New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 924268 =101 (0.980)7 (0.090) 3/36 NT 13.1% coding (722/1431 nt) ybjT conserved protein with NAD(P)‑binding Rossmann‑fold domain
?REL606 = 3633290 17 (0.220)coding (37/1005 nt) dppF dipeptide transporter

CCCCCTCCCCACCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/924285‑924268
‑‑‑‑‑‑‑‑‑‑‑‑ccgctgTTGCAGGCTATCGACCTGAAAAAACATTATCCGG  <  REL606/3633290‑3633257
                                                    
CCCCCCCCCCACCCGCTGTTGCAGGCTATCGACCT                   <  1:1639495/35‑1
 CCCCCCCCCACCCGCTGTTGCAGGCTATCGACCTG                  <  1:5784655/35‑1
   cccCCCCACCCGCTGTTGCAGGCTATCGACCTGAA                <  1:1138612/32‑1
    ccCCCCACCCGCTGTTGCAGGCTATCGACCTGAAA               <  1:15752898/33‑1
     ccaCCACCCGCTGTTGCAGGCTATCGACCTGAAAA              <  1:2393945/32‑1
     cCCCCACCCGCTGTTGCAGGCTATCGACCTGAAAA              <  1:5408788/34‑1
     cCCCCACCCGCTGTTGCAGGCTATCGACCTGAAAA              <  1:2718463/34‑1
      CCCCACCCGCTGTTGCAGGCTATCGACCTGAAAAA             <  1:6791967/35‑1
       CCCAGCCGCTGTTGCAGGCTATCGACCTGAAAAAA            <  1:16784976/35‑1
        CCACCCGCTGTTGCAGGCTATCGACCTGAAAAAAC           <  1:8897055/35‑1
        CCACCCGCTGTTGCAGGCTATCGACCTGAAAAAAC           <  1:13302546/35‑1
        CCACCCGCTGTTGCAGGCTATCGACCTGAAAAAAC           <  1:14879530/35‑1
        CCACCCGCTGTTGCAGGCTATCGACCTGAAAAAAC           <  1:9119237/35‑1
         CACCCGCTGTTGCAGGCTATCGACCTGAAAAAACA          <  1:8685552/35‑1
         CACCCGCTGTTGCAGGCTATCGACCTGAAAAAACA          <  1:10381634/35‑1
           ccaGCTGTTGCAGGCTATCGACCTGAAAAAACATT        <  1:8356245/32‑1
           CCCGCTGTTGCAGGCTATCGACCTGAAAAAACATT        <  1:17623720/35‑1
           CCCGCTGTTGCAGGCTATCGACCTGAAAAAACATT        <  1:10178841/35‑1
            CCGCTGTTGCAGGCTATCGACCTGAAAAAACATTA       <  1:2615792/35‑1
            CCGCTGTTGCAGGCTATCGACCTGAAAAAACATTA       <  1:13421721/35‑1
             CGCTGTTGCAGGCTATCGACCTGAAAAAACATTAT      <  1:11150619/35‑1
             CGCTGTTGCAGGCTATCGACCTGAAAAAACATTAT      <  1:6820452/35‑1
             CGCTGTTGCAGGCTATCGACCTGAAAAAACATTAT      <  1:6452355/35‑1
             CGCTGTTGCAGGCTATCGACCTGAAAAAACATTAT      <  1:5962313/35‑1
             CGCTGTTGCAGGCTATCGACCTGAAAAAACATTAT      <  1:2867186/35‑1
              GCTGTTGCAGGCTATCGACCTGAAAAAACATTATC     <  1:13923107/35‑1
              GCTGTTGCAGGCTATCGACCTGAAAAAACATTATC     <  1:12123491/35‑1
               CTGTTGCAGGCTATCGACCTGAAAAAACATTATCC    >  1:14830038/1‑35
               CTGTTGCAGGCTATCGACCTGAAAAAACATTATCC    <  1:1590037/35‑1
                TGTTGCAGGCTATCGACCTGAAAAAACATTATCCG   <  1:14798728/35‑1
                TGTTGCAGGCTATCGACCTGAAAAAACATTATCCG   <  1:13347220/35‑1
                TGTTGCAGGCTATCGACCTGAAAAAACATTATCCG   <  1:1164270/35‑1
                TGTTGCAGGCTATCGACCTGAAAAAACATTATCCG   <  1:15077800/35‑1
                 GTTGCAGGCTATCGACCTGAAAAAACATTATCCGG  <  1:6017402/35‑1
                 GTTGCAGGCTATCGACCTGAAAAAACATTATCCGG  <  1:20487184/35‑1
                 GTTGCAGGCTATCGACCTGAAAAAACATTATCCGG  <  1:1838396/35‑1
                 GTTGCAGGCTATCGACCTGAAAAAACATTATCCGG  <  1:6916132/35‑1
                 GTTGCAGGCTATCGACCTGAAAAAACATTATCCGG  <  1:7649049/35‑1
                                                    
CCCCCTCCCCACCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/924285‑924268
‑‑‑‑‑‑‑‑‑‑‑‑ccgctgTTGCAGGCTATCGACCTGAAAAAACATTATCCGG  <  REL606/3633290‑3633257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.