New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 168661182 (0.800)12 (0.120) 3/48 NT 15.0% coding (276/1059 nt) rnfD electron transport complex protein RnfD
?REL606 = 4059472 54 (0.530)coding (536/636 nt) fdoI formate dehydrogenase‑O, cytochrome b556 subunit

Only 100 of 116 total aligned reads displayed.

CCAGGCGCTGGTAACCCATCCTTCCACCATGGCGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTAGATA  >  REL606/4059438‑4059507
                                  |                                   
ccAGGCGCTGGTAACCCATCCTTCCACCATGGCgg                                     <  1:4715842/35‑1 (MQ=255)
ccAGGCGCTGGTAACCCATCCTTCCACAATGGCgg                                     <  1:9136558/35‑1 (MQ=255)
 cAGGCGCTGGTAACCCATCCTTCCACCATGGCGGt                                    <  1:12914069/35‑1 (MQ=255)
 cAGGCGCTGGTAACCCATCCTTCCACCATGGCGGt                                    <  1:11400730/35‑1 (MQ=255)
 cAGGCGCTGGTAACCCATCCTTCCACCATGGCGGg                                    <  1:5382235‑M2/35‑2 (MQ=255)
 cAGGCGCTGGTAACCCATCCTTCCACCATGGCGGg                                    <  1:12438664‑M2/35‑2 (MQ=255)
  aGGCGCTGGTAACCCATCCTTCCACCATGGCGGgg                                   <  1:4587988‑M2/35‑3 (MQ=255)
  aGGCGCTGGTAACCCATCCTTCCACCATGGCGGTa                                   <  1:3058798/35‑1 (MQ=255)
   ggCGCTGGTAACCCATCCTTCCACCATGGCGGgtg                                  <  1:18879660‑M2/35‑4 (MQ=255)
   ggCGCTGGTAACCCATCCTTCCACCATGGCGGgag                                  <  1:4174932‑M2/35‑4 (MQ=255)
   ggCGCTGGTAACCCATCCTTCCACCATGGCGGTaa                                  <  1:8295038/35‑1 (MQ=255)
   ggCGCTGGTAACCCATCCTTCCACCATGGCGGTaa                                  <  1:12568768/35‑1 (MQ=255)
   ggCCCTGGTAACCCATACTTCCACCATGGCGGTaa                                  <  1:18001653/35‑1 (MQ=38)
    gcgcTGGTAACCCATCCTTCCACCATGGCGGgggg                                 <  1:17377378‑M2/35‑5 (MQ=255)
    gcgcTGGTAACCCATCCTTCCACCATGGCGGggag                                 <  1:20496468‑M2/35‑5 (MQ=255)
     cgcTGGTAACCCATCCTTCCACCATGGCGGggggg                                <  1:11453688‑M2/35‑6 (MQ=255)
     cgcTGGTAACCCATCCTTCCACCATGGCGGggggg                                <  1:7236858‑M2/35‑6 (MQ=255)
     cgcTGGTAACCCATCCTTCCACCATGGCGGggggg                                <  1:15537221‑M2/35‑6 (MQ=255)
     cgcTGGTAACCCATCCTTCCACCATGGCGGTAATc                                <  1:1325243/35‑1 (MQ=255)
     cgcTGGTAACCCATCCTTCCACCATGGCGGTAATc                                <  1:9036715/35‑1 (MQ=255)
     cgcTGGTAACCCATCCTTCCACCATGGCGGTAATc                                <  1:10056037/35‑1 (MQ=255)
      gcTGGTAACCCATCCTTCCACCATGGCGGgggggg                               <  1:633570‑M2/35‑7 (MQ=255)
      gcTGGTAACCCATCCTTCCACCATGGCGGgggggg                               <  1:1263025‑M2/35‑7 (MQ=255)
      gcTGGTAACCCATCCTTCCACCATGGCGGTAATCg                               <  1:1517555/35‑1 (MQ=255)
       cTGGTAACCCATCCTTCCACCATGGCGGggggggg                              <  1:5441170‑M2/35‑8 (MQ=255)
       cTGGTAACCCATCCTTCCACCATGGCGGggggggg                              <  1:16028348‑M2/35‑8 (MQ=255)
       cTGGTAACCCATCCTTCCACCATGGCGGggggggg                              <  1:3206622‑M2/35‑8 (MQ=255)
       cTGGTAACCCATCCTTCCACCATGGCGGTAATCGt                              <  1:25933/35‑1 (MQ=255)
       cTGGTAACCCATCCTTCCACCATGGCGGTAATCGt                              <  1:4502921/35‑1 (MQ=255)
       cTGGTAACCCATCCTTCCACCATGGCGGTAATCGt                              <  1:14298780/35‑1 (MQ=255)
       cTGGTAACCCATCCTTCCACCATGGCGGTAATCGt                              <  1:7272721/35‑1 (MQ=255)
        tGGTAACCCATCCTTCCACCATGGCGGgggggggg                             <  1:3705047‑M2/35‑9 (MQ=255)
        tGGTAACCCATCCTTCCACCATGGCGGgggggggg                             <  1:8312670‑M2/35‑9 (MQ=255)
        tGGTAACCCATCCTTCCACCATGGCGGgggggggg                             <  1:2123004‑M2/35‑9 (MQ=255)
        tGGTAACCCATCCTTCCACCATGGCGGgggggggg                             <  1:12379775‑M2/35‑9 (MQ=255)
        tGGTAACCCATCCTTCCACCATGGCGGgaggggcg                             <  1:10110480‑M2/35‑9 (MQ=255)
        tGGTAACCCATCCTTCCACCATGGCGGTAATCGTg                             <  1:14849037/35‑1 (MQ=255)
         ggTAACCCATCCTTCCACCATGGCGGTAATCGTGc                            <  1:11134547/35‑1 (MQ=255)
         ggTAACCCATCCTTCCACCATCGCGGTAATCGTGc                            >  1:15998585/1‑35 (MQ=255)
            taCCCATCCTTCCACCATGGCGGTAATCGTGCCtt                         <  1:10376022/34‑1 (MQ=255)
            aaCCCATCCTTCCACCATGGCGGTAATCGTGCCtt                         <  1:2502383/35‑1 (MQ=255)
             aCCCATCCTTCCACCATGGCGGTAATCGTGCCttt                        <  1:8671901/35‑1 (MQ=255)
             aCCCATCCTTCCACCATGGCGGTAATAGTGCCttt                        <  1:9531133/35‑1 (MQ=255)
             aCCAATCCTTCCACCATGGCGGTAATCGTGCCttt                        <  1:12173413/35‑1 (MQ=255)
              cccATCCTTCCACCATGGCGGTAATCGTGCCTTTc                       <  1:2540663/35‑1 (MQ=255)
               ccATCCTTCCACCATGGCGGTAATCGTGCCTTTCa                      <  1:12631361/35‑1 (MQ=255)
               ccATCCTTCCACCATGGCGGTAATCGTGCCTTTCa                      <  1:2596593/35‑1 (MQ=255)
                cATCCTTCCACCATGGCGGTAATCGTGCCTTTCAc                     <  1:15162185/35‑1 (MQ=255)
                cATCCGTCCACCATGGCGGTAATCGTGCCTTTCAc                     <  1:1288866/35‑1 (MQ=255)
                 aTCCTTCCACCATGGCGGTAATCGTGCCTTTCAcc                    <  1:10258771/35‑1 (MQ=255)
                 aTCCTTCCACCATGGCGGTAATCGTGCATTTCAcc                    <  1:13536102/35‑1 (MQ=255)
                 aTCCTTCAACCATGGCGGTAATCGTGCCTTTCAcc                    <  1:14401699/35‑1 (MQ=255)
                  tCCTTCCACCATGGCGGTAATCGTGCCTTTCAccc                   <  1:5989702/35‑1 (MQ=255)
                  tCCTTCCACCATGGCGGTAATCGTGCCTTTCAccc                   <  1:5146876/35‑1 (MQ=255)
                   ccTTCCACCATGGCGGTAATCGTGCCTTTCACCCa                  <  1:3610025/35‑1 (MQ=255)
                   ccTTCCACCATCGCGGTAATCGTGCCTTTCACCCa                  >  1:7514530/1‑35 (MQ=255)
                    cTTCCACCATGGCGGTAATCGTGCCTTTCACCCaa                 <  1:5138664/35‑1 (MQ=255)
                    cTTCCACCATGGCGGTAATCGTGCCTTTCACCCaa                 <  1:14548468/35‑1 (MQ=255)
                    cTTCCACCATGGCGGTAATCGTGCCTTTCACCCaa                 <  1:3255797/35‑1 (MQ=255)
                     ttCCACCATGGCGGTAATCGTGCCTTTCACCCaaa                <  1:9198863/35‑1 (MQ=255)
                     ttCCACCATGGCGGTAATCGTGCCTTTCACCCaaa                <  1:7321599/35‑1 (MQ=255)
                     ttCCACCATGGCGGTAATCGTGCCTTTCACCCaaa                <  1:8136764/35‑1 (MQ=255)
                     ttCCACCATGGCGGTAATCGTGCCTTTCACCCaaa                <  1:14303392/35‑1 (MQ=255)
                      tCCACCATGGCGGTAATCGTGCCTTTCACCCAAAg               <  1:7738/35‑1 (MQ=255)
                      tCCACCATGGCGGTAATCGTGCCTTTCACCCAAAg               <  1:3816023/35‑1 (MQ=255)
                       ccaccaTGGCGGTAATCGTGCCTTTCACCCAAAgg              <  1:4617903/35‑1 (MQ=255)
                       ccaccaTGGCGGTAATCGTGCCTTTCACCCAAAgg              <  1:8943443/35‑1 (MQ=255)
                       ccaccaTGGCGGTAATCGTGCCTTTCACCCAAAgg              <  1:5379256/35‑1 (MQ=255)
                       ccaccaTGGCGGTAATCGTGCCTTTCACCCAAAgg              <  1:20438455/35‑1 (MQ=255)
                        caccaTGGCGGTAATCGTGCCTTTCACCCAAAggg             <  1:7957328/35‑1 (MQ=255)
                        caccaTGGCGGTAATCGTGCCTTTCACCCAAAggg             <  1:18810946/35‑1 (MQ=255)
                         accaTGGCGGTAATCGTGCCTTTCACCCAAAGggc            <  1:7509003/35‑1 (MQ=255)
                            aTGGCGGTAATCGTGCCTTTCACCCAAAGggcggc         <  1:2878746/35‑1 (MQ=255)
                            aTGGCGGTAATCGTGCCTTTCACCCAAAGggcggc         <  1:495157/35‑1 (MQ=255)
                            aTGGCGGTAATCGTGCCTTTCACCCAAAGggcggc         <  1:7532370/35‑1 (MQ=255)
                             tGGCGGTAATCGTGCCTTTCACCCAAAGGgcggcg        <  1:11966616/35‑1 (MQ=255)
                             tGGCGGTAATCGTGCCTTTCACCCAAAGGgcggcg        <  1:7270903/35‑1 (MQ=255)
                             tGGCGGTAATCGTGCCTTTCACCCAAAGGgcggcg        <  1:10199712/35‑1 (MQ=255)
                             tGGCGGTAATCGTGCCTTTCACCCAAAGGgcggcg        <  1:1798257/35‑1 (MQ=255)
                              ggCGGTAATCGTGCCTTTCACCCAAAGGGCGGCGt       <  1:12310542/35‑1 (MQ=255)
                              ggCGGTAATCGTGCCTTTCACCCAAAGGGCGGCGt       <  1:11062752/35‑1 (MQ=255)
                               gCGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTa      >  1:20532688/1‑35 (MQ=255)
                               gCGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTa      <  1:13008489/35‑1 (MQ=255)
                               gCGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTa      <  1:2294035/35‑1 (MQ=255)
                               gCGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTa      >  1:4695977/1‑35 (MQ=255)
                               gCGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTa      <  1:2389916/35‑1 (MQ=255)
                               gCGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTa      <  1:16282893/35‑1 (MQ=255)
                                cGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTAg     <  1:19173096/35‑1 (MQ=255)
                                cGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTAg     >  1:1727358/1‑35 (MQ=255)
                                cGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTAg     >  1:17149909/1‑35 (MQ=255)
                                cGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTAg     >  1:6197851/1‑35 (MQ=255)
                                cGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTAg     >  1:6981157/1‑35 (MQ=255)
                                cGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTAg     <  1:6922703/35‑1 (MQ=255)
                                 ggTAATCGTGCCTTTCACCCAAAGGGCGGCGTAGa    >  1:8819688/1‑35 (MQ=255)
                                 ggTAATCGTGCCTTTCACCCAAAGGGCGGCGTAGa    <  1:20108352/35‑1 (MQ=255)
                                 ggTAATCGTGCCTTTCACCCAAAGGGCGGCGTAGa    <  1:6654876/35‑1 (MQ=255)
                                  gTAATCGTGCCTTTCACCCAAAGGGCGGCGTAGat   >  1:4681958/1‑35 (MQ=255)
                                  gTAATCGTGCCTTTCACCCAAAGGGCGGCGTAGat   <  1:10688330/35‑1 (MQ=255)
                                  gTAATCGTGCCTTTCACCCAAAGGGCGGCGTAGat   <  1:10399741/35‑1 (MQ=255)
                                  gTAATCGTGCCTTTCACCAAAGGGCGGCGTAGata  <  1:13364689/35‑1 (MQ=25)
                                  |                                   
CCAGGCGCTGGTAACCCATCCTTCCACCATGGCGGTAATCGTGCCTTTCACCCAAAGGGCGGCGTAGATA  >  REL606/4059438‑4059507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.