New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 217501745 (0.440)18 (0.200) 5/42 NT 24.6% coding (1595/1716 nt) dld D‑lactate dehydrogenase, FAD‑binding, NADH independent
?REL606 = 4351424 71 (0.790)intergenic (+32/‑106) groEL/yjeI chaperonin GroEL/hypothetical protein

Only 100 of 117 total aligned reads displayed.

CGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAG  >  REL606/2174983‑2175051
                                  |                                  
cgcggcgcgCAGTACCCTGCCGAGCATAACGTCGG                                    <  1:19848530‑M1/35‑1 (MQ=255)
 gcggcgcgCAGTACCCTGCCGAGCATAACGTCGGt                                   <  1:14493287/35‑1 (MQ=255)
 gcggcgcgCAGTACCCTGCCGAGCATAACGTCGGt                                   <  1:18753653/35‑1 (MQ=255)
  cggcgggCAGTACCCTGCCGAGCATAACGTCGGTc                                  <  1:2834705/35‑1 (MQ=255)
  cggcgcgCAGTACCCTGCCGAGCATAACGTCGGgg                                  >  1:14213556‑M1/1‑33 (MQ=255)
  cggcgcgCAGTACCCTGCCGAGCATAACGTCGGgg                                  >  1:11647137‑M1/1‑33 (MQ=255)
  cggcgcgCAGTACCCTGCCGAGCATAACGTCGGTc                                  <  1:5003859/35‑1 (MQ=255)
   ggcgcgCAGTACCCTGCCGAGCATAACGTCGGgcg                                 >  1:19406406‑M1/1‑32 (MQ=255)
    gcgcgcAGTGCCCTGCCGAGCATAACGTCGGTCAt                                <  1:3992485/35‑1 (MQ=255)
    gcgcgcAGTACCCTTCCGAGCATAACGTCGGgggg                                >  1:14190980‑M1/1‑31 (MQ=255)
    gcgcgcAGTACCCTGCCGAGCATAACGTCGGggcg                                >  1:10060314‑M1/1‑31 (MQ=255)
    gcgcgcAGTACCCTGCCGAGCATAACGTCGGgcgt                                >  1:11030691‑M1/1‑31 (MQ=255)
    gcgcgcAGTACCCTGCCGAGCATAACGTCGGTCAt                                <  1:17873122/35‑1 (MQ=255)
    gcgcgcAGTACCCTGCCGAGCATAACGTCGGTCAt                                <  1:14613047/35‑1 (MQ=255)
    gcgcgcAGTACCCTGCCGAGCATAACGTCGGTCAt                                <  1:5168851/35‑1 (MQ=255)
    gcgcgcAGTACCCTGCCGAGCATAACGTCGGTCAt                                <  1:5438760/35‑1 (MQ=255)
     cgcgcAGTACCCTGCCGAGCATAACGTCGGggggt                               >  1:12481939‑M1/1‑30 (MQ=255)
     cgcgcAGTACCCTGCCGAGCATAACGTCGGTCAtt                               <  1:1851423/35‑1 (MQ=255)
      gcgcAGTACCCTGCCGAGCATAACGTCGGgggttt                              >  1:15252824‑M1/1‑29 (MQ=255)
      gcgcAGTACCCTGCCGAGCATAACGTCGGgggttt                              >  1:14629470‑M1/1‑29 (MQ=255)
      gcgcAGTACCCTGCCGAGCATAACGTCGGggggtt                              >  1:1836624‑M1/1‑29 (MQ=255)
      gcgcAGTACCCTGCCGAGCATAACGTCGGggggtt                              >  1:10700903‑M1/1‑29 (MQ=255)
      gcgcAGTACCCTGCCGAGCATAACGTCGGgggcgt                              >  1:15718224‑M1/1‑29 (MQ=255)
      gcgcAGTACCCTGCCGAGCATAACGTCGGTCAttt                              <  1:19105100/35‑1 (MQ=255)
       cgcAGTCCCCTGCCGAGCATAACGTCGGTCATTTg                             <  1:12019357/35‑1 (MQ=255)
       cgcAGTACCCTGCCGAGCATAACGTCGGgggtttg                             >  1:11689061‑M1/1‑28 (MQ=255)
       cgcAGTACCCTGCCGAGCATAACGTCGGggggttt                             >  1:16122291‑M1/1‑28 (MQ=255)
        gcAGTACCCTGCCGAGCATAACGTCGGgggcttgt                            >  1:13438375‑M1/1‑27 (MQ=255)
        gcAGTACCCTGCCGAGCATAACGTCGGTCATTTGt                            <  1:20115638/35‑1 (MQ=255)
         cAGTACCCTGCCGAGCATAACGTAGGTCATTTGta                           <  1:14578141/35‑1 (MQ=255)
          aGTACCCTGCCTAGCATAACGTCGGgggtttgttt                          >  1:19566853‑M1/1‑25 (MQ=255)
          aGTACCCTGCCGAGCATAACGTCGGgggttttttt                          >  1:10724678‑M1/1‑25 (MQ=255)
          aGTACCCTGCCGAGCATAACGTCGGgggtttgttt                          >  1:6130990‑M1/1‑25 (MQ=255)
          aGTACCCTGCCGAGCATAACGTCGGgggtttgttt                          >  1:2099526‑M1/1‑25 (MQ=255)
          aGTACCCTGCCGAGCATAACGTCGGggggttgttt                          >  1:17978284‑M1/1‑25 (MQ=255)
          aGTACCCTGCCGAGCATAACGTCGGTCATTTGtat                          <  1:19120361/35‑1 (MQ=255)
           gTACCCTGCCGAGCATAACGTCGTTCATTTGtata                         >  1:18633362/1‑35 (MQ=255)
           gTACCCTGCCGAGCATAACGTCGGgggtttgttta                         >  1:9077867‑M1/1‑24 (MQ=255)
           gTACCCTGCCGAGCATAACGTCGGgggtttgttta                         >  1:18030506‑M1/1‑24 (MQ=255)
           gTACCCTGCCGAGCATAACGTCGGTCATTTGtata                         <  1:19089313/35‑1 (MQ=255)
            tACCCTGCCGAGCATAACGTCGGgggtttgtttta                        >  1:9718289‑M1/1‑23 (MQ=255)
            tACCCTGCCGAGCATAACGTCGGTCATTTGTATaa                        <  1:2650892/35‑1 (MQ=255)
            tACCCTGCCGAGCATAACGTCGGTCATTTGTATaa                        <  1:11191560/35‑1 (MQ=255)
            tACCCTGCCGAGCATAACGTCGGTCATTTGTATaa                        <  1:1558765/35‑1 (MQ=255)
            tACCCTGCCGAGCATAACGTCGGTCATTTGTATaa                        <  1:6012735/35‑1 (MQ=255)
             aCCCTGCCGAGCATAACGTCGGgggtttgtttaaa                       >  1:5807797‑M1/1‑22 (MQ=255)
             aCCCTGCCGAGCATAACGTCGGTCATTTGTATaaa                       <  1:136738/35‑1 (MQ=255)
              cccTGCCGAGCATAACGTCGGTCATTTGTATAAAg                      <  1:8622516/35‑1 (MQ=255)
              cccTGCCGAGCATAACGTCGGTCATTTGTATAAAg                      <  1:14256808/35‑1 (MQ=255)
               ccTGCCGAGCATAACGTCGGTCATTTGTATAAAGc                     <  1:16479048/35‑1 (MQ=255)
               ccTGCCGAGCATAACGTCGGTCATTTGTATAAAGc                     <  1:5034983/35‑1 (MQ=255)
               ccTGCCGAGCATAACGTCGGTCATTTGTATAAAGc                     <  1:17481187/35‑1 (MQ=255)
                cTGCCGAGCATAACGTCGGTCATTTGTATAAAGCa                    <  1:3873706/35‑1 (MQ=255)
                cTGCCGAGCATAACGTCGGTCATTTGTATAAAGCa                    <  1:2361175/35‑1 (MQ=255)
                 tGCCGAGCATAACGTCGGTCATTTGTATAAAGCAc                   <  1:7685874/35‑1 (MQ=255)
                 tGCCGAGCATAACGTCGGTCATTTGTATAAAGCAc                   <  1:7772982/35‑1 (MQ=255)
                 tGCCGAGCATAACGTCGGTCATTCGTATAAAGCAc                   <  1:3025645/35‑1 (MQ=255)
                  gCCGAGCATAACGTCGGTCATTTGTATAAAGCAcc                  <  1:1015561/35‑1 (MQ=255)
                  gCCGAGCATAACGTCGGTCATTTGTATAAAGCAcc                  <  1:3900107/35‑1 (MQ=255)
                   ccGAGCATAACGTCGGTCATTTGTATAAAGCACCg                 <  1:1829335/35‑1 (MQ=255)
                   ccGAGCATAACGTCGGTCATTTGTATAAAGCACCg                 <  1:14612145/35‑1 (MQ=255)
                   ccGAGCATAACGTCGGTCATTTGTATAAAGCACCg                 <  1:13304062/35‑1 (MQ=255)
                    cGAGCATAACGTCGGTCATTTGTATAAAGCACCgg                <  1:3337048/35‑1 (MQ=255)
                     gAGCATAACGTCGGTCATTTGTATAAAGCACCGga               <  1:17540629/35‑1 (MQ=255)
                     gAGCATAACGTCGGTCATTTGTATAAAGCACCGga               <  1:16635903/35‑1 (MQ=255)
                       gCATAACGTCGGTCATTTGTATAAAGCACCGgaga             <  1:11567038/35‑1 (MQ=255)
                        cATAACGTCGGTCATTTGTATAAAGCACAGGAGAc            <  1:18281849/35‑1 (MQ=255)
                         aTAACGTCGGTCATTTGTATAAAGCACCGGAGACg           <  1:2034597/35‑1 (MQ=255)
                           aaCGTCGGTCATTTGTATAAAGCACCGGAGACGtt         <  1:535191/35‑1 (MQ=255)
                            aCGTCGGTCATTTGTATAAAGCACCGGAGACGTTg        <  1:14730033/35‑1 (MQ=255)
                            aCGTCGGTCATTTGTATAAAGCACCGGAGACGTTg        <  1:727468/35‑1 (MQ=255)
                             cGTCGGTCATTTGTATAAAGCACCGGAGACGTTGc       <  1:8833344/35‑1 (MQ=255)
                               tCGGTCATTTGTATAAAGCACCGGAGACGTTGCAg     <  1:18098940/35‑1 (MQ=255)
                               tCGGTCATTTGTATAAAGCACCGGAGACGTTGCAg     >  1:5440604/1‑35 (MQ=255)
                                cGGgggtttgtttatttctgcgaggtgcagggcaa    <  1:11869863‑M1/35‑33 (MQ=255)
                                cGGgggtttgtttatttctgcgaggtgcagggcaa    >  1:10203531‑M1/1‑3 (MQ=255)
                                cGGgggtttgtttatttctgcgaggtgcagggcaa    <  1:4557813‑M1/35‑33 (MQ=255)
                                cGGgggtttgtttatttctgcgaggtgcagggcaa    >  1:19998198‑M1/1‑3 (MQ=255)
                                cGGgggtttgtttatttctgcgaggtgcagggcaa    >  1:11350703‑M1/1‑3 (MQ=255)
                                cGGgggtttgtttatttctgcgaggtgcagggcaa    <  1:19610090‑M1/35‑33 (MQ=255)
                                cGGgggtttgtttatttctgcgaggtgcagggcaa    >  1:15057937‑M1/1‑3 (MQ=255)
                                cGGTCATTTGTATAAAGCACCGGAGACGTTGCAGa    >  1:6858823/1‑35 (MQ=255)
                                cGGTCATTTGTATAAAGCACCGGAGACGTTGCAGa    >  1:1813894/1‑35 (MQ=255)
                                 gggggtttgtttatttctgcgaggtgcagggcaat   >  1:14144553‑M1/1‑2 (MQ=255)
                                 gggggtttgtttatttctgcgaggtgcagggcaat   <  1:9627458‑M1/35‑34 (MQ=255)
                                 gggggtttgtttatttctgcgaggtgcagggcaat   >  1:2760637‑M1/1‑2 (MQ=255)
                                 ggTCATTTGTATAAAGCACCGGAGACGTTGCAGaa   <  1:1795672/35‑1 (MQ=255)
                                 ggTCATTTGTATAAAGCACCGGAGACGTTGCAGaa   >  1:14948183/1‑35 (MQ=255)
                                 ggTCATTTGTATAAAGCACCGGAGACGTTGCAGaa   <  1:4105691/35‑1 (MQ=255)
                                 ggTCATTTGTATAAAGCACAGGAGACGTTGCAGaa   <  1:11088533/35‑1 (MQ=255)
                                  ggggtttgtttatttctgcgaggtgcagggcaatt  <  1:3395061‑M1/35‑35 (MQ=255)
                                  ggggtttgtttatttctgcgaggtgcagggcaatt  <  1:7434416‑M1/35‑35 (MQ=255)
                                  ggggtttgtttatttctgcgaggtgcagggcaatt  <  1:5249767‑M1/35‑35 (MQ=255)
                                  ggggtttgtttatttctgcgaggtgcagggcaatt  <  1:19018367‑M1/35‑35 (MQ=255)
                                  ggggtttgtttatttctgcgaggtgcagggcaatt  >  1:18727524‑M1/1‑1 (MQ=255)
                                  ggggtttgtttatttctacgaggtgcagggcaatt  >  1:15312742‑M1/1‑1 (MQ=255)
                                  gTCATTTGTATAAATCACCGGAGACGTTGCAGAAg  >  1:12478498/1‑35 (MQ=255)
                                  gTCATTTGTATAAAGCACCGGAGACGTTGCAGAAg  >  1:16594239/1‑35 (MQ=255)
                                  gTCATTTGTATAAAGCACCGGAGACGTTGCAGAAg  <  1:10510602/35‑1 (MQ=255)
                                  gTCATTTGTATAAAGCACCGGAGAAGTTGCAGAAg  <  1:7216656/35‑1 (MQ=255)
                                  |                                  
CGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAG  >  REL606/2174983‑2175051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.