New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 741667 = | 102 (0.990) | 24 (0.310) | 5/36 | NT | 25.9% | coding (2171/2802 nt) | sucA | alpha‑ketoglutarate decarboxylase |
? | REL606 | = 1476120 | 81 (0.790) | coding (71/1176 nt) | ydcO | predicted benzoate transporter |
TGCTCCGGCCCCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/741682‑741667 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCAGCGGCAATAATCTGGCAAGCAGCGATTGT < REL606/1476120‑1476087 |||||| tgtTCCGGCCCCTGCCGTTGTTGTTCAGCGGCAAT < 1:7661950/32‑1 gtTCCGGCCCCTGCCGTTGTTGTTCAGCGGCAATA < 1:18596170/33‑1 TCCGGGCCCTGCCGTTGTTGTTCAGCGGCAATAAT < 1:841073/35‑1 TCCGGCCCCTGCCGTTGTTGTTCAGCGGCAATAAT < 1:5857886/35‑1 TCCAGCCCCTGCCGTTGTTGTTCAGCGGCAATAAT < 1:20123354/35‑1 ggGGCCCCTGCCGTTGTTGTTCAGCGGCAATAATC < 1:17568907/33‑1 CCGGGCCCTGCCGTTGTTGTTCAGCGGCAATAATC < 1:45607/35‑1 CGGGCCCTGCCGTTGTTGTTCAGCGGCAATAATCT < 1:12276202/35‑1 CGGCCCCTGCCGTTGTTGTTCAGCGGCAATAATCT < 1:20020974/35‑1 GGCCCCTGCCGTTGTTGTTCAGCGGCAATAATCTG < 1:8215369/35‑1 GGCCCCTGCCGTTGTTGTTCAGCGGCAATAATCTG < 1:8683079/35‑1 ggCCCTGCCGTTGTTGTTCAGCGGCAATAATCTGG < 1:3538475/33‑1 ggCCCTGCCGTTGTTGTTCAGCGGCAATAATCTGG < 1:402283/33‑1 gcgCCTGCCGTTGTTGTTCAGCGGCAATAATCTGG < 1:3954015/32‑1 GCCCCTGCCGTTGTTGTTCAGCGGCAATAATCTGG < 1:4985138/35‑1 gCCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGt < 1:2759880/34‑2 CCCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGt < 1:16407744/35‑2 CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg < 1:9579786/35‑3 CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg < 1:7406187/35‑3 CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg < 1:7181890/35‑3 CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg < 1:2506037/35‑3 CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg < 1:16705236/35‑3 CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg < 1:13154311/35‑3 CCCTGCCGTTGTTGTTCAGCGGCAATAATCTGGtg < 1:10926945/35‑3 TGTTCAGCGGCAATAATCTGGCAAGCAGCGATTGT < 1:8834280/35‑1 |||||| TGCTCCGGCCCCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/741682‑741667 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCAGCGGCAATAATCTGGCAAGCAGCGATTGT < REL606/1476120‑1476087 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |