New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2908068 =60 (0.580)9 (0.110) 4/38 NT 14.3% coding (999/2871 nt) xdhD fused predicted xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit/Fe‑S binding subunit
?REL606 4123539 = 60 (0.740)coding (903/1080 nt) frwC predicted enzyme IIC component of PTS

TTGATGATCATATGCTCGCCGCGCTGGGCTGCATGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2908106‑2908068
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGC  >  REL606/4123539‑4123572
                                                                         
TTGATGATCATATGCTCGCCGCGCTGGGCTGCATG                                        >  1:7868205/1‑35
TTGATGATCATATGCTCGCCGCGCTGGGCTGCATG                                        >  1:8513984/1‑35
 TGATGATCATATGCTCGCCGCGCTGGGCTGCATGG                                       >  1:11383955/1‑35
  GATGATCATATGCTCGCCGCGCTGGGCTGCATGGC                                      <  1:11692403/35‑1
  GATGATCATATGCTCGCCGCGCTGGGCTGCATGGC                                      >  1:12334500/1‑35
  GATGATCATATGCTCGCCGCGCTGGGCTGCATGGC                                      >  1:12570762/1‑35
  GATGATCATATGCTCGCCGCGCTGGGCTGCATGGC                                      >  1:3839264/1‑35
  GATGATCATATGCTCGCCGCGCTGGGCTGCATGGC                                      <  1:8746658/35‑1
   ATGATCATATGCTCGCCGCGCTGGGCTGCATGGCT                                     <  1:3494428/35‑1
   ATGATCATATGCTCGCCGCGCTGGGCTGCATGGCT                                     >  1:2707754/1‑35
   ATGATCATATGCTCGCCGCGCTGGGCTGCATGGCT                                     >  1:3606244/1‑35
   ATGATCATATGCTCGCCGCGCTGGGCTGCATGGCT                                     <  1:6419519/35‑1
   ATGATCATATGCTCGCCGCGCTGGGCTGCATGGCT                                     >  1:16379276/1‑35
   ATGATCATATGCTCGCCGCGCTGGGCTGCATGGCT                                     >  1:15325778/1‑35
   ATGATCATATGCTCGCCGCGCTGGGCTGCATGGCT                                     <  1:13853856/35‑1
    TGATCATATGCTCGCCGCGCTGGGCTGCATGGCTG                                    <  1:1568331/35‑1
    TGATCATATGCTCGCCGCGCTGGGCTGCATGGCTG                                    >  1:13136438/1‑35
    TGATCATATGCTCGCCGCGCTGGGCTGCATGGCTG                                    >  1:12263865/1‑35
     GATCATATGCTCGCCGCGCTGGGCTGCATGGCTGa                                   >  1:12498851/1‑34
     GATCATATGCTCGCCGCGCTGGGCTGCATGGCTGG                                   >  1:15615705/1‑35
     GATCATATGCTCGCCGCGCTGGGCTGCATGGCTGG                                   >  1:13693438/1‑35
      ATCATATTCTCGCCGCGCTGGGCTGCATGGCTGGG                                  >  1:17598773/1‑35
      ATCATATGCTCGCCGCGCTGGGCTGCATGGCTGat                                  <  1:20152975/35‑3
       TCATATGCTCGCCGCGCTGGGCTGCATGGCTGGGG                                 >  1:15038378/1‑35
       TCATATGCTCGCCGCGCTGGGCTGCATGGCTGGGG                                 >  1:19002858/1‑35
        CATATGCTCGCCGCGCTGTGCTGCATGGCTGGGGg                                >  1:9048373/1‑34
        CATATGCTCGCCGCGCTGGGCTGCATGGCTGGGGg                                >  1:302204/1‑34
        CATATGCTCGCCGCGCTGGGCTGCATGGCTGGGGg                                >  1:4947699/1‑34
         ATATGCTCGCCGCGCTGGGCTGCATGGCTGGGGgg                               >  1:2542602/1‑33
         ATATGCTCGCCGCGCTGGGCTGCATGGCTGGGGTt                               >  1:1289339/1‑34
          TATGCTCGCCGCGCTGGGCTGCATGGCTGGGGGGG                              >  1:19978475/1‑35
          TATGCTCGCCGCGCTGGGCTGCATGGCTGGGGGGG                              >  1:6422195/1‑35
           ATGCTCGCCGCGCTGGGCTGCATGGCTGGGGTGGg                             >  1:9935356/1‑34
           ATGCTCGCCGCGCTGGGCTGCATGGCTGGGGTGGT                             >  1:6489377/1‑35
            TGCTCGCCGCGCTGGGCTGCATGGCTGGGGTGGgt                            >  1:5216672/1‑33
            TGCTCGCCGCGCTGGGCTGCATGGCTGGGGTGGgc                            >  1:20451376/1‑33
            TGCTCGCCGCGCTGGGCTGCATGGCTGGGGTGGTC                            >  1:1812695/1‑35
             GCTCGCCGCGCTGGGCTGCATGGCTGGGGTGGTCT                           >  1:6946370/1‑35
             GCTCGCCGCGCTGGGCTGCATGGCTGGGGTGGTCT                           >  1:14490603/1‑35
                                 gGGCTGGGGTGGTCTGATTGTCCTGCCGGTGGTTG       <  1:2240971/34‑1
                                  GGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGA      <  1:15945418/35‑1
                                  GGCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGA      <  1:12598617/35‑1
                                   GCTGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAA     <  1:17387565/35‑1
                                     gGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGG   <  1:5570951/34‑1
                                     TGGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGG   <  1:15681008/35‑1
                                      GGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGC  <  1:18931786/35‑1
                                      GGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGC  <  1:10688388/35‑1
                                      GGGGTGGTCTGATTGTGCTGCAGGTGGTTGAAGGC  <  1:6983810/35‑1
                                                                         
TTGATGATCATATGCTCGCCGCGCTGGGCTGCATGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2908106‑2908068
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgGGGTGGTCTGATTGTGCTGCCGGTGGTTGAAGGC  >  REL606/4123539‑4123572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.