New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2979870 | 135 (1.310) | 6 (0.060) | 3/44 | NT | 6.2% | coding (962/981 nt) | yggR | predicted transporter |
? | REL606 | 4245169 = | 59 (0.630) | coding (456/1080 nt) | alr | alanine racemase |
ATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2979835‑2979870 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGCCGGTGAATATCGTCAGCCATTTTGCGCGCGCG > REL606/4245169‑4245202 ATCGGGCATGGCAACGTCACAAACGCCCTTCCCCC > 1:5340597/1‑35 ATCGGGCATGGCAACGTCACAAACGCCCTTCCCCC > 1:2282509/1‑35 ATCGGGCATGGCAACGTCACAAACGCCCTTCCCCC > 1:13985486/1‑35 ATCGGGCATGGCAACGTCACAAACGCCCTTCCCCC > 1:14935536/1‑35 TCGGGCATGGCGACGTCACAAACGCCCTTCCCCCA > 1:18985409/1‑35 TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA < 1:6199437/35‑1 TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA < 1:4358524/35‑1 TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA < 1:17782010/35‑1 TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA < 1:16945498/35‑1 TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA > 1:1554551/1‑35 TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA < 1:8381385/35‑1 CCCTTCCCCCAGCCGGTGAATATCGTCAGCCATTT < 1:5592449/35‑1 CCCTTCCCCCAGCCGGTGAATATCGTCAGCCATTT < 1:16767006/35‑1 CCCGTCCCCCAGCCGGTGAATATCGTCAGCCATTT < 1:6353918/35‑1 CCTTCCCCCAGCCGGTGAATATCGTCAGCCATTTT < 1:7472216/35‑1 CCTTCCCCCAGCCGGTGAATATCGTCAGCAATTTT < 1:234016/35‑1 tcCCCCCAGCCGGTGAATATCGTCAGCCATTTTGC < 1:12286861/33‑1 TTCCCCCAGCCGGTGAATATAGTCAGCCATTTTGC < 1:11771260/35‑1 CCCCCAGCCGGTGAATATCGTCAGCCATTTTGCGC < 1:7991776/35‑1 CCCCCAGCCGGTGAATATCGTCAGCCATTTTGCGC < 1:16538202/35‑1 CCCCCAGCCGGTGAATATCGTCAGCCATTTTGCGC < 1:5913218/35‑1 CCCCAGCCGGTGAATATCGTCAGCCATTTTGCGCG < 1:11849682/35‑1 CCCAGCCGGTGAATATCGTCAGCCATTTTGCGCGC < 1:13049195/35‑1 CCCAGCCGGTGAATATCGTCAGCCATTTTGCGCGC < 1:15680501/35‑1 CCCAGCCGGTGAATATCGTCAGCCATTTTGCGCGC < 1:10529672/35‑1 CAGCCGGTGAATATCGTCAGCCATTTTTCGCGCGC > 1:877193/1‑35 CAGCCGGTGAATATCGTCAGCCATTTTTCGCGCGC > 1:2128167/1‑35 CAGCCGGTGAATATCGCCAGCCATTTTGCGCGCGC > 1:11367485/1‑35 AGCCTGTGAATATCGTCAGCCATTTTGCGCGCGCG < 1:20203347/35‑1 AGCCGGTGAATATCGTCAGCCATTTTTCGCGCGCG > 1:19913371/1‑35 AGCCGGTGAATATCGTCAGCCATTTTGCGCGCGCG > 1:6840634/1‑35 AGCCGGTGAATATCGTCAGCCATTTTGCGCGCGCG > 1:14208843/1‑35 ATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2979835‑2979870 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGCCGGTGAATATCGTCAGCCATTTTGCGCGCGCG > REL606/4245169‑4245202 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |