New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1689078 =46 (0.450)9 (0.120) 4/34 NT 15.7% coding (362/636 nt) nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
?REL606 = 1996353 64 (0.880)coding (1494/1644 nt) yeeO predicted multidrug efflux system

AGTCGGCCAGCCGAATGCAGTGTTTAATACGACGTTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1689118‑1689078
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggctgGGGTGTGGTTGGTGTCTGGATGGGAATGTTTGCC  <  REL606/1996353‑1996320
                                                                           
gggCGGCCAGCCGAATGCAGTGTTTAATACGACGT                                          <  1:18869160/32‑1
agaCGGCCAGCCGAATGCAGTGTTTAATACGACGT                                          <  1:16628021/32‑1
AGTCGGCCAGCCGAATGCAGTGTTTAATACGACGT                                          >  1:18633058/1‑35
AGTCGGCCAGCCGAATGCAGTGTTTAATACGACGT                                          <  1:16687835/35‑1
AGTCGGCCAGCCGAATGCAGTGTTTAATACGACGT                                          <  1:14568360/35‑1
AGTCGGCCAGCCGAATGCAGTGTTTAATACGACGT                                          <  1:13133655/35‑1
 GTCGGCCAGCCGAATGCAGTGTTTAATACGACGTT                                         >  1:15878986/1‑35
 GTCGGCCAGCCGAATGCAGTGTTTAATACGACGTT                                         <  1:6642860/35‑1
 GTCGGCCAGCCGAATGCAGTGTTTAATACGACGTT                                         >  1:14283285/1‑35
  gCGGCCAGCCGAATGCAGTGTTTAATACGACGTTG                                        <  1:2232291/34‑1
  TCGGCCAGCCGAATGCAGTGTTTAATACGACGTTG                                        >  1:5998234/1‑35
  TCGGCCAGCCGAATGCAGTGTTTAATACGACGTTG                                        <  1:15967272/35‑1
  TCGGCCAGCCGAATGCAGTGTTTAATACGACGTTG                                        <  1:8866710/35‑1
   CGGCCAGCCGAATGCAGTGTTTAATACGACGTTGG                                       >  1:912112/1‑35
   CGGCCAGCCGAATGCAGTGTTTAATACGACGTTGG                                       <  1:6577705/35‑1
   CGGCCAGCCGAATGCAGTGTTTAATACGACGTTGG                                       >  1:5257461/1‑35
    gcCCAGCCGAATGCAGTGTTTAATACGACGTTGGC                                      <  1:20095819/33‑1
    GGCCAGCCGAATGCAGTGTTTAATACGACGTTGGC                                      >  1:17900775/1‑35
    GGCCAGCCGAATGCAGTGTTTAATACGACGTTGGC                                      >  1:3520749/1‑35
    GGCCAGCCGAATGCAGTGTTTAATACGACGTTGGC                                      >  1:932395/1‑35
     GCCAGCCGAATGCAGTGTTTAATACGACGTTGGCT                                     <  1:18577361/35‑1
     GCCAGCCGAATGCAGTGTTTAATACGACGTTGGCT                                     <  1:11026325/35‑1
      CCAGCCGAATGCAGTGTTTAATACGACGTTGGCTG                                    >  1:7713431/1‑35
      CCAGCCGAATGCAGTGTTTAATACGACGTTGGCTG                                    <  1:11539466/35‑1
      CCAGCCGAATGCAGTGTTTAATACGACGTTGGCTG                                    <  1:4082793/35‑1
      CCAGCCGAATGCAGTGTTTAATACGACGTTGGCTG                                    >  1:3056948/1‑35
       CAGCCGAATGCAGTGTTTAATACGACGTTGGCTGG                                   >  1:1855035/1‑35
        AGCCGAATGCAGTGTTTAATACGACGTTGGCTGGG                                  >  1:5260723/1‑35
        AGCCGAATGCAGTGTTTAATACGACGTTGGCTGGG                                  >  1:2162256/1‑35
        AGCCGAATGCAGTGTTTAATACGACGTTGGCTGGG                                  >  1:9830077/1‑35
        AGCCGAATGCAGTGTTTAATACGACGTTGGCTGGG                                  >  1:5125971/1‑35
          CCGAATGCAGTGTTTAATACGACGTTGGCTGGtgg                                >  1:15263/1‑32
          CCGAATGCAGTGTTTAATACGACGTTGGCTGGGGT                                >  1:7514103/1‑35
          CCGAATGCAGTGTTTAATACGACGTTGGCTGGGGT                                >  1:908720/1‑35
           CGAATGCAGTGTTTAATACGACGTTGGCTGGGGgg                               >  1:11352624/1‑33
           CGAATGCAGTGTTTAATACGACGTTGGCTGGGGgg                               >  1:3098112/1‑33
            GAATGCAGTGTTTAATACGACGTTGGCTGGGGTGT                              >  1:19492857/1‑35
             AATGCAGTGTTTAATACGACGTTGGCTGGGGTTTG                             >  1:19101150/1‑35
             AATGCAGTGTTTAATACGACGTTGGCTGGGGTTTG                             >  1:567148/1‑35
             AATGCAGTGTTTAATACGACGTTGGCTGGGGTGgg                             >  1:18851200/1‑33
             AATGCAGTGTTTAATACGACGTTGGCTGGGGTGTG                             >  1:5513210/1‑35
              ATGCAGTGTTTAATACGACGTTGGCTGGGGTTTGt                            >  1:9950794/1‑34
              ATGCAGTGTTTAATACGACGTTGGCTGGGGTGTGG                            >  1:10131294/1‑35
               TGCAGTGTTTAATACGACGTTGGCTGGGGTGTGGg                           >  1:14410103/1‑34
               TGCAGTGTTTAATACGACGTTGGCTGGGGTGTGGT                           >  1:11073685/1‑35
               TGCAGTGTTTAATACGACGTTGGCTGGGGGGTGGT                           >  1:8744493/1‑35
                                  TTGGCTGGGGTGTGGTTGGTGTCTGGATGGGAATG        <  1:8383997/35‑1
                                   TGGCTGGGGTGTGGTTGGTGTCTGGATGGGAATGT       <  1:11768/35‑1
                                   TGGCTGGGGTGTGGTTGGTGTCTGGATGGGAATGT       <  1:11845146/35‑1
                                   TGGCTGGGGTGTGGTTGGTGTCTGGATGGGAATGT       <  1:829864/35‑1
                                     tCTGGGGTGTGGTTGGTGTCTGGATGGGAATGTTT     <  1:5572514/34‑1
                                     GCTGGTGTGTGGTTGGTGTCTGGATGGGAATGTTT     >  1:6583087/1‑35
                                     GCTGGGGTGTGGTTGGTGTCTGGATGGTAATGTTT     >  1:4085891/1‑35
                                     GCTGGGGTGTGGTTGGTGTCTGGATGGGAATGTTT     <  1:13219822/35‑1
                                     GCTGGGGTGTGGTTGGTGTCTGGATGGGAATGTTT     <  1:8722101/35‑1
                                      CTGGGGTGTGGTTGGTGTCTGGATGGGAATGTTcg    >  1:7788969/1‑33
                                      CTGGGGTGTGGTTGGTGTCTGGATGGGAATGTTTG    <  1:10893077/35‑1
                                      CTGGGGTGTGGTTGGTGTCTGGATGGGAATGTTTG    <  1:869049/35‑1
                                      CTGGGGTGTGGTTGGTGTCTGGATGGGAATGTTTG    <  1:14052991/35‑1
                                      CTGGGGTGTGGTTGGTGTCTGGATGGGAATGTTTG    <  1:6321948/35‑1
                                      CTGGGGTGTGGTTGGTGTCTGGATGGGAATGTTTG    <  1:4352364/35‑1
                                      CTGGGGTGTGGTTGGTGTCTGGATGGGAATGTTTG    <  1:4542821/35‑1
                                       TGGGGTGTGGTTGGTGTCTGGATGGGAATGTTTGC   <  1:8004770/35‑1
                                       TGGGGTGTGGTTGGTGTCTGGATGGGAATGTTTGC   <  1:8007759/35‑1
                                       TGGGGTGTGGTTGGTGTCTGGATGGGAATGTTTGC   <  1:15811488/35‑1
                                       TGGGGTGTGGTTGGTGTCTGGATGGGAATGTTTGC   >  1:16674108/1‑35
                                       TGGGGTGTGGTTGGTGTCTGGATGGGAATGTTTGC   >  1:3255841/1‑35
                                        GGGGTGTTGTTGGTGTCTGGATGGGAATGTTTGCC  >  1:14999758/1‑35
                                        GGGGTGTGGTTGGTGTCTGGATGGGAATGTTTGCC  <  1:13477524/35‑1
                                        GGGGTGTGGTTGGTGTCTGGATGGGAATGTTTGCC  >  1:7131349/1‑35
                                        GGGGTGTGGTTGGTGTCTGGATGGGAATGTTTGCC  <  1:17682290/35‑1
                                                                           
AGTCGGCCAGCCGAATGCAGTGTTTAATACGACGTTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1689118‑1689078
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggctgGGGTGTGGTTGGTGTCTGGATGGGAATGTTTGCC  <  REL606/1996353‑1996320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.