New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 278928365 (0.630)8 (0.080) 4/46 NT 11.2% coding (192/1278 nt) yqcE predicted transporter
?REL606 3161174 = 67 (0.650)coding (557/1071 nt) ygjJ hypothetical protein

Only 100 of 117 total aligned reads displayed.

CCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCA  >  REL606/2789249‑2789317
                                  |                                  
ccTTTGGTATTGCGGCCATTATTCTTTATGccccc                                    <  1:4890412/35‑1 (MQ=255)
ccTTTGGTATTGCGGCCATTATTCTTTATAccccc                                    <  1:4803748/35‑1 (MQ=255)
 cTTTGGTATTGCGGCCATTATTTTTTATGCCCCCa                                   >  1:11249136/1‑35 (MQ=255)
 cTTTGGTATTGCGGCCATTATTCTTTATGCCCCCa                                   <  1:12121834/35‑1 (MQ=255)
  tttGGTATTGCGGCCATTATTCTTTATGCCCCCAg                                  <  1:3278205/35‑1 (MQ=255)
  tttGGTATTGCGGCCATTATTCTTTATGCCCCCAg                                  <  1:290384/35‑1 (MQ=255)
  tttGGTATTGCGGCCATTATTCTTTATGCCCCCAg                                  <  1:15546900/35‑1 (MQ=255)
   ttGGTATTGCGGCCATTATTCTTTATGCCCCCAgc                                 <  1:17078018/35‑1 (MQ=255)
   ttGGTATTGCGGCCATTATTCTTTATGCCCCCAgc                                 <  1:2351771/35‑1 (MQ=255)
     ggTATGGCGGCCATTATTCTTTATGCCCCCAgcgg                               <  1:351247/35‑1 (MQ=255)
      ggaTTGCGGCCATTATTCTTTATGCCCCCAgcggc                              <  1:1590188/33‑1 (MQ=255)
       tATTGCGGCCATTATTCTTTATGCCCCCAgcggcg                             <  1:5356072/35‑1 (MQ=255)
        aTTGCGGCCATTATTCTTTATGCCCCCAGCGGCGt                            <  1:5268186/35‑1 (MQ=255)
         ttGCGGCCATTATTCTTTATGCCCCCAGCGGCGtt                           <  1:15046332/35‑1 (MQ=255)
          tGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTa                          <  1:13757421/35‑1 (MQ=255)
           gCGGCCATTATTCTTTATGCCACCAGCGGCGTTAt                         <  1:9599313/35‑1 (MQ=255)
            cGGCCATTATTCTTTATGCCCCCAGCGGCGTTAtt                        <  1:10697180/35‑1 (MQ=255)
             ggCCATTATTCTTTATGCCCCCAGCGGCGTTATTg                       >  1:17483211/1‑35 (MQ=255)
             ggCCATTATTCTTTATGCCCCCAGCGGCGTTATTg                       >  1:13259273/1‑35 (MQ=255)
             ggCCATTATTCTTTATGCCCCCAGCGGCGTTATTg                       <  1:19954157/35‑1 (MQ=255)
              gCCATTATTCTTTATGCCCCCAGCGGCGTTATTGc                      >  1:15227184/1‑35 (MQ=255)
               ccATTATTCTTTATGCCCCCAGCGGCGTTATTGcc                     <  1:1351720/35‑1 (MQ=255)
               ccATTATTCTTTATGCCCCCAGCGGCGTTATTGcc                     >  1:16546700/1‑35 (MQ=255)
               ccATTATTCTTTATGCCCCCAGCGGCGTTATTGcc                     <  1:4029759/35‑1 (MQ=255)
                cATTATTCTTTATGCCCCCAGCGGAGTTATTGCCg                    <  1:11834924/35‑1 (MQ=255)
                cATTATTCTTTATGCCCCCAGCGGAGTTATTGCCg                    <  1:14156407/35‑1 (MQ=255)
                 attattCTTTATGCCCCCAGCGGCGTTATTGCCGa                   >  1:7554191/1‑35 (MQ=255)
                 attattCTTTATGCCCCCAGCGGCGTTATTGCCGa                   >  1:272945/1‑35 (MQ=255)
                  ttattCTTTATGCCCCCAGCGGCGTTATTGCCGAt                  <  1:12815815/35‑1 (MQ=255)
                  ttattCTTTATGCCCCCAGCGGCGTTATTGCCGAt                  >  1:18233310/1‑35 (MQ=255)
                   tattCTTTATGCCCCCAGCGGCGTTATTGCCGATa                 >  1:1518185/1‑35 (MQ=255)
                   tattCTTTATGCCCCCAGCGGCGTTATTGCCGATa                 <  1:6467861/35‑1 (MQ=255)
                   tattCTTTATGCCCCCAGCGGCGTTATTGCCGATa                 >  1:9643448/1‑35 (MQ=255)
                    attCTTTATGCCCCCAGCGGCGTTATTGCCGATaa                <  1:15535052/35‑1 (MQ=255)
                     ttCTTTATGCCCCCcccgcgactcctgccggacat               <  1:6737546‑M1/35‑22 (MQ=255)
                     ttCTTTATGCCCCCAGCGGCGTTATTGCCGATaaa               <  1:10059518/35‑1 (MQ=255)
                     ttCTTTATGCCCCCAGCGGCGTTATTGCCGATaaa               <  1:17311819/35‑1 (MQ=255)
                     ttCTTTATGCCCCCAGCGGCGTTATTGCCGATaaa               >  1:338980/1‑35 (MQ=255)
                     ttCTTTATGCCCCCAGCGGCGTTATTGCCGATaaa               <  1:12458702/35‑1 (MQ=255)
                     ttCTTTATGCCCCCAGCGGCGTTATTGCCGATaaa               <  1:11769446/35‑1 (MQ=255)
                      tCTTTATGCCCCCAGCGGCGTTATTGCCGATAAAt              <  1:17496553/35‑1 (MQ=255)
                       cTTTATGCCCCCAGCGGCGTTATTGCCGATAAAtt             <  1:17016241/35‑1 (MQ=255)
                       cTTTATGCCCCCAGCGGCGTTATTGCCGATAAAtt             >  1:1660465/1‑35 (MQ=255)
                       cTTTATGCCCCCAGCGGCGTTATTGCCGATAAAtt             >  1:13418688/1‑35 (MQ=255)
                        tttATGCCCCCAGCGGCGTTATTGCCGATAAAttt            >  1:12672003/1‑35 (MQ=255)
                        tttATGCCCCCAGCGGCGTTATTGCCGATAAAttt            <  1:18982827/35‑1 (MQ=255)
                         ttATGCCCCCAGCGGCGTTATTGCCGATAAAtttt           >  1:8641825/1‑35 (MQ=255)
                         ttATGCCCCCAGCGGCGTTATTGCCGATAAAtttt           >  1:1058734/1‑35 (MQ=255)
                         ttATGCCCCCAGCGGCGTTATTGCCGATAAAtttt           >  1:3373350/1‑35 (MQ=255)
                         ttATCCCCCCcccgcgactcctgccggacatcatg           <  1:13670509‑M1/35‑26 (MQ=255)
                         ttAAGCCCCCcccgcgactcctgccggacatcatg           <  1:5515565‑M1/35‑26 (MQ=255)
                          tATGCCCCCAGCGGCGTTATTGCCGATAAATTTTc          >  1:2160004/1‑35 (MQ=255)
                          tATGCCCCCAGCGGCGTTATTGCCGATAAATTTTc          >  1:6727885/1‑35 (MQ=255)
                          tATGCCCCCAGCGGCGTTATTGCCGATAAATTTTc          <  1:12373771/35‑1 (MQ=255)
                          tATGCCCCCAGCGGCGTTATTGCCGATAAATTTTc          <  1:8011618/35‑1 (MQ=255)
                           cacccccccccgcgactcctgccggacatcatgat         <  1:20557883‑M1/32‑28 (MQ=255)
                           ataccccccccgcgactcctgccggacatcatgat         <  1:4630988‑M1/32‑28 (MQ=255)
                           aggccCCCcccgcgactcctgccggacatcatgat         <  1:11410107‑M1/33‑28 (MQ=255)
                           aTGCCCCCAGCGGCGTTATTGCCGATAAATTTTca         >  1:14737560/1‑35 (MQ=255)
                           aTGCCCCCAGCGGCGTTATTGCCGATAAATTTTca         <  1:10408340/35‑1 (MQ=255)
                            tcgcccccccgcgactcctgccggacatcatgatg        <  1:1979009‑M1/32‑29 (MQ=255)
                            tGCCGCCcccgcgactcctgccggacatcatgatg        <  1:17579034‑M1/35‑29 (MQ=255)
                            tGCCCCCAGCGGCGTTATTGCCGATAAATTTTcac        <  1:14510866/35‑1 (MQ=255)
                            tGCCCCCAGCGGCGTTATTGCCGATAAATTTTcac        <  1:17051655/35‑1 (MQ=255)
                            tGCCCCCAGCGGCGTTATTGCCGATAAATTTTcac        <  1:17252585/35‑1 (MQ=255)
                            ggcCCCCcccgcgactcctgccggacatcatgatg        <  1:5549364‑M1/34‑29 (MQ=255)
                            gaccccccccgcgactcctgccggacatcatgatg        <  1:615801‑M1/33‑29 (MQ=255)
                            agcCCCCcccgcgactcctgccggacatcatgatg        <  1:14343630‑M1/34‑29 (MQ=255)
                             gCCCCCAGCGGCGTTATTGCCGATAAATTTTcaca       >  1:14482321/1‑35 (MQ=255)
                             gCCCCCAGCGGCGTTATTGCCGATAAATTTTcaca       <  1:3704295/35‑1 (MQ=255)
                             gCCCCCAGCGGCGTTATTGCCGATAAATTTTcaca       >  1:20175894/1‑35 (MQ=255)
                             gCCCCCAGCGGCGTTATTGCCGATAAATTTTcaca       >  1:19834092/1‑35 (MQ=255)
                             cccccccccgcgactcctgccggacatcatgatga       <  1:14643040‑M1/34‑30 (MQ=255)
                              gcccccccgcgactcctgccggacatcatgatgaa      <  1:11617578‑M1/34‑31 (MQ=255)
                              cccccAGCGGCGTTATTGCCGATAAATTTTCacac      <  1:6697786/35‑1 (MQ=255)
                              cccccAGCGGCGTTATTGCCGATAAATTTTCacac      <  1:3157964/35‑1 (MQ=255)
                              cccccAGCGGCGTTATTGCCGATAAATTTTCacac      <  1:15082851/35‑1 (MQ=255)
                              cccccAGCGGCGTTATTGCCGATAAATTTTCacac      >  1:15853365/1‑35 (MQ=255)
                              cccccAGCGGCGTTATTGCCGATAAATTTTCacac      >  1:1037659/1‑35 (MQ=255)
                               cccccccgcgactcctgccggacatcatgatgaaa     <  1:3216391‑M1/35‑32 (MQ=255)
                               cccccccgcgactcctgccggacatcatgatgaaa     <  1:13754472‑M1/35‑32 (MQ=255)
                               cccccccgcgactactgccggacatcatgatgaaa     <  1:6008348‑M1/35‑32 (MQ=255)
                               ccccAGCGGCGTTATTGCCGATAAATTTTCACAcc     >  1:11561508/1‑35 (MQ=255)
                               ccccAGCGGCGTTATTGCCGATAAATTTTCACAcc     <  1:5150374/35‑1 (MQ=255)
                               ccccAGCGGCGTTATTGCCGATAAATTTTCACAcc     >  1:9038566/1‑35 (MQ=255)
                                gcccccgcgactcctgccggacatcatgatgaaag    <  1:5680410‑M1/34‑33 (MQ=255)
                                cccAGCGGCGTTATTTCCGATAAATTTTCACACCg    >  1:2678075/1‑35 (MQ=255)
                                cccAGCGGCGTTATTGCCGATAAATTTTCACACCg    <  1:9262467/35‑1 (MQ=255)
                                cccAGCGGCGTTATTGCCGATAAATTTTCACACCg    >  1:13009374/1‑35 (MQ=255)
                                cccAGCGGCGTTATTGCCGATAAATTTTCACACCg    <  1:9773571/35‑1 (MQ=255)
                                cccAGCGGCGTTATTGCCGATAAATTTTCACACCg    <  1:14427490/35‑1 (MQ=255)
                                cccAGCGGCGTTATTGCCGATAAATTTTCACACCg    <  1:599344/35‑1 (MQ=255)
                                accAGCGGCGTTATTGCCGATAAATTTTGACACCg    <  1:17133990/34‑1 (MQ=255)
                                 tcAGCGGCGTTATTGCCGATAAATTTTCACACCGc   >  1:15144852/2‑35 (MQ=255)
                                 cccccgcgactcctgccggacatcatgatgaaagc   <  1:3766337‑M1/35‑34 (MQ=255)
                                 ccAGCGGCGTTATTGCCGATAAATTTTCACACCGc   >  1:7423760/1‑35 (MQ=255)
                                  ccccgcgactcctgccggacatcatgatgaaagca  <  1:10811081‑M1/35‑35 (MQ=255)
                                  ccccgcgactcctgccggacatcatgatgaaagca  <  1:17648253‑M1/35‑35 (MQ=255)
                                  cAGCGGCGTTATTGCCGATAAATTTTCACACCGCa  >  1:19985343/1‑35 (MQ=255)
                                  cAGCGGCGTTATTGCCGATAAATTTTCACACCGCa  <  1:4694260/35‑1 (MQ=255)
                                  |                                  
CCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCA  >  REL606/2789249‑2789317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.