New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 76423 =43 (0.420)4 (0.050) 3/36 NT 7.3% coding (903/1611 nt) thiP thiamin ABC transporter membrane protein
?REL606 = 3891004 69 (0.900)coding (451/1497 nt) yieN fused predicted transcriptional regulator: sigma54 activator protein/conserved protein

CATTTGCGACACGGTGTTAATTGTGCTGGCGCTGCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/76462‑76423
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctgGTGGCGGCCTCCAACGAGCTGCCGGAAGCAGACA  <  REL606/3891004‑3890971
                                                                          
CATTTGCGACACGGTGTTAATTGTGCTGGCGCTGC                                         <  1:18914987/35‑1
CATTTGCGACACGGTGTTAATTGTGCTGGCGCTGC                                         >  1:15951402/1‑35
CATTTGCGACACGGTGTTAATTGTGCTGGCGCTGC                                         <  1:7590314/35‑1
CATTTGCGACACGGTGTTAATTGTGCTGGCGCTGC                                         >  1:7671599/1‑35
CATTTGCGACACGGTGTTAATTGTGCTGGCGCTGC                                         <  1:11009523/35‑1
 ATTTGCGACACGGTGTTAATTGTGCTGGCGCTGCT                                        >  1:19465715/1‑35
 ATTTGCGACACGGTGTTAATTGTGCTGGCGCTGCT                                        <  1:16789002/35‑1
 ATTTGCGACACGGTGTTAATTGTGCTGGCGCTGCT                                        <  1:7323752/35‑1
 ATTTGCGACACGGTGTTAATTGTGCTGGCGCTGCT                                        <  1:16625113/35‑1
 ATTTGCGACACGGTGTTAATTGTGCTGGCGCTGCT                                        <  1:11839992/35‑1
 ATTTGCGACACGGTGCTAATTGTGCTGGCGCTGCT                                        <  1:20256364/35‑1
  TTTGCGACACGGTGTTAATTGTGCTGGCGCTGCTG                                       <  1:4827397/35‑1
  TTTGCGACACGGTGTTAATTGTGCTGGCGCTGCTG                                       <  1:485164/35‑1
  TTTGCGACACGGTGTTAATTGTGCTGGCGCTGCTG                                       >  1:5061456/1‑35
  TTTGCGACACGGTGTTAATTGTGCTGGCGCTGCTG                                       >  1:16042235/1‑35
  TTTGCGACACGGTGTTAATTGTGCTGGCGCTGCTG                                       <  1:6897726/35‑1
  TTTGCGACACGGTGTTAATTGTGCTGGCGCTGCTG                                       <  1:9851931/35‑1
  TTTGCGACACGGTGTTAATTGTGCTGGCGCTGCTG                                       >  1:7733075/1‑35
   TTGCGGCACGGTGTTAATTGTGCTGGCGCTGCTGC                                      <  1:19352989/35‑1
   TTGCGACACGGTGTTAATTGTGCTGGCGCTGCTGC                                      <  1:422323/35‑1
   TTGCGACACGGTGTTAATTGTGCTGGCGCTGCTGC                                      >  1:7574305/1‑35
   TTGCGACACGGTGTTAATTGTGCTGGCGCTGCTGC                                      >  1:9916275/1‑35
   TTGCGACACGGTGTTAATTGTGCTGGCGCTGCTGC                                      >  1:19084260/1‑35
   TTGCGACACGGTGTTAATTGTGCTGGCGCTGCTGC                                      >  1:16208044/1‑35
    TGCGACACGGTGTTAATTGTGCTGGCGCTGCTGCT                                     <  1:7256508/35‑1
    TGCGACACGGTGTTAATTGTGCTGGCGCTGCTGCT                                     >  1:8106688/1‑35
    TGCGACACGGTGTTAATTGTGCTGGCGCTGCTGCT                                     <  1:9571102/35‑1
     GCGACACGGTGTTAATTGTGCTGGCGCTGCTGCTG                                    <  1:19825378/35‑1
      CGACACGGTGTTAATTGTGCTGGCGCTGCTGCTGG                                   >  1:18123404/1‑35
      CGACACGGTGTTAATTGTGCTGGCGCTGCTGCCGG                                   >  1:733036/1‑35
        ACACGGTGTTAATTGTGCTGGCGCTGCTGCTTGTt                                 >  1:5034668/1‑34
        ACACGGTGTTAATTGTGCTGGCGCTGCTGCTGGTG                                 >  1:5268836/1‑35
         CACGGTGTTAATTGTGCTGGCGCTGCTGCTGGTGc                                >  1:16563706/1‑34
          ACGGTGTTAATTGTGCTGGCGCTGCTGCTGGTtgt                               >  1:17756461/1‑32
          ACGGTGTTAATTGTGCTGGCGCTGCTGCTGGTtgt                               >  1:5493073/1‑32
          ACGGTGTTAATTGTGCTGGCGCTGCTGCTGGTtct                               >  1:5382211/1‑32
          ACGGTGTTAATTGTGCTGGCGCTGCTGCTGGTGct                               >  1:9234295/1‑33
           CGGTGTTAATTGTGCTGGCGCTGCTGCTGGTGTCG                              >  1:15622777/1‑35
             GTGTTAATTGTGCTGGCGCTGCTGCTGGTGGCGGC                            >  1:17507027/1‑35
             GTGTTAATTGTGCTGGCGCTGCTGCTGGTGGCGGC                            >  1:8725569/1‑35
              TGTTAATTGTGCTGGCGCTGCTGCTGGTGGCGGCC                           >  1:5013909/1‑35
                                  CTGCTGGTGGCGGCCTCCAACGAGCTGCCCGAAGa       >  1:950249/1‑34
                                  CTGCTGGGGGCGGCCTCCAACGAGCTGCCGGAAGC       <  1:19045485/35‑1
                                   TGCTGGTGGCGGCCTCCAACGAGCTGCCGGAAGCA      >  1:17392045/1‑35
                                   TGCTGGTGGCGGCCTCCAACGAGCTGCCGGAAGCA      <  1:13071199/35‑1
                                    GCTGGTGGCGGCCTCCAACGAGCTGCCGGAAGCcg     >  1:7673318/1‑33
                                    GCTGGTGGCGGCCTCCAACGAGCTGCCGGAAGCAG     <  1:15326957/35‑1
                                    GCTGGTGGCGGCCTCCAACGAGCTGCCGGAAGCAG     <  1:14503025/35‑1
                                    GCTGGTGGCGGCCTCCAACGAGCTGCCGGAAGCAG     <  1:14474871/35‑1
                                    GCTGGTGGCGGCCTCCAACGAGCTGCCGGAAGCAG     <  1:8258067/35‑1
                                    GCTGGTGGCGGCCTCCAACGAGCTGCCGGAAGCAG     >  1:9009567/1‑35
                                    GCTGGTGGCGGCCTCCAACGAGATGCCGGAAGCAG     <  1:274902/35‑1
                                     CTGGTGGCGGCCTCCAACGAGCTGCCGGAAGCAGA    >  1:15556762/1‑35
                                     CTGGTGGCGGCCTCCAACGAGCTGCCGGAAGCAGA    >  1:16650960/1‑35
                                      TGGTGGCGGCCTCCAACGAGCTGCCGGAAGCAGAC   >  1:8736859/1‑35
                                      TGGTGGCGGCCTCCAACGAGCTGCCGGAAGCAGAC   >  1:13135895/1‑35
                                       GGTGGCGGCCTCCAACGAGCTGCCGGAAGCAGACA  >  1:13734953/1‑35
                                       GGTGGCGGCCTCCAACGAGCTGCCGGAAGCAGACA  <  1:16165298/35‑1
                                                                          
CATTTGCGACACGGTGTTAATTGTGCTGGCGCTGCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/76462‑76423
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctgGTGGCGGCCTCCAACGAGCTGCCGGAAGCAGACA  <  REL606/3891004‑3890971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.