New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 66468767 (0.650)34 (0.380) 20/42 NT 39.4% intergenic (‑78/‑48) gltL/insJ‑2 ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein
?REL606 666134 = 46 (0.510)pseudogene (354/387 nt) gltL ATP‑binding protein of glutamate/aspartate transport system; b0652_2

Only 100 of 125 total aligned reads displayed.

TTAACTGTCCAACTTTTTGGGGTCAGTACATTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTT  >  REL606/666101‑666168
                                  |                                  
ttAACTGTCCAACTTTTTGGTGTCAGTACATTTCa                                   >  1:2745646/1‑35 (MQ=255)
ttAACTGTCCAACTTTTTGGGGTCAGTACATTTcg                                   >  1:17977660/1‑34 (MQ=255)
ttAACTGTCCAACTTTTTGGGGTCAGTACATTTCa                                   >  1:6292258/1‑35 (MQ=255)
 tAACTGTCCAACTTTTTGGGGTCAGTACATTTCAg                                  <  1:6953889/35‑1 (MQ=255)
 tAACTGTACAACTTTTTGGGGTCAGTACATTTCAg                                  <  1:7191247/35‑1 (MQ=255)
  tgagcagaaagcccgacacgctccagcagtttCAg                                  <  1:4240718‑M2/3‑1 (MQ=255)
  aaCTGTCCAACTTTTTGGGGTCAGTACATTTCAgg                                 >  1:10974702/1‑35 (MQ=255)
   gagcagaaagcccgacacgctccagcagtttCAgg                                 >  1:13700005‑M2/32‑35 (MQ=255)
   gagcagaaagcccgacacgctccagcagtttCAgg                                 >  1:7643158‑M2/32‑35 (MQ=255)
   aCTGTCCAACTTTTTGGGGTCAGTACATTTCAggg                                >  1:2794403/1‑35 (MQ=255)
   aCTGTCCAACTTTTTGGGGTCAGTACATTTCAggg                                <  1:14159931/35‑1 (MQ=255)
   aCTGTCCAACTTTTTGGGGTCAGTACATTTCAggg                                <  1:2304427/35‑1 (MQ=255)
   aCTGTCCAACTTTTTGGGGTCAGTACAATCCAggg                                <  1:2435937/35‑1 (MQ=11)
    cTGTCCAACTTTTTGGGGTCAGTACATTTCAGGGc                               >  1:2896254/1‑35 (MQ=255)
    cTGTCCAACTTTTTGGGGTCAGTACATTTCAGGGc                               >  1:13239558/1‑35 (MQ=255)
    cTGTCCAACTTTTTGGGGTCAGTACAATCCAGGGc                               >  1:12173974/1‑35 (MQ=11)
    agcagaaagcccgacacgctccagcagtttCAggg                                >  1:7444281‑M2/31‑35 (MQ=255)
    agcagaaagcccgacacgctccagcagtttCAggg                                >  1:11672344‑M2/31‑35 (MQ=255)
    agcagaaagcccgacacgctccagcagtttCAggg                                >  1:8034156‑M2/31‑35 (MQ=255)
    agcagaaagcccgacacgctccagcagtttCAggg                                <  1:11056321‑M2/5‑1 (MQ=255)
    agcagaaagcccgacacgctccagcagtttCAggg                                >  1:8894899‑M2/31‑35 (MQ=255)
     tGTCCAACTTTTTGGGGTCAGTACATTTCAGGGCt                              >  1:19145898/1‑35 (MQ=255)
     tGTCCAACTTTTTGGGGTCAGTACATTTCAGGGCt                              >  1:18819481/1‑35 (MQ=255)
     tGTCCAACTTTTTGGGGTCAGTACATTTCAGGGCt                              >  1:3487247/1‑35 (MQ=255)
     tGTCCAACTTTTTGGGGTCAGTACAATCCAGGGCt                              >  1:16227253/1‑35 (MQ=14)
     gcagaaagcccgacacgctccagcagtttCAGGGc                               <  1:1798987‑M2/6‑1 (MQ=255)
      gTCCAACTTTTTGGGGTCAGTACATTTCAGGGCtt                             >  1:20274748/1‑35 (MQ=255)
      cagaaagcccgacacgctccagcagtttCAGGGCt                              >  1:15354950‑M2/29‑35 (MQ=255)
      cagaaagcccgacacgctccagcagtttCAGGGCt                              >  1:17604265‑M2/29‑35 (MQ=255)
      cagaaagcccgacacgctccagcagtttCAGGGCt                              >  1:8904595‑M2/29‑35 (MQ=255)
       agaaagcccgacacgctccagcagtttCAGGGCtt                             >  1:3326065‑M2/28‑35 (MQ=255)
        gaaagcccgacacgctccagcagtttCAGGGCttt                            <  1:18055978‑M2/9‑1 (MQ=255)
        ccAACTTTTTGGGGTCAGTACATTTCAGGGCtttt                           >  1:15357225/1‑35 (MQ=255)
         cAACTTTTTGGGGTCAGTACATTTCAGGGCttttt                          <  1:7000530/35‑1 (MQ=255)
         aaagcccgacacgctccagcagtttCAGGGCtttt                           >  1:3194309‑M2/26‑35 (MQ=255)
         aaagcccgacacgctccagcagtttCAGGGCtttt                           <  1:1033279‑M2/10‑1 (MQ=255)
         aaagcccgacacgctccagcagtttCAGGGCtttt                           <  1:4141127‑M2/10‑1 (MQ=255)
          aagcccgacacgctccagcagtttCAGGGCttttt                          <  1:4286815‑M2/11‑1 (MQ=255)
          aaCTTTTTGGGGTCAGTACAACTTCGGGGCttttc                          >  1:18506961/1‑34 (MQ=0)
          aaCTTTTTGGGGTCAGTACATTTCAGGGCTTTTTc                         <  1:12886781/35‑1 (MQ=255)
          aaCTTTTTGGGGTCAGTACATTTCAGGGCTTTTTc                         <  1:6421696/35‑1 (MQ=255)
          aaCTTTTTGGGGTCAGTACATTTCAGGGCTTTTTc                         >  1:16609813/1‑35 (MQ=255)
           agcccgacacgctccagcagtttCAGTGCTTTTTc                         >  1:16567051‑M2/24‑35 (MQ=255)
           agcccgacacgctccagcagtttCAGGGCTTTTTc                         >  1:2946758‑M2/24‑35 (MQ=255)
           agcccgacacgctccagcagtttCAGGGCTTTTTc                         <  1:14146082‑M2/12‑1 (MQ=255)
           agcccgacacgctccagcagtttCAGGGCTTTTTc                         >  1:16035788‑M2/24‑35 (MQ=255)
             tttttGGGGTCAGTACATTTCAGGGCTTTTTCACg                      <  1:1032592/35‑1 (MQ=255)
             tttttGGGGTCAGTACATTTCAGGGCTTTTTCACg                      <  1:8881663/35‑1 (MQ=255)
             tttttGGGGTCAGTACATTTCAGGGCTTTTTCACg                      >  1:14646941/1‑35 (MQ=255)
              tcttGGGGTCAGTACATTTCAGGGCTTTTTCACGa                     <  1:59424/33‑1 (MQ=255)
              ccgacacgctccagcagtttCAGGGCTTTTTCACg                      <  1:12566898‑M2/15‑1 (MQ=255)
              ccgacacgctccagaagtttCAGGGCTTTTTCACg                      <  1:6107851‑M2/15‑1 (MQ=255)
              cagacacgctccagcagtttCAGGGCTTTTTCACg                      <  1:17729976‑M2/15‑1 (MQ=255)
               tttGGGGTCAGTACATTTCAGGGCTTTTTCACGAg                    >  1:2310492/1‑35 (MQ=255)
               tttGGGGTCAGTACATTTCAGGGCTTTTTCACGAg                    <  1:5393534/35‑1 (MQ=255)
               tttGGGGTCAGTACATTTCAGGGCTTTTTCACGAg                    <  1:17692511/35‑1 (MQ=255)
               tttGGGGTCAGTACATTTCAGGGCTTTTTCACGAg                    >  1:6581808/1‑35 (MQ=255)
               cgacacgctccagcagtttCAGGGCTTTTTCACGa                     >  1:12694022‑M2/20‑35 (MQ=255)
               cgacacgctccagcagtttCAGGGCTTTTTCACGa                     >  1:10531586‑M2/20‑35 (MQ=255)
                ttGGGGTCAGTACATTTCAGGGCTTTTTCACGAGc                   >  1:5323053/1‑35 (MQ=255)
                ttGGGGTCAGTACATTTCAGGGCTTTTTCACGAGc                   <  1:13494482/35‑1 (MQ=255)
                gacacgctccagcagtttCAGGGCTTTTTCACGAg                    <  1:12512290‑M2/17‑1 (MQ=255)
                 tGGGGTCAGTACATTTCAGGGCTTTTTCACGAGcc                  >  1:8607355/1‑35 (MQ=255)
                  cacgctccagcagtttCAGGGCTTTTTCACGAGcc                  <  1:16521062‑M2/19‑1 (MQ=255)
                  cacgctccagcagtttCAGGGCTTTTTCACGAGcc                  >  1:3986679‑M2/17‑35 (MQ=255)
                   gggTCAGTACATTTCAGGGCTTTTTCACGAGCCgg                <  1:6969402/35‑1 (MQ=255)
                   gggTCAGTACATTTCAGGGCTTTTTCACGAGCCgg                <  1:19255583/35‑1 (MQ=255)
                   gggTCAGTACATTTAAGGGCTTTTTCACGAGCCgg                <  1:11595856/35‑1 (MQ=255)
                   acgctccagcagtttCAGGGCTTTTTCACGAGCCg                 >  1:7894340‑M2/16‑35 (MQ=255)
                    ggTCAGTACATTTCAGGGCTTTTTCACGAGCCGgc               >  1:11910738/1‑35 (MQ=255)
                    cgctccagcagtttCAGGGCTTTTTCACGAGCCgg                <  1:15239560‑M2/21‑1 (MQ=255)
                     gTCAGTACATTTCAGGGTTTTTTCACGAGCCGgcg              <  1:13384539/35‑1 (MQ=255)
                     gTCAGTACATTTCAGGGCTTTTTCACGAGCCGgcg              >  1:4135610/1‑35 (MQ=255)
                      tCAGTACATTTCAGGGCTTTTTCACGAGCCGgcgc             <  1:12229038/35‑1 (MQ=255)
                      tCAGTACATTTCAGGGCTTTTTCACGAGCCGgcgc             >  1:882691/1‑35 (MQ=255)
                      tCAGTACATTTCAGGGCTTTTTCACGAGCCGgcgc             >  1:19570185/1‑35 (MQ=255)
                      tCAGTACATTTCAGGGCTTTTTCACGAGCCGgcgc             >  1:10697752/1‑35 (MQ=255)
                      ctccagcagtttCAGGGCTTTTTCACGAGCCGgcg              >  1:15729134‑M2/13‑35 (MQ=255)
                       cAGTACATTTCAGGGCTTTTTCACGAGCCGGCGCt            >  1:17727729/1‑35 (MQ=255)
                        ccagcagtttCAGGGCTTTTTCACGAGCCGGCGCt            >  1:2621667‑M2/11‑35 (MQ=255)
                        aGTACATTTCAGGGCTTTTTCACGAGCCGGCGCtt           >  1:20283801/1‑35 (MQ=255)
                         cagcagtttCAGGGCTTTTTCACGAGCCGGCGCtt           >  1:19839372‑M2/10‑35 (MQ=255)
                            cagtttCAGGGCTTTTTCACGAGCCGGCGCTTTAt        >  1:7357921‑M2/7‑35 (MQ=255)
                              aTTTCAGGGTTTTTTCGCGAGCCGGCGCTTTATcg      <  1:15646362/35‑1 (MQ=38)
                              aTTTCAGGGCTTTTTCACGAGCCGGCGCTTTATcg      >  1:10494273/1‑35 (MQ=255)
                              aTTTCAGGGCTTTTTCACGAGCCGGCGCTTTATcg      <  1:4457560/35‑1 (MQ=255)
                              aTTTCAGGGCTTTTTCACGAGCCGGCGCTTTATcg      <  1:8097324/35‑1 (MQ=255)
                               tttCAGGGTTTTTTCACGAGCCGGCGCTTTATcgc     <  1:16753271‑M2/32‑1 (MQ=255)
                               tttCAGGGCTTTTTCACGAGCCGGCGCTTTATcgc     <  1:12286736‑M2/32‑1 (MQ=255)
                               tttCAGGGCTTTTTCACGAGCCGGCGCTTTATcgc     >  1:2869030‑M2/4‑35 (MQ=255)
                                ttCGGGGCTCTTTCAGGAGCCGGCGCTTTATcgcg    <  1:6771974/35‑1 (MQ=25)
                                ttCAGGGCTTTTTCACGAGCCGGCGCTTTATcgcn    <  1:6527019‑M2/33‑1 (MQ=255)
                                 tCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGt   >  1:11408631‑M2/2‑35 (MQ=255)
                                  cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt  >  1:10554384/1‑35 (MQ=255)
                                  cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt  >  1:10109771/1‑35 (MQ=255)
                                  cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt  >  1:7770161/1‑35 (MQ=255)
                                  cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt  >  1:12731524/1‑35 (MQ=255)
                                  cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt  <  1:679172/35‑1 (MQ=255)
                                  cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt  <  1:14390051/35‑1 (MQ=255)
                                  cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt  <  1:4444949/35‑1 (MQ=255)
                                  |                                  
TTAACTGTCCAACTTTTTGGGGTCAGTACATTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTT  >  REL606/666101‑666168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.