Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,827,928 | 1 | .→T | 1.1% | 1.7 0.0 ‑0.0 | 183 | intergenic (‑145/‑161) | ibpA/yidQ | heat shock chaperone/conserved outer membrane protein |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Rejected: Polymorphic indel expands or contracts a homopolymer stretch. | ||||||||||
Reads supporting (aligned to +/- strand): new base (1/1): ref base (93/88): total (94/89) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.10e-01 |
Only 100 of 243 total aligned reads displayed.
TCTGGAAATGAACTTTTCAAGCCTTATCAGCGGACTTTTTTTTGCAGTTTATGGTCTATTGCATAGACT > REL606/3827894‑3827962 tCTGGAAATGAACTTTTCAAGCCTTATCAGGGGAc < 1:9487563/35‑1 (MQ=255) tCTGGAAATGAACTTTTCAAGCCTTATCAGCGGAc > 1:15989645/1‑35 (MQ=255) tCTGGAAATGAACTTTTCAAGCCTTATCAGCGGAc > 1:715623/1‑35 (MQ=255) tCTGGAAATGAACTTTTCAAGCCTTATCAGCGGAc > 1:10635847/1‑35 (MQ=255) tCTGGAAATGAACTTTTCAAGCCTTATCAGCGGAc > 1:3464230/1‑35 (MQ=255) tCTGGAAATGAACTTTTCAAGCCTTATAAGCGGAc < 1:16426391/35‑1 (MQ=255) cTGGAAATGAACTTTTCAAGCCTTATCAGCGTACt > 1:7374203/1‑35 (MQ=255) cTGGAAATGAACTTTTCAAGCCTTATCAGCGGACt < 1:2609185/35‑1 (MQ=255) tGGAAATGAACTTTTCAAGCCTTATCAGCGGACtt < 1:10796123/35‑1 (MQ=255) gAAATGAACTTTTCAAGCCTTATCAGCGGACtttt < 1:5985980/35‑1 (MQ=255) aaaTGAACTTTTCAAGCCTTATCATCGGACttttt > 1:4635017/1‑35 (MQ=255) aaaTGAACTTTTCAAGCCTTATCAGCGGACttttt > 1:16206083/1‑35 (MQ=255) aaaTGAACTTTTCAAGCCTTATCAGCGGACttttt > 1:13520222/1‑35 (MQ=255) aaaTGAACTTTTCAAGCCTTATCAGCGGACttttt > 1:16847115/1‑35 (MQ=255) aaaTGAACTTTTCAAGCCTTATCAGCGGACttttt > 1:7952271/1‑35 (MQ=255) aaTGAACTTTTCAAGCCTTATCAGCGGACtttttt > 1:13861605/1‑35 (MQ=255) aaTGAACTTTTCAAGCCTTATCAGCGGACtttttt < 1:761897/35‑1 (MQ=255) aaTGAACTTTTCAAGCCTTATCAGCGGACtttttt < 1:17220218/35‑1 (MQ=255) aaTGAACTTTTCAAGCCTTATCAGCGGACtttttt < 1:9863593/35‑1 (MQ=255) aTGAACTTTTCAAGCCTTATCAGCGGACttttttt < 1:11257092/35‑1 (MQ=255) aTGAACTTTTCAAGCCTTATCAGCGGACttttttt > 1:1946574/1‑35 (MQ=255) aTGAACTTTTCAAGCCTTATCAGCGGACttttttt > 1:15585840/1‑35 (MQ=255) tGAACTTTTCAAGCCTTATCAGCGGACtttttttt > 1:4001826/1‑35 (MQ=255) tGAACTTTTCAAGCCTTATCAGCGGACtttttttt > 1:14299520/1‑35 (MQ=255) gAACTTTTCAAGCCTTATCAGCGGACTTTTTTTTg > 1:17260716/1‑35 (MQ=255) gAACTTTTCAAGCCTTATCAGCGGACTTTTTTTTg > 1:10484957/1‑35 (MQ=255) gAACTTTTCAAGCCTTATCAGCGGACTTTTTTTTg < 1:1508776/35‑1 (MQ=255) aaCTTTTCAAGCCTTATCAGCGGACTTTTTTTTGc > 1:8056127/1‑35 (MQ=255) aaCTTTTCAAGCCTTATCAGCGGACTTTTTTTTGc < 1:11038775/35‑1 (MQ=255) aCTTTTCAAGCCTTATCAGCGGACTTTTTTTTGCa > 1:12256457/1‑35 (MQ=255) aCTTTTCAAGCCTTATCAGCGGACTTTTTTTTGCa > 1:1142595/1‑35 (MQ=255) aCTTTTCAAGCCTTATCAGCGGACTTTTTTTTGCa < 1:5102942/35‑1 (MQ=255) cTTTTCAAGCCTTATCAGCGGACTTTTTTTTGCAg < 1:17633844/35‑1 (MQ=255) cTTTTCAAGCCTTATCAGCGGACTTTTTTTTGCAg > 1:5344410/1‑35 (MQ=255) ttttCAAGCCTTATCAGCGGACTTTTTTTTGCAGt > 1:18470877/1‑35 (MQ=255) ttttCAAGCCTTATCAGCGGACTTTTTTTTGCAGt < 1:1173137/35‑1 (MQ=255) ttttCAAGCCTTATCAGCGGACTTTTTTTTGCAGt > 1:383348/1‑35 (MQ=255) tttgCAAGCATTATCAGCGGACTTTTGTTTGCAGt < 1:1072952/35‑1 (MQ=255) tttCAAGCCTTATCAGCGGACTTTTTTTTGCAGtt < 1:10216121/35‑1 (MQ=255) tttCAAGCCTTATCAGCGGACTTTTTTTTGCAGtt < 1:20195559/35‑1 (MQ=255) tttCAAGCCTTATCAGCGGACTTTTTTTTGCAGtt < 1:6838149/35‑1 (MQ=255) tttCAAGCATTATCAGCGGACTTTTTTTTGCAGtt < 1:14093425/35‑1 (MQ=255) ttCAAGCCTTATCAGCGGACTTTTTTTTGCAGttt < 1:274056/35‑1 (MQ=255) ttCAAGCCTTATCAGCGGACTTTTTTTTGCAGttt > 1:9191479/1‑35 (MQ=255) tCAAGCCTTATCAGCGGACTTTTTTTTGCAGTTTa > 1:12504712/1‑35 (MQ=255) tCAAGCCTTATCAGCGGACTTTTTTTTGCAGTTTa < 1:10357950/35‑1 (MQ=255) cAAGCCTTATCAGCGGACTTTTTTTTGCAGTTTAt < 1:3321559/35‑1 (MQ=255) cAAGCCTTATCAGCGGACTTTTTTTTGCAGTTTAt > 1:10334279/1‑35 (MQ=255) cAAGCCTTATCAGCGGACTTTTTTTTGCAGTTTAt > 1:7397475/1‑35 (MQ=255) aaaGCCTTATCAGCGGACTTTTTTTTGCAGTTTAt < 1:8841017/34‑1 (MQ=255) aaGCCTTATCAGCGGGCTTTTTTTTGCAGTTTATg < 1:4013334/35‑1 (MQ=255) aGCCTTATCAGCGGACTTTTTTTTGCAGTTTATgg > 1:3355247/1‑35 (MQ=255) aGCCTTATCAGCGGACTTTTTTTTGCAGTTTATgg < 1:6511102/35‑1 (MQ=255) aGCCTTATCAGCGGACTTTTTTTTGCAGTTTATgg > 1:12212786/1‑35 (MQ=255) aGCCTTATCAGCGGACTTTTTTTTGCAGTTTATgg > 1:16359740/1‑35 (MQ=255) gCCTTATCAGCGGACTTTTTTTTGCAGTTTATGGt < 1:19879219/35‑1 (MQ=255) gCCTTATCAGCGGACTTTTTTTTGCAGTTTATGGt < 1:9381484/35‑1 (MQ=255) gCCTTATCAGCGGACTTTTTTTTGCAGTTTATGGt < 1:6342584/35‑1 (MQ=255) gCCTTATCAGCGGACTTTTTTTTGCAGTTTATGGt < 1:14754699/35‑1 (MQ=255) ccTTATCAGCGGACTTTTTTTTGCAGTTTATGGTc < 1:10567864/35‑1 (MQ=255) ccTTATCAGCGGACTTTTTTTTGCAGTTTATGGTc < 1:10875891/35‑1 (MQ=255) cTTATCAGCGGACTTTTTTTTGCAGTTTATGGTCt < 1:16917728/35‑1 (MQ=255) cTTATCAGCGGACTTTTTTTTGCAGTTTATGGTCt < 1:9269840/35‑1 (MQ=255) ttATCAGCGGACTTTTTTTTGCAGTTTATGGTCTa > 1:5549149/1‑35 (MQ=255) ttATCAGCGGACTTTTTTTTGCAGTTTATGGTCTa > 1:14466215/1‑35 (MQ=255) ttATCAGCGGACTTTTTTTTGCAGTTTATGGTCTa > 1:15287947/1‑35 (MQ=255) ttATCAGCGGACTTTTTTTTGCAGTTTATGGTCTa > 1:18104467/1‑35 (MQ=255) tATCAGCGGACTTTTTTTTGCAGTTTATGGTCTAt < 1:11109289/35‑1 (MQ=255) tATCAGCGGACTTTTTTTTGCAGTTTATGGGCTAt > 1:4926647/1‑35 (MQ=255) aTCAGCGGACTTTTTTTTGCAGTTTATGGTCTAtt > 1:1676765/1‑35 (MQ=255) tCAGCGGACTTTTTTTTGCAGTTTATGGTCTATTg < 1:9003243/35‑1 (MQ=255) tCAGCGGACTTTTTTTTGCAGTTTATGGTCTATTg > 1:8422597/1‑35 (MQ=255) tCAGCGGACTTTTTTTTGCAGTTTATGGTCTATTg < 1:17507642/35‑1 (MQ=255) tCAGCGGACTTTTTTTTGCAGTTTATGGTCTATTg > 1:7777116/1‑35 (MQ=255) tCAGCGGACTTTTTTTTGCAGTTTATGGTCTATTg < 1:10237870/35‑1 (MQ=255) tCAGCGGACTTTTTTTTGCAGTTTATGGTCTATTg < 1:9969859/35‑1 (MQ=255) cAGCGGACTTTTTTTTGCAGTTTATGGTCTATTGc > 1:5954812/1‑35 (MQ=255) cAGCGGACTTTTTTTTGCAGTTTATGGTCTATTGc > 1:17988611/1‑35 (MQ=255) aGCGGACTTTTTTTTGCAGTTTATGGTCTATTGCa < 1:20046003/35‑1 (MQ=255) aGCGGACTTTTTTTTGCAGTTTATGGTCTATTGCa > 1:13457023/1‑35 (MQ=255) aGCGGACTTTTTTTTGCAGTTTATGGTCTATTGCa > 1:18894597/1‑35 (MQ=255) ncGGACTTTTTTTTGCAGTTTATGGTCTATTGCAt > 1:4137231/2‑35 (MQ=255) gCGGACTTTTTTTTGCAGTTTATGGTCTATTGCAt > 1:101356/1‑35 (MQ=255) gCGGACTTTTTTTTGCAGTTTATGGTCTATTGCAt > 1:12594048/1‑35 (MQ=255) gCGGACTTTTTTTTGCAGTTTATGGTCTATTGCAt < 1:13143275/35‑1 (MQ=255) gCGGACTTTTTTTTGCAGTTTATGGTCTATTGCAt < 1:15384779/35‑1 (MQ=255) gCGGACTTTTTTTTGCAGTTTATGGTCTATTGCAt > 1:15635014/1‑35 (MQ=255) gCGGACTTTTTTTTGCAGTTTATGGTCTATTGCAt > 1:16660555/1‑35 (MQ=255) gCGGACTTTTTTTTGCAGTTTATGGTCTATTGCAt > 1:19299440/1‑35 (MQ=255) gCGGACTTTTTTTTGCAGTTTATGGTCTATTGCAt < 1:6709444/35‑1 (MQ=255) gCGGACTTTTTTTTGCAGTTTATGGTCTATTGCAt > 1:20429256/1‑35 (MQ=255) gCGGACTTTTTTTTGCAGTTTATGGTCTATTGCAt < 1:2243095/35‑1 (MQ=255) cGGACTTTTTTTTGCAGTTTATGGTCTATTGCATa > 1:18351704/1‑35 (MQ=255) cGGACTTTTTTTTGCAGTTTATGGTCTATTGCATa > 1:16257558/1‑35 (MQ=255) cGGACTTTTTTTTGCAGTTTATGGTCTATTGCATa < 1:11907866/35‑1 (MQ=255) ggACTTTTTTTTGCAGTTTATGGTCTATTGCATAg > 1:17816644/1‑35 (MQ=255) ggACTTTTTTTTGCAGTTTATGGTCTATTGCATAg > 1:15043394/1‑35 (MQ=255) gACTTTTTTTTGCAGTTTATGGTCTATTGCATAGa < 1:19655240/35‑1 (MQ=255) aCTTTTTTTTGCAGTTTATGGTCTATTGCATAGAc < 1:17034628/35‑1 (MQ=255) aCTTTTTTTTGCAGTTTATGGTCTATTGCATAGAc < 1:20258185/35‑1 (MQ=255) TCTGGAAATGAACTTTTCAAGCCTTATCAGCGGACTTTTTTTTGCAGTTTATGGTCTATTGCATAGACT > REL606/3827894‑3827962 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |