New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1306326 =88 (0.860)10 (0.170) 3/28 NT 18.1% intergenic (‑87/+284) cls/kch cardiolipin synthetase/voltage‑gated potassium channel
?REL606 = 2380515 39 (0.650)coding (929/1137 nt) pdxB erythronate‑4‑phosphate dehydrogenase

Only 100 of 199 total aligned reads displayed.

CATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGCGGGGGTATAATGACCATTC  >  REL606/1306292‑1306358
                                  |                                
cggcgcacatcatacaccaaatgcaccagcctttt                                  <  1:14938720‑M1/1‑1 (MQ=255)
 ggcgcacatcatacaccaaatgcaccagcctttTc                                 >  1:9517762‑M1/34‑35 (MQ=255)
 aTCTGGCAAATAAAAACGCGGGAAAAGCACTGGTc                                 <  1:4051194/35‑1 (MQ=255)
 aTCTGGCAAATAAAAACGCGGGAAAAGCACTGGTc                                 <  1:4280623/35‑1 (MQ=255)
 aTCTGGCAAATAAAAACGCGGGAAAAGCACTGGTc                                 >  1:4529584/1‑35 (MQ=255)
  tCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCa                                <  1:16788840/35‑1 (MQ=255)
  tCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCa                                <  1:871400/35‑1 (MQ=255)
  tCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCa                                <  1:14480699/35‑1 (MQ=255)
  tCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCa                                <  1:14398327/35‑1 (MQ=255)
  tCTAGCAAATAAAAACGCGGGAAAAGCACTGGTCa                                <  1:14570293/35‑1 (MQ=255)
  gcgcacatcatacaccaaatgcaccagcctttTCa                                >  1:5328430‑M1/33‑35 (MQ=255)
  gcgcacatcatacaccaaatgcaccagcctttTCa                                <  1:20551576‑M1/3‑1 (MQ=255)
   cgcacatcatacaccaaatgcaccagcctttTCAg                               <  1:10649232‑M1/4‑1 (MQ=255)
   cgcacatcatacaccaaatgcaccagcctttTCAg                               >  1:14150806‑M1/32‑35 (MQ=255)
   cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAg                               <  1:15308929/35‑1 (MQ=255)
   cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAg                               <  1:15338593/35‑1 (MQ=255)
   cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAg                               >  1:18218715/1‑35 (MQ=255)
    tGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGc                              >  1:19103732/1‑35 (MQ=255)
    tGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGc                              >  1:2355051/1‑35 (MQ=255)
    gcacatcatacaccaaatgcaccagcctttTCAGc                              >  1:18722131‑M1/31‑35 (MQ=255)
    gcacatcatacaccaaatgcaccagcctttTCAGc                              >  1:12818719‑M1/31‑35 (MQ=255)
    gcacatcatacaccaaatgcaccagcctttTCAGc                              >  1:2902803‑M1/31‑35 (MQ=255)
    gcacatcatacaccaaatgcaccagcctttTCAGc                              >  1:11029556‑M1/31‑35 (MQ=255)
     ggCAAATAAAAACGCGGGAAAAGCACTGGTCAGCg                             <  1:13556982/35‑1 (MQ=255)
     ggCAAATAAAAACGCGGGAAAAGCACTGGTCAGCg                             >  1:17275964/1‑35 (MQ=255)
     ggCAAATAAAAACGCGGGAAAAGCACTGGTCAGCg                             >  1:11500006/1‑35 (MQ=255)
     ggCAAATAAAAACGCGGGAAAAGCACTGGTCAGCg                             >  1:16392293/1‑35 (MQ=255)
      gCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGt                            <  1:17766402/35‑1 (MQ=255)
      gCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGt                            >  1:14352045/1‑35 (MQ=255)
      gCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGt                            <  1:20129171/35‑1 (MQ=255)
      gCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGt                            >  1:7975748/1‑35 (MQ=255)
      acatcatactccaaatgcaccagcctttTCAGCGt                            <  1:15609913‑M1/7‑1 (MQ=255)
      acatcatacaccaaatgcaccagcctttTCAGCGt                            >  1:7286466‑M1/29‑35 (MQ=255)
      acatcatacaccaaatgcaccagcctttTCAGCGt                            <  1:10092681‑M1/7‑1 (MQ=255)
       catcatacaccaaatgcaccagcctttTCAGCGTc                           >  1:7030355‑M1/28‑35 (MQ=255)
       catcatacaccaaatgcaccagcctttTCAGCGTc                           >  1:3731328‑M1/28‑35 (MQ=255)
       cAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTc                           >  1:2176234/1‑35 (MQ=255)
       cAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTc                           <  1:10339804/35‑1 (MQ=255)
       cAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTc                           <  1:2653047/35‑1 (MQ=255)
       cAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTc                           >  1:5600474/1‑35 (MQ=255)
       cAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTc                           <  1:17448844/35‑1 (MQ=255)
        atcatacaccaaatgcaccggcctttTCAGCGTcg                          >  1:163039‑M1/27‑35 (MQ=255)
        atcatacaccaaatgcaccagcctttTCAGCGTcg                          >  1:14885115‑M1/27‑35 (MQ=255)
        aaaTAAAAACGCGGGAAAAGCACTGGTCAGCGTcg                          <  1:13114319/35‑1 (MQ=255)
        aaaTAAAAACGCGGGAAAAGCACTGGTCAGCGTcg                          <  1:11226190/35‑1 (MQ=255)
        aaaTAAAAACGCGGGAAAAGCACTGGTCAGCGTcg                          <  1:5271978/35‑1 (MQ=255)
        aaaTAAAAACGCGGGAAAAGCACTGGTCAGCGTcg                          <  1:10143958/35‑1 (MQ=255)
         tcatacaccaaatgcaccagcctttTCAGCgtctg                         <  1:13382392‑M1/10‑3 (MQ=255)
         tcatacaccaaatgcaccagcctttTCAGCGTcgg                         <  1:16423013‑M1/10‑1 (MQ=255)
         aaTAAAAACGCGGGAAAAGCACTGGTCAGCGTcgg                         >  1:13264254/1‑35 (MQ=255)
         aaTAAAAACGCGGGAAAAGCACTGGTCAGCGTcgg                         <  1:19485758/35‑1 (MQ=255)
          aTAAAAACGCGGGAAAAGCACTGGTCAGCGTcggg                        >  1:12035878/1‑35 (MQ=255)
          aTAAAAACGCGGGAAAAGCACTGGTCAGCGTcggg                        >  1:15910464/1‑35 (MQ=255)
           tAAAAACGCGGGAAAAGCACTGGTCAGCGTcgggg                       <  1:11648226/35‑1 (MQ=255)
            tacaccaaatgcaccagcctttTCAGCGTcggggg                      <  1:7541054‑M1/13‑1 (MQ=255)
            aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggt                      >  1:2269612/1‑34 (MQ=255)
            aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggg                      <  1:8365631/35‑1 (MQ=255)
            aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggg                      >  1:14483045/1‑35 (MQ=255)
            aaaaaCGCGGGAAAAGCACTGGTCAGCGTcggggg                      >  1:4642502/1‑35 (MQ=255)
             acaccaaatgcaccagcctttTCAGCGtcgggggg                     <  1:15680245‑M1/14‑2 (MQ=255)
             aaaaCGCGGGAAAAGCACTGGTCAGCGTcgggggc                     >  1:10606831/1‑35 (MQ=255)
               accaaatgcaccagcctttTCAGcgtcgggggggg                   <  1:12582524‑M1/16‑4 (MQ=255)
               aaCGCGGGAAAAGCACTGGTCAGCGTcgggggcgg                   <  1:15475852/35‑1 (MQ=255)
               aaCGCGGGAAAAGCACTGGTCAGCGTcgggggcgg                   >  1:5020385/1‑35 (MQ=255)
                ccaaatgcaccagcctttTCAGCGTcggggggggg                  <  1:5101163‑M1/17‑1 (MQ=255)
                ccaaatgcaccagcctttTCAGCGTcggggggggg                  <  1:1078414‑M1/17‑1 (MQ=255)
                aCGCGGGAAAAGCACTGGTCAGCGTcgggggcggg                  >  1:3147209/1‑35 (MQ=255)
                aCGCGGGAAAAGCACTGGTCAGCGTcgggggcggg                  <  1:7654821/35‑1 (MQ=255)
                 cgcgGGAAAAGCACTGGTCAGCGTcgggggcgggg                 <  1:19347200/35‑1 (MQ=255)
                 cgcgGGAAAAGCACTGGTCAGCGTcgggggcgggg                 >  1:9266384/1‑35 (MQ=255)
                 caaatgcaccagcctttTCAGCGTcgggggggggg                 <  1:8994798‑M1/18‑1 (MQ=255)
                 caaatgcaccagcctttTCAGCGTcgggggggggg                 <  1:12209947‑M1/18‑1 (MQ=255)
                  gcgGGAAAAGCACTGGTCAGCGTcgggggcggggg                >  1:19770947/1‑35 (MQ=255)
                  gcgGGAAAAGCACTGGTCAGCGTcgggggcggggg                <  1:18372810/35‑1 (MQ=255)
                  gcgGGAAAAGCACTGGTCAGCGTcgggggcggggg                <  1:17996145/35‑1 (MQ=255)
                  aaatgcaccagcctttTCAGCGTcggggggggggg                <  1:6445589‑M1/19‑1 (MQ=255)
                   cgGGAAAAGCACTGGTCAGCGTcgggggcgggggg               >  1:5136936/1‑34 (MQ=255)
                   aatgcaccagcctttTCAGCGtcgggggtgggggg               <  1:13009705‑M1/20‑2 (MQ=255)
                   aatgcaccagcctttTCAGCGtcgggggggggggg               <  1:6320816‑M1/20‑2 (MQ=255)
                     ggAAAAGCACTGGTCAGCGTCGGGGGCGGGGGtat             <  1:3489578/35‑1 (MQ=255)
                      gAAAAGCACTGGTCAGCGTCGGGGGCGGGGGtata            <  1:19177848/35‑1 (MQ=255)
                      gAAAAGCACTGGTCAGCGTCGGGGGCGGGGGtata            <  1:2007744/35‑1 (MQ=255)
                       aaaaGCACTGGTCAGCGTCGGGGGCGGGGGTATaa           <  1:16690718/35‑1 (MQ=255)
                        aaaGCACTGGTCAGCGTCGGGGGCGGGGGTATAAt          >  1:6665616/1‑35 (MQ=255)
                        aaaGCACTGGTCAGCGTCGGGGGCGGGGGGATAAt          >  1:9166935/1‑35 (MQ=255)
                        aaaGCACTGGTCAGCGTCGGGGGCGGGGGGATAAt          >  1:7220166/1‑35 (MQ=255)
                         aaGCACTGGTCAGCGTCGGGGGCGGGGGTATAATg         <  1:8559725/35‑1 (MQ=255)
                         aaGCACTGGTCAGCGTCGGGGGCGGGGGGATAATg         >  1:20117531/1‑35 (MQ=255)
                         aaGCACTGGTCAGCGTCGGGGGCGGGGGGATAATg         >  1:8178857/1‑35 (MQ=255)
                          aGCACTGGTCAGCGTCGGGGGCGGGGGTATAATGa        <  1:6617072/35‑1 (MQ=255)
                          aGCACTGGTCAGCGTCGGGGGCGGGGGGATAAAGa        >  1:20581550/1‑35 (MQ=37)
                           gCACTGGTCAGCGTCGGGGGCGGGGGTATAATGAc       <  1:12684086/35‑1 (MQ=255)
                            cACTGGTCAGCGTCGGGGGCGGGGGTATAATGAcc      <  1:19552105/35‑1 (MQ=255)
                            cACTGGTCAGCGTCGGGGGCGGGGGGATAATGAcc      >  1:7816336/1‑35 (MQ=255)
                             aCTGGTCAGCGTCGGGGGCGGGGGTATAATGACCa     <  1:19838666/35‑1 (MQ=255)
                             aCTGGTCAGCGTCGGGGGCGGGGGTATAATGACCa     <  1:17393285/35‑1 (MQ=255)
                              cTGGTCAGCGTCGGGGGCGGGGGTATAATGACCAt    <  1:15799598/35‑1 (MQ=255)
                              cTGGTCAGCGTCGGGGGCGGGGGTATAATGACCAt    <  1:3566892/35‑1 (MQ=255)
                              cTGGTCAGCGTCGGGGGCGGGGGTATAATGAACAt    <  1:1026223/35‑1 (MQ=255)
                                ggTCAGCGTCGGGGGCGGGGGGATAATTACCAttt  >  1:19236985/1‑34 (MQ=37)
                                  |                                
CATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGCGGGGGTATAATGACCATTC  >  REL606/1306292‑1306358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.