Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL606554,6170T→G100.0% 0.2 3V926G (GTG→GGG) ECB_00512putative tail component of prophage
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (1/0):  total (3/0)

CCCACAGCAAGTATCAGCGATTTGCTGGTTGTGGTGATGA  >  REL606/554586‑554625
                               |        
cccACAGCAAGTATCAGCGATTTGCTGGTTggggg       >  1:332519/1‑34 (MQ=0)
 ccACAGCAAGTATCAGCGATTTGCTGGTTgggggg      >  1:17227908/1‑33 (MQ=1)
 ccACAGCAAGTATCAGCGATTTGCTGGTTgggggg      >  1:2253049/1‑33 (MQ=1)
 ccACAGCAAGTATCAGCGATTTGCTGGTTgggggg      >  1:2854147/1‑33 (MQ=1)
  cacaGCAAGTATCAGCGATTTGCTGGTTggggggg     >  1:12016303/1‑32 (MQ=1)
  cacaGCAAGTATCAGCGATTTGCTGGTTggggggg     >  1:19677567/1‑32 (MQ=1)
  cacaGCAAGTATCAGCGATTTGCTGGTTGGGGgga     >  1:20461628/1‑35 (MQ=1)
   acaGCAAGTATCAGCGATTTGCTGGTTGTGGggaa    >  1:952510/1‑34 (MQ=0)
   acaGCAAGTATCAGCGATTTGCTGGTTGGGGggag    >  1:12215634/1‑34 (MQ=1)
     aGCAAGTATCAGCGATTTGCTGGTTGGGGggaatg  >  1:14980487/1‑32 (MQ=1)
                               |        
CCCACAGCAAGTATCAGCGATTTGCTGGTTGTGGTGATGA  >  REL606/554586‑554625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.