New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 167341370 (0.680)24 (0.250) 7/44 NT 28.7% intergenic (‑147/+244) uidA/uidR beta‑D‑glucuronidase/DNA‑binding transcriptional repressor
?REL606 = 4601575 55 (0.580)intergenic (+52/‑70) ytjA/yjjU hypothetical protein/predicted esterase

Only 100 of 157 total aligned reads displayed.

AAAAGAACTGACACCGCGATCAAAAAACCAAAAACTGCAATACCCACAGCGTGATATAGATCGCATTA  >  REL606/1673380‑1673447
                                 |                                  
aaaaGAACTGACACCGCGATCAAAAAACCAAAAAc                                   >  1:19270882/1‑35 (MQ=255)
aaaaGAACTGACACCGCGATCAAAAAACCAAAAAc                                   >  1:6814215/1‑35 (MQ=255)
aaaaGAACTGACACCGCGATCAAAAAACCAAAAAc                                   >  1:3809640/1‑35 (MQ=255)
aaaaGAACTGACACCGCGATCAAAAAACCAAAAAc                                   <  1:12786870/35‑1 (MQ=255)
 agaGAACTGACACCGCGATCAAAAAACCAAAAACt                                  <  1:6208694/33‑1 (MQ=255)
 aaaGAACTGACACCGCGATCAAAAAACCAAAAACt                                  >  1:7068512/1‑35 (MQ=255)
 aaaGAACTGACACCGCGATCAAAAAACCAAAAACt                                  <  1:19052927/35‑1 (MQ=255)
 aaaGAACTGACACCGCGATCAAAAAACCAAAAACt                                  >  1:14282465/1‑35 (MQ=255)
 aaaGAACTGACACCGCGATCAAAAAACCAAAAACt                                  >  1:7969037/1‑35 (MQ=255)
  aaGAACTGACACCGCGATCAAAAAACCAAAAACTg                                 >  1:3452133/1‑35 (MQ=255)
  aaGAACTGACACCGCGATCAAAAAACCAAAAACTg                                 >  1:18634404/1‑35 (MQ=255)
  aaGAACTGACACCGCGATCAAAAAACCAAAAACTg                                 >  1:18107513/1‑35 (MQ=255)
  aaGAACTGACACCGCGATCAAAAAACCAAAAACTg                                 >  1:8116723/1‑35 (MQ=255)
   aGAACTGACACCGCGATCAAAAAACCAAAAACTGc                                <  1:18612565/35‑1 (MQ=255)
    gAACTGACACCGCGATCAAAAAACCAAAAACTGCa                               <  1:16978547/35‑1 (MQ=255)
    gAACTGACACCGCGATCAAAAAACCAAAAACTGCa                               <  1:15489201/35‑1 (MQ=255)
     aaCTGACACCGCGATCAAAAAACCAAAAACTGCaa                              <  1:8254434/35‑1 (MQ=255)
     aaCTGACACCGCGATCAAAAAACCAAAAACTGCaa                              >  1:8518087/1‑35 (MQ=255)
     aaCTGACACCGCGATCAAAAAACCAAAAACTGCaa                              >  1:2476437/1‑35 (MQ=255)
     aaCTGACACCGCGATCAAAAAAACAAAAACTGCaa                              <  1:2865712/35‑1 (MQ=255)
      aCTGACACCGCGATCAAAAAACCAAAAACTGCAAt                             >  1:9130203/1‑35 (MQ=255)
      aCTGACACCGCGATCAAAAAACCAAAAACTGCAAt                             >  1:10417740/1‑35 (MQ=255)
      aCTGACACCGCGATCAAAAAACCAAAAACTGCAAt                             <  1:6648128/35‑1 (MQ=255)
        tGACACCGCGATCAAAAAACCAAAAACTGCAATAc                           >  1:7312256/1‑35 (MQ=255)
        tGACACCGCGATCAAAAAACCAAAAACTGCAATAc                           <  1:10658083/35‑1 (MQ=255)
        tGACACCGCGATCAAAAAACCAAAAACTGCAATAc                           >  1:15621503/1‑35 (MQ=255)
         gACACCGCGATCAAAAAACCAAAAACTGCAATAcc                          >  1:8266085/1‑35 (MQ=255)
         gACACCGCGATCAAAAAACCAAAAACTGCAATAcc                          <  1:5165215/35‑1 (MQ=255)
          acacCGCGATCAAAAAACCAAAAACTGCAATAccc                         >  1:18518542/1‑35 (MQ=255)
          acacCGCGATCAAAAAACCAAAAACTGCAATAccc                         >  1:5401034/1‑35 (MQ=255)
          acacCGCGATCAAAAAACCAAAAACTGCAATAccc                         <  1:20353280/35‑1 (MQ=255)
           ccccGCGATCAAAAAACCAAAAACTGCAATACCca                        <  1:9585715/33‑1 (MQ=255)
           cacCTCGATCAAAAAACCAAAAACTGCAATACCca                        >  1:11517110/1‑35 (MQ=255)
           cacCGCGATCAAAAAACCAAAAACTGCAATACCca                        >  1:10018025/1‑35 (MQ=255)
           cacCGCGATCAAAAAACCAAAAACTGCAATACCca                        <  1:4207035/35‑1 (MQ=255)
           cacCGCGATCAAAAAACCAAAAACTGCAATACCca                        >  1:14873059/1‑35 (MQ=255)
           cacCGCGATCAAAAAACCAAAAACTGCAATACCca                        >  1:12758867/1‑35 (MQ=255)
            cccGCGATCAAAAAACCAAAAACTGCAATACCcac                       <  1:2671416/34‑1 (MQ=255)
            acCGCGATCAAAAAACCAAAAACTGCAATACCcac                       >  1:19951016/1‑35 (MQ=255)
              cgcgATCAAAAAACCAAAAACTGCAATACCCACAg                     >  1:10630933/1‑35 (MQ=255)
               gcgATCAAAAAACCAAAAACTGCAATACCCACAGc                    >  1:10041270/1‑35 (MQ=255)
               gcgATCAAAAAACCAAAAACTGCAATACCCACAGc                    >  1:4056704/1‑35 (MQ=255)
                  ttcAAAAAAACAAAAAaagccagtccgctggactg                 <  1:9482729‑M1/34‑20 (MQ=255)
                  tccaaAAAACCAAAAAaagccagtccgctggactg                 <  1:1639897‑M1/33‑20 (MQ=255)
                  aTCAAAAAACCAAAAACTGCAATACCCACAGCGTg                 >  1:13672997/1‑35 (MQ=255)
                  aTCAAAAAACCAAAAACTGCAATACCCACAGCGTg                 >  1:6623243/1‑35 (MQ=255)
                   ccaAAAAACCCAAAAaagccagtccgctggactgg                <  1:3710027‑M1/34‑21 (MQ=255)
                    cAAAAAACCAAAAACTGCAATACCCACAGCGTGat               >  1:10254942/1‑35 (MQ=255)
                     aaaaaaCCAAAAAaagccagtccgctggactggct              <  1:1633777‑M1/35‑23 (MQ=255)
                     aaaaaaCCAAAAACTGCAATACCCACAGCGTGata              >  1:15061373/1‑35 (MQ=255)
                     aaaaaaCCAAAAACTGCAATACCCACAGCGTGata              >  1:15593069/1‑35 (MQ=255)
                     aaaaaaACAAAAAaagccagtccgctggactggct              <  1:641020‑M1/35‑23 (MQ=255)
                     aaaaaaACAAAAAaagccagtccgctggactggct              <  1:2331310‑M1/35‑23 (MQ=255)
                      aaaaaCCAAAAAaagccagtccgctggactggctt             <  1:12163945‑M1/35‑24 (MQ=255)
                      aaaaaACAAAAAaagccagtccgctggactggctt             <  1:19387833‑M1/35‑24 (MQ=255)
                       aaaaCCAGAAAaagccagtccgctggactggcttt            <  1:4367675‑M1/35‑25 (MQ=255)
                        aaaCCCAAAAaagccagtccgctggactggctttg           <  1:5574627‑M1/35‑26 (MQ=255)
                        aaaCCAAAAACTGCAATACCCACAGCTTGATATAg           >  1:20346639/1‑35 (MQ=255)
                        aaaCCAAAAACTGCAATACCCACAGCGTGATATAg           >  1:4327907/1‑35 (MQ=255)
                        aaaACAAAAAaagccagtccgctggactggctttg           <  1:328481‑M1/35‑26 (MQ=255)
                         aaCCAAAAAaagccagtccgctggactggctttgg          <  1:3458783‑M1/35‑27 (MQ=255)
                         aaCCAAAAACTGCAATACCCACAGCGTGATATAGa          >  1:12351549/1‑35 (MQ=255)
                         aaCCAAAAACTGCAATACCCACAGCGTGATATAGa          >  1:13388146/1‑35 (MQ=255)
                         aaCCAAAAACTGCAATACCCACAGCGTGATATAGa          >  1:15812338/1‑35 (MQ=255)
                         aaCCAAAAACTGCAATACCCACAGCGTGATATAGa          >  1:5478596/1‑35 (MQ=255)
                          aCCCAAAAaagccagtccgctggactggctttgga         <  1:11612747‑M1/35‑28 (MQ=255)
                          aCCAAAAAaagccagtccgctggactggctttgga         <  1:9772349‑M1/35‑28 (MQ=255)
                          aCCAAAAACTGCAATACCCACAGCGTGATATAGAt         >  1:6757065/1‑35 (MQ=255)
                          aCCAAAAACTGCAATACCCACAGCGTGATATAGAt         >  1:19073661/1‑35 (MQ=255)
                          aCCAAAAACTGCAATACCCACAGCGTGATATAGAt         >  1:17752698/1‑35 (MQ=255)
                           ccAAAAAaagccagtccgctggactggctttggat        <  1:17031991‑M1/35‑29 (MQ=255)
                           ccAAAAACTGCAATACCCACAGCGTGATATAGATc        >  1:12648968/1‑35 (MQ=255)
                           caaaaaaaagccagtccgctggactggctttggat        <  1:3278654‑M1/33‑29 (MQ=255)
                           caaaaaaaagccagtccgctggactggctttggat        <  1:14225253‑M1/33‑29 (MQ=255)
                           caaaaaaCTGCAATACCCACAGCGTGATATAGATc        <  1:13064171/33‑1 (MQ=255)
                            cAAAAGCTGCAATACCCACAGCGTGATATAGATCg       <  1:20030965/35‑1 (MQ=255)
                            cAAAACCTGCAATACCCACAGCGTGATATAGATCg       <  1:996487/35‑1 (MQ=255)
                            cAAAAAaagccagtccgctggactggctttggata       <  1:9332146‑M1/35‑30 (MQ=255)
                            cAAAAAaagccagtccgctggactggctttggata       <  1:14609413‑M1/35‑30 (MQ=255)
                            cAAAAACTGCAATACCCACAGCGTGATATAGATCg       >  1:16610819/1‑35 (MQ=255)
                            aaaaaaaagccagtccgctggactggctttggata       <  1:16257160‑M1/34‑30 (MQ=255)
                             aaaaaaagccagtccgctggactggctttggataa      <  1:7135542‑M1/35‑31 (MQ=255)
                             aaaaaCTGCAATACCCACAGCGTGATATAGATCGc      <  1:18923372/35‑1 (MQ=255)
                             aaaaaCTGCAATACCCACAGCGTGATATAGATCGc      >  1:18762354/1‑35 (MQ=255)
                              aaaaaagccagtccgctggactggctttggataaa     <  1:4602315‑M1/35‑32 (MQ=255)
                              aaaaCTGCAATACCCACAGCGTGATATAGATCGCa     <  1:18903477/35‑1 (MQ=255)
                              aaaaCTGCAATACCCACAGCGTGATATAGATCGCa     >  1:18545702/1‑35 (MQ=255)
                              aaaaCTGCAATACCCACAGCGTGATATAGATCGCa     <  1:15356158/35‑1 (MQ=255)
                               aaaaagccagtccgctggactggctttggataaaa    <  1:15850565‑M1/35‑33 (MQ=255)
                               aaaaagccagtccgctggactggctttggataaaa    <  1:17989862‑M1/35‑33 (MQ=255)
                               aaaCTGCAATACCCACAGCGTGATATAGATCGCAt    >  1:19314296/1‑35 (MQ=255)
                                aaaagccagtccgctggactggcttttgataaaat   >  1:2805806‑M1/1‑2 (MQ=255)
                                aaaagccagtccgctggactggctttggataaaat   <  1:6435527‑M1/35‑34 (MQ=255)
                                aaaagccagtccgctggactggctttggataaaat   >  1:6151916‑M1/1‑2 (MQ=255)
                                aaaagccagtccgctggactggctttggataaaan   <  1:4435753‑M1/35‑34 (MQ=255)
                                 aaagccagtcctctggactggctttggataaaatt  >  1:11823070‑M1/1‑1 (MQ=255)
                                 aaagccagtccgctggactggctttggataaaatt  <  1:6434995‑M1/35‑35 (MQ=255)
                                 aCTGCAATACCCACAGCGTGATATAGATCGCATTa  >  1:9982839/1‑35 (MQ=255)
                                 aCTGCAATACCCACAGCGTGATATAGATCGCATTa  >  1:12542704/1‑35 (MQ=255)
                                 aCTGCAATACCCACAGCGTGATATAGATCGCATTa  <  1:16894797/35‑1 (MQ=255)
                                 |                                  
AAAAGAACTGACACCGCGATCAAAAAACCAAAAACTGCAATACCCACAGCGTGATATAGATCGCATTA  >  REL606/1673380‑1673447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.