New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1510513 =81 (0.790)16 (0.210) 4/36 NT 22.7% coding (256/681 nt) narV nitrate reductase 2 (NRZ), gamma subunit
?REL606 4138913 = 48 (0.620)coding (563/918 nt) oxyR DNA‑binding transcriptional dual regulator

ACGCCGCACTGGATGTACGCGTGGTTTTTGCCAGTGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1510552‑1510513
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcagGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG  >  REL606/4138913‑4138946
                                                                          
ACGCCGCACTGGATGTACGCGTGGTTTTTGCCAGT                                         <  1:9430911/35‑1
ACGCCGCACTGGATGTACGCGTGGTTTTTGCCAGT                                         <  1:8011678/35‑1
ACGCCGCACTGGATGTACGCGTGGTTTTTGCCAGT                                         <  1:12529368/35‑1
ACGCCGCACTGGATGTACGCGTGGTTTTTGCCAGT                                         <  1:5980623/35‑1
ACGCCGCACTGGATGTACGCGTGGGTTTTGCCAGT                                         >  1:9244112/1‑35
 CGCCGCACTGGATGTACGCGTGGTTTTTGCCAGTG                                        >  1:17451309/1‑35
  GCCGCACTGGATGTACGCGTGGGTTTTGCCAGTGG                                       >  1:15738474/1‑35
   CCGCACTGGATGTACGCGTGGTTTTTGCCAGTGGC                                      <  1:4020942/35‑1
   CCGCACTGGATGTACGCGTGGTTTTTGCCAGTGGC                                      <  1:13433686/35‑1
   CCGCACTGGATGTACGCGTGGTTTTTGCCAGTGGC                                      <  1:4111008/35‑1
   CCGAACTGGATGTACGCGTGGTTTTTGCCAGTGGC                                      <  1:8027255/35‑1
    CGCACTGGATGTACGCGTGGTTTTTGCCAGTGGCA                                     >  1:16521322/1‑35
    CGCACTGGATGTACGCGTGGTTTTTGCCAGTGGCA                                     <  1:16297615/35‑1
    CGCACTGGATGTACGCGTGGTTTTTGCCAGTGGCA                                     <  1:9996839/35‑1
    CGCAATGGATGTACGCGTGGTTTTTGCCAGTGGCA                                     <  1:18699297/35‑1
        CTGGATGTACGCGTGGTTTTTGCCAGTGGCAGGGG                                 >  1:6992413/1‑35
        CTGGATGTACGCGTGGTTTTTGCCAGTGGCAGGGG                                 >  1:14286753/1‑35
        CTGGATGTACGCGTGGTTTTTGCCAGTGGCAGGGG                                 >  1:14217289/1‑35
         TGGATGTACGCGTGGTTTTTGCCAGTGGCAGGGGg                                >  1:18372490/1‑34
         TGGATGTACGCGTGGTTTTTGCCAGTGGCAGGGGA                                >  1:9157695/1‑35
         TGGATGTACGCGTGGTTTTTGCCAGTGGCAGGGGA                                >  1:13793872/1‑35
          GGATGTACGCGTGGTTTTTGCCAGTGGCAGGGGAA                               >  1:4731753/1‑35
          GGATGTACGCGTGGTTTTTGCCAGTGGCAGGGGAA                               >  1:17728732/1‑35
          GGATGTACGCGTGGTTTTTGCCAGTGGCAGGGAAA                               >  1:155723/1‑35
           GATGTACGCGTGGTTTTTGCCAGTGGCAGGGGAAA                              >  1:15532137/1‑35
            ATGTACGCGTGGTTTTTGCCAGTGGCAGGGGGAAA                             >  1:15076180/1‑35
            ATGTACGCGTGGTTTTTGCCAGTGGCAGGGGGAAA                             >  1:18815260/1‑35
            ATGTACGCGTGGTTTTTGCCAGTGGCAGGGGAAca                             >  1:4848659/1‑33
            ATGTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAA                             >  1:16175088/1‑35
            ATGTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAA                             >  1:5168016/1‑35
             TGTACGCGTGGTTTTTGCCAGTGGCAGGGGAACAA                            >  1:6488679/1‑35
             TGTACGCGTGGTTTTTGCCAGTGGCAGGGGAACAA                            >  1:10833670/1‑35
             TGTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAA                            >  1:4055017/1‑35
             TGTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAA                            >  1:15300945/1‑35
              GTACGCGTGGTTTTTGCCAGTGGCAGGGGAACAAa                           >  1:9065543/1‑34
              GTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAAa                           >  1:18051292/1‑34
              GTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAAC                           >  1:3218785/1‑35
              GTACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAAC                           >  1:18133548/1‑35
               TACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAAat                          >  1:19363183/1‑33
               TACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAAat                          >  1:13470823/1‑33
               TACGCGTGGTTTTTGCCAGTGGCAGGGGAAAAAac                          >  1:16273286/1‑33
                                  TGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGT       >  1:2605623/1‑35
                                  TGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGT       >  1:17391189/1‑35
                                   GGCAGTGGAAAAACTGCTGATGCTGGAAGATGGTC      >  1:14774237/1‑35
                                   GGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTC      >  1:8323569/1‑35
                                   GGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTC      >  1:8532936/1‑35
                                   GGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTC      <  1:6353235/35‑1
                                   GGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTC      <  1:15615304/35‑1
                                   GGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTC      <  1:15790327/35‑1
                                    GCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCA     <  1:12415044/35‑1
                                     CAGGGGAAAAACTGCTGATGCTGGAAGATGGTCAC    >  1:8678283/1‑35
                                     CAGGGGAAAAACTGCTGATGCTGGAAGATGGTCAC    <  1:14770637/35‑1
                                     CAGGGGAAAAACTGCTGATGCTGGAAGATGGTCAC    <  1:3038203/35‑1
                                     CAGGGGAAAAACTGCTGATGCTGGAAGATGGTCAC    >  1:11399177/1‑35
                                      AGGGGAAAACCTGCTGATGCTGGAAGATGGTCACT   <  1:19831934/35‑1
                                      AGGGGAAAAACTGCTGATGCTGGAAGATGGTGACT   <  1:13699389/35‑1
                                      AGGGGAAAAACTGCTGATGCTGGAAGATGGTCACT   >  1:5665835/1‑35
                                      AGGGGAAAAACTGCTGATGCTGGAAGATGGTCACT   >  1:5554757/1‑35
                                      AGGGGAAAAACTGCTGATGCTGGAAGATGGTCACT   >  1:4030228/1‑35
                                      AGGGGAAAAACTGCTGATGCTGGAAGATGGTCACT   >  1:10045599/1‑35
                                       GGGGAAAACCTGCTGATGCTGGAAGATGGTCACTG  <  1:7880410/35‑1
                                       GGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG  >  1:18648749/1‑35
                                       GGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG  <  1:12228879/35‑1
                                                                          
ACGCCGCACTGGATGTACGCGTGGTTTTTGCCAGTGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1510552‑1510513
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcagGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG  >  REL606/4138913‑4138946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.