New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2583271 | NA (NA) | 32 (0.530) | 3/28 | NT | 49.9% | intergenic (‑441/+11) | iscR/yfhQ | DNA‑binding transcriptional repressor/predicted methyltransferase |
? | REL606 | = 3686161 | 55 (0.540) | coding (401/741 nt) | yiaT | hypothetical protein |
GCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATT > REL606/2583253‑2583305 | gCATTCCGCGTCGCATCAGGCAACGGCTGTTATTc < 1:4095101/35‑1 (MQ=255) gCATTCCGCGTCGCATCAGGCAACGGCTGTTATTc < 1:13013891/35‑1 (MQ=255) gCATTACGCGTCGCATCAGGCAACGGCTGTTATTc < 1:18623432/35‑1 (MQ=255) cATTACGCGTCGCATCAGGCAACGGCTGTTATTCg < 1:18734152/35‑1 (MQ=255) cATTACGCGTCGCATCAGGCAACAGCTGTTATTCg > 1:434759/1‑35 (MQ=255) ccgcgTCGCATCAGGCAACGGCTGTTATTCGGCCt < 1:16579752/34‑1 (MQ=255) cgcgTCGCATCAGGCAACGGCTGTTATTCGGCCtt < 1:5334701/35‑1 (MQ=255) cgcgTCGCAGCGGGCACCGGCTGTTATTCGGCCtt < 1:3216377/35‑1 (MQ=25) gcgTCGCATCAGGCACCGGCTGTTATTCGGCCTTg < 1:532136/35‑1 (MQ=255) gcgTCGCATCAGGCACCGGCTGTTATTCGGCCTTg < 1:12017351/35‑1 (MQ=255) gcgTCGCATCAGGCACCGGCTGTTATTCGGCCTTg < 1:5911383/35‑1 (MQ=255) gcgTCGCATCAGGCAACGGCTGTTATTCGGCCTTg < 1:10287183/35‑1 (MQ=255) cgTCGCATCAGGCAACGGCTGTTATTCGGCCTTGt < 1:1651965/35‑1 (MQ=255) cgTCGCATCAGGCAACGGCTGTTATTCGGCCTTGt < 1:11207719/35‑1 (MQ=255) cgTCGCAACGGGCACCGGCTGTTATTCGGCCTTGt < 1:20178248/35‑1 (MQ=25) gTCGCATCAGGCAACGGCTGTTATTCGGCCTTGtt < 1:3037436/35‑1 (MQ=255) tCGCATCAGGCACCGGCTGTTATTCGGCCTTGTTa < 1:6529200/35‑1 (MQ=255) tCGCATCAGGCACCGGCTGTTATTCGGCCTTGTTa < 1:16822470/35‑1 (MQ=255) cGCATCGGGCAACGGCTGTTATTCGGCCTTGTTAc < 1:4649211/35‑1 (MQ=255) cGCATCGGGCAACGGCTGTTATTCGGCCTTGTTAc < 1:11606113/35‑1 (MQ=255) cGCATCAGGCACCGGCTGTTATTCGGCCTTGTTAc < 1:17547933/35‑1 (MQ=255) cGCATCAGGCACCGGCTGTTATTCGGCCTTGTTAc < 1:4335041/35‑1 (MQ=255) cGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc < 1:16105718/35‑1 (MQ=255) cGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc < 1:15850060/35‑1 (MQ=255) gCATCAGGCACCGGCTGTTATTCGGCCTTGTTAcc < 1:2637202/35‑1 (MQ=255) gCATCAGGCACCGGCTGTTATTCGGCCTTGTTAcc < 1:16035348/35‑1 (MQ=255) gCATCAGGCACCGGCTGTTATTCGGCCTTGTTAcc < 1:4971462/35‑1 (MQ=255) gCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc < 1:15117135/35‑1 (MQ=255) gCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc < 1:13671508/35‑1 (MQ=255) gCACCAGGCACCGGCTGTTATTCGGCCTTGTTAcc < 1:4324402/35‑1 (MQ=37) cATCAGGCAACGGCTGTTATTCGGCCTTGTTACCt < 1:18173289/35‑1 (MQ=255) cATCAGGCAACGGCTGTTATTCGGCCTTGTTACCt < 1:6436923/35‑1 (MQ=255) cATCAGCCACCGGCTGTTATTCGGCCTTGTTACCt < 1:9195406/35‑1 (MQ=37) aTCAGGCAACGGCTGTTATTCGGCCTTGTTACCtt < 1:10791380/35‑1 (MQ=255) aTCAGCCAACGGCTGTTATTCGGCCTTGTTACCtt < 1:8408600/35‑1 (MQ=255) tcgggCAACGGCTGTTATTCGGCCTTGTTACCttt < 1:7675702/32‑1 (MQ=255) tCAGGCACCGGCTGTTATTCGGCCTTGTTACCttt < 1:4547686/35‑1 (MQ=255) tCAGGCACCGGCTGTTATTCGGCCTTGTTACCttt < 1:2736447/35‑1 (MQ=255) tCAGGCACCGGCTGTTATTCGGCCTTGTTACCttt < 1:10900424/35‑1 (MQ=255) tCAGGCAACGGCTGTTATTCGGCCTTGTTACCttt < 1:3162351/35‑1 (MQ=255) tCAGGCAACGGCTGTTATTCGGCCTTGTTACCttt < 1:7916231/35‑1 (MQ=255) tCAGGCAACGGCTGTTATTCGGCCTTGTTACCttt < 1:15720314/35‑1 (MQ=255) cAGGCACCGGCTGTTATTCGGCCTTGTTACCTTTa < 1:3107534/35‑1 (MQ=255) cAGGCACCGGCTGTTATTCGGCCTTGTTACCTTTa < 1:6666522/35‑1 (MQ=255) cAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa < 1:3903120/35‑1 (MQ=255) cAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa < 1:8823789/35‑1 (MQ=255) cAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa < 1:9327446/35‑1 (MQ=255) aGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAt < 1:2397006/35‑1 (MQ=255) ggCAACGGCTGTTATTCGGCCTTGTTACCTTTAtt < 1:17414465/35‑1 (MQ=255) | GCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATT > REL606/2583253‑2583305 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |