New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 672796 | 79 (0.770) | 10 (0.150) | 3/32 | NT | 16.4% | coding (181/1539 nt) | lnt | apolipoprotein N‑acyltransferase |
? | REL606 | 1048881 = | 49 (0.720) | intergenic (‑78/‑349) | serT/hyaA | tRNA‑Ser/hydrogenase 1, small subunit |
Only 100 of 140 total aligned reads displayed.
CTAATTTGTTTGTTTGCCTGAAAAACAGCCAAAAGTGCATTGATAGCGTGAAATAACAGCAGATTGAT > REL606/1048848‑1048915 | cTAATTTGTTTGTTTGCCTGAAAAACAGCCAAAAg > 1:7800801/1‑35 (MQ=255) tAATTTGTTTGTTTGCCTGAAAAACAGCCAAAAGt > 1:17439127/1‑35 (MQ=255) tAATTTGTTTGTTTGCCTGAAAAACAGCCAAAAGt > 1:16268694/1‑35 (MQ=255) aTTTGTTTGTTTGCCTGAAAACCAGCCAAAAGTGc > 1:57545/1‑35 (MQ=255) aTTTGTTTGTTTGCCTGAAAAACAGCCAAAAGTGc > 1:6408861/1‑35 (MQ=255) aTTTGTTTGTTTGCCTGAAAAACAGCCAAAAGTGc > 1:3345724/1‑35 (MQ=255) tttgtttgtttgCCTGAAAAACAGCCAAAAGTGCa > 1:18814306/1‑35 (MQ=255) tttgtttgtttgCCTGAAAAACAGCCAAAAGTGCa > 1:9458165/1‑35 (MQ=255) tttgtttgtttgCCTGAAAAACAGCCAAAAGTGCa > 1:7454367/1‑35 (MQ=255) tttgtttgtttgCCTGAAAAACAGCCAAAAGTGCa > 1:3038572/1‑35 (MQ=255) tttgtttgtttgCCTGAAAAACAGCCAAAAGTGCa > 1:12395943/1‑35 (MQ=255) ttgtttgtttgCCTGAAAAACAGCCAAAAGTGCAt > 1:16075800/1‑35 (MQ=255) ttgtttgtttgCCTGAAAAAAAGCCAAAAGTGCAt < 1:9582340/35‑1 (MQ=255) tgtttgtttgCCTGAAAAACAGCCAAAAGTGCAtt > 1:16995936/1‑35 (MQ=255) tgtttgtttgCCTGAAAAACAGCCAAAAGTGCAtt > 1:9063322/1‑35 (MQ=255) gtttgtttgCCTGAAAAACAGCCAAAAGTGCATTg > 1:5391463/1‑35 (MQ=255) gtttgtttgCCTGAAAAACAGCCAAAAGTGCATTg > 1:9431517/1‑35 (MQ=255) gtttgtttgCCTGAAAAACAGCCAAAAGTGCATTg > 1:17641756/1‑35 (MQ=255) tttgtttgCCTGAAAAACAGCCAAAAGTGCATTGa > 1:15117228/1‑35 (MQ=255) ttgtttgCCTGAAAAACAGCCAAAAGTGCATTGAt > 1:7778316/1‑35 (MQ=255) ttgtttgCCTGAAAAACAGCCAAAAGTGCATTGAt > 1:8241939/1‑35 (MQ=255) ttgtttgCCTGAAAAACAGCCAAAAGTGCATTGAt > 1:7967257/1‑35 (MQ=255) ttgtttgCCTGAAAAACAGCCAAAAGTGCATTGAt > 1:2932535/1‑35 (MQ=255) ttgtttgCCTGAAAAACAGCCAAAAGTGCATTGAt > 1:14764794/1‑35 (MQ=255) tgtttgCCTGAAAAACAGCCAAAAGTGCATTGATa > 1:18575341/1‑35 (MQ=255) tgtttgCCTGAAAAACAGCAAAAAGTGCATTGATa < 1:11262388/35‑1 (MQ=255) gtttgCCTGAAAAACAGCCAAAAGTGCATTGATAg > 1:11095733/1‑35 (MQ=255) gtttgCCTGAAAAACAGCCAAAAGTGCATTGATAg > 1:12901313/1‑35 (MQ=255) tttgCCTGAAAAACAGCCAAAAGTGCATTGATAGc > 1:19803903/1‑35 (MQ=255) ttgCCTGAAAAACAGCCAAAAGTGCATTGATAGCg > 1:11738219/1‑35 (MQ=255) tgCCTGAAAAACAGCCAAAAGTGCATTGATAGCGt > 1:16036069/1‑35 (MQ=255) tgCCTGAAAAACAGCCAAAAGTGCATTGATAGCGt > 1:3436379/1‑35 (MQ=255) gccaaaaccccagccaaaAGTGCATTGATAGCGTg < 1:20381842‑M2/17‑1 (MQ=255) gCCTTAAAAACAGCCAAAAGTGCATTGATAGCGTg > 1:19941706/1‑35 (MQ=255) gCCTGAAAAACAGCCAAAAGTGCATTGATAGCGTg > 1:16431930/1‑35 (MQ=255) cccaaaaccccagccaaaAGTGCATTGATAGCGTg < 1:11521607‑M2/17‑1 (MQ=255) cccaaaaccccagccaaaAGTGCATTGATAGCGTg < 1:6752924‑M2/17‑1 (MQ=255) ccaaacccccagccaaaAGTGCATTGATAGCGTGa < 1:17256024‑M2/18‑1 (MQ=255) ccaaaaccccagccaaaAGTGCATTGATAGCGTGa < 1:5492179‑M2/18‑1 (MQ=255) ccTGAAAAACAGCCAAAAGTGCATTGATAGCGTGa > 1:2362507/1‑35 (MQ=255) caaacccccagccaaaAGTGCATTGATAGCGTGaa < 1:9039360‑M2/19‑1 (MQ=255) caaaaccccagccaaaAGTGCATTGATAGCGTGaa < 1:10665819‑M2/19‑1 (MQ=255) cTGAAAAACAGCCAAAAGTGCATTGATATCGTGaa > 1:3942997/1‑35 (MQ=255) cTGAAAAACAGCCAAAAGTGCATTGATAGCGTGaa > 1:14469460/1‑35 (MQ=255) tGAAAAACAGCCAAAAGTGCATTGATAGCGTGaaa > 1:14757794/1‑35 (MQ=255) tGAAAAACAGCCAAAAGTGCATTGATAGCGTGaaa > 1:11835728/1‑35 (MQ=255) aaaaccccagccaaaAGTGCATTGATAGCGTGaaa < 1:10316748‑M2/20‑1 (MQ=255) gAAAAACAGCCAAAAGTGCATTGATAGCGTGAAAt > 1:5111806/1‑35 (MQ=255) aaaccccagccaaaAGTGCATTGATAGCGTGAAAt < 1:3704‑M2/21‑1 (MQ=255) aaccccagccaaaAGTGCATTGATAGCGTGAAATa < 1:9153490‑M2/22‑1 (MQ=255) aaaaaCAGCCAAAAGTGCATTGATAGCGTGAAATa > 1:7990491/1‑35 (MQ=255) accccagccaaaAGTGCATTGATAGCGTGAAATaa < 1:3630174‑M2/23‑1 (MQ=255) accccagccaaaAGTGCATTGATAGCGTGAAATaa < 1:20069333‑M2/23‑1 (MQ=255) tcccagccaaaAGTGCATTGATAGCGTGAAATAAc < 1:4992768‑M2/24‑1 (MQ=255) cccagccaaaAGTGCATTGATAGCGTGAAATAAca < 1:14363741‑M2/25‑1 (MQ=255) cccagccaaaAGTGCATTGATAGCGTGAAATAAca < 1:8584498‑M2/25‑1 (MQ=255) aaCAGCCAAAAGTGCATTGATAGCGTGAAATAAca > 1:1274232/1‑35 (MQ=255) aaCAGCCAAAAGTGCATTGATAGCGTGAAATAAca > 1:14522864/1‑35 (MQ=255) aaCAGCCAAAAGTGCATTGATAGCGTGAAATAAca > 1:15456093/1‑35 (MQ=255) aaCAGCCAAAAGTGCATTGATAGCGTGAAATAAca > 1:2959012/1‑35 (MQ=255) ccagccaaaAGTGCATTGATAGCGTGAAATAAcag < 1:17327128‑M2/26‑1 (MQ=255) aCAGCCAAAAGTGCATTGATAGCGTGAAATAAcag > 1:19166633/1‑35 (MQ=255) cagccgaaAGTGCATTGATAGCGTGAAATAAcagc < 1:20133‑M2/27‑1 (MQ=255) cagccaaaAGTGCATTGATAGCGTGAAATAAcagc < 1:13117187‑M2/27‑1 (MQ=255) cagccaaaAGTGCATTGATAGCGTGAAATAAcagc < 1:916990‑M2/27‑1 (MQ=255) cagccaaaAGTGCATTGATAGCGTGAAATAAcagc < 1:9327988‑M2/27‑1 (MQ=255) agccaaaAGTGCATTGATAGCGTGAAATAAcagca > 1:5040993‑M2/8‑35 (MQ=255) agccaaaAGTGCATTGATAGCGTGAAATAAcagca > 1:9773785‑M2/8‑35 (MQ=255) agccaaaAGTGCATTGATAGCGTGAAATAAcagca < 1:19392626‑M2/28‑1 (MQ=255) gccaaaAGTGCATTGATAGCGTGAAATAAcagcag < 1:4376230‑M2/29‑1 (MQ=255) gccaaaAGTGCATTGATAGCGTGAAATAAcagcag < 1:16496329‑M2/29‑1 (MQ=255) gccaaaAGTGCATTGATAGCGTGAAATAAcagcag < 1:2705613‑M2/29‑1 (MQ=255) gccaaaAGTGCATTGATAGCGTGAAATAAcagcag < 1:11090638‑M2/29‑1 (MQ=255) gccaaaAGTGCATTGATAGCGTGAAATAAcagcag > 1:1860706‑M2/7‑35 (MQ=255) gccaaaAGTGCATTGATAGCGTGAAATAAcagcag > 1:19100133‑M2/7‑35 (MQ=255) gccaaaAGTGCATTGATAGCGTGAAATAAcagcag > 1:18940060‑M2/7‑35 (MQ=255) ccaaaAGTGCATTGATAGCGTGAAATAACAGCAGa < 1:8778737‑M2/30‑1 (MQ=255) ccaaaAGTGCATTGATAGCGTGAAATAACAGCAGa > 1:17239767‑M2/6‑35 (MQ=255) ccaaaAGTGCATTGATAGCGTGAAATAACAGCAGa > 1:8562455‑M2/6‑35 (MQ=255) ccaaaAGTGCATTGATAGCGTGAAATAACAGCAGa > 1:7579899‑M2/6‑35 (MQ=255) ccaaaAGTGCATTGATAGCGTGAAATAACAGCAGa > 1:18784734‑M2/6‑35 (MQ=255) ccaaaAGTGCATTGATAGCGTGAAATAACAGCAGa < 1:7318025‑M2/30‑1 (MQ=255) aaaAGTGCATTGATAGCGTGAAATAACAGCAGAtt < 1:17512076‑M2/32‑1 (MQ=255) aaAGTGCATTGATAGCGTGAAATAACAGCAGATTg > 1:10295520‑M2/3‑35 (MQ=255) aaAGTGCATTGATAGCGTGAAATAACAGCAGATTg < 1:5274177‑M2/33‑1 (MQ=255) aaAGTGCATTGATAGCGTGAAATAACAGCAGATTg > 1:16728531‑M2/3‑35 (MQ=255) aaAGTGCATTGATAGCGTGAAATAACAGCAGATTg > 1:4652336‑M2/3‑35 (MQ=255) aaAGTGCATTGATAGCGTGAAATAACAGCAGATTg > 1:12350611‑M2/3‑35 (MQ=255) aAGTGCATTTATAGCGTGAAATAACAGCAGATTGa > 1:17419212‑M2/2‑35 (MQ=255) aAGTGCATTGATAGCGTGAAATAACAGCAGATTGa < 1:5822932‑M2/34‑1 (MQ=255) aAGTGCATTGATAGCGTGAAATAACAGCAGATTGa > 1:18230296‑M2/2‑35 (MQ=255) aAGTGCATTGATAGCGTGAAATAACAGCAGATTGa > 1:20373955‑M2/2‑35 (MQ=255) aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt > 1:10507564/1‑35 (MQ=255) aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt > 1:10273840/1‑35 (MQ=255) aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt < 1:11769368/35‑1 (MQ=255) aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt < 1:12047796/35‑1 (MQ=255) aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt < 1:18472935/35‑1 (MQ=255) aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt < 1:19309016/35‑1 (MQ=255) aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt > 1:19990654/1‑35 (MQ=255) aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt < 1:3277403/35‑1 (MQ=255) | CTAATTTGTTTGTTTGCCTGAAAAACAGCCAAAAGTGCATTGATAGCGTGAAATAACAGCAGATTGAT > REL606/1048848‑1048915 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |