New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2682742 = | NA (NA) | 39 (0.540) | 6/34 | NT | 45.9% | noncoding (135/768 nt) | IS1 | repeat region |
? | REL606 | 2703961 = | 65 (0.630) | coding (794/1185 nt) | ygaX | predicted transporter |
GGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCC > REL606/2682708‑2682768 | ggggTGGTGCGTAACGGCAAAAGCACTGCCGGACa > 1:9906509/1‑35 (MQ=38) ggggTGGTGCGTAACGGCAAAAGCACTGCCGGACa > 1:8904889/1‑35 (MQ=38) ggggTGGTGCGTAACGGCAAAAGCACTGCCGGACa > 1:7027549/1‑35 (MQ=38) ggggTGGTGCGTAACGGCAAAAGCACTGCCGGACa > 1:20418957/1‑35 (MQ=38) ggggTGGTGCGTAACGGCAAAAGCACTGCCGGACa > 1:19145078/1‑35 (MQ=38) ggggTGGTGCGTAACGGCAAAAGCACTGCCGGACa > 1:15253820/1‑35 (MQ=38) gggTGGTGCGTAACTGCAAAAGCACTGCCGGACAt > 1:14773584/1‑35 (MQ=255) gggTGGTGCGTAACGGCAAAAGCACTGCCGGACAt < 1:12265129/35‑1 (MQ=35) gggTGGTGCGTAACGGCAAAAGCACTGCCGGACAt > 1:7523416/1‑35 (MQ=35) ggtggtGCGTAACGGCAAAAGCACTGCCGGACATc > 1:1517198/1‑35 (MQ=32) ggtggtGCGTAACGGCAAAAGCACTGCCGGACATc < 1:16922110/35‑1 (MQ=32) ggtggtGCGTAACGGCAAAAGCACTGCCGGACATc > 1:172464/1‑35 (MQ=32) ggtggtGCGTAACGGCAAAAGCACTGCCGGACATc < 1:14359252/35‑1 (MQ=32) ggtggtGCGTAACGGCAAAAGCACTGCCGGACATc > 1:15406614/1‑35 (MQ=32) gCACTGCCGGACATCAGCGCTATCTCTGCTCTCAc < 1:9543172/35‑1 (MQ=32) gCACTGCCGGACATCAGCGCTATCTCTGCTCTCAc < 1:17871306/35‑1 (MQ=32) cACTGCCGGACATCAGCGCTATCTCTGCTCTCACt < 1:15317824/35‑1 (MQ=35) cACTGCCGGACATCAGCGCTATCTCTGCTCTCACt > 1:377366/1‑35 (MQ=35) cACTGCCGGACATCAGCGCTATCTCTGCTCTCACt > 1:15753496/1‑35 (MQ=35) cACTGCCGCACATCAGCGCTATCTCTGCTCTCACt > 1:389733/1‑35 (MQ=255) tcTGCCGGACATCAGCGCTATCTCTGCTCTCACTg < 1:2787763/34‑1 (MQ=25) aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg < 1:1940680/35‑1 (MQ=38) aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg < 1:19501891/35‑1 (MQ=38) aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg < 1:15147773/35‑1 (MQ=38) aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg < 1:18028189/35‑1 (MQ=38) aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg > 1:4731143/1‑35 (MQ=38) aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg > 1:4783509/1‑35 (MQ=38) aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg < 1:5827405/35‑1 (MQ=38) aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg < 1:16553237/35‑1 (MQ=38) aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg < 1:13359130/35‑1 (MQ=38) cTGCCGGACATCAGCGCTATCTCTGCTCTCACTGc < 1:15609663/35‑1 (MQ=35) cTGCCGGACATCAGCGCTATCTCTGCTCTCACTGc < 1:8319916/35‑1 (MQ=35) tGCCGGACATCAGCGCTATCTCTGCTCTCCCTGcc < 1:7724002/35‑1 (MQ=12) tGCCGGACATCAGCGCTATCTCTGCTCTCACTGcc > 1:17841925/1‑35 (MQ=32) tGCCGGACATCAGCGCTATCTCTGCTCTCACTGcc < 1:4825440/35‑1 (MQ=32) | GGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCC > REL606/2682708‑2682768 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |