New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1857572 =NA (NA)13 (0.200) 4/30 NT 17.7% noncoding (509/1343 nt) IS186 repeat region
?REL606 = 2118058 97 (0.940)coding (720/2292 nt) ECB_02004 Replication gene A protein

Only 100 of 271 total aligned reads displayed.

GTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCtgctgtcgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1857605‑1857572
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCTGTCGGGGAGGTCAATAAAGACCGTTCTCCTTATGCCAGT  <  REL606/2118058‑2118016
                                                                             
GTTTGCTCAAATCGGTCCAGCCGTTCAGCGTCTCT                                            >  1:15978204/1‑35
GTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCT                                            >  1:17802898/1‑35
GTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCT                                            >  1:1718195/1‑35
GTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCT                                            >  1:14762300/1‑35
GTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCT                                            >  1:14280535/1‑35
 TTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTG                                           >  1:994449/1‑35
 TTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTG                                           >  1:7047505/1‑35
 TTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTG                                           >  1:14450181/1‑35
  TTGCGCAAATCGGTCCAGCGGTTCAGCGTCTCTGC                                          <  1:3910688/35‑1
  TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTtc                                          >  1:4685476/1‑33
  TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTcg                                          >  1:1854517/1‑33
  TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGC                                          >  1:10602937/1‑35
  TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGC                                          >  1:151218/1‑35
  TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGC                                          >  1:3677361/1‑35
  TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGC                                          >  1:19093833/1‑35
  TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGC                                          >  1:7739277/1‑35
  TTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGC                                          >  1:18740560/1‑35
   TGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCT                                         >  1:16615919/1‑35
   TGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCT                                         >  1:7519105/1‑35
    GCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTG                                        >  1:17231110/1‑35
    GCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTG                                        >  1:19968109/1‑35
     CGCAAATCGGTCCAGCCGTTCAGCTTCTCTGCTGT                                       >  1:5558672/1‑35
     CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT                                       >  1:19263195/1‑35
     CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT                                       >  1:14207289/1‑35
     CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT                                       >  1:221916/1‑35
     CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT                                       >  1:1360603/1‑35
     CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT                                       >  1:15843956/1‑35
     CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT                                       >  1:10689451/1‑35
     CGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGT                                       >  1:8690367/1‑35
     CGCAAATCGCTCCAGCCGTTCAGCGTCTCTGCTGT                                       <  1:15818020/35‑1
      GCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTC                                      >  1:17119352/1‑35
      GCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTC                                      >  1:19951989/1‑35
      GCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTC                                      >  1:14509735/1‑35
      GCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTC                                      >  1:2290636/1‑35
       CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG                                     >  1:6146370/1‑35
       CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG                                     >  1:2384375/1‑35
       CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG                                     >  1:2558615/1‑35
       CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG                                     >  1:5085996/1‑35
       CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG                                     >  1:955437/1‑35
       CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG                                     >  1:4505467/1‑35
       CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG                                     >  1:9715794/1‑35
       CAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCG                                     >  1:7207541/1‑35
        AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGG                                    >  1:12211204/1‑35
        AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGG                                    >  1:11399928/1‑35
        AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGG                                    >  1:2832053/1‑35
        AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGG                                    >  1:13045565/1‑35
        AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGG                                    >  1:8093000/1‑35
        AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGG                                    >  1:12058455/1‑35
        AAATCGGTCCAGCCGTTCAGCGTCTCTGCTGGCGG                                    >  1:15325648/1‑35
         AATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGG                                   >  1:8853515/1‑35
         AATCGGTCCAGCCGTTCAGCGTCTCTGCTGGCGGG                                   >  1:10311398/1‑35
          ATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGt                                  >  1:17616236/1‑34
          ATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGG                                  >  1:16913177/1‑35
          ATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGG                                  >  1:15181918/1‑35
           TCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGg                                 >  1:13903530/1‑34
            CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGttg                                >  1:12986713/1‑32
            CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGttg                                >  1:18297659/1‑32
            CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGtgg                                >  1:15870501/1‑32
            CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGtg                                >  1:12436963/1‑33
            CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGtg                                >  1:15073278/1‑33
            CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGgg                                >  1:13694568/1‑33
            CGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGgg                                >  1:12653573/1‑33
             GGTCCATCCGTTCAGCGTCTCTGCTGTCGGGGAGG                               >  1:18077954/1‑35
             GGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGgtg                               >  1:3325673/1‑32
             GGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGggt                               >  1:16345166/1‑32
             GGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGgaa                               >  1:19679677/1‑32
             GGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGTGG                               >  1:8484328/1‑35
             GGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGGGG                               >  1:20184458/1‑35
             GGTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGGGG                               >  1:14670904/1‑35
              GTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGTGGc                              >  1:3586023/1‑34
              GTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGTGGT                              >  1:5493950/1‑35
              GTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGGGGc                              >  1:20302370/1‑34
              GTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGGGGT                              >  1:3516005/1‑35
              GTCCAGCCGTTCAGCGTCTCTGCTGTCGGGGGGGT                              >  1:4883276/1‑35
                CCAGCCGTTCAGCGTCTCTGCTGTCGGGGTGGTCt                            >  1:9432320/1‑34
                CCAGCCGTTCAGCGTCTCTGCTGTCGGGGTGGTCA                            >  1:6310693/1‑35
                CCAGCCGTTCAGCGTCTCTGCTGTCGGGGAGGTta                            >  1:10145678/1‑33
                 CAGCCGTTCAGCGTCTCTGCTGTCGGGGGGGTCAA                           >  1:7341722/1‑35
                 CAGCCGTTCAGCGTCTCTGCTGTCGGGGAGGTCAA                           >  1:8016734/1‑35
                 CAGCCGTTCAGCGTCTCTGCTGTCGGGGAGCTCAA                           >  1:4012855/1‑35
                  AGCCGTTCAGCGTCTCTGCTGTCGGGTAGGTCAAa                          >  1:18985418/1‑34
                                   GCTGTCGGGGAGGTCAATAAAGACCGTTCTCCTTA         <  1:10171783/35‑1
                                   GCTGTCGGGGAGGTCAATAAAGACCGTTCTCCTTA         <  1:3170615/35‑1
                                    CTGTCGGGGAGGTCAATAAAGACCGTTCTCCTTAT        >  1:6434612/1‑35
                                    CTGTCGGGGAGGTCAATAAAGACCGTGCTCCTTAT        >  1:20437917/1‑35
                                     TGTCGGGGAGGTCAATAAAGACCGTTCTCCTTATG       <  1:5868829/35‑1
                                     TGTCGGGGAGGTCAATAAAGACCGTTCTCCTTATG       >  1:12797716/1‑35
                                      GTCGGGGAGGTCAATAAAGACCGTTCTCCTTATGC      <  1:13303446/35‑1
                                      GTCGGGGAGGTCAATAAAGACCGTTCTCCTTATGC      >  1:13107587/1‑35
                                       TCGGGGAGGTCAATAAAGACCGTTCTCCTTATGCC     >  1:10851816/1‑35
                                        CGGGGATGTCAATAAAGACCGTTCTCCTTATGCCA    >  1:11571037/1‑35
                                        CGGGGAGGTCAATAAAGACCGTTCTCCTTATGCCA    <  1:3845580/35‑1
                                        CGGGGAGGTCAATAAAGACCGTTCTCCTTATGCCA    >  1:15624857/1‑35
                                        CGGGGAGGTCAATAAAGACCGTTCTCCTTATGCCA    <  1:19328307/35‑1
                                         GGGGAGGTCAATAAAGACCGTTCTCCTTATGCCAG   >  1:13260850/1‑35
                                         GGGGAGGTCAATAAAGACCGTTCTCCTTATGCCAG   >  1:16059724/1‑35
                                          GGGAGGTCAATAAAGACCGTTCTCCTTATGCCAGT  <  1:11691587/35‑1
                                          GGGAGGTCAATAAAGACCGTTCTCCTTATGCCAGT  <  1:909217/35‑1
                                          GGGAGGTCAATAAAGACCGTTCTCCTTATGCCAGT  <  1:20591318/35‑1
                                          GGGAGGTCAATAAAGACCGTTCTCCTTATGCAAGT  <  1:8229558/35‑1
                                                                             
GTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCtgctgtcgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1857605‑1857572
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCTGTCGGGGAGGTCAATAAAGACCGTTCTCCTTATGCCAGT  <  REL606/2118058‑2118016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.