New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2318764 =63 (0.610)11 (0.140) 4/36 NT 13.6% coding (1344/1653 nt) arnT 4‑amino‑4‑deoxy‑L‑arabinose transferase
?REL606 4219145 = 92 (1.190)intergenic (+483/‑112) yjbH/yjbA predicted porin/phosphate‑starvation‑inducible protein PsiE

TGCGGCAACACCGACGCTATCAGTAAGAATATAGCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2318803‑2318764
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcttTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAA  >  REL606/4219145‑4219178
                                                                          
TGCGGCAACACCGACGCTATCAGTAAGAATATAGC                                         >  1:18293166/1‑35
TGCGGCAACACCGACGCTATCAGTAAGAATATAGC                                         >  1:12026773/1‑35
TGCGGCAACACCGACGCTATCAGTAAGAATATAGC                                         >  1:15345111/1‑35
TGCGGCAACACCGACGCTATCAGTAAGAATATAGC                                         >  1:15074440/1‑35
 GCGGCAACACCGACGCTATCAGTAAGAATATAGCt                                        >  1:17424947/1‑34
   GGCAACACCGACGCTATCAGTAAGAATATAGCGGC                                      >  1:1561127/1‑35
   GGCAACACCGACGCTATCAGTAAGAATATAGCGGC                                      >  1:18342404/1‑35
   GGCAACACCGACGCTATCAGTAAGAATATAGCGGC                                      >  1:12086561/1‑35
   GGCAACACCGACGCTATCAGTAAGAATATAGCGGC                                      >  1:2114068/1‑35
   GGCAACACCGACGCTATCAGTAAGAATATAGCGGC                                      >  1:12718920/1‑35
    GCAACACCGACGCTATCAGTAAGAATATAGCTGCT                                     >  1:19901269/1‑35
    GCAACACCGACGCTATCAGTAAGAATATAGCGGgt                                     >  1:1166772/1‑33
    GCAACACCGACGCTATCAGTAAGAATATAGCGGCT                                     >  1:20308698/1‑35
     CAACACCGACGCTATCAGTAAGAATATAGCGGCTT                                    >  1:2408775/1‑35
     CAACACCGACGCTATCAGTAAGAATATAGCGGCTT                                    >  1:19708730/1‑35
     CAACACCGACGCTATCAGTAAGAATATAGCGGCTT                                    >  1:5983052/1‑35
      AACACCGACGCTATCAGTAAGAATATAGCGGCTTT                                   >  1:19428656/1‑35
      AACACCGACGCTATCAGTAAGAATATAGCGGCTTT                                   >  1:5433924/1‑35
       ACAGCGACGCTATCAGTAAGAATATAGCGGCTTTt                                  >  1:17412991/1‑34
       ACACCGACGCTATCAGTAAGAATATAGCGGCTTTG                                  >  1:12354676/1‑35
       ACACCGACGCTATCAGTAAGAATATAGCGGCTTTG                                  >  1:12079732/1‑35
       ACACCGACGCTATCAGTAAGAATATAGCGGCTTTG                                  >  1:11751853/1‑35
       ACACCGACGCTATCAGTAAGAATATAGCGGCTTTG                                  >  1:6011958/1‑35
        CACCGACGCTATCAGTAAGAATATAGCGGCTTTGc                                 >  1:4012275/1‑34
        CACCGACGCTATCAGTAAGAATATAGCGGCTTTGc                                 >  1:17069270/1‑34
          CCGACGCTATCAGTAAGAATATAGCGGCTTTGGcg                               >  1:16386803/1‑33
          CCGACGCTATCAGTAAGAATATAGCGGCTTTGGTG                               >  1:13205036/1‑35
           CGACGCTATCAGTAAGAATATAGCGGGTTTGGTGG                              >  1:19546542/1‑35
            GACGCTATCAGTAAGAATATAGCGGCTTTGGTGGA                             >  1:7292516/1‑35
            GACGCTATCAGTAAGAATATAGCGGCTTTGGTGGA                             >  1:4154382/1‑35
            GACGCTATCAGTAAGAATATAGCGGCTTTGCTGGA                             >  1:11087364/1‑35
            GACGCTATCAGTAAGAATATAGCGGCTTTGCTGGA                             >  1:10624947/1‑35
             ACGCTATCAGTAAGAATATAGCGGCTTTGGTTGAG                            >  1:15591315/1‑35
             ACGCTATCAGTAAGAATATAGCGGCTTTGGTGGgg                            >  1:5330596/1‑33
              CGCTATCAGTAAGAATATAGCGGCTTTGGTGGAGG                           >  1:4439199/1‑35
                 TATCAGTAAGAATATAGCGGCTTTGGTGGAGGggt                        >  1:2762670/1‑32
                 TATCAGTAAGAATATAGCGGCTTTGGTGGAGGggt                        >  1:4245181/1‑32
                 TATCAGTAAGAATATAGCGGCTTTGGTGGAGGggt                        >  1:12463862/1‑32
                                  CGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTG       <  1:13522904/35‑1
                                   GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA      >  1:8155023/1‑35
                                   GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA      <  1:20158730/35‑1
                                   GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA      >  1:16431774/1‑35
                                   GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA      <  1:8894876/35‑1
                                   GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA      >  1:13189775/1‑35
                                   GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA      <  1:9350687/35‑1
                                   GGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA      <  1:9581157/35‑1
                                    GCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGca     >  1:17395955/1‑33
                                    GCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAA     >  1:19189763/1‑35
                                    GCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAA     >  1:12878662/1‑35
                                    GCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAA     >  1:951614/1‑35
                                     CTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAC    <  1:8679085/35‑1
                                     CTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAC    >  1:3182935/1‑35
                                     CTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAC    <  1:15381503/35‑1
                                     CTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAC    <  1:10494037/35‑1
                                      TTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACA   >  1:20406009/1‑35
                                      TTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACA   <  1:7367159/35‑1
                                      TTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACA   >  1:18797539/1‑35
                                      TTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACA   <  1:12931075/35‑1
                                      TTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACA   <  1:9891494/35‑1
                                       TTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAA  <  1:5924186/35‑1
                                       TTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAA  <  1:20340048/35‑1
                                       TTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAA  <  1:12039900/35‑1
                                                                          
TGCGGCAACACCGACGCTATCAGTAAGAATATAGCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2318803‑2318764
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcttTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAA  >  REL606/4219145‑4219178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.