New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2327674 = | 62 (0.600) | 14 (0.160) | 5/42 | NT | 15.8% | coding (383/462 nt) | elaA | predicted acyltransferase with acyl‑CoA N‑acyltransferase domain |
? | REL606 | = 4527187 | 95 (1.060) | coding (1178/2637 nt) | fimD | outer membrane usher protein, type 1 fimbrial synthesis |
Only 100 of 147 total aligned reads displayed.
ATCTTCTTCATAGACCTCCGTCACAGGGATAAAACCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCTG > REL606/2327640‑2327708 | aataccgtagtggaaatgcgcagcaggaaaaaccc < 1:13751292‑M1/1‑1 (MQ=255) aataccgtagtggaaatgcgcagcaggaaaaaccc > 1:5850350‑M1/35‑35 (MQ=255) aTCTTCTTCATAGACCTCCGTCACAGGGATAAAAc > 1:10321175/1‑35 (MQ=255) aTCTTCTTCATAGACCTCCGTCACAGGGATAAAAc < 1:4316248/35‑1 (MQ=255) aTCTTCTTCATAGACCTCCGTCACAGGGATAAAAc > 1:6387239/1‑35 (MQ=255) tcttctTCATAGACCTCCGTCACAGGGATAAAAcc < 1:4456206/35‑1 (MQ=255) tcttctTCATAGACCTCCGTCACAGGGATAAAAcc < 1:16235570/35‑1 (MQ=255) tcttctTCATAGACCTCCGTCACAGGGATAAAAcc > 1:11784129/1‑35 (MQ=255) ataccgtagtggaaatgcgcagcaggaaaaacccc > 1:16917039‑M1/34‑35 (MQ=255) ataccgtagtggaaatgcgcagcaggaaaaacccc < 1:18878891‑M1/2‑1 (MQ=255) ataccgtagtggaaatgcgcagcaggaaaaacccc > 1:18516651‑M1/34‑35 (MQ=255) ataccgtagtggaaatgcgcagcaggaaaaacccc > 1:11914876‑M1/34‑35 (MQ=255) ataccgtagtggaaatgcgcagcaggaaaaacccc < 1:12188887‑M1/2‑1 (MQ=255) taccgtagtggaaatgcgcagcaggaaaaaccCCg > 1:1553653‑M1/33‑35 (MQ=255) taccgtagtggaaatgcgcagcaggaaaaaccCCg > 1:2371257‑M1/33‑35 (MQ=255) taccgtagtggaaatgcgcagcaggaaaaaccCCg > 1:2722963‑M1/33‑35 (MQ=255) cttcttCATAGACCTCCGTCACAGGGATAAAACCg > 1:13043368/1‑35 (MQ=255) cttcttCATAGACCTCCGTCACAGGGATAAAACCg < 1:8245933/35‑1 (MQ=255) cttcttCATAGACCTCCGTCACAGGGATAAAACCg > 1:3263006/1‑35 (MQ=255) tcttcATAGCCCTCCGTCACAGGGATAAAACCGaa < 1:12698691/35‑1 (MQ=255) tcttcATAGACCTCCGTCACAGGGATAAAACCGaa < 1:17879747/35‑1 (MQ=255) tcttcATAGACCTCCGTCACAGGGATAAAACCGaa < 1:11655918/35‑1 (MQ=255) tcttcATAGACCTCCGTCACAGGGATAAAACCGaa > 1:8734650/1‑35 (MQ=255) tcttcATAGACCTCCGTCACAGGGATAAAACCGaa < 1:10699603/35‑1 (MQ=255) cttcATAGACCTCCGTCACAGGGATAAAACCGaac > 1:2076535/1‑34 (MQ=255) tcATAGACCTCCGTCACAGGGATAAAACCGAAAct > 1:20455465/1‑35 (MQ=255) tcATAGACCTCCGTCACAGGGATAAAACCGAAAct > 1:18454812/1‑35 (MQ=255) tcATAGACCTCCGTCACAGGGATAAAACCGAAAct > 1:12263397/1‑35 (MQ=255) tcATAGACCTCCGTCACAGGGATAAAACCGAAAct > 1:2626174/1‑35 (MQ=255) tcATAGACCTCCGTCACAGGGATAAAACCGAAAct > 1:16529146/1‑35 (MQ=255) cATAGACCTCCGTCACAGGGATAAAACCGAAActc > 1:7983415/1‑35 (MQ=255) cATAGACCTCCGTCACAGGGATAAAACCGAAActc > 1:8188196/1‑35 (MQ=255) aTAGACCTCCGTCACAGGGATAAAACCGAAActct > 1:1419370/1‑35 (MQ=255) aTAGACCTCCGTCACAGGGATAAAACCGAAActct > 1:5011654/1‑35 (MQ=255) aTAGACCTCCGTCACAGGGATAAAACCGAAActct > 1:2401265/1‑35 (MQ=255) aGACCTCCGTCACAGGGATAAAACCGAAACTCTgg > 1:4450745/1‑35 (MQ=255) aGACCTCCGTCACAGGGATAAAACCGAAACTCTgg > 1:14997654/1‑35 (MQ=255) gACCTCCGTCACAGGGATAAAACCGAAACTCTGGt > 1:16514233/1‑35 (MQ=255) gACCTCCGTCACAGGGATAAAACCGAAACTCTGGt > 1:1576199/1‑35 (MQ=255) aCCTCCGTCACAGGGATAAAACCGAAACTCTGGTa > 1:10561717/1‑35 (MQ=255) ccTCCGTCACAGGGATAAAACCGAAACTCTGGTAg > 1:6098410/1‑35 (MQ=255) ccTCCGTCACAGGGATAAAACCGAAACTCTGGTAg > 1:19667293/1‑35 (MQ=255) ccccGCCAAAGGAAAAAACCCGAAACTCTGGTAGa < 1:5500654/33‑1 (MQ=9) cTCCGTCACAGGTATAAAACCGAAACTCTGGTAGa > 1:15743131/1‑35 (MQ=255) ccGTCACAGGGATAAAACCGAAACTCTGGTAGAAg > 1:6640579/1‑35 (MQ=255) cGTCACAGGGATAAAACCGAAACTCTGGTAGAAGt > 1:9310375/1‑35 (MQ=255) cGTCACAGGGATAAAACCGAAACTCTGGTAGAAGt > 1:1360435/1‑35 (MQ=255) cGTCACAGGAAAAACCCCGAAACTCTGGTAGAAGt < 1:17155164/35‑1 (MQ=16) gTCACAGGGATAAAACCGAAACTCTGGTAGAAGtt > 1:6333880/1‑35 (MQ=255) tCACAGGGATAAAACCGAAACTCTGGTAGAAGttt > 1:3835949/1‑35 (MQ=255) cacaGGGATAAAACCGAAACTCTGGTAGAAGtttt > 1:2146782/1‑35 (MQ=255) caaaGGGAAAAACCCGAAACTCTGGTAGAAGtttt < 1:4744572/32‑1 (MQ=25) aagaggaaaaaccCCGAAACTCTGGTAGAAGtttt > 1:701299‑M1/14‑35 (MQ=255) acaGGGATAAAACCGAAACTCTGGTAGAAGTTTTg > 1:9856061/1‑35 (MQ=255) acaGGGATAAAACCGAAACTCTGGTAGAAGTTTTg > 1:1335135/1‑35 (MQ=255) aaaggaaaaaccCCGAAACTCTGGTAGAAGTTTTg > 1:7767723‑M1/13‑35 (MQ=255) caggaaaaaacCCGAAACTCTGGTAGAAGTTTTGc > 1:8179828‑M1/12‑35 (MQ=255) cagaaaaaaccCCGAAACTCTGGTAGAAGTTTTGc > 1:15619384‑M1/12‑35 (MQ=255) caGGGATAAAACCGAAACTCTGGTAGAAGTTTTGc > 1:1320732/1‑35 (MQ=255) caGGGATAAAACCGAAACTCTGGTAGAAGTTTTGc > 1:11030223/1‑35 (MQ=255) caGGGATAAAACCGAAACTCTGGTAGAAGTTTTGc > 1:1612772/1‑35 (MQ=255) caGGGAAAAACCCGAAACTCTGGTAGAAGTTTTGc < 1:20190550/35‑1 (MQ=37) aggaaaaaccCCGAAACTCTGGTAGAAGTTTTGCa > 1:3853235‑M1/11‑35 (MQ=255) aGGGATAAAACCGAAACTCTGGTAGAAGTTTTGCa > 1:10392613/1‑35 (MQ=255) aGGGATAAAACCGAAACTCTGGTAGAAGTTTTGCa > 1:5200122/1‑35 (MQ=255) aGGGATAAAACCGAAACTCTGGTAGAAGTTTTGCa > 1:18829788/1‑35 (MQ=255) gggATAAAACCGAAACTCTGGTAGAAGTTTTGCAg > 1:10809877/1‑35 (MQ=255) ggATAAAACCGAAACTCTGGTAGAAGTTTTGCAGa > 1:4590059/1‑35 (MQ=255) gaaaaaccCCGAAACTCTGGTAGAAGTTTTGCAGa > 1:9573883‑M1/9‑35 (MQ=255) gaaaaaccCCGAAACTCTGGTAGAAGTTTTGCAGa > 1:12030833‑M1/9‑35 (MQ=255) gATAAAACCGAAACTCTGGTAGAAGTTTTGCAGAt > 1:15904146/1‑35 (MQ=255) gATAAAACCGAAACTCTGGTAGAAGTTTTGCAGAt > 1:19948244/1‑35 (MQ=255) caaaaccCCGAAACTCTGGTAGAAGTTTTGCAGAt > 1:796299‑M1/8‑35 (MQ=255) aaaaaccCCGAAACTCTGGTAGAAGTTTTGCAGAt > 1:736841‑M1/8‑35 (MQ=255) aaaaaacCCGAAACTCTGGTAGAAGTTTTGCAGAt > 1:1296029‑M1/8‑35 (MQ=255) aaaaccCCGAAACTCTGGTAGAAGTTTTGCAGATg > 1:3597997‑M1/7‑35 (MQ=255) aTAAACCAGAAACTCTGGTAGAAGTTTTGCAGAtg < 1:3086201/35‑1 (MQ=37) aTAAAACCGAAACTCTGGTAGAAGTTTTGCAGAtg > 1:20353373/1‑35 (MQ=255) taaccCCGAAACTCTGGTAGAAGTTTTGCAGATgc > 1:9272248‑M1/6‑35 (MQ=255) tAAAACCGAAACTCTTGTAGAAGTTTTGCAGAtgc > 1:1093332/1‑35 (MQ=255) aacccCCGAAACTCTGGTAGAAGTTTTGCAGATgc > 1:8733668‑M1/6‑35 (MQ=255) aaaccCCGAAACTCTGGTAGAAGTTTTGCAGATgc > 1:8373654‑M1/6‑35 (MQ=255) aaaccCCGAAACTCTGGTAGAAGTTTTGCAGATgc > 1:17593421‑M1/6‑35 (MQ=255) aaaccCCGAAACTCTGGTAGAAGTTTTGCAGATgc > 1:20023753‑M1/6‑35 (MQ=255) aaccCCGAAACTCTGGTAGAAGTTTTGCAGATgcg > 1:5190630‑M1/5‑35 (MQ=255) aaccCCGAAACTCTGGTAGAAGTTTTGCAGATgcg > 1:8451656‑M1/5‑35 (MQ=255) aaacCCGAAACTCTGGTAGAAGTTTTGCAGATgcg > 1:20225992‑M1/5‑35 (MQ=255) aaaaCCGAAACTCTGGTAGAAGTTTTGCAGAtgcg > 1:9574340/1‑35 (MQ=255) aaaaCCGAAACTCTGGTAGAAGTTTTGCAGAtgcg > 1:9774487/1‑35 (MQ=255) accCCGAAACTCTGGTAGAAGTTTTGCAGATgcgc > 1:4950344‑M1/4‑35 (MQ=255) ccCCGAAACTCTGGTAGAAGTTTTGCAGATGCGcc > 1:15694487‑M1/3‑35 (MQ=255) ccCCGAAACTCTGGTAGAAGTTTTGCAGATGCGcc > 1:1549973‑M1/3‑35 (MQ=255) aaCCGAAACTCTGGTAGAAGTTTTGCAGAtgcgcc > 1:1573689/1‑35 (MQ=255) cCCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCt > 1:16183465‑M1/2‑35 (MQ=255) cCCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCt > 1:17330428‑M1/2‑35 (MQ=255) cCCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCt > 1:18323356‑M1/2‑35 (MQ=255) cCCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCt > 1:3767543‑M1/2‑35 (MQ=255) aCCGAAACTCTGGTAGAAGTTTTGCAGAtgcgcct > 1:10972352/1‑35 (MQ=255) CCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCTg < 1:8290337‑M1/35‑1 (MQ=255) CCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCTg > 1:10182689‑M1/1‑35 (MQ=255) | ATCTTCTTCATAGACCTCCGTCACAGGGATAAAACCGAAACTCTGGTAGAAGTTTTGCAGATGCGCCTG > REL606/2327640‑2327708 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |