New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1157306 =35 (0.340)4 (0.050) 4/38 NT 11.3% coding (1631/3186 nt) rne fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein
?REL606 = 1452435 35 (0.430)intergenic (‑244/‑14) acpD/hrpA acyl carrier protein phosphodiesterase/ATP‑dependent helicase

CTTTGCCATGCCGGATGTGCCGCCAGCGCCAACCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1157344‑1157306
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcCGCTGCTGCAAGGCCGTAAAGGTCAATTTTTGTT  <  REL606/1452435‑1452402
                                                                         
CTTTGCCATGCCGGATGTGCCGCCAGCGCCAACCC                                        >  1:7541091/1‑35
 TTTGCCATGCCGGATGTGCCGCCAGCGCCAACCCC                                       >  1:10282812/1‑35
 TTTGCCATGCCGGATGTGCCGCCAGCGCCAACCCC                                       >  1:10613217/1‑35
  TTGCCATGCCGGATGTGCCGCCAGCGCCAACCCCA                                      >  1:12330622/1‑35
   TGCCATGCCGGATGTGCCGCCAGCGCCAACCCCAG                                     >  1:15658197/1‑35
    GCCATGCCGGATGTGCCGCCAGCGCCAACCCCAGC                                    >  1:12496766/1‑35
                     GCCACCGCCAACCCCAGCCGCTGCTGCAAGGCCGT                   <  1:19635032/35‑1
                      CCACCGCCAACCCCAGCCGCTGCTGCAAGGCCGTA                  <  1:1348160/35‑1
                       CAGCGCCACCCCCAGCCGCTGCTGCAAGGCCGTAA                 <  1:8612109/35‑1
                          cagCAACCCCAGCCGCTGCTGCAAGGCCGTAAAGG              <  1:9022777/32‑1
                          CGCCAACCCCAGCCGCTGCTGCAAGGCCGTAAAGG              <  1:5710349/35‑1
                              gaaCCCAGCCGCTGCTGCAAGGCCGTAAAGGTCAA          <  1:6950465/32‑1
                              AACCCCAGCCGCTGCTGCAAGGCCGTAAAGGTCAA          <  1:11632577/35‑1
                              AACCCCAGCCGCTGCTGCAAGGCCGTAAAGGTCAA          <  1:14829150/35‑1
                              AACCCCAGCCGCTGCTGCAAGGCCGTAAAGGTCAA          <  1:20529202/35‑1
                               cCCCCAGCCGCTGCTGCAAGGCCGTAAAGGTCAAT         <  1:14297942/34‑1
                               ACCCCAGCCGCTGCTGCAAGGCCGTAAAGGTCAAT         <  1:12833508/35‑1
                               ACCCCAGCCGCTGCTGCAAGGCCGTAAAGGTCAAT         <  1:7036638/35‑1
                               ACCCCAGCCGCTGCTGCAAGGCCGTAAAGGTCAAT         <  1:2050457/35‑1
                                CCCCAGCCGCTGCTGCAAGGCCGTAAAGGTCAATT        <  1:8571796/35‑1
                                CCCCAGCCGCTGCTGCAAGGCCGTAAAGGTCAATT        <  1:11749525/35‑1
                                 CCCAGCCGCTGCTGCAAGGCCGTAAAGGTCAATTT       <  1:10837843/35‑1
                                 CCCAGCCGCTGCTGCAAGGCCGTAAAGGTCAATTT       <  1:20085705/35‑1
                                  CCAGCCGCTGCTGCAAGGCCTTAAAGGTCAATTTT      >  1:3542467/1‑35
                                  CCAGCCGCTGCTGCAAGGCCGTAAAGGTCAATTTT      <  1:3459593/35‑1
                                  CCAGCCGCTGCTGCAAGGCCGTAAAGGTCAATTTT      <  1:5563369/35‑1
                                  CCAGCCGCTGCTGCAAGGCCGTAAAGGTCAATTTT      <  1:8519525/35‑1
                                   cacCCGCTGCTGCAAGGCCGTAAAGGTCAATTTTT     <  1:3891892/32‑1
                                   CAGCCGCTGCTGCAAGGCCGTAAAGGTCAATTTTT     >  1:18472557/1‑35
                                    AGCCGCTGCTGCAAGGCCGTAAAGGTCAATTTTTG    >  1:6516239/1‑35
                                     cCCGCTGCTGCAAGGCCGTAAAGGTCAATTTTTGT   <  1:15746550/34‑1
                                     GCCGCTGCTGCAAGGCCGTAAAGGTCAATTTTTGT   >  1:1735460/1‑35
                                     GCCGCTGCTGCAAGGCCGTAAAGGTCAATTTTTGT   <  1:11480904/35‑1
                                      CCGCTTCTGCAAGGCCGTAAAGGTCAATTTTTGTT  <  1:6379086/35‑1
                                      CCGCTGCTGCAAGGCCGTAAAGGTCAATTTTTGTT  <  1:18406681/35‑1
                                      CCGCTGCTGCAAGGCCGTAAAGGTCAATTTTTGTT  <  1:7121499/35‑1
                                      CCGCTGCTGCAAGGCCGTAAAGGTCAATTTTTGTT  >  1:5939704/1‑35
                                      CCGCTGCTGCAAGGCCGTAAAGGTCAATTTTTGTT  <  1:11566845/35‑1
                                      CCGCTGCTGCAAGGCCGTAAAGGTCAATTTTTGTT  >  1:19163935/1‑35
                                                                         
CTTTGCCATGCCGGATGTGCCGCCAGCGCCAACCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1157344‑1157306
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcCGCTGCTGCAAGGCCGTAAAGGTCAATTTTTGTT  <  REL606/1452435‑1452402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.