New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2487179 =54 (0.530)11 (0.170) 3/30 NT 21.0% coding (435/1404 nt) eutA reactivating factor for ethanolamine ammonia lyase
?REL606 = 3686151 49 (0.760)coding (411/741 nt) yiaT hypothetical protein

Only 100 of 329 total aligned reads displayed.

TCTGCATTTTGTGGAATACCGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTCCGCAGCCG  >  REL606/3686117‑3686185
                                  |                                  
 cTGCATTTTGTGGAATACCGATAGCTCCCCCACCc                                   <  1:7449033‑M2/35‑2 (MQ=255)
  tGCATTTTGTGGAATACCGATAGCTCCCCCACCca                                  <  1:4661692‑M2/35‑3 (MQ=255)
  tGCATTTTGTGGAATACCGATAGCTCCCCCACCca                                  >  1:12050506‑M2/1‑33 (MQ=255)
   gCATTTTGTGGAATACCGATAGCTCCCCCACCcag                                 <  1:19370106‑M2/35‑4 (MQ=255)
   gCATTTTGTGGAATACCGATAGCTCCCCCACCcag                                 >  1:1435498‑M2/1‑32 (MQ=255)
   gCATTTTGTGGAATACCCATAGCTCCCCCACCcag                                 >  1:16654990‑M2/1‑32 (MQ=255)
    cATTTTGTGGAATACCGATAGCTCCCCCACCcagc                                <  1:9119499‑M2/35‑5 (MQ=255)
     aTTTTGTGGAATACCGATAGCTCCCCCACCcagcc                               >  1:5536708‑M2/1‑30 (MQ=255)
     aTTTTGTGGAATACCGATAGCTCCCCCACCcagcc                               <  1:12643955‑M2/35‑6 (MQ=255)
      ttttGTGGAATACCGATAGCTCCCCCCCCcagccg                              >  1:18567096‑M2/1‑29 (MQ=255)
            ggAATACCGATAGCTCCCCCACCCAGCCGTTGCTg                        >  1:8289471/1‑35 (MQ=255)
                 aCCGATAGCTCCCCCACCCAGCCGTTGCTGTTATc                   >  1:4015937/1‑35 (MQ=255)
                  ccGATAGCTCCCCCCCCCAGCCGTTGCTGTTATcc                  <  1:13824536/35‑1 (MQ=255)
                   cGATAGCCCCCCCCCCCAGCCGTTGCTGTTATCCa                 <  1:19965424/35‑1 (MQ=25)
                    gATAGCCCCCCCCCCCAGCCGTTGCTGTTATCCAg                <  1:10510423/35‑1 (MQ=25)
                      tAGCTCCNCCACCCAGCCGTTGCTGTTATCCAGaa              >  1:16801621/1‑35 (MQ=255)
                      tAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGaa              >  1:14222753/1‑35 (MQ=255)
                        gcccccccCCCCAGCCGTTGCTGTTATCCAGAACg            <  1:18023119/32‑1 (MQ=25)
                        gCTCCCCCCCCCAGCCGTTGCTGTTATCCAGAACg            <  1:6835682/35‑1 (MQ=255)
                         cTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGt           <  1:15151739/35‑1 (MQ=255)
                          tCCCCCCCCCAGCCGTTGCTGTTATCCAGAACGTc          <  1:12197388/35‑1 (MQ=255)
                          tCCCCCCCCCAGCCGTTGCTGTTATCCAGAACGTc          <  1:6766716/35‑1 (MQ=255)
                          tCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTc          >  1:8804809/1‑35 (MQ=255)
                          cccccccCCcagccgttgttcagaaagggtttgtg          >  1:20590733‑M2/2‑9 (MQ=255)
                          cccccccCCCAGCCGTTGCctgatgcgacgctgtg          >  1:20188198‑M2/2‑19 (MQ=255)
                          cccccccCCCAGCCGTTGCctgatgcgacgcgtaa          >  1:15441405‑M2/2‑19 (MQ=255)
                           cccccCCCcagccgttgttcagaaagggtttgtgc         >  1:4497900‑M2/1‑8 (MQ=255)
                           cccccCCCcagccgttgcatacgccgtttccatca         >  1:17895188‑M2/1‑8 (MQ=255)
                           cccccCCCCtgccgttgctgccgtgctgtgtgccg         <  1:10378141‑M1/35‑27 (MQ=255)
                           cccccCCCCAGCCGTTGgcgatccggttcggccac         <  1:17360047‑M1/35‑19 (MQ=255)
                           cccccCCCCAGCCGTTGgcgatccggttcggccac         <  1:9323223‑M1/35‑19 (MQ=255)
                           cccccCCCCAGCCGTTGCctgatgcgacgcgtaat         >  1:15859047‑M2/1‑18 (MQ=255)
                           cccccCCCCAGCCGTTGCctgatgcgacgcgtaat         >  1:2536266‑M2/1‑18 (MQ=255)
                           cccccCCCCAGCCGTTGCctgatgcgacgcgtaat         >  1:3837067‑M2/1‑18 (MQ=255)
                            ccccCCCCAGCCGTTGtaggcctgataagacgcgc        <  1:2865566‑M1/35‑20 (MQ=255)
                            ccccCCCCAGCCGTTGtaggcctgataagacgcgc        <  1:6131751‑M1/35‑20 (MQ=255)
                            ccccCCCCAGCCGTTGgcgatccggttcggccacg        <  1:12422903‑M1/35‑20 (MQ=255)
                            ccccCCCCAGCCGTTGgcgatccggttcggccacg        <  1:8331632‑M1/35‑20 (MQ=255)
                            ccccCCCCAGCCGTTGCctgatgcgacgctgtgcg        >  1:2762524‑M2/1‑17 (MQ=255)
                            ccccCCCCAGCCGTTGCctgatgcgacgctgtgcg        >  1:10064183‑M2/1‑17 (MQ=255)
                            ccccCCCCAGCCGTTGCctgatgcgacgctgtgcg        >  1:3429507‑M2/1‑17 (MQ=255)
                            ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg        >  1:18881135‑M2/1‑17 (MQ=255)
                            ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg        >  1:17035659‑M2/1‑17 (MQ=255)
                            ccccACCCAGCCGTTGCTGTTATCCAGAACGTccg        >  1:15045961/1‑35 (MQ=255)
                             cccccccagccgttgttcagaaagggtttgtgccc       >  1:6588584‑M2/1‑6 (MQ=255)
                             cccccccagccgttgttcagaaagggtttgtgccc       >  1:4808518‑M2/1‑6 (MQ=255)
                             cccccccagccgttgcatacgccgtttccatcagg       >  1:10006171‑M2/1‑6 (MQ=255)
                             cccccccagccgttgcatacgccgtttccatcagg       >  1:12125571‑M2/1‑6 (MQ=255)
                             cccccccaGCCGTTGgcgatccggttcggccacgg       <  1:6308722‑M1/35‑21 (MQ=255)
                             cccccccaGCCGTTGCctgatgcgacgctgtgcgt       >  1:14587935‑M2/1‑16 (MQ=255)
                             cccccccaGCCGTTGCctgatgcgacgcgtaatgc       >  1:18798418‑M2/1‑16 (MQ=255)
                             cccccccaGCCGTTGCctgatgcgacgcgtaatgc       >  1:7228551‑M2/1‑16 (MQ=255)
                             cccccccaGCCGTTGCctgatgcgacgcgtaatgc       >  1:14693484‑M2/1‑16 (MQ=255)
                             cccCCCCtgccgttgctgccgtgctgtgtgccgca       <  1:7530558‑M1/35‑29 (MQ=255)
                              cccccctgccgttgctgccgtgctgtgtgccgcaa      <  1:10642301‑M1/32‑30 (MQ=255)
                              cccccctgccgttgctgccgtgctgtgtgccgcaa      <  1:806310‑M1/32‑30 (MQ=255)
                              ccccccagccgttgttcagaaagggtttgtgcccc      >  1:10265387‑M2/1‑5 (MQ=255)
                              ccccccagccgttgcatacgccgtttccatcaggt      >  1:9762873‑M2/1‑5 (MQ=255)
                              ccccccagccgttgcatacgccgtttccatcaggt      >  1:12917685‑M2/1‑5 (MQ=255)
                              ccccccaGCCGTTGCctgatgcgacgcgtaatgcg      >  1:11644750‑M2/1‑15 (MQ=255)
                              ccccccaGCCGTTGCctgatgcgacgcgtaatgcg      >  1:20453023‑M2/1‑15 (MQ=255)
                              ccccccaGCCGTTGCctgatgcgacgcgtaatgcg      >  1:1623568‑M2/1‑15 (MQ=255)
                              ccccccaGCCGTTGCctgatgcgacgcgtaatgcg      >  1:13938402‑M2/1‑15 (MQ=255)
                               ccgccagccGTTGCctgatgcgacgcgtaatgcgt     >  1:16385775‑M2/4‑14 (MQ=255)
                               cccccagccgttgttcagaaagggtttgtgccccg     >  1:2953027‑M2/3‑4 (MQ=255)
                               cccccagccgttgcatacgccgtttccatcaggtt     >  1:4136274‑M2/3‑4 (MQ=255)
                               cccccagccgttgcatacgccgtttccatcaggtt     >  1:13481049‑M2/3‑4 (MQ=255)
                               cccccagcCGTTGgcgatccggttcggccacggaa     <  1:11981154‑M1/33‑23 (MQ=255)
                               cccccagcCGTTGCctgatgcgacgctgtgcgtct     >  1:6032294‑M2/3‑14 (MQ=255)
                               cccccagcCGTTGCctgatgcgacgctgtgcgtct     >  1:5958548‑M2/3‑14 (MQ=255)
                               cccccagcCGTTGCctgatgcgacgctgtgcgtct     >  1:5728360‑M2/3‑14 (MQ=255)
                               cccccagcCGTTGCctgatgcgacgcgtaatgcgt     >  1:11006735‑M2/3‑14 (MQ=255)
                               cccccagcCGTTGCctgatgcgacgcgtaatgcgt     >  1:9711751‑M2/3‑14 (MQ=255)
                               cccccagcCGTTGCctgatgcgacgcgtaatgcgt     >  1:696539‑M2/3‑14 (MQ=255)
                               cccccagcCGTTGCctgatgcgacgcgtaatgcgt     >  1:13294247‑M2/3‑14 (MQ=255)
                               cacccaGCCGTTGCTGTTATCCAGAACGGccgccg     >  1:18277765/1‑33 (MQ=25)
                                ccccggccgttgctgccgtgctgtgtgccgcaatg    <  1:19018751‑M1/34‑32 (MQ=255)
                                ccccagccgttgttcagaaagggtttgtgccccgg    >  1:1819782‑M2/2‑3 (MQ=255)
                                ccccagccgttgcatacgccgtttccatcaggtta    >  1:7130877‑M2/2‑3 (MQ=255)
                                ccccagCCGTTGgcgatccggttcggccacggaat    <  1:1490911‑M1/34‑24 (MQ=255)
                                ccccagCCGTTGgcgatccggttcggccacggaat    <  1:15350068‑M1/34‑24 (MQ=255)
                                ccccagCCGTTGgagatccggttcggccacggaat    <  1:20506821‑M1/34‑24 (MQ=255)
                                ccccagCCGTTGCctgatgcgacgcgtaatgcgtc    >  1:16024353‑M2/2‑13 (MQ=255)
                                ccccagCCGTTGCctgatgcgacgcgtaatgcgtc    >  1:11479432‑M2/2‑13 (MQ=255)
                                ccccagCCGTTGCctgatgagacgcgtaatgcgtc    >  1:5323601‑M2/2‑13 (MQ=255)
                                acccaGCCGTTGCTGTTATCCAGAACGTccgcagc    >  1:3317671/1‑35 (MQ=255)
                                 gccagCCGTTGCctgatgcgacgctgtgcgtctta   >  1:14781982‑M2/2‑12 (MQ=255)
                                 gccagCCGTGGCctgatgcgacgctgtgcgtctta   >  1:7605133‑M2/2‑12 (MQ=255)
                                 cccagccgttgttcagaaagggtttgtgccccggc   >  1:317262‑M2/1‑2 (MQ=255)
                                 cccaGCCGTTGtaggcctgataagacgcgcaagcg   <  1:9533212‑M1/35‑25 (MQ=255)
                                 cccaGCCGTTGgcgatccggttcggccacggaata   <  1:17592434‑M1/35‑25 (MQ=255)
                                 cccaGCCGTTGCctgatgcgacgcgtaatgcgtct   >  1:17827781‑M2/1‑12 (MQ=255)
                                 cccaGCCGTTGCctgatgcgacgcgtaatgcgtct   >  1:4901450‑M2/1‑12 (MQ=255)
                                 cccaGCCGTTGCctgatgcgacgcgtaatgcgtct   >  1:15600769‑M2/1‑12 (MQ=255)
                                 cccaGCCGTTGCctgatgcgacgcgtaatgcgtct   >  1:2648281‑M2/1‑12 (MQ=255)
                                  ccaGCCGTTGtaggcctgataagacgcgcaagcgt  <  1:783597‑M1/35‑26 (MQ=255)
                                  ccaGCCGTTGgcgatccggttcggccacggaataa  <  1:7333455‑M1/35‑26 (MQ=255)
                                  ccaGCCGTTGgcgatccggttcggccacggaataa  <  1:2210182‑M1/35‑26 (MQ=255)
                                  ccaGCCGTTGgcgatccggttcggccacggaataa  <  1:19083427‑M1/35‑26 (MQ=255)
                                  ccaGCCGTTGCctgatgcgacgctgtgcgtcttat  >  1:2405370‑M2/1‑11 (MQ=255)
                                  |                                  
TCTGCATTTTGTGGAATACCGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTCCGCAGCCG  >  REL606/3686117‑3686185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.