New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2389861 = | 74 (0.720) | 12 (0.150) | 5/38 | NT | 19.1% | coding (116/825 nt) | mepA | penicillin‑insensitive murein endopeptidase |
? | REL606 | = 2877079 | 43 (0.530) | intergenic (‑276/+39) | araE/kduD | arabinose transporter/2‑deoxy‑D‑gluconate 3‑dehydrogenase |
Only 100 of 146 total aligned reads displayed.
CATGTCAGCGCCGACAATACAGCCATTAGAAAAACTGCCTATCGATTGTGCGCTACCCGGCACAGGTTG > REL606/2389827‑2389895 | tatggattatgatgatctacagatataaaaaaccc < 1:11014321‑M1/1‑1 (MQ=255) caTGTCAGCGCCGACAATACAGCCATTAGAAAAAc > 1:12103287/1‑35 (MQ=255) caTGTCAGCGCCGACAATACAGCCATTAGAAAAAc > 1:18920462/1‑35 (MQ=255) atggattatgatgatctacagatataaaaaaccCt < 1:14612537‑M1/2‑1 (MQ=255) atggattatgatgatctacagatataaaaaaccCt > 1:8292859‑M1/34‑35 (MQ=255) aTGTCAGCGCCGACAATACAGCCATTAGAAAAACt > 1:6032362/1‑35 (MQ=255) aTGTCAGCGCCGACAATACAGCCATTAGAAAAACt > 1:6189891/1‑35 (MQ=255) aTGTCAGCGCCGACAATACAGCCATTAGAAAAACt > 1:7925833/1‑35 (MQ=255) aTGTCAGCGCCGACAATACAGCCATTAGAAAAACt > 1:329813/1‑35 (MQ=255) tGTCAGCGCCGACAATACAGCCATTAGAAAAACTg > 1:5170339/1‑35 (MQ=255) ggattatgatgatctacagatataaaaaaccCTGc < 1:12556240‑M1/4‑1 (MQ=255) ggattatgatgatctacagatataaaaaaccCTGc < 1:9650920‑M1/4‑1 (MQ=255) ggattatgatgatctacagatataaaaaaccCTGc > 1:16550907‑M1/32‑35 (MQ=255) gTCAGCGCCGACAATACAGCCATTAGAAAAACTGc > 1:19775958/1‑35 (MQ=255) gTCAGCGCCGACAATACAGCCATTAGAAAAACTGc > 1:15927949/1‑35 (MQ=255) cAGCGCCGACAATACAGCCATTAGAAAAACTGCCt > 1:10312215/1‑35 (MQ=255) cAGCGCCGACAATACAGCCATTAGAAAAACTGCCt > 1:1130606/1‑35 (MQ=255) cAGCGCCGACAATACAGCCATTAGAAAAACTGCCt > 1:18869335/1‑35 (MQ=255) cAGCGCCGACAATACAGCCATTAGAAAAACTGCCt > 1:4195794/1‑35 (MQ=255) aGCGCCGACAATACAGCCATTAGAAAAACTGCCTa > 1:5487304/1‑35 (MQ=255) gcgcCGACAATACAGCCATTAGAAAAACTGCCTAt > 1:10061431/1‑35 (MQ=255) cgcCGACAATACAGCCATTAGAAAAACTGCCTATc > 1:5455560/1‑35 (MQ=255) gcCGACAATACAGCCATTAGAAAAACTGCCTATCg > 1:15734069/1‑35 (MQ=255) gcCGACAATACAGCCATTAGAAAAACTGCCTATCg > 1:17269634/1‑35 (MQ=255) gcCGACAATACAGCCATTAGAAAAACTGCCTATCg > 1:5725836/1‑35 (MQ=255) gcCGACAATACAGCCATTAGAAAAACTGCCTATCg > 1:2080249/1‑35 (MQ=255) gcCGACAATACAGCCATTAGAAAAACTGCCTATCg > 1:12185392/1‑35 (MQ=255) ccGACAATACAGCCATTAGAAAAACTGCCTATCGa > 1:16005296/1‑35 (MQ=255) cGACAATACAGCCATTAGAAAAACTGCCTATCGAt > 1:4374028/1‑35 (MQ=255) cGACAATACAGCCATTAGAAAAACTGCCTATCGAt > 1:13025551/1‑35 (MQ=255) aCAATACAGCCATTAGAAAAACTGCCTATCGATtg > 1:13748703/1‑35 (MQ=255) aCAATACAGCCATTAGAAAAACTGCCTATCGATtg > 1:6280791/1‑35 (MQ=255) cAATACAGCCATTAGAAAAACTGCCTATCGATtgt > 1:2374018/1‑35 (MQ=255) aaTACAGCCATTAGAAAAACTGCCTATCGATtgtg > 1:18175281/1‑35 (MQ=255) aTACAGCCATTAGAAAAACTGCCTATCGATTGTgc > 1:6284289/1‑35 (MQ=255) aTACAGCCATTAGAAAAACTGCCTATCGATTGTgc > 1:12783517/1‑35 (MQ=255) tACAGCCATTAGAAAAACTGCCTATCGATTGTgcg > 1:4241207/1‑35 (MQ=255) tACAGCCATTAGAAAAACTGCCTATCGATTGTgcg > 1:14610739/1‑35 (MQ=255) tACAGCCATTAGAAAAACTGCCTATCGATTGTgcg > 1:2661799/1‑35 (MQ=255) tACAGCCATTAGAAAAACTGCCTATCGATTGTgcg > 1:8009810/1‑35 (MQ=255) tACAGCCATTAGAAAAACTGCCTATCGATTGTgcg > 1:2662007/1‑35 (MQ=255) cccAGCCATTAAAAAACCTGCCTATCGATTGTgcg < 1:5525167/33‑1 (MQ=25) cacccATAAAAAAACCTGCCTATCGATTGTGCGCt < 1:10082031/32‑1 (MQ=16) cacccATAAAAAAACCTGCCTATCGATTGTGCGCt < 1:3918578/32‑1 (MQ=16) cAGCCATTAGAAAAACTGCCTATCGATTGTGCGCt > 1:19930411/1‑35 (MQ=255) cAGCCATTAGAAAAACTGCCTATCGATTGTGCGCt > 1:9261824/1‑35 (MQ=255) cAGCCATTAGAAAAACTGCCTATCGATTGTGCGCt > 1:10724918/1‑35 (MQ=255) cAGCCATTAGAAAAACTGCCTATCGATTGTGCGCt > 1:8358806/1‑35 (MQ=255) aGCCATTAGAAAAACTGCCTATCGATTGTGCGCTa > 1:19697641/1‑35 (MQ=255) ccataaaaaaccCTGCCTATCGATTGTGCGCTAcc > 1:16829145‑M1/13‑35 (MQ=255) ccATTAGAAAAACTGCCTATCGATTGTGCGTTAcc > 1:11104833/1‑35 (MQ=255) aaaaaaaaaccCTGCCTATCGATTGTGCGCTAccc > 1:6828270‑M1/12‑35 (MQ=255) ataagaaaccCTGCCTATCGATTGTGCGCTACCCg > 1:18057451‑M1/11‑35 (MQ=255) ttAGAAAAACTGCCTATCGATTGTGCGCTACCCgg > 1:10554736/1‑35 (MQ=255) ttAGAAAAACTGCCTATCGATTGTGCGCTACCCgg > 1:5060970/1‑35 (MQ=255) ttAGAAAAACTGCCTATCGATTGTGCGCTACCCgg > 1:11201299/1‑35 (MQ=255) ttAAAAAACCTGCCTATCGATTGTGCGCTACCCgg < 1:3826061/35‑1 (MQ=38) taaaaaaccCTGCCTATCGATTGTGCGCTACCCgg > 1:4856770‑M1/10‑35 (MQ=255) taaGAAAACCTGCCTATCGATTGTGCGCTACCCgg < 1:9789919/33‑1 (MQ=255) tAGAAAAACTGCCTATCGATTGTGCGCTACCCGGc > 1:8844647/1‑35 (MQ=255) aaaaaaccCTGCCTATCGATTGTGCGCTACCCGGc > 1:7478569‑M1/9‑35 (MQ=255) aaaaaaccCTGCCTATCGATTGTGCGCTACCCGGc > 1:2873065‑M1/9‑35 (MQ=255) aaaaaaccCTGCCTATCGATTGTGCGCTACCCGGc > 1:16799864‑M1/9‑35 (MQ=255) aaaaaccCTGCCTATCGATTGTGCGCTACCCGGca > 1:9423415‑M1/8‑35 (MQ=255) aGAAAAACTGCCTATCGATTGTGCGCTACCCGGca > 1:14187199/1‑35 (MQ=255) aGAAAAACTGCCTATCGATTGTGCGCTACCCGGca > 1:16073612/1‑35 (MQ=255) aGAAAAACTGCCTATCGATTGTGCGCTACCCGGca > 1:1167899/1‑35 (MQ=255) aGAAAAACTGCCTATCGATTGTGCGCTACCCGGca > 1:8460013/1‑35 (MQ=255) aGAAAAACTGCCTATCGATTGTGCGCTACCCGGca > 1:10266979/1‑35 (MQ=255) gAAAAACTGCCTATCGATAGTGCGCTACCCGGcac > 1:4989758/1‑35 (MQ=255) aaaaccCTGCCTATCGATTGTGCGCTACCCGGcac > 1:1201122‑M1/7‑35 (MQ=255) aaaaccCTGCCTATCGATTGTGCGCTACCCGGcac > 1:15037798‑M1/7‑35 (MQ=255) aaaccCTGCCTATCGATTGTGCGCTACCCGGcaca > 1:3633388‑M1/6‑35 (MQ=255) aaaccCTGCCTATCGATTGTGCGCTACCCGGcaca > 1:713771‑M1/6‑35 (MQ=255) aaccCTGCCTATCGATTGTGCGCTACCCGGCACAg > 1:18615384‑M1/5‑35 (MQ=255) aaccCTGCCTATCGATTGTGCGCTACCCGGCACAg > 1:288221‑M1/5‑35 (MQ=255) aaacCTGCCTATCGATTGTGCGCTACCCGGCACAg > 1:8843388‑M1/5‑35 (MQ=255) aaaaCTGCCTATCGATTGTGCGCTACCCGGCACAg > 1:1230399/1‑35 (MQ=255) aaaaCTGCCTATCGATTGTGCGCTACCCGGCACAg > 1:3198735/1‑35 (MQ=255) aaaaCTGCCTATCGATTGTGCGCTACCCGGCACAg > 1:4785673/1‑35 (MQ=255) accCTGCCTATCGATTGTGCGCTACCCGGCACAgg > 1:18780219‑M1/4‑35 (MQ=255) aaaCTGCCTATCGATTGTGCGCTACCCGGCACAgg > 1:10458914/1‑35 (MQ=255) gaCTGCCTATCGATTGTGCGCTACCCGGCACAGGt > 1:15327770/2‑35 (MQ=255) ccCTGCCTATCGATTGTGCGCTACCCGGCACAGGt > 1:16658529‑M1/3‑35 (MQ=255) ccCTGCCTATCGATTGTGAGCTACCCGGCACAGGt > 1:4394880‑M1/3‑35 (MQ=255) aaCTGCCTATCGATTGTGCGCTACCCGGCACAGGt > 1:1511692/1‑35 (MQ=255) aaCTGCCTATCGATTGTGCGCTACCCGGCACAGGt > 1:15213365/1‑35 (MQ=255) aaCTGCCTATCGATTGTGCGCTACCCGGCACAGGt > 1:75150/1‑35 (MQ=255) cCTGCCTATCGATTGTGCGCTACCCGGCACAGGtt > 1:16951609‑M1/2‑35 (MQ=255) aCTGCCTATCGATTGTGCGCTACCCGGCACAgggt > 1:5557172/1‑33 (MQ=255) aCTGCCTATCGATTGTGCGCTACCCGGCACAGGtt < 1:11662597/35‑1 (MQ=255) aCTGCCTATCGATTGTGCGCTACCCGGCACAGGtt > 1:13273474/1‑35 (MQ=255) aCTGCCTATCGATTGTGCGCTACCCGGCACAGGtt > 1:8638348/1‑35 (MQ=255) CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg < 1:10396417‑M1/35‑1 (MQ=255) CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg < 1:10006172‑M1/35‑1 (MQ=255) CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg < 1:17478388‑M1/35‑1 (MQ=255) CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg > 1:8759071‑M1/1‑35 (MQ=255) CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg < 1:10885735‑M1/35‑1 (MQ=255) CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg > 1:1188650‑M1/1‑35 (MQ=255) CTGCCTATCGATTGTGCGCTACCCGGCACAGGTTg < 1:5750520‑M1/35‑1 (MQ=255) | CATGTCAGCGCCGACAATACAGCCATTAGAAAAACTGCCTATCGATTGTGCGCTACCCGGCACAGGTTG > REL606/2389827‑2389895 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |