New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 4086554 | 71 (0.690) | 6 (0.070) | 5/42 | NT | 6.5% | coding (604/903 nt) | fieF | ferrous iron efflux protein F |
? | REL606 | 4620932 = | 111 (1.230) | intergenic (+49/‑41) | slt/trpR | lytic murein transglycosylase, soluble/Trp operon repressor |
ATTTTATATAGCGCGTTACGCATGGGATATGAGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4086518‑4086554 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCG > REL606/4620932‑4620965 ATTTTATATAGCGCGTTACGCATGGGATATGAGGC < 1:8331239/35‑1 ATTTTATATAGCGCGTTACGCATGGGATATGAGGC > 1:577494/1‑35 ATTTTATATAGCGCGTTACGCATGGGATATGAGGC < 1:20019647/35‑1 ATTTTATATAGCGCGTTACGCATGGGATATGAGGC < 1:14802564/35‑1 ATTTTATATAGCGCGTTACGCATGGGATATGAGGC > 1:14369409/1‑35 ATTTTATATAGCGCGTTACGCATGGGATATGAGGC < 1:1170496/35‑1 ATTTTATATAGCGCGTTACGCATGGGATATGAGGC < 1:10378212/35‑1 ATTTTATATAGCGCGTTACGCATGGGATATGAGGC < 1:10820623/35‑1 TTTTATATAGCGCGTTACGCATGGGATATGAGGCG < 1:6083497/35‑1 TTTTATATAGCGCGTTACGCATGGGATATGAGGCG > 1:10675530/1‑35 TTTTATATAGCGCGTTACGCATGGGATATGAGGCG < 1:18272733/35‑1 TTTTATATAGCGCGTTACGCATGGGATATGAGGCG < 1:16558414/35‑1 TTTATATAGCGCGTTACGCATGGGATATGAGGCag > 1:13276973/1‑33 TTTATATAGCGCGTTACGCATGGGATATGAGGCGG < 1:14337284/35‑1 TTATATAGCGCGTTACGTATGGGATATGAGGCGGG > 1:7499399/1‑35 TTATATAGCGCGTTACGCATGGGATATGAGGCGGG > 1:9367883/1‑35 TTATATAGCGCGTTACGCATGGGATATGAGGCGGG > 1:19329665/1‑35 TTATATAGCGCGTTACGCATGGGATATGAGGCGGG > 1:12350515/1‑35 TATATAGCGCGTTACGCATGGGATATGAGGCGGGG > 1:20116036/1‑35 TATATAGCGCGTTACGCATGGGATATGAGGCGGGG > 1:105024/1‑35 ATATAGCGCGTTACGCATGGGATATGAGGCGGGGG > 1:1462364/1‑35 TATAGCGCGTTACGCATGGGATATGAGGCGGGAGA > 1:15818132/1‑35 ATAGCGCGTTACGCATGGGATATGAGGCGGGGCAG > 1:6164598/1‑35 TAGCGCGTTACGCATGGGATATGAGGCGGGGCAGG > 1:15156221/1‑35 AGCGCGTTACGCATGGGATATGAGGCGGGGGAGag > 1:9956260/1‑33 AGCGCGTTACGCATGGGATATGAGGCGGGGCAGGC > 1:7944328/1‑35 CGCGTTACGCATGGGATATGAGGCGGGGGAGTCAT > 1:20281550/1‑35 GCGTTACGCATGGGATATGAGGCGGGGGAGGCATT > 1:6300936/1‑35 CGTTACGCATGGGATATGAGGCGGGGGGGGCATTT > 1:12039171/1‑35 CGTTACGCATGGGATATGAGGCGGGGGAGGCATTT > 1:855444/1‑35 CGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGG > 1:19785655/1‑35 CGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGG > 1:7209155/1‑35 CGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGG > 1:3715892/1‑35 CGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGG > 1:2864276/1‑35 GGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGC > 1:20483539/1‑35 GGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGC > 1:4060109/1‑35 GGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGC > 1:15209233/1‑35 GGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGC > 1:13599689/1‑35 GGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCG > 1:6021022/1‑35 GGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCG > 1:5540599/1‑35 GGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCG > 1:10884537/1‑35 GGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCG < 1:9409968/35‑1 ATTTTATATAGCGCGTTACGCATGGGATATGAGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4086518‑4086554 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCG > REL606/4620932‑4620965 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |