New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3826321 =43 (0.420)5 (0.060) 3/42 NT 9.5% coding (314/1662 nt) yidE hypothetical protein
?REL606 = 3885956 58 (0.650)coding (39/1890 nt) gidA glucose‑inhibited division protein A

Only 100 of 101 total aligned reads displayed.

CGGCCATCGCGGCCTCGGTGCCTGCATGACCCCCGCCAATGATGATGACGTCAAAAGGATCCGGATAAA  >  REL606/3885922‑3885990
                                  |                                  
cgGCCATCGCGGCCTCGGTGCCTGCATGACCCCCg                                    <  1:15642728/35‑1 (MQ=255)
 ggCCATCGCGGCCTCGGTGCCTGCATGACCCCCGc                                   <  1:8733523‑M2/35‑2 (MQ=255)
 ggCCATCGCGGCCTCGGTGCCGGCATGACCCCCGc                                   >  1:39411‑M2/1‑34 (MQ=255)
  gCCATCGCGGCCTCGGTGCCTGCATGACCCCCGcc                                  >  1:4368942‑M2/1‑33 (MQ=255)
   ccTTCGCGGCCTCGGTGCCTGCATGACCCCCGcca                                 >  1:5020117‑M2/1‑32 (MQ=255)
   ccATCGCGGCCTCGGTGCCTGCATGACCCCCGcca                                 <  1:14863452‑M2/35‑4 (MQ=255)
   ccATCGCGGCCTCGGTGCATGCATGACCCCCGcca                                 >  1:19313459‑M2/1‑32 (MQ=255)
   ccAGCGCGGCCTCGGTGCCTGCATGACCCCCGcca                                 >  1:16688094‑M2/1‑32 (MQ=255)
    cATCGCGGCCTCGGTGCCTGCATGACCCCCGCCaa                                >  1:16130923/1‑35 (MQ=255)
    cATCGCGGCCTCGGTGCCTGCATGACCCCCGCCaa                                <  1:18941007/35‑1 (MQ=255)
    cATCGCGGCCTCGGTGCCTGCATGACCCCCGCCaa                                >  1:13608913/1‑35 (MQ=255)
     aTCGCTGCCTCGGTGCCTGCATGACCCCCGCCAat                               >  1:16222426/1‑35 (MQ=255)
     aTCGCGGCCTCGGTGCCTGCATGACCCCCGCCAat                               >  1:12274313/1‑35 (MQ=255)
     aTCGCGGCCTCGGTGCCTGCATGACCCCCGCCAat                               >  1:5775570/1‑35 (MQ=255)
     aTCGCGGCCTCGGTGCCTGCATGACCCCCGCCAat                               >  1:5981441/1‑35 (MQ=255)
     aTCGCGGCCTCGGTGCCTGCATGACCCCCGCCAat                               >  1:17639629/1‑35 (MQ=255)
      tCGCGGCCTCGGTGCCTGCATGACCCCCGCCAatg                              >  1:13780476/1‑35 (MQ=255)
       cgcgGCCTCGGTGCCTGCATGACCCCCGCCAatga                             >  1:5439970/1‑35 (MQ=255)
       cgcgGCCTCGGTGCCTGCATGACCCCCGCCAatga                             >  1:3188322/1‑35 (MQ=255)
       cgcgGCCTCGGTGCCTGCATGACCCCCGCCAatga                             >  1:13975218/1‑35 (MQ=255)
        gcgGCCTCGGTGCCTGCATGACCCCCGCCAatgat                            >  1:20059038/1‑35 (MQ=255)
        gcgGCCTCGGTGCCTGCATGACCCCCGCCAatgat                            >  1:13310959/1‑35 (MQ=255)
         cgGCCTCGGTGCCTGCATGCCCCCCGCCAatgatg                           <  1:15897305/35‑1 (MQ=255)
         cgGCCTCGGTGCCTGCATGACCCCCGCCAatgatg                           >  1:7306972/1‑35 (MQ=255)
          ggCCTCGGTGCCTGTATGACCCCCGCCAatgatga                          >  1:20306410/1‑35 (MQ=255)
          ggCCTCGGTGCCTGCATGACCCCCGCCAatgatga                          >  1:13821605/1‑35 (MQ=255)
          ggCCTCGGTGCCTGCATGACCCCCGCCAatgatga                          >  1:431557/1‑35 (MQ=255)
          ggCCTCGGTGCCTGCATGACCCCCGCCAatgatga                          >  1:8284185/1‑35 (MQ=255)
           tccTCGGTCCCTGCATCCCCCCCGCCAatgatgat                         <  1:3677076/34‑1 (MQ=255)
           gCCTCGGTGCCTGCATGCCCCCCGCCAatgatgat                         <  1:16645603/35‑1 (MQ=255)
           gCCTCGGTGCCTGCATGCCCCCCGCCAatgatgat                         <  1:18711055/35‑1 (MQ=255)
           gCCTCGGTGCCTGCATGACCCCAGCCAatgatgat                         <  1:9283065/35‑1 (MQ=255)
            ccTCGGTGCCTGCATGACCCCCGCCAatgatgatg                        >  1:8252425/1‑35 (MQ=255)
             cTCGGTGCCTGCATGCCCCCCGCCAAtgatgatga                       <  1:2489302/35‑1 (MQ=255)
             cTCGGTGCCTGCATGCCCCCCGCCAAtgatgatga                       <  1:3879872/35‑1 (MQ=255)
             cTCGGTGCCTGCATGACCCCCGCCAAtgatgatga                       >  1:4153487/1‑35 (MQ=255)
              tCGGTGCCTGCATGCCCCCCGCCAATGATGATGAc                      <  1:5963296/35‑1 (MQ=255)
              tCGGTGCCTGCATGCCCCCCGCCAATGATGATGAc                      <  1:7616623/35‑1 (MQ=255)
              tCGGTGCCTGCATGCCCCCCGCCAATGATGATGAc                      <  1:8312946/35‑1 (MQ=255)
              tCGGTGCCTGCATGACCCCCGCCAATGATTATGAc                      >  1:10023363/1‑35 (MQ=255)
               cGGTGCCTGCATGCCCCCCGCCAATGATGATGACg                     <  1:3682850/35‑1 (MQ=255)
                ggTGCCTGCATGCCCCCCGCCAATGATGATGACGt                    <  1:14413187/35‑1 (MQ=255)
                ggTGCCTGCATGACCCCCGCCAATGATGATGACGt                    >  1:13969085/1‑35 (MQ=255)
                ggTGCCTGCATCCCCCCCGCCAATGATGATGACGt                    <  1:15708907/35‑1 (MQ=37)
                ggTCCCTGCATGCCCCCCGCCAATGATGATGACGt                    <  1:9045967/35‑1 (MQ=37)
                 gTGCCTGCATGACCCCCGCCAATGATGATGACGTc                   >  1:8128607/1‑35 (MQ=255)
                 gTGCCTGCATGACCCCCGCCAATGATGATGACGTc                   >  1:15700365/1‑35 (MQ=255)
                 gTGCCGGCAAGCCCCCCGCCAATGATGATGACGTc                   <  1:8857963/35‑1 (MQ=25)
                  tGCCTGCATGACCCCCGCCAATGATGATGACGTCa                  >  1:13492021/1‑35 (MQ=255)
                    ccTGCATGCCCCCCGCCAATGATGATGACGTCaaa                <  1:14885730/35‑1 (MQ=255)
                    ccTGCATGACCCCCTCCAATGATGATGACGTCaaa                >  1:3703264/1‑35 (MQ=255)
                    ccTGCATGACCCCCGCCAATTATTATGACGTCaaa                >  1:1085532/1‑35 (MQ=38)
                     cTGCATGCCCCCCGCCAATGATGATGACGTCaaaa               <  1:11896122/35‑1 (MQ=255)
                     cTGCATGACCCCCGCCAATGATGATGACGTCaaaa               >  1:20187644/1‑35 (MQ=255)
                     cTGCATGACCCCCGCCAATGATGATGACGTCaaaa               >  1:13659242/1‑35 (MQ=255)
                     cTGCATGACCCCCGCCAATGATGATAACGTCaaaa               <  1:8286647/35‑1 (MQ=255)
                      tGCATGCCCCCCGCCAATGATGATGACGTCAAAAg              <  1:11440113/35‑1 (MQ=255)
                      tGCATGACCCCCGCCAATGATGATGACGTCAAAAg              >  1:17046159/1‑35 (MQ=255)
                      tGCATGACCCCCGCCAATGATGATGACGTCAAAAg              >  1:6570974/1‑35 (MQ=255)
                       gCATGCCCCCCGCCAATGATGATGACGTCAAAAgg             <  1:4226253/35‑1 (MQ=255)
                       gCATGACCCCCGCCAATGATGATTACGTCAAAAgg             >  1:5678325/1‑35 (MQ=255)
                       gCATGACCCCCGCCAATGATGATGACGTCAAAAgg             >  1:7792144/1‑35 (MQ=255)
                       gCATGACCCCCGCCAATGATGATGACGTCAAAAgg             <  1:16733714/35‑1 (MQ=255)
                        cATGCCCCCCGCCAATGATGATGACGTCAAAAGGa            <  1:382747/35‑1 (MQ=255)
                        cATGCCCCCCGCCAATGATGATGACGTCAAAAGGa            <  1:6490319/35‑1 (MQ=255)
                         aTGCCCCCCGCCAATGATGATGACGTCAAAAGGAt           <  1:789781/35‑1 (MQ=255)
                         aTGACCCCCGCCAATGATGATGACGTCAAAAGGAt           >  1:3678276/1‑35 (MQ=255)
                         aTGACCCCCGCCAATGATGATGACGTCAAAAGGAt           >  1:5118590/1‑35 (MQ=255)
                          tgccccccGCCAATGATGATGACGTCAAAAGGATc          <  1:5878471/32‑1 (MQ=255)
                          tGACCCCCGCCAATGATGATGACGTCAAAAGGATc          >  1:19035029/1‑35 (MQ=255)
                           gACCCCCGCCAATGATGATGACGTCAAAAGGATcc         >  1:12405202/1‑35 (MQ=255)
                           gACCCCCGCCAATGATGATGACGTCAAAAGGATcc         >  1:14583493/1‑35 (MQ=255)
                           gACCCCCCccaccgatgatgacgatcagaacagca         >  1:7885463‑M2/1‑8 (MQ=255)
                            cccccccccaccgatgatgacgatcagaacagcaa        >  1:752571‑M2/2‑7 (MQ=255)
                            ccccccGCCAATGATGATGACGTCAAAAGGATCCg        <  1:15915154/34‑1 (MQ=255)
                            ccccccGCCAATGATGATGACGTCAAAAGGATCCg        <  1:440663/34‑1 (MQ=255)
                            aCCCCCGCCAATGATGATGACGTCAAAAGGATCCg        >  1:12653575/1‑35 (MQ=255)
                            aCCCCCCccaccgatgatgacgatcagaacagcaa        >  1:7376010‑M2/1‑7 (MQ=255)
                             cccccGCCAATGATGATGACGTCAAAAGGATCCgt       >  1:6248404/1‑34 (MQ=255)
                             cccccGCCAATGATGATGACGTCAAAAGGATCCgg       <  1:12141192/35‑1 (MQ=255)
                             cccccGCCAATGATGATGACGTCAAAAGGATCCgg       >  1:485082/1‑35 (MQ=255)
                             cccccGCCAATGATGATGACGTCAAAAGGATCCgg       <  1:7340197/35‑1 (MQ=255)
                             cccccGCAAATGATGATGACGTCAAAAGGATCCgg       <  1:324471/35‑1 (MQ=255)
                             cccccCccaccgatgatgacgatcagaacagcaaa       >  1:12042794‑M2/1‑6 (MQ=255)
                             cccccCccaccgatgatgacgatcagaacagcaaa       >  1:13702779‑M2/1‑6 (MQ=255)
                              ccccCccaccgatgatgacgatcagaacagcaaac      >  1:18638028‑M2/1‑5 (MQ=255)
                               cccGCCAATGATGATGACGTCAAAAGGATCCGGAt     >  1:119063/1‑35 (MQ=255)
                               cccGCCAATGATGATGACGTCAAAAGGATCCGGAt     >  1:5773262/1‑35 (MQ=255)
                               cccCccaccgatgatgacgatcagaacagcaaaca     >  1:19357248‑M2/1‑4 (MQ=255)
                                ccGCCAATGATGATGACGTCAAAAGGATCCGGATa    <  1:7189866/35‑1 (MQ=255)
                                ccGCCAATGATGATGACGTCAAAAGGATCCGGATa    <  1:2053190/35‑1 (MQ=255)
                                ccGCCAATGATGATGACGTCAAAAGGATCCGGATa    <  1:1808560/35‑1 (MQ=255)
                                ccGCCAATGATGATGACGTCAAAAGGATCCGGATa    >  1:9126931/1‑35 (MQ=255)
                                ccCccaccgatgatgacgatcagaacagcaaacag    >  1:6782207‑M2/1‑3 (MQ=255)
                                ccCccaccgatgatgacgatcagaacagcaaacag    >  1:2400438‑M2/1‑3 (MQ=255)
                                ccCccaccgatgatgacgatcagaacagcaaacag    >  1:11309648‑M2/1‑3 (MQ=255)
                                ccCccaccgatgatgacgatcagaacagcaaacag    >  1:19525106‑M2/1‑3 (MQ=255)
                                  gCCAATGATGATGACGTCAAAAGGATCCGGATaaa  <  1:11918135/35‑1 (MQ=255)
                                  gCCAATGATGATGACGTCAAAAGGATCCGGATaaa  >  1:11932379/1‑35 (MQ=255)
                                  gCCAATGATGATGACGTCAAAAGGATCCGGATaaa  <  1:8408186/35‑1 (MQ=255)
                                  |                                  
CGGCCATCGCGGCCTCGGTGCCTGCATGACCCCCGCCAATGATGATGACGTCAAAAGGATCCGGATAAA  >  REL606/3885922‑3885990

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.