New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1947885 = | 81 (0.790) | 20 (0.200) | 9/46 | NT | 16.6% | coding (250/861 nt) | cheR | chemotaxis regulator, protein‑glutamate methyltransferase |
? | REL606 | = 3428485 | 123 (1.250) | coding (671/1338 nt) | yhfM | predicted fructoselysine transporter |
Only 100 of 209 total aligned reads displayed.
TCTATCTGTTATATGACCGGCGAAATTAAAAACCCCGGAAAAACCATGCCACGAGCGCTGATTGGTTCC > REL606/3428451‑3428519 | tctATCTGTTATATGACCGGCGAAATTAAAAAccc < 1:3544685/35‑1 (MQ=255) cTATCTGTTATATGACCGGCGAAATTAAAAACCCc > 1:14709684‑M2/1‑34 (MQ=255) cTATCTGTTATATGACCGGCGAAATTAAAAACCCc > 1:16928432‑M2/1‑34 (MQ=255) cTATCTGTTATATGACCGGCGAAATTAAAAACCCc > 1:8780262‑M2/1‑34 (MQ=255) tATCTGTTATATGACCGGCGAAATTAAAAACCCCg > 1:5288128/1‑35 (MQ=255) tATCTGTTATATGACCGGCGAAATTAAAAACCCCg > 1:9384149/1‑35 (MQ=255) tATCTGTTATATGACCGGCGAAATTAAAAACCCCg < 1:10601597/35‑1 (MQ=255) tCTGTTATATGACCGGCGAAATTAAAAACCCCGGa > 1:20149561/1‑35 (MQ=255) tCTGTTATATGACCGGCGAAATTAAAAACCCCGGa > 1:13272164/1‑35 (MQ=255) tCTGTTATATGACCGGCGAAATTAAAAACCCCGGa < 1:4893278/35‑1 (MQ=255) cTGTTATATGACCGGCGAAATTAAAAACCCCGGaa > 1:11671835/1‑35 (MQ=255) cTGTTATATGACCGGCGAAATTAAAAACCCCGGaa < 1:12106108/35‑1 (MQ=255) tGTTATATGACCGGCGAAATTAAAAACCCCGGaaa > 1:16663424/1‑35 (MQ=255) tGTTATATGACCGGCGAAATTAAAAACCCCGGaaa > 1:3004823/1‑35 (MQ=255) tGTTATATGACCGGCGAAATTAAAAACCCCGGaaa > 1:514605/1‑35 (MQ=255) gTTATATGACCGGCGAAATTAAAAACCCCGGaaaa < 1:2021408/35‑1 (MQ=255) gTTATATGACCGGCGAAATTAAAAACCCCGGaaaa > 1:14367354/1‑35 (MQ=255) gTTATATGACCGGCGAAATTAAAAACCCCGGaaaa > 1:6348867/1‑35 (MQ=255) tataTGACCGGCGAAATTAAAAACCCCGGAAAAAc > 1:1725825/1‑35 (MQ=255) atatGACCGGCGAAATTAAAAACCCCGGAAAAAcc < 1:8234864/35‑1 (MQ=255) atatGACCGGCGAAATTAAAAACCCCGGAAAAAcc > 1:8815582/1‑35 (MQ=255) atatGACCGGCGAAATTAAAAACCCCGGAAAAAcc < 1:5988754/35‑1 (MQ=255) atatGACCGGCGAAATTAAAAACCCCGGAAAAAcc < 1:10029579/35‑1 (MQ=255) atatGACCGGCGAAATTAAAAACCCCGGAAAAAcc > 1:14041217/1‑35 (MQ=255) tatGACCGGCGAAATTAAAAACCCCGGAAAAACCa < 1:20597839/35‑1 (MQ=255) tatGACCGGCGAAATTAAAAACCCCGGAAAAACCa > 1:4653578/1‑35 (MQ=255) tatGACCGGCGAAATTAAAAACCCCGGAAAAACCa > 1:20460006/1‑35 (MQ=255) atGACCGGCGAAATTAAAAACCCCGTAAAAACCAt > 1:16380167/1‑35 (MQ=255) atGACCGGCGAAATTAAAAACCCCGGAAAAACCAt > 1:13628142/1‑35 (MQ=255) atGACCGGCGAAATTAAAAACCCCGGAAAAACCAt < 1:18466910/35‑1 (MQ=255) tGACCGGCGAAATTAAAAACCCCGGAAAAACCATg < 1:5376386/35‑1 (MQ=255) tGACCGGCGAAATTAAAAACCCCGGAAAAACCATg > 1:18054606/1‑35 (MQ=255) tGACCGGCGAAATTAAAAACCCCGGAAAAACCATg > 1:6387857/1‑35 (MQ=255) tGACCGGCGAAATTAAAAACCCCGGAAAAACCATg > 1:9472900/1‑35 (MQ=255) tGACAGGCGAAATTAAAAACCCCGGAAAAACCATg < 1:14378145/35‑1 (MQ=255) aCCGGCGAAATTAAAAACCCCGGAAAAACCATGcc > 1:2185425/1‑35 (MQ=255) ccGGCGAAATTAAAAACCCCGGAAAAACCATGCCa < 1:4320105/35‑1 (MQ=255) ccGGCGAAATTAAAAACCCCGGAAAAACCATGCCa < 1:17206268/35‑1 (MQ=255) cGGCGAAATTAAAAACCCCGGAAAAACCATGCCAc < 1:4740737/35‑1 (MQ=255) cGGCGAAATTAAAAACCCCGGAAAAACCATGCCAc < 1:17609869/35‑1 (MQ=255) cGGCGAAATTAAAAACCCCGGAAAAACCATGCCAc > 1:5036416/1‑35 (MQ=255) cGGCGAAATTAAAAACCCCGGAAAAACCATGCCAc > 1:5890003/1‑35 (MQ=255) cGGCGAAATTAAAAACCCCGGAAAAACCATGCCAc > 1:8328816/1‑35 (MQ=255) ggCGAAATTAAAAACCCCGGAAAAACCATGCCACg > 1:16827012/1‑35 (MQ=255) ggCGAAATTAAAAACCCCGGAAAAACCATGCCACg < 1:10981213/35‑1 (MQ=255) gCGAAATTAAAAACCCCGGAAAAACCATGCCACGa < 1:19963994/35‑1 (MQ=255) gCGAAATTAAAAACCCCGGAAAAACCATGCCACGa > 1:13602043/1‑35 (MQ=255) gCGAAATTAAAAACCCCGGAAAAACCATGCCACGa < 1:10686758/35‑1 (MQ=255) cGAAATTAAAAACCCCGGAAAAACCATTCCACGAg > 1:1151003/1‑35 (MQ=255) cGAAATTAAAAACCCCGGAAAAACCATTCCACGAg > 1:1667408/1‑35 (MQ=255) cGAAATTAAAAACCCCGGAAAAACCATGCCACGAg < 1:3736669/35‑1 (MQ=255) cGAAATTAAAAACCCCGGAAAAACCATGCCACGAg > 1:2226662/1‑35 (MQ=255) gAAATTAAAAACCCcctgccactcaccgatgtgct > 1:5549378‑M2/1‑14 (MQ=255) gAAATTAAAAACCCCGGAAAAACCATGCCACGAgc > 1:9680220/1‑35 (MQ=255) gAAATTAAAAACCCCGGAAAAACCATGCCACGAgc < 1:14487574/35‑1 (MQ=255) gAAATTAAAAACCCCGGAAAAACCATGCCACGAgc > 1:15146611/1‑35 (MQ=255) gAAATTAAAAACCCCGGAAAAACCATGCCACGAgc > 1:19070215/1‑35 (MQ=255) gAAATTAAAAACCCCGGAAAAACCATGCAACGAgc < 1:16177861/35‑1 (MQ=255) aatTTAAAAACCCcctgccactcaccgctgtgctg > 1:11440828‑M2/1‑13 (MQ=255) aaaTTAAAAACCCCGGAAAAACCATTCCACGAgcg > 1:13768764/1‑35 (MQ=255) aaaTTAAAAACCCCGGAAAAACCATGCCACGAgcg < 1:15780399/35‑1 (MQ=255) aaTTAAAAACCCcctgccactcaccgctgtgctga > 1:519394‑M2/1‑12 (MQ=255) aaTTAAAAACCCCGGAAAAACCATGCCACGAgcgc > 1:6931628/1‑35 (MQ=255) aaTTAAAAACCCCGGAAAAACCATGCCACGAgcgc > 1:2654348/1‑35 (MQ=255) aaTTAAAAACCCCGGAAAAACCATGCCACGAgcgc > 1:1829926/1‑35 (MQ=255) aTTAAAAACCCcctgccactcaccgctgtgctgat > 1:8924742‑M2/1‑11 (MQ=255) ttAAAAACCCcctgccactcaccgctgtgctgatt > 1:11470814‑M2/1‑10 (MQ=255) ttAAAAACCCCGGAAAAACCATGCCACGAGCGCTg < 1:61699/35‑1 (MQ=255) tAAAAACCCcctgccactcaccgctgtgctgatta > 1:1249118‑M2/1‑9 (MQ=255) tAAAAACCCCGGAAAAACCATGCCACGAGCGCTGa > 1:6267438/1‑35 (MQ=255) tAAAAACCCCGGAAAAACCATGCCACGAGCGCTGa > 1:1259607/1‑35 (MQ=255) gaaaccCCcctgccactcaccgctgtgctgattag > 1:16778402‑M2/2‑8 (MQ=255) aaaaaCCCcctgccactcaccgctgtgctgattag > 1:4073277‑M2/1‑8 (MQ=255) aaaaaCCCcctgccactcaccgctgtgctgattag > 1:15671262‑M2/1‑8 (MQ=255) aaaaaCCCCGGAAAAACCATGCCACGAGCGCTGAt > 1:16113683/1‑35 (MQ=255) aaacCCCcctgccactcaccgctgtgctgattaga > 1:10404092‑M2/1‑7 (MQ=255) aaaaCCCcctgccactcaccgctgtgctgattaga > 1:17712842‑M2/1‑7 (MQ=255) aaaaCCCCGGAAAAACCATGCCACGATCGCTGAtt > 1:4536224/1‑35 (MQ=255) aaaaCCCCGGAAAAACCATGCCACGAGCGCTGAtt > 1:19412935/1‑35 (MQ=255) aaaaCCCCGGAAAAACCATGCCACGAGCGCTGAtt > 1:3391825/1‑35 (MQ=255) aaaCCCcctgccactcaccgctgtgctgattagat > 1:6734410‑M2/1‑6 (MQ=255) aaCCCCGGAAAAACCATGCCACGAGCGCTGATTgg > 1:3234925/1‑35 (MQ=255) aaCCCCGGAAAAACCATGCCACGAGCGCTGATTgg > 1:11235181/1‑35 (MQ=255) cccccctgccactcaccgctgtgctgattagattc > 1:7248720‑M2/2‑4 (MQ=255) cccccctgccactcaccgctgtgctgattagattc > 1:1560105‑M2/2‑4 (MQ=255) aCCCCGGAAAAACCATGCCACGAGCGCTGATTGGt > 1:14898064/1‑35 (MQ=255) aCCCCGGAAAAACCATGCCACGAGCGCTGATTGGt > 1:3146605/1‑35 (MQ=255) ccccctgccactcaccgctgtgctgattagattcc > 1:12033896‑M2/1‑3 (MQ=255) ccccGGAAAAACCATGCCACGAGCGCTGATTGGtt < 1:12801030/35‑1 (MQ=255) cccctgccactcaccgctgtgctgattagattcca > 1:7315372‑M2/1‑2 (MQ=255) cccctgccactcaccgctgtgctgattagattcca > 1:6788362‑M2/1‑2 (MQ=255) cccctgccactcaccgctgtgctgattagattcca > 1:2870560‑M2/1‑2 (MQ=255) cccctgccactcaccgctgtgctgattagattcca > 1:8954067‑M2/1‑2 (MQ=255) cccctgccactcaccgatgtgctgattagattcca > 1:767713‑M2/1‑2 (MQ=255) cccGGAAAAACCATGCCACGAGCGCTGATTGGTTc > 1:17688672/1‑35 (MQ=255) cccGGAAAAACCATGCCACGAGCGCTGATTGGTTc < 1:9219982/35‑1 (MQ=255) ccctgccactcaccgctgtgctgattagattccag > 1:7575757‑M2/1‑1 (MQ=255) ccctgccactcaccgctgtgctgattagattccag > 1:7904315‑M2/1‑1 (MQ=255) ccGGAAAAACCATGCCACGAGCGCTGATTGGTTcc > 1:15511384/1‑35 (MQ=255) ccGGAAAAACCATGCCACGAGCGCTGATTGGTTcc < 1:14668355/35‑1 (MQ=255) | TCTATCTGTTATATGACCGGCGAAATTAAAAACCCCGGAAAAACCATGCCACGAGCGCTGATTGGTTCC > REL606/3428451‑3428519 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |