New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 67279679 (0.770)10 (0.150) 3/32 NT 16.4% coding (181/1539 nt) lnt apolipoprotein N‑acyltransferase
?REL606 1048881 = 49 (0.720)intergenic (‑78/‑349) serT/hyaA tRNA‑Ser/hydrogenase 1, small subunit

Only 100 of 140 total aligned reads displayed.

CTAATTTGTTTGTTTGCCTGAAAAACAGCCAAAAGTGCATTGATAGCGTGAAATAACAGCAGATTGAT  >  REL606/1048848‑1048915
                                 |                                  
cTAATTTGTTTGTTTGCCTGAAAAACAGCCAAAAg                                   >  1:7800801/1‑35 (MQ=255)
 tAATTTGTTTGTTTGCCTGAAAAACAGCCAAAAGt                                  >  1:17439127/1‑35 (MQ=255)
 tAATTTGTTTGTTTGCCTGAAAAACAGCCAAAAGt                                  >  1:16268694/1‑35 (MQ=255)
   aTTTGTTTGTTTGCCTGAAAACCAGCCAAAAGTGc                                >  1:57545/1‑35 (MQ=255)
   aTTTGTTTGTTTGCCTGAAAAACAGCCAAAAGTGc                                >  1:6408861/1‑35 (MQ=255)
   aTTTGTTTGTTTGCCTGAAAAACAGCCAAAAGTGc                                >  1:3345724/1‑35 (MQ=255)
    tttgtttgtttgCCTGAAAAACAGCCAAAAGTGCa                               >  1:18814306/1‑35 (MQ=255)
    tttgtttgtttgCCTGAAAAACAGCCAAAAGTGCa                               >  1:9458165/1‑35 (MQ=255)
    tttgtttgtttgCCTGAAAAACAGCCAAAAGTGCa                               >  1:7454367/1‑35 (MQ=255)
    tttgtttgtttgCCTGAAAAACAGCCAAAAGTGCa                               >  1:3038572/1‑35 (MQ=255)
    tttgtttgtttgCCTGAAAAACAGCCAAAAGTGCa                               >  1:12395943/1‑35 (MQ=255)
     ttgtttgtttgCCTGAAAAACAGCCAAAAGTGCAt                              >  1:16075800/1‑35 (MQ=255)
     ttgtttgtttgCCTGAAAAAAAGCCAAAAGTGCAt                              <  1:9582340/35‑1 (MQ=255)
      tgtttgtttgCCTGAAAAACAGCCAAAAGTGCAtt                             >  1:16995936/1‑35 (MQ=255)
      tgtttgtttgCCTGAAAAACAGCCAAAAGTGCAtt                             >  1:9063322/1‑35 (MQ=255)
       gtttgtttgCCTGAAAAACAGCCAAAAGTGCATTg                            >  1:5391463/1‑35 (MQ=255)
       gtttgtttgCCTGAAAAACAGCCAAAAGTGCATTg                            >  1:9431517/1‑35 (MQ=255)
       gtttgtttgCCTGAAAAACAGCCAAAAGTGCATTg                            >  1:17641756/1‑35 (MQ=255)
        tttgtttgCCTGAAAAACAGCCAAAAGTGCATTGa                           >  1:15117228/1‑35 (MQ=255)
         ttgtttgCCTGAAAAACAGCCAAAAGTGCATTGAt                          >  1:7778316/1‑35 (MQ=255)
         ttgtttgCCTGAAAAACAGCCAAAAGTGCATTGAt                          >  1:8241939/1‑35 (MQ=255)
         ttgtttgCCTGAAAAACAGCCAAAAGTGCATTGAt                          >  1:7967257/1‑35 (MQ=255)
         ttgtttgCCTGAAAAACAGCCAAAAGTGCATTGAt                          >  1:2932535/1‑35 (MQ=255)
         ttgtttgCCTGAAAAACAGCCAAAAGTGCATTGAt                          >  1:14764794/1‑35 (MQ=255)
          tgtttgCCTGAAAAACAGCCAAAAGTGCATTGATa                         >  1:18575341/1‑35 (MQ=255)
          tgtttgCCTGAAAAACAGCAAAAAGTGCATTGATa                         <  1:11262388/35‑1 (MQ=255)
           gtttgCCTGAAAAACAGCCAAAAGTGCATTGATAg                        >  1:11095733/1‑35 (MQ=255)
           gtttgCCTGAAAAACAGCCAAAAGTGCATTGATAg                        >  1:12901313/1‑35 (MQ=255)
            tttgCCTGAAAAACAGCCAAAAGTGCATTGATAGc                       >  1:19803903/1‑35 (MQ=255)
             ttgCCTGAAAAACAGCCAAAAGTGCATTGATAGCg                      >  1:11738219/1‑35 (MQ=255)
              tgCCTGAAAAACAGCCAAAAGTGCATTGATAGCGt                     >  1:16036069/1‑35 (MQ=255)
              tgCCTGAAAAACAGCCAAAAGTGCATTGATAGCGt                     >  1:3436379/1‑35 (MQ=255)
               gccaaaaccccagccaaaAGTGCATTGATAGCGTg                    <  1:20381842‑M2/17‑1 (MQ=255)
               gCCTTAAAAACAGCCAAAAGTGCATTGATAGCGTg                    >  1:19941706/1‑35 (MQ=255)
               gCCTGAAAAACAGCCAAAAGTGCATTGATAGCGTg                    >  1:16431930/1‑35 (MQ=255)
               cccaaaaccccagccaaaAGTGCATTGATAGCGTg                    <  1:11521607‑M2/17‑1 (MQ=255)
               cccaaaaccccagccaaaAGTGCATTGATAGCGTg                    <  1:6752924‑M2/17‑1 (MQ=255)
                ccaaacccccagccaaaAGTGCATTGATAGCGTGa                   <  1:17256024‑M2/18‑1 (MQ=255)
                ccaaaaccccagccaaaAGTGCATTGATAGCGTGa                   <  1:5492179‑M2/18‑1 (MQ=255)
                ccTGAAAAACAGCCAAAAGTGCATTGATAGCGTGa                   >  1:2362507/1‑35 (MQ=255)
                 caaacccccagccaaaAGTGCATTGATAGCGTGaa                  <  1:9039360‑M2/19‑1 (MQ=255)
                 caaaaccccagccaaaAGTGCATTGATAGCGTGaa                  <  1:10665819‑M2/19‑1 (MQ=255)
                 cTGAAAAACAGCCAAAAGTGCATTGATATCGTGaa                  >  1:3942997/1‑35 (MQ=255)
                 cTGAAAAACAGCCAAAAGTGCATTGATAGCGTGaa                  >  1:14469460/1‑35 (MQ=255)
                  tGAAAAACAGCCAAAAGTGCATTGATAGCGTGaaa                 >  1:14757794/1‑35 (MQ=255)
                  tGAAAAACAGCCAAAAGTGCATTGATAGCGTGaaa                 >  1:11835728/1‑35 (MQ=255)
                  aaaaccccagccaaaAGTGCATTGATAGCGTGaaa                 <  1:10316748‑M2/20‑1 (MQ=255)
                   gAAAAACAGCCAAAAGTGCATTGATAGCGTGAAAt                >  1:5111806/1‑35 (MQ=255)
                   aaaccccagccaaaAGTGCATTGATAGCGTGAAAt                <  1:3704‑M2/21‑1 (MQ=255)
                    aaccccagccaaaAGTGCATTGATAGCGTGAAATa               <  1:9153490‑M2/22‑1 (MQ=255)
                    aaaaaCAGCCAAAAGTGCATTGATAGCGTGAAATa               >  1:7990491/1‑35 (MQ=255)
                     accccagccaaaAGTGCATTGATAGCGTGAAATaa              <  1:3630174‑M2/23‑1 (MQ=255)
                     accccagccaaaAGTGCATTGATAGCGTGAAATaa              <  1:20069333‑M2/23‑1 (MQ=255)
                      tcccagccaaaAGTGCATTGATAGCGTGAAATAAc             <  1:4992768‑M2/24‑1 (MQ=255)
                       cccagccaaaAGTGCATTGATAGCGTGAAATAAca            <  1:14363741‑M2/25‑1 (MQ=255)
                       cccagccaaaAGTGCATTGATAGCGTGAAATAAca            <  1:8584498‑M2/25‑1 (MQ=255)
                       aaCAGCCAAAAGTGCATTGATAGCGTGAAATAAca            >  1:1274232/1‑35 (MQ=255)
                       aaCAGCCAAAAGTGCATTGATAGCGTGAAATAAca            >  1:14522864/1‑35 (MQ=255)
                       aaCAGCCAAAAGTGCATTGATAGCGTGAAATAAca            >  1:15456093/1‑35 (MQ=255)
                       aaCAGCCAAAAGTGCATTGATAGCGTGAAATAAca            >  1:2959012/1‑35 (MQ=255)
                        ccagccaaaAGTGCATTGATAGCGTGAAATAAcag           <  1:17327128‑M2/26‑1 (MQ=255)
                        aCAGCCAAAAGTGCATTGATAGCGTGAAATAAcag           >  1:19166633/1‑35 (MQ=255)
                         cagccgaaAGTGCATTGATAGCGTGAAATAAcagc          <  1:20133‑M2/27‑1 (MQ=255)
                         cagccaaaAGTGCATTGATAGCGTGAAATAAcagc          <  1:13117187‑M2/27‑1 (MQ=255)
                         cagccaaaAGTGCATTGATAGCGTGAAATAAcagc          <  1:916990‑M2/27‑1 (MQ=255)
                         cagccaaaAGTGCATTGATAGCGTGAAATAAcagc          <  1:9327988‑M2/27‑1 (MQ=255)
                          agccaaaAGTGCATTGATAGCGTGAAATAAcagca         >  1:5040993‑M2/8‑35 (MQ=255)
                          agccaaaAGTGCATTGATAGCGTGAAATAAcagca         >  1:9773785‑M2/8‑35 (MQ=255)
