Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 3,894,997 Δ6,460 bp 100% IS150‑mediated rbsD[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3893577–3894996 3901456 6461–7880 51 [46] [0] 180 insJ‑5–[yieO] insJ‑5, insK‑5, rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3652533NA (NA)95 (0.960) 38/46 NT 100% noncoding (1443/1443 nt) IS150 repeat region
?REL606 3901457 = 0 (0.000)coding (963/1428 nt) yieO predicted multidrug or homocysteine efflux system

Only 100 of 171 total aligned reads displayed.

GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3652500‑3652533
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGACTTGGGTAACCATCGATTTTGCAATAATGGAA  >  REL606/3901457‑3901490
                                                                    
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                   >  1:9849515/1‑35
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                   <  1:9553650/35‑1
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                   >  1:572453/1‑35
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                   >  1:4031172/1‑35
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                   <  1:1992758/35‑1
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                   <  1:18412951/35‑1
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                   >  1:16530983/1‑35
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                   <  1:13679283/35‑1
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                   >  1:13023974/1‑35
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                   <  1:12785453/35‑1
 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGg                                  >  1:20022141/1‑34
 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGc                                  >  1:16015204/1‑34
 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGc                                  >  1:13082010/1‑34
 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGc                                  >  1:10690846/1‑34
 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGA                                  <  1:2492371/35‑1
 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGA                                  <  1:3276690/35‑1
  GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGAg                                 <  1:2059442/35‑2
  GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGAC                                 <  1:11202547/35‑1
   TTTAACTGTCCAACTTTTTGGGGTCAGTACAGgat                                >  1:5327745/1‑32
   TTTAACTGTCCAACTTTTTGGGGTCAGTACAGCCT                                >  1:2822628/1‑35
   TTTAACTGTCCAACTTTTTGGGGTCAGTACAGAgt                                <  1:18724318/35‑3
   TTTAACTGTCCAACTTTTTGGGGTCAGTACAGAgt                                >  1:185481/1‑33
   TTTAACTGTCCAACTTTTTGGGGTCAGTACAGAgt                                >  1:10829043/1‑33
   TTTAACTGTCCAACTTTTTGGGGTCAGTACAGAgt                                >  1:19491014/1‑33
    TTAACTGTCCAACTTTTTGGGGTCAGTACAGAtcc                               <  1:10681568/35‑4
    TTAACTGTCCAACTTTTTGGGGTCAGTACAGAgta                               >  1:16682999/1‑32
    TTAACTGTCCAACTTTTTGGGGTCAGTACAGAgta                               >  1:16104655/1‑32
    TTAACTGTCCAACTTTTTGGGGTCAGTACAGACTg                               >  1:3557506/1‑34
    TTAACTGTCCAACTTTTTGGGGTCAGTACAGACTT                               <  1:17260166/35‑1
    TTAACTGTCCAACTTTTTGGGGTCAGTACAGACTT                               <  1:18240773/35‑1
    TTAACTGTCCAACTTTTTGGGGTCAGTACAGACTT                               <  1:15502902/35‑1
    TTAACTGTCCAACTTTTTGGGGTCAGTACAGACTT                               >  1:12777707/1‑35
       ACTGTCCAACTTTTTGGGGTCAGTACAGACTTGGN                            <  1:16678628/35‑1
       ACTGTCCAACTTTTTGGGGTCAGTACAGACTTGGG                            >  1:11350951/1‑35
       ACTGTCCAACTTTTTGGGGTCAGTACAGACTTGGG                            >  1:743393/1‑35
       ACTGTCCAACTTTTTCGGGTCAGTACAGACTTGGG                            >  1:612560/1‑35
        CTGTCCAACTTTTTGGGGTCAGTACAGACTTGGGT                           <  1:14637174/35‑1
        CTGTCCAACTTTTTGGGGTCAGTACAGACTTGGGT                           <  1:2327384/35‑1
         TGTCCAACTTTTTGGGGTCAGTACAGACTTGGGTA                          <  1:20302536/35‑1
         TGTCCAACTTTTTGGGGTCAGTACAGACTTGGGTA                          >  1:11859688/1‑35
          GTCCAACTTTTTGGGGTCAGTACAGACTTGGGTAA                         <  1:2035601/35‑1
          GTCCAACTTTTTGGGGTCAGTACAGACTTGGGTAA                         <  1:7930162/35‑1
          GTCCAACTTTTTGGGGTCAGTACAGACTTGGGTAA                         >  1:1196079/1‑35
           TCCAACTTTTTGGGGTCAGTACAGACTTGGGTAAC                        >  1:1016137/1‑35
           TCCAACTTTTTGGGGTCAGTACAGACTTGGGTAAC                        <  1:4368180/35‑1
           TCCAACTTTTTGGGGTCAGTACAGACTTGGGTAAC                        <  1:10528609/35‑1
           TCCAACTTTTTGGGGTCAGTACAGACTTGGGTAAC                        <  1:3679766/35‑1
           TCCAACTTTTTGGGGTCAGTACAGACTTGGGTAAC                        >  1:16213340/1‑35
             CAACTTTTTTGGGTCAGTACAGACTTGGGTAACCA                      >  1:8766938/1‑35
             CAACTTTTTGGGGTCAGTACAGACTTGGGTAACCA                      >  1:10931319/1‑35
             CAACTTTTTGGGGTCAGTACAGACTTGGGTAACCA                      >  1:15599971/1‑35
              AACTTTTTGGGGTCAGTACAGACTTGGGTAACCAT                     >  1:2853941/1‑35
               ACTTTTTGGGGTCAGTACAGACTTGGGTAACCATC                    <  1:18210954/35‑1
               ACTTTTTGGGGTCAGTACAGACTTGGGTAACCATC                    <  1:9025197/35‑1
                CTTTTTGGGGTCAGTACAGACTTGGGTAACCATCG                   <  1:14983914/35‑1
                CTTTTTGGGGTCAGTACAGACTTGGGTAACCATCG                   <  1:7598149/35‑1
                CTTTTTGGGGTCAGTACAGACTTGGGTAACCATCG                   <  1:13174939/35‑1
                CTTTTTGGGGTCAGTACAGACTTGGGTAACCATCG                   <  1:11501802/35‑1
                 TTTTTGGGGTCAGTACAGACTTGGGTAACCATCGA                  >  1:14810088/1‑35
                 TTTTTGGGGTCAGTACAGACTTGGGTAACCATCGA                  >  1:8475019/1‑35
                 TTTTTGGGGTCAGTACAGACTTGGGTAACCATCGA                  <  1:13473251/35‑1
                  TTTTGGGGTCAGTACAGACTTGGGTAACCATCGAT                 <  1:18509776/35‑1
                  TTTTGGGGTCAGTACAGACTTGGGTAACCATCGAT                 <  1:704330/35‑1
                  TTTGGGGGTCAGTACAGACTTGGGTAACCATCGAT                 <  1:11134821/35‑1
                   TTTGGGGTCAGTACAGACTTGGGTAACCATCGATT                >  1:9456877/1‑35
                    TTGGGGTCAGTACAGACTTGGGTAACCATCGATTT               <  1:16510729/35‑1
                    TTGGGGTCAGTACAGACTTGGGTAACCATCGATTT               <  1:14410248/35‑1
                     TGGGGTCAGTACAGACTTGGGTAACCATCGATTTT              >  1:10055194/1‑35
                     TGGGGTCAGTACAGACTTGGGTAACCATCGATTTT              <  1:19239536/35‑1
                      GGGGTCAGTACAGACTTGGGTAACCATCGATTTTG             <  1:6854847/35‑1
                      GGGGTCAGTACAGACTTGGGTAACCATCGATTTTG             <  1:6810547/35‑1
                      GGGGTCAGTACAGACTTGGGTAACCATCGATTTTG             <  1:5488022/35‑1
                      GGGGTCAGTACAGACTTGGGTAACCATCGATTTTG             <  1:12142496/35‑1
                       GGGTCAGTACAGACTTGGGTAACCATCGATTTTGC            <  1:9132018/35‑1
                       GGGTCAGTACAGACTTGGGTAACCATCGATTTTGC            <  1:1756292/35‑1
                       GGGTCAGTACAGACTTGGGTAACCATCGATTTTGC            <  1:13885134/35‑1
                         GTCAGTACAGACTTGGGTAACCATCGATTTTGCAA          >  1:4345834/1‑35
                         GTCAGTACAGACTTGGGTAACCATCGATTTTGCAA          <  1:19316722/35‑1
                         GTCAGTACAGACTTGGGTAACCATCGATTTTGCAA          <  1:14433775/35‑1
                         GTCAGTACAGACTTGGGTAACCATCGATTTTGCAA          >  1:6523920/1‑35
                         GTCAGTACAGACTTGGGTAACCATCGATTTTGCAA          <  1:8569431/35‑1
                         GTCAGTACAGACTTGGGTAACCATCGATTTTGCAA          >  1:6927628/1‑35
                         GTCAGTACAGACTTGGGGAACCATCGATTTTGCAA          >  1:19752327/1‑35
                          TCAGTACAGACTTGGGTAACCATCGATTTTGCAAT         >  1:19319158/1‑35
                          TCAGTACAGACTTGGGTAACCATCGATTTTGCAAT         >  1:12329930/1‑35
                          TCAGTACAGACTTGGGTAACCATCGATTTTGAAAT         <  1:13969996/35‑1
                           CAGTACAGACTTGTGTAACCATCGATTTTGCAATA        >  1:2907459/1‑35
                           CAGTACAGACTTGGGTAACCATCGATTTTGCAATA        <  1:937952/35‑1
                            AGTACAGACTTGGGTAACCATCGATTTTGCAATAA       >  1:17099102/1‑35
                            AGTACAGACTTGGGTAACCATCGATTTTGCAATAA       >  1:7896792/1‑35
                            AGTACAGACTTGGGTAACCATCGATTTTGCAATAA       <  1:2009210/35‑1
                             GTACAGACTTGGGTAACCATCGATTTTGCAATAAT      <  1:11568326/35‑1
                             GTACAGACTTGGGTAACCATCGATTTTGCAATAAT      <  1:7703147/35‑1
                              TACAGACTTGGGTAACCATTGATTTTGCAATAATG     >  1:14182493/1‑35
                               ACAGACTTGGGTAACCATCGATTTTGCAATAATGG    >  1:236424/1‑35
                                CAGACTTGGGTAACCATCGATTTTGCAATAATGGA   <  1:14544597/35‑1
                                CAGACTTGGGTAACCATCGATTTTGCAATAATGGA   <  1:15021309/35‑1
                                CAGACTTGGGTAACCATCGATTTTGCAATAATGGA   <  1:16910189/35‑1
                                CAGACTTGCGTAACCATCGATTTTGCAATAATGGA   >  1:12596981/1‑35
                                CAGACTTGCGTAACCATCGATTTTGCAATAATGGA   >  1:18052006/1‑35
                                                                    
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3652500‑3652533
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGACTTGGGTAACCATCGATTTTGCAATAATGGAA  >  REL606/3901457‑3901490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.