New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1661078 = | 57 (0.550) | 10 (0.120) | 4/40 | NT | 15.8% | coding (1002/1302 nt) | rstB | sensory histidine kinase in two‑component regulatory system with RstA |
? | REL606 | = 3625456 | 59 (0.690) | pseudogene (7/738 nt) | yhjQ | b3534; cell division protein (chromosome partitioning ATPase) |
CCGACAGTAGCAGGCTGGTTTCAACCGTTGAATGGCAG‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1661115‑1661078 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGGGGGCGGGGA < REL606/3625456‑3625445 CCGACAGTAGCAGGCTGGTTTCAACCGTTGAATGG < 1:12173529/35‑1 CCGACAGTAGCAGGCTGGTTTCAACCGTTGAATGG > 1:18633453/1‑35 CGACAGTAGCAGGCTTGTTTCAACCGTTGAATGGC > 1:258731/1‑35 CGACAGTAGCAGGCTGGTTTCAACCGTTGAATGGC > 1:1753879/1‑35 GACAGTAGCATGCTGGTTTCAACCGTTGAATGGCA > 1:576126/1‑35 GACAGTAGCAGGCTTGTTTCAACCGTTGAATGGCA > 1:1640734/1‑35 GACAGTAGCAGGCTGGTTTCAACCGTTGAATGGCA > 1:4648859/1‑35 GACAGTAGCAGGCTGGTTTCAACCGTTGAATGGCA < 1:4095948/35‑1 GACAGTAGCAGGCTGGTTTCAACCGTTGAATGGCA > 1:3496051/1‑35 GACAGTAGCAGGCTGGTTTCAACCGTTGAATGGCA < 1:17953481/35‑1 GACAGTAGCAGGCTGGTTTCAACCGTTGAATGGCA < 1:8203768/35‑1 GACAGTAGCAGGCTGGTTTCAACCGTTGAATGGCA < 1:15133674/35‑1 GACAGTAGCAGGCTGGTTTCAACCGTTGAATGGCA < 1:14774035/35‑1 GACAGTAGCAGGCTGGTTTCAACCGTTGAATGGCA > 1:8297455/1‑35 GACAGTAGCAGGCTGGTTTCAACCGTTGAATGGCA < 1:12977866/35‑1 ACAGTAGCAGGCTGGTTTCAACCGTTGAATGGCAG < 1:7832799/35‑1 CAGTAGCAGGCTTGTTTCAACCGTTGAATGGCAGG > 1:5768226/1‑35 CAGTAGCAGGCTGGTTTCAACCGTTGAATGGCAGG > 1:20428485/1‑35 CAGTAGCAGGCTGGTTTCAACCGTTGAATGGCAGG > 1:1300595/1‑35 CAGTAGCAGGCTGGTTTCAACCGTTGAATGGCAGG > 1:971121/1‑35 AGTAGCAGGCTGGTTTCAACCGTTGAATGGCAGGG > 1:16212311/1‑35 AGTAGCAGGCTGGTTTCAACCGTTGAATGGCAGGG > 1:18087011/1‑35 GTAGCAGGCTGGTTTCAACCGTTGAATGGCAGGGG > 1:19127598/1‑35 GTAGCAGGCTGGTTTCAACCGTTGAATGGCAGGGG > 1:11724850/1‑35 TAGCAGGCTGGTTTCAACCGTTGAATGGCAGGGGG > 1:15460511/1‑35 TAGCAGGCTGGTTTCAACCGTTGAATGGCAGGGGG > 1:8604599/1‑35 CAGGCTGGTTTCAACCGTTGAATGGCAGGGGGGca > 1:10844572/1‑33 CAGGCTGGTTTCAACCGTTGAATGGCAGGGGGGGg > 1:15180992/1‑34 AGGCTGGTTTCAACCGTTGAATGGCAGGGGGGcag > 1:7980870/1‑32 AGGCTGGTTTCAACCGTTGAATGGCAGGAGGGGCG > 1:18222591/1‑35 AGGCTGGTTTCAACCGTTGAATGGCAGGAGGGGCG > 1:16017432/1‑35 GGCTGGTTTCAACCGTTGAATGGCAGGGGCGGCGG > 1:5701936/1‑35 GCTGGTTTCAACCGTTGAATGGCAGGGGGGGGGGG > 1:14419950/1‑35 GCTGGTTTCAACCGTTGAATGGCAGGGGGGGCGGG > 1:6484225/1‑35 CTGGTTTCAACCGTTGAATGGCAGGGGGGGCGGGG > 1:13467863/1‑35 CTGGTTTCAACCGTTGAATGGCAGGGGGGGCGGGG > 1:9786142/1‑35 TGGTTTCAACCGTTGAATGGCAGGGGGGGGGGGGg > 1:9685832/1‑34 TGGTTTCAACCGTTGAATGGCAGGGGGGGCGGGGg > 1:3913297/1‑34 CCGACAGTAGCAGGCTGGTTTCAACCGTTGAATGGCAG‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1661115‑1661078 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGGGGGCGGGGA < REL606/3625456‑3625445 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |