New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3302668 = | 53 (0.520) | 10 (0.120) | 6/38 | NT | 13.9% | intergenic (‑281/‑99) | nanR/dcuD | transcriptional regulator NanR/predicted transporter |
? | REL606 | 4085857 = | 82 (1.010) | intergenic (+55/‑94) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F |
Only 100 of 198 total aligned reads displayed.
ATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG > REL606/4085823‑4085888 | ggttaatcagaccattggtcgagctatcgtggcTg < 1:12804321‑M1/2‑1 (MQ=255) ggttaatcagaccattggtcgagctatcgtggcTg < 1:18671073‑M1/2‑1 (MQ=255) ggttaatcagaccattggtcgagctatcgtggcTg < 1:16384973‑M1/2‑1 (MQ=255) aTAGACACCATCCCTGTCTTCCCCCACATGAtgtg < 1:8936010/35‑1 (MQ=255) aTAGACACCATCCCTGTCTTCCCCCACATGAtgtg < 1:10206547/35‑1 (MQ=255) aTAGACACCATCCCTGTCTTCCCCCACATGAtgtg > 1:5529704/1‑35 (MQ=255) tAGACACCATCCCTGTCTTCCCCCACATGATGTgn < 1:15103535/35‑1 (MQ=255) tAGACACCATCCCTGTCTTCCCCCACATGATGTgg > 1:5199534/1‑35 (MQ=255) tAGACACCATCCCTGTCTTCCCCCACATGATGTgg < 1:11559205/35‑1 (MQ=255) tAGACACCATCCCTGTCTTCCCACACATGATGTgg < 1:18510542/35‑1 (MQ=255) tAGACACCATCCCTGTATTCCCCCACATGATGTgg < 1:11017385/35‑1 (MQ=255) gttaatcagaccattggtcgagctatcgtggcTgg < 1:6552748‑M1/3‑1 (MQ=255) gttaatcagaccattggtcgagctatcgtggcTgg < 1:11245895‑M1/3‑1 (MQ=255) gttaatcagaccattggtcgagctatcgtggcTgg < 1:17580807‑M1/3‑1 (MQ=255) ttaatcagaccattggtcgagctatcgtggctggt < 1:15416521‑M1/4‑2 (MQ=255) ttaatcagaccattggtcgagctatcgtggcTggg < 1:16986395‑M1/4‑1 (MQ=255) ttaatcagaccattggtcgagctatcgtggcTggg < 1:18781774‑M1/4‑1 (MQ=255) aGACACCATCCCTGTCTTCCCCCACATGATGTggg < 1:17594398/35‑1 (MQ=255) aGACACCATCCCTGTCTTCCCCCACATGATGTggg < 1:362459/35‑1 (MQ=255) aGACACCATCCCTGTCTTCCCCCACATGATGTggg > 1:9871432/1‑35 (MQ=255) ttttttgcaaggctatttatggtgcggatgggggg > 1:13559921‑M2/32‑35 (MQ=255) taatcagaccattggtcgagctatcgtggcTgggg < 1:15677561‑M1/5‑1 (MQ=255) gACACCATCCCTGTCTTCCCCCACATGATGTgggg > 1:3687861/1‑35 (MQ=255) tttttgcaaggctatttatggtgcggatggggggg > 1:2863045‑M2/31‑35 (MQ=255) acacCATCCCTGTCTTCCCCCACATGATGTggggg > 1:11629451/1‑35 (MQ=255) acacCATCCCTGTCTTCCCCCACATGATGTggggg > 1:41613/1‑35 (MQ=255) aatcagaccattggtcgagctatcgtggctggggc < 1:11703544‑M1/6‑2 (MQ=255) cacCATCCCTGTCTTCCCCCACATGATGTGGGGGt < 1:74153/35‑1 (MQ=255) cacCATCCCTGTCTTCCCCCACATGATGTGGGGGt < 1:19872487/35‑1 (MQ=255) tttgcaaggctatttatggtgcggatggGGGGGtt > 1:2259307‑M2/29‑35 (MQ=255) tcagaccattggtcgagctatcgtggcTGGGGGtt < 1:8010719‑M1/8‑1 (MQ=255) acCATCCCTGTCTTCCCCCACATGATGTGGGGGtt < 1:19117474/35‑1 (MQ=255) acCATCCCTGTCTTCCCCCACATGATGTGGGGGtt < 1:14829896/35‑1 (MQ=255) acCATCCCTGTCTTCCCCCACATGATGTGGGGGtt < 1:15202970/35‑1 (MQ=255) acCATCCCTGTCTTCCCCCACATGATGTGGGGGtt < 1:16204576/35‑1 (MQ=255) ccATCCCTGTCTTCCCCCACATGATGTGGGGGgtt > 1:18540333/1‑35 (MQ=255) cATCCCTGTCTTCCCCCACATGATGTGGGGGtttt < 1:695162/35‑1 (MQ=255) cATCCCTGTCTTCCCCCACATGATGTGGGGGgttt > 1:2884248/1‑35 (MQ=255) cATCCCTGTCTTCCCCCACATGATGTGGGGGgttt > 1:10635424/1‑35 (MQ=255) cATCCCTGTCTTCCCCCACATGATGGGGGGGgttt > 1:14738973/1‑35 (MQ=38) agaccattggtcgagctatcgtggcTGGGGGtttt < 1:20032548‑M1/10‑1 (MQ=255) aTCCCTGTCTTCCCCCACATGATGTGGGGGttttt < 1:15878535/35‑1 (MQ=255) aTCCCTGTCTTCCCCCACATGATGTGGGGGttttt < 1:1265610/35‑1 (MQ=255) aTCCCTGTCTTCCCCCACATGATGTGGGGGttttt < 1:5340725/35‑1 (MQ=255) aTCCCTGTCTTCCCCCACATGATGTGGGGGgtttt > 1:10046580/1‑35 (MQ=255) aTCCCTGTCTTCCCCCACATGATGTGGGGGgtttt > 1:13078307/1‑35 (MQ=255) aTCCCTGTCTTCCCCCACATGATGTGGGGGgtttt > 1:17412663/1‑35 (MQ=255) cccTGTCTTCCCCCACATGATGTGGGGGttttttt < 1:19054136/35‑1 (MQ=255) cccTGTCTTCCCCCACATGATGTGGGGGttttttt < 1:8785695/35‑1 (MQ=255) ccattggtcgagctatcgtggcTGGGGGttttttt < 1:12154751‑M1/13‑1 (MQ=255) ccattggtcgagctatcgtggcTGGGGGttttttt < 1:2118457‑M1/13‑1 (MQ=255) ccattggtcgagctatcgtggcTGGGGGgtttttt < 1:18818946‑M1/13‑1 (MQ=255) ccTGTCTTCCCCCACATGATGTGGGGGtttttttt < 1:3327019/35‑1 (MQ=255) ccTGTCTTCCCCCACATGATGTGGGGGgttttttt > 1:10060995/1‑35 (MQ=255) cattggtcgagctatcgtggcTGGTGGtttttttt < 1:20446137‑M1/14‑1 (MQ=255) cattggtcgagctatcgtggcTGGGGGtttttttt < 1:9571317‑M1/14‑1 (MQ=255) cattggtcgagctatcgtggcTGGGGGtttttttt < 1:7855256‑M1/14‑1 (MQ=255) aggctatttatggtgcggatggGGGGGtttttttt > 1:2737138‑M2/23‑35 (MQ=255) ggctatttatggtgcggatggGGGGgttttttttt > 1:5677434‑M2/22‑34 (MQ=255) cTGTCTTCCCCCACATGATGTGGGGGgtttttttt > 1:12004617/1‑34 (MQ=255) attggtcgagctatcgtggcTGGGGgttttttttt < 1:6242381‑M1/15‑2 (MQ=255) attggtcgagctatcgtggcTGGGGgtttcttttt < 1:4561742‑M1/15‑2 (MQ=255) ttggtcgagctatcgtggcTGGGggtttttttttt < 1:14417619‑M1/16‑3 (MQ=255) ttggtcgagctatcgtggcTGGGggtttttttttt < 1:11125523‑M1/16‑3 (MQ=255) tGTCTTCCCCCACATGATGTGGGGGtttttttttt > 1:2945875/1‑33 (MQ=255) tGTCTTCCCCCACATGATGTGGGGGgttttttttt > 1:16316835/1‑33 (MQ=37) tGTCTTCCCCCACATGATGTGGGGGgttttttttt > 1:2612994/1‑33 (MQ=37) tGTCTTCCCCCACATGATGTGGGGGgttttttttt > 1:17169856/1‑33 (MQ=37) tGTCTTCCCCCACATGATGTGGGGGTTTTTTTTAt < 1:14225423/35‑1 (MQ=255) tGTCTTCCCCCACATGATGTGGGGGTTTTTTTTAt < 1:9696462/35‑1 (MQ=255) gTCTTCCCCCACATGATGTGGGGGTTTTTTTTATc < 1:14644912/35‑1 (MQ=255) gTCTTCCCCCACATGATGTGGGGGGTTTTTTTTTc > 1:5485741/1‑35 (MQ=37) cTTCCCCCACATGATGTGGGGGTTTTTTTTATCCt < 1:5027224/35‑1 (MQ=255) cTTCCCCCACATGATGTGGGGGGTTTTTTTATTCt > 1:20254376/1‑35 (MQ=37) ttCCCCCACATGATGTGGTGGTTTTTTTTATCCTc < 1:15576863/35‑1 (MQ=255) ttCCCCCACATGATGTGGGGGTTTTTTTTATCCTc < 1:7981538/35‑1 (MQ=255) tCCCCCACATGATGTGGGGG‑TTTTTTTATCCTCaa < 1:16558481/35‑1 (MQ=37) gcccccGCATGATGTGGGGGTTTTTTTTATCCTCa < 1:12231398/34‑1 (MQ=255) cccccACATGATGTGGGGGTTTTTTTTATCCTCaa < 1:12930696/35‑1 (MQ=255) cccccACATGATGTGGGGGTTTTTTTTATCCTCaa > 1:12513393/1‑35 (MQ=255) cccccACATGATGTGGGGGGTTTTTTTATCCTCaa > 1:10326830/1‑35 (MQ=255) ccccACATGATGTGGGGGTTTTTTTTATCCTCAAt < 1:18330036/35‑1 (MQ=255) cccACATGATGTGGGGGTTTTTTTTATCCTCAAtt < 1:18073537/35‑1 (MQ=255) accACATGATGTGGGGGTTTTTTTTATCCTCaact < 1:10058383/34‑3 (MQ=255) ccACATGATGTGGGGGTTTTTTTTATCCTCAAttt < 1:16123998/35‑1 (MQ=255) cacaTGATGTGGGGGTTTTTTTTATCCTCAATTTg < 1:9497579/35‑1 (MQ=255) cacaTGATGTGGGGGTTTTTTTTATCCTCAATTTg < 1:8654735/35‑1 (MQ=255) cacaTGATGTGGGGGGTTTTTTTATCCTCAATTTg > 1:3041094/1‑35 (MQ=255) acaTGATGTGGGGGTTTTTTTTATCCTCAATTTGc < 1:897353/35‑1 (MQ=255) atgatgTGGGGGTTTTTTTTATCCTCAATTTGCct < 1:429445/35‑1 (MQ=255) atgatgTGGGGGTTTTTTTTATCCTCAATTTGCct > 1:11886891/1‑35 (MQ=255) atgatgTGGGGGTTTTTTTTATCCTCAATTTGCct < 1:3767310/35‑1 (MQ=255) atgatgTGGGGGTTTTTTTTATCCTCAATTTGCct > 1:6009550/1‑35 (MQ=255) tgatgTGGGGGTTTTTTTTATCCTCAATTTGCctg < 1:9121681/35‑1 (MQ=255) gatgtGGGGGTTTTTTTTATCCTCAATTTGCctgc < 1:16715921‑M2/30‑1 (MQ=255) gatgtGGGGGTTTTTTTTATCCTCAATTTGCctgc < 1:5767242‑M2/30‑1 (MQ=255) gatgtGGGGGTTTTTTTTATCCTCAATTTGCctgc < 1:6947271‑M2/30‑1 (MQ=255) gatgtGGGGGTTTTTTTTATCCTCAATTTGCctgc < 1:3415638‑M2/30‑1 (MQ=255) atgtGGGGGTTTTTTTTATCCTCAATTTGCctgct < 1:1324511‑M2/31‑1 (MQ=255) tgtGGGGGTTTTTTTTATCCTCAATTTGCctgctg < 1:3869425‑M2/32‑1 (MQ=255) | ATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG > REL606/4085823‑4085888 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |