New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2840701 =74 (0.720)27 (0.270) 8/46 NT 24.4% coding (1097/1098 nt) mltA membrane‑bound lytic murein transglycosylase A
?REL606 3891539 = 96 (0.970)intergenic (‑85/‑138) yieN/kup fused predicted transcriptional regulator: sigma54 activator protein/conserved protein/potassium transporter

ACCGCCCCGGGCGCAGGTAACGTCTTTAGCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2840735‑2840701
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGG  >  REL606/3891539‑3891572
                                                                     
cCCGCCCCGGGCGCAGGTAACGTCTTTAGCGGCTG                                    <  1:3069595/34‑1
cCCGCCCCGGGCGCAGGTAACGTCTTTAGCGGCTG                                    <  1:12928036/34‑1
cCCGCCCCGGGCGCAGGTAACGTCTTTAGCGGCTG                                    <  1:13061119/34‑1
 CCGCCCCGGGCGCAGGTAACGTCTTTAGCGGCTGG                                   >  1:867488/1‑35
   GCCCCGGGCGCAGGTAACGTCTTTAGCGGCTGGGG                                 >  1:16426131/1‑35
   GCCCCGGGCGCAGGTAACGTCTTTAGCGGCTGGGG                                 >  1:6073460/1‑35
   GCCCCGGGCGCAGGTAACGTCTTTAGCGGCTGGGG                                 >  1:15871758/1‑35
     CCCGGGCGCAGGTAACGTCTTTAGCGGCTGGGGGG                               >  1:1609758/1‑35
      CCGGGCGCAGGTAACGTCTTTAGCGGCTGGTGGGG                              >  1:17128694/1‑35
      CCGGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGc                              >  1:142281/1‑34
      CCGGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGG                              >  1:2216413/1‑35
      CCGGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGG                              >  1:20374650/1‑35
       CGGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGGT                             >  1:3307985/1‑35
       CGGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGGT                             >  1:17644781/1‑35
        GGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGGga                            >  1:20160620/1‑33
        GGGCGCAGGTAACGTCTTTAGCGGCTGGGGGGGga                            >  1:18989422/1‑33
         GGCGCAGGTAACGTCTTTAGCGGCTGGTGGGGTAT                           >  1:6679040/1‑35
         GGCGCAGGTAACGTCTTTAGCGGCTGGGGGGGcaa                           >  1:13089583/1‑32
          GCGCAGGTAACGTCTTTAGCGGCTGGGGGGGTATT                          >  1:6014331/1‑35
          GCGCAGGTAACGTCTTTAGCGGCTGGGGGGGTATT                          >  1:7687687/1‑35
           CGCAGGTAACGTCTTTAGCGGCTGGGGGGGTTTTT                         >  1:8837548/1‑35
           CGCAGGTAACGTCTTTAGCGGCTGGGGGGGTGTTT                         >  1:3875650/1‑35
           CGCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTT                         >  1:5918085/1‑35
           CGCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTT                         >  1:10272572/1‑35
            GCAGGTAACGTCTTTAGCGGCTGGGGTGGTATTTT                        >  1:8748661/1‑35
            GCAGGTAACGTCTTTAGCGGCTGGGGGGGTTTTTc                        >  1:17847163/1‑34
            GCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTct                        >  1:20240324/1‑33
            GCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTTT                        >  1:20029582/1‑35
            GCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTTT                        >  1:18348267/1‑35
            GCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTTT                        >  1:16206997/1‑35
            GCAGGTAACGTCTTTAGCGGCTGGGGGGGTATTTT                        >  1:10167706/1‑35
             CAGGTAACGTCTTTAGCGGCTGGGGGGGTATTTTT                       >  1:2115748/1‑35
             CAGGTAACGTCTTTAGCGGCTGGGGGGGTATTTTT                       >  1:12473859/1‑35
               GGTAACGTCTTTAGCGGCTGGGGGGGTATTTTTtt                     >  1:15846926/1‑33
               GGTAACGTCTTTAGCGGCTGGGGGGGTATTTTTtt                     >  1:932120/1‑33
                 TAACGTCTTTAGCGGCTGGGGGGGTATTTTTTTTT                   >  1:8422934/1‑35
                                  GGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGG  >  1:20212054/1‑35
                                  GGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGG  >  1:7306471/1‑35
                                  GGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGG  >  1:1269890/1‑35
                                  GGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGG  <  1:10862690/35‑1
                                                                     
ACCGCCCCGGGCGCAGGTAACGTCTTTAGCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2840735‑2840701
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGG  >  REL606/3891539‑3891572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.