New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 866988 =115 (1.120)7 (0.090) 4/38 NT 9.9% coding (1206/2097 nt) yliE conserved inner membrane protein
?REL606 = 4527146 37 (0.450)coding (1137/2637 nt) fimD outer membrane usher protein, type 1 fimbrial synthesis

Only 100 of 201 total aligned reads displayed.

TGCGCATCCATAAGTCTGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGAGTTACGCAGAAAAAC  >  REL606/866954‑867022
                                  |                                  
tGCGCATCCATAAGTCTGCCATTTGTGAACCTTTg                                    <  1:10557530/35‑1 (MQ=255)
tGCGCATCCATAAGTCTGCCATTTGTGAACCTTTg                                    <  1:15342531/35‑1 (MQ=255)
tGCGCATCCATAAGTCTGCCATTTGTGAACCTTTg                                    >  1:12689398/1‑35 (MQ=255)
tGCCCATCCATAAGTCTGCCATTTGTGAACCTTTg                                    <  1:1812302/35‑1 (MQ=255)
gcaacgtgaagggcatactcgttattccattacgg                                    >  1:4685235‑M1/35‑35 (MQ=255)
gcaacgtgaagggcatactcgttattccattacgg                                    >  1:8252483‑M1/35‑35 (MQ=255)
 gcgcATCCATAAGTCTGCCATTTGTGAACCTTTGc                                   >  1:19310797/1‑35 (MQ=255)
 gcccATCCATAAGTCTGCCATTTGTGAACCTTTGc                                   <  1:4512063/32‑1 (MQ=255)
 gcccATCCATAAGTCTGCCATTTGTGAACCTTTGc                                   <  1:1328128/32‑1 (MQ=255)
 caacgtgaagggcatactcgttattccattacgGc                                   >  1:15411847‑M1/34‑35 (MQ=255)
 caacgtgaagggcatactcgttattccattacgGc                                   >  1:7207761‑M1/34‑35 (MQ=255)
 caacgtgaagggcatactcgttattccattacgGc                                   <  1:8392629‑M1/2‑1 (MQ=255)
  aacgtgaagggcatactcgttattccattacgGCa                                  >  1:8009087‑M1/33‑35 (MQ=255)
  aacgtgaagggcatactcgttattccattacgGCa                                  <  1:2517770‑M1/3‑1 (MQ=255)
   gcATCCATAAGTCTGCCATTTGTGAACCTTTGCAg                                 >  1:16592119/1‑35 (MQ=255)
   gcATCCATAAGTCTGCCATTTGTGAACCTTTGCAg                                 >  1:14162254/1‑35 (MQ=255)
   acgtgaatggcatactcgttattccattacgGCAg                                 <  1:14427023‑M1/4‑1 (MQ=255)
   acgtgaagggcatactcgttattccattacgGCAg                                 <  1:16446058‑M1/4‑1 (MQ=255)
   acgtgaagggcatactcgttattccattacgGCAg                                 >  1:1448704‑M1/32‑35 (MQ=255)
   acgtgaagggcatactcgttattccattacgGCAg                                 >  1:5149747‑M1/32‑35 (MQ=255)
    cgtgaagggcatactcgttattccattacgGCAgg                                <  1:10344590‑M1/5‑1 (MQ=255)
    cgtgaagggcatactcgttattccattacgGCAgg                                >  1:15976117‑M1/31‑35 (MQ=255)
    cATCCATAAGTCTGCCATTTGTGAACCTTTGCAgg                                >  1:12563551/1‑35 (MQ=255)
    cATCCATAAGTCTGCCATTTGTGAACCTTTGCAgg                                <  1:2828978/35‑1 (MQ=255)
     gtgaagggcatactcgttattccattacgGCAggg                               <  1:20223483‑M1/6‑1 (MQ=255)
     aTCCATAAGTCTGCCATTTGTGAACCTTTGCAggg                               >  1:3792588/1‑35 (MQ=255)
     aTCCATAAGTCTGCCATTTGTGAACCTTTGCAggg                               <  1:15143627/35‑1 (MQ=255)
      tgaagggcatactcgttattccattacgGCAgggg                              <  1:9465678‑M1/7‑1 (MQ=255)
       gaagggcatactcgttattccattacgGCAggggg                             <  1:245634‑M1/8‑1 (MQ=255)
       ccATAAGTCTGCCATTTGTGAACCTTTGCAggggg                             >  1:4363516/1‑35 (MQ=255)
       ccATAAGTCTGCCATTTGTGAACCTTTGCAggggg                             >  1:12919080/1‑35 (MQ=255)
        cATAAGTCTGCCATTTGTGAACCTTTGCAGGGGGa                            >  1:8649425/1‑35 (MQ=255)
        aagggcatactcgttattccattacgGCAGGGGGa                            <  1:2506501‑M1/9‑1 (MQ=255)
        aagggcatactcgttattccattacgGCAGGGGGa                            <  1:5518317‑M1/9‑1 (MQ=255)
         aTAAGTCTGCCATTTGTGAACCTTTGCAGGGGGaa                           <  1:18598727/35‑1 (MQ=255)
          tAAGTCTGCCATTTGTGAACCTTTGCAGGGGGaaa                          <  1:8450934/35‑1 (MQ=255)
          tAAGTCTGCCATTTGTGAACCTTTGCAGGGGGaaa                          >  1:5836922/1‑35 (MQ=255)
          gggcatactcgttattccattacgGCAGGGggata                          <  1:576541‑M1/11‑3 (MQ=255)
           aaGTCTGCCATTTGTGAACCTTTGCAGGGGGaaaa                         >  1:11726297/1‑35 (MQ=255)
           aaGTCTGCCATTTGTGAACCTTTGCAGGGGGaaaa                         >  1:7462250/1‑35 (MQ=255)
            aggcTGCCATTTGTGAACCTTTGCAGGGGGAAAAc                        <  1:1643073/32‑1 (MQ=255)
            aGTCTGCCATTTGTGAACCTTTGCAGGGGGAAAAc                        <  1:18181793/35‑1 (MQ=255)
            aGTCTGCCATTTGTGAACCTTTGCAGGGGGAAAAc                        <  1:15673169/35‑1 (MQ=255)
            aGTCTGCCATTTGTGAACCTTTGCAGGGGGAAAAc                        <  1:15027668/35‑1 (MQ=255)
            aGTCTGCCATTTGTGAACCTTTGCAGGGGGAAAAc                        >  1:18683750/1‑35 (MQ=255)
             gTCTGCCATTTGTGAACCTTTGCAGGGGGAAAACg                       <  1:4928387/35‑1 (MQ=255)
             catactcgttattccattacgGCAGGgggaaaccg                       <  1:10834086‑M1/14‑4 (MQ=255)
             catactcgttattccattacgGCAGGGGGAAAACg                       <  1:1618834‑M1/14‑1 (MQ=255)
               cTGCCATTTGTGAACCTTTGCAGGGGGAAAACGcc                     <  1:10998850/35‑1 (MQ=255)
                tGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCt                    >  1:16305664/1‑35 (MQ=255)
                tGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCt                    <  1:412486/35‑1 (MQ=255)
                tGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCt                    >  1:5255423/1‑35 (MQ=255)
                tGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCt                    <  1:694023/35‑1 (MQ=255)
                tGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCt                    >  1:2045125/1‑35 (MQ=255)
                 gCCATTTGTGAACCTTTGCAGGGGGAAAACGCCTg                   >  1:10036862/1‑35 (MQ=255)
                 gCCATTTGTGAACCTTTGCAGGGGGAAAACGCCTg                   >  1:18542053/1‑35 (MQ=255)
                  ccATTTGTGAACCTTTGCAGGGGGAAAACGCCTgg                  <  1:16148569/35‑1 (MQ=255)
                  ccATTTGTGAACCTTTGCAGGGGGAAAACGCCTgg                  <  1:2747089/35‑1 (MQ=255)
                   cATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGa                 <  1:9162388/35‑1 (MQ=255)
                   cATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGa                 >  1:14078194/1‑35 (MQ=255)
                   cATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGa                 <  1:10707509/35‑1 (MQ=255)
                   cATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGa                 <  1:3407418/35‑1 (MQ=255)
                   cATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGa                 <  1:4602913/35‑1 (MQ=255)
                    aTTTGTGAACCTTTGCAGGGGGAAAACGCCTGGAg                >  1:19106592/1‑35 (MQ=255)
                    aTTTGTGAACCTTTGCAGGGGGAAAACGCCTGGAg                >  1:6227486/1‑35 (MQ=255)
                     tttGTGAACCTTTGCAGGGGGAAAACGCCTGGAGt               >  1:18103667/1‑35 (MQ=255)
                      ttGTGAACCTTTGCAGGGGGAAAACGCCTGTAGtt              >  1:5335516/1‑35 (MQ=255)
                      ttGTGAACCTTTGCAGGGGGAAAACGCCTGGAGtt              <  1:14022638/35‑1 (MQ=255)
                      ttGTGAACCTTTGCAGGGGGAAAACGCCTGGAGtt              <  1:11041628/35‑1 (MQ=255)
                      ttGTGAACCTTTGCAGGGGGAAAACGCCTGGAGtt              >  1:3089158/1‑35 (MQ=255)
                      ttGTGAACCTTTGCAGGGGGAAAACGCCTGGAGtt              >  1:19488285/1‑35 (MQ=255)
                      ttGTGAACCTTTGCAGGCGGAAAACGCCTGGAGtt              >  1:19789903/1‑35 (MQ=255)
                       tgtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTa             >  1:15806081/1‑35 (MQ=255)
                       tgtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTa             <  1:13780858/35‑1 (MQ=255)
                       tgtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTa             >  1:3963615/1‑35 (MQ=255)
                       tgtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTa             >  1:11440395/1‑35 (MQ=255)
                       tgtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTa             >  1:8744858/1‑35 (MQ=255)
                        gtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTAc            >  1:15958020/1‑35 (MQ=255)
                        gtgAACCTTTGCAGGGGGAAAACGCCTGGAGTTAc            <  1:9024939/35‑1 (MQ=255)
                          gAACCTTTGCAGGGGGAAAACGCCTGGAGTTACGc          >  1:17659937/1‑35 (MQ=255)
                          gAACCTTTGCAGGGGGAAAACGCCTGGAGTTACGc          >  1:5734017/1‑35 (MQ=255)
                          gAACCATTGCAGGGGGAAAACGCCTGGAGTTACGc          <  1:674126/35‑1 (MQ=255)
                           aaCCTTTGCAGGGGGAAAACGCCTGGAGTTACGCa         <  1:7412750/35‑1 (MQ=255)
                           aaCCTTTGCAGGGGGAAAACGCCTGGAGTTACGCa         <  1:11698692/35‑1 (MQ=255)
                           aaCCTTTGCAGGGGGAAAACGCCTGGAGTTACGCa         <  1:19236681/35‑1 (MQ=255)
                            aCCTTTGCAGGGGGAAAACGCCTGGAGTTACGCAg        <  1:16811591/35‑1 (MQ=255)
                            aCCTTTGCAGGGGGAAAACGCCTGGAGTTACGCAg        <  1:12015428/35‑1 (MQ=255)
                             ccTTTGCAGGGGGAAAACGCCTGGAGTTACGCAGa       <  1:11256555/35‑1 (MQ=255)
                             ccTTTGCAGGGGGAAAACGCCTGGAGTTACGCAGa       <  1:2688791/35‑1 (MQ=255)
                              cTTTGCAGGGGGAAAACGCCTGGAGTTACGCAGaa      >  1:16738174/1‑35 (MQ=255)
                              cTTTGCAGGGGGAAAACGCCTGGAGTTACGCAGaa      >  1:18395612/1‑35 (MQ=255)
                               tttGCAGGGGGAAAACGCCTGGAGTTACGCAGaaa     <  1:1352430/35‑1 (MQ=255)
                               tttGCAGGGGGAAAACGCCTGGAGTTACGCAGaaa     <  1:18465517/35‑1 (MQ=255)
                                ttGCAGGGGGAAAACGCCTGGAGTTACGCAGaaaa    <  1:35944/35‑1 (MQ=255)
                                ttGCAGGGGGAAAACGCCTGGAGTTACGCAGaaaa    >  1:18852719/1‑35 (MQ=255)
                                 tGCAGGGGTAAAACGCCTGGAGTTACGCAGaaaaa   >  1:14790076/1‑35 (MQ=255)
                                 tGCAGGGGGAAAACGCCTTGAGTTACGCAGaaaaa   >  1:17609353/1‑35 (MQ=255)
                                 tGCAGGGGGAAAACGCCTTGAGTTACGCAGaaaaa   >  1:19545167/1‑35 (MQ=255)
                                 tGCAGGGGGAAAACGCCTGGAGTTACGCAGaaaaa   >  1:2159045/1‑35 (MQ=255)
                                 tGCAGGGGGAAAACGCCTGGAGTTACGCAGaaaaa   >  1:19228999/1‑35 (MQ=255)
                                  |                                  
TGCGCATCCATAAGTCTGCCATTTGTGAACCTTTGCAGGGGGAAAACGCCTGGAGTTACGCAGAAAAAC  >  REL606/866954‑867022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.