New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2288961 =52 (0.510)12 (0.140) 4/40 NT 19.0% coding (1909/3753 nt) yfaL adhesin
?REL606 = 3625456 59 (0.690)pseudogene (7/738 nt) yhjQ b3534; cell division protein (chromosome partitioning ATPase)

Only 100 of 219 total aligned reads displayed.

GTGATGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCATTCACCAATCCCCT  >  REL606/3625422‑3625490
                                  |                                   
 tGATGGTTGTTGTCCCCACGCCTCCCCGCCCCCCC                                    <  1:9259149‑M1/35‑1 (MQ=255)
   aTGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTG                                  <  1:14295100‑M1/35‑1 (MQ=255)
    tGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCctg                                 <  1:12126136‑M1/35‑4 (MQ=255)
    tGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGC                                 <  1:15659230‑M1/35‑1 (MQ=255)
     ggTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCa                                >  1:15790644/1‑35 (MQ=255)
     ggTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCa                                >  1:5908933/1‑35 (MQ=255)
       ttgttgTCCCCACGCCTCCCCGCTCCCCCCGCAAt                              >  1:12672660/1‑35 (MQ=38)
         gttgtCCCCACGCCTCCCCGCCCCCCCTGCAATcc                           <  1:16468131/35‑1 (MQ=255)
         gttgtCCCCACGCCTCCCCGCCCCCCCTGCAATcc                           >  1:18515965/1‑35 (MQ=255)
          ttgtCCCCACGCCTCCCCGCCCCCCCTGCAATccc                          <  1:6867857/35‑1 (MQ=255)
            gtCCCCACGCCTCCCCGCCCCCCCTGCAATCCCAg                        >  1:13713402/1‑35 (MQ=255)
              ccccCCCCCCCCCCCCCCCCCCTGCCATACCCAgg                       <  1:9678019/35‑2 (MQ=2)
               cccGCGCCTCCCCCCCCCCGCCACAATTCTAGTag                     <  1:4857769/35‑2 (MQ=12)
               cccACGCCTCCCCGCCCCCCCTGCAATCCCAGTAc                     >  1:8116624/1‑35 (MQ=255)
               cccACGCCTCCCCGCCCCCCCTGCAATCCCAGTAc                     <  1:17229695/35‑1 (MQ=255)
                ccACGCCTCCCCGCCCCCCCTGCAATCCCAGTACg                    >  1:12998095/1‑35 (MQ=255)
                ccACGCCTCCCCGCCCCCCCTGCAATCCCAGTACg                    >  1:12582013/1‑35 (MQ=255)
                ccACGCCTCCCCGCCCCCCCTGCAATCCCAGTACg                    <  1:8975921/35‑1 (MQ=255)
                ccAAGCCTCCCCGCACCCCCTGCAATCCCAGTACg                    <  1:14454292/35‑1 (MQ=255)
                 cACGCCTCCCCGCCCCCCCTGCAATCCCAGTACgg                   >  1:7501651/1‑35 (MQ=255)
                 cACGCCTCCCCGCCCCCCCTGCAATCCCAGTACgg                   <  1:7744756/35‑1 (MQ=255)
                 cACGCCTCCCCGCCCCCCCTGCAATCCCAGTACgg                   <  1:19775017/35‑1 (MQ=255)
                 cACGCCTCCCCGCCCCCCCTGCAATCCCAGTACgg                   >  1:19932768/1‑35 (MQ=255)
                  aCGCCTCCCCGCCCCCCCTGCAATCCCAGTACGGc                  >  1:1917258/1‑35 (MQ=255)
                    gCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCa                >  1:1164153/1‑35 (MQ=255)
                    gCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCa                >  1:14927046/1‑35 (MQ=255)
                    gCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCa                <  1:7086372/35‑1 (MQ=255)
                     ccTCCCCCCCCCCCCTGCcattgaaacggatcccg                <  1:8674388‑M1/35‑18 (MQ=255)
                      cTCCCCGCCCCCCCTGCAATCCCAGTACGGCCAtt              >  1:17119849/1‑35 (MQ=255)
                      cTCCCCGCCCCCCCTGCAATCCCAGTACGGCCAtt              >  1:20456641/1‑35 (MQ=255)
                      cTCCCCCCCCCCCCTGCcattgaaacggatcccgg               <  1:1308403‑M1/35‑19 (MQ=255)
                       cccccgCCCCCCctgccattcaacggttgaaacca              >  1:3913297‑M2/2‑12 (MQ=255)
                       acccccCCCCCCCTGCcattgaaacggatcccggt              <  1:6293306‑M1/34‑20 (MQ=255)
                        ccccGCCCCCCctgccattcaacggttgaaaccag             >  1:9786142‑M2/1‑11 (MQ=255)
                        ccccGCCCCCCctgccaatttcggatgcggtgcga             >  1:9425154‑M2/1‑11 (MQ=255)
                        ccccCCCCCCCctgccgcagaagttgattgcgatg             >  1:16499908‑M2/1‑11 (MQ=255)
                        ccccCCCCCCCctgccacttcaccgtcggcgcgca             >  1:2731959‑M2/1‑11 (MQ=255)
                        ccccCCCCCCCCTGCcattgaaacggatcccggtg             <  1:9634289‑M1/35‑21 (MQ=255)
                        ccccCCCCCCCCTGCcattgaaacggatcccggtg             <  1:10625689‑M1/35‑21 (MQ=255)
                         cccGCCCCCCctgccattcaacggttgaaaccagc            >  1:6484225‑M2/1‑10 (MQ=255)
                         cccGCCCCCCCTGCAATCCCAGTACGGCCATTCAc           >  1:5383051/1‑35 (MQ=255)
                         cccCCCCCCCctgccacttcaccgtcggcgcgcat            >  1:3450120‑M2/1‑10 (MQ=255)
                         cccCCCCCCCctgccacttcaccgtcggcgcgcat            >  1:7168522‑M2/1‑10 (MQ=255)
                         cccCCCCCCCctgccacttcaccgtcggcgcgcat            >  1:19013933‑M2/1‑10 (MQ=255)
                         cccCCCCCCCCTGCcattgaaacggatcccggtgc            <  1:5198390‑M1/35‑22 (MQ=255)
                          ccGCCGCCCctgccattcaacggttgaaaccagcc           >  1:5701936‑M2/1‑9 (MQ=255)
                          ccGCCCCCCctgccaatgtcggatgcggtgcgagc           >  1:4660374‑M2/1‑9 (MQ=255)
                          ccGCCCCCCCTGCcattgaaacggatcccggtgca           <  1:13469155‑M1/35‑23 (MQ=255)
                          ccGCCCCCCCTGCAATCCCAGTACGGCCATTCAcc          <  1:3580360/35‑1 (MQ=255)
                          ccCCCCCCCctgccaatgtcggatgcggtgcgagc           >  1:14016257‑M2/1‑9 (MQ=255)
                           ccccccccctgccgcagaagttgattgcgatggaa          >  1:16029725‑M2/3‑8 (MQ=255)
                           ccccccccctgccacttcaccgtcggcgcgcattt          >  1:12921888‑M2/3‑8 (MQ=255)
                           ccccccccctgccaatgtcggatgcggtgcgagcg          >  1:5798921‑M2/3‑8 (MQ=255)
                           ccccccccctgCcattgaaacggatcccggtgcaa          <  1:8891533‑M1/33‑24 (MQ=255)
                           ccccccccctgCcattgaaacggatcccggtgcaa          <  1:17371525‑M1/33‑24 (MQ=255)
                           cGCCCCTCctgccattcaacggttgaaaccagcct          >  1:18222591‑M2/1‑8 (MQ=255)
                           cGCCCCCCctgccaatgtcggatgcggtgcgagcg          >  1:8504143‑M2/1‑8 (MQ=255)
                           cGCCCCCCCTGCAATCCCAGTACGGCCATTCACCa         >  1:4338125/1‑35 (MQ=255)
                            tgcccccctgccattcaacggttgaaaccagcctg         >  1:10844572‑M2/3‑7 (MQ=255)
                            gCCCCCCCTGCAATCCCAGTACGGCCATTCACCaa        >  1:7252871/1‑35 (MQ=255)
                            cccccccctgccattcaacggttgaaaccagcctg         >  1:15180992‑M2/2‑7 (MQ=255)
                            cccccccctGCcattgaaacggatcccggtgcaag         <  1:2482922‑M1/34‑25 (MQ=255)
                             ccccccctgccgcagaagttgattgcgatggaacc        >  1:4958347‑M2/1‑6 (MQ=255)
                             ccccccctgccacttcaccgtcggcgcgcatttca        >  1:19346849‑M2/1‑6 (MQ=255)
                             cccccccTGCcattgaaacggatcccggtgcaagt        <  1:13869767‑M1/35‑26 (MQ=255)
                              ccgccctgccgcagaagttgattgcgatggaacct       >  1:3020323‑M2/1‑5 (MQ=255)
                              cccccctgccacttcaccgtcggcgcgcatttcaa       >  1:13638740‑M2/1‑5 (MQ=255)
                              cccccctgccaatgtcggatgcggtgcgagcgcct       >  1:5353572‑M2/1‑5 (MQ=255)
                              ccccccTGCcattgaaacggatcccggtgcaagtg       <  1:10130357‑M1/35‑27 (MQ=255)
                              ccccccTGCcattgaaacggatcccggtgcaagtg       <  1:15353296‑M1/35‑27 (MQ=255)
                              ccccccTGCcattgaaacggatcccggtgcaagtg       <  1:376980‑M1/35‑27 (MQ=255)
                              ccccccTGCAATCCCAGTCCGGCCATTCACCAATc      <  1:7863695/35‑1 (MQ=255)
                               ccccctgccgcagaagttgattgcgatggaacctc      >  1:16779454‑M2/1‑4 (MQ=255)
                               ccccctgccgcagaagttgattgcgatggaacctc      >  1:1693778‑M2/1‑4 (MQ=255)
                               ccccctgccattcaacggttgaaaccagcctgcta      >  1:8604599‑M2/1‑4 (MQ=255)
                               ccccctgccattcaacggttgaaaccagcctgcta      >  1:15460511‑M2/1‑4 (MQ=255)
                               ccccctgccacttcaccgtcggcgcgcatttcaat      >  1:20425662‑M2/1‑4 (MQ=255)
                               ccccctgccaatgtcggatgcggtgcgagcgcctt      >  1:20078317‑M2/1‑4 (MQ=255)
                               cccccTGCAATCCCAGTACGGCCATTCACCAATcc     >  1:13455153/1‑35 (MQ=255)
                                cccctgccgcagaagttgattgcgatggaacctcc     >  1:10983670‑M2/1‑3 (MQ=255)
                                cccctgccgcagaagttgattgcgatggaacctcc     >  1:12878756‑M2/1‑3 (MQ=255)
                                cccctgccacttcaccgtcggcgcgcatttcaata     >  1:6222435‑M2/1‑3 (MQ=255)
                                cccctgccacttcaccgtcggcgcgcatttcaata     >  1:10809731‑M2/1‑3 (MQ=255)
                                cccctgccaatgtcggatgcggtgcgagcgcctta     >  1:11311602‑M2/1‑3 (MQ=255)
                                ccccTGCcattgaaacggatcccggtgcaagtgcc     <  1:17840025‑M1/35‑29 (MQ=255)
                                ccccTGCcattgaaacggatcccggtgcaagtgcc     <  1:18666712‑M1/35‑29 (MQ=255)
                                 ccctgccattcaacggttgaaaccagcctgctact    >  1:16212311‑M2/1‑2 (MQ=255)
                                 ccctgccaatgtcggatgcggtgcgagcgccttat    >  1:5950794‑M2/1‑2 (MQ=255)
                                  cctgccgcagaagttgattgcgatggaccctccat   >  1:14411894‑M2/1‑1 (MQ=255)
                                  cctgccattcaacggttgaaaccagcctgctactg   >  1:971121‑M2/1‑1 (MQ=255)
                                  cctgccattcaacggttgaaacaagcctgctactg   >  1:5768226‑M2/1‑1 (MQ=255)
                                  cctgccacttcaccgtcggcgcgcatttcaatatc   >  1:4516450‑M2/1‑1 (MQ=255)
                                  cctgccaatgtcggatgcggtgcgagcgccttatc   >  1:14173342‑M2/1‑1 (MQ=255)
                                  cctgccaatgtcggatgcggtgcgagcgccttatc   >  1:9149969‑M2/1‑1 (MQ=255)
                                  ccTGCcattgaaacggatcccggtgcaagtgcctt   <  1:733857‑M1/35‑31 (MQ=255)
                                  ccTGCcattgaaacggatcccggtgcaagtgcctt   <  1:908297‑M1/35‑31 (MQ=255)
                                  ccTGCcattgaaacggatcccggtgcaagtgcctt   <  1:6349489‑M1/35‑31 (MQ=255)
                                  ccTGCcattgaaacggatcccggtgcaagtgcctt   <  1:10238596‑M1/35‑31 (MQ=255)
                                  ccTGCcattgaaacggatccaggtgcaagtgcctt   <  1:10419030‑M1/35‑31 (MQ=255)
                                  ccTCCAATCCCAGTCCGGCCATTCACCAATCCCCt  <  1:3731525/35‑1 (MQ=25)
                                  |                                   
GTGATGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCATTCACCAATCCCCT  >  REL606/3625422‑3625490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.