Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 2,333,538 +T 100% intergenic (+34/+34) ECB_02200 → / ← nuoN YadA protein/NADH dehydrogenase subunit N

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6062,333,5381.→T100.0% 197.8 71intergenic (+34/+34)ECB_02200/nuoNYadA protein/NADH dehydrogenase subunit N
Reads supporting (aligned to +/- strand):  new base (22/49):  ref base (0/0):  total (22/49)

Only 100 of 105 total aligned reads displayed.

ATATAAACCGTCCAACATTATGGGGTCAGTTCACATGTCGGCGGCTTTCTGACTTACAAACTAACA  >  REL606/2333504‑2333569
                                   |                                
atatAGACCGTCCAACATTATGGGGTCAGTTcaca                                   >  1:5657189/1‑35 (MQ=255)
atatAAACCGTCCAACATTATGGGGTCAGTTcaca                                   <  1:13785742/35‑1 (MQ=255)
atatAAACCGTCCAACATTATGGGGTCAGTTcaca                                   <  1:5611476/35‑1 (MQ=255)
 tataAACCGTCCAACATTATGGGGTCAGTTCACAt                                 >  1:8146048/1‑35 (MQ=255)
 tataAACCGTCCAACATTATGGGGTCAGTTCACAt                                 >  1:18747832/1‑35 (MQ=255)
 tataAACCGTCCAACATTATGGGGTCAGTTCACAt                                 <  1:8120661/35‑1 (MQ=255)
 tataAACCGTCCAACATTATGGGGTCAGTTCACAt                                 >  1:4570736/1‑35 (MQ=255)
 tataAACCGTCCAACATTATGGGGTCAGTTCACAt                                 >  1:4810474/1‑35 (MQ=255)
 tataAACCGTCCAACATTATGGGGTCAGTTCACAt                                 <  1:2046524/35‑1 (MQ=255)
 tataAACCGTCCAACATTATGGGGTCAGTTCACAt                                 <  1:12501974/35‑1 (MQ=255)
 tataAACCGTCCAACATTATGGGGTCAGTTCACAt                                 <  1:347312/35‑1 (MQ=255)
 tataAACCGTCCAACATTATGGGGTCAGTTCACAt                                 >  1:17059632/1‑35 (MQ=255)
  ataAACCGTCCAACATTATGGGGTCAGTTCACAtt                                <  1:3888858/35‑2 (MQ=255)
  ataAACCGTCCAACATTATGGGGTCAGTTCACAtt                                <  1:15211209/35‑2 (MQ=255)
  ataAACCGTCCAACATTATGGGGTCAGTTCACAtt                                >  1:13225227/1‑34 (MQ=255)
  ataAACCGTCCAACATTATGGGGTCAGTTCACAtt                                >  1:15772665/1‑34 (MQ=255)
  ataAACCGTCCAACATTATGGGGTCAGTTCACAtt                                <  1:7214457/35‑2 (MQ=255)
  ataAACCGTCCAACATTATGGGGTCAGTTCACAtt                                >  1:7702544/1‑34 (MQ=255)
   taAACCGTCCAGCATTATGGGGTCAGTTCACAttg                               >  1:20513975/1‑33 (MQ=38)
   taAACCGTCCAACATTATGGGGTCAGTTCACAttg                               >  1:3413619/1‑33 (MQ=255)
   taAACCGTCCAACATTATGGGGTCAGTTCACAttg                               <  1:266588/35‑3 (MQ=255)
   taAACCGTCCAACATTATGGGGTCAGTTCACAttg                               <  1:16494681/35‑3 (MQ=255)
   taAACCGTCCAACATTATGGGGTCAGTTCACAttg                               <  1:11983225/35‑3 (MQ=255)
   taAACCGTCCAACATTATGGGGTCAGTTCACAttg                               >  1:19162712/1‑33 (MQ=255)
    aaaCCTTCCAACATTATGGGGTCAGTTCACAttgt                              >  1:16443964/1‑32 (MQ=37)
    aaaCCGTCCAACATTATGGGGTTAGTTCACAttgt                              >  1:20021183/1‑32 (MQ=38)
    aaaCCGTCCAACATTATGGGGTCAGTTCACAttgt                              >  1:20069362/1‑32 (MQ=255)
    aaaCCGTCCAACATTATGGGGTCAGTTCACAttgt                              >  1:18662005/1‑32 (MQ=255)
    aaaCCGTCCAACATTATGGGGTCAGTTCACAttgt                              <  1:3305966/35‑4 (MQ=255)
    aaaCCGTCCAACATTATGGGGTCAGTTCACAttgt                              >  1:12846912/1‑32 (MQ=255)
    aaaCCGTCCAACATTATGGGGTCAGTTCACAttgt                              <  1:10849101/35‑4 (MQ=255)
       ccGTCCAACATTATGGGGTCAGTTCACATTGTcgg                            <  1:14226400/35‑1 (MQ=25)
       ccGTCCAACATTATGGGGTCAGTTCACATTGTcgg                            <  1:4858043/35‑1 (MQ=25)
       ccGTCCAACATTATGGGGTCAGTTCACATTGTcgg                            <  1:20235872/35‑1 (MQ=25)
       ccGTCCAACATTATGGGGTCAGTTCACATTGTcgg                            <  1:5144/35‑1 (MQ=25)
       ccGTCCAACATTATGGGGTCAGTTCACATTGTcgg                            <  1:7189387/35‑1 (MQ=25)
        cGTCCAACATTATTGGGTCAGTTCACATTGTcggc                           >  1:10327375/1‑35 (MQ=25)
        cGTCCAACATTATGGGGTCAGTTCACATTGTcggc                           <  1:4251256/35‑1 (MQ=25)
        cGTCCAACATTATGGGGTCAGTTCACATTGTcggc                           <  1:9917999/35‑1 (MQ=25)
        cGTCCAACATTATGGGGTCAGTTCACATTGTcggc                           <  1:13877662/35‑1 (MQ=25)
        cGTCCAACATTATGGGCTCAGTTCACATTGTcggc                           >  1:7934190/1‑35 (MQ=21)
         gTCCAACATTATGGGGTCAGTTCACATTGTcggcg                          <  1:15841693/35‑1 (MQ=25)
          tCCAACATTATGGGGTCAGTTCACATTGTcggcgg                         >  1:1810856/1‑35 (MQ=25)
          tCCAACATTATGGGGTCAGTTCACATTGTcggcgg                         >  1:16440414/1‑35 (MQ=25)
          tCCAACATTATGGGGTCAGTTCACATTGTcggcgg                         >  1:17271616/1‑35 (MQ=25)
          tCCAACATTATGGGGTCAGCTCACATTGTcggcgg                         >  1:5664659/1‑35 (MQ=25)
           ccAACATTATGGGGTCAGTTCACATTGTCggcggc                        <  1:19145543/35‑1 (MQ=25)
           ccAACATTATGGGGTCAGTTCACATTGTCggcggc                        <  1:1927236/35‑1 (MQ=25)
           ccAACATTATGGGGTCAGTTCACATTGTCggcggc                        <  1:1497376/35‑1 (MQ=25)
            cAACATTATGGGGTCAGTTCACATTGTcggcgggt                       >  1:6179556/1‑33 (MQ=25)
            cAACATTATGGGGTCAGTTCACATTGTcggcgggc                       >  1:1266413/1‑33 (MQ=25)
            cAACATTATGGGGTCAGTTCACATTGTCGGCGGCt                      <  1:5580305/35‑1 (MQ=25)
             aaCATTATGGGGTCAGTTCACATTGTcggcggggt                      >  1:9052206/1‑32 (MQ=21)
             aaCATTATGGGGTCAGTTCACATTGTcggcggggt                      >  1:14368125/1‑32 (MQ=21)
             aaCATTATGGGGTCAGTTCACATTGTCGGCGGGtt                     >  1:17847890/1‑35 (MQ=21)
             aaCATTATGGGGTCAGTTCACATTGTCGGCGGGtt                     >  1:3826801/1‑35 (MQ=21)
             aaCATTATGGGGTCAGTTCACATTGTCGGCGGCtt                     <  1:8280049/35‑1 (MQ=25)
             aaCATTATGGGGTCAGTTCACATTGTCGGCGGCtt                     <  1:4376396/35‑1 (MQ=25)
              aCATTATGGGGTCAGTTCACATTGTCGGCGGGttt                    >  1:9493833/1‑35 (MQ=21)
              aCATTATGGGGTCAGTTCACATTGTCGGCGGGttt                    >  1:9669977/1‑35 (MQ=21)
              aCATTATGGGGTCAGTTCACATTGTCGGCGGGttt                    >  1:10041497/1‑35 (MQ=21)
              aCATTATGGGGTCAGTTCACATTGTCGGCGGCttt                    <  1:15553317/35‑1 (MQ=25)
              aCATTATGGGGTCAGTTCACATTGTCGGCGGCttt                    <  1:17937637/35‑1 (MQ=25)
              aCATTATGGGGTCAGTTCACATTGTCGGCGGCttt                    <  1:8198716/35‑1 (MQ=25)
              aCATTATGGGGTCAGTTCACATTGTCGGCGGCttt                    <  1:3135182/35‑1 (MQ=25)
                aTTATGGGGTCAGTTCACATTGTCGGCGGCTTTCt                  <  1:9554168/35‑1 (MQ=25)
                aTTATGGGGTCAGTTCACATTGTCGGCGGCTTTCt                  <  1:17945618/35‑1 (MQ=25)
                aTTATGGGGTCAGTTCACATTGTCGGCGGCTTTCt                  <  1:4544/35‑1 (MQ=25)
                 ttATGGGGTCAGTTCACATTGTCGGCGGNnnttnn                 >  1:12389096/1‑32 (MQ=16)
                 ttATGGGGTCAGTTCACATTGTCGGCGGGtttttt                 >  1:1789381/1‑32 (MQ=12)
                 ttATGGGGTCAGTTCACATTGTCGGCGGGtttttt                 >  1:2471731/1‑32 (MQ=12)
                 ttATGGGGTCAGTTCACATTGTCGGCGGCTTTCTg                 <  1:6591807/35‑1 (MQ=25)
                 ttATGGGGTCAGTTCACATTGTCGGCGGCTTTCTg                 <  1:20453096/35‑1 (MQ=25)
                  tATGGGGTCAGTTCACATTGTCGGCGGCTTTCttc                >  1:18593249/1‑33 (MQ=25)
                  tATGGGGTCAGTTCACATTGTCGGCGGCTTTCTGa                <  1:1577292/35‑1 (MQ=25)
                   aTGGGGTCAGTTCACATTGTCGGGGGCTTTCTGAc               <  1:15088932/35‑1 (MQ=21)
                   aTGGGGTCAGTTCACATTGTCGGCGGCGTTTCTgt                >  1:18852736/1‑34 (MQ=12)
                   aTGGGGTCAGTTCACATTGTCGGCGGCTTTCTGAc               <  1:20347012/35‑1 (MQ=25)
                    tGGGGTCAGTTCACATTGTCGGCGGCTTTCTGACt              <  1:16512395/35‑1 (MQ=25)
                    tGGGGTCAGTTCACATTGTCGGCGGCTTTCTGACt              <  1:10105452/35‑1 (MQ=25)
                    tGGGGTCAGTTCACATTGTCGGCGGCTTTCTGACt              <  1:7214827/35‑1 (MQ=25)
                        gTCAGTTCACATTGTCGGCGGCTTTCTGACTTACa          <  1:9199506/35‑1 (MQ=25)
                        gTCAGTTCACATTGTCGGCGGCTTTCTGACTTACa          <  1:11257903/35‑1 (MQ=25)
                        gTCAGTTCACATTGTCGGCGGCTTTCTGACTTACa          <  1:18588528/35‑1 (MQ=25)
                        gTCAGTTCACATTGTCGGCGGCTTTCTGACTTACa          <  1:4490974/35‑1 (MQ=25)
                         tCAGTTCACATTGTCGGCGGCTTTCTGACTTACaa         <  1:6780681/35‑1 (MQ=25)
                          cAGTTCACATTGTCGGCGGCTTTCTGACTTACaaa        <  1:672863/35‑1 (MQ=25)
                          cAGTTCACATTGTCGGCGGCTTTCTGACTTACaaa        <  1:10747815/35‑1 (MQ=25)
                          cAGTTCACATTGTCGGCGGCTTTCTGACTTACaaa        <  1:1767943/35‑1 (MQ=25)
                          cAGTTCACATTGTCGGCGGCTTTCTGACTTACaaa        <  1:12460287/35‑1 (MQ=25)
                           aGTTCACATTGTCGGCGGGTTTTTTTCTTACaaaa       >  1:941611/1‑34 (MQ=2)
                           aGTTCACATTGTCGGCGGCTTTCTGACTTACAAAc       <  1:2688250/35‑1 (MQ=25)
                           aGTTCACATTGTCGGCGGCTTTCTGACTTACAAAc       <  1:3243733/35‑1 (MQ=25)
                            gTTCACATTGTCGGCGGCTTTCTGACTTACAAACt      <  1:15600706/35‑1 (MQ=25)
                            gTTCACATTGTCGGCGGCTTTCTGACTTACAAACt      <  1:18475079/35‑1 (MQ=25)
                            gTTCACATTGTCGGCGGCTTTCTGACTTACAAACt      <  1:11516564/35‑1 (MQ=25)
                             ttCACATTGTCGGCGGCTTTCTGACTTACAAACTa     <  1:4104626/35‑1 (MQ=25)
                             ttCACATTGTCGGCGGCTTTCTGACTTACAAACTa     <  1:13288691/35‑1 (MQ=25)
                              tCACATTGTCGGCGGCTTTCTGACTTACAAACTaa    <  1:11929069/35‑1 (MQ=25)
                               cacaTGTCGGCGGCTTTCTGACTTACAAACTAACa  <  1:8012939/35‑1 (MQ=255)
                                   |                                
ATATAAACCGTCCAACATTATGGGGTCAGTTCACATGTCGGCGGCTTTCTGACTTACAAACTAACA  >  REL606/2333504‑2333569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.