New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 38998364 (0.620)8 (0.100) 5/36 NT 10.3% coding (575/1374 nt) proY predicted cryptic proline transporter
?REL606 = 3813056 92 (1.190)intergenic (‑137/‑797) ivbL/emrD ilvB operon leader peptide/multidrug efflux system protein

Only 100 of 197 total aligned reads displayed.

CACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGC  >  REL606/3813022‑3813090
                                  |                                  
cACGTTTTGTACTGAATTGCAGATAACAAAAAAcc                                    >  1:17132132/1‑35 (MQ=255)
cACGTTTTGTACTGAATTGCAGATAACAAAAAAcc                                    <  1:12409154/35‑1 (MQ=255)
cACGTGTTGTACTGAATTGCAGATAACAAAAAAcc                                    <  1:6546082/35‑1 (MQ=255)
 aCGTTTTGTACTGAATTGCAGATAACAAAAAACCc                                   >  1:16082044‑M2/1‑34 (MQ=255)
 aCGTTTTGTACTGAATTGCAGATAACAAAAAACCc                                   <  1:8014081‑M2/35‑2 (MQ=255)
 aCGTTTTGTACTGAATTGCAGATAACAAAAAACCc                                   >  1:11032337‑M2/1‑34 (MQ=255)
  cGTTTTGTACTGAATTGCAGATAACAAAAAACCcc                                  >  1:16802864‑M2/1‑33 (MQ=255)
  cGTTTTGTACTGAATTGCAGATAACAAAAAACCcc                                  >  1:16612700‑M2/1‑33 (MQ=255)
  cGTTTTGTACTGAATTGCAGATAACAAAAAACCcc                                  >  1:18741165‑M2/1‑33 (MQ=255)
  cGTTTTGTACTGAATTGCAGATAACAAAAAACCcc                                  <  1:8381026‑M2/35‑3 (MQ=255)
  cGTTTTGTACTGAATTGCAGATAACAAAAAACCcc                                  >  1:1060720‑M2/1‑33 (MQ=255)
  cGTTTTGTACTGAATTGCAGATAACAAAAAACCcc                                  >  1:2379911‑M2/1‑33 (MQ=255)
   gTTTTGTACTGAATTGCAGATAACAAAAAACCccg                                 <  1:6794658‑M2/35‑4 (MQ=255)
   gTTTTGTACTGAATTGCAGATAACAAAAAACCccg                                 <  1:5471956‑M2/35‑4 (MQ=255)
   gTTTTGTACTGAATTGCAGATAACAAAAAACCccg                                 <  1:5359911‑M2/35‑4 (MQ=255)
   gTTTTGTACTGAATTGCAGATAACAAAAAACCccg                                 <  1:19743797‑M2/35‑4 (MQ=255)
    ttttGTACTGAATTGCAGATAACAAAAAACCccgc                                >  1:1141607‑M2/1‑31 (MQ=255)
     tttGTACTGAATTGCAGATAACAAAAAACCcctcc                               <  1:1829410‑M2/35‑6 (MQ=255)
     tttGTACTGAATTGCAGATAACAAAAAACCccgcc                               <  1:12547245‑M2/35‑6 (MQ=255)
      ttGTACTTAATTGCAGATAACAAAAAACCccgccg                              <  1:6496409‑M2/35‑7 (MQ=255)
      ttGTACTGAATTGCAGATAACAAAAAACCccgccg                              <  1:13395831‑M2/35‑7 (MQ=255)
      ttGTACTGAATTGCAGATAACAAAAAACCccgccg                              <  1:17451156‑M2/35‑7 (MQ=255)
      ttGTACTGAATTGCAGATAACAAAAAACCccgccg                              <  1:18907714‑M2/35‑7 (MQ=255)
       tGTACTGAATTGCAGATAACAAAAACCCCCGCCgg                             <  1:14739494/35‑1 (MQ=255)
       tGTACTGAATTGCAGATAACAAAAAACCCCGCCgg                             >  1:3716523/1‑35 (MQ=255)
       tGTACTGAATTGCAGATAACAAAAAACCCCGCCgg                             <  1:70538/35‑1 (MQ=255)
       tGTACTGAATTGCAGATAACAAAAAACCCCGCCgg                             <  1:20553380/35‑1 (MQ=255)
        gTACTGAATTGCAGATAACAAAAAACCCCGCCGGa                            >  1:2661097/1‑35 (MQ=255)
           cTGAATTGCAGATAACAAAAAACCCCGCCGGAGCg                         >  1:13723523/1‑35 (MQ=255)
           cTGAATTGCAGATAACAAAAAACCCCGCCGGAGCg                         <  1:15501362/35‑1 (MQ=255)
            tGAATTGCAGATAACAAAAAACCCCTCCGGAGCGa                        >  1:11143756/1‑35 (MQ=255)
            tGAATTGCAGATAACAAAAAACCCCGCCGGAGCGa                        >  1:8068945/1‑35 (MQ=255)
            tGAATTGCAGATAACAAAAAACCCCGCCGGAGCGa                        >  1:1261581/1‑35 (MQ=255)
             gAATTGCAGATAACAAAAAACCCCGCCGGAGCGAg                       >  1:11905481/1‑35 (MQ=255)
             gAATTGCAGATAACAAAAAACCCCGCCGGAGCGAg                       <  1:10758279/35‑1 (MQ=255)
             gAATTGCAGATAACAAAAAACCCCGCCGGAGCGAg                       >  1:4808929/1‑35 (MQ=255)
             gAATTGCAGATAACAAAAAACCCCGCCGGAGCGAg                       >  1:10101489/1‑35 (MQ=255)
              aaTTGCAGATAACAAAAAACCCCGCCGGAGCGAgg                      <  1:19068743/35‑1 (MQ=40)
              aaTTGCAGATAACAAAAAACCCCGCCGGAGCGAgg                      >  1:9326474/1‑35 (MQ=40)
              aaTTGCAGATAACAAAAAACCCCGCCGGAGCGAgg                      >  1:11246256/1‑35 (MQ=40)
              aaTTGCAGATAACAAAAAACCCCGCCGGAGCGAgg                      >  1:8847733/1‑35 (MQ=40)
               aTTTCAGATAACAAAAAACCCCGCCGGAGCGAGGt                     >  1:19814805/1‑35 (MQ=12)
               aTTGCAGATAACAAAAACCCCCGCCGGAGCGAGGt                     <  1:14265559/35‑1 (MQ=255)
               aTTGCAGATAACAAAAAACCCCGCCGGAGCGAGGt                     >  1:3111508/1‑35 (MQ=38)
               aTTGCAGATAACAAAAAACCCCGCCGGAGCGAGGt                     >  1:15778724/1‑35 (MQ=38)
               aTTGCAGATAACAAAAAACCCCGCCGGAGCGAGGt                     >  1:11378309/1‑35 (MQ=38)
               aTTGCAGATAACAAAAAACCCCGCCGGAGCGAGGt                     <  1:4519489/35‑1 (MQ=38)
                ttGCAGATAACAAAAAACCCCGCCGGAGCGAGGtt                    >  1:3362093/1‑35 (MQ=35)
                 tGCAGATAACAAAAAACCCCGCCGGAGCGAGGttt                   >  1:10956926/1‑35 (MQ=32)
                 tGCAGATAACAAAAAACCCCGCCGGAGCGAGGttt                   >  1:8969621/1‑35 (MQ=32)
                  gCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTc                  >  1:10313244/1‑35 (MQ=32)
                  gCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTc                  <  1:20474122/35‑1 (MQ=32)
                  gCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTc                  >  1:4580238/1‑35 (MQ=32)
                  gCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTc                  <  1:18440579/35‑1 (MQ=32)
                  gCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTc                  >  1:16962354/1‑35 (MQ=32)
                   cAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCg                 >  1:424857/1‑35 (MQ=35)
                    aGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGt                >  1:12847370/1‑35 (MQ=38)
                    aGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGt                <  1:4420031/35‑1 (MQ=38)
                    aGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGt                <  1:16215408/35‑1 (MQ=38)
                     taTAACAAAAAACCCCGCCGGAGCGAGGTTTCGTc               >  1:11518923/2‑35 (MQ=255)
                     gATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTc               <  1:5109262/35‑1 (MQ=40)
                     gATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTc               >  1:14457612/1‑35 (MQ=40)
                     gATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTc               >  1:14719978/1‑35 (MQ=40)
                     gATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTc               <  1:2795869/35‑1 (MQ=40)
                     gATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTc               >  1:16299565/1‑35 (MQ=40)
                      aTAACAAAAAACCCCGCTGGAGCGAGGTTTCGTCa              >  1:10090066/1‑35 (MQ=255)
                      aTAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCa              >  1:19966431/1‑35 (MQ=255)
                       tAACAAAAGACCccgccgttgctccacaggttatg             >  1:3453930‑M2/1‑12 (MQ=255)
                       tAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAg             >  1:17014849/1‑35 (MQ=255)
                        aaCAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGt            <  1:15045528/35‑1 (MQ=255)
                         aCAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTc           <  1:17639496/35‑1 (MQ=255)
                         aCAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTc           >  1:4926333/1‑35 (MQ=255)
                          cAAAAAACCccgccgttgctccacaggttatgaat          >  1:7720340‑M2/1‑9 (MQ=255)
                          cAAAAAAACccgccgttgctccacaggttatgaat          >  1:3818064‑M2/1‑9 (MQ=255)
                           taaagacCccgccgttgctccacaggttatgaata         >  1:12143159‑M2/2‑8 (MQ=255)
                           aaaaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGc         >  1:13602604/1‑35 (MQ=255)
                           aaaaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGc         >  1:18109573/1‑35 (MQ=255)
                           aaaaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGc         >  1:3214272/1‑35 (MQ=255)
                           aaaaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGc         >  1:1946022/1‑35 (MQ=255)
                            aaaacCCCCGCCGGAGCGAGGTTTCGTCAGTGGcc        <  1:11984889/35‑1 (MQ=18)
                            aaaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGcc        >  1:16027298/1‑35 (MQ=255)
                             aaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCt       <  1:18509234/35‑1 (MQ=255)
                             aaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCt       >  1:4149329/1‑35 (MQ=255)
                              aaaCCCCGCCGGAGCGATGTTTCGTCAGTCGCCTg      >  1:6047985/1‑35 (MQ=255)
                               gacCccgccgttgctccacaggttatgaataccgg     >  1:6717725‑M2/2‑4 (MQ=255)
                               acccccGCCGGAGCGAGGTTTCGTCAGTCGCCTGc     <  1:3523979/33‑1 (MQ=255)
                               acccccGCCGGAGCGAGGTTTCGTCAGTCGCCTGc     <  1:13924630/33‑1 (MQ=255)
                               aaCCccgccgttgctccacaggttatgaataccgg     >  1:7252045‑M2/1‑4 (MQ=255)
                               aaCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGc     >  1:1458404/1‑35 (MQ=255)
                               aaCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGc     >  1:7973542/1‑35 (MQ=255)
                               aaCCCCGCCGGAGCGAGGTTTCGTCAGGCGCCTgt     >  1:8248176/1‑34 (MQ=255)
                                aCCccgccgttgctccacaggttatgaataccggt    >  1:19367179‑M2/1‑3 (MQ=255)
                                aCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCg    <  1:8664202/35‑1 (MQ=255)
                                aCCCCGCCGGAGCGAGGTTTCGTCAGGCGCCTGCg    >  1:1171489/1‑35 (MQ=255)
                                 gcccgccgttgctccacaggttatgaataccggtc   >  1:19253509‑M2/2‑2 (MQ=255)
                                 ccccgccgttgctccacaggttatgaataccggtc   >  1:5652978‑M2/1‑2 (MQ=255)
                                 ccccGCCGGAGCGAGGTTTCGTCAGTCGCCTGCgg   <  1:2875354/35‑1 (MQ=255)
                                 acccgccgttgctccacaggttatgaataccggtc   >  1:2686075‑M2/2‑2 (MQ=255)
                                 acccgccgttgctcaacaggttatgaataccggtc   >  1:8444178‑M2/2‑2 (MQ=255)
                                  cccGCCGGATCGAGGTTTCGTCAGTCGCCTGCGGc  >  1:3887744/1‑35 (MQ=255)
                                  |                                  
CACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGC  >  REL606/3813022‑3813090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.