New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 73827923 (0.220)14 (0.230) 3/28 NT 31.3% coding (1582/1767 nt) sdhA succinate dehydrogenase flavoprotein subunit
?REL606 = 3686151 48 (0.800)coding (411/741 nt) yiaT hypothetical protein

Only 100 of 129 total aligned reads displayed.

TCTGGAACTGGATAACCTGATGGAAACGGCGTATGCAACGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/738236‑738279
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacggctgGGTGGGGGAGCTATCGGTATTCCACAAAATGCAG  <  REL606/3686151‑3686118
                                                                              
TCTGGAACTGGATAACCTGATGGAAACGGCGTATG                                             >  1:18684876/1‑35
TCTGGAACTGGATAACCTGATGGAAACGGCGTATG                                             <  1:4272242/35‑1
TCTGGAACTGGATAACCTGATGGAAACGGCGTATG                                             <  1:7995712/35‑1
TCTGGAACTGGATAACCTGATGGAAACGGCGTATG                                             <  1:20045083/35‑1
 CTGGAACTGGATAACCTGATGGAAGCGGCGTATGC                                            <  1:16347321/35‑1
 CTGGAACTGGATAACCTGATGGAAACGGCGTATGC                                            >  1:906845/1‑35
 CTGGAACTGGATAACCTGATGGAAACGGCGTATGC                                            <  1:6305565/35‑1
 CTGGAACTGGATAACCTGATGGAAACGGCGTATGC                                            >  1:2697492/1‑35
 CTGGAACTGGATAACCTGATGGAAACGGCGTATGC                                            >  1:8091327/1‑35
 CTGGAACTGGATAACCTGATGGAAACGGCGTATGC                                            <  1:20301115/35‑1
 CTGGAACTGGATAACCTGATGGAAACGGCGTATGC                                            >  1:17783427/1‑35
  TGGAACTGGATAACCTGATGGAAACGGCGTATGCA                                           <  1:7121301/35‑1
  TGGAACTGGATAACCTGATGGAAACGGCGTATGCA                                           >  1:7505602/1‑35
  TGGAACTGGATAACCTGATGGAAACGGCGTATGCA                                           <  1:12856100/35‑1
   GGAACTGGATAACCTGATGGAAACGGCGTATGCAA                                          >  1:5369132/1‑35
   GGAACTGGATAACCTGATGGAAACGGCGTATGCAA                                          >  1:13063864/1‑35
   GGAACTGGATAACCTGATGGAAACGGCGTATGCAA                                          >  1:19537060/1‑35
   GGAACTGGATAACCTGATGGAAACGGCGTATGCAA                                          >  1:8372968/1‑35
    GAACTGGATAACCTGATGGAAACGGCGTATGCAAC                                         >  1:17310566/1‑35
    GAACTGGATAACCTGATGGAAACGGCGTATGCAAC                                         >  1:1172907/1‑35
    GAACTGGATAACCTGATGGAAACGGCGTATGCAAC                                         <  1:11522027/35‑1
    GAACTGGATAACCTGATGGAAACGGCGTATGCAAC                                         <  1:4978097/35‑1
    GAACTGGATAACCTGATGGAAACGGCGTATGCAAC                                         >  1:1886786/1‑35
    GAACTGGATAACCTGATGGAAACGGCGTATGCAAC                                         >  1:18838757/1‑35
    GAACTGGATAACCTGATGGAAACGGCGTATGCAAC                                         <  1:5689968/35‑1
     AACTGGATAACCTGATGGAAACGGCGTATGCAACG                                        <  1:14160939/35‑1
      ACTGGATAACCTGATGGAAACGGCGTATGCAACGG                                       >  1:13965280/1‑35
      ACTGGATAACCTGATGGAAACGGCGTATGCAACGG                                       >  1:3320611/1‑35
      ACTGGATAACCTGATGGAAACGGCGTATGCAACGG                                       <  1:3044789/35‑1
      ACTGGATAACCTGATGGAAACGGCGTATGCAACGG                                       >  1:1037805/1‑35
       CTGGATAACCTGATGGAAACGGCGTATGCAACGGC                                      >  1:3436607/1‑35
       CTGGATAACCTGATGGAAACGGCGTATGCAACGGC                                      >  1:1552232/1‑35
       CTGGATAACCTGATGGAAACGGCGTATGCAACGGC                                      <  1:13975150/35‑1
       CTGGATAACCTGATGGAAACGGCGTATGCAACGGC                                      <  1:13732494/35‑1
        gGGATAACCTGATGGAAACGGCGTATGCAACGGCT                                     <  1:7469267/34‑1
        TGGATAACCTGATGGAAACGGCGTATGCAACGGCT                                     <  1:5759080/35‑1
        TGGATAACCTGATGGAAACGGCGTATGCAACGGCT                                     >  1:11132658/1‑35
        TGGATAACCTGATGGAAACGGCGTATGCAACGGCT                                     >  1:9574704/1‑35
          GATAACCTGATGGAAACGGCGTATGCAACGGCTGG                                   >  1:7015642/1‑35
           ATAACCTGATGGAAACGGCGTATGCAACGGCTGGG                                  >  1:15132670/1‑35
           ATAACCTGATGGAAACGGCGTATGCAACGGCTGGG                                  >  1:7711143/1‑35
           ATAACCTGATGGAAACGGCGTATGCAACGGCTGGG                                  >  1:8459912/1‑35
            TAACCTGATGGAAACGGCGTATGCAACGGCTGGGg                                 >  1:20549116/1‑34
            TAACCTGATGGAAACGGCGTATGCAACGGCTGGGg                                 >  1:18353451/1‑34
            TAACCTGATGGAAACGGCGTATGCAACGGCTGGGg                                 >  1:8587025/1‑34
             AACCTGATGGAAACGGCGTATGCAACGGCTGGGgg                                >  1:5314132/1‑33
             AACCTGATGGAAACGGCGTATGCAACGGCTGGGgg                                >  1:14845854/1‑33
             AACCTGATGGAAACGGCGTATGCAACGGCTGGGgg                                >  1:13481049/1‑33
              ACCTGATGGAAACGGCGTATGCAACGGCTGGGggt                               >  1:19847067/1‑32
              ACCTGATGGAAACGGCGTATGCAACGGCTGGGGGG                               >  1:13464865/1‑35
              ACCTGATGGAAACGGCGTATGCAACGGCTGGGGGG                               >  1:12917685/1‑35
              ACCTGATGGAAACGGCGTATGCAACGGCTGGGGGG                               >  1:7764397/1‑35
              ACCTGATGGAAACGGCGTATGCAACGGCTGGGGGG                               >  1:20189968/1‑35
               CCTGATGGAAACGGCGTATGCAACGGCTGGGGGGG                              >  1:6558491/1‑35
               CCTGATGGAAACGGCGTATGCAACGGCTGGGGGGG                              >  1:12125571/1‑35
               CCTGATGGAAACGGCGTATGCAACGGCTGGGGGGG                              >  1:10584170/1‑35
               CCTGATGGAAACGGCGTATGCAACGGCTGGGGGGG                              >  1:10006171/1‑35
               CCTGATGGAAACGGCGTATGCAACGGCTGGGGGGG                              >  1:20097752/1‑35
                CTGATGGAAACGGCGTATGCAACGGCTGGGGGGGG                             >  1:12276588/1‑35
                CTGATGGAAACGGCGTATGCAACGGCTGGGGGGGG                             >  1:14818217/1‑35
                CTGATGGAAACGGCGTATGCAACGGCTGGGGGGGG                             >  1:14944317/1‑35
                 TGATGGAAACGGCGTATGCAACGGCTGGGGGGGGG                            >  1:17895188/1‑35
                 TGATGGAAACGGCGTATGCAACGGCTGGGGGGGGG                            >  1:7092237/1‑35
                 TGATGGAAACGGCGTATGCAACGGCTGGGGGGGGG                            >  1:5052974/1‑35
                  GATGGAAACGGCGTATGCAACGGCTGGGGGGGGGg                           >  1:10007689/1‑34
                                  GCAACGGCTGGGTGGGGGAGCTATCGGTATTCCAC           <  1:1821544/35‑1
                                  GCAACCGCTGGGTGGGGGAGCTATCGGTATTCCAC           <  1:2545726/35‑1
                                    AACGGCTGGGTGGGGGAGCTATCGGTATTCCACAA         <  1:12533285/35‑1
                                     ACGGCTGGGTGGGGGAGCTATCGGTATTCCACAAA        <  1:19052157/35‑1
                                     ACGGCTGGGTGGGGGAGCTATCGGTATTCCACAAA        <  1:11868994/35‑1
                                     ACGGCTGGGTGGGGGAGCTATCGGTATTCCACAAA        <  1:15424540/35‑1
                                     ACGGCTGGGTGGGGGAGCTATAGGTATTCCACAAA        <  1:785341/35‑1
                                      CGGCTGGGTGGGGGAGCTATCGGTATTCCACAAAA       <  1:9747988/35‑1
                                      CGGCTGGGGGGGGGAGCTATCGGTATTCCACAAAA       >  1:18567096/1‑35
                                       GGCTGGGTGGGGGAGCTATCGGTATTCCACAAAAT      >  1:5536708/1‑35
                                       GGCTGGGTGGGGGAGCTATCGGTATTCCACAAAAT      <  1:15606344/35‑1
                                       GGCTGGGTGGGGGAGCTATCGGTATTCCACAAAAT      <  1:2389011/35‑1
                                       GGCTGGGTGGGGGAGCTATCGGTATTCCACAAAAT      <  1:14715631/35‑1
                                       GGCTGGGTGGGGGAGCTATCGGTATTCCACAAAAT      <  1:12643955/35‑1
                                       GGCTGGGTGGGGGAGCTATCGGGATTCCACAAAAT      >  1:2887404/1‑35
                                        GCTGGGTGGGGGAGCTATCGGTATTCCACAAAATG     <  1:14931183/35‑1
                                        GCTGGGTGGGGGAGCTATCGGTATTCCACAAAATG     <  1:9119499/35‑1
                                        GCTGGGTGGGGGAGCTATCGGTATTCCACAAAATG     >  1:6690039/1‑35
                                        GCTGGGTGGGGGAGCTATCGGTATTCCACAAAATG     <  1:3286444/35‑1
                                         tTGGGTGGGGGAGCTATCGGTATTCCACAAAATGC    <  1:5690885/34‑1
                                         CTGGGTGGGGGAGCTATGGGTATTCCACAAAATGC    >  1:16654990/1‑35
                                         CTGGGTGGGGGAGCTATCGGTATTCCACAAAATGC    <  1:10957298/35‑1
                                         CTGGGTGGGGGAGCTATCGGTATTCCACAAAATGC    <  1:15936037/35‑1
                                         CTGGGTGGGGGAGCTATCGGTATTCCACAAAATGC    <  1:19370106/35‑1
                                          TGGGTTGGGGAGCTATCGGTATTCCACAAAATGCA   >  1:11538173/1‑35
                                          TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA   <  1:4535986/35‑1
                                          TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA   >  1:14267212/1‑35
                                          TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA   <  1:4661692/35‑1
                                          TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA   <  1:11429928/35‑1
                                          TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA   <  1:15989903/35‑1
                                          TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA   >  1:9132011/1‑35
                                          TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA   >  1:9488132/1‑35
                                           GGGTGGGGGAGCTATCGGTATTCCACAAAATGCAG  <  1:7449033/35‑1
                                           GGGTGGGGGAGCTATCGGTATTCCACAAAATGCAG  <  1:2788312/35‑1
                                           GGGTGGGGGAGCTATCGGTATTCCACAAAATGCAG  <  1:18796831/35‑1
                                                                              
TCTGGAACTGGATAACCTGATGGAAACGGCGTATGCAACGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/738236‑738279
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacggctgGGTGGGGGAGCTATCGGTATTCCACAAAATGCAG  <  REL606/3686151‑3686118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.