New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 212468 = | 63 (0.610) | 18 (0.200) | 5/42 | NT | 18.6% | intergenic (+46/‑53) | accA/ldcC | acetyl‑CoA carboxylase subunit alpha/lysine decarboxylase 2, constitutive |
? | REL606 | 235476 = | 117 (1.140) | intergenic (+3/+45) | yafE/mltD | predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase/predicted membrane‑bound lytic murein transglycosylase D |
CTTCCTTAATCATAGCCTGCTCAAACCGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/212501‑212468 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGGCACCGGG > REL606/235476‑235490 ||| CTTCCTTAATCATAGCCTGCTCAAACCGTGGCGAA > 1:15256465/1‑35 TTCCTTAATCATAGCCTGCTCAAACCGTGGCGAAA > 1:6411049/1‑35 TCCTTAATCATAGCCTGCTCAAACCGTGGCGAAAA > 1:90852/1‑35 TCCTTAATCATAGCCTGCTCAAACCGTGGCGAAAA > 1:606791/1‑35 TTAATCATAGCCTGCTCAAACCGTGGCGAAAAAAA > 1:16424864/1‑35 TAATCATAGCCTGCTCAAACCGTGGCGAAAAAAAA > 1:7156247/1‑35 ATCATAGCCTGCTCAAACCGTGGCGAAAAAAAAAg > 1:15146903/1‑34 ATCATAGCCTGCTCAAACCGTGGCGAAAAAAAAAg > 1:17214101/1‑34 ATCATAGCCTGCTCAAACCGTGGCGAAAAAAAAAA > 1:1624761/1‑35 ATCATAGCCTGCTCAAACCGTGGCGAAAAAAAAAA > 1:6242567/1‑35 TCATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAG > 1:6058309/1‑35 TCATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAG > 1:20437696/1‑35 CATAGCCTGCTCAAACCGTGGCGATAAAAAAAAGc > 1:2965927/1‑34 CATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGc > 1:8213368/1‑34 CATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGa > 1:4182871/1‑34 ATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGcc > 1:19096698/1‑33 ATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGac > 1:1441282/1‑33 ATAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGGC > 1:9979774/1‑35 TAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGacc > 1:9400043/1‑32 TAGCCTGCTCAAACCGTGGCGAAAAAAAAAAGGCc > 1:9862902/1‑34 GCCTGCTCAAACCGTGGCGAAAAAAAAAAGGCAac > 1:11531287/1‑33 GCCTGCTCAAACCGTGGCGAAAAAAAAAAGGCACC > 1:7683869/1‑35 CCTGCTCAAACCGTGGCGAAAAAAAAAAGGCACCG > 1:6581035/1‑35 CCTGCTCAAACCGTGGCGAAAAAAAAAAGCCACCc > 1:7447684/1‑34 TGCTCAAACCGTGGCGAAAAAAAAAAGGCACCcga > 1:14244051/1‑32 TGCTCAAACCGTGGCGAAAAAAAAAAGGCACCGca > 1:5983103/1‑33 ||| CTTCCTTAATCATAGCCTGCTCAAACCGTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/212501‑212468 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGGCACCGGG > REL606/235476‑235490 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |