New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1145450 | 100 (0.970) | 8 (0.100) | 4/36 | NT | 10.0% | intergenic (‑15/‑140) | flgA/flgB | flagellar basal body P‑ring biosynthesis protein A/flagellar basal‑body rod protein B |
? | REL606 | = 3613817 | 69 (0.900) | coding (1255/1950 nt) | yhjK | predicted diguanylate cyclase |
Only 100 of 190 total aligned reads displayed.
CTACGTTTTATTATCAGCATTTTCGCCCCCAGCCATTTCTACAACGTGAATTGTACCTGTCCGCAATGA > REL606/1145416‑1145484 | cTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA < 1:8261194‑M1/35‑1 (MQ=255) tACGTTTTATTATCAGCATTTTCGCCCCCCGCCAt > 1:7447601/1‑35 (MQ=255) tACGTTTTATTATCAGCATTTTCGCCCCCAGCCAt > 1:13127799/1‑35 (MQ=255) tACGTTTTATTATCAGCATTTTCGCCCCCAGCCAt > 1:15942587/1‑35 (MQ=255) tACGTTTTATTATCAGCATTTTCGCCCCCAGCCAt > 1:3522486/1‑35 (MQ=255) ctttttATTATCAGCATTTTCGCCCCCAGCCAttt < 1:2604466/33‑1 (MQ=255) cGTTTTATTATCAGCATTTTCGCCCCCAGCCAttt < 1:85618/35‑1 (MQ=255) cGTTTTATTATCAGCATTTTCGCCCCCAGCCAttt > 1:7350873/1‑35 (MQ=255) tttATTATCAGCATTTTACCCCCCAGCCATTTCTa < 1:11091590/35‑1 (MQ=38) ttattaTCAGCATTTTCGCCCCCAGCCATTTCTAc > 1:14149104/1‑35 (MQ=255) attatCAGCATTTTCGCCCCCAGCCATTTCTACaa > 1:13278833/1‑35 (MQ=255) attatCAGCATTTCCCCCCCCAGCCATTTCTACaa < 1:575961/35‑1 (MQ=38) ttatCAGCTTTTCCCCCCCCAGCCATTTCTACAAc < 1:10228319/35‑1 (MQ=25) ttatCAGCATTTCCCCCCCCAGCCATTTCTACAAc < 1:9981475/35‑1 (MQ=38) tatCAGCATTTTCGCCCCCAGCCATTTCTACAACg > 1:20411166/1‑35 (MQ=255) tatCAGCATTTTCGCCCCCAGCCATTTCTACAACg > 1:196722/1‑35 (MQ=255) tatCAGCATTTTCGCCCCCAGCCATTTCTACAACg > 1:6595293/1‑35 (MQ=255) atCAGCATTTTCGCCCCCAGCCATTTCTACAACGt > 1:14915940/1‑35 (MQ=255) atCAACATTTCCCCCCCCAGCCATTTCTACAACGt < 1:3297743/35‑1 (MQ=25) tCAGCTTTTTCCCCCCCAGCCATTTCTACAACGTg < 1:5442222/35‑1 (MQ=38) cAGCTTTTCCCCCCCCAGCCATTTCTACAACGTGa < 1:18111098/35‑1 (MQ=25) cAGCATTTTCGCCCCCAGCCATTTCTACAACGTGa > 1:19236409/1‑35 (MQ=255) cAGCATTTTCGCCCCCAGCCATTTCTACAACGTGa > 1:10660707/1‑35 (MQ=255) gCATTTTCGCCCCCAGCCATTTCTACAACGTGAAt > 1:1319022/1‑35 (MQ=255) gCATTTTCGCCCCCAGCCATTTCTACAACGTGAAt > 1:80549/1‑35 (MQ=255) gCATTTTCGCCCCCAGCCATTTCTACAACGCGAAt > 1:7648998/1‑35 (MQ=255) gcttttcgCCCCCAGCCAcaggtcgagatgaccag < 1:2976972‑M1/33‑18 (MQ=255) ctttttCGCCCCCAGCCATTTCTACAACGTGAAtt < 1:10505789/33‑1 (MQ=255) cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt > 1:17343553/1‑35 (MQ=255) cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt > 1:2062644/1‑35 (MQ=255) cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt > 1:452773/1‑35 (MQ=255) cATTTTCGCCCCCAGCCATTTCTACAAAGTGAAtt < 1:12138482/35‑1 (MQ=255) aTTTTCGCCCCCAGCCATTTCTACAACGTGAATTg > 1:7930241/1‑35 (MQ=255) aTTTTCGCCCCCAGCCATTTCTACAACGTGAATTg > 1:12446847/1‑35 (MQ=255) aTTTTCCCCCCCAGCCATTTCTACAACGTGAATTg < 1:11262031/35‑1 (MQ=255) aTTTTCCCCCCCAGCCATTTCTACAACGTGAATTg < 1:10011342/35‑1 (MQ=255) ttttCGCCCCCAGCCATTTCTACAACGTGAATTGt > 1:706238/1‑35 (MQ=255) tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa > 1:5705592/1‑35 (MQ=255) tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa < 1:6395315/35‑1 (MQ=255) tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa > 1:10358004/1‑35 (MQ=255) tttCCCCCCCAGCCATTTCTACAACGTGAATTGTa < 1:4965950/35‑1 (MQ=255) ctcGCCCCCAGCCAcaggtcgagatgaccagcggt < 1:9844940‑M1/34‑22 (MQ=255) tCGCCCCCAGCCATTTCTACAACGTGAATTGTAcc > 1:12225420/1‑35 (MQ=255) tCGCCCCCAGCCATTTCTACAACGTGAATTGTAcc > 1:18371799/1‑35 (MQ=255) ccccccccAGCCATTTCTACAACGTGAATTGTAcc < 1:19434045/32‑1 (MQ=255) cccccccagCCAcaggtcgagatgaccagcggtaa < 1:1663014‑M1/33‑24 (MQ=255) cNCCCCCAGCCATTTCTACAACGTGAATTGTACCn < 1:19891166/35‑1 (MQ=255) cGCTCCCAGCCAcaggtcgagatgaccagcggtaa < 1:5267305‑M1/35‑24 (MQ=255) cGCCCCCAGCCATTTCTACAACGTGAATTGTACCt > 1:4953837/1‑35 (MQ=255) cGCCCCCAGCCATTTCTACAACGTGAATTGTACCt > 1:14585632/1‑35 (MQ=255) cGCCCCAAGCCATTTCTACAACGTGAATTGTACCt < 1:3214409/35‑1 (MQ=255) gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg > 1:19956199/1‑35 (MQ=255) gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg > 1:16648800/1‑35 (MQ=255) gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg > 1:11847006/1‑35 (MQ=255) gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg > 1:14220466/1‑35 (MQ=255) ccccccaGCCAcaggtcgagatgaccagcggtaaa < 1:9341412‑M1/34‑25 (MQ=255) ccccccaGCCAcaggtcgagatgaccagcggtaaa < 1:1139372‑M1/34‑25 (MQ=255) ccccccAGCCATTTCTACAACGTGAATTGTACCTg < 1:16408565/34‑1 (MQ=255) ccccccAGCCATTTCTACAACGTGAATTGTACCTg < 1:16884693/34‑1 (MQ=255) acccccaGCCAcaggtcgagatgaccagcggtaaa < 1:10148076‑M1/34‑25 (MQ=255) cccccAGCCAcaggtcgagatgaccagcggtaaac < 1:4234132‑M1/35‑26 (MQ=255) cccccAGCCAcaggtcgagatgaccagcggtaaac < 1:8867781‑M1/35‑26 (MQ=255) cccccAGCCATTTCTACAACGTGAATTGTACCTGt > 1:253760/1‑35 (MQ=255) ccccAGCCAcaggtcgagatgaccagcggtaaact < 1:8356968‑M1/35‑27 (MQ=255) ccccAGCCAcaggtcgagatgaccagcggtaaact < 1:16577309‑M1/35‑27 (MQ=255) cccAGCCATTTCTACAACGTGAATTGTACCTGTcc < 1:3670443/35‑1 (MQ=255) cccAGCCATTTCTACAACGTGAATTGTACCTGTcc < 1:2271009/35‑1 (MQ=255) ccAGCCAcaggtcgagatgaccagcggtaaactgg < 1:9601908‑M1/35‑29 (MQ=255) ccAGCCAcaggtcgagatgaccagcggtaaactgg < 1:18163114‑M1/35‑29 (MQ=255) ccAGCCATTTCTACAACGTCAATTGTACCTGTCCg > 1:18976821/1‑35 (MQ=255) ccAGCAATTTCTACAACGTGAATTGTACCTGTCCg < 1:20216461/35‑1 (MQ=255) cAGCCAcaggtcgagatgaccagcggtaaaatggt > 1:13628533‑M1/1‑6 (MQ=255) cAGCCAcaggtcgagatgaccagcggtaaaatggt > 1:6897450‑M1/1‑6 (MQ=255) cAGCCATTTCTACAACGTGAATTGTACCTGTcctc > 1:3932384/1‑33 (MQ=255) aGCCAcaggtcgagatgaccagcggtaaactggtc < 1:17130524‑M1/35‑31 (MQ=255) aGCCAcaggtcgagatgaccagcggtaaactggtc < 1:3723687‑M1/35‑31 (MQ=255) aGCCAcaggtcgagatgaccagcgggaaactggtc > 1:385226‑M1/1‑5 (MQ=255) aGCCAcaggtcgagatgaccagcgggaaactggtc > 1:11420197‑M1/1‑5 (MQ=255) aGCCAcaggtcgagatgaccagcgggaaactggtc > 1:11620837‑M1/1‑5 (MQ=255) gCCAcaggtcgagatgaccagcggtaaactggtca < 1:15296884‑M1/35‑32 (MQ=255) gCCAcaggtcgagatgaccagcggtaaactggtca < 1:7735430‑M1/35‑32 (MQ=255) gCCAcaggtcgagatgaccagcgggaaactggtca > 1:20168428‑M1/1‑4 (MQ=255) gCCATTTCTACAACGTGAATTGTACCTGTCCGCaa < 1:12692018/35‑1 (MQ=255) ccAcaggtcgagatgaccagcggtaaactggtcag > 1:2342955‑M1/1‑3 (MQ=255) ccAcaggtcgagatgaccagcggtaaactggtcag < 1:15419607‑M1/35‑33 (MQ=255) ccAcaggtcgagatgaccagcggtaaactggtcag < 1:4176129‑M1/35‑33 (MQ=255) ccATTTCTACAACGTGAATTGTACCTGTCCGCAAt > 1:12243061/1‑35 (MQ=255) ccATTTCTACAACGTGAATTGTACCTGTCCGCAAt < 1:14540319/35‑1 (MQ=255) ccATTTCTACAACGTGAATTGTACCTGTCCGCAAt > 1:9119049/1‑35 (MQ=255) ccATTTCTACAACGTGAATTGTACCTGTCCGCAAt < 1:9549257/35‑1 (MQ=255) ccATTTCTACAACGTGAATTGTACCTGTCCGCAAt < 1:15044366/35‑1 (MQ=255) cacaggtcgagatgaccagcggtaaactggtcagt < 1:13664452‑M1/35‑34 (MQ=255) cacaggtcgagatgaccagcggtaaactggtcagt < 1:5629024‑M1/35‑34 (MQ=255) cATTTCTACAACGTGAATTGTACCTGTCCGCAATg > 1:7818697/1‑35 (MQ=255) cATTTCTACAACGTGAATTGTACCTGTCCGCAATg > 1:8162263/1‑35 (MQ=255) acaggtcgagatgaccagcggtaaactggtcagtg < 1:2730403‑M1/35‑35 (MQ=255) acaggtcgagatgaccagcggtaaactggtcagtg < 1:17822454‑M1/35‑35 (MQ=255) aTTTCTACAACGTGAATTGTACCTGTCCGCAATGa > 1:3415015/1‑35 (MQ=255) aTTTCTACAACGTGAATTGTACCTGTCCGCAATGa < 1:20426709/35‑1 (MQ=255) aTTTCTACAACGTGAATTGTACCTGTCCGCAATGa < 1:8930794/35‑1 (MQ=255) | CTACGTTTTATTATCAGCATTTTCGCCCCCAGCCATTTCTACAACGTGAATTGTACCTGTCCGCAATGA > REL606/1145416‑1145484 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |