New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2312280 = | 75 (0.730) | 5 (0.050) | 3/44 | NT | 9.1% | intergenic (‑147/‑143) | ais/yfbE | hypothetical protein/uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
? | REL606 | = 4042610 | 31 (0.330) | intergenic (‑57/+10) | yshA/yihO | predicted outer membrane porin L/predited transporter |
TAGACGTAAATATTGAAATTTTTATATTTTTTCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2312315‑2312280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCC < REL606/4042610‑4042577 TAGACGTAAATATTGAAATTTTTATATTTTTTCTT < 1:4853201/35‑1 TTTTTATATTTTTTTTTAGCCGCTATTTCCATCCT < 1:2680590/35‑1 tTTTTTTTTTAGCCGCTATTTCCATCCTGGTGGGT < 1:8886485/34‑1 TTTTTTTTTAGCCGCTATTTCCATCCTGGTGGGTG < 1:7749188/35‑1 TTTTTTTTTAGCCGCTATTTCCATCCTGGTGGGTG < 1:17227563/35‑1 TTTTTTTTAGCCGCTATTTCCATCCTGGTGGGTGG < 1:13869675/35‑1 tTTAGCCGCTATTTCCATCCTGGTGGGTGGCGGCC < 1:14195482/34‑1 tTTAGCCGCTATTTCCATCCTGGTGGGTGGCGGCC < 1:1902604/34‑1 TTAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCT < 1:9857231/35‑1 TTAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCT < 1:15372953/35‑1 TTAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCT < 1:13918176/35‑1 TAGCCGCTATTTCCATCCTGGTGGGTGGCGGGCTC > 1:3580627/1‑35 TAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTC < 1:17172086/35‑1 TAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTC < 1:772473/35‑1 TAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTC > 1:8122389/1‑35 TAGCCGCTATTTCCATCCTGGTGGGTGGCGGCATC < 1:3986566/35‑1 TAGCCGCTATTTCCATACTGGTGGGTGGCGGCCTC < 1:4657701/35‑1 AGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCC < 1:19414125/35‑1 AGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCC > 1:6664507/1‑35 AGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCC < 1:7491178/35‑1 AGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCC > 1:14129374/1‑35 TAGACGTAAATATTGAAATTTTTATATTTTTTCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2312315‑2312280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCC < REL606/4042610‑4042577 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |