New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 445976 = | 79 (0.770) | 9 (0.120) | 4/36 | NT | 13.8% | coding (944/1287 nt) | amtB | ammonium transporter |
? | REL606 | 3083447 = | 53 (0.690) | coding (197/495 nt) | yqhA | hypothetical protein |
AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/446015‑445976 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccaACCAGCGTCATATCCACCAGCGACAGCAACACGA > REL606/3083447‑3083480 tGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC < 1:16809075/34‑1 AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC > 1:12285131/1‑35 AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC > 1:11793179/1‑35 AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC > 1:1437922/1‑35 AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC > 1:11459237/1‑35 AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC > 1:6086630/1‑35 AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACC > 1:942259/1‑35 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC > 1:6503079/1‑35 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC > 1:1519634/1‑35 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC < 1:7187957/35‑1 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC < 1:11609114/35‑1 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC > 1:11729304/1‑35 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC < 1:11733545/35‑1 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC > 1:2115753/1‑35 GCAAGCGTTTGAGCATAGTAACGCCCCACAAACCC > 1:3559149/1‑35 CAAGCGTTTGAGCATAGTAACGCCCCACAAACCCG > 1:15254533/1‑35 CAAGCGTTTGAGCATAGTAACGCCCCACAAACCCG > 1:16997011/1‑35 CAAGCGTTTGAGCATAGTAACGCCCCACAAACCCG > 1:5283853/1‑35 CAAGCGTTTGAGCATAGTAACGCCCCACAAACCCG > 1:11778983/1‑35 CAAGCGTTTGAGCATAGTAACGCCCCACAAACCCG > 1:6719432/1‑35 CAAGCGTTTGAGCATAGTAACGCCCCACAAACCCG < 1:10215712/35‑1 AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC < 1:5164283/35‑1 AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC > 1:20549086/1‑35 AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC > 1:20508059/1‑35 AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC < 1:5341295/35‑1 AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC > 1:19122402/1‑35 AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC < 1:8770471/35‑1 AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC > 1:18555537/1‑35 AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC > 1:9430698/1‑35 AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC > 1:16962256/1‑35 AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC > 1:15781592/1‑35 AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC < 1:11197704/35‑1 AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC < 1:12319358/35‑1 AAGCGTTTGAGCATAGTAACGCCCCACAAACCCGC > 1:12625709/1‑35 AGCGTTTGAGCATAGTAACGCCCCACAACCCCGCC < 1:19822939/35‑1 AGCGTTTGAGCATAGTAACGCCCCACAAACCCGCC > 1:8867758/1‑35 AGCGTTTGAGCATAGTAACGCCCCACAAACCCGCC > 1:6765559/1‑35 AGCGTTTGAGCATAGTAACGCCCCACAAACCCGCC > 1:11031886/1‑35 AGCGTTTGAGCATAGTAACGCCCCACAAACCCGCC > 1:5884747/1‑35 GCGTTTGAGCATAGTAACGCCCCACAAACCCGCCA < 1:11079638/35‑1 GCGTTTGAGCATAGTAACGCCCCACAAACCCGCCA > 1:9209402/1‑35 GCGTTTGAGCATAGTAACGCCCCACAAACCCGCCA > 1:8684713/1‑35 CCCCAAAAACCCGCCAACCAGCGTCATATCCACCA < 1:10918007/35‑1 CCCAGAAACCCGCCAACCAGCGTCATATCCACCAG < 1:7040580/35‑1 CCCACAAACCCGCCAACCAGCGTCATATCCACCAG < 1:19888549/35‑1 CCCAAAAACCCGCCAACCAGCGTCATATCCACCAG < 1:416030/35‑1 CCAGAAACCCGCCAACCAGCGTCATATCCACCAGC < 1:7898509/35‑1 CCACAACCCCGCCAACCAGCGTCATATCCACCAGC < 1:20115861/35‑1 CCACAAACCCGCCAACCAGCGTCATATACACCAGC < 1:5969181/35‑1 CACAACCCCGCCAACCAGCGTCATATCCACCAGCG < 1:6501957/35‑1 CACAAACCCGCCAACCAGCGTCATATCCACCAGCG < 1:14194175/35‑1 aacAACCCGCCAACCAGCGTCATATCCACCAGCGA < 1:8554614/32‑1 aacCCCGCCAACCAGCGTCATATCCACCAGCGACA < 1:6804034/32‑1 aacCCCGCCAACCAGCGTCATATCCACCAGCGACA < 1:8651321/32‑1 acCCCGCCAACCAGCGTCATATCCACCAGCGACAG < 1:11470647/33‑1 AACCCGCCACCCAGCGTCATATCCACCAGCGACAG < 1:15626212/35‑1 CCCGCCACCCAGCGTCATATCCACCAGCGACAGCA < 1:10939279/35‑1 CCCGCCAACCAGCGTCATATCCACCAGCGACAGCA < 1:6673678/35‑1 CCCCCCAACCAGCGTCATATCCACCAGCGACAGCA < 1:14611056/35‑1 CCGCCACCCAGCGTCATATCCACCAGCGACAGCAA < 1:3145092/35‑1 CCGCCAACCAGCGTCATATCCACCAGCGACAGCAA > 1:817903/1‑35 CCGCCAACCAGCGTCATATCCACCAGCGACAGCAA > 1:2195792/1‑35 CCGCCAACCAGCGTCATATCCACCAGCGACAGCAA > 1:18144691/1‑35 CCGCCAACCAGCGTCATATCCACCAGCGACAGCAA < 1:17854978/35‑1 CCGCCAACCAGCGTCATATCCACCAGCGACAGCAA < 1:1689436/35‑1 nGCCAACCAGCGTCATATCCACCAGCGACAGCAAC > 1:10692519/2‑35 CGCCAACCAGCGTCATATCCACCAGCGACAGCAAC > 1:13491376/1‑35 CGCCAACCAGCGTCATATCCACCAGCGACAGCAAC > 1:15300799/1‑35 CGCCAACCAGCGTCATATCCACCAGCGACAGCAAC > 1:1567142/1‑35 GCCAACCAGCGTCATATCCACCAGCGACAGCAACA > 1:13710709/1‑35 CCACCCAGCGTCATATCCACCAGCGACAGCAACAC < 1:12750830/35‑1 CCAACCAGCGTCATATCCACCAGCGACAGCAACAC < 1:10286828/35‑1 CCAACCAGCGTCATATCCACCAGCGACAGCAACAC > 1:6908354/1‑35 CCAACCAGCGTCATATCCACCAGCGACAGCAACAC > 1:5867750/1‑35 CCAACCAGCGTCATATCCACCAGCGACAGCAACAC < 1:5411364/35‑1 CCAACCAGCGTCATATCCACCAGCGACAGCAACAC > 1:19888142/1‑35 CCAACCAGCGTCATATCCACCAGCGACAGCAACAC > 1:18930722/1‑35 CCAACCAGCGTCATATCCACCAGCGACAGCAACAC > 1:17563606/1‑35 CCAACCAGCGTCATATCCACCAGCGACAGCAACAC < 1:1564620/35‑1 CAACCAGCGTCATATCCACCAGCGACAGCAACACG < 1:580456/35‑1 AACCAGCGTCATATCCACCAGCGACAGCAACACGA > 1:15460935/1‑35 AACCAGCGTCATATCCACCAGCGACAGCAACACGA > 1:15744411/1‑35 AGCAAGCGTTTGAGCATAGTAACGCCCCACAAACCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/446015‑445976 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccaACCAGCGTCATATCCACCAGCGACAGCAACACGA > REL606/3083447‑3083480 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |