New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1857572 = | NA (NA) | 13 (0.200) | 4/30 | NT | 17.7% | noncoding (509/1343 nt) | IS186 | repeat region |
? | REL606 | = 2118058 | 97 (0.940) | coding (720/2292 nt) | ECB_02004 | Replication gene A protein |
Only 100 of 358 total aligned reads displayed.
AAGGAGAACGGTCTTTATTGACCTCCCCGACAGCAATCAGTAACGCCTCATGCCAGCGCATACGCTGGC > REL606/2118024‑2118092 | ggAGAACGGTCTTTATTGCCCTCCCCGACAGCAAt < 1:14992720/35‑1 (MQ=255) agaACGGTCTTTATTGACCTCCCCGACAGCAATCa > 1:12907843/1‑35 (MQ=255) agaACGGTCTTTATTGACCTCCCCGACAGCAATCa > 1:20401929/1‑35 (MQ=255) gaACGGTCTTTATTGCCCTCCCCGACAGCAATCAg < 1:15490614/35‑1 (MQ=255) gaACGGTCTTTATTGACCTCCCCGACAGCAATCAg < 1:11215409/35‑1 (MQ=255) aaCGTTCTTTATTGACCTCCCCGACAGCAATCAGt > 1:1680228/1‑35 (MQ=255) aaCGGTCTTTATTGCCCTCCCCGACAGCAATCAGt < 1:3590142/35‑1 (MQ=255) aaCGGTCTTTATTGACCTCCCCGACAGCAATCAGt > 1:20557566/1‑35 (MQ=255) cGGTCTTTATTGCCCTCCCCGACAGCAATCAGTaa < 1:1255788/35‑1 (MQ=255) cGGTCTTTATTGACCTCCCCGATAGCAATCAGTaa > 1:1076177/1‑35 (MQ=255) ggTCTTTATTGACCTCCCCGACAGCAATCAGTAAc > 1:2238897/1‑35 (MQ=255) tCTTTATTGACCTCCCCGACAGCAATCAGTAACGc > 1:4925541/1‑35 (MQ=255) tttATTGACCTCCCCGACAGCAATCAGTAACGCCt > 1:8823050/1‑35 (MQ=255) tttATTGACCTCCCCGACAGCAATCAGTAACGCCt < 1:9022110/35‑1 (MQ=255) tATTGCCCTCCCCGACAGCAATCAGTAACGCCTCa < 1:1052791/35‑1 (MQ=255) tttgACCTACCCGACAGCAgagacgctgaacggct > 1:18985418‑M2/2‑19 (MQ=255) ttGAGCTCCCCGACAGCAgagacgctgaacggctg > 1:4012855‑M2/1‑18 (MQ=255) ttGACCTCCCCGACAGCAgagacgctgaacggctg > 1:8016734‑M2/1‑18 (MQ=255) ttGACCTCCCCGACAGCAATCAGTAACGCCTCATg > 1:12714337/1‑35 (MQ=255) ttGACCTCCCCGACAGCAATCAGTAACGCCTCATg > 1:8727006/1‑35 (MQ=255) tgcccTCCCCGACAGCAATCAGTAACGCCTCATGc < 1:1724920/32‑1 (MQ=255) tccccTCCCCGACAGCAATCAGTAACGCCTCATGc < 1:8291445/32‑1 (MQ=255) taaccTCCCCGACAGCAgagacgctgaacggctgg > 1:10145678‑M2/3‑17 (MQ=255) tGACCTCCCCGACAGCAATCAGTAACGCCTCATGc < 1:19434218/35‑1 (MQ=255) gcccTCCCCGACAGCAATCAGTAACGCCTCATGcc < 1:6212399/33‑1 (MQ=255) gACCTCCCCGACAGCAATCAGTAACGCCTCATGcc > 1:6816601/1‑35 (MQ=255) cccaCCCCGACAGCAgagacgctgaacggctggac > 1:15910967‑M2/2‑15 (MQ=255) cccTCCCCGACAGCAATCAGTAACGCCTCATGCCa < 1:562122/34‑1 (MQ=255) aCCACCCCGACAGCAgagacgctgaacggctggac > 1:5493950‑M2/1‑15 (MQ=255) gcaccccgacAGCAgagacgctgaacggctggacc > 1:14250453‑M2/4‑14 (MQ=255) cccccccGACAGCAATCAGTAACGCCTCATGCCAg < 1:13104166/32‑1 (MQ=255) ccCCCCCGACAGCAgagacgctgaacggctggacc > 1:712887‑M2/1‑14 (MQ=255) accccccgacAGCAgagacgctgaacggctggacc > 1:16345166‑M2/4‑14 (MQ=255) ccccccgaCAGCAgagacgctgaacggctggaccg > 1:11612888‑M2/3‑13 (MQ=255) ccccccgaCAGCAgagacgctgaacggctggaccg > 1:13694568‑M2/3‑13 (MQ=255) ccccccgaCAGCAgagacgctgaacggctggaccg > 1:13489342‑M2/3‑13 (MQ=255) caccccgaCAGCAgagacgctgaacggctggaccg > 1:16482523‑M2/3‑13 (MQ=255) cTCCCGGACAGCAATCAGTAACGCCTCATGCCAgc < 1:16912689/35‑1 (MQ=255) cTCCCCGACAGCAATCAGTAACGCCTCATGCCAgc < 1:11783490/35‑1 (MQ=255) cTCCCCGACAGCAATCAGTAACGCCTCATGCCAgc > 1:11909064/1‑35 (MQ=255) cTCCCCGACAGCAATCAGTAACGCCTCATGCCAgc < 1:5175479/35‑1 (MQ=255) acccccGACAGCAATCAGTAACGCCTCATGCCAgc < 1:14521046/33‑1 (MQ=255) tCCCCGACAGCAATCAGTAACGCCTCATGCCAgcg > 1:17030131/1‑35 (MQ=255) cccccgCCAGCAgagacgctgaacggctggaccga > 1:9276979‑M2/2‑12 (MQ=255) cccccgACAGCAgagacgctgaacggctggaccga > 1:15817036‑M2/2‑12 (MQ=255) cccccgACAGCAgagacgctgaacggctggaccga > 1:13903530‑M2/2‑12 (MQ=255) cacccgaCAGCAgagacgctgaacggctggaccga > 1:17949608‑M2/3‑12 (MQ=255) ccccGCCAGCAgagacgctgaacggctggaccgat > 1:2727619‑M2/1‑11 (MQ=255) ccccGACAGCAgagacgctgaacggctggaccgat > 1:19102211‑M2/1‑11 (MQ=255) ccccGACAGCAgagacgctgaacggctggaccgat > 1:18501668‑M2/1‑11 (MQ=255) ccccGACAGCAgagacgctgaacggctggaccgat > 1:15164072‑M2/1‑11 (MQ=255) ccccGACAGCAgagacgctgaacggctggaccgat > 1:12383919‑M2/1‑11 (MQ=255) ccgGACAGCAgagacgctgaacggctggaccgatt > 1:15221371‑M2/1‑10 (MQ=255) cccGCCAGCAgagacgctgaacggctggaccgatt > 1:10311398‑M2/1‑10 (MQ=255) cccGACAGCAgagacgctgaacggctggaccgatt > 1:7341089‑M2/1‑10 (MQ=255) ccGACAGCAgagacgctgaacggctggaccgattt > 1:4621594‑M2/1‑9 (MQ=255) ccGACAGCAgagacgctgaacggctggaccgattt > 1:3683183‑M2/1‑9 (MQ=255) ccGACAGCAgagacgctgaacggctggaccgattt > 1:14337899‑M2/1‑9 (MQ=255) ccGACAGCAgagacgctgaacggctggaccgattt > 1:13045565‑M2/1‑9 (MQ=255) ccGACAGCAATCAGTAACGCCTCATGCCAGCGCAt > 1:18165555/1‑35 (MQ=255) cGACAGCAgagacgctgaacggctggaccgatttg > 1:7207541‑M2/1‑8 (MQ=255) cGACAGCAgagacgctgaacggctggaccgatttg > 1:3488259‑M2/1‑8 (MQ=255) cGACAGCAgagacgctgaacggctggaccgatttg > 1:17205260‑M2/1‑8 (MQ=255) cGACAGCAgagacgctgaacggctggaccgatttg > 1:955437‑M2/1‑8 (MQ=255) cGACAGCAATCAGTAACGCCTCATGCCAGCTCATa > 1:20292996/1‑35 (MQ=255) cGACAGCAATCAGTAACGCCTCATGCCAGCGCATa < 1:13013347/35‑1 (MQ=255) cGACAGCAATCAGTAACGCCTCATGCCAGCGCATa < 1:12608594/35‑1 (MQ=255) gACAGCAgagacgctgaacggctggaccggtttgc < 1:2462860‑M2/35‑29 (MQ=255) gACAGCAgagacgctgaacggctggaccgatttgc > 1:17119352‑M2/1‑7 (MQ=255) gACAGCAgagacgctgaacggctggaccgatttgc > 1:2290636‑M2/1‑7 (MQ=255) gACAGCAgagacgctgaacggctggaccgatttgc > 1:14181347‑M2/1‑7 (MQ=255) gACAGCAgagacgctgaacggctggaccgatttgc > 1:3887285‑M2/1‑7 (MQ=255) gACAGCAATCAGTAACGCCTCATGCCAGCGCATAc > 1:9889233/1‑35 (MQ=255) gACAGCAATCAGTAACGCCTCATGCCAGCGCATAc < 1:16086010/35‑1 (MQ=255) aCAGCAgagacgctgaacggctggaccgatttgcg > 1:15073675‑M2/1‑6 (MQ=255) aCAGCAgagacgctgaacggctggaccgatttgcg > 1:10689451‑M2/1‑6 (MQ=255) aCAGCAgagacgctgaacggctggaccgatttgcg > 1:8166344‑M2/1‑6 (MQ=255) aCAGCAgagacgctgaacggctggaccgatttgcg > 1:19682165‑M2/1‑6 (MQ=255) aCAGCAgagacgctgaacggctggaccgatttgcg > 1:15843956‑M2/1‑6 (MQ=255) cagcagagacgctgaacggctggaccgatttgcgc > 1:10259080‑M2/1‑5 (MQ=255) cagcagagacgctgaacggctggaccgatttgcac > 1:9616450‑M2/1‑5 (MQ=255) cAGCAATCAGTAACGCCTCATGCCAGCGCATACGc > 1:3228562/1‑35 (MQ=255) cAGCAATCAGTAACGCCTCATGCCAGCGCATACGc > 1:20066097/1‑35 (MQ=255) agcagagacgctgaactgctggaccgatttgcgca < 1:13292546‑M2/35‑32 (MQ=255) agcagagacgctgaacggctggaccgatttgcgca > 1:8658797‑M2/1‑4 (MQ=255) agcagagacgctgaacggctggaccgatttgcgca > 1:7519105‑M2/1‑4 (MQ=255) agcagagacgctgaacggctggaccgatttgcgca < 1:14759626‑M2/35‑32 (MQ=255) agcagagacgctgaacggctggaccgatttgcgca > 1:4493865‑M2/1‑4 (MQ=255) aGCAATCAGTAACGCCTCATGCCAGCGCATACGCt > 1:3297363/1‑35 (MQ=255) gcagagacgctgaacggctggaccgatttgcgcaa > 1:7739277‑M2/1‑3 (MQ=255) gcagagacgctgaacggctggaccgatttgcgcaa > 1:6313939‑M2/1‑3 (MQ=255) cAATCAGTAACGCCTCATGCCAGCGCATACGCTgg > 1:5791702/1‑35 (MQ=255) cAATCAGTAACGCCTCATGCCAGCGCATACGCTgg < 1:8409329/35‑1 (MQ=255) cAATCAGTAACGCCTCATGCCAGCGCATACGCTgg < 1:17376410/35‑1 (MQ=255) agagacgctgaacggctggaccgatttgcgcaaac > 1:15652961‑M2/1‑1 (MQ=255) agagacgctgaacggctggaccgatttgcgcaaac > 1:19316241‑M2/1‑1 (MQ=255) agagacgctgaacggctggaccgatttgcgcaaac > 1:17802898‑M2/1‑1 (MQ=255) aaTCAGTAACGCCTCATGCCAGCGCATACGCTGGc < 1:11062311/35‑1 (MQ=255) aaTCAGTAACGCCTCATGCCAGCGCATACGCTGGc < 1:4077603/35‑1 (MQ=255) aaTCAGTAACGCCTCATGCCAGCGCATACGCTGGc > 1:18726389/1‑35 (MQ=255) | AAGGAGAACGGTCTTTATTGACCTCCCCGACAGCAATCAGTAACGCCTCATGCCAGCGCATACGCTGGC > REL606/2118024‑2118092 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |