New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 365501 =115 (1.120)5 (0.060) 3/40 NT 6.1% coding (1217/1221 nt) sbmA predicted transporter
?REL606 = 3726074 57 (0.670)coding (49/1545 nt) yibO phosphoglyceromutase

Only 100 of 231 total aligned reads displayed.

GGTGACAAAATTCAGGAAGTAACCCATACCTTGAGCTAAAAAGGAGAAGTAATGTCGCGCGTCAATCCT  >  REL606/365467‑365535
                                  |                                  
ggTGACAAAATTCAGGAAGTAACCCATACCTTGAg                                    >  1:17276410/1‑35 (MQ=255)
ggTGACAAAATTCAGGAAGTAACCCATACCTTGAg                                    <  1:12607316/35‑1 (MQ=255)
ggTGACAAAATTCAGGAAGTAACCCATACCTTGAg                                    >  1:7876293/1‑35 (MQ=255)
aaacctatggtactggtgattctggatggctatgg                                    >  1:18226268‑M1/35‑35 (MQ=255)
aaacctatggtactggtgattctggatggctatgg                                    >  1:6745865‑M1/35‑35 (MQ=255)
aaacctatggtactggtgattctggatggctatgg                                    >  1:14188222‑M1/35‑35 (MQ=255)
 gTGACAAAATTCAGGAAGTAACCCATACCTTGAGc                                   >  1:2215647/1‑35 (MQ=255)
 gTGACAAAATTCAGGAAGTAACCCATACCTTGAGc                                   <  1:2612850/35‑1 (MQ=255)
 gTGACAAAATTCAGGAAGTAACCCATACCTTGAGc                                   <  1:861397/35‑1 (MQ=255)
 gTGACAAAATTCAGGAAGTAACCCATACCTTGAGc                                   <  1:7348722/35‑1 (MQ=255)
 aacctatggtactggtgattctggatggctatggc                                   >  1:1536955‑M1/34‑35 (MQ=255)
 aacctatggtactggtgattctggatggctatggc                                   <  1:12087621‑M1/2‑1 (MQ=255)
 aacctatggtactggtgattctggatggctatggc                                   >  1:13070369‑M1/34‑35 (MQ=255)
  tGACAAAATTCAGGAAGTAACCCATACCTTGAGCt                                  <  1:20183658/35‑1 (MQ=255)
  tGACAAAATTCAGGAAGTAACCCATACCTTGAGCt                                  >  1:19953207/1‑35 (MQ=255)
  tGACAAAATTCAGGAAGTAACCCATACCTTGAGCt                                  >  1:13155119/1‑35 (MQ=255)
  acctatggtactggtgattctggatggctatgggt                                  <  1:2515620‑M1/3‑3 (MQ=255)
  acctatggtactggtgattctggatggctatggct                                  <  1:11883301‑M1/3‑1 (MQ=255)
  acctatggtactggtgattctggatggctatggct                                  <  1:13225122‑M1/3‑1 (MQ=255)
  acctatggtactggtgattctggatggctatggct                                  <  1:18911531‑M1/3‑1 (MQ=255)
   gACAAAATTCAGGAAGTAACCCATACCTTGAGCTa                                 <  1:5924127/35‑1 (MQ=255)
   gACAAAATTCAGGAAGTAACCCATACCTTGAGCTa                                 <  1:16364577/35‑1 (MQ=255)
   cctatggtactggtgattctggatggctatggcta                                 >  1:8422214‑M1/32‑35 (MQ=255)
   catatggtactggtgattctggatggctatggcta                                 >  1:8285652‑M1/32‑35 (MQ=255)
    aCAAAATTCAGGAAGTAACCCATACCTTGAGCTaa                                <  1:17826414/35‑1 (MQ=255)
     cAAAATTCAGGAAGTAACCTATACCTTGAGCTaaa                               <  1:15894542/35‑1 (MQ=255)
     cAAAATTCAGGAAGTAACCCATACCTTGAGCTaaa                               <  1:5824758/35‑1 (MQ=255)
     cAAAATTCAGGAAGTAACCCATACCTTGAGCTaaa                               >  1:16843504/1‑35 (MQ=255)
     cAAAATTCAGGAAGTAACCCATACCTTGAGCTaaa                               <  1:10061904/35‑1 (MQ=255)
      atggtactggtgattctggatggctatgGCTaaaa                              <  1:14808048‑M1/7‑1 (MQ=255)
      atggtactggtgattctggatggctatgGCTaaaa                              <  1:6843407‑M1/7‑1 (MQ=255)
      atggtactggtgattctggatggctatgGCTaaaa                              <  1:11576618‑M1/7‑1 (MQ=255)
      aaaaTTCAGGAAGTAACCCATACCTTGAGCTaaaa                              >  1:6344859/1‑35 (MQ=255)
       aaaTTCAGGAAGTAACCCATACCTTGAGCTaaaaa                             <  1:1854257/35‑1 (MQ=255)
       aaaTTCAGGAAGTAACCCATACCTTGAGCTaaaaa                             <  1:6123107/35‑1 (MQ=255)
       aaaTTCAGGAAGTAACCCATACCTTGAGCTaaaaa                             >  1:13352991/1‑35 (MQ=255)
        aaTTCAGGAAGTAACCCATACCTTGAGCTAAAAAg                            <  1:18870114/35‑1 (MQ=255)
         aTTCAGGAAGTAACCCATACCTTGAGCTAAAAAgg                           <  1:13787909/35‑1 (MQ=255)
          ttCAGGAAGTAACCCATACCTTGAGCTAAAAAGga                          <  1:10803639/35‑1 (MQ=255)
          ttCAGGAAGTAACCCATACCTTGAGCTAAAAAGga                          >  1:3201696/1‑35 (MQ=255)
          tactggtgattctggatggctatgGCTAAAaagaa                          <  1:9252627‑M1/11‑3 (MQ=255)
          tactggtgattctggatggctatgGCTAAAaagaa                          <  1:18378934‑M1/11‑3 (MQ=255)
           tCAGGAAGTAACCCATACCTTGAGCTAAAAAGgag                         >  1:4745081/1‑35 (MQ=255)
           actggtgattctggatggctatgGCTAAAAAggaa                         <  1:10012098‑M1/12‑2 (MQ=255)
           actggtgattctggatggctatgGCTAAAAAGgag                         <  1:8732291‑M1/12‑1 (MQ=255)
            cAGTAAGTAACCCATACCTTGAGCTAAAAAGgaga                        >  1:14293559/1‑35 (MQ=255)
            cAGGAAGTAACCCATACCTTGAGCTAAAAAGgaga                        <  1:17649675/35‑1 (MQ=255)
            cAGGAAGTAACCCATACCTTGAGCTAAAAAGgaga                        >  1:17341384/1‑35 (MQ=255)
            cAGGAAGTAACCCATACCTTGAGCTAAAAAGgaga                        >  1:11449899/1‑35 (MQ=255)
             tggtgattctggatggctatgGCTAAAAAGGAGaa                       <  1:2803368‑M1/14‑1 (MQ=255)
              ggAAGTAACCCATACCTTGAGCTAAAAAGGAGAAg                      <  1:5813108/35‑1 (MQ=255)
               gAAGTAACCCATACCTTGAGCTAAAAAGGAGAAGt                     <  1:4026743/35‑1 (MQ=255)
               gAAGTAACCCATACCTTGAGCTAAAAAGGAAAGTa                    <  1:3070367/35‑1 (MQ=255)
                aaGTAACCCATACCTTGAGCTAAAAAGGAGAAGTa                    >  1:10551048/1‑35 (MQ=255)
                 aGTAACCCATACCTTGAGCTAAAAAGGAGAAGTaa                   <  1:9611168/35‑1 (MQ=255)
                 aGTAACCCATACCTTGAGCTAAAAAGGAGAAGTaa                   <  1:1039723/35‑1 (MQ=255)
                 aGTAACCCATACCTTGAGCTAAAAAGGAGAAGTaa                   <  1:10598061/35‑1 (MQ=255)
                  gTAACCCATACCTTGAGCTAAAAAGGAGAAGTAAt                  <  1:16210397/35‑1 (MQ=255)
                   tAACCCATACCTTGAGCTAAAAAGGAGAAGTAATg                 >  1:8498660/1‑35 (MQ=255)
                   tAACCCATACCTTGAGCTAAAAAGGAGAAGTAATg                 >  1:13968219/1‑35 (MQ=255)
                    aaCCCATACCTTGAGCTAAAAAGGAGAAGTAATgc                <  1:8799995/35‑2 (MQ=255)
                    aaCCCATACCTTGAGCTAAAAAGGAGAAGTAATGt                >  1:9365649/1‑35 (MQ=255)
                    aaCCCATACCTTGAGCTAAAAAGGAGAAGTAATGt                <  1:18826126/35‑1 (MQ=255)
                     aCCCATACCTTGAGCTAAAAAGGAGAAGTAATGTc               <  1:19255893/35‑1 (MQ=255)
                     aCCCATACCTTGAGCTAAAAAGGAGAAGTAATGTc               <  1:15219575/35‑1 (MQ=255)
                      cccATACCTTGAGCTAAAAAGGAGAAGTAATGTcg              <  1:10220271/35‑1 (MQ=255)
                      cccATACCTTGAGCTAAAAAGGAGAAGTAATGTcg              <  1:19110788/35‑1 (MQ=255)
                      cccATACCTTGAGCTAAAAAGGAGAAGTAATGTcg              <  1:16914862/35‑1 (MQ=255)
                      cccATACCTTGAGCTAAAAAGGAGAAGTAATGTcg              >  1:5123618/1‑35 (MQ=255)
                      cccATACCTTGAGCTAAAAAGGAGAAGTAATGTcg              <  1:4917581/35‑1 (MQ=255)
                       ccATACCTTGAGCTAAAAAGGAGAAGTAATGTggc             <  1:18021292/35‑1 (MQ=255)
                       ccATACCTTGAGCTAAAAAGGAGAAGTAATGTcgc             >  1:17143006/1‑35 (MQ=255)
                       ccATACCTTGAGCTAAAAAGGAGAAGTAATGTcgc             >  1:5085165/1‑35 (MQ=255)
                       ccATACCTTGAGCTAAAAAGGAGAAGTAATGTcgc             <  1:12532050/35‑1 (MQ=255)
                       ccATACCTTGAGCTAAAAAGGAGAAGTAATCTcgc             >  1:6541031/1‑35 (MQ=255)
                        cATACCTTGAGCTAAAAAGGAGAAGTAATGTcgcg            <  1:1109189/35‑1 (MQ=255)
                        cATACCTTGAGCTAAAAAGGAGAAGTAATGTcgcg            <  1:19332295/35‑1 (MQ=255)
                        aaTACCTTGAGCTAAAAAGGAGAAGTAATGTcgcg            <  1:15733790/34‑1 (MQ=255)
                         aTACCTTGAGCTAAAAAGGAGAAGTAATGTcgcgc           <  1:7439702/35‑1 (MQ=255)
                         aTACCTTGAGCTAAAAAGGAGAAGTAATGTcgcgc           <  1:5174366/35‑1 (MQ=255)
                          tACCTTGAGCTAAAAAGGAGAAGTAATGTcgcgcg          >  1:1975477/1‑35 (MQ=255)
                          tACCTTGAGCTAAAAAGGAGAAGTAATGTcgcgcg          <  1:16514567/35‑1 (MQ=255)
                           aCCTTGAGCTAAAAAGGAGAAGTAATGTCGCGCGt         >  1:13017679/1‑35 (MQ=255)
                            ccTTGAGCTAAAAAGGAGAAGTAATGTCGCGCGTc        >  1:7229943/1‑35 (MQ=255)
                            ccTTGAGCTAAAAAGGAGAAGTAATGTCGCGCGTc        >  1:4470123/1‑35 (MQ=255)
                             cTTGAGCTAAAAAGGAGAAGTAATGTCTCGCGTCa       >  1:3840618/1‑35 (MQ=255)
                             cTTGAGCTAAAAAGGAGAAGTAATGTCGCGCGTCa       <  1:7516546/35‑1 (MQ=255)
                             cTTGAGCTAAAAAGGAGAAGTAATGTCGCGCGTCa       <  1:6963767/35‑1 (MQ=255)
                             cTTGAGCTAAAAAGGAGAAGTAATGTCGCGCGTCa       <  1:10856543/35‑1 (MQ=255)
                              ttGAGCTAAAAAGGAGAAGTAATGTCGCGCGTCaa      <  1:13296533/35‑1 (MQ=255)
                              ttGAGCTAAAAAGGAGAAGTAATGTCGCGCGTCaa      <  1:2641137/35‑1 (MQ=255)
                               tGAGCTAAAAAGGAGAAGTAATGTCGCGCGTCAAt     >  1:244998/1‑35 (MQ=255)
                                gAGCTAAAAAGGAGAAGTAATGTCGCGCGTCAATc    <  1:7431186/35‑1 (MQ=255)
                                gAGCTAAAAAGGAGAAGTAATGTCGCGCGTCAATc    <  1:3719657/35‑1 (MQ=255)
                                gAGCTAAAAAGGAGAAGTAATGTCGCGCGTCAATc    <  1:16666710/35‑1 (MQ=255)
                                 aGCTAAAAAGGAGAAGTAATGTCGCGCGTCAATcc   >  1:524744/1‑35 (MQ=255)
                                 aGCTAAAAAGGAGAAGTAATGTCGCGCGTCAATcc   <  1:18668176/35‑1 (MQ=255)
                                 aGCTAAAAAGGAGAAGTAATGTCGCGCGTCAATcc   <  1:8970379/35‑1 (MQ=255)
                                  GCTAAAAAGGAGAAGTAATGTCGCGCGTCAATCct  >  1:3547082‑M1/1‑35 (MQ=255)
                                  GCTAAAAAGGAGAAGTAATGTCGCGCGTCAATCct  <  1:2354122‑M1/35‑1 (MQ=255)
                                  |                                  
GGTGACAAAATTCAGGAAGTAACCCATACCTTGAGCTAAAAAGGAGAAGTAATGTCGCGCGTCAATCCT  >  REL606/365467‑365535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.