New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 75650964 (0.620)16 (0.210) 4/36 NT 23.0% coding (475/693 nt) tolQ membrane spanning protein in TolA‑TolQ‑TolR complex
?REL606 1539626 = 59 (0.770)coding (46/2400 nt) dos cAMP phosphodiesterase, heme‑regulated

GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGGGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/756470‑756509
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcggGGAAAAAAATGCCATCGGCGGCATTTTCC  >  REL606/1539626‑1539654
                                                                     
GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG                                    >  1:1061194/1‑35
GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG                                    >  1:10824136/1‑35
GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG                                    >  1:10897787/1‑35
GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG                                    <  1:11877972/35‑1
GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG                                    >  1:13331092/1‑35
GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG                                    >  1:12627756/1‑35
GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGG                                    >  1:12837838/1‑35
 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG                                   <  1:15939517/35‑1
 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG                                   >  1:16017662/1‑35
 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG                                   >  1:14545737/1‑35
 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG                                   <  1:5346197/35‑1
 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG                                   >  1:6716168/1‑35
 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG                                   <  1:7913728/35‑1
 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG                                   <  1:1978047/35‑1
 TCTGGGGGATCATGCACGCCTTTATCGCCCTCGGG                                   <  1:19461745/35‑1
  CTGGGGGATCATGCACGCCTTTATCGCCCTCGGGG                                  >  1:13508519/1‑35
  CTGGGGGATCATGCACGCCTTTATCGCCCTCGGGG                                  >  1:14015466/1‑35
  CTGGGGGATCATGCACGCCTTTATCGCCCTCGGGG                                  >  1:5323725/1‑35
  CTGGGGGATCATGCACGCCTTTATCGCCCTCGGGG                                  <  1:18678751/35‑1
   TGGGGGATCATGCACGCCTTTATCGCCCTCGTGGC                                 >  1:9165441/1‑35
   TGGGGGATCATGCACGCCTTTATCGCCCTCGGGGC                                 <  1:2602558/35‑1
   TGGGGGATCATGCACGCCTTTATCGCCCTCGGGGC                                 <  1:5171291/35‑1
   TGGGGGATCATGCACGCCTTTATCGCCCTCGGGGC                                 >  1:14603858/1‑35
    nGGGGATCATGCACGCCTTTATCGCCCTCGGGGCG                                >  1:10802018/2‑35
    GGGGGATCATGCACGCCTTTATCGCCCTCGGGGCG                                <  1:3893147/35‑1
    GGGGGATCATGCACGCCTTTATCGCCCTCGGGGCG                                >  1:18093670/1‑35
     GGGGATCATGCACGCCTTTATCGCCCTCGTGGCGG                               >  1:8572960/1‑35
     GGGGATCATGCACGCCTTTATCGCCCTCGGGGCGG                               <  1:20413601/35‑1
     GGGGATCATGCACGCCTTTATCGCCCTCGGGGCGG                               <  1:17935926/35‑1
     GGGGATCATGCACGCCTTTATCGCCCTCGGGGCGG                               >  1:10197429/1‑35
     GGGGATCATGCACGCCTTTATCGCCCTCGGGGCGG                               <  1:14211036/35‑1
      GGGATCATGCACGCCTTTATCGCCCTCGGGGCGGG                              >  1:18112307/1‑35
      GGGATCATGCACGCCTTTATCGCCCTCGGGGCGGG                              >  1:4816494/1‑35
      GGGATCATGCACGCCTTTATCGCCCTCGGGGCGGG                              >  1:11980529/1‑35
      GGGATCATGCACGCCTTTATCGCCCTCGGGGCGGG                              >  1:2168112/1‑35
       GGATCATGCACGCCTTTATCGCCCTCGTGGCGGGG                             >  1:20244372/1‑35
       GGATCATGCACGCCTTTATCGCCCTCGGGGCGGGG                             >  1:13708483/1‑35
       GGATCATGCACGCCTTTATCGCCCTCGGGGCGGGG                             >  1:11223072/1‑35
        GATCATGCACGCCTTTATCGCCCTCGGGGCGGGGA                            >  1:19945817/1‑35
         ATCATGCACGCCTTTATCGCCCTCGGGGCGGGGAA                           >  1:15565978/1‑35
          TCATGCACGCCTTTATCGCCCTCGGGGCGGGAAAg                          >  1:748425/1‑34
           CATGCACGCCTTTATCTCCCTCGGGGCGGGGAAAA                         >  1:4059524/1‑35
           CATGCACGCCTTTATCGCCCTCGGGGCGGGGAAAc                         >  1:20476655/1‑34
           CATGCACGCCTTTATCGCCCTCGGGGCGGGGAAAA                         >  1:15565613/1‑35
            ATGCACGCCTTTATCGCCCTCGGGGCGGGGAAAca                        >  1:8902588/1‑33
            ATGCACGCCTTTATCGCCCTCGGGGCGGGGAAAAA                        >  1:8496589/1‑35
            ATGCACGCCTTTATCGCCCTCGGGGCGGGGAAAAA                        >  1:16701578/1‑35
             TGCACGCCTTTATCGCCCTCGGGGCGGGGGAAAAA                       >  1:3153834/1‑35
             TGCACGCCTTTATCGCCCTCGGGGCGGGGAAAAAA                       >  1:6047672/1‑35
             TGCACGCCTTTATCGCCCTCGGGGCGGGGAAAAAA                       >  1:9892283/1‑35
              GCACGCCTTTATCGCCCTCGGGGCGGGGAAACAAA                      >  1:5288674/1‑35
              GCACGCCTTTATCGCCCTCGGGGCGGGGAAAAAAA                      >  1:2703605/1‑35
               CACGCCTTTATCGCCCTCGGGGCGGGGAAAAAAAa                     >  1:6467856/1‑34
               CACGCCTTTATCGCCCTCGGGGCGGGGAAAAAAAa                     >  1:15051438/1‑34
               CACGCCTTTATCGCCCTCGGGGCGGGAAAAAAAAc                     >  1:16779729/1‑34
                ACGCCTTTATCGCCCTCGGGGCGGGGAAAAAAAca                    >  1:12542969/1‑33
                ACGCCTTTATCGCCCTCGGGGCGGGGAAAAAAAca                    >  1:2710176/1‑33
                ACGCCTTTATCGCCCTCGGGGCGGGGAAAAAAAaa                    >  1:16835855/1‑33
                 CGCCTTTATCGCCCTCGGGGCGGGGAAAAAAAcaa                   >  1:19771969/1‑32
                                  GGGCGGGGAAAAAAATGCCATAGGCGGCATTTTCC  <  1:4431046/35‑1
                                                                     
GTCTGGGGGATCATGCACGCCTTTATCGCCCTCGGGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/756470‑756509
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcggGGAAAAAAATGCCATCGGCGGCATTTTCC  >  REL606/1539626‑1539654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.