New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3579044 =7 (0.070)29 (0.320) 6/42 NT 37.4% intergenic (+703/‑174) gor/arsR glutathione reductase/DNA‑binding transcriptional repressor
?REL606 3912266 = 91 (1.010)intergenic (+46/‑94) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

TCTGAATCAGGACGTAAAAAAACCGACTTTGCGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3579080‑3579044
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGTTTTTTTTGACCTTAAAAACATAACCGAGGA  >  REL606/3912266‑3912299
                                                                       
TCTGAATCAGGACGTAAAAAAACCGACTTTGCGTC                                      >  1:2295140/1‑35
TCTGAATCAGGACGTAAAAAAACCGACTTTGCGTC                                      <  1:3347214/35‑1
TCTGAATCAGGACGTAAAAAAACCGACTTTGCGTC                                      <  1:3431910/35‑1
 CTGAATCAGGACGTAAAAAAACCGACTTTGCGTCt                                     >  1:1986585/1‑34
 CTGAATCAGGACGTAAAAAAACCGACTTTGCGTCG                                     >  1:20117435/1‑35
 CTGAATCAGGACGTAAAAAAACCGACTTTGCGTCG                                     <  1:619678/35‑1
 CTGAATCAGGACGTAAAAAAACCGACTTTGCGTCG                                     >  1:7161023/1‑35
  TGAATCAGGACGTAAAAAACCCGACTTTGCGTCGG                                    <  1:19252102/35‑1
  TGAATCAGGACGTAAAAAAACCGACTTTGCGTCGG                                    >  1:11365532/1‑35
  TGAATCAGGACGTAAAAAAACCGACTTTGCGTCGG                                    >  1:618078/1‑35
  TGAATCAGGACGTAAAAAAACCGACTTTGCGTCGG                                    >  1:13851874/1‑35
   GAATCAGGGCGTAAAAAAACCGACTTTGCGTCGGG                                   >  1:18917529/1‑35
   GAATCAGGACGTAAAAAAACCGACTTTGCGTCGGG                                   >  1:5650407/1‑35
   GAATCAGGACGTAAAAAAACCGACTTTGCGTCGGG                                   >  1:18850935/1‑35
    AATCAGGACGTAAAAAAACCGACTTTGCGTCGGGG                                  >  1:11958133/1‑35
    AATCAGGACGTAAAAAAACCGACTTTGCGTCGGGG                                  >  1:12905958/1‑35
    AATCAGGACGTAAAAAAACCGACTTTGCGTCGGGG                                  >  1:17803365/1‑35
    AATCAGGACGTAAAAAAACCGACTTTGCGTCGGGG                                  >  1:17621216/1‑35
       CAGGACGTAAAAAAACCGACTTTGCGTCGGGGGTT                               >  1:22503/1‑35
       CAGGACGTAAAAAAACCGACTTTGCGTCGGGGGTT                               >  1:10228574/1‑35
       CAGGACGTAAAAAAACCGACTTTGCGTCGGGGGTT                               >  1:10391893/1‑35
        AGGACGTAAAAAAACCGACTTTGCGTCGGGGGTTT                              >  1:13297866/1‑35
         GGACGTAAAAAAACCGACTTTGCGTCGGGGGTTTT                             >  1:7874944/1‑35
         GGACGTAAAAAAACCGACTTTGCGTCGGGGGTTTT                             >  1:2228251/1‑35
          gatGTAAAAAAACCGACTTTGCGTCGGGGGTTTTT                            >  1:16029394/4‑35
          gatGTAAAAAAACCGACTTTGCGTCGGGGGTTTTT                            >  1:13668181/4‑35
          GACGTAAAAAAACCGACTTTGCGTCGGGGTTTTTT                            >  1:4465072/1‑35
          GACGTAAAAAAACCGACTTTGCGTCGGGGTTTTTT                            >  1:12803477/1‑35
          GACGTAAAAAAACCGACTTTGCGTCGGGGGTTTTT                            >  1:6332442/1‑35
          GACGTAAAAAAACCGACTTTGCGTCGGGGGTTTTT                            >  1:3349282/1‑35
           atGTAAAAAAACCGACTTTGCGTCGGGGGTTTTTT                           >  1:14543029/3‑35
           ACGTAAAAAAACCGACTTTGCGTCGGGGTTTTTTT                           >  1:3779109/1‑35
           ACGTAAAAAAACCGACTTTGCGTCGGGGTTTTTTT                           >  1:17132352/1‑35
           ACGTAAAAAAACCGACTTTGCGTCGGGGTTTTTTT                           >  1:19103346/1‑35
           ACGTAAAAAAACCGACTTTGCGTCGGGGGTTTCTT                           >  1:20364417/1‑35
            tGTAAAAAAACCGACTTTGCGTCGGGGTTTTTTTT                          >  1:17608776/2‑35
            tGTAAAAAAACCGACTTTGCGTCGGGGTTTTTTTT                          >  1:10548250/2‑35
            tGTAAAAAAACCGACTTTGCGTCGGGGTTTTTTTT                          >  1:5616394/2‑35
            tGTAAAAAAACCGACTTTGCGTCGGGGGTTTTTTT                          >  1:18016948/2‑35
            CGTAAAAAAACCGACTTTGCGTCGGGGGTTTTTTT                          >  1:4512638/1‑35
             GTAAAAAAACCGACTTTGCGTCGGGGTTTTTTTTT                         >  1:5777297/1‑35
             GTAAAAAAACCGACTTTGCGTCGGGGGTTTTTTTT                         >  1:4203940/1‑35
             GTAAAAAAACCGACTTTGCGTCGGGGGTTTTTTTT                         >  1:2636996/1‑35
             GTAAAAAAACCGACTTTGCGTCGGGGGGTTTTTTT                         >  1:6647285/1‑35
              TAAAAAAACCGACTTTGCGTCGGGGTTTTTTTTTt                        >  1:13735473/1‑34
              TAAAAAAACCGACTTTGCGTCGGGGTTTTTTTTTt                        >  1:1295048/1‑34
              TAAAAAAACCGACTTTGCGTCGGGGTTTTTTTTTt                        >  1:20434416/1‑34
              TAAAAAAACCGACTTTGCGTCGGGGGTTTTTTTTt                        >  1:1403928/1‑34
              TAAAAAAACCGACTTTGCGTCGGGGGTTTTTTTTt                        >  1:2517252/1‑34
                AAAAAACCGACTTTGCGTCGGGGGTTTTTTTTttc                      >  1:10458309/1‑32
                                  CGGGGGTTTTTTTTGACCTTAAAAACATAACCGAG    >  1:3465158/1‑35
                                  CGGGGGTTTTTTTTGACCTTAAAAACATAACCGAG    <  1:7688306/35‑1
                                   GGGGGTTTTTTTTGACCTTAAAAACATAACCGAGG   >  1:13181208/1‑35
                                   GGGGCTTTTTTTTGACCTTAAAAACATAACCGAGG   >  1:13115441/1‑35
                                    GGGGTTTTTTTTGACCTTAAAAACATAACCGAGGA  <  1:5179373/35‑1
                                    GGGGTTTTTTTTGACCTTAAAAACATAACCGAGGA  <  1:15913581/35‑1
                                                                       
TCTGAATCAGGACGTAAAAAAACCGACTTTGCGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3579080‑3579044
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGTTTTTTTTGACCTTAAAAACATAACCGAGGA  >  REL606/3912266‑3912299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.