New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1183967102 (0.990)18 (0.180) 7/48 NT 19.3% intergenic (+43/+40) ycfR/ycfS hypothetical protein/hypothetical protein
?REL606 = 3012564 49 (0.480)coding (248/1020 nt) ECB_02814 conserved hypothetical protein

Only 100 of 203 total aligned reads displayed.

CCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTTATCC  >  REL606/1183933‑1184001
                                  |                                  
ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCC                                    <  1:14767608‑M1/35‑1 (MQ=255)
ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCC                                    <  1:7340627‑M1/35‑1 (MQ=255)
ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCC                                    <  1:12046307‑M1/35‑1 (MQ=255)
ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCC                                    >  1:13658258‑M1/1‑35 (MQ=255)
ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCC                                    >  1:11333471‑M1/1‑35 (MQ=255)
ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCC                                    >  1:11554786‑M1/1‑35 (MQ=255)
 cTCATTAATGCCTGCTACTGCTGATTTTTTCCCcg                                   >  1:4315846/1‑35 (MQ=255)
 cTCATTAATGCCTGCTACTGCTGATTTTTTCCCcg                                   <  1:6697576/35‑1 (MQ=255)
  tCATTAATGCCTGCTACTGCTGATTTTTTCCCcgc                                  >  1:8917272/1‑35 (MQ=255)
   cATTAATGCCTGCTACTGCTGATTTTTTCCCcgcg                                 >  1:16067323/1‑35 (MQ=255)
   cATTAATGCCTGCTACTGCTGATTTTTTCCCcgcg                                 <  1:19341340/35‑1 (MQ=255)
    aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa                                >  1:11412573/1‑35 (MQ=255)
    aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa                                >  1:4052721/1‑35 (MQ=255)
    aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa                                <  1:20216820/35‑1 (MQ=255)
    aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa                                <  1:17557394/35‑1 (MQ=255)
    aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa                                >  1:12844435/1‑35 (MQ=255)
    aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa                                >  1:4698557/1‑35 (MQ=255)
    aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa                                >  1:13059261/1‑35 (MQ=255)
       cttGCCTGCTACTGCTGATTTTTTCCCCGCGACAt                             <  1:1094536/33‑1 (MQ=255)
       aaTGCCTTCTACTGCTGATTTTTTCCCCGCGACAt                             >  1:10616495/1‑35 (MQ=255)
       aaTGCCTGCTACTGCTGATTTTTTCCCCGCGACAt                             <  1:12502431/35‑1 (MQ=255)
        aTGCCTGCTACTGCTGATTTTTTCCCCGCGACATg                            >  1:18396515/1‑35 (MQ=255)
        aTGCCTGCTACTGCTGATTTTTTCCCCGCGACATg                            >  1:16223962/1‑35 (MQ=255)
        aTGCCTGCTACTGCTGATTTTTTCCCCGCGACATg                            >  1:17915695/1‑35 (MQ=255)
        aTGCCTGCTACTGCTGATTTTTTCCCCGCGACATg                            >  1:20310318/1‑35 (MQ=255)
        aTGCCTGCTACTGCTGATTTTTTCCCCGCGACATg                            >  1:8143206/1‑35 (MQ=255)
         tGCCTGCTACTGCTGATTTTTTCCCCGCGACATgt                           >  1:610112/1‑34 (MQ=255)
         tGCCTGCTACTGCTGATTTTTTCCCCGCGACATGc                           >  1:5221859/1‑35 (MQ=255)
          gCCTGCTACTGCTGATTTTTTCCCCGCGACATGcc                          >  1:12936356/1‑35 (MQ=255)
          gCCTGCTACTGCTGATTTTTTCCCCGCGACATGcc                          >  1:15106461/1‑35 (MQ=255)
          gCCTGCTACTGCTGATTTTTTCCCCGCGACATGcc                          >  1:5928928/1‑35 (MQ=255)
           ccTGCTGCTGCTGATTTTTTCCCCGCGACATGCCg                         <  1:10520623/35‑1 (MQ=255)
           ccTGCTCCTGCTGATTTTTTCCCCGCGGCATGCCg                         <  1:11908426/35‑1 (MQ=25)
           ccTGCTACTGCTGATTTTTTCCCCGCGACATGCCg                         <  1:2634792/35‑1 (MQ=255)
            cTGCTACTGCTGATTTTTTCCCCGCGACATGCCgt                        >  1:463084/1‑35 (MQ=255)
            cTGCTACTGCTGATTTTTTCCCCGCGACATGCCgt                        <  1:14271910/35‑1 (MQ=255)
            atGCTACTGCTGATTTTTTCCCCGCGACATGCCgt                        <  1:16647741/34‑1 (MQ=255)
             tGCTCCTGCTGATTTTTTCCCCGCGACATGCCgtg                       <  1:7039717/35‑1 (MQ=255)
             tGCTACTGCTGATTTTTTCCCCGCGACATGCCgtg                       >  1:71067/1‑35 (MQ=255)
             tGCTACTGCTGATTTTTTCCCCGCGACATGCCgtg                       >  1:10724104/1‑35 (MQ=255)
              gCTACTGCTGATTTTTTCCCCGCGACATGCCgtgt                      >  1:13016329/1‑35 (MQ=255)
              gCTACTGCTGATTTTTTCCCCGCGACATGCCgtgt                      >  1:19405516/1‑35 (MQ=255)
               cTACTGCTGATTTTTTCCCCGCGACATGCCGTGTc                     >  1:13382765/1‑35 (MQ=255)
               cTACTGCTGATTTTTTCCCCGCGACATGCCGTGTc                     <  1:16534727/35‑1 (MQ=255)
               cTACTGCTGATTTTTTCCCCGCGACATGCCGTGTc                     >  1:11845364/1‑35 (MQ=255)
                tACTGCTGATTTTTTCCCCGCGACATGCCGTGTcg                    <  1:19917232/35‑1 (MQ=255)
                tACTGCTGATTTTTTCCCCGCGACATGCCGTGTcg                    >  1:19596899/1‑35 (MQ=255)
                 aCTGCTGATTTTTTCCCCGCGACATGCCGTGTcgc                   <  1:14480772/35‑1 (MQ=255)
                 aCTGCTGATTTTTTCCCCGCGACATGCCGTGTcgc                   <  1:18709447/35‑1 (MQ=255)
                 aCTGCTGATTTTTTCCCCGCGACATGCCGTGTcgc                   >  1:9134258/1‑35 (MQ=255)
                   tgctgATTTTTTCCCCGCGACATGCCGTGTCGCgg                 <  1:16851965/35‑1 (MQ=255)
                   tgctgATTTTTTCCCCGCGACATGCCGTGTCGCgg                 <  1:19721147/35‑1 (MQ=255)
                   tgctgATTTTTTCCCCGCGACATGCCGTGTCGCgg                 >  1:13240811/1‑35 (MQ=255)
                    gctgATTTTTTCCCCGCGACATGCCGTGTCGCggg                <  1:3205726/35‑1 (MQ=255)
                    gctgATTTTTTCCCCGCGACATGCCGTGTCGCggg                <  1:20093965/35‑1 (MQ=255)
                    gctgATTTTTTCCCCGCGACATGCCGTGTCGCggg                >  1:660252/1‑35 (MQ=255)
                    gctgATTTTTTCCCCGCGACATGCCGTGTCGCggg                >  1:8543954/1‑35 (MQ=255)
                    gctgATTTTTTCCCCGCGACATGCCGTGTCGCggg                <  1:18329868/35‑1 (MQ=255)
                    gctgATTTTTTCCCCGCGACATGCCGTGTCGCggg                <  1:17754032/35‑1 (MQ=255)
                     ctgATTTTTTCCCCGCGACATGCCGTGTCGCgggg               <  1:8272395/35‑1 (MQ=255)
                      tttttttttcccCccgccatgccgccacgctgttt              <  1:12292925‑M1/32‑23 (MQ=255)
                      tgATTTTTTCCCCGCGACATGCCGTGTCGCGGGGa              >  1:5986219/1‑35 (MQ=255)
                       gATTTTTTCCCCGCGACATGCCGTGTCGCggggct             >  1:17994850/1‑33 (MQ=255)
                       gATTTTTTCCCCGCGACATGCCGTGTCGCGGGGAt             >  1:13955178/1‑35 (MQ=255)
                        aTTTTTTCCCCGCGACATGCCGTGTCGCGGGGGtt            >  1:12078810/1‑35 (MQ=255)
                         ttttttTCCCccgccatgccgccacgctgtttttc           <  1:15658226‑M1/35‑26 (MQ=255)
                         ttttttTCCCccgccatgccgccacgctgtttttc           <  1:6746825‑M1/35‑26 (MQ=255)
                         ttttttCCCCGCGACATGCCGTGTCGCGGGGAttt           <  1:13279050/35‑1 (MQ=255)
                         tttttcCCCCccgacatgccctgatttacccattc           <  1:19795009‑M1/35‑26 (MQ=255)
                         tttttcCCCCccgacatgccctgatttacccattc           <  1:15703514‑M1/35‑26 (MQ=255)
                         tttttcCCCCccgacatgccctgatttacccattc           <  1:7897060‑M1/35‑26 (MQ=255)
                         atttttcCCCccgacatgccctgatttacccattc           <  1:17617533‑M1/34‑26 (MQ=255)
                          tttttCCCCccgccatgccgccacgctgtttttcc          <  1:2945115‑M1/35‑27 (MQ=255)
                          tttttCCCCGCGACATGCCGTGTCGCGGGGAtttt          >  1:3577953/1‑35 (MQ=255)
                          ttttcCCCCccgacatgccctgatttacccattcc          <  1:9064727‑M1/35‑27 (MQ=255)
                          ttttcCCCCccgacatgccctgatttacccattcc          <  1:15009878‑M1/35‑27 (MQ=255)
                          cttttCCCCGCGACATGCCGTGTCGCGGGGAtttt          <  1:5101433/34‑1 (MQ=255)
                           ttttTCCCccgccatgccgccacgctgtttttccc         <  1:16185623‑M1/35‑28 (MQ=255)
                           ttttTCCCccgccatgccgccacgctgtttttccc         <  1:18549360‑M1/35‑28 (MQ=255)
                           ttttCCCCccgccatgccgccacgctgtttttccc         <  1:4589606‑M1/35‑28 (MQ=255)
                            tttTCCCccgccatgccgccacgctgtttttcccg        <  1:12370689‑M1/35‑29 (MQ=255)
                            ttcccccccgacatgccctgatttacccattcctg        <  1:13560055‑M1/32‑29 (MQ=255)
                             tttcccccgccatgccgccacgctgtttttcccga       <  1:9421530‑M1/32‑30 (MQ=255)
                             tttcccccgccatgccgccacgctgtttttcccga       <  1:7759203‑M1/32‑30 (MQ=255)
                             ttCCCCGCGACATGCCGTGTCGCGGGGAttttttt       >  1:5667054/1‑35 (MQ=255)
                             ttCCCCGCGACATGCCGTGTCGCGGGGAttttttt       <  1:17384314/35‑1 (MQ=255)
                             ttCCCCGCGACATGCCGTGTCGCGGGGAttttttt       <  1:204160/35‑1 (MQ=255)
                             ttCCCAGCGACATGCCGTGTCGCGGGGAttttttt       <  1:20491693/35‑1 (MQ=255)
                              cccccccgacatgccctgatttacccattcctgaa      <  1:14659518‑M1/34‑31 (MQ=255)
                               ccccGCGACATGCCGTGTCGCGGGGAttttttttt     >  1:16954309/1‑34 (MQ=255)
                                cccGCGACATGCCGTGTCGCGGGGATTTTTTTTAt    >  1:9488232/1‑35 (MQ=255)
                                 ccccgccatgccgccacgctgtttttcccgatggc   <  1:8090966‑M1/35‑34 (MQ=255)
                                 ccccgacatgccctgatttacccattcctgaaaga   <  1:1125036‑M1/35‑34 (MQ=255)
                                 ccGCGACATGCCGTGTCGCGGGGATTTTTTTTATc   <  1:4556990/35‑1 (MQ=255)
                                 ccGCGACATGCCGTGTCGCGGGGATTTTTTTTATc   <  1:1702976/35‑1 (MQ=255)
                                 ccGCGACATGCCGTGTCGCGGGGATTTTTTTTATc   <  1:2096162/35‑1 (MQ=255)
                                 ccGCGACATGCCGTGTCGCGGGGATTTTTTTTATc   >  1:1985951/1‑35 (MQ=255)
                                  cgcgACATGCCGTGTCGCGGGGATTTTTTTTATcc  <  1:13806553/35‑1 (MQ=255)
                                  cgcgACATGCCGTGTCGCGGGGATTTTTTTTATcc  >  1:15382055/1‑35 (MQ=255)
                                  cccgccatgccgccacgctgtttttcccgatggcg  >  1:14222808‑M1/1‑1 (MQ=255)
                                  |                                  
CCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTTATCC  >  REL606/1183933‑1184001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.