New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 47390487 (0.850)42 (0.540) 6/36 NT 41.1% coding (1402/1677 nt) ybaL predicted transporter with NAD(P)‑binding Rossmann‑fold domain
?REL606 = 1923465 55 (0.710)coding (662/1011 nt) ruvB Holliday junction DNA helicase B

Only 100 of 210 total aligned reads displayed.

AGATGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGC  >  REL606/473870‑473938
                                    |                                  
aGATGCGCCAGTTTCATAATTTCTTCGTTCGC‑‑CGC                                    >  1:8126251‑M1/1‑35 (MQ=255)
 gaggcgccagTTGCATAATTTCTTCGTTCGC‑‑CGCg                                   <  1:19884018‑M1/32‑2 (MQ=255)
 gATGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCg                                   <  1:14577769‑M1/35‑2 (MQ=255)
 gATGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCg                                   <  1:19566846‑M1/35‑2 (MQ=255)
  aTGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgc                                  >  1:20561706‑M1/1‑33 (MQ=255)
  aTGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgc                                  >  1:11376272‑M1/1‑33 (MQ=255)
  aTGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgc                                  >  1:16704037‑M1/1‑33 (MQ=255)
  aTGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgc                                  >  1:622514‑M1/1‑33 (MQ=255)
  aTGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCAt                                  <  1:8351687/35‑1 (MQ=255)
  aTGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCAt                                  >  1:4457490/1‑35 (MQ=255)
   tGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgca                                 <  1:12109623‑M1/35‑4 (MQ=255)
    gcgcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcat                                <  1:2536497‑M1/35‑5 (MQ=255)
     cgcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCATTGc                               <  1:9247923/35‑1 (MQ=255)
      gcCAGTTGCATAATTTCTTCGTTCGC‑‑GGCgcattg                              <  1:16823223‑M1/35‑7 (MQ=255)
      gcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattg                              <  1:13887884‑M1/35‑7 (MQ=255)
      gcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattg                              >  1:16045058‑M1/1‑29 (MQ=255)
      gcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattg                              <  1:3909573‑M1/35‑7 (MQ=255)
      gcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattg                              >  1:12601666‑M1/1‑29 (MQ=255)
      gcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattg                              >  1:11049635‑M1/1‑29 (MQ=255)
      gcCAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattg                              >  1:18204737‑M1/1‑29 (MQ=255)
       ccAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgc                             <  1:6301406‑M1/35‑8 (MQ=255)
       ccAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgc                             >  1:11666950‑M1/1‑28 (MQ=255)
        cAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgcc                            <  1:948228‑M1/35‑9 (MQ=255)
        cAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgcc                            <  1:7805302‑M1/35‑9 (MQ=255)
        cAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgcc                            >  1:6170677‑M1/1‑27 (MQ=255)
        cAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgcc                            >  1:20040315‑M1/1‑27 (MQ=255)
        cAGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgcc                            >  1:13491868‑M1/1‑27 (MQ=255)
         aGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgccc                           >  1:1024742‑M1/1‑26 (MQ=255)
         aGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgccc                           <  1:17589770‑M1/35‑10 (MQ=255)
         aGTTGCATAATTTCTTCGTTCGC‑‑CGCgcattgccc                           <  1:16771071‑M1/35‑10 (MQ=255)
           ttGCATAATTTCTTCGTTCGC‑‑CGCgcattgcccaa                         >  1:5813837‑M1/1‑24 (MQ=255)
            tGCATAATTTCTTCGTTCGCCGCGCATTGCCCAAt                          >  1:1971495/1‑35 (MQ=21)
            tGCATAATTTCTTCGTTCGCCGCGCATTGCCCAAt                          >  1:8716082/1‑35 (MQ=21)
            tGCATAATTTCTTCGTTCGCCGCGCATTGCCCAAt                          >  1:11383328/1‑35 (MQ=21)
            tGCATAATTTCTTCGTTCGCCGCGCATTGCCCAAt                          >  1:17051941/1‑35 (MQ=21)
            tGCATAATTTCTTCGTTCGCCGCGCATTGCCCAAt                          <  1:1248537/35‑1 (MQ=21)
            tGCATAATTTCTTCGTTCGCCGCGCATTGCCCAAt                          >  1:4586943/1‑35 (MQ=21)
            tGCATAATTTCTTCGTTCGCCGCGCATTGCCCAAt                          >  1:5560615/1‑35 (MQ=21)
            tGCATAATTTCTTCGTTCGCCGCGCATTGCCCAAt                          <  1:640921/35‑1 (MQ=21)
            tGCATAATTTCTTCGTTCGCAGCGCATTGCCCAAt                          <  1:3265608/35‑1 (MQ=25)
            nncNTNNTTTCTTCGTTCGCCGCGCATTGCCCAAt                          <  1:8216328/33‑1 (MQ=12)
             gCATAATTTCTTCGTTCGCCGCGCATTGCCCAATa                         >  1:12940357/1‑35 (MQ=21)
             gCATAATTTCTTCGTTCGCCGCGCATTGCCCAATa                         <  1:18128605/35‑1 (MQ=21)
              cATAATTTCTTCGTTCGCCGCGCATTGCCCAATAc                        >  1:2642220/1‑35 (MQ=21)
              cATAATTTCTTCGTTCGCCGCGCATTGCCCAATAc                        <  1:7647059/35‑1 (MQ=21)
              cATAATTTCTTCGTTCGCCGCGCATTGCCCAATAc                        >  1:6528868/1‑35 (MQ=21)
              cATAATTTCTTCGTTCGCCGCGCATTGCCCAATAc                        <  1:9800110/35‑1 (MQ=21)
              cATAATTTCTTCGTTCGCCGCGCATTGCCCAATAc                        <  1:10386838/35‑1 (MQ=21)
              cATAATTTCTTCGTTCGCCGCGCATTGCACAATan                        <  1:20319554/35‑2 (MQ=16)
               aTAATTTCTTCGTTCGCCGCGCATTGCCCAATACt                       >  1:10172976/1‑35 (MQ=21)
               aTAATTTCTTCGTTCGCCGCGCATTGCCCAATACt                       <  1:3911838/35‑1 (MQ=21)
                tAATTTCTTCGTTCGCCGCGCATTGCCCAATACTg                      <  1:5966075/35‑1 (MQ=21)
                tAATTTCTTCGTTCGCCGCGCATTGCCCAATACTg                      <  1:15217064/35‑1 (MQ=21)
                tAATTTCTTCGTTCGCCGCGCATTGCCCAATACTg                      >  1:7017405/1‑35 (MQ=21)
                tAATTTCTTCGTTCGCCGCGCATTGCCCAATACTg                      <  1:1426862/35‑1 (MQ=21)
                tAATTTCTTCGTTCGCCGCGCATTGCCCAATACTg                      >  1:5683721/1‑35 (MQ=21)
                tAATTTCTTCGTTCGCCGCGCATTGCCAAATACTg                      <  1:13121349/35‑1 (MQ=12)
                tAATTTCTTCGTTCGC‑‑CGCATTGCCCAATACTgcg                    >  1:5877528/1‑35 (MQ=255)
                 aaTTTCTTCGTTCGCCGCGCATTGCCCAATACTgc                     >  1:285157/1‑35 (MQ=21)
                 aaTTTCTTCGTTCGCCGCGCATTGCCCAATACTgc                     <  1:17270186/35‑1 (MQ=21)
                 aaTTTCTTCGTTCGCCGCGCATTGCCCAATACTgc                     <  1:2285936/35‑1 (MQ=21)
                 aaTTTCTTCGTTCGCCGCGCATTGCCAAATACTgc                     <  1:20247175/35‑1 (MQ=12)
                  aTTTCTTCGTTCGCCGCGCATTGCCCAATACTgcg                    >  1:14903721/1‑35 (MQ=21)
                   tttCTTCGTTCGCCGCGCATTGCCCAATACTgcgc                   <  1:10979943/35‑1 (MQ=21)
                   tttCTTCGTTCGCCGCGCATTGCCCAATACTgcgc                   <  1:4191422/35‑1 (MQ=21)
                    ttcttcGTTCGCCGCGCATTGCCCAATACTGcgcg                  <  1:17882356/35‑1 (MQ=21)
                     tcttcGTTCGCCGCGCATTGCCCAATACTGCGCgg                 <  1:15565591/35‑1 (MQ=21)
                      cttcGTTCGCCGCGCATTGCCCAATACTGCGCGGa                <  1:14071038/35‑1 (MQ=21)
                       ttcgttcgCCGCGCATTGCCCAATACTGCGCGGAc               >  1:5433473/1‑35 (MQ=21)
                       ttcgttcgCCGCGCATTGCCCAATACTGCGCGGAc               <  1:16960511/35‑1 (MQ=21)
                       ttcgttcgCCGCGCATTGCCCAATACTGCGCGGAc               <  1:10028700/35‑1 (MQ=21)
                        tcgttcgCCGCGCATTGCCCAATACTGCGCTGAcc              >  1:15964/1‑35 (MQ=16)
                        tcgttcgCCGCGCATTGCCCAATACTGCGCGGAcc              <  1:19314039/35‑1 (MQ=21)
                        tcgttcgCCGCGCATTGCCCAATACTGCGCGGAcc              <  1:1659114/35‑1 (MQ=21)
                        tcgttcgC‑‑CGCATTGCCCAATACTGCGGGGAcccc            >  1:861980/1‑35 (MQ=255)
                           tccgc‑‑cgcgcattgccaaccgtctgctgcgtcgag         <  1:3444995‑M1/33‑28 (MQ=255)
                             cgc‑‑cgcgcattgccaaccgtctgctgcgtcgagtg       >  1:19216754‑M1/1‑6 (MQ=255)
                             cgc‑‑cgcgcattgccaaccgtctgctgcgtcgagtg       <  1:10240782‑M1/35‑30 (MQ=255)
                             cgc‑‑cgcgcattgccaaccgtctgctgcgtcgagtg       <  1:15828005‑M1/35‑30 (MQ=255)
                             cgc‑‑cgcgcattgccaaccgtctgctgcgtcgagtg       >  1:2036906‑M1/1‑6 (MQ=255)
                             ccc‑‑cgcgcattgccaaccgtctgctgcgtcgagtg       <  1:13554013‑M1/33‑30 (MQ=255)
                              gc‑‑cgcgcattgccaaccgtctgctgcgtcgagtgc      >  1:16535902‑M1/1‑5 (MQ=255)
                              gc‑‑cgcgcattgccaaccgtctgctgcgtcgagtgc      <  1:16615536‑M1/35‑31 (MQ=255)
                               c‑‑cgcgcattgccaaccgtctgctgcgtcgagtgcg     >  1:6861025‑M1/1‑4 (MQ=255)
                                cgcgcATTGCCCAATACTGCGCGGACCCCGCGctc      >  1:753977/3‑35 (MQ=255)
                                 gcgcATTGCCCAATACTGCGCGGACCCCGCGctct     >  1:13842225/2‑35 (MQ=255)
                                 gcgcATTGCCCAATACTGCGCGGACCCCGCGctct     >  1:4726829/2‑35 (MQ=255)
                                 gcgcATTGCCCAATACTGCGCGGACCCCGCGctct     >  1:5341458/2‑35 (MQ=255)
                                  cgcgcattgccaaccgtctgctgcgtcgagtgctt    >  1:5153063‑M1/1‑3 (MQ=255)
                                  cgcgcattgccaaccgtctgctgcgtcgagtgcgt    <  1:4098565‑M1/35‑33 (MQ=255)
                                  cgcgcattgccaaccgtctgctgcgtcgagtgcgt    <  1:20179673‑M1/35‑33 (MQ=255)
                                  cgcATTGCCCAATACTGCGCGGACCCCGCGCtctc    >  1:13638545/1‑35 (MQ=255)
                                  cgcATTGCCCAATACTGCGCGGACCCCGCGCtctc    <  1:8183313/35‑1 (MQ=255)
                                   gcgcattgccaaccgtctgctgcgtcgagtgcgtg   >  1:7716244‑M1/1‑2 (MQ=255)
                                   gcgcattgccaaccgtctgctgcgtcgagtgcgtg   >  1:9647125‑M1/1‑2 (MQ=255)
                                   gcATTGCCCAATACTGCGCGGACCCCGCGCTCTCg   <  1:7323638/35‑1 (MQ=255)
                                   gcATTGCCCAATACTGCGCGGACCCCGCGCTCTCg   >  1:19038751/1‑35 (MQ=255)
                                   ccgcattgccaaccgtctgctgcgtcgagtgcgtg   <  1:20099734‑M1/34‑34 (MQ=255)
                                    cgcattgccaaccgtctgctgcgtcgagtgcgtga  >  1:17668040‑M1/1‑1 (MQ=255)
                                    cATTGCCCAATACTGCGCGGACCCCGCGCTCTCGc  >  1:16093583/1‑35 (MQ=255)
                                    |                                  
AGATGCGCCAGTTGCATAATTTCTTCGTTCGC‑‑CGCATTGCCCAATACTGCGCGGACCCCGCGCTCTCGC  >  REL606/473870‑473938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.