Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 4,613,019 | +TT :: IS150 (+) | 100% | intergenic (‑16/‑91) | smp ← / → serB | hypothetical protein/3‑phosphoserine phosphatase |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 664686 = | NA (NA) | 139 (1.350) | 45/48 | NT | 100% | intergenic (‑77/‑49) | gltL/insJ‑2 | ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein |
? | REL606 | = 4613019 | 0 (0.000) | intergenic (‑16/‑90) | smp/serB | hypothetical protein/3‑phosphoserine phosphatase | |||||
* | ? | REL606 | = 3894996 | NA (NA) | 114 (1.160) | 38/46 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 4613020 = | 0 (0.000) | intergenic (‑17/‑89) | smp/serB | hypothetical protein/3‑phosphoserine phosphatase |
Only 100 of 206 total aligned reads displayed.
TCAGTTTTGTGCGAGCCATCTTCCACCCTTTGAAAATTTGAGACTTAATGTTGCCAGAAGCAATGGATA > REL606/4612985‑4613053 | tCAGTTTTGTGCGAGCCATCTTCCACCCTTTGaaa > 1:303077/1‑35 (MQ=255) tCAGTTTTGTGCGAGCCATCTTCCACCCTTTGaaa > 1:198324/1‑35 (MQ=255) tCAGTTTTGTGCGAGCCATCTTCCACCCTTTGaaa < 1:5769008/35‑1 (MQ=255) gcAGTTTTGTGCGAGCCATCTTCCACACTTTGaaa < 1:168367/34‑1 (MQ=255) cAGTTTTGTGCGAGCCATCTTCCACCCTTTGAAAt < 1:11190466‑M2/35‑2 (MQ=255) aGTTTTGTGCGAGCCATCTTCCACCCTTTGAAAtt > 1:19283449‑M2/1‑33 (MQ=255) gTTTTGTGCGAGCCATCTTCCACCCTTTGAAAttt < 1:8259346‑M2/35‑4 (MQ=255) tttGTGCGAGCCATCTTCCACCCTTTGAAAtttgt > 1:6593483‑M2/1‑30 (MQ=255) tttGTGCGAGCCATCTTCCACCCTTTGAAAtttgt < 1:11069007‑M2/35‑6 (MQ=255) ttGTGCGAGCCATCTTCCACCCTTTGAAAtttgta > 1:10487688‑M2/1‑29 (MQ=255) ttGTGCGAGCCATCTTCCACCCTTTGAAAtttgta > 1:7729859‑M2/1‑29 (MQ=255) tgtgCGAGCCATCTTCCACCCTTTGAAAtttgtac > 1:2451480‑M2/1‑28 (MQ=255) gtgCGAGCCATCTTCCACCCTTTGAAAtttgtact > 1:10892625‑M2/1‑27 (MQ=255) gtgCGAGCCATCTTCCACCCTTTGAAAtttgtact > 1:14962005‑M2/1‑27 (MQ=255) gtgCGAGCCATCTTCCACCCTTTGAAAtttgtact < 1:317460‑M2/35‑9 (MQ=255) tgCGAGCCATCTTCCACCCTTTGAAAtttgtactg > 1:3780583‑M2/1‑26 (MQ=255) gCGAGCCATCTTCCACCCTTTGAAAtttgtactgc < 1:13253012‑M2/35‑11 (MQ=255) gCGAGCAATCTTCCACCCTTTGAAAtttgtactgc > 1:2571125‑M2/1‑25 (MQ=255) cGAGCCATCTTCCACCCTTTGAAAtttgtactgca < 1:14253228‑M2/35‑12 (MQ=255) cGAGCCATCTTCCACCCTTTGAAAtttgtactgca < 1:1750036‑M2/35‑12 (MQ=255) cGAGCCATCTTCCACCCTTTGAAAtttgtactgca > 1:15672076‑M2/1‑24 (MQ=255) cGAGCCATCTTCCACCCTTTGAAAtttgtactgca > 1:4085487‑M2/1‑24 (MQ=255) gAGCCATCTTCCACCCTTTGAAAtttgtactgcac < 1:13513763‑M2/35‑13 (MQ=255) gAGCCATCTTCCACCCTTTGAAAtttgtactgcac > 1:3290360‑M2/1‑23 (MQ=255) gAGCCATCTTCCACCCTTTGAAAtttgtactgcac < 1:14605840‑M2/35‑13 (MQ=255) gAGCCATCTTCCACCCTTTGAAAtttgtactgcac > 1:4773024‑M2/1‑23 (MQ=255) gCCATCTTCCACCCTTTGAAAtttgtactgcaccc > 1:2809934‑M2/1‑21 (MQ=255) gCCATCTTCCACCCTTTGAAAtttgtactgcaccc < 1:1803311‑M2/35‑15 (MQ=255) gCCATCTTCCACCCTTTGAAAtttgtactgcaccc > 1:16690858‑M2/1‑21 (MQ=255) ccATCTTCCACCCTTTGAAGtttgtactgcaccca > 1:12929704‑M2/1‑20 (MQ=255) ccATCTTCCACCCTTTGAAAtttgtactgcaccca < 1:19117665‑M2/35‑16 (MQ=255) ccATCTTCCACCCTTTGAAAtttgtactgcaccca < 1:4820886‑M2/35‑16 (MQ=255) ccATCTTCCACCCTTTGAAAtttgtactgcaccca < 1:9687312‑M2/35‑16 (MQ=255) cATCTTCCACCCTTTGAAAtttgtactgcacccat < 1:14653044‑M2/35‑17 (MQ=255) cATCTTCCACCCTTTGAAAtttgtactgcacccat < 1:835056‑M2/35‑17 (MQ=255) cATCTTCCACCCTTTGAAAtttgtactgcacccat < 1:19502128‑M2/35‑17 (MQ=255) cATCTTCCACCCTTTGAAAtttgtactgcacccat < 1:2166452‑M2/35‑17 (MQ=255) cATCTTCCACCCTTTGAAAtttgtactgcacccat > 1:5268660‑M2/1‑19 (MQ=255) aTCTTCCACCCTTTGAAAtttgtactgcacccatt > 1:18662530‑M2/1‑18 (MQ=255) aTCTTCCACCCTTTGAAAtttgtactgcacccatt < 1:4569408‑M2/35‑18 (MQ=255) aTCTTCCACCCTTTGAAAtttgtactgcacccatt < 1:10006959‑M2/35‑18 (MQ=255) tCTTCCACCCTTTGAAAtttgtactgcacctattt < 1:5584802‑M2/35‑19 (MQ=255) tCTTCCACCCTTTGAAAtttgtactgcacccattt > 1:4971545‑M2/1‑17 (MQ=255) cTTCCACCCTTTGAAAtttgtactgcacccatttt < 1:3933242‑M2/35‑20 (MQ=255) cTTCCACCCTTTGAAAtttgtactgcacccatttt < 1:2992080‑M2/35‑20 (MQ=255) ttCCACCCTTTGAAAtttgtactgcacccattttg > 1:17684854‑M2/1‑15 (MQ=255) ttCCACCCTTTGAAAtttgtactgcacccattttg < 1:1790061‑M2/35‑21 (MQ=255) ttCCACCCTTTGAAAtttgtactgcacccattttg > 1:6066973‑M2/1‑15 (MQ=255) ttCCACCCTTTGAAAtttgtactgcacccattttg < 1:1547994‑M2/35‑21 (MQ=255) tCCACCCTTTGAAAtttgtactgcacccattttgt < 1:4256666‑M2/35‑22 (MQ=255) tCCACCCTTTGAAAtttgtactgcacccattttgt > 1:3422454‑M2/1‑14 (MQ=255) tCCACCCTTTGAAAtttgtactgcacccattttgt > 1:15789193‑M2/1‑14 (MQ=255) tCCACCCTTTGAAAtttgtactgcacccattttgt < 1:1831097‑M2/35‑22 (MQ=255) ccACCCTTTGAAAtttgtactgcacccattttgtt > 1:16350940‑M2/1‑13 (MQ=255) cACCCTTTGAAAtttgtactgcacccattttgttg < 1:15025159‑M2/35‑24 (MQ=255) cACCCTTTGAAAtttgtactgcacccattttgttg > 1:18066957‑M2/1‑12 (MQ=255) aCCCTTTGAAAtttgtactgcacccattttgttgg > 1:7998966‑M2/1‑11 (MQ=255) aCCCTTTGAAAtttgtactgcacccattttgttgg < 1:7646432‑M2/35‑25 (MQ=255) aCCCTTTGAAAtttgtactgcacccattttgttgg < 1:12489198‑M2/35‑25 (MQ=255) aCCCTTTGAAAtttgtactgcacccattttgttgg > 1:14127314‑M2/1‑11 (MQ=255) aCCCTTTGAAAtttgtactgcacccattttgttgg < 1:19221906‑M2/35‑25 (MQ=255) cccTTTGAAAtttgtactgcacccattttgttgga > 1:17596520‑M2/1‑10 (MQ=255) ccTTTGAAAtttgtactgcacccattttgttggac > 1:7773074‑M2/1‑9 (MQ=255) cTTTGAAAtttgtactgcacccattttgttggacg > 1:1435591‑M2/1‑8 (MQ=255) cTTTGAAAtttgtactgcacccattttgttggacg < 1:17383977‑M2/35‑28 (MQ=255) cTTTGAAAtttgtactgcacccattttgttggacg < 1:14880756‑M2/35‑28 (MQ=255) cTTTGAAAtttgtactgaacccattttgttggacg > 1:3527261‑M2/1‑8 (MQ=255) tttGAAAtttgtactgcacccattttgttggacga < 1:7375556‑M2/35‑29 (MQ=255) tttGAAAtttgtactgcacccattttgttggacga < 1:17179285‑M2/35‑29 (MQ=255) tttGAAAtttgtactgcacccattttgttggacga < 1:14303696‑M2/35‑29 (MQ=255) ttGAAAtttgtactgcacccattttgttggacgat > 1:10083207‑M2/1‑6 (MQ=255) ttGAAAtttgtactgcacccattttgttggacgat < 1:11821936‑M2/35‑30 (MQ=255) ttGAAAtttgtactgcacccattttgttggacgat > 1:1419831‑M2/1‑6 (MQ=255) ttGAAAtttgtactgcacccattttgttggacgat > 1:12358788‑M2/1‑6 (MQ=255) tGAAAtttgtactgcacccattttgttggacgatg > 1:13870939‑M2/1‑5 (MQ=255) tGAAAtttgtactgcacccattttgttggacgatg < 1:6549959‑M2/35‑31 (MQ=255) tGAAAtttgtactgcacccattttgttggacgatg > 1:16716455‑M2/1‑5 (MQ=255) tGAAAtttgtactgcacccattttgttggacgatg < 1:11482850‑M2/35‑31 (MQ=255) tGAAAtttgtactgcacccattttgttggacgatg < 1:9306884‑M2/35‑31 (MQ=255) gAAAtttgtactgcacccattttgttggacgatga > 1:7244517‑M2/1‑4 (MQ=255) aaatttgtactgcacccattttgttggacgatgaa > 1:9416534‑M2/1‑3 (MQ=255) aaatttgtactgcacccattttgttggacgatgaa > 1:9627609‑M2/1‑3 (MQ=255) aaatttgtactgcacccattttgttggacgatgaa < 1:3678123‑M2/35‑33 (MQ=255) aaatttgtactgcacccattttgttggacgatgaa < 1:12745449‑M2/35‑33 (MQ=255) catgtgtactgcacccattttgttggacgatgaaa < 1:20114320‑M2/34‑34 (MQ=255) catgtgtactgcacccattttgttggacgatgaaa < 1:12223212‑M2/34‑34 (MQ=255) aatttgtactgcacccattttgttggacgatgaaa < 1:14001529‑M2/35‑34 (MQ=255) aatttgtactgcacccattttgttggacgatgaaa < 1:18946184‑M2/35‑34 (MQ=255) aatttgtactgcacccattttgttggacgatgaaa < 1:10113413‑M2/35‑34 (MQ=255) aatttgtactgcacccattttgttggacgatgaaa > 1:10681655‑M2/1‑2 (MQ=255) aatttgtactgcacccattttgttggacgatgaaa < 1:2048123‑M2/35‑34 (MQ=255) aatttgtactgcacccattttgttggacgatgaaa < 1:12305354‑M2/35‑34 (MQ=255) atttgtactgcacccattttgttggacgatgaaat < 1:7037569‑M2/35‑35 (MQ=255) atttgtactgcacccattttgttggacgatgaaat > 1:19526277‑M2/1‑1 (MQ=255) atttgtactgcacccattttgttggacgatgaaat < 1:6136462‑M2/35‑35 (MQ=255) atttgtactgcacccattttgttggacgatgaaat < 1:1816326‑M2/35‑35 (MQ=255) atttgtactgcacccattttgttggacgatgaaat < 1:5702173‑M2/35‑35 (MQ=255) atttgtactgcacccattttgttggacgatgaaat < 1:15367327‑M2/35‑35 (MQ=255) atttgtactgcacccattttgttggacgatgaaat > 1:5401886‑M2/1‑1 (MQ=255) atgtgtactgcacccattttgttggacgatgaaat < 1:6770526‑M2/35‑35 (MQ=255) | TCAGTTTTGTGCGAGCCATCTTCCACCCTTTGAAAATTTGAGACTTAATGTTGCCAGAAGCAATGGATA > REL606/4612985‑4613053 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |