New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2234598 = | 88 (0.860) | 15 (0.180) | 5/38 | NT | 16.6% | coding (538/1008 nt) | yejK | nucleoid‑associated protein NdpA |
? | REL606 | 3944634 = | 81 (1.000) | intergenic (+23/‑124) | proM/aslB | tRNA‑Pro/predicted regulator of arylsulfatase activity |
TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2234636‑2234598 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGGTTTTTTGTTT > REL606/3944634‑3944645 TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTG > 1:14742999/1‑35 TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTG < 1:18315068/35‑1 TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTG > 1:19342477/1‑35 TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTG < 1:12073938/35‑1 TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTG > 1:10518629/1‑35 TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTG < 1:9053194/35‑1 TCACTTTACTGAAAGGGCGAGTAGGGCGCAAAGTG < 1:8248174/35‑1 TCACTTTACTGAAAGGGCGAGTAGGGCGCAAAGTG < 1:7174196/35‑1 CACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGG > 1:7538004/1‑35 CACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGG < 1:4936455/35‑1 ACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGC > 1:11938099/1‑35 ACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGC < 1:10683216/35‑1 ACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGC < 1:827453/35‑1 ACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGC < 1:12367314/35‑1 CTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCG < 1:15216679/35‑1 CTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCG < 1:14908842/35‑1 TTTCCTGAAAGGGCTAGTAGGGCGCAAAGTGGCGG > 1:17472575/1‑35 TTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG < 1:321892/35‑1 TTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG < 1:18776668/35‑1 TTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG > 1:8165639/1‑35 TTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG > 1:12146311/1‑35 TTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG < 1:16867054/35‑1 TTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG > 1:12549945/1‑35 TTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGG > 1:7706729/1‑35 TCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGG > 1:7259333/1‑35 CCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGT > 1:19455386/1‑35 CCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGT > 1:15854494/1‑35 CCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGT > 1:6154315/1‑35 CTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTT > 1:12536738/1‑35 CTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTT > 1:11286206/1‑35 CTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTT > 1:14425833/1‑35 CTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTT > 1:13995456/1‑35 TGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGTTTT > 1:8163370/1‑35 TGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGTTTT > 1:9010996/1‑35 TGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGTTTT > 1:2632456/1‑35 TGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTc > 1:8605643/1‑34 TGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTT > 1:871945/1‑35 GAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTct > 1:12339635/1‑33 GAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTTT > 1:10418954/1‑35 AAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTCTT > 1:18578463/1‑35 AAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTCTT > 1:11346253/1‑35 AAGGGCGAGTAGGGCGCAAAGTGGCGGGTTTTTTT > 1:13411492/1‑35 AAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTTTTT > 1:4739356/1‑35 AGGGCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTt > 1:18394381/1‑34 AGGGCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTt > 1:14645543/1‑34 AGGGCGAGTAGGGCGCAAAGTGGCGGGGTTCTTTt > 1:18114667/1‑34 AGGGCGAGTAGGGCGCAAAGTGGCGGGGTTCTTTt > 1:2322133/1‑34 GGGCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTtt > 1:13716782/1‑33 GGGCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTat > 1:13727478/1‑33 GGCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTTTT > 1:8309281/1‑35 GCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTTTTg > 1:11226143/1‑34 GCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTTTTg > 1:10663182/1‑34 GCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTTTTT > 1:16498765/1‑35 TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2234636‑2234598 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGGTTTTTTGTTT > REL606/3944634‑3944645 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |