New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1430232 =98 (0.950)7 (0.100) 3/34 NT 10.1% coding (2159/3525 nt) ydbK fused predicted pyruvate‑flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein
?REL606 3284457 = 55 (0.760)coding (588/729 nt) mtgA monofunctional biosynthetic peptidoglycan transglycosylase

Only 100 of 204 total aligned reads displayed.

CATATCACGCGATTTCACATCCAGCGAATGCAGGCTGGCAGGGGCGTTTTCCATCGCTTCAGGCGGCAC  >  REL606/1430198‑1430266
                                  |                                   
cgcgagcaaacttacccggtcggaagctgcattac                                     >  1:3252691‑M1/35‑35 (MQ=255)
cATATCACGCGATTTCACATCCAGCGAATGCATGc                                     >  1:2653162/1‑35 (MQ=255)
cATATCACGCGATTTCACATCCAGCGAATGCAGGc                                     >  1:2005849/1‑35 (MQ=255)
cATATCACGCGATTTCACATCCAGCGAATGCAGGc                                     >  1:15210549/1‑35 (MQ=255)
 gcgagcaaacttacccggtcggaagctgcattaCt                                    >  1:2096822‑M1/34‑35 (MQ=255)
 gcgagcaaacttacccggtcggaagctgcattaCt                                    >  1:15842880‑M1/34‑35 (MQ=255)
 gcgagcaaacttacccggtcggaagctgcattaCt                                    <  1:13552841‑M1/2‑1 (MQ=255)
 gcgagcaaacttacccggtcggaagctgcattaCt                                    >  1:5979425‑M1/34‑35 (MQ=255)
 atatCACGCGATTTCACATCCAGCGAATGCAGGCt                                    >  1:366103/1‑35 (MQ=255)
 atatCACGCGATTTCACATCCAGCGAATGCAGGCt                                    >  1:15549278/1‑35 (MQ=255)
  tatCACGCGATTTCACATCCAGCGAATGCAGGCTg                                   <  1:11451461/35‑1 (MQ=255)
  tatCACGCGATTTCACATCCAGCGAATGCAGGCTg                                   <  1:824887/35‑1 (MQ=255)
  tatCACGCGATTTCACATCCAGCGAATGCAGGCTg                                   >  1:5698180/1‑35 (MQ=255)
  tatCACGCGATTTCACATCCAGCGAATGCAGGCTg                                   >  1:4995687/1‑35 (MQ=255)
  cgagcaaacttacccggtcggaagctgcattaCTg                                   >  1:10911669‑M1/33‑35 (MQ=255)
   gagcaaacttacccggtcggaagctgcattaCTgg                                  >  1:4037507‑M1/32‑35 (MQ=255)
   gagcaaacttacccggtcggaagctgcattaCTgg                                  <  1:3111844‑M1/4‑1 (MQ=255)
   gagcaaacttacccggtcggaagctgcattaCTgg                                  <  1:1663586‑M1/4‑1 (MQ=255)
   gagcaaacttacccggtcggaagctgcattaCTgg                                  <  1:14126373‑M1/4‑1 (MQ=255)
    tCACGCGATTTCACATCCAGCGAATGCAGGCTGGc                                 <  1:2473555/35‑1 (MQ=255)
    tCACGCGATTTCACATCCAGCGAATGCAGGATGGc                                 <  1:3532594/35‑1 (MQ=255)
    agcaaacttacccggtcggaagctgcattactgag                                 <  1:15035378‑M1/5‑3 (MQ=255)
    agcaaacttacccggtcggaagctgcattaCTGGc                                 >  1:2958199‑M1/31‑35 (MQ=255)
    agcaaacttacccggtcggaagctgcattaCTGGc                                 >  1:19910512‑M1/31‑35 (MQ=255)
     gcaaacttacgcggtcggaagctgcattaCTGGCa                                >  1:2861085‑M1/30‑35 (MQ=255)
     gcaaacttacccggtcggaagctgcattaCTGGCa                                <  1:8360080‑M1/6‑1 (MQ=255)
     gcaaacttacccggtcggaagctgcattaCTGGCa                                <  1:16337035‑M1/6‑1 (MQ=255)
     cACGCGATTTCACATCCAGCGAATGCAGGCTGGCa                                >  1:7695164/1‑35 (MQ=255)
     cACGCGATTTCACATCCAGCGAATGCAGGCTGGCa                                <  1:15937111/35‑1 (MQ=255)
     cACGCGATTTCACATCCAGCGAATGCAGGCTGGCa                                >  1:16003923/1‑35 (MQ=255)
     cACGCGATTTCACATCCAGCGAATGCAGGCTGGCa                                >  1:4213372/1‑35 (MQ=255)
      caaacttacccggtcggaagctgcattaCTGGCAg                              <  1:2684527‑M1/7‑1 (MQ=255)
      caaacttacccggtcggaagctgcattaCTGGCAg                              >  1:459299‑M1/29‑35 (MQ=255)
      caaacttacccggtcggaagctgcattaCTGGCAg                              <  1:4536649‑M1/7‑1 (MQ=255)
      caaacttacccggtcggaagctgcattaCTGGCAg                              <  1:5755216‑M1/7‑1 (MQ=255)
      aCGCGATTTCACATCCAGCGAATGCAGGCTGGCAg                              >  1:3133427/1‑35 (MQ=255)
      aCGCGATTTCACATCCAGCGAATGCAGGCTGGCAg                              <  1:18182846/35‑1 (MQ=255)
      aCGCGATTTCACATCCAGCGAATGCAGGCTGGCAg                              <  1:4737667/35‑1 (MQ=255)
      aCGCGATTTCACATCCAGCGAATGCAGGCTGGCAg                              >  1:5344807/1‑35 (MQ=255)
       cgcgATTTCACATCCAGCGAATGCAGGCTGGCAgg                             <  1:9636445/35‑1 (MQ=255)
       cgcgATTTCACATCCAGCGAATGCAGGCTGGCAgg                             >  1:12429210/1‑35 (MQ=255)
       aaacttacccggtcggaagctgcattaCTGGCAgg                             <  1:16878466‑M1/8‑1 (MQ=255)
        gcgATTTCCCATCCAGCGAATGCAGGCTGGCAggg                            <  1:9485427/35‑1 (MQ=255)
         cgATTTCCCATCCAGCGAATGCAGGCTGGCAgggg                           <  1:7111656/35‑1 (MQ=255)
         cgATTTCACATCCAGCGAATGCAGGCTGGCAgggg                           >  1:10179433/1‑35 (MQ=255)
         acttacccggtcggaagctgcattaCTGGCAgggg                           <  1:6996888‑M1/10‑1 (MQ=255)
          gATTTCACATCCAGCGAATGCAGGCTGGCAggggg                          >  1:785425/1‑34 (MQ=255)
          gATTTCACATCCAGCGAATGCAGGCTGGCAggggg                          >  1:13886591/1‑34 (MQ=255)
          gATTTCACATCCAGCGAATGCAGGCTGGCAggggg                          >  1:13662966/1‑34 (MQ=255)
          gATTTCACATCCAGCGAATGCAGGCTGGCAGGGGc                          <  1:10012344/35‑1 (MQ=255)
          cttacccggtcggaagctgcattaCTGGCaggggg                          <  1:18350050‑M1/11‑2 (MQ=255)
          agtttCGCATCCAGCGAATGCAGGCTGGCAGGGGc                          <  1:15286191/33‑1 (MQ=38)
           aTTTCATATCCAGCGAATGCAGGCTGGGAgggggg                         >  1:20094580/1‑33 (MQ=25)
           aTTTCACATCCAGCGAATGCAGGCTGGCAgggggg                         >  1:173266/1‑33 (MQ=255)
           aTTTCACATCCAGCGAATGCAGGCTGGCAgggggg                         >  1:17905879/1‑33 (MQ=255)
            tttCCCATCCAGCGAATGCAGGCTGGCAGGGGCGt                        <  1:18422612/35‑1 (MQ=255)
            tttCACATCCAGCGAATGCAGGCTGGCAggggggg                        >  1:9338927/1‑32 (MQ=255)
            tttCACATCCAGCGAATGCAGGCTGGCAGGGGCGt                        <  1:3358684/35‑1 (MQ=255)
             acccggtcggaagctgcattaCTGGCAGGGGGGtt                       <  1:17474359‑M1/14‑1 (MQ=255)
              tCACATCCAGCGAATGCAGGCTGGCAGGGGCGttt                      <  1:4321444/35‑1 (MQ=255)
              cccggtcggaagctgcattaCTGGCAGGGGGgtta                      <  1:1046908‑M1/15‑2 (MQ=255)
               cacaTCCAGCGAATGCAGGCTGGCAGGGGGGgttt                     >  1:13984655/1‑35 (MQ=38)
               cacaTCCAGCGAATGCAGGCTGGCAGGGGCGtttt                     <  1:14492896/35‑1 (MQ=255)
                cggtcggaagctgcattaCTGGCAGGGGTGTTTTc                    <  1:9623199‑M1/17‑1 (MQ=255)
                cggtcggaagctgcattaCTGGCAGGGGGGTTTTc                    <  1:8639598‑M1/17‑1 (MQ=255)
                acaTCCAGCGAATGCAGGCTGGCAGGGGGGtttta                    >  1:19722266/1‑34 (MQ=255)
                acaTCCAGCGAATGCAGGCTGGCAGGGGGGGTTTc                    >  1:6455313/1‑35 (MQ=38)
                 caTCCAGCGGATGCAGGCTGGCAGGGGCGtttttc                   <  1:19785462/35‑3 (MQ=25)
                 caTCCAGCGAATGCAGGCTGGCAGGGGGGgttttc                   >  1:18805055/1‑33 (MQ=25)
                 caTCCAGCGAATGCAGGCTGGCAGGGGGGgttttc                   >  1:1471876/1‑33 (MQ=25)
                 caTCCAGCGAATGCAGGCTGGCAGGGGCGTTTTcc                   <  1:3047532/35‑1 (MQ=255)
                     cAGCGAATGCAGGCTGGCAGGGGCGTTTTCCATCg               <  1:4401877/35‑1 (MQ=255)
                      aGCGAATGCAGGCTGGCAGGGGGGGTTTTCCaacc               >  1:19762863/1‑32 (MQ=19)
                       gCGAATGCAGGCTGGCAGGGGGGGTTTCCATCggt             >  1:12851428/1‑33 (MQ=37)
                        cGAATGCAGGCTGGCAGGGGGGGTTTCCATCGCtt            >  1:9734137/1‑35 (MQ=38)
                        cGAATGCAGGCTGGCAGGGGCGTTTTCCATCGCtt            <  1:6818099/35‑1 (MQ=255)
                          aaTGCAGGCTGGCAGGGGCGTTTTCCATCGCTTCa          <  1:9023166/35‑1 (MQ=255)
                          aaTGCAGGCTGGCAGGGGCGTTTTCCATCGCTTCa          <  1:7487290/35‑1 (MQ=255)
                           aTGCAGGCTGGCAGGGGGGGTTTTCATCGCTTCAg         >  1:8984327/1‑35 (MQ=25)
                            tGCAGGCTGGNAGGGGCGTTTTCCATCGCTTCAgg        <  1:6033467/35‑1 (MQ=255)
                            tGCAGGCTGGCAGGGGCGTTTTCCATCGCTTCAgg        <  1:16673787/35‑1 (MQ=255)
                            tGCAGGCTGGCAGGGGCGTTTTCCATCGCTTCAgg        <  1:11157546/35‑1 (MQ=255)
                            tGCAGGCTGGCAGGGGCGTTTTCCATCGCTTCAgg        <  1:11191991/35‑1 (MQ=255)
                             gCAGGCTGGCAGGGGCGTTTTCCATCGCTTCAggc       <  1:11223308/35‑1 (MQ=255)
                             gCAGGCTGGCAGGGGCGTTTTCCATCGCTTCAggc       <  1:11777523/35‑1 (MQ=255)
                             gCAGGCTGGCAGGGGCGTTTTCCATCGCTTCAggc       <  1:1068368/35‑1 (MQ=255)
                             gCAGGCTGGCAGGGGCGTTTTCCATCGCTTCAggc       <  1:19184164/35‑1 (MQ=255)
                              cAGGCTGGCAGGGGCGTTTTCCATCGCTTCAggcg      <  1:7948663/35‑1 (MQ=255)
                              cAGGCTGGCAGGGGCGTTTTCCATCGCTTCAggcg      <  1:17491017/35‑1 (MQ=255)
                               aGGCTGGCAGGGGCGTTTTCCATCGCTTCAggcgg     <  1:6269334/35‑1 (MQ=255)
                                ggCTGGCAGGGGCGTTTTCCATCGCTTCAggcggc    <  1:10935733/35‑1 (MQ=255)
                                ggCTGGCAGGGGCGTTTTCCATCGCTTCAggcggc    <  1:8734486/35‑1 (MQ=255)
                                 gCTGGCATGGGCGTTTTCCATCGCTTCAGGCGGca   >  1:3340876/1‑35 (MQ=255)
                                 gCTGGCAGGGGCGTTTTCCATCGCTTCAGGCGGca   <  1:20510717/35‑1 (MQ=255)
                                  CTGGCAGGGGCGTTTTGCATCGCTTCAGGCGGcac  >  1:8126472‑M1/1‑35 (MQ=255)
                                  CTGGCAGGGGCGTTTTCCATCGCTTCAGGCGGcac  >  1:8470213‑M1/1‑35 (MQ=255)
                                  CTGGCAGGGGCGTTTTCCATCGCTTCAGGCGGcac  <  1:8087869‑M1/35‑1 (MQ=255)
                                  CTGGCAGGGGCGTTTTCCATCGCTTCAGGCGGcac  >  1:3180452‑M1/1‑35 (MQ=255)
                                  CTGGCAGGGGCGTTTTCCATCGCTTCAGGCGGcac  <  1:5474601‑M1/35‑1 (MQ=255)
                                  CTGGCAGGGGCCTTTTCCATCGCTTCAGGCGGcac  <  1:1259644‑M1/35‑1 (MQ=255)
                                  |                                   
CATATCACGCGATTTCACATCCAGCGAATGCAGGCTGGCAGGGGCGTTTTCCATCGCTTCAGGCGGCAC  >  REL606/1430198‑1430266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.