New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1830987 =34 (0.330)6 (0.080) 4/36 NT 13.9% coding (221/1359 nt) ydjE predicted transporter
?REL606 = 1996585 49 (0.640)coding (1262/1644 nt) yeeO predicted multidrug efflux system

CCTTTACCTCGGCATTAATGTTTGGTTATTTCATCGGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1831026‑1830987
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctcCCTTTGCCGGGGTTATGGCATCGTTTTACACCCA  <  REL606/1996585‑1996552
                                                                          
CCTTTACCTCGGCATTAATGTTTGGTTATTTCATC                                         <  1:15368754/35‑1
CCTTTACCTCGGCATTAATGTTTGGTTATTTCATC                                         >  1:7637075/1‑35
CCTTTACCTCGGCATTAATGTTTGGTTATTTCATC                                         >  1:2423073/1‑35
CCTTTACCTCGGCATTAATGTTTGGTTATTTCATC                                         >  1:13853189/1‑35
CCTTTACCTCGGCATTAATGTTTGGTTATTTCATC                                         <  1:5518895/35‑1
CCTTTACCTCGGCATTAATGTTTGGTTATTTCATC                                         <  1:5298721/35‑1
 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG                                        >  1:16154755/1‑35
 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG                                        <  1:17456438/35‑1
 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG                                        >  1:17712413/1‑35
 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG                                        >  1:18160513/1‑35
 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG                                        <  1:14094258/35‑1
 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG                                        >  1:3642534/1‑35
 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG                                        >  1:5288739/1‑35
 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG                                        >  1:11005253/1‑35
 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG                                        <  1:7819251/35‑1
 CTTTACCTCGGCATTAATGTTTGGTTATTTCATCG                                        <  1:10403188/35‑1
  TTTACCTCGGCATTAATGTTTGGTTATTTCATCtg                                       >  1:6257861/1‑33
  TTTACCTCGGCATTAATGTTTGGTTATTTCATCGG                                       <  1:5061632/35‑1
  TTTACCTCGGCATTAATGTTTGGTTATTTCATCGG                                       <  1:5668235/35‑1
  TTTACCTCGGCATTAATGTTTGGTTATTTCATCGG                                       >  1:8082214/1‑35
  TTTACCTCGGCATTAATGTTTGGTTATTTCATCGG                                       <  1:872224/35‑1
   TTACCTCGGCATTAATGTTTTGTTATTTCATCGGC                                      >  1:9642023/1‑35
   TTACCTCGGCATTAATGTTTGGTTATTTCATCGGC                                      >  1:18253833/1‑35
   TTACCTCGGCATTAATGTTTGGTTATTTCATCGGC                                      >  1:14151201/1‑35
   TTACCTCGGCATTAATGTTTGGTTATTTCATCGGC                                      >  1:2589679/1‑35
   TTACCTCGGCATTAATGTTTGGTTATTCCATCGGC                                      >  1:7783371/1‑35
    TACCTCGGCATTAATGTTTGGTTATTTCATCGGCT                                     >  1:4751508/1‑35
     ACCTCGGCATTAATGTTTGGTTATTTCATCGGCTC                                    >  1:10829388/1‑35
     ACCTCGGCATTAATGTTTGGTTATTTCATCGGCTC                                    <  1:2685326/35‑1
      CCTCGGCATTAATGTTTGGTTATTTCATCGGCTCC                                   >  1:6810050/1‑35
       CTCGGCATTAATGTTTGGTTATTTCATCGGCTCCC                                  >  1:13517369/1‑35
        TCGGCATTAATGTTTGGTTATTTCATCGGCTCCCc                                 >  1:6340809/1‑34
         CGGCATTAATGTTTGGTTATTTCATCGGCTCCCTT                                >  1:135099/1‑35
           GCATTAATGTTTGGTTATTTCATCGGCTCCCCTTc                              >  1:9581073/1‑34
           GCATTAATGTTTGGTTATTTCATCGGCTCCCCTTc                              >  1:13457623/1‑34
             ATTAATGTTTGGTTATTTCATCGGCTCCCTTTCCC                            >  1:12789494/1‑35
               TAATGTTTGGTTATTTCATCGGCTCCCTTTCCCGG                          >  1:4623321/1‑35
                AATGTTTGGTTATTTCATCGGCTCCCTTTCCCGGG                         >  1:3944599/1‑35
                 ATGTTTGGTTATTTCATCGGCTCCCTTTCCCGGGG                        >  1:15027576/1‑35
                 ATGTTTGGTTATTTCATCGGCTCCCTTTCCCGGGG                        >  1:6924732/1‑35
                  TGTTTGGTTATTTCATCGGCTCCCTTTCCCGGGGg                       >  1:2694542/1‑34
                                 actGCTCCCTTTGCCGGGGTTATGGCATCGTTTTA        >  1:10828241/4‑35
                                   GGCTCCCTTTGCCGGGGTTATGGCATCGTTTTACA      >  1:4810066/1‑35
                                   GGCTCCCTTTGCCGGGGTTATGGCATCGTTTTACA      <  1:7030298/35‑1
                                   GGCTCCCTTTGCCGGGGTTATGGCATCGTTTTACA      >  1:6463181/1‑35
                                   GGCTCCCTTTGCCGGGGTTATGGCATCGTTTTACA      >  1:1586854/1‑35
                                    GCTCCCTTTGCCGGGGTTATGGCATCGTTTTACAC     <  1:2176140/35‑1
                                    GCTCCCTTTGCCGGGGTTATGGCATCGGTTTACAC     >  1:13475329/1‑35
                                    GCTCCCTTTGCCGAGGTTATGGCATCGTTTTACAC     <  1:9361167/35‑1
                                     CTCCCTTTGCCGGGGTTATGGCATCGTTTTACACC    <  1:10666178/35‑1
                                     CTCCCTTTGCCGGGGTTATGGCATCGTTTTACACC    <  1:16930980/35‑1
                                     CTCCCTTTGCAGGGGTTATGGCATCGTTTTACACC    <  1:3786344/35‑1
                                      TCCCTTTGCCGGGGTTATGGCATCGTTTTACACCC   >  1:11943329/1‑35
                                      TCCCTTTGCCGGGGTTATGGCATCGTTTTACACCC   <  1:5687446/35‑1
                                      TCCCTTTGCCGGGGTTATGGCATCGTTTTACACCC   >  1:12485819/1‑35
                                      TCCCTTTGCCGGGGTTATGGCATCGTTTTACACCC   <  1:10818660/35‑1
                                       CCCTTTGCCGGGGTTATGGCATCGTTTTACACCCA  >  1:2679925/1‑35
                                       CCCTTTGCCGGGGTTATGGCATCGTTTTACACCCA  <  1:14915155/35‑1
                                       CCCTTTGCCGGGGTTATGGCATCGTTTTACACCCA  <  1:10585439/35‑1
                                                                          
CCTTTACCTCGGCATTAATGTTTGGTTATTTCATCGGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1831026‑1830987
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctcCCTTTGCCGGGGTTATGGCATCGTTTTACACCCA  <  REL606/1996585‑1996552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.