New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1006225100 (0.970)9 (0.110) 3/38 NT 13.2% intergenic (‑149/+20) asnS/pncB asparaginyl‑tRNA synthetase/nicotinate phosphoribosyltransferase
?REL606 = 4210740 39 (0.480)intergenic (‑178/+75) yjbD/lysC hypothetical protein/aspartate kinase III

Only 100 of 125 total aligned reads displayed.

TATTCTCCGATAAAGACGCTGGTTAACAGAGTACAGGCTCGTTTATTGATGAGCATAGTGACAAGAAAA  >  REL606/4210706‑4210774
                                  |                                  
tattCTCCGATAAAGACGCTGGTTAACAGAGTACa                                    >  1:16056768/1‑35 (MQ=255)
tattCTCCGATAAAGACGCTGGTTAACAGAGTACa                                    >  1:16649549/1‑35 (MQ=255)
tattCTCCGATAAAGACGCTGGTTAACAGAGTACa                                    <  1:17272798/35‑1 (MQ=255)
tattCTCCGATAAAGACGCTGGTTAACAGAGTACa                                    >  1:15003244/1‑35 (MQ=255)
tattCTCCGATAAAGACGCTGGTTAACAGAGTACa                                    <  1:8928479/35‑1 (MQ=255)
tattCTCCGATAAAGACGCTGGTTAACAGAGTACa                                    >  1:7653033/1‑35 (MQ=255)
 aTTCTCCGATAAAGACGCTGGTTAACAGAGTACAg                                   <  1:1988898‑M2/35‑2 (MQ=255)
 aTTCTCCGATAAAGACGCTGGTTAACAGAGTACAg                                   >  1:297255‑M2/1‑34 (MQ=255)
 aTTCTCCGATAAAGACGCTGGTTAACAGAGTACAg                                   <  1:4870847‑M2/35‑2 (MQ=255)
 aTTCTCCGATAAAGACGCTGGTTAACAGAGTACAg                                   >  1:12677261‑M2/1‑34 (MQ=255)
 aTTCTCCGATAAAGACGCTGGTTAACAGAGTACAg                                   <  1:6600453‑M2/35‑2 (MQ=255)
 aTTCTCCGATAAAGACGCTGGTTAACAGAGTACAg                                   <  1:6807745‑M2/35‑2 (MQ=255)
 aTTCTCCGATAAAGACGCTGGTTAACAGAGTACAg                                   <  1:11310259‑M2/35‑2 (MQ=255)
 aTTCTCCGATAAAGACGCTGGTTAACAGAGTACAg                                   <  1:9037953‑M2/35‑2 (MQ=255)
 aTTCTCCGATAAAGACGCTGGTTAACAGAGTACAg                                   <  1:9535666‑M2/35‑2 (MQ=255)
  ttCTCCGATAAAGACGCTGGTTAACAGAGTACAgg                                  <  1:10273163‑M2/35‑3 (MQ=255)
   tctcCGATAAAGACGCTGGTTAACAGAGTACAggc                                 >  1:12960637‑M2/1‑32 (MQ=255)
   tctcCGATAAAGACGCTGGTTAACAGAGNNCNgnn                                 >  1:8538171/1‑33 (MQ=37)
    ctcCGATAAAGACGCTGGTTAACAGAGTACAggct                                >  1:4288182‑M2/1‑31 (MQ=255)
    ctcCGATAAAGACGCTGGTTAACAGAGTACAggct                                <  1:14378670‑M2/35‑5 (MQ=255)
    ctcCGATAAAGACGCTGGTTAACAGAGTACAggct                                <  1:19617444‑M2/35‑5 (MQ=255)
    ctcCGATAAAGACGCTGGTTAACAGAGTACAggct                                <  1:19346280‑M2/35‑5 (MQ=255)
     tcCGATAAAGACGCTGGTTAACAGAGTACAggctc                               >  1:6121388‑M2/1‑30 (MQ=255)
     tcCGATAAAGACGCTGGTTAACAGAGTACAggctc                               <  1:20105244‑M2/35‑6 (MQ=255)
     tcCGATAAAGACGCTGGTTAACAGAGTACAggctc                               <  1:20027064‑M2/35‑6 (MQ=255)
     tcCGATAAAGACGCTGGTTAACAGAGTACAggctc                               >  1:1339657‑M2/1‑30 (MQ=255)
      ccGATAAAGACGCTGGTTAACAGAGTACAGGCTCg                              <  1:7162564/35‑1 (MQ=255)
      ccGATAAAGACGCTGGTTAACAGAGTACAGGCTCg                              <  1:5666213/35‑1 (MQ=255)
       cGATAAAGGCGCTGGTTAACAGAGTACAGGCTCGt                             <  1:4346053/35‑1 (MQ=255)
       cGATAAAGACGCTGGTTAACAGAGTACAggctccc                             <  1:16451582‑M2/35‑8 (MQ=255)
       cGATAAAGACGCTGGTTAACAGAGTACAGGCTCGt                             <  1:20058553/35‑1 (MQ=255)
       cGATAAAGACGCTGGTTAACAGAGTACAGGCTCGt                             <  1:6711993/35‑1 (MQ=255)
       cGATAAAGACGCTGGTTAACAGAGTACAGGCTCGt                             <  1:18501291/35‑1 (MQ=255)
        gATAAAGACGCTGGTTAACAGAGTACAggctccgt                            <  1:16570588‑M2/35‑9 (MQ=255)
        gATAAAGACGCTGGTTAACAGAGTACAggctccct                            <  1:17729032‑M2/35‑9 (MQ=255)
        gATAAAGACGCTGGTTAACAGAGTACAggctccct                            <  1:3835310‑M2/35‑9 (MQ=255)
        gATAAAGACGCTGGTTAACAGAGTACAGGCTCGtt                            <  1:6362312/35‑1 (MQ=255)
        gATAAAGACGCTGGTTAACAGAGTACAGGCTCGtt                            <  1:2108056/35‑1 (MQ=255)
         ctAAAGACGCTGGTTAACAGAGTACAGGCTCGttt                           <  1:11837329/34‑1 (MQ=255)
         aTAAAGACGCTGGTTAACAGAGTACAggctccctt                           <  1:2476837‑M2/35‑10 (MQ=255)
         aTAAAGACGCTGGTTAACAGAGTACAggctccctt                           <  1:5909420‑M2/35‑10 (MQ=255)
         aTAAAGACGCTGGTTAACAGAGTACAGGCTCGttt                           <  1:5386985/35‑1 (MQ=255)
         aTAAAGACGCTGGTTAACAGAGTACAGGCTCGttt                           <  1:15420569/35‑1 (MQ=255)
          tAAAGACGCTTGTTAACAGAGTACAggctcccttt                          <  1:4691922‑M2/35‑11 (MQ=255)
          tAAAGACGCTGGTTAACAGAGTACAggctccgttt                          <  1:8215575‑M2/35‑11 (MQ=255)
          tAAAGACGCTGGTTAACAGAGTACAGGCTCGTTTa                          <  1:18889616/35‑1 (MQ=255)
          tAAAGACGCTGGTTAACAGAGTACAGGCTCGTTTa                          <  1:17915226/35‑1 (MQ=255)
           aaaGACGCTGGTTAACAGAGTACAGGCTCGTTTAt                         <  1:3117234/35‑1 (MQ=255)
           aaaGACGCTGGTTAACAGAGTACAGGCTCGTTTAt                         <  1:20359733/35‑1 (MQ=255)
            aaGACGCTGGTTAACAGAGTACAGGCTCGTTTAtt                        <  1:15779591/35‑1 (MQ=255)
            aaGACGCTGGTTAACAGAGTACAGACTCGTTTAtt                        <  1:3453066/35‑1 (MQ=255)
             aggcGCTGGTTAACAGAGTACAGGCTCGTTTATtg                       <  1:13455354/32‑1 (MQ=255)
             aGACGCTGGTTAACAGAGTACAGGCTCGTTTATtg                       <  1:5170304/35‑1 (MQ=255)
              gACGCTTGTTAACAGAGTACAggctcccttttttt                      <  1:18343254‑M2/35‑15 (MQ=255)
              gACGCTGGTTAACAGAGTACAggctccgttttttt                      <  1:20259961‑M2/35‑15 (MQ=255)
              gACGCTGGTTAACAGAGTACAggctcccttttttt                      <  1:8682196‑M2/35‑15 (MQ=255)
              gACGCTGGTTAACAGAGTACAggctccctttttta                      <  1:3441115‑M2/35‑15 (MQ=255)
              gACGCTGGTTAACAGAGTACAGGCTCGTTTATtga                      <  1:9336891/35‑1 (MQ=255)
              gACGCTGGTTAACAGAGTACAGGCTCGGTTTtttt                      >  1:12586546/1‑33 (MQ=25)
               aCGCTGGTTAACAGAGTACAggctcccttattttt                     <  1:6616218‑M2/35‑16 (MQ=255)
                cGCTGGTTAACAGAGTACAggctcccttttttatt                    <  1:9298909‑M2/35‑17 (MQ=255)
                cGCTGGTTAACAGAGTACAggctcccttttttatg                    <  1:19766722‑M2/35‑17 (MQ=255)
                cGCTGGTTAACAGAGTACAGGCTCGTTTTTttatg                    >  1:16087443/1‑35 (MQ=38)
                cGCTGGTTAACAGAGTACAGGCTCGTTTATtgatg                    <  1:5088336/35‑1 (MQ=255)
                  cTGGTTAACAGAGTACAGGCTCGTTTATTGATGAg                  <  1:20547922/35‑1 (MQ=255)
                  cTGGTTAACAGAGTACAGGCTCGCTTTTTTTTGAg                  >  1:7958516/1‑35 (MQ=16)
                  cTGGTTAACAGAGTACAGGCTCCCTTTTTTATGAg                  >  1:16795212/1‑35 (MQ=19)
                  cTGGTTAACAGAGTACAGGCTCCCTTATTTATGAg                  >  1:16567417/1‑35 (MQ=25)
                   tGGTTAACAGAGTACATGCTCGTTTATTGATGAGc                 <  1:11351508/35‑1 (MQ=255)
                   tGGTTAACAGAGTACAGGCTCGCTTATTGTTGAGc                 >  1:8872542/1‑35 (MQ=38)
                    ggTTAACAGAGTACAGGCTCGTTTATTGATGAGCa                <  1:10524451/35‑1 (MQ=255)
                    ggTTAACAGAGTACAGGCTCGTTTATTGATGAGCa                <  1:13654089/35‑1 (MQ=255)
                     gTTAACAGAGTACAGGCTCGTTTATTGATGAGCAt               <  1:1140340/35‑1 (MQ=255)
                     gTTAACAGAGTACAGGCTCGTTTATTGATGAGCAt               <  1:912825/35‑1 (MQ=255)
                     gTTAACAGAGTACAGGCTCGTTTATTGATGAGCAt               <  1:20281215/35‑1 (MQ=255)
                     gTTAACAGAGTACAGGCTCGTTTATTGATGAGCAt               <  1:7844966/35‑1 (MQ=255)
                        aaCAGAGTACAGGCTCGTTTATTGATGAGCATAGt            <  1:19830572/35‑1 (MQ=255)
                        aaCAGAGTACAGGCTCGTTTATTGATGAGCATAGt            <  1:184514/35‑1 (MQ=255)
                        aaCAGAGTACAGGCTCGTTTATTGATGAGCATAGt            <  1:18247463/35‑1 (MQ=255)
                         aCAGAGTACAGGCTCGTTTATTGATGAGCATAGTg           <  1:1501650/35‑1 (MQ=255)
                          cAGAGTACAGGCTCGTTTATTGATGAGCATAGTGa          <  1:8774123/35‑1 (MQ=255)
                          cAGAGTACAGGCTCGTTTATTGATGAGCATAGTGa          <  1:14931556/35‑1 (MQ=255)
                           agagTACAGGCTCGTTTATTGATGAGCATAGTGAc         <  1:1574907/35‑1 (MQ=255)
                           agagTACAGGCTCGTTTATTGATGAGCATAGTGAc         <  1:18284585/35‑1 (MQ=255)
                            gagTACAGGCTCGTTTATTGATGAGCATAGTGACa        <  1:10035820/35‑1 (MQ=255)
                             agTACAGGCTCGTTTATTGATGAGCATAGTGACaa       <  1:13498803/35‑1 (MQ=255)
                             agTACAGGCTCGTTTATTGATGAGCATAGTGACaa       <  1:2893130/35‑1 (MQ=255)
                              gTACAGGCTCGTTTATTGATGAGCATAGTGACAAg      <  1:11475450/35‑1 (MQ=255)
                              gTACAGGCTCGTTTATTGATGAGCATAGTGACAAg      <  1:385781/35‑1 (MQ=255)
                              gTACAGGCTCGTTTATTGATGAGCATAGTGACAAg      <  1:14999823/35‑1 (MQ=255)
                               tACAGGCTCGTTTATTGATGAGCATAGTGACAAGa     <  1:20560949/35‑1 (MQ=255)
                                 cAGGCTCGTTTATTGATGAGCATAGTGACAAGaaa   >  1:5847558/1‑35 (MQ=255)
                                 cAGGCTCGTTTATTGATGAGCATAGTGACAAGaaa   >  1:18982698/1‑35 (MQ=255)
                                 cAGGCTCGTTTATTGATGAGCATAGTGACAAGaaa   >  1:8366231/1‑35 (MQ=255)
                                 cAGGCTCGTTTATTGATGAGCATAGTGACAAGaaa   >  1:15404683/1‑35 (MQ=255)
                                 cAGGCTCGTTTATTGATGAGCATAGTGACAAGaaa   >  1:327219/1‑35 (MQ=255)
                                 cAGGCTCGTTTATTGATGAGCATAGTGACAAGaaa   >  1:2298884/1‑35 (MQ=255)
                                 cAGGCTCGTTTATTGATGAGCATAGTGACAAGaaa   <  1:22023/35‑1 (MQ=255)
                                 cAGGCTAGTTTATTGATGAGCATAGTGACAAGaaa   <  1:18049392/35‑1 (MQ=255)
                                  aGGCTCGTTTATTGATGAGCATAGTGACAAGaaaa  >  1:12488537/1‑35 (MQ=255)
                                  |                                  
TATTCTCCGATAAAGACGCTGGTTAACAGAGTACAGGCTCGTTTATTGATGAGCATAGTGACAAGAAAA  >  REL606/4210706‑4210774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.