New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1017944 | 68 (0.660) | 11 (0.110) | 7/48 | NT | 11.4% | coding (1638/2601 nt) | ycbS | predicted outer membrane usher protein |
? | REL606 | = 3424887 | 103 (1.000) | intergenic (+105/‑21) | nirD/nirC | nitrite reductase small subunit/nitrite transporter |
Only 100 of 169 total aligned reads displayed.
CATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACAC > REL606/3424853‑3424921 | cATTTTTTAAACTTTTTGTTTTATTTTTTGttttt < 1:6576919/35‑1 (MQ=255) aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa < 1:9555831/35‑1 (MQ=255) aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa < 1:8077502/35‑1 (MQ=255) aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa > 1:8701756/1‑35 (MQ=255) aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa < 1:563000/35‑1 (MQ=255) aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa > 1:4844142/1‑35 (MQ=255) aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa < 1:19826885/35‑1 (MQ=255) ttttttAAACTTTTTGTTTTATTTTTTGTTTTTAt < 1:7056002/35‑1 (MQ=255) tttttAAACTTTTTTTTTTATTTTTTGTTTTTAtt > 1:14887760/1‑35 (MQ=255) tttttAAACTTTTTGTTTTATTTTTTGTTTTTAtt > 1:14457138/1‑35 (MQ=255) tttttAAACTTTTTGTTTTATTTTTTGTTTTTAtt < 1:257761/35‑1 (MQ=255) ttttAAACTTTTTGTTTTATTTTTTGTTTTTAttt < 1:20294406/35‑1 (MQ=255) ttttAAACTTTTTGTTTTATTTTTTGTTTTTAttt < 1:8610547/35‑1 (MQ=255) ttttAAACTTTTTGTTTTATTTTTTGTTTTTAttt > 1:2873631/1‑35 (MQ=255) tttAAACTTTTTGTTTTATTTTTTGTTTTTAtttt > 1:225515/1‑35 (MQ=255) tttAAACTTTTTGTTTTATTTTTTGTTTTTAtttt < 1:18458225/35‑1 (MQ=255) tttAAACTTTTTGTTTTATTTTTTGTTTTTAtttt < 1:4758577/35‑1 (MQ=255) ttAAACTTTTTGTTTTATTTTTTGTTTTTAttttt > 1:9328096/1‑35 (MQ=255) ttAAACTTTTTGTTTTATTTTTTGTTTTTAttttt > 1:3797546/1‑35 (MQ=255) aaaCTTTTTGTTTTATTTTTTGTTTTTATTTTTTa < 1:17693802/35‑1 (MQ=255) aaaCTTTTTGTTTTATTTTTTGTTTTTATTTTTTa < 1:16692905/35‑1 (MQ=255) aaaCTTTTTGTTTTATTTTTTGTTTTTATTTTTTa > 1:13822495/1‑35 (MQ=255) aCTTTTTGTTTTATTTTTTGTTTTTATTTTTTaaa > 1:12427624/1‑35 (MQ=255) aCTTTTTGTTTTATTTTTTGTTTTTATTTTTTaaa > 1:14932759/1‑35 (MQ=255) aCTTTTTGTTTTATTTTTTGTTTTTATTTTTTaaa > 1:5098233/1‑35 (MQ=255) cTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAg > 1:19091734/1‑35 (MQ=255) cTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAg > 1:1356268/1‑35 (MQ=255) tttttGTTTTATTTTTTGTTTTTATTTTTTAAAgg > 1:4289971/1‑35 (MQ=255) tttttGTTTTATTTTTTGTTTTTATTTTTTAAAgg > 1:12314819/1‑35 (MQ=255) tttttGTTTTATTTTTTGTTTTTATTTTTTAAAgg > 1:8582267/1‑35 (MQ=255) tttttGTTTTATTTTTTGTTTTTATTTTTTAAAgg < 1:1379688/35‑1 (MQ=255) tttttGTTTTATTTTTTGTTTTTATTTTTTAAAgg > 1:7927135/1‑35 (MQ=255) ttttGTTTTATTTTTTGTTTTTATTTTTTAAAGGa < 1:19799718/35‑1 (MQ=255) ttttGTTTTATTTTTTGTTTTTATTTTTTAAAGGa > 1:16657802/1‑35 (MQ=255) ttttGTTTTATTTTTTGTTTTTATTTTTTAAAGGa > 1:12422236/1‑35 (MQ=255) tttGTTTTATTTTTTGTTTTTATTTTTTAAAGGAt > 1:811462/1‑35 (MQ=255) tttGTTTTATTTTTTGTTTTTATTTTTTAAAGGAt > 1:18625674/1‑35 (MQ=255) tGTTTTATTTTTTGTTTTTATTTTTTAAAGGATaa > 1:20244530/1‑35 (MQ=255) tGTTTTATTTTTTGTTTTTATTTTTTAAAGGATaa > 1:15519001/1‑35 (MQ=255) tGTTTTATTTTTTGTTTTTATTTTTTAAAGGATaa > 1:12754513/1‑35 (MQ=255) tGTTTTATTTTTTGTTTTTATTTTTTAAAGGATaa > 1:17762665/1‑35 (MQ=255) gTTTTATTTTTTGTTTTTATTTTTTAAAGGATAAt > 1:7772314/1‑35 (MQ=255) gTTTTATTTTTTGTTTTTATTTTTTAAAGGATAAt > 1:20549924/1‑35 (MQ=255) gTTTTATTTTTTGTTTTTATTTTTTAAAGGATAAt > 1:3701371/1‑35 (MQ=255) ttttATTTTTTTTTTTTtagccgatcctgttgatc > 1:3420825‑M2/1‑17 (MQ=255) ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc < 1:14911736/35‑1 (MQ=255) ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc > 1:35606/1‑35 (MQ=255) ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc < 1:5226727/35‑1 (MQ=255) ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc < 1:16278075/35‑1 (MQ=255) ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc < 1:6299530/35‑1 (MQ=255) ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc > 1:7191355/1‑35 (MQ=255) ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc > 1:847058/1‑35 (MQ=255) ttttATTTTTTGTTTTTATTTTTTAAAGGATAATc < 1:19437533/35‑1 (MQ=255) tttATTTTTTGTTTTTATTTTTTAAAGGATAATCa < 1:20200164/35‑1 (MQ=255) ttATTTTTTTTTTTTtagccgatcctgttgatccg > 1:12537491‑M2/1‑15 (MQ=255) ttATTTTTTGTTTTTATTTTTTAAAGGATAATCaa < 1:176260/35‑1 (MQ=255) ttATTTTTTGTTTTTATTTTTTAAAGGATAATCaa < 1:8748361/35‑1 (MQ=255) ttATTTTTTGTTTTTATTTTTTAAAGGATAATCaa < 1:7683273/35‑1 (MQ=255) tATTTTTTGTTTTTATTTTTTAAAGGATAATCaaa < 1:19201951/35‑1 (MQ=255) tATTTTTTGTTTTTATTTTTTAAAGGATAATCaaa < 1:18400420/35‑1 (MQ=255) aTTTTTTGTTTTTATTTTTTAAAGGATAATCAAAt > 1:12771977/1‑35 (MQ=255) aTTTTTTGTTTTTATTTTTTAAAGGATAATCAAAt < 1:4356060/35‑1 (MQ=255) aTTTTTTGTTTTTATTTTTTAAAGGATAATCAAAt > 1:17523590/1‑35 (MQ=255) aTTTTTTGTTTTTATTTTTTAAAGGATAATCAAAt < 1:960272/35‑1 (MQ=255) ttttttTTTTTTtagccgatcctgttgatccgtat > 1:18225007‑M2/1‑12 (MQ=255) ttttttTTTTTTtagccgatcctgttgatccgtat > 1:8332556‑M2/1‑12 (MQ=255) ttttttGTTTTTATTTTTTAAAGGATAATCAAATg < 1:5845915/35‑1 (MQ=255) ttttttGTTTTTATTTTTTAAAGGATAATCAAATg > 1:2388316/1‑35 (MQ=255) ttttttGTTTTTATTTTTTAAAGGATAATCAAATg > 1:10608734/1‑35 (MQ=255) ttttttGTTTTTATTTTTTAAAGGATAATCAAATg > 1:20588693/1‑35 (MQ=255) tttttGTTTTTATTTTTTAAAGGATAATCAAATGt > 1:12981082/1‑35 (MQ=255) tttttGTTTTTATTTTTTAAAGGATAATCAAATGt > 1:19215928/1‑35 (MQ=255) ttttGTTTTTATTTTTTAAAGGATAATCAAATGtt < 1:13455623/35‑1 (MQ=255) ttttGTTTTTATTTTTTAAAGGATAATCAAATGtt > 1:15875560/1‑35 (MQ=255) ttttGTTTTTATTTTTTAAAGGATAATCAAATGtt > 1:17154729/1‑35 (MQ=255) tttGTTTTTATTTTTTAAAGGATAATCAAATGttt < 1:14588236/35‑1 (MQ=255) tttGTTTTTATTTTTTAAAGGATAATCAAATGttt < 1:17304390/35‑1 (MQ=255) tttGTTTTTATTTTTTAAAGGATAATCAAATGttt < 1:5447655/35‑1 (MQ=255) tttGTTTTTATTTTTTAAAGGATAATCAAATGttt > 1:3286466/1‑35 (MQ=255) gtttTTTTTtagccgatcctgttgatccgtatgcc > 1:2443475‑M2/2‑9 (MQ=255) ttTTTTTTtagccgatcctgttgatccgtatgcca > 1:5364837‑M2/1‑8 (MQ=255) ttGTTTTTATTTTTTAAAGGATAATCAAATGTTTa < 1:11911955/35‑1 (MQ=255) ttGTTTTTATTTTTTAAAGGATAATCAAATGTTTa < 1:15614317/35‑1 (MQ=255) ttGTTTTTATTTTTTAAAGGATAATCAAATGTTTa < 1:7708363/35‑1 (MQ=255) ttGTTTTTATTTTTTAAAGGATAATCAAATGTTTa < 1:14304938/35‑1 (MQ=255) ttGTTTTTATTTTTTAAAGGATAATCAAATGTTTa > 1:4181641/1‑35 (MQ=255) tGTTTTTATTTTTTAAAGGATAATCAAATGTTTAc < 1:13304972/35‑1 (MQ=255) tGTTTTTATTTTTTAAAGGATAATCAAATGTTTAc > 1:15452885/1‑35 (MQ=255) tGTTTTTATTTTTTAAAGGATAATCAAATGTTTAc < 1:5680363/35‑1 (MQ=255) ttttttagccgatcctgttgatccgtatgccagta > 1:15299535‑M2/1‑5 (MQ=255) ttttttagccgatcctgttgatccgtatgccagta > 1:11388539‑M2/1‑5 (MQ=255) tttttagccgatcctgttgatccgtatgccagtaa > 1:15835781‑M2/1‑4 (MQ=255) ttttATTTTTTAAAGGATAATCAAATGTTTACAGa < 1:13637365/35‑1 (MQ=255) ttttATTTTTTAAAGGATAATCAAATGTTTACAGa > 1:9473293/1‑35 (MQ=255) ttttATTTTTTAAAGGATAATCAAATGTTTACAGa > 1:11086660/1‑35 (MQ=255) ttttagccgatcctgttgatccgtatgccagtaag > 1:2107722‑M2/1‑3 (MQ=255) tttATTTTTTAAAGGATAATCAAATGTTTACAGac > 1:11659497/1‑35 (MQ=255) ttATTTTTTAAAGGATAATCAAATGTTTACAGaca < 1:13970178/35‑1 (MQ=255) ttagccgatcctgttgatccgtatgccagtaagtt > 1:19656895‑M2/1‑1 (MQ=255) ttagccgatcctgttgatccgtatgccagtaagtt > 1:9637745‑M2/1‑1 (MQ=255) | CATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACAC > REL606/3424853‑3424921 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |