New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1036071 | 104 (1.010) | 13 (0.130) | 7/46 | NT | 13.9% | intergenic (+43/+33) | ycbG/ompA | hypothetical protein/outer membrane protein A (3a;II*;G;d) |
? | REL606 | 3487307 = | 61 (0.620) | coding (440/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
AGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1036037‑1036071 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGA > REL606/3487307‑3487340 AGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC > 1:4581651/1‑35 AGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC < 1:19956978/35‑1 AGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC < 1:16973270/35‑1 AGTAAGTTCAATTTACTAAAGGCAAAAAAAACCCC < 1:20563512/35‑1 caCAAAAAAAACCCCAGCCGCGCGGCGCAGGTGAA < 1:18923468/33‑1 GCAAAAAAAACCCCAGCCGCGCGGCGCAGGTGAAG < 1:8829321/35‑1 CAAAAAAACCCCCAGCCGCGCGGCGCAGGTGAAGT < 1:16884076/35‑1 CAAAAAAACCCCCAGCCGCGCGGCGCAGGTGAAGT < 1:6571056/35‑1 CAAAAAAAACCCCAGCCGCGCGGCGCAGGTGAAGT < 1:8264588/35‑1 CAAAAAAAACCCCAGCCGCGCGGCGCAGGTGAAGT < 1:18229389/35‑1 AAAAAAAACCCCAGCCGCGCGGCGCAGGTGAAGTG < 1:8983058/35‑1 AAAAAAAACCCCAGCCGCGCGGCGCAGGTGAAGTG < 1:4902896/35‑1 AAAAAAACCCCAGCCGCGCGGCGCAGGTGAAGTGA < 1:5319413/35‑1 AAAAACCCCCAGCCGCGCGGCGCAGGTGAAGTGAC < 1:8432807/35‑1 AAAAACCCCCAGCCGCGCGGCGCAGGTGAAGTGAC < 1:6483821/35‑1 AAAACCCCCAGCCGCGCGGCGCAGGTGAAGTGACG < 1:13035882/35‑1 AAACCCCAGCCGCGCGGCGCAGGTGAAGTGACGAT < 1:8622292/35‑1 ccCCCCAGCCGCGCGGCGCAGGTGAAGTGACGATT < 1:8599492/33‑1 acCCCCAGCCGCGCGGCGCAGGTGAAGTGACGATT < 1:9172949/33‑1 acCCCCAGCCGCGCGGCGCAGGTGAAGTGACGATT < 1:1599653/33‑1 cCCCCAGCCGCGCGGCGCAGGTGAAGTGACGATTA < 1:3616404/34‑1 CCCCAGCCGCGCGGCGCAGGTGAAGTGACGATTAT < 1:11496360/35‑1 CCCAGCCGCGCGGCGCAGGTGAAGTGACGATTATC < 1:2951344/35‑1 CCCAGCCGCGCGGCGCAGGTGAAGTGACGATTATC < 1:18316977/35‑1 CCCAGCCGCGCGGCGCAGGTGAAGTGACGATTATC < 1:15084078/35‑1 CCAGCCGCGCGGCGCAGGTGAAGTGACGATTATCG < 1:16706219/35‑1 CAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGA > 1:2755481/1‑35 CAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGA < 1:16967824/35‑1 CAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGA < 1:16636240/35‑1 CAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGA < 1:14111691/35‑1 CAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGA < 1:8751886/35‑1 CAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGA < 1:13962886/35‑1 CAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGA < 1:10888846/35‑1 AGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1036037‑1036071 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cAGCCGCGCGGCGCAGGTGAAGTGACGATTATCGA > REL606/3487307‑3487340 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |