New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 564054 = | 42 (0.410) | 9 (0.120) | 3/34 | NT | 14.5% | coding (2252/2973 nt) | nfrA | bacteriophage N4 receptor, outer membrane subunit |
? | REL606 | 1414711 = | 76 (1.040) | coding (223/276 nt) | racC | predicted protein |
GGTCGCCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/564094‑564054 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcttTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAC > REL606/1414711‑1414744 GGTCGCCGCTGGACGTTCAGTTTCGATTCTTCTAT < 1:18093958/35‑1 GGTCGCCGCTGGACGTTCAGTTTCGATTCTTCTAT < 1:1085650/35‑1 GGTCGCCGCTGGACGTTCAGTTTCGATTCTTCTAT < 1:19315925/35‑1 GGTCGCCGCTGGACGTTCAGTTTCGATTCTTCTAT > 1:8027860/1‑35 GTCGCCGCTGGACGTTCAGTTTCGATTCTTCTATC < 1:11818688/35‑1 GTCGCCGCTGGACGTTCAGTTTCGATTCTTCTATC < 1:4821257/35‑1 GTCGCCGCTGGACGTTCAGTTTCGATTCTTCTATC < 1:5148911/35‑1 GTCGCCGCTGGACGTTCAGTTTCGATTCTTCTATC < 1:5211300/35‑1 GTCGCCGCTGGACGGTCAGTTTCGATTCTTCTATC > 1:3837558/1‑35 TCGCCGCTGGACGTTCAGTTTCGATTCTTCTATCG > 1:10573014/1‑35 TCGCCGCTGGACGTTCAGTTTCGATTCTTCTATCG < 1:20256126/35‑1 TCGCCGCTGGACGTTCAGTTTCGATTCTTCTATCG < 1:15254890/35‑1 TCGCCGCTGGACGTTCAGTTTCGATTCTTCTATCG < 1:12055733/35‑1 CGCCGCTGGACGTTCAGTTTCGATTCTTCTATCag < 1:14380587/35‑3 CGCCGCTGGACGTTCAGTTTCGATTCTTCTATCGG < 1:15420733/35‑1 CGCCGCTGGACGTTCAGTTTCGATTCTTCTATCGG > 1:12537957/1‑35 GCCGCTGGACGTTTAGTTTCGATTCTTCTATCGGC > 1:16561536/1‑35 GCCGCTGGACGTTCAGTTTCGATTCTTCTATCGGC > 1:11354315/1‑35 GCCGCTGGACGTTCAGTTTCGATTCTTCTATCGGC < 1:18345677/35‑1 GCCGCTGGACGTTCAGTTTCGATTCTTCTATCGGC > 1:1341133/1‑35 GCCGCTGGACGTTCAGTTTCGATTCTTCTATCGGC > 1:7413521/1‑35 GCCGCTGGACGTTAAGTTTCGATTCTTCTATCGGC < 1:693516/35‑1 CCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCT > 1:8037763/1‑35 CCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCT < 1:15310272/35‑1 CCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCT < 1:3912466/35‑1 CCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCT > 1:18837899/1‑35 CCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCT > 1:12754234/1‑35 CGCTGGACGTTCAGTTTCGATTCTTCTATCGGCTT < 1:12635491/35‑1 CGCTGGACGTTCAGTTTCGATTCTTCTATCGGCTT > 1:13725278/1‑35 CGCTGGACGTTCAGTTTCGATTCTTCTATCGGCTT < 1:1861200/35‑1 CTGGACGTTCAGTTTCGATTCTTCTATCGGCTTTT > 1:924259/1‑35 CTGGACGTTCAGTTTCGATTCTTCTATCGGCTTTT > 1:19596845/1‑35 CTGGACGTTCAGTTTCGATTCTTCTATCGGCTTTT > 1:4632149/1‑35 CTGGACGTTCAGTTTCGATTCTTCTATCGGCTTTT > 1:14790910/1‑35 CTGGACGTTCAGTTTCGATTCTTCTATCGGCTTTT > 1:13329512/1‑35 GGACGTTCAGTTTCGATTCTTCTATCGGCTTTTTT > 1:15757594/1‑35 GACGTTCAGTTTCGATTCTTCTATCGGCTTTTTTT > 1:6734249/1‑35 GACGTTCAGTTTCGATTCTTCTATCGGCTTTTGTT > 1:1161414/1‑35 ACGTTCAGTTTCGATTCTTCTATCGGCTTTTTTTT > 1:6719512/1‑35 ACGTTCAGTTTCGATTCTTCTATCGGCTTTTGTTc > 1:10466231/1‑34 ACGTTCAGTTTCGATTCTTCTATCGGCTTTTGTTT > 1:11615009/1‑35 CGTTCAGTTTCGATTCTTCTATCGGCTTTTTTTTC > 1:9114290/1‑35 CGTTCAGTTTCGATTCTTCTATCGGCTTTTTGTTC > 1:15417947/1‑35 CGTTCAGTTTCGATTCTTCTATCGGCTTTTGTTTC > 1:11993559/1‑35 CGTTCAGTTTCGATTCTTCTATCGGCTTTTGTTTC > 1:6177852/1‑35 GTTCAGTTTCGATTCTTCTATCGGCTTTTTTTTCT > 1:9944821/1‑35 TTCAGTTTCGATTCTTCTATCGGCTTTTTTTTtgc > 1:16196160/1‑32 TCAGTTTCGATTCTTCTATCGGCTTTTTTTTTTGg > 1:2650312/1‑34 TCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGAT < 1:11884066/35‑1 TCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGAT < 1:7347305/35‑1 TCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGAT < 1:17330639/35‑1 CGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATA < 1:18467498/35‑1 CGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATA < 1:19219089/35‑1 GGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAT < 1:3321828/35‑1 GGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAT > 1:15500899/1‑35 GGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAT < 1:15067213/35‑1 GGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAT < 1:14981562/35‑1 GGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAT < 1:5938333/35‑1 GGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAT > 1:12231957/1‑35 GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG > 1:9563760/1‑35 GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG < 1:955887/35‑1 GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG < 1:19200506/35‑1 GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG < 1:1921095/35‑1 GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG < 1:13249460/35‑1 GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG < 1:14587746/35‑1 GCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATG < 1:14622907/35‑1 CTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGC > 1:7734626/1‑35 CTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGC < 1:17174908/35‑1 CTTTTTTTTCTGCGGGAAGATTCTTTCCGATATGC < 1:2637820/35‑1 TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCA < 1:13407954/35‑1 TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCA < 1:1483133/35‑1 TTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCA > 1:2553187/1‑35 TTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAC < 1:1552041/35‑1 TTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAC > 1:6162695/1‑35 TTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAC > 1:8751531/1‑35 TTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAC < 1:17305235/35‑1 GGTCGCCGCTGGACGTTCAGTTTCGATTCTTCTATCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/564094‑564054 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcttTTTTTTCTGCGGGCAGATTCTTTCCGATATGCAC > REL606/1414711‑1414744 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |