New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 842815 | 109 (1.060) | 4 (0.040) | 3/44 | NT | 4.8% | intergenic (‑93/‑260) | ybiF/ompX | threonine and homoserine efflux system/outer membrane protein X |
? | REL606 | 3607355 = | 58 (0.620) | coding (503/2076 nt) | yhjG | predicted outer membrane biogenesis protein |
Only 100 of 183 total aligned reads displayed.
ATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACTAAAATGCGCCAGGATTGATGGAAT > REL606/842781‑842849 | aTGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC > 1:10061141‑M1/1‑35 (MQ=255) aTGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC < 1:686562‑M1/35‑1 (MQ=255) tGCTGGTTGAGCATTTGTTGAAAAAATTTTccccc < 1:15935774/35‑1 (MQ=255) tGCTGGTTGAGCATTTGTTGAAAAAATTTTccccc > 1:1820158/1‑35 (MQ=255) tGCTGGTTGAGCATTTGTTGAAAAAATTTTccccc < 1:4754310/35‑1 (MQ=255) tGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCCa < 1:15556376‑M1/35‑2 (MQ=255) gCTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCg > 1:6043243/1‑35 (MQ=255) cTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGt < 1:18707533/35‑1 (MQ=255) cTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGt > 1:14616921/1‑35 (MQ=255) cTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGt < 1:445929/35‑1 (MQ=255) cTGGTTCAGCATTTGTTGAAAAAATTTTCCCCCGt > 1:4929253/1‑35 (MQ=255) tGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGtt > 1:19076401/1‑35 (MQ=255) tGGTTGAGCATTTGTTGAAAAAATTTTCACCCGtt < 1:4434430/35‑1 (MQ=255) ggTTGAGCATTTGTTGAAAAAATTTTCCCCCGttt > 1:4153680/1‑35 (MQ=255) ggTTGAGCATTTGTTGAAAAAATTTTCCCCCGttt > 1:2875203/1‑35 (MQ=255) ggTTGAGCATTTGTTGAAAAAATTTTCCCCCGttt < 1:18922542/35‑1 (MQ=255) gTTGAGCATTTGTTGAAAAAATTTTCCCCCGtttt < 1:15770814/35‑1 (MQ=255) ttGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTg < 1:13352231/35‑1 (MQ=255) ttGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTg > 1:18586294/1‑35 (MQ=255) tGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGa < 1:14164995/35‑1 (MQ=255) tGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGa > 1:19717392/1‑35 (MQ=255) tGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGa > 1:18113326/1‑35 (MQ=255) tGAGCATTTGTCGAAAAAATTTTCCCCCGTTTTGa > 1:12238676/1‑35 (MQ=255) gAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGAc > 1:15882594/1‑35 (MQ=255) aGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACt < 1:10067899/35‑1 (MQ=255) aGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACt > 1:17176843/1‑35 (MQ=255) aGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACt < 1:11427058/35‑1 (MQ=255) aGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACt > 1:8658883/1‑35 (MQ=255) aGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACt < 1:11848748/35‑1 (MQ=255) aGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACt > 1:8464780/1‑35 (MQ=255) cATTTGTTTAAAAAATTTTCCCCCGTTTTGACTaa > 1:19250188/1‑35 (MQ=255) aTTTGTTGAAAAAATTTTCCCCCGTTTTGACTaaa < 1:14679886/35‑1 (MQ=255) aTTTGTTGAAAAAATTTTCCCCCGTTTTGACTaaa > 1:103345/1‑35 (MQ=255) aTTTGTTGAAAAAATTTTCCCCCGTTTTGACTaaa < 1:6122672/35‑1 (MQ=255) tttGTTGAAAAAATTTTCCCCCGTTTTGACTaaaa < 1:17090537/35‑1 (MQ=255) tttGTTGAAAAAATTTTCCCCCGTTTTGACTaaaa < 1:13275291/35‑1 (MQ=255) tttGTTGAAAAAATTTTCCCCCGTTTTGACTaaaa < 1:5868297/35‑1 (MQ=255) tttGTTGAAAAAATTTTCCCCCGTTTTGACTaaaa > 1:8346396/1‑35 (MQ=255) ttgttgAAAAAATTTTCCCCCGTTTTGACTAAAAt > 1:535375/1‑35 (MQ=255) ttgttgAAAAAATTTTCCCACGTTTTGACTAAAAt < 1:11239144/35‑1 (MQ=255) tgttgAAAAAATTTTCCCCCGTTTTGACTAAAATg > 1:9119722/1‑35 (MQ=255) tgttgAAAAAATTTTCCCCCGTTTTGACTAAAATg < 1:374107/35‑1 (MQ=255) tgttgAAAAAATTTTCCCCCGTTTTGACTAAAATg > 1:15592929/1‑35 (MQ=255) gttgAAAAAATTTTCCCCCGTTTTGACTAAAATgc > 1:2116094/1‑35 (MQ=255) gttgAAAAAATTTTCCCCCGTTTTGACTAAAATgc > 1:11411615/1‑35 (MQ=255) ttgAAAAAATTTTCCCCCGTTTTGACTAAAATgcg > 1:8991741/1‑35 (MQ=255) ttgAAAAAATTTTCCCCCGTTTTGACTAAAATgcg < 1:4845360/35‑1 (MQ=255) tgAAAAAATTTTCCCCCGTTTTGACTAAAATgcgc < 1:6689951/35‑1 (MQ=255) tgAAAAAATTTTCCCCCGTTTTGACTAAAATgcgc > 1:566747/1‑35 (MQ=255) tgAAAAAATTTTCCCCCGTTTTGACTAAAATgcgc < 1:12319258/35‑1 (MQ=255) tgAAAAAATTTTCCCCCGTTTTGACTAAAATgcgc > 1:19477859/1‑35 (MQ=255) tgAAAAAATTTTCCCCCGTTTTGACTAAAATgcgc > 1:14738832/1‑35 (MQ=255) tgAAAAAATTTTCCCCCGTTTTGACTAAAATgcgc < 1:15324133/35‑1 (MQ=255) gAAAAAATTTTCCCGCGTTTTGACTAAAATGCGcc < 1:5623833/35‑1 (MQ=255) gAAAAAATTTTCCCCCGTTTTGACTAAAATGCGcc < 1:18857241/35‑1 (MQ=255) gAAAAAATTTTCCCCCGTTTTGACTAAAATGCGcc > 1:257059/1‑35 (MQ=255) gAAAAAATTTTCCCCCGTTTTGACTAAAATGCGcc > 1:14474966/1‑35 (MQ=255) aaaaaaTTTTCCCCagccgaaacgaccatgccgac < 1:1645952‑M1/35‑22 (MQ=255) aaaaaaTTTTCCCCCGTTTTGACTAAAATgcgcaa > 1:17992441/1‑33 (MQ=255) aaaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCa < 1:16801039/35‑1 (MQ=255) aaaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCa < 1:15285411/35‑1 (MQ=255) aaaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCa > 1:17403802/1‑35 (MQ=255) aaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCAg < 1:4530754/35‑1 (MQ=255) aaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCAg < 1:8271522/35‑1 (MQ=255) aaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCAg < 1:6297936/35‑1 (MQ=255) aaaaaTTTTCCCCCGTTTTGACTAAAATGCGCCAg > 1:17662845/1‑35 (MQ=255) aaaaaTTTTCCCCCGTTTTCACTAAAATGCGCCAg > 1:15724371/1‑35 (MQ=255) aaaaTTTTCCCCCGTTTTGACTAAAATGCGCCAgg > 1:3399657/1‑35 (MQ=255) aaaaTTTTCCCCCGTTTTGACTAAAATGCGCCAgg < 1:7868414/35‑1 (MQ=255) aaaaTTTTCCCCAGTTTTGACTAAAATGCGCCAgg < 1:13415148/35‑1 (MQ=255) aaTTTTCCCCCGTTTTGACTAAAATGCGCCAGGAt < 1:7162563/35‑1 (MQ=255) aaTTTTCCCCCGTTTTGACTAAAATGCGCCAGGAt > 1:14586399/1‑35 (MQ=255) ttttCCCCCGTTTTGAGTAAAATGCGCCAGGATTg < 1:8703803/35‑1 (MQ=255) ttttCCCCCGTTTTGACTAAAATGCGCCAGGATTg < 1:7460254/35‑1 (MQ=255) ttttCCCCCGTTTTGACTAAAATGCGCCAGGATTg > 1:9817367/1‑35 (MQ=255) ttttCCCCCGTTTTGACTAAAATGCGCCAGGATTg > 1:20567267/1‑35 (MQ=255) tttCCCCCGTTTTGACTAAAATGCGCCAGGATTGa > 1:18216705/1‑35 (MQ=255) tttCCCCCGTTTTGACTAAAATGCGCCAGGATTGa > 1:2626875/1‑35 (MQ=255) tttCCCCCGTTTTGACTAAAATGCGCCAGGATTGa > 1:4200218/1‑35 (MQ=255) tCCCCagccgaaacgaccatgccgacggctttgca < 1:3195943‑M1/35‑31 (MQ=255) tCCCCCGTTTTGACTAAAATGCGCCAGGATTGATg < 1:7409197/35‑1 (MQ=255) cccccGTTTTGACTAAAATGCGCCAGGATTGATgg > 1:4300787/1‑35 (MQ=255) cccccGTTTTGACTAAAATGCGCCAGGATTGATgg < 1:19305988/35‑1 (MQ=255) ccccagccgaaacgaccatgccgacggctttgcat < 1:6014140‑M1/35‑32 (MQ=255) ccccagccgaaacgaccatgccgacggctttgcat < 1:3606323‑M1/35‑32 (MQ=255) cccacGTTTTGACTAAAATGCGCCAGGATTGATgg < 1:18676435/35‑1 (MQ=255) ccccGTTTTGACTAAAATGCGCCAGGATTGATGGa < 1:5398406/35‑1 (MQ=255) ccccGTTTTGACTAAAATGCGCCAGGATTGATGGa > 1:9373677/1‑35 (MQ=255) cccGTTTTGACTAAAATGCGCCAGGATTGATGGaa > 1:3312349/1‑35 (MQ=255) cccGTTTTGACTAAAATGCGCCAGGATTGATGGaa < 1:12887011/35‑1 (MQ=255) cccGTTTTGACTAAAATGCGCCAGGATTGATGGaa < 1:19468075/35‑1 (MQ=255) ccagccgaaacgaccatgccgacggctttgcattc < 1:15140136‑M1/35‑34 (MQ=255) ccagccgaaacgaccatgccgacggctttgcattc > 1:12172021‑M1/1‑2 (MQ=255) ccacccgaaacgaccatgccgacggctttgcattc < 1:4286379‑M1/35‑34 (MQ=255) ccGTTTTGACTAAAATGCGCCAGGATTGATGGAAt < 1:15420116/35‑1 (MQ=255) ccGTTTTGACTAAAATGCGCCAGGATTGATGGAAt < 1:18295130/35‑1 (MQ=255) ccGTTTTGACTAAAATGCGCCAGGATTGATGGAAt > 1:20061701/1‑35 (MQ=255) cagccgaaacgaccatgccgacggctttgcattcg > 1:10730477‑M1/1‑1 (MQ=255) cagccgaaacgaccatgccgacggctttgcattcg < 1:16149704‑M1/35‑35 (MQ=255) cagccgaaacgaccatgccgacggctttgcattcg > 1:16024010‑M1/1‑1 (MQ=255) | ATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCCCGTTTTGACTAAAATGCGCCAGGATTGATGGAAT > REL606/842781‑842849 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |