New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 197679 =131 (1.270)16 (0.200) 5/38 NT 15.6% intergenic (+120/‑66) ispC/uppS 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase/undecaprenyl pyrophosphate synthase
?REL606 2304413 = 69 (0.850)coding (802/903 nt) yfaD hypothetical protein

Only 100 of 229 total aligned reads displayed.

GCTTTATAAGGTCAGGTATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGT  >  REL606/197645‑197713
                                  |                                  
gCTTTATAAGGTCAGGTATGCCGTGGTTTTACACg                                    <  1:14750407/35‑1 (MQ=255)
gCTTTATAAGGTCAGGTATGCCGTGGTTTTACACg                                    >  1:16999177/1‑35 (MQ=255)
agccctgttccagcatgcgcaaagcaattttaatg                                    >  1:6529238‑M1/35‑35 (MQ=255)
agccctgttccagcatgcgcaaagcaattttaatg                                    <  1:16235733‑M1/1‑1 (MQ=255)
agccctgttccagcatgcgcaaagcaattttaatg                                    >  1:11291901‑M1/35‑35 (MQ=255)
 gccctgttccagcatgcgcaaagcaattttaatgg                                   <  1:9426481‑M1/2‑1 (MQ=255)
 gccctgttccagcatgcgcaaagcaattttaatgg                                   >  1:8436387‑M1/34‑35 (MQ=255)
 gccctgttccagcatgcgcaaagcaattttaatgg                                   >  1:11605526‑M1/34‑35 (MQ=255)
 gccctgttccagcatgcgcaaagcaattttaatgg                                   >  1:6700650‑M1/34‑35 (MQ=255)
 cTTTATAAGGTCAGGTATGCCGTGGTTTTACACgg                                   <  1:3025075/35‑1 (MQ=255)
 cTTTATAAGGTCAGGTATGCCGTGGTTTTACACgg                                   >  1:8379996/1‑35 (MQ=255)
 cTTTATAAGGTCAGGTATGCCGTGGTTTTACACgg                                   <  1:11110224/35‑1 (MQ=255)
  tttATAAGGTCAGGTATGCCGTGGTTTTACACGGc                                  >  1:4460527/1‑35 (MQ=255)
   ttATAAGGTCAGGTATGCCGTGGTTTTACACGGCt                                 <  1:2635532/35‑1 (MQ=255)
   ttATAAGGTCAGGTATGCCGTGGTTTTACACGGCt                                 <  1:13360481/35‑1 (MQ=255)
   cctgttccagcatgcgcaaagcaattttaatGGCt                                 >  1:5605454‑M1/32‑35 (MQ=255)
   cctgttccagcatgcgaaaagcaattttaatGGCt                                 >  1:6984188‑M1/32‑35 (MQ=255)
    tataAGGTCAGGTATGCCGTGGTTTTACACGGCtt                                <  1:5118311/35‑1 (MQ=255)
    tataAGGTCAGGTATGCCGTGGTTTTACACGGCtt                                <  1:96146/35‑1 (MQ=255)
    ctgttccagcatgcgcaaagcaattttaatGGCtt                                >  1:4587283‑M1/31‑35 (MQ=255)
    ctgttccagcatgcgcaaagcaattttaatGGCtt                                <  1:8802555‑M1/5‑1 (MQ=255)
     tgttccagcatgcgcaaagcaattttaatGGCttt                               <  1:17197062‑M1/6‑1 (MQ=255)
     ataAGGTCAGGTATGCCGTGGTTTTACACGGCttt                               <  1:18068191/35‑1 (MQ=255)
     ataAGGTCAGGTATGCCGTGGTTTTACACGGCttt                               <  1:15564586/35‑1 (MQ=255)
      taAGGTCAGGTATGCCGTGGTTTTACACGGCtttt                              >  1:3172591/1‑35 (MQ=255)
      taAGGTCAGGTATGCCGTGGTTTTACACGGCtttt                              >  1:20466666/1‑35 (MQ=255)
      taAGGTCAGGTATGCCGTGGTTTTACACGGCtttt                              <  1:20295610/35‑1 (MQ=255)
      taAGGTCAGGTATGCCGTGGTTTTACACGGCtttt                              >  1:15071713/1‑35 (MQ=255)
      gttccagcatgcgcaaagcaattttaatGGCtttt                              <  1:10373714‑M1/7‑1 (MQ=255)
      gttccagcatgcgcaaagcaattttaatGGCtttt                              <  1:8132584‑M1/7‑1 (MQ=255)
       ttccagcatgcgcaaagcaattttaatGGCttttt                             <  1:14206558‑M1/8‑1 (MQ=255)
       aaGGTCAGGTATGCCGTGGTTTTACACGGCttttt                             <  1:7164671/35‑1 (MQ=255)
