New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3894996NA (NA)5 (0.050) 5/46 NT 5.3% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 4415712 90 (0.910)coding (850/1413 nt) cycA D‑alanine/D‑serine/glycine transporter

TTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGT  >  REL606/3894967‑3895030
                             |                                  
ttAACTGTCCAACTTTTTGGGGTCAGTACAggccg                               <  1:18484193‑M2/35‑6 (MQ=255)
 tAACTGTCCAACTTTTTGGGGTCAGTACAGACgta                              >  1:5533639/1‑33 (MQ=255)
 tAACTGTCCAACTTTTTGGGGTCAGTACACACgta                              >  1:814741/1‑33 (MQ=1)
  aaCTGTCCAACTTTTTGGGGTCAGTACAaaccgag                             <  1:8112808‑M2/35‑8 (MQ=255)
  aaCTGTCCAACTTTTTGGGGTCAGTACAGACgtag                             >  1:4748640/1‑32 (MQ=255)
   aCTGTCCAACTTTTTGGGGTCAGTACAgaccgata                            >  1:11353601‑M2/1‑27 (MQ=255)
   aCTGTCCAACTTTTTGGGGTCAGTACAgaccgata                            >  1:3924763‑M2/1‑27 (MQ=255)
      gTCCAACTTTTTGGGGTCAGTACAgaccgatattt                         >  1:1041574‑M2/1‑24 (MQ=255)
            cTTTTTGGGGTCAGTACAgaccgatatttctatca                   <  1:10601260‑M2/35‑18 (MQ=255)
            cTTTTTGGGGTCAGTACAgaccgatatttctatca                   >  1:10662110‑M2/1‑18 (MQ=255)
                ttGGGGTCAGTACAgaccgatatttctatcaaccg               >  1:19164457‑M2/1‑14 (MQ=255)
                  ggggTCAGTACAgaccgatatttctatcaaccgag             <  1:19993431‑M2/35‑24 (MQ=255)
                   gggTCAGTACAgaccgatatttctatcaaccgagg            >  1:996720‑M2/1‑11 (MQ=255)
                   gggTCAGTACAgaccgatatttctatcaaccgagg            >  1:336443‑M2/1‑11 (MQ=255)
                    ggTCAGTACAgaccgatatttctatcaaccgaggc           >  1:8002557‑M2/1‑10 (MQ=255)
                     gTCAGTACAgaccgatatttctatcaaccgaggcc          <  1:10982498‑M2/35‑27 (MQ=255)
                         gTACAgaccgatatttctatcaaccgaggccaacg      <  1:6579525‑M2/35‑31 (MQ=255)
                           aCAgaccgatatttctatcaaccgaggccaacgaa    >  1:18084192‑M2/1‑3 (MQ=255)
                            cAgaccgatatttctatcaaccgaggccaacgaat   >  1:10525253‑M2/1‑2 (MQ=255)
                             agaccgatatttctatcaaccgaggccaacgaatg  <  1:20361136‑M2/35‑35 (MQ=255)
                             |                                  
TTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGT  >  REL606/3894967‑3895030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.