New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 285065 =85 (0.830)8 (0.120) 3/30 NT 14.3% coding (529/4257 nt) eaeH attaching and effacing protein, pathogenesis factor
?REL606 = 3978905 43 (0.670)coding (1426/2262 nt) metE 5‑methyltetrahydropteroyltriglutamate‑ homocysteine methyltransferase

Only 100 of 108 total aligned reads displayed.

ATAAATCATGATCGATAAAAGTATTCACCCCCGCCATCCAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/285107‑285065
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccagtcCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT  <  REL606/3978905‑3978872
                                                                             
ATAAATCATGATCGATAAAAGTATTCACCCCCGCC                                            >  1:18269967/1‑35
ATAAATCATGATCGATAAAAGTATTCACCCCCGCC                                            >  1:16715390/1‑35
ATAAATCATGATCGATAAAAGTATTCACCCCCGCC                                            >  1:12078919/1‑35
  AAATCATGATCGATAAAAGTATTCACCCCCGCCAT                                          >  1:2584517/1‑35
  AAATCATGATCGATAAAAGTATTCACCCCCGCCAT                                          >  1:9731499/1‑35
  AAATCATGATCGATAAAAGTATTCACCCCCGCCAT                                          >  1:12048168/1‑35
  AAATCATGATCGATAAAAGTATTCACCCCCGCCAT                                          >  1:8585410/1‑35
   AATCATGATCGATAAAAGTATTCACCCCCGCCATC                                         >  1:67584/1‑35
   AATCATGATCGATAAAAGTATTCACCCCAGCCATC                                         <  1:10148111/35‑1
    ATCATGATCGATAAAAGTATTCACCCCCGCCATCC                                        >  1:11363663/1‑35
    ATCATGATCGATAAAAGTATTCACCCCCGCCATCC                                        >  1:12800121/1‑35
    ATCATGATCGATAAAAGTATTCACCCCCGCCATCC                                        >  1:3307112/1‑35
    ATCATGATCGATAAAAGTATTCACCCCCGCCATCC                                        >  1:15470009/1‑35
    ATCATGATCGATAAAAGTATTCACCCCCGCCATCC                                        >  1:401552/1‑35
     TCATGATCGATAAAAGTATTCACCCCCGCCATCCA                                       <  1:13062777/35‑1
     TCATGATCGATAAAAGTATTCACCCCCGCCATCCA                                       <  1:2054135/35‑1
     TCATGATCGATAAAAGTATTCACCCCCGCCATCCA                                       >  1:5273076/1‑35
      CATGATCGATAAAAGTATTCACCCCCGCCATCCAG                                      >  1:7788846/1‑35
      CATGATCGATAAAAGTATTCACCCCCGCCATCCAG                                      >  1:11516878/1‑35
       ATGATCGATAAAAGTATTCACCCCCGCCATCCAGT                                     >  1:5191006/1‑35
       ATGATCGATAAAAGTATTCACCCCCGCCATCCAGT                                     >  1:11516299/1‑35
       ATGATCGATAAAAGTATTCACCCCCGCCATCCAGT                                     >  1:10420737/1‑35
       ATGATCGATAAAAGTATTCACCCCCGCCATCCAGT                                     >  1:20416171/1‑35
        TGATCGATAAAAGTATTCACCCCCGCCATCAAGTC                                    >  1:18262666/1‑35
                          cCCCCCCCCATCCAGTCCCAAACGTTCCTGCTCAA                  <  1:6673432/34‑1
                          cCCCCCCCCATCCAGTCCCAAACGTTCCTGCTCAA                  <  1:12855924/34‑1
                          cCCCCCCCCATCCAGTCCCAAACGTTCCTGCTCAA                  <  1:19106853/34‑1
                          ACCCCCCCCATCCAGTCCCAAACGTTCCTGCTCAA                  <  1:2479648/35‑1
                           CCCCCCCCATCCAGTCCCAAACGTTCCTGCTCAAC                 <  1:12429249/35‑1
                           CCCCCCCCATCCAGTCCCAAACGTTCCTGCTCAAC                 <  1:9497143/35‑1
                            CCCCCCCATCCAGTCCCAAACGTTCCTGCTCAACA                <  1:12385184/35‑1
                             CCCCCCATCCAGTCCCAAACGTTCCTGCTCAACAA               <  1:11299364/35‑1
                             CCCCCCATCCAGTCCCAAACGTTCCTGCTCAACAA               <  1:14337524/35‑1
                              cccCCATCCAGTCCCAAACGTTCCTGCTCAACAAT              <  1:9254145/32‑1
                              cccCCATCCAGTCCCAAACGTTCCTGCTCAACAAT              <  1:1906697/32‑1
                              cccCCATCCAGTCCCAAACGTTCCTGCTCAACAAT              <  1:16410426/32‑1
                              cccCCATCCAGTCCCAAACGTTCCTGCTCAACAAT              <  1:3725135/32‑1
                              accCCATCCAGTCCCAAACGTTCCTGCTCAACAAT              <  1:14519705/32‑1
                               ccCCATCCAGTCCCAAACGTTCCTGCTCAACAATG             <  1:2266948/33‑1
                                cCCATCCAGTCCCAAACGTTCCTGCTCAACAATGG            <  1:5874702/34‑1
                                 CCATCCAGTCCCAAACGTTCCTGCTCAACAATGGC           <  1:15332343/35‑1
                                  CATCCAGTCCCAAACGTTCCTGCTCAACAATTGCC          >  1:10261748/1‑35
                                  CATCCAGTCCCAAACGTTCCTGCTCAACAATGGgc          <  1:2478982/35‑3
                                  CATCCAGTCCCAAACGTTCCTGCTCAACAATGGCC          <  1:661861/35‑1
                                  CATCCAGTCCCAAACGTTCCTGCTCAACAATGGCC          <  1:7588119/35‑1
                                  CATCCAGTCCCAAACGTTCCTGCTCAACAATGGCC          >  1:12123272/1‑35
                                  CATCCAGTCCCAAACGTTCCTGCTCAACAATGGCC          >  1:18298167/1‑35
                                  CATCCAGTCCAAAACGTTCCTGCTCAACAATGGCC          <  1:6152178/35‑1
                                   ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT         <  1:9890969/35‑1
                                   ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT         <  1:7256263/35‑1
                                   ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT         <  1:7233755/35‑1
                                   ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT         <  1:377875/35‑1
                                   ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT         <  1:16164590/35‑1
                                   ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT         >  1:13125035/1‑35
                                   ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT         <  1:16442134/35‑1
                                   ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT         >  1:11592245/1‑35
                                   ATCCAGTCCCAAACGTTCCTGCTCAACAATGGCCT         >  1:19606032/1‑35
                                    ctCAGTCCCAAACGTTCCTGCTCAACAATGGCCTG        <  1:14735309/33‑1
                                    TCCAGTCCCGAACGTTCCTGCTCAACAATGGCCTG        <  1:3794147/35‑1
                                    TCCAGTCCCAAACGTTCCTGCTCAACAATGGCCTG        <  1:17683769/35‑1
                                    TCCAGTCCCAAACGTTCCTGCTCAACAATGGCCTG        <  1:3187638/35‑1
                                    TCCAGTCCCAAACGTTCCTGCTCAACAATGGCCTG        <  1:748071/35‑1
                                    TCCAGTCCCAAACGTTCCTGCTCAACAATGGCCTG        <  1:7616638/35‑1
                                    TCCAGTCCCAAACGTTCCTGCTCAACAATGGCCTG        <  1:12631448/35‑1
                                     CCAGTCCCAAACGTTCCTGCTCAACAATGGCCTGC       <  1:12352770/35‑1
                                     CCAGTCCCAAACGTTCCTGCTCAACAATGGCCTGC       >  1:17804736/1‑35
                                     CCAGTCCCAAACGTTCCTGCTCAACAATGGCCTGC       >  1:1982808/1‑35
                                     CCAGTCCCAAACGTTCCTGCTCAACAATGGCCTGC       <  1:14891923/35‑1
                                      CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT      <  1:13154652/35‑1
                                      CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT      >  1:6681755/1‑35
                                      CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT      <  1:13744813/35‑1
                                      CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT      <  1:15911780/35‑1
                                      CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT      >  1:12561451/1‑35
                                      CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT      >  1:163780/1‑35
                                      CAGTCCCAAACGTTCCTGCTCAACAATGGCCTGCT      >  1:9113318/1‑35
                                       aacCCCAAACGTTCCTGCTCAACAATGGCCTGCTT     <  1:1284436/32‑1
                                       AGTCCCAAACGTTCCTGCTCAACAATGGCCTGCTT     >  1:8254607/1‑35
                                       AGTCCCAAACGTTCCTGCTCAACAATGGCCTGCTT     >  1:708563/1‑35
                                       AGTCCCAAACGTTCCTGCTCAACAATGGCCTGCTT     >  1:7039548/1‑35
                                       AGTCCCAAACGTTCCTGCTCAACAATGGCCTGCTT     >  1:12490915/1‑35
                                       AGTCCCAAACGTTCCTGCTCAACAATGGCCTGCTT     <  1:864084/35‑1
                                       AGTCCCAAACGTTCCTGCTCAACAATGGCCTGCTT     <  1:7006002/35‑1
                                        GTCCCAAACGTTCCTGCTCAACAATGGCCTGCTTG    >  1:1434493/1‑35
                                        GTCCCAAACGTTCCTGCTCAACAATGGCCTGCTTG    >  1:1456399/1‑35
                                        GTCCCAAACGTTCCTGCTCAACAATGGCCTGCTTG    >  1:15443666/1‑35
                                        GTCCCAAACGTTCCTGCTCAACAATGGCCTGCTTG    >  1:2146522/1‑35
                                        GTCACAAACGTTCCTGCTCAACAATGGCCTGCTTG    <  1:1823478/35‑1
                                        GTCACAAACGTTCCTGCTCAACAATGGCCTGCTTG    <  1:8953542/35‑1
                                         TCCCAAACGTTCCTGCTCAACAATGGCCTGCTTGA   <  1:664611/35‑1
                                         TCCCAAACGTTCCTGCTCAACAATGGCCTGCTTGA   <  1:11206123/35‑1
                                         TCCCAAACGTTCCTGCTCAACAATGGCCTGCTTGA   <  1:4477349/35‑1
                                         TCCCAAACGTTCCTGCTCAACAATGGCCTGCTTGA   <  1:169447/35‑1
                                         TCCAAAACGTTCCTGCTCAACAATGGCCTGCTTGA   <  1:4914183/35‑1
                                          CCCAAACGTTCCTGCTCAACGATGGCCTGCTTGAT  <  1:286832/35‑1
                                          CCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT  <  1:3368843/35‑1
                                          CCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT  >  1:15388579/1‑35
                                          CCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT  <  1:18584824/35‑1
                                          CCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT  >  1:1961860/1‑35
                                          CCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT  >  1:7067580/1‑35
                                          CCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT  <  1:10119985/35‑1
                                                                             
ATAAATCATGATCGATAAAAGTATTCACCCCCGCCATCCAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/285107‑285065
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccagtcCCAAACGTTCCTGCTCAACAATGGCCTGCTTGAT  <  REL606/3978905‑3978872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.