New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 201768335 (0.340)14 (0.170) 3/38 NT 18.8% intergenic (‑178/+89) yeeF/yeeY predicted amino‑acid transporter/predicted DNA‑binding transcriptional regulator
?REL606 = 2919373 93 (1.140)intergenic (+6/+37) idi/lysS isopentenyl‑diphosphate delta‑isomerase/lysine tRNA synthetase, constitutive

Only 100 of 205 total aligned reads displayed.

TGTTGTCTGCTTTCGCGCAGCACAATTAAAAAACCCCGACATTTGCCGGGGTTATGAGCATAACGTAAT  >  REL606/2919339‑2919407
                                  |                                  
 nttgtCNGCTTTCGCGCAGCACAATTAAAAAACCc                                   >  1:516685‑M2/1‑34 (MQ=255)
 gttgtCTGCTTTCGCGCAGCACAATTAAAAAACCc                                   >  1:18655976‑M2/1‑34 (MQ=255)
  ttgtCTGCTTTCGCGCAGCACAATTAAAAAACCcc                                  >  1:4083073‑M2/1‑33 (MQ=255)
  ttgtCTGCTTTCGCGCAGCACAATTAAAAAACCcc                                  >  1:17716208‑M2/1‑33 (MQ=255)
  ttgtCTGCTTTCGCGCAGCACAATTAAAAAACCcc                                  >  1:10960839‑M2/1‑33 (MQ=255)
  ttgtCTGCTTTCGCGCAGCACAATTAAAAAACCcc                                  <  1:18486562‑M2/35‑3 (MQ=255)
   tgtCTGCTTTCGCGCAGCACAATTAAAAAACCccg                                 >  1:9081978‑M2/1‑32 (MQ=255)
   tgtCTGCTTTCGCGCAGCACAATTAAAAAACCccg                                 >  1:1509111‑M2/1‑32 (MQ=255)
   tgtCTGCTTTCGCGCAGCACAATTAAAAAACCccg                                 >  1:10309701‑M2/1‑32 (MQ=255)
    gtCTGCTTTCGCGCAGCACAATTAAAAAACCccga                                >  1:8672898‑M2/1‑31 (MQ=255)
    gtCTGCTTTCGCGCAGCACAATTAAAAAACCccga                                <  1:9505922‑M2/35‑5 (MQ=255)
     tCTGCTTTCGCGCAGCACAATTAAAAAACCccgcc                               <  1:2271413‑M2/35‑6 (MQ=255)
     tCTGCTTTCGCGCAGCACAATTAAAAAACCccgac                               <  1:3834622‑M2/35‑6 (MQ=255)
     tCTGCTTTCGCGCAGCACAATTAAAAAACCccgac                               <  1:18209017‑M2/35‑6 (MQ=255)
     tCTGCTTTCGCGCAGCACAATTAAAAAACCccgac                               >  1:17968062‑M2/1‑30 (MQ=255)
      cTGCTTTCGCGCAGCACAATTAAAAAACCCCGACa                              <  1:17448669/35‑1 (MQ=255)
       tGCTTTCGCGCAGCACAATTAAAAAACCCCGACAt                             <  1:11268090/35‑1 (MQ=255)
       tGCTTTCGCGCAGCACAATTAAAAAACCCCGACAt                             >  1:8770130/1‑35 (MQ=255)
        gCTTTCGCGCAGCACAATTAAAAAACCCCGACAtt                            >  1:20145939/1‑35 (MQ=255)
        gCTTTCGCGCAGCACAATTAAAAAACCCCGACAtt                            >  1:16626300/1‑35 (MQ=255)
         cTTTCGCGCAGCACAATTAAAAAACCCCGACAttt                           >  1:10659797/1‑35 (MQ=255)
          tttCGCGCAGCACAATTAAAAAACCCCGACATTTg                          >  1:3404213/1‑35 (MQ=255)
           ttCGCGCAGCACAATTAAAAAACCCCGACATTTGc                         <  1:4807293/35‑1 (MQ=255)
           ttCGCGCAGCACAATTAAAAAACCCCGACATTTGc                         <  1:5078045/35‑1 (MQ=255)
            tCGCGCAGCACAATTAAAAAACCCCGACATTTGcc                        >  1:19433446/1‑35 (MQ=255)
            tCGCGCAGCACAATTAAAAAACCCCGACATTTGcc                        >  1:19087510/1‑35 (MQ=255)
            tCGCGCAGCACAATTAAAAAACCCCGACATTTGcc                        >  1:17569040/1‑35 (MQ=255)
            tCGCGCAGCACAATTAAAAAACCCCGACATTTGcc                        <  1:12189746/35‑1 (MQ=255)
            tCGCGCAGCACAATTAAAAAACCCCGACAATTGcc                        >  1:6526893/1‑35 (MQ=255)
            gcgcaCAGCGCAATTAAAAACCCCCGACATTTGca                        <  1:19754153/34‑2 (MQ=21)
             cgcgCAGCACAATTAAAAAACCCCGACATTTGCCg                       <  1:9815556/35‑1 (MQ=255)
              gcgcAGCACAATTAAAAAACCCCGACATTTGCCgg                      >  1:14141216/1‑35 (MQ=255)
              gcgcAGCACAATTAAAAAACCCCGACATTTGCCgg                      <  1:5230076/35‑1 (MQ=255)
              gcgcAGCACAATTAAAAAACCCCGACATTTGCCgg                      >  1:680929/1‑35 (MQ=255)
              gcgcAGCACAATTAAAAAACCCCGACATTTGCCgg                      >  1:8033055/1‑35 (MQ=255)
              gcgcAGCACAATTAAAAAACCCCGACATTTGCCgg                      <  1:11546318/35‑1 (MQ=255)
               cgcAGCACAATTAAAAAACCCCGACATTTGCCggg                     >  1:313340/1‑35 (MQ=255)
               cgcAGCACAATTAAAAAACCCCGACATTTGCCggg                     >  1:7137192/1‑35 (MQ=255)
                gcagcaCAATTAAAAAACCCCGACATTTGCCgggg                    >  1:3949595/1‑35 (MQ=255)
                gcagcaCAATTAAAAAACCCCGACATTTGCCgggg                    <  1:1321207/35‑1 (MQ=255)
                gcagcaCAATTAAAAAACCCCGACATTTGCCgggg                    >  1:12417305/1‑35 (MQ=255)
                 cagcaCAATTAAAAAACCCCGACATTTGCCGGGGt                   >  1:2022735/1‑35 (MQ=255)
                 cagcaCAATTAAAAAACCCCGACATTTGCCGGGGt                   >  1:4300800/1‑35 (MQ=255)
                 cagcaCAATTAAAAAACCCCGACATTTGCCGGGGt                   >  1:10181448/1‑35 (MQ=255)
                 cagcaCAATTAAAAAACCCCGACATTTGCCGGGGt                   >  1:13346746/1‑35 (MQ=255)
                 cagcaCAATTAAAAAACCCCGACATTTGCCGGGGt                   <  1:12536849/35‑1 (MQ=255)
                  agcaCAATTAAAAAACCCCGACATTTGCCGGGGtt                  >  1:4652733/1‑35 (MQ=255)
                  agcaCAATTAAAAAACCCCGACATTTGCCGGGGtt                  <  1:7753294/35‑1 (MQ=255)
                  agcaCAATTAAAAAACCCCGACATTTGCCGGGGtt                  >  1:11696391/1‑35 (MQ=255)
                  agcaCAATTAAAAAACCCCGACATTTGCCGGGGtt                  >  1:11613087/1‑35 (MQ=255)
                   gcaCAATTAAAAAACCCCGACATTTGCCGGGGTTa                 >  1:16503409/1‑35 (MQ=255)
                   gcaCAATTAAAAAACCCCGACATTTGCCGGGGTTa                 <  1:6896249/35‑1 (MQ=255)
                    cacaATTAAAAAACCCCGACATTTGCCGGGGTTAt                <  1:10457069/35‑1 (MQ=255)
                    cacaATTAAAAAACCCCGACATTTGCCGGGGTTAt                >  1:8987397/1‑35 (MQ=255)
                     acaATTAAAAAACCCCTACATTTGCCGGGGTTATg               >  1:15535913/1‑35 (MQ=255)
                     acaATTAAAAAACCCCGACATTTGCCGGGGTTATg               >  1:13383305/1‑35 (MQ=255)
                     acaATTAAAAAACCCCGACATTTGCCGGGGTTATg               >  1:3496873/1‑35 (MQ=255)
                     acaATTAAAAAACCCCGACATTTGCCGGGGTTATg               <  1:2483878/35‑1 (MQ=255)
                     acaATTAAAAAACCCAGACATTTGCCGGGGTTATg               <  1:14503264/35‑1 (MQ=255)
                      caATTAAAAAACCCCGACATTTGCCGGGGTTATGa              >  1:11249853/1‑35 (MQ=255)
                      caATTAAAAAACCCCGACATTTGCCGGGGTTATGa              <  1:787819/35‑1 (MQ=255)
                      caATTAAAAAACCCCGACATTTGCCGGGGTTATGa              >  1:19146895/1‑35 (MQ=255)
                       aaTTAAAAAACCCCGACATTTGCCGGGGTTATGAg             <  1:19625607/35‑1 (MQ=255)
                        aTTAAAAACCCCCGACATTTGCCGGGGTTATGAGc            <  1:16824760/35‑1 (MQ=255)
                        aTAAAAAAACCccgacgtttcatcagcgtcggtta            >  1:3743737‑M2/1‑11 (MQ=255)
                         ttAAAAAACCCCGACATTTGCCGGGGTTATGAGCa           <  1:9401616/35‑1 (MQ=255)
                         ttAAAAAACCCCGACATTTGCCGGGGTTATGAGCa           <  1:18605749/35‑1 (MQ=255)
                           caaaaacCccgacgtttcatcagcgtcggttattt         >  1:11931193‑M2/2‑8 (MQ=255)
                           acaaaaccccgacgtttcatcagcgtcggttattt         >  1:5508404‑M2/3‑8 (MQ=255)
                           aaaaaaCCccgacgtttcatcagcgtcggttattt         >  1:3466032‑M2/1‑8 (MQ=255)
                           aaaaaaCCCCGACATTTGCCGGGGTTATGAGCATa         >  1:14309326/1‑35 (MQ=255)
                            caaaaaCccgacgtttcatcagcgtcggttatttt        >  1:18455566‑M2/2‑7 (MQ=255)
                            aaaaaCCccgacgtttcatcagcgtcggttatttt        >  1:14657661‑M2/1‑7 (MQ=255)
                            aaaaaCCccgacgtttcatcagcgtcggttatttt        >  1:16352585‑M2/1‑7 (MQ=255)
                            aaaaaCCccgacgtttcatcagcgtcggttatttt        >  1:8859657‑M2/1‑7 (MQ=255)
                            aaaaaCCCCGACATTTGCCGGGGTTATGAGCATaa        <  1:14102632/35‑1 (MQ=255)
                            aaaaaCCCCGACATTTGCCGGGGTTATGAGCATaa        <  1:14922607/35‑1 (MQ=255)
                             aaaaCCCCGACATTTGCCGGGGTTATGAGCATAAc       >  1:9228494/1‑35 (MQ=255)
                             aaaaCCCCGACATTTGCCGGGGTTATGAGCATAAc       >  1:8338417/1‑35 (MQ=255)
                             aaaaCCCCGACATTTGCCGGGGTTATGAGCATAAc       <  1:1134482/35‑1 (MQ=255)
                              aaaCCccgacgtttcatcagcgtcggttatttttt      >  1:13783270‑M2/1‑5 (MQ=255)
                              aaaCCCCGACATTTGCCGGGGTTATGAGCATAACg      >  1:16065150/1‑35 (MQ=255)
                              aaaCCCCGACATTTGCCGGGGTTATGAGCATAACg      <  1:7536420/35‑1 (MQ=255)
                              aaaCCCCGACATTTGCCGGGGTTATGAGCATAACg      <  1:5071689/35‑1 (MQ=255)
                               aaCCccgacgtttcatcagcgtcggttattttttg     >  1:19347786‑M2/1‑4 (MQ=255)
                               aaCCCCGACATTTGCCGGGGTTATGAGCATAACGt     <  1:18381501/35‑1 (MQ=255)
                               aaCCCCGACATTTGCCGGAGTTATGAGCATAACGt     <  1:13246171/35‑1 (MQ=255)
                                aCCCGGACATTTGCCGGGGTTATGAGCATAACGTa    <  1:5694477/35‑1 (MQ=255)
                                aCCCCGACATTTGCCGGGGTTATGAGCATAACGTa    <  1:2152027/35‑1 (MQ=255)
                                aCCCCGACATTTGCCGGGGTTATGAGCATAACGTa    >  1:1535630/1‑35 (MQ=255)
                                aCCCCGACATTTGCCGGGGTTATGAGCATAACGTa    >  1:6643118/1‑35 (MQ=255)
                                aCCCCGACATTTGCCGGGGTTATGAGCATAACGTa    >  1:5945593/1‑35 (MQ=255)
                                aCCCCGACATTTGCCGGGGTTATGAGCATAACGTa    >  1:5549106/1‑35 (MQ=255)
                                 ccccgacgtttcatcagcgtcggttattttttgct   >  1:6752896‑M2/1‑2 (MQ=255)
                                 ccccgacgtttcatcagcgtcggttattttttgct   >  1:14884115‑M2/1‑2 (MQ=255)
                                 ccccgacgtttcataagcgtcggttattttttgct   >  1:2782853‑M2/1‑2 (MQ=255)
                                 ccccGACATTTGCCGGGGTTATGAGCATAACGTaa   >  1:20462555/1‑35 (MQ=255)
                                 ccccGACATTTGCCGGGGTTATGAGCATAACGTaa   <  1:18812732/35‑1 (MQ=255)
                                 ccccGACATTTGCCGGGGTTATGAGCATAACGTaa   <  1:14018188/35‑1 (MQ=255)
                                  cccGACATTTGCCGGGGTTATGAGCATAACGTAAt  <  1:16862292/35‑1 (MQ=255)
                                  |                                  
TGTTGTCTGCTTTCGCGCAGCACAATTAAAAAACCCCGACATTTGCCGGGGTTATGAGCATAACGTAAT  >  REL606/2919339‑2919407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.