New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1830987 = | 34 (0.330) | 6 (0.080) | 4/36 | NT | 13.9% | coding (221/1359 nt) | ydjE | predicted transporter |
? | REL606 | = 1996585 | 49 (0.640) | coding (1262/1644 nt) | yeeO | predicted multidrug efflux system |
CCCAAAGTAATCACCGATGAACCCACCGGTAAGAGAGCCGATGAAATAACCAAACATTAATGCCGAGGT > REL606/1830953‑1831021 | tgggtgtaaaacgatgccataaccccggcaaaggg < 1:10585439‑M1/1‑1 (MQ=255) tgggtgtaaaacgatgccataaccccggcaaaggg > 1:2679925‑M1/35‑35 (MQ=255) tgggtgtaaaacgatgccataaccccggcaaaggg < 1:14915155‑M1/1‑1 (MQ=255) cccAAAGTAATCCCCGATGAACCCACCGGTAagag < 1:13898826/35‑1 (MQ=255) cccAAAGTAATCACCGATGAACCCACCGGTAagag > 1:11330157/1‑35 (MQ=255) gggtgtaaaacgatgccataaccccggcaaaggGa < 1:5687446‑M1/2‑1 (MQ=255) gggtgtaaaacgatgccataaccccggcaaaggGa < 1:10818660‑M1/2‑1 (MQ=255) gggtgtaaaacgatgccataaccccggcaaaggGa > 1:12485819‑M1/34‑35 (MQ=255) gggtgtaaaacgatgccataaccccggcaaaggGa > 1:11943329‑M1/34‑35 (MQ=255) ggtgtaaaacgatgccataacccctgcaaaggGAg < 1:3786344‑M1/3‑1 (MQ=255) ggtgtaaaacgatgccataaccccggcaaaggGAg < 1:16930980‑M1/3‑1 (MQ=255) ggtgtaaaacgatgccataaccccggcaaaggGAg < 1:10666178‑M1/3‑1 (MQ=255) aaaaATAATCACCGATGAACCCACCGGTAagagag < 1:17214918/34‑1 (MQ=255) gtgtaaaccgatgccataaccccggcaaaggGAGc > 1:13475329‑M1/32‑35 (MQ=255) gtgtaaaacgatgccataacctcggcaaaggGAGc < 1:9361167‑M1/4‑1 (MQ=255) gtgtaaaacgatgccataaccccggcaaaggGAGc < 1:2176140‑M1/4‑1 (MQ=255) aaaGTAATCACCGATGAACCCACCGGTAAGAGAGc > 1:19024477/1‑35 (MQ=255) aaaGTAATCACCGATGAACCCACCGGTAAGAGAGc > 1:14639138/1‑35 (MQ=255) aaaGTAATCACCGATGAACCCACCGGTAAGAGAGc > 1:7165286/1‑35 (MQ=255) aaaGTAATCACCGATGAACCCACCGGTAAGAGAGc > 1:19314475/1‑35 (MQ=255) aaaGTAATCACCGATGAACCCACCGGTAAGAGAGc > 1:3909011/1‑35 (MQ=255) aaaGTAATCACCGATGAACCCACCGGTAAGAGAGc > 1:1214938/1‑35 (MQ=255) tgtaaaacgatgccataaccccggcaaaggGAGcc > 1:1586854‑M1/31‑35 (MQ=255) tgtaaaacgatgccataaccccggcaaaggGAGcc > 1:6463181‑M1/31‑35 (MQ=255) tgtaaaacgatgccataaccccggcaaaggGAGcc > 1:4810066‑M1/31‑35 (MQ=255) tgtaaaacgatgccataaccccggcaaaggGAGcc < 1:7030298‑M1/5‑1 (MQ=255) aaGTAATCACCGATGAACCCACCGGTAAGAGAGcc > 1:12278255/1‑35 (MQ=255) aaGTAATCACCGATGAACCCACCGGTAAGAGAGcc > 1:12411700/1‑35 (MQ=255) aaGTAATCACCGATGAACCCACCGGTAAGAGAGcc > 1:10508721/1‑35 (MQ=255) aaGTAATCACCGATGAACACACCGGTAAGAGAGcc < 1:289808/35‑1 (MQ=255) aGTAATCACCGATGAACCCACCGGTAAGAGAGCCg > 1:17187483/1‑35 (MQ=255) taaaacgatgccataaccccggcaaagggagcagt > 1:10828241‑M1/29‑32 (MQ=255) gTAATCACCGATGAACCCACCGGTAAGAGAGCCGa > 1:11738348/1‑35 (MQ=255) tAATCACCGATGAACCCACCGGTAAGAGAGCCGAt > 1:14566810/1‑35 (MQ=255) tCACCGATGAACCCACCGGTAAGAGAGCCGATGaa > 1:13846109/1‑35 (MQ=255) tCACCGATGAACCCACCGGTAAGAGAGCCGATGaa > 1:16021427/1‑35 (MQ=255) aCCGATGAACCCACCGGTAAGAGAGCCGATGAAAt > 1:765107/1‑35 (MQ=255) ccGATGAACCCACCGGTAAGAGAGCCGATGAAATa > 1:14400486/1‑35 (MQ=255) ccGATGAACCCACCGGTAAGAGAGCCGATGAAATa > 1:5410213/1‑35 (MQ=255) ccGATGAACCCACCGGTAAGAGAGCCGATGAAATa > 1:10675986/1‑35 (MQ=255) ccGATGAACCCACCGGTAAGAGAGCCGATGAAATa > 1:19133608/1‑35 (MQ=255) cGATGAACCCACCGGTAAGAGAGCCGATGAAATaa > 1:4995993/1‑35 (MQ=255) cGATGAACCCACCGGTAAGAGAGCCGATGAAATaa > 1:12258564/1‑35 (MQ=255) cGATGAACCCACCGGTAAGAGAGCCGATGAAATaa > 1:8218864/1‑35 (MQ=255) cGATGAACCCACCGGTAAGAGAGCCGATGAAATaa > 1:138817/1‑35 (MQ=255) gATGAACCCACCGGTAAGAGAGCCGATGAAATAAc > 1:16905086/1‑35 (MQ=255) gATGAACCCACCGGTAAGAGAGCCGATGAAATAAc > 1:2253700/1‑35 (MQ=255) gATGAACCCACCGGTAAGAGAGCCGATGAAATAAc > 1:17696755/1‑35 (MQ=255) gATGAACCCACCGGTAAGAGAGCCGATGAAATAAc > 1:7700529/1‑35 (MQ=255) aTGAACCCACCGGTAAGAGAGCCGATGAAATAAcc > 1:2205778/1‑35 (MQ=255) tGAACCCACCGGTAAGAGAGCCGATGAAATAACCa > 1:3397481/1‑35 (MQ=255) tGAACCCACCGGTAAGAGAGCCGATGAAATAACCa > 1:15742387/1‑35 (MQ=255) ccccCCCGGAAAGGGAGCCGATGAAATAACCAAAc < 1:19754554/34‑1 (MQ=25) aCCCACCGGTAAGAGAGCCGATGAAATAACCAAAc > 1:11410423/1‑35 (MQ=255) cccccgggaaaggGAGCCGATGAAATAACCAAACa > 1:2694542‑M1/14‑35 (MQ=255) cccACCGGTAAGAGAGCCGATGAAATAACCAAACa > 1:12729117/1‑35 (MQ=255) ccccgggaaaggGAGCCGATGAAATAACCAAACAt > 1:15027576‑M1/13‑35 (MQ=255) ccccgggaaaggGAGCCGATGAAATAACCAAACAt > 1:6924732‑M1/13‑35 (MQ=255) ccACCGGTAAGAGAGCCGATGAAATAACCAAACAt > 1:5304183/1‑35 (MQ=255) cccgggaaaggGAGCCGATGAAATAACCAAACAtt > 1:3944599‑M1/12‑35 (MQ=255) ccgggaaaggGAGCCGATGAAATAACCAAACATTa > 1:4623321‑M1/11‑35 (MQ=255) aCCGGAAAGGGAGCCGATGAAATAACCAAACATTa < 1:17572010/35‑1 (MQ=38) ccGGTAAGAGAGCCGATGAAATAACCAAACATTaa > 1:19509605/1‑35 (MQ=255) ccGGTAAGAGAGCCGATGAAATAACCAAACATTaa > 1:15861663/1‑35 (MQ=255) gggaaaggGAGCCGATGAAATAACCAAACATTAAt > 1:12789494‑M1/9‑35 (MQ=255) cGGTAAGAGAGCCGATGAAATAACCAAACATTAAt > 1:5851541/1‑35 (MQ=255) cGGTAAGAGAGCCGATGAAATAACCAAACATTAAt > 1:15568593/1‑35 (MQ=255) cGGTAAGAGAGCCGATGAAATAACCAAACATTAAt > 1:14259001/1‑35 (MQ=255) ggTAAGAGAGCCGATTAAATAACCAAACATTAATg > 1:17200494/1‑35 (MQ=255) ggTAAGAGAGCCGATGAAATAACCAAACATTAATg > 1:15109170/1‑35 (MQ=255) gaagggGAGCCGATGAAATAACCAAACATTAATGc > 1:9581073‑M1/7‑35 (MQ=255) gaagggGAGCCGATGAAATAACCAAACATTAATGc > 1:13457623‑M1/7‑35 (MQ=255) gTAAGAGAGCCGATGAAATAACCAAACATTAATGc > 1:17804026/1‑35 (MQ=255) tAAGAGAGCCGATGAAATAACCAAACATTAATGcc > 1:4909771/1‑35 (MQ=255) tAAGAGAGCCGATGAAATAACCAAACATTAATGcc > 1:14864981/1‑35 (MQ=255) aaggGAGCCGATGAAATAACCAAACATTAATGCCg > 1:135099‑M1/5‑35 (MQ=255) aaGAGAGCCGATGAAATAACCAAACATTAATGCCg > 1:20130113/1‑35 (MQ=255) aaGAGAGCCGATGAAATAACCAAACATTAATGCCg > 1:6938395/1‑35 (MQ=255) aaGAGAGCCGATGAAATAACCAAACATTAATGCCg > 1:14359235/1‑35 (MQ=255) aaGAGAGCCGATGAAATAACCAAACATTAATGCCg > 1:1011218/1‑35 (MQ=255) gggGAGCCGATGAAATAACCAAACATTAATGCCGa > 1:6340809‑M1/4‑35 (MQ=255) ggGAGCCGATGAAATAACCAAACATTAATGCCGAg > 1:13517369‑M1/3‑35 (MQ=255) gagagCCGATGAAATAACCAAACATTAATGCCGAg > 1:17598140/1‑35 (MQ=255) gGAGCCGATGAAATAACCAAACATTAATGCCGAgg > 1:6810050‑M1/2‑35 (MQ=255) agagCCGATGAAATAACCAAACATTAATGCCGAgg > 1:3599081/1‑35 (MQ=255) GAGCCGATGAAATAACCAAACATTAATGCCGAGGt < 1:2685326‑M1/35‑1 (MQ=255) GAGCCGATGAAATAACCAAACATTAATGCCGAGGt > 1:10829388‑M1/1‑35 (MQ=255) | CCCAAAGTAATCACCGATGAACCCACCGGTAAGAGAGCCGATGAAATAACCAAACATTAATGCCGAGGT > REL606/1830953‑1831021 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |