Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,648,342 IS1 (–) +9 bp 28.2% intergenic (+195/‑221) ynfM → / → asr predicted transporter/acid shock protein precursor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1323488NA (NA)22 (0.210) 18/48 NT 26.6% noncoding (768/768 nt) IS1 repeat region
?REL606 = 1648350 38 (0.590)intergenic (+203/‑221) ynfM/asr predicted transporter/acid shock protein precursor
* ? REL606 1648342 =36 (0.600)7 (0.090) 6/36 NT 13.1% intergenic (+195/‑229) ynfM/asr predicted transporter/acid shock protein precursor
?REL606 = 3024712 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 148 total aligned reads displayed.

TAAAACACTATCAATAAGTTGGAGTCATTACCAAGGCGACTATCATTATCAAATTCATTATCAGGT  >  REL606/1323457‑1323522
                               |                                  
tAAAACGCTATCAATAAGTTGGAGTCATTACCAAg                                 <  1:18671969/35‑1 (MQ=12)
tAAAACACTATCAATAAGTTGGAGTCATTACCAAg                                 <  1:9641903/35‑1 (MQ=32)
tAAAACACTATCAATAAGTTGGAGTCATTACCAAg                                 <  1:3887549/35‑1 (MQ=32)
tAAAACACTATCAATAAGTTGGAGTCATTACCAAg                                 <  1:18519323/35‑1 (MQ=32)
 aaaaCACTATCAATAAGTTGGAGTCATTACCAAgg                                <  1:5174835/35‑1 (MQ=35)
  aaaCACTATCAATAAGTTGGAGTCATTACCAAGGc                               <  1:19230942/35‑1 (MQ=38)
  aaaCACTATCAATAAGTTGGAGTCATTACAAAGGc                               <  1:412931/35‑1 (MQ=255)
   aaCACTATCAATAAGTTGGAGTCATTACCAAGGCg                              >  1:8627463/1‑35 (MQ=40)
    acacTATCAATAAGTTGGAGTCATTACCAAGGCGa                             <  1:13475173/35‑1 (MQ=255)
    acacTATCAATAAGTTGGAGTCATTACCAAGGCGa                             >  1:7826216/1‑35 (MQ=255)
    acacTATCAATAAGTTGGAGTCATTACCAAGGCGa                             >  1:2259901/1‑35 (MQ=255)
     cccTATCAATAAGTTGGAGTCATTACCAAGGCGAc                            <  1:26478/33‑1 (MQ=255)
     cacTATCAATAAGTTGGAGTCATTACCAAGGCGAc                            <  1:3343455/35‑1 (MQ=255)
     cacTATCAATAAGTTGGAGTCATTACCAAGGCGAc                            >  1:2010271/1‑35 (MQ=255)
     cacTATCAATAAGTTGGAGTCATTACCAAGGCGAc                            <  1:16045761/35‑1 (MQ=255)
     cacTATCAATAAGTTGGAGTCATTACCAAGGCGAc                            <  1:4000773/35‑1 (MQ=255)
      acTATCAATAAGTTGGAGTCATTACCAAGGCGACt                           <  1:677448/35‑1 (MQ=255)
      acTATCAATAAGTTGGAGTCATTACCAAGGCGACt                           <  1:4803917/35‑1 (MQ=255)
      acTATCAATAAGTTGGAGTCATTACCAAGGCGACt                           >  1:4665036/1‑35 (MQ=255)
       cTATCAATAAGTTGGAGTCATTACCAAGGCGACTa                          <  1:1007343/35‑1 (MQ=255)
       cTATCAATAAGTTGGAGTCATTACCAAGGCGACTa                          <  1:1793509/35‑1 (MQ=255)
       cTATCAATAAGTTGGAGTCATTACCAAGGCGACTa                          >  1:1308196/1‑35 (MQ=255)
        tATCAATAAGTTGGAGTCATTACCAAGGCGACTAt                         <  1:4157344/35‑1 (MQ=255)
        tATCAATAAGTTGGAGTCATTACCAAGGCGACTAt                         <  1:1141183/35‑1 (MQ=255)
        tATCAATAAGTTGGAGTCATTACCAAGGCGACTAt                         <  1:445099/35‑1 (MQ=255)
         aTCAATAAGTTGGAGTCATTACCAAGGCGACTATc                        <  1:6817269/35‑1 (MQ=255)
         aTCAATAAGTTGGAGTCATTACCAAGGCGACTATc                        <  1:7135711/35‑1 (MQ=255)
         aTCAATAAGTTGGAGTCATTACCAAGGCGACTATc                        >  1:12163725/1‑35 (MQ=255)
         aTCAATAAGTTGGAGTCATTACCAAGGCGACTATc                        >  1:7856513/1‑35 (MQ=255)
          tCAATAAGTTGTAGTCATTACCAAGGCGACTATCa                       >  1:2814961/1‑35 (MQ=255)
          tCAATAAGTTGGAGTCATTACCAAGGCGACTATCa                       >  1:16898638/1‑35 (MQ=255)
           cAATAAGTTGGAGTCATTACCAAGGCGACTATCAt                      >  1:4361960/1‑35 (MQ=255)
           cAATAAGTTGGAGTCATTACCAAGGCGACTATCAt                      >  1:2847289/1‑35 (MQ=255)
           cAATAAGTTGGAGTCATTACCAAGGCGACTATCAt                      >  1:3176632/1‑35 (MQ=255)
           cAATAAGTTGGAGTCATTACCAAGGCGACTATCAt                      <  1:11612332/35‑1 (MQ=255)
           cAATAAGTTGGAGTCATTACCAAGGCGACTATCAt                      >  1:12171537/1‑35 (MQ=255)
           cAATAAGTTGGAGTCATTACCAAGGCGACTATCAt                      <  1:3636209/35‑1 (MQ=255)
            aaTAAGTTGGAGTCATTACCAAGGCTACTATCAtt                     >  1:9160855/1‑35 (MQ=255)
            aaTAAGTTGGAGTCATTACCAAGGCGACTATCAtt                     >  1:4375378/1‑35 (MQ=255)
            aaTAAGTTGGAGTCATTACCAAGGCGACTATCAtt                     <  1:2699058/35‑1 (MQ=255)
            aaTAAGTTGGAGTCATTACCAAGGCGACTATCAtt                     >  1:7836379/1‑35 (MQ=255)
            aaTAAGTGGGAGTCATTACCAAGGCGACTATCAtt                     <  1:17384956/35‑1 (MQ=255)
             aTAAGTTGGAGTCATTACCAAGGCGACTATCATTa                    >  1:11082748/1‑35 (MQ=255)
             aTAAGTTGGAGTCATTACCAAGGCGACTATCATTa                    >  1:13373537/1‑35 (MQ=255)
             aTAAGTTGGAGTCATTACCAAGGCGACTATCATTa                    >  1:19821029/1‑35 (MQ=255)
             aTAAGTTGGAGTCATTACCAAGGCGACTATCATTa                    >  1:1989680/1‑35 (MQ=255)
             aTAAGTTGGAGTCATTACCAAGGCGACTATCATTa                    <  1:18046494/35‑1 (MQ=255)
             aTAAGTTGGAGTCATTACCAAGGCGACTATCATTa                    >  1:12762005/1‑35 (MQ=255)
              tAAGTTGGAGTCATTACCAAGGCGACTATCATTAt                   >  1:11957689/1‑35 (MQ=255)
               aaGTTGGAGTCATTACCAAGGCGACTATCATTATc                  >  1:3419401/1‑35 (MQ=255)
               aaGTTGGAGTCATTACCAAGGCGACTATCATTATc                  >  1:14093435/1‑35 (MQ=255)
                aGTTGGAGTCATTACCAAGGCGACTATCATTATCa                 <  1:4629883/35‑1 (MQ=255)
                aGTTGGAGTCATTACCAAGGCGACTATCATTATCa                 >  1:5843828/1‑35 (MQ=255)
                aGTTGGAGTCATTACCAAGGCGACTATCATTATCa                 >  1:19226317/1‑35 (MQ=255)
                aGTTGGAGTCATTACCAAGGCGACTATCATTATCa                 >  1:13098346/1‑35 (MQ=255)
                aGTTGGAGTCATTACCAAGGCGACTATCATTATCa                 <  1:14768529/35‑1 (MQ=255)
                aGTTGGAGTCATTACCAAGGCGACTATCATTATCa                 <  1:1608228/35‑1 (MQ=255)
                aGTTGGAGTCATTACCAAGGCGACTATCATTATCa                 <  1:7781348/35‑1 (MQ=255)
                 tctGGAGTCATTACCAAGGCGACTATCATTATCaa                <  1:1592443/33‑1 (MQ=255)
                 gTTGGAGTCATTACCAAGGCGACTATCATTATCaa                >  1:1190135/1‑35 (MQ=255)
                 gTTGGAGTCATTACCAAGGCGACTATCATTATCaa                <  1:10945511/35‑1 (MQ=255)
                 gTTGGAGTCATTACCAAGGCGACTATCATTATCaa                >  1:9285996/1‑35 (MQ=255)
                 gTTGGAGTCATTACCAAGGCGACTATCATTATCaa                <  1:16596230/35‑1 (MQ=255)
                 gTTGGAGTCATTACCAAGGCGACTATCATTATCaa                >  1:10623510/1‑35 (MQ=255)
                 gTTGGAGTCATTACCAAGGCGACTATCATTATCaa                <  1:2911573/35‑1 (MQ=255)
                 gTTGGAGTCATTACCAAGGCGACTATCATTATCaa                >  1:7155059/1‑35 (MQ=255)
                   tGGAGTCATTACCAAGGCGACTATCATTATCAAAt              >  1:14683965/1‑35 (MQ=255)
                   tGGAGTCATTACCAAGGCGACTATCATTATCAAAt              <  1:18576306/35‑1 (MQ=255)
                    ggAGTCATTACCAAGGCGACTATCATTATCAAAtt             <  1:7615648/35‑1 (MQ=255)
                     gAGTCATTACCAAGGCGACTATCATTATCAAATTc            >  1:6088790/1‑35 (MQ=255)
                      aGTCATTACCAAGGCGACTATCATTATCAAATTCa           >  1:5314448/1‑35 (MQ=255)
                      aGTCATTACCAAGGCGACTATCATTATCAAATTCa           <  1:15784089/35‑1 (MQ=255)
                       gTCATTACCAAGGCGACTATCATTATCAAATTCAt          <  1:20000294/35‑1 (MQ=255)
                        tCATTACCAAGGCGACTATCATTATCAAATTCAtt         >  1:8471578/1‑35 (MQ=255)
                        tCATTACCAAGGCGACTATCATTATCAAATTCAtt         >  1:7631901/1‑35 (MQ=255)
                        tCATTACCAAGGCGACTATCATTATCAAATTCAtt         >  1:6336216/1‑35 (MQ=255)
                        tCATTACCAAGGCGACTATCATTATCAAATTCAtt         <  1:985198/35‑1 (MQ=255)
                        tCATTACCAAGGCGACTATCATTATCAAATTCAtt         <  1:2982995/35‑1 (MQ=255)
                        tCATTACCAAGGCGACTATCATTATCAAATTCAtt         >  1:2485719/1‑35 (MQ=255)
                        tCATTACCAAGGCGACTATCATTATCAAATTCAtt         >  1:2240972/1‑35 (MQ=255)
                          aTTACCAAGGCGACTATCATTATCAAATTCATTAt       >  1:10508485/1‑35 (MQ=255)
                           ttACCAAGGCGACTATCATTATCAAATTCATTATc      <  1:6458308/35‑1 (MQ=255)
                           ttACCAAGGCGACTATCATTATCAAATTCATTATc      >  1:8269818/1‑35 (MQ=255)
                            tcccAAGGCGACTATCATTATCAAATTCATTATCa     <  1:10795207/33‑1 (MQ=255)
                            tACCAAGGCGACTATCATTATCAAATTCATTATCa     <  1:5817584/35‑1 (MQ=255)
                            tACCAAGGCGACTATCATTATCAAATTCATTATCa     >  1:20496067/1‑35 (MQ=255)
                            tACCAAGGCGACTATCATTATCAAATTCATTATCa     <  1:11037981/35‑1 (MQ=255)
                            tACCAAGGCGACTATCATTATCAAATTCATTATCa     <  1:16645595/35‑1 (MQ=255)
                            tACCAAGGCGACTATCATTATCAAATTCATTATCa     >  1:152213/1‑35 (MQ=255)
                             aCCAAGGCGACTATCATTATCAAATTCATTATCAg    <  1:10116899/35‑1 (MQ=255)
                             aCCAAGGCGACTATCATTATCAAATTCATTATCAg    >  1:10696051/1‑35 (MQ=255)
                             aCCAAGGCGACTATCATTATCAAATTCATTATCAg    >  1:12708747/1‑35 (MQ=255)
                             aCCAAGGCGACTATCATTATCAAATTCATTATCAg    <  1:18516096/35‑1 (MQ=255)
                             aCCAAGGCGACTATCATTATCAAATTCATTATCAg    <  1:20196642/35‑1 (MQ=255)
                              ccAAGGCGACTATCATTATCAAATTCATTATCAgg   <  1:8071630/35‑1 (MQ=255)
                              ccAAGGCGACTATCATTATCAAATTCATTATCAgg   <  1:14039419/35‑1 (MQ=255)
                              ccAAGGCGACTATCATTATCAAATTCATTATCAgg   <  1:17056320/35‑1 (MQ=255)
                               cAAGGCGACTATCATTATCAAATTCATTATCAGGt  >  1:17419568/1‑35 (MQ=255)
                               cAAGGCGACTATCATTATCAAATTCATTATCAGGt  >  1:5631936/1‑35 (MQ=255)
                               cAAGGCGACTATCATTATCAAATTCATTATCAGGt  <  1:6057365/35‑1 (MQ=255)
                               |                                  
TAAAACACTATCAATAAGTTGGAGTCATTACCAAGGCGACTATCATTATCAAATTCATTATCAGGT  >  REL606/1323457‑1323522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.