New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 159309734 (0.330)11 (0.130) 6/40 NT 16.5% intergenic (+40/+4) ydeJ/dcp competence damage‑inducible protein A/dipeptidyl carboxypeptidase II
?REL606 4085859 = 83 (0.970)intergenic (+57/‑92) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F

Only 100 of 353 total aligned reads displayed.

AGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAA  >  REL606/4085825‑4085893
                                  |                                  
ttaatcagaccattggtcgagctatcgtggcTggg                                    <  1:18781774‑M1/4‑1 (MQ=255)
tggcctggcgatatctcaggccagccattggtggg                                    >  1:6165689‑M2/35‑35 (MQ=255)
gtgtttctggtgctcgatgcgctcggactggtggg                                    >  1:2173867‑M2/35‑35 (MQ=255)
gaccatgtggtttcttcatcctcagtaaggctggg                                    >  1:680566‑M2/34‑35 (MQ=255)
gaccatgtggtttcttcatcctcagtaaggctggg                                    >  1:4685313‑M2/34‑35 (MQ=255)
gaccatgtggtttcttcatcctcagtaaggctggg                                    >  1:1187472‑M2/34‑35 (MQ=255)
gaccatgtggtttcttcatcctcagtaaggctggg                                    >  1:3618251‑M2/34‑35 (MQ=255)
aGACACCATCCCTGTCTTCCCCCACATGATGTggg                                    >  1:9093314/1‑35 (MQ=255)
aGACACCATCCCTGTCTTCCCCCACATGATGTggg                                    <  1:17594398/35‑1 (MQ=255)
aGACACCATCCCTGTCTTCACCCACATGATGTggg                                    <  1:11563602/35‑1 (MQ=255)
 ttttttgcaaggctatttatggtgcggatgggggg                                   >  1:13559921‑M2/32‑35 (MQ=255)
 tcaaagagttcggcaacaaaggcttccggctgggn                                   >  1:4861133‑M2/33‑35 (MQ=255)
 taatcagaccattggtcgagctatcgtggcTgggg                                   <  1:7914919‑M1/5‑1 (MQ=255)
 ggcctggcgatatctcaggccagccattggtgggg                                   >  1:7738155‑M2/34‑35 (MQ=255)
 gacgcgcagttccctccgcgatggcctggctgggg                                   >  1:12083878‑M2/33‑35 (MQ=255)
 gacgcgcagttccctccgcgatggcctggctgggg                                   >  1:1483987‑M2/33‑35 (MQ=255)
 gACACCATCCCTGTCTTCCCCCACATGATGTgggg                                   >  1:3687861/1‑35 (MQ=255)
  gtttctggtgctcgatgcgctcggactggtggggg                                  >  1:15223736‑M2/33‑35 (MQ=255)
  ccatgtggtttcttcatcctcagtaaggctggggg                                  >  1:10698812‑M2/32‑35 (MQ=255)
  acgcgcagttccctccgcgatggcctggctggggg                                  >  1:1197586‑M2/32‑35 (MQ=255)
   cctggcgatatctcaggccagccattggtgggggg                                 >  1:609670‑M2/32‑34 (MQ=255)
   catgtggtttcttcatcctcagtaaggctgGGGGt                                 >  1:12770353‑M2/31‑35 (MQ=255)
   aaagagttcggcaacaaaggcttccggctgggggg                                 >  1:18428014‑M2/31‑34 (MQ=255)
    tcagaccattggtcgagctatcgtggcTGGGGGtt                                <  1:9177471‑M1/8‑1 (MQ=255)
    tcagaccattggtcgagctatcgtggcTGGGGGtt                                <  1:14000037‑M1/8‑1 (MQ=255)
    tcagaccattggtcgagctatcgtggcTGGGGGtt                                <  1:8010719‑M1/8‑1 (MQ=255)
    atgtggtttcttcatcctcagtaaggctgGGGgta                                >  1:4366898‑M2/30‑34 (MQ=255)
    atgtggtttcttcatcctcagtaaggctgGGGGtt                                >  1:19756615‑M2/30‑35 (MQ=255)
    aagagttcggcaacaaaggcttccggctgGGGGtt                                >  1:16179302‑M2/30‑35 (MQ=255)
     ttgcaaggctatttatggtgcggatggGGGGGttt                               >  1:3771449‑M2/28‑35 (MQ=255)
     tgtggtttcttcatcctcagtaaggctgGGGGttt                               >  1:15621443‑M2/29‑35 (MQ=255)
     tctggtgctcgatgcgctcggactggtggGGGttt                               >  1:12362304‑M2/30‑35 (MQ=255)
     cgcagttccctccgcgatggcctggctggggggtg                               >  1:7444298‑M2/29‑32 (MQ=255)
     cgcagttccctccgcgatggcctggctgGGGGgtt                               >  1:14261561‑M2/29‑35 (MQ=255)
     ccATCCCTGTCTTCCCCCACATGATGTGGGGGttt                               <  1:18202105/35‑1 (MQ=255)
     ccATCCCTGTCTTCCCCCACATGATGTGGGGGttt                               <  1:8665756/35‑1 (MQ=255)
     ccATCCCTGTCTTCCCCCACATGATGTGGGGGgtt                               >  1:18540333/1‑35 (MQ=255)
     agagttcggcaacaaaggcttccggctgGGGGttt                               >  1:8190845‑M2/29‑35 (MQ=255)
      gagttcggcaacaaatgcttccggctgGGGGtttt                              >  1:4014834‑M2/28‑35 (MQ=255)
      gagttcggcaacaaaggcttccggctgGGGGtttt                              >  1:10478704‑M2/28‑35 (MQ=255)
      cATCCCTGTCTTCCCCCACATGATGTGGGGGtttt                              <  1:695162/35‑1 (MQ=255)
      cATCCCTGTCTTCCCCCACATGATGTGGGGGtttt                              <  1:2871431/35‑1 (MQ=255)
      agaccattggtcgagctatcgtggcTGGGGGtttt                              <  1:20032548‑M1/10‑1 (MQ=255)
       cagttccctccgcgatggcctggctgGGGGttatt                             >  1:2900954‑M2/27‑35 (MQ=255)
       agttcggcaacaaagtcttccggctgGGGGttttt                             >  1:10958569‑M2/27‑35 (MQ=255)
       aTCCCTGTCTTCCCCCACATGATGTGGGGGttttt                             <  1:1265610/35‑1 (MQ=255)
       aTCCCTGTCTTCCCCCACATGATGTGGGGGgtttt                             >  1:5196864/1‑35 (MQ=255)
       aTCCCTGTCTTCCCCCACATGATGTGGGGGgtttt                             >  1:13078307/1‑35 (MQ=255)
       aTCCCTGTCTTCCCCCACATGATGTGGGGGgtttt                             >  1:18623174/1‑35 (MQ=255)
       aTCCCTGTCTTCCCCCACATGATGTGGGGGgtttt                             >  1:10046580/1‑35 (MQ=255)
       aTCCCTGTCTTCCCCCACATGATGTGGGGGgtttt                             >  1:15692888/1‑35 (MQ=255)
        tCCCTGTCTTCCCCCACATGATGTGGGGGgttttt                            >  1:16070879/1‑35 (MQ=255)
        gttcggcaacaaaggcttccggctgGGGGtttttt                            >  1:5448958‑M2/26‑35 (MQ=255)
        ggtttcttcatcctcagtaaggctgGGGTtttttt                            >  1:9421558‑M2/26‑35 (MQ=255)
        ggtttcttcatcctcagtaaggctgGGGGtttttt                            >  1:16438728‑M2/26‑35 (MQ=255)
        caaggctatttatggtgcggatggGGGGGtttttt                            >  1:20613145‑M2/25‑35 (MQ=255)
         gtttcttcatcctcagtaaggctgGGGTttttttt                           >  1:19281010‑M2/25‑35 (MQ=255)
         gtttcttcatcctcagtaaggctgGGGGtcttttt                           >  1:17830888‑M2/25‑35 (MQ=255)
         gtgctcgatgcgctcggactggtggGGTttttttt                           >  1:1800824‑M2/26‑35 (MQ=255)
         gatatctcaggccagccattggtggGGGttttatt                           >  1:3264642‑M2/26‑35 (MQ=255)
         cccTGTCTTCCCCCACATGATGTGGGGGttttttt                           <  1:19054136/35‑1 (MQ=255)
         cccTGTCTTCCCCCACATGATGTGGGGGgtttttt                           >  1:11782813/1‑35 (MQ=255)
          tgctcgatgcgctcggactggtggGGgttcttttc                          >  1:8402984‑M2/25‑34 (MQ=255)
          ccTGTCTTCCCCCACATGATGTGGGGGgttttttt                          >  1:7100548/1‑35 (MQ=255)
          cattggtcgagctatcgtggcTGGTGGtttttttt                          <  1:15385062‑M1/14‑1 (MQ=255)
          cattggtcgagctatcgtggcTGGGGGtttttttt                          <  1:11234372‑M1/14‑1 (MQ=255)
          atatctcaggccagccattggtggGggttttttgt                          >  1:10079397‑M2/25‑33 (MQ=255)
          aggctatttatggtgcggatggGGGGGtttttttt                          >  1:2737138‑M2/23‑35 (MQ=255)
           ttcttcatcctcagtaaggctgGGGgttttttttt                         >  1:13402392‑M2/23‑34 (MQ=255)
           ttcttcatcctcagtaaggctgGGGgttttttttt                         >  1:6902834‑M2/23‑34 (MQ=255)
           ttcttcatcctcagtaaggctgGGGgtattttttt                         >  1:4182515‑M2/23‑34 (MQ=255)
           attggtcgagctatcgtggcTGGTGgttttttttt                         <  1:5490673‑M1/15‑2 (MQ=255)
           attggtcgagctatcgtggcTGGGGgttttttttt                         <  1:6242381‑M1/15‑2 (MQ=255)
            tGTCTTCCCCCACATGATGTGGGGGgttttttttt                        >  1:17169856/1‑33 (MQ=37)
            tGTCTTCCCCCACATGATGTGGGGGTTTTTTTTAt                        <  1:9696462/35‑1 (MQ=255)
            ccctccgcgatggcctggctgGGGGGTTTTTTTAt                        >  1:6429552‑M2/22‑35 (MQ=255)
             tggtcgagctatcgtggcTGGgggttttttttttt                       <  1:14650465‑M1/17‑4 (MQ=255)
             cttcatcctcagtaaggctgGgggttttttttttt                       >  1:4603767‑M2/21‑32 (MQ=255)
             cctccgcgatggcctggctgGGGGTTTTTTTTatt                       >  1:9515210‑M2/21‑34 (MQ=255)
               cTTCCCCCACATGATGTGGGGGGTTTTTTTATTCt                     >  1:20254376/1‑35 (MQ=37)
                 gcccccGCATGATGTGGGGGTTTTTTTTATCCTCa                   <  1:12231398/34‑1 (MQ=255)
                  cccccACATGATGTGGGGGTTTTTTTTATCCTCaa                  <  1:15092163/35‑1 (MQ=255)
                  cccccACATGATGTGGGGGGTTTTTTTATCCTCaa                  >  1:10326830/1‑35 (MQ=255)
                    cccACATGATGTGGGGGTTTTTTTTATCCTCAAtt                <  1:17257602/35‑1 (MQ=255)
                    cccACATGATGTGGGGGGTTTTTTTATCCTCAAtt                >  1:8786463/1‑35 (MQ=255)
                      cacaTGATGTGGGGGGTTTTTTTATCCTCAATTTg              >  1:3041094/1‑35 (MQ=255)
                       acaTGATGTGGGGGTTTTTTTTATCCTCAATTTGc             <  1:897353/35‑1 (MQ=255)
                           gatgtGGGGGTTTTTTTTATCCTCAATTTGCctgc         <  1:3415638‑M2/30‑1 (MQ=255)
                           gatgtGGGGGTTTTTTTTATCCTCAATTTGCctgc         <  1:16715921‑M2/30‑1 (MQ=255)
                           gatgtGGGGGTTTTTTTTATCCTCAATTTGCctgc         <  1:5767242‑M2/30‑1 (MQ=255)
                            atgtGGGGGTTTTTTTTATCCTCAATTTGCctgct        >  1:17105610‑M2/5‑35 (MQ=255)
                              gtggGGGTTTTTTTTATCCTCAATTTGCCtgctgc      <  1:19635111‑M2/31‑1 (MQ=255)
                              gtggGGGTTTTTTTTATCATCAATTTGCCtgctgc      <  1:16248233‑M2/31‑1 (MQ=255)
                               tggGGGTTTTTTTTATCCTCAATTTGCCTgctgct     >  1:8507077‑M2/4‑35 (MQ=255)
                               tggGGGTTTTTTTTATCCTCAATTTGCCTgctgct     <  1:19123130‑M2/32‑1 (MQ=255)
                                ggGGGTTTTTTTTATCCTCAATTTGCCTGCTGCtt    >  1:17447071‑M2/3‑35 (MQ=255)
                                ggGGGTTTTTTTTATCCTCAATTTGCCTGCTGCtt    >  1:14564143‑M2/3‑35 (MQ=255)
                                 gGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTa   >  1:9536837‑M2/2‑35 (MQ=255)
                                  gggTTTTTTTTATCCTCAATTTGCCTGCTGCTTaa  <  1:2574795/35‑1 (MQ=255)
                                  gggTTTNTTTTATCCTCAATTTGCCTGCTGCTTaa  >  1:6582475/1‑35 (MQ=255)
                                  |                                  
AGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAA  >  REL606/4085825‑4085893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.