New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 293737 = | 51 (0.500) | 8 (0.090) | 4/40 | NT | 11.3% | intergenic (+7/‑520) | ykgD/ykgE | predicted DNA‑binding transcriptional regulator/predicted oxidoreductase |
? | REL606 | = 1036069 | 83 (0.970) | intergenic (+41/+35) | ycbG/ompA | hypothetical protein/outer membrane protein A (3a;II*;G;d) |
CCCGGAATGCGGATTATCTTTGCCCTGATTTCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/293774‑293737 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTT < REL606/1036069‑1036036 CCCGGAATGCGGATTATCTTTGCCCTGATTTCTGG > 1:4383146/1‑35 CCCGGAATGCGGATTATCTTTGCCCTGATTTCTGG > 1:8584255/1‑35 CCCGGAATGCGGATTATCTTTGCCCTGATTTCTGG > 1:16246915/1‑35 CCGGAATGCGGATTATCTTTGCCCTGATTTCTGGC < 1:10170043/35‑1 CCGGAATGCGGATTATCTTTGCCCTGATTTCTGGC > 1:4457732/1‑35 CCGGAATGCGGATTATCTTTGCCCTGATTTCTGGC < 1:15946774/35‑1 CGGAATGCGGATTATCTTTGCCCTGATTTCTGGCG > 1:10241937/1‑35 CGGAATGCGGATTATCTTTGCCCTGATTTCTGGCG > 1:7421834/1‑35 CGGAATGCGGATTATCTTTGCCCTGATTTCTGGCG > 1:17585832/1‑35 CGGAATGCGGATTATCTTTGCCCTGATTTCTGGCG > 1:5348111/1‑35 CGGAATGCGGATTATCTTTGCCCTGATTTCTGGCG > 1:5526943/1‑35 GGAATGCGGATTATCTTTGCCCTGATTTCTGGCGG > 1:3850038/1‑35 GGAATGCGGATTATCTTTGCCCTGATTTCTGGCGG > 1:19418547/1‑35 GGAATGCGGATTATCTTTGCCCTGATTTCTGGCGG < 1:1795032/35‑1 GGAATGCGGATTATCTGTGCCCTGATTTCTGGCGG > 1:4094057/1‑35 GAATGCGGATTATCTTTGCCCTGATTTCTGGCGGa > 1:9482652/1‑34 GAATGCGGATTATCTTTGCCCTGATTTCTGGCGGG > 1:7963738/1‑35 GAATGCGGATTATCTTTGCCCTGATTTCTGGCGGG > 1:894536/1‑35 AATGCGGATTATCTTTGCCCTGATTTCTGGCGGGt > 1:5863941/1‑34 AATGCGGATTATCTTTGCCCTGATTTCTGGCGGGG > 1:5973977/1‑35 AATGCGGATTATCTTTGCCCTGATTTCTGGCGGGG > 1:17528658/1‑35 AATGCGGATTATCTTTGCCCTGATTTCTGGCGGGG > 1:689295/1‑35 ATGCGGATTATCTTTGCCCTGATTTCTGGCGGGGg > 1:15827481/1‑34 ATGCGGATTATCTTTGCCCTGATTTCTGGCGGGGg > 1:7574261/1‑34 ATGCGGATTATCTTTGCCCTGATTTCTGGCGGGGg > 1:10260297/1‑34 ATGCGGATTATCTTTGCCCTGATTTCTGGCGGGGT > 1:18707773/1‑35 TGCGGATTATCTTTGCCCTGATTTCTGGCGGGGTT > 1:2840900/1‑35 GCGGATTATCTTTGCCCTGATTTCTGGCGGGGgtg > 1:1473895/1‑32 GCGGATTATCTTTGCCCTGATTTCTGGCGGGGTTT > 1:9734677/1‑35 GGATTATCTTTGCCCTGATTTCTGGCGGGGGTTTT > 1:15499644/1‑35 GATTATCTTTGCCCTGATTTCTGGCGGGGGTTTTT > 1:18002812/1‑35 ATTATCTTTGCCCTGATTTCTGGCGGGGTTTTTTT > 1:19861292/1‑35 ATTATCTTTGCCCTGATTTCTGGCGGGGTTTTTTT > 1:798993/1‑35 ATTATCTTTGCCCTGATTTCTGGCGGGGTTGTTTT > 1:12502367/1‑35 ATTATCTTTGCCCTGATTTCTGGCGGGGGTTTTTT > 1:10405087/1‑35 TATCTTTGCCCTGATTTCTGGCGGGGTTTTTTTTG > 1:4744627/1‑35 ATCTTTGCCCTGATTTCTGGCGGGGGTTTTTTTGg > 1:6125878/1‑34 GCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGA > 1:7378951/1‑35 GCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGA > 1:12730396/1‑35 GCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGA > 1:16955710/1‑35 CGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGAC > 1:721832/1‑35 CGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGAC > 1:8008890/1‑35 CGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGAC < 1:1575650/35‑1 CGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGAC > 1:11359193/1‑35 GGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTT < 1:15387150/35‑1 GGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTT < 1:15252871/35‑1 GGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTT > 1:15416460/1‑35 GGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTT > 1:8127690/1‑35 CCCGGAATGCGGATTATCTTTGCCCTGATTTCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/293774‑293737 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTT < REL606/1036069‑1036036 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |