New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 294204 =76 (0.740)6 (0.070) 3/38 NT 10.8% intergenic (+474/‑53) ykgD/ykgE predicted DNA‑binding transcriptional regulator/predicted oxidoreductase
?REL606 = 2574914 39 (0.480)intergenic (+756/+62) sseA/sseB 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate

Only 100 of 206 total aligned reads displayed.

AAAGAACGCCATATTAATTGATGATTGATCCCCCGGTGGGGGGGAAACATCGGGCATAAATGGGCATGA  >  REL606/294170‑294238
                                  |                                  
ccacctttgctaactttgtccgcggcattggttCg                                    <  1:13323533‑M1/2‑1 (MQ=255)
ccacctttgctaactttgtccgcggcattggttCg                                    >  1:12731800‑M1/34‑35 (MQ=255)
ataataaccggagtctctccggcgacaatttactg                                    <  1:16887462‑M1/1‑1 (MQ=255)
ataataaccggagtctctccggcgacaatttactg                                    >  1:9205534‑M1/35‑35 (MQ=255)
aaaGAACGCCATATTAATTGATGATTGATCCCCCg                                    <  1:14112681/35‑1 (MQ=255)
aaaGAACGCCATATTAATTGATGATTGATCCCCCg                                    <  1:14881420/35‑1 (MQ=255)
 taataaccggagtctctccggcgacaatttactgg                                   <  1:5248395‑M1/2‑1 (MQ=255)
 cacctttgctaactttgtccgcggcattggttCgg                                   >  1:14176664‑M1/33‑35 (MQ=255)
 cacctttgctaactttgtccgcggcattggttCgg                                   >  1:7679221‑M1/33‑35 (MQ=255)
 cacctttgctaactttgtccgcggcattggttCgg                                   <  1:2241043‑M1/3‑1 (MQ=255)
 cacctttgctaactttgtccgcggcattggttCgg                                   >  1:2903152‑M1/33‑35 (MQ=255)
 cacctttgctaactttgtccgcggcattggttCgg                                   >  1:2693049‑M1/33‑35 (MQ=255)
 atctaaccggagtctctccggcgacaatttactgg                                   >  1:10838360‑M1/34‑35 (MQ=255)
 aaGAACGCCATATTAATTGATGATTGATCCCCCgg                                   >  1:19144387/1‑35 (MQ=255)
 aaGAACGCCATATTAATTGATGATTGATCCCCCgg                                   >  1:12912699/1‑35 (MQ=255)
  acctttgctaactttgtccgcggcattggttCGGt                                  <  1:11247831‑M1/4‑1 (MQ=255)
  acctttgctaactttgtccgcggcattggttCGGt                                  <  1:16334344‑M1/4‑1 (MQ=255)
  acctttgctaactttgtccgcggcattggttCGGt                                  >  1:16588386‑M1/32‑35 (MQ=255)
  aataaccggagtctctccggcgacaatttactggt                                  <  1:4752067‑M1/3‑1 (MQ=255)
  aataaccggagtctctccggcgacaatttactggt                                  <  1:14252286‑M1/3‑1 (MQ=255)
  aGAACGCCATATTAATTGATGATTGATCCCCCGGt                                  >  1:17922348/1‑35 (MQ=255)
   gAACGCCATATTAATTGATGATTGATCCCCCGGTg                                 >  1:5298790/1‑35 (MQ=255)
   cctttgctaactttgtccgcggcattggttCGGTg                                 >  1:11707909‑M1/31‑35 (MQ=255)
   cctttgctaactttgtccgcggcattggttCGGTg                                 >  1:15689662‑M1/31‑35 (MQ=255)
   cctttgctaactttgtccgcggcattggttCGGTg                                 >  1:18243061‑M1/31‑35 (MQ=255)
   ataaccggagtctctccggcgacaatttactggtg                                 >  1:3449838‑M1/32‑35 (MQ=255)
    ctttgctaactttgtccgcggcattggttCGGTgg                                <  1:9129269‑M1/6‑1 (MQ=255)
    ctttgctaactttgtccgcggcattggttCGGTgg                                <  1:16255440‑M1/6‑1 (MQ=255)
    ctttgctaactttgtccgcggcattggttCGGTgg                                >  1:8767018‑M1/30‑35 (MQ=255)
    ctttgctaactttgtccgcggcattggttCGGTgg                                >  1:13491285‑M1/30‑35 (MQ=255)
    ctttgctaactttgtccgcggcattggttCGGTgg                                >  1:2491644‑M1/30‑35 (MQ=255)
    aaCGCCATATTAATTGATGATTGATCCCCCGGTgg                                <  1:11781975/35‑1 (MQ=255)
     tttgctaactttgtccgcggcattggttCGGTggg                               <  1:13817666‑M1/7‑1 (MQ=255)
     tttgctaactttgtccgcggcattggttCGGTggg                               <  1:17265318‑M1/7‑1 (MQ=255)
     tttgctaactttgtccgcggcattggttCGGGggg                               <  1:8393756‑M1/7‑1 (MQ=255)
     aaccggagtctctccggcgacaatttactGGTggg                               <  1:15218677‑M1/6‑1 (MQ=255)
     aCGCCATATTAATTGATGATTGATCCCCCGGTggg                               <  1:6501346/35‑1 (MQ=255)
     aCGCCATATTAATTGATGATTGATCCCCCGGTggg                               <  1:8148488/35‑1 (MQ=255)
      ttgctaactttgtccgcggcattggttCGGTgggg                              <  1:19400643‑M1/8‑1 (MQ=255)
      cGCCATATTAATTGATGATTGATCCCCCGGTgggg                              >  1:6005637/1‑35 (MQ=255)
      accggagtctctccggcgacaatttactGGTgggg                              <  1:12226152‑M1/7‑1 (MQ=255)
       tgctaactttgtccgcggcattggttCGGTggggg                             <  1:844556‑M1/9‑1 (MQ=255)
       gCCATATTAATTGATGATTGATCCCCCGGTggggg                             >  1:2396582/1‑35 (MQ=255)
       ccggagtctctccggcgacaatttactGGTggggg                             <  1:652926‑M1/8‑1 (MQ=255)
        ccATATTAATTGATGATTGATCCCCCGGTgggggg                            >  1:4864808/1‑35 (MQ=255)
         ggagtctctccggcgacaatttactGGtgggggga                           <  1:16044502‑M1/10‑2 (MQ=255)
         ctaactttgtccgcggcattggttCGGtggggggt                           <  1:11470925‑M1/11‑2 (MQ=255)
         cATATTAATTGATGATTGATCCCCCGGTggggggg                           >  1:12019805/1‑35 (MQ=255)
         cATATTAATTGATGATTGATCCCCCGGTggggggg                           >  1:20047440/1‑35 (MQ=255)
         cATATTAATTGATGATTGATCCCCCGGTggggggg                           >  1:9188637/1‑35 (MQ=255)
          taactttgtccgcggcattggttCGgtggggggaa                          <  1:8068942‑M1/12‑3 (MQ=255)
          taactttgtccgcggcattggttCGGTGGGGGGGa                          <  1:796267‑M1/12‑1 (MQ=255)
          gagtctctccggcgacaatttactggtgggggaga                          <  1:9563628‑M1/11‑4 (MQ=255)
          atatTAATTGATGATTGATCCCCCGGTGGGTGGGa                          >  1:18726621/1‑35 (MQ=255)
          atatTAATTGATGATTGATCCCCCGGTGGGGGGGa                          <  1:2562852/35‑1 (MQ=255)
          atatTAATTGATGATTGATCCCCCGGTGGGGGGGa                          >  1:2670655/1‑35 (MQ=255)
           ngtctctccggcgacaatttactggtggggggaga                         <  1:10611803‑M1/12‑4 (MQ=255)
           aactttgtccgcggcattggttCggtggggggcaa                         <  1:18876735‑M1/13‑4 (MQ=255)
           aactttgtccgcggcattggttCGGTGGGGGGGaa                         <  1:6133603‑M1/13‑1 (MQ=255)
           aactttgtccgcggcattggttCGGTGGGGGGGaa                         <  1:11009195‑M1/13‑1 (MQ=255)
            atTAATTGATGATTGATCCCCCGGTGGGGGGGaaa                        >  1:20176347/1‑35 (MQ=255)
            actttgtccgcggcattggttCGGTGGGGGGgaat                        <  1:3143252‑M1/14‑2 (MQ=255)
             ttAATTGATGATTGATCCCCCGGTGGGGGGGAAAc                       >  1:4156973/1‑35 (MQ=255)
             tctctccggcgacaatttactGGTGGGGGGcaaaa                       <  1:9226844‑M1/14‑2 (MQ=255)
              tAATTGATGATTGATCCCCCGGTGGGGGGGAAACa                      >  1:14051302/1‑35 (MQ=255)
              tAATTGATGATTGATCCCCCGGTGGGGGGGAAACa                      <  1:5487192/35‑1 (MQ=255)
              ctctccggcgacaatttactGGTGGGGGGGAAACa                      <  1:2815950‑M1/15‑1 (MQ=255)
                aTTGATGATTGATCCCCCGGTGGGGGGGAAACATc                    >  1:12345295/1‑35 (MQ=255)
                aTTGATGATTGATCCCCCGGTGGGGGGGAAACATc                    <  1:6782841/35‑1 (MQ=255)
                aTTGATGATTGATCCCCCGGTGGGGGGGAAACATc                    >  1:14271099/1‑35 (MQ=255)
                 ttGATGATTGATCCCCCGGTGGGGGGGAAACATCg                   >  1:16545857/1‑35 (MQ=255)
                 ttGATGATTGATCCCCCGGTGGGGGGGAAACATCg                   <  1:12579987/35‑1 (MQ=255)
                 ttGATGATTGATCCCCCGGTGGGGGGGAAACATCg                   >  1:13569046/1‑35 (MQ=255)
                 ttGATGATTGATCCCCCGGTGGGGGGGAAACATCg                   <  1:5218778/35‑1 (MQ=255)
                 ttGATGATTGATCCCCCGGTGGGGGGGAAACATCg                   >  1:6587349/1‑35 (MQ=255)
                 ttGATGATTGATCCCACGGTGGGGGGGAAACATCg                   <  1:12081910/35‑1 (MQ=255)
                   gatgatTGATCCCCCGGTGGGGGGGAAACATCggg                 <  1:210399/35‑1 (MQ=255)
                    atgatTGACCCCCCGGTGGGGGGGAAACATCGGGc                <  1:6709901/35‑1 (MQ=255)
                     tgattgatCCCCCGGTGGGGGGGAAACATCGGGCa               >  1:14605882/1‑35 (MQ=255)
                      gattgatCCCCCGGTGGGGGGGAAACATCGGGCAt              >  1:15835455/1‑35 (MQ=255)
                      gattgatCCCCCGGTGGGGGGGAAACATCGGGCAt              <  1:6909270/35‑1 (MQ=255)
                       attgatCCCCCGGTGGGGGGGAAACATCGGGCATa             <  1:3561422/35‑1 (MQ=255)
                       attgatCCCCCCGTGGGGGGGAAACATCGGGCATa             >  1:5387416/1‑35 (MQ=255)
                        ttgatCCCCCGGTGGGGGGGAAACATCGGGCATaa            >  1:9173329/1‑35 (MQ=255)
                         tgatCCCCCGGTGGGGGGGAAACATCGGGCATaaa           >  1:4278782/1‑35 (MQ=255)
                          gatCCCCCGGTGGGGTGGAAACATCGGGCATAAAt          >  1:17061227/1‑35 (MQ=255)
                            tCCCCCGGTGGTGGGGAAACATCGGGCATAAATgg        >  1:7135123/1‑35 (MQ=255)
                            tCCCCCGGTGGGGGGGAAACATCGGGCATAAATgg        <  1:17715432/35‑1 (MQ=255)
                             cccccGGTGGGGGGGAAACATCGGGCATAAATggg       >  1:18644054/1‑35 (MQ=255)
                              ccccGGTGGGGGGGAAACATCGGGCATAAATGGGc      >  1:12255196/1‑35 (MQ=255)
                               cccGGTGGGGGGGAAACATCGGGCATAAATGGGCa     >  1:4633642/1‑35 (MQ=255)
                                ccGGTGGGGTGGAAACATCGGGCATAAATGGGCAt    <  1:19358130/35‑1 (MQ=255)
                                 CGGTGGGGGGGAAACATCGGGCATAAATGGGCATg   <  1:13957612‑M1/35‑1 (MQ=255)
                                 CGGTGGGGGGGAAACATCGGGCATAAATGGGCATg   <  1:11533299‑M1/35‑1 (MQ=255)
                                  GGTGGGGGGGAAACATCGGGCATAAATGGGCATGa  >  1:7555802‑M1/1‑35 (MQ=255)
                                  GGTGGGGGGGAAACATCGGGCATAAATGGGCATGa  <  1:2539451‑M1/35‑1 (MQ=255)
                                  GGTGGGGGGGAAACATCGGGCATAAATGGGCATGa  >  1:1697024‑M1/1‑35 (MQ=255)
                                  GGTGGGGGGGAAACATCGGGCATAAATGGGCATGa  >  1:1370730‑M1/1‑35 (MQ=255)
                                  GGTGGGGGGGAAACATCGGGCATAAATGGGCATGa  <  1:12100844‑M1/35‑1 (MQ=255)
                                  GGTGGGGGGGAAACATCGGGCATAAATGGGCATGa  >  1:10117112‑M1/1‑35 (MQ=255)
                                  |                                  
AAAGAACGCCATATTAATTGATGATTGATCCCCCGGTGGGGGGGAAACATCGGGCATAAATGGGCATGA  >  REL606/294170‑294238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.