New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1539621 =78 (0.760)10 (0.120) 3/38 NT 16.0% coding (51/2400 nt) dos cAMP phosphodiesterase, heme‑regulated
?REL606 = 4445223 43 (0.530)coding (715/2139 nt) nrdD anaerobic ribonucleoside triphosphate reductase

CATTTTTTTCCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1539636‑1539621
‑‑‑‑‑‑‑‑‑‑‑ccgccAGCTACAACAAACATCGCAAGACCGCAGAAGAGT  <  REL606/4445223‑4445190
                                                  
ccTTTTTTTCCCCGCCAGCTACAACAAACATCGCA                 <  1:14322535/33‑1
 gTTTTTTTCCCCGCCAGCTACAACAAACATCGCAA                <  1:10951186/34‑1
 cTTTTTTTCCCCGCCAGCTACAACAAACATCGCAA                <  1:9286767/34‑1
 cTTTTTTTCCCCGCCAGCTACAACAAACATCGCAA                <  1:17465494/34‑1
  cTTTTTCCCCCGCCAGCTACAACAAACATCGCAAG               <  1:10754952/34‑1
  TTTTTTTCCCCGCCAGCTACAACAAACATCGCAAG               <  1:2843361/35‑1
   TTTTTTCCCCGCCAGCTACAACAAACATCGCAAGA              <  1:2796183/35‑1
     ttgTCCCCGCCAGCTACAACAAACATCGCAAGACC            <  1:5036058/32‑1
     tgTTCCCCGCCAGCTACAACAAACATCGCAAGACC            <  1:1219349/33‑1
     TTTTCCCCGCCAGCTACAACAAACATCGCAAGACC            <  1:9391261/35‑1
     TTTTCCCCGCCAGCTACAACAAACATCGCAAGACC            <  1:6266175/35‑1
     TTTTCCCCGCCAGCTACAACAAACATCGCAAGACC            <  1:410494/35‑1
      TTTCCCCGCCAGCTACAACAAACATCGCAAGACCG           <  1:3719947/35‑1
      TTTCCCCGCCAGCTACAACAAACATCGCAAGACCG           <  1:19161025/35‑1
      TTTCCCCCCCAGCTACAACAAACATCGCAAGACCG           <  1:13736704/35‑1
        TCCCCGCCAGCTACAACAAACATCGCAAGACCGCA         <  1:20335024/35‑1
         CCCCCCCAGCTACAACAAACATCGCAAGACCGCAG        <  1:11706906/35‑1
          CCCGCCAGCTACAACAAACATCGCAAGACCGCAGA       <  1:16198704/35‑1
          CCCGCCAGCTACAACAAACATCGCAAGACCGCAGA       <  1:12241828/35‑1
          CCCCCCAGCTACAACAAACATCGCAAGACCGCAGA       <  1:8239174/35‑1
           caaCCAGCTACAACAAACATCGCAAGACCGCAGAA      <  1:19101916/32‑1
           CCGCCAGCTACAACAAACATCGCAAGACCGCAGAA      >  1:13077347/1‑35
           CCGCCAGCTACAACAAACATCGCAAGACCGCAGAA      >  1:7213603/1‑35
            CGCCAGCTACAACAAACATCGCAAGACCGCAGAAG     >  1:17884797/1‑35
            CGCCAGCTACAACAAACATCGCAAGACCGCAGAAG     >  1:16838807/1‑35
            CGCCAGCTACAACAAACATCGCAAGACCGCAGAAG     >  1:3948362/1‑35
             GCCAGCTACAACAAACATCGCAAGACCGCAGAAGA    >  1:8691362/1‑35
             GCCAGCTACAACAAACATCGCAAGACCGCAGAAGA    <  1:15230261/35‑1
             GCCAGCTACAACAAACATCGCAAGAACGCAGAAGA    <  1:14425745/35‑1
              CCAGCTACAACAAACATCGCAAGACCGCAGAAGAG   >  1:12931509/1‑35
              CCAGCTACAACAAACATCGCAAGACCGCAGAAGAG   >  1:11055983/1‑35
              CCAGCTACAACAAACATCGCAAGACCGCAGAAGAG   >  1:17953339/1‑35
              CCAGCTACAACAAACATCGCAAGACCGCAGAAGAG   >  1:17944585/1‑35
              CCAGCTACAACAAACATCGCAAGACCGCAGAAGAG   >  1:17013775/1‑35
               CAGCTACAACAAACATCGCAAGACCGCAGAAGAGT  <  1:3954295/35‑1
               CAGCTACAACAAACATCGCAAGACCGCAGAAGAGT  >  1:19559771/1‑35
               CAGCTACAACAAACATCGCAAGACCGCAGAAGAGT  >  1:7108504/1‑35
               CAGCTACAACAAACATCGCAAGACCGCAGAAGAGT  >  1:15745285/1‑35
               CAGCTACAACAAACATCGCAAGACAGCAGAAGAGT  <  1:19110677/35‑1
                                                  
CATTTTTTTCCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1539636‑1539621
‑‑‑‑‑‑‑‑‑‑‑ccgccAGCTACAACAAACATCGCAAGACCGCAGAAGAGT  <  REL606/4445223‑4445190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.