New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 201768335 (0.340)14 (0.170) 3/38 NT 18.8% intergenic (‑178/+89) yeeF/yeeY predicted amino‑acid transporter/predicted DNA‑binding transcriptional regulator
?REL606 = 2919373 93 (1.140)intergenic (+6/+37) idi/lysS isopentenyl‑diphosphate delta‑isomerase/lysine tRNA synthetase, constitutive

Only 100 of 132 total aligned reads displayed.

GAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGC  >  REL606/2017649‑2017717
                                  |                                  
gAAGCAAAAAATAACCGACGCTGATGAAACGTCGG                                    >  1:18311982‑M1/1‑35 (MQ=255)
 aaaaaaaaaacccCCGACGCTGATGAAACGTCGGt                                   >  1:16882405‑M1/14‑35 (MQ=255)
 aaaaaaaaaacccCCGACGCTGATGAAACGTCGGt                                   >  1:6223666‑M1/14‑35 (MQ=255)
 aaGCAAAAAATAACCGACGCTGATGAAACGTCGGg                                   >  1:10554303‑M1/1‑34 (MQ=255)
  aaaaaaaaacccCCGACGCTGATGAAACGTCGGtt                                  >  1:10243371‑M1/13‑35 (MQ=255)
  aGCAAAAAATAACCGACGCTGATGAAACGTCGGgg                                  >  1:14884115‑M1/1‑33 (MQ=255)
  aGCAAAAAATAACCGACGCTGATGAAACGTCGGgg                                  >  1:6752896‑M1/1‑33 (MQ=255)
   gCAAAAAATAACCGACGCTGATGAAACGTCGGggt                                 >  1:3748288‑M1/1‑32 (MQ=255)
   gCAAAAAATAACCGACGCTGATGAAACGTCGGggt                                 >  1:13223610‑M1/1‑32 (MQ=255)
   aaaaaaaacccCCGACGCTGATGAAACGTCGGttt                                 >  1:5702640‑M1/12‑35 (MQ=255)
    cAAAAAATAACCGACGCTGATGAAACGTCGGggtt                                >  1:19347786‑M1/1‑31 (MQ=255)
    aaaaaaccccCCGACGCTGATGAAACGTCGGtttt                                >  1:10421962‑M1/11‑35 (MQ=255)
    aaaaaaacccCCGACGCTGATGAAACGTCGGtttt                                >  1:15893402‑M1/11‑35 (MQ=255)
    aaaaaaacccCCGACGCTGATGAAACGTCGGtttt                                >  1:8058193‑M1/11‑35 (MQ=255)
     aaaaaaTAACCGACGCTGATGAAACGTCGGggttt                               >  1:13783270‑M1/1‑30 (MQ=255)
     aaaaaaTAACCGACGCTGATGAAACGTCGGggttt                               >  1:15289764‑M1/1‑30 (MQ=255)
      aaaaccccCCGACGCTGATGAAACGTCGGTTTTTa                              >  1:5798182‑M1/9‑35 (MQ=255)
      aaaaacccCCGACGCTGATGAAACGTAGGTTTTTa                              >  1:5424980‑M1/9‑35 (MQ=255)
      aaaaacccCAGACGCTGATGAAACGTCGGTTTTTa                              >  1:902871‑M1/9‑35 (MQ=255)
       aaaccccCCGACGCTGATGAAACGTCGGTTTTTAg                             >  1:10934208‑M1/8‑35 (MQ=255)
       aaaacccCCGACGCTGATGAAACGTCGGTTTTTAg                             >  1:10625995‑M1/8‑35 (MQ=255)
       aaaaTAACCGACGCTGATGAAACGTCGGgtttttg                             >  1:18455566‑M1/1‑28 (MQ=255)
       aaaaTAACCGACGCTGATGAAACGTCGGggttttt                             >  1:8859657‑M1/1‑28 (MQ=255)
       aaaaTAACCGACGCTGATGAAACGTCGGggttttt                             >  1:14657661‑M1/1‑28 (MQ=255)
        aaccccCCGACGCTGATGAAACGTCGGTTTTTAGt                            >  1:20276429‑M1/7‑35 (MQ=255)
        aaacccCCGACGCTGATGAAACGTCGGTTTTTAGt                            >  1:19030614‑M1/7‑35 (MQ=255)
        aaaTAACCGACGCTGATGAAACGTCGGggtttttt                            >  1:3466032‑M1/1‑27 (MQ=255)
        aaaTAACCGACGCTGATGAAACGTCGGggtttttt                            >  1:15369435‑M1/1‑27 (MQ=255)
        aaaTAACCGACGCTGATGAAACGTCGGggtttttg                            >  1:11931193‑M1/1‑27 (MQ=255)
        aaaTAACCGACGCTGATGAAACGTCGGggttttgt                            >  1:2611915‑M1/1‑27 (MQ=255)
         aaTAACCGACGCTGATGAAACGTCGGggttttgtc                           >  1:19596341‑M1/1‑26 (MQ=255)
          acccCCGACGCTGATGAAACGTCGGTTTTTAGTCa                          >  1:1279604‑M1/5‑35 (MQ=255)
          aTAACCGACGCTGATGAAACGTCGGggttttttta                          >  1:17641764‑M1/1‑25 (MQ=255)
           tAACCGACGCTGATGAAACGTCGGggtttttttat                         >  1:3743737‑M1/1‑24 (MQ=255)
            ccCCGACGCTGATGAAACGTCGGTTTTTAGTCAtt                        >  1:17216064‑M1/3‑35 (MQ=255)
             aCCGACGCTGATGAAACGTCGGGGTTTTGTCAttt                       >  1:9872623/1‑35 (MQ=25)
               CGACGCTGATGAAACGTCGGTTTTTAGTCAttttt                     >  1:11165611‑M1/1‑35 (MQ=255)
               CGACGCTGATGAAACGTCGGTTTTTAGTCAttttt                     >  1:18318872‑M1/1‑35 (MQ=255)
               CGACGCTGATGAAACGTCGGTTTTTAGTAAttttt                     >  1:3036473‑M1/1‑35 (MQ=255)
                gACGCTGATGAAACGTCGGGGTTTTGTTTtttttt                    >  1:17469634/1‑35 (MQ=12)
                 aCGCTGATGAAACGTCGGTTTTTAGTCATTTTTTg                   <  1:15995449/35‑1 (MQ=255)
                 aCGCTGATGAAACGTCGGTTTTTAGTCATTTTTTg                   <  1:8343815/35‑1 (MQ=255)
                 aCGCTGATGAAACGTCGGTTTTTAGTCATTTTTTg                   <  1:6447688/35‑1 (MQ=255)
                  cGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGa                  <  1:10454294/35‑1 (MQ=255)
                  cGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGa                  <  1:1512009/35‑1 (MQ=255)
                  cGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGa                  <  1:16092692/35‑1 (MQ=255)
                   gCTGATGAAACGTCGGTTTTTAGTCATTTTTTGAc                 <  1:14273447/35‑1 (MQ=255)
                   gCTGATGAAACGTCGGTTTTTAGTCATTTTTTGAc                 <  1:6173716/35‑1 (MQ=255)
                   gCTGATGAAACGTCGGTTTTTAGTCATTTTTTGAc                 <  1:2842051/35‑1 (MQ=255)
                   gCTGATGAAACGTCGGTTTTTAGTCATTTTTTGAc                 <  1:9084289/35‑1 (MQ=255)
                   gCTGATGAAACGTCGGGTTTTTGTTAttttttttt                 >  1:4974700/1‑32 (MQ=19)
                    cTGATGAAACGTCGGTTTTTAGTCATTTTTTGACa                <  1:14123993/35‑1 (MQ=255)
                    cTGATGAAACGTCGGTTTTTAGTCATTTTTTGACa                <  1:15313911/35‑1 (MQ=255)
                    cTGATGAAACGTCGGTTTTTAGTCATTTTTTGACa                <  1:17503587/35‑1 (MQ=255)
                     tgatgaAACGTCGGTTTTTAGTCATTTTTTGACAg               <  1:10026325/35‑1 (MQ=255)
                     tgatgaAACGTCGGTTTTTAGTCATTTTTTGACAg               <  1:11061956/35‑1 (MQ=255)
                      gatgaAACGTCGGTTTTTAGTCAGTTTTTGACAgc              <  1:2603704/35‑1 (MQ=255)
                         gaAACGTCGGTTTTTAGTCATTTTTTGACAgcggc           <  1:17634506/35‑1 (MQ=255)
                          aaaCGTCGGTTTTTAGTCATTTTTTGACAgcggcg          <  1:8464531/35‑1 (MQ=255)
                          aaaCGTCGGTTTTTAGTCATTTTTTGACAgcggcg          <  1:11491379/35‑1 (MQ=255)
                             cGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCAt       <  1:12416193/35‑1 (MQ=255)
                             cGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCAt       <  1:5589237/35‑1 (MQ=255)
                              gtaggTTTTTAGTCATTTTTTGACAGCGGCGCAtt      <  1:19567666/32‑1 (MQ=255)
                              ggcggggttttttaattgtgctgcgcgaaagcaga      <  1:2271413‑M1/33‑31 (MQ=255)
                              gTCGGggttttttaattgtgctgcgcgaaagcaga      >  1:16438548‑M1/1‑5 (MQ=255)
                              gTCGGggttttttaattgtgctgcgcgaaagcaga      <  1:445198‑M1/35‑31 (MQ=255)
                              gTCGGggttttttaattgtgctgcgcgaaagcaga      <  1:3834622‑M1/35‑31 (MQ=255)
                              gTCGGggttttttaattgtgctgcgcgaaagcaga      <  1:18967905‑M1/35‑31 (MQ=255)
                              gTCGGggttttttaattgtgctgcgcgaaagcaga      <  1:278075‑M1/35‑31 (MQ=255)
                              gTCGGTTTTTAGTCATTTTTTGACAGCGGCGCAtt      <  1:20376526/35‑1 (MQ=255)
                              gTCGGTTTTTAGTCATTTTTTGACAGCGGCGCAtt      <  1:7213018/35‑1 (MQ=255)
                              gTCGGTTTTTAGTCATTTTTTGACAGCGGCGCAtt      <  1:12177496/35‑1 (MQ=255)
                              gTCGGTTTTTAGTCATTTTTTGACAGCGGCGCAtt      <  1:6475675/35‑1 (MQ=255)
                               tCGGggttttttaattgtgctgcgcgaaagcagac     <  1:9505922‑M1/35‑32 (MQ=255)
                               tCGGggttttttaattgtgctgcgcgaaagcagac     >  1:18722753‑M1/1‑4 (MQ=255)
                               tCGGggttttttaattgtgctgcgcgaaagcagac     <  1:18538335‑M1/35‑32 (MQ=255)
                               tCGGTTTTTAGTCATTTTTTGACAGCGGCGCATtg     <  1:17986801/35‑1 (MQ=255)
                               tCGGTTTTTAGTCATTTTTTGACAGCGGCGCATtg     <  1:18034814/35‑1 (MQ=255)
                                cGGggttttttaattgtgctgcgcgaaagcagaca    >  1:10309701‑M1/1‑3 (MQ=255)
                                cGGggttttttaattgtgctgcgcgaaagcagaca    >  1:9081978‑M1/1‑3 (MQ=255)
                                cGGggttttttaattgtgctgcgcgaaagcagaca    >  1:6147075‑M1/1‑3 (MQ=255)
                                cGGTTTTTAGTCATTTTTTGACAGCGGCGCATtgt    >  1:979406/1‑35 (MQ=255)
                                cGGTTTTTAGTCATTTTTTGACAGCGGCGCATtgt    <  1:911950/35‑1 (MQ=255)
                                cGGTTTTTAGTCATTTTTTGACAGCGGCGCATtgt    >  1:8768002/1‑35 (MQ=255)
                                cGGTTTTTAGTCATTTTTTGACAGCGGCGCATtgt    <  1:7496073/35‑1 (MQ=255)
                                cGGTTTTTAGTCATTTTTTGACAGCGGCGCATtgt    <  1:7398207/35‑1 (MQ=255)
                                cGGTTTTTAGTCATTTTTTGACAGCGGCGCATtgt    <  1:5276950/35‑1 (MQ=255)
                                cGGTTTTTAGTCATTTTTTGACAGCGGCGCATtgt    <  1:5531864/35‑1 (MQ=255)
                                 ggggttttttaattgtgctgcgcgaaagcagacaa   >  1:17716208‑M1/1‑2 (MQ=255)
                                 ggggttttttaattgtgctgcgcgaaagcagacaa   >  1:11531696‑M1/1‑2 (MQ=255)
                                 ggggttttttaattgtgctgcgcgaaagcagacaa   >  1:10960839‑M1/1‑2 (MQ=255)
                                 ggggttttttaattgtgctgcgcgaaagcagacaa   >  1:17449606‑M1/1‑2 (MQ=255)
                                 ggggttttttaattgtgctgcgcgaaagcagacaa   <  1:18486562‑M1/35‑34 (MQ=255)
                                 ggTTTTTAGTCATTTTTTGACAGCGGCGCATtgtg   <  1:14603376/35‑1 (MQ=255)
                                 ggTTTTTAGTCATTTTTTGACAGCGGCGCATtgtg   >  1:18532487/1‑35 (MQ=255)
                                  gggttttttaattgtgctgcgcgaaagcngacaan  >  1:516685‑M1/1‑1 (MQ=255)
                                  gggttttttaattgtgctgcgcgaaagcagacaac  >  1:18655976‑M1/1‑1 (MQ=255)
                                  gggttttttaattgtgctgcgcgaaagcagacaac  >  1:5411627‑M1/1‑1 (MQ=255)
                                  gTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGc  >  1:18137725/1‑35 (MQ=255)
                                  gTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGc  >  1:13220581/1‑35 (MQ=255)
                                  |                                  
GAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGC  >  REL606/2017649‑2017717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.