New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 185846047 (0.460)4 (0.050) 4/40 NT 6.2% intergenic (+227/+239) insL‑4/yeaS putative transposase insL for insertion sequence IS186/neutral amino‑acid efflux system
?REL606 = 4005717 82 (0.960)intergenic (+18/+265) fre/fadA NAD(P)H‑flavin reductase/acetyl‑CoA acetyltransferase

Only 100 of 110 total aligned reads displayed.

CCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGC  >  REL606/1858426‑1858494
                                  |                                  
ccTTTATCAAGATGACGTTCGAATATGCCGGCAGG                                    >  1:3907969‑M1/1‑35 (MQ=255)
ccTTTATCAAGATGACGTTCGAATATGCCGGCAGG                                    <  1:5407566‑M1/35‑1 (MQ=255)
ccTTTATCAAGATGACGTTCGAATATGCCGGCAGG                                    >  1:12272256‑M1/1‑35 (MQ=255)
ccTTTATCAAGATGACGTTCGAATATGCCGGCAGG                                    >  1:12714775‑M1/1‑35 (MQ=255)
 cTTTATCAAGATGACGTTCGAATATGCCGGCAGgc                                   <  1:1537688/35‑1 (MQ=255)
 cTTTATCAAGATGACGTTCGAATATGCCGGCAGgc                                   <  1:290898/35‑1 (MQ=255)
 cTTTATCAAGATGACGTTCGAATATGCCGGCAGgc                                   <  1:13730210/35‑1 (MQ=255)
 cTTTATCAAGATGACGTTCGAATATGCCGGCAGGg                                   >  1:20111443‑M1/1‑34 (MQ=255)
 cTTTATCAAGATGACGTTCGAATATGCCGGCAGGg                                   >  1:6065362‑M1/1‑34 (MQ=255)
 cTTTATCAAGATGACGTTCGAATATGCCGGCAGGg                                   >  1:11634500‑M1/1‑34 (MQ=255)
 cTTTATCAAGATGACGTTCGAATATGCCGGCAGGg                                   >  1:13105805‑M1/1‑34 (MQ=255)
  tttATCAAGATGACGTTCGAATATGCCGGCAGGgg                                  >  1:18622510‑M1/1‑33 (MQ=255)
  tttATCAAGATGACGTTCGAATATGCCGGCAGGgg                                  >  1:10199156‑M1/1‑33 (MQ=255)
   ttgtCAAGATGCCGTTCGAATATGCCGGCAGgcgc                                 <  1:15281776/32‑1 (MQ=38)
   ttATCAAGATGACGTTCGAATATGCCGGCAGgcgc                                 <  1:17399954/35‑1 (MQ=255)
   ttATCAAGATGACGTTCGAATATGCCGGCAGgcgc                                 <  1:13513393/35‑1 (MQ=255)
    tATCAAGATGACGTTCGAATATGCCGGCAGGgggg                                >  1:1807498‑M1/1‑31 (MQ=255)
    tATCAAGATGACGTTCGAATATGCCGGCAGGgggg                                >  1:15109733‑M1/1‑31 (MQ=255)
    tATCAAGATGACGTTCGAATATGCCGGCAGGCGCa                                <  1:972438/35‑1 (MQ=255)
    tATCAAGATGACGTTCGAATATGCCGGCAGGCGCa                                <  1:19291163/35‑1 (MQ=255)
    tATCAAGATGACGTTCGAATATGCCGGCAGGCGCa                                <  1:8475232/35‑1 (MQ=255)
      tCAAGATGACGTTCGAATATGCCGGCAGGgggggg                              >  1:16737928‑M1/1‑29 (MQ=255)
      tCAAGATGACGTTCGAATATGCCGGCAGGCGCAgt                              <  1:20019967/35‑1 (MQ=255)
       cAAGATGACGTTCGAATATGCCGGCAGGggggggt                             >  1:16525653‑M1/1‑28 (MQ=255)
       cAAGATGACGTTCGAATATGCCGGCAGGCGCAgtt                             <  1:19776401/35‑1 (MQ=255)
        aaGATGACGTTCGAATATGCAGGCAGGCGCAgttt                            <  1:5815204/35‑1 (MQ=255)
         aGATGACGTTCGAATATGCCGGCAGGCGCAgtttg                           <  1:11305998/35‑1 (MQ=255)
          gATGACGTTCGAATATGCCGGCAGGCGCAgtttgt                          <  1:19701735/35‑1 (MQ=255)
           aTGACGGTCGAATATGCCGGCAGGCGCAgtttgtt                         <  1:5618628/35‑1 (MQ=255)
            tGACGTTCGAATATGCCGGCAGGggggggtttttt                        >  1:6784187‑M1/1‑23 (MQ=255)
            tGACGTTCGAATATGCCGGCAGGCGCAgtttgttt                        <  1:6745501/35‑1 (MQ=255)
            tGACGTTCGAATATGCCGGCAGGCGCAgtttgttt                        <  1:4662860/35‑1 (MQ=255)
             gACGTTCGAATATGCCGGCAGGggcggggtttttt                       >  1:3654293‑M1/1‑22 (MQ=255)
               cGTTCGAATATGCCGGCAGGCGCAGTTTGTTTAtt                     <  1:3969170/35‑1 (MQ=255)
               cGTTCGAATATGCCGGCAGGCGCAGTTTGTTTAtt                     <  1:12959260/35‑1 (MQ=255)
                gTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTc                    <  1:11070090/35‑1 (MQ=255)
                gTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTc                    <  1:18013171/35‑1 (MQ=255)
                 ttCGAATATGCCGGCAGGCGCAGTTTGTTTATTcc                   <  1:15761352/35‑1 (MQ=255)
                  tCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCa                  <  1:9906541/35‑1 (MQ=255)
                  tCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCa                  <  1:15770818/35‑1 (MQ=255)
                   cGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAg                 <  1:9246633/35‑1 (MQ=255)
                    taaTATGCCGGCAGGCGCAGTTTGTTTATTCCAGa                <  1:9715725/34‑1 (MQ=255)
                    gAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGa                <  1:10127423/35‑1 (MQ=255)
                    gAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGa                <  1:9549122/35‑1 (MQ=255)
                     aaTATGCCGGCAGGCGCAGTTTGTTTATTCCAGaa               <  1:19898061/35‑1 (MQ=255)
                     aaTATGCCGGCAGGCGCAGTTTGTTTATTCCAGaa               <  1:6668015/35‑1 (MQ=255)
                      atatGCCGGCAGGCGCAGTTTGTTTATTCCAGaaa              <  1:842341/35‑1 (MQ=255)
                      atatGCCGGCAGGCGCAGTTTGTTTATTCCAGaaa              <  1:11156873/35‑1 (MQ=255)
                      atatGCCGGCAGGCGCAGTTTGTTTATTCCAGaaa              <  1:3614253/35‑1 (MQ=255)
                      atatGCCGGCAGGCGCAGTTTGTTTATTCCAGaaa              <  1:15050774/35‑1 (MQ=255)
                       tatGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAg             <  1:16725027/35‑1 (MQ=255)
                       tatGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAg             <  1:8428198/35‑1 (MQ=255)
                        atGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAgg            <  1:16486447/35‑1 (MQ=255)
                        atGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAgg            <  1:19918672/35‑1 (MQ=255)
                         tGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGc           <  1:11122255/35‑1 (MQ=255)
                         tGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGc           <  1:12025019/35‑1 (MQ=255)
                         tGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGc           <  1:8550421/35‑1 (MQ=255)
                          gCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCg          <  1:1778933/35‑1 (MQ=255)
                           ccGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGt         <  1:13901282/35‑1 (MQ=255)
                           ccGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGt         <  1:17083763/35‑1 (MQ=255)
                            cGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGtt        <  1:1608730/35‑1 (MQ=255)
                            cGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGtt        <  1:9553514/35‑1 (MQ=255)
                            cGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGtt        <  1:18805393/35‑1 (MQ=255)
                            cGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGtt        <  1:829687/35‑1 (MQ=255)
                             ggCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTg       <  1:17049625/35‑1 (MQ=255)
                             ggCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTg       <  1:9445540/35‑1 (MQ=255)
                             ggCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTg       <  1:4199158/35‑1 (MQ=255)
                              gCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGa      >  1:14020940/1‑35 (MQ=255)
                              gCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGa      <  1:17969586/35‑1 (MQ=255)
                              gCAGGAGCAGTTTGTTTATTCCAGAAAGGCGTTGa      <  1:2713631/35‑1 (MQ=255)
                               cAGGggcgggtttttttatatctcagataaatgca     <  1:19322201‑M1/35‑32 (MQ=255)
                               cAGGggcgggtttttttatatctcagataaatgca     <  1:19665124‑M1/35‑32 (MQ=255)
                               cAGGggcgggtttttttatatctcagataaatgca     <  1:10686218‑M1/35‑32 (MQ=255)
                               cAGGggcgggtttttttatatctcagataaatgca     <  1:2842485‑M1/35‑32 (MQ=255)
                               cAGGggcgggtttttttatatctcagataaatgca     <  1:707714‑M1/35‑32 (MQ=255)
                               cAGGggcggggttttttatatctcagataaatgca     >  1:18181900‑M1/1‑4 (MQ=255)
                                aGGggcgggtttttttatatctcagataaatgcaa    <  1:7857009‑M1/35‑33 (MQ=255)
                                aGGggcgggtttttttatatctcagataaatgcaa    <  1:8801755‑M1/35‑33 (MQ=255)
                                aGGggcgggtttttttatatctcagataaatgcaa    <  1:152013‑M1/35‑33 (MQ=255)
                                aGGggcgggtttttttatatctcagataaatgcaa    <  1:17832562‑M1/35‑33 (MQ=255)
                                aGGggcgggtttttttatatctcagataaatgcaa    <  1:13930057‑M1/35‑33 (MQ=255)
                                aGGggcggggttttttatatctcagataaatgcaa    >  1:10420658‑M1/1‑3 (MQ=255)
                                aGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAgc    >  1:11689241/1‑35 (MQ=255)
                                 ggggcgggtttttttatatctcagataaatgcaaa   <  1:10027135‑M1/35‑34 (MQ=255)
                                 ggggcgggtttttttatatctcagataaatgcaaa   <  1:1078738‑M1/35‑34 (MQ=255)
                                 ggggcgggtttttttatatctcagataaatgcaaa   <  1:6153528‑M1/35‑34 (MQ=255)
                                 ggCGCAGTTTGTTTATTCCAGAAAGGCGTTGAgcg   <  1:3840802/35‑1 (MQ=255)
                                 ggCGCAGTTTGTTTATTCCAGAAAGGCGTTGAgcg   <  1:9481678/35‑1 (MQ=255)
                                 ggCGCAGTTTGTTTATTCCAGAAAGGCGTTGAgcg   >  1:17411849/1‑35 (MQ=255)
                                  gggcgggtttttttatatctcagataaatgcaaac  <  1:16859067‑M1/35‑35 (MQ=255)
                                  gggcgggtttttttatatctcagataaatgcaaac  <  1:460271‑M1/35‑35 (MQ=255)
                                  gggcgggtttttttatatctcagataaatgcaaac  >  1:377462‑M1/1‑1 (MQ=255)
                                  gggcgggtttttttatatctcagataaatgcaaac  <  1:14188472‑M1/35‑35 (MQ=255)
                                  gggcgggtttttttatatctcagataaatgaaaac  <  1:4677017‑M1/35‑35 (MQ=255)
                                  gggcgggtttttttatatcacagataaatgcaaac  <  1:3809844‑M1/35‑35 (MQ=255)
                                  gggcgggcttttttatatctcagataaatgcaaac  >  1:13915176‑M1/1‑1 (MQ=255)
                                  gggagggtttttttatatctcagataaatgcaaac  <  1:19926013‑M1/35‑35 (MQ=255)
                                  gcgcAGTTTGTTTATTCCAGAAAGGCGTTGAgcgc  >  1:5873203/1‑35 (MQ=255)
                                  gcgcAGTTTGTTTATTCCAGAAAGGCGTTGAgcgc  <  1:13095990/35‑1 (MQ=255)
                                  gcgcAGTTTGTTTATTCCAGAAAGGCGTTGAgcgc  >  1:929780/1‑35 (MQ=255)
                                  |                                  
CCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGC  >  REL606/1858426‑1858494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.