New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1924695 = | 91 (0.890) | 6 (0.100) | 3/28 | NT | 9.9% | coding (52/612 nt) | ruvA | Holliday junction DNA helicase motor protein |
? | REL606 | = 2696376 | 56 (0.930) | coding (277/2145 nt) | nrdE | ribonucleotide‑diphosphate reductase alpha subunit |
CAGACTCAGAGGCATCATCATTGAAAAACAACCCCCGCTGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1924738‑1924695 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctggtgtGTGCGTGGGCAAACAGCGTAATGACAAAGTCGCG < REL606/2696376‑2696343 CAGACTCAGAGGCATCATCATTGAAAAACAACCCC < 1:18783192/35‑1 CAGACTCAGAGGCATCATCATTGAAAAACAACCCC > 1:19862692/1‑35 AGACTCAGAGGCATCATCATTGAAAAACAACCCCC > 1:5832638/1‑35 AGACTCAGAGGCATCATCATTGAAAAACAACCCCC > 1:16270420/1‑35 GACTCAGAGGCATCATCATTGAAAAACAACCCCCG > 1:7717510/1‑35 GACTCAGAGGCATCATCATTGAAAAACAACCCCCG > 1:4168752/1‑35 GACTCAGAGGCATCATCATTGAAAAACAACCCCCG > 1:16519909/1‑35 GACTCAGAGGCATCATCATTGAAAAACAACCCCCG > 1:17143414/1‑35 GACTCAGAGGCATCATCATTGAAAAACAACCCCCG > 1:5269029/1‑35 GACTCAGAGGCATCATCATTGAAAAACAACCCCCG > 1:5641099/1‑35 ACTCAGAGGCATCATCATTGAAAAACAACCCCCGC > 1:3864597/1‑35 TCAGAGGCATCATCATTGAAAAACAACCCCCGCTG > 1:4163988/1‑35 TCAGAGGCATCATCATTGAAAAACAACCCCCGCTG > 1:10969070/1‑35 CAGAGGCATCATCATTGAAAAACAACCCCCGCTGG > 1:14892156/1‑35 AGAGGCATCATCATTGAAAAACAACCCCCGCTGGT > 1:18398109/1‑35 GAGGCATCATCATTGAAAAACAACCCCCGCTGGTG > 1:11893540/1‑35 GAGGCATCATCATTGAAAAACAACCCCCGCTGGTG < 1:20452348/35‑1 GAGGCATCATCATTGAAAAACAACCCCCGCTGGTG > 1:15152806/1‑35 GAGGCATCATCATTGAAAAACAACCCCCGCTGGTG > 1:5880978/1‑35 AGGCATCATCATTGAAAAACAACCCCCGCTGGTGT > 1:6152487/1‑35 AACAAACCCCGCTGGTGTGTGCGTGGGCAAACAGC < 1:18042462/35‑1 cCAAACCCCGCTGGTGTGTGCGTGGGCAAACAGCG < 1:18040694/34‑1 ACAAACCCCGCTGGTGTGTGCGTGGGCAAACAGCG < 1:4820744/35‑1 ACAAACCCCGCTGGTGTGTGCGTGGGCAAACAGCG < 1:12161356/35‑1 CAAACCCCGCTGGTGTGTGCGTGGGCAAACAGCGT < 1:17944346/35‑1 CAAACCCCGCTGGTGTGTGCGTGGGCAAACAGCGT < 1:13173028/35‑1 aaaCCCCGCTGGTGTGTGCGTGGGCAAACAGCGTA < 1:5099653/32‑1 aaaCCCCGCTGGTGTGTGCGTGGGCAAACAGCGTA < 1:17264953/32‑1 aaCCCCGCTGGTGTGTGCGTGGGCAAACAGCGTAA < 1:11868339/33‑1 aCCCCGCTGGTGTGTGCGTGGGCAAACAGCGTAAT < 1:2368409/34‑1 CCCCGCTGGTGTGTGCGTGGGCAAACAGCGTAATG < 1:9531926/35‑1 CCCGCTGGTGTGTGCGTGGGCAAACAGCGTAATGA < 1:4268382/35‑1 CCCGCTGGTGTGTGCGTGGGCAAACAGCGTAATGA < 1:18977593/35‑1 CCCGCTGGTGTGTGCGTGGGCAAACAGCGTAATGA < 1:33062/35‑1 CCCGCTGGTGTGTGCGTGGGCAAACAGCGTAATGA < 1:16769424/35‑1 CCCGCTGGTGTGTGCGTGGGCAAACAGCGTAATGA < 1:1451961/35‑1 CCGCTGGTGTGTGCGTGGGCAAACAGCGTAATGAC < 1:20373087/35‑1 CCGCTGGTGTGTGCGTGGGCAAACAGCGTAATGAC < 1:13168470/35‑1 CGCTGGTGTGTGCGTGGGCAAACAGCGTAATGACA < 1:2806690/35‑1 CGCTGGTGTGTGCGTGGGCAAACAGCGTAATGACA > 1:8623612/1‑35 CGCTGGTGTGTGCGTGGGCAAACAGCGTAATGACA > 1:2652928/1‑35 CGCTGGTGTGTGCGTGGGCAAACAGCGTAATGACA < 1:12306852/35‑1 CGCTGGTGTGTGCGTGGGCAAACAGCGTAATGACA > 1:13098984/1‑35 CGCTGGTGTGTGCGTGGGCAAACAGCGTAATGACA > 1:13637039/1‑35 CGCTGGTGTGTGCGTGGGCAAACAGCGTAATGACA < 1:16811368/35‑1 CGCTGGTGTGTGCGTGGGCAAACAGCGTAATGACA > 1:579036/1‑35 CGCTGGTGTGTGCGTGGGCAAACAGCGTAATGACA > 1:5874711/1‑35 GCTGGTGTGTGCGTGGGCAAACAGCGTAATGACAA > 1:16942207/1‑35 GCTGGTGTGTGCGTGGGCAAACAGCGTAATGACAA > 1:6643591/1‑35 GCTGGTGTGTGCGTGGGCAAACAGCGTAATGACAA > 1:1504966/1‑35 GCTGGTGTGTGCGTGGGCAAACAGCGTAATGACAA > 1:17616631/1‑35 GCTGGTGTGTGCGTGGGCAAACAGCGTAATGACAA < 1:19133161/35‑1 GCTGGTGTGTGCGTGGGCAAACAGCGTAATGACAA < 1:19770199/35‑1 GCTGGTGTGTGCGTGGGCAAACAGCGTAATGACAA < 1:11362318/35‑1 GCTGGTGTGTGCGTGGGCAAACAGCGTAATGACAA < 1:11706261/35‑1 CTGGTGTGTGCGTGGGCAAACAGCGTAATGACAAA > 1:12233020/1‑35 CTGGTGTGTGCGTGGGCAAACAGCGTAATGACAAA > 1:17815271/1‑35 CTGGTGTGTGCGTGGGCAAACAGCGTAATGACAAA < 1:1469523/35‑1 CTGGTGTGTGCGTGGGCAAACAGCGTAATGACAAA > 1:6379777/1‑35 TGGTGTGTGCGTGGGCAAACAGCGTAATGACAAAG > 1:7980505/1‑35 TGGTGTGTGCGTGGGCAAACAGCGTAATGACAAAG > 1:3360865/1‑35 TGGTGTGTGCGTGGGCAAACAGCGTAATGACAAAG > 1:968039/1‑35 TGGTGTGTGCGTGGGCAAACAGCGTAATGACAAAG < 1:10130338/35‑1 TGGTGTGTGCGTGGGCAAACAGCGTAATGACAAAG > 1:274186/1‑35 TGGTGTGTGCGTGGGCAAACAGCGTAATGACAAAG > 1:10638718/1‑35 TGGTGTGTGCGTGGGCAAACAGCGTAATGACAAAG > 1:16876651/1‑35 TGGTGTGTGCGTGGGCAAACAGCGTAATGACAAAG < 1:16131602/35‑1 TGGTGTGTGCGGGGGCAAACAGCGTAATGACAAAG < 1:13551364/35‑1 GGTGTGTGCGTGGGCAAACAGCGTAATGACAAAGa > 1:9007572/1‑34 GGTGTGTGCGTGGGCAAACAGCGTAATGACAAAGT < 1:12117025/35‑1 GGTGTGTGCGTGGGCAAACAGCGTAATGACAAAGT > 1:1338870/1‑35 GGTGTGTGCGTGGGCAAACAGCGTAATGACAAAGT < 1:14932280/35‑1 GGTGTGTGCGTGGGCAAACAGCGTAATGACAAAGT < 1:15433696/35‑1 GTGTGTGCGTGGGCAGACAGCGTAATGACAAAGTC < 1:4370727/35‑1 GTGTGTGCGTGGGCAAACAGCGTAATGACAAAGTC > 1:14920818/1‑35 GTGTGTGCGTGGGCAAACAGCGTAATGACAAAGTC < 1:4702693/35‑1 GTGTGTGCGTGGGCAAACAGCGTAATGACAAAGTC < 1:11109301/35‑1 TGTGTGCGTGGGCAAACAGCGTAATGACAAAGTCG < 1:17337937/35‑1 TGTGTGCGTGGGCAAACAGCGTAATGACAAAGTCG < 1:7427905/35‑1 TGTGTGCGTGGGCAAACAGCGTAATGACAAAGTCG < 1:3249631/35‑1 GTGTGCGTGGGCAAACAGCGTAATGACAAAGTCGC > 1:18603019/1‑35 TGTGCGTGGGCAAACAGCGTAATGACAAAGTCGCG < 1:5699525/35‑1 TGTGCGTGGGCAAACAGCGTAATGACAAAGTCGCG < 1:16854158/35‑1 TGTGCGTGGGCAAACAGCGTAATGACAAAGTCGCG > 1:15174883/1‑35 TGTGCGTGGGCAAACAGCGTAATGACAAAGTCGCG > 1:13832680/1‑35 TGTGCGTGGGCAAACAGCGTAATGACAAAGTCGCG < 1:1860485/35‑1 TGTGCGTGGGCAAACAGCGTAATGACAAAGTCGCG > 1:8077655/1‑35 TGTGCGTGGGCAAACAGCGTAATGACAAAGTCGCG > 1:18924560/1‑35 TGTGCGTGGGCAAACAGCGTAATGACAAAGTCGCG < 1:2446258/35‑1 CAGACTCAGAGGCATCATCATTGAAAAACAACCCCCGCTGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1924738‑1924695 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctggtgtGTGCGTGGGCAAACAGCGTAATGACAAAGTCGCG < REL606/2696376‑2696343 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |