New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 298140148 (0.470)13 (0.170) 5/36 NT 15.6% coding (553/705 nt) yggS predicted enzyme
?REL606 3882315 = 105 (1.360)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

GAATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTG‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2981362‑2981401
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGGGGGTTTTGTG  >  REL606/3882315‑3882326
                                                    
GAATATGTAAGGCAGTTTGAAGTTGCACGCCAAAT                   >  1:17949382/1‑35
GAATATGTAAGGCAGTTTGAAGTTGCACGCCAAAT                   <  1:19908427/35‑1
GAATATGTAAGGCAGTTTGAAGTTGCACGCCAAAT                   >  1:8040717/1‑35
GAATATGTAAGGCAGTTTGAAGTTGCACGCCAAAT                   >  1:11645589/1‑35
GAATATGTAAGGCAGTTTGAAGTTGCACGCCAAAT                   <  1:6847765/35‑1
 AATATGTAAGGCAGTTTGAAGTTGCACGCCAAATG                  >  1:11851869/1‑35
  ATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGG                 >  1:19878140/1‑35
  ATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGG                 >  1:16158008/1‑35
  ATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGG                 >  1:2913868/1‑35
  ATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGG                 >  1:4539450/1‑35
  ATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGG                 >  1:12749764/1‑35
  ATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGG                 >  1:12637612/1‑35
  ATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGG                 <  1:6547361/35‑1
  ATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGG                 >  1:12240813/1‑35
  ATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGG                 <  1:7660781/35‑1
  ATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGG                 <  1:8595333/35‑1
  ATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGG                 >  1:10048638/1‑35
   TATGTAAGGCAGTTTGAAGTTGCACGCCAAATGGC                <  1:2217584/35‑1
   TATGTAAGGCAGTTTGAAGTTGCACGCCAAATGGC                <  1:9182945/35‑1
    ATGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCT               <  1:5120129/35‑1
    ATGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCT               <  1:9757497/35‑1
    ATGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCT               <  1:19858617/35‑1
    ATGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCT               >  1:19462937/1‑35
     TGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTG              <  1:10906589/35‑1
     TGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTG              <  1:15712929/35‑1
     TGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTG              <  1:12199610/35‑1
     TGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTG              >  1:12275016/1‑35
      GTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGG             >  1:9618957/1‑35
      GTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGG             >  1:18351706/1‑35
      GTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTGG             >  1:8228982/1‑35
        AAGGCAGTTTGAAGTTGCACGCCAAATGGCTGGGG           >  1:3045813/1‑35
        AAGGCAGTTTGAAGTTGCACGCCAAATGGCTGGGG           >  1:7053938/1‑35
        AAGGCAGTTTGAAGTTGCACGCCAAATGGCTGGGG           >  1:15692720/1‑35
         AGGCAGTTTGAAGTTGCACGCCAAATGGCTGGGGG          >  1:17873156/1‑35
         AGGCAGTTTGAAGTTGCACGCCAAATGGCTGGGGG          >  1:1597008/1‑35
           GCAGTTTGAAGTTGCACGCCAAATGGCTGGGGGGg        >  1:9435547/1‑34
           GCAGTTTGAAGTTGCACGCCAAATGGCTGGGGGGg        >  1:8013564/1‑34
            CAGTTTGAAGTTGCACGCCAAATGGCTGGGGGGgt       >  1:10205804/1‑33
            CAGTTTGAAGTTGCACGCCAAATGGCTGGGGGGgt       >  1:18458634/1‑33
            CAGTTTGAAGTTGCACGCCAAATGGCTGGGGGGct       >  1:10276653/1‑33
            CAGTTTGAAGTTGCACGCCAAATGGCTGGGGGGTT       >  1:3783487/1‑35
            CAGTTTGAAGTTGCACGCCAAATGGCTGGGGGGTT       >  1:15921627/1‑35
            CAGTTTGAAGTTGCACGCCAAATGGCTGGGGGGTT       >  1:18888665/1‑35
             AGTTTGAAGTTGCACGCCAAATGGCTGGGGGGTgt      >  1:4629848/1‑33
             AGTTTGAAGTTGCACGCCAAATGGCTGGGGGGTTT      >  1:15471985/1‑35
             AGTTTGAAGTTGCACGCCAAATGGCTGGGGGGGTT      >  1:11617320/1‑35
             AGTTTGAAGTTGCACGCCAAATGGCTGGGGGGGTT      >  1:176799/1‑35
              GTTTGAAGTTGCACGCCAAATGGCTGGGGGGGTTg     >  1:8515318/1‑34
              GTTTGAAGTTGCACGCCAAATGGCTGGGGGGGTTT     >  1:9556537/1‑35
              GTTTGAAGTTGCACGCCAAATGGCTGGGGGATTTg     >  1:8652427/1‑34
               TTTGAAGTTGCACGCCAAATGGCTGGGGGGTTTTG    >  1:11584827/1‑35
               TTTGAAGTTGCACGCCAAATGGCTGGGGGGGTTTt    >  1:2631182/1‑34
                 TGAAGTTGCACGCCAAATGGCTGGGGGGGTTTGTG  >  1:3808703/1‑35
                                                    
GAATATGTAAGGCAGTTTGAAGTTGCACGCCAAATGGCTG‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2981362‑2981401
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGGGGGTTTTGTG  >  REL606/3882315‑3882326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.