New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 738279 | 23 (0.220) | 14 (0.230) | 3/28 | NT | 31.3% | coding (1582/1767 nt) | sdhA | succinate dehydrogenase flavoprotein subunit |
? | REL606 | = 3686151 | 48 (0.800) | coding (411/741 nt) | yiaT | hypothetical protein |
Only 100 of 129 total aligned reads displayed.
TCTGGAACTGGATAACCTGATGGAAACGGCGTATGCAACGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/738236‑738279 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacggctgGGTGGGGGAGCTATCGGTATTCCACAAAATGCAG < REL606/3686151‑3686118 TCTGGAACTGGATAACCTGATGGAAACGGCGTATG > 1:18684876/1‑35 TCTGGAACTGGATAACCTGATGGAAACGGCGTATG < 1:4272242/35‑1 TCTGGAACTGGATAACCTGATGGAAACGGCGTATG < 1:7995712/35‑1 TCTGGAACTGGATAACCTGATGGAAACGGCGTATG < 1:20045083/35‑1 CTGGAACTGGATAACCTGATGGAAGCGGCGTATGC < 1:16347321/35‑1 CTGGAACTGGATAACCTGATGGAAACGGCGTATGC > 1:906845/1‑35 CTGGAACTGGATAACCTGATGGAAACGGCGTATGC < 1:6305565/35‑1 CTGGAACTGGATAACCTGATGGAAACGGCGTATGC > 1:2697492/1‑35 CTGGAACTGGATAACCTGATGGAAACGGCGTATGC > 1:8091327/1‑35 CTGGAACTGGATAACCTGATGGAAACGGCGTATGC < 1:20301115/35‑1 CTGGAACTGGATAACCTGATGGAAACGGCGTATGC > 1:17783427/1‑35 TGGAACTGGATAACCTGATGGAAACGGCGTATGCA < 1:7121301/35‑1 TGGAACTGGATAACCTGATGGAAACGGCGTATGCA > 1:7505602/1‑35 TGGAACTGGATAACCTGATGGAAACGGCGTATGCA < 1:12856100/35‑1 GGAACTGGATAACCTGATGGAAACGGCGTATGCAA > 1:5369132/1‑35 GGAACTGGATAACCTGATGGAAACGGCGTATGCAA > 1:13063864/1‑35 GGAACTGGATAACCTGATGGAAACGGCGTATGCAA > 1:19537060/1‑35 GGAACTGGATAACCTGATGGAAACGGCGTATGCAA > 1:8372968/1‑35 GAACTGGATAACCTGATGGAAACGGCGTATGCAAC > 1:17310566/1‑35 GAACTGGATAACCTGATGGAAACGGCGTATGCAAC > 1:1172907/1‑35 GAACTGGATAACCTGATGGAAACGGCGTATGCAAC < 1:11522027/35‑1 GAACTGGATAACCTGATGGAAACGGCGTATGCAAC < 1:4978097/35‑1 GAACTGGATAACCTGATGGAAACGGCGTATGCAAC > 1:1886786/1‑35 GAACTGGATAACCTGATGGAAACGGCGTATGCAAC > 1:18838757/1‑35 GAACTGGATAACCTGATGGAAACGGCGTATGCAAC < 1:5689968/35‑1 AACTGGATAACCTGATGGAAACGGCGTATGCAACG < 1:14160939/35‑1 ACTGGATAACCTGATGGAAACGGCGTATGCAACGG > 1:13965280/1‑35 ACTGGATAACCTGATGGAAACGGCGTATGCAACGG > 1:3320611/1‑35 ACTGGATAACCTGATGGAAACGGCGTATGCAACGG < 1:3044789/35‑1 ACTGGATAACCTGATGGAAACGGCGTATGCAACGG > 1:1037805/1‑35 CTGGATAACCTGATGGAAACGGCGTATGCAACGGC > 1:3436607/1‑35 CTGGATAACCTGATGGAAACGGCGTATGCAACGGC > 1:1552232/1‑35 CTGGATAACCTGATGGAAACGGCGTATGCAACGGC < 1:13975150/35‑1 CTGGATAACCTGATGGAAACGGCGTATGCAACGGC < 1:13732494/35‑1 gGGATAACCTGATGGAAACGGCGTATGCAACGGCT < 1:7469267/34‑1 TGGATAACCTGATGGAAACGGCGTATGCAACGGCT < 1:5759080/35‑1 TGGATAACCTGATGGAAACGGCGTATGCAACGGCT > 1:11132658/1‑35 TGGATAACCTGATGGAAACGGCGTATGCAACGGCT > 1:9574704/1‑35 GATAACCTGATGGAAACGGCGTATGCAACGGCTGG > 1:7015642/1‑35 ATAACCTGATGGAAACGGCGTATGCAACGGCTGGG > 1:15132670/1‑35 ATAACCTGATGGAAACGGCGTATGCAACGGCTGGG > 1:7711143/1‑35 ATAACCTGATGGAAACGGCGTATGCAACGGCTGGG > 1:8459912/1‑35 TAACCTGATGGAAACGGCGTATGCAACGGCTGGGg > 1:20549116/1‑34 TAACCTGATGGAAACGGCGTATGCAACGGCTGGGg > 1:18353451/1‑34 TAACCTGATGGAAACGGCGTATGCAACGGCTGGGg > 1:8587025/1‑34 AACCTGATGGAAACGGCGTATGCAACGGCTGGGgg > 1:5314132/1‑33 AACCTGATGGAAACGGCGTATGCAACGGCTGGGgg > 1:14845854/1‑33 AACCTGATGGAAACGGCGTATGCAACGGCTGGGgg > 1:13481049/1‑33 ACCTGATGGAAACGGCGTATGCAACGGCTGGGggt > 1:19847067/1‑32 ACCTGATGGAAACGGCGTATGCAACGGCTGGGGGG > 1:13464865/1‑35 ACCTGATGGAAACGGCGTATGCAACGGCTGGGGGG > 1:12917685/1‑35 ACCTGATGGAAACGGCGTATGCAACGGCTGGGGGG > 1:7764397/1‑35 ACCTGATGGAAACGGCGTATGCAACGGCTGGGGGG > 1:20189968/1‑35 CCTGATGGAAACGGCGTATGCAACGGCTGGGGGGG > 1:6558491/1‑35 CCTGATGGAAACGGCGTATGCAACGGCTGGGGGGG > 1:12125571/1‑35 CCTGATGGAAACGGCGTATGCAACGGCTGGGGGGG > 1:10584170/1‑35 CCTGATGGAAACGGCGTATGCAACGGCTGGGGGGG > 1:10006171/1‑35 CCTGATGGAAACGGCGTATGCAACGGCTGGGGGGG > 1:20097752/1‑35 CTGATGGAAACGGCGTATGCAACGGCTGGGGGGGG > 1:12276588/1‑35 CTGATGGAAACGGCGTATGCAACGGCTGGGGGGGG > 1:14818217/1‑35 CTGATGGAAACGGCGTATGCAACGGCTGGGGGGGG > 1:14944317/1‑35 TGATGGAAACGGCGTATGCAACGGCTGGGGGGGGG > 1:17895188/1‑35 TGATGGAAACGGCGTATGCAACGGCTGGGGGGGGG > 1:7092237/1‑35 TGATGGAAACGGCGTATGCAACGGCTGGGGGGGGG > 1:5052974/1‑35 GATGGAAACGGCGTATGCAACGGCTGGGGGGGGGg > 1:10007689/1‑34 GCAACGGCTGGGTGGGGGAGCTATCGGTATTCCAC < 1:1821544/35‑1 GCAACCGCTGGGTGGGGGAGCTATCGGTATTCCAC < 1:2545726/35‑1 AACGGCTGGGTGGGGGAGCTATCGGTATTCCACAA < 1:12533285/35‑1 ACGGCTGGGTGGGGGAGCTATCGGTATTCCACAAA < 1:19052157/35‑1 ACGGCTGGGTGGGGGAGCTATCGGTATTCCACAAA < 1:11868994/35‑1 ACGGCTGGGTGGGGGAGCTATCGGTATTCCACAAA < 1:15424540/35‑1 ACGGCTGGGTGGGGGAGCTATAGGTATTCCACAAA < 1:785341/35‑1 CGGCTGGGTGGGGGAGCTATCGGTATTCCACAAAA < 1:9747988/35‑1 CGGCTGGGGGGGGGAGCTATCGGTATTCCACAAAA > 1:18567096/1‑35 GGCTGGGTGGGGGAGCTATCGGTATTCCACAAAAT > 1:5536708/1‑35 GGCTGGGTGGGGGAGCTATCGGTATTCCACAAAAT < 1:15606344/35‑1 GGCTGGGTGGGGGAGCTATCGGTATTCCACAAAAT < 1:2389011/35‑1 GGCTGGGTGGGGGAGCTATCGGTATTCCACAAAAT < 1:14715631/35‑1 GGCTGGGTGGGGGAGCTATCGGTATTCCACAAAAT < 1:12643955/35‑1 GGCTGGGTGGGGGAGCTATCGGGATTCCACAAAAT > 1:2887404/1‑35 GCTGGGTGGGGGAGCTATCGGTATTCCACAAAATG < 1:14931183/35‑1 GCTGGGTGGGGGAGCTATCGGTATTCCACAAAATG < 1:9119499/35‑1 GCTGGGTGGGGGAGCTATCGGTATTCCACAAAATG > 1:6690039/1‑35 GCTGGGTGGGGGAGCTATCGGTATTCCACAAAATG < 1:3286444/35‑1 tTGGGTGGGGGAGCTATCGGTATTCCACAAAATGC < 1:5690885/34‑1 CTGGGTGGGGGAGCTATGGGTATTCCACAAAATGC > 1:16654990/1‑35 CTGGGTGGGGGAGCTATCGGTATTCCACAAAATGC < 1:10957298/35‑1 CTGGGTGGGGGAGCTATCGGTATTCCACAAAATGC < 1:15936037/35‑1 CTGGGTGGGGGAGCTATCGGTATTCCACAAAATGC < 1:19370106/35‑1 TGGGTTGGGGAGCTATCGGTATTCCACAAAATGCA > 1:11538173/1‑35 TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA < 1:4535986/35‑1 TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA > 1:14267212/1‑35 TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA < 1:4661692/35‑1 TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA < 1:11429928/35‑1 TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA < 1:15989903/35‑1 TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA > 1:9132011/1‑35 TGGGTGGGGGAGCTATCGGTATTCCACAAAATGCA > 1:9488132/1‑35 GGGTGGGGGAGCTATCGGTATTCCACAAAATGCAG < 1:7449033/35‑1 GGGTGGGGGAGCTATCGGTATTCCACAAAATGCAG < 1:2788312/35‑1 GGGTGGGGGAGCTATCGGTATTCCACAAAATGCAG < 1:18796831/35‑1 TCTGGAACTGGATAACCTGATGGAAACGGCGTATGCAACGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/738236‑738279 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacggctgGGTGGGGGAGCTATCGGTATTCCACAAAATGCAG < REL606/3686151‑3686118 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |