New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3190470 =58 (0.560)12 (0.120) 5/46 NT 19.7% coding (511/1269 nt) yhaO predicted transporter
?REL606 4585732 = 42 (0.430)coding (509/1023 nt) yjjN predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding

Only 100 of 110 total aligned reads displayed.

CACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCGGTCGAA  >  REL606/3190436‑3190504
                                  |                                  
gacaTTCCCCCCATCGACACGCCCAGCGCCGCGac                                    <  1:8492216/34‑1 (MQ=255)
 acaTTCCCACCATCGACACGCCCAGCGCCGCGacc                                   >  1:13864183/1‑35 (MQ=255)
 acaTTCCCACCATCGACACGCCCAGCGCCGCGacc                                   >  1:3856469/1‑35 (MQ=255)
 acaTTCCCACCATCGACACGCCCAGCGCCGCGacc                                   >  1:16414484/1‑35 (MQ=255)
 acaTTCCCACCATCGACACGCCCAGCGCCGCGacc                                   >  1:5392770/1‑35 (MQ=255)
 acaTTCCCACCATCGACACGCCCAGCGCCGCGacc                                   >  1:17315742/1‑35 (MQ=255)
 acaTTCCCACCATCGACACGCCCAGCGCCGCGacc                                   >  1:6729045/1‑35 (MQ=255)
  caTTCCCACCATCGACACGCCCAGCGCCGCGacca                                  >  1:4148682/1‑35 (MQ=255)
  caTACCCGCCATCGACACGCCCAGCGCCGCGacca                                  <  1:842732/35‑1 (MQ=25)
   atccccCCCATCGACACGCCCAGCGCCGCGaccac                                 <  1:611668/32‑1 (MQ=25)
   aTTCCCACCATCGACACGCCCAGCGCCGCGaccac                                 <  1:1945289/35‑1 (MQ=255)
   aTTCCCACCATCGACACGCCCAGCGCCGCGaccac                                 >  1:14222288/1‑35 (MQ=255)
   aTTCCCACCATCGACACGCCCAGCGCCGCGaccac                                 >  1:3172046/1‑35 (MQ=255)
     tCCCACCATCGACACGCCCAGCTCCGCGAccacca                               >  1:2789658/1‑35 (MQ=255)
       ccaccaTCTACACGCCCAGCGCCGCGACCACcagc                             >  1:12654576/1‑35 (MQ=255)
        caccaTCGACACGCCCAGCGCCGCGACCACcagca                            >  1:3709025/1‑35 (MQ=255)
         accaTCGACACGCCCAGCGCCGCGACCACcagcag                           >  1:591677/1‑35 (MQ=255)
         accaTCGACACGCCCAGCGCCGCGACCACcagcag                           >  1:4264457/1‑35 (MQ=255)
          ccaTCGACACGCCCAGCGCCGCGACCACCagcagc                          >  1:20202636/1‑35 (MQ=255)
          ccaTCGACACGCCCAGCGCCGCGACCACCagcagc                          >  1:10433541/1‑35 (MQ=255)
           caTCGACACGCCCAGCGCCGCTACCACCAGCAGCt                         >  1:13381974/1‑35 (MQ=255)
           caTCGACACGCCCAGCGCCGCGACCACCAGCAGCt                         >  1:12032178/1‑35 (MQ=255)
           caTCGACACGCCCAGCGCCGCGACCACCAGCAGCt                         >  1:18475374/1‑35 (MQ=255)
            aTCGACACGCCCAGCGCCGCGACCACCAGCAGCtt                        >  1:10140740/1‑35 (MQ=255)
            aTCGACACGCCCAGCGCCGCGACCACCAGCAGCtt                        >  1:10901965/1‑35 (MQ=255)
            aTCGACACGCCCAGCGCCGCGACCACCAGCAGCtt                        >  1:15562030/1‑35 (MQ=255)
             tCGACACGCCCAGCGCCGCGACCACCAGCAGCTTg                       >  1:9211735/1‑35 (MQ=255)
             tCGACACGCCCAGCGCCGCGACCACCAGCAGCTTg                       >  1:16648748/1‑35 (MQ=255)
              cGACACGCCCAGCGCCGCGACCACCAGCAGCTTgg                      >  1:11967903/1‑35 (MQ=255)
              cGACACGCCCAGCGCCGCGACCACCAGCAGCTTgg                      >  1:5810022/1‑35 (MQ=255)
              cGACACGCCCAGCGCCGCGACCACCAGCAGCTTgg                      >  1:15912946/1‑35 (MQ=255)
              cGACACGCCCAGCGCCGCGACCACCAGCAGCTTgg                      >  1:1412359/1‑35 (MQ=255)
               gACACGCCCAGCGCCGCGACCACCAGCAGCTTGGt                     >  1:3557822/1‑35 (MQ=255)
               gACACGCCCAGCGCCGCGACCACCAGCAGCTTGGt                     >  1:9454235/1‑35 (MQ=255)
                 cacGCCCAGCGCCGCGACCACCAGCAGCTTGGTCa                   >  1:6815342/1‑35 (MQ=255)
                 cacGCCCAGCGCCGCGACCACCAGCAGCTTGGTCa                   >  1:17637158/1‑35 (MQ=255)
                  acGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAg                  >  1:7148771/1‑35 (MQ=255)
                  acGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAg                  >  1:13242553/1‑35 (MQ=255)
                  acGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAg                  >  1:3234958/1‑35 (MQ=255)
                   cGCCCAGCGCCGCGACCACCGGCAGGCTGGTCCGc                 >  1:18533246/1‑35 (MQ=12)
                   cGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGc                 >  1:4110413/1‑35 (MQ=255)
                    gCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCa                >  1:13575252/1‑35 (MQ=255)
                    gCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCa                >  1:13041665/1‑35 (MQ=255)
                    gCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCa                >  1:7927565/1‑35 (MQ=255)
                     cccAGCGCCGCGACCACCAGCAGCTTGGTCAGCAc               >  1:14159581/1‑35 (MQ=255)
                     cccAGCGCCGCGACCACCAGCAGCTTGGTCAGCAc               >  1:16496996/1‑35 (MQ=255)
                     cccAGCGCCGCGACCACCAGCAGCTTGGTCAGCAc               >  1:6953548/1‑35 (MQ=255)
                      cgcgcgcCGCGCCCACCAGCAGCTTGGTCAGCAcc              <  1:869518/32‑1 (MQ=25)
                      ccAGCGCCGCGACCACCAGCAGCTTGGTCAGCAcc              >  1:4329571/1‑35 (MQ=255)
                      ccAGCGCCGCGACCACCAGCAGCTTGGTCAGCAcc              >  1:4684728/1‑35 (MQ=255)
                      ccAGCGCCGCGACCACCAGCAGCTTGGTCAGCAcc              >  1:6135598/1‑35 (MQ=255)
                      ccAGCGCCGCGACCACCAGCAGCTTGGTCAGCAcc              >  1:14634824/1‑35 (MQ=255)
                       cggccccccccCCACCAGCAGCTTGGTCAGCACCa             >  1:13853646‑M1/12‑35 (MQ=255)
                       cgcccccgcccCCACCAGCAGCTTGGTCAGCACCa             >  1:675483‑M1/12‑35 (MQ=255)
                       cAGCGCCGCGCCCACCAGCAGCTTGGTCAGCACCa             <  1:19045501/35‑1 (MQ=255)
                       cAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCa             >  1:12524641/1‑35 (MQ=255)
                        ggccccgcgcCCACCAGCAGCTTGGTCAGCACCAt            >  1:20287833‑M1/11‑35 (MQ=255)
                        agccccgcgcCCACCAGCAGCTTGGTCAGCACCAt            >  1:11840951‑M1/11‑35 (MQ=255)
                        aGCGCCGCGCCCACCAGCAGCTTGGTCAGCACCAt            <  1:11984297/35‑1 (MQ=255)
                        aGCGCCGCGCCCACCAGCAGCTTGGTCAGCACCAt            <  1:7854963/35‑1 (MQ=255)
                        aGCGCCGCGACCACCAGCAGCTTGGTCAGCACCAt            >  1:4561413/1‑35 (MQ=255)
                        aGCGCCGCGACCACCAGCAGCTTGGTCAGCACCAt            >  1:11142325/1‑35 (MQ=255)
                         gcgcCGCGACCACCAGCAGCTTGGTCAGCACCATg           >  1:14440760/1‑35 (MQ=255)
                         gccccgcgcCCACCAGCAGCTTGGTCAGCACCATg           >  1:2914075‑M1/10‑35 (MQ=255)
                         gccccgcccCCACCAGCAGCTTGGTCAGCACCATg           >  1:5544946‑M1/10‑35 (MQ=255)
                          cgccgcGACCACCAGCAGCTTGGTCAGCACCATGc          >  1:9734091/1‑35 (MQ=255)
                          cgccgcGACCACCAGCAGCTTGGTCAGCACCATGc          >  1:4459139/1‑35 (MQ=255)
                          cgccgcGACCACCAGCAGCTTGGTCAGCACCATGc          >  1:5701492/1‑35 (MQ=255)
                          cgccgcGACCACAAGCAGCTTGGTCAGCACCATGc          <  1:4702289/35‑1 (MQ=255)
                          ccccgcccCCACCAGCAGCTTGGTCAGCACCATGc          >  1:1986747‑M1/9‑35 (MQ=255)
                          ccccgcccCCACCAGCAGCTTGGTCAGCAACATGc          >  1:13242958‑M1/9‑35 (MQ=255)
                          ccccccccCCACCAGCAGCTTGGTCAGCACCATGc          >  1:15049191‑M1/9‑35 (MQ=255)
                           gccgcGACCACCAGCAGCTTGGTCAGCACCATGcc         >  1:18425627/1‑35 (MQ=255)
                           cccgcgcCCACCAGCAGCTTGGTCAGCACCATGcc         >  1:14252824‑M1/8‑35 (MQ=255)
                            ncggccCCACCAGCAGCTTGGTCAGCACCATGCCg        >  1:20615978‑M1/7‑35 (MQ=255)
                            ccgcGACCACCAGCAGCTTGGTCAGCACCATGCCg        >  1:20215846/1‑35 (MQ=255)
                             cgcgcCCACCAGCAGCTTGGTCAGCACCATGCCgg       >  1:19206156‑M1/6‑35 (MQ=255)
                             cgcgACCACCAGCATCTTGGTCAGCACCATGCCgg       >  1:2005171/1‑35 (MQ=255)
                             cgcccCCACCAGCAGCTTGGTCAGCACCATGCCgg       >  1:19376094‑M1/6‑35 (MQ=255)
                             cccccCCACCAGCAGCTTGGTCAGCACCATGCCgg       >  1:8646032‑M1/6‑35 (MQ=255)
                              gcgcCCACCAGCAGCTTGGTCAGCACCATGCCGGt      >  1:10718703‑M1/5‑35 (MQ=255)
                              gcgcCCACCAGCAGCTTGGTCAGCACCATGCCGGt      >  1:15586999‑M1/5‑35 (MQ=255)
                              gcgACCACCAGCAGCTTGGTCAGCACCATGCCGGt      >  1:4214024/1‑35 (MQ=255)
                              gcgACCACCAGCAGCTTGGTCAGCACCATGCCGGt      >  1:2446270/1‑35 (MQ=255)
                               cgcCCACCAGCAGCTTGGTCAGCACCATGCCGGTc     >  1:11371999‑M1/4‑35 (MQ=255)
                               cgcCCACCAGCAGCTTGGTCAGCACCATGCCGGTc     >  1:5661890‑M1/4‑35 (MQ=255)
                               cgACCACCAGCAGCTTGGTCAGCACCATGCCGGTc     >  1:14549226/1‑35 (MQ=255)
                               cccCCACCAGCAGCTTGGTCAGCACCATGCCGGTc     >  1:6974053‑M1/4‑35 (MQ=255)
                               cccCCACCAGCAGCTTGGTCAGCACCATGCCGGTc     >  1:19283847‑M1/4‑35 (MQ=255)
                               cccCCACCAGCAGCTTGGTCAGCACCATGCCGGTc     >  1:18551789‑M1/4‑35 (MQ=255)
                                gACCACCAGCAGCTTGGTCAGCACCATGCCGGTCg    >  1:18209240/1‑35 (MQ=255)
                                ccCCACCAGCAGCTTGGTCAGCACCATGCCGGTCg    >  1:4776801‑M1/3‑35 (MQ=255)
                                 cCCCCCAGCAGCTTGGTCAGCACCATGCCGGTCGa   >  1:19151639‑M1/2‑35 (MQ=255)
                                 cCCACCAGCAGCTTGGTCAGCACCATGCCGGTCGa   >  1:19973809‑M1/2‑35 (MQ=255)
                                 cCCACCAGCAGCTTGGTCAGCACCATGCCGGTCGa   >  1:14047314‑M1/2‑35 (MQ=255)
                                 cCCACCAGCAGCTTGGTCAGCACCATGCCGGTCGa   >  1:6214916‑M1/2‑35 (MQ=255)
                                 accaccAGCAGCTTGGTCAGCACCATGCCGGTCGa   >  1:14622170/1‑35 (MQ=255)
                                 accaccAGCAGCTTGGTCAGCACCATGCCGGTCGa   >  1:14132848/1‑35 (MQ=255)
                                 accaccAGCAGCTTGGTCAGCACCATGCCGGTCGa   >  1:931049/1‑35 (MQ=255)
                                  CCACCAGCAGCTTGGTCAGCACCATGCCGGTCGaa  >  1:14195444‑M1/1‑35 (MQ=255)
                                  |                                  
CACATTCCCACCATCGACACGCCCAGCGCCGCGACCACCAGCAGCTTGGTCAGCACCATGCCGGTCGAA  >  REL606/3190436‑3190504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.