New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 664687 | 67 (0.650) | 34 (0.380) | 20/42 | NT | 39.4% | intergenic (‑78/‑48) | gltL/insJ‑2 | ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein |
? | REL606 | 666134 = | 46 (0.510) | pseudogene (354/387 nt) | gltL | ATP‑binding protein of glutamate/aspartate transport system; b0652_2 |
Only 100 of 125 total aligned reads displayed.
TTAACTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTT > REL606/666101‑666168 | ttAACTGTCCAACTTTTTGGTGTCAGTAC‑ATTTCa > 1:2745646/1‑35 (MQ=255) ttAACTGTCCAACTTTTTGGGGTCAGTAC‑ATTTcg > 1:17977660/1‑34 (MQ=255) ttAACTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCa > 1:6292258/1‑35 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAg < 1:6953889/35‑1 (MQ=255) tAACTGTACAACTTTTTGGGGTCAGTAC‑ATTTCAg < 1:7191247/35‑1 (MQ=255) tgagcagaaagcccgacacgctccagcagtttCAg < 1:4240718‑M2/3‑1 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAgg > 1:10974702/1‑35 (MQ=255) gagcagaaagcccgacacgctccagcagtttCAgg > 1:13700005‑M2/32‑35 (MQ=255) gagcagaaagcccgacacgctccagcagtttCAgg > 1:7643158‑M2/32‑35 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAggg > 1:2794403/1‑35 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAggg < 1:14159931/35‑1 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAggg < 1:2304427/35‑1 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTAC‑AATCCAggg < 1:2435937/35‑1 (MQ=11) cTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGc > 1:2896254/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGc > 1:13239558/1‑35 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTAC‑AATCCAGGGc > 1:12173974/1‑35 (MQ=11) agcagaaagcccgacacgctccagcagtttCAggg > 1:7444281‑M2/31‑35 (MQ=255) agcagaaagcccgacacgctccagcagtttCAggg > 1:11672344‑M2/31‑35 (MQ=255) agcagaaagcccgacacgctccagcagtttCAggg > 1:8034156‑M2/31‑35 (MQ=255) agcagaaagcccgacacgctccagcagtttCAggg < 1:11056321‑M2/5‑1 (MQ=255) agcagaaagcccgacacgctccagcagtttCAggg > 1:8894899‑M2/31‑35 (MQ=255) tGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCt > 1:19145898/1‑35 (MQ=255) tGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCt > 1:18819481/1‑35 (MQ=255) tGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCt > 1:3487247/1‑35 (MQ=255) tGTCCAACTTTTTGGGGTCAGTAC‑AATCCAGGGCt > 1:16227253/1‑35 (MQ=14) gcagaaagcccgacacgctccagcagtttCAGGGc < 1:1798987‑M2/6‑1 (MQ=255) gTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCtt > 1:20274748/1‑35 (MQ=255) cagaaagcccgacacgctccagcagtttCAGGGCt > 1:15354950‑M2/29‑35 (MQ=255) cagaaagcccgacacgctccagcagtttCAGGGCt > 1:17604265‑M2/29‑35 (MQ=255) cagaaagcccgacacgctccagcagtttCAGGGCt > 1:8904595‑M2/29‑35 (MQ=255) agaaagcccgacacgctccagcagtttCAGGGCtt > 1:3326065‑M2/28‑35 (MQ=255) gaaagcccgacacgctccagcagtttCAGGGCttt < 1:18055978‑M2/9‑1 (MQ=255) ccAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCtttt > 1:15357225/1‑35 (MQ=255) cAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCttttt < 1:7000530/35‑1 (MQ=255) aaagcccgacacgctccagcagtttCAGGGCtttt > 1:3194309‑M2/26‑35 (MQ=255) aaagcccgacacgctccagcagtttCAGGGCtttt < 1:1033279‑M2/10‑1 (MQ=255) aaagcccgacacgctccagcagtttCAGGGCtttt < 1:4141127‑M2/10‑1 (MQ=255) aagcccgacacgctccagcagtttCAGGGCttttt < 1:4286815‑M2/11‑1 (MQ=255) aaCTTTTTGGGGTCAGTACAACTTCGGGGCttttc > 1:18506961/1‑34 (MQ=0) aaCTTTTTGGGGTCAGTAC‑ATTTCAGGGCTTTTTc < 1:12886781/35‑1 (MQ=255) aaCTTTTTGGGGTCAGTAC‑ATTTCAGGGCTTTTTc < 1:6421696/35‑1 (MQ=255) aaCTTTTTGGGGTCAGTAC‑ATTTCAGGGCTTTTTc > 1:16609813/1‑35 (MQ=255) agcccgacacgctccagcagtttCAGTGCTTTTTc > 1:16567051‑M2/24‑35 (MQ=255) agcccgacacgctccagcagtttCAGGGCTTTTTc > 1:2946758‑M2/24‑35 (MQ=255) agcccgacacgctccagcagtttCAGGGCTTTTTc < 1:14146082‑M2/12‑1 (MQ=255) agcccgacacgctccagcagtttCAGGGCTTTTTc > 1:16035788‑M2/24‑35 (MQ=255) tttttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACg < 1:1032592/35‑1 (MQ=255) tttttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACg < 1:8881663/35‑1 (MQ=255) tttttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACg > 1:14646941/1‑35 (MQ=255) tcttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGa < 1:59424/33‑1 (MQ=255) ccgacacgctccagcagtttCAGGGCTTTTTCACg < 1:12566898‑M2/15‑1 (MQ=255) ccgacacgctccagaagtttCAGGGCTTTTTCACg < 1:6107851‑M2/15‑1 (MQ=255) cagacacgctccagcagtttCAGGGCTTTTTCACg < 1:17729976‑M2/15‑1 (MQ=255) tttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAg > 1:2310492/1‑35 (MQ=255) tttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAg < 1:5393534/35‑1 (MQ=255) tttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAg < 1:17692511/35‑1 (MQ=255) tttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAg > 1:6581808/1‑35 (MQ=255) cgacacgctccagcagtttCAGGGCTTTTTCACGa > 1:12694022‑M2/20‑35 (MQ=255) cgacacgctccagcagtttCAGGGCTTTTTCACGa > 1:10531586‑M2/20‑35 (MQ=255) ttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAGc > 1:5323053/1‑35 (MQ=255) ttGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAGc < 1:13494482/35‑1 (MQ=255) gacacgctccagcagtttCAGGGCTTTTTCACGAg < 1:12512290‑M2/17‑1 (MQ=255) tGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAGcc > 1:8607355/1‑35 (MQ=255) cacgctccagcagtttCAGGGCTTTTTCACGAGcc < 1:16521062‑M2/19‑1 (MQ=255) cacgctccagcagtttCAGGGCTTTTTCACGAGcc > 1:3986679‑M2/17‑35 (MQ=255) gggTCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCgg < 1:6969402/35‑1 (MQ=255) gggTCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCgg < 1:19255583/35‑1 (MQ=255) gggTCAGTAC‑ATTTAAGGGCTTTTTCACGAGCCgg < 1:11595856/35‑1 (MQ=255) acgctccagcagtttCAGGGCTTTTTCACGAGCCg > 1:7894340‑M2/16‑35 (MQ=255) ggTCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGgc > 1:11910738/1‑35 (MQ=255) cgctccagcagtttCAGGGCTTTTTCACGAGCCgg < 1:15239560‑M2/21‑1 (MQ=255) gTCAGTAC‑ATTTCAGGGTTTTTTCACGAGCCGgcg < 1:13384539/35‑1 (MQ=255) gTCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGgcg > 1:4135610/1‑35 (MQ=255) tCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGgcgc < 1:12229038/35‑1 (MQ=255) tCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGgcgc > 1:882691/1‑35 (MQ=255) tCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGgcgc > 1:19570185/1‑35 (MQ=255) tCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGgcgc > 1:10697752/1‑35 (MQ=255) ctccagcagtttCAGGGCTTTTTCACGAGCCGgcg > 1:15729134‑M2/13‑35 (MQ=255) cAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGGCGCt > 1:17727729/1‑35 (MQ=255) ccagcagtttCAGGGCTTTTTCACGAGCCGGCGCt > 1:2621667‑M2/11‑35 (MQ=255) aGTAC‑ATTTCAGGGCTTTTTCACGAGCCGGCGCtt > 1:20283801/1‑35 (MQ=255) cagcagtttCAGGGCTTTTTCACGAGCCGGCGCtt > 1:19839372‑M2/10‑35 (MQ=255) cagtttCAGGGCTTTTTCACGAGCCGGCGCTTTAt > 1:7357921‑M2/7‑35 (MQ=255) aTTTCAGGGTTTTTTCGCGAGCCGGCGCTTTATcg < 1:15646362/35‑1 (MQ=38) aTTTCAGGGCTTTTTCACGAGCCGGCGCTTTATcg > 1:10494273/1‑35 (MQ=255) aTTTCAGGGCTTTTTCACGAGCCGGCGCTTTATcg < 1:4457560/35‑1 (MQ=255) aTTTCAGGGCTTTTTCACGAGCCGGCGCTTTATcg < 1:8097324/35‑1 (MQ=255) tttCAGGGTTTTTTCACGAGCCGGCGCTTTATcgc < 1:16753271‑M2/32‑1 (MQ=255) tttCAGGGCTTTTTCACGAGCCGGCGCTTTATcgc < 1:12286736‑M2/32‑1 (MQ=255) tttCAGGGCTTTTTCACGAGCCGGCGCTTTATcgc > 1:2869030‑M2/4‑35 (MQ=255) ttCGGGGCTCTTTCAGGAGCCGGCGCTTTATcgcg < 1:6771974/35‑1 (MQ=25) ttCAGGGCTTTTTCACGAGCCGGCGCTTTATcgcn < 1:6527019‑M2/33‑1 (MQ=255) tCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGt > 1:11408631‑M2/2‑35 (MQ=255) cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt > 1:10554384/1‑35 (MQ=255) cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt > 1:10109771/1‑35 (MQ=255) cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt > 1:7770161/1‑35 (MQ=255) cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt > 1:12731524/1‑35 (MQ=255) cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt < 1:679172/35‑1 (MQ=255) cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt < 1:14390051/35‑1 (MQ=255) cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt < 1:4444949/35‑1 (MQ=255) | TTAACTGTCCAACTTTTTGGGGTCAGTAC‑ATTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTT > REL606/666101‑666168 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |