New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2979870135 (1.310)6 (0.060) 3/44 NT 6.2% coding (962/981 nt) yggR predicted transporter
?REL606 4245169 = 59 (0.630)coding (456/1080 nt) alr alanine racemase

Only 100 of 210 total aligned reads displayed.

TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTATCAT  >  REL606/2979836‑2979904
                                  |                                  
tCGGGCATGGCAACGTCACAAACGCCCTTCCCCCA                                    >  1:1554551‑M1/1‑35 (MQ=255)
 cGGGCATGGCAACGTCACAAACGCCCTTCCCCCAc                                   >  1:3762927/1‑35 (MQ=255)
 cGGGCATGGCAACGTCACAAACGCCCTTCCCCCAc                                   <  1:6769729/35‑1 (MQ=255)
  gggCATGGCAACGTCACAAACGCCCTTCCCCCAcc                                  >  1:13818524/1‑35 (MQ=255)
  gggCATGGCAACGTCACAAACGCCCTTCCCCCAcc                                  <  1:17303938/35‑1 (MQ=255)
  gggCATGGCAACGTCACAAACGCCCTTCCCCCAcc                                  >  1:4233457/1‑35 (MQ=255)
   ggCATGGCAACGTCACAAACGCCCTTCCCCAAccc                                 <  1:14882005/35‑1 (MQ=255)
    gCATGGCAACGTCACAAACGCCCTTCCCCCACCCg                                >  1:3417251/1‑35 (MQ=255)
     cATGGCAACGTCACAAACGCCCTTCCCCCACCCgg                               <  1:7452056/35‑1 (MQ=255)
     cATGGCAACGTCACAAACGCCCTTCCCCCACCCgg                               >  1:2720561/1‑35 (MQ=255)
     cATGGCAACGTCACAAACGCCCTTCCCCCACCCgg                               >  1:8855686/1‑35 (MQ=255)
     cATGGCAACGTCACAAACGCCCTTCCCCCACCCgg                               >  1:15273432/1‑35 (MQ=255)
      aTGGCAACGTCACAAACGCCCTTCCCCCACCCGGt                              >  1:11176351/1‑35 (MQ=255)
      aTGGCAACGTCACAAACGCCCTTCCCCCACCCGGt                              >  1:6587026/1‑35 (MQ=255)
      aTGGCAACGTCACAAACGCCCTTCCCCCACCCGGt                              >  1:11110456/1‑35 (MQ=255)
      aTGGCAACGTCACAAACGCCCTTCCCCCACCCGGt                              <  1:3840708/35‑1 (MQ=255)
      aTGGCAACGTCACAAACGCCCTTCCCCCACCCGGt                              >  1:18190675/1‑35 (MQ=255)
      aTGGCAACGTCACAAACGCCCTTCCCCCACCCGGt                              >  1:12538509/1‑35 (MQ=255)
       tGGCAACGTCACAAACGCCCTTCCCCCACCCGGTg                             >  1:7473580/1‑35 (MQ=255)
       tGGCAACGTCACAAACGCCCTTCCCCCACCCGGTg                             >  1:7792882/1‑35 (MQ=255)
       tGGCAACGTCACAAACGCCCTTCCCCCACCCGGTg                             >  1:15021906/1‑35 (MQ=255)
         gCAATGTCACAAACGCCCTTCCCCCACCCGGTGCt                           >  1:982156/1‑35 (MQ=255)
         gCAACGTCACAAACGCCCTTCCCCCACCCGGTGCt                           >  1:18028582/1‑35 (MQ=255)
         gCAACGTCACAAACGCCCTTCCCCCACCCGGTGCt                           <  1:12331880/35‑1 (MQ=255)
          cAACGTCACAAACGCCCTTCCCCCACCCGGTGCTg                          >  1:9419270/1‑35 (MQ=255)
          cAACGTCACAAACGCCCTTCCCCCACCCGGTGCTg                          >  1:2870244/1‑35 (MQ=255)
           aaCGTCACAAACGCCCTTCCCCCACCCGGTGCTGa                         <  1:8393046/35‑1 (MQ=255)
           aaCGTCACAAACGCCCTTCCCCCACCCGGTGCTGa                         >  1:14222722/1‑35 (MQ=255)
           aaCGTCACAAACGCCCTTCCCCCACCCGGTGCTGa                         <  1:12998738/35‑1 (MQ=255)
           aaCGTCACAAACGCCCTTCCCCCACCCGGTGCTGa                         >  1:3582598/1‑35 (MQ=255)
           aaCGTCACAAACGCCCTTCCCCCACCCGGTGCTGa                         >  1:4529296/1‑35 (MQ=255)
           aaCGTCACAAACGCCCTTCCCCCACCCGGTGCTGa                         >  1:5686170/1‑35 (MQ=255)
            aCGTCACAAACGCCCTTCCCCCACCCGGTGCTGAt                        <  1:17721588/35‑1 (MQ=255)
            aCGTCACAAACGCCCTTCCCCCACCCGGTGCTGAt                        >  1:15109385/1‑35 (MQ=255)
            aCGTCACAAACGCCCTTCCCCCACCCGGTGCTGAt                        >  1:1315191/1‑35 (MQ=255)
            aCGTCACAAACGCCCTTCCCCCACCCGGTGCTGAt                        <  1:8217299/35‑1 (MQ=255)
            aCGTCACAAACGCCCTTCCCCCACCAGGTGCTGAn                        <  1:10865997/35‑1 (MQ=255)
             cGTCACAAACGCCCTTCCCCCACCCGGTGCTGATa                       >  1:5479596/1‑35 (MQ=255)
             cGTCACAAACGCCCTTCCCCCACCCGGTGCTGATa                       <  1:6123270/35‑1 (MQ=255)
             cGTCACAAACGCCCTTCCCCCACCCGGTGCTGATa                       <  1:864773/35‑1 (MQ=255)
             cGTCACAAACGCCATTCCCCCACCCGGTGCTGATa                       <  1:13697063/35‑1 (MQ=255)
              gTCACAAACGCCCTTCCCCCACCCGGTGCTGATaa                      >  1:15974186/1‑35 (MQ=255)
              gTCACAAACGCCCTTCCCCCACCCGGTGCTGATaa                      <  1:16045154/35‑1 (MQ=255)
               tCACAAACGCCCTTCCCCCACCCTGTGCTGATAAc                     >  1:7264199/1‑35 (MQ=255)
               tCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc                     <  1:4080485/35‑1 (MQ=255)
               tCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc                     <  1:16729406/35‑1 (MQ=255)
               tCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc                     >  1:19262013/1‑35 (MQ=255)
               tCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc                     <  1:18770927/35‑1 (MQ=255)
               tCACAAACGCCCTTCCCCCACCCGGTACTGATAAc                     >  1:12391266/1‑35 (MQ=255)
                cacaAACGCCCTTCCCCCACCCGGTGCTGATAAct                    <  1:11230525/35‑1 (MQ=255)
                cacaAACGCCCTTCCCCCACCCGGTGCTGATAAct                    <  1:10646025/35‑1 (MQ=255)
                 acaAACGCCCTTCCCCCACCCGGTGCTGATAActc                   <  1:17563178/35‑1 (MQ=255)
                  caAACGCCCTTCCCCCACCCGGTGCTGATAActct                  >  1:6882845/1‑35 (MQ=255)
                  caAACGCCCTTCCCCCACCCGGTGCTGATAActct                  >  1:1986094/1‑35 (MQ=255)
                  caAACGCCCTTCCCCCACCCGGTGCTGATAActct                  <  1:19118975/35‑1 (MQ=255)
                  caAACGCCCTTCCCCCACCCGGTGCTGATAActct                  <  1:9287299/35‑1 (MQ=255)
                  caAACGCCCTTCCCCCACCCGGTGCTGATAActct                  <  1:16553123/35‑1 (MQ=255)
                  caAACGCCCTTCCCCCACCCGGTGCTGATAActct                  <  1:7887388/35‑1 (MQ=255)
                   aaaCGCCCTTCCCCCACCCGTTGCTGATAACTctg                 >  1:8280175/1‑35 (MQ=255)
                   aaaCGCCCTTCCCCCACCCGGTGCTGATAACTctg                 >  1:11982785/1‑35 (MQ=255)
                   aaaCGCCCTTCCCCCACCCGGTGCTGATAACTctg                 <  1:3065133/35‑1 (MQ=255)
                   aaaCGCCCTTCCCCCACCCGGTGCTGATAACTctg                 <  1:8997559/35‑1 (MQ=255)
                   aaaCGCCCTTCCCCCACCCGGTGCTGATAACTctg                 <  1:15796172/35‑1 (MQ=255)
                    aaCGCCCTTCCCCCACCCGGTGCTGATAACTctgc                <  1:9126070/35‑1 (MQ=255)
                     aCGCCCTTCCCCCACCCGGTGCTGATAACTctgct               <  1:2939406/35‑1 (MQ=255)
                     aCGCCCTTCCCCCACCCGGTGCTGATAACTctgct               <  1:14193670/35‑1 (MQ=255)
                      cGCCCTTCCCCCACCCGGTGCTGATAACTctgctg              <  1:1281158/35‑1 (MQ=255)
                       gCCCTTCCCCAACCCGGTGCTGATAACTCTGCTGa             <  1:14015172/35‑1 (MQ=255)
                        cccTTCCCCCAgccggtgaatatcgtcagccattt            <  1:5592449‑M1/35‑25 (MQ=255)
                        cccTTCCCCCACCCGGTGCTGATAACTCTGCTGaa            >  1:11403490/1‑35 (MQ=255)
                        cccGTCCCCCAgccggtgaatatcgtcagccattt            <  1:6353918‑M1/35‑25 (MQ=255)
                         ccTTCCCCCAgccggtgaatatcgtcagcaatttt           <  1:234016‑M1/35‑26 (MQ=255)
                         ccTTCCCCCACCCGGTGCTGATAACTCTGCTGaaa           <  1:12155389/35‑1 (MQ=255)
                         ccTTCCCCCACCAGGTGCTGATAACTCTGCTGaaa           <  1:16930745/35‑1 (MQ=255)
                          cTTCCCCCACCCGGTGCTGATAACTCTGCTGAAAc          <  1:7138839/35‑1 (MQ=255)
                          cTTCCCCCACCCGGTGCTGATAACTCTGCTGAAAc          <  1:16479422/35‑1 (MQ=255)
                           ttCCCCCAgccggtgaatatagtcagccattttgc         <  1:11771260‑M1/35‑28 (MQ=255)
                           ttCCCCCACCCGGTGCTGATAACTCTGCTGAAACg         >  1:11316192/1‑35 (MQ=255)
                           ttCCCCCACCCGGTGCTGATAACTCTGCTGAAACg         <  1:19007275/35‑1 (MQ=255)
                           ttCCCCCACCCGGTGCTGATAACTCTGCTGAAACg         >  1:13485004/1‑35 (MQ=255)
                           tccccccagccggtgaatatcgtcagccattttgc         <  1:12286861‑M1/33‑28 (MQ=255)
                            tCCCCCACCCGGTGCTGATAACTCTGCTGAAACGt        <  1:5251154/35‑1 (MQ=255)
                             cccccAgccggtgaatatcgtcagccattttgcgc       <  1:5913218‑M1/35‑30 (MQ=255)
                             cccccACCCGGTGCTGATAACTCTGCTGAAACGtt       <  1:16182597/35‑1 (MQ=255)
                             cccccACCCGGTGCTGATAACTCTGCTGAAACGtt       <  1:17137855/35‑1 (MQ=255)
                             cccccACCCGGTGCTGATAACTCTGCTGAAACGtt       >  1:10517811/1‑35 (MQ=255)
                              ccccACCCGGTGCTGATAACTCTGCTGAAACGTTa      <  1:15743580/35‑1 (MQ=255)
                              ccccACCCGGTGCTGATAACTCTGCTGAAACGTTa      >  1:17632004/1‑35 (MQ=255)
                               cccAgccggtgaatatcgtcagccattttgcgcgc     <  1:15680501‑M1/35‑32 (MQ=255)
                               cccACCCGGTGCTGATAACTCTGCTGAAACGTTat     >  1:1740755/1‑35 (MQ=255)
                                ccACCCGGTGCTGATAACTCTGCTGAAACGTTatc    <  1:17896496/35‑1 (MQ=255)
                                 cAgccggtgaatatcgtcagccatttttcgcgcgc   >  1:877193‑M1/1‑2 (MQ=255)
                                 cAgccggtgaatatcgtcagccatttttcgcgcgc   >  1:2128167‑M1/1‑2 (MQ=255)
                                 cAgccggtgaatatcgccagccattttgcgcgcgc   >  1:11367485‑M1/1‑2 (MQ=255)
                                 cACCCGGTGCTGATAACTCTGCTGAAACGTTatca   >  1:8024995/1‑35 (MQ=255)
                                 cACCCGGTGCTGATAACTCTGCTGAAACGTTatca   <  1:4458405/35‑1 (MQ=255)
                                  agccggtgaatatcgtcagccatttttcgcgcgcg  >  1:19913371‑M1/1‑1 (MQ=255)
                                  aCCCGGTGCTGATAACTCTGCTGAAACGTTatcat  <  1:18394445/35‑1 (MQ=255)
                                  aCCCGGTGCTGATAACTCTGCTGAAACGTTatcat  >  1:17067978/1‑35 (MQ=255)
                                  aCCCGGTGCTGATAACTCTGCTGAAACGTTatcat  <  1:10003235/35‑1 (MQ=255)
                                  |                                  
TCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTATCAT  >  REL606/2979836‑2979904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.