New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 664687 | 67 (0.650) | 34 (0.380) | 20/42 | NT | 39.4% | intergenic (‑78/‑48) | gltL/insJ‑2 | ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein |
? | REL606 | 666134 = | 46 (0.510) | pseudogene (354/387 nt) | gltL | ATP‑binding protein of glutamate/aspartate transport system; b0652_2 |
Only 100 of 337 total aligned reads displayed.
GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGG > REL606/664653‑664721 | gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT < 1:9764151‑M1/35‑1 (MQ=255) gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT > 1:13208324‑M1/1‑35 (MQ=255) gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT > 1:6377989‑M1/1‑35 (MQ=255) cGTGAGCAGAAAGCCCGACACGCTCCAGCAGtttt > 1:13017875/1‑35 (MQ=255) tttgtgcgagccatcttccaccctttgaaaTTTGt > 1:12884200‑M1/31‑35 (MQ=255) gAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagg > 1:13700005‑M1/1‑31 (MQ=255) aGCAGAAAGCCCGACACGCTCCAGCAGTTTcaggg < 1:11056321‑M1/35‑6 (MQ=255) aGCAGAAAGCCCGACACGCTCCAGCAGTTTcaggg > 1:11672344‑M1/1‑30 (MQ=255) aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAc < 1:2327532/35‑1 (MQ=255) gtgcgagccatcttccaccctttgaaaTTTGTACt > 1:14962005‑M1/28‑35 (MQ=255) gCAGAAAGCCCGACACGCTCCAGCAGTTTcagggc < 1:1798987‑M1/35‑7 (MQ=255) gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACt < 1:11155362/35‑1 (MQ=255) gCAGAAAGCCCGACACGCTCCAGCAG‑TTTGTACTg > 1:7706441/1‑35 (MQ=38) tgcgagccatcttccaccctttgaaaTTTGTACTg > 1:3780583‑M1/27‑35 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTcagggct > 1:17604265‑M1/1‑28 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTcagggct > 1:8904595‑M1/1‑28 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg < 1:8718421/35‑1 (MQ=255) cAGAAAGCCCGACACGCTACAGCAGTTTTGTACTg < 1:10888713/35‑1 (MQ=255) gcgagccatcttccaccctttgaaaTTTGTACTGc > 1:15954720‑M1/26‑35 (MQ=255) gcgagcaatcttccaccctttgaaaTTTGTACTGc > 1:2571125‑M1/26‑35 (MQ=255) gAAAGCCCGACACGCTCCAGCAGTTTcagggcttt < 1:18055978‑M1/35‑10 (MQ=255) cgagccatcttccaccctttgaaaTTTGTACTGCa < 1:18544468‑M1/11‑1 (MQ=255) cgagccatcttccaccctttgaaaTTTGTACTGCa > 1:4085487‑M1/25‑35 (MQ=255) gagccatcttccaccctttgaaaTTTGTACTGCAc < 1:7460581‑M1/12‑1 (MQ=255) gagccatcttccaccctttgaaaTTTGTACTGCAc < 1:5767806‑M1/12‑1 (MQ=255) gagccatcttccaccctttgaaaTTTGTACTGCAc < 1:1745434‑M1/12‑1 (MQ=255) aaaGCCCGACACGCTCCAGCAGTTTcagggctttt < 1:4141127‑M1/35‑11 (MQ=255) aaaGCCCGACACGCTCCAGCAGTTTcagggctttt < 1:1033279‑M1/35‑11 (MQ=255) aaGCCCGACACGCTCCAGCAGTTTcagggcttttt < 1:4286815‑M1/35‑12 (MQ=255) aaGCCCGACACGCTCCAGCAGTTTTGTACTGGAcc < 1:17837291/35‑1 (MQ=255) gccatcttccaccctttgaaaTTTGTACTGCAccc > 1:2809934‑M1/22‑35 (MQ=255) aGCCCGACACGCTCCAGCAGTTTcagtgctttttc > 1:16567051‑M1/1‑23 (MQ=255) gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa < 1:19682940/35‑1 (MQ=255) ccatcttccaccctttgaaaTTTGTACTGCACCCa < 1:2962519‑M1/15‑1 (MQ=255) catcttccaccctttgaaaTTTGTACTGCACCCAt > 1:4054069‑M1/20‑35 (MQ=255) catcttccaccctttgaaaTTTGTACTGCACCCAt < 1:2166452‑M1/16‑1 (MQ=255) catcttccaccctttgaaaTTTGTACTGCACCCAt > 1:528645‑M1/20‑35 (MQ=255) catcttccaccctttgaaaTTTGTACTGCACCCAt < 1:835056‑M1/16‑1 (MQ=255) ccGACACGCTCCAGCAGTTTTGTACTGCACCCAtt < 1:18748609/35‑1 (MQ=255) ccGACACGCTCCAGAAGTTTcagggctttttcacg < 1:6107851‑M1/35‑16 (MQ=255) cagacACGCTCCAGCAGTTTcagggctttttcacg < 1:17729976‑M1/33‑16 (MQ=255) atcttccaccctttgaaaTTTGTACTGCACCCAtt < 1:4930010‑M1/17‑1 (MQ=255) atcttccaccctttgaaaTTTGTACTGCACCCAtt < 1:10006959‑M1/17‑1 (MQ=255) tcttccaccctttgaaaTTTGTACTGCACCTAttt < 1:5584802‑M1/18‑1 (MQ=255) cGACACGCTCCAGCAGTTTcagggctttttcacga > 1:10531586‑M1/1‑19 (MQ=255) gACACGCTCCAGCAGTTTcagggctttttcacgag < 1:12512290‑M1/35‑18 (MQ=255) gACACGCTCCAGCAGTTTcagggctttttcacgag < 1:6878917‑M1/35‑18 (MQ=255) cttccaccctttgaaaTTTGTACTGCACCCAtttt > 1:14615038‑M1/17‑35 (MQ=255) cttccaccctttgaaaTTTGTACTGCACCCAtttt > 1:18131512‑M1/17‑35 (MQ=255) cttccaccctttgaaaTTTGTACTGCACCCAtttt < 1:3211092‑M1/19‑1 (MQ=255) ttccaccctttgaaaTTTGTACTGCACCCATTttg > 1:6066973‑M1/16‑35 (MQ=255) acacGCTCCAGCAGTTTTGTACTGCACCCATTttg > 1:19098451/1‑35 (MQ=255) tccaccctttgaaaTTTGTACTGCACCCATTttgt > 1:3422454‑M1/15‑35 (MQ=255) tccaccctttgaaaTTTGTACTGCACCCATTttgt < 1:1831097‑M1/21‑1 (MQ=255) cacGCTCCAGCAGTTTcagggctttttcacgagcc > 1:17114661‑M1/1‑16 (MQ=255) cacGCTCCAGCAGTTTTGTACTGCACCCATTttgt > 1:15109388/1‑35 (MQ=255) cacGCTCCAGCAG‑TTTGTACTGCACCCATTttgtt < 1:810392/35‑1 (MQ=21) tcaccctttgaaaTTTGTACTGCACCCATTttgtt < 1:14284545‑M1/22‑1 (MQ=255) ccaccctttgaaaTTTGTACTGCACCCATTttgtt > 1:16350940‑M1/14‑35 (MQ=255) ccaccctttgaaaTTTGTACTGCACCCATTttgtt > 1:3553819‑M1/14‑35 (MQ=255) acGCTCCAGCAGTTTTGTACTGCACCCATTttgtt > 1:17906652/1‑35 (MQ=255) caccctttgaaaTTTGTACTGCACCCATTttgttg > 1:16710471‑M1/13‑35 (MQ=255) gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTgg < 1:4365116/35‑1 (MQ=255) accctttgaaaTTTGTACTGCACCCATTTTGTTgg < 1:19221906‑M1/24‑1 (MQ=255) accctttgaaaTTTGTACTGCACCCATTTTGTTgg > 1:14127314‑M1/12‑35 (MQ=255) accctttgaaaTTTGTACTGCACCCATTTTGTTgg > 1:7998966‑M1/12‑35 (MQ=255) cTCCAGCAGTTTcagggctttttcacgagccggcg > 1:15729134‑M1/1‑12 (MQ=255) cctttgaaaTTTGTACTGCACCCATTTTGTTGGAc > 1:7773074‑M1/10‑35 (MQ=255) ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg > 1:1435591‑M1/9‑35 (MQ=255) ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg < 1:15326868‑M1/27‑1 (MQ=255) ccAGCAGTTTTGTACTGCACCCATTTTGTTGGatg > 1:3881426/1‑33 (MQ=255) ccAGCAGTTTTGTACTGCACCCATTTTGTTGGACg > 1:6589089/1‑35 (MQ=255) ccAGCAGTTTTGTACTGCACCCATTTTGTTGGACg < 1:13297853/35‑1 (MQ=255) tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa < 1:19284547‑M1/28‑1 (MQ=255) tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa < 1:4486104‑M1/28‑1 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt > 1:3003347‑M1/7‑35 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt > 1:10786943‑M1/7‑35 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt > 1:1419831‑M1/7‑35 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt > 1:10083207‑M1/7‑35 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt < 1:6231960‑M1/29‑1 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt < 1:6694722‑M1/29‑1 (MQ=255) tgaaaTTTGTACTGCACCCATTTTGTTGGACGATg < 1:12650597‑M1/30‑1 (MQ=255) tgaaaTTTGTACTGCACCCATTTTGTTGGACGATg < 1:9306884‑M1/30‑1 (MQ=255) tgaaaTTTGTACTGCACCCATTTTGTAGGACGATg < 1:16788433‑M1/30‑1 (MQ=255) gcagTTTTGTACTGCACCCATTTTGTTGGACGATg > 1:12415538/1‑35 (MQ=255) gcagTTTTGTACTGCACCCATTTTGTTGGACGATg > 1:15595098/1‑35 (MQ=255) gaaaTTTGTACTGCACCCATTTTGTTGGACGATGa > 1:7244517‑M1/5‑35 (MQ=255) gaaaTTTGTACTGCACCCATTTTGTTGGACGATGa < 1:14768487‑M1/31‑1 (MQ=255) cagTTTcagggctttttcacgagccggcgctttat > 1:7357921‑M1/1‑6 (MQ=255) aaaTTTGTACTGCACCCATTTTGTTGGACGATGaa > 1:9627609‑M1/4‑35 (MQ=255) gTTTTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:4682050/1‑35 (MQ=38) caTGTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:20114320‑M1/33‑1 (MQ=255) aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:12305354‑M1/33‑1 (MQ=255) aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:14001529‑M1/33‑1 (MQ=255) aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:2048123‑M1/33‑1 (MQ=255) aaCTTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:12069651‑M1/3‑35 (MQ=255) aTTTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:19016687‑M1/2‑35 (MQ=255) aTTTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:7037569‑M1/34‑1 (MQ=255) aTTTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:19526277‑M1/2‑35 (MQ=255) tcagggctttttcacgagccggcgctttatcgcgt > 1:11408631‑M1/1‑1 (MQ=255) | GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGG > REL606/664653‑664721 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |