New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3579044 = | 7 (0.070) | 29 (0.320) | 6/42 | NT | 37.4% | intergenic (+703/‑174) | gor/arsR | glutathione reductase/DNA‑binding transcriptional repressor |
? | REL606 | 3912266 = | 91 (1.010) | intergenic (+46/‑94) | ilvL/ilvG | ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit |
TCTGAATCAGGACGTAAAAAAACCGACTTTGCGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3579080‑3579044 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGTTTTTTTTGACCTTAAAAACATAACCGAGGA > REL606/3912266‑3912299 TCTGAATCAGGACGTAAAAAAACCGACTTTGCGTC > 1:2295140/1‑35 TCTGAATCAGGACGTAAAAAAACCGACTTTGCGTC < 1:3347214/35‑1 TCTGAATCAGGACGTAAAAAAACCGACTTTGCGTC < 1:3431910/35‑1 CTGAATCAGGACGTAAAAAAACCGACTTTGCGTCt > 1:1986585/1‑34 CTGAATCAGGACGTAAAAAAACCGACTTTGCGTCG > 1:20117435/1‑35 CTGAATCAGGACGTAAAAAAACCGACTTTGCGTCG < 1:619678/35‑1 CTGAATCAGGACGTAAAAAAACCGACTTTGCGTCG > 1:7161023/1‑35 TGAATCAGGACGTAAAAAACCCGACTTTGCGTCGG < 1:19252102/35‑1 TGAATCAGGACGTAAAAAAACCGACTTTGCGTCGG > 1:11365532/1‑35 TGAATCAGGACGTAAAAAAACCGACTTTGCGTCGG > 1:618078/1‑35 TGAATCAGGACGTAAAAAAACCGACTTTGCGTCGG > 1:13851874/1‑35 GAATCAGGGCGTAAAAAAACCGACTTTGCGTCGGG > 1:18917529/1‑35 GAATCAGGACGTAAAAAAACCGACTTTGCGTCGGG > 1:5650407/1‑35 GAATCAGGACGTAAAAAAACCGACTTTGCGTCGGG > 1:18850935/1‑35 AATCAGGACGTAAAAAAACCGACTTTGCGTCGGGG > 1:11958133/1‑35 AATCAGGACGTAAAAAAACCGACTTTGCGTCGGGG > 1:12905958/1‑35 AATCAGGACGTAAAAAAACCGACTTTGCGTCGGGG > 1:17803365/1‑35 AATCAGGACGTAAAAAAACCGACTTTGCGTCGGGG > 1:17621216/1‑35 CAGGACGTAAAAAAACCGACTTTGCGTCGGGGGTT > 1:22503/1‑35 CAGGACGTAAAAAAACCGACTTTGCGTCGGGGGTT > 1:10228574/1‑35 CAGGACGTAAAAAAACCGACTTTGCGTCGGGGGTT > 1:10391893/1‑35 AGGACGTAAAAAAACCGACTTTGCGTCGGGGGTTT > 1:13297866/1‑35 GGACGTAAAAAAACCGACTTTGCGTCGGGGGTTTT > 1:7874944/1‑35 GGACGTAAAAAAACCGACTTTGCGTCGGGGGTTTT > 1:2228251/1‑35 gatGTAAAAAAACCGACTTTGCGTCGGGGGTTTTT > 1:16029394/4‑35 gatGTAAAAAAACCGACTTTGCGTCGGGGGTTTTT > 1:13668181/4‑35 GACGTAAAAAAACCGACTTTGCGTCGGGGTTTTTT > 1:4465072/1‑35 GACGTAAAAAAACCGACTTTGCGTCGGGGTTTTTT > 1:12803477/1‑35 GACGTAAAAAAACCGACTTTGCGTCGGGGGTTTTT > 1:6332442/1‑35 GACGTAAAAAAACCGACTTTGCGTCGGGGGTTTTT > 1:3349282/1‑35 atGTAAAAAAACCGACTTTGCGTCGGGGGTTTTTT > 1:14543029/3‑35 ACGTAAAAAAACCGACTTTGCGTCGGGGTTTTTTT > 1:3779109/1‑35 ACGTAAAAAAACCGACTTTGCGTCGGGGTTTTTTT > 1:17132352/1‑35 ACGTAAAAAAACCGACTTTGCGTCGGGGTTTTTTT > 1:19103346/1‑35 ACGTAAAAAAACCGACTTTGCGTCGGGGGTTTCTT > 1:20364417/1‑35 tGTAAAAAAACCGACTTTGCGTCGGGGTTTTTTTT > 1:17608776/2‑35 tGTAAAAAAACCGACTTTGCGTCGGGGTTTTTTTT > 1:10548250/2‑35 tGTAAAAAAACCGACTTTGCGTCGGGGTTTTTTTT > 1:5616394/2‑35 tGTAAAAAAACCGACTTTGCGTCGGGGGTTTTTTT > 1:18016948/2‑35 CGTAAAAAAACCGACTTTGCGTCGGGGGTTTTTTT > 1:4512638/1‑35 GTAAAAAAACCGACTTTGCGTCGGGGTTTTTTTTT > 1:5777297/1‑35 GTAAAAAAACCGACTTTGCGTCGGGGGTTTTTTTT > 1:4203940/1‑35 GTAAAAAAACCGACTTTGCGTCGGGGGTTTTTTTT > 1:2636996/1‑35 GTAAAAAAACCGACTTTGCGTCGGGGGGTTTTTTT > 1:6647285/1‑35 TAAAAAAACCGACTTTGCGTCGGGGTTTTTTTTTt > 1:13735473/1‑34 TAAAAAAACCGACTTTGCGTCGGGGTTTTTTTTTt > 1:1295048/1‑34 TAAAAAAACCGACTTTGCGTCGGGGTTTTTTTTTt > 1:20434416/1‑34 TAAAAAAACCGACTTTGCGTCGGGGGTTTTTTTTt > 1:1403928/1‑34 TAAAAAAACCGACTTTGCGTCGGGGGTTTTTTTTt > 1:2517252/1‑34 AAAAAACCGACTTTGCGTCGGGGGTTTTTTTTttc > 1:10458309/1‑32 CGGGGGTTTTTTTTGACCTTAAAAACATAACCGAG > 1:3465158/1‑35 CGGGGGTTTTTTTTGACCTTAAAAACATAACCGAG < 1:7688306/35‑1 GGGGGTTTTTTTTGACCTTAAAAACATAACCGAGG > 1:13181208/1‑35 GGGGCTTTTTTTTGACCTTAAAAACATAACCGAGG > 1:13115441/1‑35 GGGGTTTTTTTTGACCTTAAAAACATAACCGAGGA < 1:5179373/35‑1 GGGGTTTTTTTTGACCTTAAAAACATAACCGAGGA < 1:15913581/35‑1 TCTGAATCAGGACGTAAAAAAACCGACTTTGCGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3579080‑3579044 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGTTTTTTTTGACCTTAAAAACATAACCGAGGA > REL606/3912266‑3912299 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |