New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1924695 = | 91 (0.890) | 6 (0.100) | 3/28 | NT | 9.9% | coding (52/612 nt) | ruvA | Holliday junction DNA helicase motor protein |
? | REL606 | = 2696376 | 56 (0.930) | coding (277/2145 nt) | nrdE | ribonucleotide‑diphosphate reductase alpha subunit |
Only 100 of 160 total aligned reads displayed.
TCGCGACTTTGTCATTACGCTGTTTGCCCACGCACACACCAGC‑GGTTTTCGTTTCCAGACATTCCTCGG > REL606/2696342‑2696410 | tcGCGACTTTGTCATTACGCTGTTTGCCCACGcac < 1:12406653/35‑1 (MQ=255) tcGCGACTTTGTCATTACGCTGTTTGCCCACGcac > 1:20349432/1‑35 (MQ=255) cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa > 1:13832680‑M2/1‑34 (MQ=255) cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa > 1:15174883‑M2/1‑34 (MQ=255) cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa < 1:5699525‑M2/35‑2 (MQ=255) cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa < 1:16854158‑M2/35‑2 (MQ=255) cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa > 1:8077655‑M2/1‑34 (MQ=255) cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa > 1:18924560‑M2/1‑34 (MQ=255) cgcgACTTTGTCATTACGCTGTTTGCCCACGCACa < 1:2446258‑M2/35‑2 (MQ=255) gcgACTTTGTCATTACGCTGTTTGCCCACGCACac > 1:18603019‑M2/1‑33 (MQ=255) cgACTTTGTCATTACGCTGTTTGCCCACGCACaca < 1:3249631‑M2/35‑4 (MQ=255) cgACTTTGTCATTACGCTGTTTGCCCACGCACaca < 1:7427905‑M2/35‑4 (MQ=255) gACTTTGTCATTACGCTGTTTGCCCACGCACacac < 1:11109301‑M2/35‑5 (MQ=255) gACTTTGTCATTACGCTGTTTGCCCACGCACacac > 1:14920818‑M2/1‑31 (MQ=255) gACTTTGTCATTACGCTGTCTGCCCACGCACacac < 1:4370727‑M2/35‑5 (MQ=255) tctTTGTCATTACGCTGTTTGCCCACGCACacacc > 1:9007572‑M2/2‑30 (MQ=255) aCTTTGTCATTACGCTGTTTGCCCACGCACacacc < 1:12117025‑M2/35‑6 (MQ=255) aCTTTGTCATTACGCTGTTTGCCCACGCACacacc < 1:14932280‑M2/35‑6 (MQ=255) aCTTTGTCATTACGCTGTTTGCCCACGCACacacc > 1:1338870‑M2/1‑30 (MQ=255) cTTTGTCATTACGCTGTTTGCCCCCGCACacacca < 1:13551364‑M2/35‑7 (MQ=255) cTTTGTCATTACGCTGTTTGCCCACGCACacacca > 1:3360865‑M2/1‑29 (MQ=255) cTTTGTCATTACGCTGTTTGCCCACGCACacacca < 1:16131602‑M2/35‑7 (MQ=255) cTTTGTCATTACGCTGTTTGCCCACGCACacacca > 1:274186‑M2/1‑29 (MQ=255) cTTTGTCATTACGCTGTTTGCCCACGCACacacca < 1:10130338‑M2/35‑7 (MQ=255) cTTTGTCATTACGCTGTTTGCCCACGCACacacca > 1:10638718‑M2/1‑29 (MQ=255) cTTTGTCATTACGCTGTTTGCCCACGCACacacca > 1:7980505‑M2/1‑29 (MQ=255) tttGTCATTACGCTGTTTGCCCACGCACacaccag > 1:17815271‑M2/1‑28 (MQ=255) tttGTCATTACGCTGTTTGCCCACGCACacaccag > 1:12233020‑M2/1‑28 (MQ=255) tttGTCATTACGCTGTTTGCCCACGCACacaccag > 1:6379777‑M2/1‑28 (MQ=255) ttGTCATTACGCTGTTTGCCCACGCACacaccagc > 1:1504966‑M2/1‑27 (MQ=255) ttGTCATTACGCTGTTTGCCCACGCACacaccagc < 1:11362318‑M2/35‑9 (MQ=255) ttGTCATTACGCTGTTTGCCCACGCACacaccagc < 1:11706261‑M2/35‑9 (MQ=255) ttGTCATTACGCTGTTTGCCCACGCACacaccagc > 1:17616631‑M2/1‑27 (MQ=255) ttGTCATTACGCTGTTTGCCCACGCACacaccagc > 1:16942207‑M2/1‑27 (MQ=255) ttGTCATTACGCTGTTTGCCCACGCACacaccagc > 1:6643591‑M2/1‑27 (MQ=255) tGTCATTACGCTGTTTGCCCACGCACacaccagcg > 1:8623612‑M2/1‑26 (MQ=255) tGTCATTACGCTGTTTGCCCACGCACacaccagcg < 1:12306852‑M2/35‑10 (MQ=255) tGTCATTACGCTGTTTGCCCACGCACacaccagcg > 1:13098984‑M2/1‑26 (MQ=255) tGTCATTACGCTGTTTGCCCACGCACacaccagcg > 1:5874711‑M2/1‑26 (MQ=255) tGTCATTACGCTGTTTGCCCACGCACacaccagcg > 1:2652928‑M2/1‑26 (MQ=255) tCATTACGCTGTTTGCCCACGCACacaccagcggg < 1:16769424‑M2/35‑12 (MQ=255) tCATTACGCTGTTTGCCCACGCACacaccagcggg < 1:33062‑M2/35‑12 (MQ=255) tCATTACGCTGTTTGCCCACGCACacaccagcggg < 1:4268382‑M2/35‑12 (MQ=255) tCATTACGCTGTTTGCCCACGCACacaccagcggg < 1:18977593‑M2/35‑12 (MQ=255) tCATTACGCTGTTTGCCCACGCACACACCAGC‑GGt < 1:15386549/35‑1 (MQ=255) aTTACGCTGTTTGCCCACGCACACACCAGC‑GGttt < 1:8529111/35‑1 (MQ=255) ttACGCTGTTTGCCCACGCACACACCAGC‑GGtttt < 1:18959364/35‑1 (MQ=255) ttACGCTGTTTGCCCACGCACACACCAGC‑GGtttt < 1:15926065/35‑1 (MQ=255) tACGCTGTTTGCCCACGCACacaccagcggggttt < 1:17264953‑M2/35‑16 (MQ=255) tACGCTGTTTGCCCACGCACACACCAGC‑GGgtttt > 1:19668804/1‑34 (MQ=255) tACGCTGTTTGCCCACGCACACACCAGC‑GGgtttt > 1:7708899/1‑34 (MQ=255) tACGCTGTTTGCCCACGCACACACCAGC‑GGgtttg > 1:5395935/1‑34 (MQ=255) tACGCTGTTTGCCCACGCACACACCAGC‑GGTTTTc < 1:14465871/35‑1 (MQ=255) tACGCTGTTTGCCCACGCACACACCAGC‑GGTTTTc < 1:14562996/35‑1 (MQ=255) aCGCTGTTTGCCCACGCACacaccagcggggtttg < 1:13173028‑M2/35‑17 (MQ=255) aCGCTGTTTGCCCACGCACACACCAGC‑GGTTTTCg < 1:20365860/35‑1 (MQ=255) aCGCTGTTTGCCCACGCACACACCAGC‑GGTTTTCg < 1:11498698/35‑1 (MQ=255) cGCTGTTTGCCCACGCACacaccagcggggtttgt < 1:4820744‑M2/35‑18 (MQ=255) cGCTGTTTGCCCACGCACacaccagcggggtttgg < 1:18040694‑M2/35‑18 (MQ=255) cGCTGTTTGCCCACGCACACACCAGC‑GGTTTTCGt < 1:18452278/35‑1 (MQ=255) gCTGTTTGCCCACGCACacaccagcggggtttgtt < 1:18042462‑M2/35‑19 (MQ=255) gCTGTTTGCCCACGCACACACCAGC‑GGTTTTCGtt < 1:3740241/35‑1 (MQ=255) gCTGTTTGCCCACGCACACACCAGC‑GGTTTTCGtt < 1:2067438/35‑1 (MQ=255) gCTGTTTGCCCACGCACACACCAGC‑GGTTTTCGtt < 1:5879167/35‑1 (MQ=255) gCTGTTTGCCCACGCACACACCAGC‑GGTTTTCGtt < 1:13592580/35‑1 (MQ=255) gCTGTTTGCCCACGCACACACCAGC‑GGGGTTCGtt > 1:9558352/1‑35 (MQ=37) cTGTTTGCCCACGCACACACCAGC‑GGTTTTCGttt < 1:13344912/35‑1 (MQ=255) cTGTTTGCCCACGCACACACCAGC‑GGGTTTTGttt > 1:9190019/1‑35 (MQ=37) tGTTTGCCCACGCACACACCAGC‑GGTTTTCGTTTc < 1:15431580/35‑1 (MQ=255) gTTTGCCCACGCACACACCAGC‑GGTTTTCGTTTcc < 1:2803771/35‑1 (MQ=255) gTTTGCCCACGCACACACCAGC‑GGTTTTCGTTTcc < 1:2920247/35‑1 (MQ=255) gTTTGCCCACGCACACACCAGC‑GGGTTTTGttttc > 1:16449042/1‑33 (MQ=25) tttGCCCACGCACACACCAGCGGGGTTTCGttcgc > 1:1915613/1‑32 (MQ=19) tttGCCCACGCACACACCAGC‑GGTTTTCGTTTCCa < 1:10899845/35‑1 (MQ=255) tttGCCCACGCACACACCAGC‑GGTTTTCGTTTCCa < 1:6016796/35‑1 (MQ=255) tttGCCCACGCACACACCAGC‑GGGTTTTGTTTCCa > 1:6405890/1‑35 (MQ=37) ttGCCCACGCACACACCAGC‑GGGTTTTGTTTCCat > 1:15736154/1‑34 (MQ=37) ttGCCCACGCACACACCAGC‑GGGGTTTGTTTTCAg > 1:6524996/1‑35 (MQ=12) tGCCCACGCACACACCAGC‑GGTTTTCGTTTCCAGa < 1:7258555/35‑1 (MQ=255) tGCCCACGCACACACCAGC‑GGTTTTCGTTTCCAGa < 1:17378373/35‑1 (MQ=255) gCCCACGCACACACCAGC‑GGTTTTCGTCTCCAGAc < 1:18663192/35‑1 (MQ=255) cccACGCACACACCAGC‑GGTTTTCGTTTCCAGACa < 1:10198062/35‑1 (MQ=255) cccACGCACACACCAGC‑GGTTTTCGTTTCCAGACa < 1:221700/35‑1 (MQ=255) ccACGCACACACCAGC‑GGTTTTCGTTTCCAGACAt < 1:13049421/35‑1 (MQ=255) ccACGCACACACCAGC‑GGTTTTCGTTTCCAGACAt < 1:1878841/35‑1 (MQ=255) cACGCACACACCAGC‑GGTTTTCGTTTCCAGACAtt < 1:7386248/35‑1 (MQ=255) cACGCACACACCAGC‑GGTTTTCGTTTCCAGACAtt < 1:20420195/35‑1 (MQ=255) aCGCACACACCAGC‑GGTTTTCGTTTCCAGACATTc < 1:19390073/35‑1 (MQ=255) aCGCACACACCAGC‑GGGTTTTGTTTTCAGACATTc > 1:19332112/1‑35 (MQ=25) gCACACACCAGC‑GGTTTTCGTTTCCAGACATTCCt < 1:14615301/35‑1 (MQ=255) gCACACACCAGC‑GGTTTTCGTTTCCAGACATTCCt < 1:19238947/35‑1 (MQ=255) gCACACACCAGC‑GGTTTTCGTTTCCAGACATTCCt < 1:12115634/35‑1 (MQ=255) gCACACACCAGC‑GGTTTTCGTTTCAAGACATTCCt < 1:3786676/35‑1 (MQ=255) cacacaCCAGC‑GGTTTTCGTTTCCAGACATTCCTc < 1:1392182/35‑1 (MQ=255) cacacaCCAGC‑GCTTTTCGTTTCCAGACATTCCTc > 1:19115657/1‑35 (MQ=255) acacacCAGC‑GGTTTTCGTTTCCAGACATTCCTCg < 1:15339348/35‑1 (MQ=255) acacacCAGC‑GGTTTTCGTTTCCAGACATTCCTCg < 1:4103967/35‑1 (MQ=255) cacacCAGC‑GGTTTTCGTTTCCAGACATTCCTCgg < 1:4111565/35‑1 (MQ=255) cacacCAGC‑GGTTTTCGTTTCCAGACATTCCTCgg < 1:11837621/35‑1 (MQ=255) cacacCAGC‑GGTTTTCGTTTCCAGACATTCCTCgg < 1:10472382/35‑1 (MQ=255) | TCGCGACTTTGTCATTACGCTGTTTGCCCACGCACACACCAGC‑GGTTTTCGTTTCCAGACATTCCTCGG > REL606/2696342‑2696410 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |