New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1691508 =100 (0.970)7 (0.100) 3/34 NT 8.7% intergenic (+43/‑63) ydgR/gst putative tripeptide transporter permease/glutathionine S‑transferase
?REL606 = 1806767 76 (1.040)coding (233/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

TTTAAAGTATGGTAGTGCGTTGCTGAACAAAAAAAAAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1691548‑1691508
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagccgAATTAACCGCGATTATTGCCAGAGAAACGGGTAA  <  REL606/1806767‑1806734
                                                                           
TTTAAAGTATGGTAGTGCGTTGCTGAACAAAAAAA                                          >  1:9806654/1‑35
TTTAAAGTATGGTAGTGCGTTGCTGAACAAAAAAA                                          <  1:11727083/35‑1
TTTAAAGTATGGTAGTGCGTTGCTGAACAAAAAAA                                          <  1:1953079/35‑1
 TTAAAGTATGGTAGTGCGTTGCTGAACAAAAAAAA                                         <  1:8880190/35‑1
 TTAAAGTATGGTAGTGCGTTGCTGAACAAAAAAAA                                         >  1:8177832/1‑35
 TTAAAGTATGGTAGTGCGTTGCTGAACAAAAAAAA                                         >  1:7375054/1‑35
  TAAAGTATGGTAGTGCGTTGCTGAACAAAAAAAAA                                        <  1:356317/35‑1
  TAAAGTATGGTAGTGCGTTGCTGAACAAAAAAAAA                                        <  1:20593829/35‑1
  TAAAGTATGGTAGTGCGTTGCTGAACAAAAAAAAA                                        >  1:13428211/1‑35
  TAAAGTATGGTAGGGCGTTGCTGAACAAAAAAAAA                                        >  1:20119092/1‑35
   AAAGTATGGTAGTGCGTTGCTGAACAAAAAAAAAG                                       >  1:13679638/1‑35
   AAAGTATGGTAGTGCGTTGCTGAACAAAAAAAAAG                                       <  1:14231964/35‑1
   AAAGTATGGTAGTGCGTTGCTGAACAAAAAAAAAG                                       <  1:12084257/35‑1
   AAAGTATGGTAGTGCGTTGCTGAACAAAAAAAAAG                                       <  1:6620940/35‑1
   AAAGTATGGTAGTGCGTTGCTGAACAAAAAAAAAG                                       <  1:20337149/35‑1
    AAGTATGGTAGTGCGTTGCTGAACAAAAAAAAAGC                                      >  1:16320989/1‑35
     AGTATGGTAGTGCGTTGCTGAACAAAAAAAAAGtc                                     <  1:18733484/35‑3
     AGTATGGTAGTGCGTTGCTGAACAAAAAAAAAGCC                                     >  1:18188522/1‑35
     AGTATGGTAGTGCGTTGCTGAACAAAAAAAAAGCC                                     <  1:14628923/35‑1
     AGTATGGTAGTGCGTTGCTGAACAAAAAAAAAGCC                                     <  1:17002942/35‑1
      GTATGGTAGTGCGTTGCTGAACAAAAAAAAAGTCG                                    >  1:18682827/1‑35
      GTATGGTAGTGCGTTGCTGAACAAAAAAAAAGCCc                                    >  1:5085591/1‑34
       TATGGTAGTGCGTTGCTGAACAAAAAAAAAGCagc                                   <  1:5399452/35‑4
                      CTGAAAAAAAAAAAAGCCGAATTAACCGCGATTAT                    <  1:19487564/35‑1
                       gGAAAAAAAAAAAAGCCGAATTAACCGCGATTATT                   <  1:16092123/34‑1
                       TGAAAAAAAAAAAAGCCGAATTAACCGCGATTATT                   <  1:17298197/35‑1
                       TGAAAAAAAAAAAAGCCGAATTAACCGCGATTATT                   <  1:8309273/35‑1
                        GAAAAAAAAAAAAGCCGAATTAACCGCGATTATTG                  <  1:16108775/35‑1
                        GAAAAAAAAAAAAGCCGAATTAACCGCGATTATTG                  <  1:400980/35‑1
                          aaAAAAAAAAAGCCGAATTAACCGCGATTATTGCC                <  1:8636261/33‑1
                            gAAAAAAAAGCCGAATTAACCGCGATTATTGCCAG              <  1:2201791/34‑1
                            agAAAAAAAGCCGAATTAACCGCGATTATTGCCAG              <  1:464778/33‑1
                             AAAAAAAAGCCGAATTAACCGCGATTATTGCCAGA             <  1:14616768/35‑1
                              AAAAAAAGCCGAATTAACCGCGATTATTGCCAGAG            <  1:2182189/35‑1
                               AAAAAAGCCGAATTAACCGCGATTATTGCCAGAGA           <  1:5205646/35‑1
                               AAAAAAGCCGAATTAACCGCGATTATTGCCAGAGA           <  1:10465239/35‑1
                                AAAAAGCCGAATTAACCGCGATTATTGCCAGAGAA          <  1:6579571/35‑1
                                AAAAAGCCGAATTAACCGCGATTATTGCCAGAGAA          <  1:20147565/35‑1
                                AAAAAGCCGAATTAACAGCGATTATTGCCAGAGAA          <  1:4040357/35‑1
                                 AAAAGCCGAATTAACCGCGATTATTGCCAGAGAAA         <  1:7826416/35‑1
                                 AAAAGCCGAATTAACCGCGATTATTGCCAGAGAAA         <  1:4052707/35‑1
                                  AAAGCCGAATTACCCGCGATTATTGCCAGAGAAAC        <  1:15061296/35‑1
                                  AAAGCCGAATTAACCGCGATTATTGCCAGAGAAAC        <  1:9691574/35‑1
                                  AAAGCCGAATTAACCGCGATTATTGCCAGAGAAAC        <  1:6155334/35‑1
                                   AAGCCGAATTAACCGCGATTATTGCCAGAGAAACG       <  1:6838462/35‑1
                                   AAGCCGAATTAACCGCGATTATTGCCAGAGAAACG       >  1:15238557/1‑35
                                   AAGCCGAATTAACCGCGATTATTGCCAGAGAAACG       <  1:2924524/35‑1
                                   AAGCCGAATTAACCGCGATTATTGCCAGAGAAACG       >  1:13019330/1‑35
                                   AAGCCGAATTAACCGCGATTATTGCCAGAGAAACG       <  1:19339706/35‑1
                                   AAGCCGAATTAACCGCGATTATTGCCAGAGAAACG       <  1:10048728/35‑1
                                   AAGCCAAATTAACCGCGATTATTGCCAGAGAAACG       <  1:13597224/35‑1
                                    AGCCGAATTAACCGCGATTATTGCCAGAGAAACGG      >  1:855929/1‑35
                                    AGCCGAATTAACCGCGATTATTGCCAGAGAAACGG      >  1:15141085/1‑35
                                    AGCCGAATTAACCGCGATTATTGCCAGAGAAACGG      >  1:16204962/1‑35
                                     GCCGAATTACCCGCGATTATTGCCAGAGAAACGGG     <  1:10167719/35‑1
                                     GCCGAATTAACCGCGATTATTGCCAGAGAAACGGG     >  1:3806001/1‑35
                                     GCCGAATTAACCGCGATTATTGCCAGAGAAACGGG     <  1:937810/35‑1
                                     GCCGAATTAACCGCGATTATTGCCAGAGAAACGGG     >  1:15101682/1‑35
                                      CCGAATTAACCGCGATTATTGCCAGAGAAACGGGT    <  1:14368586/35‑1
                                      CCGAATTAACCGCGATTATTGCCAGAGAAACGGGT    <  1:9540083/35‑1
                                       CGAATTAACCGCGATTATTGCCAGAGAAACGGGTA   >  1:15231149/1‑35
                                       CGAATTAACAGCGATTATTGCCAGAGAAACGGGTA   <  1:13171683/35‑1
                                        GAATTAACCGCGATTATTGCCAGAGAAACGGGTAA  >  1:617327/1‑35
                                        GAATTAACCGCGATTATTGCCAGAGAAACGGGTAA  >  1:4508582/1‑35
                                        GAATTAACCGCGATTATTGCCAGAGAAACGGGTAA  >  1:4355284/1‑35
                                        GAATTAACCGCGATTATTGCCAGAGAAACGGGTAA  >  1:3615639/1‑35
                                        GAATTAACCGCGATTATTGCCAGAGAAACGGGTAA  >  1:12812304/1‑35
                                        GAATTAACCGCGATTATTGCCAGAGAAACGGGTAA  <  1:2464727/35‑1
                                        GAATTAACCGCGATTATTGCCAGAGAAACGGGTAA  <  1:15320219/35‑1
                                        GAATTAACCGCGATTATTGCCAGAGAAACGGGTAA  >  1:15967554/1‑35
                                        GAATTAACCGCGATTATTGCCAGAGAAACGGGTAA  <  1:16917910/35‑1
                                        GAATTAACCGCGATTATTGCCAGAGAAACGGGAAA  >  1:20014041/1‑35
                                                                           
TTTAAAGTATGGTAGTGCGTTGCTGAACAAAAAAAAAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1691548‑1691508
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagccgAATTAACCGCGATTATTGCCAGAGAAACGGGTAA  <  REL606/1806767‑1806734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.