New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 664688 = | NA (NA) | 108 (1.150) | 38/44 | NT | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
? | REL606 | 1270660 = | 0 (0.000) | intergenic (‑167/+238) | ldrC/chaA | toxic polypeptide, small/calcium/sodium:proton antiporter |
Only 100 of 171 total aligned reads displayed.
CCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGATAATTCCGGCTTGGTGTGGATACTACTTCT > REL606/1270627‑1270694 | catttcatcgtccaacaaaatgggtgcggtacact < 1:18282339‑M2/2‑2 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacacttt < 1:17537838‑M2/4‑4 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacacttt < 1:14629445‑M2/4‑4 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacacttt > 1:3269993‑M2/32‑32 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacacttt < 1:20417342‑M2/4‑4 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacactct < 1:16271888‑M2/4‑4 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacaCCgg < 1:8679949‑M2/4‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaGcggt > 1:1235745‑M2/31‑34 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaGcggg > 1:510941‑M2/31‑34 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaCCGGa < 1:4154275‑M2/5‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaCCGGa < 1:18551158‑M2/5‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaCCGGa < 1:2268160‑M2/5‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaCCGGa > 1:18781513‑M2/31‑35 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaCCGGAt > 1:1383778‑M2/30‑35 (MQ=255) catcgtccaacaaaatgggtgcagtacaCCGGATa < 1:15704988‑M2/7‑1 (MQ=255) catcgtccaacaaaatgggtgcagtacaCCGGATa < 1:20552583‑M2/7‑1 (MQ=255) catcgtccaacaaaatgggtgcagtacaCCGGATa > 1:2978503‑M2/29‑35 (MQ=255) catcgtccaacaaaatgggtgcagtacaCCGGATa < 1:3317655‑M2/7‑1 (MQ=255) catcgtccaacaaaatgggtgcagtacaCCGGATa > 1:678557‑M2/29‑35 (MQ=255) atcgtccaacaaaatgggtgcagtacaCCGGATaa < 1:368605‑M2/8‑1 (MQ=255) atcgtccaacaaaatgggtgcagtacaCCGGATaa > 1:18011711‑M2/28‑35 (MQ=255) atcgtccaacaaaatgggtgcagtacaCCGGATaa > 1:5553559‑M2/28‑35 (MQ=255) atcgtccaacaaaatgggtgcagtacaCCGGATaa > 1:975130‑M2/28‑35 (MQ=255) atcgtccaacaaaatgggtgcagtacaCCGGATaa < 1:15445427‑M2/8‑1 (MQ=255) tcgtccaacaaaatgggtgcagtacaCCGGATAAt < 1:10945686‑M2/9‑1 (MQ=255) tcgtccaacaaaatgggtgcagtacaCCGGATAAt > 1:2567517‑M2/27‑35 (MQ=255) cgtccaacaaaatgggtgcagtacaCCGGATAAtt > 1:17262838‑M2/26‑35 (MQ=255) cgtccaacaaaatgggtgcagtacaCCGGATAAtt < 1:1749754‑M2/10‑1 (MQ=255) cgtccaacaaaatgggtgcagtacaCCGGATAAtt > 1:18177070‑M2/26‑35 (MQ=255) cgtccaacaaaatgggtgcagtacaCCGGATAAtt > 1:11197589‑M2/26‑35 (MQ=255) tccaacaaaatgggtgcagtacaCCGGATAATTcc < 1:7208432‑M2/12‑1 (MQ=255) tccaacaaaatgggtgcagtacaCCGGATAATTcc > 1:7170847‑M2/24‑35 (MQ=255) tccaacaaaatgggtgcagtacaCCGGATAATTcc < 1:8349301‑M2/12‑1 (MQ=255) ccaacaaaatgggtgcagtacaCCGGATAATTCCg < 1:17062495‑M2/13‑1 (MQ=255) caacaaaatgggtgcagtacaCCGGATAATTCCgg < 1:20132584‑M2/14‑1 (MQ=255) caacaaaatgggtgcagtacaCCGGATAATTCCgg < 1:7659600‑M2/14‑1 (MQ=255) caacaaaatgggtgcagtacaCCGGATAATTCCgg < 1:7007245‑M2/14‑1 (MQ=255) aacaaaatgggtgcagtacaCCGGATAATTCCGGc < 1:6621624‑M2/15‑1 (MQ=255) aacaaaatgggtgcagtacaCCGGATAATTCCGGc < 1:17821221‑M2/15‑1 (MQ=255) aacaaaatgggtgcagtacaCCGGATAATTCCGGc < 1:6294223‑M2/15‑1 (MQ=255) aaaatgggtgcagtacaCCGGATAATTCCGGCTTg > 1:17109919‑M2/18‑35 (MQ=255) aaaatgggtgcagtacaCCGGATAATTCCGGCTTg > 1:6453919‑M2/18‑35 (MQ=255) aaaatgggtgcagtacaCCGGATAATTCCGGCTTg < 1:1983338‑M2/18‑1 (MQ=255) aaatgggtgcagtacaCCGGGTAATTCCGGCTTgg > 1:17549817‑M2/17‑35 (MQ=255) aaatgggtgcagtacaCCGGATAATTCCGGCTTgg < 1:6565498‑M2/19‑1 (MQ=255) aaatgggtgcagtacaCCGGATAATTCCGGCTTgg > 1:13185734‑M2/17‑35 (MQ=255) aaatgggtgcagtacaCCGGATAATTCCGGCTTgg > 1:9001359‑M2/17‑35 (MQ=255) aaatgggtgcagtacaCCGGATAATTCCGGCTTgg < 1:14548795‑M2/19‑1 (MQ=255) aatgggtgcagtacaCCGGATAATTCCGGCTtggg > 1:18751154‑M2/16‑34 (MQ=255) aatgggtgcagtacaCCGGATAATTCCGGCTTGgt > 1:8097429‑M2/16‑35 (MQ=255) aatgggtgcagtacaCCGGATAATTCCGGCTTGgt < 1:10205608‑M2/20‑1 (MQ=255) aatgggtgcagtacaCCGGATAATTCCGGCTTGgt > 1:15066881‑M2/16‑35 (MQ=255) aatgggtgcagtacaCCGGATAATTCCGGCTTGgt > 1:12179022‑M2/16‑35 (MQ=255) aatgcgtgcagtacaCCGGATAATTCCGGCTtggg > 1:802275‑M2/16‑34 (MQ=255) atgggtgcagtacaCCGGATAATTCCGGCTTGgtg > 1:6103302‑M2/15‑35 (MQ=255) atgggtgcagtacaCCGGATAATTCCGGCTTGgtg < 1:5783868‑M2/21‑1 (MQ=255) atgggtgcagtacaCCGGATAATTCCGGCTTGgtg < 1:4062927‑M2/21‑1 (MQ=255) atgggtgcagtacaCCGGATAATTCCGGCTTGgtg > 1:340341‑M2/15‑35 (MQ=255) atgggtgcagtacaCCGGATAATTCCGGCTTGgtg > 1:19541705‑M2/15‑35 (MQ=255) atgggtgcagtacaCCGGATAATTCCGGCTTGgtg < 1:20139482‑M2/21‑1 (MQ=255) atgggtgcagtacaCCGGATAATTCCGGCTTGgtg < 1:18315716‑M2/21‑1 (MQ=255) tgggtgcagtacaCCGGATAATTCCGGCTTGgtgt < 1:13438295‑M2/22‑1 (MQ=255) gggtgcagtacaCCGGATAATTCCGGCTTGGtgtg > 1:18170710‑M2/13‑35 (MQ=255) gggtgcagtacaCCGGATAATTCCGGCTTGGtgtg > 1:3856966‑M2/13‑35 (MQ=255) gggtgcagtacaCCGGATAATTCCGGCTTGGtgtg > 1:2391376‑M2/13‑35 (MQ=255) gggtgcagtacaCCGGATAATTCCGGCTTGGtgtg < 1:17827641‑M2/23‑1 (MQ=255) gggtgcagtacaCCGGATAATTCCGGCTTGGtgtg < 1:846321‑M2/23‑1 (MQ=255) ggtgcagtacaCCGGATAATTCCGGCTTGGTGTgg > 1:10605788‑M2/12‑35 (MQ=255) ggtgcagtacaCCGGATAATTCCGGCTTGGTGTgg > 1:4435274‑M2/12‑35 (MQ=255) ggtgcagtacaCCGGATAATTCCGGCTTGGTGTgg > 1:20482087‑M2/12‑35 (MQ=255) ggtgcagtacaCCGGATAATTCCGGCTTGGTGGgg > 1:4908476‑M2/12‑35 (MQ=255) gtgcagtacaCCGGATAATTCCGGCTTGGTGTGGa > 1:11913242‑M2/11‑35 (MQ=255) tgcagtacaCCGGATAATTCCGGCTTGGTGTGGAt < 1:862105‑M2/26‑1 (MQ=255) tgcagtacaCCGGATAATTCCGGCTTGGTGTGGAt < 1:3350485‑M2/26‑1 (MQ=255) gcagtacaCCGGATAATTCCGGCTTGGTGTGGAta > 1:4685905‑M2/9‑35 (MQ=255) gcagtacaCCGGATAATTCCGGCTTGGTGTGGAta > 1:14335424‑M2/9‑35 (MQ=255) cagtacaCCGGATAATTCCGGCTTGGTGTGGataa > 1:18501852‑M2/8‑34 (MQ=255) cagtacaCCGGATAATTCCGGCTTGGTGTGGAtac < 1:7292399‑M2/28‑1 (MQ=255) cagtacaCCGGATAATTCCGGCTTGGTGTGGAtac < 1:15734204‑M2/28‑1 (MQ=255) cagtacaCCGGATAATTCCGGCTTGGTGTGGAtac < 1:1887257‑M2/28‑1 (MQ=255) agtacaCCGGATAATTCCGGCTTGGTGTGgataat > 1:4622263‑M2/7‑33 (MQ=255) agtacaCCGGATAATTCCGGCTTGGTGTGGAtact < 1:5146998‑M2/29‑1 (MQ=255) agtacaCCGGATAATTCCGGCTTGGTGTGGAtact < 1:16830005‑M2/29‑1 (MQ=255) agtacaCCGGATAATTCCGGCTTGGTGTGGAtact < 1:7615753‑M2/29‑1 (MQ=255) gtacaCCGGATAATTCCGGCTTGGTGTggataaca > 1:7131516‑M2/6‑32 (MQ=255) gtacaCCGGATAATTCCGGCTTGGTGTggataaaa > 1:8704509‑M2/6‑32 (MQ=255) gtacaCCGGATAATTCCGGCTTGGTGTGGAtacta < 1:10103181‑M2/30‑1 (MQ=255) gtacaCCGGATAATTCCGGCTTGGTGTGGAtacta < 1:11886850‑M2/30‑1 (MQ=255) gtacaCCGGATAATTCCGGCTTGGTGTGGAtaata > 1:2819396‑M2/6‑35 (MQ=255) tacaCCGGATAATTCCGGCTTGGTGTGGataatag > 1:5519654‑M2/5‑34 (MQ=255) tacaCCGGATAATTCCGGCTTGGTGTGGAtactac > 1:16252567‑M2/5‑35 (MQ=255) acaCCGGATAATTCCGGCTTGGTGTGGATactact < 1:12997198‑M2/32‑1 (MQ=255) acaCCGGATAATTCCGGCTTGGTGTGGATaatact > 1:5210222‑M2/4‑35 (MQ=255) caCCGGATAATTCCGGCTTGGTGTGGATAATACtt > 1:6243702‑M2/3‑35 (MQ=255) aCCGGATAATTCCGGCTTGGTGTGGATACTACTTc > 1:346822‑M2/2‑35 (MQ=255) aCCGGATAATTCCGGCTTGGTGTGGATACTACTTc < 1:12815927‑M2/34‑1 (MQ=255) aCCGGATAATTCCGGCTTGGTGTGGATACTACTTc < 1:11300825‑M2/34‑1 (MQ=255) aCCGGATAATTCCGGCTTGGTGTGGATAATAAttt > 1:12653557/1‑34 (MQ=1) ccGGATAATTCCGGCTTGGTGTGGATACTACTtct < 1:17794243/35‑1 (MQ=38) ccGGATAATTCCGGCTTGGTGTGGATACTACTtct < 1:15308338/35‑1 (MQ=38) | CCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGATAATTCCGGCTTGGTGTGGATACTACTTCT > REL606/1270627‑1270694 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |