New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3820609 =84 (0.820)7 (0.100) 3/34 NT 12.1% coding (425/924 nt) yidL predicted DNA‑binding transcriptional regulator
?REL606 = 4248913 42 (0.580)coding (568/714 nt) aphA acid phosphatase/phosphotransferase, class B, non‑specific

Only 100 of 154 total aligned reads displayed.

GATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATCAGGAACTCACTGAAGTT  >  REL606/3820575‑3820643
                                  |                                  
gATATTCCCGTTGGTCAGCAAAGCGTTATTTATaa                                    >  1:16388406/1‑35 (MQ=255)
gATATTCCCGTTGGTCAGCAAAGCGTTATTTATaa                                    <  1:16028562/35‑1 (MQ=255)
caatggctgcaggataaaaatatccgaatttttta                                    >  1:10258965‑M1/35‑35 (MQ=255)
 atatTCTCGTTGGTCAGCAAAGCGTTATTTATAAt                                   >  1:613868/1‑35 (MQ=255)
 atatTCCCGTTGGTCAGCAAAGCGTTATTTATAAt                                   <  1:8013350/35‑1 (MQ=255)
 atatTCCCGTTGGTCAGCAAAGCGTTATTTATAAt                                   <  1:11322215/35‑1 (MQ=255)
 atatTCCCGTTGGTCAGCAAAGCGTTATTTATAAt                                   >  1:20609167/1‑35 (MQ=255)
 atatTCCCGTTGGTCAGCAAAGCGTTATTTATAAt                                   <  1:8443632/35‑1 (MQ=255)
 aatggctgcaggataaaaatatccgaattttttAt                                   >  1:7770036‑M1/34‑35 (MQ=255)
  attgctgcaggataaaaatatccgaattttttATg                                  <  1:16605262‑M1/3‑1 (MQ=255)
  atggctgcaggataaaaatatccgaattttttATg                                  >  1:1594552‑M1/33‑35 (MQ=255)
  atggctgcaggataaaaatatccgaattttttATg                                  >  1:3752440‑M1/33‑35 (MQ=255)
   tggctgcaggataaaaatatccgaattttttATgg                                 <  1:10018677‑M1/4‑1 (MQ=255)
   tggctgcaggataaaaatatccgaattttttATgg                                 <  1:18581216‑M1/4‑1 (MQ=255)
   tggctgcaggataaaaatatccgaattttttATgg                                 <  1:9399895‑M1/4‑1 (MQ=255)
   atTCCCGTTGGTCAGCAAAGCGTTATTTATAATgg                                 <  1:959807/35‑1 (MQ=255)
   atTCCCGTTGGTCAGCAAAGCGTTATTTATAATgg                                 >  1:10823029/1‑35 (MQ=255)
   atTCCCGTTGGTCAGCAAAGCGTTATTTATAATgg                                 <  1:5869721/35‑1 (MQ=255)
   atTCCCGTTGGTCAGCAAAGCGTTATTTATAATgg                                 >  1:5656221/1‑35 (MQ=255)
    ggctgcaggataaaaatatccgaattttttATGGc                                >  1:1973674‑M1/31‑35 (MQ=255)
    ggctgcaggataaaaatatccgaattttttATGGc                                >  1:15086578‑M1/31‑35 (MQ=255)
     tCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCg                               <  1:12137887/35‑1 (MQ=255)
     tCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCg                               >  1:19284055/1‑35 (MQ=255)
     gctgcaggataaaaatatccgaattttttATGGCg                               >  1:14941281‑M1/30‑35 (MQ=255)
     gctgcaggataaaaatatccgaattttttATGGCg                               >  1:3972729‑M1/30‑35 (MQ=255)
      ctgcaggataaaaatatccgaattttttATGGCGa                              <  1:7842982‑M1/7‑1 (MQ=255)
      ctgcaggataaaaatatccgaattttttATGGCGa                              >  1:17078098‑M1/29‑35 (MQ=255)
      ctgcaggataaaaatatccgaattttttATGGCGa                              <  1:17392060‑M1/7‑1 (MQ=255)
      cccGTTGGTCAGCAAAGCGTTATTTATAATGGCGa                              >  1:19633937/1‑35 (MQ=255)
       tgcaggataaaaatatccgaattttttATGGCgac                             <  1:9471682‑M1/8‑2 (MQ=255)
       tgcaggataaaaatatccgaattttttATGGCGaa                             <  1:19507092‑M1/8‑1 (MQ=255)
       tgcaggataaaaatatccgaattttttATGGCGaa                             <  1:14047611‑M1/8‑1 (MQ=255)
       ccGTTGGTCAGCAAAGCGTTATTTATAATGGCGaa                             >  1:6445416/1‑35 (MQ=255)
       ccGTTGGTCAGCAAAGCGTTATTTATAATGGCGaa                             <  1:7932042/35‑1 (MQ=255)
        cGTTGGTCAGCAAAGCGTTATTTATAATGGCGaaa                            >  1:7697343/1‑35 (MQ=255)
        cGTTGGTCAGCAAAGCGTTATTTATAATGGCGaaa                            <  1:467025/35‑1 (MQ=255)
         gTTGGTCAGCAAAGCGTTATTTATAATGGCGAAAt                           <  1:5056420/35‑1 (MQ=255)
         gTTGGTCAGCAAAGCGTTATTTATAATGGCGAAAt                           <  1:17116127/35‑1 (MQ=255)
         gTTGGTCAGCAAAGCGTTATTTATAATGGCGAAAt                           <  1:8890668/35‑1 (MQ=255)
         caggataaaaatatccgaattttttATGGCGAAAt                           <  1:838534‑M1/10‑1 (MQ=255)
           tGGTCAGCAAAGCGTTATTTATAATGGCGAAAttt                         <  1:1817587/35‑1 (MQ=255)
           tGGTCAGCAAAGCGTTATTTATAATGGCGAAAttt                         >  1:15542330/1‑35 (MQ=255)
           tGGTCAGCAAAGCGTTATTTATAATGGCGAAAttt                         >  1:5801984/1‑35 (MQ=255)
            ggTCAGCAAAGCGTTATTTATAATGGCGAAATTta                        >  1:16710490/1‑35 (MQ=255)
             gTCAGCAAAGCGTTATTTATAATGGCGAAATTtat                       <  1:4894977/35‑1 (MQ=255)
             gTCAGCAAAGCGTTATTTATAATGGCGAAATTtat                       <  1:11536275/35‑1 (MQ=255)
             gTCAGCAAAGCGTTATTTATAATGGCGAAATTtat                       <  1:9350590/35‑1 (MQ=255)
             gTCAGCAAAGCGTTATTTATAATGGCGAAATTtat                       <  1:8665292/35‑1 (MQ=255)
             ataaaaatatccgaattttttATGGCGAAAAttaa                       <  1:14252996‑M1/14‑2 (MQ=255)
              taaaaatatccgaattttttATGGCGAAAATtata                      <  1:7664345‑M1/15‑1 (MQ=255)
               cAGCAAAGCGTTATTTATAATGGCGAAATTTATaa                     <  1:20031900/35‑1 (MQ=255)
               cAGCAAAGCGTTATTTATAATGGCGAAATTTATaa                     >  1:3823556/1‑35 (MQ=255)
               cAGCAAAGCGTTATTTATAATGGCGAAATTTATaa                     >  1:2852009/1‑35 (MQ=255)
                aaaatatccgaattttttATGGCGAAAATTATAAt                    <  1:5475791‑M1/17‑1 (MQ=255)
                aaaatatccgaattttttATGGCGAAAATTATAAt                    <  1:13713380‑M1/17‑1 (MQ=255)
                aGCAAAGCGTTATTTATAATGGCGAAATTTATAAt                    <  1:151249/35‑1 (MQ=255)
                aGCAAAGCGTTATTTATAATGGCGAAATTTATAAt                    >  1:20331013/1‑35 (MQ=255)
                aGCAAAGCGTTATTTATAATGGCGAAATTTATAAt                    <  1:19873996/35‑1 (MQ=255)
                 gCAAAGCGTTATTTATAATGGCGAAATTTATAATc                   >  1:2511518/1‑35 (MQ=255)
                 gCAAAGCGTTATTTATAATGGCGAAATTTATAATc                   <  1:14719458/35‑1 (MQ=255)
                 gCAAAGCGTTATTTATAATGGCGAAATTTATAATc                   >  1:2329366/1‑35 (MQ=255)
                 gCAAAGCGTTATTTATAATGGCGAAATTTATAATc                   <  1:7235384/35‑1 (MQ=255)
                 aaatatccgaattttttATGGCGAAACTTATAatt                   <  1:15657991‑M1/18‑2 (MQ=255)
                 aaatatccgaattttttATGGCGAAAATTATAatt                   <  1:14121080‑M1/18‑2 (MQ=255)
                  cAAAGCGTTATTTATAATGGCGAAATTTATAATCa                  <  1:16130016/35‑1 (MQ=255)
                   aaaGCGTTATTTATAATGGCGAAATTTATAATCAg                 >  1:6675019/1‑35 (MQ=255)
                   aaaGCGTTATTTATAATGGCGAAATTTATAATCAg                 <  1:12351924/35‑1 (MQ=255)
                   aaaGCGTTATTTATAATGGCGAAATTTATAATCAg                 <  1:20328667/35‑1 (MQ=255)
                    aaGCGTTATTTATAATGGCGAAATTTATAATCAgg                >  1:19004272/1‑35 (MQ=255)
                    aaGCGTTATTTATAATGGCGAAATTTATAATCAgg                <  1:8731700/35‑1 (MQ=255)
                     aGCGTTATTTATAATGGCGAAATTTATAATCAGGa               >  1:10407508/1‑35 (MQ=255)
                      gCGTTATTTATAATGGCGAAATTTATAATCAGGaa              >  1:4062836/1‑35 (MQ=255)
                      gCGTTATTTATAATGGCGAAATTTATAATCAGGaa              <  1:8526220/35‑1 (MQ=255)
                       cGTTATTTATAATGGCGAAATTTATAATCAGGAAc             <  1:4374795/35‑1 (MQ=255)
                       cGTTATTTATAATGGCGAAATTTATAATCAGGAAc             <  1:19290665/35‑1 (MQ=255)
                        gTTATTTATAATGGCGAAATTTATAATCAGGAACt            >  1:17977231/1‑35 (MQ=255)
                        gTTATTTATAATGGCGAAATTTATAATCAGGAACt            <  1:17314142/35‑1 (MQ=255)
                        gTTATTTATAATGGCGAAATTTATAATCAGGAACt            >  1:13421105/1‑35 (MQ=255)
                        gTTATTTATAATGGCGAAATTTATAATCAGGAACt            >  1:12491084/1‑35 (MQ=255)
                        gTTATTTATAATGGCGAAATTTATAATCAGGAACt            >  1:457933/1‑35 (MQ=255)
                          tatttatAATGGCGAAATTTATAATCAGGAACTCa          >  1:11032138/1‑35 (MQ=255)
                          tatttatAATGGCGAAATTTATAATCAGGAACTCa          <  1:18728868/35‑1 (MQ=255)
                           atttatAATGGCGAAATTTATAATCAGGAACTCAc         >  1:8771891/1‑35 (MQ=255)
                           atttatAATGGCGAAATTTATAATCAGGAACTCAc         >  1:10609444/1‑35 (MQ=255)
                           atttatAATGGCGAAATTTATAATCAGGAACTCAc         >  1:18408626/1‑35 (MQ=255)
                            tttatAATGGCGAAATTTATAATCAGGAACTCACt        <  1:7139817/35‑1 (MQ=255)
                            tttatAATGGCGAAATTTATAATCAGGAACTCACt        >  1:19411230/1‑35 (MQ=255)
                             ttatAATGGCGAAATTTATAATCAGGAACTCACTg       <  1:6986947/35‑1 (MQ=255)
                              tataATGGCGAAATTTATAATCAGGAACTCACTGa      <  1:5877320/35‑1 (MQ=255)
                              tataATGGCGAAATTTATAATCAGGAACTCACTGa      >  1:12281887/1‑35 (MQ=255)
                              tataATGGCGAAATTTATAATCAGGAACTAACTGa      <  1:5560070/35‑1 (MQ=255)
                               ataATGGCGAAATTTATAATCAGGAACTCACTGaa     <  1:13655516/35‑1 (MQ=255)
                                taATGGCGAAATTTATAATCAGGAACTCACTGAAg    >  1:3028629/1‑35 (MQ=255)
                                taATGGCGAAATTTATAATCAGGAACTCACTGAAg    >  1:9620698/1‑35 (MQ=255)
                                 aaTGGCGAAATTTATAATCAGGAACTCACTGAAGt   <  1:14351501/35‑1 (MQ=255)
                                 aaTGGCGAAATTTATAATCAGGAACTCACTGAAGt   >  1:20508929/1‑35 (MQ=255)
                                 aaTGGCGAAATTTATAATCAGGAACTCACTGAAGt   >  1:5273230/1‑35 (MQ=255)
                                  ATGGCGAAATTTATAATCAGGAACTCACTGAAGtt  >  1:7343612‑M1/1‑35 (MQ=255)
                                  ATGGCGAAATTTATAATCAGGAACTCACTGAAGtt  >  1:1507088‑M1/1‑35 (MQ=255)
                                  ATGGCGAAATTTATAATCAGGAACTCACTGAAGtt  >  1:5561779‑M1/1‑35 (MQ=255)
                                  |                                  
GATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATCAGGAACTCACTGAAGTT  >  REL606/3820575‑3820643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.