New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 32485 =59 (0.570)7 (0.070) 6/46 NT 12.4% coding (40/822 nt) dapB dihydrodipicolinate reductase
?REL606 = 671859 42 (0.430)coding (1118/1539 nt) lnt apolipoprotein N‑acyltransferase

GCCGCCTGAATCAACTGGCGGCCCATACGCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/32519‑32485
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGCCGCTGTCGGTAAATGGTATTGAGCTTACTGC  <  REL606/671859‑671826
                                                                     
GCCGCCTGAATCAACTGGCGGCCCATACGCCCCCC                                    >  1:12400694/1‑35
  CGCCTGAATCAACTGGCGGCCCATACGCCCCCCCG                                  >  1:6565032/1‑35
   GCCTGAATCAACTGGCGGCCCATAAGCCCCCCCGC                                 >  1:10769223/1‑35
                  CGGCCCATACCCCCCCCCGCCGCTGTCGGTAAATG                  <  1:1327696/35‑1
                   GGCCCATACCCCCCCCCGCCGCTGTCGGTAAATGG                 <  1:2157608/35‑1
                    GCCCATACCCCCCCCCGCCGCTGTCGGTAAATGGT                <  1:6016835/35‑1
                     CCCATACCCCCCCCCGCCGCTGTCGGTAAATGGTA               <  1:11745706/35‑1
                        ATACCCCCCCCCGCCGCTGTCGGTAAATGGTATTG            <  1:2312813/35‑1
                        ATACCCCCCCCCGCCGCTGTCGGTAAATGGTATTG            <  1:16167329/35‑1
                         TACCCCCCCCCGCCGCTGTCGGTAAATGGTATTGA           <  1:1329690/35‑1
                          cacCCCCCCCGCCGCTGTCGGTAAATGGTATTGAG          <  1:5856269/32‑1
                          accCCCCCCCGCCGCTGTCGGTAAATGGTATTGAG          <  1:11104106/32‑1
                          accCCCCCCCGCCGCTGTCGGTAAATGGTATTGAG          <  1:16635157/32‑1
                           ccCCCCCCCGCCGCTGTCGGTAAATGGTATTGAGC         <  1:8780359/33‑1
                             CCCCCCCGCCGCTGTCGGTAAATGGTATTGAGCTT       <  1:12654929/35‑1
                             CCCCCCCGCCGCTGTCGGTAAATGGTATTGAGCTT       <  1:4398186/35‑1
                             CCCCCCCGCCGCTGTCGGTAAATGGTATTGAGCTT       <  1:5144790/35‑1
                              CCCCCCGCCGCTGTCGGTAAATGGTATTGAGCTTA      <  1:8067245/35‑1
                              CCCCCCGCCGCTGTCGGTAAATGGTATTGAGCTTA      <  1:15670573/35‑1
                              CCCCCCGCCGCTGTCGGTAAATGGTATTGAGCTTA      <  1:2596441/35‑1
                               cgCCCGCCGCTGTCGGTAAATGGTATTGAGCTTAC     <  1:1969855/33‑1
                               CCCCCGCCGCTGTCGGTAAATGGTATTGAGCTTAC     <  1:8172436/35‑1
                               CCCCCGCCGCTGTCGGTAAATGGTATTGAGCTTAC     <  1:5808420/35‑1
                               CCCCCGCCGCTGTCGGTAAATGGTATTGAGCTTAC     <  1:18056523/35‑1
                                CCCCGCCGCTGTCGGTAAATGGTATTGAGCTTACT    <  1:4410801/35‑1
                                CCCCGCCGCTGTCGGTAAATGGTATTGAGCTTACT    <  1:3347716/35‑1
                                CCCCGCCGCTGTCGGTAAATGGTATTGAGCTTACT    <  1:11484819/35‑1
                                 CCCGCCGCTGTCGGTAAATGGTATTGAGCTTACTG   <  1:15587864/35‑1
                                 CCCGCCGCTGTCGGTAAATGGTATTGAGCTTACTG   <  1:1424975/35‑1
                                 CCCGCCGCTGTCGGTAAATGGTATTGAGCTTACTG   <  1:8048419/35‑1
                                  CCGCCGCTGTCGGTAAATGGTATTGAGCTTACTGC  <  1:16832207/35‑1
                                  CCGCCGCTGTCGGTAAATGGTATTGAGCTTACTGC  <  1:2130238/35‑1
                                                                     
GCCGCCTGAATCAACTGGCGGCCCATACGCCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/32519‑32485
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGCCGCTGTCGGTAAATGGTATTGAGCTTACTGC  <  REL606/671859‑671826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.