Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,249,829 | C→A | 7.2% | G474C (GGT→TGT) | infB ← | translation initiation factor IF‑2 |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,249,829 | 0 | C→A | 7.2% | 4.1 ‑0.4 ‑0.0 | 81 | G474C (GGT→TGT) | infB | translation initiation factor IF‑2 |
Reads supporting (aligned to +/- strand): new base (3/3): ref base (47/28): total (50/31) | ||||||||||
Fisher's exact test strand distribution p-value = 6.70e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.82e-01 |
Only 100 of 123 total aligned reads displayed.
TGCTGGATTGCTTCGATGGTCTGCGGCATCACACCGTCGTCGGCAGCAACAACCAGGACTACGATGTCC > REL606/3249795‑3249863 | tGCTGGATTGCTTCGATGGTCTGCGGCATCACAcc < 1:8367710/35‑1 (MQ=255) tGCTGGATTGCTTCGATGGTCTGCGGCATCACAcc > 1:8232126/1‑35 (MQ=255) tGCTGGATTGCTTCGATGGTCTGCGGCATCACAcc > 1:3951318/1‑35 (MQ=255) tGCTGGATTGCTTCGATGGTCTGCGGCATCACAcc < 1:2551021/35‑1 (MQ=255) tGCTGGATTGCTTCGATGGTCTGCGGCATCACAcc < 1:18000468/35‑1 (MQ=255) tGCTGGATTGCTTCGATGGTCTGCGGCATCACAcc < 1:12858188/35‑1 (MQ=255) gCTGGATTGCTTCGATGGTCTGCGGCATCACACcg > 1:3899032/1‑35 (MQ=255) gCTGGATTGCTTCGATGGTCTGCGGCATCACACcg < 1:3514683/35‑1 (MQ=255) gCTGGATTGCTTCGATGGTCTGCGGCATCACACcg < 1:348946/35‑1 (MQ=255) cTGGATTGCTTCGATGGTCTGCGGCATCACACcgt < 1:3322814/35‑1 (MQ=255) tgtaTTTCTTCGGTGGTCTTCGGCATCACACcgtc < 1:10088451/32‑1 (MQ=19) tGGATTGCTTCGATGGTCTGCGGGATCACACcgtc < 1:6803216/35‑1 (MQ=255) tGGATTGCTTCGATGGTCTGCGGCATCACACcgtc > 1:13280100/1‑35 (MQ=255) tGGATTGCTTCGATGGTCTGCGGCATCACACcgtc > 1:2354392/1‑35 (MQ=255) tGGATTGCTTCGATGGTCTGCGGCATCACACcgtc < 1:6798967/35‑1 (MQ=255) tGGATTGCTTCGATGGTCAGCGGCATCACACcgac > 1:14456946/1‑33 (MQ=38) ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg > 1:15405935/1‑35 (MQ=255) ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg > 1:5420012/1‑35 (MQ=255) ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg > 1:1223105/1‑35 (MQ=255) ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg > 1:17503994/1‑35 (MQ=255) ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg > 1:2326451/1‑35 (MQ=255) ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg > 1:7863428/1‑35 (MQ=255) ggATTGCTTCGATGGTCTGCGGCATCACACcgtcg < 1:13730552/35‑1 (MQ=255) gATTGCTTCGATGGTCTGCGGCATCACACcgtcgt > 1:18408335/1‑35 (MQ=255) gATTGCTTCGATGGTCTGCGGCATCACACcgtcgt > 1:16097995/1‑35 (MQ=255) aTTGCTTCGATGGTCTGCGGCATCACACCgtcgtc > 1:15175555/1‑35 (MQ=255) aTTGCTTCGATGGTCTGCGGCATCACACCgtcgtc < 1:13905576/35‑1 (MQ=255) aTTGCTTCGATGGTCTGCGGCATCACACCgtcgtc < 1:15264905/35‑1 (MQ=255) aTTGCTTCGATGGTCTGCGGCATCACACCgtcgtc > 1:10726484/1‑35 (MQ=255) aTTGCTTCGATGGTCTGCGGCATCACACCgtcgtc < 1:10153529/35‑1 (MQ=255) aTTGCTTCGATGGTCTGCGGCATCACACCgtcgtc > 1:9403432/1‑35 (MQ=255) aTTGCTTCGATGGTCTGCGGCATCACACAgtcgtc < 1:197043/35‑1 (MQ=255) ttGCTTCGATGGTCTGCGGCATCACACCGtcgtcg < 1:5899318/35‑1 (MQ=255) ttGCTTCGATGGTCTGCGGCATCACACCGtcgtcg < 1:5869073/35‑1 (MQ=255) ttGCTTCGATGGTCTGCGGCATCACACCGtcgtcg < 1:18115729/35‑1 (MQ=255) ttGCTTCGATGGTCTGCGGCATCACACAGtcgtcg > 1:18438479/1‑35 (MQ=255) ttGCTCCGATGGTCTGCGGCATCACACCGtcgtcg < 1:7682180/35‑1 (MQ=255) tGCTTCGATGGTCTGCTGCATCACACCGTCGTCgg > 1:3851188/1‑35 (MQ=255) tGCTTCGATGGTCTGCTGCATCACACCGTCGTCgg > 1:18262928/1‑35 (MQ=255) tGCTTCGATGGTCTGCGGCATCACACCGTCGTCgg < 1:18479950/35‑1 (MQ=255) tGCTTCGATGGTCTGCGGCATCACACCGTCGTCgg < 1:7918496/35‑1 (MQ=255) tGCTTCGATGGTCTGCGGCATCACACCGTCGTCgg < 1:8150663/35‑1 (MQ=255) tGCTTCGATGGTCTGCGGCATCACACCGTCGCCgg > 1:1972994/1‑35 (MQ=255) gCTTCGATGGTCTGCGGCATCACACCGTCGTCGgc < 1:15497494/35‑1 (MQ=255) gCTTCGATGGTCTGCGGCATCACACCGTCGTCGgc < 1:13076525/35‑1 (MQ=255) cTTCGATGGTCTGCGGCATCACACCGTCGTCGgca < 1:4736926/35‑1 (MQ=255) cTTCGATGGTCTGCGGCATCACACCGTCGTCGgca < 1:12012831/35‑1 (MQ=255) cTTCGATGGTCTGCGGCATCACACCGTCGTCGgca < 1:8304982/35‑1 (MQ=255) cTTCGATGGTCTGCGGCATCACACCGTCGTCGgca > 1:17159823/1‑35 (MQ=255) ttCGATGGTCTGCGGCATCACACCGTCGTCGgcag > 1:11325482/1‑35 (MQ=255) ttCGATGGTCTGCGGCATCACACCGTCGTCGgcag < 1:12851458/35‑1 (MQ=255) ttCGATGGTCTGCGGCATCACACCGTCGTCGgcag > 1:16484226/1‑35 (MQ=255) ttCGATGGTCTGCGGCATCACACCGTCGTCGgcag > 1:10722160/1‑35 (MQ=255) ttCGATGGTCTGCGGCATCACACCCTCGTCGgcag < 1:19140730/35‑1 (MQ=255) tCGATGGTCTGCGGCATCACACCGTCGTCGgcagc < 1:7336902/35‑1 (MQ=255) tCGATGGTCTGCGGCATCACACCGTCGTCGgcagc < 1:8380823/35‑1 (MQ=255) tCGATGGTCTGCGGCATCACACCGTCGTCGgcagc < 1:9446865/35‑1 (MQ=255) tCGATGGTCTGCGGCATCACACCGTCGTCGgcagc > 1:14726589/1‑35 (MQ=255) tCGATGGTCTGCGGCATCACACCGTCGTCGgcagc > 1:12086959/1‑35 (MQ=255) cGATGGTCTGCGGCATCACACCGTCGTCGgcagca < 1:5660629/35‑1 (MQ=255) cGATGGTCTGCGGCATCACACAGTCGTCGgcagca < 1:16022106/35‑1 (MQ=255) gATGGTCTGCGGCATCACACCGTCGTCGGCAGcaa > 1:10560343/1‑35 (MQ=255) gATGGTCTGCGGCATCACACCGTCGTCGGCAGcaa > 1:1615371/1‑35 (MQ=255) gATGGTCTGCGGCATCACACCGTCGTCGGCAGcaa > 1:11181959/1‑35 (MQ=255) gATGGTCTGCGGCATCACACCGTCGTCGGCAGcaa > 1:19239244/1‑35 (MQ=255) gATGGTCTGCGGCATCACACAGTCGTCGGCAGcaa > 1:20357913/1‑35 (MQ=255) aTGGTCTGCGGCATCACACCGTCGTCGGCAGcaac > 1:12732667/1‑35 (MQ=255) aTGGTCTGCGGCATCACACCGTCGTCGGCAGcaac > 1:1335356/1‑35 (MQ=255) tGGTCTGCGGCATCACACCGTCGTCGGCAGcaaca > 1:8932869/1‑35 (MQ=255) tGGTCTGCGGCATCACACCGTCGTCGGCAGcaaca > 1:19987134/1‑35 (MQ=255) ggTCTGCGGCATCACACCGTCGTCTGCAGcaacaa > 1:10762603/1‑35 (MQ=255) ggTCTGCGGCATCACACCGTCGTCGGCAGcaacaa > 1:10979404/1‑35 (MQ=255) ggTCTGCGGCATCACACCGTCGTCGGCAGcaacaa < 1:12076956/35‑1 (MQ=255) ggTCTGCGGCATCACACCGTCGTCGGCAGcaacaa > 1:13654894/1‑35 (MQ=255) ggTCTGCGGCATCACACCGTCGTCGGCAGcaacaa < 1:13693574/35‑1 (MQ=255) ggTCTGCGGCATCACACCGTCGTCGGCAGcaacaa < 1:19038870/35‑1 (MQ=255) ggTCTCCGGCATCCCACCGTCGTCGGCAGcaacaa < 1:12560665/35‑1 (MQ=37) gTCTGCGGCATCACACCGTCGTCGGCAGCaaaaac > 1:14255463/1‑35 (MQ=255) cTGCGGCATCACACCGTCGTCGGCAGGAACAAACa > 1:16713056/1‑35 (MQ=37) gCGGCATCACACCGTCGTCGGCAGCAACAACCAgg > 1:17205538/1‑35 (MQ=255) ggCATCACACCGTCGTCGGCAGCAACAACCAGGAc > 1:13442689/1‑35 (MQ=255) ggCATCACACCGTCGTCGGCAGCAACAACCAGGAc > 1:14944001/1‑35 (MQ=255) ggCATCACACCGTCGTCGGCAGCAACAACCAGGAc > 1:10880857/1‑35 (MQ=255) gCATCACACCGTCGTCGGCAGCAACAACCAGGACt > 1:8566486/1‑35 (MQ=255) gCATCACACCGTCGTCGGCAGCAACAACCAGGACt > 1:17611473/1‑35 (MQ=255) aTCACACCGTCGTCGGCAGCAACAACCAGGACTAc > 1:10240379/1‑35 (MQ=255) cacaCCGTCGTCGGCAGCAACAACCAGGACTActa > 1:6371533/1‑33 (MQ=255) cacaCCGTCGTCGGCAGCAACAACCAGGACTACGa > 1:14197177/1‑35 (MQ=255) cacaCCGTCGTCGGCAGCAACAACCAGGACTACGa > 1:11329752/1‑35 (MQ=255) acacCGTCGTCGGCAGCAACAACCAGGACTACgct > 1:5729831/1‑33 (MQ=255) acacCGTCGTCGGCAGCAACAACCAGGACTACGAt > 1:10421230/1‑35 (MQ=255) cacCGTCGTCTGCAGCAACAACCAGGACTACGATg > 1:16879111/1‑35 (MQ=255) cacCGTCGTCGGCAGCAACAACCAGGACCACCATg > 1:2435707/1‑35 (MQ=37) cacCGTCGTCGGCAGCAAAAACCAGGACTCCGATg > 1:2030970/1‑35 (MQ=37) cacAGTCGTCGGCAGCAACAACCAGGACTACGATg > 1:1890805/1‑35 (MQ=255) ccGTCGTCGGCAGCAACAACCAGGACTACGATGTc < 1:3344332/35‑1 (MQ=255) ccGTCGTCGGCAGCAACAACCAGGACTACGATGTc > 1:13928525/1‑35 (MQ=255) ccGTCGTCGGCAGCAACAACAAGGACTACGATGTc < 1:1806767/35‑1 (MQ=255) cgtcgtCGGCAGCAACAACCAGGACTACGATGTcc > 1:3720909/1‑35 (MQ=255) cgtcgtCGGCAGCAACAACCAGGACTACGATGTcc > 1:11329061/1‑35 (MQ=255) | TGCTGGATTGCTTCGATGGTCTGCGGCATCACACCGTCGTCGGCAGCAACAACCAGGACTACGATGTCC > REL606/3249795‑3249863 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |