Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,724,156 | 0 | G→C | 3.4% | 2.4 ‑14.5 0.0 | 241 | A84P (GCT→CCT) | srlR | DNA‑bindng transcriptional repressor |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Rejected: Prediction has biased read strand distribution supporting polymorphism. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/9): ref base (189/42): total (190/51) | ||||||||||
Fisher's exact test strand distribution p-value = 4.86e-07 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
Only 100 of 290 total aligned reads displayed.
CATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCGTTAGTTTTATTCATGATGGCGACTCAAT > REL606/2724122‑2724190 | catcaccacccACAAGAAAGAGCTGATTGCAGAAg < 1:10436221‑M2/24‑1 (MQ=255) catcaACACCCACAAGAAAGAGCTGATTGCAGAAg > 1:15570704/1‑35 (MQ=255) accaccacccACAAGAAAGAGCTGATTGCAGAAGc < 1:4316565‑M2/25‑1 (MQ=255) aacaccacccACAAGAAAGAGCTGATTGCAGAAGc < 1:11242965‑M2/25‑1 (MQ=255) tcaACACCCACAAGAAAGAGCTGATTGCAGAAGCt > 1:3717568/1‑35 (MQ=255) tcaACACCCACAAGAAAGAGCTGATTGCAGAAGCt > 1:122798/1‑35 (MQ=255) tcaACACCCACAAGAAAGAGCTGATTGCAGAAGCt > 1:19533621/1‑35 (MQ=255) cccccacccACAAGAAAGAGCTGATTGCAGAAGCt < 1:15432459‑M2/26‑1 (MQ=255) ccaccgcccACAAGAAAGAGCTGATTGCAGAAGCt < 1:16485849‑M2/26‑1 (MQ=255) ccaccacccACAAGAAAGAGCTGATTGCAGAAGCt < 1:4913352‑M2/26‑1 (MQ=255) ccaccacccACAAGAAAGAGCTGATTGCAGAAGCt < 1:12977909‑M2/26‑1 (MQ=255) acaccacccACAAGAAAGAGCTGATTGCAGAAGCt < 1:19724864‑M2/26‑1 (MQ=255) ccccacccACAAGAAAGAGCTGATTGCAGAAGCTg < 1:7554545‑M2/27‑1 (MQ=255) caccacccACAAGAAAGAGCTGATTGCAGAAGCTg < 1:7390228‑M2/27‑1 (MQ=255) caACACCCACAAGAAAGAGCTGATTGCAGAAGCTg > 1:14743605/1‑35 (MQ=255) caACACCCACAAGAAAGAGCTGATTGCAGAAGCTg > 1:17690919/1‑35 (MQ=255) caACACCCACAAGAAAGAGCTGATTGCAGAAGCTg > 1:7743436/1‑35 (MQ=255) caACACCCACAAGAAAGAGCTGATTGCAGAAGCTg > 1:1993311/1‑35 (MQ=255) cccaaccACAAGAAAGAGCTGATTGCAGAAGCTGc < 1:3407889‑M2/28‑1 (MQ=255) accacccACAAGAAAGAGCTGATTGCAGAAGCTGc < 1:3594885‑M2/28‑1 (MQ=255) accacccACAAGAAAGAGCTGATTGCAGAAGCTGc < 1:7156724‑M2/28‑1 (MQ=255) accacccACAAGAAAGAGCTGATTGCAGAAGCTGc < 1:8769321‑M2/28‑1 (MQ=255) accacccACAAGAAAGAGCTGATTGCAGAAGCTGc < 1:1148497‑M2/28‑1 (MQ=255) accacccACAAGAAAGAGCTGATTGCAGAAGCTGc < 1:18071998‑M2/28‑1 (MQ=255) accacccACAAGAAAGAGCTGATTGCAGAAGATGc < 1:16804091‑M2/28‑1 (MQ=255) aaCACCCACAAGAAAGAGCTGATTGCAGAAGCTGc > 1:1268672/1‑35 (MQ=255) aaCACCCACAAGAAAGAGCTGATTGCAGAAGCTGc > 1:9792171/1‑35 (MQ=255) aaCACCCACAAGAAAGAGCTGATTGCAGAAGCTGc > 1:10641320/1‑35 (MQ=255) aaCACCCACAAGAAAGAGCTGATTGCAGAAGCTGc > 1:3214797/1‑35 (MQ=255) aaCACCCACAAGAAAGAGCTGATTGCAGAAGCTGc > 1:10114650/1‑35 (MQ=255) ccccccACAAGAAAGAGCTGATTGCAGAAGCTGcc < 1:6362212‑M2/29‑1 (MQ=255) ccacccACAAGAAAGAGCTGATTGCAGAAGCTGcc < 1:15895606‑M2/29‑1 (MQ=255) ccacccACAAGAAAGAGCTGATTGCAGAAGCTGcc < 1:8252350‑M2/29‑1 (MQ=255) acacCCACAAGAAAGAGCTGATTGCAGAAGCTGcc > 1:20576068/1‑35 (MQ=255) acacCCACAAGAAAGAGCTGATTGCAGAAGCTGcc > 1:20059891/1‑35 (MQ=255) cacccACAAGAAAGAGCTGATTGCAGAAGCTGCCg > 1:16153222‑M2/6‑35 (MQ=255) cacccACAAGAAAGAGCTGATTGCAGAAGCTGCCg > 1:4678642‑M2/6‑35 (MQ=255) acccACAAGAAAGAGCTGATTGCAGAATCTGCCGt > 1:4581886‑M2/5‑35 (MQ=255) acccACAAGAAAGAGCTGATTGCAGAAGCTGCCGt > 1:18415485‑M2/5‑35 (MQ=255) ccACAAGAAAGAGCTGATTGCAGAAGCTGCCGTTa > 1:6633581‑M2/3‑35 (MQ=255) ccACAAGAAAGAGCTGATTGCAGAAGCTGCCGTTa > 1:9917473‑M2/3‑35 (MQ=255) ccACAAGAAAGAGCTGATTGCAGAAGCTGCAGTTa < 1:19820487‑M2/33‑1 (MQ=255) cACAAGAAAGAGCTGATTGCAGAAGCTGCCGTTAg > 1:3776169‑M2/2‑35 (MQ=255) caAGAAAGAGCTGATTGCAGAAGCTGCAGTTAGtt < 1:2114827/35‑1 (MQ=255) aagaaagaGCTGATTGCAGAAGCTGCCGTTAGttt > 1:5338063/1‑35 (MQ=255) aagaaagaGCTGATTGCAGAAGCTGCCGTTAGttt > 1:852527/1‑35 (MQ=255) aagaaagaGCTGATTGCAGAAGCTGCCGTTAGttt > 1:9133353/1‑35 (MQ=255) agaaagaGCTGATTGCAGAAGCTGCCGTTAGtttt > 1:6263986/1‑35 (MQ=255) agaaagaGCTGATTGCAGAAGCTGCCGTTAGtttt > 1:16201619/1‑35 (MQ=255) gaaagaGCTGATTGCAGAAGCTGCCGTTCGCTTTa > 1:16628520/1‑35 (MQ=37) gaaagaGCTGATTGCAGAAGCTGCCGTTAGTTTTa > 1:19979551/1‑35 (MQ=255) gaaagaGCTGATTGCAGAAGCTGCCGTTAGTTTTa > 1:19336120/1‑35 (MQ=255) gaaagaGCTGATTGCAGAAGCTGCCGTTAGTTTTa > 1:12344291/1‑35 (MQ=255) gaaagaGCTGATTGCAGAAGCTGCCGTTAGTTTTa > 1:16411484/1‑35 (MQ=255) aaagaGCTGATTGCAGAAGCTGCCGTTAGTTTTAt > 1:15802077/1‑35 (MQ=255) aaagaGCTGATTGCAGAAGCTGCCGTTAGTTTTAt > 1:13144714/1‑35 (MQ=255) aagaGCTGATTGCAGAAGCTGCCGGTAGTTTTAtt > 1:18813260/1‑35 (MQ=255) agagCTGATTGCAGAAGCTGCCGTTAGTTTTTTTc > 1:9612886/1‑35 (MQ=255) agagCTGATTGCAGAAGCTGCCGTTAGTTTTATTc > 1:1160611/1‑35 (MQ=255) agagCTGATTGCAGAAGCTGCCGTTAGTTTTATTc > 1:14898161/1‑35 (MQ=255) gagCTGATTGCAGAAGCTGCCGTTAGTTTTATTCa > 1:90200/1‑35 (MQ=255) gagCTGATTGCAGAAGCTGCCGTTAGTTTTATTCa > 1:8543943/1‑35 (MQ=255) agCTGATTGCAGACCCTGCCGTTAGTTTTATTCat < 1:18238180/35‑1 (MQ=37) agCTGATTGCAGAAGCTGCCGTTAGTTTTATTCat > 1:12031524/1‑35 (MQ=255) agCTGATTGCAGAAGCTGCCGTTAGTTTTATTCat > 1:10085723/1‑35 (MQ=255) gCTGATTTCAGAAGCTGCCGTTAGTTTTATTCatg > 1:598237/1‑35 (MQ=255) gCTGATTGCAGACCCTGCCGTTAGTTTTATTCatg < 1:19003478/35‑1 (MQ=37) cTGATTGCAGAAGCTGCCGTTAGTTTTATTCatga > 1:20288598/1‑35 (MQ=255) cTGATTGCAGAAGCTGCCGTTAGTTTTATTCatga > 1:2221757/1‑35 (MQ=255) tGATTGCAGAAGCTGCCGTTAGTTTTATTCatgat > 1:9782864/1‑35 (MQ=255) tGATTGCAGAAGCTGCCGTTAGTTTTATTCatgat > 1:19608350/1‑35 (MQ=255) tGATTGCAGAACCTGCCGTTAGTTTTATTCatgat < 1:8031432/35‑1 (MQ=255) gATTGCAGACCCTGCCGTTAGTTTTATTCatgatg < 1:731997/35‑1 (MQ=37) gATTGCAGAAGCTGCCGTTAGTTTTATTCatgatg > 1:5653454/1‑35 (MQ=255) gATTGCAGAAGCTGCCGTTAGTTTTATTCatgatg > 1:700608/1‑35 (MQ=255) gATTGCAGAACCTGCCGTTAGTTTTATTCatgatg < 1:6675460/35‑1 (MQ=255) aTTGCAGAAGCTGCCGTTAGTTTTATTCATGATgg > 1:13258844/1‑35 (MQ=255) ttGCAGAAGCTGCCGTTAGTTTTATTCATGATggg > 1:17085235/1‑34 (MQ=255) ttGCAGAAGCTGCCGTTAGTTTTATTCATGATGGc < 1:11102233/35‑1 (MQ=255) ttGCAGAACCTGCCGTTAGTTTTATTCATGATGGc < 1:15184220/35‑1 (MQ=255) tGCAGAAGCTGCCGTTAGTTTTATTCATGATGGCg > 1:17833052/1‑35 (MQ=255) tGCAGAAGCTGCCGTTAGTTTTATTCATGATGGCg > 1:254482/1‑35 (MQ=255) tGCAGAAGCTGCCGTTAGGTTTATTCATGATGGCg > 1:8213768/1‑35 (MQ=255) gCAGACCCTGCCGTTAGTTTTATTCATGATGGCGa < 1:14482664/35‑1 (MQ=37) gCAGAAGCTGCCGTTAGTTTTATTCATGATGGCGa > 1:3618076/1‑35 (MQ=255) gCAGAAGCTGCCGTTAGTTTTATTCATGATGGCGa > 1:20425119/1‑35 (MQ=255) gCAGAAGCTGCCGTTAGTTTTATTCATGATGGCGa > 1:2674981/1‑35 (MQ=255) cAGAACCTGCCGTTAGTTTTATTCATGATGGCGAc < 1:4982537/35‑1 (MQ=255) cAGAACCTGCCGTTAGTTTTATTCATGATGGCGAc < 1:17540248/35‑1 (MQ=255) aGAAGCTGCCGTTAGTTTTATTCATGATGGCGACt > 1:2843002/1‑35 (MQ=255) aGAAGCTGCCGTTAGTTTTATTCATGATGGCGACt > 1:17427381/1‑35 (MQ=255) aGAACCTGCCGTTAGTTTTATTCATGATGGCGACt < 1:11770844/35‑1 (MQ=255) aaGCTGCCGTTAGTTTTATTCATGATGGCGACTCa > 1:13985156/1‑35 (MQ=255) aaGCTGCCGTTAGTTTTATTCATGATGGCGACTCa > 1:16887181/1‑35 (MQ=255) aGCTGCCGTTAGTTTTATTCATGATGGCGACTCaa > 1:3084946/1‑35 (MQ=255) aGCTGCCGTTAGTTTTATTCATGATGGCGACTCaa > 1:2313065/1‑35 (MQ=255) gCTGCCGTTAGTTTTATTCATGATGGCGCCTCaat > 1:13585171/1‑35 (MQ=255) gCTGCCGTTAGTTTTATTCATGATGGCGACTCaat > 1:4122528/1‑35 (MQ=255) gCTGCCGTTAGTTTTATTCATGATGGCGACTCaat > 1:14834275/1‑35 (MQ=255) gCTGCCGTTAGTTTTATTCATGATGGCGACTCaat < 1:15507151/35‑1 (MQ=255) | CATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCGTTAGTTTTATTCATGATGGCGACTCAAT > REL606/2724122‑2724190 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |