New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3092326 =61 (0.590)23 (0.240) 8/44 NT 23.7% coding (505/927 nt) yqhG hypothetical protein
?REL606 4085858 = 92 (0.980)intergenic (+56/‑93) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F

ATGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3092361‑3092326
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGGGTTTTTTTTA  >  REL606/4085858‑4085870
                                                 
ATGTTCAAAGAGTTCGGCAACAACGGCTTCCGGCT                <  1:16211774/35‑1
ATGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCT                >  1:10402276/1‑35
ATGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCT                >  1:8682151/1‑35
ATGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCT                >  1:8103511/1‑35
ATGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCT                >  1:5303383/1‑35
ATGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCT                <  1:19408107/35‑1
ATGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCT                <  1:12525459/35‑1
ATGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCT                <  1:18180531/35‑1
ATGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCT                >  1:1646053/1‑35
 TGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGGTG               >  1:9439520/1‑35
 TGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTG               <  1:9890379/35‑1
 TGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTG               >  1:5023200/1‑35
 TGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTG               >  1:4829462/1‑35
 TGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTG               <  1:3896765/35‑1
 TGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTG               <  1:19193322/35‑1
 TGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTG               <  1:18896467/35‑1
 TGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTG               <  1:11384898/35‑1
  GTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTGG              >  1:13159319/1‑35
  GTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTGG              >  1:960855/1‑35
  GTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTGG              >  1:13143798/1‑35
  GTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTGG              >  1:12301482/1‑35
  GTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTGG              >  1:19893287/1‑35
    TCAAAGAGTTCGGCAACAAAGGCTTCCGGCTGctc            >  1:3059224/1‑32
    TCAAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGN            >  1:4861133/1‑35
    TCAAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGG            >  1:17677181/1‑35
    TCAAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGG            >  1:2273978/1‑35
    TCAAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGG            >  1:12277635/1‑35
    TCAAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGG            >  1:12228793/1‑35
     CAAAGAGTTCTGCAACAAAGGCTTCCGGCTGGGGG           >  1:19560510/1‑35
     CAAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGGG           >  1:1100226/1‑35
     CAAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGGG           >  1:20074789/1‑35
     CAAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGGG           >  1:8172736/1‑35
      AAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGGGg          >  1:11891871/1‑34
      AAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGGGg          >  1:11798468/1‑34
      AAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGGGg          >  1:6171822/1‑34
      AAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGGGg          >  1:8425348/1‑34
      AAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGGGg          >  1:18428014/1‑34
      AAAGAGTTCGGCAACAAAGGCTTCCGGCTGGGGGT          >  1:6635426/1‑35
       AAGAGTTCGGCAACAAAGGCTTCCGGCTGGGGGTT         >  1:16179302/1‑35
        AGAGTTCGGCAACAAAGGCTTCCGGCTGGGGGTTT        >  1:8190845/1‑35
        AGAGTTCGGCAACAAAGGCTTCCGGCTGGGGGTTT        >  1:4785668/1‑35
        AGAGTTCGGCAACAAAGGCTTCCGGCTGGGGGTTT        >  1:8821663/1‑35
         GAGTTCGGCAACAAATGCTTCCGGCTGGGGGTTTT       >  1:4014834/1‑35
         GAGTTCGGCAACAAAGGCTTCCGGCTGGGGGTTTT       >  1:10554707/1‑35
         GAGTTCGGCAACAAAGGCTTCCGGCTGGGGGTTTT       >  1:10478704/1‑35
         GAGTTCGGCAACAAAGGCTTCCGGCTGGGGGGTTT       >  1:18653352/1‑35
          AGTTCGGCAACAAAGTCTTCCGGCTGGGGGTTTTT      >  1:10958569/1‑35
          AGTTCGGCAACAAAGGCTTCCGGCTGGGGGTTTTT      >  1:7359708/1‑35
          AGTTCGGCAACAAAGGCTTCCGGCTGGGGGTTTTT      >  1:16990271/1‑35
          AGTTCGGCAACAAAGGCTTCCGGCTGGGGGGTTTT      >  1:18699186/1‑35
           GTTCGGCAACAAAGGCTTCCGGCTGGGGGTTTTTT     >  1:5448958/1‑35
            TTCGGCAACAAAGGCTTCCGGCTGGGGGTTTTTTT    >  1:8915614/1‑35
            TTCGGCAACAAAGGCTTCCGGCTGGGGGGTTTTTT    >  1:14856549/1‑35
             TCGGCAACAAAGGCTTCCGGCTGGGGGTTTTTTTT   >  1:6055660/1‑35
             TCGGCAACAAAGGCTTCCGGCTGGGGGTTTTTTTT   >  1:8333684/1‑35
             TCGGCAACAAAGGCTTCCGGCTGGGGGTTTTTTTT   >  1:10865020/1‑35
             TCGGCAACAAAGGCTTCCGGCTGGGGGTTTTTTTT   >  1:1857658/1‑35
             TCGGCAACAAAGGCTTCCGGCTGGGGGGTTTTTT  >  1:475822/1‑34
             TCGGCAACAAAGGCTTCCGGCTGGGGGGTTTTTTT   >  1:3593266/1‑35
             TCGGCAACAAAGGCTTCCGGCTGGGGGGTTTTTTT   >  1:952132/1‑35
              CGGCAACAAAGGCTTCCGGCTGGGGGTTTTTTTTA  >  1:17420118/1‑35
                                                 
ATGTTCAAAGAGTTCGGCAACAAAGGCTTCCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3092361‑3092326
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGGGGTTTTTTTTA  >  REL606/4085858‑4085870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.