New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2880569 =60 (0.580)11 (0.140) 4/36 NT 19.1% coding (101/1230 nt) yqeG predicted transporter
?REL606 3287064 = 48 (0.620)coding (1197/2337 nt) arcB hybrid sensory histidine kinase in two‑component regulatory system with ArcA

Only 100 of 126 total aligned reads displayed.

GCAGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGTTTATTACTGCTCTG  >  REL606/2880535‑2880603
                                  |                                  
accgcatcaggtcattaccgacgggacgcgtttac                                    <  1:6005754‑M1/1‑1 (MQ=255)
accgcatcaggtcattaccgacgggacgcgtttac                                    <  1:835696‑M1/1‑1 (MQ=255)
accgcatcaggtcattaccgacgggacgcgtttac                                    <  1:1905398‑M1/1‑1 (MQ=255)
accgcatcaggtcattaccgacgggacgcgtttac                                    <  1:2000805‑M1/1‑1 (MQ=255)
 ccgcatcaggtcattaccgacgggacgcgtttaCg                                   <  1:18605720‑M1/2‑1 (MQ=255)
 cAGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCg                                   <  1:8362677/35‑1 (MQ=255)
 cAGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCg                                   >  1:7436914/1‑35 (MQ=255)
 cAGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCg                                   >  1:2718022/1‑35 (MQ=255)
  cgcatcaggtcattcccgacgggacgcgtttaCgg                                  >  1:12715676‑M1/33‑35 (MQ=255)
  cgcatcaggtcattcccgacgggacgcgtttaCgg                                  >  1:16058615‑M1/33‑35 (MQ=255)
  cgcatcaggtcattaccgacgggacgcgtttaCgg                                  >  1:418492‑M1/33‑35 (MQ=255)
  aGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCgg                                  >  1:12358327/1‑35 (MQ=255)
  aGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCgg                                  >  1:14976152/1‑35 (MQ=255)
  aGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCgg                                  >  1:7107511/1‑35 (MQ=255)
  aGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCgg                                  <  1:7826302/35‑1 (MQ=255)
  aGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCgg                                  >  1:17561328/1‑35 (MQ=255)
   ggCACGCTCTTCCTTCCTATTCAGTTAGGTTCGGc                                 >  1:12152018/1‑35 (MQ=255)
    gCACGCTCTTCCTTGCTATTCAGTTAGGTTCGGCa                                <  1:13727128/35‑1 (MQ=255)
    gCACGCTCTTCCTTCCTATTCAGTTAGGTTCGGCa                                <  1:8386181/35‑1 (MQ=255)
    gCACGCTCTTCCTTCCTATTCAGTTAGGTTCGGCa                                >  1:15875393/1‑35 (MQ=255)
    catcaggtcattaccgacgggacgcgtttaCGGCa                                <  1:20391470‑M1/5‑1 (MQ=255)
     cACGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAg                               >  1:16396092/1‑35 (MQ=255)
     atcgggtcattaccgacgggacgcgtttaCGGCAg                               >  1:14437258‑M1/30‑35 (MQ=255)
     atcaggtcattaccgacgggacgcgtttaCGGCAg                               <  1:12452400‑M1/6‑1 (MQ=255)
     atcaggtcattaccgacgggacgcgtttaCGGCAg                               <  1:11907427‑M1/6‑1 (MQ=255)
     atcaggtcattaccgacgggacgcgtttaCGGCAg                               <  1:4450937‑M1/6‑1 (MQ=255)
     atcaggtcattaacgacgggacgcgtttaCGGCAg                               >  1:18477769‑M1/30‑35 (MQ=255)
      tcaggtcattaccgacgggacgcgtttaCGGCAgg                              <  1:18274853‑M1/7‑1 (MQ=255)
      tcaggtcattaccgacgggacgcgtttaCGGCAgg                              <  1:11398269‑M1/7‑1 (MQ=255)
      aCGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgg                              >  1:7507881/1‑35 (MQ=255)
      aCGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgg                              <  1:16414808/35‑1 (MQ=255)
      aCGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgg                              >  1:14658068/1‑35 (MQ=255)
      aCGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgg                              >  1:16253692/1‑35 (MQ=255)
      aCGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgg                              <  1:7110621/35‑1 (MQ=255)
      aCGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgg                              >  1:414971/1‑35 (MQ=255)
       caggtcattaccgacgggacgcgtttaCGGCAggg                             <  1:15579451‑M1/8‑1 (MQ=255)
       caggtcattaccgacgggacgcgtttaCGGCAggg                             <  1:20347724‑M1/8‑1 (MQ=255)
       caggtcattaccgacgggacgcgtttaCGGCAggg                             <  1:2335118‑M1/8‑1 (MQ=255)
       cGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAggg                             >  1:19544144/1‑35 (MQ=255)
        gCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgggg                            >  1:17146836/1‑35 (MQ=255)
         ctctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGc                           <  1:159344/35‑1 (MQ=255)
         ctctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGc                           >  1:7721532/1‑35 (MQ=255)
         ctctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGc                           >  1:5826986/1‑35 (MQ=255)
          tctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGCt                          <  1:15782818/35‑1 (MQ=255)
          tctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGCt                          <  1:19319488/35‑1 (MQ=255)
          tctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGCt                          <  1:13645693/35‑1 (MQ=255)
          tctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGCt                          <  1:6445023/35‑1 (MQ=255)
          gtcattaccgacgggacgcgtttaCGgcagggacc                          <  1:6724584‑M1/11‑4 (MQ=255)
           tcattaccgacgggacgcgtttaCGGCAGGggccg                         <  1:1350822‑M1/12‑3 (MQ=255)
           tcattaccgacgggacgcgtttaCGGCAGGggccc                         <  1:18002285‑M1/12‑3 (MQ=255)
           tcattaccgacgggacgcgtttaCGGCAGGGGCtg                         <  1:12085552‑M1/12‑1 (MQ=255)
            ttccttccTATTCAGTTAGGTTCGGCAGGGGCtgt                        <  1:4727930/35‑1 (MQ=255)
            ttccttccTATTCAGTTAGGTTCGGCAGGGGCtgg                        >  1:12644220/1‑34 (MQ=255)
            cattaccgacgggacgcgtttaCGGCAGGGGctgg                        <  1:52181‑M1/13‑2 (MQ=255)
            cattaccgacgggacgcgtttaCGGCAGGGGCtgt                        <  1:16954208‑M1/13‑1 (MQ=255)
             tccttcctATTCAGTTAGGTTCGGCAGGGGCtgtg                       <  1:12663510/35‑1 (MQ=255)
             tccttcctATTCAGTTAGGTTCGGCAGGGGCtgtg                       <  1:14007370/35‑1 (MQ=255)
             tccttcctATTCAGTTAGGTTCGGCAGGGGCtggg                       >  1:15913371/1‑33 (MQ=255)
             attaccgacgggacgcgtttaCGGCAGGGgctggg                       <  1:6864622‑M1/14‑3 (MQ=255)
             attaccgacgggacgcgtttaCGGCAGGGGCtgtg                       <  1:5312267‑M1/14‑1 (MQ=255)
              ttaccgacgggacgcgtttaCGGCAGGggctgggg                      <  1:12764582‑M1/15‑4 (MQ=255)
              ttaccgacgggacgcgtttaCGGCAGGGGCTGTgg                      <  1:3544434‑M1/15‑1 (MQ=255)
               taccgacgggacgcgtttaCGGCAGGGCCTGtggg                     <  1:15580750‑M1/16‑2 (MQ=255)
               cttcctATTCAGTTAGGTTCGGCAGGGGCTGTGGt                     <  1:20609870/35‑1 (MQ=255)
               cttcctATTCAGTTAGGTTCGGCAGGGGCTGTGGt                     <  1:2859243/35‑1 (MQ=255)
               cttcctATTCAGTTAGGTTCGGCAGGGGCTGGggg                     >  1:10419775/1‑34 (MQ=255)
               cttcctATTCAGTTAGGTTCGGCAGGGGCTGGggg                     >  1:11664105/1‑34 (MQ=255)
                ttcctATTCAGTTAGGTTCGGCAGGGGCTGGgggg                    >  1:14519935/1‑33 (MQ=38)
                accgacgggacgcgtttaCGGCAGGGGCTgtggga                    <  1:11471076‑M1/17‑3 (MQ=255)
                accgacgggacgcgtttaCGGCAGGGGCTgtggga                    <  1:2308832‑M1/17‑3 (MQ=255)
                 tcctATTCAGTTAGGTTCGGCAGGGGCTGTGGTcc                   <  1:14001375/35‑1 (MQ=255)
                 tcctATTCAGTTAGGTTCGGCAGGGGCTGGggggg                   >  1:4507652/1‑32 (MQ=38)
                  cctATTCAGTTAGGTTCGGCAGGGGCTGTGGTCCt                  <  1:1130009/35‑1 (MQ=255)
                   ctATTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTg                 <  1:19808905/35‑1 (MQ=255)
                   ctATTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTg                 <  1:16573088/35‑1 (MQ=255)
                    tATTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGt                <  1:1406563/35‑1 (MQ=255)
                     aTTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGtt               <  1:1585395/35‑1 (MQ=255)
                     aTTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGtt               <  1:10671720/35‑1 (MQ=255)
                     aTTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGtt               <  1:17788632/35‑1 (MQ=255)
                      ttCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGttt              <  1:2189449/35‑1 (MQ=255)
                      ttCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGttt              <  1:13880820/35‑1 (MQ=255)
                      ttCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGttt              <  1:10858524/35‑1 (MQ=255)
                       tCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGTtta             <  1:12027624/35‑1 (MQ=255)
                        cAGTTAGGTTCGGCAGGGGCTGTGGTCCTGTttat            <  1:9141825/35‑1 (MQ=255)
                        cAGTTAGGTTCGGCAGGGGCTGTGGTCCTGTttat            <  1:9668827/35‑1 (MQ=255)
                        cAGTTAGGTTCGGCAGGGGCTGTGGTCCTGTttat            <  1:17667897/35‑1 (MQ=255)
                        cAGTTAGGTTCAGCAGGGGCTGTGGTCCTGTttat            <  1:12043009/35‑1 (MQ=255)
                         aGTTAGGTTCGGCAGGGGCTGTGGTCCTGTttatt           <  1:6548055/35‑1 (MQ=255)
                         aGTTAGGTTCGGCAGGGGCTGTGGTCCTGTttatt           <  1:16721530/35‑1 (MQ=255)
                         aGTTAGGTTCGGCAGGGGCTGTGGTCCTGTttatt           <  1:10189851/35‑1 (MQ=255)
                          gTTAGGTTCGGCAGGGGCTGTGGTCCTGTttatta          <  1:20034928/35‑1 (MQ=255)
                          gTTAGGTTCGGCAGGGGCTGTGGTCCTGTttatta          <  1:190488/35‑1 (MQ=255)
                           ttAGGTTCGGCAGGGGCTGTGGTCCTGTTTATTAc         <  1:8123182/35‑1 (MQ=255)
                            tAGGTTCGGCAGGGGCTGTGGTCCTGTTTATTACt        <  1:631163/35‑1 (MQ=255)
                               gTTCGGCAGGGGCTGTGGTCCTGTTTATTACTGct     <  1:9469420/35‑1 (MQ=255)
                                ttCGGCAGGGGCTGTGGTCCTGTTTATTACTGctc    <  1:3992254/35‑1 (MQ=255)
                                ttCGGCAGGGGCTGTGGTCCTGTTTATTACTGctc    <  1:12353155/35‑1 (MQ=255)
                                 tCGGCAGGGGCTGTGGTCCTGTTTATTACTGctct   <  1:7018447/35‑1 (MQ=255)
                                  CGGCAGGGGCTGTGGTCCTGTTTATTACTGCTCTg  >  1:19284041‑M1/1‑35 (MQ=255)
                                  CGGCAGGGGCTGTGGTCCTGTTTATTACTGCTCTg  >  1:15725580‑M1/1‑35 (MQ=255)
                                  |                                  
GCAGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGTTTATTACTGCTCTG  >  REL606/2880535‑2880603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.