New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1183967 | 102 (0.990) | 15 (0.150) | 4/46 | NT | 15.2% | intergenic (+43/+40) | ycfR/ycfS | hypothetical protein/hypothetical protein |
? | REL606 | = 4549416 | 69 (0.700) | coding (18/1233 nt) | yjiO | multidrug efflux system protein |
Only 100 of 203 total aligned reads displayed.
CCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTTATCC > REL606/1183933‑1184001 | ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCC < 1:14767608‑M1/35‑1 (MQ=255) ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCC < 1:7340627‑M1/35‑1 (MQ=255) ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCC < 1:12046307‑M1/35‑1 (MQ=255) ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCC > 1:13658258‑M1/1‑35 (MQ=255) ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCC > 1:11333471‑M1/1‑35 (MQ=255) ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCC > 1:11554786‑M1/1‑35 (MQ=255) cTCATTAATGCCTGCTACTGCTGATTTTTTCCCcg > 1:4315846/1‑35 (MQ=255) cTCATTAATGCCTGCTACTGCTGATTTTTTCCCcg < 1:6697576/35‑1 (MQ=255) tCATTAATGCCTGCTACTGCTGATTTTTTCCCcgc > 1:8917272/1‑35 (MQ=255) cATTAATGCCTGCTACTGCTGATTTTTTCCCcgcg > 1:16067323/1‑35 (MQ=255) cATTAATGCCTGCTACTGCTGATTTTTTCCCcgcg < 1:19341340/35‑1 (MQ=255) aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa > 1:11412573/1‑35 (MQ=255) aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa > 1:4052721/1‑35 (MQ=255) aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa < 1:20216820/35‑1 (MQ=255) aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa < 1:17557394/35‑1 (MQ=255) aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa > 1:12844435/1‑35 (MQ=255) aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa > 1:4698557/1‑35 (MQ=255) aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGa > 1:13059261/1‑35 (MQ=255) cttGCCTGCTACTGCTGATTTTTTCCCCGCGACAt < 1:1094536/33‑1 (MQ=255) aaTGCCTTCTACTGCTGATTTTTTCCCCGCGACAt > 1:10616495/1‑35 (MQ=255) aaTGCCTGCTACTGCTGATTTTTTCCCCGCGACAt < 1:12502431/35‑1 (MQ=255) aTGCCTGCTACTGCTGATTTTTTCCCCGCGACATg > 1:18396515/1‑35 (MQ=255) aTGCCTGCTACTGCTGATTTTTTCCCCGCGACATg > 1:16223962/1‑35 (MQ=255) aTGCCTGCTACTGCTGATTTTTTCCCCGCGACATg > 1:17915695/1‑35 (MQ=255) aTGCCTGCTACTGCTGATTTTTTCCCCGCGACATg > 1:20310318/1‑35 (MQ=255) aTGCCTGCTACTGCTGATTTTTTCCCCGCGACATg > 1:8143206/1‑35 (MQ=255) tGCCTGCTACTGCTGATTTTTTCCCCGCGACATgt > 1:610112/1‑34 (MQ=255) tGCCTGCTACTGCTGATTTTTTCCCCGCGACATGc > 1:5221859/1‑35 (MQ=255) gCCTGCTACTGCTGATTTTTTCCCCGCGACATGcc > 1:12936356/1‑35 (MQ=255) gCCTGCTACTGCTGATTTTTTCCCCGCGACATGcc > 1:15106461/1‑35 (MQ=255) gCCTGCTACTGCTGATTTTTTCCCCGCGACATGcc > 1:5928928/1‑35 (MQ=255) ccTGCTGCTGCTGATTTTTTCCCCGCGACATGCCg < 1:10520623/35‑1 (MQ=255) ccTGCTCCTGCTGATTTTTTCCCCGCGGCATGCCg < 1:11908426/35‑1 (MQ=25) ccTGCTACTGCTGATTTTTTCCCCGCGACATGCCg < 1:2634792/35‑1 (MQ=255) cTGCTACTGCTGATTTTTTCCCCGCGACATGCCgt > 1:463084/1‑35 (MQ=255) cTGCTACTGCTGATTTTTTCCCCGCGACATGCCgt < 1:14271910/35‑1 (MQ=255) atGCTACTGCTGATTTTTTCCCCGCGACATGCCgt < 1:16647741/34‑1 (MQ=255) tGCTCCTGCTGATTTTTTCCCCGCGACATGCCgtg < 1:7039717/35‑1 (MQ=255) tGCTACTGCTGATTTTTTCCCCGCGACATGCCgtg > 1:71067/1‑35 (MQ=255) tGCTACTGCTGATTTTTTCCCCGCGACATGCCgtg > 1:10724104/1‑35 (MQ=255) gCTACTGCTGATTTTTTCCCCGCGACATGCCgtgt > 1:13016329/1‑35 (MQ=255) gCTACTGCTGATTTTTTCCCCGCGACATGCCgtgt > 1:19405516/1‑35 (MQ=255) cTACTGCTGATTTTTTCCCCGCGACATGCCGTGTc > 1:13382765/1‑35 (MQ=255) cTACTGCTGATTTTTTCCCCGCGACATGCCGTGTc < 1:16534727/35‑1 (MQ=255) cTACTGCTGATTTTTTCCCCGCGACATGCCGTGTc > 1:11845364/1‑35 (MQ=255) tACTGCTGATTTTTTCCCCGCGACATGCCGTGTcg < 1:19917232/35‑1 (MQ=255) tACTGCTGATTTTTTCCCCGCGACATGCCGTGTcg > 1:19596899/1‑35 (MQ=255) aCTGCTGATTTTTTCCCCGCGACATGCCGTGTcgc < 1:14480772/35‑1 (MQ=255) aCTGCTGATTTTTTCCCCGCGACATGCCGTGTcgc < 1:18709447/35‑1 (MQ=255) aCTGCTGATTTTTTCCCCGCGACATGCCGTGTcgc > 1:9134258/1‑35 (MQ=255) tgctgATTTTTTCCCCGCGACATGCCGTGTCGCgg < 1:16851965/35‑1 (MQ=255) tgctgATTTTTTCCCCGCGACATGCCGTGTCGCgg < 1:19721147/35‑1 (MQ=255) tgctgATTTTTTCCCCGCGACATGCCGTGTCGCgg > 1:13240811/1‑35 (MQ=255) gctgATTTTTTCCCCGCGACATGCCGTGTCGCggg < 1:3205726/35‑1 (MQ=255) gctgATTTTTTCCCCGCGACATGCCGTGTCGCggg < 1:20093965/35‑1 (MQ=255) gctgATTTTTTCCCCGCGACATGCCGTGTCGCggg > 1:660252/1‑35 (MQ=255) gctgATTTTTTCCCCGCGACATGCCGTGTCGCggg > 1:8543954/1‑35 (MQ=255) gctgATTTTTTCCCCGCGACATGCCGTGTCGCggg < 1:18329868/35‑1 (MQ=255) gctgATTTTTTCCCCGCGACATGCCGTGTCGCggg < 1:17754032/35‑1 (MQ=255) ctgATTTTTTCCCCGCGACATGCCGTGTCGCgggg < 1:8272395/35‑1 (MQ=255) tttttttttcccCccgccatgccgccacgctgttt < 1:12292925‑M1/32‑23 (MQ=255) tgATTTTTTCCCCGCGACATGCCGTGTCGCGGGGa > 1:5986219/1‑35 (MQ=255) gATTTTTTCCCCGCGACATGCCGTGTCGCggggct > 1:17994850/1‑33 (MQ=255) gATTTTTTCCCCGCGACATGCCGTGTCGCGGGGAt > 1:13955178/1‑35 (MQ=255) aTTTTTTCCCCGCGACATGCCGTGTCGCGGGGGtt > 1:12078810/1‑35 (MQ=255) ttttttTCCCccgccatgccgccacgctgtttttc < 1:15658226‑M1/35‑26 (MQ=255) ttttttTCCCccgccatgccgccacgctgtttttc < 1:6746825‑M1/35‑26 (MQ=255) ttttttCCCCGCGACATGCCGTGTCGCGGGGAttt < 1:13279050/35‑1 (MQ=255) tttttcCCCCccgacatgccctgatttacccattc < 1:19795009‑M1/35‑26 (MQ=255) tttttcCCCCccgacatgccctgatttacccattc < 1:15703514‑M1/35‑26 (MQ=255) tttttcCCCCccgacatgccctgatttacccattc < 1:7897060‑M1/35‑26 (MQ=255) atttttcCCCccgacatgccctgatttacccattc < 1:17617533‑M1/34‑26 (MQ=255) tttttCCCCccgccatgccgccacgctgtttttcc < 1:2945115‑M1/35‑27 (MQ=255) tttttCCCCGCGACATGCCGTGTCGCGGGGAtttt > 1:3577953/1‑35 (MQ=255) ttttcCCCCccgacatgccctgatttacccattcc < 1:9064727‑M1/35‑27 (MQ=255) ttttcCCCCccgacatgccctgatttacccattcc < 1:15009878‑M1/35‑27 (MQ=255) cttttCCCCGCGACATGCCGTGTCGCGGGGAtttt < 1:5101433/34‑1 (MQ=255) ttttTCCCccgccatgccgccacgctgtttttccc < 1:16185623‑M1/35‑28 (MQ=255) ttttTCCCccgccatgccgccacgctgtttttccc < 1:18549360‑M1/35‑28 (MQ=255) ttttCCCCccgccatgccgccacgctgtttttccc < 1:4589606‑M1/35‑28 (MQ=255) tttTCCCccgccatgccgccacgctgtttttcccg < 1:12370689‑M1/35‑29 (MQ=255) ttcccccccgacatgccctgatttacccattcctg < 1:13560055‑M1/32‑29 (MQ=255) tttcccccgccatgccgccacgctgtttttcccga < 1:9421530‑M1/32‑30 (MQ=255) tttcccccgccatgccgccacgctgtttttcccga < 1:7759203‑M1/32‑30 (MQ=255) ttCCCCGCGACATGCCGTGTCGCGGGGAttttttt > 1:5667054/1‑35 (MQ=255) ttCCCCGCGACATGCCGTGTCGCGGGGAttttttt < 1:17384314/35‑1 (MQ=255) ttCCCCGCGACATGCCGTGTCGCGGGGAttttttt < 1:204160/35‑1 (MQ=255) ttCCCAGCGACATGCCGTGTCGCGGGGAttttttt < 1:20491693/35‑1 (MQ=255) cccccccgacatgccctgatttacccattcctgaa < 1:14659518‑M1/34‑31 (MQ=255) ccccGCGACATGCCGTGTCGCGGGGAttttttttt > 1:16954309/1‑34 (MQ=255) cccGCGACATGCCGTGTCGCGGGGATTTTTTTTAt > 1:9488232/1‑35 (MQ=255) ccccgccatgccgccacgctgtttttcccgatggc < 1:8090966‑M1/35‑34 (MQ=255) ccccgacatgccctgatttacccattcctgaaaga < 1:1125036‑M1/35‑34 (MQ=255) ccGCGACATGCCGTGTCGCGGGGATTTTTTTTATc < 1:4556990/35‑1 (MQ=255) ccGCGACATGCCGTGTCGCGGGGATTTTTTTTATc < 1:1702976/35‑1 (MQ=255) ccGCGACATGCCGTGTCGCGGGGATTTTTTTTATc < 1:2096162/35‑1 (MQ=255) ccGCGACATGCCGTGTCGCGGGGATTTTTTTTATc > 1:1985951/1‑35 (MQ=255) cgcgACATGCCGTGTCGCGGGGATTTTTTTTATcc < 1:13806553/35‑1 (MQ=255) cgcgACATGCCGTGTCGCGGGGATTTTTTTTATcc > 1:15382055/1‑35 (MQ=255) cccgccatgccgccacgctgtttttcccgatggcg > 1:14222808‑M1/1‑1 (MQ=255) | CCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTTATCC > REL606/1183933‑1184001 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |