New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3744020103 (1.000)12 (0.160) 5/36 NT 18.0% coding (300/807 nt) waaP kinase that phosphorylates core heptose of lipopolysaccharide
?REL606 = 3861481 32 (0.420)coding (1109/1617 nt) yieC carbohydrate‑specific outer membrane porin, cryptic

AAACGAGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3743981‑3744020
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccaGTAACTTTGGCCGTTATGCTGGCGCAAGTCCATT  <  REL606/3861481‑3861448
                                                                          
AAACGAGGTTCTGGTCAGCGGATTAATACCTTTTT                                         <  1:14489489/35‑1
AAACGAGGTTCTGGTCAGCGGATTAATACCTTTTT                                         <  1:9726640/35‑1
AAACGAGGTTCTGGTCAGCGGATTAATACCTTTTT                                         >  1:17488764/1‑35
AAACGAGGTTCTGGTCAGCGGATTAATACCTTTTT                                         >  1:5853646/1‑35
AAACGAGGTTCTGGTCAGCGGATTAATACCTTTTT                                         <  1:17484651/35‑1
AAACGAGGTTCTGGTCAGCGGATTAATACCTTTTT                                         <  1:2684142/35‑1
AAACGAGGTTCTGGTCAGCGGATTAATACCTTTTT                                         <  1:15695950/35‑1
 AACGAGGTTCTGGTCAGCGGATTAATACCTTTTTC                                        <  1:14552649/35‑1
 AACGAGGTTCTGGTCAGCGGATTAATACCTTTTTC                                        <  1:14052644/35‑1
 AACGAGGTTCTGGTCAGCGGATTAATACCTTTTTC                                        <  1:18601125/35‑1
 AACGAGGTTCTGGTCAGCGGATTAATACCTTTTTC                                        <  1:19641704/35‑1
 AACGAGGTTCTGGTCAGCGGATTAATACCTTTTTC                                        >  1:8001052/1‑35
 AACGAGGTTCTGGTCAGCGGATTAATACCTTTTTC                                        <  1:281533/35‑1
 AACGAGGTTCTGGTCAGCGGATTAATACCTTTTTC                                        <  1:3279038/35‑1
 AACGAGGTTCTGGTCAGCGGATTAATACCTTTTTC                                        <  1:3679330/35‑1
 AACGAGGTTCTGGTCAGCGGATTAATACCTTTTTC                                        <  1:10267575/35‑1
 AACGAGGTTCTGGTCAGCGGATTAACACCTTTTTC                                        >  1:1494542/1‑35
  ACGAGGTTCTGGTCAGCGGATTAATACCTTTTTCG                                       <  1:5022524/35‑1
  ACGAGGTTCTGGTCAGCGGATTAATACCTTTTTCG                                       <  1:4784166/35‑1
  ACGAGGTTCTGGTCAGCGGATTAATACCTTTTTCG                                       >  1:2320357/1‑35
  ACGAGGTTCTGGTCAGCGGATTAATACCTTTTTCG                                       <  1:3088/35‑1
  ACGAGGTTCTGGTCAGCGGATTAATACCTTTTTCG                                       >  1:3595763/1‑35
  ACGAGGTTCTGGTCAGCGGATTAATACCTTTTTCG                                       >  1:12577839/1‑35
   CGAGGTTCTGGTCAGCGGATTAATACCTTTTTCGC                                      >  1:3539584/1‑35
   CGAGGTTCTGGTCAGCGGATTAATACCTTTTTCGC                                      <  1:17276562/35‑1
   CGAGGTTCTGGTCAGCGGATTAATACCTTTTTCGC                                      <  1:10822456/35‑1
   CGAGGTTCTGGTCAGCGGATTAATACCTTTTTCGC                                      >  1:8002509/1‑35
   CGAGGTTCTGGTCAGCGGATTAATACCTTTTTCGC                                      >  1:19339973/1‑35
    GAGGTTCTGGTCAGCGGATTAATACTTTTTTCGCC                                     <  1:17099002/35‑1
    GAGGTTCTGGTCAGCGGATTAATACCTTTTTCGCC                                     >  1:4862591/1‑35
    GAGGTTCTGGTCAGCGGATTAATACCTTTTTCGCC                                     >  1:11557929/1‑35
    GAGGTTCTGGTCAGCGGATTAATACCTTTTTCGCC                                     >  1:11804008/1‑35
    GAGGTTCTGGTCAGCGGATTAATACCTTTTTCGCC                                     <  1:5092284/35‑1
    GAGGTTCTGGTCAGCGGATTAATACCTTTTTCGCC                                     <  1:18220603/35‑1
     AGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCA                                    <  1:20400485/35‑1
     AGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCA                                    <  1:20250018/35‑1
     AGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCA                                    >  1:5941176/1‑35
     AGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCA                                    >  1:14132418/1‑35
     AGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCA                                    >  1:17471300/1‑35
     AGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCA                                    >  1:485809/1‑35
     AGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCA                                    <  1:7632299/35‑1
                      caAATACCTTTTTCGCCAGTAACTTTGGCCGTTAT                   <  1:18448402/33‑1
                       aAATACCTTTTTCGCCAGTAACTTTGGCCGTTATG                  <  1:19699406/34‑1
                       aAATAACTTTTTCGCCAGTAACTTTGGCCGTTATG                  <  1:3771477/34‑1
                        AATACTTTTTTCGCCAGTAACTTTGGCCGTTATGC                 <  1:8569694/35‑1
                        AATACCTTTTTCGCCAGTAACTTTGGCCGTTATGC                 <  1:8202667/35‑1
                         ATACCTTTTTCGCCAGTAACTTTGGCCGTTATGCT                <  1:5219984/35‑1
                         ATACCTTTTTCGCCAGTAACTTTGGCCGTTATGCT                <  1:2366219/35‑1
                          TACCTTTTTCGCCAGTAACTTTGGCCGTTATGCTG               <  1:16702662/35‑1
                          TACCTCTTTCGCCAGTAACTTTGGCCGTTATGCTG               <  1:5926643/35‑1
                           aaCTTTTTCGCCAGTAACTTTGGCCGTTATGCTGG              <  1:17470844/33‑1
                           ACCTTTTTCGCCAGTAACTTTGGCCGTTATGCTGG              <  1:6103116/35‑1
                           ACCTCTTTCGCCAGTAACTTTGGCCGTTATGCTGG              <  1:9666948/35‑1
                            CCTCTTTCGCCAGTAACTTTGGCCGTTATGCTGGC             <  1:1746938/35‑1
                             ctcTTTCGCCAGTAACTTTGGCCGTTATGCTGGCG            <  1:10199160/32‑1
                             CTTTTTCGCCAGTAACTTTGGCCGTTATGCTGGCG            <  1:6257711/35‑1
                             CTTTTTCGCCAGTAACTTTGGCCGTTATGCTGGCG            <  1:7147422/35‑1
                              TTTTTCGCCAGTAACTTTGGCCGTTATGCTGGCGC           <  1:16228844/35‑1
                               TTTTCGCCAGTAACTTTGGCCGTTATGCTGGCGCA          <  1:17317863/35‑1
                                TTTCGCCAGTAACTTTGGCCGTTATGCTGGCGCAA         <  1:13961320/35‑1
                                TTTCGCCAGTAACTTTGGCCGTTATGCTGGCGCAA         <  1:13106335/35‑1
                                 TTCGCCAGTAACTTTGGCCGTTATGCTGGCGCAAG        <  1:19282223/35‑1
                                 TTCGCCAGTAACCTTGGCCGTTATGCTGGCGCAAG        <  1:19984311/35‑1
                                  TCGCCAGTAACTTTGGCCGTTATGCTGGCGCAAGT       <  1:5336511/35‑1
                                  TCGCCAGTAACTTTGGCCGTTATGCTGGCGCAAGT       <  1:4016063/35‑1
                                  TCGCCAGTAACTTTGGCCGTTATGCTGGCGCAAGT       <  1:12984081/35‑1
                                   CGCCAGTAACTTTGGCCGTTATGCTGGCGCAAGTC      <  1:15704406/35‑1
                                   CGCCAGTAACTTTGGCCGTTATGCTGGCGCAAGTC      <  1:12886206/35‑1
                                   CGCCAGTAACTTTGGCCGTTATGCTGGCGCAAGTC      <  1:9992224/35‑1
                                    GCCAGTAACTTTGGCCGTTATGCTGGCGCAAGTCC     <  1:7624693/35‑1
                                      CAGTAACTTTGGCCGTTATGCTGGCGCAAGTCCAT   <  1:3366782/35‑1
                                      CAGTAACTTTGGCCGTTATGCTGGCGCAAGTCCAT   <  1:9198563/35‑1
                                       AGTAACTTTGGCCGTTATGCTGGCGCAAGTCCATT  <  1:16946738/35‑1
                                       AGTAACTTTGGCCGTTATGCTGGCGCAAGTCCATT  <  1:13255478/35‑1
                                       AGTAACTTTGGCCGTTATGCTGGCGCAAGTCCATT  <  1:11470161/35‑1
                                       AGTAACTTTGGCCGTTATGCTGGCGCAAGTCCATT  <  1:10525088/35‑1
                                                                          
AAACGAGGTTCTGGTCAGCGGATTAATACCTTTTTCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3743981‑3744020
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccaGTAACTTTGGCCGTTATGCTGGCGCAAGTCCATT  <  REL606/3861481‑3861448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.