New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3258154 = | 65 (0.630) | 8 (0.110) | 5/34 | NT | 13.0% | coding (1151/1338 nt) | glmM | phosphoglucosamine mutase |
? | REL606 | 3281934 = | 61 (0.840) | coding (122/492 nt) | ptsN | sugar‑specific enzyme IIA component of PTS |
CAGATTCTGGTTAACGTACGTTACACCGCAGGTAGCGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3258194‑3258154 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgaAACAACTTAGCCTGCCGCCTCAGGTGGTTTTTGA > REL606/3281934‑3281967 CAGATTCTGGTTAACGTACGTTACACCGCAGGTAG > 1:7687817/1‑35 CAGATTCTGGTTAACGTACGTTACACCGCAGGGAG > 1:19403441/1‑35 CAGATTCTGGTTAACGTACGTTACACCGCAGGGAG > 1:2744573/1‑35 AGATTCTGGTTAACGTACGTTACACCGCAGGTAGg > 1:4619344/1‑34 GATTCTGGTTAACGTACGTTACACCGCAGGTAGCG > 1:19384226/1‑35 GATTCTGGTTAACGTACGTTACACCGCAGGTAGCG > 1:4576465/1‑35 GATTCTGGTTAACGTACGTTACACCGCAGGGAGCG > 1:13619547/1‑35 ATTCTGGTTAACGTACGTTACACCGCAGGTAGGGG > 1:3915690/1‑35 ATTCTGGTTAACGTACGTTACACCGCAGGTAGCGG > 1:20406304/1‑35 ATTCTGGTTAACGTACGTTACACCGCAGGTAGCGG > 1:11303437/1‑35 ctcGTTAACGTACGTTACACCGCAGGTAGCGGCGA > 1:7692711/4‑35 CTGGTTAACGTACGTTACACCGCATGTAGCGGCGg > 1:17139656/1‑34 CTGGTTAACGTACGTTACACCGCAGGTAGCGGCGA > 1:1476353/1‑35 TGGTTAACGTACGTTACACCGCAGGTAGCGGCGga > 1:11668598/1‑33 GGTTAACGTACGTTACACCGCAGGTAGCGGCGAAc > 1:3488903/1‑34 GGTTAACGTACGTTACACCGCAGGTAGCGGCGAAA > 1:2900768/1‑35 TTAACGTACGTTACACCGCAGGTAGCGGCGAAACA > 1:17549297/1‑35 TAACGTACGTTACACCGCAGGTAGCGGCGAAACcc > 1:1432541/1‑33 TAACGTACGTTACACCGCAGGTAGCGGCGAAACAc > 1:3401707/1‑34 ACGTACGTTACACCGCAGGTAGCGGCGAACCAACc > 1:7286277/1‑34 ACGTACGTTACACCGCAGGTAGCGGCGAAACACCT > 1:18147064/1‑35 CGTACGTTACACCGCAGGTAGCGGCGAAACCACTa > 1:695931/1‑34 CGTACGTTACACCGCAGGTAGCGGCGAAACACCTT > 1:7808690/1‑35 GTACGTTACACCGCAGGTAGCGGCGAAACAACTTg > 1:19759372/1‑34 TACGTTACACCGCAGGTAGCGGCGAAACAACTTAG > 1:8997025/1‑35 ACGTTACACCGCAGGTAGCGGCGAAACCACTTAGC > 1:14330826/1‑35 TTACACCGCAGGTAGCGGCGAAACAACTTAGCATG > 1:4871720/1‑35 CGGCGAAACAACTTAGCCTGCCGCCTCAGGTGGgt > 1:18392172/1‑33 CGGCGAAACAACTTAGCCTGCCGCCTCAGGTGGgt > 1:5451146/1‑33 CGGCGAAACAACTTAGCCTGCCGCCTCAGGTGGgt > 1:3426204/1‑33 CGGCGAAACAACTTAGCCTGCCGCCTCAGGTGGgt > 1:15864828/1‑33 CGGCGAAACAACTTAGCCTGCCGCCTCAGGTGGTT > 1:20592735/1‑35 CGGCGAAACAACTTAGCCTGCCGCCTCAGGTGGTT > 1:15974956/1‑35 GGCGAAACAACTTAGCCTGCCGCCTCAGGTGGGTT > 1:598015/1‑35 GGCGAAACAACTTAGCCTGCCGCCTCAGGTGGGTT > 1:4151264/1‑35 gcaAAACAACTTAGCCTGCCGCCTCAGGTGGTTTT < 1:1771979/32‑1 gcaAAACAACTTAGCCTGCCGCCTCAGGTGGTTTT < 1:12721385/32‑1 GCGAAACAACTTAGCCTGCCGCCTCAGGTGGTTTT > 1:255007/1‑35 CGAAACAACTTAGCCTGCCGCCTCAGGTGGTTTTT > 1:291292/1‑35 CGAAACAACTTAGCCTGCCGCCTCAGGTGGTTTTT > 1:12531262/1‑35 CGAAACAACTTAGCCTGCCGCCTCAGGTGGTTTTT > 1:19809534/1‑35 CGAAACAACTTAGCCTGCCGCCTCAGGTGGGTTTT > 1:1365283/1‑35 CGAAACAACTTAGCCTGCCGCCTCAGGTGGGTTTT > 1:15472409/1‑35 CGAAACAACTTAGCCTGCCGCCTCAGGTGGGTTTT > 1:11696057/1‑35 GAAACAACTTAGCCTGCCGCCTCAGGTTGTTTTTG > 1:15200463/1‑35 GAAACAACTTAGCCTGCCGCCTCAGGTGGTTTTTG > 1:1863262/1‑35 GAAACAACTTAGCCTGCCGCCTCAGGTGGTTTTTG > 1:1877758/1‑35 GAAACAACTTAGCCTGCCGCCTCAGGTGGGTTTTG > 1:16696074/1‑35 AAACAACTTAGCCTGCCGCCTCAGGTGGTTTTTtg > 1:1692975/1‑33 AAACAACTTAGCCTGCCGCCTCAGGTGGTTTTTGA > 1:7627906/1‑35 AAACAACTTAGCCTGCCGCCTCAGGTGGGTTTTGA > 1:4134817/1‑35 CAGATTCTGGTTAACGTACGTTACACCGCAGGTAGCGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3258194‑3258154 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgaAACAACTTAGCCTGCCGCCTCAGGTGGTTTTTGA > REL606/3281934‑3281967 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |