New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2682742 = | NA (NA) | 39 (0.540) | 6/34 | NT | 45.9% | noncoding (135/768 nt) | IS1 | repeat region |
? | REL606 | 2703961 = | 65 (0.630) | coding (794/1185 nt) | ygaX | predicted transporter |
Only 100 of 1086 total aligned reads displayed.
GGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATCG > REL606/2703927‑2703995 | gttttacggcattgagagcagagatagcgctgatg > 1:8705835‑M2/35‑35 (MQ=255) gttttacggcagtgagagcagagatagcgctgatg < 1:18889816‑M2/1‑1 (MQ=255) gttttacggcagtgagagcagagatagcgctgatg < 1:15272168‑M2/1‑1 (MQ=255) gttttacggcagtgagagcagagatagcgctgatg < 1:15127362‑M2/1‑1 (MQ=255) gttttacggcagtgagagcagagatagcgctgatg < 1:2921166‑M2/1‑1 (MQ=255) ttttacggcagtgagagcagagatagcgctgatGt < 1:9591639‑M2/2‑1 (MQ=255) ttttacggcagtgagagcagagatagcgctgatGt < 1:7945183‑M2/2‑1 (MQ=255) ttttacggcagtgagagcagagatagcgctgatGt < 1:20092148‑M2/2‑1 (MQ=255) ttttacggcagtgagagcagagatagcgctgatGt < 1:12166168‑M2/2‑1 (MQ=255) tttactgcagtgagagcagagatagcgctgatGTc > 1:18450806‑M2/33‑35 (MQ=255) tttacggcagtgagagcagagatagcgctgatGTc < 1:2611660‑M2/3‑1 (MQ=255) tttacggcagtgagagcagagatagcgctgatGTc < 1:2747920‑M2/3‑1 (MQ=255) tttacggcagtgagagcagagatagcgctgatGTc < 1:3274211‑M2/3‑1 (MQ=255) tttacggcagtgagagcagagatagcgctgatGTc < 1:3755399‑M2/3‑1 (MQ=255) tttacggcagtgagagcagagatagcgctgatGTc < 1:11034551‑M2/3‑1 (MQ=255) tttacggcagtgagagcagagatagcgctgatGTc < 1:11194814‑M2/3‑1 (MQ=255) tttacggcagtgagagcagagatagcgctgatGTc < 1:6485757‑M2/3‑1 (MQ=255) nttacgncagtgagagcagagatagcgctgatGTc < 1:689956‑M2/3‑1 (MQ=255) aCTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTc < 1:8558290/35‑1 (MQ=255) aCTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTc < 1:12644469/35‑1 (MQ=255) ttacggcagtgagagcagagatagcgctgatGTcc < 1:17634437‑M2/4‑1 (MQ=255) ttacggcagtgagagcagagatagcgctgatGTcc < 1:19298678‑M2/4‑1 (MQ=255) ttacggcagtgagagcagagatagcgctgatGTcc < 1:20380406‑M2/4‑1 (MQ=255) ttacggcagtgagagcagagatagcgctgatGTcc < 1:20539451‑M2/4‑1 (MQ=255) ttacggcagtgagagcagagatagcgctgatGTcc < 1:2417682‑M2/4‑1 (MQ=255) ttacggcagtgagagcagagatagcgctgatGTcc < 1:6767723‑M2/4‑1 (MQ=255) ttacggcagtgagagcagagatagcgctgatGTcc < 1:6149368‑M2/4‑1 (MQ=255) tacggcagtgagagcagagatagcgctgatGTCcg < 1:5621728‑M2/5‑1 (MQ=255) tacggcagtgagagcagagatagcgctgatGTCcg < 1:13013828‑M2/5‑1 (MQ=255) tacggcagtgagagcagagatagcgctgatGTCcg < 1:15635566‑M2/5‑1 (MQ=255) tacggcagtgagagcagagatagcgctgatGTCcg < 1:9364015‑M2/5‑1 (MQ=255) tacggcagtgagagcagagatagcgctgatGTCcg < 1:16261531‑M2/5‑1 (MQ=255) tacggcagtgagagcagagatagcgctgatGCCcg < 1:17823683‑M2/5‑1 (MQ=255) tacggaagtgagagcagagatagcgctgatGTCcg < 1:16357327‑M2/5‑1 (MQ=255) acggcagtgagagcagagatagcgctgatGTCcgg < 1:19753222‑M2/6‑1 (MQ=255) acggcagtgagagcagagatagcgctgatGTCcgg < 1:18176029‑M2/6‑1 (MQ=255) acggcagtgagagcagagatagcgctgatGTCcgg < 1:17969095‑M2/6‑1 (MQ=255) acggcagtgagagcagagatagcgctgatGTCcgg < 1:5452435‑M2/6‑1 (MQ=255) acggcagtgagagcagagatagcgctgatGTCcgg < 1:1003461‑M2/6‑1 (MQ=255) acggcagtgagagcagagatagcgctgatGTCcgg < 1:10373069‑M2/6‑1 (MQ=255) acggcagtgagagcagagatagcgctgatGTCcgg < 1:14775635‑M2/6‑1 (MQ=255) gCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCcggc < 1:3076030/35‑1 (MQ=255) cggcagtgagagcagagatagcgctgatGTCcggc < 1:13903228‑M2/7‑1 (MQ=255) cggcagtgagagcagagatagcgctgatGTCcggc < 1:16597372‑M2/7‑1 (MQ=255) ggcagtgagagcagagatagcgctgatGTTcggcg > 1:11618546‑M2/28‑35 (MQ=255) ggcagtgagagcagagatagcgctgatGTCcggcg < 1:13248656‑M2/8‑1 (MQ=255) ggcagtgagagcagagatagcgctgatGTCcggcg > 1:4579353‑M2/28‑35 (MQ=255) ggcagtgagagcagagatagcgctgatGTCcggcg > 1:19972296‑M2/28‑35 (MQ=255) ggcagtgagagcagagatagcgctgatGTCcggcg < 1:19071273‑M2/8‑1 (MQ=255) cGGGAGCTGCCGGAGCGTTGGGCGCTCGTCcggcg < 1:17188096/35‑1 (MQ=255) cGGGAGCTGCCGGAGCGTTGGGCGCTCGTCcggcg < 1:4411835/35‑1 (MQ=255) gcagtgagagcagagatagcgctgatGTCcggcgg > 1:3439392‑M2/27‑35 (MQ=255) gcagtgagagcagagatagcgctgatGTCcggcgg > 1:14934991‑M2/27‑35 (MQ=255) gcagtgagagcagagatagcgctgatGTCcggcgg > 1:19619535‑M2/27‑35 (MQ=255) gcagtgagagcagagatagcgctgatGTCcggcgg < 1:13453715‑M2/9‑1 (MQ=255) gcagtgagagcagagatagcgctgatGTCcggcgg < 1:8326816‑M2/9‑1 (MQ=255) gcagtgagagcagagatagcgctgatGTCcggcgg < 1:20211156‑M2/9‑1 (MQ=255) gcagtgagagcagagatagcgctgatGTCcggcgg < 1:4775532‑M2/9‑1 (MQ=255) cagtgagagcatagatagcgctgatGTCCggcggg > 1:14601880‑M2/26‑35 (MQ=255) cagtgagagcagagatagcgctgatGTCCggcggg > 1:4246495‑M2/26‑35 (MQ=255) cagtgagagcagagatagcgctgatGTCCggcggg > 1:919887‑M2/26‑35 (MQ=255) cagtgagagcagagatagcgctgatGTCCggcggg > 1:2270323‑M2/26‑35 (MQ=255) cagtgagagcagagatagcgctgatGTCCggcggg > 1:14459397‑M2/26‑35 (MQ=255) cagtgagagcagagatagcgctgatGTCCggcggg > 1:15821963‑M2/26‑35 (MQ=255) cagtgagagcagagatagcgctgatGTCCggcggg > 1:11788025‑M2/26‑35 (MQ=255) cactgagagcagagatagcgctgatGTCCggcggg > 1:12019460‑M2/26‑35 (MQ=255) attgagagcagagatagcgctgatGTCcggcgggg > 1:9847356‑M2/25‑34 (MQ=255) agtgagagcagagatagcgctgatGTCcggctggg > 1:17407505‑M2/25‑34 (MQ=255) agtgagagcagagatagcgctgatGTCcggcgggg > 1:16985008‑M2/25‑34 (MQ=255) agtgagagcagagatagcgctgatGTCcggcgggg > 1:17514046‑M2/25‑34 (MQ=255) agtgagagcagagatagcgctgatGTCcggcgggg > 1:16098189‑M2/25‑34 (MQ=255) agtgagagcagagatagcgctgatGTCcggcgggg > 1:13749514‑M2/25‑34 (MQ=255) gtgagagcagagatagcgctgatGTccggcggggg > 1:3918933‑M2/24‑33 (MQ=255) gtgagagcagagatagcgctgatGTccggcggggg > 1:14096554‑M2/24‑33 (MQ=255) gtgagagcagagatagcgctgatGTccggcggggg > 1:2112574‑M2/24‑33 (MQ=255) gtgagagcagagatagcgctgatGTccggcggggg > 1:12351505‑M2/24‑33 (MQ=255) gtgagagcagagatagcgctgatGTccggcggggc > 1:15468484‑M2/24‑33 (MQ=255) tgagagcagagatagcgctgatGtccggcgggggt > 1:814358‑M2/23‑32 (MQ=255) tgagagcagagatagcgctgatGtccggcgggggt > 1:18702917‑M2/23‑32 (MQ=255) tgagagcagagatagcgctgatGtccggcgggggt > 1:4061685‑M2/23‑32 (MQ=255) tgagagcagagatagcgctgatGtccggcgggggt > 1:5310518‑M2/23‑32 (MQ=255) tgagagcagagatagcgctgatGtccggcgggggc > 1:4924149‑M2/23‑32 (MQ=255) tgagagcagagatagcgctgatGtccggcggggct > 1:3656351‑M2/23‑32 (MQ=255) tgagagcagagatagcgctgatGtccggcggggct > 1:7769455‑M2/23‑32 (MQ=255) tgagagcagagatagcgctgatGtccggcggggcg > 1:16792126‑M2/23‑32 (MQ=255) tGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGtt < 1:1089175/35‑1 (MQ=255) tGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGtt < 1:14287291/35‑1 (MQ=255) agagcagagatagcgctgatGTCCGGCGGGGGGtt > 1:738621‑M2/21‑35 (MQ=255) agagcagagatagcgctgatGTCCGGCGGGGGGtt > 1:6325280‑M2/21‑35 (MQ=255) agagcagagatagcgctgatGTCCGGCGGGGGGtt > 1:13567439‑M2/21‑35 (MQ=255) gCCGGAGCGTTGGGCGCTCGTCCGgcggggggggg > 1:7121940/1‑32 (MQ=38) ccGGAGCGTTGGGCGCTCGTCCGGCGGGCGGtttt < 1:7587540/35‑1 (MQ=255) ccGGAGCGTTGGGCGCTCGTCCGGCGGGCGGtttt < 1:10644306/35‑1 (MQ=255) ccGGAGCGTTGGGCGCTCGTCCGGCGGGCGGtttt < 1:8946638/35‑1 (MQ=255) agcagagatagcgctgatGTCCGGCGGGGGGtttt > 1:11413675‑M2/19‑35 (MQ=255) gcagagatagcgctgatGTCCGGCGGGGGgttttc > 1:1018042‑M2/18‑34 (MQ=255) gTTGGGCGCTCGTCCGGCGGGCGGGTTTGCCgctc > 1:5752439/1‑32 (MQ=37) gggCGCTCGTCCGGCGGGCGGTTTTGCCGATAAgg < 1:15996961/35‑1 (MQ=255) cTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCaaa < 1:12829939/35‑1 (MQ=255) cGTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATc < 1:5055538/35‑1 (MQ=255) | GGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATCG > REL606/2703927‑2703995 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |