New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 61503553 (0.520)4 (0.050) 3/38 NT 7.4% coding (157/198 nt) ybdD hypothetical protein
?REL606 = 3625455 58 (0.710)pseudogene (8/738 nt) yhjQ b3534; cell division protein (chromosome partitioning ATPase)

CGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/614997‑615035
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggGGGGGCGGGGAGGCGTGGGGACAACAACCATCAC  <  REL606/3625455‑3625422
                                                                         
CGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGG                                        >  1:11153215/1‑35
CGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGG                                        <  1:12111530/35‑1
CGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGG                                        >  1:7813947/1‑35
CGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGG                                        >  1:16994975/1‑35
CGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGG                                        <  1:20551990/35‑1
 GCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGC                                       <  1:965671/35‑1
 GCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGC                                       >  1:7533776/1‑35
  CCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCA                                      <  1:7190607/35‑1
  CCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCA                                      >  1:12946209/1‑35
  CCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCA                                      >  1:16245668/1‑35
  CCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCA                                      >  1:19146576/1‑35
  CCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCA                                      >  1:16174960/1‑35
   CGATTACCTACGAAGAGTTTTTCCGTGAGCGGCAG                                     >  1:18109074/1‑35
   CGATGACCTACGAAGAGTTTTTCCGTGAGCGTCAG                                     >  1:17434425/1‑35
   CGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAG                                     <  1:13001202/35‑1
   CGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAG                                     >  1:15742488/1‑35
    GATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGG                                    <  1:1941949/35‑1
    GATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGG                                    >  1:5756860/1‑35
    GATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGG                                    <  1:6590694/35‑1
    GATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGG                                    >  1:9859731/1‑35
     ATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGG                                   >  1:10182038/1‑35
     ATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGG                                   >  1:2161037/1‑35
     ATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGG                                   >  1:12809703/1‑35
     ATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGG                                   >  1:12887718/1‑35
      TGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGGG                                  >  1:16848837/1‑35
      TGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGGG                                  >  1:13629208/1‑35
       GACCTACGAAGAGTTTTTCCGTGAGCGGCAGGGcg                                 >  1:19988520/1‑33
       GACCTACGAAGAGTTTTTCCGTGAGCGGCAGGGGG                                 >  1:8186072/1‑35
       GACCTACGAAGAGTTTTTCCGTGAGCGGCAGGGGG                                 >  1:15546750/1‑35
       GACCTACGAAGAGTTTTTCCGTGAGCGGCAGGGGG                                 >  1:3838761/1‑35
        ACCTACGAAGAGTTTTTCCGTGAGCGGCAGGGGGc                                >  1:13614807/1‑34
        ACCTACGAAGAGTTTTTCCGTGAGCGGCAGGGGGG                                >  1:8050182/1‑35
        ACCTACGAAGAGTTTTTCCGTGAGCGGCAGGGGGG                                >  1:12412810/1‑35
        ACCTACGAAGAGTTTTTCCGTGAGCGGCAGGGGGG                                >  1:2966051/1‑35
        ACCTACGAAGAGTTTTTCCGTGAGCGGCAGGGGGG                                >  1:17514414/1‑35
         CCTACGAAGAGTTTTTCCGTGAGCGGCAGGGGGGG                               >  1:7116218/1‑35
         CCTACGAAGAGTTTTTCCGTGAGCGGCAGGGGGGG                               >  1:12728805/1‑35
           TACGAAGAGTTTTTCCGTGAGCGGCAGGGGGGGgg                             >  1:10534309/1‑33
           TACGAAGAGTTTTTCCGTGAGCGGCAGGGGGGGCG                             >  1:13561984/1‑35
             CGAAGAGTTTTTCCGTGAGCGGCAGGGGGGGCGGG                           >  1:6788090/1‑35
              GAAGAGTTTTTCCGTGAGCGGCAGGGGGGGCGGGG                          >  1:1813478/1‑35
              GAAGAGTTTTTCCGTGAGCGGCAGGGGGGGCGCGG                          >  1:2797304/1‑35
                                      GGGGGGCGGGGAGGCGTGGGGACAACAACCATCAC  >  1:6703790/1‑35
                                                                         
CGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/614997‑615035
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggGGGGGCGGGGAGGCGTGGGGACAACAACCATCAC  <  REL606/3625455‑3625422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.