New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 296632071 (0.690)9 (0.120) 3/36 NT 10.0% coding (1067/1992 nt) tktA transketolase 1, thiamin‑binding
?REL606 3882316 = 109 (1.410)coding (102/816 nt) atpB F0F1 ATP synthase subunit A

Only 100 of 159 total aligned reads displayed.

CGCTTCGATAGCATTCTGAGACGCTTTACGGCTGGCGATTTTCGCCGGATTAGCCTGCAGTTTAGCGAT  >  REL606/2966286‑2966354
                                  |                                  
cGCTTCGATAGCATTCTGAGACGCTTTACGGCTGG                                    <  1:17462861‑M1/35‑1 (MQ=255)
cGCTTCGATAGCATTCTGAGACGCTTTACGGCTGG                                    <  1:9144645‑M1/35‑1 (MQ=255)
cGCTTCGATAGCATTCTGAGACGCTTTACGGCTGG                                    >  1:7243982‑M1/1‑35 (MQ=255)
cGCTTCGATAGCATTCTGAGACGCTTTACGGCTGG                                    <  1:7260884‑M1/35‑1 (MQ=255)
 gCTTCGATAGCATTCTGAGACGCTTTACGGCTGGg                                   >  1:9833426‑M1/1‑34 (MQ=255)
 gCTTCGATAGCATTCTGAGACGCTTTACGGCTGGg                                   >  1:4891808‑M1/1‑34 (MQ=255)
 gCTTCGATAGCATTCTGAGACGCTTTACGGCTGGg                                   >  1:15989979‑M1/1‑34 (MQ=255)
 gCTTCGATAGCATTCTGAGACGCTTTACGGCTGGg                                   >  1:892599‑M1/1‑34 (MQ=255)
 gCTTCGATAGCATTCTGAGACGCTTTACGGCTGGc                                   <  1:18615872/35‑1 (MQ=255)
 gCTTCGATAGCATTCTGAGACGATTTACGGCTGGc                                   <  1:13264014/35‑1 (MQ=255)
  cTTCGATAGCATTCTGAGACGCTTTACGGCTGGgg                                  >  1:7186942‑M1/1‑33 (MQ=255)
  cTTCGATAGCATTCTGAGACGCTTTACGGCTGGgg                                  >  1:8278007‑M1/1‑33 (MQ=255)
  cTTCGATAGCATTCTGAGACGCTTTACGGCTGGCg                                  <  1:2673195/35‑1 (MQ=255)
  cTTCGATAGCATTCTGAGACGCTTTACGGCTGGCg                                  <  1:8903063/35‑1 (MQ=255)
   ttCGATAGCATTCTGAGACGCTTTACGGCTGGggg                                 >  1:7549252‑M1/1‑32 (MQ=255)
   ttCGATAGCATTCTGAGACGCTTTACGGCTGGggg                                 >  1:15392482‑M1/1‑32 (MQ=255)
   ttCGATAGCATTCTGAGACGCTTTACGGCTGGggg                                 >  1:15366508‑M1/1‑32 (MQ=255)
   ttCGATAGCATTCTGAGACGCTTTACGGCTGGCGa                                 <  1:17832138/35‑1 (MQ=255)
   ttCGATAGCATTCTGAGACGCTTTACGGCTGGCGa                                 <  1:11803472/35‑1 (MQ=255)
    tCGATAGCATTCTGAGACGCTTTACGGCTGGgggg                                >  1:5001632‑M1/1‑31 (MQ=255)
    tCGATAGCATTCTGAGACGCTTTACGGCTGGgggg                                >  1:18902922‑M1/1‑31 (MQ=255)
    tCGATAGCATTCTGAGACGCTTTACGGCTGGgggg                                >  1:13673834‑M1/1‑31 (MQ=255)
    tCGATAGCATTCTGAGACGCTTTACGGCTGGgggg                                >  1:15665337‑M1/1‑31 (MQ=255)
     cGATAGCATTCTGAGACGCTTTACTGCTGGCGAtt                               >  1:2870487/1‑35 (MQ=255)
     cGATAGCATTCTGAGACGCTTTACGGCTGGggggt                               >  1:6675048‑M1/1‑30 (MQ=255)
      gATAGCATTCTGAGACGCTTTACGGCTGGCGAttt                              <  1:7709989/35‑1 (MQ=255)
      gATAGCATTCTGAGAAGCTTTACGGCTGGCGAttt                              <  1:19453734/35‑1 (MQ=255)
       aTAGCATTCTGAGACGCTTTACGGCTGGgggtttt                             >  1:18674926‑M1/1‑28 (MQ=255)
       aTAGCATTCTGAGACGCTTTACGGCTGGggggttt                             >  1:2992234‑M1/1‑28 (MQ=255)
       aTAGCATTCTGAGACGCTTTACGGCTGGCGAtttt                             <  1:20401696/35‑1 (MQ=255)
        tAGCATTCTGAGACGCTTTACGGCTGGggggtttt                            >  1:6757197‑M1/1‑27 (MQ=255)
        tAGCATTCTGAGACGCTTTACGGCTGGggggtttt                            >  1:14445773‑M1/1‑27 (MQ=255)
        tAGCATTCTGAGACGCTTTACGGCTGGCGATTTTc                            <  1:5745994/35‑1 (MQ=255)
        naGCATNCTGAGACGCTTTACGGCTGGCGATTTTc                            <  1:1209355/34‑1 (MQ=255)
          gCATTCTGAGACGCTTTACGGCTGGCGATTTTCGc                          <  1:2683816/35‑1 (MQ=255)
           cATTCTGAGACGCTTTACGGCTGGggggtttttgc                         >  1:19484119‑M1/1‑24 (MQ=255)
           cATTCTGAGACGCTTTACGGCTGGCGATTTTCGcc                         <  1:10804985/35‑1 (MQ=255)
           cATTCTGAGACGCTTTACGGCTGGCGATTTTCGcc                         <  1:10260070/35‑1 (MQ=255)
            aTTCTGAGACGCTTTACGGCTGGCGATTTTCGCCg                        <  1:94554/35‑1 (MQ=255)
            aTTCTGAGACGCTTTACGGCTGGCGATTTTCGCCg                        <  1:13289171/35‑1 (MQ=255)
             ttCTGAGACGCTTTACGGCTGGCGATTTTCGCCgg                       <  1:4871502/35‑1 (MQ=255)
              tCTGAGACGCTTTACGGCTGGCGATTTTCGCCGGn                      <  1:4118515/35‑1 (MQ=255)
              tCTGAGACGCTTTACGGCTGGCGATTTTCGCCGGa                      <  1:16489756/35‑1 (MQ=255)
              tCTGAGACGCTTTACGGCTGGCGATTTTCGCCGGa                      <  1:17760906/35‑1 (MQ=255)
              tCTGAGACGCTTTACGGCTGGCGATTTTCGCCGGa                      <  1:15987068/35‑1 (MQ=255)
              tCTGAGACGCTTTACGGCTGGCGATTTTCGCCGGa                      <  1:12414712/35‑1 (MQ=255)
               cTGAGACGCTTTACGGCTGGCGATTTTCGCCGGAt                     <  1:5062171/35‑1 (MQ=255)
                tGAGACGCTTTACGGCTGGCGATTTTCGCCGGAtt                    <  1:4090014/35‑1 (MQ=255)
                tGAGACGCTTTACGGCTGGCGATTTTCGCCGGAtt                    <  1:3130856/35‑1 (MQ=255)
                 gagaCGCTTTACGGCTGGCGATTTTCGCCGGATTa                   <  1:2774336/35‑1 (MQ=255)
                  agaCGCTTTACGGCTGGCGATTTTCGCCGGATTAg                  <  1:9359885/35‑1 (MQ=255)
                  agaCGCTTTACGGCTGGCGATTTTCGCCGGATTAg                  <  1:17444134/35‑1 (MQ=255)
                  agaCGCTTTACGGCTGGCGATTTTCGCCGGATTAg                  <  1:17182284/35‑1 (MQ=255)
                  agaCGCTTTACGGCTGGCGATTTTCGCCGGATTAg                  <  1:8875102/35‑1 (MQ=255)
                   gaCGCTTTACGGCTGGCGATTTTCGCCGGATTAGc                 <  1:3750912/35‑1 (MQ=255)
                    aCGCTTTACGGCTGGCGATTTTCGCCGGATTAGcc                <  1:9039403/35‑1 (MQ=255)
                     cGCTTTACGGCTGGCGATTTTCGCCGGATTAGCCt               <  1:5855866/35‑1 (MQ=255)
                      gCTTTACGGCTGGCGATTTTCGCCGGATTAGCCTg              <  1:10052030/35‑1 (MQ=255)
                      gCTTTACGGCTGGCGATTTTCGCCGGATTAGCCTg              <  1:19768551/35‑1 (MQ=255)
                      gCTTTACGGCTGGAGATTTTCGCCGGATTAGCCTg              <  1:6014653/35‑1 (MQ=255)
                        tttACGGCTGGCGATTTTCGCCGGATTAGCCTGCa            <  1:708824/35‑1 (MQ=255)
                        tttACGGCTGGCGATTTTCGCCGGATTAGCCTGCa            <  1:6461189/35‑1 (MQ=255)
                        tttACGGCTGGCGATTTTCGCCGGATTAGCCTGCa            <  1:522161/35‑1 (MQ=255)
                        tttACGGCTGGCGATTTTCGCCGGATTAGCCTGCa            <  1:13729318/35‑1 (MQ=255)
                        tttACGGCTGGCGATTTTCGCCGGATTAGCCTGCa            <  1:1146989/35‑1 (MQ=255)
                         ttACGGCTGGCGATTTTCGCCGGATTAGCCTGCAg           <  1:300844/35‑1 (MQ=255)
                         ttACGGCTGGCGATTTTCGCCGGATTAGCCTGCAg           <  1:10877500/35‑1 (MQ=255)
                          tACGGCTGGCGATTTTCGCCGGATTAGCCTGCAGt          <  1:13339745/35‑1 (MQ=255)
                          tACGGCTGGCGATTTTCGCCGGATTAGCCTGCAGt          <  1:7806551/35‑1 (MQ=255)
                           aCGGCTGGCGATTTTCGCCGGATTAGCCTGCAGtt         <  1:4309885/35‑1 (MQ=255)
                           aCGGCTGGCGATTTTCGCCGGATTAGCCTGCAGtt         <  1:1590486/35‑1 (MQ=255)
                            cGGCTGGCGATTTTCGCCGGATTAGCCTGCAGttt        <  1:18723774/35‑1 (MQ=255)
                            cGGCTGGCGATTTTCGCCGGATTAGCCTGCAGttt        <  1:1426033/35‑1 (MQ=255)
                            cGGCTGGCGATTTTCGCCGGATTAGCATGCAGttt        <  1:6211232/35‑1 (MQ=255)
                             ggCTGGCGATTTTCGCCGGATTAGCCTGCAGTTTa       <  1:19134191/35‑1 (MQ=255)
                             ggCTGGCGATTTTCGCCGGATTAGCCTGCAGTTTa       <  1:18512299/35‑1 (MQ=255)
                             ggCTGGCGATTTTCGCCGGATTAGCCTGCAGTTTa       <  1:14556298/35‑1 (MQ=255)
                             ggCTGGCGATTTTCGCCGGATTAGCCTGCAGTTTa       >  1:10604715/1‑35 (MQ=255)
                              gCTGGCGATTTTCGCCGGATTAGCCTGCAGTTTAg      <  1:16813972/35‑1 (MQ=255)
                              gCTGGCGATTTTCGCCGGATTAGCCTGCAGTTTAg      <  1:1645595/35‑1 (MQ=255)
                               cTGGCGATTTTCGCCGGATTAGCCTGCTGTTTAGc     >  1:2586404/1‑35 (MQ=255)
                               cTGGCGATTTTCGCCGGATTAGCCTGCAGTTTGGc     <  1:2096054/35‑1 (MQ=255)
                               cTGGCGATTTTCGCCGGATTAGCCTGCAGTTTAGc     <  1:17073206/35‑1 (MQ=255)
                               cTGGCGATTTTCGCCGGATTAGCCTGCAGTTTAGc     <  1:11956552/35‑1 (MQ=255)
                               cTGGCGATTTTCGCCGGATTAGCCTGCAGTTTAGc     <  1:17660018/35‑1 (MQ=255)
                               cTGGCGATTTTCGCCGGATTAGCCTGCAGTTTAGc     <  1:19044224/35‑1 (MQ=255)
                                tGGCGATTTTCGCCGGATTAGCCTGCAGTTTAGCg    <  1:8406173/35‑1 (MQ=255)
                                tGGCGATTTTCGCCGGATTAGCCTGCAGTTTAGCg    <  1:7984637/35‑1 (MQ=255)
                                 ggCGATTTTCGCCGGATTAGCCTGCAGTTTAGCGa   <  1:2012641/35‑1 (MQ=255)
                                 ggCGATTTTCGCCGGATTAGCCTGCAGTTTAGCGa   >  1:13070459/1‑35 (MQ=255)
                                 ggCGATTTTCGCCGGATTAGCCTGCAGTTTAGCGa   <  1:14908485/35‑1 (MQ=255)
                                  gggggttttgtggatccaccagcgagaatgtacgc  <  1:1420046‑M1/35‑35 (MQ=255)
                                  gggggttttgtggatccaccagcgagaatgtacgc  >  1:10544002‑M1/1‑1 (MQ=255)
                                  gggggttttgtggatccaccagcgagaatgtacgc  >  1:7057531‑M1/1‑1 (MQ=255)
                                  gCGATTTTCGCGGGATTAGCCTGCAGTTTAGCGAt  <  1:3389100/35‑1 (MQ=255)
                                  gCGATTTTCGCCGGATTAGCCTGCAGTTTAGCGAt  >  1:74242/1‑35 (MQ=255)
                                  gCGATTTTCGCCGGATTAGCCTGCAGTTTAGCGAt  <  1:13066605/35‑1 (MQ=255)
                                  gCGATTTTCGCCGGATTAGCCTGCAGTTTAGCGAt  <  1:11968079/35‑1 (MQ=255)
                                  gCGATTTTCGCCGGATTAGCCTGCAGTTTAGCGAt  <  1:15762483/35‑1 (MQ=255)
                                  gCGATTTTCGCCGGATTAGCCTGCAGTTTAGCGAt  <  1:221445/35‑1 (MQ=255)
                                  |                                  
CGCTTCGATAGCATTCTGAGACGCTTTACGGCTGGCGATTTTCGCCGGATTAGCCTGCAGTTTAGCGAT  >  REL606/2966286‑2966354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.