Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,462,320 IS150 (–) +3 bp 90.4% intergenic (‑82/‑257) mokB ← / → trg regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)66 (0.700) 36/44 NT 89.1% noncoding (1/1443 nt) IS150 repeat region
?REL606 1462320 = 7 (0.090)intergenic (‑82/‑259) mokB/trg regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor
* ? REL606 = 666130NA (NA)66 (0.640) 36/48 NT 89.2% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 1462322 7 (0.080)intergenic (‑84/‑257) mokB/trg regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor

Only 100 of 238 total aligned reads displayed.

TGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGG  >  REL606/1462286‑1462354
                                  |                                  
ccatttcatcgtccaacaaaatgggtgcagtacag                                    <  1:584777‑M2/1‑1 (MQ=255)
ccatttcatcgtccaacaaaatgggtgcagtacag                                    <  1:10345599‑M2/1‑1 (MQ=255)
ccatttcatcgtccaacaaaatgggtgcagtacag                                    >  1:19122176‑M2/35‑35 (MQ=255)
ccatttcatcgtccaacaaaatgggtgcagtacag                                    >  1:17802488‑M2/35‑35 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacagg                                   <  1:14739516‑M2/2‑1 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacagg                                   <  1:15085816‑M2/2‑1 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacagg                                   >  1:19822180‑M2/34‑35 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacagg                                   >  1:5148817‑M2/34‑35 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacagg                                   >  1:19692104‑M2/34‑35 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacagg                                   >  1:7081962‑M2/34‑35 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacagg                                   >  1:12543300‑M2/34‑35 (MQ=255)
  atttcatcgtccaacaaaatgggtgcagtacagcg                                  >  1:6035731‑M2/33‑33 (MQ=255)
  atttcatcgtccaacaaaatgggtgcagtacagcg                                  <  1:18042226‑M2/3‑3 (MQ=255)
  atttcatcgtccaacaaaatgggtgcagtacagat                                  >  1:17514467‑M2/33‑33 (MQ=255)
  atttcatcgtccaacaaaatgggtgcagtacaGGc                                  >  1:14497324‑M2/33‑35 (MQ=255)
  atttcatcgtccaacaaaatgggtgcagtacaGGc                                  >  1:526751‑M2/33‑35 (MQ=255)
  atttcatcgtccaacaaaatgggtgcagtacaGGc                                  >  1:16241921‑M2/33‑35 (MQ=255)
  aTTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGc                                  >  1:2463775/1‑35 (MQ=255)
   tttcatagtccaacaaaatgggtgcagtacaGGCa                                 <  1:13543637‑M2/4‑1 (MQ=255)
    ttcatcgtccaacaaaatgggtgcagtacaGGCAc                                <  1:2198984‑M2/5‑1 (MQ=255)
    tCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCtg                                <  1:9499400‑M2/35‑3 (MQ=255)
    tCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCtg                                <  1:14278990‑M2/35‑3 (MQ=255)
     cccGTTTAGCCTGAAAACAGAAAGTCTCAGGCAcc                               <  1:10241519/35‑1 (MQ=255)
     cccGGTTAGCCTGAAAACAGAAAGTCTCAGGCtgt                               >  1:1576143‑M2/1‑32 (MQ=255)
     cccGGTTAGCCTGAAAACAGAAAGTCTCAGGCtgt                               >  1:16783535‑M2/1‑32 (MQ=255)
     cccGGTTAGCCTGAAAACAGAAAGTCTCAGGCtgt                               <  1:3527717‑M2/35‑4 (MQ=255)
      ccGGTTAGCCTGAAAACAGAAAGTCTCAGGCtgta                              >  1:13659137‑M2/1‑31 (MQ=255)
      ccGGTTAGCCTGAAAACAGAAAGTCTCAGGCtgta                              >  1:1151050‑M2/1‑31 (MQ=255)
      catcgtccaacaaaatgggtgcagttcaGGCAccc                              <  1:6664886‑M2/7‑1 (MQ=255)
      catcgtccaacaaaatgggtgcagtacaGGCAccc                              <  1:2525105‑M2/7‑1 (MQ=255)
       atcgtcgaacaaaatgggtgcagtacaGGCACCCg                             <  1:14604274‑M2/8‑1 (MQ=255)
       atcgtccaacaaaatgggtgcagtacaGGCACCCg                             <  1:15268143‑M2/8‑1 (MQ=255)
        tcgtccaacaaaatgggtgcagtacaGGCACCCGc                            >  1:1237689‑M2/27‑35 (MQ=255)
        tcgtccaacaaaatgggtgcagtacaGGCACCCGc                            <  1:19731984‑M2/9‑1 (MQ=255)
        ggTTAGCCTGAAAACAGAAAGTCTCAGGCtgtaat                            <  1:15965247‑M2/35‑7 (MQ=255)
        ggTTAGCCTGAAAACAGAAAGTCTCAGGCtggact                            <  1:18869807‑M2/35‑7 (MQ=255)
        ggTTAGCCTGAAAACAGAAAGTCTCAGGCtggact                            <  1:2870121‑M2/35‑7 (MQ=255)
         gTTAGCCTGAAAACAGAAAGTCTCAGGCtggactg                           <  1:9088450‑M2/35‑8 (MQ=255)
         cgtccaacaaaatgggtgcagtacaGGCACCCGCa                           <  1:5047936‑M2/10‑1 (MQ=255)
          gtccaacaaaatgggtgcagtacaGGCACCCGCAg                          >  1:176300‑M2/25‑35 (MQ=255)
          gtccaacaaaatgggtgcagtacaGGCACCCGCAg                          >  1:13022892‑M2/25‑35 (MQ=255)
           tccaacaaaatgggtgcagtacaGGCACCCGCAgg                         <  1:3150201‑M2/12‑1 (MQ=255)
           tAGCCTGAAAACAGAAAGTCTCAGGCtgtactgac                         >  1:4809770‑M2/1‑26 (MQ=255)
           tAGCCTAAAAACAGAAAGTCTCAGGCtgtactgac                         >  1:512217‑M2/1‑26 (MQ=255)
            ccaacaaaatgggtgcagtacaGGCACCCGCAGGc                        >  1:11395936‑M2/23‑35 (MQ=255)
             gCCTGAAAACAGAAAGTCTCAGGCtgtactgaccc                       >  1:1582814‑M2/1‑24 (MQ=255)
             gCCTGAAAACAGAAAGTCTCAGGCtgtactgaccc                       >  1:15212178‑M2/1‑24 (MQ=255)
             caacaaaatgggtgcagtacaGGCACCCGCAGGCa                       >  1:17387310‑M2/22‑35 (MQ=255)
              ccTGAAAACAGAAAGTCTCAGGCtgtactgacccc                      <  1:7989826‑M2/35‑13 (MQ=255)
               cTGAAAACAGAAAGTCTCAGGCtgtactgacccca                     <  1:8587080‑M2/35‑14 (MQ=255)
               cTGAAAACAGAAAGTCTCAGGCtggactgacccca                     <  1:10586241‑M2/35‑14 (MQ=255)
               acaaaatgggtgcagtacaGGCACCCGCAGGCATc                     <  1:3568065‑M2/16‑1 (MQ=255)
               acaaaatgggtgcagtacaGGCACCCGCAGGCATc                     >  1:913197‑M2/20‑35 (MQ=255)
               acaaaatgggtgcagtacaGGCACCCGCAGGCATc                     <  1:2629097‑M2/16‑1 (MQ=255)
               acaaaatgggtgcagtacaGGCACCCGCAGGCATc                     >  1:17567007‑M2/20‑35 (MQ=255)
               acaaaatgggtgcagtacaGGCACCAGCAGGCATc                     <  1:20131869‑M2/16‑1 (MQ=255)
                tGAAAACAGAAAGTCTCAGGCtgtactgaccccaa                    >  1:20447827‑M2/1‑21 (MQ=255)
                caaaatgggtgcagtacaGGCACCCGCAGGCATcc                    <  1:11239397‑M2/17‑1 (MQ=255)
                 gAAAACAGAAAGTCTCAGGCtgtactgaccccaaa                   >  1:7584787‑M2/1‑20 (MQ=255)
                 gAAAACAGAAAGTCTCAGGCtgtactgaccccaaa                   <  1:4007113‑M2/35‑16 (MQ=255)
                 aaaatgggtgcagtacaGGCACCCGCAGGCATCCt                   <  1:7394245‑M2/18‑1 (MQ=255)
                 aaaatgggtgcagtacaGGCACCCGCAGGCATCCt                   <  1:4229211‑M2/18‑1 (MQ=255)
                 aaaatgggtgcagtacaGGCACCCGCAGGCATCCt                   >  1:9805231‑M2/18‑35 (MQ=255)
                 aaaatgggtgcagtacaGGCACCCGCAGGCATCCt                   >  1:11882041‑M2/18‑35 (MQ=255)
                  aaatgggtgcagtacaGGCACCCGCAGGCATCCTa                  >  1:7459830‑M2/17‑35 (MQ=255)
                   aaaCAGAAAGTCTCAGGCtgtactgaccccaaaaa                 >  1:18420636‑M2/1‑18 (MQ=255)
                   aaaCAGAAAGTCTCAGGCtgtactgaccccaaaaa                 >  1:7034549‑M2/1‑18 (MQ=255)
                   aaaCAGAAAGTCTCAGGCtgtactgaccccaaaaa                 >  1:15740983‑M2/1‑18 (MQ=255)
                    aaCAGAAAGTCTCAGGCtgtactgaccccaaaaag                >  1:4304577‑M2/1‑17 (MQ=255)
                    aaCAGAAAGTCTCAGGCtgtactgacccaaaaaag                >  1:1900911‑M2/1‑17 (MQ=255)
                     tgggtgcagtacaGGCACCCGCAGGCATCCTATGa               >  1:12744485‑M2/14‑35 (MQ=255)
                      gggtgcagtacaGGCCCCCGCAGGCATCCTATGAg              <  1:815503‑M2/23‑1 (MQ=255)
                      cAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAg              <  1:2734257/35‑1 (MQ=255)
                       ggtgcagtacaGGCACCCGCAGGCATCCTATGAgg             <  1:10038697‑M2/24‑1 (MQ=255)
                       ggtgcagtacaGGCACCCGCAGGCATCCTATGAgg             >  1:3040985‑M2/12‑35 (MQ=255)
                        gtgcagtacaGGCACCCGCAGGCATCCTATGAGGt            <  1:16600723‑M2/25‑1 (MQ=255)
                        gAAAGTCTCAGGCtgtactgaccccaaaaagttgg            >  1:18254823‑M2/1‑13 (MQ=255)
                         aaaGTCTCAGGCtgtactgaccccaaaaagttgga           >  1:1089536‑M2/1‑12 (MQ=255)
                          gcagtacaGGCACCCGCAGGCATCCTATGAGGttt          >  1:5823123‑M2/9‑35 (MQ=255)
                           aGTCTCAGGCtgtactgaccccaaaaagttggaca         <  1:19517273‑M2/35‑26 (MQ=255)
                            gTCTCAGGCtgtactgaccccaaaaagttggacag        >  1:17137129‑M2/1‑9 (MQ=255)
                            gTCTCAGGCtgtactgaccccaaaaagttggacag        >  1:4622464‑M2/1‑9 (MQ=255)
                            agtacaGGCACCCGCAGGCATCCTATGAGGTTTcc        >  1:12093406‑M2/7‑35 (MQ=255)
                             tctcAGGCtgtactgaccccaaaaagttggacagt       >  1:16114634‑M2/1‑8 (MQ=255)
                             gtacaGGCCCCCGCAGGCATCCTATGAGGTTTCCt       <  1:8354529‑M2/30‑1 (MQ=255)
                             gtacaGGCACCCGCAGGCATCCTATGAGGTTTCCt       <  1:13678876‑M2/30‑1 (MQ=255)
                             gtacaGGCACCCGCAGGCATCCTATGAGGTTTCCt       <  1:11663071‑M2/30‑1 (MQ=255)
                              tacaGGCACCCGCAGGCATCCTATGAGGTTTCCtt      <  1:10430288‑M2/31‑1 (MQ=255)
                              tacaGGCACCCGCAGGCATCCTATGAGGTTTCCtt      <  1:6308772‑M2/31‑1 (MQ=255)
                              tacaGGCACCCGCAGGCATCCTATGAGGTTTCCtt      >  1:1935356‑M2/5‑35 (MQ=255)
                              tacaGGCACCCGCAGGCATCCTATGAGGTTTCCtt      <  1:5612291‑M2/31‑1 (MQ=255)
                              ctcAGGCtgtactgaccccaaaaagttggacagtt      >  1:8950097‑M2/1‑7 (MQ=255)
                               tcAGGCtgtactgaccccaaaaagttggacagtta     >  1:8012463‑M2/1‑6 (MQ=255)
                               acaGGCACCCGCAGGCATCCTATGAGGTTTCCTTa     <  1:11935460‑M2/32‑1 (MQ=255)
                               acaGGCACCCGCAGGCATCCTATGAGGTTTCATTa     <  1:4731506‑M2/32‑1 (MQ=255)
                                caGGCACCCGCAGGCATCCTATGAGGTTTCCTTAg    <  1:17001939‑M2/33‑1 (MQ=255)
                                cAGGCtgtactgaccccaaaaagttggacagttaa    <  1:6902482‑M2/35‑31 (MQ=255)
                                 aGGCACCCGCAGGCATCCTATGAGGTTTCCTTAgg   <  1:14358239‑M2/34‑1 (MQ=255)
                                  ggCACCCGCAGGCATCCTATGAGGTTTCCTTAggg  <  1:11010610/35‑1 (MQ=255)
                                  ggCACCCGCAGGCATCCTATGAGGTTTCCTTAggg  <  1:1296318/35‑1 (MQ=255)
                                  |                                  
TGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGG  >  REL606/1462286‑1462354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.