New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1183967102 (0.990)18 (0.180) 7/48 NT 19.3% intergenic (+43/+40) ycfR/ycfS hypothetical protein/hypothetical protein
?REL606 = 3012564 49 (0.480)coding (248/1020 nt) ECB_02814 conserved hypothetical protein

CTGATTTTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1183954‑1183967
‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGACATGCCCTGATTTACCCATTCCTGAAAGAA  <  REL606/3012564‑3012531
                                                
CTGACTTTTTCCCCCCGACATGCCCTGATTTACCC               <  1:19881503/35‑1
  gtTTTTTTCCCCCCGACATGCCCTGATTTACCCAT             <  1:5976034/33‑1
   cTTTTTCCCCCCCGACATGCCCTGATTTACCCATT            <  1:6435111/34‑1
   ATTTTTCCCCCCCGACATGCCCTGATTTACCCATT            <  1:12583644/35‑1
   ATTTTTCCCCCCCGACATGCCCTGATTTACCCATT            <  1:18387730/35‑1
    cTTTTCCCCCCCGACATGCCCTGATTTACCCATTC           <  1:17640164/34‑1
    aTTTTTCCCCCCGACATGCCCTGATTTACCCATTC           <  1:17617533/34‑1
    TTTTTCCCCCCCGACATGCCCTGATTTACCCATTC           <  1:9661755/35‑1
    TTTTTCCCCCCCGACATGCCCTGATTTACCCATTC           <  1:7897060/35‑1
    TTTTTCCCCCCCGACATGCCCTGATTTACCCATTC           <  1:19795009/35‑1
    TTTTTCCCCCCCGACATGCCCTGATTTACCCATTC           <  1:15703514/35‑1
    TTTTTCCCCCCCGACATGCCCTGATTTACCCATTC           <  1:14609295/35‑1
     TTTTCCCCCCCGACATGCCCTGATTTACCCATTCC          <  1:15009878/35‑1
     TTTTCCCCCCCGACATGCCCTGATTTACCCATTCC          <  1:9064727/35‑1
      TTTTCCCCCCGACATGCCCTGATTTACCCATTCCT         <  1:9118992/35‑1
      TTTCCCCCCCGACATGCCCTGATTTACCCATTCCT         <  1:13313666/35‑1
       ttcCCCCCCGACATGCCCTGATTTACCCATTCCTG        <  1:13560055/32‑1
       TTTACCCCCGACATGCCCTGATTTACCCATTCCTG        <  1:15240856/35‑1
        tgCCCCCCGACATGCCCTGATTTACCCATTCCTGA       <  1:13754556/33‑1
        ccCCCCCCGACATGCCCTGATTTACCCATTCCTGA       <  1:5796092/33‑1
        TTCCCCCCGACATGCCCTGATTTACCCATTCCTGA       <  1:17009617/35‑1
         cCCCCCCGACATGCCCTGATTTACCCATTCCTGAA      <  1:14659518/34‑1
         cCCCCCCGACATGCCCTGATTTACCCATTCCTGAA      <  1:8579810/34‑1
            CCCCGACATGCCCTGATTTACCCATTCCTGAAAGA   <  1:898843/35‑1
            CCCCGACATGCCCTGATTTACCCATTCCTGAAAGA   <  1:1125036/35‑1
             CCCGACATGCCCTGATTTACCCATTCCTGAAAGAA  <  1:18680286/35‑1
                                                
CTGATTTTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1183954‑1183967
‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGACATGCCCTGATTTACCCATTCCTGAAAGAA  <  REL606/3012564‑3012531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.