New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 924276 =93 (0.910)10 (0.100) 3/46 NT 12.3% coding (714/1431 nt) ybjT conserved protein with NAD(P)‑binding Rossmann‑fold domain
?REL606 = 1365457 53 (0.540)coding (824/978 nt) pspF DNA‑binding transcriptional activator

Only 100 of 112 total aligned reads displayed.

CTGCTGCATCTGAAACTCACGTAAATCCAGCGGCAGTGTTGGAAGCGAGGTGGTTTCTGAAACGGCGAT  >  REL606/1365423‑1365491
                                  |                                  
ctgctgCATCTGAAACTCACGTAAATCCAGCTGCa                                    >  1:10953447/1‑35 (MQ=255)
ctgctgCATCTGAAACTCACGTAAATCCAGCGGCa                                    >  1:16711157/1‑35 (MQ=255)
ctgctgCATCTGAAACTCACGTAAATCCAGCGGCa                                    <  1:17982616/35‑1 (MQ=255)
ctgctgCATCTGAAACTCACGTAAATCCAGCGGCa                                    >  1:3957221/1‑35 (MQ=255)
ctgctgCATCTGAAACTCACGTAAATCCAGCGGCa                                    >  1:18649170/1‑35 (MQ=255)
 tgctgcATCTGAAACTCACGTAAATCCAGCGGCAg                                   >  1:14795874‑M2/1‑34 (MQ=255)
 tgctgcATCTGAAACTCACGTAAATCCAGCGGCAg                                   >  1:6517882‑M2/1‑34 (MQ=255)
 tgctgcATCTGAAACTCACGTAAATCCAGCGGCAg                                   >  1:2105873‑M2/1‑34 (MQ=255)
 tgctgcATCTGAAACTCACGTAAATCCAGCGGCAg                                   >  1:11181858‑M2/1‑34 (MQ=255)
 tgctgcATCTGAAACTCACGTAAATCAAGCGGCAg                                   >  1:17865781‑M2/1‑34 (MQ=255)
  gctgcATCTGAAACTCACGTAAATCCAGCGGCAgt                                  <  1:16463003/35‑1 (MQ=255)
  gctgcATCTGAAACTCACGTAAATCCAGCGGCAgg                                  <  1:10567469‑M2/35‑3 (MQ=255)
  gctgcATCTGAAACTCACGTAAATCCAGCGGCAgg                                  <  1:16704328‑M2/35‑3 (MQ=255)
   ntgcATCTGAAACTCACGTAAATCCAGCGGCAggg                                 <  1:5885744‑M2/35‑4 (MQ=255)
   ctgcATCTGAAACTCACGTAAATCCAGCGGCAgtg                                 <  1:9316349/35‑1 (MQ=255)
   ctgcATCTGAAACTCACGTAAATCCAGCGGCAggg                                 <  1:4242041‑M2/35‑4 (MQ=255)
    tgcATCTGAAACTCACGTAAATCCAGCGGCGgggg                                <  1:1329955‑M2/35‑5 (MQ=255)
    tgcATCTGAAACTCACGTAAATCCAGCGGCAgtgt                                <  1:2031501/35‑1 (MQ=255)
    tgcATCTGAAACTCACGTAAATCCAGCGGCAgtgt                                <  1:13130502/35‑1 (MQ=255)
    tacatCTGAAACTCACGTAAATCCAGCGGCAgggg                                <  1:4813469‑M2/33‑5 (MQ=255)
     gcATCTGAAACTCACGTAAATCCAGCGGCAggggg                               <  1:4379610‑M2/35‑6 (MQ=255)
     gcATCTGAAACTCACGTAAATCCAGCGGCAggggg                               <  1:6607796‑M2/35‑6 (MQ=255)
     gcATCTGAAACTCACGTAAATCCAGCGGCAggggg                               <  1:2511394‑M2/35‑6 (MQ=255)
     gcATCTGAAACTCACGTAAATCCAGCGGCAGTGtt                               <  1:19156905/35‑1 (MQ=255)
      cATCTGAAACTCACGTAAATCCAGCGGCAgggggg                              <  1:8147442‑M2/35‑7 (MQ=255)
      cATCTGAAACTCACGTAAATCCAGCGGCAGTGTTg                              <  1:15942738/35‑1 (MQ=255)
       aTCTGAAACTCACGTAAATCCAGCGGCAgggggtg                             <  1:14353894‑M2/35‑8 (MQ=255)
       aTCTGAAACTCACGTAAATCCAGCGGCAggggggg                             <  1:2650634‑M2/35‑8 (MQ=255)
       aTCTGAAACTCACGTAAATCCAGCGGCAggggggg                             <  1:3821133‑M2/35‑8 (MQ=255)
       aTCTGAAACTCACGTAAATCCAGCGGCAggggggg                             <  1:14119579‑M2/35‑8 (MQ=255)
       aTCTGAAACTCACGTAAATCCAGCGGCAGTGTTgg                             <  1:575553/35‑1 (MQ=255)
       aTCTGAAACTCACGTAAATCCAGCGGCAGTGTTgg                             <  1:3974226/35‑1 (MQ=255)
       aTCTGAAACTCACGTAAATCCAGCGGCAGTGTTgg                             <  1:3923417/35‑1 (MQ=255)
        tCTGAAACTCACGTAAATCCAGCGGCAggggtggg                            <  1:16147306‑M2/35‑9 (MQ=255)
        tCTGAAACTCACGTAAATCCAGCGGCAgggggggg                            <  1:4453917‑M2/35‑9 (MQ=255)
        tCTGAAACTCACGTAAATCCAGCGGCAgggggggg                            <  1:13058951‑M2/35‑9 (MQ=255)
        tCTGAAACTCACGTAAATCCAGCGGCAgggggggg                            <  1:11728680‑M2/35‑9 (MQ=255)
        tCTGAAACTCACGTAAATCCAGCGGCAgggggggg                            <  1:19073614‑M2/35‑9 (MQ=255)
        tCTGAAACTCACGTAAATCCAGCGGCAGTGTTGGa                            <  1:4403710/35‑1 (MQ=255)
        tCTGAAACTCACGTAAATCCAGCGGCAGTGTTGGa                            <  1:16429053/35‑1 (MQ=255)
        tCTGAAACTCACGTAAATCCAGCGGCAGTGTTGGa                            <  1:3465058/35‑1 (MQ=255)
         cTGAAACTCACGTAAATCCAGCGGCAggggggggg                           <  1:1292494‑M2/35‑10 (MQ=255)
         cTGAAACTCACGTAAATCCAGCGGCAggggggggg                           <  1:14561847‑M2/35‑10 (MQ=255)
         cTGAAACTCACGTAAATCCAGCGGCAGTGTTGGaa                           <  1:17722986/35‑1 (MQ=255)
         cTGAAACTCACGTAAATCCAGCGGCAGTGTTGGaa                           <  1:17118147/35‑1 (MQ=255)
          tGAAACTCACGTAAATCCAGCGGCAggggtggggg                          <  1:5440217‑M2/35‑11 (MQ=255)
          tGAAACTCACGTAAATCCAGCGGCAgggggggggg                          <  1:13459544‑M2/35‑11 (MQ=255)
          tGAAACTCACGTAAATCCAGCGGCAgggggggggg                          <  1:6868658‑M2/35‑11 (MQ=255)
          tGAAACTCACGTAAATCCAGCGGCAGTGTTGGAAg                          <  1:5202757/35‑1 (MQ=255)
          tGAAACTCACGTAAATCCAGCGGCAGTGTTGGAAg                          <  1:4561933/35‑1 (MQ=255)
          tGAAACTCACGTAAATCCAGCGGCAGTGTTGGAAg                          <  1:9463025/35‑1 (MQ=255)
          agAAACTCACGTAAATCCAGCGGCAGTGTTGGAAg                          <  1:4942689/34‑1 (MQ=255)
           gAAACTCACGTAAATCCAGCGGCAGTGTTGGAAGc                         <  1:14504728/35‑1 (MQ=255)
            aaaCTCACGTAAATCCAGCGGCAGTGTTGGAAGCg                        <  1:7141725/35‑1 (MQ=255)
            aaaCTCACGTAAATCCAGCGGCAGTGTTGGAAGCg                        <  1:5347852/35‑1 (MQ=255)
             aaCTCACGTAAATCCAGCGGCAGTGTTGGAAGCGa                       <  1:12025390/35‑1 (MQ=255)
              aCTCACGTAAATCCAGCGGCAGTGTTGGAAGCGAg                      <  1:5389625/35‑1 (MQ=255)
              aCTAACGTAAATCCAGCGGCAGTGTTGGAAGCGAg                      <  1:9023039/35‑1 (MQ=255)
               cTCACGTAAATCCAGCGGCAGTGTTGGAAGCGAgg                     <  1:19648203/35‑1 (MQ=255)
               cTCACGTAAATCCAGCGGCAGTGTTGGAAGCGAgg                     <  1:12817871/35‑1 (MQ=255)
               cTCACGTAAATCCAGCGGCAGTGTTGGAAGCGAgg                     <  1:18461786/35‑1 (MQ=255)
               cTCACGTAAATCCAGCGGCAGTGTTGGAAGCGAgg                     <  1:17054807/35‑1 (MQ=255)
                tCACGTAAATCCAGCGGCAGTGTTGGAAGCGAggt                    <  1:6218949/35‑1 (MQ=255)
                tCACGTAAATCCAGCGGCAGTGTTGGAAGCGAggt                    <  1:16926556/35‑1 (MQ=255)
                tCACGTAAATCCAGCGGCAGTGTTGGAAGCGAggt                    <  1:14581983/35‑1 (MQ=255)
                 cACGTAAATCCAGCGGCAGTGTTGGAAGCGAggtg                   <  1:10804888/35‑1 (MQ=255)
                  aCGTAAATCCAGCGGCAGTGTTGGAAGCGAggtgg                  <  1:10151806/35‑1 (MQ=255)
                   cGTAAATCCAGCGGCAGTGTTGGAAGCGAggtggt                 <  1:9689722/35‑1 (MQ=255)
                    gTAAATCCAGCGGCAGTGTTGGAAGCGAGGTGGtt                <  1:9731840/35‑1 (MQ=255)
                     tAAATCCAGCGGCAGTGTTGGAAGCGAGGTGGttt               <  1:12978929/35‑1 (MQ=255)
                     tAAATCAAGCGGCAGTGTTGGAAGCGAGGTGGttt               <  1:12065886/35‑1 (MQ=255)
                     tAAATACAGCGGCAGTGTTGGAAGCGAGGTGGttt               <  1:18631786/35‑1 (MQ=255)
                      aaaTCCAGCGGCAGTGTTGGAAGCGAGGTGGTTTc              <  1:2792865/35‑1 (MQ=255)
                        aTCCAGCGGCAGTGTTGGAAGCGAGGTGGTTTCTg            <  1:5377141/35‑1 (MQ=255)
                         tCCAGCGGCAGTGTTGGAAGCGAGGTGGTTTCTGa           <  1:4320205/35‑1 (MQ=255)
                         tCCAGCGGCAGTGTTGGAAGCGAGGTGGTTTCTGa           <  1:18602003/35‑1 (MQ=255)
                         tCCAGCGGCAGTGTTGGAAGCGAGGTGGTTTCTGa           <  1:14122575/35‑1 (MQ=255)
                          ccAGCGGCAGTGTTGGAAGCGAGGTGGTTTCTGaa          <  1:5146874/35‑1 (MQ=255)
                            tctggCAGTGTTGGAAGCGAGGTGGTTTCTGAAAc        <  1:2251242/32‑1 (MQ=255)
                            aGCGGCAGTGTTGGAAGCGAGGTGGTTTCTGAAAc        <  1:19490334/35‑1 (MQ=255)
                            aGCGGCAGTGTTGGAAGCGAGGTGGTTTCTGAAAc        <  1:18623778/35‑1 (MQ=255)
                            aGCGGCAGTGTTGGAAGCGAGGTGGTTTCTGAAAc        <  1:17033730/35‑1 (MQ=255)
                             gCGGCAGTGTTGGAAGCGAGGTGGTTTCTGAAACg       <  1:5540149/35‑1 (MQ=255)
                             gCGGCAGTGTTGGAAGCGAGGTGGTTTCTGAAACg       <  1:27738/35‑1 (MQ=255)
                             gCGGCAGTGTTGGAAGCGAGGTGGTTTCTGAAACg       <  1:14090946/35‑1 (MQ=255)
                              cGGCAGTGTTGGAAGCGAGGTGGTTTCTGAAACgg      <  1:4558061/35‑1 (MQ=255)
                              cGGCAGTGTTGGAAGCGAGGTGGTTTCTGAAACgg      <  1:36563/35‑1 (MQ=255)
                              cGGCAGTGTTGGAAGCGAGGTGGTTTCTGAAACgg      <  1:13053265/35‑1 (MQ=255)
                              cGGCAGTGTTGGAAGCGAGGTGGTTTCTGAAACgg      <  1:9526651/35‑1 (MQ=255)
                               ggCAGTGTTGTAAGCGAGGTGGTTTCTGAAACGGc     <  1:963051/35‑1 (MQ=255)
                               ggCAGTGTTGGAAGCGAGGTGGTTTCTGAAACGGc     <  1:19355155/35‑1 (MQ=255)
                                gCAGTGTTGGAAGCGAGGTGGTTTCTGAAACGGCg    <  1:10065101/35‑1 (MQ=255)
                                gCAGTGTTGGAAGCGAGGTGGTTTCTGAAACGGCg    <  1:1731037/35‑1 (MQ=255)
                                gCAGTGTTGGAAGCGAGGTGGGTTCTGAAAAgggg    >  1:15883003/1‑33 (MQ=37)
                                 cAGTGTTGGAAGCGAGGTGGTTTCTGAAACGGCGa   <  1:3395108/35‑1 (MQ=255)
                                 cAGTGTTGGAAGCGAGGTGGGTTTTGAAAAggggg   >  1:6788742/1‑32 (MQ=19)
                                  aGTGTTGGAAGCGAGGTGGTTTCTGAAACGGCGaa  >  1:7753131/1‑34 (MQ=255)
                                  aGTGTTGGAAGCGAGGTGGTTTCTGAAACGGCGaa  >  1:6627758/1‑34 (MQ=255)
                                  aGTGTTGGAAGCGAGGTGGTTTCTGAAACGGCGAt  <  1:15861831/35‑1 (MQ=255)
                                  aGTGTTGGAAGCGAGGTGGTTTCTGAAACGGCGAt  <  1:17506118/35‑1 (MQ=255)
                                  |                                  
CTGCTGCATCTGAAACTCACGTAAATCCAGCGGCAGTGTTGGAAGCGAGGTGGTTTCTGAAACGGCGAT  >  REL606/1365423‑1365491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.