New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1286708 = | 97 (0.940) | 10 (0.120) | 4/40 | NT | 12.7% | intergenic (+32/‑151) | narI/ECB_01206 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein |
? | REL606 | = 4391784 | 57 (0.670) | coding (602/1164 nt) | yjfC | predicted synthetase/amidase |
Only 100 of 141 total aligned reads displayed.
TTGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGC > REL606/4391750‑4391818 | ttGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTc < 1:17815065/35‑1 (MQ=255) ttGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTc < 1:3311728/35‑1 (MQ=255) ttGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTc > 1:8215569/1‑35 (MQ=255) ttGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTc > 1:11954758/1‑35 (MQ=255) ttGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTc < 1:9032519/35‑1 (MQ=255) tGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCg > 1:2090592‑M2/1‑34 (MQ=255) tGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCg > 1:4189807‑M2/1‑34 (MQ=255) tGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCg > 1:20364645‑M2/1‑34 (MQ=255) gCAGGACTGCGCCCAGCCGGCAGGGCAGGAGTCgc > 1:6553372‑M2/1‑33 (MQ=255) gCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgc > 1:5584004‑M2/1‑33 (MQ=255) cAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgcg > 1:12858408‑M2/1‑32 (MQ=255) cAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgcg < 1:2245711‑M2/35‑4 (MQ=255) cAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgcg > 1:1664678‑M2/1‑32 (MQ=255) aGGACTGCGCCCAGCAGGCAGTGCAGGAGGCGCgg > 1:2698713/1‑35 (MQ=25) aGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgcgg < 1:1308334‑M2/35‑5 (MQ=255) aGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgcgg < 1:19157392‑M2/35‑5 (MQ=255) aGGACTGCGCCCAGCAGGCAGGGCAGGAGTCgcgg < 1:5331845‑M2/35‑5 (MQ=255) gACTGCGCCGAGCAGGCAGGGCAGGAGTCGCGGtt < 1:1115917/35‑1 (MQ=255) gACTGCGCCCAGCAGGCATGGCAGGGGGCGCgggg > 1:5324682/1‑33 (MQ=21) gACTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGtt < 1:12166241/35‑1 (MQ=255) cttGCGCCCAGCAGGCAGGGCAGGAGTCGCGGttt < 1:2191703/33‑1 (MQ=255) aCTGCGCCCAGCAGGCAGGGCAGGAGTCgcggggt < 1:5059445‑M2/35‑8 (MQ=255) aCTGCGCCCAGCAGGCAGGGCAGGAGTCgcggggt < 1:6735293‑M2/35‑8 (MQ=255) aCTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGttt < 1:8970511/35‑1 (MQ=255) aCTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGttt < 1:8413779/35‑1 (MQ=255) aCTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGttt < 1:16389395/35‑1 (MQ=255) cTGCGCTCAGCAGGCAGGGCAGGAGTCGCGGTTTa < 1:8309684/35‑1 (MQ=255) cTGCGCCCAGCAGGCAGGGCAGGAGTCgcgggggt < 1:2160901‑M2/35‑9 (MQ=255) cTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGTTTa < 1:117490/35‑1 (MQ=255) tGCGCCCAGCAGGCAGGGCAGGAGTCGCGGTTTAt < 1:3422269/35‑1 (MQ=255) tGCGCCCAGCAGGCAGGGCAGGAGTCGCGGTTTAt < 1:10884415/35‑1 (MQ=255) tGCGCCCAGCAGGCAGGGCAGGAGCCGCGGgtttt > 1:3481486/1‑33 (MQ=25) gcgcCCAGCAGGCAGGGCAGGAGTCgcggggtttt < 1:15266931‑M2/35‑11 (MQ=255) gcgcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATc < 1:3645352/35‑1 (MQ=255) gcgcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATc < 1:15840862/35‑1 (MQ=255) gcgcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATc < 1:58614/35‑1 (MQ=255) gcgcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATc < 1:13825674/35‑1 (MQ=255) gcgcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATc < 1:1206011/35‑1 (MQ=255) gcgcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATc < 1:11448314/35‑1 (MQ=255) gcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTa < 1:15639415/35‑1 (MQ=255) gcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTa < 1:19034871/35‑1 (MQ=255) gcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTa < 1:6020309/35‑1 (MQ=255) gcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTa < 1:2596467/35‑1 (MQ=255) gcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTa < 1:11483335/35‑1 (MQ=255) gcCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTa < 1:9072970/35‑1 (MQ=255) cccAGCAGGCAGGGCAGGAGTCGCGGTTTATCTAc < 1:9527553/35‑1 (MQ=255) cccAGCAGGCAGGGCAGGAGTCGCGGTTTATCTAc < 1:9660006/35‑1 (MQ=255) cccAGCAGGCAGGGCAGGAGTCGCGGTTTATCTAc < 1:14014385/35‑1 (MQ=255) ccAGCAGGCAGGGCAGGAGTCgcggggttttttta < 1:4449016‑M2/35‑15 (MQ=255) cagcagGCAGGGCAGGAGTCgcggggtttttttat < 1:8681870‑M2/35‑16 (MQ=255) cagcagGCAGGGCAGGAGTCgcggggttttttcac < 1:200466‑M2/35‑16 (MQ=255) cagcagGCAGGGCAGGAGTCGCGGTTTATCTACAt < 1:2436587/35‑1 (MQ=255) cagcagGCAGGGCAGGAGTCGCGGTTTATCTACAt < 1:7184259/35‑1 (MQ=255) cagcagGCAGGGCAGGAGTCGCGGTTTATCTACAt < 1:10547788/35‑1 (MQ=255) cagcagGCAGGGCAGGAGTCGCGGTTTATCTACAt < 1:4021069/35‑1 (MQ=255) cagcagGCAGGGCAGGAGTCGCGGTTTATCTACAt < 1:12488878/35‑1 (MQ=255) cagcagGCAGGGCAGGAGTCGCAGGTTTTCTACAt > 1:7273636/1‑35 (MQ=25) nncagnnaggGCAGGAGTCGCGGTTTATCTACAtt < 1:11064581/33‑1 (MQ=255) agcagGCAGGGCAGGAGTCGCGGTTTATCTACAtt < 1:7346457/35‑1 (MQ=255) agcagGCAGGGCAGGAGTCGCGGTTTATCTACAtt < 1:9633428/35‑1 (MQ=255) caggcaggGCAGGAGTCGCGGTTTATCTACATTGa < 1:18661862/35‑1 (MQ=255) caggcaggGCAGGAGTCGCGGTTTATCTACATTGa < 1:9595763/35‑1 (MQ=255) caggcaggGCAGGAGTCGCGGGTTTTTTTCAtttt > 1:15018792/1‑33 (MQ=12) aggcaggGCAGGAGTCGCGGTTTATCTACATTGaa < 1:8036935/35‑1 (MQ=255) aggcaggGCAGGAGTCGCGGTTTATCTACATTGaa < 1:714424/35‑1 (MQ=255) ggcagggcagGAGTCGCGGTTTATCTACATTGAAg < 1:16482318/35‑1 (MQ=255) ggcagggcagGAGTCGCGGTTTATCTACATTGAAg < 1:4761332/35‑1 (MQ=255) ggcagggcagGAGTCGCGGTTTATCTACATTGAAg < 1:19870859/35‑1 (MQ=255) ggcagggcagGAGTCGCGGCTTATCTACATTGAAg < 1:5588283/35‑1 (MQ=255) gcagggcaggAGTCGCGGTTTATCTACATTGAAGa < 1:16970757/35‑1 (MQ=255) gcagggcaggAGTCGCGGTTTATCTACATTGAAGa < 1:15600613/35‑1 (MQ=255) agggcaggAGTCGCGGTTTATCTACATTGAAGAtc < 1:5416139/35‑1 (MQ=255) gggcaggAGTCGCGGTTTATCTACATTGAAGAtct < 1:7488467/35‑1 (MQ=255) ggcaggAGTCGCGGTTTATCTACATTGAAGAtctc < 1:8856647/35‑1 (MQ=255) ggcaggAGTCGCGGTTTATCTACATTGAAGAtctc < 1:17945708/35‑1 (MQ=255) gcaggAGTCGCGGTTTATCTACATTTAAGATCTCg < 1:733011/35‑1 (MQ=255) gcaggAGTCGCGGTTTATCTACATTGAAGATCTCg < 1:1050493/35‑1 (MQ=255) gcaggAGTCGCGGTTTATCTACATTGAAGATCTCg < 1:15816035/35‑1 (MQ=255) caggAGTCGCGGTTTATCTACATTGAAGATCTCgg < 1:17649547/35‑1 (MQ=255) caggAGTCGCGGTTTATCTACATTGAAGATCTCgg < 1:7288024/35‑1 (MQ=255) aggAGTCGCGGTTTATCTACATTGAAGATCTCGGt < 1:2078213/35‑1 (MQ=255) aggAGTCGCGGTTTATCTACATTGAAGATCTCGGt < 1:14325133/35‑1 (MQ=255) aggAGTCGCGGTTTATCTACATTGAAGATCTCGGt < 1:741760/35‑1 (MQ=255) aggAGTCGCGGTTTATCTACATTGAAGATCTCGGt < 1:6705366/35‑1 (MQ=255) gAGTCGCGGTTTATCTACATTGAAGATCTCGGttt < 1:6201958/35‑1 (MQ=255) gAGTCGCGGTTTATCTACATTGAAGATCTCGGttt < 1:14535521/35‑1 (MQ=255) gAGTCGCGGTTTATCTACATTGAAGATCTCGGttt < 1:8391668/35‑1 (MQ=255) gAGTCGCGGTTTATCTACATTGAAGATCTCGGttt < 1:4013466/35‑1 (MQ=255) aGTCGCGGTTTATCTACATTGAAGATCTAGGTTTg < 1:20394716/35‑1 (MQ=255) gTCGCGGTTTATCTACATTGAAGATCTCGGTTTgg < 1:6898946/35‑1 (MQ=255) gTCGCGGTTTATCTACATTGAAGATCTCGGTTTgg < 1:11958775/35‑1 (MQ=255) tCGCGGTTTATCTACATTTAAGATCTCGGTTTggg < 1:1677958/35‑1 (MQ=255) tCGCGGTTTATCTACATTGAAGATCTCGGTTTggg > 1:3090288/1‑35 (MQ=255) tCGCGGTTTATCTACATTGAAGATCTCGGTTTggg > 1:14566937/1‑35 (MQ=255) tCGCGGTTTATCTACATTGAAGATCTCGGTTTggg > 1:5665351/1‑35 (MQ=255) tCGCGGTTTATCTACATTGAAGATCTCGGTTTggg < 1:15090528/35‑1 (MQ=255) cgcgGTTTATCTACATTGAAGATCTCGGTTTGGGc < 1:4836960/35‑1 (MQ=255) cgcgGTTTATCTACATTGAAGATCTCGGTTTGGGc > 1:17871794/1‑35 (MQ=255) cgcgGTTTATCTACATTGAAGATCTCGGTTTGGGc < 1:19092340/35‑1 (MQ=255) cgcgGTTTATCTACATTGAAGATCTCGGTTTGGGc < 1:7583687/35‑1 (MQ=255) | TTGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGC > REL606/4391750‑4391818 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |