Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 16,990 | IS150 (+) +3 bp | 100% | intergenic (‑32/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 16990 = | 0 (0.000) | 81 (0.790) | 38/48 | NT | 100% | intergenic (‑32/‑498) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
* | ? | REL606 | = 16992 | 0 (0.000) | 58 (0.560) | 29/48 | NT | 100% | intergenic (‑34/‑496) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region |
ATAGGGGGCCTCGGGTTGATAGTAAAATATCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/16959‑16992 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAA < REL606/2775877‑2775848 ATAGGGGGCCTCGGGTTGATAGTAAAATATCACTT > 1:7323851/1‑35 TAGGGGGCCTCGGGTTGATAGTAAAATATCACTTG > 1:8961776/1‑35 TAGGGGGCCTCGGGTTGATAGTAAAATATCACTTG < 1:4147269/35‑1 AGGGGGCCTCGTGTTGATAGTAAAATATCACTTGT > 1:14426984/1‑35 AGGGGGCCTCGGGTTGATAGTAAAATATCACTTGT > 1:17930161/1‑35 AGGGGGCCTCGGGTTGATAGTAAAATATCACTTGT > 1:5052183/1‑35 GGGGGCCTCGGGTTGATAGTAAAATATCACTTGTA < 1:11542302/35‑1 GGGCCTCGGGTTGATAGTAAAATATCACTTGTACT < 1:17983665/35‑1 GGGCCTCGGGTTGATAGTAAAATATCACTTGTACT < 1:4432378/35‑1 GGGCCTCGGGTTGATAGTAAAATATCACTTGTACT > 1:5993962/1‑35 GGGCCTCGGGTTGATAGTAAAATATCACTTGTACT > 1:6552350/1‑35 GGGCCTCGGGTTGATAGTAAAATATCACTTGTACT > 1:8353596/1‑35 GGGCCTCGGGTTGATAGTAAAATATCACTTGTACT > 1:9969976/1‑35 GGCCTCGGGTTGATAGTAAAATATCACTTGTACTG < 1:3828421/35‑1 GGCCTCGGGTTGATAGTAAAATATCACTTGTACTG > 1:15055666/1‑35 GGCCTCGGGTTGATAGTAAAATATCACTTGTACTG > 1:17143979/1‑35 cgCGGGTTGATAGTAAAATATCACTTGTACTGCAC < 1:17364000/33‑1 CTCGGGTTGATAGTAAAATATCACTTGTACTGCAC < 1:14841937/35‑1 CTCGGGTTGATAGTAAAATATCACTTGTACTGCAC < 1:15139544/35‑1 CGGGTTGATAGTAAAATATCACTTGTACTGCACCC > 1:15724519/1‑35 GGGTTGATAGTAAAATATCACTTGTACTGCACCCA > 1:11209783/1‑35 GGGTTGATAGTAAAATATCACTTGTACTGCACCCA < 1:8074118/35‑1 GGTTGATAGTAAAATATCACTTGTACTGCACCCAT > 1:11426101/1‑35 TTGATAGTAAAATATCACTTGTACTGCACCCATTT < 1:6041729/35‑1 TTGATAGTAAAATATCACTTGTACTGCACCCATTT > 1:19606351/1‑35 TTGATAGTAAAATATCACTTGTACTGCACCCATTT < 1:18534574/35‑1 TTGATAGTAAAATATCACTTGTACTGCACCCATTT < 1:15901115/35‑1 TTGATAGTAAAATATCACTTGTACTGCACCCATTT < 1:13620988/35‑1 TGATAGTAAAATATCACTTGTACTGCACCCATTTT < 1:6690504/35‑1 TGATAGTAAAATATCACTTGTACTGCACCCATTTT < 1:1876136/35‑1 GATAGTAAAATATCACTTGTACTGCACCCATTTTG > 1:8644247/1‑35 ATAGTAAAATATCACTTGTACTGCACCCATTTTGT < 1:8605442/35‑1 ATAGTAAAATATCACTTGTACTGCACCCATTTTGT < 1:11238373/35‑1 ATAGTAAAATATCACTTGTACTGCACCCATTTTGT < 1:11299600/35‑1 AGTAAAATATCACTTGTACTGCACCCATTTTGTTt > 1:11670229/1‑34 AGTAAAATATCACTTGTACTGCACCCATTTTGTTG > 1:8671/1‑35 AGTAAAATATCACTTGTACTGCACCCATTTTGTTG > 1:9766008/1‑35 AGTAAAATATCACTTGTACTGCACCCATTTTGTTG > 1:17978715/1‑35 GTAAAATATCACTTGTACTGCACCCATTTTGTTGG > 1:18476787/1‑35 GTAAAATATCACTTGTAATGCACCCATTTTGTTGG < 1:1045786/35‑1 TAAAATATCACTTGTACTGCACCCATTTTGTTGGA > 1:963334/1‑35 TAAAATATCACTTGTACTGCACCCATTTTGTTGGA > 1:8021345/1‑35 TAAAATATCACTTGTACTGCACCCATTTTGTTGGA < 1:5790305/35‑1 AAAATATCACTTGTACTGCACCCATTTTGTTGGAC > 1:8669952/1‑35 AAAATATCACTTGTACTGCACCCATTTTGTTGGAC < 1:16589599/35‑1 AAAATATCACTTGTACTGCACCCATTTTGTTGGAC > 1:10467269/1‑35 AAAATATCACTTGTACTGCACCCATTTTGTTGGAC > 1:16079460/1‑35 AAAATATCACTTGTACTGCACCCATTTTGTTGGAC < 1:277032/35‑1 AAATATCACTTGTACTGCACCCATTTTGTTGGACG > 1:9355197/1‑35 AAATATCACTTGTACTGCACCCATTTTGTTGGACG > 1:6968977/1‑35 AAATATCACTTGTACTGCACCCATTTTGTTGGACG < 1:1979318/35‑1 AAATATCACTTGTACTGCACCCATTTTGTTGGACG > 1:14005015/1‑35 AAATATCACTTGTACTGCACCCATTTTGTTGGACG < 1:11176700/35‑1 AAATATCACTTGTACTGCACCCATTTTGTTGGACG > 1:4028777/1‑35 AAATATCACTTGTACTGCACCCATTTTGTTGGACG > 1:8608878/1‑35 AAATATCACTTGTACTGCACCCATTTTGTTGGACG > 1:17462557/1‑35 AATATCACTTGTACTGCACCCATTTTGTTGGACGA < 1:9186861/35‑1 AATATCACTTGTACTGCACCCATTTTGTTGGACGA > 1:1482931/1‑35 ATATCACTTGTACTGCACCCATTTTGTTGGACaga > 1:17463347/1‑32 ATATCACTTGTACTGCACCCATTTTGTTGGACGAT < 1:5154771/35‑1 TATCACTTGTACTGCACCCATTTTGTTGGACGATG < 1:14774894/35‑1 ATCACTTGTACTGCACCCATTTTGTTGGACGATGA < 1:11205532/35‑1 ATCACTTGTACTGCACCCATTTTGTTGGACGATGA < 1:11645009/35‑1 ATCACTTGTACTGCACCCATTTTGTTGGACGATGA < 1:5610025/35‑1 ATCACTTGTACTGCACCCATTTTGTTGGACGATGA > 1:3006609/1‑35 TCACTTGTACTGCACCCATTTTGTTGGACGATGAA < 1:8871152/35‑1 TCACTTGTACTGCACCCATTTTGTTGGACGATGAA > 1:3430756/1‑35 TCACTTGTACTGCACCCATTTTGTTGGACGATGAA > 1:10125823/1‑35 ATAGGGGGCCTCGGGTTGATAGTAAAATATCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/16959‑16992 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAA < REL606/2775877‑2775848 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |