New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3265224 =32 (0.310)6 (0.070) 3/38 NT 9.0% coding (1028/1434 nt) dacB D‑alanyl‑D‑alanine carboxypeptidase
?REL606 = 3603631 96 (1.180)coding (778/1014 nt) yhjD conserved inner membrane protein

CATCGGCAATAATGGTGTTTCCAATATCGACACCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3265262‑3265224
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcttTTTTGCGCGGACGGTGGCGCGGCAACCGCCAGAA  <  REL606/3603631‑3603598
                                                                         
CATCGGCAATAATGGTGTTTCCAATATCGACACCG                                        >  1:10978482/1‑35
CATCGGCAATAATGGTGTTTCCAATATCGACACCG                                        >  1:2705258/1‑35
CATCGGCAATAATGGTGTTTCCAATATCGACACCG                                        <  1:2683173/35‑1
CATCGGCAATAATGGTGTTTCCAATATCGACACCG                                        >  1:17649620/1‑35
CATCGGCAATAATGGTGTTTCCAATATCGACACCG                                        <  1:805633/35‑1
CATCGGCAATAATGGTGTTTCCAATATCGACACCG                                        <  1:13228075/35‑1
CATCGGCAATAATGGTGTTTCCAATATCGACACCG                                        >  1:4202118/1‑35
CATCGGCAATAATGGTGTTTCCAATATCGACACCG                                        >  1:13603953/1‑35
CATCGGCAATAATGGTGTTTCCAATATCGACACCG                                        <  1:5484177/35‑1
CATCGGCAATAATGGTGTTTCCAATATCGACACCG                                        <  1:16013952/35‑1
 ATCGGCAATAATGGTGTTTCCAATATCGACACCGG                                       <  1:4176393/35‑1
 ATCGGCAATAATGGTGTTTCCAATATCGACACCGG                                       <  1:202261/35‑1
  gCGGCAATAATGGTTTTTCCAATATCGACACCGGC                                      <  1:1866411/34‑1
  TCGGCAATAATGGTGTTTCCAATATCGACACCGGC                                      <  1:17229021/35‑1
   cgtCAATAATGGTGTTTCCAATATCGACACCGGCT                                     <  1:3047043/32‑1
   CGGCAATAATGGTGTTTCCAATATCGACACCGGCT                                     <  1:3809004/35‑1
   CGGCAATAATGGTGTTTCCAATATCGACACCGGCT                                     <  1:2269262/35‑1
   CGGCAATAATGGTGTTTCCAATATCGACACCGGCT                                     <  1:2579806/35‑1
   CGGCAATAATGGTGTTTCCAATATCGACACCGGCT                                     >  1:3189648/1‑35
   CGGCAATAATGGTGTTTCCAATATCGACACCGGCT                                     >  1:4091457/1‑35
   CGGCAATAATGGTGTTTCCAATATCGACACCGGCT                                     >  1:4457079/1‑35
   CGGCAATAATGGTGTTTCCAATATCGACACCGGCT                                     >  1:13824652/1‑35
   CGGCAATAATGGTGTTTCCAATATCGACACCGGCT                                     >  1:5879361/1‑35
   CGGCAATAATGGTGTTTCCAATATCGACACCGGCT                                     >  1:6092321/1‑35
   CGGCAATAATGGTGTTTCCAATATCGACACCGGCT                                     <  1:12164049/35‑1
    GGCAATAATGGTGTTTCCAATATCGACACCGGCTT                                    >  1:8366555/1‑35
    GGCAATAATGGTGTTTCCAATATCGACACCGGCTT                                    <  1:8708752/35‑1
    GGCAATAATGGTGTTTCCAATATCGACACCGGCTT                                    <  1:9058543/35‑1
    GGCAATAATGGTGTTTCCAATATCGACACCGGCTT                                    >  1:9672832/1‑35
    GGCAATAATGGTGTTTCCAATATCGACACCGGCTT                                    <  1:210777/35‑1
    GGCAATAATGGTGTTTCCAATATCGACACCGGCTT                                    >  1:10669520/1‑35
    GGCAATAATGGTGTTTCCAATATCGACACCGGCTT                                    >  1:17671002/1‑35
    GGCAATAATGGTGTTTCCAATATCGACACCGGCTT                                    <  1:12610426/35‑1
    GGCAATAATGGTGTTTCCAATATCGACAACGGCTT                                    <  1:7275202/35‑1
    GGCAATAACGGTGTTTCCAATATCGACACCGGCTT                                    <  1:1145561/35‑1
     GCAATAATTGTGTTTCCAATATCGACACCGGCTTT                                   >  1:4903020/1‑35
     GCAATAATGGTGTTTCCAATATCGACACCGGCTTT                                   >  1:6933148/1‑35
     GCAATAATGGTGTTTCCAATATCGACACCGGCTTT                                   >  1:5477107/1‑35
       AATAATGGTGTTTCCAATATCGACACCGGCTTaga                                 >  1:13594444/1‑32
       AATAATGGTGTTTCCAATATCGACACCGGCTTTTT                                 >  1:4955848/1‑35
        ATAATGGTGTTTCCAATATCGACACCGGCTTTctc                                >  1:14533975/1‑32
        ATAATGGTGTTTCCAATATCGACACCGGCTTTTTT                                >  1:17684407/1‑35
        ATAATGGTGTTTCCAATATCGACACCGGCTTTTTT                                >  1:7095330/1‑35
         TAATGGTGTTTCCAATATCGACACCGGCTTTTTgt                               >  1:13024536/1‑33
          AATGGTGTTTCCAATATCGACACCGGCTTTTTTGt                              >  1:7882598/1‑34
          AATGGTGTTTCCAATATCGACACCGGCTTTTTTGt                              >  1:7740324/1‑34
           ATGGTGTTTCCAATATCGACACCGGCTTTTTTGCG                             >  1:16740330/1‑35
            TGGTGTTTCCAATATCGACACCGGCTTTTTTGGGC                            >  1:4220874/1‑35
            TGGTGTTTCCAATATCGACACCGGCTTTTTTGCGC                            >  1:9190498/1‑35
             GGTGTTTCCAATATCGACACCGGCTTTTTTGGGCG                           >  1:720638/1‑35
             GGTGTTTCCAATATCGACACCGGCTTTTTTGCGCG                           >  1:4595640/1‑35
               TGTTTCCAATATCGACACCGGCTTTTTTGCGCacg                         >  1:10545634/1‑32
                                  GGCTTTTTTGCGCGGACGGTGGCGCGGCAAACGCC      >  1:4416670/1‑35
                                   GCTTTTTTGCGCGGACGGTGGCGCGGCAACCGCCA     >  1:8090311/1‑35
                                     TTTTTTGCGCGCACGGTGGCGCGGCAACCGCCAGA   >  1:1373533/1‑35
                                      TTTTTGCGCGGACGGTGGCGCGGCAACCGCCCGAA  >  1:13517834/1‑35
                                      TTTTTGCGCGGACGGTGGCGCGGCAACCGCCAGAA  >  1:8684602/1‑35
                                                                         
CATCGGCAATAATGGTGTTTCCAATATCGACACCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3265262‑3265224
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcttTTTTGCGCGGACGGTGGCGCGGCAACCGCCAGAA  <  REL606/3603631‑3603598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.