New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 65726081 (0.790)7 (0.090) 5/38 NT 8.3% coding (108/2583 nt) leuS leucyl‑tRNA synthetase
?REL606 = 1387545 90 (1.110)coding (247/966 nt) ycjG L‑Ala‑D/L‑Glu epimerase

TGTAGTCGACCAGAAGGATAGGGAAGCATAGACAGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/657222‑657260
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagGGAGAATTTTTTGCAACTCCTCCCGTGTCAGCCC  <  REL606/1387545‑1387512
                                                                         
TGTAGTCGACCAGAAGGATAGGGAAGCATAGACAG                                        >  1:7452043/1‑35
TGTAGTCGACCAGAAGGATAGGGAAGCATAGACAG                                        >  1:13540160/1‑35
TGTAGTCGACCAGAAGGATAGGGAAGCATAGACAG                                        <  1:12843282/35‑1
TGTAGTCGACCAGAAGGATAGGGAAGCATAGACAG                                        >  1:2826203/1‑35
 GTAGTCGACCAGAAGGATAGGGAAGCATAGACAGG                                       >  1:7563/1‑35
 GTAGTCGACCAGAAGGATAGGGAAGCATAGACAGG                                       <  1:16495889/35‑1
 GTAGTCGACCAGAAGGATAGGGAAGCATAGACAGG                                       <  1:5693425/35‑1
 GTAGTCGACCAGAAGGATAGGGAAGCATAGACAGG                                       <  1:1526306/35‑1
 GTAGTCGACCAGAAGGATAGGGAAGCATAGACAGG                                       <  1:16128630/35‑1
  TAGTCGACCAGAAGGATAGGGAAGCATAGACAGGC                                      <  1:9850826/35‑1
  TAGTCGACCAGAAGGATAGGGAAGCATAGACAGGC                                      <  1:7844632/35‑1
  TAGTCGACCAGAAGGATAGGGAAGCATAGACAGGC                                      >  1:11096126/1‑35
  TAGTCGACCAGAAGGATAGGGAAGCATAGACAGGC                                      >  1:1423432/1‑35
  TAGTCGACCAGAAGGATAGGGAAGCATAGACAGGC                                      >  1:14274869/1‑35
   AGTCGACCAGAAGGATAGGGAAGCATAGACAGGCA                                     <  1:1560725/35‑1
   AGTCGACCAGAAGGATAGGGAAGCATAGACAGGCA                                     >  1:9939057/1‑35
   AGTCGACCAGAAGGATAGGGAAGCATAGACAGGCA                                     <  1:18671214/35‑1
    GTCGACCAGAAGGATAGGGAAGCATAGACAGGCAG                                    <  1:3199242/35‑1
    GTCGACCAGAAGGATAGGGAAGCATAGACAGGCAG                                    <  1:14025359/35‑1
    GTCGACCAGAAGGATAGGGAAGCATAGACAGGCAG                                    >  1:2088992/1‑35
    GTCGACCAGAAGGATAGGGAAGCATAGACAGGCAG                                    <  1:11796454/35‑1
     TCGACCAGAAGGATAGGGAAGCATAGACAGGCAGG                                   >  1:6238941/1‑35
     TCGACCAGAAGGATAGGGAAGCATAGACAGGCAGG                                   >  1:4296719/1‑35
     TCGACCAGAAGGATAGGGAAGCATAGACAGGCAGG                                   >  1:11359118/1‑35
       GACCAGAAGGATAGGGAAGCATAGACAGGCAGGGg                                 >  1:11982018/1‑34
       GACCAGAAGGATAGGGAAGCATAGACAGGCAGGGA                                 >  1:9210258/1‑35
       GACCAGAAGGATAGGGAAGCATAGACAGGCAGGGA                                 >  1:20049549/1‑35
        ACCAGAAGGATAGGGAAGCATAGACAGGCAGGGga                                >  1:15024181/1‑33
        ACCAGAAGGATAGGGAAGCATAGACAGGCAGGGAt                                >  1:15649170/1‑34
        ACCAGAAGGATAGGGAAGCATAGACAGGCAGGGAt                                >  1:12121039/1‑34
         CCAGAAGGATAGGGAAGCATAGACAGGCAGGGggg                               >  1:3095037/1‑32
         CCAGAAGGATAGGGAAGCATAGACAGGCAGGGAGA                               >  1:16067298/1‑35
         CCAGAAGGATAGGGAAGCATAGACAGGCAGGGAGA                               >  1:9671164/1‑35
          CAGAAGGATAGGGAAGCATAGACAGGCAGGGAtac                              >  1:5394807/1‑32
          CAGAAGGATAGGGAAGCATAGACAGGCAGGGAAAA                              >  1:2830553/1‑35
           AGAAGGATAGGGAAGCATAGACAGGCAGGGAGAta                             >  1:17711492/1‑33
             AAGGATAGGGAAGCATAGACAGGCAGGGAGAATTT                           >  1:6709734/1‑35
              AGGATAGGGAAGCATAGACAGGCAGGGATAATTTT                          >  1:9985786/1‑35
              AGGATAGGGAAGCATAGACAGGCAGGGATAATTTT                          >  1:18904275/1‑35
               GGATAGGGAAGCATAGACAGGCAGGGAGAATTTTT                         >  1:15862310/1‑35
               GGATAGGGAAGCATAGACAGGCAGGGAAAATTTTc                         >  1:11350965/1‑34
                GATAGGGAAGCATAGACAGGCAGGGAGAATTCTTT                        >  1:596375/1‑35
                                  GGCAGGGAGAATTTTTTGCAACTCCTCCCGTGTCA      <  1:10851392/35‑1
                                  GGCAGGGAGAATTTTTTGCAACTCCTCCCGTGTCA      >  1:12315962/1‑35
                                  GGCAGGGAGAATTTTTTGCAACTCCTCCCGTGTCA      >  1:13072460/1‑35
                                  GGCAGGGAGAATTTTTTGCAACTCCTCCCGTGTCA      >  1:7656110/1‑35
                                  GGCAGGGAGAATTTTTTGCAACCCCTCCCGTGTCA      <  1:9346379/35‑1
                                   tCAGGGAGAATTTTTTGCAACTCCTCCCGTGTCAG     <  1:18775573/34‑1
                                   GCAGGGAGAATTTTTTGCAACTCCTCCCGTGTCAa     >  1:16571801/1‑34
                                   GCAGGGAGAATTTTTTGCAACTCCTCCCGTGTCAG     <  1:15005318/35‑1
                                   GCAGGGAGAATTTTTTGCAACTCCTCCCGTGTCAG     >  1:3650383/1‑35
                                   GCAGGGAGAATTTTTTGCAACTACTCCCGTGTCAG     <  1:6660800/35‑1
                                    CAGGGAGAATTTTTTGCAACTCCTCCCGTGTCAGC    >  1:13702393/1‑35
                                    CAGGGAGAATTTTTTGCAACTCCTCCCGTGTCAGC    <  1:3088808/35‑1
                                    CAGGGAGAATTTTTTGCAACTCCTCCCGTGTCAGC    >  1:12809220/1‑35
                                    CAGGGAGAATTTTTTGCAACTCCTCCCGTGTCAGC    >  1:8184974/1‑35
                                    CAGGGAGAATTTTTTGCAACTCCTCCCGTGTCAGC    >  1:9091187/1‑35
                                     AGGGGGAATTTTTTGCAACTCCTCCCGTGTCAGCC   <  1:1171998/35‑1
                                     AGGGAGAATTTTTTGCAACTCCTCCCGTGTCAGCC   <  1:20576913/35‑1
                                     AGGGAGAATTTTTTGCAACTCCTCCCGTGTCAGCC   >  1:2492756/1‑35
                                     AGGGAGAATTTTTTGCAACTCCTCCCGTGTCAGCC   <  1:1760563/35‑1
                                     AGGGAGAATTTTTTGCAACTCCTCCCGTGTCAGCC   >  1:14439455/1‑35
                                     AGGGAGAATTTTTTGCAACTCCTCCCGTGTCAGCC   >  1:15269112/1‑35
                                     AGGGAGAATTTTTTGCAACTCCTCCCGTGTCAGCC   >  1:15154243/1‑35
                                      GGGAGAATTTTTTGCAACTCCTCCCGTGTCAGCCC  >  1:8167881/1‑35
                                      GGGAGAATTTTTTGCAACTCCTCCCGTGTCAGCCC  >  1:9281291/1‑35
                                      GGGAGAATTTTTTGCAACTCCTCCCGTGTCAGCCC  <  1:15583574/35‑1
                                      GGGAGAATTTTTTGCAACTCCTCCCGTGTCAGCCC  <  1:9355773/35‑1
                                      GGGAGAATTTTTTGCAACTCCTCCCGTGTCAGCCC  <  1:15175959/35‑1
                                                                         
TGTAGTCGACCAGAAGGATAGGGAAGCATAGACAGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/657222‑657260
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagGGAGAATTTTTTGCAACTCCTCCCGTGTCAGCCC  <  REL606/1387545‑1387512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.