Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 3,909,807 G→T 100% intergenic (‑40/‑79) hdfR ← / → yifE transcriptional regulator HdfR/hypothetical protein

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,909,8070G→T100.0% 345.7 108intergenic (‑40/‑79)hdfR/yifEtranscriptional regulator HdfR/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (44/64):  ref base (0/0):  total (44/64)

Only 100 of 138 total aligned reads displayed.

TCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAA  >  REL606/3909775‑3909838
                                |                               
tcCGCAAAATTATTTGTCGTTATGATTTAAAtttt                               >  1:19912924/1‑35 (MQ=255)
tcCGCAAAATTATTTGTCGTTATGATTTAAAtttt                               <  1:18142743/35‑1 (MQ=255)
tcCGCAAAATTATTTGTCGTTATGATTTAAAtttt                               >  1:17981884/1‑35 (MQ=255)
tcCGCAAAATTATTTGTCGTTATGATTTAAAtttt                               <  1:15096386/35‑1 (MQ=255)
tcCGCAAAATTATTTGTCGTTATGATTTAAAtttt                               <  1:15055767/35‑1 (MQ=255)
 ccGCAAAATTATTTGTCGTTATGATTTAAAttttt                              <  1:8823019/35‑1 (MQ=255)
 ccGCAAAATTATTTGTCGTTATGATTTAAAttttt                              <  1:18459924/35‑1 (MQ=255)
  cGCAAAATTATTTGTCGTTATGATTTAAAtttttt                             <  1:19659549/35‑1 (MQ=255)
   gCAAAATTATTTGTCGTTATGATTTAAAttttttg                            <  1:17991018/35‑1 (MQ=255)
   gCAAAATTATTTGTCGTTATGATTTAAAttttttg                            >  1:16444777/1‑35 (MQ=255)
   gCAAAATTATTTGTCGTTATGATTTAAAttttttg                            <  1:15613484/35‑1 (MQ=255)
   gCAAAATTATTTGTCGTTATGATTTAAAttttttg                            <  1:74313/35‑1 (MQ=255)
     aaaaTTATTTGTCGTTATGATTTAAAttttttgtt                          >  1:3463275/1‑35 (MQ=255)
     aaaaTTATTTGTCGTTATGATTTAAAttttttgtt                          <  1:2944402/35‑1 (MQ=255)
     aaaaTTATTTGTCGTTATGATTTAAAttttttgtt                          <  1:3722514/35‑1 (MQ=255)
     aaaaTTATTTGTCGTTATGATTTAAAttttttgtt                          <  1:3978976/35‑1 (MQ=255)
     aaaaTTATTTGTCGTTATGATTTAAAttttttgtt                          >  1:13300896/1‑35 (MQ=255)
     aaaaTTATTTGTCGTTATGATTTAAAttttttgtt                          <  1:13188168/35‑1 (MQ=255)
      aaaTTGTTTGTCGTTATGATTTAAAttttttgttt                         <  1:76493/35‑1 (MQ=25)
      aaaTTATTTGTCGTTATGATTTAAAttttttgttt                         <  1:20168371/35‑1 (MQ=255)
      aaaTTATTTGTCGTTATGATTTAAAttttttgttt                         <  1:15508719/35‑1 (MQ=255)
        attattTGTCGTTATGATTTAAATTTTTTGTTTTa                       <  1:952093/35‑1 (MQ=255)
        attattTGTCGTTATGATTTAAATTTTTTGTTTTa                       >  1:11473642/1‑35 (MQ=255)
         ttattTGTCGTTATGATTTAAATTTTTTGTTTTac                      <  1:10383149/35‑1 (MQ=255)
         ttattTGTCGTTATGATTTAAATTTTTTGTTTTac                      <  1:9473791/35‑1 (MQ=255)
         ttattTGTCGTTATGATTTAAATTTTTTGTTTTac                      <  1:846131/35‑1 (MQ=255)
          tattTGTCGTTATGATTTAAATTTTTTGTTTTaca                     <  1:3051568/35‑1 (MQ=255)
          tattTGTCGTTATGATTTAAATTTTTTGTTTTaca                     >  1:2430958/1‑35 (MQ=255)
          tattTGTCGTTATGATTTAAATTTTTTGTTTTaca                     <  1:11127227/35‑1 (MQ=255)
          tattTGTCGTTATGATTTAAATTTTTTGTTTTaca                     <  1:11809383/35‑1 (MQ=255)
          tattTGTCGTTATGATTTAAATTTTTTGTTTTaca                     <  1:13423615/35‑1 (MQ=255)
          tattTGTCGTTATGATTTAAATTTTTTGTTTTaca                     >  1:7576567/1‑35 (MQ=255)
           attTGTCGTTATGATTTAAATTTTTTGTTTTacac                    <  1:3140022/35‑1 (MQ=255)
           attTGTCGTTATGATTTAAATTTTTTGTTTTacac                    >  1:16195705/1‑35 (MQ=255)
           attTGTCGTTATGATTTAAATTTTTTGTTTTacac                    <  1:17345196/35‑1 (MQ=255)
            tttGTCGTTATTATTTAAATTTTTTGTTTTACAct                   >  1:14809416/1‑35 (MQ=25)
            tttGTCGTTATGATTTAAATTTTTTGTTTTACAct                   >  1:16826074/1‑35 (MQ=255)
             ttGTCGTTATGATTTAAATTTTTTGTTTTACActc                  <  1:19648845/35‑1 (MQ=255)
             ttGTCGTTATGATTTAAATTTTTTGTTTTACActc                  <  1:16328201/35‑1 (MQ=255)
             ttGTCGTTATGATTTAAATTTTTTGTTTTACActc                  <  1:11395016/35‑1 (MQ=255)
              tGTCGTTATGATTTAAATTTTTTGTTTTACActct                 <  1:1982283/35‑1 (MQ=255)
              tGTCGTTATGATTTAAATTTTTTGTTTTACActct                 <  1:1818859/35‑1 (MQ=255)
              tGTCGTTATGATTTAAATTTTTTGTTTTACActct                 <  1:4727405/35‑1 (MQ=255)
              tGTCGTTATGATTTAAATTTTTTGTTTTACActct                 <  1:7141029/35‑1 (MQ=255)
              tGTCGTTATGATTTAAATTTTTTGTTTTACActct                 >  1:3020807/1‑35 (MQ=255)
              tGTCGTTATGATTTAAATTTTTTGTTTTACActct                 <  1:8077471/35‑1 (MQ=255)
               gTCGTTATGATTTAAATTTTTTGTTTTACACTCTg                <  1:15310695/35‑1 (MQ=255)
               gTCGTTATGATTTAAATTTTTTGTTTTACACTCTg                <  1:1382099/35‑1 (MQ=255)
               gTCATTATGATTTAAATTTTTTGTTTTACACTCTg                <  1:17960193/35‑1 (MQ=37)
                tCGTTATGATTTAAATTTTTTGTTTTACACTCTGt               <  1:7957104/35‑1 (MQ=255)
                tCGTTATGATTTAAATTTTTTGTTTTACACTCTGt               >  1:15539950/1‑35 (MQ=255)
                tCGTTATGATTTAAATTTTTTGTTTTACACTCTGt               >  1:17491851/1‑35 (MQ=255)
                tCGTTATGATTTAAATTTTTTGTTTTACACTCTGt               >  1:18958973/1‑35 (MQ=255)
                tCGTTATGATTTAAATTTTTTGTTTTACACTCTGt               <  1:6339044/35‑1 (MQ=255)
                 cGTTATGATTTAAATTTTTTGTTTTACACTCTggc              >  1:20062162/1‑33 (MQ=37)
                 cGTTATGATTTAAATTTTTTGTTTTACACTCTGTc              >  1:13970373/1‑35 (MQ=255)
                 cGTTATGATTTAAATTTTTTGTTTTACACTCTGTc              <  1:9765021/35‑1 (MQ=255)
                  gTTATGATTTAAATTTTTTGTTTTACACTCTGTCa             <  1:11735710/35‑1 (MQ=255)
                  gTTATGATTTAAATTTTTTGTTTTACACTCTGTCa             <  1:158499/35‑1 (MQ=255)
                  gTTATGATTTAAATTTTTTGTTTTACACTCTGGCa             >  1:16818426/1‑35 (MQ=37)
                  gTTATGATTTAAATTTTTTGTTTTAAACTCTGTCa             <  1:4490052/35‑1 (MQ=37)
                   ttATGATTTAAATTTTTTGTTTTACACTCTGTCaa            <  1:19934500/35‑1 (MQ=255)
                   ttATGATTTAAATTTTTTGTTTTACACTCTGTCaa            <  1:183445/35‑1 (MQ=255)
                   ttATGATTTAAATTTTTTGTTTTACACTCTGTCaa            >  1:12134547/1‑35 (MQ=255)
                   ttATGATTTAAATTTTTTGTTTTACACTCTGTCaa            >  1:7605296/1‑35 (MQ=255)
                   ttATGATTTAAATTTTTTGTTTTACACTCTGTCaa            <  1:5993140/35‑1 (MQ=255)
                    tATGATTTAAATTTTTTGTTTTACACTCTGTCAAg           <  1:6793554/35‑1 (MQ=255)
                    tATGATTTAAATTTTTTGTTTTACACTCTGTCAAg           >  1:3790638/1‑35 (MQ=255)
                    tATGATTTAAATTTTTTGTTTTACACTCTGTCAAg           >  1:5831203/1‑35 (MQ=255)
                    tATGATTTAAATTTTTTGTTTTACACTCTGTCAAg           >  1:9980072/1‑35 (MQ=255)
                    tATGATTTAAATTTTTTGTTTTACACTCTGTCAAg           >  1:10396745/1‑35 (MQ=255)
                    tATGATTTAAATTTTTTGTTTTACACTCTGTCAAg           >  1:13898689/1‑35 (MQ=255)
                    tATGATTTAAATTTTTTGTTTTACACTCTGTCAAg           >  1:14789680/1‑35 (MQ=255)
                    tATGATTTAAATTTTTTGTTTTACACTCTGTCAAg           >  1:15836254/1‑35 (MQ=255)
                    tATGATTTAAATTTTTTGTTTTACACTCTGTCAAg           <  1:17318968/35‑1 (MQ=255)
                    tATGATTTAAATTTTTTGTTTTACACTCTGTCAAg           <  1:3646950/35‑1 (MQ=255)
                    tATGATTTAAATTTTTTGTTTTACACTCTGTCAAg           <  1:20118589/35‑1 (MQ=255)
                    tATGATTTAAATTTTTTGTTTTACAATCTGTCAAg           <  1:5502983/35‑1 (MQ=37)
                     aTGATTTAAATTTTTTGTTTTACACTCTGTCAAGc          <  1:18097947/35‑1 (MQ=255)
                     aTGATTTAAATTTTTTGTTTTACACTCTGTCAAGc          >  1:12525474/1‑35 (MQ=255)
                      tGATTTAAATTTTTTGTTTTACACTCTGTCAAGCg         >  1:9668578/1‑35 (MQ=255)
                      tGATTTAAATTTTTTGTTTTACACTCTGTCAAGCg         <  1:18895747/35‑1 (MQ=255)
                       gATTTAAATTTTTTGTTTTACACTCTGTCAAGCGt        <  1:15793305/35‑1 (MQ=255)
                       gATTTAAATTTTTTGTTTTACACTCTGTCAAGCGt        >  1:5185787/1‑35 (MQ=255)
                       gATTTAAATTTTTTGTTTTACACTCTGTCAAGCGt        <  1:20498762/35‑1 (MQ=255)
                       gATTTAAATTTTTTGTTTTACACTCTGTCAAGCGt        <  1:13362483/35‑1 (MQ=255)
                       gATTTAAATTTTTTGTTTTACACTCTGTCAAGCGt        <  1:4942492/35‑1 (MQ=255)
                       gATTTAAATTTTTTGTTTTACACTCTGTCAAGCGt        <  1:11874633/35‑1 (MQ=255)
                        aTTTAAATTTTTTGTTTTACACTCTGTCAAGGGTa       >  1:20080717/1‑35 (MQ=37)
                         tttAAATTTTTTGTTTTACACTCTGTCAAGCGTaa      <  1:20611998/35‑1 (MQ=255)
                         tttAAATTTTTTGTTTTACACTCTGGCAAGCGTaa      >  1:8282355/1‑35 (MQ=37)
                          ttAAATTTTTTGTTTTACACTCTGTCAAGCGTAAc     >  1:15683347/1‑35 (MQ=255)
                          ttAAATTTTTTGTTTTACACTCTGTCAAGCGTAAc     >  1:13050482/1‑35 (MQ=255)
                           tAAATTTTTTGTTTTACACTCTGTCAAGCGTAACt    >  1:4351907/1‑35 (MQ=255)
                           tAAATTTTTTGTTTTACACTCTGTCAAGCGTAACt    >  1:4047811/1‑35 (MQ=255)
                           tAAATTTTTTGTTTTACACTCTGTCAAGCGTAACt    <  1:20158543/35‑1 (MQ=255)
                           tAAATTTTTTGTTTTACACTCTGTCAAGCGTAACt    <  1:195511/35‑1 (MQ=255)
                             aaTTTTTTGTTTTACACTCTGTCAAGCGTAACTaa  <  1:6765389/35‑1 (MQ=255)
                             aaTTTTTTGTTTTACACTCTGTCAAGCGTAACTaa  >  1:11640931/1‑35 (MQ=255)
                             aaTTTTTTGTTTTACACTCTGTCAAGCGTAACTaa  >  1:1006557/1‑35 (MQ=255)
                                |                               
TCCGCAAAATTATTTGTCGTTATGATTTAAATGTTTTGTTTTACACTCTGTCAAGCGTAACTAA  >  REL606/3909775‑3909838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.