New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2836222 | 59 (0.570) | 12 (0.120) | 7/46 | NT | 15.4% | coding (29/396 nt) | ygdD | conserved inner membrane protein |
? | REL606 | = 4349299 | 75 (0.760) | intergenic (‑166/‑110) | yjeH/groES | predicted transporter/co‑chaperonin GroES |
GCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2836188‑2836222 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGGAAAAAGAAAAAAAATTCTGATCAGCACAAA < REL606/4349299‑4349266 GCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGG > 1:9735235/1‑35 GCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGG > 1:5374517/1‑35 GCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGG > 1:15284786/1‑35 GCCCAGAGCCACAAAAATGAAGCAGCTAATGGCGG > 1:2562129/1‑35 CCCAGAGCCACAAAAATGAAGCCGCTAATGGCGGG > 1:4006493/1‑35 CCCAGAGCCACAAAAATGAAGCCGCTAATGGCGGG > 1:3934002/1‑35 CCCAGAGCCACAAAAATGAAGCCGCTAATGGCGGG > 1:14687055/1‑35 CCAGAGCCACAAAAATGAAGCCGCTAATGGCGGGG > 1:7193411/1‑35 CCAGAGCCACAAAAATGAAGCCGCTAATGGCGGGG > 1:58400/1‑35 CCAGAGCCACAAAAATGAAGCCGCTAATGGCGGGG > 1:2863657/1‑35 CAGAGCCACAAAAATGAAGCCGCTAATGGCGGGGG > 1:10496118/1‑35 CAGAGCCACAAAAATGAAGCCGCTAATGGCGGGGG > 1:15319086/1‑35 AGAGCCACAAAAATGAAGCCGCTAATGGCGGGGGa > 1:14571760/1‑34 AGAGCCACAAAAATGAAGCCGCTAATGGCGGGGGa > 1:8868909/1‑34 AGCCACAAAAATGAAGCCGCTAATGGCGGGGGAAA > 1:1693075/1‑35 GCCACAAAAATGAAGCCGCTAATGGCGGGGGGAga > 1:7090406/1‑33 GCCACAAAAATGAAGCCGCTAATGGCGGGGGAAAA > 1:12384829/1‑35 GCCACAAAAATGAAGCCGCTAATGGCGGGGGAAAA > 1:7830177/1‑35 CCACAAAAATGAAGCCGCTAATGGCGGGGGGAAAc > 1:10596405/1‑34 CCACAAAAATGAAGCCGCTAATGGCGGGGGGAAAA > 1:8432535/1‑35 CACAAAAATGAAGCCGCTAATGGCGGGGGGAAAca > 1:5534186/1‑33 CACAAAAATGAAGCCGCTAATGGCGGGGGAAAAAA > 1:13607276/1‑35 CACAAAAATGAAGCCGCTAATGGCGGGGGAAAAAA > 1:18774791/1‑35 CAAAAATGAAGCCGCTAATGGCGGGGGAAAAAAGc > 1:8448551/1‑34 AAATGAAGCCGCTAATGGCGGGGGGAAAAAGAAAA > 1:9172282/1‑35 AATGAAGCCGCTAATGGCGGGGGGAAAAAGAAAAA > 1:8649812/1‑35 ATGAAGCCGCTAATGGCGGGGGGAAAAAGAATAAA > 1:2532559/1‑35 GGGGGAAAAAGAAAAAAAATTCTGATCAGCACAAA > 1:1828663/1‑35 GGGGGAAAAAGAAAAAAAATTCTGATCAGCACAAA > 1:7241996/1‑35 GCCCAGAGCCACAAAAATGAAGCCGCTAATGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2836188‑2836222 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGGAAAAAGAAAAAAAATTCTGATCAGCACAAA < REL606/4349299‑4349266 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |