Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,648,342 | IS1 (–) +9 bp | 28.2% | intergenic (+195/‑221) | ynfM → / → asr | predicted transporter/acid shock protein precursor |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1323488 | NA (NA) | 22 (0.210) | 18/48 | NT | 26.6% | noncoding (768/768 nt) | IS1 | repeat region |
? | REL606 | = 1648350 | 38 (0.590) | intergenic (+203/‑221) | ynfM/asr | predicted transporter/acid shock protein precursor | |||||
* | ? | REL606 | 1648342 = | 36 (0.600) | 7 (0.090) | 6/36 | NT | 13.1% | intergenic (+195/‑229) | ynfM/asr | predicted transporter/acid shock protein precursor |
? | REL606 | = 3024712 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
Only 100 of 148 total aligned reads displayed.
TAAAACACTATCAATAAGTTGGAGTCATTACCAAGGCGACTATCATTATCAAATTCATTATCAGGT > REL606/1323457‑1323522 | tAAAACGCTATCAATAAGTTGGAGTCATTACCAAg < 1:18671969/35‑1 (MQ=12) tAAAACACTATCAATAAGTTGGAGTCATTACCAAg < 1:9641903/35‑1 (MQ=32) tAAAACACTATCAATAAGTTGGAGTCATTACCAAg < 1:3887549/35‑1 (MQ=32) tAAAACACTATCAATAAGTTGGAGTCATTACCAAg < 1:18519323/35‑1 (MQ=32) aaaaCACTATCAATAAGTTGGAGTCATTACCAAgg < 1:5174835/35‑1 (MQ=35) aaaCACTATCAATAAGTTGGAGTCATTACCAAGGc < 1:19230942/35‑1 (MQ=38) aaaCACTATCAATAAGTTGGAGTCATTACAAAGGc < 1:412931/35‑1 (MQ=255) aaCACTATCAATAAGTTGGAGTCATTACCAAGGCg > 1:8627463/1‑35 (MQ=40) acacTATCAATAAGTTGGAGTCATTACCAAGGCGa < 1:13475173/35‑1 (MQ=255) acacTATCAATAAGTTGGAGTCATTACCAAGGCGa > 1:7826216/1‑35 (MQ=255) acacTATCAATAAGTTGGAGTCATTACCAAGGCGa > 1:2259901/1‑35 (MQ=255) cccTATCAATAAGTTGGAGTCATTACCAAGGCGAc < 1:26478/33‑1 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCAAGGCGAc < 1:3343455/35‑1 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCAAGGCGAc > 1:2010271/1‑35 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCAAGGCGAc < 1:16045761/35‑1 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCAAGGCGAc < 1:4000773/35‑1 (MQ=255) acTATCAATAAGTTGGAGTCATTACCAAGGCGACt < 1:677448/35‑1 (MQ=255) acTATCAATAAGTTGGAGTCATTACCAAGGCGACt < 1:4803917/35‑1 (MQ=255) acTATCAATAAGTTGGAGTCATTACCAAGGCGACt > 1:4665036/1‑35 (MQ=255) cTATCAATAAGTTGGAGTCATTACCAAGGCGACTa < 1:1007343/35‑1 (MQ=255) cTATCAATAAGTTGGAGTCATTACCAAGGCGACTa < 1:1793509/35‑1 (MQ=255) cTATCAATAAGTTGGAGTCATTACCAAGGCGACTa > 1:1308196/1‑35 (MQ=255) tATCAATAAGTTGGAGTCATTACCAAGGCGACTAt < 1:4157344/35‑1 (MQ=255) tATCAATAAGTTGGAGTCATTACCAAGGCGACTAt < 1:1141183/35‑1 (MQ=255) tATCAATAAGTTGGAGTCATTACCAAGGCGACTAt < 1:445099/35‑1 (MQ=255) aTCAATAAGTTGGAGTCATTACCAAGGCGACTATc < 1:6817269/35‑1 (MQ=255) aTCAATAAGTTGGAGTCATTACCAAGGCGACTATc < 1:7135711/35‑1 (MQ=255) aTCAATAAGTTGGAGTCATTACCAAGGCGACTATc > 1:12163725/1‑35 (MQ=255) aTCAATAAGTTGGAGTCATTACCAAGGCGACTATc > 1:7856513/1‑35 (MQ=255) tCAATAAGTTGTAGTCATTACCAAGGCGACTATCa > 1:2814961/1‑35 (MQ=255) tCAATAAGTTGGAGTCATTACCAAGGCGACTATCa > 1:16898638/1‑35 (MQ=255) cAATAAGTTGGAGTCATTACCAAGGCGACTATCAt > 1:4361960/1‑35 (MQ=255) cAATAAGTTGGAGTCATTACCAAGGCGACTATCAt > 1:2847289/1‑35 (MQ=255) cAATAAGTTGGAGTCATTACCAAGGCGACTATCAt > 1:3176632/1‑35 (MQ=255) cAATAAGTTGGAGTCATTACCAAGGCGACTATCAt < 1:11612332/35‑1 (MQ=255) cAATAAGTTGGAGTCATTACCAAGGCGACTATCAt > 1:12171537/1‑35 (MQ=255) cAATAAGTTGGAGTCATTACCAAGGCGACTATCAt < 1:3636209/35‑1 (MQ=255) aaTAAGTTGGAGTCATTACCAAGGCTACTATCAtt > 1:9160855/1‑35 (MQ=255) aaTAAGTTGGAGTCATTACCAAGGCGACTATCAtt > 1:4375378/1‑35 (MQ=255) aaTAAGTTGGAGTCATTACCAAGGCGACTATCAtt < 1:2699058/35‑1 (MQ=255) aaTAAGTTGGAGTCATTACCAAGGCGACTATCAtt > 1:7836379/1‑35 (MQ=255) aaTAAGTGGGAGTCATTACCAAGGCGACTATCAtt < 1:17384956/35‑1 (MQ=255) aTAAGTTGGAGTCATTACCAAGGCGACTATCATTa > 1:11082748/1‑35 (MQ=255) aTAAGTTGGAGTCATTACCAAGGCGACTATCATTa > 1:13373537/1‑35 (MQ=255) aTAAGTTGGAGTCATTACCAAGGCGACTATCATTa > 1:19821029/1‑35 (MQ=255) aTAAGTTGGAGTCATTACCAAGGCGACTATCATTa > 1:1989680/1‑35 (MQ=255) aTAAGTTGGAGTCATTACCAAGGCGACTATCATTa < 1:18046494/35‑1 (MQ=255) aTAAGTTGGAGTCATTACCAAGGCGACTATCATTa > 1:12762005/1‑35 (MQ=255) tAAGTTGGAGTCATTACCAAGGCGACTATCATTAt > 1:11957689/1‑35 (MQ=255) aaGTTGGAGTCATTACCAAGGCGACTATCATTATc > 1:3419401/1‑35 (MQ=255) aaGTTGGAGTCATTACCAAGGCGACTATCATTATc > 1:14093435/1‑35 (MQ=255) aGTTGGAGTCATTACCAAGGCGACTATCATTATCa < 1:4629883/35‑1 (MQ=255) aGTTGGAGTCATTACCAAGGCGACTATCATTATCa > 1:5843828/1‑35 (MQ=255) aGTTGGAGTCATTACCAAGGCGACTATCATTATCa > 1:19226317/1‑35 (MQ=255) aGTTGGAGTCATTACCAAGGCGACTATCATTATCa > 1:13098346/1‑35 (MQ=255) aGTTGGAGTCATTACCAAGGCGACTATCATTATCa < 1:14768529/35‑1 (MQ=255) aGTTGGAGTCATTACCAAGGCGACTATCATTATCa < 1:1608228/35‑1 (MQ=255) aGTTGGAGTCATTACCAAGGCGACTATCATTATCa < 1:7781348/35‑1 (MQ=255) tctGGAGTCATTACCAAGGCGACTATCATTATCaa < 1:1592443/33‑1 (MQ=255) gTTGGAGTCATTACCAAGGCGACTATCATTATCaa > 1:1190135/1‑35 (MQ=255) gTTGGAGTCATTACCAAGGCGACTATCATTATCaa < 1:10945511/35‑1 (MQ=255) gTTGGAGTCATTACCAAGGCGACTATCATTATCaa > 1:9285996/1‑35 (MQ=255) gTTGGAGTCATTACCAAGGCGACTATCATTATCaa < 1:16596230/35‑1 (MQ=255) gTTGGAGTCATTACCAAGGCGACTATCATTATCaa > 1:10623510/1‑35 (MQ=255) gTTGGAGTCATTACCAAGGCGACTATCATTATCaa < 1:2911573/35‑1 (MQ=255) gTTGGAGTCATTACCAAGGCGACTATCATTATCaa > 1:7155059/1‑35 (MQ=255) tGGAGTCATTACCAAGGCGACTATCATTATCAAAt > 1:14683965/1‑35 (MQ=255) tGGAGTCATTACCAAGGCGACTATCATTATCAAAt < 1:18576306/35‑1 (MQ=255) ggAGTCATTACCAAGGCGACTATCATTATCAAAtt < 1:7615648/35‑1 (MQ=255) gAGTCATTACCAAGGCGACTATCATTATCAAATTc > 1:6088790/1‑35 (MQ=255) aGTCATTACCAAGGCGACTATCATTATCAAATTCa > 1:5314448/1‑35 (MQ=255) aGTCATTACCAAGGCGACTATCATTATCAAATTCa < 1:15784089/35‑1 (MQ=255) gTCATTACCAAGGCGACTATCATTATCAAATTCAt < 1:20000294/35‑1 (MQ=255) tCATTACCAAGGCGACTATCATTATCAAATTCAtt > 1:8471578/1‑35 (MQ=255) tCATTACCAAGGCGACTATCATTATCAAATTCAtt > 1:7631901/1‑35 (MQ=255) tCATTACCAAGGCGACTATCATTATCAAATTCAtt > 1:6336216/1‑35 (MQ=255) tCATTACCAAGGCGACTATCATTATCAAATTCAtt < 1:985198/35‑1 (MQ=255) tCATTACCAAGGCGACTATCATTATCAAATTCAtt < 1:2982995/35‑1 (MQ=255) tCATTACCAAGGCGACTATCATTATCAAATTCAtt > 1:2485719/1‑35 (MQ=255) tCATTACCAAGGCGACTATCATTATCAAATTCAtt > 1:2240972/1‑35 (MQ=255) aTTACCAAGGCGACTATCATTATCAAATTCATTAt > 1:10508485/1‑35 (MQ=255) ttACCAAGGCGACTATCATTATCAAATTCATTATc < 1:6458308/35‑1 (MQ=255) ttACCAAGGCGACTATCATTATCAAATTCATTATc > 1:8269818/1‑35 (MQ=255) tcccAAGGCGACTATCATTATCAAATTCATTATCa < 1:10795207/33‑1 (MQ=255) tACCAAGGCGACTATCATTATCAAATTCATTATCa < 1:5817584/35‑1 (MQ=255) tACCAAGGCGACTATCATTATCAAATTCATTATCa > 1:20496067/1‑35 (MQ=255) tACCAAGGCGACTATCATTATCAAATTCATTATCa < 1:11037981/35‑1 (MQ=255) tACCAAGGCGACTATCATTATCAAATTCATTATCa < 1:16645595/35‑1 (MQ=255) tACCAAGGCGACTATCATTATCAAATTCATTATCa > 1:152213/1‑35 (MQ=255) aCCAAGGCGACTATCATTATCAAATTCATTATCAg < 1:10116899/35‑1 (MQ=255) aCCAAGGCGACTATCATTATCAAATTCATTATCAg > 1:10696051/1‑35 (MQ=255) aCCAAGGCGACTATCATTATCAAATTCATTATCAg > 1:12708747/1‑35 (MQ=255) aCCAAGGCGACTATCATTATCAAATTCATTATCAg < 1:18516096/35‑1 (MQ=255) aCCAAGGCGACTATCATTATCAAATTCATTATCAg < 1:20196642/35‑1 (MQ=255) ccAAGGCGACTATCATTATCAAATTCATTATCAgg < 1:8071630/35‑1 (MQ=255) ccAAGGCGACTATCATTATCAAATTCATTATCAgg < 1:14039419/35‑1 (MQ=255) ccAAGGCGACTATCATTATCAAATTCATTATCAgg < 1:17056320/35‑1 (MQ=255) cAAGGCGACTATCATTATCAAATTCATTATCAGGt > 1:17419568/1‑35 (MQ=255) cAAGGCGACTATCATTATCAAATTCATTATCAGGt > 1:5631936/1‑35 (MQ=255) cAAGGCGACTATCATTATCAAATTCATTATCAGGt < 1:6057365/35‑1 (MQ=255) | TAAAACACTATCAATAAGTTGGAGTCATTACCAAGGCGACTATCATTATCAAATTCATTATCAGGT > REL606/1323457‑1323522 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |