New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 489053 =105 (1.020)9 (0.100) 5/42 NT 12.3% coding (303/780 nt) ybbM predicted inner membrane protein
?REL606 3821518 = 37 (0.410)coding (910/1323 nt) glvG predicted 6‑phospho‑beta‑glucosidase

TTCCAGCTTGCCCGCCGCTGAATTTCCTGCCGCCGTAATGGCGCGGCAAGCATCGAAAACCTGTTTC  >  REL606/3821486‑3821552
                                |                                  
ttCCAGCTTGCCCGCCGCTGAATTTCCTGccgccg                                  >  1:15236285/1‑35 (MQ=255)
ttCCAGCTTGCCCGCCGCTGAATTTCCTGccgccg                                  >  1:16356149/1‑35 (MQ=255)
ttCCAGCTTGCCCGCCGCTGAATTTCCTGccgccg                                  >  1:5616150/1‑35 (MQ=255)
 tCCAGCTTGCCCGCCGCTGAATTTCCTGCCGCCGt                                 >  1:7719115/1‑35 (MQ=255)
  ccAGCTTGCCCGCCGCTGAATTTCCTGCCGCCGTa                                >  1:668882/1‑35 (MQ=255)
  ccAGCTTGCCCGCCGCTGAATTTCCTGCCGCCGTa                                >  1:19879993/1‑35 (MQ=255)
     gCTTGCCCGCCGCTGAATTTCCTGCCGCCGTAATg                             >  1:6316611/1‑35 (MQ=255)
     gCTTGCCCGCCGCTGAATTTCCTGCCGCCGTAATg                             >  1:2706273/1‑35 (MQ=255)
      cTTGCCCGCCGCTGAATTTCCTGCCGCCGTAATgg                            >  1:9093535/1‑35 (MQ=255)
      cTTGCCCGCCGCTGAATTTCCTGCCGCCGTAATgg                            >  1:645605/1‑35 (MQ=255)
      cTTGCCCGCCGCTGAATTTCCTGCCGCCGTAATgg                            >  1:2832241/1‑35 (MQ=255)
       ttGCCCGCCGCTGAATTTCCTGCCGCCGTAATGgc                           >  1:10596382/1‑35 (MQ=255)
       ttGCCCGCCGCTGAATTTCCTGCCGCCGTAATGgc                           >  1:12075110/1‑35 (MQ=255)
       ttGCCCGCCGCTGAATTTCCTGCCGCCGTAATGgc                           >  1:376270/1‑35 (MQ=255)
       ttGCCCGCCGCTGAATTTCCTGCCGCCGTAATGgc                           >  1:15578731/1‑35 (MQ=255)
         gCCCGCCGCTGAATTTCCTGCCGCCGTAATGgcgc                         >  1:7738938/1‑35 (MQ=255)
         gCCCGCCGCTGAATTTCCTGCCGCCGTAATGgcgc                         >  1:15131051/1‑35 (MQ=255)
         gCCCGCCGCTGAATTTCCTGCCGCCGTAATCgcgc                         >  1:15910579/1‑35 (MQ=255)
          cccGCCGCTGAATTTCCTGCCGCCGTAATGGcgcg                        >  1:9302295/1‑35 (MQ=255)
            cgccgcTGAATTTCCTGCCGCCGTAATGGCGCggg                      >  1:5952503/1‑34 (MQ=255)
            cgccgcTGAATTTCCTGCCGCCGTAATGGCGCGGc                      >  1:20494898/1‑35 (MQ=255)
            cgccgcTGAATTTCCTGCCGCCGTAATGGCGCGGc                      >  1:20540922/1‑35 (MQ=255)
            cgccgcTGAATTTCCTGCCGCCGTAATGGCGCGGc                      >  1:781569/1‑35 (MQ=255)
            cgccgcTGAATTTCCTGCCGCCGTAATGGCGCGGc                      >  1:433320/1‑35 (MQ=255)
             gccgcTGAATTTCCTGCCGCCGTAATGGCGCgggc                     >  1:2736927/1‑33 (MQ=255)
             gccgcTGAATTTCCTGCCGCCGTAATGGCGCGGCa                     >  1:1534045/1‑35 (MQ=255)
             gccgcTGAATTTCCTGCCGCCGTAATGGCGCGGCa                     >  1:3997148/1‑35 (MQ=255)
              ccgcTGATTTCCCCCCCGCCGTAATGGCGCGGCaa                    <  1:14386235/35‑1 (MQ=16)
              ccgcTGAATTTCCTGCCGCCGTAATGGCGCGGcca                    >  1:8017091/1‑33 (MQ=255)
              ccgcTGAATTTCCTGCCGCCGTAATGGCGCGGCaa                    >  1:6734780/1‑35 (MQ=255)
                 cTGAATTTCCTGCCGCCGTAATGGCGCGGGAAGCa                 >  1:3331200/1‑35 (MQ=255)
                 cTGAATTTCCTGCCGCCGTAATGGCGCGGCAAGCa                 >  1:19342660/1‑35 (MQ=255)
                  taattccccccccgCCGTAATGGCGCGGCAAGCAt                <  1:3095416‑M2/21‑1 (MQ=255)
                  tGAATTTCCTGCCGCCGTAATGGCGCGGCAAGCAt                >  1:2639635/1‑35 (MQ=255)
                   gattccccccccgCCGTAATGGCGCGGCAAGCATc               <  1:13237232‑M2/22‑1 (MQ=255)
                   gAATTTCCTGCCGCCGTAATGGCGCGGGGAGCATc               >  1:17486661/1‑35 (MQ=38)
                   gAATTTCCTGCCGCCGTAATGGCGCGGCAAGCATc               >  1:16370452/1‑35 (MQ=255)
                   aattccccccccgCCGTAATGGCGCGGCAAGCATc               <  1:12169796‑M2/22‑1 (MQ=255)
                   aattccccccccgCCGTAATGGCGCGGCAAGCATc               <  1:20547457‑M2/22‑1 (MQ=255)
                   aattccccccccgCCGTAATGGCGCGGCAAGCATc               <  1:13248822‑M2/22‑1 (MQ=255)
                    attccccccccgCCGTAATGGCGCGGCAAGCATCg              <  1:1455997‑M2/23‑1 (MQ=255)
                    aaTTTCCTGCCGCCGTAATGGCGCGGCAAGCATCg              >  1:13055963/1‑35 (MQ=255)
                     aTTTCCTGCCGCCGTAATGGCGCGGCAAGCATCGa             >  1:15630940/1‑35 (MQ=255)
                      tttCCTGCCGCCGTAATGGCGCGGCAAGCATCGaa            >  1:19233045/1‑35 (MQ=255)
                      tttCCTGCCGCCGTAATGGCGCGGCAAGCATCGaa            >  1:3700368/1‑35 (MQ=255)
                      tttCCTGCCGCCGTAATGGCGCGGCAAGCATCGaa            >  1:5042054/1‑35 (MQ=255)
                      tttCCTGCCGCCGTAATGGCGCGGCAAGCATCGaa            >  1:11687842/1‑35 (MQ=255)
                      tttCCTGCCGCCGTAATGGCGCGGCAAGCATCGaa            >  1:1099622/1‑35 (MQ=255)
                      tccccccccgCCGTAATGGCGCGGCAAGCATCGaa            <  1:7494670‑M2/25‑1 (MQ=255)
                      tccccccccgCCGTAATGGCGCGGCAAGCATCGaa            <  1:7860572‑M2/25‑1 (MQ=255)
                       ttCCTGCCGCCGTAATGGCGCGGCAAGCATCGaaa           >  1:13394661/1‑35 (MQ=255)
                       ccccccccgCCGTAATGGCGCGGCAAGCATCGaaa           <  1:10013434‑M2/26‑1 (MQ=255)
                        tCCTGCCGCCGTAATGGCGCGGCAAGCATCGaaaa          >  1:2299378/1‑35 (MQ=255)
                        cccccccgCCGTAATGGCGCGGCAAGCATCGaaaa          <  1:20534220‑M2/27‑1 (MQ=255)
                        cccTCCCGCCGTAATGGCGCGGCAAGCATCGaaaa          <  1:23528/34‑1 (MQ=255)
                         ccggccgccGTAATGGCGCGGCAAGCATCGAAAAc         <  1:2000440/32‑1 (MQ=255)
                         cccgccgccGTAATGGCGCGGCAAGCATCGAAAAc         <  1:8167575/32‑1 (MQ=255)
                         ccccccgCCGTAATGGCGCGGCAAGCATCGAAAAc         <  1:10213543‑M2/28‑1 (MQ=255)
                         ccTGCCGCCGTAATGGCGCGGCAAGCATCGAAAAc         >  1:8505165/1‑35 (MQ=255)
                         ccTGCCGCCGTAATGGCGCGGCAAGCATCGAAAAc         >  1:1692311/1‑35 (MQ=255)
                          cTGCCGCCGTAATGGCGCGGCAAGCATCGAAAAcc        >  1:14764207/1‑35 (MQ=255)
                           tGCCGCCGTAATGGCGCGGCAAGCATCGGAAAACt       >  1:17811058/1‑35 (MQ=37)
                           tGCCGCCGTAATGGCGCGGCAAGCATCGAAAACCt       >  1:8709191/1‑35 (MQ=255)
                           ccccgCGGTAATGGCGCGGCAAGCATCGAAAACCt       <  1:31212‑M2/30‑1 (MQ=255)
                           ccccgCCGTAATGGCGCGGCAAGCATCGAAAACCt       <  1:16937886‑M2/30‑1 (MQ=255)
                            cccgCCGTAATGGCGCGGCAAGCATCGAAAACCTg      <  1:13773897‑M2/31‑1 (MQ=255)
                            cccgCCGTAATGGCGCGGCAAGCATCGAAAACCTg      <  1:13874827‑M2/31‑1 (MQ=255)
                             ccgCCGTAATGGCGCGGCAAGCATCGAAAACCTGt     <  1:973767‑M2/32‑1 (MQ=255)
                             ccgCCGTAATGGCGCGGCAAGCATCGAAAACCTGt     >  1:19955703‑M2/4‑35 (MQ=255)
                             ccgCCGTAATGGCGCGGCAAGCATCGAAAACCTGt     <  1:10315180‑M2/32‑1 (MQ=255)
                             ccgCCGTAATGGCGCGGCAAGCATCGAAAACCTGt     <  1:11829027‑M2/32‑1 (MQ=255)
                             ccgCCGTAATGGCGCGGCAAGCATCGAAAACCTGt     <  1:13990610‑M2/32‑1 (MQ=255)
                             ccgCCGTAATGGCGCGGCAAGCATCGAAAACCTGt     <  1:16862658‑M2/32‑1 (MQ=255)
                             ccgCCGTAATGGCGCGGCAAGCATCGAAAAACTGt     <  1:17421930‑M2/32‑1 (MQ=255)
                             ccgCCATAATGGCGCGGCAAGCATCGAAAACCTGt     <  1:15458846‑M2/32‑1 (MQ=255)
                              cgCCGTAATGGCGCGGGAAGCATCGAAAACCTGtt    <  1:874617‑M2/33‑1 (MQ=255)
                              cgCCGTAATGGCGCGGCAAGCATCGAAAACCTGtt    <  1:3615632‑M2/33‑1 (MQ=255)
                              cgCCGTAATGGCGCGGCAAGCATCGAAAACCTGtt    >  1:4189194‑M2/3‑35 (MQ=255)
                              cgCCGTAATGGCGCGGCAAGCATCGAAAACCTGtt    >  1:4280988‑M2/3‑35 (MQ=255)
                              cgCCGTAATGGCGCGGCAAGCATCGAAAACCTGtt    <  1:10611718‑M2/33‑1 (MQ=255)
                               gCCTTAATGGCGCGGCAAGCATCGAAAACCTGttt   >  1:17753476‑M2/2‑35 (MQ=255)
                               gCCGTAATGGCGCGGCAAGCATCGAAAACCTGttt   <  1:19344116‑M2/34‑1 (MQ=255)
                               gCCGTAATGGCGCGGCAAGCATCGAAAACCTGttt   >  1:18341404‑M2/2‑35 (MQ=255)
                                ccgTAATGGCGCGGCGAGCATCGAAAACCTGTTtc  >  1:7880661/1‑35 (MQ=255)
                                ccgTAATGGCGCGGCAAGCATCGAAAACCTGTTtc  <  1:7954993/35‑1 (MQ=255)
                                ccgTAATGGCGCGGCAAGCATCGAAAACCTGTTtc  >  1:10403181/1‑35 (MQ=255)
                                ccgTAATGGCGCGGCAAGCATCGAAAACCTGTTtc  >  1:17743892/1‑35 (MQ=255)
                                ccgTAATGGCGCGGCAAGCATCGAAAACCTGTTtc  <  1:10941106/35‑1 (MQ=255)
                                ccgTAATGGCGCGGCAAGCATCGAAAACCTGTTtc  <  1:7656516/35‑1 (MQ=255)
                                ccgTAATGGCGCGGAAAGCATCGAAAACCTGTTtc  <  1:566307/35‑1 (MQ=255)
                                |                                  
TTCCAGCTTGCCCGCCGCTGAATTTCCTGCCGCCGTAATGGCGCGGCAAGCATCGAAAACCTGTTTC  >  REL606/3821486‑3821552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.