New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1 =0 (0.000)138 (1.340) 44/48 NT 100% intergenic (–/‑189) –/thrL –/thr operon leader peptide
?REL606 = 4629812 0 (0.000)intergenic (+24/–) lasT/– predicted rRNA methyltransferase/–

Only 100 of 172 total aligned reads displayed.

GACATATTGCCCGTTGCAGTCAGAATGAAAAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/34‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAAAATACTTACTAAGGCGTTTTTTATTTGGTG  <  REL606/4629812‑4629779
                                                                    
GACATATTGCCCGTTGCAGTCAGAATGAAAAGCTG                                   >  1:10155585/1‑35
GACATATTGCCCGTTGCAGTCAGAATGAAAAGCTG                                   >  1:9643794/1‑35
GACATATTGCCCGTTGCAGTCAGAATGAAAAGCTG                                   <  1:6491259/35‑1
GACATATTGCCCGTTGCAGTCAGAATGAAAAGCTG                                   <  1:4261549/35‑1
GACATATTGCCCGTTGCAGTCAGAATGAAAAGCTG                                   <  1:1963572/35‑1
GACATATTGCCCGTTGCAGTCAGAATGAAAAGCTG                                   <  1:11909924/35‑1
GACATATTGCCCGTTGCAGTCAGAATGAAAAGCTG                                   >  1:13385037/1‑35
 ACATATTGCCCGTTGCAGTCAGAATGAAAAGCTGA                                  >  1:471445/1‑35
 ACATATTGCCCGTTGCAGTCAGAATGAAAAGCTGA                                  <  1:18227986/35‑1
  CATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAA                                 >  1:989113/1‑35
  CATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAA                                 <  1:15567660/35‑1
   ATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAA                                >  1:7211853/1‑35
   ATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAA                                >  1:5833886/1‑35
   ATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAA                                <  1:20467417/35‑1
     ATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAAAA                              >  1:9580031/1‑35
     ATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAAAA                              >  1:14200957/1‑35
      TTGCCCGTTTCAGTCAGAATGAAAAGCTGAAAAAT                             >  1:8957497/1‑35
      TTGCCCGTTGCAGTCAGAATGAAAAGCTGAAAAct                             >  1:3830666/1‑33
      TTGCCCGTTGCAGTCAGAATGAAAAGCTGAAAAAT                             <  1:10408355/35‑1
      TTGCCCGTTGCAGTCAGAATGAAAAGCTGAAAAAT                             >  1:14318466/1‑35
       TGCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATA                            <  1:1757959/35‑1
        GCCCGTTGCAGTCAGAATGAAAAGCTGANNAATNN                           >  1:20258472/1‑35
        GCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATAC                           >  1:15904014/1‑35
        GCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATAC                           >  1:12121598/1‑35
        GCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATAC                           >  1:15072621/1‑35
        GCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATAC                           <  1:4290219/35‑1
        GCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATAC                           >  1:4901699/1‑35
        GCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATAC                           >  1:7763189/1‑35
        GCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATAC                           <  1:8322326/35‑1
         CCCGTTGCAGTCAGAATGAAAAGCTGAAAAATACT                          <  1:1839053/35‑1
         CCCGTTGCAGTCAGAATGAAAAGCTGAAAAATACT                          >  1:910186/1‑35
         CCCGTTGCAGTCAGAATGAAAAGCTGAAAAATACT                          <  1:10253143/35‑1
         CCCGTTGCAGTCAGAATGAAAAGCTGAAAAATACT                          >  1:12633690/1‑35
          CCGTTGCAGTCAGAATGAAAAGCTGAAAAATACTT                         <  1:19716525/35‑1
           CGTTGCAGTCAGAATGAAAAGCTGAAAAATACTTA                        >  1:2938087/1‑35
           CGTTGCAGTCAGAATGAAAAGCTGAAAAATACTTA                        >  1:1464278/1‑35
           CGTTGCAGTCAGAATGAAAAGCTGAAAAATACTTA                        <  1:5874184/35‑1
           CGTTGCAGTCAGAATGAAAAGCTGAAAAATACTTA                        >  1:179734/1‑35
           CGTTGCAGTCAGAATGAAAAGCTGAAAAATACTTA                        <  1:13362912/35‑1
            GTTGCAGTCAGAATGAAAAGCTGAAAAATACTTAC                       >  1:20463859/1‑35
             TTGCAGTCAGAATGAAAAGCTGAAAAATACTTACT                      <  1:20248857/35‑1
              TGCAGTCAGAATGAAAAGCTGAAAAATACTTACTA                     <  1:10690759/35‑1
              TGCAGTCAGAATGAAAAGCTGAAAAATACTTACTA                     <  1:20013663/35‑1
               GCAGTCAGAATGAAAAGCTGAAAAATACTTACTAA                    >  1:7874839/1‑35
               GCAGTCAGAATGAAAAGCTGAAAAATACTTACTAA                    >  1:12823694/1‑35
                CAGTCAGAATGAAAAGCTGAAAAATACTTACTAAG                   <  1:5273002/35‑1
                CAGTCAGAATGAAAAGCTGAAAAATACTTACTAAG                   >  1:20179481/1‑35
                CAGTCAGAATGAAAAGCTGAAAAATACTTACTAAG                   >  1:5315748/1‑35
                CAGTCAGAATGAAAAGCTGAAAAATACTTACTAAG                   >  1:9682316/1‑35
                CAGTCAGAATGAAAAGCTGAAAAATACTTACTAAG                   <  1:16227911/35‑1
                CAGTCAGAATGAAAAGCTGAAAAATACTTACTAAG                   >  1:3616282/1‑35
                 AGTCAGAATGAAAAGCTGAAAAATACTTACTAAGG                  <  1:13853584/35‑1
                 AGTCAGAATGAAAAGCTGAAAAATACTTACTAAGG                  >  1:13759871/1‑35
                 AGTCAGAATGAAAAGCTGAAAAATACTTACTAAGG                  <  1:15763985/35‑1
                 AGTCAGAATGAAAAGCTGAAAAATACTTACTAAGG                  <  1:4601836/35‑1
                  GTCAGAATGAAAAGCTGAAAAATACTTACTAAGGC                 <  1:17190333/35‑1
                   TCAGAATGAAAAGCTGAAAAATACTTACTAAGGCG                <  1:7357259/35‑1
                   TCAGAATGAAAAGCTGAAAAATACTTACTAAGGCG                >  1:12777178/1‑35
                   TCAGAATGAAAAGCTGAAAAATACTTACTAAGGCG                >  1:19551784/1‑35
                    CAGAATGAAAAGCTGAAAAATGCTTACTAAGGCGT               <  1:19762767/35‑1
                    CAGAATGAAAAGCTGAAAAATACTTACTAAGGCGT               <  1:3021842/35‑1
                    CAGAATGAAAAGCTGAAAAATACTTACTAAGGCGT               >  1:3314504/1‑35
                    CAGAATGAAAAGCTGAAAAATACTTACTAAGGCGT               >  1:16883227/1‑35
                    CAGAATGAAAAGCTGAAAAATACTTACTAAGGCGT               >  1:1318703/1‑35
                    CAGAATGAAAAGCTGAAAAATACTTACTAAGGCGT               >  1:14703614/1‑35
                     AGAATGAAAAGCTGAAAAATACTTACTAAGGCGTT              >  1:17690743/1‑35
                     AGAATGAAAAGCTGAAAAATACTTACTAAGGCGTT              >  1:15645208/1‑35
                     AGAATGAAAAGCTGAAAAATACTTACTAAGGCGTT              >  1:18771194/1‑35
                     AGAATGAAAAGCTGAAAAATACTTACTAAGGCGTT              <  1:6441600/35‑1
                     AGAATGAAAAGCTGAAAAATACTTACTAAGGCGTT              >  1:11379169/1‑35
                     AGAATGAAAAGCTGAAAAATACTTACTAAGGCGTT              <  1:10868547/35‑1
                      GAATGAAAAGCTGAAAAATACTTACTAAGGCGTTT             <  1:16409069/35‑1
                      GAATGAAAAGCTGAAAAATACTTACTAAGGCGTTT             >  1:7121790/1‑35
                      GAATGAAAAGCTGAAAAATACTTACTAAGGCGTTT             <  1:8836985/35‑1
                       AATGAAAAGCTGAAAAATACTTACTAAGGCGTTTT            >  1:8429812/1‑35
                       AATGAAAAGCTGAAAAATACTTACTAAGGCGTTTT            >  1:7641035/1‑35
                       AATGAAAAGCTGAAAAATACTTACTAAGGCGTTTT            <  1:13837302/35‑1
                        ATGAAAAGCTGAAAAATACTTACTAAGGCGTTTTT           <  1:3774898/35‑1
                        ATGAAAAGCTGAAAAATACTTACTAAGGCGTTTTT           >  1:17017762/1‑35
                         TGAAGAGCTGAAAAATACTTACTAAGGCGTTTTTT          <  1:9023592/35‑1
                         TGAAAAGCTGAAAAATACTTACTAAGGCGTTTTTT          <  1:8199084/35‑1
                         TGAAAAGCTGAAAAATACTTACTAAGGCGTTTTTT          >  1:6412619/1‑35
                         TGAAAAGCTGAAAAATACTTACTAAGGCGTTTTTT          <  1:6198436/35‑1
                          GAAAAGCTGAAAAATACTTACTAAGGCGTTTTTTA         >  1:11216469/1‑35
                          GAAAAGCTGAAAAATACTTACTAAGGCGTTTTTTA         >  1:5545615/1‑35
                          GAAAAGCTGAAAAATACTTACTAAGGCGTTTTTTA         <  1:5238662/35‑1
                           AAAAGCTGAAAAATACTTACTAAGGCGTTTTTTAT        >  1:1689522/1‑35
                           AAAAGCTGAAAAATACTTACTAAGGCGTTTTTTAT        <  1:13495121/35‑1
                           AAAAGCTGAAAAATACTTACTAAGGCGTTTTTTAT        >  1:16071356/1‑35
                           AAAAGCTGAAAAATACTTACTAAGGCGTTTTTTAT        >  1:8060942/1‑35
                           AAAAGCTGAAAAATACTTACTAAGGCGTTTTTTAT        >  1:13977483/1‑35
                           AAAAGCTGAAAAATACTTACTAAGGCGTTTTTTAT        >  1:15417366/1‑35
                            AAAGCTGAAAAATACTTACTAAGGCGTTTTTTATT       >  1:3637612/1‑35
                            AAAGCTGAAAAATACTTACTAAGGCGTTTTTTATT       <  1:5174962/35‑1
                             AAGCTGAAAAATACTTACTAAGGCGTTTTTTATTT      >  1:5663260/1‑35
                               GCTGAAAAATACTTACTAAGGCGTTTTTTATTTGG    >  1:7785479/1‑35
                                CTGAAAAATACTTACTAAGGCGTTTTTTATTTGGT   >  1:20391163/1‑35
                                CTGAAAAATACTTACTAAGGCGTTTTTTATTTGGT   >  1:2836537/1‑35
                                 TGAAAAATACTTACTAAGGCGTTTTTTATTTGGTG  <  1:1159136/35‑1
                                 TGAAAAATACTTACTAAGGCGTTTTTTATTTGGTG  >  1:15087608/1‑35
                                                                    
GACATATTGCCCGTTGCAGTCAGAATGAAAAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/34‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAAAATACTTACTAAGGCGTTTTTTATTTGGTG  <  REL606/4629812‑4629779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.