New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 965820 =63 (0.610)8 (0.100) 3/36 NT 12.3% coding (842/909 nt) ycaN predicted DNA‑binding transcriptional regulator
?REL606 4368357 = 67 (0.870)coding (159/969 nt) psd phosphatidylserine decarboxylase

AGATCTATTATCCAAACCGCCAGTATATGTCCTGCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/965859‑965820
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcttTTGCGCCTCTTTCATGTCGACCTTGTAGTATTTA  >  REL606/4368357‑4368390
                                                                          
AGATCTATTATCCAAACCGCCAGTATATGTCCTGC                                         >  1:20251880/1‑35
AGATCTATTATCCAAACCGCCAGTATATGTCCTGC                                         >  1:12035259/1‑35
AGATCTATTATCCAAACCGCCAGTATATGTCCTGC                                         >  1:6884102/1‑35
AGATCTATTATCCAAACCGCCAGTATATGTCCTGC                                         >  1:5560888/1‑35
 GATCTATTATCCAAACCGCCAGTATATGTCCTGCG                                        >  1:16937850/1‑35
 GATCTATTATCCAAACCGCCAGTATATGTCCTGCG                                        >  1:4445385/1‑35
  ATCTATTATCCAAACCGCCAGTATATGTCCTGCGG                                       >  1:11123138/1‑35
  ATCTATTATCCAAACCGCCAGTATATGTCCTGCGG                                       >  1:18954004/1‑35
   TCTATTATCCAAACCGCCAGTATATGTCCTGCGGC                                      >  1:20050638/1‑35
   TCTATTATCCAAACCGCCAGTATATGTCCTGCGGC                                      >  1:2863596/1‑35
   TCTATTATCCAAACCGCCAGTATATGTCCTGCGGC                                      >  1:15426167/1‑35
    CTATTATCCAAACCGCCAGTATATGTCCTGCTGCT                                     >  1:10641347/1‑35
    CTATTATCCAAACCGCCAGTATATGTCCTGCGGCT                                     >  1:14875661/1‑35
    CTATTATCCAAACCGCCAGTATATGTCCTGCGGCT                                     >  1:6883408/1‑35
     cATTATCCAAACCGCCAGTATATGTCCTGCGGCTT                                    >  1:3923526/2‑35
     TATTATCCAAACCGCCAGTATATGTCCTGCGGCTT                                    >  1:18956569/1‑35
      ATTATCCAAACCGCCAGTATATGTCCTGCGGCTTT                                   >  1:18079915/1‑35
       TTATCCAAACCGCCAGTATATGTCCTGCGGCTTTc                                  >  1:18722112/1‑34
       TTATCCAAACCGCCAGTATATGTCCTGCGGCTTTc                                  >  1:8414567/1‑34
       TTATCCAAACCGCCAGTATATGTCCTGCGGCTTTc                                  >  1:11095950/1‑34
       TTATCCAAACCGCCAGTATATGTCCTGCGGCTTTT                                  >  1:2465835/1‑35
        TATCCAAACCGCCAGTATATGTCCTGCGGCTTTct                                 >  1:5180403/1‑33
         ATCCAAACCGCCAGTATATGTCCTGCGGCTTTTGC                                >  1:19381389/1‑35
          TCCAAACCGCCAGTATATGTCCTGCGGCTTTTtgg                               >  1:10304671/1‑32
           CCAAACCGCCAGTATATGTCCTGCGGCTTTTGCGC                              >  1:9518936/1‑35
           CCAAACCGCCAGTATATGTCCTGCGGCTTTCGCGC                              >  1:20255089/1‑35
           CCAAACCGCCAGTATATGTCCTGCGGCTTTCGCGC                              >  1:20457489/1‑35
             nAACCGCCAGTATATGTCCTGCGGCTTTCGCGCCT                            >  1:13800169/2‑35
             AAACCGCCAGTATATGTCCTGCGGCTTTTGCGCac                            >  1:20581101/1‑33
             AAACCGCCAGTATATGTCCTGCGGCTTTTGCGCCT                            >  1:6796313/1‑35
              AACCGCCAGTATATGTCCTGCGGCTTTTGCGCCTt                           >  1:12420255/1‑34
                 CGCCAGTATATGTCCTGCGGCTTTTGCGCCTTTTT                        >  1:17356075/1‑35
                                  CGGCTTTTGCGCCTCTTTCATGTCGACCTTGTAGT       <  1:20261962/35‑1
                                  CGGCTTTTGCGCCTCTTTCATGTCGACCTTGTAGT       <  1:9618895/35‑1
                                   GGCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTA      >  1:6267962/1‑35
                                   GGCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTA      <  1:562870/35‑1
                                   GGCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTA      <  1:11862604/35‑1
                                   GGCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTA      >  1:8949337/1‑35
                                   GGCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTA      >  1:11107968/1‑35
                                   GGCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTA      <  1:9929005/35‑1
                                   GGCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTA      >  1:17621226/1‑35
                                   GGCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTA      <  1:17307882/35‑1
                                   GGCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTA      >  1:3069053/1‑35
                                    GCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTAT     >  1:3818381/1‑35
                                    GCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTAT     >  1:4150885/1‑35
                                    GCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTAT     <  1:9529974/35‑1
                                    GCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTAT     <  1:6140366/35‑1
                                    GCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTAT     >  1:165911/1‑35
                                    GCTTTTGCGCCTCTTTCATGTCGACCTTGTAGTAT     >  1:20048415/1‑35
                                    GCTTCTGCGCCTCTTTCATGTCGACCTTGTAGTAT     >  1:7668851/1‑35
                                     CTTTTGCGCCTCTTTCATGTCGACCTTGTAGTATT    <  1:2395009/35‑1
                                     CTTTTGCGCCTCTTTCATGTCGACCTTGTAGTATT    >  1:4617083/1‑35
                                     CTTTTGCGCCTCTTTCATGTCGACCTTGTAGTATT    <  1:2256643/35‑1
                                      TTTTGCGCCTCTTTCATGTCGACCTTGTAGTATTT   <  1:7746128/35‑1
                                      TTTTGCGCCTCTTTCATGTCGACCTTGTAGTATTT   <  1:6951215/35‑1
                                      TTTTGCGCCTCTTTCATGTCGACCTTGTAGTATTT   <  1:6942596/35‑1
                                      TTTTGCGCCTCTTTCATGTCGACCTTGTAGTATTT   >  1:14292668/1‑35
                                      TTTTGCGCCTCTTTCATGTCGACCTTGTAGTATTT   >  1:16026027/1‑35
                                      TTTTGCGCCTCTTTCATGTCGACCTTGTAGTATTT   >  1:3674665/1‑35
                                      TTTTGCGCCTCTTTCATGTCGACCTTGTAGTATTT   >  1:16756620/1‑35
                                      TTTTGCGCCTCTTTCATGTCGACCTTGTAGTATTT   >  1:16971573/1‑35
                                       TTTGCGCCTCTTTCATGTCGACCTTGTAGTATTTA  <  1:13327033/35‑1
                                       TTTGCGCCTCTTTCATGTCGACCTTGTAGTATTTA  >  1:16211316/1‑35
                                       TTTGCGCCTCTTTCATGTCGACCTTGTAGTATTTA  <  1:3750782/35‑1
                                       TTTGCGCCTCTTTCATGTCGACCTTGTAGTATTTA  <  1:3189605/35‑1
                                       TTTGCGCCTCTTTCATGTCGACCTTGTAGTATTTA  >  1:19858420/1‑35
                                                                          
AGATCTATTATCCAAACCGCCAGTATATGTCCTGCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/965859‑965820
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcttTTGCGCCTCTTTCATGTCGACCTTGTAGTATTTA  >  REL606/4368357‑4368390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.