New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1306117 = | 70 (0.680) | 13 (0.140) | 4/44 | NT | 14.3% | coding (123/1461 nt) | cls | cardiolipin synthetase |
? | REL606 | 4085858 = | 92 (0.980) | intergenic (+56/‑93) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F |
Only 100 of 302 total aligned reads displayed.
TAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG > REL606/4085824‑4085888 | tgaccatgtggtttcttcatcctcagtaaggctgg > 1:6790379‑M2/35‑35 (MQ=255) tgaccatgtggtttcttcatcctcagtaaggctgg > 1:4962658‑M2/35‑35 (MQ=255) tgaccatgtggtttcttcatcctcagtaaggctgg > 1:1719083‑M2/35‑35 (MQ=255) tgaccatgtggtttcttcatcctcagtaaggctgg > 1:17308888‑M2/35‑35 (MQ=255) tAGACACCATCCCTGTCTTCCCCCACATGATGTgg > 1:5199534/1‑35 (MQ=255) tAGACACCATCCCTGTCTTCCCCCACATGATGTgg < 1:11559205/35‑1 (MQ=255) tAGACACCATCCCTGTCTTCCCCCACATGATGTgg < 1:18697059/35‑1 (MQ=255) tAGACACCATCCCTGTCTTCCCACACATGATGTgg < 1:18510542/35‑1 (MQ=255) gttcaaagagttcggcaacaaaggcttccggctgg > 1:19893287‑M2/35‑35 (MQ=255) gttaatcagaccattggtcgagctatcgtggcTgg < 1:6552748‑M1/3‑1 (MQ=255) gttaatcagaccattggtcgagctatcgtggcTgg < 1:15435378‑M1/3‑1 (MQ=255) gttaatcagaccattggtcgagctatcgtggcTgg < 1:10238223‑M1/3‑1 (MQ=255) gaccatgtggtttcttcatcctcagtaaggctggg > 1:8750485‑M2/34‑35 (MQ=255) cgacgcgcagttccctccgcgatggcctggctggg > 1:10384456‑M2/34‑35 (MQ=255) cgacgcgcagttccctccgcgatggcctggctggg > 1:4614712‑M2/34‑35 (MQ=255) aGACACCATCCCTGTCTTCCCCCACATGATGTggg < 1:17594398/35‑1 (MQ=255) aGACACCATCCCTGTCTTCCCCCACATGATGTggg > 1:17507439/1‑35 (MQ=255) aGACACCATCCCTGTCTTCCCCCACATGATGTggg < 1:362459/35‑1 (MQ=255) tcaaagagttcggcaacaaaggcttccggctgggg > 1:12228793‑M2/33‑35 (MQ=255) taatcagaccattggtcgagctatcgtggcTgggg < 1:9589721‑M1/5‑1 (MQ=255) gacgcgcagttccctccgcgatggcctggctgggg > 1:12083878‑M2/33‑35 (MQ=255) ccatgtggtttcttcatcctcagtaaggctggggg > 1:15013449‑M2/32‑35 (MQ=255) ccatgtggtttcttcatcctcagtaaggctggggg > 1:2238830‑M2/32‑35 (MQ=255) ccatgtggtttcttcatcctcagtaaggctggggg > 1:10698812‑M2/32‑35 (MQ=255) caaagagttctgcaacaaaggcttccggctggggg > 1:19560510‑M2/32‑35 (MQ=255) caaagagttcggcaacaaaggcttccggctggggg > 1:8172736‑M2/32‑35 (MQ=255) acgcgcagttccctccgcgatggcctggctggggg > 1:1197586‑M2/32‑35 (MQ=255) acacCATCCCTGTCTTCCCCCACATGATGTggggg < 1:11644029/35‑1 (MQ=255) cgcgcagttccctccgcgatggcctggctgggggg > 1:8349529‑M2/31‑34 (MQ=255) cacCATCCCTGTCTTCCCCCACATGATGTgggggg > 1:3718180/1‑34 (MQ=255) cacCATCCCTGTCTTCCCCCACATGATGTGGGGGt < 1:74153/35‑1 (MQ=255) aaagagttcggcaacaaaggcttccggctgggggg > 1:6171822‑M2/31‑34 (MQ=255) tcagaccattggtcgagctatcgtggcTGGGGGtt < 1:14000037‑M1/8‑1 (MQ=255) atgtggtttcttcatcctcagtaaggctggggttg > 1:7815673‑M2/30‑32 (MQ=255) acCATCCCTGTCTTCCCCCACATGATGTggggggt > 1:18988255/1‑33 (MQ=255) acCATCCCTGTCTTCCCCCACATGATGTGGGGGtt < 1:16204576/35‑1 (MQ=255) acCATCCCTGTCTTCCCCCACATGATGTGGGGGtt < 1:19117474/35‑1 (MQ=255) acCATCCCTGTCTTCCCCCACATGATGTGGGGGtt < 1:14829896/35‑1 (MQ=255) tgtggtttcttcatcctcagtaaggctgGGggtgt > 1:3800232‑M2/29‑33 (MQ=255) ccATCCCTGTCTTCCCCCACATGATGTGGGGGttt < 1:3133481/35‑1 (MQ=255) cagaccattggtcgagctatcgtggcTGGGGGttt < 1:15158048‑M1/9‑1 (MQ=255) agagttcggcaacaaaggcttccggctgGGGGttt > 1:8821663‑M2/29‑35 (MQ=255) gcagttccctccgcgatggcctggctgGGGGgttt > 1:1968520‑M2/28‑35 (MQ=255) gagttcggcaacaaatgcttccggctgGGGGtttt > 1:4014834‑M2/28‑35 (MQ=255) gagttcggcaacaaaggcttccggctgGGGGtttt > 1:10554707‑M2/28‑35 (MQ=255) cATCCCTGTCTTCCCCCACATGATGTGGGGGtttt < 1:695162/35‑1 (MQ=255) cATCCCTGTCTTCCCCCACATGATGTGGGGGgttt > 1:2884248/1‑35 (MQ=255) agaccattggtcgagctatcgtggcTGGGGGtttt < 1:20032548‑M1/10‑1 (MQ=255) tggtttcttcatcctcagtaaggctgGGGGttttt > 1:11784946‑M2/27‑35 (MQ=255) gcaaggctatttatggtgcggatggGGGGGttttt > 1:16963552‑M2/26‑35 (MQ=255) agttcggcaacaaagtcttccggctgGGGGttttt > 1:10958569‑M2/27‑35 (MQ=255) aTCCCTGTCTTCCCCCACATGATGTGGGGGttttt > 1:8522963/1‑35 (MQ=255) aTCCCTGTCTTCCCCCACATGATGTGGGGGttttt < 1:5340725/35‑1 (MQ=255) aTCCCTGTCTTCCCCCACATGATGTGGGGGttttt < 1:15878535/35‑1 (MQ=255) aTCCCTGTCTTCCCCCACATGATGTGGGGGgtttt > 1:18623174/1‑35 (MQ=255) aTCCCTGTCTTCCCCCACATGATGTGGGGGgtttt > 1:10046580/1‑35 (MQ=255) ggtttcttcatcctcagtaaggctgGGGTtttttt > 1:9421558‑M2/26‑35 (MQ=255) caaggctatttatggtgcggatggGGGGGtttttt > 1:20613145‑M2/25‑35 (MQ=255) caaggctatttatggtgcggatggGGGGGtttttt > 1:13132634‑M2/25‑35 (MQ=255) gtttcttcatcctcagtaaggctgGGGGttttttt > 1:7969943‑M2/25‑35 (MQ=255) gtttcttcatcctcagtaaggctgGGGGtcttttt > 1:17830888‑M2/25‑35 (MQ=255) tcggcaacaaaggcttccggctgGGGggtttttta > 1:475822‑M2/24‑34 (MQ=255) tcggcaacaaaggcttccggctgGGGGtttttttt > 1:1857658‑M2/24‑35 (MQ=255) ccTGTCTTCCCCCACATGATGTGGGGGgttttttt > 1:11068382/1‑35 (MQ=255) ccTGTCTTCCCCCACATGATGTGGGGGgttttttt > 1:10060995/1‑35 (MQ=255) cattggtcgagctatcgtggcTGGTGGtttttttt < 1:15385062‑M1/14‑1 (MQ=255) cattggtcgagctatcgtggcTGGGGattttttta < 1:12278591‑M1/14‑2 (MQ=255) cattggtcgagctatcgtggcTGGGGGtttttttt < 1:11234372‑M1/14‑1 (MQ=255) ttcttcatcctcagtaaggctgGGGgttttttttt > 1:6902834‑M2/23‑34 (MQ=255) ttcttcatcctcagtaaggctgGGGgtattttttt > 1:4182515‑M2/23‑34 (MQ=255) ggctatttatggtgcggatggGGGGgttttttttt > 1:5677434‑M2/22‑34 (MQ=255) cTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTa < 1:274646/35‑1 (MQ=255) cTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTa < 1:14284519/35‑1 (MQ=255) attggtcgagctatcgtggcTGGGGgtttcttttt < 1:4561742‑M1/15‑2 (MQ=255) tGTCTTCCCCCACATGATGTGGGGGtttttttttt > 1:2945875/1‑33 (MQ=255) tGTCTTCCCCCACATGATGTGGGGGgttttttttt > 1:2612994/1‑33 (MQ=37) tGTCTTCCCCCACATGATGTGGGGGTTTTTTTTAt < 1:9696462/35‑1 (MQ=255) gTCTTCCCCCACATGATGTGGGGGTTTTTTTTTTc > 1:15656010/1‑35 (MQ=255) gTCTTCCCCCACATGATGTGGGGGTTTTTTTTATc < 1:14644912/35‑1 (MQ=255) gTCTTCCCCCACATGATGTGGGGGGTTTTTTTTTc > 1:5485741/1‑35 (MQ=37) tCTTCCCCCACATGATGTGGGGGTTTTTTTTATcc < 1:16319257/35‑1 (MQ=255) cTTCCCCCACATGATGTGGGGGTTTTTTTTATCCt < 1:6404747/35‑1 (MQ=255) cTTCCCCCACATGATGTGGGGGGTTTTTTTATTCt > 1:20254376/1‑35 (MQ=37) ttCCCCCACATGATGTGGGGGGTTTTTTTTTCCTc > 1:12719590/1‑35 (MQ=25) tCCCCCACATGATGTGGGGG‑TTTTTTTATCCTCaa < 1:16558481/35‑1 (MQ=37) cccccACATGATGTGGGGGTTTTTTTTATCCTCaa < 1:12930696/35‑1 (MQ=255) cccccACATGATGTGGGGGTTTTTTTTATCCTCaa > 1:12513393/1‑35 (MQ=255) cccACATGATGTGGGGGTTTTTTTTATCCTCAAtt < 1:18073537/35‑1 (MQ=255) ccACATGATGTGGGGGTTTTTTTTATCCTCAAttt < 1:16123998/35‑1 (MQ=255) ccACATGATGTGGGGGTTTTTTTTATCCTCAAttt < 1:9519151/35‑1 (MQ=255) acaTGATGTGGGGGTTTTTTTTATCCTCAATTTGc < 1:897353/35‑1 (MQ=255) caTGATGTGGGGGGTTTTTTTATCCTCAATTTGcc > 1:18414976/1‑35 (MQ=255) atgatgTGGGGGTTTTTTTTATCCTCAATTTGCct > 1:6009550/1‑35 (MQ=255) atgatgTGGGGGTTTTTTTTATCCTCAATTTGCct > 1:11886891/1‑35 (MQ=255) atgatgTGGGGGTTTTTTTTATCCTCAATTTGCct < 1:429445/35‑1 (MQ=255) tgatgTGGGGGTTTTTTTTATCCTCAATTTGCctg < 1:9121681/35‑1 (MQ=255) gatgtGGGGGTTTTTTTTATCCTCAATTTGCctgc < 1:3415638‑M2/30‑1 (MQ=255) atgtGGGGGTTTTTTTTATCCTCAATTTGCctgct > 1:17105610‑M2/5‑35 (MQ=255) atgtGGGGGTTTTTTTTATCCTCAATTTGCctgct < 1:1324511‑M2/31‑1 (MQ=255) tgtGGGGGTTTTTTTTATCCTCAATTTGCctgctg < 1:13485924‑M2/32‑1 (MQ=255) | TAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG > REL606/4085824‑4085888 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |