New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2703325 =45 (0.440)9 (0.120) 3/36 NT 16.6% coding (158/1185 nt) ygaX predicted transporter
?REL606 = 4091236 57 (0.740)coding (461/600 nt) yiiQ hypothetical protein

AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2703364‑2703325
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGAAAAACAAACGTTATTACACCGAGACAGAAGG  <  REL606/4091236‑4091203
                                                                          
AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGC                                         <  1:10842559/35‑1
AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGC                                         <  1:18635233/35‑1
AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGC                                         >  1:7394032/1‑35
AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGC                                         >  1:21251/1‑35
AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGC                                         >  1:19391953/1‑35
 GAAACAGCAGACCTGCTGCATAGCCCAATTGCGCG                                        <  1:15077122/35‑1
 GAAACAGCAGACCTGCTGCATAGCCCAATTGCGCG                                        >  1:13645163/1‑35
  AAACAGCAGACCTGCTGCATAGCCCAATTGCGCGN                                       <  1:17357548/35‑1
  AAACAGCAGACCTGCTGCATAGCCCAATTGCGCGG                                       <  1:4385732/35‑1
  AAACAGCAGACCTGCTGCATAGCCCAATTGCGCGG                                       >  1:8716262/1‑35
  AAACAGCAGACCTGCTGCATAGCCCAATTGCGCGG                                       <  1:3737733/35‑1
  AAACAGCAGACCTGCTGCATAGCCCAATTGCGCGG                                       <  1:3565814/35‑1
   AACAGCAGACCTGCTGCATAGCCCAATTGCGCGGC                                      <  1:19900430/35‑1
   AACAGCAGACCTGCTGCATAGCCCAATTGCGCGGC                                      <  1:4104184/35‑1
   AACAGCAGACCTGCTGCATAGCCCAATTGCGCGGC                                      <  1:6891735/35‑1
    ACAGCAGACCTGCTGCATAGCCCAATTGCGCGGCG                                     <  1:20236886/35‑1
     CAGCAGACCTGCTGCATAGCCCAATTGCNNGGCGN                                    >  1:17529239/1‑35
     CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG                                    >  1:19784084/1‑35
     CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG                                    >  1:19537623/1‑35
     CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG                                    >  1:5422512/1‑35
     CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG                                    <  1:16328165/35‑1
     CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG                                    >  1:11517563/1‑35
     CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG                                    >  1:8379071/1‑35
     CAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG                                    >  1:12044465/1‑35
      AGCAGACCTGCTGCATAGCCCAATTGCGCGGCGGG                                   >  1:3575016/1‑35
      AGCAGACCTGCTGCATAGCCCAATTGCGCGGCGGG                                   >  1:15341698/1‑35
      AGCAGACCTGCTGCATAGCCCAATTGCGCGGCGGG                                   >  1:11415634/1‑35
      AGCAGACCTGCTGCATAGCCCAATTGCGCGGCGGG                                   >  1:7457816/1‑35
       GCAGACCTTCTGCATAGCCCAATTGCGCGGCGGGG                                  >  1:13756392/1‑35
       GCAGACCTGCTGCATAGCCCAATTGCGCGGCGGGG                                  >  1:14896042/1‑35
        CAGACCTGCTGCATAGCCCAATTGCGCGGCGGGGg                                 >  1:5827710/1‑34
        CAGACCTGCTGCATAGCCCAATTGCGCGGCGGGGA                                 >  1:18907095/1‑35
         AGACCTGCTGCATAGCCCAATTGCGCGGCGGGcag                                >  1:7675640/1‑32
         AGACCTGCTGCATAGCCCAATTGCGCGGCGGGGAg                                >  1:417878/1‑34
         AGACCTGCTGCATAGCCCAATTGCGCGGCGGGGAg                                >  1:4416694/1‑34
         AGACCTGCTGCATAGCCCAATTGCGCGGCGGGGAc                                >  1:11067706/1‑34
         AGACCTGCTGCATAGCCCAATTGCGCGGCGGGGAA                                >  1:9107740/1‑35
         AGACCTGCTGCATAGCCCAATTGCGCGGCGGGGAA                                >  1:19042449/1‑35
          GACCTGCTGCATAGCCCAATTGCGCGGCGGGGGAA                               >  1:18843696/1‑35
          GACCTGCTGCATAGCCCAATTGCGCGGCGGGGAAA                               >  1:6892417/1‑35
           ACCTGCTGCATAGCCCAATTGCGCGGCGGGGAGAA                              >  1:10589290/1‑35
           ACCTGCTGCATAGCCCAATTGCGCGGCGGGGACAA                              >  1:6527301/1‑35
            CCTGCTGCATAGCCCAATTGCGCGGCGGGGAGAAA                             >  1:16149385/1‑35
            CCTGCTGCATAGCCCAATTGCGCGGCGGGGACAAt                             >  1:12443344/1‑34
            CCTGCTGCATAGCCCAATTGCGCGGCGGGGAAAAA                             >  1:8486668/1‑35
             CTGCTGCATAGCCCAATTGCGCGGCGGGGACAAAa                            >  1:14116283/1‑34
              TGCTGCATAGCCCAATTGCGCGGCGGGGAAAAAaa                           >  1:4480879/1‑33
                 TGCATAGCCCAATTGCGCGGCGGGGAAAAAAAAAa                        >  1:1472507/1‑34
                 TGCATAGCCCAATTGCGCGGCGGGGAAAAAAAAAC                        >  1:2861662/1‑35
                                  CGGCGGGGAAAAACAAACGTTATTACACCGAGACA       >  1:8294369/1‑35
                                   GGCGTGGAAAAACAAACGTTATTACACCGAGACAG      >  1:3290203/1‑35
                                   GGCGGGGAAAAACAAACGTTATTACACCGAGACAG      >  1:2862860/1‑35
                                     gGGGGAAAAACAAACGTTATTACACCGAGACAGAA    <  1:13341760/34‑1
                                     CGGGGAAAAACAAACGTTATTACACCGAGACAGAA    >  1:15153154/1‑35
                                     CGGGGAAAAACAAACGTTATTACACCGAGACAGAA    >  1:18177123/1‑35
                                      GGGGAAAAACAAACGTTATTACACCGAGACAGAAG   >  1:18512723/1‑35
                                      GGGGAAAAACAAACGTTATTACACCGAGACAGAAG   <  1:2755148/35‑1
                                       GGGAAAACCAAACGTTATTACACCGAGACAGAAGG  <  1:8689685/35‑1
                                       GGGAAAAACAAACGTTATTACACCGAGACAGAAGG  >  1:80193/1‑35
                                       GGGAAAAACAAACGTTATTACACCGAGACAGAAGG  <  1:8247661/35‑1
                                       GGGAAAAACAAACGTTATTACACCGAGACAGAAGG  >  1:15535478/1‑35
                                                                          
AGAAACAGCAGACCTGCTGCATAGCCCAATTGCGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2703364‑2703325
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGAAAAACAAACGTTATTACACCGAGACAGAAGG  <  REL606/4091236‑4091203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.