New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1857572 = | NA (NA) | 13 (0.200) | 4/30 | NT | 17.7% | noncoding (509/1343 nt) | IS186 | repeat region |
? | REL606 | = 2118058 | 97 (0.940) | coding (720/2292 nt) | ECB_02004 | Replication gene A protein |
Only 100 of 271 total aligned reads displayed.
GTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCtgctgtcgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1857605‑1857572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCTGTCGGGGAGGTCAATAAAGACCGTTCTCCTTATGCCAGT < REL606/2118058‑2118016 GTTTGCTCAAATCGGTCCAGCCGTTCAGCGTCTCT > 1:15978204/1‑35 GTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCT > 1:17802898/1‑35 GTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCT > 1:1718195/1‑35 GTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCT > 1:14762300/1‑35 GTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCT > 1:14280535/1‑35 TTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTG > 1:994449/1‑35 TTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTG > 1:7047505/1‑35 TTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTG > 1:14450181/1‑35 TTGCGCAAATCGGTCCAGCGGTTCAGCGTCTCTGC < 1:3910688/35‑1 TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTtc > 1:4685476/1‑33 TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTcg > 1:1854517/1‑33 TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGC > 1:10602937/1‑35 TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGC > 1:151218/1‑35 TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGC > 1:3677361/1‑35 TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGC > 1:19093833/1‑35 TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGC > 1:7739277/1‑35 TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGC > 1:18740560/1‑35 TGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCT > 1:16615919/1‑35 TGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCT > 1:7519105/1‑35 GCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTG > 1:17231110/1‑35 GCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTG > 1:19968109/1‑35 CGCAAATCGGTCCAGCCGTTCAGCTTCTCTGCTGT > 1:5558672/1‑35 CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT > 1:19263195/1‑35 CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT > 1:14207289/1‑35 CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT > 1:221916/1‑35 CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT > 1:1360603/1‑35 CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT > 1:15843956/1‑35 CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT > 1:10689451/1‑35 CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT > 1:8690367/1‑35 CGCAAATCGCTCCAGCCGTTCAGCGTCTCTGCTGT < 1:15818020/35‑1 GCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTC > 1:17119352/1‑35 GCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTC > 1:19951989/1‑35 GCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTC > 1:14509735/1‑35 GCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTC > 1:2290636/1‑35 CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG > 1:6146370/1‑35 CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG > 1:2384375/1‑35 CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG > 1:2558615/1‑35 CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG > 1:5085996/1‑35 CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG > 1:955437/1‑35 CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG > 1:4505467/1‑35 CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG > 1:9715794/1‑35 CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG > 1:7207541/1‑35 AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGG > 1:12211204/1‑35 AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGG > 1:11399928/1‑35 AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGG > 1:2832053/1‑35 AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGG > 1:13045565/1‑35 AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGG > 1:8093000/1‑35 AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGG > 1:12058455/1‑35 AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGGCGG > 1:15325648/1‑35 AATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGG > 1:8853515/1‑35 AATCGGTCCAGCCGTTCAGCGTCTCTGCTGGCGGG > 1:10311398/1‑35 ATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGt > 1:17616236/1‑34 ATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGG > 1:16913177/1‑35 ATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGG > 1:15181918/1‑35 TCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGg > 1:13903530/1‑34 CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGttg > 1:12986713/1‑32 CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGttg > 1:18297659/1‑32 CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGtgg > 1:15870501/1‑32 CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGtg > 1:12436963/1‑33 CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGtg > 1:15073278/1‑33 CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGgg > 1:13694568/1‑33 CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGgg > 1:12653573/1‑33 GGTCCATCCGTTCAGCGTCTCTGCTGTCGGGGAGG > 1:18077954/1‑35 GGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGgtg > 1:3325673/1‑32 GGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGggt > 1:16345166/1‑32 GGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGgaa > 1:19679677/1‑32 GGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGTGG > 1:8484328/1‑35 GGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGGGG > 1:20184458/1‑35 GGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGGGG > 1:14670904/1‑35 GTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGTGGc > 1:3586023/1‑34 GTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGTGGT > 1:5493950/1‑35 GTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGGGGc > 1:20302370/1‑34 GTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGGGGT > 1:3516005/1‑35 GTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGGGGT > 1:4883276/1‑35 CCAGCCGTTCAGCGTCTCTGCTGTCGGGGTGGTCt > 1:9432320/1‑34 CCAGCCGTTCAGCGTCTCTGCTGTCGGGGTGGTCA > 1:6310693/1‑35 CCAGCCGTTCAGCGTCTCTGCTGTCGGGGAGGTta > 1:10145678/1‑33 CAGCCGTTCAGCGTCTCTGCTGTCGGGGGGGTCAA > 1:7341722/1‑35 CAGCCGTTCAGCGTCTCTGCTGTCGGGGAGGTCAA > 1:8016734/1‑35 CAGCCGTTCAGCGTCTCTGCTGTCGGGGAGCTCAA > 1:4012855/1‑35 AGCCGTTCAGCGTCTCTGCTGTCGGGTAGGTCAAa > 1:18985418/1‑34 GCTGTCGGGGAGGTCAATAAAGACCGTTCTCCTTA < 1:10171783/35‑1 GCTGTCGGGGAGGTCAATAAAGACCGTTCTCCTTA < 1:3170615/35‑1 CTGTCGGGGAGGTCAATAAAGACCGTTCTCCTTAT > 1:6434612/1‑35 CTGTCGGGGAGGTCAATAAAGACCGTGCTCCTTAT > 1:20437917/1‑35 TGTCGGGGAGGTCAATAAAGACCGTTCTCCTTATG < 1:5868829/35‑1 TGTCGGGGAGGTCAATAAAGACCGTTCTCCTTATG > 1:12797716/1‑35 GTCGGGGAGGTCAATAAAGACCGTTCTCCTTATGC < 1:13303446/35‑1 GTCGGGGAGGTCAATAAAGACCGTTCTCCTTATGC > 1:13107587/1‑35 TCGGGGAGGTCAATAAAGACCGTTCTCCTTATGCC > 1:10851816/1‑35 CGGGGATGTCAATAAAGACCGTTCTCCTTATGCCA > 1:11571037/1‑35 CGGGGAGGTCAATAAAGACCGTTCTCCTTATGCCA < 1:3845580/35‑1 CGGGGAGGTCAATAAAGACCGTTCTCCTTATGCCA > 1:15624857/1‑35 CGGGGAGGTCAATAAAGACCGTTCTCCTTATGCCA < 1:19328307/35‑1 GGGGAGGTCAATAAAGACCGTTCTCCTTATGCCAG > 1:13260850/1‑35 GGGGAGGTCAATAAAGACCGTTCTCCTTATGCCAG > 1:16059724/1‑35 GGGAGGTCAATAAAGACCGTTCTCCTTATGCCAGT < 1:11691587/35‑1 GGGAGGTCAATAAAGACCGTTCTCCTTATGCCAGT < 1:909217/35‑1 GGGAGGTCAATAAAGACCGTTCTCCTTATGCCAGT < 1:20591318/35‑1 GGGAGGTCAATAAAGACCGTTCTCCTTATGCAAGT < 1:8229558/35‑1 GTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCtgctgtcgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1857605‑1857572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCTGTCGGGGAGGTCAATAAAGACCGTTCTCCTTATGCCAGT < REL606/2118058‑2118016 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |