Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,152,406 | A→C | 21.7% | K41N (AAA→AAC) | ygjG → | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,152,406 | 0 | A→C | 21.7% | 118.3 ‑0.3 ‑0.2 | 171 | K41N (AAA→AAC) | ygjG | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
Reads supporting (aligned to +/- strand): new base (16/21): ref base (63/71): total (79/92) | ||||||||||
Fisher's exact test strand distribution p-value = 7.13e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.88e-01 |
Only 100 of 185 total aligned reads displayed.
TTGAGAAGCGAACGCTGGATCATGAGGAGATGAAAGCACTTAACCGAGAGGTGATTGAATACTTCAAAG > REL606/3152372‑3152440 | tGAGAAGCGAACGCTGGATCATGAGGAGATGAAAg > 1:20099457/1‑35 (MQ=255) tGAGAAGCGAACGCTGGATCATGAGGAGATGAAAg < 1:1334289/35‑1 (MQ=255) gagaAGCGAACGCTGGATCATGAGGAGATGAACGc < 1:8995197/35‑1 (MQ=255) gagaAGCGAACGCTGGATCATGAGGAGATGAAAGc > 1:3866883/1‑35 (MQ=255) gagaAGCGAACGCTGGATCATGAGGAGATGAAAGc < 1:19816295/35‑1 (MQ=255) gagaAGCGAACGCTGGATCATGAGGAGATGAAAGc < 1:8193061/35‑1 (MQ=255) agaAGCGAACGCTGGATCATGAGGAGATGAACGCa < 1:18682840/35‑1 (MQ=255) agaAGCGAACGCTGGATCATGAGGAGATGAAAGCa > 1:6937796/1‑35 (MQ=255) agaAGCGAACGCTGGATCATGAGGAGATGAAAGCa < 1:18628238/35‑1 (MQ=255) agaAGCGAACGCTGGATCATGAGGAGATGAAAGCa < 1:1781979/35‑1 (MQ=255) gaAGCGAACGCTGGATCATGAGGAGATGAAAGCAc < 1:6337725/35‑1 (MQ=255) gaAGCGAACGCTGGATCATGAGGAGATGAAAGCAc > 1:17965843/1‑35 (MQ=255) aaGCGAACGCTGGATCATGAGGAGATGAACGCACt > 1:11003341/1‑35 (MQ=255) aGCGAACGCTGGATCATGAGGAGATGAAAGCACtt < 1:2177121/35‑1 (MQ=255) aGCGAACGCTGGATCATGAGGAGATGAAAGCACtt < 1:8748191/35‑1 (MQ=255) aGCGAACGCTGGATCATGAGGAGATGAAAGCACtt < 1:11013591/35‑1 (MQ=255) aGCGAACGCTGGATCATGAGGAGATGAAAGCACtt < 1:19154066/35‑1 (MQ=255) gCGAACGCTGGATCATGAGGAGATGAAAGCACTTa > 1:8712088/1‑35 (MQ=255) cGAACGCTGGATCATGAGGAGATGAAAGCACTTaa > 1:10366821/1‑35 (MQ=255) cGAACGCTGGATCATGAGGAGATGAAAGCACTTaa < 1:8445481/35‑1 (MQ=255) cGAACGCTGGATCATGAGGAGATGAAAGCACTTaa < 1:18218699/35‑1 (MQ=255) cGAACGCTGGATCATGAGGAGATGAAAGCACTTaa < 1:14008781/35‑1 (MQ=255) gAACGCTGGATCATGAGGAGATGAAAGCACTTAAc < 1:19467639/35‑1 (MQ=255) aaCGCTGGATCATGAGGAGATGAACGCACTTAAcc > 1:9187481/1‑35 (MQ=255) aCGCTGGATCATTAGGAGATGAAAGCACTTAACCg > 1:5272270/1‑35 (MQ=255) aCGCTGGATCATGAGGAGATGAACGCACTTAACCg > 1:11037351/1‑35 (MQ=255) aCGCTGGATCATGAGGAGATGAAAGCACTTAACCg < 1:19394041/35‑1 (MQ=255) aCGCTGGATCATGAGGAGATGAAAGCACTTAACCg > 1:13037650/1‑35 (MQ=255) cGCTGGATCATGAGGAGATGAAAGCACTTAACCga < 1:6997052/35‑1 (MQ=255) cGCTGGATCATGAGGAGATGAAAGCACTTAACCga < 1:17024800/35‑1 (MQ=255) cGCTGGATCATGAGGAGATGAAAGCACTTAACCga < 1:9674233/35‑1 (MQ=255) gCTGGATCATGAGGAGATGAACGCACTTAACCgag < 1:1645349/35‑1 (MQ=255) gCTGGATCATGAGGAGATGAAAGCACTTAACCgag < 1:657431/35‑1 (MQ=255) gCTGGATCATGAGGAGATGAAAGCACTTAACCgag > 1:10674813/1‑35 (MQ=255) gCTGGATCATGAGGAGATGAAAGCACTTAACCgag > 1:10217163/1‑35 (MQ=255) gCTGGATCATGAGGAGATGAAAGCACTTAACCgag > 1:4050183/1‑35 (MQ=255) gCTGGATCATGAGGAGATGAAAGCACTTAACCgag > 1:2330273/1‑35 (MQ=255) cTGGATCATGAGGAGATGAAAGCACTTAACCgaga < 1:3807351/35‑1 (MQ=255) cTGGATCATGAGGAGATGAAAGCACTTAACCgaga < 1:2150064/35‑1 (MQ=255) tGGATCATGAGGAGATGAAAGCACTTAACCGagag > 1:13922976/1‑35 (MQ=255) tGGATCATGAGGAGATGAAAGCACTTAACCGagag > 1:7665540/1‑35 (MQ=255) ggATCATGAGGAGATGAAAGCACTTAACCGAGAgg > 1:5786728/1‑35 (MQ=255) ggATCATGAGGAGATGAAAGCACTTAACCGAGAgg > 1:11328258/1‑35 (MQ=255) ggATCATGAGGAGATGAAAGCACTTAACCGAGAgg < 1:16008952/35‑1 (MQ=255) ggATCATGAGGAGATGAAAGCACTTAACCGAGAgg > 1:16096211/1‑35 (MQ=255) gATCATGAGGAGATGAACGCACTTAACCGAGAGGt < 1:14216623/35‑1 (MQ=255) gATCATGAGGAGATGAACGCACTTAACCGAGAGGt > 1:9019225/1‑35 (MQ=255) gATCATGAGGAGATGAACGCACTTAACCGAGAGGt > 1:13279668/1‑35 (MQ=255) gATCATGAGGAGATGAAAGCACTTAACCGAGAGGt > 1:15337964/1‑35 (MQ=255) aTCATGAGGAGATGAAAGCACTTAACCGAGAGGTg > 1:150555/1‑35 (MQ=255) aTCATGAGGAGATGAAAGCACTTAACCGAGAGGTg < 1:7710883/35‑1 (MQ=255) tCATGAGGAGATGAAAGCACTTAACCGAGAGGTGa < 1:16225624/35‑1 (MQ=255) cATGAGGAGATGAAAGCACTTAACCGAGAGGTTAt > 1:14799251/1‑35 (MQ=255) cATGAGGAGATGAAAGCACTTAACCGAGAGGTGAt < 1:9738300/35‑1 (MQ=255) cATGAGGAGATGAAAGCACTTAACCGAGAGGTGAt > 1:20479187/1‑35 (MQ=255) cATGAGGAGATGAAAGCACTTAACCGAGAGGTGAt > 1:4215041/1‑35 (MQ=255) cATGAGGAGATGAAAGCACTTAACCGAGAGGTGAt > 1:2792708/1‑35 (MQ=255) aTGAGGAGATGAACGCACTTAACCGAGAGGTGAtt < 1:17483087/35‑1 (MQ=255) aTGAGGAGATGAACGCACTTAACCGAGAGGTGAtt < 1:2436164/35‑1 (MQ=255) aTGAGGAGATGAACGCACTTAACCGAGAGGTGAtt < 1:4338440/35‑1 (MQ=255) aTGAGGAGATGAACGCACTTAACCGAGAGGTGAtt < 1:17098952/35‑1 (MQ=255) aTGAGGAGATGAAAGCACTTAACCGAGAGGTGAtt < 1:6002433/35‑1 (MQ=255) aTGAGGAGATGAAAGCACTTAACCGAGAGGTGAtt < 1:15173662/35‑1 (MQ=255) tGAGGAGATGAACGCACTTAACCGAGAGGTGATTg < 1:12457515/35‑1 (MQ=255) tGAGGAGATGAAAGCACTTAACCGAGATGTGATTg > 1:4372375/1‑35 (MQ=255) tGAGGAGATGAAAGCACTTAACCGAGAGGTGATTg < 1:16646011/35‑1 (MQ=255) gaggagATGAACGCACTTAACCGAGAGGTGATTGa > 1:4761066/1‑35 (MQ=255) gaggagATGAAAGCACTTAACCGAGAGGTGATTGa < 1:19096914/35‑1 (MQ=255) gaggagATGAAAGCACTTAACCGAGAGGTGATTGa < 1:12214134/35‑1 (MQ=255) gaggagATGAAAGCACTTAACCGAGAGGTGATTGa < 1:2659549/35‑1 (MQ=255) aggagATGAAAGCACTTAACCGAGAGGTGATTGaa < 1:6403629/35‑1 (MQ=255) aggagATGAAAGCACTTAACCGAGAGGTGATTGaa < 1:19902381/35‑1 (MQ=255) ggagATGAAAGCACTTAACCGAGAGGTGATTGAAt < 1:14509307/35‑1 (MQ=255) ggagATGAAAGCACTTAACCGAGAGGTGATTGAAt < 1:17166712/35‑1 (MQ=255) ggagATGAAAGCACTTAACCGAGAGGTGATTGAAt > 1:11512589/1‑35 (MQ=255) gagaTGAACGCACTTAACCGAGAGGTGATTGAATa < 1:3414001/35‑1 (MQ=255) gagaTGAACGCACTTAACCGAGAGGTGATTGAATa < 1:857097/35‑1 (MQ=255) gagaTGAAAGCACTTAACCGAGAGGTGATTGAATa > 1:17056612/1‑35 (MQ=255) agaTGAACGCACTTAACCGAGAGGTGATTGAATAc > 1:3483703/1‑35 (MQ=255) agaTGAACGCACTTAACCGAGAGGTGATTGAATAc < 1:4975838/35‑1 (MQ=255) gaTGAAAGCACTTAACCGAGAGGTGATTGAATACt > 1:12964379/1‑35 (MQ=255) gaTGAAAGCACTTAACCGAGAGGTGATTGAATACt < 1:17300109/35‑1 (MQ=255) gaTGAAAGCACTTAACCGAGAGGTGATTGAATACt < 1:18117984/35‑1 (MQ=255) aTGAACGCACTTAACCGAGAGGTGATTGAATACtt > 1:12098091/1‑35 (MQ=255) aTGAAAGCACTTAACCGAGAGGTGATTGAATACtt > 1:5574378/1‑35 (MQ=255) aTGAAAGCACTTAACCGAGAGGTGATTGAATACtt < 1:1886965/35‑1 (MQ=255) aTGAAAGCACTTAACCGAGAGGTGATTGAATACtt < 1:17902617/35‑1 (MQ=255) aTGAAAGCACTTAAACGAGAGGTGATTGAATACtt < 1:3669890/35‑1 (MQ=255) tGAAAGCACTTAACCGAGAGGTGATTGAATACTTc < 1:3042874/35‑1 (MQ=255) tGAAAGCACTTAACCGAGAGGTGATTGAATACTTc < 1:14827431/35‑1 (MQ=255) gAAAGCACTTAACCGAGAGGTGATTGAATACTTCa < 1:5006801/35‑1 (MQ=255) gAAAGCACTTAACCGAGAGGTGATTGAATACTTCa > 1:18216735/1‑35 (MQ=255) gAAAGCACTTAACCGAGAGGTGATTGAATACTTCa > 1:17462022/1‑35 (MQ=255) gAAAGCACTTAACCGAGAGGTGATTGAATACTTCa > 1:14249282/1‑35 (MQ=255) gAAAGCACTTAACCGAGAGGTGATTGAATACTTCa < 1:11776259/35‑1 (MQ=255) gAAAGCACTTAACCGAGAGGTGATTGAATACTTCa < 1:10610035/35‑1 (MQ=255) aaaGCACTTAACCGAGAGGTGATTGAATACTTCaa > 1:5317306/1‑35 (MQ=255) aaaGCACTTAACCGAGAGGTGATTGAATACTTCaa > 1:15681077/1‑35 (MQ=255) aaGCACTTAACCGAGAGGTGATTGAATACTTCaaa > 1:10544017/1‑35 (MQ=255) aaGCACTTAACCGAGAGGTGATTGAATACTTCaaa < 1:10215607/35‑1 (MQ=255) | TTGAGAAGCGAACGCTGGATCATGAGGAGATGAAAGCACTTAACCGAGAGGTGATTGAATACTTCAAAG > REL606/3152372‑3152440 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |