New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2327674 =62 (0.600)14 (0.160) 5/42 NT 15.8% coding (383/462 nt) elaA predicted acyltransferase with acyl‑CoA N‑acyltransferase domain
?REL606 = 4527187 95 (1.060)coding (1178/2637 nt) fimD outer membrane usher protein, type 1 fimbrial synthesis

CGCAGGCGCATCTGCAAAACTTCTACCAGAGTTTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2327710‑2327674
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGTTTTTCCTGCTGCGCATTTCCACTACGGTATT  <  REL606/4527187‑4527154
                                                                       
CGCAGGCGCATCTGCAAAACTTCTACCAGAGTTTC                                      <  1:3592264/35‑1
CGCAGGCGCATCTGCAAAACTTCTACCAGAGTTTC                                      >  1:11638273/1‑35
CGCAGGCGCATCTGCAAAACTTCTACCAGAGTTTC                                      <  1:336704/35‑1
CGCAGGCGCATCTGCAAAACTTCTACCAGAGTTTC                                      <  1:12269439/35‑1
CGCAGGCGCATCTGCAAAACTTCTACCAGAGTTTC                                      >  1:15093219/1‑35
CGCAGGCGCATCTGCAAAACTTCTACCAGAGTTTC                                      >  1:16423703/1‑35
CGCAGGCGCATCTGCAAAACTTCTACCAGAGTTTC                                      <  1:6131688/35‑1
CGCAGGCGCATCTGCAAAACTTCTACCAGAGTTTC                                      <  1:19117196/35‑1
 gaAGGCGCATCTGCAAAACTTCTACCAGAGTTTCG                                     <  1:4163270/33‑1
 GCATGCGCATCTGCAAAACTTCTACCAGAGTTTCG                                     >  1:18378163/1‑35
 GCAGGCGCATCTGCAAAACTTCTACCAGAGTTTCa                                     <  1:4135375/35‑2
 GCAGGCGCATCTGCAAAACTTCTACCAGAGTTTCG                                     >  1:15549878/1‑35
 GCAGGCGCATCTGCAAAACTTCTACCAGAGTTTCG                                     >  1:5983625/1‑35
 GCAGGCGCATCTGCAAAACTTCTACCAGAGTTTCG                                     >  1:1479244/1‑35
 GCAGGCGCATCTGCAAAACTTCTACCAGAGTTTCG                                     >  1:4931490/1‑35
 GCAGGCGCATCTGCAAAACTTCTACCAGAGTTTCG                                     >  1:6894733/1‑35
 GCAGGCGCATCTGCAAAACTTCTACCAGAGTTTCG                                     <  1:4585386/35‑1
  CAGGCGCATCTGCAAAACTTCTACCAGAGTTTCGG                                    <  1:14076048/35‑1
  CAGGCGCATCTGCAAAACTTCTACCAGAGTTTCGG                                    <  1:13509426/35‑1
  CAGGCGCATCTGCAAAACTTCTACCAGAGTTTCGG                                    <  1:8290337/35‑1
  CAGGCGCATCTGCAAAACTTCTACCAGAGTTTCGG                                    >  1:10182689/1‑35
   AGGCGCATCTGCAAAACTTCTACCAGAGTTTCGGG                                   >  1:16183465/1‑35
   AGGCGCATCTGCAAAACTTCTACCAGAGTTTCGGG                                   >  1:13143017/1‑35
   AGGCGCATCTGCAAAACTTCTACCAGAGTTTCGGG                                   >  1:12327218/1‑35
   AGGCGCATCTGCAAAACTTCTACCAGAGTTTCGGG                                   >  1:17330428/1‑35
   AGGCGCATCTGCAAAACTTCTACCAGAGTTTCGGG                                   >  1:18323356/1‑35
   AGGCGCATCTGCAAAACTTCTACCAGAGTTTCGGG                                   >  1:3767543/1‑35
    GGCGCATCTGCAAAACTTCTACCAGAGTTTCGGGt                                  >  1:19369526/1‑34
    GGCGCATCTGCAAAACTTCTACCAGAGTTTCGGGG                                  >  1:1549973/1‑35
    GGCGCATCTGCAAAACTTCTACCAGAGTTTCGGGG                                  >  1:15694487/1‑35
     GCGCATCTGCAAAACTTCTACCAGAGTTTCGGGGT                                 >  1:4950344/1‑35
      CGCATCTGCAAAACTTCTACCAGAGTTTCGGGTTT                                >  1:20225992/1‑35
      CGCATCTGCAAAACTTCTACCAGAGTTTCGGGTTT                                >  1:20553211/1‑35
      CGCATCTGCAAAACTTCTACCAGAGTTTCGGGGTT                                >  1:516449/1‑35
      CGCATCTGCAAAACTTCTACCAGAGTTTCGGGGTT                                >  1:5190630/1‑35
      CGCATCTGCAAAACTTCTACCAGAGTTTCGGGGTT                                >  1:8451656/1‑35
       GCATCTGCAAAACTTCTACCAGAGTTTCGGGGTTa                               >  1:9272248/1‑34
       GCATCTGCAAAACTTCTACCAGAGTTTCGGGGTTT                               >  1:8373654/1‑35
       GCATCTGCAAAACTTCTACCAGAGTTTCGGGGTTT                               >  1:15020967/1‑35
       GCATCTGCAAAACTTCTACCAGAGTTTCGGGGTTT                               >  1:17593421/1‑35
       GCATCTGCAAAACTTCTACCAGAGTTTCGGGGTTT                               >  1:20023753/1‑35
       GCATCTGCAAAACTTCTACCAGAGTTTCGGGGGTT                               >  1:8733668/1‑35
        CATCTGCAAAACTTCTACCAGAGTTTCGGGGTTTT                              >  1:3597997/1‑35
         ATCTGCAAAACTTCTACCAGAGTTTCGGGTTTTTT                             >  1:1296029/1‑35
         ATCTGCAAAACTTCTACCAGAGTTTCGGGGTTTTg                             >  1:796299/1‑34
         ATCTGCAAAACTTCTACCAGAGTTTCGGGGTTTTT                             >  1:736841/1‑35
          TCTGCAAAACTTCTACCAGAGTTTCGGGGTTTTTC                            >  1:12030833/1‑35
          TCTGCAAAACTTCTACCAGAGTTTCGGGGTTTTTC                            >  1:9573883/1‑35
            TGCAAAACTTCTACCAGAGTTTCGGGGTTTTTTCT                          >  1:8006457/1‑35
            TGCAAAACTTCTACCAGAGTTTCGGGGTTTTTCCT                          >  1:3853235/1‑35
             GCAAAACTTCTACCAGAGTTTCGGGTTTTTTCCTG                         >  1:8179828/1‑35
             GCAAAACTTCTACCAGAGTTTCGGGGTTTTTTCTG                         >  1:15619384/1‑35
             GCAAAACTTCTACCAGAGTTTCGGGGTTTTTCCTG                         >  1:9634913/1‑35
              CAAAACTTCTACCAGAGTTTCGGGGTTTTTCCTtt                        >  1:7767723/1‑33
              CAAAACTTCTACCAGAGTTTCGGGGTTTTCCCTGt                        >  1:18760472/1‑34
               AAAACTTCTACCAGAGTTTCGGGGTTTTTCCTctt                       >  1:701299/1‑32
                                  CGGGGTTTTTCCTGCTGCGCATTTCCACTACGGTA    >  1:1553653/1‑35
                                  CGGGGTTTTTCCTGCTGCGCATTTCCACTACGGTA    <  1:15706207/35‑1
                                  CGGGGTTTTTCCTGCTGCGCATTTCCACTACGGTA    >  1:2722963/1‑35
                                  CGGGGTTTTTCCTGCTGCGCATTTCCACTACGGTA    >  1:2371257/1‑35
                                  CGGGGTTTTTCCTGCTGCGCATTTCCACTACGGTA    >  1:20334063/1‑35
                                   GGGGTTTTTCCTGCTGCGCATTTCCACTACGGTAT   <  1:16665662/35‑1
                                   GGGGTTTTTCCTGCTGCGCATTTCCACTACGGTAT   >  1:16917039/1‑35
                                   GGGGTTTTTCCTGCTGCGCATTTCCACTACGGTAT   >  1:4314041/1‑35
                                   GGGGTTTTTCCTGCTGCGCATTTCCACTACGGTAT   >  1:18516651/1‑35
                                   GGGGTTTTTCCTGCTGCGCATTTCCACTACGGTAT   <  1:12188887/35‑1
                                   GGGGTTTTTCCTGCTGCGCATTTCCACTACGGTAT   <  1:18878891/35‑1
                                   GGGGTTTTTCCTGCTGCGCATTTCCACTACGGTAT   >  1:11914876/1‑35
                                   GGGGTTTTTCCTGCTGCGCATTTCCACTACGGTAT   <  1:10946702/35‑1
                                    GGGTTTTTCCTGCTGCGCATTTCCACTACGGTATT  <  1:13751292/35‑1
                                    GGGTTTTTCCTGCTGCGCATTTCCACTACGGTATT  >  1:5850350/1‑35
                                                                       
CGCAGGCGCATCTGCAAAACTTCTACCAGAGTTTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2327710‑2327674
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGTTTTTCCTGCTGCGCATTTCCACTACGGTATT  <  REL606/4527187‑4527154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.