New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 354520181 (0.790)9 (0.120) 3/36 NT 13.7% coding (847/1575 nt) nikA nickel transporter subunit
?REL606 = 4576439 53 (0.690)coding (2/381 nt) hpaF 5‑carboxymethyl‑2‑hydroxymuconate delta‑isomerase

Only 100 of 135 total aligned reads displayed.

AATATTTTCAGTACATTCCACGATAAAGTGCGGCATGGTGGTTCCTTACGCGGGCAGCGGGAAAACAGC  >  REL606/4576405‑4576473
                                  |                                  
aaTATTTTCAGTACATTCCACGATAAAGTGCGGCa                                    >  1:13457448/1‑35 (MQ=255)
aaTATTTTCAGTACATTCCACGATAAAGTGCGGCa                                    >  1:8585751/1‑35 (MQ=255)
aaTATTTTCAGTACATTCCACGATAAAGTGCGGCa                                    <  1:12530556/35‑1 (MQ=255)
aaTATTTTCAGTACATTCCACGATAAAGTGCGGCa                                    >  1:20416787/1‑35 (MQ=255)
 atatTTTCAGTACATTCCACGATAAAGTGCGGCAt                                   <  1:15967651‑M2/35‑2 (MQ=255)
 atatTTTCAGTACATTCCACGATAAAGTGCGGCAt                                   <  1:11443485‑M2/35‑2 (MQ=255)
  tatTTTCAGTACATTCCACGATAAAGTGCGGCAtg                                  <  1:15690075‑M2/35‑3 (MQ=255)
  tatTTTCAGTACATTCCACGATAAAGTGCGGCAtg                                  >  1:3620269‑M2/1‑33 (MQ=255)
  tatTTTCAGTACATGCCACGATAAAGTGCGGCAtg                                  >  1:14283988‑M2/1‑33 (MQ=255)
   atTTTCAGTACATTCCACGATAAAGTGCGGCAtgg                                 <  1:18732614‑M2/35‑4 (MQ=255)
   atTTTCAGTACATTCCACGATAAAGTGCGGCAtgg                                 <  1:4991504‑M2/35‑4 (MQ=255)
   atTTTCAGTACATTCCACGATAAAGTGCGGCAtgg                                 >  1:10694644‑M2/1‑32 (MQ=255)
   atTTTCAGTACATTCCACGATAAAGTGCGGCAtgg                                 >  1:1336618‑M2/1‑32 (MQ=255)
    ttttCAGTACATTCCACGATAAAGTGCGGCAtggt                                <  1:11345073‑M2/35‑5 (MQ=255)
    ttttCAGTACATTCCACGATAAAGTGCGGCAtggt                                >  1:19889601‑M2/1‑31 (MQ=255)
    ttttCAGTACATTCCACGATAAAGTGCGGCAtggt                                >  1:17025022‑M2/1‑31 (MQ=255)
    ttttCAGTACATTCCACGATAAAGTGCGGCAtggt                                <  1:7962095‑M2/35‑5 (MQ=255)
    ttttCAGTACATTCCACGATAAAGTGCGGCAtggt                                >  1:15583880‑M2/1‑31 (MQ=255)
    ttttCAGTACATTCCACGATAAAGTGCGGCAtggt                                >  1:1365787‑M2/1‑31 (MQ=255)
    ttttCAGTACATTCCACGATAAAGTGCGGCAtggt                                >  1:9098347‑M2/1‑31 (MQ=255)
     tttCAGTACATTCCACGATAAAGTGCGGCAtggtg                               <  1:3882798‑M2/35‑6 (MQ=255)
     tttCAGTACATTCCACGATAAAGTGCGGCAtggtg                               >  1:3438335‑M2/1‑30 (MQ=255)
     tttCAGTACATTCCACGATAAAGTGCGGCAtggtg                               <  1:2272536‑M2/35‑6 (MQ=255)
     tttCAGTACATTCCACGATAAAGTGCGGCAtggtg                               <  1:1896025‑M2/35‑6 (MQ=255)
     tttCAGTACATTCCACGATAAAGTGCGGCAtggtg                               <  1:9002565‑M2/35‑6 (MQ=255)
     tttCAGTACATTCCACGATAAAGTGCGGCAtggtg                               <  1:11731382‑M2/35‑6 (MQ=255)
     tttCAGTACATTCCACGATAAAGTGCGGCAtggtg                               >  1:10130808‑M2/1‑30 (MQ=255)
     tttAAGTACATTCCACGATAAAGTGCGGCAtggtg                               >  1:1615572‑M2/1‑30 (MQ=255)
      ttCAGTACATTCCACGATAAAGTGCGGCAtggtgg                              >  1:12818447‑M2/1‑29 (MQ=255)
      ttCAGTACATTCCACGATAAAGTGCGGCAtggtgg                              >  1:4676236‑M2/1‑29 (MQ=255)
      ttCAGTACATTCCACGATAAAGTGCGGCAtggtgg                              <  1:9752776‑M2/35‑7 (MQ=255)
      ttCAGTACATTCCACGATAAAGTGCGGCAtggtgg                              <  1:13715684‑M2/35‑7 (MQ=255)
       tCAGTACATTCCACGATAAAGTGCGGCAtggtggg                             <  1:14883858‑M2/35‑8 (MQ=255)
        cAGTACATTCCACGATAAAGTGCTGCATGGTGGtt                            >  1:1854833/1‑35 (MQ=255)
        cAGTACATTCCACGATAAAGTGCGGCATGGTGGtt                            <  1:15017677/35‑1 (MQ=255)
         aGTACATTCCACTATAAAGTGCGGCATAGTGGTTc                           >  1:10566862/1‑35 (MQ=38)
         aGTACATTCCACGATAAAGTGCGGCAtggtggggg                           <  1:1987610‑M2/35‑10 (MQ=255)
         aGTACATTCCACGATAAAGTGCGGCATGGTGGTTc                           <  1:11933968/35‑1 (MQ=255)
          gTACATTCCACGATAAAGTGCGGCATGGTGGTTcc                          <  1:20533777/35‑1 (MQ=255)
           tACATTCCACGATAAAGTGCGGCAtggtgggggct                         <  1:10449628‑M2/35‑12 (MQ=255)
           tACATTCCACGATAAAGTGCGGCAtggtgggggct                         <  1:4285340‑M2/35‑12 (MQ=255)
           tACATTCCACGATAAAGTGCGGCATGGTGGTTCCt                         <  1:7680639/35‑1 (MQ=255)
           tACATTCCACGATAAAGTGCGGCATGGTGGTTCCt                         <  1:7220375/35‑1 (MQ=255)
           tACATTCCACGATAAAGTGCGGCATGGTGGTTCCt                         <  1:16708813/35‑1 (MQ=255)
           tACATTCCACGATAAAGTGCGGCACGGTGGGTcgc                         >  1:9967619/1‑33 (MQ=25)
            aCATTCCACGATAAAGTGCGGCAtggtgggggctt                        <  1:8621291‑M2/35‑13 (MQ=255)
            aCATTCCACGATAAAGTGCGGCATGGTGGTTCCtt                        <  1:7691216/35‑1 (MQ=255)
            aCATTCAACGATAAAGTGCGGCATGGTGGTTCCtt                        <  1:17559262/35‑1 (MQ=255)
             cATTCCACGATAAAGTGCGGCAtggtgggggcttt                       <  1:3328647‑M2/35‑14 (MQ=255)
             cATTCCACGATAAAGTGCGGCATGGTGGTTCCTTa                       <  1:18033759/35‑1 (MQ=255)
             cATTACACGATAAAGTGCGGCATGGTGGTTCCTTa                       <  1:2294056/35‑1 (MQ=255)
              aTTCCACGATAAAGTGCGGCAtggtggggggtttc                      <  1:3895577‑M2/35‑15 (MQ=255)
              aTTCCACGATAAAGTGCGGCAtggtgggggctttc                      <  1:9051795‑M2/35‑15 (MQ=255)
              aTTCCACGATAAAGTGCGGCATGGTGGTTCCTTAc                      <  1:4629679/35‑1 (MQ=255)
              aTTCCACGATAAAGTGCGGCATGGTGGTTCCTTAc                      <  1:20125631/35‑1 (MQ=255)
              aTTCCACGATAAAGTGCGGCATGGTGGTTCCTTAc                      <  1:11608071/35‑1 (MQ=255)
              aTTCCACGATAAAGTGCGGCATGGTGGTTACTTAc                      <  1:6018063/35‑1 (MQ=255)
              aTTCCACGATAAAGTGCGGCATGGTGGGTGCttcc                      >  1:6635233/1‑33 (MQ=25)
               ttCCACGATAAAGTGCGGCATGGTGGTTCCTTAcg                     <  1:18588604/35‑1 (MQ=255)
               ttCCACGATAAAGTGCGGCATGGTGGTTCCTTAcg                     <  1:12522068/35‑1 (MQ=255)
               ttCCACGATAAAGTGCGGCATGGTGGGTGCtttag                     >  1:3715155/1‑32 (MQ=21)
               ttCCACGATAAAGTGCGGCATGGTGGGGCCtttag                     >  1:4940230/1‑32 (MQ=25)
                tCCACGATAAAGTGCGGCAtggtgggggctttaga                    <  1:3043947‑M2/35‑17 (MQ=255)
                tCCACGATAAAGTGCGGCATGGTGGTTCCTTAcgc                    <  1:20464295/35‑1 (MQ=255)
                tCCACGATAAAGTGCGGCATGGTGGTTCCTTAcgc                    <  1:19771145/35‑1 (MQ=255)
                tCCACGATAAAGTGCGGCATGGTGGTTCCTTAcgc                    <  1:19271023/35‑1 (MQ=255)
                tCCACGATAAAGTGCGGCATGGTGGGTGCTTCcga                    >  1:476241/1‑34 (MQ=21)
                ctcACGATAAAGTGCGGCATGGTGGTTCCTTAcgc                    <  1:11811668/33‑1 (MQ=255)
                  cACGATAAAGTGCGGCAtggtgggggcttttgcgg                  <  1:3656272‑M2/35‑19 (MQ=255)
                  cACGATAAAGTGCGGCATGGTGGTTCCTTACGCgg                  <  1:15167608/35‑1 (MQ=255)
                   aCGATAAAGTGCGGCAtggtgggggctttcgcggg                 <  1:12010927‑M2/35‑20 (MQ=255)
                   aCGATAAAGTGCGGCAtggtgggggctttcgcggg                 <  1:3593437‑M2/35‑20 (MQ=255)
                   aCGATAAAGTGCGGCATGGTGGTTCCTTACGCggg                 <  1:4440325/35‑1 (MQ=255)
                    cGATAAAGTGCGGCATGGTGGTTCCTTACGCGGGc                <  1:13234694/35‑1 (MQ=255)
                    cGATAAAGTGCGGCATGGTGGTTCCTTACGCGGGc                <  1:4235214/35‑1 (MQ=255)
                      aTAAAGTGCGGCATGGTGGTTCCTTACGCGGGCAg              <  1:18146650/35‑1 (MQ=255)
                      aTAAAGTGCGGCATGGTGGTTCCTTACGCGGGCAg              <  1:8143166/35‑1 (MQ=255)
                      aTAAAGTGCGGCATGGTGGGGGCTTTCGCgggggg              >  1:11510247/1‑32 (MQ=12)
                       tAAAGTGCGGCATGGTGGTTCCTTACGCGGGCAGc             <  1:10798582/35‑1 (MQ=255)
                       tAAAGTGCGGCATGGTGATTCCTTACGCGGGCAGc             <  1:15216919/35‑1 (MQ=255)
                        tctgTGCGGCATGGTGGTTCCTTACGCGGGCAGCg            <  1:857816/32‑1 (MQ=255)
                        aaaGTGCGGCATGGTGGTTCCTTACGCGGGCAGCg            <  1:5516897/35‑1 (MQ=255)
                        aaaGTGCGGCATGGTGGTTCCTTACGCGGGCAGCg            <  1:6881524/35‑1 (MQ=255)
                        aaaGTGCGGCATGGTGGTTCCTTACGCGGGCAGCg            <  1:2312504/35‑1 (MQ=255)
                         aaGTGCGGCATTGTGGTTCCTTACGCGGGCAGCgg           >  1:9266123/1‑35 (MQ=255)
                             gCGGCATGGTGGTTCCTTACGCGGGCAGCGGGaaa       <  1:9688323/35‑1 (MQ=255)
                             gCGGCATGGTGGTTCCTTACGCGGGCAGCGGGaaa       <  1:11915824/35‑1 (MQ=255)
                              cGGCATGGTGGTTCCTTACGCGGGCAGCGGGaaaa      <  1:5426951/35‑1 (MQ=255)
                               ggCATGGTGGTTCCTTACGCGGGCAGCGGGAAAAc     <  1:9671065/35‑1 (MQ=255)
                               ggCATGGTGGTTCCTTACGCGGGCAGCGGGAAAAc     <  1:13346096/35‑1 (MQ=255)
                                gCATGGTGGTTCCTTACGCGGGCAGCGGGGAAACa    >  1:3911027/1‑35 (MQ=255)
                                gCATGGTGGTTCCTTACGCGGGCAGCGGGAAAACa    <  1:14810198/35‑1 (MQ=255)
                                gCATGGTGGTTCCTTACGCGGGCAGCGGGAAAACa    <  1:14598631/35‑1 (MQ=255)
                                gCATGGTGGTTCCTTACGCGGGCAGCGGGAAAACa    <  1:1350601/35‑1 (MQ=255)
                                gCATGGTGGTTCCTTACGCGGGCAGCGGGAAAACa    <  1:16050330/35‑1 (MQ=255)
                                gCATGGTGGGTCCTTACGCGGGCAGCGGGGAAACa    >  1:8042480/1‑35 (MQ=37)
                                 cATGGTGGTTCCTTACGCGGGCAGCGGGAAAACAg   <  1:15823918/35‑1 (MQ=255)
                                 cATGGTGGTTCCTTACGCGGGCAGCGGGAAAACAg   <  1:30110/35‑1 (MQ=255)
                                  aTGGTGGTTCCTTACGCGGGCAGCGGGAAAACAGc  <  1:10466743/35‑1 (MQ=255)
                                  aTGGTGGTTCCTTACGCGGGCAGCGGGAAAACAGc  <  1:6411875/35‑1 (MQ=255)
                                  |                                  
AATATTTTCAGTACATTCCACGATAAAGTGCGGCATGGTGGTTCCTTACGCGGGCAGCGGGAAAACAGC  >  REL606/4576405‑4576473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.