New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1286707 = | 97 (0.940) | 9 (0.110) | 4/38 | NT | 10.5% | intergenic (+31/‑152) | narI/ECB_01206 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein |
? | REL606 | = 1424360 | NA (NA) | coding (192/294 nt) | ECB_01344 | conserved hypothetical protein |
GCGAATGAATATGCCGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGATGTGGCAA > REL606/1424339‑1424394 | gCGAATGAATATGCCGTGGTGGGGCGGTTTTGATc < 1:10842861/35‑1 (MQ=32) gCGAATGAATATGCCGTGGTGGGGCGGTTTTGATc < 1:8608400/35‑1 (MQ=32) gCGAATGAATATGCCGTGGTGGGGCGGTTTTGATc < 1:6075420/35‑1 (MQ=32) cGAATGAATATGCCGTGGTGGGGCGGTTTTGATcc < 1:11046730/35‑1 (MQ=35) cGAATGAATATGCCGTGGTGGGGCGGTTTTGATcc < 1:7634959/35‑1 (MQ=35) cGAATGAATATGCCGTGGTGGGGCGGTTTTGATcc < 1:19543297/35‑1 (MQ=35) gaatgaatATGCCGTGGTGGGGCGGTTTTGATCcg < 1:6599911/35‑1 (MQ=38) gaatgaatATGCCGTGGTGGGGCGGTTTTGATCcg < 1:4196077/35‑1 (MQ=38) gaatgaatATGCCGTGGTGGGGCGGTTTTGATCcg < 1:2958063/35‑1 (MQ=38) gaatgaatATGCCGTGGTGGGGCCGTTTTGATCcg < 1:17055159/35‑1 (MQ=255) aatgaatATGCCGTGGTGGGGCGGTTTTGATCcgc < 1:9969207/35‑1 (MQ=40) aatgaatATGCCGTGGTGGGGCGGTTTTGATCcgc < 1:14427526/35‑1 (MQ=40) atgaatATGCCGTGGTGGGGCGGTTTTGATCcgcg < 1:5346342/35‑1 (MQ=255) atgaatATGCCGTGGTGGGGCGGTTTTGATCcgcg < 1:19910302/35‑1 (MQ=255) tgaatATGCCGTTGTGGGGCGGTTTTGATCcgcgc < 1:10511965/35‑1 (MQ=255) tgaatATGCCGTGGTGGGGCGGTTTTGATCcgcgc < 1:8618240/35‑1 (MQ=255) tgaatATGCCGTGGTGGGGCGGTTTTGATCcgcgc < 1:20240456/35‑1 (MQ=255) aatATGCCGTGGTGGGGCGGTTTTGATCcgcgcgc < 1:13340553/35‑1 (MQ=255) aatATGCCGTGGTGGGGCGGTTTTGATCcgcgcgc < 1:20613811/35‑1 (MQ=255) atGCCGTGGTGGGGCGGTTTTGATACGCGCGCGTg < 1:1303388/35‑1 (MQ=255) atGCCGTGGTGGGGCGGTTTTGATACGCGCGCGTg < 1:18671125/35‑1 (MQ=255) tGCCGTGGTGGGGCGGTTTTGATCCGCGCGCGTgg < 1:3439339/35‑1 (MQ=255) tGCCGTGGTGGGGCGGTTTTGATCCGCGCGCGTgg < 1:9784779/35‑1 (MQ=255) gCCGTGGTGGGGCGGTTTTGATCCGCGCGCGTggg < 1:668029/35‑1 (MQ=255) ccGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGa < 1:20222223/35‑1 (MQ=255) cGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGAt < 1:1343736/35‑1 (MQ=255) cGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGAt < 1:8555468/35‑1 (MQ=255) cGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGAt < 1:11411109/35‑1 (MQ=255) gtggtgGGGCGGTTTTGATCCGCGCGCGTGGGAtg < 1:1709966/35‑1 (MQ=255) tggttgGGCGGTTTTTATCCGCGCGCGTGGGAtgt > 1:13375085/1‑35 (MQ=21) tggtggGGCGGTTTTGATCAGCGCGCGTGGGAtgt < 1:11933655/35‑1 (MQ=255) ggtggGGCGGTTTTGATCCGCGCGCGTGGGAtgtg < 1:13274161/35‑1 (MQ=255) ggtggGGCGGTTTTGATCCGCGCGCGTGGGAtgtg < 1:19727866/35‑1 (MQ=255) ggtggGGCGGTTTTGATCCGCGCGCGTGGGAtgtg < 1:9175902/35‑1 (MQ=255) tggGGCGGTTTTGATCCGCGCGCGTGGGATGTGGc < 1:18291649/35‑1 (MQ=255) ggggCGGTTTTGATCCGCGCGAGTGGGATGTGGCa < 1:20449654/35‑1 (MQ=255) gggCGGTTTTGATCCGCGCGCGTGGGATGTGGCaa < 1:7015570/35‑1 (MQ=255) gggCGGTTTTGATCCGCGCGCGTGGGATGTGGCaa < 1:6692303/35‑1 (MQ=255) | GCGAATGAATATGCCGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGATGTGGCAA > REL606/1424339‑1424394 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |