New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 947579 =44 (0.430)9 (0.090) 4/46 NT 13.7% coding (442/1767 nt) cydD fused cysteine transporter subunits of ABC superfamily: membrane component/ATP‑binding component
?REL606 = 3484563 71 (0.720)coding (887/1017 nt) rtcA RNA 3'‑terminal‑phosphate cyclase

CTATGCACGCTATCTGCCGCAAATGGCGCTGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/947613‑947579
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGCGCGGGGGAATTTACGGTCGCCCATCCCTCATG  <  REL606/3484563‑3484530
                                                                     
CTATGCACGCTATCTGCCGCAAATGGCGCTGGCAG                                    >  1:13163040/1‑35
CTATGCACGCTATCTGCCGCAAATGGCGCTGGCAG                                    <  1:6544011/35‑1
CTATGCACGCTATCTGCCGCAAATGGCGCTGGCAG                                    <  1:1457965/35‑1
CTATGCACGCTATCCGCCGCAAATGGCGCTGGCAG                                    >  1:4780053/1‑35
 TATGCACGCTATCTGCCGCAAATGGCGCTGGCAGG                                   >  1:4216318/1‑35
 TATGCACGCTATCTGCCGCAAATGGCGCTGGCAGG                                   >  1:2678884/1‑35
 TATGCACGCTATCTGCCGCAAATGGCGCTGGCAGG                                   >  1:2862917/1‑35
  ATGCACGCTATCTGCCGCAAATGGCGCTGGCAGGg                                  >  1:7648641/1‑34
  ATGCACGCTATCTGCCGCAAATGGCGCTGGCAGGg                                  >  1:434466/1‑34
   TGCACGCTATCTGCCGCAAATGGCGCTGGCAGGgg                                 >  1:8337776/1‑33
    GCACGCTATCTGCCGCAAATGGCGCTGGCAGGggt                                >  1:1819377/1‑32
    GCACGCTATCTGCCGCAAATGGCGCTGGCAGGggt                                >  1:19333036/1‑32
     CACGCTATCTGCCGCAAATGGCGCTGGCAGGGGCG                               >  1:12107323/1‑35
      ACGCTATCTGCCGCAAATGGCGCTGGCAGGGGCGG                              >  1:15586514/1‑35
      ACGCTATCTGCCGCAAATGGCGCTGGCAGGGGCGG                              >  1:15578649/1‑35
      ACGCTATCTGCCGCAAATGGCGCTGGCAGGGGCGG                              >  1:7857771/1‑35
       CGCTATCTGCCGCAAATGGCGCTGGCAGGGGCGGG                             >  1:12936375/1‑35
       CGCTATCTGCCGCAAATGGCGCTGGCAGGGGCGGG                             >  1:8993110/1‑35
        GCTATCTGCCGCAAATGGCGCTGGCAGGGGCGGGG                            >  1:7841236/1‑35
        GCTATCTGCCGCAAATGGCGCTGGCAGGGGCGGGG                            >  1:7955494/1‑35
        GCTATCTGCCGCAAATGGCGCTGGCAGGGGCGGGG                            >  1:85370/1‑35
         CTATCTGCCGCAAATGGCGCTGGCAGGGGCGGGGG                           >  1:8142361/1‑35
                                  GGCGCGGGGGAATTTACGGTCGCCCATCCCTCATG  >  1:16528948/1‑35
                                  GGCGCGGGGGAATTTACGGTCGCCCATCCCTCATG  <  1:14568140/35‑1
                                  GGCGCGGGGGAATTTACGGTCGCCCATCCCTCATG  <  1:8169128/35‑1
                                                                     
CTATGCACGCTATCTGCCGCAAATGGCGCTGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/947613‑947579
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGCGCGGGGGAATTTACGGTCGCCCATCCCTCATG  <  REL606/3484563‑3484530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.