New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3016826 =44 (0.430)12 (0.160) 5/36 NT 14.8% coding (561/741 nt) ECB_02817 KpsU protein
?REL606 3882315 = 105 (1.360)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

Only 100 of 114 total aligned reads displayed.

TTTACGCTTATCGTCGCGATGTGCTGCAAAACTACAGCCAGTTACCGGAGTCCATGCAGGAGCAGGCAG  >  REL606/3016792‑3016860
                                  |                                  
tttACGCTTATCGTCGCGATGTGCTGCAAAACTAc                                    >  1:11017970/1‑35 (MQ=255)
tttACGCTTATCGTCGCGATGTGCTGCAAAACTAc                                    >  1:8231962/1‑35 (MQ=255)
tttACGCTTATCGTCGCGATGTGCTGCAAAACTAc                                    >  1:6574268/1‑35 (MQ=255)
tttACGCTTATCGTCGCGATGTGCTGCAAAACTAc                                    >  1:7480057/1‑35 (MQ=255)
 ttACGCTTATCGTCGCGATGTGCTGCAAAACTACa                                   <  1:2562334/35‑1 (MQ=255)
  tacattctcgctggtggatccacaaaaccccccag                                  >  1:18029413‑M1/33‑35 (MQ=255)
  tacattctcgctggtggatccacaaaaccccccag                                  <  1:9085420‑M1/3‑1 (MQ=255)
  tacattctcgctggtggatccacaaaaccccccag                                  <  1:10925614‑M1/3‑1 (MQ=255)
  tacattctcgctggtggatccacaaaaccccccag                                  <  1:12883888‑M1/3‑1 (MQ=255)
  tacattctcgctggtggatccacaaaaccccccag                                  >  1:12829738‑M1/33‑35 (MQ=255)
  tacattctcgctgatggatccacaaaaccccccag                                  >  1:13145248‑M1/33‑35 (MQ=255)
  tacattctcgcgggtggatccacaaaaccccccag                                  >  1:18909907‑M1/33‑35 (MQ=255)
  tACGCTTATCGTCGCGATGTGCTGCAAAACTACAg                                  >  1:6179895/1‑35 (MQ=255)
  tACGCTTATCGTCGCGATGTGCTGCAAAACTACAg                                  >  1:5676222/1‑35 (MQ=255)
  tACGCTTATCGTCGCGATGTGCTGCAAAACTACAg                                  >  1:4924119/1‑35 (MQ=255)
  tACGCTTATCGTCGCGATGTGCTGCAAAACTACAg                                  >  1:20223512/1‑35 (MQ=255)
   acattctcgctggtggatccacaaaaccccccagc                                 <  1:11632022‑M1/4‑1 (MQ=255)
   acattctcgctggtggatccacaaaaccccccagc                                 >  1:12798440‑M1/32‑35 (MQ=255)
   acattctcgctggtggatccacaaaaccccccagc                                 >  1:8530939‑M1/32‑35 (MQ=255)
   aCGCTTATCGTCGCGATGTGCTGCAAAACTACAGc                                 <  1:2112447/35‑1 (MQ=255)
   aCGCTTATCGTCGCGATGTGCTGCAAAACTACAGc                                 <  1:19306273/35‑1 (MQ=255)
   aCGCTTATCGTCGCGATGTGCTGCAAAACTACAGc                                 <  1:8540191/35‑1 (MQ=255)
    cattctcgctggtggatccacaaaaccccccagcc                                <  1:17195532‑M1/5‑1 (MQ=255)
    cattctcgctggtggatccacaaaaccccccagcc                                <  1:12896502‑M1/5‑1 (MQ=255)
    cattctcgctggtggatccacaaaaccccccagcc                                <  1:7434918‑M1/5‑1 (MQ=255)
    cGCTTATCGTCGCGATGTGCTGCAAAACTACAGcc                                >  1:14992577/1‑35 (MQ=255)
    cGCTTATCGTCGCGATGTGCTGCAAAACTACAGcc                                >  1:1523416/1‑35 (MQ=255)
    cGCTTATCGTCGCGATGTGCTGCAAAACTACAGcc                                >  1:6736766/1‑35 (MQ=255)
    cGCTTATCGTCGCGATGTGCTGCAAAACTACAGcc                                >  1:18298077/1‑35 (MQ=255)
    cGCTTATCGTCGCGATGTGCTGCAAAACTACAGcc                                >  1:4212112/1‑35 (MQ=255)
     gCTTATCGTCGCGATGTGCTGCAAAACTACAGCCa                               >  1:6697598/1‑35 (MQ=255)
     attctcgctggttgatccacaaaaccccccagcca                               <  1:6431257‑M1/6‑1 (MQ=255)
     attctcgctggtggatccacaaaaccccccagcca                               <  1:11692488‑M1/6‑1 (MQ=255)
     attctcgctggtggatccacaaaaccccccagcca                               >  1:1982484‑M1/30‑35 (MQ=255)
      cTTATCGTCGCGATGTGCTGCAAAACTACAGCCAg                              >  1:11312953/1‑35 (MQ=255)
       ttATCGTCGCGATGTGCTGCAAAACTACAGCCAGt                             >  1:19847061/1‑35 (MQ=255)
       ttATCGTCGCGATGTGCTGCAAAACTACAGCCAGt                             >  1:6482240/1‑35 (MQ=255)
        tATCGTCGCGATGTGCTGCAAAACTACAGCCAGtt                            >  1:79200/1‑35 (MQ=255)
        tATCGTCGCGATGTGCTGCAAAACTAAAGCCAgat                            >  1:9096447/1‑33 (MQ=37)
         aTCGTCGCGATGTGCTGCAAAACTACAGCCAGTTa                           >  1:178624/1‑35 (MQ=255)
          tcgtcgCGATGTGCTGCAAAACTACAGCCAGTTAc                          >  1:19463061/1‑35 (MQ=255)
           cgtcgCGATGTGCTGCAAAACTACAGCCAGTTAcc                         >  1:4096555/1‑35 (MQ=255)
           cgtcgCGATGTGCTGCAAAACTACAGCCAGTTAcc                         >  1:5654750/1‑35 (MQ=255)
            gtcgCGATGTGCTGCAAAACTACAGCCAGTTACCg                        >  1:5178657/1‑35 (MQ=255)
            gtcgCGATGTGCTGCAAAACTACAGCCAGTTACCg                        >  1:17451975/1‑35 (MQ=255)
            gtcgCGATGTGCTGCAAAACTACAGCCAGTTACCg                        >  1:3510383/1‑35 (MQ=255)
               gcgATGTGCTGCAAAACTACAGCCAGTTACCGGAg                     >  1:18697824/1‑35 (MQ=255)
                cgATGTGCTGCAAAACTACAGCCAGTTACCGGAGt                    >  1:15280512/1‑35 (MQ=255)
                cgATGTGCTGCAAAACTACAGCCAGTTACCGGAGt                    >  1:14879467/1‑35 (MQ=255)
                cgATGTGCTGCAAAACTACAGCCAGTTACCGGAGt                    >  1:19996605/1‑35 (MQ=255)
                 gATGTGCTTCAAAACTACAGCCAGTTACCGGAGTc                   >  1:340214/1‑35 (MQ=255)
                 gATGTGCTGCAAAACTACAGCCAGTTACCGGAGTc                   >  1:18897051/1‑35 (MQ=255)
                 gATGTGCTGCAAAACTACAGCCAGTTACCGGAGTc                   >  1:18254039/1‑35 (MQ=255)
                 gATGTGCTGCAAAACTACAGCCAGTTACCGGAGTc                   >  1:9412153/1‑35 (MQ=255)
                  aTGTGCCGCAAAACTACAGCCAGTTACCGGAGTcc                  >  1:19396395/1‑35 (MQ=255)
                    gtgCTGCAAAACTACAGCCAGTTACCGGAGTCCAt                >  1:6427624/1‑35 (MQ=255)
                     tgctgcAAAACTACAGCCAGTTACCGGAGTCCATg               >  1:12546308/1‑35 (MQ=255)
                     tgctgcAAAACTACAGCCAGTTACCGGAGTCCATg               >  1:5436985/1‑35 (MQ=255)
                       ctgcAAAACTACAGCCAGTTACCGGAGTCCATGCa             >  1:12000479/1‑35 (MQ=255)
                        tgcAAAACTACAGCCAGTTACCGGAGTCCATGCAg            >  1:17369784/1‑35 (MQ=255)
                        tacaacccccCAGCCAGTTACCGGAGTCCATGCAg            >  1:3104288‑M1/11‑35 (MQ=255)
                        cacaacccccCAGCCAGTTACCGGAGTCCATGCAg            >  1:19055405‑M1/11‑35 (MQ=255)
                         gcAAAACTACAGCCAGTTACCGGAGTCCATGCAgg           >  1:17141415/1‑35 (MQ=255)
                         acaacccccCAGCCAGTTACCGGAGTCCATGCAgg           >  1:8148853‑M1/10‑35 (MQ=255)
                          caacccccCAGCCAGTTACCGGAGTCCATGCAGGa          >  1:10053933‑M1/9‑35 (MQ=255)
                          caacccccCAGCCAGTTACCGGAGTCAATGCAGGa          >  1:6856697‑M1/9‑35 (MQ=255)
                          cAAAACTACAGCCAGTTACCGGAGTCCACGCATGa          >  1:10356/1‑35 (MQ=37)
                          aaacccccCAGCCAGTTACCGGAGTCCATGCAGGa          >  1:11174834‑M1/9‑35 (MQ=255)
                           aacccccCAGCCAGTTACCGGAGTCCATGCAGGAg         >  1:7055214‑M1/8‑35 (MQ=255)
                           aacccccCAGCCAGTTACCGGAGTCCATGCAGGAg         >  1:3061332‑M1/8‑35 (MQ=255)
                           aaaccccCAGCCAGTTACCGGAGTCCATGCAGGAg         >  1:18900140‑M1/8‑35 (MQ=255)
                           aaaaCTACAGCCAGTTACCGGAGTCCATGCAGGAg         >  1:16189747/1‑35 (MQ=255)
                            acccccCAGCCAGTTACCGGAGTCCATGCAGGAgc        >  1:6961041‑M1/7‑35 (MQ=255)
                            aaaCTACAGCCAGTTACCGTAGTCCATGCAGGAgc        >  1:8100749/1‑35 (MQ=255)
                            aaaCTACAGCCAGTTACCGGAGTCCATGCAGGAgc        >  1:12014599/1‑35 (MQ=255)
                            aaaCTACAGCCAGTTACCGGAGTCCATGCAGGAgc        >  1:19236703/1‑35 (MQ=255)
                            aaaCTACAGCCAGTTACCGGAGTCCATGCAGGAgc        >  1:10680163/1‑35 (MQ=255)
                            aaaCTACAGCCAGTTACCGGAGTCCATGCAGGAgc        >  1:16621427/1‑35 (MQ=255)
                            aaaCTACAGCCAGTTACCGGAGTCCATGCAGGAgc        >  1:3740326/1‑35 (MQ=255)
                             cccccCAGCCAGTTACCGGAGTCCATGCAGGAgca       >  1:10157847‑M1/6‑35 (MQ=255)
                             aaCTACAGCCAGTTACCGGCGGCCATGCAGGAgcc       >  1:15644401/1‑34 (MQ=25)
                              ccccCAGCCAGTTACCGGAGTCCATGCAGGAgcag      >  1:1466420‑M1/5‑35 (MQ=255)
                              ccccCAGCCAGTTACCGGAGTCCATGCAGGAgcag      >  1:1728341‑M1/5‑35 (MQ=255)
                              ccccCAGCCAGTTACCGGAGTCCATGCAGGAgcag      >  1:12400399‑M1/5‑35 (MQ=255)
                              aCTACAGCCAGTTACCGGAGTCCATGCAGGAgcag      >  1:12985588/1‑35 (MQ=255)
                              aCTACAGCCAGTTACCGGAGTCCATGCAGGAgcag      >  1:11227676/1‑35 (MQ=255)
                              aCTACAGCCAGTTACCGGAGTCCATGCAGGAgcag      >  1:5637724/1‑35 (MQ=255)
                              aCTACAGCCAGTTACCGGAGTCCATGCAGGAgcag      >  1:9167819/1‑35 (MQ=255)
                               cccCAGCCAGTTACCGGAGTCCATGCAGGAgcagg     >  1:5647560‑M1/4‑35 (MQ=255)
                               cTACAGCCAGTTACCGGAGTCCATGCAGGAgcagg     >  1:20476511/1‑35 (MQ=255)
                                tACAGCCAGTTACCGGAGTCCATGCAGGAgcaggc    >  1:8010633/1‑35 (MQ=255)
                                tACAGCCAGTTACCGGAGTCCATGCAGGAgcaggc    >  1:1291807/1‑35 (MQ=255)
                                ccCAGCCAGTTACCGGAGTCCATGCAGGAgcaggc    >  1:14761317‑M1/3‑35 (MQ=255)
                                 cCAGCCAGTTACCGGAGTCCATGCAGGAgcaggca   >  1:2013881‑M1/2‑35 (MQ=255)
                                 cCAGCCAGTTACCGGAGTCCATGCAGGAgcaggca   >  1:4133008‑M1/2‑35 (MQ=255)
                                 cCAGCCAGTTACAGGAGTCCATGCAGGAgcaggca   >  1:15103180‑M1/2‑35 (MQ=255)
                                 aCAGCCAGTTACCGGAGTCCATGCAGGAgcaggca   >  1:7346061/1‑35 (MQ=255)
                                 aCAGCCAGTTACCGGAGTCCATGCAGGAgcaggca   >  1:15678091/1‑35 (MQ=255)
                                 aCAGCCAGTTACCGGAGTCCATGCAGGAgcaggca   >  1:19941892/1‑35 (MQ=255)
                                  CAGCCAGTTACCGGAGTCCATGCAGGAgcaggcag  >  1:16607291‑M1/1‑35 (MQ=255)
                                  |                                  
TTTACGCTTATCGTCGCGATGTGCTGCAAAACTACAGCCAGTTACCGGAGTCCATGCAGGAGCAGGCAG  >  REL606/3016792‑3016860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.