New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2703325 = | 45 (0.440) | 9 (0.120) | 3/36 | NT | 16.6% | coding (158/1185 nt) | ygaX | predicted transporter |
? | REL606 | = 4091236 | 57 (0.740) | coding (461/600 nt) | yiiQ | hypothetical protein |
Only 100 of 136 total aligned reads displayed.
ACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCT > REL606/4091202‑4091270 | aCCTTCTGTCTCGGTGTAATAACGTTTGTTTTTcc < 1:18508844/35‑1 (MQ=255) aCCTTCTGTCTCGGTGTAATAACGTTTGTTTTTcc < 1:3213828/35‑1 (MQ=255) ccTTCTGTCTCGGTGTAATAACGTTTGTTTTTtcc > 1:16494940/1‑35 (MQ=255) ccTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCc > 1:80193‑M2/1‑34 (MQ=255) ccTTCTGTCTCGGTGTAATAACGTTTGGTTTTCCc < 1:8689685‑M2/35‑2 (MQ=255) ccTTCTGTCTCGGGGTAATAACGTTTGGTTTTtcc > 1:1886852/1‑35 (MQ=25) cTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCcc < 1:2755148‑M2/35‑3 (MQ=255) ttCTGTCTCGGTGTAATAACGTTTGTTTTTCCccg > 1:15153154‑M2/1‑32 (MQ=255) ttCTGTCTCGGTGTAATAACGTTTGTTTTTCCccg > 1:18177123‑M2/1‑32 (MQ=255) cTGTCTCGGTGTAATAACGTTTGTTTTTCCccgcc > 1:2862860‑M2/1‑30 (MQ=255) tGTCTCGGTGTAATACCGTTTTTTTTTCCccgccg < 1:1604349/35‑1 (MQ=25) tGTCTCGGTGTAATAACGTTTGTTTTTCCccgccg > 1:8294369‑M2/1‑29 (MQ=255) tctcGGTGTAATAACGTTTGTTTTTCCCCGCCGtt > 1:3756708/1‑35 (MQ=255) ctcGGTGTAATAACGTTTGTTTTTCCCCGCCGTta > 1:9320472/1‑35 (MQ=255) ctcGGTGTAATAACGTTTGTTTTTCCCCGCCGTta > 1:4595512/1‑35 (MQ=255) ctcGGTGTAATAACGTTTGTTTTTCCCCGCCGTta > 1:19603512/1‑35 (MQ=255) cGGTGTAATAACGTTTGTTTTTCCCCGCCGTtagt > 1:10028591/1‑35 (MQ=255) cGGTGTAATAACGTTTGTTTTTCCCCGCCGTtagt > 1:18641215/1‑35 (MQ=255) cGGTGTAATAACGTTTGTTTTTCCCCGCCGTtagt > 1:20351346/1‑35 (MQ=255) cGGTGTAATAACGTTTGTTTTTCCCCGCCGTtagt > 1:12180371/1‑35 (MQ=255) cGGTGTAATAACGTTTGTTTTTCCACGCCGTtagt < 1:186418/35‑1 (MQ=255) ggTGTAATAACGTTTGTTTTTCCCCGCCGTtagta > 1:1890009/1‑35 (MQ=255) gtgtAATAACGTTTGTTTTTCCCCGCCGTtagtag > 1:8591459/1‑35 (MQ=255) gtgtAATAACGTTTGTTTTTCCCCGCCGTtagtag > 1:17205018/1‑35 (MQ=255) gtgtAATAACGTTTGTTTTTCCCCGCCGTtagaag > 1:11920648/1‑35 (MQ=255) tgtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGc > 1:2673792/1‑35 (MQ=255) tgtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGc > 1:4484030/1‑35 (MQ=255) tgtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGc > 1:9705378/1‑35 (MQ=255) tgtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGc > 1:13797264/1‑35 (MQ=255) tgtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGc > 1:14198642/1‑35 (MQ=255) tgtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGc > 1:14716611/1‑35 (MQ=255) gtAATAACGTTTGTTTTTCCCCGCCGTtagtaggg > 1:505852/1‑33 (MQ=255) gtAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCg > 1:231426/1‑35 (MQ=255) taataaCTTTTGTTTTTCCCCGCCGTTAGTAGCGa > 1:10099578/1‑35 (MQ=255) taataaCGTTTGTTTTTCCCCGCCGTTAGTAGCGa > 1:11166394/1‑35 (MQ=255) taataaCGTTTGTTTTTCCCCGCCGTTAGTAGCGa > 1:16350298/1‑35 (MQ=255) taataaCGTTTGTTTTTCCCCGCCGTTAGTAGCGa > 1:3803977/1‑35 (MQ=255) ataaCGTTTGTTTTTCCCCGCCGTTAGTAGCGACt > 1:3437376/1‑35 (MQ=255) ataaCGTTTGTTTTTCCCCGCCGTTAGTAGCGACt > 1:1346385/1‑35 (MQ=255) aaCGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGc > 1:18101156/1‑35 (MQ=255) aaCGTTTGTTTTTCCCCGCCGTTAGTAGCGAATGc > 1:19604852/1‑35 (MQ=255) aCGTTTGTTTTTCCCCGCCGTTAGTAGCGCCTGcc > 1:4780964/1‑34 (MQ=255) aCGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCa > 1:6326829/1‑35 (MQ=255) aCGTTTGTTTTTCCCCGCCGTTAGTAGCGACCGcc > 1:18998592/1‑34 (MQ=255) aCGTTTGTTTTTCCCCGCCGTTAGCAGCGACTGCa > 1:18898643/1‑35 (MQ=255) cGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAg > 1:16013759/1‑35 (MQ=255) tttttttttTCCccgccgcgcaattgggctatgca > 1:1472507‑M2/2‑12 (MQ=255) ttttgtttCCCCCCGCCGTTAGTAGCGACTGCAGt < 1:9106012/34‑1 (MQ=37) gtttgtttTTCCCCGCCGTTAGTAGCGACTGCCGt > 1:17460722/1‑35 (MQ=255) gtttgtttTTCCCCGCCGTTAGTAGCGACTGCAGt > 1:2498263/1‑35 (MQ=255) tttgtttCCCCCCGCCGTTAGTAGCGACTGCAGtt < 1:8400951/35‑1 (MQ=37) tttttttcCCCCGCCGTTAGTAGCGACTGCAGttt < 1:10951516/32‑1 (MQ=37) ttgtttTTCCCCGCCGTTAGTAGCGACTGCCGttt > 1:1758492/1‑35 (MQ=255) ttgtttCCCCCCGCCGTTAGTAGCGACTGCAGttt < 1:20251066/35‑1 (MQ=37) ttttttcCCCCGCCGTTAGTAGCGACTGCAGtttt < 1:5887483/33‑1 (MQ=38) tgtttTTCCCCGCCGTTAGTAGCGACTGCAGtttt > 1:9468727/1‑35 (MQ=255) tgtttTTCCCCGCCGTTAGTAGCGACTGCAGtttt > 1:5980087/1‑35 (MQ=255) ttttgtcCccgccgcgcaattgggctatgcagcag > 1:14116283‑M2/2‑8 (MQ=255) gtttTTCCCCGCCGTTAGTAGCGACTGGAGttttt > 1:13476897/1‑35 (MQ=255) gtttTTCCCCGCCGTTAGTAGCGACTGCAGctttt > 1:2836306/1‑35 (MQ=255) tttttCCccgccgcgcaattgggctatgcagcagg > 1:8486668‑M2/1‑7 (MQ=255) tttttCCCCGCCGTTAGTAGCGAATGCAGttttac > 1:11396859/1‑33 (MQ=38) ttttcCCCCGCCGTTAGTAGCGACTGCAGtttttt < 1:11473202/35‑1 (MQ=255) ttttcCCCCGCCGTTAGTAGCGACTGCAGtttttt < 1:17575396/35‑1 (MQ=255) tttctCCccgccgcgcaattgggctatgcagcagg > 1:16149385‑M2/1‑7 (MQ=255) ttttCCCCGCCGTTAGTAGCGACTGCAGttttttt > 1:13199331/1‑34 (MQ=255) ttttCCCCGCCGTTAGTAGCGACTGCAGTTTTTTc > 1:8936190/1‑35 (MQ=255) ttgtCCccgccgcgcaattgggctatgcagcaggt > 1:6527301‑M2/1‑6 (MQ=255) tttCCccgccgcgcaattgggctatgcagcaggtc > 1:6892417‑M2/1‑5 (MQ=255) tttCCCCGCCGTTAGTAGCGACTGCAGCTTTTTCt > 1:189246/1‑35 (MQ=255) ttcccccGCCGTTAGTAGCGACTGCAGTTTTTTCt < 1:13358025/32‑1 (MQ=255) tccccccGCCGTTAGTAGCGACTGCAGTTTTTTCt < 1:9145269/32‑1 (MQ=255) tccccccGCCGTTAGTAGCGACTGCAGTTTTTTCt < 1:10570553/32‑1 (MQ=255) tccccccGCCGTTAGTAGCGACTGCAGTTTTTTCt < 1:6852495/32‑1 (MQ=255) ttCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTg > 1:2596872/1‑35 (MQ=255) gtcCccgccgcgcaattgggctatgcagcaggtct > 1:11067706‑M2/2‑4 (MQ=255) ctgcccgccgcgcaattgggctatgcagcaggtct > 1:7675640‑M2/4‑4 (MQ=255) ctcCccgccgcgcaattgggctatgcagcaggtct > 1:417878‑M2/2‑4 (MQ=255) ctcCccgccgcgcaattgggctatgcagcaggtct > 1:4416694‑M2/2‑4 (MQ=255) ccccccGCCGTTAGTAGCGACTGCAGTTTTTTCTg < 1:9002661/33‑1 (MQ=255) ccccccGCCGTTAGTAGCGACTGCAGTTTTTTCTg < 1:1856163/33‑1 (MQ=255) tCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTgg > 1:3833205/1‑35 (MQ=255) cccccGCCGTTAGTAGCGACTGCAGTTTTTTCTgg < 1:1737804/34‑1 (MQ=255) cccccGCCGTTAGTAGCGACTGCAGTTTTTTCTgg < 1:14241487/34‑1 (MQ=255) cccccGCCGTTAGTAGCGACTGCAGTTTTTTCTgg < 1:12681414/34‑1 (MQ=255) cccccGCCGTTAGTAGCGACTGCAGTTTTTTCTgg < 1:11942089/34‑1 (MQ=255) cccccGCCGTTAGTAGCGACTGCAGTTTTTTCTgg < 1:3618959/34‑1 (MQ=255) ccccgccgcgcaattgggctatgcagcaggtctgc > 1:14896042‑M2/1‑2 (MQ=255) ccccgccgcgcaattgggctatgcagaaggtctgc > 1:13756392‑M2/1‑2 (MQ=255) ccccGCCGTTAGTAGCGACTGCAGTTTTTTCTGGc < 1:4654443/35‑1 (MQ=255) ccccGCCGTTAGTAGCGACTGCAGTTTTTTCTGGc > 1:4267684/1‑35 (MQ=255) ccccGCCGTTAGTAGCGACTGCAGTTTTTTCTGGc > 1:16568832/1‑35 (MQ=255) cccgccgcgcaattgggctatgcagcaggtctgct > 1:7457816‑M2/1‑1 (MQ=255) cccgccgcgcaattgggctatgcagcaggtctgct > 1:15341698‑M2/1‑1 (MQ=255) cccgccgcgcaattgggctatgcagcaggtctgct > 1:11415634‑M2/1‑1 (MQ=255) cccgccgcgcaattgggctatgcagcaggtctgct > 1:3575016‑M2/1‑1 (MQ=255) cccGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCt > 1:963076/1‑35 (MQ=255) cccGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCt > 1:20165788/1‑35 (MQ=255) cccGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCt < 1:14289840/35‑1 (MQ=255) cccGCCGTTAGTAGCGACTGCAGGTTTTTCTGGCt > 1:1948807/1‑35 (MQ=255) | ACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCT > REL606/4091202‑4091270 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |