New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1017944 | 68 (0.660) | 11 (0.110) | 7/48 | NT | 11.4% | coding (1638/2601 nt) | ycbS | predicted outer membrane usher protein |
? | REL606 | = 3424887 | 103 (1.000) | intergenic (+105/‑21) | nirD/nirC | nitrite reductase small subunit/nitrite transporter |
Only 100 of 125 total aligned reads displayed.
AAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATC > REL606/1017910‑1017978 | aaaCTTACTGGCATACGGATCAACAGGATCGGCTa > 1:10462076/1‑35 (MQ=255) aaaCTTACTGGCATACGGATCAACAGGATCGGCTa > 1:18014767/1‑35 (MQ=255) aaaCTTACTGGCATACGGATCAACAGGATCGGCTa < 1:15100560/35‑1 (MQ=255) aaaCTTACTGGCATACGGATCAACAGGATCGGCTa > 1:3990606/1‑35 (MQ=255) aaCTTACTGGCATACGGATCAACAGGATCGGCTAt < 1:11653701/35‑1 (MQ=255) aaCTTACTGGCATACGGATCAACAGGATCGGCTAa > 1:9637745‑M1/1‑34 (MQ=255) aaCTTACTGGCATACGGATCAACAGGATCGGCTAa > 1:19656895‑M1/1‑34 (MQ=255) aaCTTACTCGCATACGGATCAACAGGATCGGCTAa > 1:1787351‑M1/1‑34 (MQ=255) aCTTACTGGCATACGGATGAATAGGATCGGCTAtt < 1:16418787/35‑1 (MQ=38) aCTTACTGGCATACGGATGAATAGGATCGGCTAtt < 1:7608350/35‑1 (MQ=38) aCTTACTGGCATACGGATCAACAGGATCGGCTAtt < 1:17142426/35‑1 (MQ=255) aCTTACTGGCATACGGATCAACAGGATCGGCTAtt < 1:7917843/35‑1 (MQ=255) cTTACTGGCATACGGATCAACAGGATCGGCTAaaa > 1:2107722‑M1/1‑32 (MQ=255) cTTACTGGCATACGGATCAACAGGATCGGCTATTa < 1:19819950/35‑1 (MQ=255) cTTACTGGCATACGGATCAACAGGATCGGCTATTa < 1:20591507/35‑1 (MQ=255) ttACTGGCATACGGATCAACAGGATCGGCTAaaaa > 1:15835781‑M1/1‑31 (MQ=255) ttACTGGCATACGGATCAACAGGATCGGCTATTAc < 1:680535/35‑1 (MQ=255) ttACTGGCATACGGATCAACAGGATCGGCTATTAc < 1:3539517/35‑1 (MQ=255) tACTGGCATACGGATCAACAGGATCGGCTAaaaaa > 1:1453564‑M1/1‑30 (MQ=255) tACTGGCATACGGATCAACAGGATCGGCTATTACa < 1:20331284/35‑1 (MQ=255) tACTGGCATACGGATCAACAGGATCGGCTATTACa < 1:1907456/35‑1 (MQ=255) tACTGGCATACGGATCAACAGGATCGGCTATTACa < 1:2671999/35‑1 (MQ=255) tACTGGCATACGGATCAACAGGATCGGCTATTACa < 1:15285431/35‑1 (MQ=255) aCTGGCATACGGATCAACAGGATCGGCTATTACAg < 1:12428231/35‑1 (MQ=255) aCTGGCATACGGATCAACAGGATCGGCTATTACAg < 1:2577381/35‑1 (MQ=255) cTGGCATACGGATCAACAGGATCGGCTATTACAGt < 1:17209096/35‑1 (MQ=255) cTGGCATACGGATCAACAGGATCGGCTATTACAGt < 1:1761303/35‑1 (MQ=255) cTGGCATACGGATCAACAGGATCGGCTATTACAGt < 1:14193102/35‑1 (MQ=255) tGGCATACGGATCAACAGGATCTGCTATTACAGtt > 1:19861454/1‑35 (MQ=255) tGGCATACGGATCAACAGGATCGGCTAaaaaaaaa > 1:13856257‑M1/1‑27 (MQ=255) ggCATACGGATCAACAGGATCGGCTATTACAGttt < 1:4664375/35‑1 (MQ=255) ggCATACGGATCAACAGGATCGGCTATTACAGttt < 1:8763606/35‑1 (MQ=255) gCATACGGATCAACAGGATCGGCTAaaaaaaaaaa > 1:7870814‑M1/1‑25 (MQ=255) gCATACGGATCAACAGGATCGGCTATTACAGTTTg < 1:16627503/35‑1 (MQ=255) cATACGGATCAACAGGATCGGCTATTACAGTTTgg < 1:1057984/35‑1 (MQ=255) cATACGGATCAACAGGATCGGCTATTACAGTTTgg < 1:13471576/35‑1 (MQ=255) aTACGGATCAACAGGATCTGCTATTACAGTTTGGc > 1:14255845/1‑35 (MQ=255) aTACGGATCAACAGGATCGGCTAaaaaaaaaaaaa > 1:18225007‑M1/1‑23 (MQ=255) aTACGGATCAACAGGATCGGCTAaaaaaaaaaaaa > 1:7997157‑M1/1‑23 (MQ=255) tACGGATCAACAGGATCGGCTATTACAGTTTGGCt < 1:19072109/35‑1 (MQ=255) aCGGATCAACAGGATCGGCTAaaaaaaaaaaaata > 1:8218042‑M1/1‑21 (MQ=255) aCGGATCAACAGGATCGGCTATTACAGTTTGGCTa < 1:11100213/35‑1 (MQ=255) aCGGATCAACAGGATCGGCTATTACAGTTTGGCTa < 1:5520688/35‑1 (MQ=255) aCGGATCAACAGGATCGGCTATTACAGTTTGGCTa < 1:8319030/35‑1 (MQ=255) cGGATCAACAGGATCGGCTAaaaaaaaaaaaataa > 1:12537491‑M1/1‑20 (MQ=255) cGGATCAACAGGATCGGCTATTACAGTTTGGCTac < 1:15903583/35‑1 (MQ=255) cGGATCAACAGGATCGGCTATTACAGTTTGGCTac < 1:3926316/35‑1 (MQ=255) cGGATCAACAGGATCGGCTATTACAGTTTGGCTac < 1:20499226/35‑1 (MQ=255) cGGATCAACAGGATCGGCTATTACAGTTTGGCTac < 1:20327037/35‑1 (MQ=255) ggATCAACAGGATCGGCTAaaaaaaaaaaaataaa > 1:6154874‑M1/1‑19 (MQ=255) ggATCAACAGGATCGGCTATTACAGTTTGGCTaca < 1:5829380/35‑1 (MQ=255) ggATCAACAGGATCGGCTATTACAGTTTGGCTaca < 1:904504/35‑1 (MQ=255) aTCAACAGGATCGGCTATTACAGTTTGGCTacaac < 1:16415651/35‑1 (MQ=255) aTCAACAGGATCGGCTATTACAGTTTGGCTacaac < 1:20290501/35‑1 (MQ=255) tCAACAGGATCGGCTATTACAGTTTGGCTacaaca < 1:10699882/35‑1 (MQ=255) tCAACAGGATCGGCTATTACAGTTTGGCTacaaca < 1:11777604/35‑1 (MQ=255) tCAACAGGATCGGCTATTACAGTTTGGCTacaaca < 1:5366110/35‑1 (MQ=255) tCAACAGGATCGGCTATTACAGTTTGGCTacaaca < 1:1576529/35‑1 (MQ=255) cAACAGGATCGGCTATTACAGTTTGGCTACAacac < 1:13828096/35‑1 (MQ=255) cAACAGGATCGGCTATTACAGTTTGGCTACAacac < 1:12840757/35‑1 (MQ=255) aaCAGGATCGGCTATTACAGTTTGGCTACAACACg < 1:13081631/35‑1 (MQ=255) aaCAGGATCGGCTATTACAGTTTGGCTACAACACg < 1:10891126/35‑1 (MQ=255) aCAGGATCGGCTGTTACAGTTTGGCTACAACACGc < 1:5472579/35‑1 (MQ=255) aCAGGATCGGCTATTACAGTTTGGCTACAACACGc < 1:7649172/35‑1 (MQ=255) aCAGGATCGGCTATTACAGTTTGGCTACAACACGc < 1:5661151/35‑1 (MQ=255) aCAGGATCGGCTATTACAGTTTGGCTACAACACGc < 1:3587305/35‑1 (MQ=255) aCAGGATCGGCTATTACAGTTTGGCTACAACACGc < 1:11370655/35‑1 (MQ=255) cAGGATCGGCTATTACAGTTTGGCTACAACACGCa < 1:9572045/35‑1 (MQ=255) cAGGATCGGCTATTACAGTTTGGCTACAACACGCa < 1:11569324/35‑1 (MQ=255) cAGGATCGGCTATTACAGTTTGGCTACAACACGCa < 1:12927581/35‑1 (MQ=255) aGGATCGGCTATTACAGTTTGGCTACAACACGCaa < 1:3095188/35‑1 (MQ=255) aGGATCGGCTATTACAGTTTGGCTACAACACGCaa < 1:949521/35‑1 (MQ=255) aGGATCGGCTATTACAGTTTGGCTACAACACGCaa < 1:11290117/35‑1 (MQ=255) aGGATCGGCTATTACAGTTTGGCTACAACACGCaa < 1:10675805/35‑1 (MQ=255) aGGATCGGCTATTACAGTTTGGCTACAACACGCaa < 1:9311324/35‑1 (MQ=255) aGGATCGGCTATTACAGTTTGGCTACAACACGCaa < 1:10349983/35‑1 (MQ=255) ggATCGGCTATTACAGTTTGGCTACAACACGCaaa < 1:15436424/35‑1 (MQ=255) ggATCGGCTATTACAGTTTGGCTACAACACGCaaa < 1:1337741/35‑1 (MQ=255) gATCGGCTATTACAGTTTGGCTACAACACGCAAAt < 1:2619641/35‑1 (MQ=255) gATCGGCTATTACAGTTTGGCTACAACACGCAAAt < 1:10387204/35‑1 (MQ=255) ataggCTATTACAGTTTGGCTACAACACGCAAAtt < 1:20421368/32‑1 (MQ=255) aTCGGCTATTACAGTTTGGCTACAACACGCAAAtt < 1:7421756/35‑1 (MQ=255) tCGGCTATTACAGTTTGGCTACAACACGCAAATTa < 1:10302755/35‑1 (MQ=255) tCGGCTATTACAGTTTGGCTACAACACGCAAATTa < 1:4722829/35‑1 (MQ=255) cGGCTATTACAGTTTGGCTACAACACGCAAATTaa < 1:11273464/35‑1 (MQ=255) cGGCTATTACAGTTTGGCTACAACACGCAAATTaa < 1:466182/35‑1 (MQ=255) ggCTATTACAGTTTGGCTACAACACGCAAATTaaa < 1:14473643/35‑1 (MQ=255) gCTATTACAGTTTGGCTACAACACGCAAATTAAAg > 1:18853922/1‑35 (MQ=255) gCTATTACAGTTTGGCTACAACACGCAAATTAAAg < 1:13676471/35‑1 (MQ=255) cTATTACAGTTTGGCTACAACACGCAAATTAAAGa > 1:4687138/1‑35 (MQ=255) cTATTACAGTTTGGCTACAACACGCAAATTAAAGa > 1:8835047/1‑35 (MQ=255) tATTACAGTTTGGCTACAACACGCAAATTAAAGAt > 1:1665876/1‑35 (MQ=255) tATTACAGTTTGGCTACAACACGCAAATTAAAGAt < 1:1787036/35‑1 (MQ=255) tATTACAGTTTGGCTACAACACGCAAATTAAAGAt > 1:2061680/1‑35 (MQ=255) tATTACAGTTTGGCTACAACACGCAAATTAAAGAt > 1:12072109/1‑35 (MQ=255) tATTACAGTTTGGCTACAACACGCAAATTAAAGAt < 1:5966381/35‑1 (MQ=255) aTTACAGTTTGGCTACAACACGCAAATTAAAGATc < 1:19014180/35‑1 (MQ=255) aTTACAGTTTGGCTACAACACGCAAATTAAAGATc > 1:8484424/1‑35 (MQ=255) aTTACAGTTTGGCTACAACACGCAAATTAAAGATc < 1:20046885/35‑1 (MQ=255) aTTACAGTTTGGCTACAACACGCAAATTAAAGATc < 1:17489613/35‑1 (MQ=255) | AAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATC > REL606/1017910‑1017978 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |