New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 197907688 (0.860)10 (0.110) 4/44 NT 14.7% coding (595/636 nt) yedZ hypothetical protein
?REL606 = 2901067 35 (0.370)coding (153/579 nt) ygfJ hypothetical protein

TAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1979041‑1979076
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taGCCGGTGACTAAAATAATTCGGCTACAAAACTGC  <  REL606/2901067‑2901034
                                                                      
TAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTT                                     >  1:329468/1‑35
TAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTT                                     >  1:6605154/1‑35
TAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTT                                     >  1:19243840/1‑35
TAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTT                                     >  1:4550901/1‑35
 AGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTA                                    >  1:6783693/1‑35
 AGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTA                                    <  1:12702497/35‑1
 AGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTA                                    >  1:5621301/1‑35
 AGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTA                                    >  1:19211157/1‑35
 AGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTA                                    <  1:15906106/35‑1
 AGCCTTACGGTATAAGAAGTTGCGTTCACTTTTTA                                    <  1:16800143/35‑1
                        tTTCCCTTTTTAGCCGGTGACTAAAATAATTCGGC             <  1:8341456/34‑1
                        tTTCCATTTTTAGCCGGTGACTAAAATAATTCGGC             <  1:16202595/34‑1
                        aTTCCCTTTTTAGCCGGTGACTAAAATAATTCGGC             <  1:248279/34‑1
                         TTCTCTTTTTAGCCGGTGACTAAAATAATTCGGCT            <  1:4204236/35‑1
                         TTCCCTTTTTAGCCGGTGACTAAAATAATTCGGCT            <  1:3980888/35‑1
                         TTCCCTTTTTAGCCGGTGACTAAAATAATTCGGCT            <  1:6396260/35‑1
                          TCCCTTTTTAGCCGGTGACTAAAATAATTCGGCTA           <  1:6615575/35‑1
                           CCCTTTTTAGCCGGTGACTAAAATAATTCGGCTAC          <  1:8996305/35‑1
                           CCCTTTTTAGCCGGTGACTAAAATAATTCGGCTAC          <  1:2459916/35‑1
                            CCTTTTTAGCCGGTGACTAAAATAATTCGGCTACA         <  1:4385582/35‑1
                             ccTTTTAGCCGGTGACTAAAATAATTCGGCTACAA        <  1:12824940/33‑1
                             caTTTTAGCCGGTGACTAAAATAATTCGGCTACAA        <  1:4828729/33‑1
                             CTTTTTAGCCGGTGACTAAAATAATTCGGCTACAA        <  1:4818637/35‑1
                              TTTTTAGCCGGTGACTAAAATAATTCGGCTACAAA       <  1:1665787/35‑1
                              TTTTTAGCCGGTGACTAAAATAATTCGGCTACAAA       <  1:1111063/35‑1
                               cTTTAGCCGGTGACTAAAATAATTCGGCTACAAAA      <  1:11713726/34‑1
                               TTTTAGCCGGTGACTAAAATAATTCGGCTACAAAA      <  1:19725020/35‑1
                                TTTAGCCGGTGACTAAAATAATTCGGCTACAAAAC     <  1:14861041/35‑1
                                TTTAGCCGGTGACTAAAATAATTCGGCTACAAAAC     <  1:5579813/35‑1
                                  TAGCCGGTGACTAAAATAATTCGGCTACAAAACTG   <  1:15248742/35‑1
                                  TAGCCGGTGACTAAAATAATTCGGCTACAAAACTG   <  1:10852697/35‑1
                                  TAGCCGGTGACTAAAATAATTCGGCTACAAAAATG   >  1:12255432/1‑35
                                  TAGCCGGTGACTAAAATAATTCGGCTACAAAAATG   >  1:14975822/1‑35
                                   AGCCGGTGACTAAAATAATTCGGCTACAAAACTGC  >  1:13941183/1‑35
                                   AGCCGGTGACTAAAATAATTCGGCTACAAAACTGC  >  1:8967712/1‑35
                                                                      
TAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1979041‑1979076
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taGCCGGTGACTAAAATAATTCGGCTACAAAACTGC  <  REL606/2901067‑2901034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.