New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2840701 = | 74 (0.720) | 27 (0.270) | 8/46 | NT | 24.4% | coding (1097/1098 nt) | mltA | membrane‑bound lytic murein transglycosylase A |
? | REL606 | 3891539 = | 96 (0.970) | intergenic (‑85/‑138) | yieN/kup | fused predicted transcriptional regulator: sigma54 activator protein/conserved protein/potassium transporter |
ACCGCCCCGGGCGCAGGTAACGTCTTTAGCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2840735‑2840701 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGG > REL606/3891539‑3891572 cCCGCCCCGGGCGCAGGTAACGTCTTTAGCGGCTG < 1:3069595/34‑1 cCCGCCCCGGGCGCAGGTAACGTCTTTAGCGGCTG < 1:12928036/34‑1 cCCGCCCCGGGCGCAGGTAACGTCTTTAGCGGCTG < 1:13061119/34‑1 CCGCCCCGGGCGCAGGTAACGTCTTTAGCGGCTGG > 1:867488/1‑35 GCCCCGGGCGCAGGTAACGTCTTTAGCGGCTGGGG > 1:16426131/1‑35 GCCCCGGGCGCAGGTAACGTCTTTAGCGGCTGGGG > 1:6073460/1‑35 GCCCCGGGCGCAGGTAACGTCTTTAGCGGCTGGGG > 1:15871758/1‑35 CCCGGGCGCAGGTAACGTCTTTAGCGGCTGGGGGG > 1:1609758/1‑35 CCGGGCGCAGGTAACGTCTTTAGCGGCTGGTGGGG > 1:17128694/1‑35 CCGGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGc > 1:142281/1‑34 CCGGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGG > 1:2216413/1‑35 CCGGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGG > 1:20374650/1‑35 CGGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGGT > 1:3307985/1‑35 CGGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGGT > 1:17644781/1‑35 GGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGGga > 1:20160620/1‑33 GGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGGga > 1:18989422/1‑33 GGCGCAGGTAACGTCTTTAGCGGCTGGTGGGGTAT > 1:6679040/1‑35 GGCGCAGGTAACGTCTTTAGCGGCTGGGGGGGcaa > 1:13089583/1‑32 GCGCAGGTAACGTCTTTAGCGGCTGGGGGGGTATT > 1:6014331/1‑35 GCGCAGGTAACGTCTTTAGCGGCTGGGGGGGTATT > 1:7687687/1‑35 CGCAGGTAACGTCTTTAGCGGCTGGGGGGGTTTTT > 1:8837548/1‑35 CGCAGGTAACGTCTTTAGCGGCTGGGGGGGTGTTT > 1:3875650/1‑35 CGCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTT > 1:5918085/1‑35 CGCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTT > 1:10272572/1‑35 GCAGGTAACGTCTTTAGCGGCTGGGGTGGTATTTT > 1:8748661/1‑35 GCAGGTAACGTCTTTAGCGGCTGGGGGGGTTTTTc > 1:17847163/1‑34 GCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTct > 1:20240324/1‑33 GCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTTT > 1:20029582/1‑35 GCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTTT > 1:18348267/1‑35 GCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTTT > 1:16206997/1‑35 GCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTTT > 1:10167706/1‑35 CAGGTAACGTCTTTAGCGGCTGGGGGGGTATTTTT > 1:2115748/1‑35 CAGGTAACGTCTTTAGCGGCTGGGGGGGTATTTTT > 1:12473859/1‑35 GGTAACGTCTTTAGCGGCTGGGGGGGTATTTTTtt > 1:15846926/1‑33 GGTAACGTCTTTAGCGGCTGGGGGGGTATTTTTtt > 1:932120/1‑33 TAACGTCTTTAGCGGCTGGGGGGGTATTTTTTTTT > 1:8422934/1‑35 GGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGG > 1:20212054/1‑35 GGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGG > 1:7306471/1‑35 GGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGG > 1:1269890/1‑35 GGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGG < 1:10862690/35‑1 ACCGCCCCGGGCGCAGGTAACGTCTTTAGCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2840735‑2840701 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGG > REL606/3891539‑3891572 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |