New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 75650964 (0.620)16 (0.210) 4/36 NT 23.0% coding (475/693 nt) tolQ membrane spanning protein in TolA‑TolQ‑TolR complex
?REL606 1539626 = 59 (0.770)coding (46/2400 nt) dos cAMP phosphodiesterase, heme‑regulated

Only 100 of 181 total aligned reads displayed.

AACACCGCGCCCATCATATTTTGTTCAAGGGCGGGGAAAAAAATGCCATCGGCGGCATTTTCCGCATCG  >  REL606/1539592‑1539660
                                  |                                   
tctgcggtcttgcgatgtttgttgtagctGGGggg                                     <  1:8239174‑M1/6‑1 (MQ=255)
gggatcatgcacgcctttatcgccctcggggcggg                                     >  1:4816494‑M2/35‑35 (MQ=255)
gggatcatgcacgcctttatcgccctcggggcggg                                     >  1:11980529‑M2/35‑35 (MQ=255)
gggatcatgcacgcctttatcgccctcggggcggg                                     >  1:18112307‑M2/35‑35 (MQ=255)
gccgggctggactcttcccaggggccaacGGCggg                                     <  1:14369371‑M1/6‑1 (MQ=255)
aaCACCGCGCCCATCATATTTTGTTCAAGGGCggg                                     >  1:1833888/1‑35 (MQ=255)
aaCACCGCGCCCATCATATTTTGTTCAAGGGCggg                                     >  1:17536742/1‑35 (MQ=255)
aaCACCGAGCCCATCATATTTTGTTCAAGGGCggg                                     <  1:1214377/35‑1 (MQ=255)
 ggatcatgcacgcctttatcgccctcggggcgggg                                    >  1:11223072‑M2/34‑35 (MQ=255)
 ggatcatgcacgcctttatcgccctcggggcgggg                                    >  1:13708483‑M2/34‑35 (MQ=255)
 ctgcggtcttgcgatgtttgttgtagctGGGgggg                                    <  1:11706906‑M1/7‑1 (MQ=255)
 ccgggctggactcttcccaggggccaacGGcgggc                                    <  1:19832829‑M1/7‑2 (MQ=255)
 ccgggctggactcttcccaggggccaacGGCgggg                                    <  1:7921637‑M1/7‑1 (MQ=255)
 ccgggctggactcttcccaggggccaacGGCgggg                                    <  1:2004507‑M1/7‑1 (MQ=255)
 acacCGCGCCCATCATATTTTGTTCAAGGGCgggg                                    >  1:19560505/1‑35 (MQ=255)
 acacCGCGCCCATCATATTTTGTTCAAGGGCgggg                                    >  1:17976208/1‑35 (MQ=255)
 acacCGCGCCCATCATATTTTGTTCAAGGGCgggg                                    >  1:10089225/1‑35 (MQ=255)
  tgcggtcttgcgatgtttgttgtagctGGCGGGGa                                   <  1:20335024‑M1/8‑1 (MQ=255)
  cgggctggactcttcccaggggccaacGGCGGGGa                                   <  1:17185309‑M1/8‑1 (MQ=255)
   gggctggactcttcccaggggccaacGgcggggga                                  <  1:14740056‑M1/9‑3 (MQ=255)
   atcatgcacgcctttatcgccctcggggcggGGaa                                  >  1:15565978‑M2/32‑35 (MQ=255)
   acCGCGCCCATCATATTTTGTTCAAGGGCGGGGaa                                  >  1:7705369/1‑35 (MQ=255)
   acCGCGCCCATCATATTTTGTTCAAGGGCGGGGaa                                  >  1:4471284/1‑35 (MQ=255)
    tcatgcacgcctttatcgccctcggggcggGaaag                                 >  1:748425‑M2/31‑34 (MQ=255)
    cggtcttgcgatgtttgttgtagctGGCGGGGaaa                                 <  1:3719947‑M1/10‑1 (MQ=255)
     ggtcttgcgatgtttgttgtagctGGCGgggacaa                                <  1:5036058‑M1/11‑4 (MQ=255)
     ggtcttgcgatgtttgttgtagctGGCGGggaaca                                <  1:1219349‑M1/11‑3 (MQ=255)
     ggtcttgcgatgtttgttgtagctGGCGGGGaaaa                                <  1:6266175‑M1/11‑1 (MQ=255)
     ggtcttgcgatgtttgttgtagctGGCGGGGaaaa                                <  1:9391261‑M1/11‑1 (MQ=255)
     gctggactcttcccaggggccaacGGCGGGGgaaa                                <  1:2147787‑M1/11‑1 (MQ=255)
     cgcgCCCATCATATTTTGTTCAAGGGCGGGGaaaa                                <  1:6995696/35‑1 (MQ=255)
     catgcacgcctttatctccctcggggcggGGaaaa                                >  1:4059524‑M2/30‑35 (MQ=255)
     catgcacgcctttatcgccctcggggcggGgaaac                                >  1:20476655‑M2/30‑34 (MQ=255)
     attttggatctttgtgccgcccccGGCGGGGaaaa                                <  1:2635236‑M1/11‑1 (MQ=255)
      ttttggatctttgtgccgcccccGGCGGGGaaaaa                               <  1:16223364‑M1/12‑1 (MQ=255)
      gcgcCCATCATATTTTGTTCAAGGGCGGGGaaaaa                               <  1:9072223/35‑1 (MQ=255)
      ctggactcttcccaggggccaacGGCGGGGaaaaa                               <  1:2207069‑M1/12‑1 (MQ=255)
      atgcacgcctttatcgccctcggggcggggaaaca                               >  1:8902588‑M2/29‑33 (MQ=255)
      atgcacgcctttatcgccctcggggcggGGaaaaa                               >  1:16701578‑M2/29‑35 (MQ=255)
      atgcacgcctttatcgccctcggggcggGGaaaaa                               >  1:8496589‑M2/29‑35 (MQ=255)
       tttggatctttgtgccgcccccGGCGgggaaacaa                              <  1:15364491‑M1/13‑4 (MQ=255)
       tttggatctttgtgccgcccccGGCGGGGaaaaaa                              <  1:527614‑M1/13‑1 (MQ=255)
       tttggatctttgtgccgcccccGGCGGGGaaaaaa                              <  1:20202255‑M1/13‑1 (MQ=255)
       tggactcttcccaggggccaacGGCGgggaaataa                              <  1:17159259‑M1/13‑4 (MQ=255)
       tgcacgcctttatcgccctcggggcggGGgaaaaa                              >  1:3153834‑M2/28‑35 (MQ=255)
       tcttgcgatgtttgttgtagctGGCGGGGaaaaaa                              <  1:2796183‑M1/13‑1 (MQ=255)
       cgcCCATCATATTTTGTTCAAGGGCGGGGaaaaaa                              >  1:18159108/1‑35 (MQ=255)
       cgcCCATCATATTTTGTTCAAGGGCGGGGaaaaaa                              >  1:2452290/1‑35 (MQ=255)
        ggactcttcccagtggccaacGGCGGGGaaaaaaa                             <  1:5902689‑M1/14‑1 (MQ=255)
        ggactcttcccaggggccaacGGCGGggaaaaaca                             <  1:13282931‑M1/14‑3 (MQ=255)
        gcacgcctttatcgccctcggggcggGGaaaaaaa                             >  1:2703605‑M2/27‑35 (MQ=255)
        gcCCATCATATTTTGTTCAAGGGCGGGGaaaaaaa                             <  1:15721695/35‑1 (MQ=255)
        gcCCATCATATTTTGTTCAAGGGCGGGGaaaaaaa                             >  1:16397055/1‑35 (MQ=255)
        gcCCATCATATTTTGTTCAAGGGCGGGGaaaaaaa                             >  1:20457082/1‑35 (MQ=255)
        gcCCATCATATTTTGTTCAAGGGCGGGGaaaaaaa                             >  1:5455849/1‑35 (MQ=255)
        cttgcgatgtttgttgtagctGGCGGGggaaaaag                             <  1:10754952‑M1/14‑2 (MQ=255)
         ttgcgatgtttgttgtagctGGCGGGgaaaaaaag                            <  1:17465494‑M1/15‑2 (MQ=255)
         ttgcgatgtttgttgtagctGGCGGGgaaaaaaac                            <  1:10951186‑M1/15‑2 (MQ=255)
         cccATCATATTTTGTTCAAGGGCGGGGAAAAAAAt                            <  1:3990717/35‑1 (MQ=255)
         cacgcctttatcgccctcggggcggGgaaaaaaaa                            >  1:15051438‑M2/26‑34 (MQ=255)
         cacgcctttatcgccctcggggcggGaaaaaaaac                            >  1:16779729‑M2/26‑34 (MQ=255)
          tgcgatgtttgttgtagctGGCGGggaaaaaaagg                           <  1:14322535‑M1/16‑3 (MQ=255)
          ggatctttgtgccgcccccGGCGGggaaaaaaagc                           <  1:13586159‑M1/16‑3 (MQ=255)
          ccATCATATTTTGTTCAAGGGCTGGGAAAAAAATg                           >  1:20106201/1‑35 (MQ=255)
          actcttcccaggggccaacGGCGGggaaaaaaaat                           <  1:12168449‑M1/16‑3 (MQ=255)
          acgcctttatcgccctcggggcggggaaaaaaaca                           >  1:12542969‑M2/25‑33 (MQ=255)
          acgcctttatcgccctcggggcggggaaaaaaaaa                           >  1:16835855‑M2/25‑33 (MQ=255)
           catcatATTTTGTTCAAGGGCGGGGAAAAAAATGc                          <  1:11611755/35‑1 (MQ=255)
           catcatATTTTGTTCAAGGGCGGGGAAAAAAATGc                          >  1:13455611/1‑35 (MQ=255)
           catcatATTTTGTTCAAGGGCGGGGAAAAAAATGc                          >  1:4248002/1‑35 (MQ=255)
           catcatATTTTGTTCAAGGGCGGGGAAAAAAATGc                          <  1:4456135/35‑1 (MQ=255)
           catcatATTTTGTTCAAGGGCGGGGAAAAAAATGc                          <  1:15199588/35‑1 (MQ=255)
            tcttcccaggggccaacGGCGGGGAAAAaaatttt                         <  1:9660419‑M1/18‑4 (MQ=255)
            atcatATTTTGTTCAATGGCGGGGGAAAAAAAGcc                         >  1:15513426/1‑35 (MQ=25)
            atcatATTTTGTTCAAGGGCGGGGAAAAAAATGcc                         >  1:19763218/1‑35 (MQ=255)
            atcatATTTTGTTCAAGGGCGGGGAAAAAAATGcc                         <  1:17741803/35‑1 (MQ=255)
             tcatATTTTGTTCAAGGGCGGGGAAAAAAATGCCa                        >  1:19144364/1‑35 (MQ=255)
              catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                       >  1:7045781/1‑35 (MQ=255)
              catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                       <  1:6936153/35‑1 (MQ=255)
              catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                       >  1:13819810/1‑35 (MQ=255)
              catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                       >  1:9372675/1‑35 (MQ=255)
              catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                       <  1:9729950/35‑1 (MQ=255)
              catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                       >  1:6634371/1‑35 (MQ=255)
              catATTTTGTTCAAGGGCGGGGAAAAAAATGCCAt                       >  1:6475746/1‑35 (MQ=255)
               atatTTTGTTCAAGGGCGGGGAAAAAAATGCCATc                      >  1:2833314/1‑35 (MQ=255)
                 atTTTGTTCAAGGGCGGGGAAAAAAATGCCATcgg                    <  1:8187857/35‑1 (MQ=255)
                  ttttGTTCAAGGGCGGGGAAAAAAATGCCATcggc                   <  1:13164812/35‑1 (MQ=255)
                  ttttGTTCAAGGGCGGGGAAAAAAATGCCATcggc                   >  1:8571228/1‑35 (MQ=255)
                   tttGTTCAAGGGCGGGGAAAAAAATGCCATcggcg                 <  1:18742053/35‑1 (MQ=255)
                    ttGTTCAAGGGCGGGGAAAAAAATGCCATcggcgg                <  1:3517030/35‑1 (MQ=255)
                     tGTTCAAGGGCGGGGAAAAAAATGCCATcggcggg               >  1:20610411/1‑34 (MQ=255)
                     tGTTCAAGGGCGGGGAAAAAAATGCCATcggcggg               >  1:14128541/1‑34 (MQ=255)
                      gTTCAAGGGCGGGGAAAAAAATGCCATcggcgggg              >  1:10201887/1‑33 (MQ=255)
                           aGGGCGGGGAAAAAAATGCCATCGGCGGCATTTTc         <  1:13983234/35‑1 (MQ=255)
                             ggCGGGGAAAAAAATGCCATCGGCGGGCCTTTTcc        >  1:11785970/1‑35 (MQ=25)
                             GGCGGGGAAAAAAATGCCATCGGCGGCATTTTCCg       >  1:19486393‑M1/1‑35 (MQ=255)
                             GGCGGGGAAAAAAATGCCATCGGCGGCATTTTCCg       >  1:5736683‑M1/1‑35 (MQ=255)
                               CGGGGAAAAAAATGCCATCGGCGGCATTTTCCGCa     >  1:16585281‑M1/1‑35 (MQ=255)
                                 GGGAAAAAAATGCCATCGGCGGCATTTTCCGCATc   >  1:9086103‑M1/1‑35 (MQ=255)
                                  ggAAAAAAATGCCATCGGCGGCATTTTCCGCATCg  <  1:2985310/35‑1 (MQ=255)
                                  |                                   
AACACCGCGCCCATCATATTTTGTTCAAGGGCGGGGAAAAAAATGCCATCGGCGGCATTTTCCGCATCG  >  REL606/1539592‑1539660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.