New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 21877970 (0.680)12 (0.160) 4/36 NT 15.1% coding (669/711 nt) cutF lipoprotein involved with copper homeostasis and adhesion
?REL606 4525951 = 82 (1.060)intergenic (+8/‑59) fimC/fimD chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis

Only 100 of 194 total aligned reads displayed.

CCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC  >  REL606/4525917‑4525985
                                  |                                  
gccgactaaagtattggcacccgatacggcagggg                                    >  1:7561081‑M2/35‑35 (MQ=255)
gccgactaaagtattggcacccgatacggcagggg                                    >  1:19174817‑M2/35‑35 (MQ=255)
cccAAAATGACGGGCGTAATGGAATAACGCAgggg                                    <  1:15225258/35‑1 (MQ=255)
cccAAAATGACGGGCGTAATGGAATAACGCAgggg                                    >  1:15377873/1‑35 (MQ=255)
 ccgactaaagtattggcacccgatacggcaggggg                                   >  1:7333334‑M2/34‑35 (MQ=255)
 ccAAAATGACGGGCGTAATGGAATAACGCAggggg                                   >  1:17746988/1‑35 (MQ=255)
  cAAAATGACGGGCGTAATGGAATAACGCAGGGGGa                                  >  1:17716263/1‑35 (MQ=255)
   gactaaagtattggcacccgatacggcagggGgat                                 >  1:17887183‑M2/32‑34 (MQ=255)
   gactaaagtattggcacccgatacggcagggGGaa                                 >  1:5695669‑M2/32‑35 (MQ=255)
   gactaaagtattggcacccgatacggcagggGAaa                                 >  1:12674645‑M2/32‑35 (MQ=255)
   aaaaTGACGGGCGTAATGGGATAACGCAGGGGGaa                                 <  1:12682329/35‑1 (MQ=255)
   aaaaTGACGGGCGTAATGGAATAACGCAGGGGGaa                                 >  1:13905539/1‑35 (MQ=255)
   aaaaTGACGGGCGTAATGGAATAACGCAGGGGGaa                                 >  1:8810853/1‑35 (MQ=255)
   aaaaTGACGGGCGTAATGGAATAACGCAGGGGGaa                                 >  1:14038212/1‑35 (MQ=255)
      aTGACGGGCGTAATGGAATAACGCAGGTGGAAttt                              >  1:6239621/1‑35 (MQ=255)
      aTGACGGGCGTAATGGAATAACGCAGGGGGAAttt                              >  1:17943753/1‑35 (MQ=255)
      aTGACGGGCGTAATGGAATAACGCAGGGGGAAttt                              >  1:20218496/1‑35 (MQ=255)
      aTGACGGGCGTAATGGAATAACGCAGGGGGAAttt                              <  1:3600579/35‑1 (MQ=255)
      aTGACGGGCGTAATGGAATAACGCAGGGGGAAttt                              <  1:6177991/35‑1 (MQ=255)
       tGACGGGCGTAATGGAATAACGCAGGGGGAAtttt                             <  1:16763680/35‑1 (MQ=255)
       tGACGGGCGTAATGGAATAACGCAGGGGGAAtttt                             >  1:9678049/1‑35 (MQ=255)
       aaagtattggcacccgatacggcagggGGAAtttt                             >  1:2193919‑M2/28‑35 (MQ=255)
       aaagtattggcacccgatacggcagggGGAAtttt                             >  1:11476071‑M2/28‑35 (MQ=255)
        gACGGGCGTAATGGAATAACGCAGGGGGAAttttt                            <  1:19793519/35‑1 (MQ=255)
        gACGGGCGTAATGGAATAACGCAGGGGGAAttttt                            <  1:8601476/35‑1 (MQ=255)
        gACGGGCGTAATGGAATAACGCAGGGGGAAttttt                            >  1:13295179/1‑35 (MQ=255)
        gACGGGCGTAATGGAATAACGCAGGGGGAAttttt                            >  1:10103054/1‑35 (MQ=255)
        gACGGGCGTAATGGAATAACGCAGGGGGAAttttt                            <  1:2856921/35‑1 (MQ=255)
        gACGGGCGTAATGGAATAACGCAGGGGGAAttttt                            >  1:699527/1‑35 (MQ=255)
        aagtattggcacccgatacggcagggGGAAttttt                            >  1:6265302‑M2/27‑35 (MQ=255)
         agtattggcacccgatacggcagggGGaattttac                           >  1:12182402‑M2/26‑33 (MQ=255)
