Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,665,639 | A→T | 92.4% | L100Q (CTG→CAG) | rplS ← | 50S ribosomal protein L19 |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,665,639 | 0 | A→T | 92.4% | 18.5 ‑1.2 ‑0.0 | 132 | L100Q (CTG→CAG) | rplS | 50S ribosomal protein L19 |
Reads supporting (aligned to +/- strand): new base (71/51): ref base (8/2): total (79/53) | ||||||||||
Fisher's exact test strand distribution p-value = 3.14e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.67e-01 |
Only 100 of 134 total aligned reads displayed.
TTTGATACGAGCAGCCTTACCAGTACGCTCACGCAGGTAGTACAGTTTAGCTTTACGAACAGCACCAC > REL606/2665605‑2665672 | tttGATACGAGCAGCCTTACCAGTACGCTCACGCa > 1:5515046/1‑35 (MQ=255) tGATACGAGCAGCCTTACCAGTACGCTCACGCTgg > 1:13936008/1‑35 (MQ=255) tGATACGAGCAGCCTTACCAGTACGCTCACGCTgg > 1:275721/1‑35 (MQ=255) tGATACGAGCAGCCTTACCAGTACGCTCACGCTgg > 1:7186687/1‑35 (MQ=255) tGATACGAGCAGCCTTACCAGTACGCTCACGCTgg < 1:7319290/35‑1 (MQ=255) tGATACGACCAGCCTTACCAGTACGCTCACGCTgg < 1:4665737/35‑1 (MQ=37) gATACGAGCAGCCTTACCAGTACGCTCACGCTGgt < 1:3792791/35‑1 (MQ=255) gATACGAGCAGCCTTACCAGTACGCTCACGCTGgt > 1:5473548/1‑35 (MQ=255) gATACGAGCAGCCTTACCAGTACGCTCACGCTGgt > 1:7624979/1‑35 (MQ=255) aTACGAGCAGCCTTACCAGTACGCTCACGCTGgta > 1:11776932/1‑35 (MQ=255) aTACGAGCAGCCTTACCAGTACGCTCACGCTGgta > 1:7344232/1‑35 (MQ=255) aTACGAGCAGCCTTACCAGTACGCTCACGCTGgta > 1:3116700/1‑35 (MQ=255) aTACGAGCAGCCTTACCAGTACGCTCACGCTGgta > 1:4295322/1‑35 (MQ=255) aTACGAGCAGCCTTACCAGTACGCTCACGCTGgta > 1:14113331/1‑35 (MQ=255) tACGAGCAGCCTTACCAGTACGCTCACGCTGgtag < 1:2969940/35‑1 (MQ=255) tACGAGCAGCCTTACCAGTACGCTCACGCTGgtag > 1:2035697/1‑35 (MQ=255) tACGAGCAGCCTTACCAGTACGCTCACGCAGgtag > 1:16504179/1‑35 (MQ=255) aCGAGCAGCCTTACCAGTACGCTCACGCTGgtagt > 1:20589012/1‑35 (MQ=255) aCGAGCAGCCTTACCAGTACGCTCACGCTGgtagt > 1:11387645/1‑35 (MQ=255) aCGAGCAGCCTTACCAGTACGCTCACGCTGgtagt > 1:823277/1‑35 (MQ=255) aCGAGCAGCCTTACCAGTACGCTCACGCTGgtagt > 1:8353292/1‑35 (MQ=255) aCGAGCAGCCTTACCAGTACGCTCACGCTGgtagt < 1:14713774/35‑1 (MQ=255) aCGAGCAGCCTTACCAGTACGCTCACGCTGgtagt > 1:3376153/1‑35 (MQ=255) aCGAGCAGCCTTACCAGTACGCTCACGCAGgtagt < 1:18140914/35‑1 (MQ=255) cGAGCAGCCTTACCAGTACGCTCACGCTGgtagta > 1:4709377/1‑35 (MQ=255) gAGCAGCCTTACCAGTACGCTCACTCTGGTAGTAc > 1:18977453/1‑35 (MQ=37) gAGCAGCCTTACCAGTACGCTCACGCTGGTAGTAc < 1:15042608/35‑1 (MQ=255) gAGCAGCCTTACCAGTACGCTCACGCTGGTAGTAc < 1:6427937/35‑1 (MQ=255) gAGCAGCCTTACCAGTACGCTCACGCTGGTAGTAc < 1:11410283/35‑1 (MQ=255) agcagcCTTACCAGTACGCTCACGCTGGTAGTACa > 1:12173694/1‑35 (MQ=255) agcagcCTTACCAGTACGCTCACGCTGGTAGTACa > 1:2531972/1‑35 (MQ=255) agcagcCTTACCAGTACGCTCACGCTGGTAGTACa < 1:10352679/35‑1 (MQ=255) agcagcCTTACCAGTACGCTCACGCTGGTAGTACa < 1:10004302/35‑1 (MQ=255) gcagcCTTACCAGTACGCTCACGCTGGTAGTACAg > 1:4032236/1‑35 (MQ=255) gcagcCTTACCAGTACGCTCACGCTGGTAGTACAg > 1:10383004/1‑35 (MQ=255) cagcCTTACCAGTACGCTCACGCTGGTAGTACAgc < 1:14702703/35‑2 (MQ=255) cagcCTTACCAGTACGCTCACGCTGGTAGTACAGt > 1:4741505/1‑35 (MQ=255) cagcCTTACCAGTACGCTCACGCTGGTAGTACAGt < 1:16820350/35‑1 (MQ=255) agcCTTACCAGTACGCTCACGCTGGTAGTACAGtt > 1:1947993/1‑35 (MQ=255) agcCTTACCAGTACGCTCACGCTGGTAGTACAGtt < 1:19206820/35‑1 (MQ=255) agcCTTACCAGTACGCTCACGCTGGTAGTACAGtt < 1:16950681/35‑1 (MQ=255) agcCTTACCAGTACGCTCACGCTGGTAGGACCGtt > 1:6007680/1‑35 (MQ=25) agcCTTACCAGTACGCTCACGCAGGTAGTACAGtt > 1:12473550/1‑35 (MQ=255) gcCTTACCAGTACGCTCACGCTGGTAGTACAGttt > 1:15220580/1‑35 (MQ=255) gcCTTACCAGTACGCTCACGCTGGTAGTACAGttt > 1:19071216/1‑35 (MQ=255) ccTTACCAGTACGCTCACGCTGGTAGTACAGTTTa > 1:11870616/1‑35 (MQ=255) cTTACCAGTACGCTCACGCTGGTAGTACAGTTTAg < 1:3317085/35‑1 (MQ=255) cTTACCAGTACGCTCACGCTGGTAGTACAGTTTAg > 1:12703485/1‑35 (MQ=255) cTTACCAGTACGCTCACGCTGGTAGTACAGTTTAg > 1:16210276/1‑35 (MQ=255) cTTACCAGTACGCTCACGCTGGTAGTACAGTTTAg > 1:2073263/1‑35 (MQ=255) cTTACCAGTACGCTCACGCTGGTAGTACAGTTTAg < 1:6858286/35‑1 (MQ=255) cTTACCAGTACGCTCACGCTGGTAGTACAGTTTAg > 1:9761550/1‑35 (MQ=255) ttACCAGTACGCTCACGCTGGTAGTACAGTTTAGc < 1:18601326/35‑1 (MQ=255) ttACCAGTACGCTCACGCTGGTAGTACAGTTTAGc < 1:6571734/35‑1 (MQ=255) ttACCAGTACGCTCACGCTGGTAGTACAGTTTAGc > 1:19178026/1‑35 (MQ=255) tACCAGTACGCTCACGCTGGTAGTACAGTTTAGCt < 1:11279379/35‑1 (MQ=255) tACCAGTACGCTCACGCTGGTAGTACAGTTTAGCt < 1:12327200/35‑1 (MQ=255) tACCAGTACGCTCACGCTGGTAGTACAGTTTAGCt < 1:20322399/35‑1 (MQ=255) aCCAGTACGCTCACGCTGGTAGTACAGTTTAGCtt < 1:16210867/35‑1 (MQ=255) aCCAGTACGCTCACGCTGGTAGTACAGTTTAGCtt < 1:7016237/35‑1 (MQ=255) aCCAGTACGCTCACGCTGGTAGTACAGTTTAGCtt > 1:5880398/1‑35 (MQ=255) aCCAGTACGATCACGCTGGTAGTACAGTTTAGCtt < 1:10769071/35‑1 (MQ=37) ccAGTACGCTCACGCTGGTAGTACAGTTTAGCttt > 1:6088406/1‑35 (MQ=255) ccAGTACGCTCACGCTGGTAGTACAGGTTAGCttt > 1:19763183/1‑35 (MQ=37) ccAGTACGCTCACGCTGGTAGGACAGTTTAGCttt > 1:17888678/1‑35 (MQ=37) ccAGTACGCTCACGCTCGTAGTACAGTTTAGCttt > 1:3300996/1‑35 (MQ=37) cAGTACGCTCACGCTGGTAGTACAGTTTAGCTTTa > 1:13263099/1‑35 (MQ=255) cAGTACGCTCACGCTGGTAGTACAGTTTAGCTTTa < 1:13017303/35‑1 (MQ=255) cAGTACGCTCACGCTGGTAGTACAGTTTAGCTTTa < 1:3080493/35‑1 (MQ=255) attACGCTCACGCTGGTAGTACAGTTTAGCTTTAc > 1:7824470/3‑35 (MQ=38) aGTACGCTCACGCTGGTAGTACAGTTTAGCTTTAc > 1:5458709/1‑35 (MQ=255) aGTACGCTCACGCTGGTAGTACAGTTTAGCTTTAc < 1:17810108/35‑1 (MQ=255) aGTACGCTCACGCTGGTAGTACAGTTTAGCTTTAc < 1:2186630/35‑1 (MQ=255) gTACGCTCACGCTTGTAGTACAGTTTAGCTTTACg > 1:139228/1‑35 (MQ=38) gTACGCTCACGCTGGTAGTACAGTTTAGCTTTACg < 1:3213128/35‑1 (MQ=255) gTACGCTCACGCTGGTAGTACAGTTTAGCTTTACg > 1:13628570/1‑35 (MQ=255) tACGCTCACGCTGGTAGTACAGTTTAGCTTTACGa > 1:17246029/1‑35 (MQ=255) tACGCTCACGCAGGTAGTACAGTTTAGCTTTACGa > 1:11023201/1‑35 (MQ=255) aCGCTCACGCTGGTAGTACAGTTTAGCTTTACGaa < 1:8486635/35‑1 (MQ=255) aCGCTCACGCTGGTAGTACAGTTTACCTTTACGaa > 1:16466273/1‑35 (MQ=37) gCTCACGCTGGTAGTACAGTTTAGCTTTACGAACa < 1:9656235/35‑1 (MQ=255) gCTCACGCTGGTAGTACAGTTTAGCTTTACGAACa > 1:14334172/1‑35 (MQ=255) gCTCACGCTGGTAGTACAGTTTAGCTTTACGAACa > 1:18870179/1‑35 (MQ=255) gCTCACGCTGGTAGTACAGTTTAGCTTTACGAACa > 1:6613687/1‑35 (MQ=255) gCTCACGCTGGTAGTACAGTTTAGCTTTACGAACa > 1:16218465/1‑35 (MQ=255) gCTCACGCTGGTAGGACAGTTTAGCTTTACGAACa > 1:3117236/1‑35 (MQ=37) cTCACGCTGGTAGTACAGTTTAGCTTTACGAACAg < 1:1198612/35‑1 (MQ=255) cTCACGCTGGTAGTACAGTTTAGCTTTACGAACAg > 1:7379897/1‑35 (MQ=255) cTCACGCTGGTAGTACAGTTTAGCTTTACGAACAg < 1:18728168/35‑1 (MQ=255) tCACGCTGGTAGTACAGTTTAGCTTTACGAACAGc > 1:1662816/1‑35 (MQ=255) cACGCTGGTAGTACAGTTTAGCTTTACGAACAGca > 1:3193754/1‑35 (MQ=255) cACGCTGGTAGTACAGTTTAGCTTTACGAACAGca < 1:1456811/35‑1 (MQ=255) cACGCTGGTAGTACAGTTTAGCTTTACGAACAGca > 1:5037194/1‑35 (MQ=255) cACGCTGGTAGTACAGTTTAGCTTTACGAACAGca < 1:15709246/35‑1 (MQ=255) cACGCAGGTAGTACAGTTTAGCTTTACGAACAGca > 1:4733925/1‑35 (MQ=255) cGCTGGTAGTACAGTTTAGCTTTACGAACAGcacc > 1:8078493/1‑35 (MQ=255) cGCTGGTAGTACAGTTTAGCTTTACGAACAGcacc < 1:1404176/35‑1 (MQ=255) cGCAGGTAGTACAGTTTAGCTTTACGAACAGcacc > 1:2416179/1‑35 (MQ=255) cAGGTAGTACAGTTTAGCTTTACGAACANnaccan > 1:10738184/1‑35 (MQ=255) cAGGTAGTACAGTTTAGCTTTACGAACAGcaccac > 1:17503299/1‑35 (MQ=255) | TTTGATACGAGCAGCCTTACCAGTACGCTCACGCAGGTAGTACAGTTTAGCTTTACGAACAGCACCAC > REL606/2665605‑2665672 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |