New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 107214974 (0.720)4 (0.040) 3/42 NT 4.8% coding (320/2745 nt) torS hybrid sensory histidine kinase in two‑component regulatory system with TorR
?REL606 3712714 = 106 (1.030)coding (451/684 nt) ECB_03459 conserved hypothetical protein

Only 100 of 139 total aligned reads displayed.

ACGGGAGATCTCCTGCTCCTGTTGTTCAATAGCGGTGGTATCAAAACCTTGTTCCCGTAACGCTTGCAG  >  REL606/1072115‑1072183
                                  |                                  
acgGGAGATCTCCTGCTCCTGTTGTTCAATAGCgg                                    >  1:9365259/1‑35 (MQ=255)
acgGGAGATCTCCTGCTCCTGTTGTTCAATAGCgg                                    <  1:19410740/35‑1 (MQ=255)
acgGGAGATCTCCTGCTCCTGTTGTTCAATAGCgg                                    <  1:12950627/35‑1 (MQ=255)
acgGGAGATCTCCTGCTCCTGTTGTTCAATAGCgg                                    >  1:8374499/1‑35 (MQ=255)
acgGGAGATCTCCTGCTCCTGTTGTTCAATAGCgg                                    <  1:11596919/35‑1 (MQ=255)
 cgGGAGATCTCCTGCTCCTGTTGTTCAATAGCggt                                   <  1:17732762/35‑1 (MQ=255)
 cGGGAGATCTCCTGCTCCTGTTGTTCAATAGCGGg                                   >  1:9933658‑M1/1‑34 (MQ=255)
  gggAGATCTCCTGCTCCTGTTGTTCAATAGCggtg                                  <  1:8047345/35‑1 (MQ=255)
  gggAGATCTCCTGCTCCTGTTGTTCAATAGCggtg                                  <  1:18038939/35‑1 (MQ=255)
  gggAGATCTCCTGCTCCTGTTGTTCAATAGCggtg                                  <  1:11032928/35‑1 (MQ=255)
  gggAGATCTCCTGCTCCTGTTGTTCAATAGCGGgg                                  >  1:9198640‑M1/1‑33 (MQ=255)
  gggAGATCTCCTGCTCCTGTTGTTCAATAGCGGgg                                  >  1:17598033‑M1/1‑33 (MQ=255)
  gggAGATCTCCTGCTCCTGTTGTTCAATAGCGGgg                                  >  1:2197527‑M1/1‑33 (MQ=255)
   ggAGATCTCCTGCTCCTGTTGTTCAATAGCggtgg                                 <  1:4962540/35‑1 (MQ=255)
   ggAGATCTCCTGCTCCTGTTGTTCAATAGCGGggg                                 >  1:8162066‑M1/1‑32 (MQ=255)
    gagaTCTCCTGCTCCTGTTGTTCAATAGCggtggt                                <  1:61792/35‑1 (MQ=255)
    gagaTCTCCTGCTCCTGTTGTTCAATAGCggtggt                                <  1:4624150/35‑1 (MQ=255)
    gagaTCTCCTGCTCCTGTTGTTCAATAGCggtggg                                >  1:15296553/1‑34 (MQ=255)
    gagaTCTCCTGCTCCTGTTGTTCAATAGCggtggg                                >  1:9090272/1‑34 (MQ=255)
    gagaTCTCCTGCTCCTGTTGTTCAATAGCTGgggt                                >  1:4028011‑M1/1‑31 (MQ=255)
    gagaTCTCCTGCTCCTGTTGTTCAATAGCGGgggg                                >  1:15178854‑M1/1‑31 (MQ=255)
     agaTCTCCTGCTCCTGTTGTTCAATAGCggtgggg                               >  1:15555617/1‑33 (MQ=255)
     agaTCTCCTGCTCCTGTTGTTCAATAGCGGggggg                               >  1:17059404‑M1/1‑30 (MQ=255)
     agaTCTCCTGCTCCTGTTGTTCAATAGCGGggggg                               >  1:16736409‑M1/1‑30 (MQ=255)
     agaTCTCCTGCTCCTGTTGTTCAATAGCGGggggg                               >  1:18625880‑M1/1‑30 (MQ=255)
     agaTCTCCTGCTCCTGTTGTTCAATAGCGGTGGTa                               <  1:1997583/35‑1 (MQ=255)
      gaTCTCCTGCTCCTGTTGTTCAATAGCGGgggggt                              >  1:3747025‑M1/1‑29 (MQ=255)
      gaTCTCCTGCTCCTGTTGTTCAATAGCGGTGGTAt                              <  1:5258125/35‑1 (MQ=255)
      gaTCTCCTGCTCCTGTTGTTCAATAGCGGTGGTAt                              <  1:7908641/35‑1 (MQ=255)
       aTCTCCTGCTCCTGTTGTTCAATAGCGGgggggtt                             >  1:17586656‑M1/1‑28 (MQ=255)
       aTCTCCTGCTCCTGTTGTTCAATAGCGGggggggt                             >  1:10350192‑M1/1‑28 (MQ=255)
       aTCTCCTGCTCCTGTTGTTCAATAGCGGTGGTATc                             <  1:19071567/35‑1 (MQ=255)
       aTCTCCTGCTCCTGTTGTTCAATAGCGGTGGTATc                             <  1:4386469/35‑1 (MQ=255)
        tctcCTGCTCCTGTTGTTCAATAGCGGTGGTATCa                            <  1:12001104/35‑1 (MQ=255)
        tctcCTGCTCCTGTTGTTCAATAGCGGTGGTATCa                            <  1:19697325/35‑1 (MQ=255)
        tctcCTGCTCCTGTTGTTCAATAGCGGTGGTATCa                            <  1:4627274/35‑1 (MQ=255)
         ctcctgctcctgTTGTTCAATAGCGGTGGTATCaa                           <  1:3897357/35‑1 (MQ=255)
          tcctgctcctgTTGTTCAATAGCGGTGGTATCaaa                          <  1:4738815/35‑1 (MQ=255)
          tcctgctactgTTGTTCAATAGCGGTGGTATCaaa                          <  1:14181855/35‑1 (MQ=255)
           cctgctcctgTTGTTCAATAGCGGTGGTATCaaan                         <  1:15062579/35‑1 (MQ=255)
           cctgctcctgTTGTTCAATAGCGGTGGTATCaaaa                         <  1:12074474/35‑1 (MQ=255)
           cctgctcctgTTGTTCAATAGCGGTGGTATCaaaa                         <  1:19648151/35‑1 (MQ=255)
           cctgctcctgTTGTTCAATAGCGGTGGTATCaaaa                         <  1:9446700/35‑1 (MQ=255)
            ctgctcctgTTGTTCAATAGCGGgggggttaaaaa                        >  1:20180195‑M1/1‑23 (MQ=255)
            ctgctcctgTTGTTCAATAGCGGTGGTATCAAAAc                        <  1:12920136/35‑1 (MQ=255)
            ctgctcctgTTGTTCAATAGCGGTGGTATCAAAAc                        <  1:7411610/35‑1 (MQ=255)
            ctgctcctgTTGTTCAATAGCGGTGGTATCAAAAc                        <  1:11805948/35‑1 (MQ=255)
             tgctcctgTTGTTCAATAGCGGTGGTATCAAAAcc                       <  1:18901125/35‑1 (MQ=255)
             tgctcctgTTGTTCAATAGCGGTGGTATCAAAAcc                       <  1:16320756/35‑1 (MQ=255)
              gctcctgTTGTTCAATAGCGGgggggtgaaaaacc                      >  1:899909‑M1/1‑21 (MQ=255)
              gctcctgTTGTTCAATAGCGGgggggggaaaaacc                      >  1:16091670‑M1/1‑21 (MQ=255)
              gctcctgTTGTTCAATAGCGGTGGTATCAAAACCt                      <  1:16115285/35‑1 (MQ=255)
              gctcctgTTGTTCAATAGCGGTGGTATCAAAACCt                      <  1:10832795/35‑1 (MQ=255)
               ctcctgTTGTTCAATAGCGGgggggtgaaaaacct                     >  1:6755369‑M1/1‑20 (MQ=255)
               ctcctgTTGTTCAATAGCGGGGGGGTCAAAAACtt                     >  1:10390681/1‑35 (MQ=19)
                tcctgTTGTTCAATAGCGGTGGTATCAAAACCTTg                    <  1:19841605/35‑1 (MQ=255)
                     ttgttCAATAGCTGTGGTATCAAAACCTTGTTccc               >  1:12526341/1‑35 (MQ=255)
                     ttgttCAATAGCGGTGGTATCAAAACCTTGTTccc               <  1:7467073/35‑1 (MQ=255)
                     ttgttCAATAGCGGTGGTATCAAAACCTTGTTccc               <  1:16067663/35‑1 (MQ=255)
                     ttgttCAATAGCGGTGGTATCAAAACCTTGTTccc               <  1:6520779/35‑1 (MQ=255)
                     ttgttCAATAGCGGTGGTATCAAAACCTTGTTccc               <  1:19772733/35‑1 (MQ=255)
                      tgttCAATAGCGGTGGTATCAAAACCTTGTTCCCg              <  1:922140/35‑1 (MQ=255)
                      tgttCAATAGCGGTGGTATCAAAACCTTGTTCCCg              <  1:9289397/35‑1 (MQ=255)
                      tgttCAATAGCGGTGGTATCAAAACCTTGTTCCCg              <  1:16633030/35‑1 (MQ=255)
                      tgttCAATAGCGGTGGTATCAAAACCTTGTTCCCg              <  1:2458375/35‑1 (MQ=255)
                      tgttCAATAGCGGTGGTATCAAAACCTTGTTCCCg              <  1:2402762/35‑1 (MQ=255)
                      tgttCAATAGCGGTGGTATCAAAACCTTGTTCCCg              <  1:17169485/35‑1 (MQ=255)
                      tgttCAATAGCGCTGGTATCAAAACCTTGTTCCCg              >  1:6910506/1‑35 (MQ=255)
                       gttCAATAGCGGTGGTATCAAAACCTTGTTCCCGt             <  1:14313667/35‑1 (MQ=255)
                       gttCAATAGCGGTGGTATCAAAACCTTGTTCCCGt             <  1:19188427/35‑1 (MQ=255)
                         tCAATAGCGTTGGTATCAAAACCTTGTTCCCGTaa           >  1:6898473/1‑35 (MQ=255)
                         tCAATAGCGGTGGTATCAAAACCTTGTTCCCGTaa           <  1:13672263/35‑1 (MQ=255)
                         tCAATAGCGGTGGTATCAAAACCTTGTTCCCGTaa           <  1:12360227/35‑1 (MQ=255)
                          cAATAGCGGTGGTATCAAAACCTTGTTCCCGTagc          <  1:7644455/35‑3 (MQ=255)
                          cAATAGCGGTGGTATCAAAACCTTGTTCCCGTAAc          <  1:8050267/35‑1 (MQ=255)
                          cAATAGCGGTGGTATCAAAACCTTGTTCCCGTAAc          <  1:11832960/35‑1 (MQ=255)
                          cAATAGCGGTGGTATCAAAACCTTGTTCCCGTAAc          <  1:16358307/35‑1 (MQ=255)
                          cAATAGCGGTGGTATCAAAACCTTGTTCCCGTAAc          <  1:14084139/35‑1 (MQ=255)
                          cAATAGCGGTGGTATCAAAACCTTGTTCCCGTAAc          <  1:2917824/35‑1 (MQ=255)
                           aaTAGCGGTGGTATCAAAACCTTGTTCCCGTAACg         <  1:723881/35‑1 (MQ=255)
                           aaTAGCGGTGGTATCAAAACCTTGTTCCCGTAACg         <  1:14787343/35‑1 (MQ=255)
                            aTAGCGGTGGTATCAAAACCTTGTTCCCGTAACGc        <  1:17962561/35‑1 (MQ=255)
                            aTAGCGGTGGTATCAAAACCTTGTTCCCGTAACGc        <  1:3816907/35‑1 (MQ=255)
                            aTAGCGGTGGTATCAAAACCTTGTTCCCGTAACGc        <  1:8978816/35‑1 (MQ=255)
                              aGCGGTGGTATCAAAACCTTGTTCCCGTAACGCtt      <  1:7170380/35‑1 (MQ=255)
                              aGCGGTGGTATCAAAACCTTGTTCCCGTAACGCtt      <  1:9676781/35‑1 (MQ=255)
                              aGCGGTGGTATCAAAACCTTGTTCCCGTAACGCtt      <  1:16555969/35‑1 (MQ=255)
                              aGCGGTGGTATCAAAACCTTGTTCCCGTAACGCtt      <  1:3576441/35‑1 (MQ=255)
                               gCGGTGGTATCAAAACCTTGTTCCCGTAACGCTTg     <  1:4187640/35‑1 (MQ=255)
                                cGGTGGTATCAAAACCTTGTTCCCGTAACGCTTgc    <  1:347999/35‑1 (MQ=255)
                                cGGTGGTATCAAAACCTTGTTCCCGCAACGATTgc    >  1:7961046/1‑35 (MQ=37)
                                cGGTGGGATCAAAACCTTGTTCCCGTAACGCTTgc    >  1:5897610/1‑35 (MQ=255)
                                 ggtggtATCAAAACCTTGTTCCCGTAACGCTTgca   <  1:20119352/35‑1 (MQ=255)
                                 ggtggtATCAAAACCTTGTTCCCGTAACGCTTgca   <  1:3015954/35‑1 (MQ=255)
                                 ggtggtATCAAAACCTTGTTCCCGTAACGCTTgca   <  1:3208756/35‑1 (MQ=255)
                                 ggtggtATCAAAACCTTGTTCCCGTAACGCTTgca   >  1:11214693/1‑35 (MQ=255)
                                 ggtggtATCAAAACCTTGTTCCCGTAACGCTTgca   >  1:12219265/1‑35 (MQ=255)
                                  gtggtATCAAAACCTTGTTCCCGTAACGCTTgcag  <  1:13371634/35‑1 (MQ=255)
                                  gtggtATCAAAACCTTGTTCCCGTAACGCTTgcag  >  1:18149657/1‑35 (MQ=255)
                                  gtggtATCAAAACCTTGTTCCCGTAACGCTTgcag  <  1:12668522/35‑1 (MQ=255)
                                  |                                  
ACGGGAGATCTCCTGCTCCTGTTGTTCAATAGCGGTGGTATCAAAACCTTGTTCCCGTAACGCTTGCAG  >  REL606/1072115‑1072183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.