAATGGCGTTTG            <  1:5933957/35‑1
                            CCCTGCCCGCCGGATTCCGCATAGAATGGCGTTTG            <  1:9899918/35‑1
                            CCCCGCCCGCCGGATTCCGCATAGAATGGCGTTTG            <  1:17645476/35‑1
                            CCCCGCCCGCCGGATTCCGCATAGAATGGCGTTTG            <  1:15519318/35‑1
                            CCCCCCCCGCCGGATTCCGCATAGAATGGCGTTTG            <  1:6849337/35‑1
                            CCCCCCCCGCCGGATTCCGCATAGAATGGCGTTTG            <  1:5294180/35‑1
                            CCCCCCCCGCCGGATTCCGCATAGAATGGCGTTTG            <  1:5227141/35‑1
                             CCCGCCCGCCGGATTCCGCATAGAATGGCGTTTGA           <  1:1330127/35‑1
                             CCCGCCCGCCGGATTCCGCATAGAATGGCGTTTGA           <  1:113830/35‑1
                             CCCCCCCGCCGGATTCCGCATAGAATGGCGTTTGA           <  1:3898857/35‑1
                              ctcCCCGCCGGATTCCGCATAGAATGGCGTTTGAT          <  1:19301730/32‑1
                              cgGCCCGCCGGATTCCGCATAGAATGGCGTTTGAT          <  1:17388382/33‑1
                              cccCCCGCCGGATTCCGCATAGAATGGCGTTTGAT          <  1:17487616/32‑1
                              cccCCCGCCGGATTCCGCATAGAATGGCGTTTGAT          <  1:1224119/32‑1
                              cccCCCGCCGGATTCCGCATAGAATGGCGTTTGAT          <  1:6024223/32‑1
                              CCGCCCGCCGGATTCCGCATAGAATGGCGTTTGAT          <  1:16258749/35‑1
                               tcCCCGCCGGATTCCGCATAGAATGGCGTTTGATC         <  1:12938853/33‑1
                               tcCCCGCCGGATTCCGCATAGAATGGCGTTTGATC         <  1:20042682/33‑1
                               tGCCCGCCGGATTCCGCATAGAATGGCGTTTGATC         <  1:20165830/34‑1
                               gcCCCGCCGGATTCCGCATAGAATGGCGTTTGATC         <  1:18860445/33‑1
                               gGCCCGCCGGATTCCGCATAGAATGGCGTTTGATC         <  1:11227907/34‑1
                               ccCCCGCCGGATTCCGCATAGAATGGCGTTTGATC         <  1:4647489/33‑1
                               ccCCCGCCGGATTCCGCATAGAATGGCGTTTGATC         <  1:5855969/33‑1
                               CGCCCGCCGGATTCCGCATAGAATGGCGTTTGATC         <  1:6416229/35‑1
                                cCCCGCCGGATTCCGCATAGAATGGCGTTTGATCa        <  1:18409497/34‑2
                                cCCCGCCGGATTCCGCATAGAATGGCGTTTGATCC        <  1:17370844/34‑1
                                cCCCGCCGGATTCCGCATAGAATGGCGTTTGATCC        <  1:97628/34‑1
                                cCCCGCCGGATTACGCATAGAATGGCGTTTGATCC        <  1:10819188/34‑1
                                 ccaGCCGGATTCCGCATAGAATGGCGTTTGATCCA       <  1:18629294/32‑1
                                 CCCGCCGGATTCCGCATAGAATGGCGTTTGATCCA       <  1:15349871/35‑1
                                  CCGCCGGATTCCGCATAGAATGGCGTTTGATCCAG      >  1:12562830/1‑35
                                  CCGCCGGATTCCGCATAGAATGGCGTTTGATCCAG      <  1:12803509/35‑1
                                  CCGCCGGATTCCGCATAGAATGGCGTTTGATCCAG      >  1:9267522/1‑35
                                  CCGCCGGATTCCGCATAGAATGGCGTTTGATCCAG      <  1:10508322/35‑1
                                  CCGCCGGATTCCGCATAGAATGGCGTTTGATCCAG      <  1:11838784/35‑1
                                  CCGCAGGATTCCGCATAGAATGGCGTTTGATCCAG      <  1:17316052/35‑1
                                   CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC     <  1:6089920/35‑1
                                   CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC     <  1:12347838/35‑1
                                   CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC     <  1:384322/35‑1
                                   CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC     >  1:19577620/1‑35
                                   CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC     <  1:4587456/35‑1
                                   CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC     <  1:18646298/35‑1
                                   CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC     <  1:18453468/35‑1
                                   CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC     <  1:17465616/35‑1
                                   CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC     <  1:17020305/35‑1
                                   CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC     >  1:16977419/1‑35
                                   CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC     >  1:15984446/1‑35
                                   CGCCGGATTCCGCATAGAATGGCGTTTGATCCAGC     <  1:5800177/35‑1
                                    GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA    >  1:4879748/1‑35
                                    GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA    <  1:11887410/35‑1
                                    GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA    >  1:2151161/1‑35
                                    GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA    >  1:7995176/1‑35
                                    GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA    >  1:18736123/1‑35
                                    GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA    >  1:8455224/1‑35
                                    GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA    <  1:16651637/35‑1
                                    GCCGGATTCCGCATAGAATGGCGTTTGATCCAGCA    <  1:978399/35‑1
                                     CCGGATTCCGCATCGAATGGCGTTTGATCCAGCAC   >  1:13930881/1‑35
                                     CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAN   <  1:2180776/35‑1
                                     CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC   >  1:7474163/1‑35
                                     CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC   >  1:10418033/1‑35
                                     CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC   >  1:13980772/1‑35
                                     CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC   >  1:11904949/1‑35
                                     CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC   >  1:3812944/1‑35
                                     CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC   >  1:3568754/1‑35
                                     CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC   <  1:14881725/35‑1
                                     CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC   >  1:19936325/1‑35
                                     CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC   >  1:13181253/1‑35
                                     CCGGATTCCGCATAGAATGGCGTTTGATCCAGCAC   <  1:19316077/35‑1
                                      CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG  <  1:14603145/35‑1
                                      CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG  >  1:9328302/1‑35
                                      CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG  <  1:15108453/35‑1
                                      CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG  >  1:17458818/1‑35
                                      CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG  <  1:18008610/35‑1
                                      CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG  >  1:19030484/1‑35
                                      CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG  <  1:19415006/35‑1
                                      CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG  >  1:12526283/1‑35
                                      CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG  >  1:1250961/1‑35
                                      CGGATTCCGCATAGAATGGCGTTTGATCCAGCACG  >  1:5502800/1‑35
                                      CGGATGCCGCATAGAATGGCGTTTGATCCAGCACG  <  1:8166824/35‑1
                                                                         
GCGTTTTTGCCGGATCGCAGGATCACCACCCCGCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/580506‑580468
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccGGATTCCGCATAGAATGGCGTTTGATCCAGCACG  >  REL606/2715365‑2715398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.