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breseq version 0.26.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | ||||||
---|---|---|---|---|---|---|
evidence | position | mutation | freq | annotation | gene | description |
RA | 9,972 | T→G | 40.1% | N174T (AAC→ACC) | yaaH ← | conserved inner membrane protein associated with acetate transport |
JC JC | 16,990 | IS150 (+) +3 bp | 100% | intergenic (‑32/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
RA | 200,540 | C→T | 5.9% | L385F (CTT→TTT) | yaeL → | zinc metallopeptidase |
RA | 281,923 | G→T | 93.3% | intergenic (‑406/‑369) | ykgK ← / → ykgL | predicted regulator/hypothetical protein |
RA | 473,901 | +C | 46.7% | coding (1405/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
RA | 473,901 | +G | 46.7% | coding (1405/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
JC JC | 546,191 | IS1 (+) +9 bp | 100% | coding (346‑354/384 nt) | ybcQ → | predicted antitermination protein |
MC JC | 547,700 | Δ2,651 bp | 100% | IS1‑mediated | [nmpC]–[ybcU] | [nmpC], ybcR, ybcS, ybcT, [ybcU] |
JC JC | 643,362 | IS150 (+) +3 bp | 43.3% | coding (598‑600/954 nt) | ybeF ← | predicted DNA‑binding transcriptional regulator |
RA | 648,692 | C→T | 100% | R69H (CGC→CAC) | mrdB ← | cell wall shape‑determining protein |
RA | 737,252 | C→A | 4.2% | I185I (ATC→ATA) | sdhA → | succinate dehydrogenase flavoprotein subunit |
JC JC | 1,162,790 | IS150 (–) +3 bp | 41.7% | coding (601‑603/1071 nt) | plsX → | fatty acid/phospholipid synthesis protein |
RA | 1,331,794 | C→A | 100% | T792K (ACG→AAG) | topA → | DNA topoisomerase I |
JC JC | 1,420,709 | +GA :: IS3 (+) +4 bp | 14.6% | intergenic (+21/‑9) | ynaK → / → ECB_01341 | conserved protein/hypothetical protein |
JC JC | 1,462,320 | IS150 (–) +3 bp | 90.4% | intergenic (‑82/‑257) | mokB ← / → trg | regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
RA | 1,607,916 | Δ1 bp | 36.1% | coding (17/1320 nt) | ECB_01510 ← | putative tail component of prophage |
JC JC | 1,648,342 | IS1 (–) +9 bp | 28.2% | intergenic (+195/‑221) | ynfM → / → asr | predicted transporter/acid shock protein precursor |
RA | 1,691,510 | G→A | 36.0% | intergenic (+45/‑61) | ydgR → / → gst | putative tripeptide transporter permease/glutathionine S‑transferase |
RA | 1,733,343 | G→A | 100% | D127N (GAT→AAT) | pykF → | pyruvate kinase |
JC JC | 1,776,434 | IS150 (–) +4 bp | 56.9% | intergenic (‑225/+56) | pheS ← / ← pheM | phenylalanyl‑tRNA synthetase alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
RA | 1,805,203 | C→A | 14.0% | V108L (GTA→TTA) | astB ← | succinylarginine dihydrolase |
JC JC | 2,122,426 | IS150 (–) +3 bp | 46.2% | coding (198‑200/216 nt) | ECB_02013 ← | conserved hypothetical protein; putative exported protein |
RA | 2,333,538 | +T | 100% | intergenic (+34/+34) | ECB_02200 → / ← nuoN | YadA protein/NADH dehydrogenase subunit N |
RA | 2,446,984 | A→C | 100% | intergenic (‑53/‑283) | mntH ← / → nupC | manganese transport protein MntH/nucleoside (except guanosine) transporter |
JC JC | 2,448,493 | IS186 (+) +6 bp | 66.5% | intergenic (+24/+21) | nupC → / ← yfeA | nucleoside (except guanosine) transporter/predicted diguanylate cyclase |
RA | 2,665,639 | A→T | 92.4% | L100Q (CTG→CAG) | rplS ← | 50S ribosomal protein L19 |
RA | 2,999,330 | G→A | 100% | intergenic (+138/‑234) | yeeP → / → flu | b1999; predicted GTP‑binding protein/antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
JC JC | 3,015,771 | IS150 (–) +3 bp | 97.6% | coding (1192‑1194/1677 nt) | ECB_02816 → | KpsD protein |
RA | 3,152,406 | A→C | 21.7% | K41N (AAA→AAC) | ygjG → | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
RA | 3,183,348 | G→A | 32.6% | G80S (GGC→AGC) | yqjK → | hypothetical protein |
RA | 3,249,829 | C→A | 7.2% | G474C (GGT→TGT) | infB ← | translation initiation factor IF‑2 |
JC JC | 3,268,052 | IS150 (+) +3 bp | 55.8% | intergenic (‑83/+42) | yhbE ← / ← rpmA | conserved inner membrane protein/50S ribosomal protein L27 |
RA | 3,339,313 | A→C | 100% | Y51S (TAT→TCT) | fis → | DNA‑binding protein Fis |
RA | 3,401,754 | C→A | 100% | R78L (CGC→CTC) | rpsG ← | 30S ribosomal protein S7 |
JC JC | 3,454,489 | IS150 (+) +4 bp | 38.1% | coding (342‑345/561 nt) | yrfE ← | ADP‑ribose diphosphatase |
RA | 3,463,900 | C→T | 48.4% | R218H (CGC→CAC) | envZ ← | osmolarity sensor protein |
RA | 3,475,057 | C→T | 36.6% | intergenic (+193/‑168) | yhgI → / → gntT | predicted gluconate transport associated protein/gluconate transporter, high‑affinity GNT I system |
RA | 3,481,820 | A→G | 100% | T46A (ACC→GCC) | malT → | transcriptional regulator MalT |
RA | 3,488,669 | A→C | 47.7% | S180A (TCG→GCG) | glpR ← | DNA‑binding transcriptional repressor |
JC JC | 3,517,306 | IS186 (+) +8 bp :: Δ2 | 56.2% | coding (187‑194/1743 nt) | ggt ← | gamma‑glutamyltranspeptidase periplasmic precursor |
RA | 3,670,539 | A→C | 3.6% | K127Q (AAA→CAA) | avtA → | valine‑pyruvate transaminase |
RA | 3,893,550 | Δ1 bp | 29.5% | intergenic (+5/‑51) | kup → / → insJ‑5 | potassium transporter/IS150 hypothetical protein |
RA | 3,893,550 | +G | 4.7% | intergenic (+5/‑51) | kup → / → insJ‑5 | potassium transporter/IS150 hypothetical protein |
MC JC | 3,894,997 | Δ6,460 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
RA | 3,909,807 | G→T | 100% | intergenic (‑40/‑79) | hdfR ← / → yifE | transcriptional regulator HdfR/hypothetical protein |
RA | 4,100,183 | A→G | 100% | S350P (TCT→CCT) | hslU ← | ATP‑dependent protease ATP‑binding subunit |
RA | 4,107,018 | T→A | 48.2% | P123P (CCA→CCT) | ECB_03822 ← | putative outer membrane lipoprotein |
JC JC | 4,110,237 | IS150 (–) +3 bp | 100% | coding (296‑298/2433 nt) | metL → | bifunctional aspartate kinase II/homoserine dehydrogenase II |
RA | 4,111,342 | C→T | 48.3% | G467G (GGC→GGT) | metL → | bifunctional aspartate kinase II/homoserine dehydrogenase II |
RA | 4,201,958 | A→C | 46.0% | L201R (CTC→CGC) | iclR ← | DNA‑binding transcriptional repressor |
RA | 4,202,088 | C→T | 5.0% | A158T (GCT→ACT) | iclR ← | DNA‑binding transcriptional repressor |
RA | 4,335,105 | C→A | 9.5% | A9A (GCG→GCT) | yjdL ← | predicted transporter |
RA | 4,363,338 | C→A | 11.5% | G263G (GGC→GGA) | yjeM → | predicted transporter |
RA | 4,431,394 | Δ2 bp | 100% | coding (3526‑3527/3780 nt) | ytfN → | hypothetical protein |
JC JC | 4,524,522 | IS186 (+) +6 bp | 94.5% | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
RA | 4,606,814 | G→A | 3.7% | A86A (GCG→GCA) | deoC → | deoxyribose‑phosphate aldolase |
JC JC | 4,613,019 | +TT :: IS150 (+) | 100% | intergenic (‑16/‑91) | smp ← / → serB | hypothetical protein/3‑phosphoserine phosphatase |
RA | 4,616,538 | A→C | 94.2% | Y337S (TAC→TCC) | nadR → | nicotinamide‑nucleotide adenylyltransferase |
RA | 4,621,349 | C→A | 5.8% | intergenic (+50/+35) | trpR → / ← yjjX | Trp operon repressor/NTPase |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 1270058–1270154 | 1270659–1270418 | 265–602 | 49 [45] | [1] 171 | ldrC | ldrC |
* | * | ÷ | REL606 | 4017655–4017755 | 4017997–4017764 | 10–343 | 52 [41] | [46] 52 | rrlA | 23S ribosomal RNA |
Unassigned new junction evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 9903 | 115 (1.120) | 22 (0.220) | 8/46 | NT | 23.0% | intergenic (+12/+23) | mogA/yaaH | molybdenum cofactor biosynthesis protein/conserved inner membrane protein associated with acetate transport |
? | REL606 | = 1095351 | 37 (0.380) | intergenic (‑185/‑238) | putA/putP | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase/proline:sodium symporter | |||||
* | ? | REL606 | = 9904 | 112 (1.090) | 9 (0.100) | 5/42 | NT | 11.5% | intergenic (+13/+22) | mogA/yaaH | molybdenum cofactor biosynthesis protein/conserved inner membrane protein associated with acetate transport |
? | REL606 | 4001993 = | 40 (0.440) | intergenic (+10/‑32) | tatC/tatD | TatABCE protein translocation system subunit/DNase, magnesium‑dependent | |||||
* | ? | REL606 | 10617 = | 104 (1.010) | 21 (0.220) | 7/44 | NT | 21.3% | intergenic (‑125/+24) | yaaH/yaaW | conserved inner membrane protein associated with acetate transport/hypothetical protein |
? | REL606 | = 3622975 | 60 (0.640) | coding (1754/2619 nt) | yhjO | cellulose synthase, catalytic subunit | |||||
* | ? | REL606 | 13453 = | 80 (0.780) | 8 (0.080) | 4/44 | NT | 10.6% | coding (1293/1917 nt) | dnaK | molecular chaperone DnaK |
? | REL606 | 348289 = | 62 (0.660) | coding (475/1212 nt) | mhpT | predicted 3‑hydroxyphenylpropionic transporter | |||||
* | ? | REL606 | 32485 = | 59 (0.570) | 7 (0.070) | 6/46 | NT | 12.4% | coding (40/822 nt) | dapB | dihydrodipicolinate reductase |
? | REL606 | = 671859 | 42 (0.430) | coding (1118/1539 nt) | lnt | apolipoprotein N‑acyltransferase | |||||
* | ? | REL606 | = 42237 | 147 (1.430) | 9 (0.100) | 4/42 | NT | 5.9% | pseudogene (740/885 nt) | caiB | crotonobetainyl‑CoA:carnitineCoA‑transferase; b0038_1 |
? | REL606 | 2742547 = | 160 (1.780) | coding (1555/1827 nt) | hycC | NADH dehydrogenase subunit N | |||||
* | ? | REL606 | = 47987 | 85 (0.830) | 13 (0.280) | 4/22 | NT | 25.8% | coding (605/942 nt) | fixB | predicted electron transfer flavoprotein, NAD/FAD‑binding domain and ETFP adenine nucleotide‑binding domain‑like |
? | REL606 | 1306336 = | 36 (0.760) | intergenic (‑97/+274) | cls/kch | cardiolipin synthetase/voltage‑gated potassium channel | |||||
* | ? | REL606 | = 50078 | 64 (0.620) | 8 (0.100) | 3/38 | NT | 17.8% | coding (77/1332 nt) | yaaU | predicted transporter |
? | REL606 | 558256 = | 23 (0.280) | coding (193/294 nt) | ECB_00516 | conserved hypothetical protein | |||||
* | ? | REL606 | 76423 = | 43 (0.420) | 4 (0.050) | 3/36 | NT | 7.3% | coding (903/1611 nt) | thiP | thiamin ABC transporter membrane protein |
? | REL606 | = 3891004 | 69 (0.900) | coding (451/1497 nt) | yieN | fused predicted transcriptional regulator: sigma54 activator protein/conserved protein | |||||
* | ? | REL606 | 82013 = | 70 (0.680) | 10 (0.160) | 3/30 | NT | 19.5% | coding (245/606 nt) | leuD | isopropylmalate isomerase small subunit |
? | REL606 | 3792209 = | 39 (0.610) | coding (315/414 nt) | ECB_03532 | hypothetical protein | |||||
* | ? | REL606 | = 108685 | 72 (0.700) | 24 (0.310) | 8/36 | NT | 29.3% | coding (577/1152 nt) | ftsZ | cell division protein FtsZ |
? | REL606 | = 2243652 | 62 (0.800) | coding (1242/1944 nt) | ccmF | heme lyase, CcmF subunit | |||||
* | ? | REL606 | 114196 = | 59 (0.570) | 12 (0.130) | 3/42 | NT | 17.6% | coding (349/390 nt) | mutT | nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP |
? | REL606 | 422596 = | 61 (0.680) | intergenic (‑283/+179) | cyoA/ampG | cytochrome o ubiquinol oxidase subunit II/muropeptide transporter | |||||
* | ? | REL606 | 140702 = | 57 (0.550) | 10 (0.130) | 3/36 | NT | 18.6% | coding (817/1551 nt) | cueO | multicopper oxidase (laccase) |
? | REL606 | 1349560 = | 45 (0.580) | intergenic (‑152/+216) | fabI/ycjD | enoyl‑(acyl carrier protein) reductase/hypothetical protein | |||||
* | ? | REL606 | 180751 = | 70 (0.680) | 8 (0.080) | 5/46 | NT | 13.4% | coding (554/801 nt) | yadT | vitamin B12‑transporter protein BtuF |
? | REL606 | 3966540 = | 36 (0.370) | intergenic (‑56/‑97) | ECB_03694/ECB_03695 | conserved hypothetical protein/Magnesium and cobalt transport protein corA | |||||
* | ? | REL606 | 187382 = | 110 (1.070) | 13 (0.150) | 3/40 | NT | 14.9% | coding (530/813 nt) | yaeI | predicted phosphatase |
? | REL606 | 3669194 = | 57 (0.670) | coding (1242/2031 nt) | malS | periplasmic alpha‑amylase precursor | |||||
* | ? | REL606 | 197679 = | 131 (1.270) | 16 (0.200) | 5/38 | NT | 15.6% | intergenic (+120/‑66) | ispC/uppS | 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase/undecaprenyl pyrophosphate synthase |
? | REL606 | 2304413 = | 69 (0.850) | coding (802/903 nt) | yfaD | hypothetical protein | |||||
* | ? | REL606 | 207313 = | 39 (0.380) | 6 (0.060) | 3/44 | NT | 6.9% | coding (1124/1149 nt) | lpxB | lipid‑A‑disaccharide synthase |
? | REL606 | 1513006 = | 126 (1.340) | coding (3736/3741 nt) | narZ | nitrate reductase 2 (NRZ), alpha subunit | |||||
* | ? | REL606 | 212468 = | 63 (0.610) | 18 (0.200) | 5/42 | NT | 18.6% | intergenic (+46/‑53) | accA/ldcC | acetyl‑CoA carboxylase subunit alpha/lysine decarboxylase 2, constitutive |
? | REL606 | 235476 = | 117 (1.140) | intergenic (+3/+45) | yafE/mltD | predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase/predicted membrane‑bound lytic murein transglycosylase D | |||||
* | ? | REL606 | = 218779 | 70 (0.680) | 12 (0.160) | 4/36 | NT | 15.1% | coding (669/711 nt) | cutF | lipoprotein involved with copper homeostasis and adhesion |
? | REL606 | 4525951 = | 82 (1.060) | intergenic (+8/‑59) | fimC/fimD | chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis | |||||
* | ? | REL606 | 223959 = | 46 (0.450) | 15 (0.180) | 4/38 | NT | 24.3% | coding (503/654 nt) | metI | DL‑methionine transporter subunit |
? | REL606 | 1306336 = | 57 (0.700) | intergenic (‑97/+274) | cls/kch | cardiolipin synthetase/voltage‑gated potassium channel | |||||
* | ? | REL606 | 225795 = | 119 (1.160) | 11 (0.130) | 3/40 | NT | 13.7% | coding (123/573 nt) | gmhB | hypothetical protein |
? | REL606 | 2126049 = | 40 (0.470) | coding (187/1041 nt) | gatD | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding | |||||
* | ? | REL606 | = 246042 | 115 (1.120) | 8 (0.080) | 5/44 | NT | 10.0% | coding (1833/2445 nt) | fadE | acyl‑CoA dehydrogenase |
? | REL606 | 503801 = | 39 (0.410) | coding (587/927 nt) | ybbS | DNA‑binding transcriptional activator of the allD operon | |||||
* | ? | REL606 | 255937 = | 63 (0.610) | 13 (0.150) | 7/40 | NT | 22.5% | coding (477/1056 nt) | dinB | DNA polymerase IV |
? | REL606 | 3367494 = | 37 (0.430) | intergenic (‑80/+27) | yhdN/rplQ | hypothetical protein/50S ribosomal protein L17 | |||||
* | ? | REL606 | = 256933 | 70 (0.680) | 10 (0.130) | 4/36 | NT | 13.6% | coding (70/399 nt) | yafO | predicted toxin of the YafO‑YafN toxin‑antitoxin system |
? | REL606 | 3944634 = | 75 (0.970) | intergenic (+23/‑124) | proM/aslB | tRNA‑Pro/predicted regulator of arylsulfatase activity | |||||
* | ? | REL606 | = 280732 | 59 (0.570) | 9 (0.120) | 3/36 | NT | 14.3% | coding (170/636 nt) | yagZ | hypothetical protein |
? | REL606 | 3006460 = | 64 (0.830) | coding (470/819 nt) | yafZ | conserved protein | |||||
* | ? | REL606 | 285065 = | 85 (0.830) | 8 (0.120) | 3/30 | NT | 14.3% | coding (529/4257 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
? | REL606 | = 3978905 | 43 (0.670) | coding (1426/2262 nt) | metE | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine methyltransferase | |||||
* | ? | REL606 | = 293548 | 72 (0.700) | 8 (0.090) | 5/42 | NT | 9.4% | coding (673/855 nt) | ykgD | predicted DNA‑binding transcriptional regulator |
? | REL606 | 2499664 = | 92 (1.020) | coding (171/951 nt) | talA | transaldolase A | |||||
* | ? | REL606 | 293737 = | 51 (0.500) | 8 (0.090) | 4/40 | NT | 11.3% | intergenic (+7/‑520) | ykgD/ykgE | predicted DNA‑binding transcriptional regulator/predicted oxidoreductase |
? | REL606 | = 1036069 | 83 (0.970) | intergenic (+41/+35) | ycbG/ompA | hypothetical protein/outer membrane protein A (3a;II*;G;d) | |||||
* | ? | REL606 | 294203 = | 75 (0.730) | 12 (0.160) | 3/36 | NT | 18.3% | intergenic (+473/‑54) | ykgD/ykgE | predicted DNA‑binding transcriptional regulator/predicted oxidoreductase |
? | REL606 | 836230 = | 51 (0.660) | coding (1876/2226 nt) | ybiO | predicted mechanosensitive channel | |||||
* | ? | REL606 | 294204 = | 76 (0.740) | 6 (0.070) | 3/38 | NT | 10.8% | intergenic (+474/‑53) | ykgD/ykgE | predicted DNA‑binding transcriptional regulator/predicted oxidoreductase |
? | REL606 | = 2574914 | 39 (0.480) | intergenic (+756/+62) | sseA/sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate | |||||
* | ? | REL606 | 312869 = | 100 (0.970) | 13 (0.150) | 6/40 | NT | 13.5% | coding (56/951 nt) | yahI | predicted carbamate kinase‑like protein |
? | REL606 | 4351443 = | 83 (0.970) | intergenic (+51/‑87) | groEL/yjeI | chaperonin GroEL/hypothetical protein | |||||
* | ? | REL606 | = 313085 | 24 (0.230) | 4 (0.040) | 3/48 | NT | 6.4% | coding (272/951 nt) | yahI | predicted carbamate kinase‑like protein |
? | REL606 | = 661462 | 93 (0.910) | intergenic (+13/+47) | ybeV/hscC | Hsc56 co‑chaperone of HscC/Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription | |||||
* | ? | REL606 | 326204 = | 101 (0.980) | 10 (0.130) | 4/36 | NT | 14.1% | coding (849/1887 nt) | prpE | predicted propionyl‑CoA synthetase with ATPase domain |
? | REL606 | = 4116137 | 46 (0.600) | intergenic (+15/‑78) | katG/yijE | catalase/hydroperoxidase HPI(I)/predicted permease | |||||
* | ? | REL606 | 326209 = | 90 (0.880) | 5 (0.050) | 3/46 | NT | 7.2% | coding (854/1887 nt) | prpE | predicted propionyl‑CoA synthetase with ATPase domain |
? | REL606 | 3368427 = | 42 (0.430) | coding (508/990 nt) | rpoA | DNA‑directed RNA polymerase subunit alpha | |||||
* | ? | REL606 | 327441 = | 112 (1.090) | 14 (0.140) | 5/48 | NT | 14.4% | intergenic (+199/‑37) | prpE/codB | predicted propionyl‑CoA synthetase with ATPase domain/cytosine transporter |
? | REL606 | 1238616 = | 54 (0.530) | coding (896/1299 nt) | dadA | D‑amino acid dehydrogenase small subunit | |||||
* | ? | REL606 | = 357810 | 79 (0.770) | 3 (0.040) | 3/36 | NT | 3.8% | coding (826/975 nt) | hemB | delta‑aminolevulinic acid dehydratase |
? | REL606 | = 357826 | 94 (1.220) | coding (810/975 nt) | hemB | delta‑aminolevulinic acid dehydratase | |||||
* | ? | REL606 | 365501 = | 115 (1.120) | 5 (0.060) | 3/40 | NT | 6.1% | coding (1217/1221 nt) | sbmA | predicted transporter |
? | REL606 | = 3726074 | 57 (0.670) | coding (49/1545 nt) | yibO | phosphoglyceromutase | |||||
* | ? | REL606 | 370831 = | 66 (0.640) | 3 (0.050) | 3/28 | NT | 8.4% | intergenic (+23/‑96) | phoA/psiF | bacterial alkaline phosphatase/hypothetical protein |
? | REL606 | 4533970 = | 27 (0.450) | coding (156/1461 nt) | uxuB | D‑mannonate oxidoreductase, NAD‑binding | |||||
* | ? | REL606 | = 389983 | 64 (0.620) | 8 (0.100) | 5/36 | NT | 10.3% | coding (575/1374 nt) | proY | predicted cryptic proline transporter |
? | REL606 | = 3813056 | 92 (1.190) | intergenic (‑137/‑797) | ivbL/emrD | ilvB operon leader peptide/multidrug efflux system protein | |||||
* | ? | REL606 | 411751 = | 19 (0.180) | 8 (0.080) | 3/44 | NT | 12.3% | coding (313/591 nt) | thiJ | hypothetical protein |
? | REL606 | = 1138232 | 97 (1.030) | coding (395/648 nt) | grxB | glutaredoxin 2 (Grx2) | |||||
* | ? | REL606 | 413197 = | 80 (0.780) | 16 (0.210) | 3/36 | NT | 19.4% | coding (93/492 nt) | yajQ | nucleotide‑binding protein |
? | REL606 | 3219746 = | 73 (0.950) | coding (344/477 nt) | agaB | N‑acetylgalactosamine‑specific enzyme IIB component of PTS | |||||
* | ? | REL606 | 422127 = | 69 (0.670) | 8 (0.120) | 4/32 | NT | 15.8% | coding (187/948 nt) | cyoA | cytochrome o ubiquinol oxidase subunit II |
? | REL606 | 4480474 = | 39 (0.570) | coding (497/1191 nt) | intB | predicted integrase | |||||
* | ? | REL606 | 422590 = | 83 (0.810) | 4 (0.040) | 4/46 | NT | 6.1% | intergenic (‑277/+185) | cyoA/ampG | cytochrome o ubiquinol oxidase subunit II/muropeptide transporter |
? | REL606 | 801538 = | 45 (0.440) | coding (346/1290 nt) | bioA | adenosylmethionine‑8‑amino‑7‑oxononanoate transaminase | |||||
* | ? | REL606 | 422591 = | 80 (0.780) | 12 (0.150) | 3/38 | NT | 17.9% | intergenic (‑278/+184) | cyoA/ampG | cytochrome o ubiquinol oxidase subunit II/muropeptide transporter |
? | REL606 | = 2605528 | 47 (0.580) | coding (679/1254 nt) | glyA | serine hydroxymethyltransferase | |||||
* | ? | REL606 | 422591 = | 80 (0.780) | 9 (0.110) | 4/38 | NT | 16.0% | intergenic (‑278/+184) | cyoA/ampG | cytochrome o ubiquinol oxidase subunit II/muropeptide transporter |
? | REL606 | 3002837 = | 31 (0.380) | coding (307/2517 nt) | yeeR | predicted membrane protein | |||||
* | ? | REL606 | 422594 = | 77 (0.750) | 21 (0.230) | 4/42 | NT | 25.6% | intergenic (‑281/+181) | cyoA/ampG | cytochrome o ubiquinol oxidase subunit II/muropeptide transporter |
? | REL606 | 2573117 = | 55 (0.610) | intergenic (‑11/‑196) | yfhM/sseA | hypothetical protein/3‑mercaptopyruvate sulfurtransferase | |||||
* | ? | REL606 | 422594 = | 77 (0.750) | 21 (0.220) | 7/44 | NT | 23.0% | intergenic (‑281/+181) | cyoA/ampG | cytochrome o ubiquinol oxidase subunit II/muropeptide transporter |
? | REL606 | = 3721305 | 76 (0.740) | coding (669/1191 nt) | lldD | L‑lactate dehydrogenase, FMN‑linked | |||||
* | ? | REL606 | 445976 = | 79 (0.770) | 9 (0.120) | 4/36 | NT | 13.8% | coding (944/1287 nt) | amtB | ammonium transporter |
? | REL606 | 3083447 = | 53 (0.690) | coding (197/495 nt) | yqhA | hypothetical protein | |||||
* | ? | REL606 | 447249 = | 84 (0.820) | 18 (0.180) | 5/46 | NT | 17.5% | intergenic (‑21/‑197) | tesB/ybaY | acyl‑CoA thioesterase II/predicted outer membrane lipoprotein |
? | REL606 | 1286712 = | 89 (0.900) | intergenic (+36/‑147) | narI/ECB_01206 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein | |||||
* | ? | REL606 | 449635 = | 24 (0.230) | 5 (0.070) | 3/34 | NT | 11.1% | coding (1050/1551 nt) | ylaB | conserved inner membrane protein |
? | REL606 | = 3144237 | 63 (0.870) | coding (314/1746 nt) | dnaG | DNA primase | |||||
* | ? | REL606 | 456653 = | 60 (0.580) | 11 (0.140) | 4/36 | NT | 17.7% | coding (1034/1194 nt) | acrA | multidrug efflux system |
? | REL606 | 3845122 = | 57 (0.740) | coding (269/360 nt) | rnpA | ribonuclease P | |||||
* | ? | REL606 | 462517 = | 55 (0.540) | 11 (0.120) | 4/42 | NT | 17.3% | coding (363/528 nt) | priC | primosomal replication protein N'' |
? | REL606 | 1306336 = | 57 (0.630) | intergenic (‑97/+274) | cls/kch | cardiolipin synthetase/voltage‑gated potassium channel | |||||
* | ? | REL606 | 469267 = | 124 (1.210) | 5 (0.060) | 3/42 | NT | 4.9% | coding (26/645 nt) | adk | adenylate kinase |
? | REL606 | 2766488 = | 87 (0.970) | coding (154/480 nt) | ispF | 2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase | |||||
* | ? | REL606 | 471760 = | 64 (0.620) | 13 (0.140) | 5/42 | NT | 15.0% | coding (281/960 nt) | aes | acetyl esterase |
? | REL606 | 3912266 = | 91 (1.010) | intergenic (+46/‑94) | ilvL/ilvG | ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit | |||||
* | ? | REL606 | = 473904 | 87 (0.850) | 42 (0.540) | 6/36 | NT | 41.1% | coding (1402/1677 nt) | ybaL | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
? | REL606 | = 1923465 | 55 (0.710) | coding (662/1011 nt) | ruvB | Holliday junction DNA helicase B | |||||
* | ? | REL606 | 481061 = | 70 (0.680) | 12 (0.160) | 4/34 | NT | 13.9% | coding (2487/2505 nt) | copA | copper transporter |
? | REL606 | = 606452 | 99 (1.360) | coding (767/957 nt) | fepB | iron‑enterobactin transporter subunit | |||||
* | ? | REL606 | 489053 = | 105 (1.020) | 9 (0.100) | 5/42 | NT | 12.3% | coding (303/780 nt) | ybbM | predicted inner membrane protein |
? | REL606 | 3821518 = | 37 (0.410) | coding (910/1323 nt) | glvG | predicted 6‑phospho‑beta‑glucosidase | |||||
* | ? | REL606 | 505984 = | 28 (0.270) | 12 (0.130) | 6/42 | NT | 16.8% | coding (808/816 nt) | allR | DNA‑binding transcriptional repressor |
? | REL606 | 2525727 = | 94 (1.050) | coding (4/1350 nt) | hyfD | hydrogenase 4 membrane subunit | |||||
* | ? | REL606 | 506020 = | 104 (1.010) | 12 (0.120) | 4/48 | NT | 14.8% | intergenic (+28/‑62) | allR/gcl | DNA‑binding transcriptional repressor/glyoxylate carboligase |
? | REL606 | 758029 = | 34 (0.330) | coding (806/1266 nt) | tolA | cell envelope integrity inner membrane protein TolA | |||||
* | ? | REL606 | 514780 = | 90 (0.880) | 3 (0.050) | 3/28 | NT | 8.3% | coding (727/1146 nt) | glxK | glycerate kinase II |
? | REL606 | 1871739 = | 14 (0.230) | coding (75/1911 nt) | yoaA | conserved protein with nucleoside triphosphate hydrolase domain | |||||
* | ? | REL606 | 519489 = | 96 (0.930) | 12 (0.160) | 3/36 | NT | 16.6% | coding (644/1668 nt) | fdrA | membrane protein FdrA |
? | REL606 | 1815514 = | 49 (0.640) | coding (1030/1491 nt) | ynjC | fused transporter subunits of ABC superfamily: membrane components | |||||
* | ? | REL606 | = 547699 | NA (NA) | 48 (0.470) | 30/48 | NT | NA | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 557127 = | NA (NA) | coding (70/282 nt) | ECB_00514 | conserved hypothetical protein | |||||
* | ? | REL606 | 558248 = | 18 (0.180) | 6 (0.090) | 4/32 | NT | 19.7% | coding (185/294 nt) | ECB_00516 | conserved hypothetical protein |
? | REL606 | 3001100 = | 37 (0.540) | coding (1537/2847 nt) | flu | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter | |||||
* | ? | REL606 | 564054 = | 42 (0.410) | 9 (0.120) | 3/34 | NT | 14.5% | coding (2252/2973 nt) | nfrA | bacteriophage N4 receptor, outer membrane subunit |
? | REL606 | 1414711 = | 76 (1.040) | coding (223/276 nt) | racC | predicted protein | |||||
* | ? | REL606 | 575058 = | 51 (0.500) | 11 (0.140) | 3/38 | NT | 9.8% | coding (616/1449 nt) | cusS | sensory histidine kinase in two‑component regulatory system with CusR, senses copper ions |
? | REL606 | = 2762587 | 162 (1.990) | coding (1028/1140 nt) | nlpD | predicted outer membrane lipoprotein | |||||
* | ? | REL606 | 580467 = | 60 (0.580) | 4 (0.050) | 3/36 | NT | 9.1% | coding (851/3144 nt) | cusA | copper/silver efflux system, membrane component |
? | REL606 | 2397842 = | 35 (0.450) | coding (824/2646 nt) | yfcTU | predicted outer membrane export usher protein | |||||
* | ? | REL606 | 580468 = | 60 (0.580) | 16 (0.200) | 4/38 | NT | 16.7% | coding (852/3144 nt) | cusA | copper/silver efflux system, membrane component |
? | REL606 | 2715365 = | 112 (1.380) | coding (1506/2631 nt) | alaS | alanyl‑tRNA synthetase | |||||
* | ? | REL606 | 581288 = | 99 (0.960) | 12 (0.150) | 3/38 | NT | 17.1% | coding (1672/3144 nt) | cusA | copper/silver efflux system, membrane component |
? | REL606 | 1956195 = | 38 (0.470) | coding (420/579 nt) | flhC | DNA‑binding transcriptional dual regulator with FlhD | |||||
* | ? | REL606 | = 583407 | 44 (0.430) | 12 (0.160) | 3/34 | NT | 15.9% | coding (546/1377 nt) | pheP | phenylalanine transporter |
? | REL606 | 3882315 = | 96 (1.320) | coding (103/816 nt) | atpB | F0F1 ATP synthase subunit A | |||||
* | ? | REL606 | 588495 = | NA (NA) | 5 (0.050) | 4/44 | NT | NA | noncoding (1/1977 nt) | IS150 | repeat region |
? | REL606 | 589936 = | NA (NA) | noncoding (387/768 nt) | IS1 | repeat region | |||||
* | ? | REL606 | 594300 = | 32 (0.310) | 8 (0.110) | 5/34 | NT | 13.7% | coding (902/2241 nt) | fepA | iron‑enterobactin outer membrane transporter |
? | REL606 | = 3534924 | 78 (1.070) | coding (8/1497 nt) | ftsY | fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein | |||||
* | ? | REL606 | 601491 = | 81 (0.790) | 7 (0.100) | 3/34 | NT | 10.1% | coding (530/1134 nt) | fepE | regulator of length of O‑antigen component of lipopolysaccharide chains |
? | REL606 | 2785963 = | 67 (0.920) | coding (408/1338 nt) | ygcS | predicted transporter | |||||
* | ? | REL606 | 610886 = | 57 (0.550) | 19 (0.260) | 4/34 | NT | 28.5% | coding (485/858 nt) | entB | isochorismatase |
? | REL606 | 1306336 = | 55 (0.760) | intergenic (‑97/+274) | cls/kch | cardiolipin synthetase/voltage‑gated potassium channel | |||||
* | ? | REL606 | = 615035 | 53 (0.520) | 4 (0.050) | 3/38 | NT | 7.4% | coding (157/198 nt) | ybdD | hypothetical protein |
? | REL606 | = 3625455 | 58 (0.710) | pseudogene (8/738 nt) | yhjQ | b3534; cell division protein (chromosome partitioning ATPase) | |||||
* | ? | REL606 | 640115 = | 106 (1.030) | 28 (0.380) | 5/34 | NT | 24.6% | intergenic (+33/+22) | cspE/ccrB | cold shock protein E/camphor resistance protein CrcB |
? | REL606 | 2746531 = | 97 (1.330) | coding (671/873 nt) | hypB | GTP hydrolase involved in nickel liganding into hydrogenases | |||||
* | ? | REL606 | 640120 = | 107 (1.040) | 10 (0.100) | 3/46 | NT | 11.1% | intergenic (+38/+17) | cspE/ccrB | cold shock protein E/camphor resistance protein CrcB |
? | REL606 | 2388696 = | 58 (0.590) | coding (457/810 nt) | yfcA | conserved inner membrane protein | |||||
* | ? | REL606 | = 642994 | 84 (0.820) | 9 (0.110) | 4/38 | NT | 12.4% | intergenic (‑195/+14) | lipA/ybeF | lipoyl synthase/predicted DNA‑binding transcriptional regulator |
? | REL606 | 967183 = | 61 (0.750) | coding (423/591 nt) | ycaK | hypothetical protein | |||||
* | ? | REL606 | = 657260 | 81 (0.790) | 7 (0.090) | 5/38 | NT | 8.3% | coding (108/2583 nt) | leuS | leucyl‑tRNA synthetase |
? | REL606 | = 1387545 | 90 (1.110) | coding (247/966 nt) | ycjG | L‑Ala‑D/L‑Glu epimerase | |||||
* | ? | REL606 | = 664687 | 67 (0.650) | 34 (0.380) | 20/42 | NT | 39.4% | intergenic (‑78/‑48) | gltL/insJ‑2 | ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein |
? | REL606 | 666134 = | 46 (0.510) | pseudogene (354/387 nt) | gltL | ATP‑binding protein of glutamate/aspartate transport system; b0652_2 | |||||
* | ? | REL606 | 664688 = | NA (NA) | 108 (1.150) | 38/44 | NT | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
? | REL606 | 1270660 = | 0 (0.000) | intergenic (‑167/+238) | ldrC/chaA | toxic polypeptide, small/calcium/sodium:proton antiporter | |||||
* | ? | REL606 | = 672796 | 79 (0.770) | 10 (0.150) | 3/32 | NT | 16.4% | coding (181/1539 nt) | lnt | apolipoprotein N‑acyltransferase |
? | REL606 | 1048881 = | 49 (0.720) | intergenic (‑78/‑349) | serT/hyaA | tRNA‑Ser/hydrogenase 1, small subunit | |||||
* | ? | REL606 | = 679401 | 75 (0.730) | 6 (0.070) | 3/38 | NT | 13.9% | intergenic (‑174/+207) | metT/asnB | tRNA‑Met/asparagine synthetase B |
? | REL606 | 4198479 = | 15 (0.180) | coding (341/1737 nt) | aceK | bifunctional isocitrate dehydrogenase kinase/phosphatase protein | |||||
* | ? | REL606 | = 681365 | 68 (0.660) | 10 (0.180) | 3/26 | NT | 18.0% | intergenic (‑93/+304) | asnB/nagD | asparagine synthetase B/UMP phosphatase |
? | REL606 | = 2930921 | 54 (0.970) | coding (734/744 nt) | ygfF | predicted NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain | |||||
* | ? | REL606 | = 687921 | 62 (0.600) | 12 (0.130) | 4/44 | NT | 12.4% | coding (1883/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA components |
? | REL606 | 970674 = | 112 (1.190) | intergenic (‑27/+28) | pflB/focA | pyruvate formate lyase I/formate transporter | |||||
* | ? | REL606 | = 699047 | 102 (0.990) | 3 (0.040) | 3/36 | NT | 4.6% | coding (1314/1320 nt) | potE | putrescine/proton symporter: putrescine/ornithine antiporter |
? | REL606 | 1115826 = | 48 (0.620) | coding (428/834 nt) | csgG | outer membrane lipoprotein | |||||
* | ? | REL606 | 734239 = | 59 (0.570) | 18 (0.180) | 6/48 | NT | 29.0% | coding (1021/1284 nt) | gltA | citrate synthase |
? | REL606 | 1556579 = | 29 (0.280) | intergenic (‑104/+298) | ydeN/ydeO | hypothetical protein/predicted DNA‑binding transcriptional acfivator | |||||
* | ? | REL606 | = 738279 | 23 (0.220) | 14 (0.230) | 3/28 | NT | 31.3% | coding (1582/1767 nt) | sdhA | succinate dehydrogenase flavoprotein subunit |
? | REL606 | = 3686151 | 48 (0.800) | coding (411/741 nt) | yiaT | hypothetical protein | |||||
* | ? | REL606 | 741667 = | 102 (0.990) | 24 (0.310) | 5/36 | NT | 25.9% | coding (2171/2802 nt) | sucA | alpha‑ketoglutarate decarboxylase |
? | REL606 | = 1476120 | 81 (0.790) | coding (71/1176 nt) | ydcO | predicted benzoate transporter | |||||
* | ? | REL606 | = 756509 | 64 (0.620) | 16 (0.210) | 4/36 | NT | 23.0% | coding (475/693 nt) | tolQ | membrane spanning protein in TolA‑TolQ‑TolR complex |
? | REL606 | 1539626 = | 59 (0.770) | coding (46/2400 nt) | dos | cAMP phosphodiesterase, heme‑regulated | |||||
* | ? | REL606 | 790656 = | 71 (0.690) | 5 (0.070) | 3/34 | NT | 9.7% | coding (88/186 nt) | ECB_00731 | conserved hypothetical protein |
? | REL606 | 1598222 = | 43 (0.590) | coding (459/1461 nt) | ydfI | predicted mannonate dehydrogenase | |||||
* | ? | REL606 | 805852 = | 114 (1.110) | 112 (1.380) | 8/38 | NT | 55.4% | intergenic (+279/‑300) | bioD/uvrB | dethiobiotin synthetase/excinuclease ABC subunit B |
? | REL606 | = 1193676 | NA (NA) | noncoding (62/768 nt) | IS1 | repeat region | |||||
* | ? | REL606 | = 842815 | 109 (1.060) | 4 (0.040) | 3/44 | NT | 4.8% | intergenic (‑93/‑260) | ybiF/ompX | threonine and homoserine efflux system/outer membrane protein X |
? | REL606 | 3607355 = | 58 (0.620) | coding (503/2076 nt) | yhjG | predicted outer membrane biogenesis protein | |||||
* | ? | REL606 | 866988 = | 115 (1.120) | 7 (0.090) | 4/38 | NT | 9.9% | coding (1206/2097 nt) | yliE | conserved inner membrane protein |
? | REL606 | = 4527146 | 37 (0.450) | coding (1137/2637 nt) | fimD | outer membrane usher protein, type 1 fimbrial synthesis | |||||
* | ? | REL606 | 875814 = | 63 (0.610) | 19 (0.220) | 5/40 | NT | 23.4% | coding (127/597 nt) | ybjG | undecaprenyl pyrophosphate phosphatase |
? | REL606 | = 3285418 | 72 (0.840) | coding (277/654 nt) | yhbL | isoprenoid biosynthesis protein with amidotransferase‑like domain | |||||
* | ? | REL606 | 894104 = | 69 (0.670) | 17 (0.200) | 5/40 | NT | 21.9% | coding (646/1767 nt) | ECB_00833 | Terminase, ATPase subunit |
? | REL606 | = 2195255 | 64 (0.750) | coding (108/837 nt) | yeiG | predicted esterase | |||||
* | ? | REL606 | 923960 = | 74 (0.720) | 7 (0.090) | 3/36 | NT | 8.9% | coding (1030/1431 nt) | ybjT | conserved protein with NAD(P)‑binding Rossmann‑fold domain |
? | REL606 | 3472589 = | 88 (1.140) | coding (758/879 nt) | yhgA | predicted transposase | |||||
* | ? | REL606 | 924268 = | 101 (0.980) | 11 (0.140) | 3/36 | NT | 16.3% | coding (722/1431 nt) | ybjT | conserved protein with NAD(P)‑binding Rossmann‑fold domain |
? | REL606 | 2554226 = | 37 (0.480) | coding (664/1467 nt) | guaB | inositol‑5‑monophosphate dehydrogenase | |||||
* | ? | REL606 | 924268 = | 101 (0.980) | 7 (0.090) | 3/36 | NT | 13.1% | coding (722/1431 nt) | ybjT | conserved protein with NAD(P)‑binding Rossmann‑fold domain |
? | REL606 | = 3633290 | 17 (0.220) | coding (37/1005 nt) | dppF | dipeptide transporter | |||||
* | ? | REL606 | 924268 = | 101 (0.980) | 9 (0.120) | 3/36 | NT | 13.4% | coding (722/1431 nt) | ybjT | conserved protein with NAD(P)‑binding Rossmann‑fold domain |
? | REL606 | = 4366448 | 41 (0.530) | coding (1078/3324 nt) | yjeP | predicted mechanosensitive channel | |||||
* | ? | REL606 | 924276 = | 93 (0.910) | 10 (0.100) | 3/46 | NT | 12.3% | coding (714/1431 nt) | ybjT | conserved protein with NAD(P)‑binding Rossmann‑fold domain |
? | REL606 | = 1365457 | 53 (0.540) | coding (824/978 nt) | pspF | DNA‑binding transcriptional activator | |||||
* | ? | REL606 | 929308 = | 57 (0.550) | 8 (0.120) | 3/32 | NT | 13.8% | coding (1214/1653 nt) | hcp | hydroxylamine reductase |
? | REL606 | = 3040633 | 62 (0.910) | coding (654/810 nt) | pppA | bifunctional prepilin leader peptidase/ methylase | |||||
* | ? | REL606 | 932696 = | 61 (0.590) | 12 (0.180) | 3/32 | NT | 18.9% | coding (59/696 nt) | aqpZ | aquaporin Z |
? | REL606 | = 3040633 | 62 (0.910) | coding (654/810 nt) | pppA | bifunctional prepilin leader peptidase/ methylase | |||||
* | ? | REL606 | 947579 = | 44 (0.430) | 9 (0.090) | 4/46 | NT | 13.7% | coding (442/1767 nt) | cydD | fused cysteine transporter subunits of ABC superfamily: membrane component/ATP‑binding component |
? | REL606 | = 3484563 | 71 (0.720) | coding (887/1017 nt) | rtcA | RNA 3'‑terminal‑phosphate cyclase | |||||
* | ? | REL606 | 954088 = | 106 (1.030) | 4 (0.040) | 3/48 | NT | 4.2% | coding (3807/4029 nt) | ftsK | DNA‑binding membrane protein required for chromosome resolution and partitioning |
? | REL606 | 4604384 = | 76 (0.740) | coding (394/864 nt) | yjjW | predicted pyruvate formate lyase activating enzyme | |||||
* | ? | REL606 | 957480 = | 61 (0.590) | 11 (0.150) | 3/34 | NT | 20.1% | coding (960/1293 nt) | serS | seryl‑tRNA synthetase |
? | REL606 | = 3467034 | 44 (0.600) | coding (963/2319 nt) | yhgF | predicted transcriptional accessory protein | |||||
* | ? | REL606 | 965820 = | 63 (0.610) | 8 (0.100) | 3/36 | NT | 12.3% | coding (842/909 nt) | ycaN | predicted DNA‑binding transcriptional regulator |
? | REL606 | 4368357 = | 67 (0.870) | coding (159/969 nt) | psd | phosphatidylserine decarboxylase | |||||
* | ? | REL606 | = 989609 | 56 (0.540) | 13 (0.160) | 4/38 | NT | 32.0% | coding (766/894 nt) | ycbJ | hypothetical protein |
? | REL606 | 2795469 = | 11 (0.140) | coding (831/873 nt) | ygcG | hypothetical protein | |||||
* | ? | REL606 | 1004939 = | 65 (0.630) | 15 (0.180) | 5/40 | NT | 19.2% | coding (1138/1401 nt) | asnS | asparaginyl‑tRNA synthetase |
? | REL606 | 1339539 = | 72 (0.840) | coding (610/1170 nt) | yciM | hypothetical protein | |||||
* | ? | REL606 | = 1006225 | 100 (0.970) | 9 (0.110) | 3/38 | NT | 13.2% | intergenic (‑149/+20) | asnS/pncB | asparaginyl‑tRNA synthetase/nicotinate phosphoribosyltransferase |
? | REL606 | = 4210740 | 39 (0.480) | intergenic (‑178/+75) | yjbD/lysC | hypothetical protein/aspartate kinase III | |||||
* | ? | REL606 | = 1017944 | 68 (0.660) | 11 (0.110) | 7/48 | NT | 11.4% | coding (1638/2601 nt) | ycbS | predicted outer membrane usher protein |
? | REL606 | = 3424887 | 103 (1.000) | intergenic (+105/‑21) | nirD/nirC | nitrite reductase small subunit/nitrite transporter | |||||
* | ? | REL606 | 1036060 = | 100 (0.970) | 19 (0.190) | 7/46 | NT | 20.0% | intergenic (+32/+44) | ycbG/ompA | hypothetical protein/outer membrane protein A (3a;II*;G;d) |
? | REL606 | 3483139 = | 59 (0.570) | coding (1455/2706 nt) | malT | transcriptional regulator MalT | |||||
* | ? | REL606 | = 1036071 | 104 (1.010) | 18 (0.180) | 6/46 | NT | 17.6% | intergenic (+43/+33) | ycbG/ompA | hypothetical protein/outer membrane protein A (3a;II*;G;d) |
? | REL606 | = 2316746 | 69 (0.700) | coding (216/891 nt) | yfbH | hypothetical protein | |||||
* | ? | REL606 | = 1036071 | 104 (1.010) | 13 (0.130) | 7/46 | NT | 13.9% | intergenic (+43/+33) | ycbG/ompA | hypothetical protein/outer membrane protein A (3a;II*;G;d) |
? | REL606 | 3487307 = | 61 (0.620) | coding (440/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression | |||||
* | ? | REL606 | 1050924 = | 43 (0.420) | 6 (0.070) | 4/40 | NT | 9.8% | coding (580/1794 nt) | hyaB | hydrogenase 1, large subunit |
? | REL606 | 1543472 = | 75 (0.880) | coding (969/1536 nt) | xasA | predicted glutamate:gamma‑aminobutyric acid antiporter | |||||
* | ? | REL606 | = 1054933 | 86 (0.840) | 11 (0.120) | 4/44 | NT | 9.8% | coding (103/1545 nt) | appC | cytochrome bd‑II oxidase, subunit I |
? | REL606 | = 3766502 | 123 (1.310) | coding (1206/1206 nt) | gltS | glutamate transporter | |||||
* | ? | REL606 | = 1072149 | 74 (0.720) | 4 (0.040) | 3/42 | NT | 4.8% | coding (320/2745 nt) | torS | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
? | REL606 | 3712714 = | 106 (1.030) | coding (451/684 nt) | ECB_03459 | conserved hypothetical protein | |||||
* | ? | REL606 | = 1075765 | 68 (0.660) | 14 (0.170) | 4/38 | NT | 15.8% | coding (220/2547 nt) | torA | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
? | REL606 | = 3523984 | 95 (1.170) | coding (128/714 nt) | livF | leucine/isoleucine/valine transporter subunit | |||||
* | ? | REL606 | = 1076256 | 103 (1.000) | 12 (0.160) | 3/36 | NT | 15.1% | coding (711/2547 nt) | torA | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
? | REL606 | 3800450 = | 58 (0.750) | intergenic (+10/+31) | ECB_03545/yicM | hypothetical protein/predicted transporter | |||||
* | ? | REL606 | 1076727 = | 60 (0.580) | 8 (0.090) | 5/40 | NT | 14.4% | coding (1182/2547 nt) | torA | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
? | REL606 | 3786648 = | 45 (0.530) | coding (75/339 nt) | ECB_03525 | conserved hypothetical protein | |||||
* | ? | REL606 | 1087708 = | 57 (0.550) | 7 (0.090) | 3/36 | NT | 11.8% | coding (342/801 nt) | ycdJ | predicted hydrolase |
? | REL606 | = 1145443 | 62 (0.800) | intergenic (‑8/‑147) | flgA/flgB | flagellar basal body P‑ring biosynthesis protein A/flagellar basal‑body rod protein B | |||||
* | ? | REL606 | 1095862 = | 53 (0.520) | 3 (0.050) | 3/28 | NT | 10.4% | coding (274/1509 nt) | putP | proline:sodium symporter |
? | REL606 | 1585457 = | 21 (0.350) | coding (495/666 nt) | marC | predicted transporter | |||||
* | ? | REL606 | 1112140 = | NA (NA) | 14 (0.140) | 5/48 | NT | 35.9% | noncoding (81/88 nt) | serX | tRNA‑Ser |
? | REL606 | = 3173882 | 25 (0.240) | coding (905/1245 nt) | ygjU | sodium:serine/threonine symporter | |||||
* | ? | REL606 | 1133033 = | 122 (1.190) | 8 (0.100) | 3/38 | NT | 9.4% | coding (13/576 nt) | yceI | hypothetical protein |
? | REL606 | = 2612120 | 57 (0.700) | intergenic (‑323/+253) | yfhK/purL | predicted sensory kinase in two‑component system/phosphoribosylformylglycinamidine synthase | |||||
* | ? | REL606 | = 1145450 | 100 (0.970) | 8 (0.100) | 4/36 | NT | 10.0% | intergenic (‑15/‑140) | flgA/flgB | flagellar basal body P‑ring biosynthesis protein A/flagellar basal‑body rod protein B |
? | REL606 | = 3613817 | 69 (0.900) | coding (1255/1950 nt) | yhjK | predicted diguanylate cyclase | |||||
* | ? | REL606 | 1157306 = | 35 (0.340) | 4 (0.050) | 4/38 | NT | 11.3% | coding (1631/3186 nt) | rne | fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein |
? | REL606 | = 1452435 | 35 (0.430) | intergenic (‑244/‑14) | acpD/hrpA | acyl carrier protein phosphodiesterase/ATP‑dependent helicase | |||||
* | ? | REL606 | = 1181580 | 88 (0.860) | 8 (0.100) | 3/38 | NT | 11.2% | coding (919/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
? | REL606 | 2872317 = | 57 (0.700) | coding (1204/1263 nt) | lysA | diaminopimelate decarboxylase, PLP‑binding | |||||
* | ? | REL606 | = 1183967 | 102 (0.990) | 18 (0.180) | 7/48 | NT | 19.3% | intergenic (+43/+40) | ycfR/ycfS | hypothetical protein/hypothetical protein |
? | REL606 | = 3012564 | 49 (0.480) | coding (248/1020 nt) | ECB_02814 | conserved hypothetical protein | |||||
* | ? | REL606 | = 1183967 | 102 (0.990) | 15 (0.150) | 4/46 | NT | 15.2% | intergenic (+43/+40) | ycfR/ycfS | hypothetical protein/hypothetical protein |
? | REL606 | = 4549416 | 69 (0.700) | coding (18/1233 nt) | yjiO | multidrug efflux system protein | |||||
* | ? | REL606 | 1199795 = | 69 (0.670) | 4 (0.060) | 3/30 | NT | 7.4% | coding (20/828 nt) | potB | spermidine/putrescine ABC transporter membrane protein |
? | REL606 | = 3283512 | 57 (0.890) | intergenic (+39/‑175) | ptsO/yrbL | phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr)/hypothetical protein | |||||
* | ? | REL606 | 1204666 = | 70 (0.680) | 9 (0.120) | 4/36 | NT | 11.7% | coding (481/1461 nt) | phoQ | sensory histidine kinase in two‑compoent regulatory system with PhoP |
? | REL606 | 3975303 = | 83 (1.080) | coding (677/801 nt) | yigL | predicted hydrolase | |||||
* | ? | REL606 | = 1213353 | 36 (0.350) | 4 (0.060) | 3/30 | NT | 9.5% | intergenic (‑85/+136) | ycgX/ycgE | hypothetical protein/predicted DNA‑binding transcriptional regulator |
? | REL606 | = 4512602 | 54 (0.840) | coding (720/747 nt) | yjhP | predicted methyltransferase | |||||
* | ? | REL606 | 1249678 = | 70 (0.680) | 6 (0.090) | 4/30 | NT | 11.3% | coding (230/633 nt) | dhaL | dihydroxyacetone kinase, C‑terminal domain |
? | REL606 | 1306336 = | 50 (0.780) | intergenic (‑97/+274) | cls/kch | cardiolipin synthetase/voltage‑gated potassium channel | |||||
* | ? | REL606 | 1255973 = | 72 (0.700) | 12 (0.140) | 4/40 | NT | 19.0% | coding (130/2868 nt) | ycgV | predicted adhesin |
? | REL606 | = 3223859 | 42 (0.490) | coding (537/696 nt) | yraI | predicted periplasmic pilin chaperone | |||||
* | ? | REL606 | 1286707 = | 97 (0.940) | 9 (0.110) | 4/38 | NT | 10.5% | intergenic (+31/‑152) | narI/ECB_01206 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein |
? | REL606 | = 1424360 | NA (NA) | coding (192/294 nt) | ECB_01344 | conserved hypothetical protein | |||||
* | ? | REL606 | 1286707 = | 97 (0.940) | 17 (0.210) | 5/38 | NT | 21.4% | intergenic (+31/‑152) | narI/ECB_01206 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein |
? | REL606 | = 4286236 | 48 (0.590) | coding (386/930 nt) | alsK | D‑allose kinase | |||||
* | ? | REL606 | 1286708 = | 97 (0.940) | 10 (0.120) | 4/40 | NT | 12.7% | intergenic (+32/‑151) | narI/ECB_01206 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein |
? | REL606 | = 4391784 | 57 (0.670) | coding (602/1164 nt) | yjfC | predicted synthetase/amidase | |||||
* | ? | REL606 | 1306117 = | 70 (0.680) | 13 (0.140) | 4/44 | NT | 14.3% | coding (123/1461 nt) | cls | cardiolipin synthetase |
? | REL606 | 4085858 = | 92 (0.980) | intergenic (+56/‑93) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F | |||||
* | ? | REL606 | 1306326 = | 88 (0.860) | 10 (0.170) | 3/28 | NT | 18.1% | intergenic (‑87/+284) | cls/kch | cardiolipin synthetase/voltage‑gated potassium channel |
? | REL606 | = 2380515 | 39 (0.650) | coding (929/1137 nt) | pdxB | erythronate‑4‑phosphate dehydrogenase | |||||
* | ? | REL606 | 1306327 = | 87 (0.850) | 9 (0.140) | 3/30 | NT | 15.9% | intergenic (‑88/+283) | cls/kch | cardiolipin synthetase/voltage‑gated potassium channel |
? | REL606 | = 3884923 | 41 (0.640) | coding (1072/1890 nt) | gidA | glucose‑inhibited division protein A | |||||
* | ? | REL606 | 1306329 = | 80 (0.780) | 14 (0.190) | 4/34 | NT | 22.1% | intergenic (‑90/+281) | cls/kch | cardiolipin synthetase/voltage‑gated potassium channel |
? | REL606 | = 3839377 | 42 (0.580) | coding (1104/2415 nt) | gyrB | DNA gyrase subunit B | |||||
* | ? | REL606 | 1332666 = | 72 (0.700) | 5 (0.060) | 4/36 | NT | 7.6% | coding (440/975 nt) | cysB | DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding |
? | REL606 | = 4432999 | 68 (0.880) | intergenic (‑97/‑213) | ppa/ytfQ | inorganic pyrophosphatase/predicted sugar transporter subunit: periplasmic‑binding component of ABC superfamily | |||||
* | ? | REL606 | 1332936 = | 97 (0.940) | 12 (0.150) | 5/38 | NT | 15.3% | coding (710/975 nt) | cysB | DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding |
? | REL606 | = 2871320 | 56 (0.690) | coding (101/1032 nt) | galR | DNA‑binding transcriptional repressor | |||||
* | ? | REL606 | = 1335926 | 52 (0.510) | 11 (0.170) | 5/30 | NT | 18.7% | coding (1724/2676 nt) | acnA | aconitate hydratase |
? | REL606 | = 2863313 | 63 (0.980) | coding (285/531 nt) | ygdP | dinucleoside polyphosphate hydrolase | |||||
* | ? | REL606 | 1337070 = | 141 (1.370) | 6 (0.070) | 5/42 | NT | 7.6% | coding (463/591 nt) | ribA | GTP cyclohydrolase II protein |
? | REL606 | 4326307 = | 22 (0.240) | coding (1153/1341 nt) | dcuB | C4‑dicarboxylate antiporter | |||||
* | ? | REL606 | 1349554 = | 66 (0.640) | 10 (0.130) | 4/36 | NT | 18.6% | intergenic (‑146/+222) | fabI/ycjD | enoyl‑(acyl carrier protein) reductase/hypothetical protein |
? | REL606 | = 3574369 | 38 (0.490) | coding (1504/2043 nt) | prlC | oligopeptidase A | |||||
* | ? | REL606 | 1349559 = | 56 (0.540) | 6 (0.060) | 3/46 | NT | 8.3% | intergenic (‑151/+217) | fabI/ycjD | enoyl‑(acyl carrier protein) reductase/hypothetical protein |
? | REL606 | = 2307173 | 79 (0.800) | coding (767/1218 nt) | yfaW | predicted enolase | |||||
* | ? | REL606 | = 1398219 | 108 (1.050) | 6 (0.090) | 3/32 | NT | 8.5% | coding (725/1527 nt) | abgT | predicted cryptic aminobenzoyl‑glutamate transporter |
? | REL606 | = 1743481 | 58 (0.850) | coding (2472/3057 nt) | ydiJ | predicted FAD‑linked oxidoreductase | |||||
* | ? | REL606 | 1430232 = | 98 (0.950) | 7 (0.100) | 3/34 | NT | 10.1% | coding (2159/3525 nt) | ydbK | fused predicted pyruvate‑flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein |
? | REL606 | 3284457 = | 55 (0.760) | coding (588/729 nt) | mtgA | monofunctional biosynthetic peptidoglycan transglycosylase | |||||
* | ? | REL606 | = 1462269 | 59 (0.570) | 9 (0.100) | 8/42 | NT | 14.8% | intergenic (‑31/‑310) | mokB/trg | regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
? | REL606 | = 3894996 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
* | ? | REL606 | = 1493185 | 140 (1.360) | 10 (0.120) | 4/38 | NT | 10.9% | intergenic (‑10/‑232) | yncD/yncE | predicted iron outer membrane transporter/hypothetical protein |
? | REL606 | 3269358 = | 53 (0.650) | coding (415/972 nt) | ispB | octaprenyl diphosphate synthase | |||||
* | ? | REL606 | 1493949 = | 71 (0.690) | 13 (0.160) | 5/38 | NT | 17.3% | coding (533/1062 nt) | yncE | hypothetical protein |
? | REL606 | = 1619524 | 68 (0.840) | intergenic (‑133/+84) | rem/hokD | predicted protein/small toxic polypeptide | |||||
* | ? | REL606 | 1494073 = | 76 (0.740) | 15 (0.170) | 7/42 | NT | 16.6% | coding (657/1062 nt) | yncE | hypothetical protein |
? | REL606 | 4351442 = | 84 (0.930) | intergenic (+50/‑88) | groEL/yjeI | chaperonin GroEL/hypothetical protein | |||||
* | ? | REL606 | 1495445 = | 79 (0.770) | 10 (0.110) | 4/44 | NT | 13.0% | coding (648/1500 nt) | ansP | L‑asparagine transporter |
? | REL606 | 3277263 = | 61 (0.650) | coding (763/987 nt) | yrbH | D‑arabinose 5‑phosphate isomerase | |||||
* | ? | REL606 | 1495878 = | 73 (0.710) | 13 (0.280) | 3/22 | NT | 21.2% | coding (215/1500 nt) | ansP | L‑asparagine transporter |
? | REL606 | = 1714633 | 138 (1.340) | intergenic (‑76/+90) | ydhP/ECB_01628 | putative transport protein (MFS family); b1657_2/predicted transporter | |||||
* | ? | REL606 | = 1499429 | 88 (0.860) | 12 (0.150) | 6/38 | NT | 14.1% | coding (1346/2127 nt) | ECB_01413 | conserved hypothetical protein |
? | REL606 | 1692278 = | 76 (0.930) | coding (806/864 nt) | pdxY | pyridoxine kinase | |||||
* | ? | REL606 | 1500892 = | NA (NA) | 5 (0.060) | 3/36 | NT | 12.2% | coding (616/4224 nt) | rhsE | rhsE element core protein RshE |
? | REL606 | = 1977657 | 48 (0.470) | coding (181/1005 nt) | yedY | hypothetical protein | |||||
* | ? | REL606 | 1510513 = | 81 (0.790) | 16 (0.210) | 4/36 | NT | 22.7% | coding (256/681 nt) | narV | nitrate reductase 2 (NRZ), gamma subunit |
? | REL606 | 4138913 = | 48 (0.620) | coding (563/918 nt) | oxyR | DNA‑binding transcriptional dual regulator | |||||
* | ? | REL606 | 1534318 = | 71 (0.690) | 12 (0.150) | 4/38 | NT | 24.9% | coding (550/1023 nt) | yddR | D‑ala‑D‑ala transporter subunit |
? | REL606 | = 2036370 | 16 (0.200) | coding (589/1113 nt) | wbbC | putative glycosyltransferase WbbC | |||||
* | ? | REL606 | 1539621 = | 78 (0.760) | 8 (0.100) | 4/38 | NT | 13.6% | coding (51/2400 nt) | dos | cAMP phosphodiesterase, heme‑regulated |
? | REL606 | = 3363882 | 40 (0.490) | coding (771/1290 nt) | rrmB | 16S rRNA m5C967 methyltransferase, S‑adenosyl‑L‑methionine‑dependent | |||||
* | ? | REL606 | 1539621 = | 78 (0.760) | 11 (0.140) | 5/38 | NT | 16.2% | coding (51/2400 nt) | dos | cAMP phosphodiesterase, heme‑regulated |
? | REL606 | 3527786 = | 52 (0.640) | coding (449/1110 nt) | livK | leucine transporter subunit | |||||
* | ? | REL606 | 1539621 = | 78 (0.760) | 10 (0.120) | 3/38 | NT | 16.0% | coding (51/2400 nt) | dos | cAMP phosphodiesterase, heme‑regulated |
? | REL606 | = 4445223 | 43 (0.530) | coding (715/2139 nt) | nrdD | anaerobic ribonucleoside triphosphate reductase | |||||
* | ? | REL606 | 1544434 = | 52 (0.510) | 6 (0.060) | 4/46 | NT | 10.0% | coding (7/1536 nt) | xasA | predicted glutamate:gamma‑aminobutyric acid antiporter |
? | REL606 | = 2047872 | 58 (0.590) | coding (1256/1395 nt) | wcaM | predicted colanic acid biosynthesis protein | |||||
* | ? | REL606 | 1587129 = | 65 (0.630) | 7 (0.090) | 3/36 | NT | 12.3% | coding (244/435 nt) | marR | DNA‑binding transcriptional repressor of multiple antibiotic resistance |
? | REL606 | 2696580 = | 51 (0.660) | coding (481/2145 nt) | nrdE | ribonucleotide‑diphosphate reductase alpha subunit | |||||
* | ? | REL606 | 1590579 = | 43 (0.420) | 11 (0.140) | 3/38 | NT | 20.2% | intergenic (+294/+147) | ydeE/ydeH | predicted transporter/hypothetical protein |
? | REL606 | = 3487475 | 53 (0.650) | coding (608/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression | |||||
* | ? | REL606 | = 1593097 | 34 (0.330) | 11 (0.130) | 6/40 | NT | 16.5% | intergenic (+40/+4) | ydeJ/dcp | competence damage‑inducible protein A/dipeptidyl carboxypeptidase II |
? | REL606 | 4085859 = | 83 (0.970) | intergenic (+57/‑92) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F | |||||
* | ? | REL606 | = 1598741 | 60 (0.580) | 10 (0.100) | 3/46 | NT | 15.9% | intergenic (‑61/+28) | ydfI/ydfJ | predicted mannonate dehydrogenase/predicted transporter |
? | REL606 | = 3347592 | 48 (0.490) | coding (552/918 nt) | yhdW | predicted amino‑acid transporter subunit | |||||
* | ? | REL606 | 1609469 = | 55 (0.540) | 5 (0.060) | 3/42 | NT | 9.8% | coding (36/207 nt) | ybcW | predicted protein |
? | REL606 | 2545121 = | 44 (0.490) | coding (1259/2067 nt) | ppk | polyphosphate kinase | |||||
* | ? | REL606 | 1661078 = | 57 (0.550) | 10 (0.120) | 4/40 | NT | 15.8% | coding (1002/1302 nt) | rstB | sensory histidine kinase in two‑component regulatory system with RstA |
? | REL606 | = 3625456 | 59 (0.690) | pseudogene (7/738 nt) | yhjQ | b3534; cell division protein (chromosome partitioning ATPase) | |||||
* | ? | REL606 | = 1673413 | 70 (0.680) | 24 (0.250) | 7/44 | NT | 28.7% | intergenic (‑147/+244) | uidA/uidR | beta‑D‑glucuronidase/DNA‑binding transcriptional repressor |
? | REL606 | = 4601575 | 55 (0.580) | intergenic (+52/‑70) | ytjA/yjjU | hypothetical protein/predicted esterase | |||||
* | ? | REL606 | = 1686611 | 82 (0.800) | 5 (0.050) | 3/48 | NT | 10.1% | coding (276/1059 nt) | rnfD | electron transport complex protein RnfD |
? | REL606 | 1736972 = | 7 (0.070) | coding (819/1221 nt) | sufS | selenocysteine lyase | |||||
* | ? | REL606 | = 1686611 | 82 (0.800) | 12 (0.120) | 3/48 | NT | 15.0% | coding (276/1059 nt) | rnfD | electron transport complex protein RnfD |
? | REL606 | = 4059472 | 54 (0.530) | coding (536/636 nt) | fdoI | formate dehydrogenase‑O, cytochrome b556 subunit | |||||
* | ? | REL606 | 1689078 = | 46 (0.450) | 9 (0.120) | 4/34 | NT | 15.7% | coding (362/636 nt) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
? | REL606 | = 1996353 | 64 (0.880) | coding (1494/1644 nt) | yeeO | predicted multidrug efflux system | |||||
* | ? | REL606 | 1691508 = | 100 (0.970) | 7 (0.100) | 3/34 | NT | 8.7% | intergenic (+43/‑63) | ydgR/gst | putative tripeptide transporter permease/glutathionine S‑transferase |
? | REL606 | = 1806767 | 76 (1.040) | coding (233/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
* | ? | REL606 | 1711816 = | 78 (0.760) | 21 (0.250) | 4/40 | NT | 22.6% | coding (188/816 nt) | ydhO | predicted lipoprotein |
? | REL606 | = 2450890 | 79 (0.920) | intergenic (‑182/+27) | yfeA/alaX | predicted diguanylate cyclase/tRNA‑Ala | |||||
* | ? | REL606 | 1723584 = | 50 (0.490) | 4 (0.050) | 3/36 | NT | 6.2% | intergenic (‑190/‑118) | ydhQ/valV | hypothetical protein/tRNA‑Val |
? | REL606 | = 2780594 | 110 (1.070) | intergenic (‑196/‑120) | cysJ/ygcM | sulfite reductase, alpha subunit, flavoprotein/6‑pyruvoyl tetrahydrobiopterin synthase (PTPS) | |||||
* | ? | REL606 | 1731442 = | 72 (0.700) | 7 (0.070) | 3/46 | NT | 11.5% | coding (303/627 nt) | ydhY | predicted 4Fe‑4S ferridoxin‑type protein |
? | REL606 | 3480446 = | 39 (0.400) | coding (628/2394 nt) | malP | maltodextrin phosphorylase | |||||
* | ? | REL606 | 1760819 = | 58 (0.560) | 7 (0.080) | 5/42 | NT | 9.0% | coding (575/1701 nt) | ydiD | hypothetical protein |
? | REL606 | = 4434365 | 91 (1.010) | coding (58/1503 nt) | ytfR | predicted sugar transporter subunit: ATP‑binding component of ABC superfamily | |||||
* | ? | REL606 | = 1774429 | 43 (0.420) | 8 (0.090) | 4/40 | NT | 14.3% | coding (783/2388 nt) | pheT | phenylalanyl‑tRNA synthetase beta subunit |
? | REL606 | = 2595910 | 60 (0.700) | coding (551/1062 nt) | yphC | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding | |||||
* | ? | REL606 | 1822767 = | 84 (0.820) | 11 (0.140) | 3/38 | NT | 13.7% | coding (1422/1962 nt) | topB | DNA topoisomerase III |
? | REL606 | = 2900727 | 72 (0.890) | coding (86/771 nt) | yqeC | hypothetical protein | |||||
* | ? | REL606 | 1830987 = | 34 (0.330) | 6 (0.080) | 4/36 | NT | 13.9% | coding (221/1359 nt) | ydjE | predicted transporter |
? | REL606 | = 1996585 | 49 (0.640) | coding (1262/1644 nt) | yeeO | predicted multidrug efflux system | |||||
* | ? | REL606 | 1857572 = | NA (NA) | 13 (0.200) | 4/30 | NT | 17.7% | noncoding (509/1343 nt) | IS186 | repeat region |
? | REL606 | = 2118058 | 97 (0.940) | coding (720/2292 nt) | ECB_02004 | Replication gene A protein | |||||
* | ? | REL606 | = 1858460 | 47 (0.460) | 4 (0.050) | 4/40 | NT | 6.2% | intergenic (+227/+239) | insL‑4/yeaS | putative transposase insL for insertion sequence IS186/neutral amino‑acid efflux system |
? | REL606 | = 4005717 | 82 (0.960) | intergenic (+18/+265) | fre/fadA | NAD(P)H‑flavin reductase/acetyl‑CoA acetyltransferase | |||||
* | ? | REL606 | = 1889905 | 87 (0.850) | 12 (0.130) | 5/42 | NT | 17.4% | coding (1053/1374 nt) | yebQ | predicted transporter |
? | REL606 | 2379272 = | 38 (0.420) | coding (970/1014 nt) | usg | hypothetical protein | |||||
* | ? | REL606 | 1922884 = | 47 (0.460) | 13 (0.150) | 5/40 | NT | 20.9% | intergenic (+109/+232) | znuB/ruvB | high‑affinity zinc transporter membrane component/Holliday junction DNA helicase B |
? | REL606 | = 3625456 | 59 (0.690) | pseudogene (7/738 nt) | yhjQ | b3534; cell division protein (chromosome partitioning ATPase) | |||||
* | ? | REL606 | 1924695 = | 91 (0.890) | 6 (0.100) | 3/28 | NT | 9.9% | coding (52/612 nt) | ruvA | Holliday junction DNA helicase motor protein |
? | REL606 | = 2696376 | 56 (0.930) | coding (277/2145 nt) | nrdE | ribonucleotide‑diphosphate reductase alpha subunit | |||||
* | ? | REL606 | 1924962 = | 56 (0.540) | 10 (0.100) | 4/48 | NT | 12.3% | intergenic (‑216/‑59) | ruvA/yebB | Holliday junction DNA helicase motor protein/hypothetical protein |
? | REL606 | = 2078183 | 86 (0.840) | coding (1712/3306 nt) | yegE | predicted diguanylate cyclase, GGDEF domain signalling protein | |||||
* | ? | REL606 | 1947885 = | 81 (0.790) | 20 (0.200) | 9/46 | NT | 16.6% | coding (250/861 nt) | cheR | chemotaxis regulator, protein‑glutamate methyltransferase |
? | REL606 | = 3428485 | 123 (1.250) | coding (671/1338 nt) | yhfM | predicted fructoselysine transporter | |||||
* | ? | REL606 | = 1979076 | 88 (0.860) | 10 (0.110) | 4/44 | NT | 14.7% | coding (595/636 nt) | yedZ | hypothetical protein |
? | REL606 | = 2901067 | 35 (0.370) | coding (153/579 nt) | ygfJ | hypothetical protein | |||||
* | ? | REL606 | 2017663 = | 30 (0.290) | 18 (0.200) | 5/42 | NT | 23.5% | intergenic (‑158/+109) | yeeF/yeeY | predicted amino‑acid transporter/predicted DNA‑binding transcriptional regulator |
? | REL606 | 3912266 = | 91 (1.010) | intergenic (+46/‑94) | ilvL/ilvG | ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit | |||||
* | ? | REL606 | = 2017683 | 35 (0.340) | 14 (0.170) | 3/38 | NT | 18.8% | intergenic (‑178/+89) | yeeF/yeeY | predicted amino‑acid transporter/predicted DNA‑binding transcriptional regulator |
? | REL606 | = 2919373 | 93 (1.140) | intergenic (+6/+37) | idi/lysS | isopentenyl‑diphosphate delta‑isomerase/lysine tRNA synthetase, constitutive | |||||
* | ? | REL606 | = 2019883 | 85 (0.830) | 18 (0.210) | 5/40 | NT | 23.7% | intergenic (‑312/‑115) | yeeZ/hisL | predicted epimerase, with NAD(P)‑binding Rossmann‑fold domain/his operon leader peptide |
? | REL606 | = 3163334 | 45 (0.530) | coding (1630/2352 nt) | ygjK | predicted glycosyl hydrolase | |||||
* | ? | REL606 | 2064681 = | 76 (0.740) | 9 (0.120) | 3/36 | NT | 12.3% | coding (596/1218 nt) | wcaC | predicted glycosyl transferase |
? | REL606 | 4179328 = | 71 (0.920) | coding (213/591 nt) | yjaG | hypothetical protein | |||||
* | ? | REL606 | 2064682 = | 77 (0.750) | 9 (0.110) | 3/38 | NT | 10.8% | coding (595/1218 nt) | wcaC | predicted glycosyl transferase |
? | REL606 | = 3433062 | 88 (1.080) | pseudogene (399/621 nt) | yhfS | putative enzyme; b3376_1 | |||||
* | ? | REL606 | 2095315 = | 91 (0.890) | 5 (0.070) | 3/34 | NT | 6.2% | coding (744/1416 nt) | yegB | multidrug efflux system protein |
? | REL606 | 2237509 = | 87 (1.200) | intergenic (+34/+69) | proL/yejO | tRNA‑Pro/predicted autotransporter outer membrane protein | |||||
* | ? | REL606 | = 2131846 | 71 (0.690) | 4 (0.040) | 3/46 | NT | 7.0% | coding (848/1053 nt) | fbaB | fructose‑bisphosphate aldolase |
? | REL606 | 2517490 = | 38 (0.390) | coding (76/864 nt) | ypfJ | hypothetical protein | |||||
* | ? | REL606 | = 2151499 | 93 (0.910) | 15 (0.220) | 5/32 | NT | 19.5% | coding (25/3633 nt) | yehI | hypothetical protein |
? | REL606 | = 2649902 | NA (NA) | noncoding (776/2906 nt) | rrlG | 23S ribosomal RNA | |||||
* | ? | REL606 | 2169426 = | 52 (0.510) | 13 (0.160) | 6/38 | NT | 13.2% | coding (329/1158 nt) | yehY | predicted transporter subunit: membrane component of ABC superfamily |
? | REL606 | = 2730083 | 130 (1.600) | coding (2203/2253 nt) | hypF | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases | |||||
* | ? | REL606 | = 2175017 | 45 (0.440) | 18 (0.200) | 5/42 | NT | 24.6% | coding (1595/1716 nt) | dld | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
? | REL606 | = 4351424 | 71 (0.790) | intergenic (+32/‑106) | groEL/yjeI | chaperonin GroEL/hypothetical protein | |||||
* | ? | REL606 | 2176060 = | 63 (0.610) | 6 (0.080) | 3/36 | NT | 7.3% | coding (49/933 nt) | pbpG | D‑alanyl‑D‑alanine endopeptidase |
? | REL606 | 3882315 = | 105 (1.360) | coding (103/816 nt) | atpB | F0F1 ATP synthase subunit A | |||||
* | ? | REL606 | 2183026 = | 73 (0.710) | 12 (0.160) | 5/34 | NT | 15.2% | intergenic (+74/‑56) | yohK/cdd | predicted inner membrane protein/cytidine deaminase |
? | REL606 | = 3512380 | 82 (1.130) | intergenic (‑122/‑211) | yhhX/yhhY | predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase | |||||
* | ? | REL606 | = 2195257 | 78 (0.760) | 26 (0.260) | 7/46 | NT | 26.7% | coding (110/837 nt) | yeiG | predicted esterase |
? | REL606 | 2252861 = | 71 (0.690) | coding (142/264 nt) | napD | assembly protein for periplasmic nitrate reductase | |||||
* | ? | REL606 | = 2195257 | 78 (0.760) | 27 (0.290) | 5/44 | NT | 34.7% | coding (110/837 nt) | yeiG | predicted esterase |
? | REL606 | 2888888 = | 33 (0.320) | coding (520/879 nt) | xdhB | xanthine dehydrogenase, FAD‑binding subunit | |||||
* | ? | REL606 | = 2195257 | 78 (0.760) | 24 (0.240) | 9/46 | NT | 29.1% | coding (110/837 nt) | yeiG | predicted esterase |
? | REL606 | = 4616836 | 44 (0.430) | intergenic (+75/+232) | nadR/yjjK | nicotinamide‑nucleotide adenylyltransferase/fused predicted transporter subunits of ABC superfamily: ATP‑binding components | |||||
* | ? | REL606 | = 2197349 | 85 (0.830) | 22 (0.240) | 7/42 | NT | 18.7% | coding (659/1992 nt) | cirA | ferric iron‑catecholate outer membrane transporter |
? | REL606 | 3882314 = | 133 (1.290) | coding (104/816 nt) | atpB | F0F1 ATP synthase subunit A | |||||
* | ? | REL606 | = 2201223 | 61 (0.590) | 7 (0.090) | 3/36 | NT | 9.6% | coding (269/1050 nt) | yeiH | conserved inner membrane protein |
? | REL606 | = 3512381 | 86 (1.120) | intergenic (‑123/‑210) | yhhX/yhhY | predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase | |||||
* | ? | REL606 | = 2204224 | 68 (0.660) | 16 (0.200) | 4/38 | NT | 14.9% | coding (1109/1251 nt) | yeiJ | predicted nucleoside transporter |
? | REL606 | 2724133 = | 129 (1.590) | coding (227/774 nt) | srlR | DNA‑bindng transcriptional repressor | |||||
* | ? | REL606 | 2216192 = | 62 (0.600) | 25 (0.310) | 6/38 | NT | 27.2% | coding (1142/1182 nt) | setB | lactose/glucose efflux system |
? | REL606 | = 3911582 | 85 (1.040) | coding (218/1551 nt) | yifB | predicted bifunctional enzyme and transcriptional regulator | |||||
* | ? | REL606 | 2234598 = | 88 (0.860) | 15 (0.180) | 5/38 | NT | 16.6% | coding (538/1008 nt) | yejK | nucleoid‑associated protein NdpA |
? | REL606 | 3944634 = | 81 (1.000) | intergenic (+23/‑124) | proM/aslB | tRNA‑Pro/predicted regulator of arylsulfatase activity | |||||
* | ? | REL606 | 2283386 = | 61 (0.590) | 10 (0.110) | 3/44 | NT | 11.2% | intergenic (‑42/+107) | yfaA/gyrA | hypothetical protein/DNA gyrase subunit A |
? | REL606 | 2645822 = | 102 (1.080) | coding (151/273 nt) | yfiM | hypothetical protein | |||||
* | ? | REL606 | 2288961 = | 52 (0.510) | 12 (0.140) | 4/40 | NT | 19.0% | coding (1909/3753 nt) | yfaL | adhesin |
? | REL606 | = 3625456 | 59 (0.690) | pseudogene (7/738 nt) | yhjQ | b3534; cell division protein (chromosome partitioning ATPase) | |||||
* | ? | REL606 | 2312280 = | 75 (0.730) | 5 (0.050) | 3/44 | NT | 9.1% | intergenic (‑147/‑143) | ais/yfbE | hypothetical protein/uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
? | REL606 | = 4042610 | 31 (0.330) | intergenic (‑57/+10) | yshA/yihO | predicted outer membrane porin L/predited transporter | |||||
* | ? | REL606 | 2318764 = | 63 (0.610) | 11 (0.140) | 4/36 | NT | 13.6% | coding (1344/1653 nt) | arnT | 4‑amino‑4‑deoxy‑L‑arabinose transferase |
? | REL606 | 4219145 = | 92 (1.190) | intergenic (+483/‑112) | yjbH/yjbA | predicted porin/phosphate‑starvation‑inducible protein PsiE | |||||
* | ? | REL606 | 2327674 = | 62 (0.600) | 14 (0.160) | 5/42 | NT | 15.8% | coding (383/462 nt) | elaA | predicted acyltransferase with acyl‑CoA N‑acyltransferase domain |
? | REL606 | = 4527187 | 95 (1.060) | coding (1178/2637 nt) | fimD | outer membrane usher protein, type 1 fimbrial synthesis | |||||
* | ? | REL606 | = 2345628 | 69 (0.670) | 11 (0.120) | 6/44 | NT | 10.6% | coding (16/501 nt) | nuoE | NADH dehydrogenase subunit E |
? | REL606 | 3882315 = | 123 (1.310) | coding (103/816 nt) | atpB | F0F1 ATP synthase subunit A | |||||
* | ? | REL606 | 2377427 = | 84 (0.820) | 11 (0.120) | 6/42 | NT | 16.1% | coding (92/915 nt) | accD | acetyl‑CoA carboxylase subunit beta |
? | REL606 | 3367495 = | 41 (0.460) | intergenic (‑81/+26) | yhdN/rplQ | hypothetical protein/50S ribosomal protein L17 | |||||
* | ? | REL606 | 2389861 = | 74 (0.720) | 12 (0.150) | 5/38 | NT | 19.1% | coding (116/825 nt) | mepA | penicillin‑insensitive murein endopeptidase |
? | REL606 | = 2877079 | 43 (0.530) | intergenic (‑276/+39) | araE/kduD | arabinose transporter/2‑deoxy‑D‑gluconate 3‑dehydrogenase | |||||
* | ? | REL606 | = 2454481 | 67 (0.650) | 14 (0.140) | 6/46 | NT | 15.1% | coding (158/342 nt) | ECB_02307 | conserved hypothetical protein |
? | REL606 | = 4471806 | 97 (0.940) | coding (1485/1503 nt) | yjgR | predicted ATPase | |||||
* | ? | REL606 | 2487179 = | 54 (0.530) | 11 (0.170) | 3/30 | NT | 21.0% | coding (435/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase |
? | REL606 | = 3686151 | 49 (0.760) | coding (411/741 nt) | yiaT | hypothetical protein | |||||
* | ? | REL606 | = 2530544 | 66 (0.640) | 11 (0.120) | 5/42 | NT | 18.2% | coding (1232/1668 nt) | hyfG | hydrogenase 4, subunit |
? | REL606 | 3367495 = | 41 (0.460) | intergenic (‑81/+26) | yhdN/rplQ | hypothetical protein/50S ribosomal protein L17 | |||||
* | ? | REL606 | 2532852 = | 62 (0.600) | 3 (0.040) | 3/40 | NT | 4.7% | coding (127/2007 nt) | hyfR | DNA‑binding transcriptional activator, formate sensing |
? | REL606 | 4530131 = | 69 (0.810) | coding (410/903 nt) | fimH | minor component of type 1 fimbriae | |||||
* | ? | REL606 | 2533712 = | 95 (0.920) | 9 (0.130) | 3/32 | NT | 14.4% | coding (987/2007 nt) | hyfR | DNA‑binding transcriptional activator, formate sensing |
? | REL606 | 3554407 = | 44 (0.640) | coding (321/384 nt) | yhhH | hypothetical protein | |||||
* | ? | REL606 | 2556110 = | 67 (0.650) | 14 (0.170) | 5/38 | NT | 14.7% | coding (1060/1371 nt) | xseA | exodeoxyribonuclease VII large subunit |
? | REL606 | 3882315 = | 110 (1.350) | coding (103/816 nt) | atpB | F0F1 ATP synthase subunit A | |||||
* | ? | REL606 | = 2583271 | NA (NA) | 32 (0.530) | 3/28 | NT | 49.9% | intergenic (‑441/+11) | iscR/yfhQ | DNA‑binding transcriptional repressor/predicted methyltransferase |
? | REL606 | = 3686161 | 55 (0.540) | coding (401/741 nt) | yiaT | hypothetical protein | |||||
* | ? | REL606 | 2650606 = | NA (NA) | 12 (0.190) | 3/30 | NT | 17.1% | noncoding (72/2906 nt) | rrlG | 23S ribosomal RNA |
? | REL606 | = 2867475 | 93 (0.910) | coding (1008/1194 nt) | ygeD | predicted inner membrane protein | |||||
* | ? | REL606 | 2671676 = | 67 (0.650) | 9 (0.120) | 3/36 | NT | 13.7% | coding (328/594 nt) | grpE | heat shock protein |
? | REL606 | 4487631 = | 63 (0.820) | coding (453/1119 nt) | yjhC | predicted oxidoreductase | |||||
* | ? | REL606 | 2682742 = | NA (NA) | 39 (0.540) | 6/34 | NT | 45.9% | noncoding (135/768 nt) | IS1 | repeat region |
? | REL606 | 2703961 = | 65 (0.630) | coding (794/1185 nt) | ygaX | predicted transporter | |||||
* | ? | REL606 | 2698091 = | 73 (0.710) | 6 (0.070) | 3/40 | NT | 9.3% | coding (1992/2145 nt) | nrdE | ribonucleotide‑diphosphate reductase alpha subunit |
? | REL606 | 3668825 = | 56 (0.650) | coding (873/2031 nt) | malS | periplasmic alpha‑amylase precursor | |||||
* | ? | REL606 | 2703325 = | 45 (0.440) | 9 (0.120) | 3/36 | NT | 16.6% | coding (158/1185 nt) | ygaX | predicted transporter |
? | REL606 | = 4091236 | 57 (0.740) | coding (461/600 nt) | yiiQ | hypothetical protein | |||||
* | ? | REL606 | 2713428 = | 47 (0.520) | 102 (1.130) | 38/42 | NT | 68.5% | noncoding (77/93 nt) | serV | tRNA‑Ser |
? | REL606 | = 2774196 | NA (NA) | noncoding (1343/1343 nt) | IS186 | repeat region | |||||
* | ? | REL606 | = 2749601 | 109 (1.060) | 21 (0.230) | 6/42 | NT | 19.0% | coding (404/2079 nt) | fhlA | DNA‑binding transcriptional activator |
? | REL606 | 4351442 = | 84 (0.930) | intergenic (+50/‑88) | groEL/yjeI | chaperonin GroEL/hypothetical protein | |||||
* | ? | REL606 | 2750665 = | 112 (1.090) | 16 (0.250) | 4/30 | NT | 22.7% | coding (1468/2079 nt) | fhlA | DNA‑binding transcriptional activator |
? | REL606 | 3792209 = | 39 (0.610) | coding (315/414 nt) | ECB_03532 | hypothetical protein | |||||
* | ? | REL606 | = 2768160 | 116 (1.130) | 20 (0.210) | 7/44 | NT | 16.8% | coding (39/324 nt) | ygbE | conserved inner membrane protein |
? | REL606 | 4085858 = | 92 (0.980) | intergenic (+56/‑93) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F | |||||
* | ? | REL606 | = 2789283 | 65 (0.630) | 8 (0.080) | 4/46 | NT | 11.2% | coding (192/1278 nt) | yqcE | predicted transporter |
? | REL606 | 3161174 = | 67 (0.650) | coding (557/1071 nt) | ygjJ | hypothetical protein | |||||
* | ? | REL606 | = 2836222 | 59 (0.570) | 12 (0.120) | 7/46 | NT | 15.4% | coding (29/396 nt) | ygdD | conserved inner membrane protein |
? | REL606 | = 4349299 | 75 (0.760) | intergenic (‑166/‑110) | yjeH/groES | predicted transporter/co‑chaperonin GroES | |||||
* | ? | REL606 | 2840701 = | 74 (0.720) | 27 (0.270) | 8/46 | NT | 24.4% | coding (1097/1098 nt) | mltA | membrane‑bound lytic murein transglycosylase A |
? | REL606 | 3891539 = | 96 (0.970) | intergenic (‑85/‑138) | yieN/kup | fused predicted transcriptional regulator: sigma54 activator protein/conserved protein/potassium transporter | |||||
* | ? | REL606 | 2880569 = | 60 (0.580) | 11 (0.140) | 4/36 | NT | 19.1% | coding (101/1230 nt) | yqeG | predicted transporter |
? | REL606 | 3287064 = | 48 (0.620) | coding (1197/2337 nt) | arcB | hybrid sensory histidine kinase in two‑component regulatory system with ArcA | |||||
* | ? | REL606 | = 2881323 | 43 (0.420) | 10 (0.130) | 4/36 | NT | 12.7% | coding (855/1230 nt) | yqeG | predicted transporter |
? | REL606 | 3882315 = | 105 (1.360) | coding (103/816 nt) | atpB | F0F1 ATP synthase subunit A | |||||
* | ? | REL606 | = 2883502 | NA (NA) | 22 (0.270) | 4/38 | NT | 28.1% | noncoding (791/1255 nt) | IS3 | repeat region |
? | REL606 | 3001880 = | 71 (0.690) | coding (2317/2847 nt) | flu | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter | |||||
* | ? | REL606 | = 2900731 | 92 (0.900) | 9 (0.110) | 3/40 | NT | 13.3% | coding (82/771 nt) | yqeC | hypothetical protein |
? | REL606 | 4370910 = | 41 (0.480) | intergenic (+97/+173) | glyY/yjeS | tRNA‑Gly/predicted Fe‑S electron transport protein | |||||
* | ? | REL606 | 2908068 = | 60 (0.580) | 9 (0.110) | 4/38 | NT | 14.3% | coding (999/2871 nt) | xdhD | fused predicted xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit/Fe‑S binding subunit |
? | REL606 | 4123539 = | 60 (0.740) | coding (903/1080 nt) | frwC | predicted enzyme IIC component of PTS | |||||
* | ? | REL606 | 2926199 = | 70 (0.680) | 14 (0.180) | 5/36 | NT | 18.0% | coding (378/408 nt) | ygfX | hypothetical protein |
? | REL606 | 3944634 = | 75 (0.970) | intergenic (+23/‑124) | proM/aslB | tRNA‑Pro/predicted regulator of arylsulfatase activity | |||||
* | ? | REL606 | 2933125 = | 46 (0.450) | 11 (0.140) | 5/38 | NT | 16.9% | coding (1669/2874 nt) | gcvP | glycine dehydrogenase |
? | REL606 | = 3606341 | 72 (0.890) | coding (1517/2076 nt) | yhjG | predicted outer membrane biogenesis protein | |||||
* | ? | REL606 | = 2944816 | 47 (0.460) | 22 (0.210) | 8/48 | NT | 22.6% | coding (261/660 nt) | rpiA | ribose‑5‑phosphate isomerase A |
? | REL606 | 3912264 = | 104 (1.010) | intergenic (+44/‑96) | ilvL/ilvG | ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit | |||||
* | ? | REL606 | = 2949571 | 69 (0.670) | 15 (0.150) | 5/46 | NT | 14.6% | coding (834/996 nt) | argK | arginine/ornithine transport system ATPase |
? | REL606 | = 3728925 | 109 (1.110) | coding (59/960 nt) | yibQ | predicted polysaccharide deacetylase | |||||
* | ? | REL606 | 2962019 = | 71 (0.690) | 12 (0.160) | 4/34 | NT | 19.5% | coding (1189/1278 nt) | yggP | predicted dehydrogenase |
? | REL606 | 3792210 = | 49 (0.670) | coding (316/414 nt) | ECB_03532 | hypothetical protein | |||||
* | ? | REL606 | 2966042 = | 52 (0.510) | 5 (0.060) | 3/36 | NT | 9.1% | coding (1345/1992 nt) | tktA | transketolase 1, thiamin‑binding |
? | REL606 | 3780481 = | 61 (0.790) | coding (513/1359 nt) | ECB_03520 | conserved hypothetical protein | |||||
* | ? | REL606 | = 2966320 | 71 (0.690) | 9 (0.120) | 3/36 | NT | 10.0% | coding (1067/1992 nt) | tktA | transketolase 1, thiamin‑binding |
? | REL606 | 3882316 = | 109 (1.410) | coding (102/816 nt) | atpB | F0F1 ATP synthase subunit A | |||||
* | ? | REL606 | = 2979870 | 135 (1.310) | 6 (0.060) | 3/44 | NT | 6.2% | coding (962/981 nt) | yggR | predicted transporter |
? | REL606 | 4245169 = | 59 (0.630) | coding (456/1080 nt) | alr | alanine racemase | |||||
* | ? | REL606 | = 2981401 | 48 (0.470) | 13 (0.170) | 5/36 | NT | 15.6% | coding (553/705 nt) | yggS | predicted enzyme |
? | REL606 | 3882315 = | 105 (1.360) | coding (103/816 nt) | atpB | F0F1 ATP synthase subunit A | |||||
* | ? | REL606 | 2998284 = | 85 (0.830) | 9 (0.110) | 4/40 | NT | 12.9% | intergenic (+49/‑483) | ECB_02798/yeeP | conserved hypothetical protein/b1999; predicted GTP‑binding protein |
? | REL606 | 3832612 = | 51 (0.600) | coding (748/1149 nt) | dgoD | galactonate dehydratase | |||||
* | ? | REL606 | 3006451 = | 87 (0.850) | 9 (0.100) | 4/44 | NT | 11.8% | coding (461/819 nt) | yafZ | conserved protein |
? | REL606 | 4115747 = | 55 (0.580) | coding (1806/2181 nt) | katG | catalase/hydroperoxidase HPI(I) | |||||
* | ? | REL606 | 3016826 = | 44 (0.430) | 12 (0.160) | 5/36 | NT | 14.8% | coding (561/741 nt) | ECB_02817 | KpsU protein |
? | REL606 | 3882315 = | 105 (1.360) | coding (103/816 nt) | atpB | F0F1 ATP synthase subunit A | |||||
* | ? | REL606 | = 3040638 | 93 (0.910) | 11 (0.140) | 3/38 | NT | 14.8% | coding (649/810 nt) | pppA | bifunctional prepilin leader peptidase/ methylase |
? | REL606 | 4567447 = | 53 (0.650) | coding (1808/2151 nt) | yjiY | predicted inner membrane protein | |||||
* | ? | REL606 | = 3040639 | 97 (0.940) | 17 (0.220) | 5/36 | NT | 21.2% | coding (648/810 nt) | pppA | bifunctional prepilin leader peptidase/ methylase |
? | REL606 | 3224905 = | 54 (0.700) | coding (858/2517 nt) | yraJ | predicted outer membrane protein | |||||
* | ? | REL606 | = 3069621 | 69 (0.670) | 12 (0.140) | 4/40 | NT | 17.1% | coding (838/1500 nt) | pitB | phosphate transporter |
? | REL606 | = 3625456 | 59 (0.690) | pseudogene (7/738 nt) | yhjQ | b3534; cell division protein (chromosome partitioning ATPase) | |||||
* | ? | REL606 | 3092326 = | 61 (0.590) | 23 (0.240) | 8/44 | NT | 23.7% | coding (505/927 nt) | yqhG | hypothetical protein |
? | REL606 | 4085858 = | 92 (0.980) | intergenic (+56/‑93) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F | |||||
* | ? | REL606 | 3182813 = | 111 (1.080) | 7 (0.110) | 3/30 | NT | 10.7% | coding (97/405 nt) | yqjE | conserved inner membrane protein |
? | REL606 | 4217451 = | 48 (0.750) | coding (886/2097 nt) | yjbH | predicted porin | |||||
* | ? | REL606 | 3190470 = | 58 (0.560) | 12 (0.120) | 5/46 | NT | 19.7% | coding (511/1269 nt) | yhaO | predicted transporter |
? | REL606 | 4585732 = | 42 (0.430) | coding (509/1023 nt) | yjjN | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding | |||||
* | ? | REL606 | 3258154 = | 65 (0.630) | 8 (0.110) | 5/34 | NT | 13.0% | coding (1151/1338 nt) | glmM | phosphoglucosamine mutase |
? | REL606 | 3281934 = | 61 (0.840) | coding (122/492 nt) | ptsN | sugar‑specific enzyme IIA component of PTS | |||||
* | ? | REL606 | 3265224 = | 32 (0.310) | 6 (0.070) | 3/38 | NT | 9.0% | coding (1028/1434 nt) | dacB | D‑alanyl‑D‑alanine carboxypeptidase |
? | REL606 | = 3603631 | 96 (1.180) | coding (778/1014 nt) | yhjD | conserved inner membrane protein | |||||
* | ? | REL606 | 3281469 = | 113 (1.100) | 21 (0.220) | 7/44 | NT | 18.2% | coding (62/288 nt) | yhbH | predicted ribosome‑associated, sigma 54 modulation protein |
? | REL606 | = 4043982 | 85 (0.900) | coding (42/1404 nt) | yihO | predited transporter | |||||
* | ? | REL606 | 3302668 = | 53 (0.520) | 10 (0.120) | 6/38 | NT | 13.9% | intergenic (‑281/‑99) | nanR/dcuD | transcriptional regulator NanR/predicted transporter |
? | REL606 | 4085857 = | 82 (1.010) | intergenic (+55/‑94) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F | |||||
* | ? | REL606 | = 3310921 | 77 (0.750) | 8 (0.110) | 3/34 | NT | 15.0% | coding (824/1068 nt) | degS | serine endoprotease, periplasmic |
? | REL606 | 4603001 = | 36 (0.490) | coding (287/780 nt) | yjjV | predicted DNase | |||||
* | ? | REL606 | = 3320231 | NA (NA) | 11 (0.180) | 3/28 | NT | 25.5% | intergenic (‑312/+118) | tldD/yhdP | predicted peptidase/conserved membrane protein, predicted transporter |
? | REL606 | = 3686161 | 55 (0.540) | coding (401/741 nt) | yiaT | hypothetical protein | |||||
* | ? | REL606 | 3331631 = | 78 (0.760) | 5 (0.070) | 4/34 | NT | 9.4% | coding (257/975 nt) | yhdH | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding |
? | REL606 | = 4600665 | 41 (0.560) | coding (36/606 nt) | osmY | periplasmic protein | |||||
* | ? | REL606 | 3411408 = | 52 (0.510) | 21 (0.310) | 4/32 | NT | 37.7% | coding (302/1023 nt) | yheT | predicted hydrolase |
? | REL606 | 3433812 = | NA (NA) | noncoding (418/768 nt) | IS1 | repeat region | |||||
* | ? | REL606 | 3476747 = | 59 (0.570) | 10 (0.120) | 3/38 | NT | 12.0% | coding (1924/2085 nt) | malQ | 4‑alpha‑glucanotransferase (amylomaltase) |
? | REL606 | 4031309 = | 100 (1.230) | coding (968/1374 nt) | hemN | coproporphyrinogen III oxidase | |||||
* | ? | REL606 | 3483684 = | 62 (0.600) | 11 (0.140) | 5/36 | NT | 15.9% | coding (2000/2706 nt) | malT | transcriptional regulator MalT |
? | REL606 | = 3677027 | 70 (0.910) | coding (478/987 nt) | yiaO | predicted transporter | |||||
* | ? | REL606 | = 3517490 | 69 (0.670) | 13 (0.130) | 8/48 | NT | 14.7% | coding (10/1743 nt) | ggt | gamma‑glutamyltranspeptidase periplasmic precursor |
? | REL606 | = 4266659 | 82 (0.800) | intergenic (‑355/‑38) | acs/nrfA | acetyl‑coenzyme A synthetase/nitrite reductase, formate‑dependent, cytochrome | |||||
* | ? | REL606 | = 3545201 | 81 (0.790) | 9 (0.120) | 3/36 | NT | 13.7% | coding (847/1575 nt) | nikA | nickel transporter subunit |
? | REL606 | = 4576439 | 53 (0.690) | coding (2/381 nt) | hpaF | 5‑carboxymethyl‑2‑hydroxymuconate delta‑isomerase | |||||
* | ? | REL606 | 3579044 = | 7 (0.070) | 29 (0.320) | 6/42 | NT | 37.4% | intergenic (+703/‑174) | gor/arsR | glutathione reductase/DNA‑binding transcriptional repressor |
? | REL606 | 3912266 = | 91 (1.010) | intergenic (+46/‑94) | ilvL/ilvG | ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit | |||||
* | ? | REL606 | 3600745 = | 41 (0.400) | 9 (0.120) | 3/34 | NT | 18.7% | intergenic (+12/+39) | treF/yhjB | cytoplasmic trehalase/predicted DNA‑binding response regulator in two‑component regulatory system |
? | REL606 | 3792210 = | 49 (0.670) | coding (316/414 nt) | ECB_03532 | hypothetical protein | |||||
* | ? | REL606 | 3615477 = | 121 (1.180) | 11 (0.110) | 4/48 | NT | 10.1% | coding (3189/3474 nt) | bcsC | cellulose synthase subunit |
? | REL606 | = 3947083 | 74 (0.720) | coding (724/1656 nt) | aslA | acrylsulfatase‑like enzyme | |||||
* | ? | REL606 | = 3625460 | 64 (0.620) | 22 (0.260) | 7/40 | NT | 30.7% | pseudogene (3/738 nt) | yhjQ | b3534; cell division protein (chromosome partitioning ATPase) |
? | REL606 | = 3992020 | 46 (0.540) | coding (141/510 nt) | ECB_03720 | conserved hypothetical protein | |||||
* | ? | REL606 | = 3630716 | NA (NA) | 79 (0.770) | 38/48 | NT | NA | intergenic (‑171/‑305) | ldrD/yhjV | toxic polypeptide, small/predicted transporter |
? | REL606 | = 3652533 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
* | ? | REL606 | 3656754 = | 92 (0.900) | 4 (0.070) | 3/28 | NT | 7.1% | coding (410/996 nt) | yiaH | conserved inner membrane protein |
? | REL606 | = 4045305 | 51 (0.850) | coding (165/1407 nt) | yihP | predicted transporter | |||||
* | ? | REL606 | = 3676501 | 106 (1.030) | 13 (0.130) | 7/46 | NT | 12.1% | coding (1242/1278 nt) | yiaN | predicted transporter |
? | REL606 | = 3822225 | 91 (0.890) | coding (203/1323 nt) | glvG | predicted 6‑phospho‑beta‑glucosidase | |||||
* | ? | REL606 | = 3686152 | 55 (0.540) | 7 (0.070) | 3/46 | NT | 10.7% | coding (410/741 nt) | yiaT | hypothetical protein |
? | REL606 | = 4031953 | 64 (0.650) | intergenic (+238/+174) | hemN/glnG | coproporphyrinogen III oxidase/fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
* | ? | REL606 | = 3686160 | 56 (0.540) | 10 (0.160) | 3/30 | NT | 30.3% | coding (402/741 nt) | yiaT | hypothetical protein |
? | REL606 | 4048325 = | 11 (0.170) | coding (224/927 nt) | yihR | predicted aldose‑1‑epimerase | |||||
* | ? | REL606 | = 3686160 | 56 (0.540) | 23 (0.230) | 5/46 | NT | 30.0% | coding (402/741 nt) | yiaT | hypothetical protein |
? | REL606 | = 4467594 | NA (NA) | intergenic (‑281/+73) | holC/pepA | DNA polymerase III subunit chi/leucyl aminopeptidase | |||||
* | ? | REL606 | 3698836 = | NA (NA) | 15 (0.210) | 4/34 | NT | 13.9% | coding (1960/4134 nt) | rhsA | rhsA element core protein RshA |
? | REL606 | 3882308 = | 131 (1.270) | coding (110/816 nt) | atpB | F0F1 ATP synthase subunit A | |||||
* | ? | REL606 | = 3704935 | 71 (0.690) | 362 (5.280) | 9/32 | NT | 88.4% | intergenic (+1603/+1) | yibG/yibH | hypothetical protein/hypothetical protein |
? | REL606 | = 3741809 | NA (NA) | noncoding (157/768 nt) | IS1 | repeat region | |||||
* | ? | REL606 | = 3741965 | NA (NA) | 80 (0.780) | 37/48 | NT | 93.0% | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 3742143 = | 6 (0.060) | pseudogene (223/405 nt) | waaT | UDP‑galactose:(Glucosyl) LPS alpha1,2‑galactosyltransferase WaaT | |||||
* | ? | REL606 | = 3744020 | 103 (1.000) | 12 (0.160) | 5/36 | NT | 18.0% | coding (300/807 nt) | waaP | kinase that phosphorylates core heptose of lipopolysaccharide |
? | REL606 | = 3861481 | 32 (0.420) | coding (1109/1617 nt) | yieC | carbohydrate‑specific outer membrane porin, cryptic | |||||
* | ? | REL606 | = 3757525 | 76 (0.740) | 22 (0.260) | 8/40 | NT | 23.1% | coding (295/618 nt) | yicG | conserved inner membrane protein |
? | REL606 | 4085859 = | 83 (0.970) | intergenic (+57/‑92) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F | |||||
* | ? | REL606 | 3780471 = | 81 (0.790) | 7 (0.120) | 4/28 | NT | 14.0% | coding (503/1359 nt) | ECB_03520 | conserved hypothetical protein |
? | REL606 | = 4600662 | 39 (0.650) | coding (33/606 nt) | osmY | periplasmic protein | |||||
* | ? | REL606 | 3809862 = | 86 (0.840) | 7 (0.100) | 4/34 | NT | 8.2% | coding (207/1503 nt) | uhpB | sensory histidine kinase in two‑component regulatory sytem with UhpA |
? | REL606 | 3882315 = | 96 (1.320) | coding (103/816 nt) | atpB | F0F1 ATP synthase subunit A | |||||
* | ? | REL606 | 3820609 = | 84 (0.820) | 7 (0.100) | 3/34 | NT | 12.1% | coding (425/924 nt) | yidL | predicted DNA‑binding transcriptional regulator |
? | REL606 | = 4248913 | 42 (0.580) | coding (568/714 nt) | aphA | acid phosphatase/phosphotransferase, class B, non‑specific | |||||
* | ? | REL606 | 3826321 = | 43 (0.420) | 5 (0.060) | 3/42 | NT | 9.5% | coding (314/1662 nt) | yidE | hypothetical protein |
? | REL606 | = 3885956 | 58 (0.650) | coding (39/1890 nt) | gidA | glucose‑inhibited division protein A | |||||
* | ? | REL606 | = 3866966 | 86 (0.840) | 18 (0.180) | 8/46 | NT | 20.6% | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
? | REL606 | = 3887469 | 56 (0.570) | intergenic (‑105/‑47) | asnC/asnA | DNA‑binding transcriptional dual regulator/asparagine synthetase AsnA | |||||
* | ? | REL606 | = 3894996 | NA (NA) | 5 (0.050) | 5/46 | NT | 5.3% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | = 4415712 | 90 (0.910) | coding (850/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
* | ? | REL606 | 3944627 = | 101 (0.980) | 9 (0.120) | 3/34 | NT | 13.8% | intergenic (+16/‑131) | proM/aslB | tRNA‑Pro/predicted regulator of arylsulfatase activity |
? | REL606 | = 4275759 | 41 (0.560) | coding (189/690 nt) | yjcO | hypothetical protein | |||||
* | ? | REL606 | 4085856 = | 100 (0.970) | 24 (0.250) | 5/44 | NT | 23.2% | intergenic (+54/‑95) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F |
? | REL606 | 4214283 = | 67 (0.710) | coding (1595/1650 nt) | pgi | glucose‑6‑phosphate isomerase | |||||
* | ? | REL606 | = 4086554 | 71 (0.690) | 6 (0.070) | 5/42 | NT | 6.5% | coding (604/903 nt) | fieF | ferrous iron efflux protein F |
? | REL606 | 4620932 = | 111 (1.230) | intergenic (+49/‑41) | slt/trpR | lytic murein transglycosylase, soluble/Trp operon repressor | |||||
* | ? | REL606 | = 4154898 | 72 (0.700) | 7 (0.080) | 5/42 | NT | 8.7% | intergenic (‑261/‑101) | coaA/thrU | pantothenate kinase/tRNA‑Thr |
? | REL606 | 4351442 = | 84 (0.930) | intergenic (+50/‑88) | groEL/yjeI | chaperonin GroEL/hypothetical protein | |||||
* | ? | REL606 | = 4187069 | 83 (0.810) | 13 (0.170) | 5/36 | NT | 15.8% | coding (49/1590 nt) | purH | bifunctionalphosphoribosylaminoimidazolecarboxam ide formyltransferase/IMP cyclohydrolase |
? | REL606 | = 4402608 | 76 (0.990) | intergenic (+67/+62) | sgaE/yjfY | L‑ribulose 5‑phosphate 4‑epimerase/hypothetical protein | |||||
* | ? | REL606 | = 4551446 | NA (NA) | 9 (0.090) | 8/46 | NT | 7.0% | noncoding (768/768 nt) | IS1 | repeat region |
? | REL606 | 4560889 = | 119 (1.210) | coding (135/1590 nt) | hsdM | DNA methylase M |