New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 866988 =115 (1.120)7 (0.090) 4/38 NT 9.9% coding (1206/2097 nt) yliE conserved inner membrane protein
?REL606 = 4527146 37 (0.450)coding (1137/2637 nt) fimD outer membrane usher protein, type 1 fimbrial synthesis

TTCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/867026‑866988
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcCGTAATGGAATAACGAGTATGCCCTTCACGTTGC  <  REL606/4527146‑4527113
                                                                         
TTCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCC                                        >  1:10375155/1‑35
TTCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCC                                        <  1:8430191/35‑1
 TCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCC                                       <  1:10678620/35‑1
 TCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCC                                       <  1:17674758/35‑1
 TCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCC                                       >  1:11376872/1‑35
 TCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCC                                       >  1:18313046/1‑35
 TCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCC                                       >  1:14040522/1‑35
 TCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCC                                       >  1:8732113/1‑35
  CAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCT                                      >  1:3480389/1‑35
  CAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCT                                      >  1:13015501/1‑35
  CAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCT                                      >  1:18878881/1‑35
  CAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCT                                      <  1:4792594/35‑1
  CAGTTTTTCTGCGTAACTCCAGGAGTTTTCCCCCT                                      <  1:13668757/35‑1
   AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTG                                     >  1:16209647/1‑35
   AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTG                                     >  1:19210057/1‑35
   AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTG                                     >  1:3788049/1‑35
   AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTG                                     <  1:11943644/35‑1
   AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTG                                     >  1:10837886/1‑35
   AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTG                                     >  1:4248945/1‑35
   AGTTTTTCTGCGTAACTCCAGGCGTTTTCCCACTG                                     <  1:4065655/35‑1
    GTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTGC                                    >  1:13550975/1‑35
    GTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTGC                                    >  1:2255973/1‑35
                       tGCGGTTTCCCCCTGCCGTAATGGAATAACGAGTA                 <  1:19759969/34‑1
                         cggTTTCCCCCTGCCGTAATGGAATAACGAGTATG               <  1:10834086/32‑1
                         CGTTTTCCCCCTGCCGTAATGGAATAACGAGTATG               <  1:1618834/35‑1
                          GTTTTCCCCCTGCCGTAATGGAATAACGAGTATGC              <  1:4959292/35‑1
                           TTTTCCCCCTGCCGTAATGGAATAACGAGTATGCC             <  1:5496709/35‑1
                           TTTTCCCCCTGCCGTAATGGAATAACGAGTATGCC             <  1:20153165/35‑1
                            ttcCCCCCTGCCGTAATGGAATAACGAGTATGCCC            <  1:18154511/32‑1
                            taTCCCCCTGCCGTAATGGAATAACGAGTATGCCC            <  1:576541/33‑1
                            TTTCCCCCTGCCGTAATGGAATAACGAGTATGCCC            <  1:4672696/35‑1
                             tttCCCCTGCCGTAATGGAATAACGAGTATGCCCT           <  1:19234664/32‑1
                              cCCCCCTGCCGTAATGGAATAACGAGTATGCCCTT          <  1:4844502/34‑1
                              TCCCCCTGCCGTAATGGAATAACGAGTATGCCCTT          <  1:5518317/35‑1
                              TCCCCCTGCCGTAATGGAATAACGAGTATGCCCTT          <  1:2506501/35‑1
                              TCCCCCTGCCGTAATGGAATAACGAGTATGCCCTT          <  1:206927/35‑1
                               CCCCCTGCCGTAATGGAATAACGAGTATGCCCTTC         <  1:245634/35‑1
                                CCCCTGCCGTAATGGAATAACGAGTATGCCCTTCA        <  1:9465678/35‑1
                                 CCCTGCCGTAATGGAATAACGAGTATGCCCTTCAC       <  1:20223483/35‑1
                                  CCTGCCGTAATGGAATAACGAGTATGCCCTTCACG      <  1:10344590/35‑1
                                  CCTGCCGTAATGGAATAACGAGTATGCCCTTCACG      >  1:15976117/1‑35
                                  CCTGCCGTAATGGAATAACGAGTATGCCCTTCACG      >  1:4463238/1‑35
                                  CCTGCCGTAATGGAATAACGAGTATGCCCTTCACG      >  1:17632237/1‑35
                                   CTGCCGTAATGGAATAACGAGTATGCCCTTCACGT     <  1:1679130/35‑1
                                   CTGCCGTAATGGAATAACGAGTATGCCCTTCACGT     <  1:16446058/35‑1
                                   CTGCCGTAATGGAATAACGAGTATGCCCTTCACGT     <  1:8903094/35‑1
                                   CTGCCGTAATGGAATAACGAGTATGCCCTTCACGT     <  1:3430276/35‑1
                                   CTGCCGTAATGGAATAACGAGTATGCCCTTCACGT     >  1:5149747/1‑35
                                   CTGCCGTAATGGAATAACGAGTATGCCCTTCACGT     >  1:1448704/1‑35
                                   CTGCCGTAATGGAATAACGAGTATGCCATTCACGT     <  1:14427023/35‑1
                                    nGCCGNAATGGAATAACGAGTATGCCCTTCACGTT    <  1:14466651/34‑1
                                    TGCCGTAATGGAATAACGAGTATGCCCTTCACGTT    <  1:2517770/35‑1
                                    TGCCGTAATGGAATAACGAGTATGCCCTTCACGTT    >  1:8009087/1‑35
                                     GCCGTAATGGAATAACGAGTATGCCCTTCACGTTG   <  1:8392629/35‑1
                                     GCCGTAATGGAATAACGAGTATGCCCTTCACGTTG   >  1:7207761/1‑35
                                     GCCGTAATGGAATAACGAGTATGCCCTTCACGTTG   >  1:1479734/1‑35
                                     GCCGTAATGGAATAACGAGTATGCCCTTCACGTTG   >  1:15411847/1‑35
                                     GCCGTAATGGAATAACGAGTATGCCCTTCACGTTG   >  1:17010600/1‑35
                                      CCGTAATGGAATAACGAGTATGCCCTTCACGTTGC  >  1:7451188/1‑35
                                      CCGTAATGGAATAACGAGTATGCCCTTCACGTTGC  >  1:8252483/1‑35
                                      CCGTAATGGAATAACGAGTATGCCCTTCACGTTGC  >  1:15692301/1‑35
                                      CCGTAATGGAATAACGAGTATGCCCTTCACGTTGC  >  1:16271018/1‑35
                                      CCGTAATGGAATAACGAGTATGCCCTTCACGTTGC  >  1:4685235/1‑35
                                      CCGTAATGGAATAACGAGTATGCCCTTCACGTTGC  >  1:16379631/1‑35
                                                                         
TTCAGTTTTTCTGCGTAACTCCAGGCGTTTTCCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/867026‑866988
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcCGTAATGGAATAACGAGTATGCCCTTCACGTTGC  <  REL606/4527146‑4527113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.