New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 580467 =60 (0.580)4 (0.050) 3/36 NT 9.1% coding (851/3144 nt) cusA copper/silver efflux system, membrane component
?REL606 2397842 = 35 (0.450)coding (824/2646 nt) yfcTU predicted outer membrane export usher protein

TTTGCCGGATCGCAGGATCACCACCCCGCCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/580501‑580467
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccaACATAGTTAAAACCGTCGAAAATATCGGAATTGA  >  REL606/2397842‑2397875
                                                                     
TTTGCCGGATCGCAGGATCACCACCCCGCCCGCCA                                    >  1:17308442/1‑35
                     CACCCCGCCCGCCAACATAGTTAAAACCGTCGAAA               <  1:4438622/35‑1
                      ACCCCGCCCGCCAACATAGTTAAAACCGTCGAAAA              <  1:3422707/35‑1
                      ACCCCCCCCGCCAACATAGTTAAAACCGTCGAAAA              <  1:18321347/35‑1
                       CCCCGCCCGCCAACATAGTTAAAACCGTCGAAAAT             <  1:8046866/35‑1
                         gCGCCCGCCAACATAGTTAAAACCGTCGAAAATAT           <  1:5403952/34‑1
                           tCCCGCCAACATAGTTAAAACCGTCGAAAATATCG         <  1:9571015/34‑1
                           tCCCGCCAACATAGTTAAAACCGTCGAAAATATCG         <  1:13138839/34‑1
                           cCCCGCCAACATAGTTAAAACCGTCGAAAATATCG         <  1:8565160/34‑1
                           GCCCGCCAACATAGTTAAAACCGTCGAAAATATCG         <  1:4594204/35‑1
                           GCCCGCCAACATAGTTAAAACCGTCGAAAATATCG         <  1:18022228/35‑1
                            CCCGCCAACATAGTTAAAACCGTCGAAAATATCGG        <  1:5060415/35‑1
                            CCCGCCAACATAGTTAAAACCGTCGAAAATATCGG        <  1:19379034/35‑1
                            CCCGCCAACATAGTTAAAACCGTCGAAAATATCGG        <  1:18799099/35‑1
                             caGCCAACATAGTTAAAACCGTCGAAAATATCGGA       <  1:19218733/33‑1
                             CCGCCAACATAGTTAAAACCGTCGAAAATATCGGA       <  1:16677934/35‑1
                             CCGCCAACATAGTTAAAACCGTCGAAAATATCGGA       <  1:8319998/35‑1
                             CCGCCAACATAGTTAAAACCGTCGAAAATATCGGA       >  1:14031450/1‑35
                              ccCCAACATAGTTAAAACCGTCGAAAATATCGGAA      <  1:1763156/33‑1
                              ccCCAACATAGTTAAAACCGTCGAAAATATCGGAA      <  1:16420977/33‑1
                              CGCCAACATAGTTAAACCCGTCGAAAATATCGGAA      <  1:7302064/35‑1
                              CGCCAACATAGTTAAAACCGTCGAAAATATCGGAA      >  1:16882893/1‑35
                              CGCCAACATAGTTAAAACCGTCGAAAATATCGGAA      >  1:1807149/1‑35
                              CGCCAACATAGTTAAAACCGTCGAAAATATCGGAA      <  1:16510675/35‑1
                              CGCCAACATAGTTAAAACCGTCGAAAATATCGGAA      <  1:19232256/35‑1
                              CGCCAACATAGTTAAAACCGTCGAAAATATCGGAA      >  1:13698770/1‑35
                              CGCAAACATAGTTAAAACCGTCGAAAATATCGGAA      <  1:15435461/35‑1
                               GCCAACATAGTTAAAACCGTCGAAAATATCGGAAT     <  1:2083010/35‑1
                               GCCAACATAGTTAAAACCGTCGAAAATATCGGAAT     <  1:11588542/35‑1
                                CCAACATAGTTAAAACCGTCGAAAATATCGGAATT    <  1:5159219/35‑1
                                CCAACATAGTTAAAACCGTCGAAAATATCGGAATT    <  1:5341684/35‑1
                                CCAACATAGTTAAAACCGTCGAAAATATCGGAATT    >  1:10044970/1‑35
                                CCAACATAGTTAAAACCGTCGAAAATATCGGAATT    <  1:13104962/35‑1
                                CCAACATAGTTAAAACCGTCGAAAATATCGGAATT    >  1:20461718/1‑35
                                CCAACATAGTTAAAACCGTCGAAAATATAGGAATT    <  1:19949128/35‑1
                                 CAACATAGTTAAAACCGTCGAAAATATCGGAATTG   <  1:10952186/35‑1
                                 CAACATAGTTAAAACCGTCGAAAATATCGGAATTG   >  1:8158755/1‑35
                                  AACATAGTTAAAACCGTCGAAAATATCGGAATTGA  <  1:4434164/35‑1
                                  AACATAGTTAAAACCGTCGAAAATATCGGAATTGA  <  1:3908812/35‑1
                                  AACATAGTTAAAACCGTCGAAAATATCGGAATTGA  >  1:14827794/1‑35
                                  AACATAGTTAAAACCGTCGAAAATATCGGAATTGA  >  1:10649585/1‑35
                                                                     
TTTGCCGGATCGCAGGATCACCACCCCGCCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/580501‑580467
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccaACATAGTTAAAACCGTCGAAAATATCGGAATTGA  >  REL606/2397842‑2397875

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.