Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,162,790 IS150 (–) +3 bp 41.7% coding (601‑603/1071 nt) plsX → fatty acid/phospholipid synthesis protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)45 (0.480) 28/44 NT 38.5% noncoding (1/1443 nt) IS150 repeat region
?REL606 1162790 = 62 (0.760)coding (601/1071 nt) plsX fatty acid/phospholipid synthesis protein
* ? REL606 = 666130NA (NA)46 (0.450) 24/48 NT 38.2% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 1162792 65 (0.720)coding (603/1071 nt) plsX fatty acid/phospholipid synthesis protein

Only 100 of 244 total aligned reads displayed.

AGTAAAGGGTCTCGACAGTATTCGGGATGCCTCAGCGGTGCTTAAAACAATCCCTTCTATCAATTATAT  >  REL606/1162756‑1162824
                                  |                                  
 gTAAAGGGTCTCGACAGTATTCGGGATGCCTCAGc                                   >  1:6211443/1‑35 (MQ=255)
 gTAAAGGGTCTCGACAGTATTCGGGATGCCTCAGc                                   >  1:3275780/1‑35 (MQ=255)
 gTAAAGGGTCTCGACAGTATTCGGGATGCCTCAGc                                   >  1:1695424/1‑35 (MQ=255)
 gTAAAGGGTCTCGACAGTATTCGGGATGCCTCAGc                                   <  1:16905856/35‑1 (MQ=255)
  tAAAGGGTCTCGACAGTATTTGGGATGCCTCAGCg                                  <  1:2581167/35‑1 (MQ=255)
  tAAAGGGTCTCGACAGTATTCGGGATGCCTCTGCg                                  >  1:14187174/1‑35 (MQ=255)
  tAAAGGGTCTCGACAGTATTCGGGATGCCTCAGCg                                  >  1:18718199/1‑35 (MQ=255)
  atttcatcgtccaacaaaatgggtgcagtagaGCg                                  <  1:5318983‑M2/3‑1 (MQ=255)
   aaaGGGTCTCGACAGTATTCGGGATGCCTCAGCGt                                 >  1:3338767‑M2/1‑34 (MQ=255)
   aaaGGGTCTCGACAGTATTCGGGATGCCTCAGCGt                                 <  1:19536715‑M2/35‑2 (MQ=255)
   aaaGGGTCTCGACAGTATTCGGGATGCCTCAGCGt                                 <  1:17858300‑M2/35‑2 (MQ=255)
    aaGGGTCTCGACAGTATTCGGGATGCCTCAGCGtg                                <  1:7881293‑M2/35‑3 (MQ=255)
      gggTCTCGACAGTATTCGGGATGCCTCAGCGGTGc                              <  1:9895465/35‑1 (MQ=255)
      gggTCTCGACAGTATTCGGGATGCCTCAGCGGGGc                              >  1:5929017/1‑35 (MQ=255)
      catcgtccaacaaaatgggtgcagtacaGCGGTGc                              <  1:1360710‑M2/7‑1 (MQ=255)
       ggTCTCGACAGTATTCGGGATGCCTCAGCGtgtac                             >  1:3803051‑M2/1‑30 (MQ=255)
       ggTCTCGACAGTATTCGGGATGCCTCAGCGtgtac                             <  1:13885845‑M2/35‑6 (MQ=255)
       ggTCTCGACAGTATTCGGGATGCCTCAGCGGTGCt                             <  1:11256948/35‑1 (MQ=255)
       atcgtccaacaaaatgggtgcagtacaGCGGTGCt                             <  1:12065471‑M2/8‑1 (MQ=255)
        tcgtccaacaaaatgggtgcagtacaGCGGTGCtt                            <  1:4764791‑M2/9‑1 (MQ=255)
        gTCTCGACAGTATTCGGGATGCCTCAGCGtgtact                            >  1:10661108‑M2/1‑29 (MQ=255)
         tctcGACAGTATTCGGGATGCCTCAGCGtgtactg                           >  1:12752988‑M2/1‑28 (MQ=255)
         tctcGACAGTATTCGGGATGCCTCAGCGGTGCTTa                           <  1:150128/35‑1 (MQ=255)
         cgtccaacaaaatgggtgcagtacaGCGGTGCTTa                           <  1:3692775‑M2/10‑1 (MQ=255)
         cgtccaacaaaatgggtgcagtacaGCGGTGCTTa                           <  1:716019‑M2/10‑1 (MQ=255)
          gtccaacaaaatgggtgcagtacaGCGGTGCTTaa                          >  1:13223400‑M2/25‑35 (MQ=255)
           tccaacaaaatgggtgcagtacaGCGGTGCTTaaa                         >  1:18004246‑M2/24‑35 (MQ=255)
           tcGACAGTATTCGGGATGCCTCAGCGGTGCTTaaa                         <  1:4267505/35‑1 (MQ=255)
           tcGACAGTATTCGGGATGCCTCAGCGGTGCTTaaa                         <  1:9638526/35‑1 (MQ=255)
            ccaacaaaatgggtgcagtacaGCGGTGCTTaaaa                        >  1:19821404‑M2/23‑35 (MQ=255)
            cGACAGTATTCGGGATGCCTCAGCGtgtactgacc                        <  1:5183611‑M2/35‑11 (MQ=255)
            cGACAGTATTCGGGATGCCTCAGCGGTGCTTaaaa                        <  1:9258249/35‑1 (MQ=255)
             gACAGTATTCGGGATGCCTCAGCGGTGCTTAAAAc                       >  1:10401932/1‑35 (MQ=255)
             gACAGTATTCGGGATGCCTCAGCGGTGCTTAAAAc                       <  1:16389790/35‑1 (MQ=255)
             gACAGTATTAGGGATGCCTCAGCGtgtactgaccc                       >  1:634360‑M2/1‑24 (MQ=255)
              aacaaaatgggtgcagtacaGCGGTGCTTAAAACa                      <  1:12486947‑M2/15‑1 (MQ=255)
              aacaaaatgggtgcagtacaGCGGTGCTTAAAACa                      <  1:15827723‑M2/15‑1 (MQ=255)
              aCAGTATTCGGGATGCCTCAGCGGTGCTTAAAACa                      <  1:2874880/35‑1 (MQ=255)
              aCAGTATTCGGGATGCCTCAGCGGTGCTTAAAACa                      >  1:18581379/1‑35 (MQ=255)
               cAGTATTCGGGATGCCTCAGCGGTGCTTAAAACaa                     >  1:13069878/1‑35 (MQ=255)
               cAGTATTCGGGATGCCTCAGCGGTGCTTAAAACaa                     >  1:12900806/1‑35 (MQ=255)
                caaaatgggtgcagtacaGCGGTGCTTAAAACAAt                    <  1:10089693‑M2/17‑1 (MQ=255)
                 gTATTCGGGATGCCTCAGCGGTGCTTAAAACAATc                   <  1:18255772/35‑1 (MQ=255)
                  tATTCGGGATGCCTCAGCGGTGCTTAAAACAATcc                  <  1:2031525/35‑1 (MQ=255)
                  tATTCGGGATGCCTCAGCGGTGCTTAAAACAATcc                  <  1:12229750/35‑1 (MQ=255)
                  aaatgggtgcagtacaGCGGTGCTTAAAACAATcc                  <  1:4208932‑M2/19‑1 (MQ=255)
                  aaatgggtgcagtacaGCGGTGCTTAAAACAATcc                  <  1:3555604‑M2/19‑1 (MQ=255)
                   aatgggtgcagtacaGCGGTGCTTAAAACAATccc                 <  1:14317549‑M2/20‑1 (MQ=255)
                   aatgggtgcagtacaGCGGTGCTTAAAACAATccc                 <  1:2281084‑M2/20‑1 (MQ=255)
                   aTTCGGGATGCCTCAGCGtgtactgaccccaaaaa                 <  1:16063033‑M2/35‑18 (MQ=255)
                   aTTCGGGATGCCTCAGCGtgtactgaccccaaaaa                 <  1:13746057‑M2/35‑18 (MQ=255)
                   aTTCGGGATGCCTCAGCGtgtactgaccccaaaaa                 <  1:6302736‑M2/35‑18 (MQ=255)
                   aTTCGGGATGCCTCAGCGtgtactgacccaaaaaa                 >  1:10331495‑M2/1‑18 (MQ=255)
                     tgggtgcagtacaGCGGTGCTTAAAACAATCCCtt               >  1:15275970‑M2/14‑35 (MQ=255)
                     tCGGGATGGCTCAGCGGTGCTTAAAACAATCCCtt               <  1:19972038/35‑1 (MQ=255)
                     tCGCGATGCCTCAGCGGTGCTTAAAACAATCCCtt               >  1:11371158/1‑35 (MQ=255)
                      gggtgcattacaGCGGTGCTTAAAACAATCCCTTc              >  1:12273099‑M2/13‑35 (MQ=255)
                      gggtgcagtacaGCGGTGCTTAAAACAATCCCTTc              >  1:16431358‑M2/13‑35 (MQ=255)
                      cGGGATGCCTCAGCGtgtactgaccccaaaaagtt              <  1:2083892‑M2/35‑21 (MQ=255)
                      cGGGATGCCTCAGCGtgtactgaccccaaaaagtt              <  1:19645514‑M2/35‑21 (MQ=255)
                      cGGGATGCCTCAGCGGTGCTTAAAACAATCCCTTc              <  1:6783209/35‑1 (MQ=255)
                      cGGGATGCCTCAGCGGTGCTTAAAACAATCCCTTc              <  1:6062243/35‑1 (MQ=255)
                       ggtgcagtacaGCGGTGCTTAAAACAATCCCTTCt             <  1:2661994‑M2/24‑1 (MQ=255)
                       gggATGCCTCAGCGtgtactgaccccaaaaagttg             <  1:15395553‑M2/35‑22 (MQ=255)
                       gggATGCCTCAGCGGTGCTTAAAACAATCCCTTCt             <  1:11827347/35‑1 (MQ=255)
                       gggATGCCTCAGCGGTGCTTAAAACAATCCCTTCt             <  1:8069041/35‑1 (MQ=255)
                       gggATGCCTCAGCGGTGCTTAAAACAATCCATTCt             <  1:14125729/35‑1 (MQ=255)
                        ggATGCCTCAGCGtgtactgaccccaaaaagttgg            >  1:11114101‑M2/1‑13 (MQ=255)
                        ggATGCCTCAGCGtgtactgaccccaaaaagttgg            >  1:12408084‑M2/1‑13 (MQ=255)
                         tgcagtacaGCGGTGCTTAAAACAATCCCTTCTAt           <  1:15206981‑M2/26‑1 (MQ=255)
                         tgcagtacaGCGGTGCTTAAAACAATCCCTTATAt           <  1:7580744‑M2/26‑1 (MQ=255)
                         gATGCCTCAGCGtgtactgaccccaaaaagttgga           >  1:15752045‑M2/1‑12 (MQ=255)
                         gATGCCTCAGCGGTGCTTAAAACAATCCCTTCTAt           <  1:18663522/35‑1 (MQ=255)
                         gATGCCTCAGCGGTGCTTAAAACAATCCCTTCTAt           <  1:18909184/35‑1 (MQ=255)
                         gATGCCTCAGCGGTGCTTAAAACAATCCCTTCTAt           <  1:6888776/35‑1 (MQ=255)
                         gATGCCTCAGCGGTGCTTAAAACAATCCCTTCTAt           <  1:683484/35‑1 (MQ=255)
                           tGCCTCAGCGGTGCTTAAAACAATCCCTTCTATCa         <  1:10826549/35‑1 (MQ=255)
                           cagtacaGCGGTGCTTAAAACAATCCCTTCTATCa         <  1:17535021‑M2/28‑1 (MQ=255)
                           cagtacaGCGGTGCTTAAAACAATCCCTTCTATCa         <  1:2815221‑M2/28‑1 (MQ=255)
                            agtacaGCGGTGCTTAAAACAATCCCTTCTATCaa        <  1:873773‑M2/29‑1 (MQ=255)
                            agtacaGCGGTGCTTAAAACAATCCCTTCTATCaa        <  1:3480627‑M2/29‑1 (MQ=255)
                             gtacaGCGGTGCTTAAAACAATCCCTTCTATCAAt       >  1:18476720‑M2/6‑35 (MQ=255)
                             gtacaGCGGTGCTTAAAACAATCCCTTCTATCAAt       >  1:7330664‑M2/6‑35 (MQ=255)
                             ccTCAGCGGTGCTTAAAACAATCCCTTCTATCAAt       >  1:4457070/1‑35 (MQ=255)
                             ccTCAGCGGTGCTTAAAACAATCCCTTCTATCAAt       >  1:2731243/1‑35 (MQ=255)
                              tacaGCGGTGCTTAAAACAATCCCTTCTATCAAtt      <  1:7407231‑M2/31‑1 (MQ=255)
                              cTCAGCGGTGCTTAAAACAATCCCTTCTATCAAtt      >  1:7187737/1‑35 (MQ=255)
                              cTCAGCGGTGCTTAAAACAATCCCTTCTATCAAtt      <  1:2054996/35‑1 (MQ=255)
                               tCAGCGtgtactgaccccaaaaagttggacagtta     >  1:19195676‑M2/1‑6 (MQ=255)
                               tCAGCGtgtactgaccccaaaaagttggacagtta     <  1:10732207‑M2/35‑30 (MQ=255)
                               tCAGCGGTGCTTAAAACAATCCCTTCTATCAATta     <  1:781256/35‑1 (MQ=255)
                                caGCGGTGCTTAAAACAATCCCTTCTATCAATtat    <  1:17260845‑M2/33‑1 (MQ=255)
                                caGCGGTGCTTAAAACAATCCCTTCTATCAATtat    >  1:8186059‑M2/3‑35 (MQ=255)
                                caGCGGTGCTTAAAACAATCCCTTCTATCAATtat    <  1:14214597‑M2/33‑1 (MQ=255)
                                caGCGGTGCTTAAAACAATACCTTCTATCAATtat    <  1:5594884‑M2/33‑1 (MQ=255)
                                 aGCGGTGCTTAAAACAATCCCTTCTATCAATtata   >  1:20246806‑M2/2‑35 (MQ=255)
                                 aGCGGTGCTTAAAACAATCCCTTCTATCAATtata   >  1:11581118‑M2/2‑35 (MQ=255)
                                 aGCGGTGCTTAAAACAATCCCTTCTATCAATtata   <  1:5199299‑M2/34‑1 (MQ=255)
                                 aGCGGTGCTTAAAACAATCCCTTCTATCAATtata   <  1:11025964‑M2/34‑1 (MQ=255)
                                  gCGGTGCTTAAAACAATCCCTTCTATCAATTatat  >  1:2160692/1‑35 (MQ=255)
                                  |                                  
AGTAAAGGGTCTCGACAGTATTCGGGATGCCTCAGCGGTGCTTAAAACAATCCCTTCTATCAATTATAT  >  REL606/1162756‑1162824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.