New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3265224 =32 (0.310)6 (0.070) 3/38 NT 9.0% coding (1028/1434 nt) dacB D‑alanyl‑D‑alanine carboxypeptidase
?REL606 = 3603631 96 (1.180)coding (778/1014 nt) yhjD conserved inner membrane protein

Only 100 of 166 total aligned reads displayed.

CTTCTGGCGGTTGCCGCGCCACCGTCCGCGCAAAAAAGCCCTGATTCGCGGAACATTTCTGGCTGCTAT  >  REL606/3603597‑3603665
                                  |                                  
cttctGGCGGTTGCCGCGCCACCGTCCGCGCaaaa                                    <  1:5897536/35‑1 (MQ=255)
cttctGGCGGTTGCCGCGCCACCGTCCGCGCaaaa                                    <  1:20555687/35‑1 (MQ=255)
 ttcgGGCGTTTGCCGCGCCACCGTCCGCGCaaaaa                                   <  1:12071865/35‑1 (MQ=37)
 ttCTGGCGGTTGCCGCGCCACCGTCCGCGCAAAAa                                   >  1:8684602‑M2/1‑34 (MQ=255)
 ttCGGGCGGTTGCCGCGCCACCGTCCGCGCAAAAa                                   >  1:13517834‑M2/1‑34 (MQ=255)
  tCTGGCGGTTGCCGCGCCACCGTGCGCGCAAAAaa                                  >  1:1373533‑M2/1‑33 (MQ=255)
     ggCGTTTGCCGCGCCACCGTCCGCGCAAAAaagcc                               >  1:4416670‑M2/1‑30 (MQ=255)
       cGGTTGCCGCGCCACCGTCCGCGCAAAAAAGCCCt                             <  1:774238/35‑1 (MQ=255)
       cGGTTGCCGCGCCACCGTCCGCGCAAAAAAGCCCt                             >  1:11736260/1‑35 (MQ=255)
       cGGTTGCCGCGCCACCGTCCGCGCAAAAAAGCCCt                             >  1:1701708/1‑35 (MQ=255)
        ggTTGCCGCGCCACCGTCCGCGCAAAAAAGCCCTg                            <  1:18949337/35‑1 (MQ=255)
        ggTTGCCGCGCCACCGTCCGCGCAAAAAAGCCCTg                            >  1:10619614/1‑35 (MQ=255)
        ggTTGCCGCGCCACCGTCCGCGCAAAAAAGCCCTg                            >  1:12332523/1‑35 (MQ=255)
        ggTTGCCGCGCCACCGTCCGCGCAAAAAAGCCCTg                            >  1:4145026/1‑35 (MQ=255)
        ggTTGCCGCGCCACCGTCCGCGCAAAAAAGCCCTg                            >  1:15332604/1‑35 (MQ=255)
        ggTTGCCGCGCCACCGTCCGCGCAAAAAAGCCCTg                            <  1:13921828/35‑1 (MQ=255)
         gTTGCCGCGCCACCGTCCGCGCAAAAAAGCCCTGa                           >  1:3807848/1‑35 (MQ=255)
         gTTGCCGCGCCACCGTCCGCGCAAAAAAGCCCTGa                           <  1:6445318/35‑1 (MQ=255)
          ttGCTGCGCCACCGTCCGCGCAAAAAAGCCCTGAt                          >  1:14120177/1‑35 (MQ=255)
          ttGCCGCGCCACCGTCCGCGCAAAAAAGCCCTGAt                          >  1:20004297/1‑35 (MQ=255)
          ttGCCGCGCCACCGTCCGCGCAAAAAAGCCCTGAt                          <  1:17166746/35‑1 (MQ=255)
           tGCCGCGCCGCCGTCCGCGCAAAAAAGCCCTGAtt                         <  1:14657826/35‑1 (MQ=255)
           tGCCGCGCCACCGTCCGCGCAAAAAAGCCCTGAtt                         >  1:17119173/1‑35 (MQ=255)
            gCCGCGCCACCGTCCGCGCAAAAAAGCCCTGATTc                        <  1:12882959/35‑1 (MQ=255)
            gCCGCGCCACCGTCCGCGCAAAAAAGCCCTGATTc                        <  1:13373769/35‑1 (MQ=255)
            gCCGCGCCACCGTCCGCGCAAAAAAGCCCTGATTc                        <  1:4061324/35‑1 (MQ=255)
             ccGCGCCACCGTCCGCGCAAAAAAGCCCTGATTcg                       >  1:2519913/1‑35 (MQ=255)
             ccGCGCCACCGTCCGCGCAAAAAAGCCCTGATTcg                       <  1:19650695/35‑1 (MQ=255)
             ccGCGCCACCGTCCGCGCAAAAAAGCCCTGATTcg                       >  1:9483156/1‑35 (MQ=255)
             ccGCGCCACCGTCCGCGCAAAAAAGCACTGATTcg                       <  1:13639637/35‑1 (MQ=255)
              cgcgCCACCGTCCGCGCAAAAAAGCCCTGATTcgc                      <  1:13907597/35‑1 (MQ=255)
