New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1050924 =43 (0.420)6 (0.070) 4/40 NT 9.8% coding (580/1794 nt) hyaB hydrogenase 1, large subunit
?REL606 1543472 = 75 (0.880)coding (969/1536 nt) xasA predicted glutamate:gamma‑aminobutyric acid antiporter

TAGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1050961‑1050924
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGTTTTTCTGCGCTGTGACATACATCCCGCGAGAA  >  REL606/1543472‑1543505
                                                                        
TAGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGG                                       >  1:600832/1‑35
TAGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGG                                       >  1:17962676/1‑35
 AGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGC                                      <  1:12150663/35‑1
 AGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGC                                      >  1:13576992/1‑35
 AGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGC                                      >  1:14712614/1‑35
 AGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGC                                      >  1:15870577/1‑35
 AGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGC                                      >  1:2173656/1‑35
  GTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGga                                     >  1:7149102/1‑33
  GTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGCA                                     >  1:3628723/1‑35
  GTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGCA                                     >  1:14453982/1‑35
  GTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGCA                                     <  1:6637864/35‑1
   TGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGCAG                                    >  1:5641613/1‑35
   TGGGCAAAGCCCATAAGGTTAGCTTCTGGCGGCAG                                    <  1:16700321/35‑1
    GGGCAAAGCCCATCAGGTTAGCTTCTGGCGGGAGG                                   >  1:8813202/1‑35
     gtCAAAGCCCATCAGGTTAGCTTCTGGCGGCAGGT                                  >  1:18608517/3‑35
     GGCAAAGCCCATCAGGTTAGCTTCTGGCGGGAGGT                                  >  1:1977307/1‑35
       CAAAGCCCATCAGGTTAGCTTCTGGCGGCAGGTTT                                >  1:1929828/1‑35
       CAAAGCCCATCAGGTTAGCTTCTGGCGGCAGGTTT                                >  1:4022043/1‑35
        AAAGCCCATCAGGTTAGCTTCTGGCGGCAGGTTgt                               >  1:8452009/1‑33
        AAAGCCCATCAGGTTAGCTTCTGGCGGCAGGTTTT                               >  1:14019352/1‑35
         AAGCCCATCAGGTTAGCTTCTGGCGGCAGGTTTTT                              >  1:5579537/1‑35
          AGCCCATCAGGTTAGCTTCTGGCGGCAGGTTTTTa                             >  1:12317471/1‑34
          AGCCCATCAGGTTAGCTTCTGGCGGCAGGTTTTTC                             >  1:2498755/1‑35
           GCCCATCAGGTTAGCTTCTGGCGGCAGGTTTTTCT                            >  1:1695568/1‑35
            CCCATCAGGTTAGCTTCTGGCGGCCGGTTTTTCTt                           >  1:3673906/1‑34
             CCATCAGGTTAGCTTCTGGCGGCAGGTTTTTATGC                          >  1:8598559/1‑35
                                  GCAGGTTTTTCTGCGCTGTGACATACATCCCGCGA     <  1:50841/35‑1
                                   CAGGTTTTTCTGCGCTGTGACATACATCCCGCGAG    >  1:7340066/1‑35
                                   CAGGTTTTTCTGCGCTGTGACATACATCCCGCGAG    >  1:4176488/1‑35
                                   CAGGTTTTTCTGCGCTGTGACATACATCCCGCGAG    <  1:3357710/35‑1
                                   CAGGTTTTTCTGCGCTGTGACATACATCCCGCGAG    <  1:20433569/35‑1
                                   CAGGTTTTTCTGCGCTGTGACATACATCCCGCGAG    >  1:14054279/1‑35
                                    AGGTTTTTCTGCGCTGTGACATACGTCCCGCGAGA   <  1:1893952/35‑1
                                    AGGTTTTTCTGCGCTGTGACATACATCCCGCGAGA   >  1:4967064/1‑35
                                    AGGTTTTTCTGCGCTGTGACATACATCCCGCGAGA   <  1:4947865/35‑1
                                    AGGTTTTTCTGCGCTGTGACATACATCCCGCGAGA   >  1:577641/1‑35
                                    AGGTTTTTCTGCGCTGTGACATACATCCCGCGAGA   <  1:3931588/35‑1
                                    AGGTTTTTCTGCGCTGTGACATACATCCCGCGAGA   >  1:6570085/1‑35
                                    AGGTTTTTCTGCGCTGTGACATACATCCCGCGAGA   >  1:16178126/1‑35
                                     GGTTTTTCTGCGCTGTGACATACATCCCGCGAGAA  <  1:5295241/35‑1
                                     GGTTTTTCTGCGCTGTGACATACATCCCGCGAGAA  <  1:12028257/35‑1
                                                                        
TAGTGGGCAAAGCCCATCAGGTTAGCTTCTGGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1050961‑1050924
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGTTTTTCTGCGCTGTGACATACATCCCGCGAGAA  >  REL606/1543472‑1543505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.