New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2698091 = | 73 (0.710) | 6 (0.070) | 3/40 | NT | 9.3% | coding (1992/2145 nt) | nrdE | ribonucleotide‑diphosphate reductase alpha subunit |
? | REL606 | 3668825 = | 56 (0.650) | coding (873/2031 nt) | malS | periplasmic alpha‑amylase precursor |
Only 100 of 143 total aligned reads displayed.
CGACTCGCCATGTCGATCAGGGGCTGTCGCTG‑ACGCTTTTTTTCCCCGATACCGCCACCACTCGCGATA > REL606/2698057‑2698125 | cGACTGGCCATGTCGATCAGGGGCTGTCGCTG‑ACg < 1:9451207/35‑1 (MQ=255) cGACTCGCCATGTCGATCAGGGGCTGTCGCTG‑ACg < 1:17585069/35‑1 (MQ=255) cGACTCGCCATGTCGATCAGGGGCTGTCGCTG‑ACg < 1:17108742/35‑1 (MQ=255) gACTCGCCATGTCGATCAGGGGCTGTCGCTG‑ACGc < 1:5275713/35‑1 (MQ=255) ctgatgtgcgctatcaaccagcgtccgtagatcgg > 1:16468031‑M1/35‑35 (MQ=255) ctgatgtgcgctatcaaccagcgtccgtagatcgg < 1:16054077‑M1/1‑1 (MQ=255) ctgatgtgcgctatcaaccagcgtccgtagatcgg < 1:9120566‑M1/1‑1 (MQ=255) ctgatgtgcgctatcaaccagcgtccgtagatcgg < 1:13839499‑M1/1‑1 (MQ=255) ctgatgtgcgctatcaaccagcgtccgtagatcgg > 1:3822356‑M1/35‑35 (MQ=255) tgatgtgcgctatcaaccatcgtccgtagatcgGc < 1:16298117‑M1/2‑1 (MQ=255) tgatgtgcgctatcaaccagcgtccgtagatcgGc < 1:13052591‑M1/2‑1 (MQ=255) tgatgtgcgctatcaaccagcgtccgtagatcgGc > 1:1268475‑M1/34‑35 (MQ=255) tgatgtgcgctatcaacaagcgtccgtagatcgGc > 1:6957692‑M1/34‑35 (MQ=255) tgaggtgcgctatcaaccagcgtccgtagatcgGc > 1:15895738‑M1/34‑35 (MQ=255) ccTCGCCATGTCGATCAGGGGCTGTCGCTG‑ACGCt < 1:8279106/34‑1 (MQ=255) ccTCGCCATGTCGATCAGGGGCTGTCGCTG‑ACGCt < 1:5789607/34‑1 (MQ=255) ccTCGCCATGTCGATCAGGGGCTGTCGCTG‑ACGCt < 1:12071172/34‑1 (MQ=255) gatgtgcgctatcaaccagcgtccgtagatcgGCt > 1:14541082‑M1/33‑35 (MQ=255) gatgtgcgctatcaaccagcgtccgtagatcgGCt < 1:6930891‑M1/3‑1 (MQ=255) cTCGCCATGTCGATCAGGGGCTGTCGCTG‑ACGCtt < 1:2380891/35‑1 (MQ=255) cTCGCCATGTCGATCAGGGGCTGTCGCTG‑ACGCtt < 1:5298941/35‑1 (MQ=255) cTCGCCATGTCGATCAGGGGCTGGGGCTG‑GCGcgt > 1:17495806/1‑33 (MQ=21) tCGCCATGTCGATCAGGGGCTGTCGCTG‑ACGCttt < 1:2999120/35‑1 (MQ=255) tCGCCATGTCGATCAGGGGCTGTCGCTG‑ACGCttt < 1:19753486/35‑1 (MQ=255) tCGCCATGTCGATCAGGGGCTGTCGCTG‑ACGCttt < 1:10415563/35‑1 (MQ=255) tgtgcgctatcaaccagcgtccgtagatcgGCttt < 1:4659174‑M1/5‑1 (MQ=255) gtgcgctatcaaccagcgtccgtagatcgGctttg < 1:5676354‑M1/6‑2 (MQ=255) gtgcgctatcaaccagcgtccgtagatcgGCtttt < 1:13597825‑M1/6‑1 (MQ=255) gtgcgctatcaaccagcgtccgtagatcgGCtttt < 1:8654633‑M1/6‑1 (MQ=255) gCCATGTCGATCAGGGGCTGGGGCTGTGCGCtttt > 1:20526996/1‑35 (MQ=12) tgcgctatcaaccagcgtccgtagatcggctttgt < 1:7022865‑M1/7‑3 (MQ=255) tgcgctatcaaccagcgtccgtagatcgGCttttt < 1:5561833‑M1/7‑1 (MQ=255) ccATGTCGATCAGGGGCTGTCGCTG‑ACGCtttttt < 1:5559187/35‑1 (MQ=255) gcgctatcaaccagcgtccgtagatcgGCtttttt < 1:509860‑M1/8‑1 (MQ=255) cATGTCGATCAGGGGCTGTCGCTG‑ACGCttttttt < 1:9923643/35‑1 (MQ=255) cATGTCGATCAGGGGCTGTCGCTG‑ACGCttttttt < 1:11587089/35‑1 (MQ=255) aTGTCGATCAGGGGCTGTCGCTG‑ACGCTTTTTTTc < 1:14531397/35‑1 (MQ=255) aTGTCGATCAGGGGCTGTCGCTG‑ACGCTTTTTTTc < 1:7323860/35‑1 (MQ=255) aTGTCGATCAGGGGCTGTCGCTG‑ACGCTTTTTTTc < 1:8113430/35‑1 (MQ=255) aTGTCGATCAGGGGCTGTCGCTG‑ACGCTTTTTTTc < 1:1413141/35‑1 (MQ=255) tGTCGATCAGGGGCTGTCGCTG‑ACGCTTTTTTTcc < 1:15354135/35‑1 (MQ=255) gctatcaaccagcgtccgtagatcggcttttttgt < 1:18402055‑M1/10‑3 (MQ=255) gctatcaaccagcgtccgtagatcgGctttttttt < 1:17736070‑M1/10‑2 (MQ=255) gctatcaaccagcgtccgtagatcgGctttttttt < 1:16328580‑M1/10‑2 (MQ=255) gctatcaaccagcgtccgtagatcgGCTTTTTTTc < 1:13022735‑M1/10‑1 (MQ=255) gTCGATCAGGGGCTGTCGCTG‑ACGCTTTTTTTccc < 1:18788950/35‑1 (MQ=255) tatcaaccagcgtccgtagatcggcttttttttcc < 1:4541546‑M1/12‑4 (MQ=255) tatcaaccagcgtccgtagatcgGCTTTTTTGccc < 1:9937222‑M1/12‑1 (MQ=255) tCGATCAGGGGCTGTCGCTG‑ACGCTTTTTTTcccc < 1:2538265/35‑1 (MQ=255) cGATCAGGGGCTGTCGCTG‑ACGCTTTTTTTCCCCg < 1:12102945/35‑1 (MQ=255) atcaaccagcgtccgtagatcgGCTTTTTTtccca < 1:2190693‑M1/13‑2 (MQ=255) atcaaccagcgtccgtagatcgGCTTTTTTTcccc < 1:2921361‑M1/13‑1 (MQ=255) naTCAGNGGCTGTCGCTG‑ACGCTTTTTTTCCCCGa < 1:2597085/34‑1 (MQ=255) gATCAGGGGCTGTCGCTG‑ACGCTTTTTTTCCCCGa < 1:6279932/35‑1 (MQ=255) aTCAGGGGCTGTCGCTG‑ACGCTTTTTTTCCCCGAt < 1:8467369/35‑1 (MQ=255) tCAGGGGCTGTCGCTG‑ACGCTTTTTTTCCCCGATa < 1:5549292/35‑1 (MQ=255) aaccagcgtccgtagatcgGCTTTTtttcccctat < 1:3875278‑M1/16‑4 (MQ=255) cgggggCTGTACCTG‑ACGCTTTTTTTCCCCGATAc < 1:6264628/33‑1 (MQ=25) cAGGGGCTGTCGCTG‑ACGCTTTTTTTCCCCGATAc < 1:19169115/35‑1 (MQ=255) cAGGGGCTGTCGCTG‑ACGCTTTTTTTCCCCGATAc < 1:3075921/35‑1 (MQ=255) cAGGGGCTGTCGCTG‑ACGCTTTTTTTCCCCGATAc < 1:7941513/35‑1 (MQ=255) cAGGGGCTGTCGCTG‑ACGCTTTTTTTCCCCGATAc < 1:12485131/35‑1 (MQ=255) cAGGGGCTGTCGCTG‑ACGCTTTTTTTCCCCGATAc < 1:20018945/35‑1 (MQ=255) aGGGGCTGTCGCTG‑ACGCTTTTTTTCCCCGATAcc < 1:7174496/35‑1 (MQ=255) aGGGGCTGTCGCTG‑ACGCTTTTTTTCCCCGATAcc < 1:18006160/35‑1 (MQ=255) ggggCTGTCGCTG‑ACGCTTTTTTTCCCCGATACCg < 1:7661909/35‑1 (MQ=255) ggggCTGTCGCTG‑ACGCTTTTTTTCCCCGATACCg < 1:6072103/35‑1 (MQ=255) ggggCTGTCGCTG‑ACGCTTTTTTTCCCCGATACCg < 1:8774745/35‑1 (MQ=255) gggCTGTCGCTG‑ACGCTTTTTTTCCCCGATACCGc < 1:14338045/35‑1 (MQ=255) gggCTGTCGCTG‑ACGCTTTTTTTCCCCGATACCGc > 1:772867/1‑35 (MQ=255) gggCTGTCGCTG‑ACGCTTTTTTTCCCCGATACCGc < 1:9055301/35‑1 (MQ=255) gggCTGTCGCTG‑ACGCTTTTTTTCCCAGATACCGc < 1:7497491/35‑1 (MQ=255) gCTGTCGCTG‑ACGCTTTTTTTCCCCGATACCGcca > 1:11852591/1‑35 (MQ=255) gCTGTCGCTG‑ACGCTTTTTTTCCCCGATACCGcca > 1:10759851/1‑35 (MQ=255) gCTGTCGCTG‑ACGCTTTTTTTCCCCGATACCCccc > 1:3181569/1‑34 (MQ=255) cTGTCGCTG‑ACGCTTTTTTTCCCCGATACCGccac > 1:3572517/1‑35 (MQ=255) tGTCGCTT‑ACGCTTTTTTTCCCCGATACCGccacc > 1:9242909/1‑35 (MQ=255) tGTCGCTG‑ACGCTTTTTTTCCCCGATACCGccacc > 1:17518036/1‑35 (MQ=255) tGTCGCTG‑ACGCTTTTTTTCCCCGATACCGccacc > 1:8633871/1‑35 (MQ=255) tGTCGCTG‑ACGCTTTTTTTCCCCGATACCGacacc < 1:17584463/35‑1 (MQ=255) gTCGCTG‑ACGCTTTTTTTCCCCGATACCGccacca > 1:12065000/1‑35 (MQ=255) gTCGCTG‑ACGCTTTTTTTCCCCGATACCGccacca > 1:17034178/1‑35 (MQ=255) gTCGCTG‑ACGCTTTTTTTCCCCGATACCGccacca > 1:7723836/1‑35 (MQ=255) tCGCTG‑ACGCTTTTTTTCCCCGATACCGCcaccac > 1:2782541/1‑35 (MQ=255) tCGCTG‑ACGCTTTTTTTCCCCGATACCGCcaccac > 1:19018758/1‑35 (MQ=255) cGCTG‑ACGCTTTTTTTCCCCGATACCGCCACCACt > 1:14835267/1‑35 (MQ=255) cGCTG‑ACGCTTTTTTTCCCCGATACCGCCACCACt > 1:1512647/1‑35 (MQ=255) cGCTG‑ACGCTTTTTTTCCCCGATACCGCCACCACt > 1:280353/1‑35 (MQ=255) cTG‑ACGCTTTTTTTCCCCGATACCGCCACCACTcg > 1:6162651/1‑35 (MQ=255) cTG‑ACGCTTTTTTTCCCCGATACCGCCACCACTcg > 1:18847462/1‑35 (MQ=255) tG‑ACGCTTTTTTTCCCCGATACCGCCACCACTcgc > 1:14548464/1‑35 (MQ=255) g‑ACGCTTTTTTTCCCCGATACCGCCACCACTcgcg > 1:1534489/1‑35 (MQ=255) g‑ACGCTTTTTTTCCCCGATACCGCCACCACTcgcg > 1:19122671/1‑35 (MQ=255) g‑ACGCTTTTTTTCCCCGATACCGCCACCACTcgcg > 1:10998011/1‑35 (MQ=255) aCGCTTTTTTTCCCCGATACCGCCACCACTCGCGa > 1:131980/1‑35 (MQ=255) GCTTTTTTTCCCCGATACCGCCACCACTCGCGata < 1:14911576‑M1/35‑1 (MQ=255) GCTTTTTTTCCCCGATACCGCCACCACTCGCGata < 1:6927405‑M1/35‑1 (MQ=255) GCTTTTTTTCCCCGATACCGCCACCACTCGCGata < 1:6813905‑M1/35‑1 (MQ=255) GCTTTTTTTCCCCGATACCGCCACCACTCGCGata < 1:15139588‑M1/35‑1 (MQ=255) GCTTTTTTTCCCCGATACCGCCACCACTCGCCata < 1:6815282‑M1/35‑1 (MQ=255) | CGACTCGCCATGTCGATCAGGGGCTGTCGCTG‑ACGCTTTTTTTCCCCGATACCGCCACCACTCGCGATA > REL606/2698057‑2698125 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |