New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 456653 =60 (0.580)11 (0.140) 4/36 NT 17.7% coding (1034/1194 nt) acrA multidrug efflux system
?REL606 3845122 = 57 (0.740)coding (269/360 nt) rnpA ribonuclease P

Only 100 of 130 total aligned reads displayed.

GCCTGCTTTCAGACCTTCTGTCACCAGCCACTTATCGCCAATAGCCTGGCTTGCAACGATCGGACGGGT  >  REL606/456619‑456687
                                   |                                  
gCCTGCTTTCAGACCTTCTGTCACCAGCCACTTAt                                    >  1:14133892/1‑35 (MQ=255)
gCCTGCTTTCAGACCTTCTGTCACCAGCCACTTAt                                    >  1:5832648/1‑35 (MQ=255)
 ccTGCTTTCAGACCTTCTGTCACCAGCCACTTATc                                   >  1:2810027/1‑35 (MQ=255)
 ccTGCTTTCAGACCTTCTGTCACCAGCCACTTATc                                   >  1:1893337/1‑35 (MQ=255)
 ccTGCTTTCAGACCTTCTGTCACCAGCCACTTATc                                   >  1:17411338/1‑35 (MQ=255)
 ccTGCTTTCAGACCTTCTGTCACCAGCCACTTATc                                   >  1:8042331/1‑35 (MQ=255)
 ccTGCTTTCAGACCTTCTGTCACCAGCCACTTATc                                   >  1:17036073/1‑35 (MQ=255)
 agagcacggttatcgaggtcggcaacccctttttt                                    <  1:6654269‑M1/1‑1 (MQ=255)
 agagcacggttatcgaggtcggcaacccctttttt                                    >  1:7328156‑M1/35‑35 (MQ=255)
 agagcacggttatcgaggtcggcaacccctttttt                                    >  1:13678828‑M1/35‑35 (MQ=255)
  gagcacggttatcgaggtcggcaacccctttttTc                                   >  1:13851609‑M1/34‑35 (MQ=255)
  gagcacggttatcgaggtcggcaacccctttttTc                                   >  1:13444289‑M1/34‑35 (MQ=255)
  cTGCTTTCAGACCTTCTGTCACCAGCCACTTATCg                                  >  1:16052708/1‑35 (MQ=255)
  cTGCTTTCAGACCTTCTGTCACCAGCCACTTATCg                                  >  1:18843851/1‑35 (MQ=255)
  cTGCTTTCAGACCTTCTGTCACCAGCCACTTATCg                                  >  1:18150504/1‑35 (MQ=255)
  cTGCTTTCAGACCTTCTGTCACCAGCCACTTATCg                                  >  1:14036280/1‑35 (MQ=255)
   tGCTTTCAGACCTTCTGTCACCAGCCACTTATCGc                                 >  1:8021408/1‑35 (MQ=255)
   tGCTTTCAGACCTTCTGTCACCAGCCACTTATCGc                                 >  1:10510020/1‑35 (MQ=255)
   tGCTTTCAGACCTTCTGTCACCAGACACTTATCGc                                 <  1:1998060/35‑1 (MQ=255)
   agcacggttatcgaggtcggcaacccctttttTCg                                  <  1:12014012‑M1/3‑1 (MQ=255)
   agcacggttatcgaggtcggcaacccctttttTCg                                  <  1:15440595‑M1/3‑1 (MQ=255)
   agcacggttatcgaggtcggcaacccctttttTCg                                  >  1:10201307‑M1/33‑35 (MQ=255)
   agcacggttatcgagggcggcaacccctttttTCg                                  <  1:3385861‑M1/3‑1 (MQ=255)
    gcacggttatcgagttcggcaacccctttttTCGc                                 >  1:13627546‑M1/32‑35 (MQ=255)
    gcacggttatcgaggtcggcaacccctttttTCGc                                 >  1:1598080‑M1/32‑35 (MQ=255)
    gCTTTCAGACCTTCTGTCACCAGCCACTTATCGcc                                >  1:13028333/1‑35 (MQ=255)
     cacggttatcgagggcggcaacccctttttTCGcc                                <  1:7465864‑M1/5‑1 (MQ=255)
     cTTTCAGTCCTTCTGTCACCAGCCACTTATCGCCa                               >  1:18995468/1‑35 (MQ=255)
     cTTTCAGACCTTCTGTCACCAGCCACTTATCGCCa                               >  1:12948098/1‑35 (MQ=255)
      tttCAGACCTTCTGTCACCAGCCACTTATCGCCaa                              >  1:16686829/1‑35 (MQ=255)
      acggttatcgaggtcggcaacccctttttTCGCCa                               >  1:6811869‑M1/30‑35 (MQ=255)
       ttCAGACCTTCTGTCACCAGCCACTTATCGCCCAt                             >  1:898762/1‑35 (MQ=255)
       ttCAGACCTTCTGTCACCAGCCACTTATCGCCAAt                             >  1:18208538/1‑35 (MQ=255)
        tCAGACCTTCTGTCACCAGCCACTTATCGCCAATa                            >  1:10198955/1‑35 (MQ=255)
         cAGACCTTCTGTCACCAGCCACTTATCGCCAATAg                           >  1:1631750/1‑35 (MQ=255)
          aGACCTTCTGTCACCAGCCACTTATCGCCAATAGc                          >  1:8274192/1‑35 (MQ=255)
          aGACCTTCTGTCACCAGCCACTTATCGCCAATAGc                          >  1:4506104/1‑35 (MQ=255)
          aGACCTTCTGTCACCAGCCACTTATCGCCAATAGc                          >  1:9211248/1‑35 (MQ=255)
           gACCTTCTGTCACCAGCCACTTATCGCCAATAGcc                         >  1:5382110/1‑35 (MQ=255)
            aCCTTCTGTCACCAGCCACTTATCGCCAATAGCCt                        >  1:15845305/1‑35 (MQ=255)
            aCCTTCTGTCACCAGCCACTTATCGCCAATAGCCt                        >  1:6946145/1‑35 (MQ=255)
             ccTTCTGTCACCAGCCACTTATCGCCAATAGCCTg                       >  1:16339898/1‑35 (MQ=255)
             ccTTCTGTCACCAGCCACTTATCGCCAATAGCCTg                       >  1:5629090/1‑35 (MQ=255)
              cTTCTGTCACCAGCCACTTATCGCCAATAGCCTgg                      >  1:11821538/1‑35 (MQ=255)
              cTTCTGTCACCAGCCACTTATCGCCAATAGCCTgg                      >  1:20569761/1‑35 (MQ=255)
              cTTCTGTCACCAGCCACTTATCGCCAATAGCCTgg                      >  1:14157725/1‑35 (MQ=255)
               ttCTCTCACCAGCCACTTATCGCCAATAGCCTGGc                     >  1:17466819/1‑35 (MQ=255)
                tCTGTCACCAGCCACTTATCGCCAATAGCCTGGCt                    >  1:4670459/1‑35 (MQ=255)
                 cTGTCACCAGCCACTTATCGCCAATAGCCTGGCtt                   >  1:16757973/1‑35 (MQ=255)
                  tGTCACCAGCCACTTATCGCCAATATCCTGGCTTg                  >  1:13682925/1‑35 (MQ=255)
                  tGTCACCAGCCACTTATCGCCAATAGCCTGGCTTg                  >  1:9175319/1‑35 (MQ=255)
                  tGTCACCAGCCACTTATCGCCAATAGCCTGGCTTg                  >  1:14586537/1‑35 (MQ=255)
                  tGTCACCAGCCACTTATCGCCAATAGCCTGGCTTg                  >  1:8197669/1‑35 (MQ=255)
                  tGTCACCAGCCACTTATCGCCAATAGCCTGGCTTg                  >  1:17597143/1‑35 (MQ=255)
                    tCACCAGCCACTTATCGCCAATAGCCTGGCTTGCa                >  1:11728884/1‑35 (MQ=255)
                    tCACCAGCCACTTATCGCCAATAGCCTGGCTTGCa                >  1:3477918/1‑35 (MQ=255)
                      aCCAGCCACTTATCGCCAATAGCCTGGCTTGCAAc              >  1:8084451/1‑35 (MQ=255)
                      aCCAGCCACTTATCGCCAATAGCCTGGCTTGCAAc              >  1:12331982/1‑35 (MQ=255)
                       ccAGCCACTTATCGCCAATAGCCTGGCTTGCAACg             >  1:16827969/1‑35 (MQ=255)
                       ccAGCCACTTATCGCCAATAGCCTGGCTTGCAACg             >  1:11400790/1‑35 (MQ=255)
                       ccAGCCACTTATCGCCAATAGCCTGGCTTGCAACg             >  1:7211354/1‑35 (MQ=255)
                       ccACCCACTTTTTCGCCAATAGCCTGGCTTGCAAc              <  1:18409654/35‑1 (MQ=16)
                        cccccctttttTCGCCAATAGCCTGGCTTGCAACg             >  1:4000148‑M1/12‑35 (MQ=255)
                        cAGCCACTTATCGCCAATAGCCTGGCTTGGAATGa            >  1:3957724/1‑35 (MQ=37)
                        cAGCCACTTATCGCCAATAGCCTGGCTTGCAACGa            >  1:15944943/1‑35 (MQ=255)
                         aGCCACTTATCGCCAATAGCCTGGCTTGCAACGAt           >  1:11739998/1‑35 (MQ=255)
                         aGCCACTTATCGCCAATAGCCTGGCTTGCAACGAt           >  1:3504334/1‑35 (MQ=255)
                         aGCCACTTATCGCCAATAGCCTGGCTTGCAACGAt           >  1:17923151/1‑35 (MQ=255)
                         aGCCACTTATCGCCAATAGCCTGGCTTGCAACGAt           >  1:733268/1‑35 (MQ=255)
                          gCCACTTATCGCCAATAGCCTGGCTTGCAACGATc          >  1:12331023/1‑35 (MQ=255)
                          gCCACTTATCGCCAATAGCCTGGCTTGCAACGATc          >  1:4077205/1‑35 (MQ=255)
                          cccctttttTCGCCAATAGCCTGGCTTGCAACGAt           >  1:20595424‑M1/10‑35 (MQ=255)
                          cccctttttCCGCCAATAGCCTGGCTTGCAACGAt           >  1:1002709‑M1/10‑35 (MQ=255)
                          accctttttTCGCCAATAGCCTGGCTTGAAACGAt           >  1:8543281‑M1/10‑35 (MQ=255)
                           ccctttttTCGCCAATAGCCTGGCTTGCAACGATc          >  1:9328705‑M1/9‑35 (MQ=255)
                           cccattttTCGCCAATAGCCTGGCTTGCAACGATc          >  1:14891799‑M1/9‑35 (MQ=255)
                           ccACTTATCGCCAATAGCCTGGCTTGCAACGATCg         >  1:491469/1‑35 (MQ=255)
                           ccACTTATCGCCAATAGCCTGGCTTGCAACGATCg         >  1:2556068/1‑35 (MQ=255)
                           ccACTTATCGCCAATAGCCTGGCTTGCAACGACCg         >  1:19676391/1‑35 (MQ=255)
                            cctttttTCGCCAATAGCCTGGCTTGCAACGATCg         >  1:9632917‑M1/8‑35 (MQ=255)
                            cctttttTCGCCAATAGCCTGGCTTGCAACGATCg         >  1:14630597‑M1/8‑35 (MQ=255)
                            cACTTATCGCCAATAGCCTGGCTTGCAACGATCgg        >  1:4279437/1‑35 (MQ=255)
                            cACTTATCGCCAATAGCCTGGCTTGCAACGATCgg        >  1:11011840/1‑35 (MQ=255)
                             ctttttCCGCCAATAGCCTGGCTTGCAACGATCgg        >  1:15457069‑M1/7‑35 (MQ=255)
                             aCTTATCGCCAATAGCCTGGCTTGCAACGATCGGa       >  1:7774046/1‑35 (MQ=255)
                              tctttTCGCCAATAGCCTGGCTTGCAACGATCGGa       >  1:17390382‑M1/6‑35 (MQ=255)
                              cttttTCCCCAATAGCCTGGCTTGCAACGATCGGa       >  1:10555442‑M1/6‑35 (MQ=255)
                              cTTATCGCCAATAGCCTGGCTTGCAACGATCGGAc      >  1:1555058/1‑35 (MQ=255)
                              cTTATCGCCAATAGCCTGGCTTGCAACGATCGGAc      >  1:5204848/1‑35 (MQ=255)
                               ttttTCGCCAATAGCCTGGCTTGCAACGATCGGAc      >  1:573503‑M1/5‑35 (MQ=255)
                               ttttTCCCCAATAGCCTGGCTTGCAACGATCGGAc      >  1:1946563‑M1/5‑35 (MQ=255)
                                 aTCGCCAATAGCCTGGCTTGCAACGATCTGACggg   >  1:17676738/1‑35 (MQ=255)
                                 aTCGCCAATAGCCTGGCTTGCAACGATCGGAAggg   >  1:8725688/1‑35 (MQ=255)
                                 aTCGCCAATAGCCTGGCTTGCAACGATCCGACggg   >  1:8124408/1‑35 (MQ=255)
                                  tTCCCCAATAGCCTGGCTTGCAACGATCGGACggg   >  1:4517363‑M1/2‑35 (MQ=255)
                                   TCGCCAATAGCCTGGCTTGCAACGATCGGAcggga  <  1:8286418‑M1/35‑2 (MQ=255)
                                   TCGCCAATAGCCTGGCTTGCAACGATCGGACGGGt  >  1:16009544‑M1/1‑35 (MQ=255)
                                   TCGCCAATAGCCTGGCTTGCAACGATCGGACGGGt  >  1:11630806‑M1/1‑35 (MQ=255)
                                   TCGCCAATAGCCTGGCTTGCAACGATCGGACGGGt  <  1:18954949‑M1/35‑1 (MQ=255)
                                   TCGCCAATAGCCTGGCTTGCAACGATCGGACGGGt  <  1:9495655‑M1/35‑1 (MQ=255)
                                   |                                  
GCCTGCTTTCAGACCTTCTGTCACCAGCCACTTATCGCCAATAGCCTGGCTTGCAACGATCGGACGGGT  >  REL606/456619‑456687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.