         agtattggcacccgatacggcagggGGAATTTATc                           >  1:10394355‑M2/26‑35 (MQ=255)
         aCGGGCGTAATGGAATAACGCAGGGGGAATTTTTc                           <  1:18574119/35‑1 (MQ=255)
         aCGGGCGTAATGGAATAACGCAGGGGGAATTTTTc                           <  1:14821723/35‑1 (MQ=255)
         aCGGGCGTAATGGAATAACGCAGGGGGAATTTTTc                           >  1:11123093/1‑35 (MQ=255)
         aCGGGCGTAATGGAATAACGCAGGGGGAATTTTTc                           <  1:10945370/35‑1 (MQ=255)
          gtattggcacccgatacggcagggGgaattttccc                          >  1:14538603‑M2/25‑32 (MQ=255)
          gtattggcacccgatacggcagggGGAATTTTtcc                          >  1:9533844‑M2/25‑34 (MQ=255)
          cGGGCGTAATGGAATAACGCAGGGGGAATTTTTCg                          >  1:19873231/1‑35 (MQ=255)
          cGGGCGTAATGGAATAACGCAGGGGGAATTTTTCg                          <  1:12353852/35‑1 (MQ=255)
          cGGGCGTAATGGAATAACGCAGGGGGAATTTTTCg                          <  1:12916629/35‑1 (MQ=255)
          cGGGCGTAATGGAATAACGCAGGGGGAATTTTTCg                          <  1:3570503/35‑1 (MQ=255)
           gggCGTAATGGAATAACGCAGGGGGAATTTTTCGc                         <  1:2301879/35‑1 (MQ=255)
            ggCGTAATGGAATAACGCAGGGGGAATTTTTCGcc                        <  1:10603155/35‑1 (MQ=255)
            ggCGTAATGGAATAACGCAGGGGGAATTTTTCGcc                        >  1:5127165/1‑35 (MQ=255)
            ggCGTAATGGAATAACGCAGGGGGAATTTTTCGcc                        >  1:14996221/1‑35 (MQ=255)
            ggCGTAATGGAATAACGCAGGGGGAATTTTTCGcc                        <  1:9392844/35‑1 (MQ=255)
            ggCGTAATGGAATAACGCAGGGGGAATTTTTCGcc                        >  1:10554164/1‑35 (MQ=255)
             gCGTAATGGAATAACGCATGGGGAATTTTTCGCCt                       >  1:8788745/1‑35 (MQ=255)
             gCGTAATGGAATAACGCAGGGGGAATTTTTCGCCt                       >  1:681945/1‑35 (MQ=255)
             gCGTAATGGAATAACGCAGGGGGAATTTTTCGCCt                       <  1:3824431/35‑1 (MQ=255)
              cGTAATGGAATAACGCAGGGGGAATTTTTCGCCTg                      >  1:14430465/1‑35 (MQ=255)
                tAATGGAATAACGCAGGGGGAATTTTTCGCCTGaa                    >  1:12812581/1‑35 (MQ=255)
                 aaTGGAATAACGCAGGGGGAATTTTTCGCCTGAAt                   <  1:18936990/35‑1 (MQ=255)
                  aTGGAATAACGCAGGGGGAATTTTTCGCCTGAATa                  <  1:5773245/35‑1 (MQ=255)
                   tGGAATAACGCAGGGGGAATTTTTCGCCTGAATaa                 >  1:7895050/1‑35 (MQ=255)
                   tGGAATAACGCAGGGGGAATTTTTCGCCTGAATaa                 <  1:2660348/35‑1 (MQ=255)
                    ggAATAACGCAGGGGGAATTTTTCGCCTGAATaaa                >  1:8057236/1‑35 (MQ=255)
                     gAATAACGCAGGGGGAATTTTTCGCCTGAATaaaa               >  1:20399418/1‑35 (MQ=255)
                     gAATAACGCAGGGGGAATTTTTCGCCTGAATaaaa               <  1:5314294/35‑1 (MQ=255)
                      aaTAACGCAGGGGGAATTTTTCGCCTGAATaaaaa              >  1:4295544/1‑35 (MQ=255)
                      aaTAACGCAGGGGGAATTTTTCGCCTGAATaaaaa              <  1:9123785/35‑1 (MQ=255)
                       aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAg             <  1:17028525/35‑1 (MQ=255)
                       aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAg             <  1:3176745/35‑1 (MQ=255)
                       aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAg             <  1:15607870/35‑1 (MQ=255)
                        tAACGCAGGGTGAATTTTTCGCCTGAATAAAAAGa            >  1:10051985/1‑35 (MQ=255)
                         aaCGCAGGTGGAATTTTTCGCCTGAATAAAAAGaa           >  1:13748262/1‑35 (MQ=255)
                         aaCGCAGGGGGAATTTTTCGCCTGAATAAAAAGaa           >  1:14591764/1‑35 (MQ=255)
                          aCGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAt          <  1:5262070/35‑1 (MQ=255)
                          aCGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAt          >  1:4971467/1‑35 (MQ=255)
                          aCGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAt          <  1:13717606/35‑1 (MQ=255)
                           cGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAtt         >  1:15612825/1‑35 (MQ=255)
                           cGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAtt         <  1:10711695/35‑1 (MQ=255)
                           cGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAtt         >  1:5562997/1‑35 (MQ=255)
                           cGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAtt         >  1:18743683/1‑35 (MQ=255)
                            gcagggGGAATTTTTCGCCTGAATAAAAAGAattt        >  1:14827107‑M2/7‑34 (MQ=255)
                            gcagggGGAATTTTTCGCCTGAATAAAAAGAATTg        >  1:2262202‑M2/7‑35 (MQ=255)
                            gcagggGGAATTTTTCGCCTGAATAAAAAGAATTg        <  1:7103780‑M2/29‑1 (MQ=255)
                            gcagggGGAATTTTTCGCCTGAATAAAAAGAATTg        >  1:19480815‑M2/7‑35 (MQ=255)
                            gcagggGGAATTTTTCGCCTGAATAAAAAGAATTg        >  1:12046180‑M2/7‑35 (MQ=255)
                            gcagggGGAATTTTTCGCATGAATAAAAAGAATTg        <  1:5504980‑M2/29‑1 (MQ=255)
                             cagggGGAATTTTTCGCCTGAATAAAAAGAATTGa       >  1:16638936‑M2/6‑35 (MQ=255)
                             cagggGGAATTTTTCGCCTGAATAAAAAGAATTGa       >  1:7414346‑M2/6‑35 (MQ=255)
                             cagggGGAATTTTTCGCCTGAATAAAAAGAATTGa       <  1:4039349‑M2/30‑1 (MQ=255)
                              agggGGAATTTTTCGCCTGAATAAAAAGAATTGAc      >  1:6009889‑M2/5‑35 (MQ=255)
                               gggGGAATTTTTCGCCTGAATAAAAAGAATTGACt     <  1:13412032‑M2/32‑1 (MQ=255)
                               gggGGAATTTTTCGCCTGAATAAAAAGAATTGACt     <  1:10329934‑M2/32‑1 (MQ=255)
                               gggGGAATTTTTCGCCTGAATAAAAAGAATTGACt     <  1:3353049‑M2/32‑1 (MQ=255)
                               gggGGAATTTTTCGCCTGAATAAAAAGAATTGACt     >  1:4895612‑M2/4‑35 (MQ=255)
                               gggGGAATTTTTCGCCTGAATAAAAAGAATTGACt     <  1:16321985‑M2/32‑1 (MQ=255)
                                ggGGAATTTTTCGCCTGAATAAAAAGAATTGACTg    >  1:18021428‑M2/3‑35 (MQ=255)
                                ggGGAATTTTTCGCCTGAATAAAAAGAATTGACTg    >  1:20326928‑M2/3‑35 (MQ=255)
                                ggGGAATTTTTCGCCTGAATAAAAAGAATTGACTg    >  1:10335992‑M2/3‑35 (MQ=255)
                                ggGGAATTTTTCGCCTGAATAAAAAGAATTGACTg    >  1:2150611‑M2/3‑35 (MQ=255)
                                 gGGAATTTTTCGCCTGAATAAAAAGAATTGACTGc   >  1:4398098‑M2/2‑35 (MQ=255)
                                 gGGAATTTTTCGCCTGAATAAAAAGAATTGACTGc   <  1:12008676‑M2/34‑1 (MQ=255)
                                 gGGAATTTTTCGCCTGAATAAAAAGAATTGACTGc   >  1:19197068‑M2/2‑35 (MQ=255)
                                  ggAATTTTTCGCCTGAATAAAAAGAATTGACtcgc  >  1:165016/1‑32 (MQ=255)
                                  ggAATTTTTCGCCTGAATAAAAAGAATTGACTGcc  >  1:15803783/1‑35 (MQ=255)
                                  ggAATTTTTCGCCTGAATAAAAAGAATTGACTGcc  <  1:17617754/35‑1 (MQ=255)
                                  |                                  
CCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC  >  REL606/4525917‑4525985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.