New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3704935 | 71 (0.690) | 362 (5.280) | 9/32 | NT | 88.4% | intergenic (+1603/+1) | yibG/yibH | hypothetical protein/hypothetical protein |
? | REL606 | = 3741809 | NA (NA) | noncoding (157/768 nt) | IS1 | repeat region |
Only 100 of 1428 total aligned reads displayed.
CTCCCCCCTCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3704922‑3704935 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGCCGTAAAACATGGCAACTGCAGTTCACTTAC < REL606/3741809‑3741776 |||||||| ccCCCCCCTCCCCCCCCCCCCCCTGCCGTAAAACA < 1:16562603/33‑1 ccCCCCCCTCCCCCCCCCCCCCCTGCCGTAAAACA < 1:11189743/33‑1 ccgCCCCTCCCCCCCCCCCCCCTGCCGTAAAACAT < 1:13091166/32‑1 cCCCCCCTCCCCCCCCCCCCCCTGCCGTAAAACAT < 1:19899725/34‑1 ccgCCCTCCCCCCCCCCCCCCTGCCGTAAAACATG < 1:134482/32‑1 CCCCCCTCCCCCCCCCCCCCCTGCCGTAAAACATG < 1:12496193/35‑1 gCCCCCCCCCCCCCCCCCCCTGCCGTAAAACATGG < 1:16338767/34‑1 CCCCCCCCCCCCCCCCCCCCTGCCGTAAAACATGG < 1:10181136/35‑1 CCCCCCCCCCCCCCCCCCCCTGCCGTAAAACATGG < 1:12290255/35‑1 gctCTCCCCCCCCCCCCCCTGCCGTAAAACATGGC < 1:13269454/32‑1 gCCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGC < 1:10001363/34‑1 CCCCTCCCCCCCCCCCCCCTGCCGTAAAACATGGC < 1:11637148/35‑1 CCCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGC < 1:5023491/35‑1 CCCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGC < 1:8260161/35‑1 CCCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCA < 1:7115115/35‑1 CCCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCA < 1:12726152/35‑1 CCCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCA < 1:4839660/35‑1 CCCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCA < 1:15366799/35‑1 CCCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCA < 1:10996631/35‑1 CCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGCA < 1:6633059/35‑1 CCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGCA < 1:2156964/35‑1 CCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGCA < 1:3464658/35‑1 CCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGCA < 1:13544178/35‑1 CCCCCCCCCCCCCCCCCCTGCCGTAAAACATGGCA < 1:953177/35‑1 cccCCCCCCCCCCCCCCTGCCGTAAAACATGGCAA < 1:20246604/32‑1 cccCCCCCCCCCCCCCCTGCCGTAAAACATGGCAA < 1:10546486/32‑1 CCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCAA < 1:5750491/35‑1 CCTCCCCCCCCCCCCCCTGCCGTAAAACATGGCAA < 1:8488334/35‑1 ccCCCCCCCCCCCCCCTGCCGTAAAACATGGCAAC < 1:7309215/33‑1 ccCCCCCCCCCCCCCCTGCCGTAAAACATGGCAAC < 1:4658288/33‑1 ccCCCCCCCCCCCCCCTGCCGTAAAACATGGCAAC < 1:17656568/33‑1 ccCCCCCCCCCCCCCCTGCCGTAAAACATGGCAAC < 1:15839218/33‑1 ttCCCCCCCCCCCCCTGCCGTAAAACATGGCAACT < 1:14925773/33‑1 cCCCCCCCCCCCCCCTGCCGTAAAACATGGCAACT < 1:4540572/34‑1 cCCCCCCCCCCCCCCTGCCGTAAAACATGGCAACT < 1:18251634/34‑1 cCCCCCCCCCCCCCCTGCCGTAAAACATGGCAACT < 1:7792014/34‑1 cCCCCCCCCCCCCCCTGCCGTAAAACATGGAAACT < 1:16987091/34‑1 TCCCCCCCCCCCCCCTGCCGTAAAACATGGCAACT < 1:289379/35‑1 CCCCCCCCCCCCCCTGCCGTAAAACATGGCAACTG < 1:9188639/35‑1 CCCCCCCCCCCCCCTGCCGTAAAACATGGCAACTG < 1:16768607/35‑1 CCCCCCCCCCCCCCTGCCGTAAAACATGGCAACTG < 1:4238951/35‑1 CCCCCCCCCCCCCCTGCCGTAAAACATGGCAACTG < 1:19801274/35‑1 CCCCCCCCCCCCCCTGCCGTAAAACATGGCAACTG < 1:3356437/35‑1 CCCCCCCCCCCCCCTGCCGTAAAACATGGCAACTG < 1:3047848/35‑1 tCCCCCCCCGCCCTGCCGTAAAACATGGCAACTGC < 1:2009064/34‑1 tCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC < 1:14500874/34‑1 CCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC < 1:2045847/35‑1 CCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC < 1:5495623/35‑1 CCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC < 1:1912960/35‑1 CCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC < 1:13953747/35‑1 CCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC < 1:4299801/35‑1 CCCCCCCCCCCCCTGCCGTAAAACATGGCAACTGC < 1:9355949/35‑1 CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA < 1:267106/35‑1 CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA < 1:3568619/35‑1 CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA < 1:3671991/35‑1 CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA < 1:12193846/35‑1 CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA < 1:10798583/35‑1 CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA < 1:6543043/35‑1 CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA < 1:15479819/35‑1 CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA < 1:6337117/35‑1 CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA < 1:6163083/35‑1 CCCCCCCCCCCCTGCCGTAAAACATGGCAACTGCA < 1:1938383/35‑1 CCCCCCCCCCCTGCCGTAAAACATGGCAACTGCAG < 1:10650638/35‑1 CCCCCCCCCCCTGCCGTAAAACATGGAAACTGCAG < 1:18099281/35‑1 CCCCCCCCCCTGCCGTAAAACATGGCAACTGCAGT < 1:3217206/35‑1 CCCCCCCCCCTGCCGTAAAACATGGCAACTGCAGT < 1:8000402/35‑1 CCCCCCCCCCTGCCGTAAAACATGGCAACTGCAGT < 1:4072154/35‑1 CCCCCCCCCCTGCCGTAAAACATGGCAACTGCAGT < 1:15679881/35‑1 CCCCCCCCCCTGCCGTAAAACATGGCAACTGCAGT < 1:8986124/35‑1 CCCCCCCCCTGCCGTAAAACATGGCAACTGCAGTT < 1:18735877/35‑1 CCCCCCCCCTGCCGTAAAACATGGCAACTGCAGTT < 1:16008297/35‑1 CCCCCCCCCTGCCGTAAAACATGGCAACTGCAGTT < 1:6959430/35‑1 CCCCCCCCCTGCCGTAAAACATGGCAACTGCAGTT < 1:14128340/35‑1 CCCCCCCCTGCCGTAAAACATGGCAACTGCAGTTC < 1:5151348/35‑1 CCCCCCCCTGCCGTAAAACATGGCAACTGCAGTTC < 1:19665904/35‑1 CCCCCCCCTGCCGTAAAACATGGCAACTGCAGTTC < 1:18959362/35‑1 CCCCCCCCTGCCGTAAAACATGGCAACTGCAGTTC < 1:1140522/35‑1 CCCCCCCCTGCCGTAAAACATGGAAACTGCAGTTC < 1:16200511/35‑1 CCCCCCCCTGCCGTAAAAAATGGCAACTGCAGTTC < 1:6795767/35‑1 CCCCCCCTGCCGTAAAACATGGCAACTGCAGTTCA < 1:8721943/35‑1 CCCCCCCTGCCGTAAAACATGGCAACTGCAGTTCA < 1:12882306/35‑1 CCCCCCCTGCCGTAAAACATGGAAACTGCAGTTCA < 1:14285429/35‑1 CCCCCCTGCCGTAAAACATGGCAACTGCAGTTCAC < 1:14694550/35‑1 CCCCCTGCCGTAAAACATGGCAACTGCAGTTCACT < 1:3896382/35‑1 CCCCCTGCCGTAAAACATGGCAACTGCAGTTCACT < 1:2296792/35‑1 CCCCCTGCCGTAAAACATGGCAACTGCAGTTCACT < 1:5959274/35‑1 CCCCCTGCCGTAAAACATGGCAACTGCAGTTCACT < 1:13815919/35‑1 CCCCTGCCGTAAAACATGGCAACTGCAGTTCACTT < 1:9684651/35‑1 CCCCTGCCGTAAAACATGGCAACTGCAGTTCACTT < 1:7553959/35‑1 CCCCTGCCGTAAAACATGGCAACTGCAGTTCACTT < 1:15151505/35‑1 CCCCTGCCGTAAAACATGGCAACTGCAGTTCACTT < 1:18475860/35‑1 CCCTGCCGTAGAACATGGCAACTGCAGTTCACTTA < 1:17251822/35‑1 CCCTGCCGTAAAACATGGCAACTGCAGTTCACTTA < 1:8140645/35‑1 CCCTGCCGTAAAACATGGCAACTGCAGTTCACTTA < 1:11988707/35‑1 CCCTGCCGTAAAACATGGCAACTGCAGTTCACTTA < 1:5317748/35‑1 CCCTGCCGTAAAACATGGCAACTGCAGTTCACTTA < 1:983237/35‑1 CCTGCCGTAAAACATGGCAACTGCAGTTCACTTAC < 1:17482300/35‑1 CCTGCCGTAAAACATGGCAACTGCAGTTCACTTAC < 1:17897707/35‑1 CCTGCCGTAAAACATGGCAACTGCAGTTCACTTAC < 1:11845708/35‑1 CCTGCCGTAAAACATGGCAACTGCAGTTCACTTAC < 1:10361655/35‑1 |||||||| CTCCCCCCTCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3704922‑3704935 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGCCGTAAAACATGGCAACTGCAGTTCACTTAC < REL606/3741809‑3741776 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |