New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2176060 =63 (0.610)6 (0.080) 3/36 NT 7.3% coding (49/933 nt) pbpG D‑alanyl‑D‑alanine endopeptidase
?REL606 3882315 = 105 (1.360)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

Only 100 of 114 total aligned reads displayed.

GCCGTTTTCGCAACGGCCTGCGGTGCAAAAGGCACAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACT  >  REL606/2176026‑2176094
                                  |                                  
gCCGTTTTCGCACCGGCCTGCGGTGCAAAAGGcac                                    <  1:12675098/35‑1 (MQ=255)
gCCGTTTTCGCAACGGCCTGCGGTGCAAAAGGcac                                    >  1:18809627/1‑35 (MQ=255)
gCCGTTTTCGCAACGGCCTGCGGTGCAAAAGGcac                                    >  1:2933409/1‑35 (MQ=255)
 ccGTTTTCGCACCGGCCTGCGGTGCAAAAGGcaca                                   <  1:8215223/35‑1 (MQ=255)
 ccGTTTTCGCACCGGCCTGCGGTGCAAAAGGcaca                                   <  1:1169930/35‑1 (MQ=255)
 ccGTTTTCGCAACGGCCTGCGGTGCAAAAGGcacg                                   <  1:1215587/35‑2 (MQ=255)
 ccGTTTTCGCAACGGCCTGCGGTGCAAAAGGcaca                                   >  1:7413905/1‑35 (MQ=255)
 ccGTTTTCGCAACGGCCTGCGGTGCAAAAGGcaca                                   <  1:2913049/35‑1 (MQ=255)
  cGTTTTCGCACCGGCCTGCGGTGCAAAAGGCAcag                                  <  1:13234644/35‑1 (MQ=255)
  cGTTTTCGCAACGGCCTGCGGTGCAAAAGGCAcag                                  >  1:9136623/1‑35 (MQ=255)
   gTTTTCGCAACGGCCTGCGGTGCAAAAGGCAcagc                                 >  1:1031429/1‑35 (MQ=255)
   gTTTTCGCAACGGCCTGCGGTGCAAAAGGCAcagc                                 >  1:5969127/1‑35 (MQ=255)
    ttttCGCAACGGCCTGCGGTGCAAAAGGCAcagcc                                >  1:17409944/1‑35 (MQ=255)
     tttCGCAACGGCCTGCGGTGCAAAATGCAcagcca                               >  1:15034626/1‑35 (MQ=255)
     tttCGCAACGGCCTGCGGTGCAAAAGGCAcagcca                               >  1:17116633/1‑35 (MQ=255)
     tttCGCAACGGCCTGCGGTGCAAAAGGCAcagcca                               >  1:2228735/1‑35 (MQ=255)
     tttCGCAACGGCCTGCGGTGCAAAAGGCAcagcca                               >  1:17624071/1‑35 (MQ=255)
      ttCGCAACTGCCTGCGGTGCAAAAGGCAcagccag                              >  1:3866901/1‑35 (MQ=255)
      ttCGCAACGGCCTGCTGTGCAAAAGGCAcagccag                              >  1:18851023/1‑35 (MQ=255)
      ttCGCAACGGCCTGCGGTGCAAAAGGCAcagccag                              >  1:18435627/1‑35 (MQ=255)
      ttCGCAACGGCCTGCGGTGCAAAAGGCAcagccag                              >  1:14654082/1‑35 (MQ=255)
      ttCGCAACGGCCTGCGGTGCAAAAGGCAcagccag                              >  1:5870428/1‑35 (MQ=255)
       tCGCAACGGCCTGCGGTGCAAAAGGCAcagccagc                             >  1:16457200/1‑35 (MQ=255)
        cGCAACGGCCTGCGGTGCAAAAGGCACAGCCAGCa                            >  1:5233547/1‑35 (MQ=255)
         gCAACTGCCTGCGGTGCAAAAGGCACAGCCAGCAt                           >  1:10007857/1‑35 (MQ=255)
          cAACGGCCTGCGGTGCAAAAGGCACAGCCAGCacc                          >  1:20584744/1‑33 (MQ=255)
          cAACGGCCTGCGGTGCAAAAGGCACAGCCAGCATc                          >  1:2781231/1‑35 (MQ=255)
          cAACGGCCTGCGGTGCAAAAGGCACAGCCAGCATc                          >  1:16904723/1‑35 (MQ=255)
          cAACGGCCTGCGGCGCAAAAGGCACAGCCAGCATc                          >  1:703766/1‑35 (MQ=255)
            ccGGCCGGCGGTGCAAAAGGCACAGCTAGCATCAg                        <  1:8956635/34‑1 (MQ=37)
            aCGGCCTGCGGTGCAAAAGGCACAGCCAGCATCAg                        >  1:14834747/1‑35 (MQ=255)
             cGGCCTGCGGTGCAAAAGGCACAGCCAGCATCAgg                       >  1:222885/1‑35 (MQ=255)
             cGGCCTGCGGTGCAAAAGGCACAGCCAGCATCAgg                       >  1:804673/1‑35 (MQ=255)
             cGGCCTGCGGTGCAAAAGGCACAGCCAGCATCAgg                       >  1:584263/1‑35 (MQ=255)
              ggCCTGCGGTGCAAAAGGCACAGCCAGCATCAggg                      >  1:1702235/1‑35 (MQ=255)
              ggCCTGCGGTGCAAAAGGCACAGCCAGCATCAggg                      >  1:10059349/1‑35 (MQ=255)
               gCCTGCGGTGCAAAAGGCACAGCCAGCATCAggtc                     >  1:8181979/1‑33 (MQ=255)
               gCCTGCGGTGCAAAAGGCACAGCCAGCATCAGGGc                     >  1:4933692/1‑35 (MQ=255)
               gCCTGCGGTGCAAAAGGCACAGCCAGCATCAGGGc                     >  1:13997447/1‑35 (MQ=255)
                ccTGCGGTGCAAAAGGCACAGCCAGCATCAGGGcc                    >  1:6270148/1‑35 (MQ=255)
                ccTGCGGTGCAAAAGGCACAGCCAGCATCAGGGcc                    >  1:5750858/1‑35 (MQ=255)
                ccTGCGGTGCAAAAGGCACAGCCAGCATCAGGGcc                    >  1:2562951/1‑35 (MQ=255)
                 cTGCGGTGCAAAAGGCACAGCCAGCATCAGGTCCa                   >  1:3023533/1‑35 (MQ=255)
                 cTGCGGTGCAAAAGGCACAGCCAGCATCAGGGCCa                   >  1:16721832/1‑35 (MQ=255)
                  tGCGGTGCAAAAGGCACAGCCAGCATCAGGGCCAg                  >  1:9635721/1‑35 (MQ=255)
                  tGCGGTGCAAAAGGCACAGCCAGCATCAGGGCCAg                  >  1:18147107/1‑35 (MQ=255)
                    cGGTGCAAAAGGCACAGCCAGCATCAGGGCCAGGc                >  1:684586/1‑35 (MQ=255)
                     ggTGCAAAAGGCACAGCAAGCATCAGGGCCAGGCt               <  1:19472642/35‑1 (MQ=255)
                      gTGCAAAAGGCACAGCCAGCATCAGGGCCAGGCta              >  1:703545/1‑35 (MQ=255)
                      gTGCAAAAGGCACAGCCAGCATCAGGGCCAGGCta              >  1:149438/1‑35 (MQ=255)
                      gTGCAAAAGGCACAGCCAGCATCAGGGCCAGGCta              >  1:12057350/1‑35 (MQ=255)
                       tGCAAAAGGCACAGCCAGCATCATGGCCAGGCtaa             >  1:19143338/1‑35 (MQ=255)
                       tGCAAAAGGCACAGCCAGCATCAGGGCCAGGCtaa             >  1:7146162/1‑35 (MQ=255)
                        gCAAAAGGCACAGCCAGCATCAGGGCCAGGCtaaa            >  1:15681700/1‑35 (MQ=255)
                        gCAAAAGGCACAGCCAGCATCAGGGCCAGGCtaaa            >  1:1881099/1‑35 (MQ=255)
                        gCAAAAGGCACAGCAAGCATCAGGGCCAGGCtaaa            <  1:14503439/35‑1 (MQ=255)
                         caaacgcccCAGCCAGCATCAGGGCCAGGCtaaat           >  1:6262844‑M1/10‑35 (MQ=255)
                         cAAAAGGCACAGCCAGCATCAGGGCCAGGCtaaat           >  1:9194371/1‑35 (MQ=255)
                         cAAAAGGCACAGCCAGCATCAGGGCCAGGCtaaat           >  1:10596240/1‑35 (MQ=255)
                         aacacccccCAGCCAGCATCAGGGCCAGGCtaaat           >  1:5047186‑M1/10‑35 (MQ=255)
                         aaaacccccCAGCCAGCATCAGGGCCAGGCtaaat           >  1:10409437‑M1/10‑35 (MQ=255)
                          ccccccccCAGCCAGCATCAGGGCCAGGCtaaata          >  1:1002430‑M1/9‑35 (MQ=255)
                          ccccccccCAGCCAGCATCAGGGCCAGGCtaaata          >  1:7651163‑M1/9‑35 (MQ=255)
                          acccccccCAGCCAGCATCAGGGCCAGGCtaaata          >  1:2238730‑M1/9‑35 (MQ=255)
                          aaccccccCAGCCAGCATCAGGGCCAGGCtaaata          >  1:1127276‑M1/9‑35 (MQ=255)
                          aaacccccCAGCCAGCATCAGGGCCAGGCtaaata          >  1:1027871‑M1/9‑35 (MQ=255)
                          aaaaGGCACAGCCAGCATCAGGGCCAGGCtaaata          >  1:4422852/1‑35 (MQ=255)
                          aaaaGGCACAGCCAGCATCAGGGCCAGGCtaaata          >  1:4685272/1‑35 (MQ=255)
                          aaaaGGCACAGCCAGCATCAGGGCCAGGCtaaaag          >  1:16121469/1‑33 (MQ=255)
                          aaaaGGCACAGCCAGCATCAGGGCCAGGCtaaaag          >  1:9436863/1‑33 (MQ=255)
                           cccccccCAGCCAGCATCAGGGCCAGGCtaaataa         >  1:10562893‑M1/8‑35 (MQ=255)
                           cccccccCAGCCAGCATCAGGGCCAGGCtaaataa         >  1:6914071‑M1/8‑35 (MQ=255)
                           cccccccCAGCCAGCATCAGGGCCAGGCtaaataa         >  1:4032022‑M1/8‑35 (MQ=255)
                           cccccccCAGCCAGCATCAGGGCCAGGCtaaataa         >  1:11191453‑M1/8‑35 (MQ=255)
                           cccccccCAGCCAGCATCAGGGCCAGGCtaaataa         >  1:2391018‑M1/8‑35 (MQ=255)
                           aacccccCAGCCAGCATCAGGGCCAGGCtaaataa         >  1:9544601‑M1/8‑35 (MQ=255)
                           aaaGGCACAGCCAGCATCAGGGCCAGGCtaaataa         >  1:11140616/1‑35 (MQ=255)
                           aaaGGCACAGCCAGCATCAGGGCCAGGCtaaataa         >  1:3136695/1‑35 (MQ=255)
                           aaaGGCACAGCCAGCATCAGGGCCAGGCtaaataa         >  1:11299561/1‑35 (MQ=255)
                            ccccccCAGCCAGCATCAGGGCCAGGCtaaataaa        >  1:783790‑M1/7‑35 (MQ=255)
                            ccccccCAGCCAGCATCAGGGCCAGGCtaaataaa        >  1:8719839‑M1/7‑35 (MQ=255)
                            ccccccCAGCCAGCATCAGGGCCAGGCtaaataaa        >  1:15309591‑M1/7‑35 (MQ=255)
                            ccccccCAGCCAGCATCAGGGCCAGGCtaaataaa        >  1:5785664‑M1/7‑35 (MQ=255)
                            ccccccCAGCCAGCATCAGGGCCAGGCtaaataaa        >  1:18436694‑M1/7‑35 (MQ=255)
                            aaGGCACATCCAGCATCAGGGCCAGGCtaaataga        >  1:19699292/1‑33 (MQ=37)
                             aGGCACAGCCAGCATCAGGGCCAGGCTAAATAAAg       >  1:16065769/1‑35 (MQ=255)
                              ggCACAGCCAGCATCAGGGCCAGGCTAAATAAAGa      >  1:19328895/1‑35 (MQ=255)
                              ggCACAGCCAGCATCAGGGCCAGGCTAAATAAAGa      >  1:562110/1‑35 (MQ=255)
                               gCACAGCCAGCATCAGGGCCAGGCTAAATAAAGaa     >  1:7088977/1‑35 (MQ=255)
                               gCACAGCCAGCATCAGGGCCAGGCTAAATAAAGaa     >  1:17381027/1‑35 (MQ=255)
                               gCACAGCCAGCATCAGGGCCAGGCTAAATAAAGaa     >  1:3170053/1‑35 (MQ=255)
                                cacaGCCAGCATCAGGGCCAGGCTAAATAAAGaaa    >  1:19995830/1‑35 (MQ=255)
                                 cCAGCCAGCATCAGGGCCAGGCTAAATAAAGAAAc   >  1:15758682‑M1/2‑35 (MQ=255)
                                  CAGCCAGCATCAGGGCCAGGCTAAATAAAGAAacn  <  1:9635932‑M1/35‑2 (MQ=255)
                                  CAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACt  >  1:3695799‑M1/1‑35 (MQ=255)
                                  CAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACt  >  1:20149705‑M1/1‑35 (MQ=255)
                                  CAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACt  <  1:1363674‑M1/35‑1 (MQ=255)
                                  CAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACt  >  1:18663671‑M1/1‑35 (MQ=255)
                                  CAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACt  >  1:9588893‑M1/1‑35 (MQ=255)
                                  CAGACAGCATCAGGGCCAGGCTAAATAAAGAAACt  >  1:4756469‑M1/1‑35 (MQ=255)
                                  |                                  
GCCGTTTTCGCAACGGCCTGCGGTGCAAAAGGCACAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACT  >  REL606/2176026‑2176094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.