New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 594300 =32 (0.310)8 (0.110) 5/34 NT 13.7% coding (902/2241 nt) fepA iron‑enterobactin outer membrane transporter
?REL606 = 3534924 78 (1.070)coding (8/1497 nt) ftsY fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein

AATACCAACTCCGATTCCTATACCCGCTCGAAATATGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/594340‑594300
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcgaAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGG  <  REL606/3534924‑3534891
                                                                           
AATACCAACTCCGATTCCTATACCCGCTCGAAATA                                          >  1:4993016/1‑35
AATACCAACTCCGATTCCTATACCCGCTCGAAATA                                          >  1:2617048/1‑35
AATACCAACTCCGATTCCTATACCCGCTCGAAATA                                          >  1:2410493/1‑35
AATACCAACTCCGATTCCTATACCCGCTCGAAATA                                          <  1:2055068/35‑1
AATACCAACTCCGATTCCTATACCCGCTCGAAATA                                          <  1:11363502/35‑1
AATACCAACTCCAATTCCTATACCCGCTCGAAATA                                          <  1:3152874/35‑1
 ATACCAACTCCGATTCCTATACCCGCTCGAAATAT                                         <  1:11701989/35‑1
 ATACCAACTCCGATTCCTATACCCGCTCGAAATAT                                         >  1:7632905/1‑35
  TACCAACTCCTATTCCTATACCCGCTCGAAATATG                                        >  1:5938234/1‑35
  TACCAACTCCGATTCCTATACCCGCTCGAAATATG                                        >  1:4048541/1‑35
  TACCAACTCCGATTCCTATACCCGCTCGAAATATG                                        >  1:10875869/1‑35
  TACCAACTCCGATTCCTATACCCGCTCGAAATATG                                        <  1:20217610/35‑1
   ACCAACTCCGATTCCTATACCCGCTCGAAATATGG                                       >  1:5219821/1‑35
   ACCAACTCCGATTCCTATACCCGCTCGAAATATGG                                       >  1:4007786/1‑35
    CCAACTCCGATTCCTATACCCGCTCGAAATATGGC                                      <  1:10850951/35‑1
    CCAACTCCGATTCCTATACCCGCTCGAAATATGGC                                      <  1:12231739/35‑1
    CCAACTCCGATTCCTATACCCGCTCGAAATATGGC                                      >  1:7983204/1‑35
    CCAACTCCGATTCCTATACCCGCTCGAAATATGGC                                      >  1:13872665/1‑35
    CCAACGCCGATTCCTATACCCGCTCGAAATATGGC                                      <  1:1984026/35‑1
     CAACTCCGATTCCTATACCCGCTCGAAATATGGCG                                     >  1:5954762/1‑35
     CAACTCCGATTCCTATACCCGCTCGAAATATGGCG                                     >  1:8337960/1‑35
     CAACTCCGATTCCTATACCCGCTCGAAATATGGCG                                     >  1:10999437/1‑35
     CAACTCCGATTCCTATACCCGCTCGAAATATGGCG                                     <  1:9609494/35‑1
      cACTCCGATTCCTATACCCGCTCGAAATATGGCGA                                    >  1:12518768/2‑35
      AACTCCGATTCCTATACCCTCTCGAAATATGGCGA                                    >  1:8869761/1‑35
      AACTCCGATTCCTATACCCGCTCGAAATATGGCGA                                    <  1:15393489/35‑1
      AACTCCGATTCCTATACCCGCTCGAAATATGGCGA                                    <  1:11593321/35‑1
      AACTCCGATTCCTATACCCGCTCGAAATATGGCGA                                    >  1:7338924/1‑35
      AACTCCGATTCCTATACCCGCTCGAAATATGGCGA                                    <  1:1137864/35‑1
      AACTCCGATTCCTATACCCGCTCGAAATATGGCGA                                    >  1:18881853/1‑35
      AACTCCGATTCCTATACCCGCTCGAAATATGGCGA                                    <  1:10005560/35‑1
         TCCGATTCCTATACCCGCTCGAAATATGGCGAAAa                                 >  1:20128146/1‑34
         TCCGATTCCTATACCCGCTCGAAATATGGCGAAAa                                 >  1:12294432/1‑34
         TCCGATTCCTATACCCGCTCGAAATATGGCGAAAa                                 >  1:19328951/1‑34
         TCCGATTCCTATACCCGCTCGAAATATGGCGAAAa                                 >  1:16758680/1‑34
          CCGATTCCTATACCCGCTCGAAATATGGCGAAAaa                                >  1:1750447/1‑33
          CCGATTCCTATACCCGCTCGAAATATGGCGAAAaa                                >  1:16297001/1‑33
           CGATTCCTATACCCGCTCGAAATATGGCGAAAAAA                               >  1:5445805/1‑35
           CGATTCCTATACCCGCTCGAAATATGGCGAAAAAA                               >  1:2727194/1‑35
            GATTCCTATACCCGCTCGAAATATGGCGAAAAAAA                              >  1:6569074/1‑35
            GATTCCTATACCCGCTCGAAATATGGCGAAAAAAA                              >  1:10483898/1‑35
            GATTCCTATACCCGCTCGAAATATGGCGAAAAAAA                              >  1:14904000/1‑35
            GATTCCTATACCCGCTCGAAATATGGCGAAAAAAA                              >  1:13309026/1‑35
              TTCCTATACCCGCTCGAAATATGGCGAAAAAAAAA                            >  1:11204005/1‑35
               TCCTATACCCGCTCGAAATATGGCGAAAAAAAAAA                           >  1:11228723/1‑35
                CCTATACCCGCTCGAAATATGGCGAAAAAAAAAAA                          >  1:3879818/1‑35
                 CTATACCCGCTCGAAATATGGCGAAAAAAAAAAAA                         >  1:9648395/1‑35
                                  ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTTCTG        >  1:3796459/1‑35
                                  ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTTCTG        >  1:16502806/1‑35
                                  ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTG        <  1:3206793/35‑1
                                  ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTG        <  1:15097099/35‑1
                                  ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTG        <  1:814584/35‑1
                                  ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTG        <  1:15297502/35‑1
                                  ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTG        <  1:19270934/35‑1
                                  ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTG        >  1:1855095/1‑35
                                   TGGCGAAAGAAAAAAAACGTGGCTTTTTTTTCTGG       >  1:17912394/1‑35
                                   TGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGa       >  1:20203490/1‑34
                                   TGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGG       >  1:10293839/1‑35
                                   TGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGG       <  1:3468440/35‑1
                                   TGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGG       <  1:6389033/35‑1
                                   TGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGG       >  1:6090654/1‑35
                                   TGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGG       >  1:4613755/1‑35
                                   TGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGG       <  1:19379184/35‑1
                                    GGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTcgg      >  1:19972854/1‑32
                                    GGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGC      <  1:9882835/35‑1
                                    GGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGC      >  1:10645185/1‑35
                                    GGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGC      <  1:1461539/35‑1
                                    GGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGC      >  1:15118720/1‑35
                                    GGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGC      <  1:15415941/35‑1
                                    GGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGC      >  1:18011728/1‑35
                                    GGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGC      >  1:5518081/1‑35
                                    GGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGC      >  1:3603600/1‑35
                                     GCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCT     <  1:19505578/35‑1
                                     GCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCT     >  1:14275192/1‑35
                                     GCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCT     >  1:3759764/1‑35
                                     GCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCT     <  1:1509726/35‑1
                                     GCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCT     <  1:3774837/35‑1
                                      CGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTG    >  1:5119356/1‑35
                                      CGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTG    <  1:4512341/35‑1
                                      CGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTG    >  1:9659227/1‑35
                                      CGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTG    <  1:16355989/35‑1
                                       GAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGG   <  1:3480114/35‑1
                                       GAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGG   <  1:3715045/35‑1
                                       GAAAGAAAAAAAACGTGGCTTTTTTTCCCGGCTGG   >  1:16208497/1‑35
                                        AAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGG  <  1:25913/35‑1
                                        AAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGG  <  1:8623773/35‑1
                                        AAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGG  >  1:6715112/1‑35
                                        AAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGG  <  1:20319642/35‑1
                                        AAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGG  <  1:4191817/35‑1
                                        AAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGG  >  1:1799850/1‑35
                                        AAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGG  >  1:4397905/1‑35
                                                                           
AATACCAACTCCGATTCCTATACCCGCTCGAAATATGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/594340‑594300
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcgaAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGG  <  REL606/3534924‑3534891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.