New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 285065 = | 85 (0.830) | 8 (0.120) | 3/30 | NT | 14.3% | coding (529/4257 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
? | REL606 | = 3978905 | 43 (0.670) | coding (1426/2262 nt) | metE | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine methyltransferase |
Only 100 of 108 total aligned reads displayed.
ATAAATCATGATCGATAAAAGTATTCACCCCCGCCATCCAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/285107‑285065 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccagtcCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT < REL606/3978905‑3978872 ATAAATCATGATCGATAAAAGTATTCACCCCCGCC > 1:18269967/1‑35 ATAAATCATGATCGATAAAAGTATTCACCCCCGCC > 1:16715390/1‑35 ATAAATCATGATCGATAAAAGTATTCACCCCCGCC > 1:12078919/1‑35 AAATCATGATCGATAAAAGTATTCACCCCCGCCAT > 1:2584517/1‑35 AAATCATGATCGATAAAAGTATTCACCCCCGCCAT > 1:9731499/1‑35 AAATCATGATCGATAAAAGTATTCACCCCCGCCAT > 1:12048168/1‑35 AAATCATGATCGATAAAAGTATTCACCCCCGCCAT > 1:8585410/1‑35 AATCATGATCGATAAAAGTATTCACCCCCGCCATC > 1:67584/1‑35 AATCATGATCGATAAAAGTATTCACCCCAGCCATC < 1:10148111/35‑1 ATCATGATCGATAAAAGTATTCACCCCCGCCATCC > 1:11363663/1‑35 ATCATGATCGATAAAAGTATTCACCCCCGCCATCC > 1:12800121/1‑35 ATCATGATCGATAAAAGTATTCACCCCCGCCATCC > 1:3307112/1‑35 ATCATGATCGATAAAAGTATTCACCCCCGCCATCC > 1:15470009/1‑35 ATCATGATCGATAAAAGTATTCACCCCCGCCATCC > 1:401552/1‑35 TCATGATCGATAAAAGTATTCACCCCCGCCATCCA < 1:13062777/35‑1 TCATGATCGATAAAAGTATTCACCCCCGCCATCCA < 1:2054135/35‑1 TCATGATCGATAAAAGTATTCACCCCCGCCATCCA > 1:5273076/1‑35 CATGATCGATAAAAGTATTCACCCCCGCCATCCAG > 1:7788846/1‑35 CATGATCGATAAAAGTATTCACCCCCGCCATCCAG > 1:11516878/1‑35 ATGATCGATAAAAGTATTCACCCCCGCCATCCAGT > 1:5191006/1‑35 ATGATCGATAAAAGTATTCACCCCCGCCATCCAGT > 1:11516299/1‑35 ATGATCGATAAAAGTATTCACCCCCGCCATCCAGT > 1:10420737/1‑35 ATGATCGATAAAAGTATTCACCCCCGCCATCCAGT > 1:20416171/1‑35 TGATCGATAAAAGTATTCACCCCCGCCATCAAGTC > 1:18262666/1‑35 cCCCCCCCCATCCAGTCCCAAACGTTCCTGCTCAA < 1:6673432/34‑1 cCCCCCCCCATCCAGTCCCAAACGTTCCTGCTCAA < 1:12855924/34‑1 cCCCCCCCCATCCAGTCCCAAACGTTCCTGCTCAA < 1:19106853/34‑1 ACCCCCCCCATCCAGTCCCAAACGTTCCTGCTCAA < 1:2479648/35‑1 CCCCCCCCATCCAGTCCCAAACGTTCCTGCTCAAC < 1:12429249/35‑1 CCCCCCCCATCCAGTCCCAAACGTTCCTGCTCAAC < 1:9497143/35‑1 CCCCCCCATCCAGTCCCAAACGTTCCTGCTCAACA < 1:12385184/35‑1 CCCCCCATCCAGTCCCAAACGTTCCTGCTCAACAA < 1:11299364/35‑1 CCCCCCATCCAGTCCCAAACGTTCCTGCTCAACAA < 1:14337524/35‑1 cccCCATCCAGTCCCAAACGTTCCTGCTCAACAAT < 1:9254145/32‑1 cccCCATCCAGTCCCAAACGTTCCTGCTCAACAAT < 1:1906697/32‑1 cccCCATCCAGTCCCAAACGTTCCTGCTCAACAAT < 1:16410426/32‑1 cccCCATCCAGTCCCAAACGTTCCTGCTCAACAAT < 1:3725135/32‑1 accCCATCCAGTCCCAAACGTTCCTGCTCAACAAT < 1:14519705/32‑1 ccCCATCCAGTCCCAAACGTTCCTGCTCAACAATG < 1:2266948/33‑1 cCCATCCAGTCCCAAACGTTCCTGCTCAACAATGG < 1:5874702/34‑1 CCATCCAGTCCCAAACGTTCCTGCTCAACAATGGC < 1:15332343/35‑1 CATCCAGTCCCAAACGTTCCTGCTCAACAATTGCC > 1:10261748/1‑35 CATCCAGTCCCAAACGTTCCTGCTCAACAATGGgc < 1:2478982/35‑3 CATCCAGTCCCAAACGTTCCTGCTCAACAATGGCC < 1:661861/35‑1 CATCCAGTCCCAAACGTTCCTGCTCAACAATGGCC < 1:7588119/35‑1 CATCCAGTCCCAAACGTTCCTGCTCAACAATGGCC > 1:12123272/1‑35 CATCCAGTCCCAAACGTTCCTGCTCAACAATGGCC > 1:18298167/1‑35 CATCCAGTCCAAAACGTTCCTGCTCAACAATGGCC < 1:6152178/35‑1 ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT < 1:9890969/35‑1 ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT < 1:7256263/35‑1 ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT < 1:7233755/35‑1 ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT < 1:377875/35‑1 ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT < 1:16164590/35‑1 ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT > 1:13125035/1‑35 ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT < 1:16442134/35‑1 ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT > 1:11592245/1‑35 ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT > 1:19606032/1‑35 ctCAGTCCCAAACGTTCCTGCTCAACAATGGCCTG < 1:14735309/33‑1 TCCAGTCCCGAACGTTCCTGCTCAACAATGGCCTG < 1:3794147/35‑1 TCCAGTCCCAAACGTTCCTGCTCAACAATGGCCTG < 1:17683769/35‑1 TCCAGTCCCAAACGTTCCTGCTCAACAATGGCCTG < 1:3187638/35‑1 TCCAGTCCCAAACGTTCCTGCTCAACAATGGCCTG < 1:748071/35‑1 TCCAGTCCCAAACGTTCCTGCTCAACAATGGCCTG < 1:7616638/35‑1 TCCAGTCCCAAACGTTCCTGCTCAACAATGGCCTG < 1:12631448/35‑1 CCAGTCCCAAACGTTCCTGCTCAACAATGGCCTGC < 1:12352770/35‑1 CCAGTCCCAAACGTTCCTGCTCAACAATGGCCTGC > 1:17804736/1‑35 CCAGTCCCAAACGTTCCTGCTCAACAATGGCCTGC > 1:1982808/1‑35 CCAGTCCCAAACGTTCCTGCTCAACAATGGCCTGC < 1:14891923/35‑1 CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT < 1:13154652/35‑1 CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT > 1:6681755/1‑35 CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT < 1:13744813/35‑1 CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT < 1:15911780/35‑1 CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT > 1:12561451/1‑35 CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT > 1:163780/1‑35 CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT > 1:9113318/1‑35 aacCCCAAACGTTCCTGCTCAACAATGGCCTGCTT < 1:1284436/32‑1 AGTCCCAAACGTTCCTGCTCAACAATGGCCTGCTT > 1:8254607/1‑35 AGTCCCAAACGTTCCTGCTCAACAATGGCCTGCTT > 1:708563/1‑35 AGTCCCAAACGTTCCTGCTCAACAATGGCCTGCTT > 1:7039548/1‑35 AGTCCCAAACGTTCCTGCTCAACAATGGCCTGCTT > 1:12490915/1‑35 AGTCCCAAACGTTCCTGCTCAACAATGGCCTGCTT < 1:864084/35‑1 AGTCCCAAACGTTCCTGCTCAACAATGGCCTGCTT < 1:7006002/35‑1 GTCCCAAACGTTCCTGCTCAACAATGGCCTGCTTG > 1:1434493/1‑35 GTCCCAAACGTTCCTGCTCAACAATGGCCTGCTTG > 1:1456399/1‑35 GTCCCAAACGTTCCTGCTCAACAATGGCCTGCTTG > 1:15443666/1‑35 GTCCCAAACGTTCCTGCTCAACAATGGCCTGCTTG > 1:2146522/1‑35 GTCACAAACGTTCCTGCTCAACAATGGCCTGCTTG < 1:1823478/35‑1 GTCACAAACGTTCCTGCTCAACAATGGCCTGCTTG < 1:8953542/35‑1 TCCCAAACGTTCCTGCTCAACAATGGCCTGCTTGA < 1:664611/35‑1 TCCCAAACGTTCCTGCTCAACAATGGCCTGCTTGA < 1:11206123/35‑1 TCCCAAACGTTCCTGCTCAACAATGGCCTGCTTGA < 1:4477349/35‑1 TCCCAAACGTTCCTGCTCAACAATGGCCTGCTTGA < 1:169447/35‑1 TCCAAAACGTTCCTGCTCAACAATGGCCTGCTTGA < 1:4914183/35‑1 CCCAAACGTTCCTGCTCAACGATGGCCTGCTTGAT < 1:286832/35‑1 CCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT < 1:3368843/35‑1 CCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT > 1:15388579/1‑35 CCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT < 1:18584824/35‑1 CCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT > 1:1961860/1‑35 CCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT > 1:7067580/1‑35 CCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT < 1:10119985/35‑1 ATAAATCATGATCGATAAAAGTATTCACCCCCGCCATCCAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/285107‑285065 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccagtcCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT < REL606/3978905‑3978872 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |