New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1076256103 (1.000)12 (0.160) 3/36 NT 15.1% coding (711/2547 nt) torA trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit
?REL606 3800450 = 58 (0.750)intergenic (+10/+31) ECB_03545/yicM hypothetical protein/predicted transporter

Only 100 of 238 total aligned reads displayed.

TGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAAGCGAACTGGTGGTGCCCGGATCACGATGTTTATG  >  REL606/1076222‑1076290
                                  |                                  
tgCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    >  1:5942342‑M1/1‑35 (MQ=255)
tgCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    >  1:16329841‑M1/1‑35 (MQ=255)
tgCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    >  1:9607246‑M1/1‑35 (MQ=255)
tgCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    >  1:2789748‑M1/1‑35 (MQ=255)
atctgTGGGGCTCCGATTTGCTGAAAAACCAGCAA                                    <  1:11246882‑M1/33‑1 (MQ=255)
 gCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAAg                                   >  1:12678568/1‑35 (MQ=255)
  cTGTGGGGCTCCGATTTGCTGAAAAACCAGCAAGc                                  <  1:3752508/35‑1 (MQ=255)
   tgtgGGGCTCCGATTTGCTGAAAAACCAGCAAGCg                                 >  1:9717155/1‑35 (MQ=255)
    gtgGGGCTCCGATTTGCTGAAAAACCAGCAAGCGa                                <  1:4095649/35‑1 (MQ=255)
    gtgGGGCTCCGATTTGCTGAAAAACCAGCAAGCGa                                <  1:7756575/35‑1 (MQ=255)
      ggggCTCCGATTTGCTGAAAAACCAGCAAGCGAAc                              >  1:15924319/1‑35 (MQ=255)
       gggCTCCGATTTGCTGAAAAACCAGCAAGCGAACt                             <  1:14341806/35‑1 (MQ=255)
       gggCTCCGATTTGCTGAAAAACCAGCAAGCGAACt                             >  1:13310389/1‑35 (MQ=255)
       gggCTCCGATTTGCTGAAAAACCAGCAAGCGAACt                             <  1:8608339/35‑1 (MQ=255)
        ggCTCCGATTTGCTGAAAAACCAGCAAGCGAACtg                            <  1:4734822/35‑1 (MQ=255)
        ggCTCCGATTTGCTGAAAAACCAGCAAGCGAACtg                            >  1:15622526/1‑35 (MQ=255)
         gCTCCGATTTGCTGAAAAACCAGCAAGCGAACtgg                           <  1:4242946/35‑1 (MQ=255)
         gCTCCGATTTGCTGAAAAACCAGCAAGCGAACtgg                           <  1:10538090/35‑1 (MQ=255)
          cTCCGATTTGCTGAAAAACCAGCAAGCGAACtggt                          >  1:3949624/1‑35 (MQ=255)
           tCCGATTTGCTGAAAAACCAGCAAGCGAACtggtg                         >  1:2955574/1‑35 (MQ=255)
           tCCGATTTGCTGAAAAACCAGCAAGCGAACtggtg                         >  1:7553539/1‑35 (MQ=255)
            ccGATTTGCTGAAAAACCAGCAAGCGAACtggtgg                        >  1:12584216/1‑35 (MQ=255)
            ccGATTTGCTGAAAAACCAGCAAGCGAACtggtgg                        <  1:11036282/35‑1 (MQ=255)
            ccGATTTGCTGAAAAACCAGCAAGCGAACtggtgg                        <  1:5019296/35‑1 (MQ=255)
            ccGATTTGCTGAAAAACCAGCAAGCGAACtggtgg                        >  1:17601832/1‑35 (MQ=255)
             cGATTTGCTGAAAAACCAGCAAGCGAACTggtggt                       <  1:9449341/35‑1 (MQ=255)
             cGATTTGCTGAAAAACCAGCAAGCGAACTggtggt                       <  1:10788886/35‑1 (MQ=255)
             cGATTTGCTGAAAAACCAGCAAGCGAACTggtggt                       >  1:17671562/1‑35 (MQ=255)
              gATTTGCTGAAAAACCAGCAAGCGAACTGgtggtg                      >  1:3220862/1‑35 (MQ=255)
              gATTTGCTGAAAAACCAGCAAGCGAACTGgtggtg                      <  1:12610928/35‑1 (MQ=255)
               aTTTGCTGAAAAACCAGCAAGCGAACTGGTGGGGc                     >  1:6627239/1‑35 (MQ=255)
                tttGCTGAAAAACCAGCAAGCGAACTGGTGGGGcc                    >  1:9006424/1‑35 (MQ=255)
                 ttGCTGAAAAACCAGCAAGCGAACTGGTGGTGccc                   <  1:2338979/35‑1 (MQ=255)
                  tGCTGAAAAACCAGCAAGCGAACTGGTGGTGCCCg                  >  1:18319025/1‑35 (MQ=255)
                  tGCTGAAAAACCAGCAAGCGAACTGGTGGTGCCCg                  >  1:14893030/1‑35 (MQ=255)
                  tGCTGAAAAACCAGCAAGCGAACTGGTGGTGCCCg                  <  1:10842545/35‑1 (MQ=255)
                  tGCTGAAAAACCAGCAAGCGAACTGGTGGTGCCCg                  <  1:10045209/35‑1 (MQ=255)
                  atatgaaAAACCAGCAAcaactactgaccaacgct                  <  1:8033077‑M1/32‑19 (MQ=255)
                   gCTGAAAAACCAGCAAGCGAACTGTTGGTGCCCgg                 >  1:1030422/1‑35 (MQ=255)
                   gCTGAAAAACCAGCAAGCGAACTGGTGGTGCCCgg                 <  1:8356334/35‑1 (MQ=255)
                   gCTGAAAAACCAGCAAGCGAACTGGGGGTGCCCgg                 <  1:19689441/35‑1 (MQ=255)
                    cTGAAAAACCAGCAAGCGAACTGGTGGTGCCCGGa                <  1:7447074/35‑1 (MQ=255)
                    cTGAAAAACCAGCAAGCGAACTGGTGGTGCCCGGa                <  1:20506405/35‑1 (MQ=255)
                     tggaaaaccaGCAAcaactactgaccaacgcttct               <  1:16499135‑M1/32‑22 (MQ=255)
                     tGAAAAACCAGCAAGCGAACTGGTGGTGCCCGGAt               <  1:14433949/35‑1 (MQ=255)
                     tGAAAAACCAGCAAGCGAACTGGTGGTGCCCGGAt               <  1:12362175/35‑1 (MQ=255)
                      gAAAAACCAGCAAGCGAACTGGTGGTGCCCGGATc              >  1:10129053/1‑35 (MQ=255)
                      aaaaaacCAGCAAcaactactgaccaacgcttctt              <  1:15199926‑M1/34‑23 (MQ=255)
                      aaaaaacCAGCAAcaactactgaccaacgcttatt              <  1:18239126‑M1/34‑23 (MQ=255)
                       aaagaCCAGCAAcaactactgaccaacgcttcttt             <  1:190103‑M1/35‑24 (MQ=255)
                       aaaaaCCAGCAAGCGAACTGGTGGTGCCCGGATCa             <  1:1239506/35‑1 (MQ=255)
                       aaaaaCCAGCAAGCGAACTGGTGGTGCCCGGATCa             >  1:19441897/1‑35 (MQ=255)
                         aaaCCAGCAAGCGAACTGGTGGTGCCCGGATCACg           <  1:14916090/35‑1 (MQ=255)
                          aaCCAGCAAcaactactgaccaacgcttctttacc          <  1:714720‑M1/35‑27 (MQ=255)
                          aaCCAGCAAGCGAACTGGTGGTGCCCGGATCACGa          >  1:15372341/1‑35 (MQ=255)
                          aaCCAGCAAGCGAACTGGTGGGGGCCGGGTCACgg          >  1:18450155/1‑34 (MQ=21)
                          aaCCAGCAAGCGAACTGGTGGGGCCCGGATCACGa          >  1:18167883/1‑35 (MQ=255)
                           aCCAGCAAcaactactgaccaaggcttctttacct         <  1:1716449‑M1/35‑28 (MQ=255)
                           aCCAGCAAcaactactgaccaacgcttctttacct         <  1:13382962‑M1/35‑28 (MQ=255)
                           aCCAGCAAcaactactgaccaacgcttctttacct         <  1:16958685‑M1/35‑28 (MQ=255)
                           aCCAGCAAGCGAACTGGTGGTGCCCGGATCACGAt         <  1:15746777/35‑1 (MQ=255)
                           aCCAGCAAGCGAACTGGTGGTGCCCGGATCACGAt         <  1:14663691/35‑1 (MQ=255)
                           aCCAGCAAGCGAACTGGTGGTGCCCGGATCACGAt         <  1:20147626/35‑1 (MQ=255)
                           aCCAGCAAGCGAACTGGTGGGGCCCGGATCACGAt         >  1:2166766/1‑35 (MQ=255)
                            ccAGCAAGCGAACTGGTGGTGCCCGGATCACGATg        >  1:7884357/1‑35 (MQ=255)
                             cAGCAAcaactactgaccaacgcttctttacctga       <  1:17499727‑M1/35‑30 (MQ=255)
                              aGCAAGCGAACTGGTGGTGCCCGGATCACGATGtt      <  1:2206967/35‑1 (MQ=255)
                              aGCAAGCGAACTGGTGGTGCCCGGATCACGATGtt      <  1:5472540/35‑1 (MQ=255)
                              aGCAAGCGAACTGGTGGTGCCCGGATCACGATGtt      <  1:15502580/35‑1 (MQ=255)
                              aGCAAGCGAACTGGTGGTGCCCGGATCACGATGtt      <  1:1181619/35‑1 (MQ=255)
                               gCAAcaactactgaccaacgcttctttacctgata     <  1:16195610‑M1/35‑32 (MQ=255)
                               gCAAGCGAACTGGTGGTGCCCGGATCACGATGttt     <  1:4944040/35‑1 (MQ=255)
                               gCAAGCGAACTGGTGGTGCCCGGATCACGATGttt     <  1:18732932/35‑1 (MQ=255)
                               gCAAGCGAACTGGTGGTGCCCGGATCACGATGttt     <  1:2395017/35‑1 (MQ=255)
                               gCAAGCGAACTGGTGGTGCCCGGATCACGATGttt     <  1:19262641/35‑1 (MQ=255)
                               gCAAGCGAACTGGTGGGGCCCGGATCACGATGgtt     >  1:1395806/1‑35 (MQ=37)
                                caacaactactgaccaacgcttctttacctgatat    <  1:16461437‑M1/35‑33 (MQ=255)
                                caacaactactgaccaacgcttctttacctgatat    >  1:16736750‑M1/1‑3 (MQ=255)
                                cAAGCGAACTGGTGGTGCCCGGATCACGATGTTTa    <  1:15828696/35‑1 (MQ=255)
                                cAAGCGAACTGGTGGTGCCCGGATCACGATGTTTa    <  1:4338748/35‑1 (MQ=255)
                                cAAGCGAACTGGTGGTGCCCGGATCACGATGTTTa    <  1:4148813/35‑1 (MQ=255)
                                cAAGCGAACTGGTGGTGCCCGGATCACGATGTTTa    <  1:8543655/35‑1 (MQ=255)
                                 aacaactactgaccaacgcttctttacctgatatc   <  1:9827592‑M1/35‑34 (MQ=255)
                                 aacaactactgaccaacgcttctttacctgatatc   >  1:11900624‑M1/1‑2 (MQ=255)
                                 aacaactactgaccaacgcttctttacctgatatc   <  1:12232466‑M1/35‑34 (MQ=255)
                                 aacaactactgaccaacgcttctttacctgatatc   <  1:19166230‑M1/35‑34 (MQ=255)
                                 aacaactactgaccaacgcttctttacctgatatc   <  1:8964677‑M1/35‑34 (MQ=255)
                                 aacaactactgaccaacgcttctttacctgatatc   <  1:1399582‑M1/35‑34 (MQ=255)
                                 aacaactactgaccaacgcttctttacctgatatc   <  1:20058486‑M1/35‑34 (MQ=255)
                                 aacaactactgaccaacgcttctttacctgatatc   >  1:3701924‑M1/1‑2 (MQ=255)
                                 aacaactactgaccaacgcttctttacctgatatc   >  1:5314974‑M1/1‑2 (MQ=255)
                                 aaGCGAACTGGTGGTGCCCGGATCACGATGttttt   >  1:17263967/1‑33 (MQ=255)
                                 aaGCGAACTGGTGGTGCCCGGATCACGATGTTTAt   >  1:19884725/1‑35 (MQ=255)
                                 aaGCGAACTGGTGGTGCCCGGATCACGATGTTTAt   >  1:7227400/1‑35 (MQ=255)
                                 aaGCGAACTGGTGGTGCCCGGATCACGATGTTTAt   >  1:6853156/1‑35 (MQ=255)
                                  acaactactgaccaacgcttctttacctgatatca  <  1:12954804‑M1/35‑35 (MQ=255)
                                  acaactactgaccaacgcttctttacctgatatca  <  1:9743474‑M1/35‑35 (MQ=255)
                                  aGCGAACTGGTGGTGCCCGGATCACGATGTTTATg  <  1:13665906/35‑1 (MQ=255)
                                  aGCGAACTGGTGGTGCCCGGATCACGATGTTTATg  <  1:7260456/35‑1 (MQ=255)
                                  aGCGAACTGGTGGTGCCCGGATCACGATGTTTATg  <  1:382381/35‑1 (MQ=255)
                                  |                                  
TGCTGTGGGGCTCCGATTTGCTGAAAAACCAGCAAGCGAACTGGTGGTGCCCGGATCACGATGTTTATG  >  REL606/1076222‑1076290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.