                          agccaaaAGTGCATTGATAGCGTGAAATAAcagca         <  1:19392626‑M2/28‑1 (MQ=255)
                           gccaaaAGTGCATTGATAGCGTGAAATAAcagcag        <  1:4376230‑M2/29‑1 (MQ=255)
                           gccaaaAGTGCATTGATAGCGTGAAATAAcagcag        <  1:16496329‑M2/29‑1 (MQ=255)
                           gccaaaAGTGCATTGATAGCGTGAAATAAcagcag        <  1:2705613‑M2/29‑1 (MQ=255)
                           gccaaaAGTGCATTGATAGCGTGAAATAAcagcag        <  1:11090638‑M2/29‑1 (MQ=255)
                           gccaaaAGTGCATTGATAGCGTGAAATAAcagcag        >  1:1860706‑M2/7‑35 (MQ=255)
                           gccaaaAGTGCATTGATAGCGTGAAATAAcagcag        >  1:19100133‑M2/7‑35 (MQ=255)
                           gccaaaAGTGCATTGATAGCGTGAAATAAcagcag        >  1:18940060‑M2/7‑35 (MQ=255)
                            ccaaaAGTGCATTGATAGCGTGAAATAACAGCAGa       <  1:8778737‑M2/30‑1 (MQ=255)
                            ccaaaAGTGCATTGATAGCGTGAAATAACAGCAGa       >  1:17239767‑M2/6‑35 (MQ=255)
                            ccaaaAGTGCATTGATAGCGTGAAATAACAGCAGa       >  1:8562455‑M2/6‑35 (MQ=255)
                            ccaaaAGTGCATTGATAGCGTGAAATAACAGCAGa       >  1:7579899‑M2/6‑35 (MQ=255)
                            ccaaaAGTGCATTGATAGCGTGAAATAACAGCAGa       >  1:18784734‑M2/6‑35 (MQ=255)
                            ccaaaAGTGCATTGATAGCGTGAAATAACAGCAGa       <  1:7318025‑M2/30‑1 (MQ=255)
                              aaaAGTGCATTGATAGCGTGAAATAACAGCAGAtt     <  1:17512076‑M2/32‑1 (MQ=255)
                               aaAGTGCATTGATAGCGTGAAATAACAGCAGATTg    >  1:10295520‑M2/3‑35 (MQ=255)
                               aaAGTGCATTGATAGCGTGAAATAACAGCAGATTg    <  1:5274177‑M2/33‑1 (MQ=255)
                               aaAGTGCATTGATAGCGTGAAATAACAGCAGATTg    >  1:16728531‑M2/3‑35 (MQ=255)
                               aaAGTGCATTGATAGCGTGAAATAACAGCAGATTg    >  1:4652336‑M2/3‑35 (MQ=255)
                               aaAGTGCATTGATAGCGTGAAATAACAGCAGATTg    >  1:12350611‑M2/3‑35 (MQ=255)
                                aAGTGCATTTATAGCGTGAAATAACAGCAGATTGa   >  1:17419212‑M2/2‑35 (MQ=255)
                                aAGTGCATTGATAGCGTGAAATAACAGCAGATTGa   <  1:5822932‑M2/34‑1 (MQ=255)
                                aAGTGCATTGATAGCGTGAAATAACAGCAGATTGa   >  1:18230296‑M2/2‑35 (MQ=255)
                                aAGTGCATTGATAGCGTGAAATAACAGCAGATTGa   >  1:20373955‑M2/2‑35 (MQ=255)
                                 aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt  >  1:10507564/1‑35 (MQ=255)
                                 aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt  >  1:10273840/1‑35 (MQ=255)
                                 aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt  <  1:11769368/35‑1 (MQ=255)
                                 aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt  <  1:12047796/35‑1 (MQ=255)
                                 aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt  <  1:18472935/35‑1 (MQ=255)
                                 aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt  <  1:19309016/35‑1 (MQ=255)
                                 aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt  >  1:19990654/1‑35 (MQ=255)
                                 aGTGCATTGATAGCGTGAAATAACAGCAGATTGAt  <  1:3277403/35‑1 (MQ=255)
                                 |                                  
CTAATTTGTTTGTTTGCCTGAAAAACAGCCAAAAGTGCATTGATAGCGTGAAATAACAGCAGATTGAT  >  REL606/1048848‑1048915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.