       aaGGTCAGGTATGCCGTGGTTTTACACGGCttttt                             >  1:19753345/1‑35 (MQ=255)
       aaGGTCAGGTATGCCGTGGTTTTACACGGCttttt                             <  1:18782632/35‑1 (MQ=255)
       aaGGTCAGGTATGCCGTGGTTTTACACGGCttttt                             <  1:1572568/35‑1 (MQ=255)
        tccagcatgcgcaaagcaattttaatGGctttttc                            <  1:2356368‑M1/9‑2 (MQ=255)
        aGGTCAGGTATGCCGTGGTTTTACACGGCtttttt                            <  1:18215051/35‑1 (MQ=255)
         ggTCAGGTATGCCGTGGTTTTACACGGCttttttt                           >  1:14488187/1‑35 (MQ=255)
         ggTCAGGTATGCCGTGGTTTTACACGGCttttttt                           >  1:1248110/1‑35 (MQ=255)
         ggTCAGGTATGCCGTGGTTTTACACGGCttttttt                           <  1:11259140/35‑1 (MQ=255)
         ccagcatgcgcaaagcaattttaatGGCttttttt                           <  1:566140‑M1/10‑1 (MQ=255)
          gTCAGGTATGCCGTGGTTTTACACGGCtttttttt                          <  1:11777235/35‑1 (MQ=255)
          gTCAGGTATGCCGTGGTTTTACACGGCtttttttt                          <  1:12221208/35‑1 (MQ=255)
          cagcatgcgcaaagcaattttaatGGCtttttttt                          <  1:13410027‑M1/11‑1 (MQ=255)
           tCAGGTATGCCGTGGTTTTACACGGCTTTTTTTTg                         >  1:4390797/1‑35 (MQ=255)
           agcatgcgcaaagcaattttaatGGcttttttttt                         <  1:7131981‑M1/12‑2 (MQ=255)
           agcatgcgcaaagcaattttaatGGCTTTTTCTTg                         <  1:1576256‑M1/12‑1 (MQ=255)
            gcatgcgcaaagcaattttaatGGCTTTTTTTTGt                        <  1:3325174‑M1/13‑1 (MQ=255)
            cAGGTATGCCGTGGTTTTACACGGCTTTTTTTTGt                        <  1:3628799/35‑1 (MQ=255)
             catgcgcaaagcaattttaatggctttttttttca                       <  1:15233189‑M1/14‑4 (MQ=255)
             aGGTATGCCGTGGTTTTACACGGCTTTTTTTTGta                       <  1:14394237/35‑1 (MQ=255)
              ggTATGCCGTGGTTTTACACGGCTTTTTTTTGtat                      >  1:19946031/1‑35 (MQ=255)
              ggTATGCCGTGGTTTTACACGGCTTTATTTTGtat                      >  1:2178493/1‑35 (MQ=255)
              atgcgcaaagcaattttaatGGCTTTTTtttgcat                      <  1:1939286‑M1/15‑4 (MQ=255)
               tgcgcaaagcaattttaatGGCTTTTTTTTGcata                     <  1:16130143‑M1/16‑1 (MQ=255)
                tATGCCGTGGTTTTACACGGCTTTTTTTTGTATAg                    <  1:4892532/35‑1 (MQ=255)
                tATGCCGTGGTTTTACACGGCTTTTTTTTGTATAg                    >  1:5402970/1‑35 (MQ=255)
                gcgcaaagcaattttaatGGCTTTTTTTTgcatac                    <  1:5762618‑M1/17‑2 (MQ=255)
                 aTGCCGTGGTTTTACACGGCTTTTTTTTGTATAgg                   <  1:8326004/35‑1 (MQ=255)
                  tGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGc                  >  1:13001150/1‑35 (MQ=255)
                  tGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGc                  <  1:14267863/35‑1 (MQ=255)
                  tGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGc                  >  1:12641514/1‑35 (MQ=255)
                   gCCGTGGTTTTACACGGCTTTTTTTTTTATAGGCt                 >  1:19376259/1‑35 (MQ=255)
                   gCCGTGGTTTTACACGGCTTTTTTTTTTATAGGCt                 >  1:18921004/1‑35 (MQ=255)
                   gCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCt                 <  1:16585282/35‑1 (MQ=255)
                   gCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCt                 <  1:9204421/35‑1 (MQ=255)
                   gCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCt                 <  1:19054702/35‑1 (MQ=255)
                   gCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCt                 <  1:9057360/35‑1 (MQ=255)
                    ccGTGGTTTTACACGGCTTTTTTTTGTATAGGCtt                >  1:749345/1‑35 (MQ=255)
                    ccGTGGTTTTACACGGCTTTTTTTTGTATAGGCtt                <  1:16721479/35‑1 (MQ=255)
                    ccGTGGTTTTACACGGCTTTTTTTTGTATAGGCtt                <  1:4871132/35‑1 (MQ=255)
                    ccGTGGTTTTACACGGCTTTTTTTTGTATAGGCtt                >  1:10587796/1‑35 (MQ=255)
                    ccGTGGTTTTACACGGCTTTTTTTTGTATAGGCtt                >  1:17422301/1‑35 (MQ=255)
                    ccGTGGTTTTACACGGCTTTTTTTTGTATAGGCtt                <  1:15488345/35‑1 (MQ=255)
                     cGTGGTTTTACACGGCTTTTTTTTGTATAGGCttt               >  1:17037885/1‑34 (MQ=255)
                     cGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTc               <  1:9503300/35‑1 (MQ=255)
                     cGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTc               <  1:14564397/35‑1 (MQ=255)
                     cGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTc               <  1:1050177/35‑1 (MQ=255)
                     cGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTc               <  1:17306902/35‑1 (MQ=255)
                      gTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCa              <  1:11408050/35‑1 (MQ=255)
                      gTGGTTTTACACGGCTTTTTTTTGTAAAAGCtttt              >  1:7785696/1‑33 (MQ=25)
                       tGGTTTTACACGGCTTTTTTTTGTATAGGCtttcg             >  1:10079857/1‑32 (MQ=255)
                       tGGTTTTACACGGCTTTTTTTTGTATAGGCTTTAg             >  1:11924700/1‑35 (MQ=255)
                       tGGTTTTACACGGCTTTTTTTTGTATAGGCTTTAg             >  1:246930/1‑35 (MQ=255)
                       tGGTTTTACACGGCTTTTTTTTGTATAGGCTTTAg             >  1:15367226/1‑35 (MQ=255)
                       tGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAg             <  1:6143224/35‑1 (MQ=255)
                       tGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAg             <  1:5973511/35‑1 (MQ=255)
                       tGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAg             <  1:13544995/35‑1 (MQ=255)
                       tGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAg             <  1:18556608/35‑1 (MQ=255)
                        ggTTTTACACGGCTTTTTTTTGTATAGGCTTCAGt            <  1:5144445/35‑1 (MQ=255)
                         gTTTTACACGGCTTTTTTTTGTATAGGATTCAGTa           <  1:2886895/35‑1 (MQ=255)
                          ttttACACGGCTTTTTTTTGTATAGGCTTCAGTAt          <  1:3900723/35‑1 (MQ=255)
                             tACACGGCTTTTTTTTGTATAGGCTTTAGTATTcc       >  1:19959518/1‑35 (MQ=255)
                             tACACGGCTTTTTTTTGTATAGGCTTCAGTATTcc       <  1:7654536/35‑1 (MQ=255)
                              acacGGCTTTTTTTTGTATAGGCTTTAGTATTCCt      >  1:19116242/1‑35 (MQ=255)
                                acGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGa    <  1:14997052/35‑1 (MQ=255)
                                acGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGa    <  1:9874816/35‑1 (MQ=255)
                                 cGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAg   <  1:17887331/35‑1 (MQ=255)
                                 cGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAg   <  1:4035014/35‑1 (MQ=255)
                                  GGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGt  >  1:3505078‑M1/1‑35 (MQ=255)
                                  |                                  
GCTTTATAAGGTCAGGTATGCCGTGGTTTTACACGGCTTTTTTTTGTATAGGCTTCAGTATTCCTGAGT  >  REL606/197645‑197713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.