New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 866988 =115 (1.120)7 (0.090) 4/38 NT 9.9% coding (1206/2097 nt) yliE conserved inner membrane protein
?REL606 = 4527146 37 (0.450)coding (1137/2637 nt) fimD outer membrane usher protein, type 1 fimbrial synthesis

Only 100 of 104 total aligned reads displayed.

TGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGG  >  REL606/4527112‑4527180
                                  |                                  
tGCAACGTGAAGGGCATACTCGTTATTCCATTACg                                    <  1:865263/35‑1 (MQ=255)
tGCAACGTGAAGGGCATACTCGTTATTCCATTACg                                    >  1:12141370/1‑35 (MQ=255)
tGCAACGTGAAGGGCATACTCGTTATTCCATTACg                                    <  1:7317552/35‑1 (MQ=255)
tGCAACGTGAAGGGCATACTCGTTATTCCATTACg                                    >  1:17283854/1‑35 (MQ=255)
 gCAACGTGAAGGGCATACTCGTTATTCCATTACGg                                   >  1:16271018‑M2/1‑34 (MQ=255)
 gCAACGTGAAGGGCATACTCGTTATTCCATTACGg                                   >  1:8252483‑M2/1‑34 (MQ=255)
 gCAACGTGAAGGGCATACTCGTTATTCCATTACGg                                   >  1:15692301‑M2/1‑34 (MQ=255)
 gCAACGTGAAGGGCATACTCGTTATTCCATTACGg                                   >  1:7451188‑M2/1‑34 (MQ=255)
 gCAACGTGAAGGGCATACTCGTTATTCCATTACGg                                   >  1:4685235‑M2/1‑34 (MQ=255)
  cAACGTGAAGGGCATACTCGTTATTCCATTACGgc                                  <  1:8392629‑M2/35‑3 (MQ=255)
  cAACGTGAAGGGCATACTCGTTATTCCATTACGgc                                  >  1:7207761‑M2/1‑33 (MQ=255)
  cAACGTGAAGGGCATACTCGTTATTCCATTACGgc                                  >  1:15411847‑M2/1‑33 (MQ=255)
  cAACGTGAAGGGCATACTCGTTATTCCATTACGgc                                  >  1:17010600‑M2/1‑33 (MQ=255)
  cAACGTGAAGGGCATACTCGTTATTCCATTACGgc                                  >  1:1479734‑M2/1‑33 (MQ=255)
   aaCGTGAAGGGCATACTCGTTATTCCATTNCGgcn                                 <  1:14466651‑M2/35‑4 (MQ=255)
   aaCGTGAAGGGCATACTCGTTATTCCATTACGgca                                 <  1:2517770‑M2/35‑4 (MQ=255)
   aaCGTGAAGGGCATACTCGTTATTCCATTACGgca                                 >  1:8009087‑M2/1‑32 (MQ=255)
    aCGTGAATGGCATACTCGTTATTCCATTACGgcag                                <  1:14427023‑M2/35‑5 (MQ=255)
    aCGTGAAGGGCATACTCGTTATTCCATTACGgcag                                <  1:3430276‑M2/35‑5 (MQ=255)
    aCGTGAAGGGCATACTCGTTATTCCATTACGgcag                                <  1:16446058‑M2/35‑5 (MQ=255)
    aCGTGAAGGGCATACTCGTTATTCCATTACGgcag                                >  1:5149747‑M2/1‑31 (MQ=255)
    aCGTGAAGGGCATACTCGTTATTCCATTACGgcag                                <  1:1679130‑M2/35‑5 (MQ=255)
    aCGTGAAGGGCATACTCGTTATTCCATTACGgcag                                >  1:1448704‑M2/1‑31 (MQ=255)
    aCGTGAAGGGCATACTCGTTATTCCATTACGgcag                                <  1:8903094‑M2/35‑5 (MQ=255)
     cGTGAAGGGCATACTCGTTATTCCATTACGgcagg                               >  1:17632237‑M2/1‑30 (MQ=255)
     cGTGAAGGGCATACTCGTTATTCCATTACGgcagg                               >  1:4463238‑M2/1‑30 (MQ=255)
     cGTGAAGGGCATACTCGTTATTCCATTACGgcagg                               >  1:15976117‑M2/1‑30 (MQ=255)
     cGTGAAGGGCATACTCGTTATTCCATTACGgcagg                               <  1:10344590‑M2/35‑6 (MQ=255)
      gTGAAGGGCATACTCGTTATTCCATTACGgcaggg                              <  1:20223483‑M2/35‑7 (MQ=255)
      gTGAAGGGCATACTCGTTATTCCATTACGGCAGga                              <  1:16534914/35‑1 (MQ=255)
       tGAAGGGCATACTCGTTATTCCATTACGGCAGgag                             <  1:5590002/35‑1 (MQ=255)
       tGAAGGGCATACTCGTTATTCCATTACGGCAGgag                             <  1:6543849/35‑1 (MQ=255)
        gAAGGGCATACTCGTTATTCCATTACGgcaggggg                            <  1:245634‑M2/35‑9 (MQ=255)
         aaGGGCATACTCGTTATTCCATTACGgcagggggg                           <  1:4844502‑M2/35‑10 (MQ=255)
         aaGGGCATACTCGTTATTCCATTACGgcaggggga                           <  1:2506501‑M2/35‑10 (MQ=255)
         aaGGGCATACTCGTTATTCCATTACGgcaggggga                           <  1:5518317‑M2/35‑10 (MQ=255)
         aaGGGCATACTCGTTATTCCATTACGgcaggggga                           <  1:206927‑M2/35‑10 (MQ=255)
          aGGGCATACTCGTTATTCCATTACGgcaggggaaa                          <  1:19234664‑M2/35‑11 (MQ=255)
          aGGGCATACTCGTTATTCCATTACGGCAGGAGAAt                          <  1:8079469/35‑1 (MQ=255)
           gggCATACTCGTTATTCCATTACGgcaggggggaa                         <  1:18154511‑M2/35‑12 (MQ=255)
           gggCATACTCGTTATTCCATTACGgcagggggaaa                         <  1:4672696‑M2/35‑12 (MQ=255)
           gggCATACTCGTTATTCCATTACGGCAGGAGAATa                         <  1:17650329/35‑1 (MQ=255)
            ggCATACTCGTTATTCCATTACGgcagggggaaaa                        <  1:5496709‑M2/35‑13 (MQ=255)
            ggCATACTCGTTATTCCATTACGgcagggggaaaa                        <  1:20153165‑M2/35‑13 (MQ=255)
            ggCATACTCGTTATTCCATTACGGCAGGAGAGTAc                        <  1:16990690/35‑1 (MQ=255)
            ggCATACTCGTTATTCCATTACGGCAGGAGAATAc                        <  1:7628576/35‑1 (MQ=255)
            ggCATACTCGTTATTCCATTACGGCAGGAGAATAc                        <  1:19683150/35‑1 (MQ=255)
            ggCATACTCGTTATTCCATTACGGCAGGAGAATAc                        <  1:13978829/35‑1 (MQ=255)
             gCATACTCGTTATTCCATTACGgcagggggaaaac                       <  1:4959292‑M2/35‑14 (MQ=255)
             gCATACTCGTTATTCCATTACGGCAGGAGAATAcc                       <  1:6328861/35‑1 (MQ=255)
             gCATACTCGTTATTCCATTACGGCAGGAGAATAcc                       <  1:2511297/35‑1 (MQ=255)
              cATACTCGTTATTCCATTACGgcagggggaaaccg                      <  1:10834086‑M2/35‑15 (MQ=255)
              cATACTCGTTATTCCATTACGgcagggggaaaacg                      <  1:1618834‑M2/35‑15 (MQ=255)
              cATACTCGTTATTCCATTACGGCAGGGGAATaacc                      >  1:6161223/1‑32 (MQ=37)
              cATACTCGTTATTCCATTACGGCAGGAGAATACCg                      <  1:7759743/35‑1 (MQ=255)
              cATACTCGTTATTCCATTACGGCAGGAGAATACCg                      <  1:6959466/35‑1 (MQ=255)
              cATACTCGTTATTCCATTACGGCAGGAGAATACCg                      <  1:3291290/35‑1 (MQ=255)
               aTACTCGTTATTCCATTGCGGCAGGAGAATACCGt                     <  1:5559549/35‑1 (MQ=255)
               aTACTCGTTATTCCATTACGGCAGGAGAATACCGt                     <  1:2957012/35‑1 (MQ=255)
                tACTCGTTATTCCATTACGgcagggggaaaccgca                    <  1:19759969‑M2/35‑17 (MQ=255)
                tACTCGTTATTCCATTACGGCAGGAGAATACCGTa                    <  1:17114969/35‑1 (MQ=255)
                 aCTCGTTATTCCATTACGGCAGGGGGATACCGTAg                   >  1:19445946/1‑35 (MQ=37)
                 aCTCGTTATTCCATTACGGCAGGGGGATACCCTAg                   >  1:7422888/1‑35 (MQ=25)
                 aCTCGTTATTCCATTACGGCAGGAGAATACCGTAg                   <  1:6336316/35‑1 (MQ=255)
                 aCTCGTTATTCCATTACGGCAGGAGAATACCGTAg                   <  1:13658792/35‑1 (MQ=255)
                  cTCGTTATTCCATTACGTCAGGAGAATACCGTAGt                  <  1:2541549/35‑1 (MQ=255)
                  cTCGTTATTCCATTACGGCAGGGGGATACCGTAGt                  >  1:14405528/1‑35 (MQ=37)
                  cTCGTTATTCCATTACGGCAGGGGAAAACCGCAgg                  >  1:16507360/1‑34 (MQ=21)
                   tCGTTATTCCATTACGGCAGGAGAATACCGTAGTg                 <  1:16479415/35‑1 (MQ=255)
                   tCGTTATTCCATTACGGCAGGAGAATACCGTAGTg                 <  1:2705277/35‑1 (MQ=255)
                    cGTTATTCCATTACGGCAGGGGGAGACCGTAGGgg                >  1:9080053/1‑35 (MQ=16)
                    cGTTATTCCATTACGGCAGGAGAATACCGTAGTgg                <  1:16315210/35‑1 (MQ=255)
                    cGTTATTCCATTACGGCAGGAGAATACCGTAGTgg                <  1:18610228/35‑1 (MQ=255)
                    cGTTATACCATTACGGCAGGGGGATACCGTAGTgg                >  1:5371609/1‑35 (MQ=25)
                     gTTATTCCATTACGGCAGGAGAATACCGTAGTGGa               <  1:1799341/35‑1 (MQ=255)
                      ttATTCCATTACGGCAGGAGAATACCGTAGTGGaa              <  1:20896/35‑1 (MQ=255)
                       tATTCCATTACGGCAGGGGGATAACGTAGGGGaaa             >  1:16737161/1‑35 (MQ=19)
                       tATTCCATTACGGCAGGAGAATACCGTAGTGGaaa             <  1:2883609/35‑1 (MQ=255)
                       tATTCCATTACGGCAGGAGAATACCGTAGTGGaaa             <  1:15996367/35‑1 (MQ=255)
                         ttCCATTACGGCAGGAGAATACCGTAGTGGAAATg           <  1:9254891/35‑1 (MQ=255)
                         ttCCATTACGGCAGGAGAATACCGTAGTGGAAATg           <  1:162705/35‑1 (MQ=255)
                          tCCATTACGGCAGGAGAATACCGTAGTGGAAATgc          <  1:17779233/35‑1 (MQ=255)
                          tCCATTACGGCAGGAGAATACCGTAGTGGAAATgc          <  1:16664775/35‑1 (MQ=255)
                              ttACGGCAGGAGAATACCGTAGTGGAAATGCgcag      <  1:9263679/35‑1 (MQ=255)
                              ttACGGCAGGAGAATACCGTAGTGGAAATGCgcag      <  1:4048355/35‑1 (MQ=255)
                              ttACGGCAGGAGAATACCGTAGTGGAAATGCgcag      <  1:14666629/35‑1 (MQ=255)
                              ttACGGCAGGAGAATACCGTAGTGGAAATGCgcag      <  1:5897388/35‑1 (MQ=255)
                               tACGGCAGGAGAATACCGTAGTGGAAATGCgcagc     <  1:6339249/35‑1 (MQ=255)
                               tACGGCAGGAGAATACAGTAGTGGAAATGCgcagc     <  1:13559308/35‑1 (MQ=255)
                                aCGGCAGGAGAATACCGTAGTGGAAATGCgcagca    <  1:11329488/35‑1 (MQ=255)
                                aCGGCAGGAGAATACCGTAGTGGAAATGCgcagca    <  1:6014330/35‑1 (MQ=255)
                                 cGGCAGGAGAATACCGTAGTGGAAATGCGcagcag   <  1:550290/35‑1 (MQ=255)
                                 cGGCAGGAGAATACCGTAGTGGAAATGCGcagcag   <  1:15932064/35‑1 (MQ=255)
                                 cGGCAGGAGAATACCGTAGTGGAAATGCGcagcag   >  1:20128543/1‑35 (MQ=255)
                                 cGGCAGGAGAATACCGTAGTGGAAATGCGcagcag   <  1:8321220/35‑1 (MQ=255)
                                 cGGCAGGAGAATACCGTAGTGGAAATGCGcagcag   <  1:10937234/35‑1 (MQ=255)
                                  ggCAGGAGAATACCGTAGTGGAAATGCGCAGCAgg  <  1:11499348/35‑1 (MQ=255)
                                  ggCAGGAGAATACCGTAGTGGAAATGCGCAGCAgg  >  1:11028163/1‑35 (MQ=255)
                                  ggCAGGAGAATACCGTAGTGGAAATGCGCAGCAgg  >  1:8417672/1‑35 (MQ=255)
                                  ggCAGGAGAATACCGTAGTGGAAATGCGCAGCAgg  <  1:19607765/35‑1 (MQ=255)
                                  |                                  
TGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGG  >  REL606/4527112‑4527180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.