New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 547699 | NA (NA) | 48 (0.470) | 30/48 | NT | NA | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 557127 = | NA (NA) | coding (70/282 nt) | ECB_00514 | conserved hypothetical protein |
ATACACTAAATCAGTAAGTTGGCAGCATCACCACCGAAACCATCACCATTGGCTTCAGTTACG > REL606/547668‑547730 | atACACTAAATCAGTAAGTTGGCAGCATcaccacg > 1:11365908/1‑34 (MQ=17) atACACTAAATCAGTAAGTTGGCAGCATCaccacc > 1:17445301/1‑35 (MQ=35) cacTAAATCAGTAAGTTGGCAGCATCACCACCGaa > 1:12314564/1‑35 (MQ=38) cAGTAAGTTGGCAGCATCACCACCGAAACCATCAc > 1:10370722/1‑35 (MQ=255) gcaTCACCACCGAAACCATCACCATTGGCTTCAGt > 1:3543552/1‑35 (MQ=255) caacaccGAAACCATCACAATTGGCTTCAGTTACg < 1:12604645/32‑1 (MQ=38) | ATACACTAAATCAGTAAGTTGGCAGCATCACCACCGAAACCATCACCATTGGCTTCAGTTACG > REL606/547668‑547730 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |