New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 351749069 (0.670)13 (0.130) 8/48 NT 14.7% coding (10/1743 nt) ggt gamma‑glutamyltranspeptidase periplasmic precursor
?REL606 = 4266659 82 (0.800)intergenic (‑355/‑38) acs/nrfA acetyl‑coenzyme A synthetase/nitrite reductase, formate‑dependent, cytochrome

Only 100 of 143 total aligned reads displayed.

AGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCC  >  REL606/4266625‑4266693
                                  |                                  
aGGTGCGGTTACTGTCGTGAAAAACAATAAAAAcc                                    <  1:11460054/35‑1 (MQ=255)
 ggTGCGGTTACTGTCGTGAAAAACAATAAAAACCg                                   <  1:15023501/35‑1 (MQ=255)
 ggTGCGGTTACTGTCGTGAAAAACAATAAAAACCg                                   <  1:15776274/35‑1 (MQ=255)
  gTGCGTTTCCTGTCGTGAAAAACAATAAAAACCGc                                  <  1:4756042/35‑1 (MQ=38)
  gTGCGGTTACTGTCGTGAAAAACAATAAAAACCGc                                  <  1:8234692/35‑1 (MQ=255)
   tGCGGTTACTGTCGTGAAAAACAATAAAAACCGcc                                 >  1:18974187/1‑35 (MQ=255)
   tGCGGTTACTGTCGTGAAAAACAATAAAAACCGcc                                 >  1:11548445/1‑35 (MQ=255)
     cGGTTACTGTCGTGAAAAACAATAAAAACCGCCAt                               >  1:3258157/1‑35 (MQ=255)
     cGGTTACTGTCGTGAAAAACAATAAAAACCGCCAt                               >  1:10409958/1‑35 (MQ=255)
     cGGTTACTGTCGTGAAAAACAATAAAAACCGCCAt                               >  1:20575529/1‑35 (MQ=255)
     cGGTTACTGTCGTGAAAAACAATAAAAACCGCCAt                               >  1:10714533/1‑35 (MQ=255)
     cGGTTACTGTCGTGAAAAACAATAAAAACCGCCAt                               >  1:9291103/1‑35 (MQ=255)
        ttACTGTCGTGAAAAACAATAAAAACCGCCATTGc                            >  1:13667475/1‑35 (MQ=255)
         tACTGTCGTGAAAAACAATAAAAACCGCCATTGca                           >  1:1294903/1‑35 (MQ=255)
         tACTGTCGTGAAAAACAATAAAAACCGCCATTGca                           >  1:7008387/1‑35 (MQ=255)
         tACTGTCGTGAAAAACAATAAAAACCGCCATTGca                           >  1:7508926/1‑35 (MQ=255)
         tACTGTCGTGAAAAACAATAAAAACCGCCATTGca                           >  1:3723101/1‑35 (MQ=255)
          aCTGTCGTGAAAAACAATAAAAACCGCCATTGcaa                          >  1:20048375/1‑35 (MQ=255)
          aCTGTCGTGAAAAACAATAAAAACCGCCATTGcaa                          >  1:6236158/1‑35 (MQ=255)
          aCTGTCGTGAAAAACAATAAAAACCGCCATTGcaa                          >  1:10466731/1‑35 (MQ=255)
           cTGTCGTGAAAAACAATAAAAACCGCCATTGcaac                         >  1:5701300/1‑35 (MQ=255)
           cTGTCGTGAAAAACAATAAAAACCGCCATTGcaac                         >  1:9786250/1‑35 (MQ=255)
            tGTCGTGAAAAACAATAAAAACCGCCATTGcaaca                        >  1:3844130/1‑35 (MQ=255)
            tGTCGTGAAAAACAATAAAAACCGCCATTGcaaca                        >  1:7024120/1‑35 (MQ=255)
            tGTCGTGAAAAACAATAAAAACCGCCATTGcaaca                        >  1:8276828/1‑35 (MQ=255)
            tGTCGTGAAAAACAATAAAAACCGCCATTGcaaca                        >  1:10353951/1‑35 (MQ=255)
             gTCGTGAAAAACATTAAAAACCGCCATTGcaacaa                       >  1:2701133/1‑35 (MQ=255)
             gTCGTGAAAAACAATAAAAACCGCCATTGcaacaa                       >  1:2276676/1‑35 (MQ=255)
             gTCGTGAAAAACAATAAAAACCGCCATTGcaacaa                       >  1:8665341/1‑35 (MQ=255)
             gTCGTGAAAAACAATAAAAACCGCCATTGcaacaa                       >  1:19933213/1‑35 (MQ=255)
              tCGTGAAAAACAATAAAAACCGCCATTGCAACAAt                      >  1:11898789/1‑35 (MQ=255)
              tCGTGAAAAACAATAAAAACCGCCATTGCAACAAt                      >  1:5018457/1‑35 (MQ=255)
               cGTGAAAAACAATAAAAACCGCCATTGCAACAATg                     >  1:17898945/1‑35 (MQ=255)
                gTGAAGAACAATAAAAACCGCCATTGCAACAATgg                    >  1:19197091/1‑35 (MQ=255)
                gTGAAAAACAATAAAAACCGCCATTGCAACAATgg                    >  1:3627194/1‑35 (MQ=255)
                gTGAAAAACAATAAAAACCGCCATTGCAACAATgg                    >  1:9725772/1‑35 (MQ=255)
                gTGAAAAACAATAAAAACCGCCATTGCAACAATgg                    >  1:4603795/1‑35 (MQ=255)
                gTGAAAAACAATAAAAACCGCCATTGCAACAATgg                    >  1:9259120/1‑35 (MQ=255)
                gTGAAAAACAATAAAAACCGCCATTGCAACAATgg                    >  1:810681/1‑35 (MQ=255)
                gTGAAAAACAATAAAAACCGCCATTGCAACAATgg                    >  1:17838934/1‑35 (MQ=255)
                gTGAAAAACAATAAAAACCGCCATTGCAACAATgg                    >  1:1475832/1‑35 (MQ=255)
                gTGAAAAACAATAAAAACCGCCATTGCAACAATgg                    >  1:16700395/1‑35 (MQ=255)
                gTGAAAAACAATAAAAACCGCCAATGCAACAATgg                    >  1:18706866/1‑35 (MQ=255)
                gTGAAAAACAATAAAAACCGCAATTGCAACAATgg                    <  1:10550341/35‑1 (MQ=255)
                 tGAAAAACAATAAAAACCGCCATTGCAACAATGgc                   >  1:8250621/1‑35 (MQ=255)
                 tGAAAAACAATAAAAACCGCCATTGCAACAATGgc                   >  1:18851616/1‑35 (MQ=255)
                 tGAAAAACAATAAAAACCGCCATTGCAACAATGgc                   >  1:18121225/1‑35 (MQ=255)
                  gAAAAACAATAAAAACCGCCATTGCAACAATGgcg                  >  1:6178822/1‑35 (MQ=255)
                   aaaaaCAATAAAAACCccgacgtttttacgccggg                 >  1:8887032‑M2/1‑16 (MQ=255)
                   aaaaaCAATAAAAACCGCCATTGCAACAATGgcgc                 >  1:12785660/1‑35 (MQ=255)
                   aaaaaCAATAAAAACCGCCATTGCAACAATGgcgc                 >  1:20216765/1‑35 (MQ=255)
                    aaaaCAATAAAAACCGCCATTGCAACAATGGCGCa                >  1:12461512/1‑35 (MQ=255)
                    aaaaCAATAAAAACCGCCATTGCAACAATGGCGCa                >  1:3317841/1‑35 (MQ=255)
                    aaaaCAATAAAAACCGCCATTGCAACAATGGCGCa                >  1:14892800/1‑35 (MQ=255)
                     aaaCAATGAAAACCccgacgtttttacgccgggtg               >  1:14343073‑M2/1‑14 (MQ=255)
                     aaaCAATAAAAACCGCCATTGCAACAATGGCGCaa               >  1:13698390/1‑35 (MQ=255)
                      aaCGATAAAAACCccgacgtttttacgccgggtgg              >  1:4209508‑M2/1‑13 (MQ=255)
                      aaCAATAAAAACCGCCATTGCAACAATGGCGCAAt              >  1:3063173/1‑35 (MQ=255)
                      aaCAAAAAAAACCccgacgtttttacgccgggtgg              >  1:17312233‑M2/1‑13 (MQ=255)
                       aCAATAAAAACCGCCATTGCAACAATGGCGCAAtt             >  1:20171280/1‑35 (MQ=255)
                       aCAATAAAAACCGCCATTGCAACAATGGCGCAAtt             >  1:13584927/1‑35 (MQ=255)
                        cAATAAAACCCccgacgtttttacgccgggtggcc            >  1:4371276‑M2/1‑11 (MQ=255)
                        cAATAAAAACCGCCATTGCAACAATGGCGCAATTc            >  1:8392827/1‑35 (MQ=255)
                         aaTAAAAACCGCCATTGCAACAATGGCGCAATTCg           >  1:9328936/1‑35 (MQ=255)
                         aaTAAAAAACccgacgtttttacgccgggtggcca           >  1:9170726‑M2/1‑10 (MQ=255)
                         aaAAAAAACCccgacgtttttacgccgggtggcca           >  1:15193966‑M2/1‑10 (MQ=255)
                          aTAAAAACCGCCATTGCAACAATGGCGCAATTCgg          >  1:2645937/1‑35 (MQ=255)
                          aTAAAAACCGCCATTGCAACAATGGCGCAATTCgg          >  1:8399427/1‑35 (MQ=255)
                          aTAAAAACCGCCATTGCAACAATGGCGCAATTCgg          >  1:5223260/1‑35 (MQ=255)
                           tAAAAACCGCCATTGCAACAATGGCGCAATTCGGa         >  1:9838595/1‑35 (MQ=255)
                           tAAAAACCGCCATTGCAACAATGGCGCAATTCGGa         >  1:16237897/1‑35 (MQ=255)
                           tAAAAACCGCCATTGCAACAATGGCGCAATTCGGa         >  1:3947712/1‑35 (MQ=255)
                           tAAAAACCGCCATTGCAACAATGGCGCAATTCGGa         >  1:18732296/1‑35 (MQ=255)
                           tAAAAACCGCCATTGCAACAATGGCGCAATTCGGa         >  1:1652223/1‑35 (MQ=255)
                            aaaacCCccgacgtttttacgccgggtggccattg        >  1:15700351‑M2/1‑7 (MQ=255)
                            aaaacCCccgacgtttttacgccgggtggccattg        >  1:12190113‑M2/1‑7 (MQ=255)
                            aaaaaCCGCCATTGCAACAATGGCGCAATTCGGAt        >  1:13782328/1‑35 (MQ=255)
                            aaaaaCCGCCATTGCAACAATGGCGCAATTCGGAt        >  1:20425373/1‑35 (MQ=255)
                             aaacCCccgacgtttttacgccgggtggccattgc       >  1:18674071‑M2/1‑6 (MQ=255)
                             aaaaCCGCCATTGCAACAATGGCGCAATTCGGATg       >  1:5447218/1‑35 (MQ=255)
                             aaaaCCGCCATTGCAACAATGGCGCAATTCGGATg       >  1:4735554/1‑35 (MQ=255)
                              aacCCccgacgtttttacgccgggtggccattgct      >  1:17697441‑M2/1‑5 (MQ=255)
                              aacCCccgacgtttttacgccgggtggccattgct      >  1:2412569‑M2/1‑5 (MQ=255)
                              aaaCCGCCATTGCAACAATGGCGCAATTCGGATGa      >  1:13770871/1‑35 (MQ=255)
                              aaaCCGCCATTGCAACAATGGCGCAATTCGGATGa      >  1:16144908/1‑35 (MQ=255)
                              aaaCCGCCATTGCAACAATGGCGCAATTCGGATGa      >  1:6397361/1‑35 (MQ=255)
                               ccccGCCATTGCAACAATGGCGCAATTCGGATGaa     <  1:18274349/33‑1 (MQ=255)
                               ccccGCCATTGCAACAATGGCGCAATTCGGATGaa     <  1:11817490/33‑1 (MQ=255)
                               aaCCccgacgtttttacgccgggtggccattgctg     >  1:11883899‑M2/1‑4 (MQ=255)
                               aaCCGCCATTGCAACAATGGCGCAATTCGGATGaa     >  1:9351258/1‑35 (MQ=255)
                                aCCccgacgtttttacgccgggtggccattgctgc    >  1:20453676‑M2/1‑3 (MQ=255)
                                aCCGCCATTGCAACAATGGCGCAATTCGGATGAAg    >  1:4487924/1‑35 (MQ=255)
                                aCCGCCATTGCAACAATGGCGCAATTCGGATGAAg    >  1:20080477/1‑35 (MQ=255)
                                aCCGCCATTGCAACAATGGCGCAATTCGGATGAAg    >  1:2779531/1‑35 (MQ=255)
                                 ccccgacgtttttacgccgggtggccattgctgct   >  1:16473555‑M2/1‑2 (MQ=255)
                                 ccGCCATTGCAACAATGGCGCAATTCGGATGAAGc   >  1:15460500/1‑35 (MQ=255)
                                  cccgacgtttttacgccgggtggccattgctgctc  >  1:18039722‑M2/1‑1 (MQ=255)
                                  cGCCATTGCAACAATGGCGCAATTCGGATGAAGcc  <  1:15070374/35‑1 (MQ=255)
                                  cGCCATTGCAACAATGGCGCAATTCGGATGAAGcc  >  1:18481755/1‑35 (MQ=255)
                                  cGCCATTGCAACAATGGCGCAATTCGGATGAAGcc  <  1:918643/35‑1 (MQ=255)
                                  |                                  
AGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCC  >  REL606/4266625‑4266693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.