New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 187382 =110 (1.070)13 (0.150) 3/40 NT 14.9% coding (530/813 nt) yaeI predicted phosphatase
?REL606 3669194 = 57 (0.670)coding (1242/2031 nt) malS periplasmic alpha‑amylase precursor

Only 100 of 186 total aligned reads displayed.

TGCCAGCATCAGTCTTGGCAGATTTGCTTCGCTGGCGGGAGGTGGTTTGCATTGTCCGGCCCATAAGTC  >  REL606/187348‑187416
                                  |                                  
cattttgtttttatagaacacaggcagaccagaag                                    >  1:9430612‑M1/35‑35 (MQ=255)
 gCCAGCATCAGTCTTGGCAGATTTGCTTCGCTGGc                                   >  1:3449461/1‑35 (MQ=255)
 gCCAGCATCAGTCTTGGCAGATTTGCTTCGCTGGc                                   >  1:2986150/1‑35 (MQ=255)
 gCCAGCATCAGTCTTGGCAGATTTGCTTCGCTGGc                                   >  1:11297480/1‑35 (MQ=255)
 attttgtttttatagaacaccggcagaccagaaGc                                   <  1:1617130‑M1/2‑1 (MQ=255)
 attttgtttttatagaacaccggcagaccagaaGc                                   <  1:8784817‑M1/2‑1 (MQ=255)
  ttttgtttttatagaacaccggcagaccagaaGCg                                  >  1:19512655‑M1/33‑35 (MQ=255)
  ttttgtttttatagaacaccggcagaccagaaGCg                                  >  1:16766596‑M1/33‑35 (MQ=255)
  ttttgtttttatagaacaccggcagaccagaaGCg                                  >  1:16106640‑M1/33‑35 (MQ=255)
  ccAGCATCAGTCTTGGCAGATTTGCTTCGCTGGCg                                  <  1:13163292/35‑1 (MQ=255)
  ccAGCATCAGTCTTGGCAGATTTGCTTCGCTGGCg                                  >  1:10058323/1‑35 (MQ=255)
   tttgtttttatagaacaccggcagaccagaaGCgg                                 <  1:2737740‑M1/4‑1 (MQ=255)
   tttgtttttatagaacaccggcagaccagaaGCgg                                 >  1:20128452‑M1/32‑35 (MQ=255)
   tttgtttttatagaacaccggcagaccagaaGCgg                                 <  1:18250113‑M1/4‑1 (MQ=255)
   tttgtttttatagaacaccggcagaccagaaGCgg                                 <  1:14505979‑M1/4‑1 (MQ=255)
   tttgtttttatacaacaccggcagaccagaaGCgg                                 >  1:5217732‑M1/32‑35 (MQ=255)
   cAGCATCAGTCTTGGCAGATTTGCTTCGCTGGCgg                                 <  1:19731651/35‑1 (MQ=255)
   cAGCATCAGTCTTGGCAGATTTGCTTCGCTGGCgg                                 <  1:7186305/35‑1 (MQ=255)
    agaaTCAGTCTTGGCAGATTTGCTTCGCTGGCggg                                <  1:18143765/32‑1 (MQ=255)
    aGCATCAGTCTTGGCAGATTTGCTTCGCTGGCggg                                <  1:20581813/35‑1 (MQ=255)
     tgtttttatagaacaccggcagaccagaaGcgggg                               <  1:20355427‑M1/6‑2 (MQ=255)
     tgtttttatagaacaccggcagaccagaaGcgggg                               <  1:5869020‑M1/6‑2 (MQ=255)
     gCATCAGTCTTGGCAGATTTGCTTCGCTGGCgggg                               >  1:6020576/1‑34 (MQ=255)
     gCATCAGTCTTGGCAGATTTGCTTCGCTGGCGGGa                               <  1:3146411/35‑1 (MQ=255)
     gCATCAGTCTTGGCAGATTTGCTTCGCTGGCGGGa                               <  1:19005088/35‑1 (MQ=255)
     gCATCAGTCTTGGCAGATTTGCTTCGCTGGCGGGa                               <  1:8752445/35‑1 (MQ=255)
     gCATCAGTCTTGGCAGATTTGCTTCGCCGGCgggg                               >  1:7025696/1‑34 (MQ=255)
      cATCAGTCTTGGCAGATTTGCTTCGCTGGCggggg                              >  1:3325156/1‑33 (MQ=255)
       aTCAGTCTTGGCAGATTTGCTTCGCTGGCGGGGgg                             >  1:13479194/1‑35 (MQ=255)
        ttttatagaacaccggcagaccagaaGCGGGGggt                            <  1:11961795‑M1/9‑1 (MQ=255)
        tCAGTCTTGGCAGATTTGCTTCGCTGGCGGGAggt                            <  1:8255925/35‑1 (MQ=255)
        tCAGTCTTGGCAGATTTGCTTCGCTGGCGGGAggt                            <  1:13555792/35‑1 (MQ=255)
         tttatagaacaccggcagaccagaaGCGGgagggg                           <  1:14821356‑M1/10‑3 (MQ=255)
         cAGTCTTGGCAGATTTGCTTCGCTGGCGGGGgggg                           >  1:4778953/1‑33 (MQ=38)
         cAGTCTTGGCAGATTTGCTTCGCTGGCGGGAggtg                           <  1:19631414/35‑1 (MQ=255)
         cAGTCTTGGCAGATTTGCTTCGCTGGCGGGAggtg                           <  1:8729151/35‑1 (MQ=255)
          aGTCTTGGCAGATTTGCTTCGCTGGCGGGGggggg                          >  1:7697220/1‑35 (MQ=37)
          aGTCTTGGCAGATTTGCTTCGCTGGCGGGGggggg                          >  1:19244791/1‑35 (MQ=37)
            tCTTGGCAGATTTGCTTCGCTGGCGGGGggggggt                        >  1:11772001/1‑33 (MQ=25)
            tCTTGGCAGATTTGCTTCGCTGGCGGGGggggggt                        >  1:17628158/1‑33 (MQ=25)
            tCTTGGCAGATTTGCTTCGCTGGCGGGAGGTGGtt                        <  1:925795/35‑1 (MQ=255)
            tCTTGGCAGATTTGCTTCGCTGGCGGGAGGTGGtt                        <  1:1716999/35‑1 (MQ=255)
            tCTTGGCAGATTTGCTTCGCTGGCGGGAGGTGGtt                        <  1:4909951/35‑1 (MQ=255)
            atagaacaccggcagaccagaaGCGGGAGGTGGtt                        <  1:5416776‑M1/13‑1 (MQ=255)
             tagaacaccggcagaccagaaGCGGGAGGTTGttt                       <  1:13435265‑M1/14‑1 (MQ=255)
             tagaacaccggcagaccagaaGCGGGAGGTGGttt                       <  1:16852821‑M1/14‑1 (MQ=255)
             tagaacaccggcagaccagaaGCGGGAGGTGGttt                       <  1:13339535‑M1/14‑1 (MQ=255)
             cTTGGCAGATTTGCTTCGCTGGCGGGGGGGGGgtt                       >  1:13980040/1‑35 (MQ=25)
             cTTGGCAGATTTGCTTCGCTGGCGGGAggtggggt                       >  1:12748306/1‑32 (MQ=255)
             cTTGGCAGATTTGCTTCGCTGGCGGGAGGTGGttt                       <  1:1510314/35‑1 (MQ=255)
             cTTGGCAGATTTGCTTCGCTGGCGGGAGGTGGttt                       <  1:16934654/35‑1 (MQ=255)
              ttGGCAGATTTGCTTCGCTGGCGGGGGGGGGgttt                      >  1:2317841/1‑34 (MQ=25)
              ttGGCAGATTTGCTTCGCTGGCGGGGGGGGGGTTg                      >  1:8531114/1‑35 (MQ=25)
              ttGGCAGATTTGCTTCGCTGGCGGGAGGTGGTTTg                      <  1:9280783/35‑1 (MQ=255)
              ttGGCAGATTTGCTTCGCTGGCGGGAGGTGGTTTg                      <  1:2600141/35‑1 (MQ=255)
              ttGGCAGATTTGCTTCGCTGGCGGGAGGTGGTTTg                      <  1:16318343/35‑1 (MQ=255)
              ttGGCAGATTTGCTTCGCTGGCGGGAGGTGGTTTg                      <  1:13707037/35‑1 (MQ=255)
               tGGCAGATTTGCTTCGCTGGCGGGGGGTGGGTTGc                     >  1:18386894/1‑35 (MQ=37)
               tGGCAGATTTGCTTCGCTGGCGGGGGGGTGTTTgg                     >  1:3235693/1‑34 (MQ=25)
               tGGCAGATTTGCTTCGCTGGCGGGGGGGGGgtttt                     >  1:16636188/1‑33 (MQ=21)
               tGGCAGATTTGCTTCGCTGGCGGGGGGGGGGTTgg                     >  1:15563104/1‑34 (MQ=25)
               tGGCAGATTTGCTTCGCTGGCGGGGGGGGGGTTGc                     >  1:15340344/1‑35 (MQ=25)
               tGGCAGATTTGCTTCGCTGGCGGGAGGTGGTTTGc                     <  1:8363944/35‑1 (MQ=255)
               tGGCAGATTTGCTTCGCTGGCGGGAGGTGGTTTGc                     <  1:6773426/35‑1 (MQ=255)
               tGGCAGATTTGCTTCGCTGGCGGGAGGTGGTTTGc                     <  1:9748479/35‑1 (MQ=255)
               tGGCAGATTTGCTTCGCTGGCGGGAGGTGGTTTGc                     <  1:16017388/35‑1 (MQ=255)
               gaacacctgcagaccagaaGCGGGAGGTGGTTtgg                     <  1:16269114‑M1/16‑2 (MQ=255)
                aacaccggcagaccagaaGCGGGAGGTGGTttggg                    <  1:4046951‑M1/17‑3 (MQ=255)
                aacaccggcagaccagaaGCGGGAGGTGGTttggg                    <  1:5142193‑M1/17‑3 (MQ=255)
                aacaccggcagaccagaaGCGGGAGGTGGTttggg                    <  1:19612017‑M1/17‑3 (MQ=255)
                 gCAGATTTGCTTCGCTGGCGGGGGGTGGGTTGcca                   >  1:1722782/1‑33 (MQ=25)
                 gCAGATTTGCTTCGCTGGCGGGAGGTGGTTTGCAt                   <  1:14333767/35‑1 (MQ=255)
                 gCAGATTTGCTTCGCTGGCGGGAGGTGGTTTGCAt                   <  1:7297249/35‑1 (MQ=255)
                  cAGATTTGCTTCGCTGGCGGGAGGTGGTTTGCAtt                  <  1:10168446/35‑1 (MQ=255)
                  cAGATTTGCTTCGCTGGCGGGAGGTGGTTTGCAtt                  <  1:4813626/35‑1 (MQ=255)
                  cAGATTTGCTTCGCTGGCGGGAGGTGGGTTTCAtt                  >  1:8853559/1‑35 (MQ=37)
                   aGATTTGCTTCGCTGGCGGGAGGTGGTTTGCATTg                 <  1:18578107/35‑1 (MQ=255)
                   aGATTTGCTTCGCTGGCGGGAGGTGGTTTGCATTg                 <  1:18051632/35‑1 (MQ=255)
                   aGATTTGCTTCGCTGGCGGGAGGGGGTTTTCATTg                 >  1:3943766/1‑35 (MQ=37)
                    gATTTGCTTCGCTGGCGGGGGGTGGTTTGCAtttt                >  1:627644/1‑33 (MQ=38)
                    atcttGCTTCGCTGGCGGGAGGTGGTTTGCATTGt                <  1:9564878/32‑1 (MQ=255)
                     aTTTGCTTCGCTGGCGGGAGGTGGTTTGCATTGTc               <  1:15635568/35‑1 (MQ=255)
                     aTTTGCTTCGCTGGCGGGAGGTGGTTTGCATTGTc               <  1:15868086/35‑1 (MQ=255)
                       ttGCTTCGCTGGCGGGAGGTGGTTTGCATTGTCCg             <  1:12949992/35‑1 (MQ=255)
                       ttGCTTCGCTGGCGGGAGGTGGTTTGCATTGTCCg             <  1:14246276/35‑1 (MQ=255)
                        tGCTTCGCTGGCGTGAGGTGGTTTGCATTGTCCgg            >  1:10808209/1‑35 (MQ=255)
                        tGCTTCGCTGGCGGGAGGTGGTTTGCATTGTCCgg            <  1:6487501/35‑1 (MQ=255)
                        tGCTTCGCTGGCGGGAGGTGGTTTGCATTGTCCgg            <  1:14730059/35‑1 (MQ=255)
                          cTTCGCTGGCGGGAGGTGGTTTGCATTGTCCGGcc          <  1:12083518/35‑1 (MQ=255)
                           ttCGCTGGCGGGAGGTGGTTTGCATTGTCCGGccc         <  1:3550097/35‑1 (MQ=255)
                           ttCGCTGGCGGGAGGTGGTTTGCATTGTCCGGccc         <  1:4636389/35‑1 (MQ=255)
                            tCGCTGGCGGGAGGTGGTTTGCATTGTCCGGCCCa        <  1:8628622/35‑1 (MQ=255)
                            tCGCTGGCGGGAGGTGGTTTGCATTGTCCGGCCCa        <  1:4102754/35‑1 (MQ=255)
                            tCGCTGGCGGGAGGTGGTTTGCATTGTCCGGCCCa        <  1:4387218/35‑1 (MQ=255)
                             cGCTGGCGGGAGGTGGTTTGCATTGTCCGGCCCAt       <  1:611072/35‑1 (MQ=255)
                             cGCTGGCGGGAGGTGGTTTGCATTGTCCGGCCCAt       <  1:10786508/35‑1 (MQ=255)
                             cGCTGGCGGGAGGTGGTTTGCATTGTCCGGCCCAt       <  1:17975240/35‑1 (MQ=255)
                              gCTGGCGGGAGGTGGTTTGCATTGTCCGGCCCATa      <  1:10720243/35‑1 (MQ=255)
                                 ggCGGGAGGTGGTTTGCATTGTCCGGCCCATAAGt   <  1:17482936/35‑1 (MQ=255)
                                  GCGGGAGGTGGTTTGCATTGTCCGGCCCATAAGTc  <  1:2555609‑M1/35‑1 (MQ=255)
                                  |                                  
TGCCAGCATCAGTCTTGGCAGATTTGCTTCGCTGGCGGGAGGTGGTTTGCATTGTCCGGCCCATAAGTC  >  REL606/187348‑187416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.