New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 285065 = | 85 (0.830) | 8 (0.120) | 3/30 | NT | 14.3% | coding (529/4257 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
? | REL606 | = 3978905 | 43 (0.670) | coding (1426/2262 nt) | metE | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine methyltransferase |
Only 100 of 200 total aligned reads displayed.
TATTGGTTTTGGCTGGCGTCATTTTTCAGGAAATGACTGGATGGCGGGGGTGAATACTTTTATCGATCA > REL606/285031‑285099 | tatTGGTTTTGGCTGGCGTCATTTTTCAGGAAATg < 1:16708403/35‑1 (MQ=255) tatTGGTTTTGGCTGGCGTCATTTTTCAGGAAATg < 1:3601410/35‑1 (MQ=255) tatTGGTTTTGGCTGGCGTCATTTTTAAGGAAATg < 1:4821659/35‑1 (MQ=255) atcaagcaggccattgttgagcaggaacgtttggg < 1:10119985‑M1/1‑1 (MQ=255) atcaagcaggccattgttgagcaggaacgtttggg < 1:3368843‑M1/1‑1 (MQ=255) atcaagcaggccattgttgagcaggaacgtttggg < 1:18584824‑M1/1‑1 (MQ=255) atcaagcaggccattgttgagcaggaacgtttggg > 1:15388579‑M1/35‑35 (MQ=255) atcaagcaggccatcgttgagcaggaacgtttggg < 1:286832‑M1/1‑1 (MQ=255) tcaagcaggccattgttgagcaggaacgttttgGa < 1:4914183‑M1/2‑1 (MQ=255) tcaagcaggccattgttgagcaggaacgtttggGa < 1:169447‑M1/2‑1 (MQ=255) tcaagcaggccattgttgagcaggaacgtttggGa < 1:4477349‑M1/2‑1 (MQ=255) atTGGTTTTGGCTGGCGTCATTTTTCAGGAAATGa < 1:14126579/35‑1 (MQ=255) atTGGTTTTGGCTGGCGTCATTTTTCAGGAAATGa < 1:18040504/35‑1 (MQ=255) atTGGTTTTGGCTGGCGTCATTTTTCAGGAAATGa < 1:17421243/35‑1 (MQ=255) ttGGTTTTGGCTGGCGTCATTTTTCAGGAAATGAc < 1:6640029/35‑1 (MQ=255) caagcaggccattgttgagcaggaacgtttgtGAc < 1:1823478‑M1/3‑1 (MQ=255) caagcaggccattgttgagcaggaacgtttggGAc > 1:1434493‑M1/33‑35 (MQ=255) caagcaggccattgttgagcaggaacgtttggGAc > 1:1456399‑M1/33‑35 (MQ=255) caagcaggccattgttgagcaggaacgtttggGAc > 1:2146522‑M1/33‑35 (MQ=255) tGGTTTTGGCTGGCGTCATTTTTCAGGAAATGACt < 1:10813239/35‑1 (MQ=255) tGGTTTTGGCTGGCGTCATTTTTCAGGAAATGACt < 1:6245492/35‑1 (MQ=255) tGGTTTTGGCTGGCGTCATTTTTCAGGAAATGACt < 1:1495775/35‑1 (MQ=255) aagcaggccattgttgagcaggaacgtttggGACt < 1:864084‑M1/4‑1 (MQ=255) aagcaggccattgttgagcaggaacgtttggGACt < 1:16180956‑M1/4‑1 (MQ=255) aagcaggccattgttgagcaggaacgtttggGACt > 1:8254607‑M1/32‑35 (MQ=255) aagcaggccattgttgagcaggaacgtttggGACt > 1:708563‑M1/32‑35 (MQ=255) aagcaggccattgttgagcaggaacgtttggGACt > 1:12490915‑M1/32‑35 (MQ=255) agcaggccattgttgagcaggaacgtttggGACTg < 1:13744813‑M1/5‑1 (MQ=255) agcaggccattgttgagcaggaacgtttggGACTg < 1:15911780‑M1/5‑1 (MQ=255) agcaggccattgttgagcaggaacgtttggGACTg > 1:163780‑M1/31‑35 (MQ=255) agcaggccattgttgagcaggaacgtttggGACTg > 1:6681755‑M1/31‑35 (MQ=255) agcaggccattgttgagcaggaacgtttggGACTg > 1:9113318‑M1/31‑35 (MQ=255) gcaggccattgttgagcaggaacgtttggGACTgg < 1:12352770‑M1/6‑1 (MQ=255) gcaggccattgttgagcaggaacgtttggGACTgg > 1:1982808‑M1/30‑35 (MQ=255) caggccattgttgagcaggaacgtttggGActgag < 1:14735309‑M1/7‑3 (MQ=255) caggccattgttgagcaggaacgtttggGACTGGa < 1:17683769‑M1/7‑1 (MQ=255) caggccattgttgagcaggaacgtttggGACTGGa < 1:12631448‑M1/7‑1 (MQ=255) caggccattgttgagcaggaacgtttggGACTGGa < 1:7616638‑M1/7‑1 (MQ=255) caggccattgttgagcaggaacgttcggGACTGGa < 1:3794147‑M1/7‑1 (MQ=255) tttGGCTGGCGTCATTTTTCAGGAAATGACTGGAt < 1:15521441/35‑1 (MQ=255) aggccattgttgagcaggaacgtttggGACTGGAt < 1:7256263‑M1/8‑1 (MQ=255) aggccattgttgagcaggaacgtttggGACTGGAt < 1:9890969‑M1/8‑1 (MQ=255) aggccattgttgagcaggaacgtttggGACTGGAt > 1:19606032‑M1/28‑35 (MQ=255) aggccattgttgagcaggaacgtttggGACTGGAt > 1:13125035‑M1/28‑35 (MQ=255) ttGGCTGGCGTCATTTTTCAGGAAATGACTGGATg < 1:746157/35‑1 (MQ=255) ggccattgttgagcaggaacgttttgGACTGGATg < 1:6152178‑M1/9‑1 (MQ=255) ggccattgttgagcaggaacgtttggGACTGGATg > 1:12123272‑M1/27‑35 (MQ=255) ggccattgttgagcaggaacgtttggGACTGGATg > 1:18298167‑M1/27‑35 (MQ=255) ggccattgttgagcaggaacgtttggGACTGGATg > 1:7511369‑M1/27‑35 (MQ=255) gccattgttgagcaggaacgtttggGACTGGATgg < 1:15332343‑M1/10‑1 (MQ=255) ggctggcGTCATTTTTCAGGAAATGACTGGATGGc < 1:7059541/35‑1 (MQ=255) ccattgttgagcaggaacgtttggGACTGGAtggg < 1:5874702‑M1/11‑2 (MQ=255) gctggcGTCATTTTTCAGGAAATGACTGGATGGCg < 1:6895873/35‑1 (MQ=255) gctggcGTCATTTTTCAGGAAATGACTGGATGGCg < 1:1240913/35‑1 (MQ=255) gctggcGTCATTTTTCAGGAAATGACTGGATGGCg < 1:5971814/35‑1 (MQ=255) gctggcGTCATTTTTCAGGAAATGACTGGATGGCg < 1:836671/35‑1 (MQ=255) cattgttgagcaggaacgtttggGACTGGatgggg < 1:2266948‑M1/12‑3 (MQ=255) ctggcGTCATTTTTCAGGAAATGACTGGATGGCgg > 1:6653722/1‑35 (MQ=255) attgttgagcaggaacgtttggGACTGgatggggg < 1:1906697‑M1/13‑4 (MQ=255) attgttgagcaggaacgtttggGACTGgatggggg < 1:9254145‑M1/13‑4 (MQ=255) attgttgagcaggaacgtttggGACTGgatggggg < 1:3725135‑M1/13‑4 (MQ=255) tggcGTCATTTTTCAGGAAATGACTGGATGGCggg < 1:19231486/35‑1 (MQ=255) tggcGTCATTTTTCAGGAAATGACTGGATGGCggg < 1:6735799/35‑1 (MQ=255) tggcGTCATTTTTCAGGAAATGACTGGATGGCggg < 1:18807337/35‑1 (MQ=255) tggcGTCATTTTTCAGGAAATGACTGGATGGCggg > 1:13508891/1‑35 (MQ=255) ggcGTCATTTTTCAGGAAATGACTGGATGGCgggg > 1:20307974/1‑35 (MQ=255) ggcGTCATTTTTCAGGAAATGACTGGATGGCgggg > 1:2944977/1‑35 (MQ=255) ggcGTCATTTTTCAGGAAATGACTGGATGGCgggg > 1:11335740/1‑35 (MQ=255) ggcGTCATTTTTCAGGAAATGACTGGATGGCgggg > 1:8127739/1‑35 (MQ=255) gttgagcaggaacgtttggGACTGGATGGGggggg < 1:9497143‑M1/16‑1 (MQ=255) ttgagcaggaacgtttggGACTGGATGGggggggg < 1:12855924‑M1/17‑2 (MQ=255) ttgagcaggaacgtttggGACTGGATGGGGGGGGt < 1:2479648‑M1/17‑1 (MQ=255) cGTCATTTTTCAGGAAATGACTGGATGGCGGGGGt > 1:13299252/1‑35 (MQ=255) gTCATTTTTCAGGAAATGACTGGATGGCGGGGGTg < 1:321738/35‑1 (MQ=255) gTCATTTTTCAGGAAATGACTGGATGGCGGGGGTg < 1:896115/35‑1 (MQ=255) tCATTTTTCAGGAAATGACTGGATGGCgggggggg > 1:52978/1‑32 (MQ=255) tCATTTTTCAGGAAATGACTGGATGGCGGGGGTGa < 1:18729919/35‑1 (MQ=255) cATTTTTCAGGAAATGACTGGATGGCGGGGGTGaa < 1:11081733/35‑1 (MQ=255) cATTTTTCAGGAAATGACTGGATGGCGGGGGTGaa < 1:11786340/35‑1 (MQ=255) cATTTTTCAGGAAATGACTGGATGGCGGGGGGGaa > 1:7781460/1‑35 (MQ=255) aTTTTTCAGGAAATGACTGGATGGCGGGGGTGAAt < 1:6173264/35‑1 (MQ=255) aTTTTTCAGGAAATGACTGGATGGCGGGGGGGAAt > 1:11236487/1‑35 (MQ=255) tttttCAGGAAATGACTGGATGGCGGGGGTGAATa < 1:16853459/35‑1 (MQ=255) ttttCAGGAAATGACTGGATGGCGGGGGTGAATAc < 1:10368786/35‑1 (MQ=255) ttCAGGAAATGACTGGATGGCGGGGGTGAATACtt < 1:10451524/35‑1 (MQ=255) ttCAGGAAATGACTGGATGGCGGGGGTGAATACtt < 1:4004944/35‑1 (MQ=255) ttCAGGAAATGACTGGATGGCGGGGGTGAATACtt < 1:42670/35‑1 (MQ=255) tCAGGAAATGACTGGATGGCGGGGGTGAATACttt < 1:3970912/35‑1 (MQ=255) cAGGAAATGACTGGATGGCGGGGGTGAATACtttt < 1:6559136/35‑1 (MQ=255) cAGGAAATGACTGGATGGCGGGGGGGAATACtttt > 1:14906241/1‑35 (MQ=255) aGGAAATGACTGGATGGCGGGGGTGAATACTTTTa < 1:4103351/35‑1 (MQ=255) aGGAAATGACTGGATGGCGGGGGTGAATACTTTTa < 1:17030828/35‑1 (MQ=255) aGGAAATGACTGGATGGCGGGGGTGAATACTTTTa < 1:7024763/35‑1 (MQ=255) ggAAATGACTGGATGGCGTGGGTGAATACTTTTAt > 1:7448679/1‑35 (MQ=255) gAAATGACTGGATGGCGTGGGGGAATACTTTTATc > 1:16452856/1‑35 (MQ=38) gAAATGACTGGATGGCGGGGGGGAATACttttttt > 1:9739600/1‑32 (MQ=37) aaTGACTGGATGGCGGGGGGGGATACTTTTTTCGa > 1:5521817/1‑35 (MQ=25) aTGACTGGATGGCGGGGGTGAATACTTTTATCGAt < 1:7579684/35‑1 (MQ=255) aTGACTGGATGGCGGGGGGGAATACTTTTATCGAt > 1:7158566/1‑35 (MQ=255) tGACTGGATGGCGGGGGTGAATACTTTTATCGATc < 1:1967226/35‑1 (MQ=255) | TATTGGTTTTGGCTGGCGTCATTTTTCAGGAAATGACTGGATGGCGGGGGTGAATACTTTTATCGATCA > REL606/285031‑285099 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |