New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 177442943 (0.420)8 (0.090) 4/40 NT 14.3% coding (783/2388 nt) pheT phenylalanyl‑tRNA synthetase beta subunit
?REL606 = 2595910 60 (0.700)coding (551/1062 nt) yphC predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding

CTTCAATGCGATCTTTATCGAAAGCGTGCATCGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1774392‑1774429
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggGGCCGGTCGGCATGATGGCGATGATGCTGGCGAA  <  REL606/2595910‑2595877
                                                                        
CTTCAATGCGATCTTTATCTAAAGCGTGCATCGGC                                       >  1:18271517/1‑35
CTTCAATGCGATCTTTATCGAAAGCGTGCATCGGC                                       >  1:10006281/1‑35
CTTCAATGCGATCTTTATCGAAAGCGTGCATCGGC                                       <  1:16531645/35‑1
CTTCAATGCGATCTTTATCGAAAGCGTGCATCGGC                                       >  1:16863264/1‑35
CTTCAATGCGATCTTTATCGAAAGCGTGCATCGGC                                       >  1:7167261/1‑35
CTTCAATGCGATCTTTATCGAAAGCGTGCATCGGC                                       >  1:18032647/1‑35
CTTCAATGCGATCTTTATCGAAAGCGTGCATCGGC                                       <  1:9482085/35‑1
CTTCAATGCGATCTTTATCGAAAGCGTGCATCGGC                                       >  1:19490546/1‑35
 TTCAATGCGATCTTTATCGAAAGCGTGCATCGGCT                                      <  1:5900771/35‑1
 TTCAATGCGATCTTTATCGAAAGCGTGCATCGGCT                                      <  1:19356871/35‑1
 TTCAATGCGATCTTTATCGAAAGCGTGCATCGGCT                                      <  1:9657732/35‑1
 TTCAATGCGATCTTTATCGAAAGCGTGCATCGGCT                                      <  1:11083826/35‑1
 TTCAATGCGATCTTTATCGAAAGCGTGCATCGGCT                                      >  1:293930/1‑35
  TCAATGCGATCTTTATCGAAAGCGTGCATCGGCTG                                     >  1:8992540/1‑35
   CAATGCGATCTTTATCGAAAGCGTGCATCGGCTGG                                    <  1:19991068/35‑1
   CAATGCGATCTTTATCGAAAGCGTGCATCGGCTGG                                    <  1:8450383/35‑1
   CAATGCGATCTTTATCGAAAGCGTGCATCGGCTGG                                    <  1:12979658/35‑1
   CAATGCGATCTTTATCGAAAGCGTGCATCGGCTGG                                    >  1:718152/1‑35
   CAATGCGATCTTTATCGAAAGCGTGCATCGGCTGG                                    >  1:7445544/1‑35
    AATGCGATCTTTATCGAAAGCGTGCATCGGCTGGG                                   >  1:20276736/1‑35
    AATGCGATCTTTATCGAAAGCGTGCATCGGCTGGG                                   >  1:15122842/1‑35
    AATGCGATCTTTATCGAAAGCGTGCATCGGCTGGG                                   >  1:11160338/1‑35
    AATGCGATCTTTATCGAAAGCGTGCATCGGCTGGG                                   >  1:7919196/1‑35
    AATGCGATCTTTATCGAAAGCGTGCATCGGCTGGG                                   >  1:14161753/1‑35
    AATGCGATCTTTATCGAAAGCGTGCATCGGCTGGG                                   >  1:1157368/1‑35
     ATGCGATCTTTATCGAAAGCGTGCATTGGCTGGGG                                  >  1:14444730/1‑35
     ATGCGATCTTTATCGAAAGCGTGCATCGGCTGGGc                                  >  1:14953498/1‑34
     ATGCGATCTTTATCGAAAGCGTGCATCGGCTGGGG                                  >  1:19607030/1‑35
      TGCGATCTTTATCGAAAGCGTGCATCGGCTGGGcc                                 >  1:10067001/1‑33
      TGCGATCTTTATCGAAAGCGTGCATCGGCTGGGGg                                 >  1:16762365/1‑34
       GCGATCTTTATCGAAAGCGTGCATCGGCTGGGGCg                                >  1:5716693/1‑34
       GCGATCTTTATCGAAAGCGTGCATCGGCTGGGGCg                                >  1:19033125/1‑34
       GCGATCTTTATCGAAAGCGTGCATCGGCTGGGGCg                                >  1:12213351/1‑34
       GCGATCTTTATCGAAAGCGTGCATCGGCTGGGGCC                                >  1:15012455/1‑35
        CGATCTTTATCGAAAGCGTGCATCGGCTGGGGCCG                               >  1:3966051/1‑35
         GATCTTTATCGAAAGCGTGCATCGGCTGGGGCGGG                              >  1:1208349/1‑35
          ATCTTTATCGAAAGCGTGCATCGGCTGGGGCGGGg                             >  1:6852737/1‑34
          ATCTTTATCGAAAGCGTGCATCGGCTGGGCCCGGT                             >  1:12593048/1‑35
            CTTTATCGAAAGCGTGCATCGGCTGGGGGCGGTCG                           >  1:15869106/1‑35
            CTTTATCGAAAGCGTGCATCGGCTGGGGCCGGTCG                           >  1:8516287/1‑35
             TTTATCGAAAGCGTGCATCGGCTGGGGCCGGTCGG                          >  1:9919687/1‑35
             TTTATCGAAAGCGTGCATCGGCTGGGGCCGGTCGG                          >  1:4390020/1‑35
              TTATCGAAAGCGTGCATCGGCTGGGGCCGGTCGGg                         >  1:11291789/1‑34
                                  CTGGGGCCGGTCGGCGTGATGGCGATGATGCTGGC     <  1:15268549/35‑1
                                  CTGGGGCCGGTCGGCGTGATGGCGATGATGCTGGC     <  1:11373628/35‑1
                                  CTGGGGCCGGTCGGCATGATGGCGATGATGCTGGC     <  1:19877588/35‑1
                                  CTGGGGCCGGTCGGCATGATGGCGATGATGCTGGC     <  1:18869087/35‑1
                                  CTGGGGCCGGTCGGCATGATGGCGATGATGCTGGC     <  1:15316427/35‑1
                                  CTGGGGCCGGTCGGCATGATGGCGATGATGCTGGC     >  1:783797/1‑35
                                  CTGGGGCCGGTCGGCATGATGGCGATGATGCTGGC     <  1:12690644/35‑1
                                  CTGGGGCCGGTCGGCATGATGGCGATGATGCTGGC     >  1:11973439/1‑35
                                   TGGGGCCGGTCGGCATGATGGCGATGATGCTGGCG    >  1:18159654/1‑35
                                   TGGGGCCGGTCGGCATGATGGCGATGATGCTGGCG    <  1:17601995/35‑1
                                   TGGGGCCGGTCGGCATGATGGCGATGATGCTGGCG    <  1:11533596/35‑1
                                     GGGCCGGTCGGCATGATGGCGATGATGCTGGCGAA  >  1:5315485/1‑35
                                     GGGCCGGTCGGCATGATGGCGATGATGCTGGCGAA  <  1:14849992/35‑1
                                     GGGCCGGTCGGCATGATGGCGATGATGCTGGCGAA  <  1:12168262/35‑1
                                     GGGCCGGTCGGCATGATGGCGATGATGCTGGCGAA  <  1:5283613/35‑1
                                     GGGCAGGTCGGCATGATGGCGATGATGCTGGCGAA  <  1:6381408/35‑1
                                                                        
CTTCAATGCGATCTTTATCGAAAGCGTGCATCGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1774392‑1774429
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggGGCCGGTCGGCATGATGGCGATGATGCTGGCGAA  <  REL606/2595910‑2595877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.