New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1349554 =66 (0.640)10 (0.130) 4/36 NT 18.6% intergenic (‑146/+222) fabI/ycjD enoyl‑(acyl carrier protein) reductase/hypothetical protein
?REL606 = 3574369 38 (0.490)coding (1504/2043 nt) prlC oligopeptidase A

GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1349592‑1349554
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCTG  <  REL606/3574369‑3574336
                                                                         
GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCT                                        >  1:16149026/1‑35
GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCT                                        >  1:10857580/1‑35
GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCT                                        >  1:17310176/1‑35
GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCT                                        >  1:16335111/1‑35
 AGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTG                                       >  1:4392314/1‑35
 AGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTG                                       >  1:7322736/1‑35
  GAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGC                                      >  1:18316882/1‑35
  GAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGC                                      >  1:5155066/1‑35
  GAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGC                                      >  1:17577495/1‑35
  GAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGC                                      >  1:16598585/1‑35
   AGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCC                                     >  1:10753721/1‑35
   AGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCC                                     >  1:12689574/1‑35
    GGGTTAGGGTGATGGGAAAAGCGCCCCCCCTGCCG                                    >  1:4555014/1‑35
    GGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCG                                    >  1:6186598/1‑35
                     ggAGCGCCCCCCCTGCCGAGTCAGTTTATGGAAAA                   <  1:13773806/33‑1
                     gacGCGCCCCCCCTGCCGAGTCAGTTTATGGAAAA                   <  1:1623841/32‑1
                        cCGCCCCCCCTGCCGAGTCAGTTTATGGAAAACTG                <  1:11568642/34‑1
                        GCGCCCCCCCTGCCGAGTCAGTTTATGGAAAACTG                <  1:7817516/35‑1
                         ccgCCCCCCTGCCGAGTCAGTTTATGGAAAACTGG               <  1:13828613/32‑1
                         CGCCCCCCCTGCCGAGTCAGTTTATGGAAAACTGG               <  1:8172754/35‑1
                          cCCCCCCCTGCCGAGTCAGTTTATGGAAAACTGGT              <  1:15511621/34‑1
                          GCCCCCCCTGCCGAGTCAGTTTATGGAAAACTGGT              <  1:17329054/35‑1
                          GCCCCCCCTGCCGAGTCAGTTTATGGAAAACTGGT              <  1:764330/35‑1
                           ccaCCCCTGCCGAGTCAGTTTATGGAAAACTGGTG             <  1:14999080/32‑1
                           CCCCCCCTGCCGAGTCAGTTTATGGAAAACTGGTG             <  1:3555004/35‑1
                           CCCCCCCTGCCGAGTCAGTTTATGGAAAACTGGTG             <  1:11749451/35‑1
                            CCCCCCTGCCGAGTCAGTTTATGGAAAACTGGTGC            <  1:2716381/35‑1
                            CCCCCCTGCCGAGTCAGTTTATGGAAAACTGGTGC            <  1:754006/35‑1
                             CCCCCTGCCGAGTCAGTTTATGGAAAACTGGTGCT           <  1:19629439/35‑1
                             CCCCCTGCCGAGTCAGTTTATGGAAAACTGGTGCT           <  1:8467093/35‑1
                              CCCCTGCCGAGTCAGTTTATGGAAAACTGGTGCTG          <  1:4121101/35‑1
                               CCCTGCCGAGTCAGTTTATGGAAAACTGGTGCTGG         <  1:4546702/35‑1
                               CCCTGCCGAGTCAGTTTATGGAAAACTGGTGCTGG         <  1:9237841/35‑1
                               CCCTGCCGAGTCAGTTTATGGAAAACTGGTGCTGG         <  1:10632633/35‑1
                                CCTGCCGAGTCAGTTTATGGAAAACTGGTGCTGGG        <  1:15692893/35‑1
                                 CTGCCGAGTCAGTTTATGGAAAACTGGTGCTGGGA       <  1:20057103/35‑1
                                 CTGCCGAGTCAGTTTATGGAAAACTGGTGCTGGGA       <  1:11582145/35‑1
                                 CTGCCGAGTCAGTTTATGGAAAACTGGTGCTGGGA       >  1:16123231/1‑35
                                  TGCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAG      <  1:8262611/35‑1
                                  TGCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAG      <  1:12985701/35‑1
                                   GCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGC     <  1:13374989/35‑1
                                   GCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGC     >  1:1413067/1‑35
                                   GCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGC     <  1:15582757/35‑1
                                   GCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGC     >  1:335257/1‑35
                                   GCCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGC     >  1:20278243/1‑35
                                    CCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCC    >  1:15584467/1‑35
                                    CCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCC    <  1:3605327/35‑1
                                    CCGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCC    >  1:11599565/1‑35
                                     CGAGTCAGTTTATGGAAAACTGGTGCTGGGATCCT   >  1:9295601/1‑35
                                     CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCT   <  1:4473084/35‑1
                                     CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCT   <  1:16756993/35‑1
                                     CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCT   <  1:14458484/35‑1
                                     CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCT   >  1:17175787/1‑35
                                     CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCT   >  1:12819623/1‑35
                                     CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCT   <  1:8409355/35‑1
                                     CGAGTCAGTTTATGGAAAACTGGTGCTGGGAGACT   >  1:315647/1‑35
                                      GAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCTG  <  1:594455/35‑1
                                      GAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCTG  <  1:17822143/35‑1
                                                                         
GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1349592‑1349554
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgAGTCAGTTTATGGAAAACTGGTGCTGGGAGCCTG  <  REL606/3574369‑3574336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.