New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 408655471 (0.690)6 (0.070) 5/42 NT 6.5% coding (604/903 nt) fieF ferrous iron efflux protein F
?REL606 4620932 = 111 (1.230)intergenic (+49/‑41) slt/trpR lytic murein transglycosylase, soluble/Trp operon repressor

ATTTTATATAGCGCGTTACGCATGGGATATGAGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/4086518‑4086554
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCG  >  REL606/4620932‑4620965
                                                                       
ATTTTATATAGCGCGTTACGCATGGGATATGAGGC                                      <  1:8331239/35‑1
ATTTTATATAGCGCGTTACGCATGGGATATGAGGC                                      >  1:577494/1‑35
ATTTTATATAGCGCGTTACGCATGGGATATGAGGC                                      <  1:20019647/35‑1
ATTTTATATAGCGCGTTACGCATGGGATATGAGGC                                      <  1:14802564/35‑1
ATTTTATATAGCGCGTTACGCATGGGATATGAGGC                                      >  1:14369409/1‑35
ATTTTATATAGCGCGTTACGCATGGGATATGAGGC                                      <  1:1170496/35‑1
ATTTTATATAGCGCGTTACGCATGGGATATGAGGC                                      <  1:10378212/35‑1
ATTTTATATAGCGCGTTACGCATGGGATATGAGGC                                      <  1:10820623/35‑1
 TTTTATATAGCGCGTTACGCATGGGATATGAGGCG                                     <  1:6083497/35‑1
 TTTTATATAGCGCGTTACGCATGGGATATGAGGCG                                     >  1:10675530/1‑35
 TTTTATATAGCGCGTTACGCATGGGATATGAGGCG                                     <  1:18272733/35‑1
 TTTTATATAGCGCGTTACGCATGGGATATGAGGCG                                     <  1:16558414/35‑1
  TTTATATAGCGCGTTACGCATGGGATATGAGGCag                                    >  1:13276973/1‑33
  TTTATATAGCGCGTTACGCATGGGATATGAGGCGG                                    <  1:14337284/35‑1
   TTATATAGCGCGTTACGTATGGGATATGAGGCGGG                                   >  1:7499399/1‑35
   TTATATAGCGCGTTACGCATGGGATATGAGGCGGG                                   >  1:9367883/1‑35
   TTATATAGCGCGTTACGCATGGGATATGAGGCGGG                                   >  1:19329665/1‑35
   TTATATAGCGCGTTACGCATGGGATATGAGGCGGG                                   >  1:12350515/1‑35
    TATATAGCGCGTTACGCATGGGATATGAGGCGGGG                                  >  1:20116036/1‑35
    TATATAGCGCGTTACGCATGGGATATGAGGCGGGG                                  >  1:105024/1‑35
     ATATAGCGCGTTACGCATGGGATATGAGGCGGGGG                                 >  1:1462364/1‑35
      TATAGCGCGTTACGCATGGGATATGAGGCGGGAGA                                >  1:15818132/1‑35
       ATAGCGCGTTACGCATGGGATATGAGGCGGGGCAG                               >  1:6164598/1‑35
        TAGCGCGTTACGCATGGGATATGAGGCGGGGCAGG                              >  1:15156221/1‑35
         AGCGCGTTACGCATGGGATATGAGGCGGGGGAGag                             >  1:9956260/1‑33
         AGCGCGTTACGCATGGGATATGAGGCGGGGCAGGC                             >  1:7944328/1‑35
           CGCGTTACGCATGGGATATGAGGCGGGGGAGTCAT                           >  1:20281550/1‑35
            GCGTTACGCATGGGATATGAGGCGGGGGAGGCATT                          >  1:6300936/1‑35
             CGTTACGCATGGGATATGAGGCGGGGGGGGCATTT                         >  1:12039171/1‑35
             CGTTACGCATGGGATATGAGGCGGGGGAGGCATTT                         >  1:855444/1‑35
                                  CGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGG    >  1:19785655/1‑35
                                  CGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGG    >  1:7209155/1‑35
                                  CGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGG    >  1:3715892/1‑35
                                  CGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGG    >  1:2864276/1‑35
                                   GGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGC   >  1:20483539/1‑35
                                   GGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGC   >  1:4060109/1‑35
                                   GGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGC   >  1:15209233/1‑35
                                   GGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGC   >  1:13599689/1‑35
                                    GGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCG  >  1:6021022/1‑35
                                    GGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCG  >  1:5540599/1‑35
                                    GGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCG  >  1:10884537/1‑35
                                    GGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCG  <  1:9409968/35‑1
                                                                       
ATTTTATATAGCGCGTTACGCATGGGATATGAGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/4086518‑4086554
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCG  >  REL606/4620932‑4620965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.