              cgcgCCACCGTCCGCGCAAAAAAGCCCTGATTcgc                      >  1:16480607/1‑35 (MQ=255)
              cgcgCCACCGTCCGCGCAAAAAAGCCCTGATTcgc                      <  1:13239348/35‑1 (MQ=255)
              cgcgCCACCGTCCGCGCAAAAAAGCCCTGATTcgc                      <  1:12693555/35‑1 (MQ=255)
              cgcgCCACCGTCCGCGCAAAAAAGCCCTGATTcgc                      >  1:8090068/1‑35 (MQ=255)
              cgcgCCACCGTCCGCGCAAAAAAGCACTGATTcgc                      <  1:8260398/35‑1 (MQ=255)
               gcgcCACCGTCCGCGCAAAAAAGCCCTGATTcgcg                     <  1:13840706/35‑1 (MQ=255)
               gcgcCACCGTCCGCGCAAAAAAGCCCTGATTcgcg                     <  1:12381583/35‑1 (MQ=255)
                cgcCACCGTCCGCGCAAAAAAGCCCTGATTCGCgg                    >  1:4448549/1‑35 (MQ=255)
                cgcCACCGTCCGCGCAAAAAAGCCCTGATTCGCgg                    <  1:17554624/35‑1 (MQ=255)
                 gcCACCGTCCGCGCAAAAAAGCCCTGATTCGCGGa                   <  1:7279092/35‑1 (MQ=255)
                 gcCACCGTCCGCGCAAAAAACCCCTGATTCGCGGa                   >  1:2600539/1‑35 (MQ=255)
                  ccACCGTCCGCGCAAAAAAGCCCTGATTCGCGGaa                  >  1:12545431/1‑35 (MQ=255)
                  ccACCGTCCGCGCAAAAAAGCCCTGATTCGCGGaa                  <  1:7581746/35‑1 (MQ=255)
                   cACCGTCCGCGCAAAAAAGCCCTGATTCGCGGAAc                 >  1:10952141/1‑35 (MQ=255)
                   cACCGTCCGCGCAAAAAAGCCCTGATTCGCGGAAc                 <  1:18784718/35‑1 (MQ=255)
                    aCCGTCCGCGCAAAAAAGCCCTGATTCGCGGAACa                >  1:15342904/1‑35 (MQ=255)
                    aCCGTCCGCGCAAAAAAGCCCTGATTCGCGGAACa                >  1:6741013/1‑35 (MQ=255)
                    aCCGTCCGCGCAAAAAAGCCCTGATTCGCGGAACa                <  1:17371989/35‑1 (MQ=255)
                    aCCGTCCGCGCAAAAAAGCCCTGATTCGCGGAACa                >  1:18124261/1‑35 (MQ=255)
                     ccGTCCGCGCAAAAAAGCCCTGATTCGCGGAACAt               <  1:18244977/35‑1 (MQ=255)
                     ccGTCCGCGCAAAAAAGCCCTGATTCGCGGAACAt               >  1:14750378/1‑35 (MQ=255)
                      cGTCCGCGCAAAAAAGCCCTGATTCGCGGAACAtt              >  1:19131542/1‑35 (MQ=255)
                      cGTCCGCGCAAAAAAGCCCTGATTCGCGGAACAtt              <  1:17469369/35‑1 (MQ=255)
                      cGTCCGCGCAAAAAAGCCCTGATTCGCGGAACAtt              <  1:461002/35‑1 (MQ=255)
                       gTCCGCGCAAAAAAGCCCTGATTCGCGGAACAttt             <  1:18428955/35‑1 (MQ=255)
                       gTCCGCGCAAAAAAGCCCTGATTCGCGGAACAttt             <  1:8862892/35‑1 (MQ=255)
                       gTCCGCGCAAAAAAGCCCTGATTCGCGGAACAttt             <  1:16246272/35‑1 (MQ=255)
                        cgtgcgcaaaAaagccggtgtcgatattggaaaca            >  1:10545634‑M2/4‑11 (MQ=255)
                         ccGCGCTAAAAAGCCCTGATTCGCGGAACATTTCt           <  1:5057024/35‑1 (MQ=255)
                         ccGCGCAAAAAAGCCCTGATTCGCGGAACATTTCt           <  1:10142883/35‑1 (MQ=255)
                         ccGCGCAAAAAAGCCCTGATTCGCGGAACATTTCt           <  1:5573247/35‑1 (MQ=255)
                         ccGCGCAAAAAAGCCCTGATTCGCGGAACATTTCt           <  1:5426958/35‑1 (MQ=255)
                         ccGCGCAAAAAAGCCCTGATTCGCGGAACATTTCt           <  1:14393216/35‑1 (MQ=255)
                          cgcgCAAAAAAGCCCTGATTCGCGGAACATTTCTg          <  1:8924635/35‑1 (MQ=255)
                          cgcgCAAAAAAGCCCTGATTCGCGGAACATTTCTg          <  1:13021724/35‑1 (MQ=255)
                          cgcgCAAAAAAGCCCTGATTCGCGGAACATTTCTg          <  1:19585876/35‑1 (MQ=255)
                          cgcgCAAAAAAGCCCTGATTCGCGGAACATTTCTg          <  1:20396840/35‑1 (MQ=255)
                          cgcgCAAAAAAGCCCTGATTAGCGGAACATTTCTg          <  1:17106610/35‑1 (MQ=255)
                           gcgcAAAAAAGCCCTGATTCGCGGAACATTTCTgg         <  1:2505451/35‑1 (MQ=255)
                           gcgcAAAAAAGCCCTGATTCGCGGAACATTTCTgg         >  1:10172354/1‑35 (MQ=255)
                           gcgcAAAAAAGCCCTGATTCGCGGAACATTTCTgg         <  1:4762925/35‑1 (MQ=255)
                           gcgcAAAAAAGCCCTGATTCGCGGAACATTTCTgg         <  1:5943846/35‑1 (MQ=255)
                            cgcAAAAaagccggtgtcgatattggaaacaccat        >  1:16740330‑M2/1‑7 (MQ=255)
                            cgcAAAAAAGCCCTGATTCGCGGAACATTTCTGgc        >  1:11758690/1‑35 (MQ=255)
                             gcAAAAAAGCCCTGATTCGCGGAACATTTCTGgct       <  1:7812705/35‑1 (MQ=255)
                             gcAAAAAAGCCCTGATTCGCGGAACATTTCTGgct       <  1:11482387/35‑1 (MQ=255)
                             acaAAAaagccggtgtcgatattggaaacaccatt       >  1:7882598‑M2/2‑6 (MQ=255)
                              cAAAAAAGCCCTGATTCGCGGGACATTTCTGgctg      >  1:6744989/1‑35 (MQ=255)
                              cAAAAAAGCCCTGATTCGCGGAACATTTCTGgctg      >  1:731666/1‑35 (MQ=255)
                              acaaaaagccggtgtcgatattggaaacaccatta      >  1:13024536‑M2/3‑5 (MQ=255)
                               gagaaagccggtgtcgatattggaaacaccattat     >  1:14533975‑M2/4‑4 (MQ=255)
                               aaaaaagccggtgtcgatattggaaacaccattat     >  1:7095330‑M2/1‑4 (MQ=255)
                               aaaaaagccggtgtcgatattggaaacaccattat     >  1:17684407‑M2/1‑4 (MQ=255)
                               aaaaaaGCCCTGATTCGCGGAACATTTCTGgctgc     >  1:12345512/1‑35 (MQ=255)
                                aaaaagccggtgtcgatattggaaacaccattatt    >  1:4955848‑M2/1‑3 (MQ=255)
                                aaaaaGCCCTGATTCGCGGAACATTTCTGgctgct    <  1:1767400/35‑1 (MQ=255)
                                aaaaaGCCCTGATTCGCGGAACATTTCTGgctgct    <  1:15562808/35‑1 (MQ=255)
                                aaaaaGCCCTGATTCGCGGAACATTTCTGgctgct    >  1:15047836/1‑35 (MQ=255)
                                 aaaaGCCCTGATTCGCGGAACATTTCTGGCTGGTa   >  1:13126580/1‑35 (MQ=255)
                                 aaaaGCCCTGATTCGCGGAACATTTCTGGCTGCTa   >  1:527333/1‑35 (MQ=255)
                                 aaaaGCCCTGATTCGCGGAACATTTCTGGCTGCTa   >  1:7717479/1‑35 (MQ=255)
                                 aaaaGCCCTGATTCGCGGAACATTTCTGGCTGCTa   <  1:11051436/35‑1 (MQ=255)
                                 aaaaGCCCTGATTCGCGGAACATTTCTGGCTGCTa   >  1:10523582/1‑35 (MQ=255)
                                  aaagccggtgtcgatattggaaacaccattattgc  >  1:5477107‑M2/1‑1 (MQ=255)
                                  aaagccggtgtcgatattggaaacacaattattgc  >  1:4903020‑M2/1‑1 (MQ=255)
                                  aaaGCCCTGATTCGCGGAACATTTCTGGCTGCTAt  >  1:20243816/1‑35 (MQ=255)
                                  aaaGCCCTGATTCGCGGAACATTTCTGGCTGCTAt  <  1:7620368/35‑1 (MQ=255)
                                  aaaGCCCTGATTCGCGGAACATTTCTGGCTGCTAt  <  1:4660365/35‑1 (MQ=255)
                                  aaaGCCCTGATTCGCGGAACATTTCTGGCTGCTAt  >  1:8436116/1‑35 (MQ=255)
                                  |                                  
CTTCTGGCGGTTGCCGCGCCACCGTCCGCGCAAAAAAGCCCTGATTCGCGGAACATTTCTGGCTGCTAT  >  REL606/3603597‑3603665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.