New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 121335336 (0.350)4 (0.060) 3/30 NT 9.5% intergenic (‑85/+136) ycgX/ycgE hypothetical protein/predicted DNA‑binding transcriptional regulator
?REL606 = 4512602 54 (0.840)coding (720/747 nt) yjhP predicted methyltransferase

CACGATCGGTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1213311‑1213353
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttggctgGGGCGTGTTCGCACTCATCGCCCGGTAACAACAG  <  REL606/4512602‑4512569
                                                                             
CACGATCGGTTTTACCACTTCAATCTGGTCTGTCC                                            <  1:7667034/35‑1
 ACGATCGGTTTTACCACTTCAATCTGGTCTGTCCT                                           >  1:1454742/1‑35
 ACGATCGGTTTTACCACTTCAATCTGGTCTGTCCT                                           <  1:12723328/35‑1
  CGATCGGTTTTACCACTTCAATCTGGTCTGTCCTT                                          >  1:381434/1‑35
  CGATCGGTTTTACCACTTCAATCTGGTCTGTCCTT                                          <  1:14749721/35‑1
   GATCGGTTTTACCACTTCAATCTGGTCTGTCCTTT                                         >  1:10618731/1‑35
   GATCGGTTTTACCACTTCAATCTGGTCTGTCCTTT                                         >  1:5583566/1‑35
   GATCGGTTTTACCACTTCAATCTGGTCTGTCCTTT                                         >  1:6721627/1‑35
    ATCGGTTTTACCACTTCAATCTGGTCTGTCCTTTG                                        >  1:11578791/1‑35
      CGGTTTTACCACTTCAATCTGGTCTGTCCTTTGGC                                      >  1:18090540/1‑35
       GGTTTTACCACTTCAATCTGGTCTGTCCTTTGGCT                                     >  1:3728182/1‑35
        GTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTG                                    >  1:9945535/1‑35
        GTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTG                                    <  1:11696163/35‑1
        GTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTG                                    <  1:9450839/35‑1
        GTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTG                                    >  1:4142191/1‑35
        GTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTG                                    >  1:18732431/1‑35
        GTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTG                                    <  1:17006481/35‑1
         TTTTACCACTTCAATCTGGTCTGTCCTTTGGCTGG                                   >  1:9040781/1‑35
         TTTTACCACTTCAATCTGGTCTGTCCTTTGGCTGG                                   >  1:17512850/1‑35
          TTTACCACTTCAATCTGGTCTGTCCTTTGGCTGGG                                  >  1:18101977/1‑35
          TTTACCACTTCAATCTGGTCTGTCCTTTGGCTGGG                                  >  1:8317961/1‑35
          TTTACCACTTCAATCTGGTCTGTCCTTTGGCTGGG                                  >  1:2719290/1‑35
           TTACCACTTCAATCTGGTCTGTCCTTTGGCTGGGG                                 >  1:12367271/1‑35
            TACCACTTCAATCTGGTCTGTCCTTTGGCTGGGGg                                >  1:3003153/1‑34
            TACCACTTCAATCTGGTCTGTCCTTTGGCTGGGGg                                >  1:16285893/1‑34
             ACCACTTCAATCTGGTCTGTCCTTTGGCTGGGGgg                               >  1:10282912/1‑33
             ACCACTTCAATCTGGTCTGTCCTTTGGCTGGGGgg                               >  1:13666154/1‑33
              CCACTTCAATCTGGTCTGTCCTTTGGCTGGGGggg                              >  1:4211252/1‑32
              CCACTTCAATCTGGTCTGTCCTTTGGCTGGGGGGT                              >  1:16098677/1‑35
               CACTTCAATCTGGTCTGTCCTTTGGCTGGGGGGTG                             >  1:1996850/1‑35
                ACTTCAATCTGGTCTGTCCTTTGGCTGGGGGGTGg                            >  1:10349426/1‑34
                 CTTCAATCTGGTCTGTCCTTTGGCTGGGGGGTGTT                           >  1:32446/1‑35
                                  CTTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGT          <  1:1856579/35‑1
                                  CTTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGT          >  1:17150137/1‑35
                                   TTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTA         <  1:3006353/35‑1
                                   TTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTA         >  1:15825540/1‑35
                                   TTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTA         <  1:12618953/35‑1
                                   TTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTA         >  1:13897757/1‑35
                                   TTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTA         >  1:16371884/1‑35
                                   TTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTA         <  1:5199706/35‑1
                                   TTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTA         >  1:2490115/1‑35
                                    TTGGCTGGTGCGTGTTCGCACTCATCGCCCGGTAA        >  1:16783554/1‑35
                                    TTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAA        <  1:3146775/35‑1
                                    TTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAA        >  1:20471189/1‑35
                                    TTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAA        <  1:17492339/35‑1
                                    TTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAA        <  1:17531671/35‑1
                                    TTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAA        <  1:7824901/35‑1
                                     TGGCTGGGGCGTGTTCGCACTCATTGCCCGGTAAC       <  1:5099512/35‑1
                                     TGGCTGGGGCGTGTTCGCACTCATCGCCCGGTGAC       <  1:11084962/35‑1
                                     TGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAAC       <  1:20544471/35‑1
                                     TGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAAC       <  1:5131829/35‑1
                                     TGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAAC       <  1:4515790/35‑1
                                      GGCTGGGGCGTGTTCGCACTCATCGCCCGGTAACA      <  1:5985667/35‑1
                                      GGCTGGGGCGTGTTCGCACTCATCGCCCGGTAACA      >  1:2235557/1‑35
                                      GGCTGGGGCGTGTTCGCACTCATCGCCCGGTAACA      >  1:17552912/1‑35
                                      GGCTGGGGCGTGTTCGCACTCATCGCCCGGTAACA      >  1:15340886/1‑35
                                       ctTGGGGCGTGTTCGCACTCATCGCCCGGTAACAA     <  1:17040178/33‑1
                                       ctTGGGGCGTGTTCGCACTCATCGCCCGGTAACAA     <  1:17569471/33‑1
                                       GCTGGGGCGTGTTCGCACTCATCGCCCGGTAACAA     <  1:5579130/35‑1
                                       GCTGGGGCGTGTTCGCACTCATCGCCCGGTAACAA     <  1:741177/35‑1
                                       GCTGGGGCGTGTTCGCACTCATCGCCCGGTAACAA     <  1:8188745/35‑1
                                       GCTGGGGCGTGTTCGCACTCATCGCCCGGCAACAA     >  1:5145869/1‑35
                                        CTGGGGCGTGTTCGCACTCATCGCCCGGTAACAAC    <  1:10248730/35‑1
                                        CTGGGGCGTGTTCGCACTCATCGCCCGGTAACAAC    >  1:5714748/1‑35
                                        CTGGGGCGTGTTCGCACTCATCGCCCGGTAACAAC    >  1:2667439/1‑35
                                        CTGGGGCGTGTTCGCACTCATCGCCCGGTAACAAC    >  1:959803/1‑35
                                        CTGGGGCGTGTTCGCACTCATCGCCCGGTAACAAC    <  1:10387968/35‑1
                                         TGGGGCGTGTTCGCACTCATCGCCCGGTAACAACA   <  1:9915432/35‑1
                                         TGGGGCGTGTTCGCACTCATCGCCCGGTAACAACA   >  1:5432708/1‑35
                                         TGGGGCGTGTTCGCACTCATCGCCCGGTAACAACA   <  1:17947690/35‑1
                                          GGGGCGTGTTCGCACTCATCGCCCGGTAACAACAG  >  1:17972211/1‑35
                                          GGGGCGTGTTCGCACTCATCGCCCGGTAACAACAG  >  1:7700004/1‑35
                                          GGGGCGTGTTCGCACTCATCGCCCGGTAACAACAG  <  1:11242715/35‑1
                                          GGGGCGTGTTCGCACTCATCGCCCGGTAACAACAG  >  1:18204880/1‑35
                                          GGGGCGTGTTCGCACTCATCGCCCGGTAACAACAG  <  1:3451034/35‑1
                                          GGGGCGTGTTCGCACTCATCGCCCGGTAACAACAG  >  1:15583823/1‑35
                                                                             
CACGATCGGTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1213311‑1213353
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttggctgGGGCGTGTTCGCACTCATCGCCCGGTAACAACAG  <  REL606/4512602‑4512569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.