New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1286707 =97 (0.940)17 (0.210) 5/38 NT 21.4% intergenic (+31/‑152) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein
?REL606 = 4286236 48 (0.590)coding (386/930 nt) alsK D‑allose kinase

Only 100 of 247 total aligned reads displayed.

CTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAG  >  REL606/1286673‑1286741
                                  |                                  
cgggcatggcaagcgaatgaatatgccgtggtggg                                    <  1:4393926‑M1/1‑1 (MQ=255)
cTAAGCGAATTTTAGTTCACATAGACCCTGCTTcg                                    >  1:4691168/1‑35 (MQ=255)
 tAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg                                   >  1:14300287/1‑35 (MQ=255)
 tAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg                                   >  1:6517403/1‑35 (MQ=255)
 tAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg                                   <  1:1383912/35‑1 (MQ=255)
 gtgcatggcaagcgaatgaatatgccgtggtgggg                                   >  1:10905641‑M1/34‑35 (MQ=255)
 gggcatggcaagcgaatgaatatgccgttgtgggg                                   <  1:1050444‑M1/2‑1 (MQ=255)
 gggcatggcaagcgaatgaatatgccgtggtgggg                                   >  1:1072083‑M1/34‑35 (MQ=255)
 gggcatggcaagcgaatgaatatgccgtggtgggg                                   <  1:3161972‑M1/2‑1 (MQ=255)
 gggcatggcaagcgaatgaatatgccgtggggggg                                   <  1:5468912‑M1/2‑1 (MQ=255)
 cgagataggccgccagaaccagttgttgcgtaagg                                   <  1:7478268‑M1/2‑1 (MQ=255)
 cgagataggccgccagaaccagttgttgcgtaagg                                   >  1:15242602‑M1/34‑35 (MQ=255)
 cgagataggccgccagaaccagttgttgcgtaagg                                   <  1:16854641‑M1/2‑1 (MQ=255)
  ggcatggcaagcgaatgaatatgccgtggtggggg                                  <  1:15679843‑M1/3‑2 (MQ=255)
  ggcatggcaagcgaatgaatatgccgtggtggGGc                                  >  1:8611063‑M1/33‑35 (MQ=255)
  ggcatggcaagcgaatgaatatgccgtggtggGGc                                  <  1:12140398‑M1/3‑1 (MQ=255)
  ggcatggcaagcgaatgaatatgccgtgggggGGc                                  <  1:2609840‑M1/3‑1 (MQ=255)
  gagataggccgccagaaccagttgttgcgtaaGGc                                  <  1:9574813‑M1/3‑1 (MQ=255)
  aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                  <  1:2011435/35‑1 (MQ=255)
  aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                  >  1:16639513/1‑35 (MQ=255)
  aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                  >  1:11615436/1‑35 (MQ=255)
  aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                  <  1:19886127/35‑1 (MQ=255)
  aaGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                  <  1:18958224/35‑1 (MQ=255)
   gcatggcaagcgaatgaatatgccgtggtgggggg                                 <  1:20097113‑M1/4‑3 (MQ=255)
   gcatggcaagcgaatgaatatgccgtggtgggggg                                 <  1:5377510‑M1/4‑3 (MQ=255)
   gcatggcaagcgaatgaatatgccgtggtggGGCg                                 <  1:13694134‑M1/4‑1 (MQ=255)
   agataggccgccagaaccagttgttgcgtaaGGCg                                 <  1:4089273‑M1/4‑1 (MQ=255)
   aGCGAATTTTAGTTCACATAGACCCTGCTTcggcg                                 >  1:4423726/1‑35 (MQ=255)
   aGCGAATTTTAGTTCACATAGACCCTGCTTcggcg                                 >  1:20294798/1‑35 (MQ=255)
    gataggccgccagaaccagttgttgcgtaaGGCgg                                <  1:15040646‑M1/5‑1 (MQ=255)
    gataggccgccagaaccagttgttgcgtaaGGCgg                                <  1:16554‑M1/5‑1 (MQ=255)
    gatagcccgccagaaccagttgttgcgtaaGGCgg                                >  1:4185554‑M1/31‑35 (MQ=255)
    gCGAATTTTAGTTCACATAGACCCTGCTTcggcgg                                <  1:2360787/35‑1 (MQ=255)
    catggcaagcgaatgaatatgccgtggtggGGCgg                                <  1:1341671‑M1/5‑1 (MQ=255)
    catggcaagcgaatgaatatgccgtgggggGGCgg                                <  1:5710931‑M1/5‑1 (MQ=255)
     cGAATTTTAGTTCACATAGACCCTGCTTCGGCggg                               <  1:10431335/35‑1 (MQ=255)
      tggcaagcgaatgaatatgccgtggtggGGCgggg                              <  1:6966333‑M1/7‑1 (MQ=255)
      taggccgccagaaccagttgttgcgtaaGGCgggg                              <  1:12547507‑M1/7‑1 (MQ=255)
      gAATTTTAGTTCACATAGACCCTGCTTCGGCgggg                              >  1:9641240/1‑35 (MQ=255)
       aggccgccagaaccagttgttgcgtaaGGCGGGGt                             <  1:10396277‑M1/8‑1 (MQ=255)
       aaTTTTAGTTCACATAGACCCTGCTTCGGCggggg                             >  1:15123269/1‑34 (MQ=255)
       aaTTTTAGTTCACATAGACCCTGCTTCGGCGGGGt                             <  1:18399391/35‑1 (MQ=255)
       aaTTTTAGTTCACATAGACCCTGCTTCGGCGGGGt                             <  1:20594066/35‑1 (MQ=255)
        ggccgccagaaccagttgttgcgtaaGGCGGGGtt                            <  1:6858154‑M1/9‑1 (MQ=255)
        gcaagcgaatgaatatgccgtggtggGGCGGGgtg                            <  1:3969776‑M1/9‑2 (MQ=255)
        gcaagcgaatgaatatgccgtggtggGGCGGGGtt                            <  1:14274986‑M1/9‑1 (MQ=255)
        aTTTTAGTTCACATAGACCCTGCTTCGGCtggggt                            >  1:10054941/1‑33 (MQ=37)
         ttttAGTTCACATAGACCCTGCTTCGGCGGGGgtt                           >  1:9029796/1‑35 (MQ=255)
         caagcgaatgaatatgccgtggtggggcgggggtt                           <  1:8449417‑M1/10‑4 (MQ=255)
          tttAGTTCACATAGACCCTGCTTCGGCGGGGgttt                          >  1:7194217/1‑35 (MQ=255)
          tttAGTTCACATAGACCCTGCTTCGGCGGGGgttt                          >  1:6024420/1‑35 (MQ=255)
           ttAGTTCACATAGACCCTGCTTCGGCGGGGttttt                         <  1:13335840/35‑1 (MQ=255)
           ggcgaatgaatatgccgtggtggGGCGGGGgtttt                         <  1:8935846‑M1/12‑1 (MQ=255)
           cgccagaaccagttgttgcgtaaGGCGGGTttttt                         <  1:1097387‑M1/12‑1 (MQ=255)
           cgccagaaccagttgttgcgtaaGGCGGGGttttt                         <  1:5177674‑M1/12‑1 (MQ=255)
            tAGTTCACATAGACCCTGCTTCGGCTGGGgttttt                        >  1:8291697/1‑35 (MQ=37)
            gccagaaccagttgttgcgtaaGGCGGGttttttc                        <  1:15758154‑M1/13‑2 (MQ=255)
            gccagaaccagttgttgcgtaaGGCGGGttttttc                        <  1:2862930‑M1/13‑2 (MQ=255)
             cgaatgaatatgccgtggtggGGCGGGGttttttt                       <  1:16936278‑M1/14‑1 (MQ=255)
             aGTTCACATAGACCCTGCTTCGGCGGGGgtttttt                       >  1:15609287/1‑35 (MQ=255)
             aGTTCACATAGACCCTGCTTCGGCGGGGgtttttt                       >  1:15974824/1‑35 (MQ=255)
              gTTCACATAGACCCTGCTTCTGCGGGGTTTTTTTa                      >  1:7554772/1‑35 (MQ=255)
              gTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTa                      <  1:926473/35‑1 (MQ=255)
              gTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTa                      <  1:4974358/35‑1 (MQ=255)
              cagaaccagttgttgcgtaaGGCGgggtttttctt                      <  1:10246583‑M1/15‑4 (MQ=255)
               ttCACATAGACCCTGCTTCGGCGGGGgtttttttt                     >  1:3722827/1‑33 (MQ=25)
               ttCACATAGACCCTGCTTCGGCGGGGTTTTTTTAt                     <  1:17706267/35‑1 (MQ=255)
               tccacaTAGACCCTGCTTCGGCGGGGGTTTTTTAt                     >  1:576444/3‑35 (MQ=25)
                tCACATAGACCCTGCTTCGGCGGGGTTTTTTTATg                    <  1:15448597/35‑1 (MQ=255)
                tCACATAGACCCTGCTTCGGCGGGGTTTTTTTATg                    <  1:18500327/35‑1 (MQ=255)
                tCACATAGACCCTGCTTCGGCGGGGGTTTTTTATg                    >  1:7217307/1‑35 (MQ=255)
                tCACATAGACCCTGCTTCGGCGGGGGTTTTTTATg                    >  1:9741248/1‑35 (MQ=255)
                 cacaTAGACCCTGCTTCGGCGGGGTTTTTTTATgg                   <  1:2246910/35‑1 (MQ=255)
                 cacaTAGACCCTGCTTCGGCGGGGTTTTTTTATgg                   <  1:17634604/35‑1 (MQ=255)
                 aaccagttgttgcgtaaGGCGGGGTTTTtttacgg                   <  1:12388186‑M1/18‑4 (MQ=255)
                  acaTAGACCCTGCTTCGGCGGGGTTTTTTTATggg                  <  1:10291870/35‑1 (MQ=255)
                  acaTAGACCCTGCTTCGGCGGGGTTTTTTTATggg                  <  1:1386699/35‑1 (MQ=255)
                    aTAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCa                <  1:13014682/35‑1 (MQ=255)
                    aTAGACCCTGCTTCGGCGGGGGTTTTTTTTTGGCa                >  1:16071287/1‑35 (MQ=18)
                    aTAGACCCTGCTTCGGCGGGGGTTTTTTTTTGGCa                >  1:18048641/1‑35 (MQ=18)
                     tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc               <  1:19211715/35‑1 (MQ=255)
                     tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc               <  1:19426065/35‑1 (MQ=255)
                     tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc               <  1:5983221/35‑1 (MQ=255)
                     tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCAc               <  1:8998668/35‑1 (MQ=255)
                     tAGACCCTGCTTCGGCGGGGGTTTTTTTTGGGCAc               >  1:4860414/1‑35 (MQ=25)
                     tAGACACTGCTTCGGCGGGGTTTTTTTATGGGCAc               <  1:13241447/35‑1 (MQ=255)
                      aGACCCTGCTTCGGCGGGGGTTTTTTATTGGGACg              >  1:15991613/1‑35 (MQ=21)
                        ccccTGCTTCGGCGGGGTTTTTTTATGGGCACGGt            <  1:247416/34‑1 (MQ=255)
                        aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGt            <  1:4888581/35‑1 (MQ=255)
                        aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGt            <  1:11407610/35‑1 (MQ=255)
                        aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGt            <  1:11921031/35‑1 (MQ=255)
                        aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGt            <  1:6663389/35‑1 (MQ=255)
                        aCCCTGCTTCGGCGGGGGTTTTTTATGGGCACggg            >  1:8027447/1‑34 (MQ=255)
                        aCCCTGCTTCGGCGGGGGTTTTTTATGGGCACggg            >  1:16968563/1‑34 (MQ=255)
                         cccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTg           <  1:1734396/35‑1 (MQ=255)
                          ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGc          <  1:7701132/35‑1 (MQ=255)
                            tGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCgg        <  1:18172816/35‑1 (MQ=255)
                             gCTTCGGCGGTGTTTTTTTATGGGCACGGTGCggg       <  1:1968444/35‑1 (MQ=255)
                               ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGt     <  1:14939372/35‑1 (MQ=255)
                               ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGt     <  1:8237601/35‑1 (MQ=255)
                                  |                                  
CTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAG  >  REL606/1286673‑1286741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.