Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,776,434 | IS150 (–) +4 bp | 56.9% | intergenic (‑225/+56) | pheS ← / ← pheM | phenylalanyl‑tRNA synthetase alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1776434 = | 33 (0.390) | 48 (0.470) | 28/48 | NT | 54.8% | intergenic (‑225/+59) | pheS/pheM | phenylalanyl‑tRNA synthetase alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
* | ? | REL606 | = 1776437 | 33 (0.390) | 39 (0.380) | 21/48 | NT | 49.6% | intergenic (‑228/+56) | pheS/pheM | phenylalanyl‑tRNA synthetase alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region |
TTTCAAAACGCGCATACAAAAAAAGCCTCCACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1776404‑1776437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTT > REL606/2774435‑2774462 TTTCAAAACGCGCATACAAAAAAAGCCTNNACTGN > 1:10900953/1‑35 TTCAAAACGCGCATACAAAAAAAGCCTCCACTGTG > 1:17360307/1‑35 TTCAAAACGCGCATACAAAAAAAGCCTCCACTGTG > 1:4959412/1‑35 AAAACGCGCATACAAAAAAAGCCTCCACTGTGTAC > 1:16680911/1‑35 AAACGCGCATACAAAAAAAGCCTCCACTGTGTACT > 1:8988467/1‑35 AAACGCGCATACAAAAAAAGCCTCCACTGTGTACT > 1:12805942/1‑35 ACGCGCATACAAAAAAAGCCTCCACTGTGTACTGA > 1:20390632/1‑35 ACGCGCATACAAAAAAAGCCTCCACTGTGTACTGA > 1:3738545/1‑35 CGCGCATACAAAAAAAGCCTCCACTGTGTACTGAC > 1:103449/1‑35 GCGCATACAAAAAAAGCCTCCACTGTGTACTGACC > 1:2866294/1‑35 GCGCATACAAAAAAAGCCTCCACTGTGTACTGACC > 1:14164902/1‑35 CGCATACAAAAAAAGCCTCCACTGTGTACTGACCC > 1:20306764/1‑35 CGCATACAAAAAAAGCCTCCACTGTGTACTGACCC > 1:19073783/1‑35 GCATACAAAAAAAGCCTCCACTGTGTACTGACCCC > 1:16001335/1‑35 CATACAAAAAAAGCCTCCACTGTGTACTGACCCCA > 1:779258/1‑35 CATACAAAAAAAGCCTCCACTGTGTACTGACCCCA > 1:196451/1‑35 TACAAAAAAAGCCTCCACTGTGTACTGACTCCAAA > 1:12410630/1‑35 TACAAAAAAAGCCTCCACTGTGTACTGACCCCAAA > 1:11713723/1‑35 aaAAAAAAAGCCTCCACTGTGTACTGACCCCAAAA < 1:10568634/33‑1 aAAAAAAACCCTCCACTGTGTACTGACCCCAAAAA < 1:17696431/34‑1 CAAAAAAAGCCTCCACTGTGTACTGACCCCAAAAA > 1:6082655/1‑35 CAAAAAAAGCCTCCACTGTGTACTGACCCCAAAAA > 1:5825773/1‑35 AAAAAAAGCCTCCACTGTGTACTGACCCCAAAAAG > 1:8259866/1‑35 AAAAAAGCCTCCACTGTGTACTGACCCCAAAAAGT < 1:17336871/35‑1 AAAAAAGCCTCCACTGTGTACTGACCCCAAAAAGT > 1:14045052/1‑35 AAAAAAGCCTCCACTGTGTACTGACCCCAAAAAGT < 1:3235996/35‑1 AAAAGCCTCCACTGTGTACTGACCCCAAAAAGTTG > 1:14929060/1‑35 AAAAGCCTCCACTGTGTACTGACCCCAAAAAGTTG > 1:6394271/1‑35 AAAGCCTCCACTGTGTACTGACCCCAAAAAGTTGG < 1:8019388/35‑1 aacCCTCCACTGTGTACTGACCCCAAAAAGTTGGA < 1:5513946/32‑1 AAGCCTCCACTGTGTACTGACCCCAAAAAGTTGGA > 1:6397845/1‑35 AGCCTCAACTGTGTACTGACCCCAAAAAGTTGGAC < 1:5899527/35‑1 nnCTCNNCTGTGTACTGACCCCAAAAAGTTGGACA < 1:17347595/33‑1 cCCTCCACTGTGTACTGACCCCAAAAAGTTGGACA < 1:17666143/34‑1 GCCTCCACTGTGTACTGACCCCAAAAAGTTGGACA < 1:4777959/35‑1 aCTCCACTGTGTACTGACCCCAAAAAGTTGGACAG < 1:15208444/34‑1 CCTCCACTGTGTACTGACCCCAAAAAGTTGGACAG > 1:7522300/1‑35 CCTCCACTGTGTACTGACCCCAAAAAGTTGGACAG < 1:13429188/35‑1 ccCCACTGTGTACTGACCCCAAAAAGTTGGACAGT > 1:9347595/3‑35 CTCCACTGTGTACTGACCCCAAAAAGTTGGACAGT < 1:13448566/35‑1 CTCCACTGTGTACTGACCCCAAAAAGTTGGACAGT < 1:13475131/35‑1 CTCCACTGTGTACTGACCCCAAAAAGTTGGACAGT < 1:14723222/35‑1 TCCACTGTGTACTGACCCCAAAAAGTTGGACAGTT < 1:10346386/35‑1 TTTCAAAACGCGCATACAAAAAAAGCCTCCACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1776404‑1776437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTT > REL606/2774435‑2774462 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |