New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422594 =77 (0.750)21 (0.230) 4/42 NT 25.6% intergenic (‑281/+181) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter
?REL606 2573117 = 55 (0.610)intergenic (‑11/‑196) yfhM/sseA hypothetical protein/3‑mercaptopyruvate sulfurtransferase

Only 100 of 137 total aligned reads displayed.

GGCGGCTACGCGTAACTTTTTCATTTTTCATCCCTGCCACAATGGCCCGTTAGCAACGTCGAATAATTA  >  REL606/2573083‑2573151
                                  |                                  
ggcggcTACGCGTAACTTTTTCATTTTTCATCCCt                                    <  1:15274487/35‑1 (MQ=255)
ggcggcTACGCGTAACTTTTTCATTTTTCATCCCt                                    <  1:8270044/35‑1 (MQ=255)
ggcggcTACGCGTAACTGTTTCATTTTTCATCACt                                    <  1:11862909/35‑1 (MQ=38)
 gcggcTACGCGTAACTTTTTCATTTTTCATCCCTg                                   <  1:17149267/35‑1 (MQ=255)
 gcggcTACGCGTAACTTTTTCATTTTTCATCCCTg                                   <  1:12571778/35‑1 (MQ=255)
  cggcTACGCGTAACTTTTTCATTTTTCATCCCTGc                                  >  1:16470582/1‑35 (MQ=255)
  cggcTACGCGTAACTTTTTCATTTTTCATCCCTGc                                  >  1:20562306/1‑35 (MQ=255)
  cggcTACGCGTAACTTTTTCATTTTTCATCCCTGc                                  <  1:13443791/35‑1 (MQ=255)
   ggcTACGCGTAACTTTTTCATTTTTCATCCCTGcc                                 >  1:2480567/1‑35 (MQ=255)
   ggcTACGCGTAACTTTTTCATTTTTCATCCCTGcc                                 >  1:6572632/1‑35 (MQ=255)
   ggcTACGCGTAACTTTTTCATTTTTCATCCCTGcc                                 <  1:12973451/35‑1 (MQ=255)
   ggcTACGCGTAACTTTTTCATTTTTCATCCCTGcc                                 >  1:17170246/1‑35 (MQ=255)
   ggcTACGCGTAACTTTTTCATTTTTCATCCCTGcc                                 >  1:18126341/1‑35 (MQ=255)
    gcTACGCGTAACTTTTTCATTTTTCATCCCTGCca                                <  1:8130315/35‑1 (MQ=255)
    gcTACGCGTAACTTTTTCATTTTTCATCCCTGCca                                >  1:11587543/1‑35 (MQ=255)
    gcTACGCGTAACTTTTTCATTTTTCATCCCTGCca                                <  1:16648766/35‑1 (MQ=255)
     cTACGCGTAACTTTTTCATTTTTCATCCCTGCcac                               >  1:17601655/1‑35 (MQ=255)
      tACGCGTAACTTTTTCATTTTTCATCCCTGCcaca                              >  1:13911893/1‑35 (MQ=255)
      tACGCGTAACTTTTTCATTTTTCATCCCTGCcaca                              >  1:16407185/1‑35 (MQ=255)
      tACGCGTAACTTTTTCATTTTTCATCCCTGCcaca                              >  1:6339138/1‑35 (MQ=255)
       aCGCGTAACTTTTTCATTTTTCATCCCTGCCACaa                             >  1:7401201/1‑35 (MQ=255)
       aCGCGTAACTTTTTCATTCTTCATCCCTGCcacac                             >  1:9824793/1‑34 (MQ=255)
        cgcgTAACTTTTTCATTTTTCATCCCTGCCACAAt                            >  1:4516071/1‑35 (MQ=255)
         gcgTAACTTTTTCATTTTTCATCCCTGCCACAATg                           >  1:19782554/1‑35 (MQ=255)
         gcgTAACTTTTTCATTTTTCATCCCTGCCACAATg                           >  1:15640725/1‑35 (MQ=255)
          cgTAACTTTTTCATTTTTCATCCCTGCCACAATgg                          >  1:9089902/1‑35 (MQ=255)
          cgTAACTTTTTCATTTTTCATCCCTGCCACAATgg                          >  1:11267142/1‑35 (MQ=255)
            tAACTTTTTCATTTTTCATCCCTGCCACAATGGcc                        >  1:5511032/1‑35 (MQ=255)
             atcTTTTTCTTTTTCCCCCCCTGCCACAATGGccc                       <  1:10482939/33‑1 (MQ=12)
             aaCTTTTTCATTTTTCATCCCTGCCACAATGGccc                       >  1:2446588/1‑35 (MQ=255)
             aaCTTTTTCATTTTTCATCCCTGCCACAATGGccc                       >  1:11850589/1‑35 (MQ=255)
             aaCTTTTTCATTTTTCATCCCTGCCACAATGGccc                       >  1:14580801/1‑35 (MQ=255)
             aaCTTTTTCATTTTTCATCCCTGCCACAATGGccc                       >  1:18198358/1‑35 (MQ=255)
             aaCTTTTTCATTTTTCATCCCTGCCACAATGGccc                       >  1:10339664/1‑35 (MQ=255)
              tttttttcatttttccCCCCTGCCACAATGGCCCg                      <  1:17850539/33‑1 (MQ=25)
              aCTTTTTCATTTTTCATCCCTGCCACAATGGCCCg                      >  1:16902528/1‑35 (MQ=255)
              aCTTTTTCATTTTTCATCCCTGCCACAATGGCCCg                      >  1:2895326/1‑35 (MQ=255)
              aCTTTTTCATTTTTCATCCCTGCCACAATGGCCCg                      >  1:916373/1‑35 (MQ=255)
               cTTTTTCATTTTTCATCCCTGCCACAATGGCCCGt                     >  1:18791443/1‑35 (MQ=255)
               cTTTTTCATTTTTCATCCCTGCCACAATGGCCCGt                     >  1:16318804/1‑35 (MQ=255)
               cTTTTTCATTTTTCATCCCTGCCACAATGGCCCGt                     >  1:15050797/1‑35 (MQ=255)
               cTTTTTCATTTTTCATCCCTGCCACAATGGCCCGt                     >  1:19809010/1‑35 (MQ=255)
                tttttcatttttcaTCCCTGCCACAATGGCCCGtt                    >  1:1887315/1‑35 (MQ=255)
                tttttcatttttcaTCCCTGCCACAATGGCCCGtt                    >  1:18006530/1‑35 (MQ=255)
                tttttcatttttcaTCCCTGCCACAATGGCCCGtt                    >  1:9851575/1‑35 (MQ=255)
                tttttcatttttcaTCCCTGCCACAATGGCCCGtt                    >  1:12418209/1‑35 (MQ=255)
                 ttttcatttttcatCCCTGCCACAATGGCCCGTTa                   >  1:4597261/1‑35 (MQ=255)
                 ttttcatttttcatCCCTGCCACAATGGCCCGTTa                   >  1:13712492/1‑35 (MQ=255)
                  ttttattttcccccccTGCCACAATGGCCCGTTAg                  <  1:5540532‑M2/19‑1 (MQ=255)
                  tttctttttccccCCCTGCCACAATGGCCCGTTAg                  <  1:19415828/35‑1 (MQ=19)
                  tttctttttccccCCCTGCCACAATGGCCCGTTAg                  <  1:14306222/35‑1 (MQ=19)
                   tttattttcccccccTGCCACAATGGCCCGTTAGc                 <  1:2281270‑M2/20‑1 (MQ=255)
                   ttcatttttcatCCCTGCCACAATGGCCCGTTAGc                 >  1:5243515/1‑35 (MQ=255)
                   ttcattttcccccccTGCCACAATGGCCCGTTAGc                 <  1:13859741‑M2/20‑1 (MQ=255)
                   ttcattttcccccccTGCCACAATGGCCCGTTAGc                 <  1:6866884‑M2/20‑1 (MQ=255)
                    tctttttcccccccTGCCACAATGGCCCGTTAGCa                <  1:6294266‑M2/21‑1 (MQ=255)
                    tcatttttcatCCCTGCCACAATGGCCCGTTAGCa                >  1:1766613/1‑35 (MQ=255)
                     ctttttcccccccTGCCACAATGGCCCGTTAGCaa               <  1:13615835‑M2/22‑1 (MQ=255)
                      tttttcccccccTGCCACAATGGTCCGTTAGCAAc              <  1:13895088‑M2/23‑1 (MQ=255)
                      tttttcccccccTGCCACAATGGCCCGTTAGCAAc              <  1:17456784‑M2/23‑1 (MQ=255)
                       tttttcatCCCTGCCACAATGGCCCGTTAGCAACg             >  1:6510768/1‑35 (MQ=255)
                       tttttcatCCCTGCCACAATGGCCCGTTAGCAACg             >  1:2295273/1‑35 (MQ=255)
                        ttttccccccTGCCACAATGGCCCGTTAGCAACGt            <  1:11603582‑M2/25‑1 (MQ=255)
                        ttttcacCCCTGCCACAATGGCCCGTTAGCAACGt            <  1:12602350/35‑1 (MQ=255)
                        tttcccccccTGCCACAATGGCCCGTTAGCAACGt            <  1:11643754‑M2/25‑1 (MQ=255)
                        tttcccccccTGCCACAATGGCCCGTTAGCAACGt            <  1:8911054‑M2/25‑1 (MQ=255)
                        tttcccccccTGCCACAATGGCCCGTTAGCAACGt            <  1:102746‑M2/25‑1 (MQ=255)
                        tttcccccccTGCCACAATGGCCCGTTAGCAACGt            <  1:14088975‑M2/25‑1 (MQ=255)
                         tttcatCCCTGCCACAATGGCCCGTTAGCAACGTc           >  1:13658762/1‑35 (MQ=255)
                         ttcccccccTGCCACAATGGCCCGTTAGCAACGTc           <  1:1842392‑M2/26‑1 (MQ=255)
                         ttcccccccTGCCACAATGGCCCGTTAGCAACGTc           <  1:8569826‑M2/26‑1 (MQ=255)
                         ttcccccccTGCCACAATGGCCCGTTAGCAACGTc           <  1:2438790‑M2/26‑1 (MQ=255)
                         ttcccccccTGCCACAATGGCCCGTTAGCAACGTc           <  1:13576837‑M2/26‑1 (MQ=255)
                          ttcatCCCTGCCACAATGGCCCGTTAGCAACGTCg          >  1:13307034/1‑35 (MQ=255)
                           tccccccTGCCACAATGGCCCGTTAGCAACGTCGa         <  1:4353793‑M2/28‑1 (MQ=255)
                           tcatCCCTGCCACAATGGCCCGTTAGCAACGTCGa         >  1:8572635/1‑35 (MQ=255)
                           tcatCCCTGCCACAATGGCCCGTTAGCAACGTCGa         >  1:8194764/1‑35 (MQ=255)
                           cccccccTGCCACAATGGCCCGTTAGCAACGTCGa         <  1:13066548‑M2/28‑1 (MQ=255)
                            ccccccTGCCACAATGGCCCGTTAGCAACGTCGaa        <  1:9289387‑M2/29‑1 (MQ=255)
                            catCCCTGCCACAATGGCCCGTTATCAACGTCGaa        >  1:16390679/1‑35 (MQ=255)
                             atCCCTGCCACAATGGCCCGTTAGCAACGTCGaat       >  1:17147263/1‑35 (MQ=255)
                             atCCCTGCCACAATGGCCCGTTAGCAACGTCGaat       >  1:4017999/1‑35 (MQ=255)
                             atCCCTGCCACAATGGCCCGTTAGCAACGTCGaat       >  1:17932907/1‑35 (MQ=255)
                             accccTGCCAAAATGGCCCGTTAGCAACGTCGaat       <  1:6221520‑M2/30‑1 (MQ=255)
                              ccccTGCCACAATGGCCCGTTAGCAACGTCGaata      <  1:7448511‑M2/31‑1 (MQ=255)
                               cccTGCCACAATGGCCCGTTAGCAACGTCGaataa     <  1:7852538‑M2/32‑1 (MQ=255)
                               cccTGCCACAATGGCCCGTTAGCAACGTCGaataa     >  1:11303404‑M2/4‑35 (MQ=255)
                               cccTGCCACAATGGCCCGTTAGCAACGTCGaataa     >  1:5074328‑M2/4‑35 (MQ=255)
                               cccTGCCACAATGGCCCGTTAGCAACGTCGaataa     <  1:9400693‑M2/32‑1 (MQ=255)
                               cccTGCCACAATGGCCCGTTAGCAACGTCGaataa     <  1:10997674‑M2/32‑1 (MQ=255)
                               cccCGCCACAATGGCCCGTTAGCAACGTCGaataa     <  1:9242758‑M2/32‑1 (MQ=255)
                                ccTGCCACAATGGCCCGTTAGCAACGTCGaataat    >  1:20172555‑M2/3‑35 (MQ=255)
                                ccTGCCACAATGGCCCGTTAGCAACGTCGaataat    <  1:3242126‑M2/33‑1 (MQ=255)
                                ccTGCCACAATGGCCCGTTAGCAACGTCGaataat    >  1:627511‑M2/3‑35 (MQ=255)
                                 cTGCCACAATGGCCCGTTAGCAACGTCGAATAAtt   <  1:7529638‑M2/34‑1 (MQ=255)
                                 cTGCCACAATGGCCCGTTAGCAACGTCGAATAAtt   >  1:225289‑M2/2‑35 (MQ=255)
                                 cTGCCACAATGGCCCGTTAGCAACGTCGAATAAtt   >  1:5218254‑M2/2‑35 (MQ=255)
                                 cTGCCACAATGGCCCGTTAGCAACGTCGAATAAtt   >  1:2893837‑M2/2‑35 (MQ=255)
                                  tGCCACAATGGCCCGTTAGCAACGTCGAATAatta  >  1:15973779/1‑35 (MQ=255)
                                  tGCCACAATGGCCCGTTAGCAACGTCGAATAatta  >  1:5772538/1‑35 (MQ=255)
                                  |                                  
GGCGGCTACGCGTAACTTTTTCATTTTTCATCCCTGCCACAATGGCCCGTTAGCAACGTCGAATAATTA  >  REL606/2573083‑2573151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.