Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,648,342 | IS1 (–) +9 bp | 28.2% | intergenic (+195/‑221) | ynfM → / → asr | predicted transporter/acid shock protein precursor |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1323488 | NA (NA) | 22 (0.210) | 18/48 | NT | 26.6% | noncoding (768/768 nt) | IS1 | repeat region |
? | REL606 | = 1648350 | 38 (0.590) | intergenic (+203/‑221) | ynfM/asr | predicted transporter/acid shock protein precursor | |||||
* | ? | REL606 | 1648342 = | 36 (0.600) | 7 (0.090) | 6/36 | NT | 13.1% | intergenic (+195/‑229) | ynfM/asr | predicted transporter/acid shock protein precursor |
? | REL606 | = 3024712 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
Only 100 of 180 total aligned reads displayed.
TGTGTCATTTATTACTGATGCGCAGTTATTCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCAA > REL606/1648308‑1648376 | tgtgtCATTTATTACTGATGCGCAGTTATTCTAcc > 1:2455801/1‑35 (MQ=255) tgtgtCATTTATTACTGATGCGCAGTTATTCTAcc > 1:5346035/1‑35 (MQ=255) tgtgtCATTTATTACTGATGCGCAGTTATTCTAcc > 1:7201921/1‑35 (MQ=255) tgtgtCATTTATTACTGATGCGCAGTTATTCTAcc < 1:8563387/35‑1 (MQ=255) gtgtCATTTATTACTGATGCGCAGTTATTCTACCg < 1:1009340/35‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg > 1:18219344‑M1/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg > 1:16586982‑M1/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg < 1:16251464‑M1/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg < 1:20306430‑M1/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg > 1:15640196‑M1/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg > 1:1731857‑M1/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg > 1:20547022‑M1/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg > 1:2233413‑M1/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg < 1:14846074‑M1/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg > 1:2547356‑M1/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg > 1:2547670‑M1/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg > 1:2901790‑M1/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg > 1:13456738‑M1/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg > 1:7131642‑M1/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg < 1:6936563‑M1/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccCg > 1:1114706‑M1/34‑35 (MQ=255) tgtCATTTATTACTGATGCGCAGTTATTCTACCGc > 1:14294137/1‑35 (MQ=255) tgtCATTTATTACTGATGCGCAGTTATTCTACCGc > 1:4405346/1‑35 (MQ=255) atacactaaatcagtaagttggcagcatcaccCGc > 1:12380815‑M1/33‑35 (MQ=255) tacactaaatcagtaagttggcagcatcaccCGCt > 1:3405457‑M1/32‑35 (MQ=255) gtCATTTATTACTGATGCTCAGTTATTCTACCGCt > 1:3310944/1‑35 (MQ=255) gtCATTTATTACTGATGCGCAGTTATTCTACCGCt > 1:2650037/1‑35 (MQ=255) acactaaatgagtaagttggcagcatcaccCGCtt > 1:6667373‑M1/31‑35 (MQ=255) acactaaatcagtaagttggcagcatcaccCGctn > 1:11574430‑M1/31‑34 (MQ=255) acactaaatcagtaagttggcagcatcaccCGCtt < 1:13201916‑M1/5‑1 (MQ=255) acactaaatcagtaagttggcagcatcaccCGCtt < 1:19848572‑M1/5‑1 (MQ=255) acactaaatcagtaagttggcagcatcaccCGCtt > 1:19253386‑M1/31‑35 (MQ=255) cactaaatcagtaagttggcagcatcaccCGCttt > 1:11781430‑M1/30‑35 (MQ=255) cactaaatcagtaagttggcagcatcaccCGCttt > 1:3357324‑M1/30‑35 (MQ=255) cATTTATTACTGATGCGCAGTTATTCTACCGCttt < 1:433255/35‑1 (MQ=255) aTTTATTACTGATGCGCAGTTATTCTACCGCTTTg < 1:5195583/35‑1 (MQ=255) aTTTATTACTGATGCGCAGTTATTCTACCGCTTTg > 1:7486918/1‑35 (MQ=255) tttATTACTGATGCGCAGTTATTCTACCGCTTTGt < 1:15885983/35‑1 (MQ=255) tttATTACTGATGCGCAGTTATTCTACCGCTTTGt < 1:10069337/35‑1 (MQ=255) ctaaatcagtaagttggcagcatcaccCGCTTTGt < 1:10032007‑M1/8‑1 (MQ=255) ttattaCTGATGCGCAGTTATTCTACCGCTTTGTa > 1:5922325/1‑35 (MQ=255) ttattaCTGATGCGCAGTTATTCTACCGCTTTGTa < 1:11212721/35‑1 (MQ=255) tattaCTGATGCGCAGTTATTCTACCGCTTTGTaa < 1:6550115/35‑1 (MQ=255) tattaCTGATGCGCAGTTATTCTACCGCTTTGTaa > 1:8204674/1‑35 (MQ=255) tattaCTGATGCGCAGTTATTCTACCGCTTTGTaa < 1:16315751/35‑1 (MQ=255) tattaCTGATGCGCAGTTATTCTACCGCTTTGTAg < 1:14501247‑M2/35‑2 (MQ=255) attaCTGATGCGCAGTTATTCTACCGCTTTGTAag < 1:19066419/35‑1 (MQ=255) aatcagtaagttggcagcatcaccCGCTTTGTAag > 1:8915488‑M1/25‑35 (MQ=255) ttaCTGATGCGCAGTTATTCTACCGCTTTGTAagt > 1:18033844/1‑35 (MQ=255) ttaCTGATGCGCAGTTATTCTACCGCTTTGTAagt < 1:6201912/35‑1 (MQ=255) ttaCTGATGCGCAGTTATTCTACCGCTTTGTAagt > 1:9402484/1‑35 (MQ=255) tcagtaagttggcagcatcaccCGCTTTGTAagta < 1:7766393‑M1/13‑1 (MQ=255) tcagtaagttggcagcatcaccCGCTTTGTAagta > 1:19528771‑M1/23‑35 (MQ=255) tcagtaagttggcagcatcaccCGCTTTGTAagta < 1:9673636‑M1/13‑1 (MQ=255) taCTGATGCGCAGTTATTCTACCGCTTTGTAagta > 1:5720243/1‑35 (MQ=255) aCTGATGCGCAGTTATTCTACCGCTTTGTAagtag > 1:14615140/1‑35 (MQ=255) aCTGATGCGCAGTTATTCTACCGCTTTGTAagtag > 1:17994802/1‑35 (MQ=255) aCTGATGCCCAGTTATTCTACCGCTTTGTAagtag > 1:1141844/1‑35 (MQ=255) cTGATGCGCAGTTATTCTACCGCTTTGTAagtagt < 1:7908692/35‑1 (MQ=255) gATGCGCAGTTATTCTACCGCTTTGTAggtaatga < 1:17250351‑M2/35‑9 (MQ=255) gATGCGCAGTTATTCTACCGCTTTGTAAGTAGTaa > 1:16423083/1‑35 (MQ=255) gATGCGCAGTTATTCTACCGCTTTGTAAGTAGTaa > 1:4323392/1‑35 (MQ=255) gATGCGCAGTTATTATACCGCTTTGTAAGTAGTaa < 1:10543861/35‑1 (MQ=255) aTGCGCAGTTATTCTACCGCTTTGTAggtaatgac < 1:18626996‑M2/35‑10 (MQ=255) aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa < 1:10560611/35‑1 (MQ=255) aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa > 1:12134625/1‑35 (MQ=255) aTGCGCAGTTATTCTACCGCTTTGTAAGTAGTaaa > 1:9243855/1‑35 (MQ=255) gcgcAGTTATTCTACCGCTTTGTAAGTAGTAAAAt < 1:7332265/35‑1 (MQ=255) gcgcAGTTATTCTACCGCTTTGTAAGTAGTAAAAt < 1:13817037/35‑1 (MQ=255) gcgcAGTTATTCTACCGCTTTGTAAGTAGTAAAAt < 1:11413052/35‑1 (MQ=255) cgcAGTTATTCTACCGCTTTGTAggtaatgactcc > 1:6917878‑M2/1‑23 (MQ=255) cgcAGTTATTCTACCGCTTTGTAAGTAGTAAAATa < 1:11481835/35‑1 (MQ=255) gcAGTTATTCTACCGCTTTGTAAGTAGTAAAATAg < 1:15597593/35‑1 (MQ=255) cAGTTATTCTACCGCTTTGTAggtaatgactccaa < 1:694466‑M2/35‑15 (MQ=255) gTTATTCTACCGCTTTGTAAGTAGTAAAATAGTTa > 1:2777342/1‑35 (MQ=255) gTTATTCTACCGCTTTGTAAGTAGTAAAATAGTTa > 1:5974791/1‑35 (MQ=255) cagcatcaccCGCTTTGTAAGTAGTAAAATAGTTa < 1:4664419‑M1/25‑1 (MQ=255) ttATTCTACCGCTTTGTAggtaatgactccaactt > 1:4869908‑M2/1‑18 (MQ=255) ttATTCTACCGCTTTGTAggtaatgactccaactt > 1:4531990‑M2/1‑18 (MQ=255) ttATTCTACCGCTTTGTAAGTAGTAAAATAGTTaa > 1:7606610/1‑35 (MQ=255) agcatcaccCGCTTTGTAAGTAGTAAAATAGTTaa < 1:16133894‑M1/26‑1 (MQ=255) tATTCTACCGCTTTGTAAGTAGTAAAATAGTTAAc < 1:17183952/35‑1 (MQ=255) tATTCTACCGCTTTGTAAGTAGTAAAATAGTTAAc < 1:190067/35‑1 (MQ=255) aTTCTACCGCTTTGTAAGTAGTAAAATAGTTAAcc < 1:3882955/35‑1 (MQ=255) ttCTACCGCTTTGTAggtaatgactccaacttatt < 1:5415439‑M2/35‑21 (MQ=255) ttCTACCGCTTTGTAAGTAGTAAAATAGTTAAccc > 1:14412657/1‑35 (MQ=255) tCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCg < 1:8296872/35‑1 (MQ=255) tCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCg < 1:12980634/35‑1 (MQ=255) cTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGa > 1:10164890/1‑35 (MQ=255) cTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGa < 1:11872667/35‑1 (MQ=255) tACCGCTTTGTAAGTAGTAAAATAGTTAACCCGAt < 1:323936/35‑1 (MQ=255) tACCGCTTTGTAAGTAGTAAAATAGTTAACCCGAt > 1:1502277/1‑35 (MQ=255) ccCGCTTTGTAAGTAGTAAAATAGTTAAACCGATc > 1:8077489‑M1/3‑35 (MQ=255) aCCGCTTTGTAAGTAGTAAAATAGTTAACCCGATc < 1:19337228/35‑1 (MQ=255) aCCGCTTTGTAAGTAGTAAAATAGTTAACCCGATc > 1:1061415/1‑35 (MQ=255) aCCGCTTTGTAAGTAGTAAAATAGTTAACCCGATc > 1:9863227/1‑35 (MQ=255) cCGCTTTGTAAGTAGTAAAATAGTTAACCCGAtcn > 1:9287313‑M1/2‑34 (MQ=255) cCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCa < 1:14592670‑M1/34‑1 (MQ=255) cCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCa > 1:18332120‑M1/2‑35 (MQ=255) CGCTTTGTAAGTAGTAAAATAGTTAACCCGATCaa < 1:10295844‑M1/35‑1 (MQ=255) | TGTGTCATTTATTACTGATGCGCAGTTATTCTACCGCTTTGTAAGTAGTAAAATAGTTAACCCGATCAA > REL606/1648308‑1648376 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |