New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 68792162 (0.600)12 (0.130) 4/44 NT 12.4% coding (1883/1947 nt) nagE fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA components
?REL606 970674 = 112 (1.190)intergenic (‑27/+28) pflB/focA pyruvate formate lyase I/formate transporter

Only 100 of 177 total aligned reads displayed.

TCGGACATGTAACACCTACCTTCTTAAGTGGATTTTTTATTTACTGCGTACTTCGACAACCATTAATGG  >  REL606/970640‑970708
                                  |                                  
tggtttgcagcaatatcgacgatttcagtggcttt                                    >  1:16818460‑M2/35‑35 (MQ=255)
tCGGACATGTAACACCTACCTTCTTAAGTGGAttt                                    >  1:19845325/1‑35 (MQ=255)
tCGGACATGTAACACCTACCTTCTTAAGTGGAttt                                    <  1:10389385/35‑1 (MQ=255)
tCGGACATGTAACACCTACCTTCTTAAGTGGAttt                                    >  1:10964465/1‑35 (MQ=255)
tCGGACATGTAACACCTACCTTCTTAAGTGGAttn                                    <  1:5912232/35‑1 (MQ=255)
 ggtttgcagcaatatcgacgatttcagtggctttt                                   >  1:14865835‑M2/34‑35 (MQ=255)
 ggtttgcagcaatatcgacgatttcagtggctttt                                   >  1:13833834‑M2/34‑35 (MQ=255)
 cGGACATGTAACACCTACCTTCTTAAGTGGAtttt                                   <  1:5798114/35‑1 (MQ=255)
 cGGACATGTAACACCTACCTTCTTAAGTGGAtttt                                   <  1:13755434/35‑1 (MQ=255)
 cGGACATGTAACACCTACCTTCTTAAGTGGAtttt                                   >  1:17181563/1‑35 (MQ=255)
 cGGACATGTAACACCTACCTTCTTAAGTGGAtttt                                   <  1:414432/35‑1 (MQ=255)
  gtttgcagcaatatcgacgatttcagtggcttttt                                  >  1:7092271‑M2/33‑35 (MQ=255)
  gtttgcagcaatatcgacgatttcagtggctttat                                  >  1:19049115‑M2/33‑33 (MQ=255)
   gACATGTAACACCTACCTTCTTAAGTGGAtttttt                                 <  1:13198559/35‑1 (MQ=255)
    ttgcagcaatatcgacgatttcagtggcttTttta                                >  1:10681714‑M2/31‑35 (MQ=255)
    aCATGTAACACCTACCTTCTTAAGTGGATTTttta                                >  1:6613402/1‑35 (MQ=255)
    aCATGTAACACCTACCTTCTTAAGTGGATTTttta                                >  1:17532098/1‑35 (MQ=255)
     cATGTAACACCTACCTTCTTAAGTGGATTTtttat                               >  1:18803467/1‑35 (MQ=255)
     cATGTAACACCTACCTTCTTAAGTGGATTTtttat                               <  1:10984112/35‑1 (MQ=255)
     cATGTAACACCTACCTTCTTAAGTGGATTTtttat                               >  1:19762837/1‑35 (MQ=255)
      gcagcaatatcgacgatttcagtggcttTattatt                              >  1:18974411‑M2/29‑35 (MQ=255)
      aTGTAACACCTACCTTCTTAAGTGGATTTtttatt                              >  1:18343406/1‑35 (MQ=255)
      aTGTAACACCTACCTTCTTAAGTGGATTTtttatt                              >  1:158097/1‑35 (MQ=255)
      aTGTAACACCTACCTTCTTAAGTGGATTTtttatt                              >  1:19214861/1‑35 (MQ=255)
       tGTAACACCTACCTTCTTAAGTGGATTTtttattt                             >  1:11818787/1‑35 (MQ=255)
       tGTAACACCTACCTTCTTAAGTGGATTTtttattt                             <  1:16966429/35‑1 (MQ=255)
       tGTAACACCTACCTTCTTAAGTGGATTTtttattt                             <  1:7826107/35‑1 (MQ=255)
       tGTAACACCTACCTTCTTAAGTGGATTTtttattt                             <  1:20495847/35‑1 (MQ=255)
       tGTAACACCTACCTTCTTAAGTGGATTTtttattt                             >  1:15558778/1‑35 (MQ=255)
       cagcaatatcgacgatttcagtggctttttcatta                             >  1:14518547‑M2/28‑34 (MQ=255)
       cagcaatatcgacgatttcagtggcttTtttattt                             >  1:4856712‑M2/28‑35 (MQ=255)
        gTAACACCTACCTTCTTAAGTGGATTTtttattta                            >  1:16200076/1‑35 (MQ=255)
        gTAACACCTACCTTCTTAAGTGGATTTtttattta                            <  1:10014851/35‑1 (MQ=255)
        gTAACACCTACCTTCTTAAGTGGATTTtttattta                            >  1:13060002/1‑35 (MQ=255)
        agcaatatcgacgatttcagtggcttttttattaa                            >  1:19477626‑M2/27‑33 (MQ=255)
        agcaatatcgacgatttcagtggcttTtttattta                            >  1:13463554‑M2/27‑35 (MQ=255)
        agcaatatcgacgatttcagtggcttTtttattta                            >  1:8357249‑M2/27‑35 (MQ=255)
        agcaatatcgacgatttcagtggcttTttcattta                            >  1:6399151‑M2/27‑35 (MQ=255)
         tAACACCTACCTTCTTAAGTGGATTTTTTATTTAc                           >  1:16578655/1‑35 (MQ=255)
         tAACACCTACCTTCTTAAGTGGATTTTTTATTTAc                           >  1:6409580/1‑35 (MQ=255)
          caatatcgacgatttcagtggcttttttatttaaa                          >  1:11968485‑M2/25‑33 (MQ=255)
          caatatcgacgatttcagtggcttttttatttaaa                          >  1:8214687‑M2/25‑33 (MQ=255)
          aaCACCTACCTTCTTAAGTGGATTTTTTATTTACt                          <  1:18668674/35‑1 (MQ=255)
          aaCACCTACCTTCTTAAGTGGATTTTTTATTTACt                          <  1:10340439/35‑1 (MQ=255)
          aaCACCTACCTTCTTAAGTGGATTTTTTATTTACt                          >  1:17396951/1‑35 (MQ=255)
           acacCTACCTTCTTAAGTGGATTTTTTATTTACTg                         <  1:2085890/35‑1 (MQ=255)
           acacCTACCTTCTTAAGTGGATTTTTTATTTACTg                         >  1:7377423/1‑35 (MQ=255)
           acacCTACCTTCTTAAGTGGATTTTTTATTTACTg                         <  1:16692458/35‑1 (MQ=255)
           acacCTACCTTCTTAAGTGGATTTTTTATTTACTg                         <  1:19680769/35‑1 (MQ=255)
           acacCTACCTTCTTAAGTGGATTTTTTATTTACTg                         <  1:5087468/35‑1 (MQ=255)
           acacCTACCTTCTTAAGTGGATTTTTTATTTACTg                         >  1:1971553/1‑35 (MQ=255)
            cacCTACCTTCTTAAGTGGATTTTTTATTTACTGc                        <  1:4999751/35‑1 (MQ=255)
            cacCTACCTTCTTAAGTGGATTTTTTATTTACTGc                        <  1:5248493/35‑1 (MQ=255)
            cacCTACCTTCTTAAGTGGATTTTTTATTTACTGc                        <  1:1547819/35‑1 (MQ=255)
             acctacctTCTTAAGTGGATTTTTTATTTACTGCg                       <  1:12584962/35‑1 (MQ=255)
             acctacctTCTTAAGTGGATTTTTTATTTACTGCg                       <  1:13569021/35‑1 (MQ=255)
              cctacctTCTTAAGTGGATTTTTTATTTACTGCGt                      >  1:7303611/1‑35 (MQ=255)
              cctacctTCTTAAGTGGATTTTTTATTTACTGCGt                      >  1:17759849/1‑35 (MQ=255)
               ctacctTCTTAAGTGGATTTTTTATTTACTGCGTa                     <  1:9163797/35‑1 (MQ=255)
                tacctTCTTAAGTGGATTTTTTATTTACTGCGTAc                    >  1:12494921/1‑35 (MQ=255)
                tacctTCTTAAGTGGATTTTTTATTTACTGCGTAc                    <  1:4785168/35‑1 (MQ=255)
                 acctTCTTAAGTGGATTTTTTATTTACTGCGTACt                   <  1:9827372/35‑1 (MQ=255)
                 acctTCTTAAGTGGATTTTTTATTTACTGCGTACt                   >  1:10169978/1‑35 (MQ=255)
                  cctTCTTAAGTGGATTTTTTATTTACTGCGTACtt                  <  1:11220693/35‑1 (MQ=255)
                  cctTCTTAAGTGGATTTTTTATTTACTGCGTACtt                  >  1:6980581/1‑35 (MQ=255)
                  cctTCTTAAGTGGATTTTTTATTTACTGCGTACtt                  >  1:6664827/1‑35 (MQ=255)
                  cctTCTTAAGTGGATTTTTTATTTACTGCGTACtt                  <  1:14367525/35‑1 (MQ=255)
                  cctTCTTAAGTGGATTTTTTATTTACTGCGTACtt                  <  1:5722254/35‑1 (MQ=255)
                  cctTCTTAAGTGGATTTTTTATTTACTGCGTACtt                  <  1:19974656/35‑1 (MQ=255)
                  cctTATTAAGTGGATTTTTTATTTACTGCGTACtt                  <  1:18131039/35‑1 (MQ=255)
                  cctTATTAAGTGGATTTTTTATTTACTGCGTACtt                  <  1:16238040/35‑1 (MQ=255)
                   cttcttAAGTGGATTTTTTATTTACTGCGTACTTc                 <  1:8082279/35‑1 (MQ=255)
                   cttcttAAGTGGATTTTTTATTTACTGCGTACTTc                 <  1:3629623/35‑1 (MQ=255)
                    ttcttAAGTGGATTTTTTATTTACTGCGTACTTCg                >  1:4667226/1‑35 (MQ=255)
                    ttcttAAGTGGATTTTTTATTTACTGCGTACTTCg                >  1:16376112/1‑35 (MQ=255)
                    ttcttAAGTGGATTTTTTATTTACTGCGTACTTCg                >  1:11479889/1‑35 (MQ=255)
                     tcttAAGTGGATTTTTTATTTACTGCGTACTTCGa               >  1:16480019/1‑35 (MQ=255)
                     tcttAAGTGGATTTTTTATTTACTGCGTACTTCGa               <  1:8053189/35‑1 (MQ=255)
                     tcttAAGTGGATTTTTTATTTACTGCGTACTTCGa               <  1:11944119/35‑1 (MQ=255)
                      cttAAGTGGATTTTTTATTTACTGCGTACTTCGAc              >  1:19531196/1‑35 (MQ=255)
                      cttAAGTGGATTTTTTATTTACTGCGTACTTCGAc              >  1:18474875/1‑35 (MQ=255)
                      cttAAGTGGATTTTTTATTTACTGCGTACTTCGAc              <  1:5704243/35‑1 (MQ=255)
                      cttAAGTGGATTTTTTATTTACTGCGTACTTCGAc              >  1:15741772/1‑35 (MQ=255)
                      cttAAGTGGATTTTTTATTTACTGCGTACTTCGAc              <  1:10587590/35‑1 (MQ=255)
                        tAAGTGGATTTTTTATTTACTGCGTACTTCGACaa            <  1:14731284/35‑1 (MQ=255)
                        tAAGTGGATTTTTTATTTACTGCGTACTTCGACaa            >  1:20141423/1‑35 (MQ=255)
                         aaGTGGATTTTTTATTTACTGCGTACTTCGACAAc           <  1:15411365/35‑1 (MQ=255)
                         aaGTGGATTTTTTATTTACTGCGTACTTCGACAAc           >  1:909735/1‑35 (MQ=255)
                         aaGTGGATTTTTTATTTACTGCGTACTTCGACAAc           <  1:12123112/35‑1 (MQ=255)
                         aaGTGGATTTTTTATTTACTGCGTACTTCGACAAc           <  1:1180534/35‑1 (MQ=255)
                         aaGTGGATTTTTTATTTACTGCGTACTTCGACAAc           <  1:34633/35‑1 (MQ=255)
                         aaGTGGATTTTTTATTTACTGCGTACTTCGACAAc           <  1:8272144/35‑1 (MQ=255)
                            tGGATTTTTTATTTACTGCGTACTTCGACAACCAt        >  1:12650398/1‑35 (MQ=255)
                            tGGATTTTTTATTTACTGCGTACTTCGACAACCAt        >  1:20296354/1‑35 (MQ=255)
                            tGGATTTTTTATTTACTGCGTACTTCGACAACCAt        >  1:8837189/1‑35 (MQ=255)
                              gATTTTTTATTTACTGCGTACTTCGACAACCATTa      >  1:2702607/1‑35 (MQ=255)
                                 tTTTTATTTACTGCGTACTTCGACAACCATTAATg   >  1:15786843‑M2/2‑35 (MQ=255)
                                 tTTTTATTTACTGCGTACTTCGACAACCATTAATg   >  1:3280050‑M2/2‑35 (MQ=255)
                                  ttttATTTACTGCGTACTTCGACAACCATTAAtgg  >  1:1077079/1‑35 (MQ=255)
                                  ttttATTTACTGCGTACTTCGACAACCATTAAtgg  >  1:12577131/1‑35 (MQ=255)
                                  |                                  
TCGGACATGTAACACCTACCTTCTTAAGTGGATTTTTTATTTACTGCGTACTTCGACAACCATTAATGG  >  REL606/970640‑970708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.