New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 664688 = | NA (NA) | 108 (1.150) | 38/44 | NT | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
? | REL606 | 1270660 = | 0 (0.000) | intergenic (‑167/+238) | ldrC/chaA | toxic polypeptide, small/calcium/sodium:proton antiporter |
Only 100 of 275 total aligned reads displayed.
CGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAT > REL606/664654‑664719 | gttttgtgcgagccatcttccaccctttgaaattt > 1:18050576‑M1/33‑35 (MQ=255) gttttgtgcgagccatcttccaccctttgaaattt < 1:8259346‑M1/3‑1 (MQ=255) cGTGAGCAGAAAGCCCGACACGCTCCAGCAGtttt > 1:9765330/1‑35 (MQ=255) cGTGAGCAGAAAGCCCGACACGCTCCAGCAGtttt > 1:16534875/1‑35 (MQ=255) gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTg < 1:6372950/35‑1 (MQ=255) tttgtgcgagccatcttccaccctttgaaaTTtgc > 1:14605698‑M1/31‑34 (MQ=255) ttgtgcgagccatcttccaccctttgaaaTTTGTa > 1:7729859‑M1/30‑35 (MQ=255) ttgtgcgagccatcttccaccctttgaaaTTTGTa < 1:14194920‑M1/6‑1 (MQ=255) tgtgcgagccatcttccaccctttgaaaTTTGTAc > 1:2451480‑M1/29‑35 (MQ=255) aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAc > 1:4372639/1‑35 (MQ=255) gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAca > 1:11409604/1‑34 (MQ=255) gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACt < 1:11155362/35‑1 (MQ=255) gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACt > 1:13120544/1‑35 (MQ=255) gCAGAAAGCCCGACACGCTCCAGCAG‑TTTGTACTg > 1:4331342/1‑35 (MQ=38) tgcgagccatcttccaccctttgaaaTTTGTACTg > 1:3732767‑M1/27‑35 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg < 1:8718421/35‑1 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg < 1:20293126/35‑1 (MQ=255) gcgagccatcttccaccctttgaaaTTTGTACTGc < 1:5622097‑M1/10‑1 (MQ=255) gcgagccatcttccaccctttgaaaTTTGTACTGc > 1:15954720‑M1/26‑35 (MQ=255) gcgagccatcttccacactttgaaaTTTGTACTGc > 1:1156626‑M1/26‑35 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGc > 1:17824495/1‑35 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGc > 1:14648170/1‑35 (MQ=255) gAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCa < 1:17042191/35‑1 (MQ=255) gAAAGCCCGACACGCTACAGCAGTTTTGTACTGCa < 1:18368524/35‑1 (MQ=255) cgagccatcttccaccctttgaaaTTTGTACTGCa < 1:3511611‑M1/11‑1 (MQ=255) cgagccatcttccaccctttgaaaTTTGTACTGCa < 1:14253228‑M1/11‑1 (MQ=255) cgagccatcttccaccctttgaaaTTTGTACTGCa < 1:6795114‑M1/11‑1 (MQ=255) agccatcttccaccctttgaaaTTTGTACTGCAcc < 1:7211533‑M1/13‑1 (MQ=255) aaGCCCGACACGCTCCAGCAGTTTTGTACTGCAcc > 1:10498555/1‑35 (MQ=255) gccatcttccaccctttgaaaTTTGTACTGCAccc > 1:2809934‑M1/22‑35 (MQ=255) gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa < 1:19682940/35‑1 (MQ=255) ccatcttccaccctttgaagTTTGTACTGCACCCa > 1:12929704‑M1/21‑35 (MQ=255) ccatcttccaccctttgaaaTTTGTACTGCACCCa < 1:6591613‑M1/15‑1 (MQ=255) catcttccaccctttgaaaTTTGTACTGCACCCAt > 1:14973647‑M1/20‑35 (MQ=255) catcttccaccctttgaaaTTTGTACTGCACCCAt < 1:2166452‑M1/16‑1 (MQ=255) catcttccaccctttgaaaTTTGTACTGCACCCAt > 1:4054069‑M1/20‑35 (MQ=255) catcttccaccctttgaaaTTTGTACTGCACCCAt > 1:5268660‑M1/20‑35 (MQ=255) ccGACACGCTCCAGCAGTTTTGTACTGCACCCAtt < 1:18748609/35‑1 (MQ=255) atcttccaccctttgaaaTTTGTACTGCACCCAtt > 1:18662530‑M1/19‑35 (MQ=255) atcttccaccctttgaaaTTTGTACTGCACCCAtt < 1:4930010‑M1/17‑1 (MQ=255) atcttccaccctttgaaaTTTGTACTGCACCCAtt < 1:10006959‑M1/17‑1 (MQ=255) atcttccaccctttgaaaTTTGTACTGCACCCAtt > 1:13060475‑M1/19‑35 (MQ=255) tcttccaccctttgaaaTTTGTACTGCACCCAttt < 1:18225289‑M1/18‑1 (MQ=255) cttccaccctttgaaaTTTGTACTGCACCCAtttt < 1:3211092‑M1/19‑1 (MQ=255) ttccaccctttgaaaTTTGTACTGCACCCATTttg < 1:1790061‑M1/20‑1 (MQ=255) ccacGCTCCAGCAGTTTTGTACTGCACCCATTttg > 1:4073227/2‑35 (MQ=255) acacGCTCCAGCAGTTTTGTACTGCACCCATTttg > 1:19098451/1‑35 (MQ=255) tccaccctttgaaaTTTGTACTGCACCCATTttgt > 1:15789193‑M1/15‑35 (MQ=255) cacGCTCCAGCAGTTTTGTACTGCACCCATTttgt > 1:10857378/1‑35 (MQ=255) ccaccctttgaaaTTTGTACTGCACCCATTttgtt < 1:609149‑M1/22‑1 (MQ=255) ccaccctttgaaaTTTGTACTGAACCCATTttgtt > 1:9362902‑M1/14‑35 (MQ=255) caccctttgaaaTTTGTACTGCACCCATTttgttg < 1:7788120‑M1/23‑1 (MQ=255) caccctttgaaaTTTGTACTGCACCCATTttgttg < 1:3838957‑M1/23‑1 (MQ=255) caccctttgaaaTTTGTACTGCACCCATTttgttg < 1:15025159‑M1/23‑1 (MQ=255) caccctttgaaaTTTGTACTGCACCCATTttgttg > 1:18066957‑M1/13‑35 (MQ=255) caccctttgaaaTTTGTACTGCACCCATTttgttg > 1:16710471‑M1/13‑35 (MQ=255) accctttgaaaTTTGTACTGCACCCATTTTGTTgg < 1:12489198‑M1/24‑1 (MQ=255) accctttgaaaTTTGTACTGCACCCATTTTGTTgg < 1:7646432‑M1/24‑1 (MQ=255) accctttgaaaTTTGTACTGCACCCATTTTGTTgg > 1:5859062‑M1/12‑35 (MQ=255) accctttgaaaTTTGTACTGCACCCATTTTGTTgg > 1:19513930‑M1/12‑35 (MQ=255) accctttgaaaTTTGTACTGCACCCATTTTGTTgg < 1:19221906‑M1/24‑1 (MQ=255) ccctttgaaaTTTGTACTGCACCCATTTTGTTGGa > 1:17596520‑M1/11‑35 (MQ=255) cTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa < 1:8999582/35‑1 (MQ=255) ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg < 1:17383977‑M1/27‑1 (MQ=255) ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg < 1:15326868‑M1/27‑1 (MQ=255) ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg > 1:8536111‑M1/9‑35 (MQ=255) ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg < 1:14880756‑M1/27‑1 (MQ=255) ctttgaaaTTTGTACTGAACCCATTTTGTTGGACg > 1:3527261‑M1/9‑35 (MQ=255) ccAGCAGTTTTGTACTGCACCCATTTTGTTGGACg < 1:8000913/35‑1 (MQ=255) ccAGCAGTTTTGTACTGCACCCATTTTGTTGGACg < 1:13297853/35‑1 (MQ=255) tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa < 1:17954536‑M1/28‑1 (MQ=255) tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa < 1:7375556‑M1/28‑1 (MQ=255) tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa < 1:4486104‑M1/28‑1 (MQ=255) tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa > 1:2690236‑M1/8‑35 (MQ=255) tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa < 1:19248446‑M1/28‑1 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt < 1:6694722‑M1/29‑1 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt < 1:6231960‑M1/29‑1 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt > 1:10786943‑M1/7‑35 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt > 1:3003347‑M1/7‑35 (MQ=255) tgaaaTTTGTACTGCACCCATTTTGTTGGACGATg < 1:12650597‑M1/30‑1 (MQ=255) tgaaaTTTGTACTGCACCCATTTTGTAGGACGATg < 1:16788433‑M1/30‑1 (MQ=255) gcagTTTTGTACTGCACCCATTTTGTTGGACGATg > 1:12415538/1‑35 (MQ=255) gcagTTTTGTACTGCACCCATTTTGTTGGACGATg > 1:15595098/1‑35 (MQ=255) gaaaTTTGTACTGCACCCATTTTGTTGGACGATGa < 1:13552865‑M1/31‑1 (MQ=255) gaaaTTTGTACTGCACCCATTTTGTTGGACGATGa < 1:10061756‑M1/31‑1 (MQ=255) cagTTTTGTACTGCACCCATTTTGTTGGACGATGa < 1:14028119/35‑1 (MQ=255) cagTTTTGTACTGCACCCATTTTGTTGGACGATGa < 1:17808255/35‑1 (MQ=255) aaaTTTGTACTGCACCCATTTTGTTGGACGATGaa < 1:4089923‑M1/32‑1 (MQ=255) aaaTTTGTACTGCACCCATTTTGTTGGACGATGaa > 1:9627609‑M1/4‑35 (MQ=255) gTTTTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:4682050/1‑35 (MQ=38) caTGTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:10937490‑M1/33‑1 (MQ=255) caTGTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:20114320‑M1/33‑1 (MQ=255) aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:12305354‑M1/33‑1 (MQ=255) aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:14001529‑M1/33‑1 (MQ=255) aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:10113413‑M1/33‑1 (MQ=255) aaTTTATACTGCACCCATTTTGTTGGACGATGaaa < 1:14334810‑M1/33‑1 (MQ=255) aaCTTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:12069651‑M1/3‑35 (MQ=255) aTTTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:7037569‑M1/34‑1 (MQ=255) aTTTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:5401886‑M1/2‑35 (MQ=255) aTTTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:19016687‑M1/2‑35 (MQ=255) | CGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAT > REL606/664654‑664719 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |