Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,648,342 | IS1 (–) +9 bp | 28.2% | intergenic (+195/‑221) | ynfM → / → asr | predicted transporter/acid shock protein precursor |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1323488 | NA (NA) | 22 (0.210) | 18/48 | NT | 26.6% | noncoding (768/768 nt) | IS1 | repeat region |
? | REL606 | = 1648350 | 38 (0.590) | intergenic (+203/‑221) | ynfM/asr | predicted transporter/acid shock protein precursor | |||||
* | ? | REL606 | 1648342 = | 36 (0.600) | 7 (0.090) | 6/36 | NT | 13.1% | intergenic (+195/‑229) | ynfM/asr | predicted transporter/acid shock protein precursor |
? | REL606 | = 3024712 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
Only 100 of 306 total aligned reads displayed.
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGCTTCCTGAAGTAATTTTTCTGCGATAAAAAGA > REL606/3024678‑3024746 | ctcataCACTAAATCAGTAAGTTGGCANCATCACC > 1:14466829‑M2/2‑35 (MQ=255) atcatACACTAAATCAGTAAGTTTGCAGCATCACC < 1:11758890‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCATCATCACC < 1:3139132‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:7041429‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:6854881‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:16488565‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:16510653‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:16674425‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:17072188‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:6293440‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:5908226‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:5747701‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:18554717‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:18738341‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:18882545‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:1915157‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:19241853‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:5433932‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:19610832‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:5165118‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:19910203‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:4723997‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:20256986‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:2253689‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:4254733‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:399230‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:3309158‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:2973022‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:974040‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:10235085‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:9460107‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:8697280‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:12475848‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:8338587‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:12922504‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:13265843‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:14097270‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:7825971‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:15824632‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:15413460‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:15156754‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC > 1:14865717‑M2/1‑35 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACC < 1:14588548‑M2/35‑1 (MQ=255) atcatACACTAAATCAGTAAATTGGCAGCATCACC > 1:10274330‑M2/1‑35 (MQ=255) atcatACACTAAATAAGTAAGTTGGCAGCATCACC > 1:9525093‑M2/1‑35 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACCcg > 1:13823059‑M2/1‑33 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACCcg > 1:15640196‑M2/1‑33 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACCcg > 1:2547670‑M2/1‑33 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACCcg > 1:18219344‑M2/1‑33 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACCcg < 1:16251464‑M2/35‑3 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACCcg > 1:1114706‑M2/1‑33 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACCcg > 1:9044434‑M2/1‑33 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCcgc > 1:12380815‑M2/1‑32 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCcgc > 1:4352692‑M2/1‑32 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCcgctt > 1:10611184‑M2/1‑30 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCcgctt < 1:11596160‑M2/35‑6 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCcgctt < 1:13201916‑M2/35‑6 (MQ=255) cacTAAATCAGTAAGTTGGCAGCATCACCCGCTTc < 1:17707717/35‑1 (MQ=40) cacTAAATCAGTAAGTTGGCAGCATCACCCGCTTc < 1:7184935/35‑1 (MQ=40) cacTAAATCAGTAAGTTGGCAGCATCACCCGCTTc > 1:18370630/1‑35 (MQ=40) cacTAAATCAGTAAGTTGGCAGCATAACCCGCTTc < 1:16788400/35‑1 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCCGCTTcc > 1:1953451/1‑35 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCCGCTTcc > 1:17330211/1‑35 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCcgctttgt < 1:10032007‑M2/35‑9 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCCGCTTCCt < 1:10695351/35‑1 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCCGCTTCCt > 1:5033689/1‑35 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCCGCTTCCTGa < 1:2870225/35‑1 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCcgctttgtaag > 1:8915488‑M2/1‑24 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCCGCTTCCTGaa < 1:14359896/35‑1 (MQ=255) aTCAGTAAGTTGGCAGCATCACCCGCTTCCTGAAg < 1:2402668/35‑1 (MQ=255) tCAGTAAGTTGGCAGCATCACCCGCTTCCTGAAGt < 1:6587466/35‑1 (MQ=255) cAGTAAGTTGGCAGCATCACCCGCTTCCTGAAGTa > 1:3907708/1‑35 (MQ=255) aGTAAGTTGGCAGCATCACCCGCTTCCTGAAGTaa < 1:9967504/35‑1 (MQ=255) aGTAAGTTGGCAGCATCACCCGCTTCCTGAAGTaa > 1:714847/1‑35 (MQ=255) aaGTTGGCAGCATCACCCGCTTCCTGAAGTAAttt > 1:2824043/1‑35 (MQ=255) aaGTTGGCAGCATCACCCGCTTCCTGAAGTAAttt > 1:18116169/1‑35 (MQ=255) aaGTTGGCAGCATCACCCGCTTCCTGAAGTAAttt < 1:5959709/35‑1 (MQ=255) aGTTGGCAGCATCACCCGCTTCCTGAAGTAAtttt < 1:17912890/35‑1 (MQ=255) gTTGGCAGCATCACCCGCTTCCTGAAGTAAttttt > 1:10846969/1‑35 (MQ=255) tGGCAGCATCACCCGCTTCCTGAAGTAATTTTTCt > 1:12710588/1‑35 (MQ=255) tGGCAGCATCACCCGCTTCCTGAAGTAATTTTTCt < 1:20487717/35‑1 (MQ=255) ggCAGCATCACCCGCTTCCTGAAGTAATTTTTCTg < 1:5235125/35‑1 (MQ=255) gcagcaTCACCCGATTCCTGAAGTAATTTTTCTGc < 1:19424885/35‑1 (MQ=255) cagcaTCACCCGCTTCCTGAAGTAATTTTTCTGCg > 1:20103569/1‑35 (MQ=255) agcaTCACCcgctttgtaagtagtaaaatagttaa < 1:16133894‑M2/35‑27 (MQ=255) agcaTCACCCGCTTCCTGAAGTAATTTTTCTGCGa > 1:410411/1‑35 (MQ=255) agcaTCACCCGCTTCCTGAAGTAATTTTTCTGCGa < 1:1474678/35‑1 (MQ=255) agcaTCACCCGCTTCCTGAAGTAATTTTTCTGCGa < 1:10366188/35‑1 (MQ=255) caTCACCCGCTTCCTGAAGTAATTTTTCTGCGATa > 1:7629892/1‑35 (MQ=255) tCACCcgctttgtaagtagtaaaatagttaacccg > 1:8561479‑M2/1‑5 (MQ=255) cACCCGCTTCCTGAAGTAATTTTTCTGCGATaaaa < 1:11947014/35‑1 (MQ=255) aCCCGCTTCCTGAAGTAATTTTTCTGCGATaaaaa < 1:19760861/35‑1 (MQ=255) aCCCGCTTCCTGAAGTAATTTTTCTGCGATaaaaa > 1:7286271/1‑35 (MQ=255) cccgctttgtaagtagtaaaatagttaaaccgatc > 1:8077489‑M2/1‑2 (MQ=255) ccgctttgtaagtagtaaaatagttaacccgatcn > 1:9287313‑M2/1‑1 (MQ=255) ccgctttgtaagtagtaaaatagttaacccgatca > 1:3374726‑M2/1‑1 (MQ=255) ccgctttgtaagtagtaaaatagttaacccgatca > 1:18332120‑M2/1‑1 (MQ=255) ccGCTTCCTGAAGTAATTTTTCTGCGATAAAAAGa > 1:3597772/1‑35 (MQ=255) ccGCTTCCTGAAGTAATTTTTCTGCGATAAAAAGa < 1:2352439/35‑1 (MQ=255) ccGCTTCCTGAAGTAATTTTTCTGCGATAAAAAGa < 1:15919921/35‑1 (MQ=255) | ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGCTTCCTGAAGTAATTTTTCTGCGATAAAAAGA > REL606/3024678‑3024746 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |