New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3258154 =65 (0.630)8 (0.110) 5/34 NT 13.0% coding (1151/1338 nt) glmM phosphoglucosamine mutase
?REL606 3281934 = 61 (0.840)coding (122/492 nt) ptsN sugar‑specific enzyme IIA component of PTS

CAGATTCTGGTTAACGTACGTTACACCGCAGGTAGCGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3258194‑3258154
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgaAACAACTTAGCCTGCCGCCTCAGGTGGTTTTTGA  >  REL606/3281934‑3281967
                                                                           
CAGATTCTGGTTAACGTACGTTACACCGCAGGTAG                                          >  1:7687817/1‑35
CAGATTCTGGTTAACGTACGTTACACCGCAGGGAG                                          >  1:19403441/1‑35
CAGATTCTGGTTAACGTACGTTACACCGCAGGGAG                                          >  1:2744573/1‑35
 AGATTCTGGTTAACGTACGTTACACCGCAGGTAGg                                         >  1:4619344/1‑34
  GATTCTGGTTAACGTACGTTACACCGCAGGTAGCG                                        >  1:19384226/1‑35
  GATTCTGGTTAACGTACGTTACACCGCAGGTAGCG                                        >  1:4576465/1‑35
  GATTCTGGTTAACGTACGTTACACCGCAGGGAGCG                                        >  1:13619547/1‑35
   ATTCTGGTTAACGTACGTTACACCGCAGGTAGGGG                                       >  1:3915690/1‑35
   ATTCTGGTTAACGTACGTTACACCGCAGGTAGCGG                                       >  1:20406304/1‑35
   ATTCTGGTTAACGTACGTTACACCGCAGGTAGCGG                                       >  1:11303437/1‑35
      ctcGTTAACGTACGTTACACCGCAGGTAGCGGCGA                                    >  1:7692711/4‑35
      CTGGTTAACGTACGTTACACCGCATGTAGCGGCGg                                    >  1:17139656/1‑34
      CTGGTTAACGTACGTTACACCGCAGGTAGCGGCGA                                    >  1:1476353/1‑35
       TGGTTAACGTACGTTACACCGCAGGTAGCGGCGga                                   >  1:11668598/1‑33
        GGTTAACGTACGTTACACCGCAGGTAGCGGCGAAc                                  >  1:3488903/1‑34
        GGTTAACGTACGTTACACCGCAGGTAGCGGCGAAA                                  >  1:2900768/1‑35
          TTAACGTACGTTACACCGCAGGTAGCGGCGAAACA                                >  1:17549297/1‑35
           TAACGTACGTTACACCGCAGGTAGCGGCGAAACcc                               >  1:1432541/1‑33
           TAACGTACGTTACACCGCAGGTAGCGGCGAAACAc                               >  1:3401707/1‑34
             ACGTACGTTACACCGCAGGTAGCGGCGAACCAACc                             >  1:7286277/1‑34
             ACGTACGTTACACCGCAGGTAGCGGCGAAACACCT                             >  1:18147064/1‑35
              CGTACGTTACACCGCAGGTAGCGGCGAAACCACTa                            >  1:695931/1‑34
              CGTACGTTACACCGCAGGTAGCGGCGAAACACCTT                            >  1:7808690/1‑35
               GTACGTTACACCGCAGGTAGCGGCGAAACAACTTg                           >  1:19759372/1‑34
                TACGTTACACCGCAGGTAGCGGCGAAACAACTTAG                          >  1:8997025/1‑35
                 ACGTTACACCGCAGGTAGCGGCGAAACCACTTAGC                         >  1:14330826/1‑35
                    TTACACCGCAGGTAGCGGCGAAACAACTTAGCATG                      >  1:4871720/1‑35
                                   CGGCGAAACAACTTAGCCTGCCGCCTCAGGTGGgt       >  1:18392172/1‑33
                                   CGGCGAAACAACTTAGCCTGCCGCCTCAGGTGGgt       >  1:5451146/1‑33
                                   CGGCGAAACAACTTAGCCTGCCGCCTCAGGTGGgt       >  1:3426204/1‑33
                                   CGGCGAAACAACTTAGCCTGCCGCCTCAGGTGGgt       >  1:15864828/1‑33
                                   CGGCGAAACAACTTAGCCTGCCGCCTCAGGTGGTT       >  1:20592735/1‑35
                                   CGGCGAAACAACTTAGCCTGCCGCCTCAGGTGGTT       >  1:15974956/1‑35
                                    GGCGAAACAACTTAGCCTGCCGCCTCAGGTGGGTT      >  1:598015/1‑35
                                    GGCGAAACAACTTAGCCTGCCGCCTCAGGTGGGTT      >  1:4151264/1‑35
                                     gcaAAACAACTTAGCCTGCCGCCTCAGGTGGTTTT     <  1:1771979/32‑1
                                     gcaAAACAACTTAGCCTGCCGCCTCAGGTGGTTTT     <  1:12721385/32‑1
                                     GCGAAACAACTTAGCCTGCCGCCTCAGGTGGTTTT     >  1:255007/1‑35
                                      CGAAACAACTTAGCCTGCCGCCTCAGGTGGTTTTT    >  1:291292/1‑35
                                      CGAAACAACTTAGCCTGCCGCCTCAGGTGGTTTTT    >  1:12531262/1‑35
                                      CGAAACAACTTAGCCTGCCGCCTCAGGTGGTTTTT    >  1:19809534/1‑35
                                      CGAAACAACTTAGCCTGCCGCCTCAGGTGGGTTTT    >  1:1365283/1‑35
                                      CGAAACAACTTAGCCTGCCGCCTCAGGTGGGTTTT    >  1:15472409/1‑35
                                      CGAAACAACTTAGCCTGCCGCCTCAGGTGGGTTTT    >  1:11696057/1‑35
                                       GAAACAACTTAGCCTGCCGCCTCAGGTTGTTTTTG   >  1:15200463/1‑35
                                       GAAACAACTTAGCCTGCCGCCTCAGGTGGTTTTTG   >  1:1863262/1‑35
                                       GAAACAACTTAGCCTGCCGCCTCAGGTGGTTTTTG   >  1:1877758/1‑35
                                       GAAACAACTTAGCCTGCCGCCTCAGGTGGGTTTTG   >  1:16696074/1‑35
                                        AAACAACTTAGCCTGCCGCCTCAGGTGGTTTTTtg  >  1:1692975/1‑33
                                        AAACAACTTAGCCTGCCGCCTCAGGTGGTTTTTGA  >  1:7627906/1‑35
                                        AAACAACTTAGCCTGCCGCCTCAGGTGGGTTTTGA  >  1:4134817/1‑35
                                                                           
CAGATTCTGGTTAACGTACGTTACACCGCAGGTAGCGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3258194‑3258154
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgaAACAACTTAGCCTGCCGCCTCAGGTGGTTTTTGA  >  REL606/3281934‑3281967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.