New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1590579 = | 43 (0.420) | 11 (0.140) | 3/38 | NT | 20.2% | intergenic (+294/+147) | ydeE/ydeH | predicted transporter/hypothetical protein |
? | REL606 | = 3487475 | 53 (0.650) | coding (608/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
Only 100 of 126 total aligned reads displayed.
CACTTCAACCGCATGATTGAGCAGATCGAAAAAGTGGCGATCAAATCCCGCGCGCCGATTCTGCTTAAC > REL606/3487441‑3487509 | cACTTCAACCGCATGATTGAGCAGATCGAAAAAGt < 1:15750695/35‑1 (MQ=255) cACTTCAACCGCATGATTGAGCAGATCGAAAAAGt > 1:13222993/1‑35 (MQ=255) aCTTCAACCGCATGATTGAGCAGATCGAAAAAGTg < 1:20521425‑M2/35‑2 (MQ=255) aCTTCAACCGCATGATTGAGCAGATCGAAAAAGTg < 1:20612514‑M2/35‑2 (MQ=255) aCTTCAACCGCATGATTGAGCAGATCGAAAAAGTg > 1:6410432‑M2/1‑34 (MQ=255) cTTCAACCGCATGATTGAGCAGATCGAAAAAGTgg < 1:19016883‑M2/35‑3 (MQ=255) ttCAACCGCATGATTGAGCAGATCGAAAAAGTggc > 1:10616647‑M2/1‑32 (MQ=255) ttCAACCGCATGATTGAGCAGATCGAAAAAGTggc < 1:10278498‑M2/35‑4 (MQ=255) tCAACCGCATGATTGAGCAGATCGAAAAAGTggcg > 1:6572698‑M2/1‑31 (MQ=255) tCAACCGCATGATTGAGCAGATCGAAAAAGTggcg > 1:19985045‑M2/1‑31 (MQ=255) tCAACCGCATGATTGAGCAGATCGAAAAAGTggcg > 1:4239889‑M2/1‑31 (MQ=255) cAACCGCATGATTGAGCAGATCGAAAAAGTggcga < 1:10459502‑M2/35‑6 (MQ=255) cAACCGCATGATTGAGCAGATCGAAAAAGTggcga > 1:13062326‑M2/1‑30 (MQ=255) cAACCGCATGATTGAGCAGATCGAAAAAGTggcga < 1:9537884‑M2/35‑6 (MQ=255) aaCCGCATTATTGAGCAGATCGAAAAAGTggcgaa < 1:13152973‑M2/35‑7 (MQ=255) aaCCGCATGATTGAGCAGATCGAAAAAGTggcgaa < 1:11538492‑M2/35‑7 (MQ=255) aaCCGCATGATTGAGCAGATCGAAAAAGTGGCGAt < 1:19965273/35‑1 (MQ=255) aaCCGCATGATTGAGCAGATCGAAAAAGTGGCGAt > 1:9782417/1‑35 (MQ=255) aCCGCATGATTGAGCAGATCGAAAAAGTggcgaac < 1:12537832‑M2/35‑8 (MQ=255) aCCGCATGATTGAGCAGATCGAAAAAGTggcgaaa < 1:16137520‑M2/35‑8 (MQ=255) aCCGCATGATTGAGCAGATCGAAAAAGTGGCGATc < 1:5107738/35‑1 (MQ=255) aCCGCATGATTGAGCAGATCGAAAAAGTGGCGATc < 1:13648575/35‑1 (MQ=255) ccGCATGATTGAGCAGATCGAAAAAGTGGCGATCa < 1:20471946/35‑1 (MQ=255) ccGCATGATTGAGCAGATCGAAAAAGTGGCGATCa < 1:4617497/35‑1 (MQ=255) ccGCATGATTGAGCAGATCGAAAAAGTGGCGATCa < 1:13250949/35‑1 (MQ=255) ccGCATGATTGAGCAGATCGAAAAAGTGGCGATCa < 1:8603860/35‑1 (MQ=255) ccGCATGATTGAGCAGATCGAAAAAGTGGCGATCa < 1:17977387/35‑1 (MQ=255) cagCATGATTGAGCAGATCGAAAAAGTGGCGATCa < 1:12941040/33‑1 (MQ=255) cGCATGATTGAGCAGATCGAAAAAGTggcgaacaa < 1:7585344‑M2/35‑10 (MQ=255) tcATGATTGAGCAGATCGAAAAAGTGGCGATCaaa < 1:444035/34‑1 (MQ=255) gCATGATTGAGTAGATCGAAAAAGTGGCGATCaaa < 1:7744433/35‑1 (MQ=255) gCATGATTGAGCAGATCGAAAAAGTggcgaacaaa < 1:14658524‑M2/35‑11 (MQ=255) gCATGATTGAGCAGATCGAAAAAGTggcgaacaaa < 1:10020831‑M2/35‑11 (MQ=255) gCATGATTGAGCAGATCGAAAAAGTggcgaaaaaa < 1:5027353‑M2/35‑11 (MQ=255) gCATGATTGAGCAGATCGAAAAAGTggcgaaaaaa < 1:8572953‑M2/35‑11 (MQ=255) gCATGATTGAGCAGATCGAAAAAGTGGCGATCaaa < 1:322744/35‑1 (MQ=255) gCATGATTGAGCAGATCGAAAAAGTGGCGATCaaa < 1:9240099/35‑1 (MQ=255) gCATGATTGAGCAGATCGAAAAAGTGGCGATCaaa < 1:10507100/35‑1 (MQ=255) gCATGATTGAGCAGATCGAAAAAGTGGCGATCaaa < 1:5473793/35‑1 (MQ=255) cATGATTGAGCAGATCGAAAAAGTggcgataaaaa < 1:18850492‑M2/35‑12 (MQ=255) cATGATTGAGCAGATCGAAAAAGTggcgaacaaaa < 1:15339911‑M2/35‑12 (MQ=255) cATGATTGAGCAGATCGAAAAAGTggcgaaaaaaa < 1:13633383‑M2/35‑12 (MQ=255) cATGATTGAGCAGATCGAAAAAGTGGCGATCAAAt < 1:11188587/35‑1 (MQ=255) cATGATTGAGCAGATCGAAAAAGTGGCGATCAAAt < 1:17969231/35‑1 (MQ=255) aTGATTGAGCAGATCGAAAAAGTGGCGATCaaaac > 1:10365133/1‑33 (MQ=255) tGATTTAGCAGATCGAAAAAGTGCCGATCAAATcc < 1:613051/35‑1 (MQ=37) tGATTGAGCAGATCGAAAAAGTggcgaacaaaaac < 1:13906628‑M2/35‑14 (MQ=255) tGATTGAGCAGATCGAAAAAGTggcgaaaaaatac < 1:17610558‑M2/35‑14 (MQ=255) tGATTGAGCAGATCGAAAAAGTGGCGATCAAATcc < 1:8046750/35‑1 (MQ=255) tGATTGAGCAGATCGAAAAAGTGGCGATCAAATcc < 1:12174255/35‑1 (MQ=255) tGATTGAGCAGATCGAAAAAGTGGCGATCAAATcc < 1:15735887/35‑1 (MQ=255) gATTGAGCAGATCGAAAAAGTggcgaaaaaaaccc < 1:11442122‑M2/35‑15 (MQ=255) gATTGAGCAGATCGAAAAAGTGGCGATCAAATccc < 1:19508113/35‑1 (MQ=255) gATTGAGCAGATCGAAAAAGTGGCGATCAAATccc < 1:5959109/35‑1 (MQ=255) aTTGAGCAGATCGAAAAAGTggcgaacaaaaaccc < 1:2894254‑M2/35‑16 (MQ=255) aTTGAGCAGATCGAAAAAGTGGCGATCAAATCCcg < 1:2470475/35‑1 (MQ=255) aTTGAGCAGATCGAAAAAGTGGCGATCAAAACCcg > 1:13691560/1‑35 (MQ=255) aTTGAGCAGATCGAAAAAGTGGCGAATAAATcccc > 1:8505490/1‑34 (MQ=25) ttGAGCAGATCGAAAAAGTggcgaaaaaacaccgc < 1:8406154‑M2/35‑17 (MQ=255) ttGAGCAGATCGAAAAAGTGGCGATCAAATCCcgc < 1:5463601/35‑1 (MQ=255) ttGAGCAGATCGAAAAAGTGGCGATCAAATCCcgc < 1:18393756/35‑1 (MQ=255) ttGAGCAGATCGAAAAAGTGGCGAAAAAAAccccc > 1:4877992/1‑33 (MQ=18) tGAGCAGATCGAAAAAGTggcgaacaaaaaccgcg < 1:5325702‑M2/35‑18 (MQ=255) tGAGCAGATCGAAAAAGTggcgaaaaaaaaccccc < 1:5680333‑M2/35‑18 (MQ=255) tGAGCAGATCGAAAAAGTggcgaaaaaaaaccacg < 1:11552360‑M2/35‑18 (MQ=255) tGAGCAGATCGAAAAAGTGGCGATCAAATCCcgcg < 1:1312202/35‑1 (MQ=255) tGAGCAGATCGAAAAAGTGGCGAACAAAAcccccc > 1:14446881/1‑32 (MQ=21) gAGCAGATCGAAAAAGTGGCGATCAAATCCcgcgc < 1:1483246/35‑1 (MQ=255) gAGCAGATCGAAAAAGTGGCGATCAAATCCcgcgc < 1:7215616/35‑1 (MQ=255) gAGCAGATCGAAAAAGTGGCGATCAAATCCcgcgc < 1:10934432/35‑1 (MQ=255) gAGCAGATCGAAAAAGTGGCGATCAAATCCcgcgc < 1:19689354/35‑1 (MQ=255) gAGCAGATCGAAAAAGTGGCGATCAAATACcgcgc < 1:198911/35‑1 (MQ=255) aGCAGATCGAAAAAGTTGCGATCAAATCCcgcgcg > 1:674058/1‑35 (MQ=255) aGCAGATCGAAAAAGTCGCGATCAAATCCcgcgcg > 1:11926467/1‑35 (MQ=255) cAGATCGAAAAAGTGGCGATCAAATCCCGCGCGcc < 1:4403599/35‑1 (MQ=255) cAGATCGAAAAAGTGGCGATCAAATCCCGCGCGcc < 1:18221999/35‑1 (MQ=255) cAGATCGAAAAAGTGGCGATCAAATCCCGCGCGcc < 1:2730307/35‑1 (MQ=255) cAGATCGAAAAAGTGGCGAAAAAAACCCCCGCGcc > 1:8604712/1‑35 (MQ=12) aTCGAAAAAGTGGCGATCAAATCCCGCGCGCCGAt < 1:16584710/35‑1 (MQ=255) aTCGAAAAAGTGGCGATCAAATCCCGCGCGCCGAt < 1:19751885/35‑1 (MQ=255) tCGAAAAAGTGGCGATCAAATCCCGCGCGCCGAtt < 1:16854146/35‑1 (MQ=255) tCGAAAAAGTGGCGAAAAAAACCCCCCCGCCggct > 1:12484237/1‑32 (MQ=2) cGAAAAAGTGGCGATCAAATCCCGCGCGCCGATTc < 1:3548270/35‑1 (MQ=255) gAAAAAGTGGCGATCAAATCCCGCGCGCCGATTCt < 1:13708534/35‑1 (MQ=255) aaaaaGTGGCGATCAAATCCCGCGCGCCGATTCTg < 1:13490985/35‑1 (MQ=255) aaaaGTGGCGATCAAATCCCGCGCGCCGATTCTGc < 1:19134479/35‑1 (MQ=255) aaaaGTGGCGATCAAATCCCGCGCGCCGATTCTGc < 1:5263256/35‑1 (MQ=255) aaaaGTGGCGATCAAATCCCGCGCGCCGATTCTGc < 1:13126493/35‑1 (MQ=255) aaaGTGGCGATCAAATCCCGCGCGCCGATTCTGCt < 1:5927685/35‑1 (MQ=255) aaaGTGGCGATCAAATCCCGCGCGCCGATTCTGCt < 1:5804363/35‑1 (MQ=255) aaGTGGCGATCAAATCCCGCGCGCCGATTCTGCtt < 1:10752597/35‑1 (MQ=255) aaGTGGCGATCAAATCCCGCGCGCCGATTCTGCtt < 1:10548439/35‑1 (MQ=255) aaGTGGCGATCAAAGCCCGCGCGCCGATTATGCtt < 1:19749524/35‑1 (MQ=37) aGTGGCGATCAAATCCCGCGCGCCGATTCTGCTTa < 1:1251309/35‑1 (MQ=255) aGTGGCGATCAAATCCCGCGCGCCGATTCTGCTTa < 1:10957207/35‑1 (MQ=255) aGTGGCGATCAAATCCCGCGCGCCGATTCTGCTTa < 1:6274752/35‑1 (MQ=255) aGTGGCGATCAAATCCCGCGCGCCGATTCTGCTTa < 1:4906998/35‑1 (MQ=255) tGGCGATCAAATCCCGCGCGCCGATTCTGCTTAAc < 1:4948211/35‑1 (MQ=255) tGGCGATCAAATCCCGCGCGCCGATTCTGCTTAAc < 1:16422734/35‑1 (MQ=255) tGGCGATCAAATCCCGCGCGCCGATTCTGCTTAAc < 1:20055145/35‑1 (MQ=255) | CACTTCAACCGCATGATTGAGCAGATCGAAAAAGTGGCGATCAAATCCCGCGCGCCGATTCTGCTTAAC > REL606/3487441‑3487509 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |