New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3302668 =53 (0.520)10 (0.120) 6/38 NT 13.9% intergenic (‑281/‑99) nanR/dcuD transcriptional regulator NanR/predicted transporter
?REL606 4085857 = 82 (1.010)intergenic (+55/‑94) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F

Only 100 of 106 total aligned reads displayed.

ATGAAAAATCACCTCATCCACAATTAAAAACACGACATCCGCACCATAAATAGCCTTGCAAAAAATATA  >  REL606/3302634‑3302702
                                  |                                  
aTGAAAAATCACCTCATCCACAATTAAAAACACGa                                    >  1:16800439/1‑35 (MQ=255)
 tGAAAAATCACCTCATCCACAATTAAAAACACGAc                                   >  1:4148741/1‑35 (MQ=255)
 tGAAAAATCACCTCATCCACAATTAAAAACACGAc                                   >  1:3298827/1‑35 (MQ=255)
  gAAAAATCACCTCATCCACAATTAAAAACACGACa                                  >  1:6689251/1‑35 (MQ=255)
  cagcaggcaaattgaggataaaaaaaacccccaca                                  <  1:4533417‑M1/3‑1 (MQ=255)
  cagcaggcaaattgaggataaaaaaaacccccaca                                  <  1:13485924‑M1/3‑1 (MQ=255)
  cagcaggcaaattgaggataaaaaaaacccccaca                                  <  1:2950009‑M1/3‑1 (MQ=255)
  cagcaggcaaattgaggataaaaaaaacccccaca                                  <  1:3869425‑M1/3‑1 (MQ=255)
   agcaggcaaattgaggataaaaaaaacccccACAt                                 <  1:1324511‑M1/4‑1 (MQ=255)
   agcaggcaaattgaggataaaaaaaacccccACAt                                 <  1:12547096‑M1/4‑1 (MQ=255)
   agcaggcaaattgaggataaaaaaaacccccACAt                                 >  1:16199613‑M1/32‑35 (MQ=255)
   agcaggcaaattgaggataaaaaaaacccccACAt                                 >  1:16222793‑M1/32‑35 (MQ=255)
   agcaggcaaattgaggataaaaaaaacccccACAt                                 >  1:17105610‑M1/32‑35 (MQ=255)
   agcaggcaaattgaggataaaaaaaacccccACAt                                 >  1:17996687‑M1/32‑35 (MQ=255)
   aaaaaTCACCTCATCCACAATTAAAAACACTACAt                                 >  1:18896819/1‑35 (MQ=255)
   aaaaaTCACCTCATCCACAATTAAAAACACGACAt                                 >  1:5034207/1‑35 (MQ=255)
    gcaggcaaattgaggataaaaaaaacccccACATc                                <  1:6947271‑M1/5‑1 (MQ=255)
    gcaggcaaattgaggataaaaaaaacccccACATc                                <  1:3415638‑M1/5‑1 (MQ=255)
    gcaggcaaattgaggataaaaaaaacccccACATc                                <  1:16715921‑M1/5‑1 (MQ=255)
    gcaggcaaattgaggataaaaaaaacccccACATc                                <  1:19061586‑M1/5‑1 (MQ=255)
    gcaggcaaattgaggataaaaaaaacccccACATc                                <  1:5767242‑M1/5‑1 (MQ=255)
    aaaaTCCCCTCATCCACAATTAAAAACACGACATc                                <  1:10008626/35‑1 (MQ=255)
    aaaaTCACCTCATCCACAATTAAAAACACGACATc                                >  1:19207394/1‑35 (MQ=255)
    aaaaTCACCTCATCCACAATTAAAAACACGACATc                                >  1:8305820/1‑35 (MQ=255)
    aaaaTCACCTCATCCACAATTAAAAACACGACATc                                <  1:12063405/35‑1 (MQ=255)
    aaaaTCACCTCATCCACAATTAAAAACACGACATc                                >  1:6645457/1‑35 (MQ=255)
     aaaTCCCCTCATCCACAATTAAAAACACGACATcc                               <  1:10948265/35‑1 (MQ=255)
     aaaTCACCTCATCCACAATTAAAAACACGACATcc                               >  1:9073169/1‑35 (MQ=255)
      aaTCACCTCATCCACAATTAAAAACACGACATCCg                              >  1:18443864/1‑35 (MQ=255)
      aaTCACCTCATCCACAATTAAAAACACGACATCCg                              >  1:12815515/1‑35 (MQ=255)
      aaTCACCTCATCCACAATTAAAAACACGACATCCg                              >  1:13935792/1‑35 (MQ=255)
       aTCACCTCATCCACAATTAAAAACACGACATCCGc                             >  1:4343870/1‑35 (MQ=255)
        tCACATCATCCACAATTAAAAACACGACATACGCa                            <  1:15449786/35‑1 (MQ=37)
         cACCTCATCCACAATTAAAAACACGACATCCGCAc                           >  1:15921188/1‑35 (MQ=255)
         cACCTCATCCACAATTAAAAACACGACATCCGCAc                           >  1:15445023/1‑35 (MQ=255)
          aCCTCATCCACAATTAAAAACACGACATCCGCAcc                          >  1:812258/1‑35 (MQ=255)
          aCCTCATCCACAATTAAAAACACGACATCCGCAcc                          >  1:6213880/1‑35 (MQ=255)
           ccTCATCCACAATTAAAAACACGTCATCCGCACCa                         <  1:5997292/35‑1 (MQ=255)
            cTCATCCACAATTAAAAACACGACATCCGCACCAt                        >  1:734395/1‑35 (MQ=255)
            cTCATCCACAATTAAAAACACGACATCCGCACCAt                        >  1:31264/1‑35 (MQ=255)
             tCATCCACAATTAAAAACACGACATCCGCACCATa                       >  1:11574053/1‑35 (MQ=255)
             tCATCCACAATTAAAAACACGACATCCGCACCATa                       >  1:19304919/1‑35 (MQ=255)
             tCATCCACAATTAAAAACACGACATCCGCACCATa                       >  1:9371613/1‑35 (MQ=255)
              cATCCGCAATTAAAAACACGACATCCGCACCATaa                      >  1:20348998/1‑35 (MQ=255)
               aTCCACAATTAAAAACACGACATCCGCACCATaaa                     >  1:8789846/1‑35 (MQ=255)
               aTCCACAATTAAAAACACGACATCCGCACCATaaa                     >  1:13871259/1‑35 (MQ=255)
                 ccACAATTAAAAACACGACATCCGCACCATAAATa                   >  1:14279209/1‑35 (MQ=255)
                 ccACAATTAAAAACACGACATCCGCACCATAAATa                   >  1:15908997/1‑35 (MQ=255)
                 ccACAATTAAAAACACGACATCCGCACCATAAATa                   >  1:1713344/1‑35 (MQ=255)
                  cacaATAAAAAACACGACATCCGCACCATAAATAg                  >  1:9632319/1‑35 (MQ=255)
                  cacaAAAAAAAACCCCCCATCCGCACCATAAATAg                  <  1:1078977/35‑1 (MQ=16)
                   acaATTAAAAACACGACATCCGCACCATAAATAGc                 >  1:6069082/1‑35 (MQ=255)
                   acaATTAAAAACACGACATCCGCACCATAAATAGc                 >  1:14146675/1‑35 (MQ=255)
                   acaATTAAAAACACGACATCCGCACCATAAATAGc                 >  1:18682796/1‑35 (MQ=255)
                   acaATTAAAAACACGACATCCGCACCATAAATAGc                 >  1:15030003/1‑35 (MQ=255)
                   acaATTAAAAACACGACATCCGCACCATAAATAGc                 >  1:6893485/1‑35 (MQ=255)
                    caATTAAAAACACGACATCCGCACCATAAATAGcc                >  1:9154686/1‑35 (MQ=255)
                    aaaaaaaaacccccCCATCCGCACCATAAATAGcc                >  1:5677434‑M1/15‑35 (MQ=255)
                     aaaaaaaacccccCCATCCGCACCATAAATAGCCt               >  1:2737138‑M1/14‑35 (MQ=255)
                     aaaaaaaacccccCCATCCGCACCATAAATAGCCt               >  1:11547924‑M1/14‑35 (MQ=255)
                      aTTAAAAACACGACATCCGCACCATAAATAGCCtt              >  1:2284558/1‑35 (MQ=255)
                      aTTAAAAACACGACATCCGCACCATAAATAGCCtt              >  1:17415395/1‑35 (MQ=255)
                       ttAAAAACACGACATCCGCACCATAAATAGCCTTg             >  1:18947040/1‑35 (MQ=255)
                       aaaaaacccccCCATCCGCACCATAAATAGCCTTg             >  1:5210829‑M1/12‑35 (MQ=255)
                       aaaaaacccccCCATCCGCACCATAAATAGCCTTg             >  1:20613145‑M1/12‑35 (MQ=255)
                       aaaaaacccccCCATCCGCACCATAAATAGCCTTg             >  1:13132634‑M1/12‑35 (MQ=255)
                        tAAAAACACGACATCCGCACCATAAATAGCCTTGc            >  1:10992957/1‑35 (MQ=255)
                        tAAAAACACGACATCCGCACCATAAATAGCCTTGc            >  1:12873292/1‑35 (MQ=255)
                         aaaaaCACGACATCCGCACCATAAATAGCCTTGCa           >  1:10208254/1‑35 (MQ=255)
                         aaaaaCACGACATCCGCACCATAAATAGCCTTGCa           >  1:2437794/1‑35 (MQ=255)
                         aaaaaCACGACATCCGCACCATAAATAGCCTTGCa           >  1:4345308/1‑35 (MQ=255)
                          aaacccccCCATCCGCACCATAAATAGCCTTGCaa          >  1:3771449‑M1/9‑35 (MQ=255)
                          aaaaCACGACATCCGCACCATAAATAGCCTTGCaa          >  1:9358799/1‑35 (MQ=255)
                           aacccccCCATCCGCACCATAAATAGCCTTGCaaa         >  1:2259307‑M1/8‑35 (MQ=255)
                           aaaCACGACATCCGCACCATAAATAGCCTTGCaaa         >  1:13549796/1‑35 (MQ=255)
                           aaaCACGACATCCGCACCATAAATAGCCTTGCaaa         >  1:15687821/1‑35 (MQ=255)
                           aaaCACGACATCCGCACCATAAATAGCCTTGCaaa         >  1:2857288/1‑35 (MQ=255)
                            acccccCCATCCGCACCATAAATAGCCTTGCaaaa        >  1:5708165‑M1/7‑35 (MQ=255)
                            aaCACGACATCCGCACCATAAATAGCCTTGCaaaa        >  1:12531523/1‑35 (MQ=255)
                            aaCACGACATCCGCACCATAAATAGCCTTGCaaaa        >  1:1190520/1‑35 (MQ=255)
                            aaCACGACATCCGCACCATAAATAGCCTTGCaaaa        >  1:7727696/1‑35 (MQ=255)
                            aaCACGACATCCGCACCATAAATAGCCTTGCaaaa        >  1:18693800/1‑35 (MQ=255)
                            aaCACGACATCCGCACCATAAATAGCCTTGCaaaa        >  1:2558627/1‑35 (MQ=255)
                            aaCACGACATCCGCACCATAAATAGCCTTGCaaaa        >  1:3725816/1‑35 (MQ=255)
                             cccccCCATCCGCACCATAAATAGCCTTGCaaaaa       >  1:2863045‑M1/6‑35 (MQ=255)
                             cccccCCATCCGCACCATAAATAGCCTTGCaaaaa       >  1:18528155‑M1/6‑35 (MQ=255)
                             acacGACATCCGCACCATAAATAGCCTTGCaaaaa       >  1:3365059/1‑35 (MQ=255)
                              ccccCCATCCGCACCATAAATAGCCTTGCaaaaaa      >  1:13559921‑M1/5‑35 (MQ=255)
                              cacGACATCCGCACCATAAATAGCCTTGCaaaaaa      >  1:3301231/1‑35 (MQ=255)
                              cacGACATCCGCACCATAAATAGCCTTGCaaaaaa      >  1:10383504/1‑35 (MQ=255)
                              cacGACATCCGCACCATAAATAGCCTTGCaaaaaa      >  1:18945145/1‑35 (MQ=255)
                              cacGACATCCGCACCATAAATAGCCTTGCaaaaaa      >  1:2701931/1‑35 (MQ=255)
                               acGACATCCGCACCATAAATAGCCTTGCAAAAAat     >  1:18659274/1‑35 (MQ=255)
                               acGACATCCGCACCATAAATAGCCTTGCAAAAAat     >  1:3161321/1‑35 (MQ=255)
                               acGACATCCGCACCATAAATAGCCTTGCAAAAAat     >  1:3102354/1‑35 (MQ=255)
                                cGACATCCGCACCATAAATAGCCTTGCAAAAAata    >  1:687592/1‑35 (MQ=255)
                                cGACATCCGCACCATAAATAGCCTTGCAAAAAata    >  1:18150901/1‑35 (MQ=255)
                                 gACATCCGCACCATAAATAGCCTTGCAAAAAatat   >  1:10232779/1‑35 (MQ=255)
                                 gACATCCGCACCATAAATAGCCTTGCAAAAAatat   >  1:3675853/1‑35 (MQ=255)
                                  ACATCCGCACCATAAATAGCCTTGCAAAAAAtata  <  1:7115686‑M1/35‑1 (MQ=255)
                                  |                                  
ATGAAAAATCACCTCATCCACAATTAAAAACACGACATCCGCACCATAAATAGCCTTGCAAAAAATATA  >  REL606/3302634‑3302702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.