New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 294203 =75 (0.730)12 (0.160) 3/36 NT 18.3% intergenic (+473/‑54) ykgD/ykgE predicted DNA‑binding transcriptional regulator/predicted oxidoreductase
?REL606 836230 = 51 (0.660)coding (1876/2226 nt) ybiO predicted mechanosensitive channel

Only 100 of 143 total aligned reads displayed.

TCATGGCGATCAACATCATAATTTGCCACCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTT  >  REL606/836196‑836264
                                  |                                  
 cATGGCGATCAACATCATAATTTGCCACCACCGaa                                   >  1:16816376/1‑35 (MQ=255)
 cATGGCGATCAACATCATAATTTGCCACCACCGaa                                   >  1:7424902/1‑35 (MQ=255)
  aTGGCGATCAACATCATAATTTGCCACCACCGAAc                                  <  1:10972570/35‑1 (MQ=255)
  aTGGCGATCAACATCATAATTTGCCACCAACGAAc                                  <  1:12829275/35‑1 (MQ=255)
   tGGCGATCAACATCATAATTTGCCACCACCGAAcc                                 >  1:1253423/1‑35 (MQ=255)
    ggCGATCAACATCATAATTTGCCACCACCGAACCa                                >  1:11389440/1‑35 (MQ=255)
    ggCGATCAACATCATAATTTGCCACCACCGAACCa                                >  1:19341390/1‑35 (MQ=255)
     gCGATCAACATCATAATTTGCCACCACCGAACCaa                               >  1:580162/1‑35 (MQ=255)
     gCGATCAACATCATAATTTGCCACCACCGAACCaa                               >  1:20023969/1‑35 (MQ=255)
      cGATCAACATCATAATTTGCCACCACCGAACCact                              >  1:9207/1‑33 (MQ=255)
      cGATCAACATCATAATTTGCCACCACCGAACCAAt                              >  1:4839508/1‑35 (MQ=255)
      cGATCAACATCATAATTTGCCACCACCGAACCAAt                              >  1:7150943/1‑35 (MQ=255)
      cGATCAACATCATAATTTGCCACCACCGAACCAAt                              >  1:7384007/1‑35 (MQ=255)
      cGATCAACATCATAATTTGCCACCACCGAACCAAt                              >  1:18703227/1‑35 (MQ=255)
      cGATCAACATCATAATTTGCCACCACCGAACCAAt                              >  1:9486385/1‑35 (MQ=255)
       gATCAACATCATAATTTGCCACCACCGAACCAATg                             >  1:17677003/1‑35 (MQ=255)
       gATCAACATCATAATTTGCCACCACCGAACCAATg                             >  1:14952807/1‑35 (MQ=255)
        aTCAACATCATAATTTGCCACCACCGAACCAATGc                            >  1:9756106/1‑35 (MQ=255)
         tCAACATCATAATTTGCCACCACCGAACCAATGcc                           >  1:8861223/1‑35 (MQ=255)
          cAACATCATAATTTGCCACCACCGAACCAATGCcg                          >  1:6514954/1‑35 (MQ=255)
          cAACATAATAATTTCCCCCCACCGAACCAATGCcg                          <  1:629899/35‑1 (MQ=25)
           aaCATCATAATTTGCCACCACCGAACCAATGCcgc                         >  1:14556920/1‑35 (MQ=255)
           aaCATCATAATTTGCCACCACCGAACCAATGCcgc                         >  1:14713503/1‑35 (MQ=255)
            aCATCATAATTTGCCACCACCGAACCAATGCcgcg                        >  1:5667277/1‑35 (MQ=255)
            aCATCATAATTTGCCACCACCGAACCAATGCcgcg                        >  1:3021227/1‑35 (MQ=255)
            aCATCATAATTTGCCACCACCGAACCAATGCcgcg                        >  1:12583252/1‑35 (MQ=255)
            aCATCATAATTTGCCACCACCGAACCAATGCcgcg                        >  1:11908246/1‑35 (MQ=255)
            aCATCATAATTTGCCACCACCGAACCAATGCcgcg                        >  1:11883496/1‑35 (MQ=255)
            aCATCATAATTTGCCACCACCGAACCAATGCcgcg                        >  1:17368758/1‑35 (MQ=255)
             catcatAATTTGCCACCACCGAACCAATGCCGCgg                       >  1:7345562/1‑35 (MQ=255)
             catcatAATTTGCCACCACCGAACCAATGCCGCgg                       >  1:7791033/1‑35 (MQ=255)
               tcatAATTTGCCCCCACCGAACAAATGCCGCGGAc                     <  1:9312562/35‑1 (MQ=25)
                 atatttcccccccaccgAACCAATGCCGCGGACaa                   <  1:19425606‑M2/18‑1 (MQ=255)
                 atAATTTGCCACCACCGAACCAATGCCGCGGACaa                   >  1:16344311/1‑35 (MQ=255)
                 atAATTTGCCACCACCGAACCAATGCCGCGGACaa                   >  1:10244980/1‑35 (MQ=255)
                 atAATTTCCCCCCACCGAACCAATGCCGCGGACaa                   <  1:15376468/35‑1 (MQ=37)
                 aaatttcccccccaccgAACCAATGCCGCGGACaa                   <  1:16101204‑M2/18‑1 (MQ=255)
                  tAATTTGCCACCACCGAACCAATGCCGCGGACaaa                  >  1:9742136/1‑35 (MQ=255)
                  tAATTTGCCACCACCGAACCAATGCCGCGGACaaa                  >  1:272710/1‑35 (MQ=255)
                  tAATTTGCCACCACCGAACCAATGCCGCGGACaaa                  >  1:5660998/1‑35 (MQ=255)
                  tAATTCCCCCCCCCCGAACCAATGCCGCGGACaaa                  <  1:5465209/35‑1 (MQ=19)
                   tttttccccccaccgAACCAATGCCGCGGACAAAg                 <  1:14172639‑M2/20‑1 (MQ=255)
                   atttcccccccaccgAACCAATGCCGCGGACAAAg                 <  1:19058345‑M2/20‑1 (MQ=255)
                   aaTTTGCCACCACCGAACCAATGCCGCGGACAAAg                 >  1:9442225/1‑35 (MQ=255)
                   aaTTTCCCCCCACCGAACCAATGCCGCGGACAAAg                 <  1:12322838/35‑1 (MQ=37)
                    tttgccccccaccgAACCAATGCCGCGGACAAAGt                <  1:2408103‑M2/21‑1 (MQ=255)
                    tttcccccccaccgAACCAATGCCGCGGACAAAGt                <  1:9161145‑M2/21‑1 (MQ=255)
                    aTTTGCCCCCACCGAACCAATGCCGCGGACAAAGt                <  1:346321/35‑1 (MQ=255)
                     tttGCCACCACCGAACCAATGCCGCGGACAAAGtt               >  1:14581580/1‑35 (MQ=255)
                      ttccccccaccgAACCAATGCCGCGGACAAAGTTa              <  1:8068942‑M2/23‑1 (MQ=255)
                      ttGCCACCACCGAACCAATGCCGCGGACAAAGTTa              >  1:3505408/1‑35 (MQ=255)
                      ttGCCACCACCGAACCAATGCCGCGGACAAAGTTa              >  1:5371736/1‑35 (MQ=255)
                        gCCACCACCGAACCAATGCCGCGGACAAAGTTAGc            >  1:19045408/1‑35 (MQ=255)
                         cccccaccgAACCAATGCCGCGGACAAAGTTAGCa           <  1:1149800‑M2/26‑1 (MQ=255)
                         cccccaccgAACCAATGCCGCGGACAAAGTTAGCa           <  1:844556‑M2/26‑1 (MQ=255)
                         cccccaccgAACCAATGCCGCGGACAAAGTTAGCa           <  1:6902590‑M2/26‑1 (MQ=255)
                         ccaccaCCGAACCAATGCCGCGGACAAAGTTAGCa           >  1:18588160/1‑35 (MQ=255)
                          caccacCGAACCAATGCCGCGGACAAAGTTAGCaa          >  1:4151369/1‑35 (MQ=255)
                           cccaccgAACCAATGCCGCGGACAAAGTTAGCaaa         <  1:13817666‑M2/28‑1 (MQ=255)
                           cccaccgAACCAATGCCGCGGACAAAGTTAGCaaa         <  1:3542413‑M2/28‑1 (MQ=255)
                           cccaccgAACCAATGCCGCGGACAAAGTTAGCaaa         <  1:2719871‑M2/28‑1 (MQ=255)
                           cccaccgAACCAATGCCGCGGACAAAGTTAGCaaa         <  1:13514938‑M2/28‑1 (MQ=255)
                           cccaccgAACCAATGCCGCGGACAAAGTTAGCaaa         <  1:17265318‑M2/28‑1 (MQ=255)
                           accaccGAACCAATGCCGCGGACAAAGTTAGCaaa         >  1:8069433/1‑35 (MQ=255)
                           accacaGAACCAATGCCGCGGACAAAGTTAGCaaa         <  1:4375073/35‑1 (MQ=255)
                           accacaGAACCAATGCCGCGGACAAAGTTAGCaaa         <  1:12477001/35‑1 (MQ=255)
                            ccaccgAACCAATGCCGCGGACAAAGTTAGCAAAg        <  1:1097208‑M2/29‑1 (MQ=255)
                            ccaccgAACCAATGCCGCGGACAAAGTTAGCAAAg        <  1:16255440‑M2/29‑1 (MQ=255)
                            ccaccgAACCAATGCCGCGGACAAAGTTAGCAAAg        >  1:2491644‑M2/7‑35 (MQ=255)
                            ccaccgAACCAATGCCGCGGACAAAGTTAGCAAAg        <  1:15614093‑M2/29‑1 (MQ=255)
                            ccaccgAACCAATGCCGCGGACAAAGTTAGCAAAg        <  1:9129269‑M2/29‑1 (MQ=255)
                            ccaccgAACCAATGCCGCGGACAAAGTTAGCAAAg        >  1:13491285‑M2/7‑35 (MQ=255)
                             caccgAACCAATGCCGCGGACAAAGTTAGCAAAgg       >  1:15689662‑M2/6‑35 (MQ=255)
                             caccgAACCAATGCCGCGGACAAAGTTAGCAAAgg       >  1:20113808‑M2/6‑35 (MQ=255)
                             caccgAACCAATGCCGCGGACAAAGTTAGCAAAgg       >  1:11707909‑M2/6‑35 (MQ=255)
                             caccgAACCAATGCCGCGGACAAAGTTAGCAAAgg       <  1:8603849‑M2/30‑1 (MQ=255)
                              accgAACCAATGCCGCGGACAAAGTTAGCAAAggt      <  1:11247831‑M2/31‑1 (MQ=255)
                              accgAACCAATGCCGCGGACAAAGTTAGCAAAggt      <  1:16334344‑M2/31‑1 (MQ=255)
                              accgAACCAATGCCGCGGACAAAGTTAGCAAAggt      >  1:16588386‑M2/5‑35 (MQ=255)
                              accgAACCAATGCCGCGGACAAAGTTAGCAAAggt      >  1:12163694‑M2/5‑35 (MQ=255)
                              accgAACCAATGCCGCGGACAAAGTTAGCAAAggt      >  1:17985398‑M2/5‑35 (MQ=255)
                               ccgAACCAATGCCGCGGACAAAGTTAGCAAAggtg     >  1:2903152‑M2/4‑35 (MQ=255)
                               ccgAACCAATGCCGCGGACAAAGTTAGCAAAggtg     >  1:14176664‑M2/4‑35 (MQ=255)
                               ccgAACCAATGCCGCGGACAAAGTTAGCAAAggtg     >  1:5363517‑M2/4‑35 (MQ=255)
                               ccgAACCAATGCCGCGGACAAAGTTAGCAAAggtg     >  1:7679221‑M2/4‑35 (MQ=255)
                                cgAACCAATGCCGCGGACAAAGTTAGCAAAggtgg    <  1:2691723‑M2/33‑1 (MQ=255)
                                cgAACCAATGCCGCGGACAAAGTTAGCAAAggtgg    <  1:6028298‑M2/33‑1 (MQ=255)
                                cgAACCAATGCCGCGGACAAAGTTAGCAAAggtgg    <  1:13323533‑M2/33‑1 (MQ=255)
                                cgAACCAATGCCGCGGACAAAGTTAGCAAAggtgg    <  1:6511292‑M2/33‑1 (MQ=255)
                                cgAACCAATGCCGCGGACAAAGTTAGCAAAggtgg    >  1:12731800‑M2/3‑35 (MQ=255)
                                cgAACCAATGCCGCGGACAAAGTTAGCAAAggtgg    <  1:12864899‑M2/33‑1 (MQ=255)
                                 gAACCAATGCCGCGGACAAAGTTAGCAAaggtgg  >  1:16055946‑M2/2‑34 (MQ=255)
                                 gAACCAATGCCGCGGACAAAGTTAGCAAAggtggt   >  1:17092772‑M2/2‑35 (MQ=255)
                                 gAACCAATGCCGCGGACAAAGTTAGCAAAggtggt   <  1:13149231‑M2/34‑1 (MQ=255)
                                 gAACCAATGCCGCGGACAAAGTTAGCAAAggtggt   <  1:13875058‑M2/34‑1 (MQ=255)
                                 gAACCAATGCCGCGGACAAAGTTAGCAAAggtggt   >  1:14797231‑M2/2‑35 (MQ=255)
                                  aaCCAATGCCGCGGACAAAGTTAGCAAAggtgggt  >  1:15486468/1‑33 (MQ=255)
                                  aaCCAATGCCGCGGACAAAGTTAGCAAATGTGGtt  >  1:4889478/1‑35 (MQ=255)
                                  aaCCAATGCCGCGGACAAAGTTAGCAAAGGTGGtt  <  1:19560872/35‑1 (MQ=255)
                                  aaCCAATGCCGCGGACAAAGTTAGCAAAGGTGGtt  <  1:13661015/35‑1 (MQ=255)
                                  |                                  
TCATGGCGATCAACATCATAATTTGCCACCACCGAACCAATGCCGCGGACAAAGTTAGCAAAGGTGGTT  >  REL606/836196‑836264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.