New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2749601109 (1.060)21 (0.230) 6/42 NT 19.0% coding (404/2079 nt) fhlA DNA‑binding transcriptional activator
?REL606 4351442 = 84 (0.930)intergenic (+50/‑88) groEL/yjeI chaperonin GroEL/hypothetical protein

Only 100 of 205 total aligned reads displayed.

CAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAG  >  REL606/4351408‑4351475
                                  |                                 
gaaaaagtgttctaatctgccctccgttcggctgg                                   >  1:10742968‑M2/35‑35 (MQ=255)
gaaaaagtgtgctaatctgccctccgttcggctgg                                   >  1:9550333‑M2/35‑35 (MQ=255)
gaaaaagtgtgctaatctgccctccgttcggctgg                                   >  1:953809‑M2/35‑35 (MQ=255)
gaaaaagtgtgctaatctgccctccgttcggctgg                                   >  1:7929560‑M2/35‑35 (MQ=255)
gaaaaagtgtgctaatctgccctccgttcggctgg                                   >  1:2699231‑M2/35‑35 (MQ=255)
gaaaaagtgtgctaatctgccctccgttcggctgg                                   >  1:14160537‑M2/35‑35 (MQ=255)
ctctttgccgtcatccagcagctttttacggctgg                                   >  1:11037933‑M2/35‑35 (MQ=255)
cAGAAATAAACAAACCCCCGGGCAGAAATGTCTgg                                   >  1:10146897/1‑35 (MQ=255)
cAGAAATAAACAAACCCCCGGGCAGAAATGTCTgg                                   <  1:17765252/35‑1 (MQ=255)
 aaaaagtgtgctaatctgctctccgttcggctggg                                  >  1:19953655‑M2/34‑35 (MQ=255)
 aaaaagtgtgctaatctgccctccgttcggctggg                                  >  1:15625991‑M2/34‑35 (MQ=255)
 aaaaagtgtgctaatctgccctccgttcggctggg                                  >  1:2394914‑M2/34‑35 (MQ=255)
 aGAAATAAACAAACCCCCGGGCAGAAATGTCTggg                                  <  1:4100302/35‑1 (MQ=255)
  gAAATAAACAAACCCCCGGGCAGAAATGTCTgggg                                 <  1:17288389/35‑1 (MQ=255)
  ctttgccgtcatccagcagctttttacggctgggg                                 >  1:626954‑M2/33‑35 (MQ=255)
  ctggcggcggaagggcatatttttggtggctgggg                                 >  1:14204639‑M2/33‑35 (MQ=255)
  aaaagtgtgctaatctgccctccgttcggctgggt                                 >  1:3881867‑M2/33‑34 (MQ=255)
  aaaagtgtgctaatctgccctccgttcggctgggt                                 >  1:12114168‑M2/33‑34 (MQ=255)
  aaaagtgtgctaatctgccctccgttcggctgggg                                 >  1:314237‑M2/33‑35 (MQ=255)
  aaaagtgtgctaatctgccctccgttcggctgggg                                 >  1:18848101‑M2/33‑35 (MQ=255)
   aaagtgtgctaatctgccctccgttcggctggggt                                >  1:6831891‑M2/32‑34 (MQ=255)
   aaagtgtgctaatctgccctccgttcggctggggg                                >  1:6602774‑M2/32‑35 (MQ=255)
   aaaTAAACAAACCCCCGGGCAGAAATGTCTtgggg                                >  1:14592627/1‑35 (MQ=255)
   aaaTAAACAAACCCCCGGGCAGAAATGTCTggggg                                <  1:12055651/35‑1 (MQ=255)
   aaaTAAACAAACCCCCGGGCAGAAATGTCTggggg                                <  1:8934843/35‑1 (MQ=255)
    ggcggcggaagggcatatttttggtggctgggggg                               >  1:12195956‑M2/31‑34 (MQ=255)
    ggcggcggaagggcatatttttggtggctgggggg                               >  1:16711175‑M2/31‑34 (MQ=255)
    aagtgtgctaatctgccctccgttcggctggggtt                               >  1:5410414‑M2/31‑33 (MQ=255)
    aagtgtgctaatctgccctccgttcggctgGGTGt                               >  1:15280077‑M2/31‑35 (MQ=255)
    aagtgtgctaatctgccctccgttcggctgGGGGt                               >  1:19241495‑M2/31‑35 (MQ=255)
     tgccgtcatccagcagctttttacggctgGGGGtt                              >  1:1305428‑M2/30‑35 (MQ=255)
     tgccgtcatccagcagctttttacggctgGGGGtt                              >  1:34769‑M2/30‑35 (MQ=255)
     agtgtgctaatctgccctccgttcggctgGGGTtt                              >  1:10071096‑M2/30‑35 (MQ=255)
      tAAACAAACCCCCGGGCAGAAATGTCTGGGGGttt                             >  1:18586768/1‑35 (MQ=255)
      tAAACAAACCCCCGGGCAGAAATGTCTGGGGGttt                             <  1:12016518/35‑1 (MQ=255)
      tAAACAAACCCCCGGGCAGAAATGTCTGGGGGttt                             >  1:17209390/1‑35 (MQ=255)
      gtgtgctaatctgccctccgttcggctgGGTGttt                             >  1:4646702‑M2/29‑35 (MQ=255)
      cggcggaagggcatatttttggtggctgGGGGgtt                             >  1:19443172‑M2/29‑35 (MQ=255)
      cggcggaagggcatatttttggtggctgGGGGgtt                             >  1:19740305‑M2/29‑35 (MQ=255)
      cggcggaagggcatatttttggtggctgGGGGgtt                             >  1:13421852‑M2/29‑35 (MQ=255)
       ggcggaagggcatatttttggtggctgGGGGgttt                            >  1:14316633‑M2/28‑35 (MQ=255)
       ggcggaagggcatatttttggtggctgGGGGgttt                            >  1:9153661‑M2/28‑35 (MQ=255)
       ccgtcatccagcagctttttacggctgGGGGtttt                            >  1:405141‑M2/28‑35 (MQ=255)
       ccgtcatccagcagctttttacggctgGGGGtttt                            >  1:16047544‑M2/28‑35 (MQ=255)
       aaacaaacCCCCGGGCAGAAATGTCTGGGGGtttt                            <  1:1384920/35‑1 (MQ=255)
        gcggaagggcatatttttggtggctgGGGGgtttt                           >  1:14240486‑M2/27‑35 (MQ=255)
        cgtcatccagcagctttttacggctgGGGgtttta                           >  1:755307‑M2/27‑34 (MQ=255)
         tgctaatctgccctccgttcggctgGGTGTTTTTc                          >  1:5779491‑M2/26‑35 (MQ=255)
         tgctaatctgccctccgttcggctgGGGGTTTTTc                          >  1:7328418‑M2/26‑35 (MQ=255)
         cggaagggcatatttttggtggctgGGGggttttt                          >  1:1766910‑M2/26‑34 (MQ=255)
         acaaacCCCCGGGCAGAAATGTCTGGGGGTTTTTc                          >  1:12759200/1‑35 (MQ=255)
          caaacCCCCGGGCAGAAATGTCTGGGGGTTTTTCt                         <  1:12453575/35‑1 (MQ=255)
          caaacCCCCGGGCAGAAATGTCTGGGGGGTTTTCt                         >  1:16401561/1‑35 (MQ=255)
           aaacCCCCGGGCAGAAATGTCTGGGGGTTTTTCtt                        <  1:749950/35‑1 (MQ=255)
            aagggcatatttttggtggctgGGGGTTTTTTttt                       >  1:2435610‑M2/23‑35 (MQ=255)
             agggcatatttttggtggctgGGGGTTTTTTtttt                      >  1:764069‑M2/22‑35 (MQ=255)
             acCCCCGGGCAGAAATGTCTGGGGGTTTTTCtttt                      <  1:433980/35‑1 (MQ=255)
             acCCCCGGGCAGAAATGTCTGGGGGTTTTTCtttt                      >  1:19581405/1‑35 (MQ=255)
             acCCCCGGGCAGAAATGTCTGGGGGTTTTTCtttt                      <  1:8537197/35‑1 (MQ=255)
             acCCCAGGGCAGAAATGTCTGGGGGTTTTTCtttt                      <  1:16258250/35‑1 (MQ=255)
             aatctgccctccgttcggctgGGTGTTTTTCtttt                      >  1:2005270‑M2/22‑35 (MQ=255)
              ccagcagctttttacggctgGGGGTTTTTTTTTTg                     >  1:3740673‑M2/21‑35 (MQ=255)
              cacccGGGCAGAAATGTCTGGGGGTTTTTCTTTTg                     <  1:11883228/33‑1 (MQ=255)
                cccGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGt                   <  1:1231017/35‑1 (MQ=255)
                 ccGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTc                  >  1:4976111/1‑35 (MQ=255)
                 ccGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTc                  <  1:12700336/35‑1 (MQ=255)
                  cGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCa                 <  1:2772267/35‑1 (MQ=255)
                  cGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCa                 >  1:8780407/1‑35 (MQ=255)
                  cGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCa                 <  1:5546740/35‑1 (MQ=255)
                  cGGGCAGAAATATCTGGGGGTTTTTCTTTTGGTCa                 >  1:6764/1‑35 (MQ=255)
                   gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                >  1:7083796/1‑35 (MQ=255)
                   gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                <  1:18095106/35‑1 (MQ=255)
                   gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                >  1:14740/1‑35 (MQ=255)
                   gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                <  1:5190495/35‑1 (MQ=255)
                   gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                <  1:563567/35‑1 (MQ=255)
                   gggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCAt                <  1:19400077/35‑1 (MQ=255)
                    ggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATc               <  1:1746997/35‑1 (MQ=255)
                    ggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATc               <  1:10430879/35‑1 (MQ=255)
                    ggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATc               <  1:11600093/35‑1 (MQ=255)
                    ggCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATc               <  1:14835781/35‑1 (MQ=255)
                     gCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATCt              >  1:10326475/1‑35 (MQ=255)
                     gCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATCt              <  1:16886654/35‑1 (MQ=255)
                      cAGAAATGTCTGGGGGTTTTTCTTTTGGTCATCtt             <  1:8299487/35‑1 (MQ=255)
                       aGAAATGTCTGGGGGTTTTTCTTTTGGTCATCttt            <  1:5863679/35‑1 (MQ=255)
                       aGAAATGTCTGGGGGTTTTTCTTTTGGTCATCttt            >  1:13095439/1‑35 (MQ=255)
                        gAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTc           >  1:11832227/1‑35 (MQ=255)
                        gAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTc           <  1:14001347/35‑1 (MQ=255)
                        gAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTc           >  1:3250585/1‑35 (MQ=255)
                         aaaTGTCTGGGGGTTTTTCTTTTGGTCATCTTTCt          <  1:3771860/35‑1 (MQ=255)
                          aaTGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTa         <  1:705313/35‑1 (MQ=255)
                          aaTGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTa         <  1:6022165/35‑1 (MQ=255)
                          aaTGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTa         <  1:4295335/35‑1 (MQ=255)
                          aaTGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTa         <  1:19120706/35‑1 (MQ=255)
                           aTGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAg        >  1:997888/1‑35 (MQ=255)
                            tGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGt       <  1:19516872/35‑1 (MQ=255)
                             gTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGta      >  1:9626487/1‑35 (MQ=255)
                              tCTGTGGGTTTTTCTTTTGGTCATCTTTCTAGtat     >  1:15710423/1‑35 (MQ=255)
                              tCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGtat     <  1:3678768/35‑1 (MQ=255)
                                tgGGGGTTTTTCTTTTGGTCATCTTTCTAGTATaa   >  1:18490513‑M2/3‑35 (MQ=255)
                                tgGGGGTTTTTCTTTTGGTCATCTTTCTAGTATaa   >  1:17970720‑M2/3‑35 (MQ=255)
                                  |                                 
CAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTTTTGGTCATCTTTCTAGTATAAG  >  REL606/4351408‑4351475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.