New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 640115 =106 (1.030)28 (0.380) 5/34 NT 24.6% intergenic (+33/+22) cspE/ccrB cold shock protein E/camphor resistance protein CrcB
?REL606 2746531 = 97 (1.330)coding (671/873 nt) hypB GTP hydrolase involved in nickel liganding into hydrogenases

Only 100 of 238 total aligned reads displayed.

CTTTCCGTTACCGAAGGTGAAGACAAACCGCTGAAATATCCGCATATGTTTGCCGCCGCCTCGCTGATG  >  REL606/2746497‑2746565
                                  |                                  
cTTTCCGTTACCGAAGGTGAAGACAAACCGCTGaa                                    >  1:11301154/1‑35 (MQ=255)
 tttCCGTTACCGAAGGTGAAGACAAACCGCTGaaa                                   >  1:10036353/1‑35 (MQ=255)
     cGTTACCGAAGGTGAAGACAAACCGCTGAAATATc                               >  1:12324214/1‑35 (MQ=255)
      gTTACCTAAGGTGAAGACAAACCGCTGAAATATcc                              >  1:7407851/1‑35 (MQ=255)
       ttACCGAAGGTGAAGACAAACCGCTGAAATATcca                             >  1:249256/1‑34 (MQ=255)
         aCCGAAGGTGAAGACAAACCGCTGAAATATCCGCa                           >  1:20259139/1‑35 (MQ=255)
         aCCGAAGGTGAAGACAAACCGCTGAAATATCCGCa                           >  1:11876849/1‑35 (MQ=255)
          ccGAAGGTGAAGACAAACCGCTGAAATATCCGCat                          >  1:8514345/1‑35 (MQ=255)
          ccGAAGGTGAAGACAAACCGCTGAAATATCCGCat                          >  1:19548461/1‑35 (MQ=255)
          ccGAAGGTGAAGACAAACCGCTGAAATATCCGCat                          >  1:10219254/1‑35 (MQ=255)
          ccGAAGGTGAAGACAAACCGCTGAAATATCCGCat                          >  1:1424060/1‑35 (MQ=255)
           cGAATGTGAAGACAAACCGCTGAAATATCCGCata                         >  1:6102584/1‑35 (MQ=255)
           cGAAGGTGAAGACAAACCGCTGAAATATCCGCata                         >  1:20100289/1‑35 (MQ=255)
           cGAAGGTGAAGACAAACCGCTGAAATATCCGCata                         >  1:6863341/1‑35 (MQ=255)
           cGAAGGTGAAGACAAACCGCTGAAATATCCGCata                         >  1:17797079/1‑35 (MQ=255)
           cGAAGGTGAAGACAAACCGCTGAAATATCCGCata                         >  1:8112332/1‑35 (MQ=255)
           cGAAGGTGAAGACAAACCGCTGAAATATCCGCata                         >  1:16817436/1‑35 (MQ=255)
           cGAAGGTGAAGACAAACCGCTGAAATATCCGCata                         >  1:10950149/1‑35 (MQ=255)
            gAAGGTGAAGACAAACCGCTGAAATATCCGCatat                        >  1:1516302/1‑35 (MQ=255)
            gAAGGTGAAGACAAACCGCTGAAATATCCGCatat                        >  1:1441865/1‑35 (MQ=255)
            gAAGGTGAAGACAAACCGCTGAAATATCCGCatat                        >  1:19744862/1‑35 (MQ=255)
            gAAGGTGAAGACAAACCGCTGAAATATCCGCatat                        >  1:7190843/1‑35 (MQ=255)
            gAAGGTGAAGACAAACCGCTGAAATATCCGCatat                        >  1:17984163/1‑35 (MQ=255)
             aaGGTGAAGACAAACCGCTGAAATATCCGCATATg                       >  1:15422858/1‑35 (MQ=255)
             aaGGTGAAGACAAACCGCTGAAATATCCGCATATg                       >  1:16076506/1‑35 (MQ=255)
             aaGGTGAAGACAAACCGCTGAAATATCCGCATATg                       >  1:14760684/1‑35 (MQ=255)
             aaGGTGAAGACAAACCGCTGAAATATCCGCATATg                       >  1:5444133/1‑35 (MQ=255)
             aaGGTGAAGACAAACCGCTGAAATATCCGCATATg                       >  1:7295662/1‑35 (MQ=255)
             aaGGTGAAGACAAACCGCTGAAATATCCGCATATg                       >  1:11685089/1‑35 (MQ=255)
             aaGGTGAAGACAAACCGCTGAAATATCCGCATATg                       >  1:9028683/1‑35 (MQ=255)
              aGGTGAAGACAAACCGCTGAAATATCCGCATATGt                      >  1:5781791/1‑35 (MQ=255)
              aGGTGAAGACAAACCGCTGAAATATCCGCATATGt                      >  1:12850988/1‑35 (MQ=255)
               gggaaaaaaaacccgctgaAATATCCGCATATGtt                     <  1:19852789‑M2/16‑1 (MQ=255)
               ggTGAAGACAAACCGCTGAAATATCCGCATATGtt                     >  1:5094094/1‑35 (MQ=255)
               ggTGAAGACAAACCGCTGAAATATCCGCATATGtt                     >  1:12604184/1‑35 (MQ=255)
               gataaaaaaaacccgctgaAATATCCGCATATGtt                     <  1:15676456‑M2/16‑1 (MQ=255)
                gtaaaGAAAAGCCGCTGAAATATCCGCATATGttt                    <  1:16225101/32‑1 (MQ=25)
                gaaaaaaaaaaccgctgaAATATCCGCATATGttt                    <  1:16724227‑M2/17‑1 (MQ=255)
                 tGAAGACAAACCGCTGAAATATCCGCATNTGTTTn                   >  1:5033318/1‑35 (MQ=255)
                 aaaagaaaacccgctgaAATATCCGCATATGTTTg                   <  1:923192‑M2/18‑1 (MQ=255)
                  gAAGACAAACCGCTGAAATATCCGCATATGTTTgc                  >  1:17058334/1‑35 (MQ=255)
                  gAAGACAAACCGCTGAAATATCCGCATATGTTTgc                  >  1:6324387/1‑35 (MQ=255)
                  aaaaaaaccccgctgaAATATCCGCATATGTTTgc                  <  1:18978217‑M2/19‑1 (MQ=255)
                  aaaaaaaacccgctgaAATATCCGCATATGTTTgc                  <  1:5658159‑M2/19‑1 (MQ=255)
                  aaaGACAAACCGCTGAAATATCAGCATATGTTTgc                  <  1:17412460/34‑1 (MQ=255)
                   aaaaaaacccgctgaAATATCCGCATATGTTTgcc                 <  1:12025664‑M2/20‑1 (MQ=255)
                   aaaaaaacccgctgaAATATCCGCATATATTTgcc                 <  1:14404863‑M2/20‑1 (MQ=255)
                   aaGACAAACCGCTTAAATATCCGCATATGTTTgcc                 >  1:17350274/1‑35 (MQ=255)
                   aaGACAAACCGCTGAAATATCCGCATATGTTTgcc                 >  1:8319501/1‑35 (MQ=255)
                   aaGACAAACCGCTGAAATATCCGCATATGTTTgcc                 >  1:1999743/1‑35 (MQ=255)
                    aaaaaacccgctgaAATATCCGCATATGTTTgccg                <  1:10609030‑M2/21‑1 (MQ=255)
                    aGACATACCGCTGAAATATCCGCATATGTTTgccg                <  1:2290718/35‑1 (MQ=255)
                    aGACAAACCGCTGAAATATCCGCATATGTTTgccg                >  1:20169751/1‑35 (MQ=255)
                    aGACAAACCGCTGAAATATCCGCATATGTTTgccg                >  1:1721460/1‑35 (MQ=255)
                     gACAAACCGCTGAAATATCCGCATATGTTTgccgc               >  1:15764925/1‑35 (MQ=255)
                     gACAAACCGCTGAAATATCCGCATATGTTTgccgc               >  1:4679014/1‑35 (MQ=255)
                     aaaaacccgctgaAATATCCGCATATGTTTgccgc               <  1:4296574‑M2/22‑1 (MQ=255)
                      aCAAACCGCTGAAATATCCGCATATGTTTgccgcc              >  1:2840141/1‑35 (MQ=255)
                      aCAAACCGCTGAAATATCCGCATATGTTTgccgcc              >  1:13942451/1‑35 (MQ=255)
                      aCAAACCGCTGAAATATCCGCATATGTTTgccgcc              >  1:16025001/1‑35 (MQ=255)
                      aCAAACCGCTGAAATATCCGCATATGTTTgccgcc              >  1:6222932/1‑35 (MQ=255)
                      aCAAACCGCTGAAATATCCGCATATGTTTgccgcc              >  1:689637/1‑35 (MQ=255)
                       cAAACCGCTGAAATATCCGCATATGTTTgcagccg             >  1:20437017/1‑35 (MQ=255)
                        aaaCCGCTGAAATATCCGCATATGTTTgccgccgc            >  1:1318087/1‑35 (MQ=255)
                        aaaCCGCTGAAATATCCGCATATGTTTgccgccgc            >  1:13713298/1‑35 (MQ=255)
                        aaaCCGCTGAAATATCCGCATATGTTTgccgccgc            >  1:4742717/1‑35 (MQ=255)
                         aaCCGCTGAAATATCCGCATATGTTTgccgccgcc           >  1:973835/1‑35 (MQ=255)
                          cccgctgaAATATCCGCATATGTTTGCCGCCGCCt          <  1:9633893‑M2/27‑1 (MQ=255)
                          aCCGCTGAAATATCCGCATATGTTTGCCGCCGCCt          >  1:3906769/1‑35 (MQ=255)
                          aCCGCTGAAATATCCGCATATGTTTGCCGCCGCCt          >  1:2987524/1‑35 (MQ=255)
                           ccgttgaAATATCCGCATATGTTTGCCGCCGCCTc         <  1:14931991‑M2/28‑1 (MQ=255)
                           ccgctgaAATATCCGCATATGTTTGCCGCCGCCTc         <  1:9463425‑M2/28‑1 (MQ=255)
                            cgctgaAATATCCGCATATGTTTGCCGCCGCCTCg        >  1:16343230‑M2/7‑35 (MQ=255)
                            cgctgaAATATCCGCATATGTTTGCCGCCGCCTCg        >  1:18658905‑M2/7‑35 (MQ=255)
                            cgctgaAATATCCGCATATGTTTGCCGCCGCCTCg        >  1:7177549‑M2/7‑35 (MQ=255)
                            cgctgaAATATCCGCATATGTTTGCCGCCGCCTCg        >  1:14003968‑M2/7‑35 (MQ=255)
                            cgctgaAATATCCGCATATGTTTGCCGCCGCCTCg        >  1:3225589‑M2/7‑35 (MQ=255)
                            cgctaaAATATCCGCATATGTTTGCCGCCGCCTCg        <  1:5835279‑M2/29‑1 (MQ=255)
                             gctgaAATATCCGCATATGTTTGCCGCCGCCTCGc       >  1:18837714‑M2/6‑35 (MQ=255)
                              ctgaAATATCCGCATATGTTTGCCGCCGCCTCGCt      >  1:8692796‑M2/5‑35 (MQ=255)
                              ctgaAATATCCGCATATGTTTGCCGCCGCCTCGCt      >  1:15307953‑M2/5‑35 (MQ=255)
                              ctgaAATATCCGCATATGTTTGCCGCCGCCTCGCt      >  1:19874877‑M2/5‑35 (MQ=255)
                               tgaAATATCCGCATATGTTTGCCGCCGCCTCGCTg     >  1:4141922‑M2/4‑35 (MQ=255)
                               tgaAATATCCGCATATGTTTGCCGCCGCCTCGCTg     <  1:3704577‑M2/32‑1 (MQ=255)
                               tgaAATATCCGCATATGTTTGCCGCCGCCTCGCTg     >  1:13581892‑M2/4‑35 (MQ=255)
                               gaaAATATCCGCATATGTTTGCCGCCGCCTCGCTg     <  1:13323487‑M2/32‑1 (MQ=255)
                                gaAATATCCGCATATGTTTGCCGCCGCCTCGCTGa    >  1:16910309‑M2/3‑35 (MQ=255)
                                gaAATATCCGCATATGTTTGCCGCCGCCTCGCTGa    >  1:4506377‑M2/3‑35 (MQ=255)
                                gAAATATCCGCATATGTTTGCCGCCGCCCCGCCGa    >  1:20367854/1‑35 (MQ=37)
                                aaAATATCCGCATATGTTTGCCGCCGCCTCGCTGa    <  1:13016532‑M2/33‑1 (MQ=255)
                                aaAATATCCGCATATGTTTGCCGCCGCCTCGCTGa    <  1:5423459‑M2/33‑1 (MQ=255)
                                aaAATATCCGCATATGTTTGCAGCCGCCTCGCTGa    <  1:11126324‑M2/33‑1 (MQ=255)
                                aaAATACCCGCATATGTTTGCCGCCGCCTCGCTGa    <  1:84256‑M2/33‑1 (MQ=255)
                                 aAATATCCGCATATGTTTGCCGCCGCCTCGCTGAt   <  1:7118327‑M2/34‑1 (MQ=255)
                                 aAATATCCGCATATGTTTGCCGCCGCCTCGCTGAt   >  1:13047306‑M2/2‑35 (MQ=255)
                                 aAATATCCGCATATGTTTGCCGCCGCCTCGCTGAt   <  1:3808837‑M2/34‑1 (MQ=255)
                                 aAATATCCGCATATGTTTGCCGCCGCCTCGCTGAt   >  1:18105474‑M2/2‑35 (MQ=255)
                                  aaTATCCGCATATGTTTGCCGCCGCCTCGCTGAtg  >  1:12230575/1‑35 (MQ=255)
                                  aaTATCCGCATATGTTTGCCGCCGCCTCGCTGAtg  >  1:8594419/1‑35 (MQ=255)
                                  aaTATCCGCATATGTTTGCCGCCGCCTCGCTGAtg  >  1:4086037/1‑35 (MQ=255)
                                  |                                  
CTTTCCGTTACCGAAGGTGAAGACAAACCGCTGAAATATCCGCATATGTTTGCCGCCGCCTCGCTGATG  >  REL606/2746497‑2746565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.