New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2749601109 (1.060)21 (0.230) 6/42 NT 19.0% coding (404/2079 nt) fhlA DNA‑binding transcriptional activator
?REL606 4351442 = 84 (0.930)intergenic (+50/‑88) groEL/yjeI chaperonin GroEL/hypothetical protein

GCCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2749566‑2749601
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGGGGTTTTTCTTTT  >  REL606/4351442‑4351455
                                                  
GCCACTGGCGGCGGAAGGGCATATTTTTGGTGGCT                 <  1:16900335/35‑1
 CCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG                <  1:6692878/35‑1
 CCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG                <  1:12349933/35‑1
 CCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG                <  1:571821/35‑1
 CCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG                <  1:15666974/35‑1
 CCACTGGCGGCGGAAGGGCATATTTTTGCTGGCTa                <  1:486823/35‑2
    CTGGCGGCGGAAGGGCATATTTTTGGTGGCTGGGG             >  1:14204639/1‑35
      GGCGGCGGAAGGGCATATTTTTGGTGGCTGGGGGg           >  1:12195956/1‑34
      GGCGGCGGAAGGGCATATTTTTGGTGGCTGGGGGg           >  1:16711175/1‑34
        CGGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTT         >  1:6121710/1‑35
        CGGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTT         >  1:13421852/1‑35
        CGGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTT         >  1:19740305/1‑35
        CGGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTT         >  1:19443172/1‑35
        CGGCGGAAGGGCATATTTTTGGTGGCTGGGGGATT         >  1:12194571/1‑35
         GGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTTT        >  1:9153661/1‑35
         GGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTTT        >  1:7550784/1‑35
         GGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTTT        >  1:14316633/1‑35
         GGCGGAAGGGCATATTTTTGGTGGCTGGGGGGTTT        >  1:6150378/1‑35
         GGCGGAAGGGCATATTTTTGGTGGCTGGGGGATTT        >  1:7299187/1‑35
         GGCGGAAGGGCATATTTTTGGTGGCTGGGGATTTT        >  1:1315891/1‑35
          GCGGAAGGGCATATTTTTGGTGGCTGGGGGTTTTT       >  1:18550005/1‑35
          GCGGAAGGGCATATTTTTGGTGGCTGGGGGGTTTT       >  1:14240486/1‑35
          GCGGAAGGGCATATTTTTGGTGGCTGGGGGATTTT       >  1:260701/1‑35
           CGGAAGGGCATATTTTTGGTGGCTGGGGGTTTTTt      >  1:4112033/1‑34
           CGGAAGGGCATATTTTTGGTGGCTGGGGGTGTTTt      >  1:926906/1‑34
           CGGAAGGGCATATTTTTGGTGGCTGGGGGGTTTTt      >  1:1766910/1‑34
            GGAAGGGCATATTTTTGGTGGCTGGGGGTTTTTtt     >  1:1805405/1‑33
             GAAGGGCATATTTTTGGTGGCTGGGGGTTTTTTTT    >  1:17528116/1‑35
              AAGGGCATATTTTTGGTGGCTGGGGGTTTTTTTTT   >  1:2435610/1‑35
               AGGGCATATTTTTGGTGGCTGGGGGTTTTTTTTTT  >  1:764069/1‑35
                                                  
GCCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2749566‑2749601
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGGGGTTTTTCTTTT  >  REL606/4351442‑4351455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.