New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1398219108 (1.050)6 (0.090) 3/32 NT 8.5% coding (725/1527 nt) abgT predicted cryptic aminobenzoyl‑glutamate transporter
?REL606 = 1743481 58 (0.850)coding (2472/3057 nt) ydiJ predicted FAD‑linked oxidoreductase

Only 100 of 171 total aligned reads displayed.

AGCCTTTGATATGCTGGGCTTTGCCATTTGGTGAAAATGGCAGTAACACAGGCTGGAAACCTAATTTTT  >  REL606/1743447‑1743515
                                  |                                  
aGCCTTTGATATGCTGGGCTTTGCCATTTGGTGaa                                    <  1:9088567/35‑1 (MQ=255)
 tcttttgatATGCTGGGCTTTGCCATTTGGTGAAa                                   >  1:5709652‑M2/4‑34 (MQ=255)
 gCCTTTGATATGCTGGGCTTTGCCATTTGGTGAAa                                   >  1:9653931‑M2/1‑34 (MQ=255)
 gCCTTTGATATGCTGGGCTTTGCCATTTGGTGAAa                                   >  1:17142996‑M2/1‑34 (MQ=255)
 gCCTTTGATATGCTGGGCTTTGCCATTTGGTGAAa                                   >  1:16356404‑M2/1‑34 (MQ=255)
 gCCTTTGATATGCTGGGCTTTGCCATTTGGTGAAa                                   <  1:3059685‑M2/35‑2 (MQ=255)
 gCCTTTGATATGCTGGGCTTTGCCATTTGGTGAAa                                   <  1:3515313‑M2/35‑2 (MQ=255)
  ccTTTGATATGCTGGGCTTTGCCATTTGGTGAAaa                                  <  1:8191266‑M2/35‑3 (MQ=255)
  ccTTTGATATGCTGGGCTTTGCCATTTGGTGAAaa                                  <  1:17761999‑M2/35‑3 (MQ=255)
  ccTTTGATATGCTGGGCTTTGCCATTTGGTGAAaa                                  >  1:14922342‑M2/1‑33 (MQ=255)
  ccTTTGATATGCTGGGCTTTGCCATTTGGTGAAaa                                  >  1:20611052‑M2/1‑33 (MQ=255)
   cTTTGATATGCTGGGCTTTGCCATTTGGTGAAaat                                 >  1:13920991‑M2/1‑32 (MQ=255)
    tttGATATGCTGGGCTTTGCCATTTGGTGAAaatg                                >  1:10631489‑M2/1‑31 (MQ=255)
    tttGATATGCTGGGCTTTGCCATTTGGTGAAaatg                                >  1:16741303‑M2/1‑31 (MQ=255)
    tttGATATGCTGGGCTTTGCCATTTGGTGAAaatg                                >  1:5321620‑M2/1‑31 (MQ=255)
     ttGATATGCTGGGCTTTGCCATTTGGTGAAaatgg                               >  1:6459844‑M2/1‑30 (MQ=255)
     ttGATATGCTGGGCTTTGCCATTTGGTGAAaatgg                               <  1:19485022‑M2/35‑6 (MQ=255)
     ttGATATGCTGGGCTTTGCCATTTGGTGAAaatgg                               <  1:4614340‑M2/35‑6 (MQ=255)
      tGATATGCTGGGCTTTGCCATTTGGTGAAaatggc                              <  1:8597862‑M2/35‑7 (MQ=255)
      tGATATGCTGGGCTTTGCCATTTGGTGAAaatggc                              >  1:17965527‑M2/1‑29 (MQ=255)
      tGATATGCTGGGCTTTGCCATTTGGTGAAaatggc                              >  1:20007338‑M2/1‑29 (MQ=255)
      tGATATGCTGGGCTTTGCCATTTGGTGAAaatggc                              >  1:20582678‑M2/1‑29 (MQ=255)
      tGATATGCTGGGCTTTGCCATTTGGTGAAaatggc                              <  1:4071585‑M2/35‑7 (MQ=255)
      tGATATGCTGGGCTTTGCCATTTGGTGAAaatggc                              >  1:3130224‑M2/1‑29 (MQ=255)
       gATATGCTGGGCTTTGCCATTTGGTGAAaatggca                             <  1:15324365‑M2/35‑8 (MQ=255)
        atatGCTGGGCTTTGCCATTTGGTGAAaatggcag                            >  1:3759504‑M2/1‑27 (MQ=255)
        atatGCTGGGCTTTGCCATTTGGTGAAaatggcag                            <  1:10656369‑M2/35‑9 (MQ=255)
        atatGCTGGGCTTTGCCATTTGGTGAAaatggcag                            >  1:9362822‑M2/1‑27 (MQ=255)
        atatGCTGGGCTTTGCCATTTGGTGAAaatggcag                            <  1:1174732‑M2/35‑9 (MQ=255)
        atatGCTGGGCTTTGCCATTTGGTGAAaatggcag                            >  1:7365372‑M2/1‑27 (MQ=255)
        atatGCTGGGCTTTGCCATTTGGTGAAaatggcag                            >  1:14653790‑M2/1‑27 (MQ=255)
         tatGCTGGGCTTTGCCATTTGGTTAAaatggcagg                           <  1:4713196‑M2/35‑10 (MQ=255)
         tatGCTGGGCTTTGCCATTTGGTGAAaatggcagg                           <  1:1985019‑M2/35‑10 (MQ=255)
         tatGCTGGGCTTTGCCATTTGGTGAAaatggcagg                           <  1:1309857‑M2/35‑10 (MQ=255)
         tatGCTGGGCTTTGCCATTTGGTGAAAATGGCAGt                           <  1:16475808/35‑1 (MQ=255)
         tatGCTGGGCTTTGCCATTTGGTGAAAATGGCAGt                           <  1:4376778/35‑1 (MQ=255)
         tatGCTGGGCTTTGCCATTTGGTGAAAATGGCAGt                           <  1:20298189/35‑1 (MQ=255)
          atGCTGGGCTTTGCCATTTGGTGAAaatggcaggg                          <  1:19921442‑M2/35‑11 (MQ=255)
          atGCTGGGCTTTGCCATTTGGTGAAaatggcaggg                          <  1:11403994‑M2/35‑11 (MQ=255)
          atGCTGGGCTTTGCCATTTGGTGAAaatggcaggg                          <  1:14657683‑M2/35‑11 (MQ=255)
          atGCTGGGCTTTGCCATTTGGTGAAaatggcaggg                          <  1:11001725‑M2/35‑11 (MQ=255)
          atGCTGGGCTTTGCCATTTGGTGAAaatggcaggg                          <  1:9912629‑M2/35‑11 (MQ=255)
          atGCTGGGCTTTGCCATTTGGTGAAAATGGCAGTn                          <  1:16880418/35‑1 (MQ=255)
          atGCTGGGCTTTGCCATTTGGTGAAAATGGCAGTa                          <  1:9290488/35‑1 (MQ=255)
           tcttGGGCTTTGCCATTTGGTGAAAATGGCAGTaa                         <  1:6919548/32‑1 (MQ=255)
           tGCTGGGCTTTGCCATTTGGTGAAaatggcaggga                         <  1:15912276‑M2/35‑12 (MQ=255)
           tGCTGGGCTTTGCCATTTGGTGAAAATGGCAGTaa                         <  1:11924920/35‑1 (MQ=255)
           tGCTGGGCTTTGCCATTTGGTGAAAATGGCAGTaa                         <  1:11382389/35‑1 (MQ=255)
           tGCTGGGCTTTGCCATTTGGTGAAAATGGCAGTaa                         <  1:5809228/35‑1 (MQ=255)
            gCTGGGCTTTGCCATTTGGTGAAaatggcagggac                        <  1:4821420‑M2/35‑13 (MQ=255)
            gCTGGGCTTTGCCATTTGGTGAAAATTGCAGTAac                        >  1:10406882/1‑35 (MQ=255)
            gCTGGGCTTTGCCATTTGGTGAAAATGGGAGTAac                        <  1:14043376/35‑1 (MQ=255)
            gCTGGGCTTTGCCATTTGGTGAAAATGGCAGTAac                        <  1:5308302/35‑1 (MQ=255)
             cTGGGCTTTGCCATTTGGTGAAaatggcagggaga                       <  1:18257719‑M2/35‑14 (MQ=255)
             cTGGGCTTTGCCATTTGGTGAAAATGGCAGTAaca                       <  1:18796588/35‑1 (MQ=255)
             cTGGGCTTTGCCATTTGGTGAAAATGGCAGTAaca                       <  1:8509215/35‑1 (MQ=255)
              tGGGCTTTGCCATTTGGTGAAaatggcagggagaa                      <  1:20361927‑M2/35‑15 (MQ=255)
              tGGGCTTTGCCATTTGGTGAAaatggcagggacac                      <  1:2397302‑M2/35‑15 (MQ=255)
              tGGGCTTTGCCATTTGGTGAAaatggcagggaaac                      <  1:4836768‑M2/35‑15 (MQ=255)
              tGGGCTTTGCCATTTGGTGAAAATGGCAGTAacac                      <  1:5325776/35‑1 (MQ=255)
              tGGGCTTTGCCATTTGGTGAAAATGGCAGTAacac                      <  1:11880932/35‑1 (MQ=255)
               gggCTTTGCCATTTGGTGAAAATGGCAGTAAcaca                     <  1:2981735/35‑1 (MQ=255)
               gggCTTTGCCATTTGGTGAAAATGGCAGTAAcaca                     <  1:706215/35‑1 (MQ=255)
               gggCTTTGCCATTTGGTGAAAATGGCAGTAAcaca                     <  1:12703458/35‑1 (MQ=255)
                ggCTTTGCCATTTGGTGAAaatggcagggaaacag                    <  1:6355704‑M2/35‑17 (MQ=255)
                ggCTTTGCCATTTGGTGAAAATTGCAGTAACACAg                    >  1:15619715/1‑35 (MQ=255)
                 gCTTTGCCATTTGGTGAAaatggcagggacacagg                   <  1:12280788‑M2/35‑18 (MQ=255)
                 gCTTTGCCATTTGGTGAAAATGGCAGTAACACAgg                   <  1:19572045/35‑1 (MQ=255)
                 gCTTTGCCATTTGGTGAAAATGGCAGTAACACAgg                   <  1:18661240/35‑1 (MQ=255)
                 gCTTTGCCATTTGGTGAAAATGGCAGGGAcacaag                   >  1:11467329/1‑33 (MQ=25)
                  cTTTGCCATTTGGTGAAAATGGCAGTAACACAGGc                  <  1:2546164/35‑1 (MQ=255)
                  cTTTGCCATTTGGTGAAAATGGCAGGGGCACAGGc                  >  1:4972100/1‑35 (MQ=25)
                  cTTTGCCATTTGGTGAAAATGGCAGGGACACAAGc                  >  1:13571566/1‑35 (MQ=25)
                   tttGCCATTTGGTGAAAATGGCAGTAACACAGGCt                 <  1:9000226/35‑1 (MQ=255)
                   tttGCCATTTGGTGAAAATGGCAGGGACACAGGcg                 >  1:4660411/1‑34 (MQ=37)
                   tttGCCATTTGGTGAAAATGGCAGGGACAAAgggg                 >  1:7982207/1‑33 (MQ=21)
                    ttGCCATTTGGTGAAAATGGCAGTAACACAGGCTg                <  1:7836224/35‑1 (MQ=255)
                     tGCCATTTGGTGAAAATGGCAGGGACACAGGGTgg               >  1:13716758/1‑35 (MQ=25)
                     tGCCATTTGGTGAAAATGGCAGGGACACAGGCTgg               >  1:15148795/1‑35 (MQ=37)
                      gCCATTTGGTGAAAATGGCAGTAACACAGGCTGGa              <  1:15927559/35‑1 (MQ=255)
                       ccATTTGGTGAAAATGGCAGGGACACACGGTgggg             >  1:10087590/1‑33 (MQ=16)
                        cATTTGGTGAAAATGGCAGTAACACAGGCTGGaaa            <  1:5727368/35‑1 (MQ=255)
                         aTTTGGTGAAAATGGCAGTAACACAGGCTGGAAAc           <  1:6705473/35‑1 (MQ=255)
                         aTTTGGTGAAAATGGCAGTAACACAGGCTGGAAAc           <  1:1277866/35‑1 (MQ=255)
                          tttGGTGAAAATGGCAGTAACACAGGCTGGAAAcc          <  1:9941429/35‑1 (MQ=255)
                          tttGGTGAAAATGGCAGTAACACAGGCTGGAAAcc          <  1:9546947/35‑1 (MQ=255)
                          tttGGTGAAAATGGCAGTAACACAGGCTGGAAAcc          <  1:19627404/35‑1 (MQ=255)
                          tttGGTGAAAATGGCAGTAACACAGGCTGGAAAcc          <  1:17428623/35‑1 (MQ=255)
                          tttGGTGAAAATGGCAGTAACAAAGGCTGGAAAcc          <  1:5569115/35‑1 (MQ=255)
                            tGGTTAAAATGGCAGTAACACAGGCTGGAAACCTa        <  1:15430979/35‑1 (MQ=255)
                            tGGTGAAAATGGCAGTAACACAGGCTGGAAACCTa        <  1:258855/35‑1 (MQ=255)
                            tGGTGAAAATGGCAGTAACACAGGCTGGAAACCTa        <  1:15727307/35‑1 (MQ=255)
                            tGGTGAAAATGGCAGTAACACAGGCTAGAAACCTa        <  1:16980690/35‑1 (MQ=255)
                             ggTGAAAATGGCAGTAACACAGGCTGGAAACCTaa       <  1:15160/35‑1 (MQ=255)
                              gTGAAAATGGCAGTAACACAGGCTGGAAACCTAAt      <  1:17309816/35‑1 (MQ=255)
                               tGAAAATTGCAGTAACACAGGCTGGGAACCTAAtt     >  1:7158787/1‑35 (MQ=38)
                                gAAAATGGCAGTAACACAGGCTGGAAACCTAAttt    <  1:10533893/35‑1 (MQ=255)
                                 aaaaTGGCAGTAACACAGGCTGGAAACCTAAtttt   <  1:8284436/35‑1 (MQ=255)
                                  aaaTGGCAGTAACACAGGCTGGAAACCTAAttttt  <  1:19952323/35‑1 (MQ=255)
                                  aaaTGGCAGTAACACAGGCTGGAAACCTAAttttt  <  1:619988/35‑1 (MQ=255)
                                  |                                  
AGCCTTTGATATGCTGGGCTTTGCCATTTGGTGAAAATGGCAGTAACACAGGCTGGAAACCTAATTTTT  >  REL606/1743447‑1743515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.