New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3320231NA (NA)11 (0.180) 3/28 NT 25.5% intergenic (‑312/+118) tldD/yhdP predicted peptidase/conserved membrane protein, predicted transporter
?REL606 = 3686161 55 (0.540)coding (401/741 nt) yiaT hypothetical protein

CGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAT  >  REL606/3320221‑3320265
          |                                  
cGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTg            <  1:5126818/35‑1 (MQ=32)
cGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTg            <  1:12881510/35‑1 (MQ=32)
 atCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa           <  1:9942183/34‑1 (MQ=25)
  tCGCATCAGGCAACGGCTGCCGGATGCGGCGTGaa          <  1:2776713/35‑1 (MQ=38)
  tCGCATCAGGCAACGGCTGCCGGATGCGGCGTGaa          <  1:18458558/35‑1 (MQ=38)
   cccATCAGGCAACGGCTGCCGGATGCGGCGTGAAc         <  1:18415383/33‑1 (MQ=255)
   cacATCAGGCACCGGCTGCCGGATGCGGCGTGAAc         <  1:20443678/33‑1 (MQ=14)
   cGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc         <  1:6346433/35‑1 (MQ=38)
    gCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg        <  1:5186678/35‑1 (MQ=38)
    gCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg        <  1:4601435/35‑1 (MQ=38)
    gCATCAGGCAACGGCTGCCAGATGCGGCGTGAACg        <  1:8967426/35‑1 (MQ=255)
     cATCAGGCAACGGCTGCCGGATGCGGCGTGAACGc       <  1:15770177/35‑1 (MQ=38)
     cATCAGGCAACGGCTGCCGGATGCGGCGTGAACGc       <  1:8649199/35‑1 (MQ=38)
      aTCAGGCACCGGCTGCCGGATGCGGCGTGAACGcc      <  1:18778651/35‑1 (MQ=255)
       tCAGGCAACGGCTGCCGGATGCGGCGTGAACGccc     <  1:10891520/35‑1 (MQ=40)
       tCAGGCAACGGCTGCCGGATGCGGCGTGAACGccc     <  1:3918446/35‑1 (MQ=40)
        gaGGGAACGGCTGCCGGATGCGGCGTGAACGCCCt    <  1:15508014/34‑1 (MQ=255)
        cgggCAACGGCTGCCGGATGCGGCGTGAACGCCCt    <  1:15507465/33‑1 (MQ=255)
        cAGGCACCGGCTGCCGGATGCGGCGTGAACGCCCt    <  1:3986136/35‑1 (MQ=255)
        cAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCt    <  1:13836857/35‑1 (MQ=255)
        cAGCCAACGGCTGCCGGATGCGGCGTGAACGCCCt    <  1:11894280/35‑1 (MQ=255)
         aGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTa   <  1:11120422/35‑1 (MQ=255)
         aGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTa   <  1:5239008/35‑1 (MQ=255)
         aGGCAACGGCTGCCGGATGCGGAGTGAACGCCCTa   <  1:1401871/35‑1 (MQ=255)
          ggCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt  <  1:2506746/35‑1 (MQ=255)
          |                                  
CGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAT  >  REL606/3320221‑3320265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.