New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3630716 | NA (NA) | 79 (0.770) | 38/48 | NT | NA | intergenic (‑171/‑305) | ldrD/yhjV | toxic polypeptide, small/predicted transporter |
? | REL606 | = 3652533 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region |
CCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGC > REL606/3630713‑3630750 | ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt < 1:964939/35‑1 (MQ=32) ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt > 1:10131564/1‑35 (MQ=32) ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt < 1:1062599/35‑1 (MQ=32) ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt > 1:11035140/1‑35 (MQ=32) ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt > 1:12028647/1‑35 (MQ=32) ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt > 1:8503643/1‑35 (MQ=32) ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt > 1:16448195/1‑35 (MQ=32) ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt < 1:3455300/35‑1 (MQ=32) ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt < 1:19881381/35‑1 (MQ=32) cGGAACCTTTCCGGCTTGCCGCTGATTCTACGAtt > 1:10508159/1‑35 (MQ=35) cGGAACCTTTCCGGCTTGCCGCTGATTCTACGAtt < 1:14470079/35‑1 (MQ=35) ggAACCTTTCCGGCTTGCCGCTTATTCTACGATTg > 1:4566600/1‑35 (MQ=255) ggAACCTTTCCGGCTTGCCGCTGATTCTACGATTg < 1:8903253/35‑1 (MQ=38) ggAACCTTTCCGGCTTGCCGCTGATTCTACGATTg > 1:554537/1‑35 (MQ=38) ggAACCTTTCCGGCTTGCCGCTGATTCTACGATTg > 1:5263798/1‑35 (MQ=38) ggAACCTTTCCGGCTTGCCGCTGATTCTACGATTg > 1:16807467/1‑35 (MQ=38) ggAACCTTTCCGGCTTGCCGCTGATTCTACGATTg < 1:10073305/35‑1 (MQ=38) ggAACCTTTCCGGCTTGCCGCTGATTATACGATTg < 1:7915725/35‑1 (MQ=255) gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc > 1:18506456/1‑35 (MQ=40) gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc < 1:20231119/35‑1 (MQ=40) gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc < 1:3032928/35‑1 (MQ=40) gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc < 1:18074781/35‑1 (MQ=40) gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc < 1:3772692/35‑1 (MQ=40) gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc > 1:15567326/1‑35 (MQ=40) gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc > 1:12761350/1‑35 (MQ=40) gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc > 1:7168521/1‑35 (MQ=40) gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc > 1:8372498/1‑35 (MQ=40) gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc < 1:12555258/35‑1 (MQ=40) gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc > 1:11742752/1‑35 (MQ=40) | CCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGC > REL606/3630713‑3630750 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |