New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 283622259 (0.570)12 (0.120) 7/46 NT 15.4% coding (29/396 nt) ygdD conserved inner membrane protein
?REL606 = 4349299 75 (0.760)intergenic (‑166/‑110) yjeH/groES predicted transporter/co‑chaperonin GroES

Only 100 of 148 total aligned reads displayed.

TTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTG  >  REL606/4349265‑4349333
                                  |                                  
ttttGTGCTGATCAGAATTTTTTTTCTTTTTcccc                                    <  1:13986840/35‑1 (MQ=255)
ttttGTGCTGATCAGAATTTTTTTTCTTTTTcccc                                    >  1:4728987/1‑35 (MQ=255)
ttttGTGCTGATCAGAATTTTTTTTCTTTTTcccc                                    <  1:9138939/35‑1 (MQ=255)
 tttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCc                                   >  1:7241996‑M2/1‑34 (MQ=255)
 tttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCc                                   >  1:1828663‑M2/1‑34 (MQ=255)
  ttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCt                                  >  1:15516727/1‑35 (MQ=255)
  ttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCt                                  >  1:2275179/1‑35 (MQ=255)
  ttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCt                                  <  1:17690510/35‑1 (MQ=255)
   tgtgCTGATCAGAATTTTTTTTCTTTTTCCCCCtt                                 <  1:9468478/35‑1 (MQ=255)
   tgtgCTGATCAGAATTTTTTTTCTTTTTCCCCCtt                                 >  1:340820/1‑35 (MQ=255)
   tgtgCTGATCAGAATTTTTTTTCTTTTTCCCCCtt                                 >  1:10234117/1‑35 (MQ=255)
    gtgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTg                                <  1:11121755/35‑1 (MQ=255)
    gtgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTg                                >  1:3075019/1‑35 (MQ=255)
    gtgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTg                                <  1:9504722/35‑1 (MQ=255)
     tgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGa                               <  1:7114080/35‑1 (MQ=255)
     tgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGa                               >  1:14405541/1‑35 (MQ=255)
     tgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGa                               >  1:2958692/1‑35 (MQ=255)
      gCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGaa                              <  1:15905921/35‑1 (MQ=255)
      gCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGaa                              <  1:10423418/35‑1 (MQ=255)
      gCTGACCAGAATTTTTTTTCTTTTTCCCCCTTGaa                              >  1:15785832/1‑35 (MQ=255)
       cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAg                             >  1:18432781/1‑35 (MQ=255)
       cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAg                             >  1:16032986/1‑35 (MQ=255)
         gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAggg                           <  1:2111663/35‑1 (MQ=255)
         gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAggg                           <  1:14761103/35‑1 (MQ=255)
         gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAggg                           >  1:7182533/1‑35 (MQ=255)
         gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAggg                           >  1:8335656/1‑35 (MQ=255)
          aTCAGAATTTTTTTTCTTTTTCCCCCTTGAAgggg                          <  1:2255799/35‑1 (MQ=255)
          aTCAGAATTTTTTTTCTTTTTCCCCCTTGAAgggg                          >  1:19719298/1‑35 (MQ=255)
          aTCAGAATTTTTTTTCTTTTTCCCCCTTGAAgggg                          >  1:173168/1‑35 (MQ=255)
          aTCAGAATTTTTTTTCTTTTTCCCCCTTGAAgggg                          <  1:17438767/35‑1 (MQ=255)
           tCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGc                         >  1:14907119/1‑35 (MQ=255)
           tCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGc                         >  1:7777618/1‑35 (MQ=255)
            cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCg                        >  1:20519249/1‑35 (MQ=255)
            cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCg                        >  1:19542803/1‑35 (MQ=255)
            cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCg                        >  1:2739170/1‑35 (MQ=255)
            cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCg                        <  1:19432972/35‑1 (MQ=255)
            cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCg                        >  1:18950484/1‑35 (MQ=255)
            cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCg                        >  1:13165364/1‑35 (MQ=255)
            cAGAATTTTTTTTCTTTTTCCCCATTGAAGGGGCg                        <  1:2642146/35‑1 (MQ=255)
             aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGa                       >  1:5396023/1‑35 (MQ=255)
             aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGa                       <  1:8761531/35‑1 (MQ=255)
             aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGa                       <  1:15120587/35‑1 (MQ=255)
             aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGa                       >  1:6579760/1‑35 (MQ=255)
             aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGa                       >  1:8060749/1‑35 (MQ=255)
              gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGaa                      <  1:4902371/35‑1 (MQ=255)
              gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGaa                      <  1:3552728/35‑1 (MQ=255)
              gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGaa                      >  1:5570052/1‑35 (MQ=255)
              gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGaa                      <  1:12258805/35‑1 (MQ=255)
              gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGaa                      <  1:1580798/35‑1 (MQ=255)
                aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGc                    >  1:13960346/1‑35 (MQ=255)
                aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGc                    >  1:13287114/1‑35 (MQ=255)
                aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGc                    <  1:540492/35‑1 (MQ=255)
                aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGc                    >  1:19297670/1‑35 (MQ=255)
                 ttttttttCTTTTTCCCCCTTGAAGGGGCGAAGcc                   >  1:5108248/1‑35 (MQ=255)
                  tttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCt                  <  1:16831506/35‑1 (MQ=255)
                  tttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCt                  >  1:1925227/1‑35 (MQ=255)
                   ttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTc                 >  1:5123066/1‑35 (MQ=255)
                   ttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTc                 <  1:14716896/35‑1 (MQ=255)
                    tttttctttttcCCCccgccattagcggcttcatt                >  1:8649812‑M2/1‑15 (MQ=255)
                     ttttctttttcCCCccgccattagcggcttcattt               >  1:9172282‑M2/1‑14 (MQ=255)
                     ttttctttttcCCCCTTGAAGGGGCGAAGCCTCAt               <  1:8863419/35‑1 (MQ=255)
                     ttttctttttcCCCCTTGAAGGGGCGAAGCCTCAt               <  1:9810612/35‑1 (MQ=255)
                     ttttctttttcCCCCTTGAAGGGGCGAAGCCTCAt               <  1:15817957/35‑1 (MQ=255)
                      tttctttttcCCCCTTGAAGGGGCGAAGCCTCATc              <  1:18141594/35‑1 (MQ=255)
                      tttctttttcCCCCTTGAAGGGGCGAAGCCTCATc              >  1:15287745/1‑35 (MQ=255)
                        gcttttttcCCccgccattagcggcttcatttttg            >  1:8448551‑M2/2‑11 (MQ=255)
                         ctttttcCCCCTTGAATGGGCGAAGCCTCATcccc           >  1:4128963/1‑35 (MQ=255)
                          ttttttCCCccgccattagcggcttcatttttgtg          >  1:18774791‑M2/1‑9 (MQ=255)
                          ttttttCCCccgccattagcggcttcatttttgtg          >  1:13607276‑M2/1‑9 (MQ=255)
                          tttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCa          >  1:12454163/1‑35 (MQ=255)
                          tgtttcccCccgccattagcggcttcatttttgtg          >  1:5534186‑M2/3‑9 (MQ=255)
                           ttttcCCCccgccattagcggcttcatttttgtgg         >  1:8432535‑M2/1‑8 (MQ=255)
                           ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCAt         <  1:2480032/35‑1 (MQ=255)
                           ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCAt         >  1:17193381/1‑35 (MQ=255)
                            ttttCCCccgccattagcggcttcatttttgtggc        >  1:7830177‑M2/1‑7 (MQ=255)
                            tttcCCCCTTGAGGGGGCGAAGCCTCATCCCCAtt        <  1:12717274/35‑1 (MQ=255)
                            tttcCCCCTTGAAGGGGCGAAGCCTCATCCCCAtt        >  1:19998135/1‑35 (MQ=255)
                            tttcCCCCTTGAAGGGGCGAAGCCTCATCCCCAtt        >  1:18472888/1‑35 (MQ=255)
                            tttcCCCCTGGAAGGGGCGAAGCCTCATCCCCAtt        <  1:11543753/35‑1 (MQ=255)
                             tttCCCccgccattagcggcttcatttttgtggct       >  1:1693075‑M2/1‑6 (MQ=255)
                             ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCAttt       >  1:2838253/1‑35 (MQ=255)
                             ttaccccTTGAAGGGGCGAAGCCTCATCCCCAttt       <  1:7384901/32‑1 (MQ=255)
                              tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTtc      >  1:13466988/1‑35 (MQ=255)
                               tcccccgccattagcggcttcatttttgtggctct     >  1:14571760‑M2/2‑4 (MQ=255)
                               tcccccgccattagcggcttcatttttgtggctct     >  1:8868909‑M2/2‑4 (MQ=255)
                               ccaccTTGAAGGGGCGAAGCCTCATCCCCATTtct     <  1:9839334/32‑1 (MQ=255)
                                cccccgccattagcggcttcatttttgtggctctg    >  1:15319086‑M2/1‑3 (MQ=255)
                                cccccgccattagcggcttcatttttgtggctctg    >  1:10496118‑M2/1‑3 (MQ=255)
                                ccccTTGAAGGGGCGAAGCCTCATCCCCATTtctc    >  1:10673662/1‑35 (MQ=255)
                                ccccTTGAAGGGGCGAAGCCTCATCCCCATTtctc    >  1:16183773/1‑35 (MQ=255)
                                 ccccgccattagcggcttcatttttgtggctctgg   >  1:58400‑M2/1‑2 (MQ=255)
                                 ccccgccattagcggcttcatttttgtggctctgg   >  1:2863657‑M2/1‑2 (MQ=255)
                                 cccTTGAAGGGGCGAAGCCTCATCCCCATTTctct   <  1:6781167/35‑1 (MQ=255)
                                 cccTTGAAGGGGCGAAGCCTCATCCCCATTTctct   >  1:4556698/1‑35 (MQ=255)
                                 cccTTGAAGGGGCGAAGCCTCATCCCCATTTctct   <  1:15807496/35‑1 (MQ=255)
                                  cccgccattagcggcttcatttttgtggctctggg  >  1:3934002‑M2/1‑1 (MQ=255)
                                  ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTg  <  1:3769724/35‑1 (MQ=255)
                                  ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTg  >  1:2114371/1‑35 (MQ=255)
                                  ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTg  >  1:16164944/1‑35 (MQ=255)
                                  ccTGGAAGGGGCGAAGCCTCATCCCCATTTCTCTg  <  1:246313/35‑1 (MQ=255)
                                  |                                  
TTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTG  >  REL606/4349265‑4349333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.