New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 640120 = | 107 (1.040) | 10 (0.100) | 3/46 | NT | 11.1% | intergenic (+38/+17) | cspE/ccrB | cold shock protein E/camphor resistance protein CrcB |
? | REL606 | 2388696 = | 58 (0.590) | coding (457/810 nt) | yfcA | conserved inner membrane protein |
Only 100 of 240 total aligned reads displayed.
ACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGC > REL606/640086‑640154 | ttacccttcgcgttaatagccggtggctgcgtcgg < 1:18332797‑M1/1‑1 (MQ=255) ttacccttcgcgttaatagccggtggctgcgtcgg < 1:14191187‑M1/1‑1 (MQ=255) cgaggcggcggcaaacatatgcggatattTTAGCg < 1:5835279‑M1/6‑1 (MQ=255) cgaggcggcggcaaacatatgcggatattTCAGCg > 1:3799593‑M1/30‑35 (MQ=255) cgaggcggcggcaaacatatgcggatattTCAGCg > 1:16343230‑M1/30‑35 (MQ=255) cgaggcggcggcaaacatatgcggatattTCAGCg > 1:7177549‑M1/30‑35 (MQ=255) aCGTCAGCAAGAATTCAAAACCCGCTTAATCAGCg > 1:17210688/1‑35 (MQ=255) aCGTCAGCAAGAATTCAAAACCCGCTTAATCAGCg > 1:12224899/1‑35 (MQ=255) aCGTCAGCAAGAATTCAAAACCCGCTTAATCAGCg > 1:8489718/1‑35 (MQ=255) tacccttcgcgttaatagccggtggctgcggcggg < 1:260464‑M1/2‑1 (MQ=255) gaggcggcggcaaacatatgcggatattTCAGCgg > 1:17040267‑M1/29‑35 (MQ=255) gaggcggcggcaaacatatgcggatattTCAGCgg > 1:5156752‑M1/29‑35 (MQ=255) gaggcggcggcaaacatatgcggatattTCAACgg < 1:14931991‑M1/7‑1 (MQ=255) cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg > 1:9491945/1‑35 (MQ=255) cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg > 1:5979251/1‑35 (MQ=255) cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg < 1:11360605/35‑1 (MQ=255) cGTCAGCAAGAATTCAAAACCAGCTTAATCAGCgg < 1:16011018/35‑1 (MQ=255) gTCAGCAAGAATTCAAAACCCGCTTAATCAGCggg > 1:6767447/1‑35 (MQ=255) acccttcgcgttaatagccggtggctgcgtcgggg < 1:10151763‑M1/3‑1 (MQ=255) tCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt < 1:16295675/35‑1 (MQ=255) tCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt > 1:15795723/1‑35 (MQ=255) tCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt < 1:5557492/35‑1 (MQ=255) tCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt < 1:9369182/35‑1 (MQ=255) cccttcgcgttaatagccggtggctgcgtcggggg < 1:12867182‑M1/4‑2 (MQ=255) cccttcgcgttaatagccggtggctgcgtcgGGGt < 1:17102213‑M1/4‑1 (MQ=255) cAGCAAGAATTCAAAACCCGCTTAATCAGCGTGtt > 1:247349/1‑35 (MQ=255) cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtt > 1:4015802/1‑35 (MQ=255) cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtt < 1:13102871/35‑1 (MQ=255) aGCAAGAATTCAAAACCCGCTTAATCAGCGGGttt > 1:15655581/1‑35 (MQ=255) aGCAAGAATTCAAAACCCGCTTAATCAGCGGGttt > 1:17968084/1‑35 (MQ=255) aGCAAGAATTCAAAACCAGCTTAATCAGCGGGttt < 1:9474020/35‑1 (MQ=255) ttcgcgttaatagccggtggctgcgtcgGGGtttt < 1:17624291‑M1/7‑1 (MQ=255) ggcggcaaacatatgcggatattTTAGCGGGtttt < 1:17338986‑M1/12‑1 (MQ=255) gCAAGAATTCAAAACCCGCTTAATCAGCGGGtttt < 1:2031126/35‑1 (MQ=255) ctaaGAATTCAAAACCCGCTTAATCAGCGGGtttt < 1:12147515/33‑1 (MQ=255) gcggcaaacatatgcggatattTCAGCGGGttttt < 1:4296574‑M1/13‑1 (MQ=255) cAAGAATTCAAAACCCGCTTAATCAGCGGGttttt > 1:19690618/1‑35 (MQ=255) cAAGAATTCAAAACCCGCTTAATCAGCGGGttttt > 1:19470248/1‑35 (MQ=255) cggcaaacatatgcggatattTCAGCGGGtttttt < 1:10609030‑M1/14‑1 (MQ=255) cggcaaacatatgcggatattTCAGCGGGtttttt < 1:20088637‑M1/14‑1 (MQ=255) aaGAATTCAAAACCCGCTTAATCAGCGGGtttttt > 1:16422051/1‑35 (MQ=255) aaGAATTCAAAACCCGCTTAATCAGCGGGtttttt < 1:15245764/35‑1 (MQ=255) ggcaaacatatgcggatattTCAGCGGGttttttt < 1:12025664‑M1/15‑1 (MQ=255) gcaaacatatgcggatattTCAGCGGGtttttttt < 1:5658159‑M1/16‑1 (MQ=255) gcaaacatatgcggatattTCAGCGGGgttttttt < 1:18978217‑M1/16‑1 (MQ=255) gAATTCAAAACCCGCTTAATCAGCGGGtttttttt < 1:4263052/35‑1 (MQ=255) gAATTCAAAACCCGCTTAATCAGCGGGtttttttt < 1:9191565/35‑1 (MQ=255) gAATTCAAAACCCGCTTAATCAGCGGGtttttttt > 1:9907626/1‑35 (MQ=255) gAATTCAAAACCCGCTTAATCAGCGGGtttttttt < 1:10113080/35‑1 (MQ=255) gAATTCAAAACCCGCTTAATCAGCGGGtttttctt > 1:1360201/1‑35 (MQ=255) cgttaatagccggtggctgcgtcgGGGtttttttt < 1:7304020‑M1/11‑1 (MQ=255) cgttaatagccggtggctgcgtcgGGGtttttttt < 1:1520549‑M1/11‑1 (MQ=255) gttaatagccggtggctgcgtcgGGgttttttttg < 1:11913648‑M1/12‑2 (MQ=255) aaTTCAAAACCCGCTTAATCAGCGGGttttttttt > 1:19895322/1‑35 (MQ=255) aaTTCAAAACCCGCTTAATCAGCGGGttttttttt > 1:5897836/1‑35 (MQ=255) ttaatagccggtggctgcgtcgGGGTTTTTTTTTg < 1:5023736‑M1/13‑1 (MQ=255) aaacatatgcggatattTCAGCGGttttttttttc < 1:16724227‑M1/18‑2 (MQ=255) aTTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTg < 1:12231868/35‑1 (MQ=255) ttCAAAACCCGCTTAATCAGCGGGTTTTTTTTTgg < 1:16639035/35‑1 (MQ=255) aacatatgcggatattTCAGCgggttttttttatc < 1:15676456‑M1/19‑4 (MQ=255) aacatatgcggatattTCAGCGggtttttttttcc < 1:16074179‑M1/19‑3 (MQ=255) tCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGt > 1:19837705/1‑35 (MQ=255) cAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTc < 1:4760348/35‑1 (MQ=255) tagccggtggctgcgtcgGGGTTTTTTTTTggttt < 1:4555264‑M1/17‑3 (MQ=255) aaaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCt > 1:8035204/1‑35 (MQ=255) aaaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCt < 1:18437000/35‑1 (MQ=255) aaaaCCCGCTTAATCAGAGGGTTTTTTTTTGGTCt < 1:7730201/35‑1 (MQ=255) aaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCtt > 1:3089471/1‑35 (MQ=255) aaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCtt > 1:13765424/1‑35 (MQ=255) aaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCttt < 1:901301/35‑1 (MQ=255) aaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCttt < 1:5196765/35‑1 (MQ=255) aaCCCGCTTAATCAGCGGG‑TTTTTTTTGGTCTTTa < 1:12696475/35‑1 (MQ=38) aCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTa > 1:11043868/1‑35 (MQ=255) aCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTa < 1:8309499/35‑1 (MQ=255) aCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTa < 1:18717358/35‑1 (MQ=255) cccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAg > 1:18881042/1‑35 (MQ=255) ccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgt < 1:17693314/35‑1 (MQ=255) ccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgt < 1:2103051/35‑1 (MQ=255) cGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgtg > 1:7532465/1‑35 (MQ=255) cTTAATCAGCGGGTTTTTTTTTGGTCTTTAGtgtg < 1:20340953/35‑1 (MQ=255) cTTAATCAGCGGGTTTTTTTTTGGTCTTTAGtgtg > 1:8179095/1‑35 (MQ=255) cTTAATCAGCGGGTTTTTTTTTGGTCTTTAGtgtg < 1:20056766/35‑1 (MQ=255) cTTAATCAGCGGGTTTTTTTTTGGTCTTTAGtgtg > 1:18821938/1‑35 (MQ=255) cTTAATCAGCGGGCTTTTTTTTGGTCTTTAGtgtg > 1:977164/1‑35 (MQ=255) tAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCg < 1:10037311/35‑1 (MQ=255) tAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCg > 1:7883213/1‑35 (MQ=255) tAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCg < 1:14482637/35‑1 (MQ=255) tAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCg > 1:17295034/1‑35 (MQ=255) aaTCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCgg > 1:9878401/1‑35 (MQ=255) TCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGtt < 1:7757079‑M1/35‑1 (MQ=255) TCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGtt < 1:883206‑M1/35‑1 (MQ=255) TCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGtt < 1:18801464‑M1/35‑1 (MQ=255) CAGCTGGTTTTTTTTTGGTCTTTAGTGTGCGGTTg < 1:13502535‑M1/35‑1 (MQ=255) CAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTg < 1:6957270‑M1/35‑1 (MQ=255) aGCGGGTTCTTTTTCGGTCTTTAGTGTGCGGTTGa < 1:3135069/35‑1 (MQ=37) AGCGTGTTTTTTTTTGGTCTTTAGTGTGCGGTTGa < 1:3593459‑M1/35‑1 (MQ=255) AGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGa < 1:6472917‑M1/35‑1 (MQ=255) CGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAgg < 1:11500702‑M1/35‑1 (MQ=255) CGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAgg < 1:20175862‑M1/35‑1 (MQ=255) GGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGc > 1:18597881‑M1/1‑35 (MQ=255) | ACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGC > REL606/640086‑640154 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |