New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 246042115 (1.120)8 (0.080) 5/44 NT 10.0% coding (1833/2445 nt) fadE acyl‑CoA dehydrogenase
?REL606 503801 = 39 (0.410)coding (587/927 nt) ybbS DNA‑binding transcriptional activator of the allD operon

GGTTAAGGTGCGGGCGCTGTCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGG  >  REL606/503767‑503835
                                  |                                  
ggTTAAGGTGCGGGCGCTGTCTTCAATATTGAccg                                    <  1:18356297/35‑1 (MQ=255)
ggTTAAGGTGCGGGCGCTGTCTTCAATATTGAccg                                    <  1:17672885/35‑1 (MQ=255)
ggTTAAGGTGCGGGCGCTGTCTTCAATATTGAccg                                    <  1:4079372/35‑1 (MQ=255)
ggTTAAGGTGCGGGCGCTGTCTTCAATATTGAccg                                    <  1:14447272/35‑1 (MQ=255)
 gTTAAGGTGCGGGCGCTGTCTTCAATATTGCccgc                                   <  1:3482828/35‑1 (MQ=255)
 gTTAAGGTGCGGGCGCTGTCTTCAATATTGAccgc                                   >  1:5264368/1‑35 (MQ=255)
    aaGGTGCGGGCGCTGTCTTCAATATTGACCGCCgg                                >  1:4079911/1‑35 (MQ=255)
     aGGTGCGGGCGCTGTCTTCAATATTGAccgccgca                               >  1:18075106/1‑33 (MQ=255)
     aGGTGCGGGCGCTGTCTTCAATATTGACCGCCggg                               >  1:908890/1‑34 (MQ=255)
       gTGCGGGCGCTGTCTTCAATATTGACCGCCGGaaa                             >  1:18956764/1‑35 (MQ=255)
       gTGCGGGCGCTGTCTTCAATATTGACCGCCGGaaa                             >  1:10719070/1‑35 (MQ=255)
       gTGCGGGCGCTGTCTCCAATATTGACCGCCGGaaa                             >  1:3034888/1‑35 (MQ=255)
         gCGGGCGCTGTCTTCAATATTGACCGCCGGAAAgc                           >  1:3426940/1‑35 (MQ=255)
          cGGGCGCTGTCTTCAATATTGACCGCCGGAAAgcg                          >  1:18948003/1‑35 (MQ=255)
          cGGGCGCTGTCTTCAATATTGACCGCCGGAAAgcg                          >  1:9175316/1‑35 (MQ=255)
           gggCGCTGTCTTCAATATTGACCGCCGGAAAgcgc                         >  1:14461665/1‑35 (MQ=255)
           gggCGCTGTCTTCAATATTGACCGCCGGAAAgcgc                         >  1:11222731/1‑35 (MQ=255)
           gggCGCTGTCTTCAATATTGACCGCCGGAAAgcgc                         >  1:2491983/1‑35 (MQ=255)
           gggCGCTGTCTTCAATATTCCCCGCCGGAAAgcgc                         <  1:6034129/35‑1 (MQ=37)
            ggCGCTGTCTTCAATATTGACCGCCGGAAAGcgcc                        >  1:3900974/1‑35 (MQ=255)
            ggCGCTGTCTTCAATATTGACCGCCGGAAAGcgcc                        >  1:10586942/1‑35 (MQ=255)
            ggCGCTGTCTTCAATATTGACCGCAGGAAAGcgcc                        <  1:17177516/35‑1 (MQ=255)
              cgcTGTCTTCAATATTGACCGCCGGAAAGcgccgc                      >  1:1504823/1‑35 (MQ=255)
              cgcTGTCTTCAATATTGACCGCCGGAAAGcgccgc                      >  1:11035903/1‑35 (MQ=255)
              cgcTGTCTTCAATATTGACCGCCGGAAAGcgccgc                      >  1:10146601/1‑35 (MQ=255)
               gcTGTCTTCAATATTGACCGCCGGAAAGCGCCGCa                     >  1:3378503/1‑35 (MQ=255)
               gcTGTCTTCAATATTGACCGCCGGAAAGCGCCGCa                     >  1:18305621/1‑35 (MQ=255)
               gcTGTCTTCAATATTGACCGCCGGAAAGCGCCGCa                     >  1:10829187/1‑35 (MQ=255)
                 tGTCTTCAATATTGACCGCCGGAAATCTCCGCAAc                   >  1:10951669/1‑35 (MQ=37)
                 tGTCTTCAATATTGACCGCCGGAAATCGCCGCAAc                   >  1:16588545/1‑35 (MQ=255)
                 tGTCTTCAATATTGACCGCCGGAAAGCGCCGCAAc                   >  1:1233603/1‑35 (MQ=255)
                 tGTCTTCAATATTGACCGCCGGAAAGCGCCGCAAc                   >  1:6128032/1‑35 (MQ=255)
                  gTCTTCAATATTGACCGCCGGAAAGCGCCGCAACt                  >  1:18252051/1‑35 (MQ=255)
                  gTCTTCAATATTGACCGCCGGAAAGCGCCGCAACt                  >  1:16461301/1‑35 (MQ=255)
                    ttaaaatatcccccGCCGGAAAGCGCCGCAACTgc                <  1:4532657‑M2/21‑1 (MQ=255)
                    cTTCAATATTGACCGCCTGAAAGCGCCGCAACTgc                >  1:12398316/1‑35 (MQ=255)
                    cTTCAATATTGACCGCCGGAAAGCGCCGCAACTgc                >  1:14729879/1‑35 (MQ=255)
                     ttcaatatcccccGCCGGAAAGCGCCGCAACTgcg               <  1:18715818‑M2/22‑1 (MQ=255)
                     taaaatatcccccGCCGGAAAGCGCCGCAACTgcg               <  1:9825066‑M2/22‑1 (MQ=255)
                      tCAATATTGACCGCCGGAAAGCGCCGCAACTgcgc              >  1:3718415/1‑35 (MQ=255)
                      tCAATATTGACCGCCGGAAAGCGCCGCAACTgccc              >  1:8903367/1‑33 (MQ=255)
                      aaaatatcccccGCCGGAAAGCGCCGCAACTgcgc              <  1:18617922‑M2/23‑1 (MQ=255)
                       cAATATTGACCGCCGGAAAGCGCCGCAACTGCGCt             >  1:13015537/1‑35 (MQ=255)
                       cAATATTGACCGCCGGAAAGCGCCGCAACTGCGCt             >  1:2378487/1‑35 (MQ=255)
                       aaatattccccGCCGGAAAGCGCCGCAACTGCGCt             <  1:1320790‑M2/24‑1 (MQ=255)
                        aaTATTGACCGCCGGAAAGCGCCGCAACTGCGCtt            >  1:5331198/1‑35 (MQ=255)
                        aaTATTGACCGCCGGAAAGCGCCGCAACTGCGCtt            >  1:12903524/1‑35 (MQ=255)
                         atatTGACCGCCGGAAAGCGCCGCAACTGCTCTTc           >  1:5152392/1‑35 (MQ=255)
                         atatTGACCGCCGGAAAGCGCCGCAACTGCGCTTc           >  1:5411136/1‑35 (MQ=255)
                         atatTGACCGCCGGAAAGCGCCGCAACTGCGCTTc           >  1:16234265/1‑35 (MQ=255)
                         atatTGACCGCCGGAAAGCGCCGCAACTGCGCTTc           >  1:14102185/1‑35 (MQ=255)
                          tatgccccGCCGGAAAGCGCCGCAACTGCGCTTCt          <  1:10516017‑M2/27‑1 (MQ=255)
                          tatcccccGCCGGAAAGCGCCGCAACTGCGCTTCt          <  1:5570266‑M2/27‑1 (MQ=255)
                          tatcccccGCCGGAAAGCGCCGCAACTGCGCTTCt          <  1:20147804‑M2/27‑1 (MQ=255)
                          tatTGACCGCCGGAAAGCGCCGCAACTGCGCTTCt          >  1:17651163/1‑35 (MQ=255)
                          tatTGACCGCCGGAAAGCGCCGCAACTGCGATTCt          >  1:5116957/1‑35 (MQ=255)
                          attcccccGCCGGAAAGCGCCGCAACTGCGCTTCt          <  1:9077650‑M2/27‑1 (MQ=255)
                           tttccccGCCGGAAAGCGCCGCAACTGCGCTTCTg         <  1:17339291‑M2/28‑1 (MQ=255)
                           atcccccGCCGGAAAGCGCCGCAACTGCGCTTCTg         <  1:12868490‑M2/28‑1 (MQ=255)
                           atcccccGCCGGAAAGCGCCGCAACTGCGCTTCTg         <  1:9326961‑M2/28‑1 (MQ=255)
                           atTGACCGCCGGAAAGCGCCGCAACTGCGCttaga         >  1:2381505/1‑32 (MQ=255)
                           atTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTg         >  1:20545490/1‑35 (MQ=255)
                            ttGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGt        >  1:13157439/1‑35 (MQ=255)
                            tgacccGCCGGAAAGCGCCGCAACTGCGCTTCTGt        <  1:12622066‑M2/29‑1 (MQ=255)
                            tcccccGCCGGAAAGCGCCGCAACTGCGCTTCTGt        <  1:14956776‑M2/29‑1 (MQ=255)
                            tcccccGCCGGAAAGCGCCGCAACTGCGCTTCTGt        <  1:14981556‑M2/29‑1 (MQ=255)
                            tcccccGCCGGAAAGCGCCGCAACTGCGCTTCTGt        <  1:9559301‑M2/29‑1 (MQ=255)
                            tcccccGCCGGAAAGCGCAGCAACTGCGCTTCTGt        <  1:13819715‑M2/29‑1 (MQ=255)
                            gcccccGCCGGAAAGCGCCGCAACTGCGCTTCTGt        <  1:19944543‑M2/29‑1 (MQ=255)
                             tccccGCCGGAAAGCGCCGCAACTGCGCTTCTGtt       <  1:13312923‑M2/30‑1 (MQ=255)
                             tGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGtt       >  1:19973316/1‑35 (MQ=255)
                             cccccGCCGGAAAGCGCCGCAACTGCGCTTCTGtt       <  1:1106775‑M2/30‑1 (MQ=255)
                             cccccGCCGGAAAGCGCCGCAACTGCGCTTCTGtt       <  1:17891805‑M2/30‑1 (MQ=255)
                              gcccGCCGGAAAGCGCAGCAACTGCGCTTCTGTTa      <  1:14516009‑M2/31‑1 (MQ=255)
                              gACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTa      >  1:658251/1‑35 (MQ=255)
                              ccccGCCGGNAAGCGCCGCAACTGCGCTTCTGTTa      <  1:12319789‑M2/31‑1 (MQ=255)
                              ccccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTa      <  1:8623188‑M2/31‑1 (MQ=255)
                              ccccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTa      <  1:1609803‑M2/31‑1 (MQ=255)
                              ccccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTa      <  1:17622989‑M2/31‑1 (MQ=255)
                              ccccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTa      <  1:14662960‑M2/31‑1 (MQ=255)
                               cccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAg     <  1:19334845‑M2/32‑1 (MQ=255)
                                ccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGc    >  1:11645763‑M2/3‑35 (MQ=255)
                                ccGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGc    >  1:3547283‑M2/3‑35 (MQ=255)
                                 cGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCg   >  1:12546879‑M2/2‑35 (MQ=255)
                                 cGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCg   <  1:799961‑M2/34‑1 (MQ=255)
                                 cGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCg   <  1:12753859‑M2/34‑1 (MQ=255)
                                 cGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCg   <  1:16392887‑M2/34‑1 (MQ=255)
                                 cGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCg   <  1:20087466‑M2/34‑1 (MQ=255)
                                  gccgGAAAGCGCCGCAACTGCGCTTCTGTTAGCgg  >  1:9443735/1‑35 (MQ=255)
                                  gccgGAAAGCGCCGCAACTGCGCTTCTGTTAGCgg  >  1:14406285/1‑35 (MQ=255)
                                  gccgGAAAGCGCCGCAACTGCGATTCTGTTAGCgg  <  1:5205527/35‑1 (MQ=255)
                                  |                                  
GGTTAAGGTGCGGGCGCTGTCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGG  >  REL606/503767‑503835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.