Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 4,110,237 IS150 (–) +3 bp 100% coding (296‑298/2433 nt) metL → bifunctional aspartate kinase II/homoserine dehydrogenase II

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3893554 =NA (NA)139 (1.480) 43/44 NT 100% noncoding (1/1443 nt) IS150 repeat region
?REL606 4110237 = 0 (0.000)coding (296/2433 nt) metL bifunctional aspartate kinase II/homoserine dehydrogenase II
* ? REL606 = 3894996NA (NA)79 (0.770) 28/48 NT 100% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 4110239 0 (0.000)coding (298/2433 nt) metL bifunctional aspartate kinase II/homoserine dehydrogenase II

Only 100 of 353 total aligned reads displayed.

GGTCTGCTACCCGCTGAAGAAGCCGATAGCCTCATTAGCGCTTTTGTCAGCGATCTGGAACGCCTGGCG  >  REL606/4110203‑4110271
                                  |                                  
ggTCTGCTACCCGCTGAAGAAGCCGATANNCTCNn                                    >  1:19351843/1‑35 (MQ=255)
ggTCTGCTACCCGCTGAAGAAGCCGATAGCCTCAt                                    >  1:3144095/1‑35 (MQ=255)
ccatttcatcgtccaacaaaatgggtgcagtacat                                    <  1:14051714‑M2/1‑1 (MQ=255)
ccatttcatcgtccaacaaaatgggtgcagtacat                                    <  1:11993754‑M2/1‑1 (MQ=255)
ccatttcatcgtccaacaaaatgggtgcagtacat                                    >  1:11878829‑M2/35‑35 (MQ=255)
ccatttcatcgtccaacaaaatgggtgcagtacat                                    >  1:11287465‑M2/35‑35 (MQ=255)
ccatttcatcgtccaacaaaatgggtgcagtacat                                    <  1:9156015‑M2/1‑1 (MQ=255)
 gTCTGCTACCCGCTGAAGAAGCCGATAGCCTCAtt                                   >  1:7969536/1‑35 (MQ=255)
 gTCTGCTACCCGCTGAAGAAGCCGATAGCCCCAtt                                   >  1:7814923/1‑35 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacatt                                   >  1:11648873‑M2/34‑35 (MQ=255)
 catttcatcgtccaacaaaatgggtgcagtacatt                                   <  1:2833949‑M2/2‑1 (MQ=255)
  atttcatcgtccaacaaaatgggtgcagtacattg                                  >  1:8433771‑M2/33‑34 (MQ=255)
   tttcatcgtccaacaaaatgggtgcagtacaTTAg                                 <  1:9529327‑M2/4‑1 (MQ=255)
    ttcatcgtccaacaaaatgggtgcagtacaTTAgc                                >  1:16253357‑M2/31‑35 (MQ=255)
    ttcatcgtccaacaaaatgggtgcagtacaTTAgc                                <  1:19863167‑M2/5‑1 (MQ=255)
    tGCTACCCGCTGAAGAAGCCGATAGCCTCATTAtg                                <  1:9600947‑M2/35‑3 (MQ=255)
    tGCTACCCGCTGAAGAAGCCGATAGCCTCATTAtg                                <  1:1610938‑M2/35‑3 (MQ=255)
     tcatcgtccaacaaaatgggtgcagtacaTTAgcg                               <  1:569383‑M2/6‑1 (MQ=255)
     tcatcgtccaacaaaatgggtgcagtacaTTAgcg                               >  1:10828914‑M2/30‑35 (MQ=255)
      catcgtccaacaaaatgggtgcagtacaTTAgcgc                              >  1:7252299‑M2/29‑35 (MQ=255)
      catcgtccaacaaaatgggtgcagtacaTTAgcgc                              >  1:6420449‑M2/29‑35 (MQ=255)
      cTACCCGCTGAAGAAGCCGATAGCCTCATTAtgta                              <  1:5040129‑M2/35‑5 (MQ=255)
       atcgtccaacaaaatgggtgcagtacaTTAGCGCt                             >  1:887095‑M2/28‑35 (MQ=255)
       atcgtccaacaaaatgggtgcagtacaTTAGCGCt                             <  1:9817614‑M2/8‑1 (MQ=255)
        tcgtccaacaaaatgggtgcagtacaTTAGCGCtt                            <  1:16844177‑M2/9‑1 (MQ=255)
        aCCCGCTGAAGAAGCCGATAGCCTCATTAtgtact                            <  1:14271990‑M2/35‑7 (MQ=255)
        aCCCGCTGAAGAAGCCGATAGCCTCATTAtgtact                            <  1:6717374‑M2/35‑7 (MQ=255)
          gtccaacaaaatgggtgcagtacaTTAGCGCtttt                          <  1:17011524‑M2/11‑1 (MQ=255)
          gtccaacaaaatgggtgcagtacaTTAGCGCtttt                          <  1:10938460‑M2/11‑1 (MQ=255)
           tccaacaaaatgggtgcagtacaTTAGCGCTTTTg                         >  1:17520121‑M2/24‑35 (MQ=255)
            ccaacaaaatggttgcagtacaTTAGCGCTTTTGt                        >  1:17792633‑M2/23‑35 (MQ=255)
            ccaacaaaatgggtgcagtacaTTAGCGCTTTTGt                        <  1:310928‑M2/13‑1 (MQ=255)
            ccaacaaaatgggtgcagtacaTTAGCGCTTTTGt                        >  1:12116777‑M2/23‑35 (MQ=255)
            ccaacaaaatgggtgcagtacaTTAGCGCTTTTGt                        >  1:10598415‑M2/23‑35 (MQ=255)
             caacaaaatgggtgcagtacaTTAGCGCTTTTGTc                       >  1:13475766‑M2/22‑35 (MQ=255)
             caacaaaatgggtgcagtacaTTAGCGCTTTTGTc                       <  1:17678561‑M2/14‑1 (MQ=255)
              aacaaaatgggtgcagtacaTTAGCGCTTTTGTCa                      >  1:9254554‑M2/21‑35 (MQ=255)
              aacaaaatgggtgcagtacaTTAGCGCTTTTGTCa                      >  1:10016796‑M2/21‑35 (MQ=255)
              aacaaaatgggtgcagtacaTTAGCGCTTTTGTCa                      <  1:11510228‑M2/15‑1 (MQ=255)
               acaaaatgggtgcagtacaTTAGCGCTTTTGTCAg                     >  1:19752379‑M2/20‑35 (MQ=255)
               acaaaatgggtgcagtacaTTAGCGCTTTTGTCAg                     <  1:18786593‑M2/16‑1 (MQ=255)
                caaaatgggtgcagtacaTTAGCGCTTTTGTCAGc                    <  1:6760238‑M2/17‑1 (MQ=255)
                caaaatgggtgcagtacaTTAGCGCTTTTGTCAGc                    <  1:1659678‑M2/17‑1 (MQ=255)
                aagaagCCGATAGCCTCATTAtgtactgaccccaa                    <  1:10396128‑M2/35‑15 (MQ=255)
                 aaaatgggtgcagtacaTTAGCGCTTTTGTCAGCg                   <  1:179675‑M2/18‑1 (MQ=255)
                  aaatgggtgcagtacaTTAGCGCTTTTGTCAGCGa                  <  1:11253372‑M2/19‑1 (MQ=255)
                   aatgggtgcagtacaTTAGCGCTTTTGTCAGCGAt                 >  1:15400137‑M2/16‑35 (MQ=255)
                   aatgggtgcagtacaTTAGCGCTTTTGTCAGCGAt                 <  1:5621057‑M2/20‑1 (MQ=255)
                   aatgggtgcagtacaTTAGCGCTTTTGTCAGCGAt                 <  1:3739573‑M2/20‑1 (MQ=255)
                    agCCGATAGCCTCATTAtgtactgaccccaaaaag                <  1:16401521‑M2/35‑19 (MQ=255)
                     tgggtgcagtacaTTAGCGCTTTTGTCAGCGATCt               <  1:4196885‑M2/22‑1 (MQ=255)
                     tgggtgcagtacaTTAGCGCTTTTGTCAGCGATCt               >  1:1871137‑M2/14‑35 (MQ=255)
                     gCCGATAGCCTCATTAtgtactgaccccaaaaagt               <  1:15506107‑M2/35‑20 (MQ=255)
                      gggtgcagtacaTTAGCGCTTTTGTCAGCGATCTg              <  1:10487392‑M2/23‑1 (MQ=255)
                      ccGATAGCCTCATTAtgtactgaccccaaaaagtt              <  1:7483958‑M2/35‑21 (MQ=255)
                      ccGATAGACTCATTAtgtactgaccccaaaaagtt              >  1:14493390‑M2/1‑15 (MQ=255)
                       ggtgcagtacaTTAGCGCTTTTGTCAGCGATCTgg             >  1:12723312‑M2/12‑35 (MQ=255)
                       ggtgcagtacaTTAGCGCTTTTGTCAGCGATCTgg             <  1:13909737‑M2/24‑1 (MQ=255)
                       cGATAGCCTCATTAtgtactgaccccaaaaagttg             <  1:17121617‑M2/35‑22 (MQ=255)
                        gtgcagtacaTTAGCGCTTTTGTCAGCGATCTGGa            >  1:7599620‑M2/11‑35 (MQ=255)
                        gtgcagtacaTTAGCGCTTTTGTCAGCGATCTGGa            >  1:6133156‑M2/11‑35 (MQ=255)
                        gtgcagtacaTTAGCGCTTTTGTCAGCGATCTGGa            <  1:15022199‑M2/25‑1 (MQ=255)
                        gtgcagtacaTTACCGCTTTTGTCAGCGATCTGGa            >  1:12388464‑M2/11‑35 (MQ=255)
                         tgcagtacaTTAGCGCTTTTGTCAGCGATCTGGaa           <  1:19382616‑M2/26‑1 (MQ=255)
                         tgcagtacaTTAGCGCTTTTGTCAGCGATCTGGaa           >  1:10647483‑M2/10‑35 (MQ=255)
                         tgcagtacaTTAGCGCTTTTGTCAGCGATCTGGaa           >  1:12976370‑M2/10‑35 (MQ=255)
                         tgcagtacaTTAGCGCTTTTGTCAGCGATCTGGaa           <  1:2374365‑M2/26‑1 (MQ=255)
                         gtaGCCTCATTAtgtactgaccccaaaaagttgga           >  1:20325980‑M2/2‑12 (MQ=255)
                         aTAGCCTCATTAtgtactgaccccaaaaagttgga           <  1:13149184‑M2/35‑24 (MQ=255)
                          tAGCCTCATTAtgtactgaccccaaaaagttggac          >  1:12843745‑M2/1‑11 (MQ=255)
                          tAGCCTCATTAtgtactgaccccaaaaagttggac          <  1:20070594‑M2/35‑25 (MQ=255)
                          tAGCCTCATTAtgtactgaccccaaaaagttggac          >  1:3478333‑M2/1‑11 (MQ=255)
                          gcagtacaTTAGCGCTTTTGTCAGCGATCTGGAAc          >  1:9291880‑M2/9‑35 (MQ=255)
                          gcagtacaTTAGCGCTTTTGTCAGCGATCTGGAAc          <  1:18258111‑M2/27‑1 (MQ=255)
                           cagtacaTTAGCGCTTTTGTCAGCGATCTGGAACg         <  1:10201347‑M2/28‑1 (MQ=255)
                           cagtacaTTAGCGCTTTTGTCAGCGATCTGGAACg         <  1:13631404‑M2/28‑1 (MQ=255)
                            gCCTCATTAtgtactgaccccaaaaagttggacag        >  1:20144540‑M2/1‑9 (MQ=255)
                            gCCTCATTAtgtactgaccccaaaaagttggacag        >  1:19513236‑M2/1‑9 (MQ=255)
                             gtacaTTAGCGCTTTTGTCAGCGATCTGGAACGcc       <  1:810302‑M2/30‑1 (MQ=255)
                             ccTCATTAtgtactgaccccaaaaagttggacagt       <  1:2576815‑M2/35‑28 (MQ=255)
                             ccTCATTAtgtactgaccccaaaaagttggacagt       <  1:15810312‑M2/35‑28 (MQ=255)
                              tacaTTAGCGCTTTTGTCAGCGATCTGGAACTCCt      >  1:8664367‑M2/5‑35 (MQ=255)
                              cTCATTAtgtactgaccccaaaaagttggacagtt      <  1:13655515‑M2/35‑29 (MQ=255)
                              cTCATTAtgtactgaccccaaaaagttggacagtt      >  1:1919399‑M2/1‑7 (MQ=255)
                               acaTTAGCGCTTTTGTCAGCGATCTGGAACGCCTg     <  1:15070914‑M2/32‑1 (MQ=255)
                               acaTTAGCGCTTTTGTCAGCGATCTGGAACGCCTg     <  1:3565239‑M2/32‑1 (MQ=255)
                                cATTAtgtactgaccccaaaaagttggacagttaa    <  1:7902151‑M2/35‑31 (MQ=255)
                                cATTAtgtactgaccccaaaaagttggacagttaa    <  1:18133471‑M2/35‑31 (MQ=255)
                                cATTAtgtactgaccccaaaaagttggacagttaa    >  1:3871059‑M2/1‑5 (MQ=255)
                                cATTAtgtactgaccccaaaaagttggacagttaa    >  1:5366118‑M2/1‑5 (MQ=255)
                                cATTAtgtactgaccccaaaaagttggacagttaa    <  1:5282535‑M2/35‑31 (MQ=255)
                                cATTAtgtactgaccccaaaaagttggacagttaa    <  1:17423695‑M2/35‑31 (MQ=255)
                                 aTTAtgtactgaccccaaaaagttggacagttaaa   >  1:4623590‑M2/1‑4 (MQ=255)
                                 aTTAGCGCTTTTGTCAGCGATCTGGAACGCCTGGc   <  1:1944114‑M2/34‑1 (MQ=255)
                                  ttAtgtactgaccccaaaaagttggacagttaaac  <  1:14622383‑M2/35‑33 (MQ=255)
                                  ttAtgtactgaccccaaaaagttggacagttaaac  <  1:20518981‑M2/35‑33 (MQ=255)
                                  ttAtgtactgacccaaaaaagttggacagttaaac  >  1:14791968‑M2/1‑3 (MQ=255)
                                  ttAGCGCTTTTGTCAGCGATCTGGAACGCCTggcg  >  1:5866010/1‑35 (MQ=255)
                                  ttAGCGCTTTTGTCAGCGATCTGGAACGCCTggcg  <  1:2706230/35‑1 (MQ=255)
                                  ttAGCGCTTTTGTCAGCGATCTGGAACGCCTggcg  <  1:4397254/35‑1 (MQ=255)
                                  |                                  
GGTCTGCTACCCGCTGAAGAAGCCGATAGCCTCATTAGCGCTTTTGTCAGCGATCTGGAACGCCTGGCG  >  REL606/4110203‑4110271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.