Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 281,923 | G→T | 93.3% | intergenic (‑406/‑369) | ykgK ← / → ykgL | predicted regulator/hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 281,923 | 0 | G→T | 93.3% | 11.8 ‑0.4 0.0 | 90 | intergenic (‑406/‑369) | ykgK/ykgL | predicted regulator/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (55/29): ref base (3/3): total (58/32) | ||||||||||
Fisher's exact test strand distribution p-value = 6.62e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TTTTAAGGGTAAGGGATAGAATATAAAACTATGATGAGCTGTCATTGAAGATGATTTGCCAATC > REL606/281891‑281954 | ttttAAGGGTAAGGGATAGAATATAAAACTattat > 1:9570426/1‑35 (MQ=255) ttttAAGGGTAAGGGATAGAATATAAAACTattat < 1:10970027/35‑1 (MQ=255) ttttAAGGGTAAGGGATAGAATATAAAACTattat < 1:16284021/35‑1 (MQ=255) ttttAAGGGTAAGGGATAGAATATAAAACTattat > 1:3851093/1‑35 (MQ=255) ttAAGGGTAAGGGATAGAATATAAAACTAttatga < 1:10020448/35‑1 (MQ=255) ttAAGGGTAAGGGATAGAATATAAAACTAttatga < 1:10397908/35‑1 (MQ=255) ttAAGGGTAAGGGATAGAATATAAAACTAttatga > 1:9416459/1‑35 (MQ=255) ttAAGGGTAAGGGATAGAATATAAAACTAttatga > 1:7642440/1‑35 (MQ=255) ttAAGGGTAAGGGATAGAATATAAAACTAttatga > 1:17313037/1‑35 (MQ=255) ttAAGGGTAAGGGATAGAATATAAAACTAtgatga < 1:12949625/35‑1 (MQ=255) taagggtaagggATAGAATATAAAACTATTATGAg > 1:12307444/1‑35 (MQ=255) taagggtaagggATAGAATATAAAACTATTATGAg > 1:16823503/1‑35 (MQ=255) aagggtaatggATAGAATATAAAACTATTATGAGc > 1:4262480/1‑35 (MQ=37) aagggtaagggATAGAATATAAAACTATTATGAGc > 1:268422/1‑35 (MQ=255) aagggtaagggATAGAATATAAAACTATTATGAGc < 1:14207560/35‑1 (MQ=255) aagggtaagggATAGAATATAAAACTATTATGAGc < 1:11015241/35‑1 (MQ=255) aagggtaagggATAGAATATAAAACTATGATGAGc < 1:977055/35‑1 (MQ=255) agggtaagggATAGAATATAAAACTATTATGAGCt < 1:799815/35‑1 (MQ=255) agggtaagggATAGAATATAAAACTATGATGAGCt > 1:5935971/1‑35 (MQ=255) gtgtaagggATAGAATATAAAACTATTATGAGCTg > 1:19725756/3‑35 (MQ=38) gggtaagggATAGAATATAAAACTATTATGAGCTg > 1:2704780/1‑35 (MQ=255) gggtaagggATAGAATATAAAACTATTATGAGCTg > 1:2183497/1‑35 (MQ=255) gggtaagggATAGAATATAAAACTATTATGAGCTg > 1:8506828/1‑35 (MQ=255) gggtaagggATAGAATATAAAACTATTATGAGCTg > 1:13828128/1‑35 (MQ=255) gggtaagggATAGAATATAAAACTATTATGAGCTg < 1:17907650/35‑1 (MQ=255) gggtaagggATAGAATATAAAACTATTATGAGCTg > 1:7058858/1‑35 (MQ=255) ggtaagggATAGAATATAAAACTATTATGAGCTGt < 1:2967310/35‑1 (MQ=255) ggtaagggATAGAATATAAAACTATTATGAGCTGt > 1:19604424/1‑35 (MQ=255) ggtaagggATAGAATATAAAACTATTATGAGCTGt > 1:8373192/1‑35 (MQ=255) ggtaagggATAGAATATAAAACTATTATGAGCTGt > 1:11595651/1‑35 (MQ=255) ggtaagggATAGAATATAAAACTATGATGAGCTGt < 1:14519990/35‑1 (MQ=255) gtaagggATAGAATATAAAACTATTATGAGCTGTc > 1:2941771/1‑35 (MQ=255) gtaagggATAGAATATAAAACTATTATGAGCTGTc < 1:2888207/35‑1 (MQ=255) gtaagggATAGAATATAAAACTATTATGAGCTGTc > 1:1401076/1‑35 (MQ=255) gtaagggATAGAATATAAAACTATTATGAGCTGTc > 1:15741450/1‑35 (MQ=255) gtaagggATAGAATATAAAACTATTATGAGCTGTc > 1:15423168/1‑35 (MQ=255) taagggATAGAATATAAAACTATTATGAGCTGTCa > 1:12517090/1‑35 (MQ=255) taagggATAGAATATAAAACTATTATGAGCTGTCa > 1:19499646/1‑35 (MQ=255) taagggATAGAATATAAAACTATGATGAGCTGTCa > 1:20402556/1‑35 (MQ=255) taagggATAGAATATAAAACTATGATGAGCTGTCa > 1:11192020/1‑35 (MQ=255) aagggATAGAATATAAAACTATTATGAGCTGTCAt > 1:11262710/1‑35 (MQ=255) aagggATAGAATATAAAACTATTATGAGCTGTCAt > 1:13115147/1‑35 (MQ=255) aagggATAGAATATAAAACTATTATGAGCTGTCAt > 1:17769334/1‑35 (MQ=255) aagggATAGAATATAAAACTATTATGAGCTGTCAt < 1:7702900/35‑1 (MQ=255) agggATAGAATATAAAACTATTATGAGCTGTCAtt > 1:5567772/1‑35 (MQ=255) agggATAGAATATAAAACTATTATGAGCTGTCAtt > 1:43120/1‑35 (MQ=255) agggATAGAATATAAAACTATTATGAGCTGTCAtt < 1:7699730/35‑1 (MQ=255) gggATAGAATATAAAACTATTATGAGCTGTCATTg > 1:17283448/1‑35 (MQ=255) gggATAGAATATAAAACTATTATGAGCTGTCATTg > 1:18767816/1‑35 (MQ=255) ggATAGAATATAAAACTATTATGAGCTGTCATTGa < 1:3668922/35‑1 (MQ=255) gATAGAATATAAAACTATTATGAGCTGTCATTGaa > 1:9256424/1‑35 (MQ=255) gATAGAATATAAAAATATTATGAGCTGTCATTGaa < 1:4549328/35‑1 (MQ=37) aTAGAATATAAAACTATTATGAGCTGTCATTGAAg < 1:20047041/35‑1 (MQ=255) aTAGAATATAAAACTATTATGAGCTGTCATTGAAg > 1:8668734/1‑35 (MQ=255) aTAGAATATAAAACTATTATGAGCTGTCATTGAAg < 1:8049993/35‑1 (MQ=255) aTAGAATATAAAACTATTATGAGCTGTCATTGAAg < 1:16791312/35‑1 (MQ=255) aTAGAATATAAAACTATTATGAGCTGTCATTGAAg > 1:1594320/1‑35 (MQ=255) tAGAATATAAAACTATTATGAGCTGTCATTGAAga > 1:8113525/1‑35 (MQ=255) tAGAATATAAAACTATTATGAGCTGTCATTGAAga > 1:5502413/1‑35 (MQ=255) tAGAATATAAAACTATTATGAGCTGTCATTGAAga > 1:9543187/1‑35 (MQ=255) tAGAATATAAAACTATTATGAGCTGTCATTGAAga > 1:1068812/1‑35 (MQ=255) tAGAAAATAAAACTATTATGAGCTGTCATTGAAga < 1:1206909/35‑1 (MQ=38) aGAATATAAAACTATTATGAGCTGTCATTGAAgat < 1:6768516/35‑1 (MQ=255) gAATATAAAACTATTATGAGCTGTCATTGAAgatg < 1:18909260/35‑1 (MQ=255) gAATATAAAACTATTATGAGCTGTCATTGAAgatg > 1:13545940/1‑35 (MQ=255) gAATATAAAACTATTATGAGCTGTCATTGAAgatg > 1:7796913/1‑35 (MQ=255) gAATATAAAACTATTATGAGCTGTCATTGAAgatg > 1:17519360/1‑35 (MQ=255) aaTATAAAACTATTATGAGCTGTCATTGAAgatga < 1:11659686/35‑1 (MQ=255) aaTATAAAACTATTATGAGCTGTCATTGAAgatga > 1:13450738/1‑35 (MQ=255) aaTATAAAACTATTATGAGCTGTCATTGAAgatga > 1:4466579/1‑35 (MQ=255) aaTATAAAACTATTATGAGCTGTCATTGAAgatga < 1:16755898/35‑1 (MQ=255) atatAAAACTATTATGAGCTGTCATTGAAgatgat > 1:4337478/1‑35 (MQ=255) atatAAAACTATTATGAGCTGTCATTGAAgatgat > 1:178751/1‑35 (MQ=255) tataAAACTATTATGAGCTGTCATTGAAGATGAtt < 1:12294254/35‑1 (MQ=255) ataAAACTATTATGAGCTGTCATTGAAGATGAttt > 1:17298523/1‑35 (MQ=255) taAAACTATTATGAGCTGTCATTGAAGATGATTTg < 1:12491844/35‑1 (MQ=255) taAAACTATTATGAGCTGTCATTGAAGATGATTTg > 1:9527624/1‑35 (MQ=255) taAAACTATTATGAGCTGTCATTGAAGATGATTTg < 1:1741341/35‑1 (MQ=255) taAAACTATTATGAGCTGTCATTGAAGATGATTTg < 1:5672279/35‑1 (MQ=255) taAAACTATTATGAGCTGTCATTGAAGATGATTTg > 1:5456841/1‑35 (MQ=255) aaaaCTATTATTAGCTGTCATTGAAGATGATTTGc > 1:12994884/1‑35 (MQ=37) aaaaCTATTATGAGCTGTCATTGAAGATGATTTGc > 1:20611423/1‑35 (MQ=255) aaaCTATTATGAGCTGTCATTGAAGATGATTTGcc < 1:8750400/35‑1 (MQ=255) aaCTATTATGAGCTGTCATTGAAGATGATTTGCCa < 1:10926898/35‑1 (MQ=255) aCTATTATGAGCTGTCATTGAAGATGATTTGCCaa > 1:3257439/1‑35 (MQ=255) aCTATTATGAGCTGTCATTGAAGATGATTTGCCaa < 1:3763859/35‑1 (MQ=255) aCTATTATGAGCTGTCATTGAAGATGATTTGCCaa > 1:12210291/1‑35 (MQ=255) aCTATTATGAGCTGTCATTGAAGATGATTTGCCaa < 1:18343058/35‑1 (MQ=255) aCTATTATGAGCTGTCATTGAAGATGATTTGCCaa > 1:6007230/1‑35 (MQ=255) cTATTATGAGCTGTCATTGAAGATGATTTGCCAAt > 1:15120251/1‑35 (MQ=255) cTATTATGAGCTGTCATTGAAGATGATTTGCCAAt > 1:12098323/1‑35 (MQ=255) cTATTATGAGCTGTCATTGAAGATGATTTGCCAAt < 1:7257393/35‑1 (MQ=255) cTATTATGAGCTGTCATTGAAGATGATTTGCCAAt > 1:11834425/1‑35 (MQ=255) cTATGATGAGCTGTCATTGAAGATGATTTGCCAAt < 1:486624/35‑1 (MQ=255) tATTATGAGCTGTCATTGAAGATGATTTGCCAATc > 1:14630298/1‑35 (MQ=255) tATTATGAGCTGTCATTGAAGATGATTTGCCAATc > 1:8439959/1‑35 (MQ=255) tATTATGAGCTGTCATTGAAGATGATTTGCCAATc < 1:18406341/35‑1 (MQ=255) tATTATGAGCTGTCATTGAAGATGATTTGCCAATc < 1:18422583/35‑1 (MQ=255) tATTATGAGCTGTCATTGAAGATGATTTGCCAATc > 1:7380883/1‑35 (MQ=255) tATTATGAGCTGTCATTGAAGATGATTTGCCAATc > 1:10900132/1‑35 (MQ=255) | TTTTAAGGGTAAGGGATAGAATATAAAACTATGATGAGCTGTCATTGAAGATGATTTGCCAATC > REL606/281891‑281954 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |