New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 505984 =28 (0.270)12 (0.130) 6/42 NT 16.8% coding (808/816 nt) allR DNA‑binding transcriptional repressor
?REL606 2525727 = 94 (1.050)coding (4/1350 nt) hyfD hydrogenase 4 membrane subunit

CCGCGATATCAGCACGGCGTTGGGACTGAAAGCACATCCATAATGTCTGTCGCATCCCGCTCTGCGGAG  >  REL606/505950‑506018
                                  |                                  
tgcacagcgtggtcagtgcggcgaacaaaaccccc                                    >  1:16769951‑M1/35‑35 (MQ=255)
tgcacagcgtggtcagtgcggcgaacaaaaccccc                                    <  1:1420543‑M1/1‑1 (MQ=255)
tgcacagcatggtcagtgcggcgaacaaaaccccc                                    >  1:5956644‑M1/35‑35 (MQ=255)
ccgcGATATCAGCACGGCGTTGGGACTGAAAGcac                                    <  1:278040/35‑1 (MQ=255)
ccgcGATATCAGCACGGCGTTGGGACTGAAAGcac                                    <  1:3646695/35‑1 (MQ=255)
ccgcGATATCAGCACGGCGTTGGGACTGAAAGcac                                    >  1:15096324/1‑35 (MQ=255)
ccgcGATATCAGCACGGCGTTGGGACTGAAAGcac                                    <  1:19621870/35‑1 (MQ=255)
ccgcGATATCAGCACGGCGTTGGGACTGAAAGcac                                    >  1:18862965/1‑35 (MQ=255)
 gcacagcgtggtcagtgcggcgaacaaaaccccca                                   <  1:10297999‑M1/2‑1 (MQ=255)
 gcacagcgtggtcagtgcggcgaacaaaaccccca                                   <  1:15913968‑M1/2‑1 (MQ=255)
 gcacagcgtggtcagtgcggcgaacaaaaccccca                                   <  1:3352591‑M1/2‑1 (MQ=255)
 gcacagcgtggtcagtgaggcgaacaaaaccccca                                   >  1:14366095‑M1/34‑35 (MQ=255)
 cgcgATATCAGCACGGCGTTGGGACTGAAAGcaca                                   <  1:17585256/35‑1 (MQ=255)
 cgcgATATCAGCACGGCGTTGGGACTGAAAGcaca                                   <  1:18278628/35‑1 (MQ=255)
 cgcgATATCAGCACGGCGTTGGGACTGAAAGcaca                                   <  1:13592869/35‑1 (MQ=255)
 cgcgATATCAGCACGGCGTTGGGACTGAAAGcaca                                   >  1:6025868/1‑35 (MQ=255)
 cgcgATATCAGCACGGCGTTGGGACTGAAAGcaca                                   <  1:6191929/35‑1 (MQ=255)
 cgcgATATCAGCACGGCGTTGGGACTGAAAGcaca                                   >  1:2944353/1‑35 (MQ=255)
  gcgATATCAGCACGGCGTTGGGACTGAAAGCACAt                                  <  1:4544100/35‑1 (MQ=255)
  gcgATATCAGCACGGCGTTGGGACTGAAAGCACAt                                  <  1:16094506/35‑1 (MQ=255)
  gcgATATCAGCACGGCGTTGGGACTGAAAGCACAt                                  >  1:8842279/1‑35 (MQ=255)
  gcgATATCAGCACGGCGTTGGGACTGAAAGCACAt                                  <  1:8565247/35‑1 (MQ=255)
  gcgATATCAGCACGGCGTTGGGACTGAAAGCACAt                                  <  1:11991540/35‑1 (MQ=255)
  gcgATATCAGCACGGCGTTGGGACTGAAAGCACAt                                  <  1:12443888/35‑1 (MQ=255)
  cccagcgtggtcagtgcggcgaacaaaacccccat                                  >  1:154244‑M1/33‑35 (MQ=255)
  cacagcgtggtcagtgcggcgaacaaaacccccat                                  >  1:16979533‑M1/33‑35 (MQ=255)
  cacagcgtggtcagtgcggcgaacaaaacccccat                                  <  1:4121553‑M1/3‑1 (MQ=255)
  cacagcgtggtcagtgcggcgaacaaaacccccat                                  <  1:10447813‑M1/3‑1 (MQ=255)
  cacagcgtggtcagtgcggcgaacaaaacccccat                                  >  1:18201691‑M1/33‑35 (MQ=255)
  cacagcgtggtcagtgcggcgaacaaaacccccat                                  >  1:4809163‑M1/33‑35 (MQ=255)
  cacagcgtggtcagtgcggcgaacaaaacccccat                                  <  1:12560634‑M1/3‑1 (MQ=255)
  cacagcgtggtcagtgcggcgaacaaaacccccat                                  >  1:15838230‑M1/33‑35 (MQ=255)
   cgATATCAGCACGGCGTTGGGACTGAAAGCACATc                                 <  1:5319464/35‑1 (MQ=255)
   cgATATCAGCACGGCGTTGGGACTGAAAGCACATc                                 >  1:8742487/1‑35 (MQ=255)
    gATATCAGCACGGCGTTGGGACTGAAAGCACATcc                                >  1:2351052/1‑35 (MQ=255)
    gATATCAGCACGGCGTTGGGACTGAAAGCACATcc                                <  1:11224652/35‑1 (MQ=255)
    gATATCAGCACGGCGTTGGGACTGAAAGCACATcc                                >  1:7167559/1‑35 (MQ=255)
     atatCAGCACGGCGTTGTGACTGAAAGCACATCCa                               >  1:11760905/1‑35 (MQ=255)
     atatCAGCACGGCGTTGGGACTGAAAGCACATCCa                               <  1:4375738/35‑1 (MQ=255)
     atatCAGCACGGCGTTGGGACTGAAAGCACATCCa                               >  1:14039054/1‑35 (MQ=255)
      tatCAGCACGGCGTTGGGACTGAAAGCACATCCAt                              >  1:19747497/1‑35 (MQ=255)
      tatCAGCACGGCGTTGGGACTGAAAGCACATCCAt                              >  1:15050295/1‑35 (MQ=255)
      tatCAGCACGGCGTTGGGACTGAAAGCACATCCAt                              >  1:4996762/1‑35 (MQ=255)
       atCAGCACGGCGTTGGGACTGAAAGCACATCCATa                             >  1:19831719/1‑35 (MQ=255)
       atCAGCACGGCGTTGGGACTGAAAGCACATCCATa                             >  1:20372305/1‑35 (MQ=255)
        tCAGCACGGCGTTGGGACTGAAAGCACATCCATaa                            >  1:15431704/1‑35 (MQ=255)
        tCAGCACGGCGTTGGGACTGAAAGCACATCCATaa                            >  1:4932557/1‑35 (MQ=255)
           gCACGGCGTTGGGACTGAAAGCACATCCATAAtgt                         >  1:17400971/1‑35 (MQ=255)
            cACGGCGTTGGGACTGAAAGCACATCCATAAtgtc                        >  1:4616408/1‑35 (MQ=255)
            cACGGCGTTGGGACTGAAAGCACATCCATAAtgtc                        >  1:14316375/1‑35 (MQ=255)
            cACGGCGTTGGGACTGAAAGCACATCCATAAtgtc                        >  1:8389616/1‑35 (MQ=255)
            cACGGCGTGGGGACTGAAAGCACATACATAAtgtc                        <  1:237979/35‑1 (MQ=37)
             aCGGCGTTGGGACTGAAAGCACATCCATAAtgtct                       >  1:7990852/1‑35 (MQ=255)
             aCGGCGTTGGGACTGAAAGCACATCCATAAtgtct                       >  1:9367052/1‑35 (MQ=255)
              cGGCGTTGGGACTGAAAGCACATCCATAAtgtctg                      >  1:11559079/1‑35 (MQ=255)
               ggCGTTGGGACTGAAAGCACATCCATAAtgtctgg                     >  1:2957892/1‑34 (MQ=255)
               ggCGTTGGGACTGAAAGCACATCCATAAtgtctgg                     >  1:9892235/1‑34 (MQ=255)
               ggCGTTGGGACTGAAAGCACATCCATAAtgtctgg                     >  1:2872182/1‑34 (MQ=255)
               ggCGTTGGGACTGAAAGCACATCCATAAtgtctgg                     >  1:1659531/1‑34 (MQ=255)
                gCGTTGGGACTGAAAGCACATCCATAAtgtctggg                    >  1:11321930/1‑33 (MQ=255)
                 cGTTGGGACTGAAAGCACATCCATAAtgtctgggg                   >  1:8383390/1‑32 (MQ=255)
                  gtggggACGAAAACCCCATCCATAATGTCTGTCGc                  <  1:16170940/32‑1 (MQ=12)
                   tgggaacaaaaccccCATCCATAATGTCTGTCGCa                 >  1:5850326‑M1/16‑35 (MQ=255)
                    tGGGACTAAACCCCCATCCATAATGTCTGTCGCAt                <  1:11103429/35‑1 (MQ=19)
                     gggACAAAAACCCCATCCATAATGTCTGTCGCATc               <  1:12201444/35‑1 (MQ=19)
                      gaacaaaaccccCATCCATAATGTCTGTCGCATcc              >  1:4787997‑M1/13‑35 (MQ=255)
                        actaaaccccCATCCATAATGTCTGTCGCATCCCg            >  1:3594940‑M1/11‑35 (MQ=255)
                        acaaaaccccCATCCATAATGTCTGTCGCATCCCg            >  1:3006655‑M1/11‑35 (MQ=255)
                         caaaaccccCATCCATAATGTCTGTCGCATCCCGc           >  1:15032790‑M1/10‑35 (MQ=255)
                         cTGAAAGCACATCCATAATGTCTGGCGGATtcccc           >  1:1447666/1‑33 (MQ=21)
                          aaaaccccCATCCATAATGTCTGTCGCATCCCGct          >  1:12910844‑M1/9‑35 (MQ=255)
                          aaaaccccCATCCATAATGTCTGTCGCATCCCGct          >  1:11001147‑M1/9‑35 (MQ=255)
                          aaaaccccCATCCATAATGTCTGTCGCATCCCGct          >  1:10946807‑M1/9‑35 (MQ=255)
                           gaaccccCATCCATAATGTCTGTCGCATCCCGctc         >  1:5809194‑M1/8‑35 (MQ=255)
                           caaacccCATCCATAATGTCTGTCGCATCCCGctc         >  1:5085824‑M1/8‑35 (MQ=255)
                           aaaacccCATCCATAATGTCTGTCGCATCCCGctc         >  1:14446872‑M1/8‑35 (MQ=255)
                            aaccccCATCCATAATGTCTGTCGCATCCCGctct        >  1:12148317‑M1/7‑35 (MQ=255)
                             accccCATCCATAATGTCTGTCGCATCCCGCTCTg       >  1:17307965‑M1/6‑35 (MQ=255)
                             aacccCATCCATAATGTCTGTCGCATCCCGCTCTg       >  1:15337725‑M1/6‑35 (MQ=255)
                              gcccCATCCATAATGTCTGTCGCATCCCGCTCTGc      >  1:13251042‑M1/5‑35 (MQ=255)
                              ccccCATCCATAATGTCTGTCGCATCCCGCTCTGc      >  1:3523611‑M1/5‑35 (MQ=255)
                               gccCATCCATAATGTCTGTCGCATCCCGCTCTGCg     >  1:18957142‑M1/4‑35 (MQ=255)
                               cccCATCCATAATGTCTGTCGCATCCCGCTCTGCg     >  1:10273900‑M1/4‑35 (MQ=255)
                                ccCATCCATAATGTCTGTCGCATCCCGCTCTGCgg    >  1:17086068‑M1/3‑35 (MQ=255)
                                ccCATCCATAATGTCTGTCGCATCCCGCTCTGCgg    >  1:11743136‑M1/3‑35 (MQ=255)
                                 cCATCCATAATGTCTGTCGCATCCCGCTCTGCGGa   >  1:288511‑M1/2‑35 (MQ=255)
                                 cCATCCATAATGTCTGTCGCATCACGCTCTGCGGa   >  1:1696120‑M1/2‑35 (MQ=255)
                                  CATCCATAATGTCTGTCGCATCCCGCTCTGCGGAg  >  1:12038992‑M1/1‑35 (MQ=255)
                                  CATCCATAATGTCTGTCGCATCCCGCTCTGCGGAg  >  1:8224163‑M1/1‑35 (MQ=255)
                                  CATCCATAATGTCTGTCGCATCCCGCTCTGCGGAg  >  1:18536416‑M1/1‑35 (MQ=255)
                                  CATCCATAATGTCTGTCGCATCCCGCTCTGCGGAg  >  1:4115799‑M1/1‑35 (MQ=255)
                                  CATCCATAATGTCTGTCGCATCCAGCTCTGCGGAg  >  1:12254385‑M1/1‑35 (MQ=255)
                                  |                                  
CCGCGATATCAGCACGGCGTTGGGACTGAAAGCACATCCATAATGTCTGTCGCATCCCGCTCTGCGGAG  >  REL606/505950‑506018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.