New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1050924 =43 (0.420)6 (0.070) 4/40 NT 9.8% coding (580/1794 nt) hyaB hydrogenase 1, large subunit
?REL606 1543472 = 75 (0.880)coding (969/1536 nt) xasA predicted glutamate:gamma‑aminobutyric acid antiporter

Only 100 of 159 total aligned reads displayed.

TTTTGTTCATTTTAGCGAATGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGACATACATCCCGCGAGAAG  >  REL606/1543438‑1543506
                                  |                                  
ttttGTTCATTTTAGCGAATGCCGCTGGCAGCAgg                                    <  1:6197675/35‑1 (MQ=255)
ttttGTTCATTTTAGCGAATGCCGCTGGCAGCAgg                                    <  1:3263043/35‑1 (MQ=255)
gggcaaagcccatcaggttagcttctggcgggagg                                    >  1:8813202‑M2/35‑35 (MQ=255)
 tttGTTCATTTTAGCGAATGCCGCTGGCAGCAggg                                   >  1:10287995/1‑34 (MQ=255)
 tttGTTCATTTTAGCGAATGCCGCTGGCAGCAggg                                   >  1:8375816/1‑34 (MQ=255)
 tttGTTCATTTTAGCGAATGCCGCTGGCAGCAggg                                   >  1:3862515/1‑34 (MQ=255)
 tttGTTCATTTTAGCGAATGCCGCTGGCAGCAGGt                                   <  1:18434750/35‑1 (MQ=255)
 tttGTTCATTTTAGCGAATGCCGCTGGCAGCAGGt                                   <  1:11185471/35‑1 (MQ=255)
 gtcaaagcccatcaggttagcttctggcggcagGt                                   >  1:18608517‑M2/34‑35 (MQ=255)
  ttGTTCATTTTAGCGAATGCCGCTGGCAGCATGtt                                  >  1:7951809/1‑35 (MQ=255)
  ttGTTCATTTTAGCGAATGCCGCTGGCAGCAGGtt                                  <  1:8834623/35‑1 (MQ=255)
   tGTTCATTTTAGCGAATGCCGCTGGCAGCAGGttt                                 <  1:20535311/35‑1 (MQ=255)
   tGTTCATTTTAGCGAATGCCGCTGGCAGCAGGttt                                 <  1:11293072/35‑1 (MQ=255)
   tGTTCATTTTAGCGAATGCCGCTGGCAGCAGGgtt                                 >  1:7896359/1‑35 (MQ=255)
   caaagcccatcaggttagcttctggcggcagGttt                                 >  1:4022043‑M2/32‑35 (MQ=255)
    gTTCATTTTAGCGAATGCCGCTGGCAGCAGGgttt                                >  1:6248471/1‑35 (MQ=255)
    gTTCATTTTAGCGAATGCCGCTGGCAGCAGGgttt                                >  1:2260347/1‑35 (MQ=255)
    gTTCATTTTAGCGAATGCCGCTGGCAGCAGGgttt                                >  1:14748176/1‑35 (MQ=255)
    aaagcccatcaggttagcttctggcggcaggttgt                                >  1:8452009‑M2/31‑33 (MQ=255)
    aaagcccatcaggttagcttctggcggcagGtttt                                >  1:14019352‑M2/31‑35 (MQ=255)
     ttCATTTTAGCGAATGCCGCTGGCAGCAGGgtttt                               >  1:9365296/1‑35 (MQ=255)
      tCATTTTAGCGAATGCCGCTGGCAGCAGGTTTTTc                              <  1:4604258/35‑1 (MQ=255)
      ctaTTTTAGCGAATGCCGCTGGCAGCAGGTTTTTc                              <  1:3178436/33‑1 (MQ=255)
      agcccatcaggttagcttctggcggcaggttttta                              >  1:12317471‑M2/29‑34 (MQ=255)
       cATTTTAGCGAATGCCGCTGGCAGGAGGgtttttt                             >  1:14227965/1‑33 (MQ=25)
       cATTTTAGCGAATGCCGCTGGCAGCAGGTTTTTCt                             <  1:11144240/35‑1 (MQ=255)
       cATTTTAGCGAATGCCGCTGGCAGCAGGTTTTTCt                             <  1:192986/35‑1 (MQ=255)
       cATTTTAGCGAATGCCGCTGGCAGCAGGGTTTTCt                             >  1:18302957/1‑35 (MQ=255)
        cccatcaggttagcttctggcggccgGTTTTTctt                            >  1:3673906‑M2/27‑34 (MQ=255)
        aTTTTAGCGAATGCCGCTGGCAGCAGGTTTTTCTg                            <  1:15334357/35‑1 (MQ=255)
        aTTTTAGCGAATGCCGCTGGCAGCAGGTTTTTCTg                            <  1:13366600/35‑1 (MQ=255)
         ccatcaggttagcttctggcggcagGTTTTTATgc                           >  1:8598559‑M2/26‑35 (MQ=255)
          tttAGCGAATGCCGCTGGCAGCAGGGTTTTCTgcg                          >  1:3746128/1‑35 (MQ=255)
           ttAGCGAATGCCGCTGGCAGCAGGTTTTTCTgcgc                         <  1:5458774/35‑1 (MQ=255)
           ttAGCGAATGCCGCTGGCAGCAGGTTTTTCTgcgc                         <  1:5878322/35‑1 (MQ=255)
           ttAGCGAATGCCGATGGCAGCAGGTTTTTCTgcgc                         <  1:12252912/35‑1 (MQ=255)
            tAGCGAATGCCGCTGGCAGCAGGTTTTTCTGCGCt                        <  1:417582/35‑1 (MQ=255)
            tAGCGAATGCCGCTGGCAGCAGGTTTTTCTGCGCt                        <  1:238926/35‑1 (MQ=255)
             aGCGAATGCCGCTGGTAGCAGGTTTTTCTGCGCtg                       >  1:10684439/1‑35 (MQ=255)
              gCGAATGCCGCTGGCAGCAGGTTTTTCTGCGCtgt                      <  1:13690419/35‑1 (MQ=255)
              gCGAATGCCGCTGGCAGCAGGTTTTTCTGCGCtgt                      <  1:6775777/35‑1 (MQ=255)
              gCGAATGCCGCTGGCAGCAGGGTTTTCTGCGGtgt                      >  1:18419071/1‑35 (MQ=37)
               cGAATGCCGCTGGCAGCAGGTTTTTCTGCGCtgtg                     <  1:1695808/35‑1 (MQ=255)
                gAATGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGa                    >  1:3326913/1‑35 (MQ=255)
                gAATGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGa                    >  1:19350889/1‑35 (MQ=255)
                gAATGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGa                    <  1:17524933/35‑1 (MQ=255)
                 aaTGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGac                   <  1:16187041/35‑1 (MQ=255)
                 aaTGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGac                   <  1:1145704/35‑1 (MQ=255)
                 aaTGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGac                   <  1:4682702/35‑1 (MQ=255)
                  aTGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGcca                  >  1:19215347/1‑35 (MQ=255)
                  aTGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGaca                  >  1:8545011/1‑35 (MQ=255)
                  aTGCCGCTGGCAGCAGGGTTTTCTGCGCTGTGaca                  >  1:20082492/1‑35 (MQ=255)
                   tGCCGCTGGCAGGAGGTTTTTCTGCGCTGTGacat                 >  1:14145076/1‑35 (MQ=255)
                   tGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGacat                 <  1:6945513/35‑1 (MQ=255)
                   tGCCGCTGGCAGCAGGGTTTTCTGCGCTGTGacat                 >  1:5695167/1‑35 (MQ=255)
                    gCCGCTGGCAGCAGGTTTTTCTGCGCTGTGacata                <  1:1634120/35‑1 (MQ=255)
                     ccGCTGGCAGCAGGTTTTTCTGCGCTGTGacatac               >  1:11755602/1‑35 (MQ=255)
                     ccGCTGGCAGCAGGTTTTTCTGCGCTGTGacatac               <  1:17541510/35‑1 (MQ=255)
                     ccGCTGGCAGCAGGTTTTTCTGCGCTGTGacatac               <  1:18546559/35‑1 (MQ=255)
                      cGCTGGCAGCAGGTTTTTCTGCGCTGTGacataca              <  1:8710224/35‑1 (MQ=255)
                      cGCTGGCAGCAGGTTTTTCTGCGCTGTGacataca              <  1:16696921/35‑1 (MQ=255)
                      cGCTGGCAGCAGGTTTTTCTGCGCTGTGacataca              <  1:5725838/35‑1 (MQ=255)
                      cGCTGGCAGCAGGTTTTTCTGCGCTGTGacataca              >  1:6562684/1‑35 (MQ=255)
                      cGCTGGCAGCAGGTTTTTCTGCGCTGTGacataca              >  1:4612460/1‑35 (MQ=255)
                      cGCTGGCAGCAGGTTTTTCTGCGCTGTGacataca              >  1:4944836/1‑35 (MQ=255)
                       gCTGGCAGCAGGTTTTTCTGCGCTGTGacatacat             <  1:19016472/35‑1 (MQ=255)
                       gCTGGCAGCAGGGTTTTCTGCGCTGTGacatacat             >  1:3864917/1‑35 (MQ=255)
                       gCTGGCAGCAGGGTTTTCTGCGCTGTGacatacat             >  1:3916049/1‑35 (MQ=255)
                        cTGGCAGCAGGTTTTTCTGCGCTGTGACATACATc            >  1:7236210/1‑35 (MQ=255)
                        cTGGCAGCAGGTTTTTCTGCGCTGTGACATACATc            <  1:9376238/35‑1 (MQ=255)
                        cTGGCAGCAGGTTTTTCTGCGCTGTGACATACATc            >  1:14009677/1‑35 (MQ=255)
                        cTGGCAGCAGGTTTTTCTGCGCTGTGACATACATc            >  1:20289576/1‑35 (MQ=255)
                         tGGCAGCAGGTTTTTCTGCGCTGTGACATACATcc           <  1:9301085/35‑1 (MQ=255)
                         tGGCAGCAGGTTTTTCTGCGCTGTGACATACATcc           <  1:11868785/35‑1 (MQ=255)
                         tGGCAGCAGGTTTTTCTGCGCTGTGACATACATcc           >  1:14725715/1‑35 (MQ=255)
                         tGGCAGCAGGTTTTTCTGCGCTGTGACATACATcc           <  1:7660340/35‑1 (MQ=255)
                          ggCAGCAGGTTTTTCTGCGCTGTGACATACATccc          >  1:11037711/1‑35 (MQ=255)
                          ggCAGCAGGTTTTTCTGCGCTGTGACATACATccc          >  1:753280/1‑35 (MQ=255)
                           gcagcaGGTTTTTCTGCGCTGTGGCATACATCCcg         <  1:12444750/35‑1 (MQ=255)
                           gcagcaGGTTTTTCTGCGCTGTGACATACATCCcg         <  1:10094435/35‑1 (MQ=255)
                           gcagcaGGTTTTTCTGCGCTGTGACATACATCCcg         >  1:1971480/1‑35 (MQ=255)
                           gcagcaGGTTTTTCTGCGCTGTGACATACATCCcg         <  1:517421/35‑1 (MQ=255)
                            cagcagGTTTTTCTGCGCTGTGACATACATCCcgc        >  1:19888593/1‑35 (MQ=255)
                            cagcagGTTTTTCTGCGCTGTGACATACATCCcgc        <  1:3071565/35‑1 (MQ=255)
                            cagcagGTTTTTCTGCGCTGTGACATACATCCcgc        >  1:3419913/1‑35 (MQ=255)
                            cagcagGTTTTTCTGCGCTGTGACATACATCCcgc        >  1:1190826/1‑35 (MQ=255)
                            cagcagGTTTTTCTGCGCTGTGACATACATCCcgc        >  1:13872909/1‑35 (MQ=255)
                             agcagGTTTTTCTGCGCTGTGACATACATCCcgcg       >  1:19735267/1‑35 (MQ=255)
                             agcagGTTTTTCTGCGCTGTGACATACATCCcgcg       <  1:4945817/35‑1 (MQ=255)
                              gcagGTTTTTCTGCGCTGTGACATACATCCCGCga      <  1:50841‑M2/31‑1 (MQ=255)
                               cagGTTTTTCTGCGCTGTGACATACATCCCGCgag     <  1:20433569‑M2/32‑1 (MQ=255)
                               cagGTTTTTCTGCGCTGTGACATACATCCCGCgag     >  1:4176488‑M2/4‑35 (MQ=255)
                                agGTTTTTCTGCGCTGTGACATACGTCCCGCgaga    <  1:1893952‑M2/33‑1 (MQ=255)
                                agGTTTTTCTGCGCTGTGACATACATCCCGCgaga    >  1:4967064‑M2/3‑35 (MQ=255)
                                agGTTTTTCTGCGCTGTGACATACATCCCGCgaga    <  1:3931588‑M2/33‑1 (MQ=255)
                                agGTTTTTCTGCGCTGTGACATACATCCCGCgaga    >  1:16178126‑M2/3‑35 (MQ=255)
                                agGTTTTTCTGCGCTGTGACATACATCCCGCgaga    >  1:6570085‑M2/3‑35 (MQ=255)
                                 ggTTTTTCTGCGCTGTGACATACATCCGCGAGAAg  >  1:544236/1‑35 (MQ=37)
                                  gTTTTTCTGCGCTGTGACATACATCCCGCGAGAAg  <  1:7877784/35‑1 (MQ=255)
                                  gTTTTTCTGCGCTGTGACATACATCCCGCGAGAAg  <  1:2236068/35‑1 (MQ=255)
                                  |                                  
TTTTGTTCATTTTAGCGAATGCCGCTGGCAGCAGGTTTTTCTGCGCTGTGACATACATCCCGCGAGAAG  >  REL606/1543438‑1543506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.