New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 564054 = | 42 (0.410) | 9 (0.120) | 3/34 | NT | 14.5% | coding (2252/2973 nt) | nfrA | bacteriophage N4 receptor, outer membrane subunit |
? | REL606 | 1414711 = | 76 (1.040) | coding (223/276 nt) | racC | predicted protein |
Only 100 of 182 total aligned reads displayed.
TTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACC > REL606/1414677‑1414745 | ttCATTGCAATTAGAGTTGCCAGAAATTCGGCttt > 1:20329868/1‑35 (MQ=255) ttCATTGCAATTAGAGTTGCCAGAAATTCGGCttt < 1:558801/35‑1 (MQ=255) tCATTGCAATTAGAGTTGCCAGAAATTCGGCtttt > 1:17304921/1‑35 (MQ=255) ctggacgttcagtttcgattcttctatcggctttt > 1:924259‑M2/34‑35 (MQ=255) ctggacgttcagtttcgattcttctatcggctttt > 1:19596845‑M2/34‑35 (MQ=255) ctggacgttcagtttcgattcttctatcggctttt > 1:14790910‑M2/34‑35 (MQ=255) ctggacgttcagtttcgattcttctatcggctttt > 1:4632149‑M2/34‑35 (MQ=255) ctggacgttcagtttcgattcttctatcggctttt > 1:13329512‑M2/34‑35 (MQ=255) cATTGCAATTAGAGTTGCCAGAAATTCGGCttttt < 1:8221703/35‑1 (MQ=255) aTTGCAATTAGAGTTGCCAGAAATTCGGCtttttt > 1:4105503/1‑35 (MQ=255) aTTGCAATTAGAGTTGCCAGAAATTCGGCtttttt > 1:4270241/1‑35 (MQ=255) aTTGCAATTAGAGTTGCCAGAAATTCGGCtttttt > 1:14206299/1‑35 (MQ=255) ttGCAATTAGAGTTGCCAGAAATTCGGCttttttt > 1:17655557/1‑35 (MQ=255) ttGCAATTAGAGTTGCCAGAAATTCGGCttttttt < 1:18200346/35‑1 (MQ=255) tGCAATTAGAGTTGCCAGAAATTCGGCtttttttt < 1:16788620/35‑1 (MQ=255) tGCAATTAGAGTTGCCAGAAATTCGGCtttttttt > 1:2312604/1‑35 (MQ=255) acgttcagtttcgattcttctatcggctttttttt > 1:6719512‑M2/30‑35 (MQ=255) acgttcagtttcgattcttctatcggcttttgttt > 1:11615009‑M2/30‑35 (MQ=255) gCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTc > 1:5602193/1‑35 (MQ=255) gCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTc < 1:16060659/35‑1 (MQ=255) gCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTc > 1:3272021/1‑35 (MQ=255) cgttcagtttcgattcttctatcggcttTTTTTTc > 1:9114290‑M2/29‑35 (MQ=255) cgttcagtttcgattcttctatcggcttTTTGTTc > 1:15417947‑M2/29‑35 (MQ=255) cgttcagtttcgattcttctatcggcttTTGTTTc > 1:11993559‑M2/29‑35 (MQ=255) gttcagtttcgattcttctatcggcttTTTTTTCt > 1:9944821‑M2/28‑35 (MQ=255) cgaTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCt > 1:12403820/3‑35 (MQ=255) cAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCt < 1:15746704/35‑1 (MQ=255) cAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCt < 1:4421806/35‑1 (MQ=255) aaTTAGAGTTGCCAGAAATTCTGCTTTTTTTTCTg > 1:6825521/1‑35 (MQ=255) aaTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTg < 1:3047685/35‑1 (MQ=255) aaTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTg > 1:2262011/1‑35 (MQ=255) tcagtttcgattcttctatcggcttTTTTTTTtgg > 1:2650312‑M2/26‑34 (MQ=255) aTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc < 1:8060957/35‑1 (MQ=255) aTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc < 1:13721951/35‑1 (MQ=255) aTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc > 1:18099283/1‑35 (MQ=255) aTTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc > 1:497608/1‑35 (MQ=255) ttAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCg < 1:379240/35‑1 (MQ=255) tAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCgg < 1:20036948/35‑1 (MQ=255) agagTTGCCAGAAATTCGGCTTTTTTTTCTGCggg < 1:18258871/35‑1 (MQ=255) agagTTGCCAGAAATTCGGCTTTTTTTTCTGCggg > 1:11106455/1‑35 (MQ=255) gagTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGc < 1:8036073/35‑1 (MQ=255) gagTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGc > 1:10273581/1‑35 (MQ=255) gTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAg > 1:6362833/1‑35 (MQ=255) gTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAg > 1:18392636/1‑35 (MQ=255) ttGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGa < 1:9025724/35‑1 (MQ=255) ttGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGa > 1:17876176/1‑35 (MQ=255) tGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGAt < 1:18597011/35‑1 (MQ=255) tGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGAt > 1:16509327/1‑35 (MQ=255) tGCCAGAAATTCGGCTTTTTTTTATGCGGGCAGAt < 1:17561097/35‑1 (MQ=255) gCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGAtt > 1:11520380/1‑35 (MQ=255) gCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGAtt < 1:4442985/35‑1 (MQ=255) ccAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTc < 1:1084208/35‑1 (MQ=255) ccAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTc > 1:847472/1‑35 (MQ=255) ccAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTc < 1:14545833/35‑1 (MQ=255) ccAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTc < 1:18906027/35‑1 (MQ=255) cAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCt > 1:18527265/1‑35 (MQ=255) cAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCt > 1:1304917/1‑35 (MQ=255) cAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCt < 1:1932024/35‑1 (MQ=255) aGAGATTCGGCTTTTTTTTCTGCGGGGAGATTCtt > 1:19738249/1‑35 (MQ=37) aGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCtt > 1:16576978/1‑35 (MQ=255) aGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCtt > 1:2341448/1‑35 (MQ=255) aGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCtt < 1:16240332/35‑1 (MQ=255) aGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCtt > 1:757906/1‑35 (MQ=255) gAAATTCGGCTTTTTTTTCTGCGGGCAGATTCttt > 1:15050068/1‑35 (MQ=255) gAAATTCGGCTTTTTTTTCTGCGGGCAGATTCttt > 1:6648300/1‑35 (MQ=255) gAAATTCGGCTTTTTTTTCTGCGGGCAGATTCttt < 1:16016198/35‑1 (MQ=255) gAAATTCGGCTTTTTTTTCTGCGGGCAGATTCttt < 1:13684079/35‑1 (MQ=255) aaaTTCGGCTTTTTTTTCTGCGGGCATATTCTTTc > 1:12515254/1‑35 (MQ=255) aaaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTc > 1:9481984/1‑35 (MQ=255) aaaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTc < 1:11212297/35‑1 (MQ=255) aaaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTc < 1:11588564/35‑1 (MQ=255) aaaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTc > 1:2050042/1‑35 (MQ=255) aaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTcc < 1:10427144/35‑1 (MQ=255) aaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTcc < 1:12123855/35‑1 (MQ=255) aaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTcc > 1:15616336/1‑35 (MQ=255) aaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTcc < 1:2917447/35‑1 (MQ=255) aaTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTcc > 1:3395086/1‑35 (MQ=255) aTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCg > 1:15265470/1‑35 (MQ=255) aTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCg < 1:6234707/35‑1 (MQ=255) aTTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCg < 1:4539015/35‑1 (MQ=255) ttCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGa > 1:18729442/1‑35 (MQ=255) tcggcttTTTTTTCTGCGGGCAGATTCTTTCCGat < 1:17330639‑M2/28‑1 (MQ=255) tcggcttTTTTTTCTGCGGGCAGATTCTTTCCGat < 1:7347305‑M2/28‑1 (MQ=255) tcggcttTTTTTTCTGCGGGCAGATTCTTTCCGat < 1:11884066‑M2/28‑1 (MQ=255) cggcttTTTTTTCTGCGGGCAGATTCTTTCCGata < 1:19219089‑M2/29‑1 (MQ=255) ggcttTTTTTTCTGCGGGCAGATTCTTTCCGatat > 1:15500899‑M2/6‑35 (MQ=255) ggcttTTTTTTCTGCGGGCAGATTCTTTCCGatat < 1:14981562‑M2/30‑1 (MQ=255) ggcttTTTTTTCTGCGGGCAGATTCTTTCCGatat < 1:5938333‑M2/30‑1 (MQ=255) gcttTTTTTTCTGCGGGCAGATTCTTTCCGATATg < 1:14622907‑M2/31‑1 (MQ=255) gcttTTTTTTCTGCGGGCAGATTCTTTCCGATATg < 1:1921095‑M2/31‑1 (MQ=255) gcttTTTTTTCTGCGGGCAGATTCTTTCCGATATg < 1:955887‑M2/31‑1 (MQ=255) cttTTTTTTCTGCGGGCAGATTCTTTCCGATATGc > 1:7734626‑M2/4‑35 (MQ=255) cttTTTTTTCTGCGGGAAGATTCTTTCCGATATGc < 1:2637820‑M2/32‑1 (MQ=255) ttTTTTTTCTGCGGGCAGATTCTTTCCGATATGCa < 1:13407954‑M2/33‑1 (MQ=255) tTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAc > 1:8751531‑M2/2‑35 (MQ=255) tTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAc > 1:6162695‑M2/2‑35 (MQ=255) tTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAc < 1:1552041‑M2/34‑1 (MQ=255) ttttttCTGCGGGCAGATTCTTTCCGATATGCAcc < 1:14985719/35‑1 (MQ=255) ttttttCTGCGGGCAGATTCTTTCCGATATGCAcc < 1:362338/35‑1 (MQ=255) ttttttCTGCGGGCAGATTCTTTCCGATATGCAcc < 1:4087232/35‑1 (MQ=255) | TTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACC > REL606/1414677‑1414745 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |