New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1 =0 (0.000)138 (1.340) 44/48 NT 100% intergenic (–/‑189) –/thrL –/thr operon leader peptide
?REL606 = 4629812 0 (0.000)intergenic (+24/–) lasT/– predicted rRNA methyltransferase/–

Only 100 of 175 total aligned reads displayed.

TCACCAAATAAAAAACGCCTTAGTAAGTATTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/4629778‑4629812
                                  |                                  
tCACCAAATAAAAAACGCCTTAGTAAGTATTTTTc                                    <  1:20500032/35‑1 (MQ=255)
 cACCAAATAAAAAACGCCTTAGTAAGTATTTTTCa                                   >  1:15919210‑M2/1‑34 (MQ=255)
 cACCAAATAAAAAACGCCTTAGTAAGTATTTTTCa                                   <  1:1159136‑M2/35‑2 (MQ=255)
  aCCAAATAAAAAACGCCTTAGTAAGTATTTTTCag                                  >  1:15561467‑M2/1‑33 (MQ=255)
  aCCAAATAAAAAACGCCTTAGTAAGTATTTTTCag                                  >  1:20391163‑M2/1‑33 (MQ=255)
  aCCAAATAAAAAACGCCTTAGTAAGTATTTTTCag                                  >  1:2836537‑M2/1‑33 (MQ=255)
   ccAAATAAAAAACGCCTTAGTAAGTATTTTTCagc                                 >  1:7785479‑M2/1‑32 (MQ=255)
   ccAAATAAAAAACGCCTTAGTAAGTATTTTTCagc                                 >  1:4523013‑M2/1‑32 (MQ=255)
     aaaTAAAAAACGCCTTAGTAAGTATTTTTCagctt                               <  1:1659285‑M2/35‑6 (MQ=255)
     aaaTAAAAAACGCCTTAGTAAGTATTTTTCagctt                               >  1:5612121‑M2/1‑30 (MQ=255)
      aaTAAAAAACGCCTTAGTAAGTATTTTTCagcttt                              >  1:3637612‑M2/1‑29 (MQ=255)
      aaTAAAAAACGCCTTAGTAAGTATTTTTCagcttt                              <  1:15657492‑M2/35‑7 (MQ=255)
      aaTAAAAAACGCCTTAGTAAGTATTTTTCagcttt                              >  1:20161296‑M2/1‑29 (MQ=255)
       aTAAAAAACGCCTTAGTAAGTATTTTTCagctttt                             >  1:8060942‑M2/1‑28 (MQ=255)
       aTAAAAAACGCCTTAGTAAGTATTTTTCagctttt                             >  1:1689522‑M2/1‑28 (MQ=255)
        tAAAAAACGCCTTAGTAAGTATTTTTCagcttttc                            >  1:6297113‑M2/1‑27 (MQ=255)
        tAAAAAACGCCTTAGTAAGTATTTTTCagcttttc                            >  1:8182524‑M2/1‑27 (MQ=255)
        tAAAAAACGCCTTAGTAAGTATTTTTCagcttttc                            >  1:3799087‑M2/1‑27 (MQ=255)
        tAAAAAACGCCTTAGTAAGTATTTTTCagcttttc                            >  1:11216469‑M2/1‑27 (MQ=255)
        tAAAAAACGCCTTAGTAAGTATTTTTCagcttttc                            >  1:3747789‑M2/1‑27 (MQ=255)
         aaaaaaCGCCTTAGTAAGTATTTTTCagctcttca                           <  1:9023592‑M2/35‑10 (MQ=255)
          aaaaaCGCCTTAGTAAGTATTTTTCagcttttcat                          >  1:17017762‑M2/1‑25 (MQ=255)
          aaaaaCGCCTTAGTAAGTATTTTTCagcttttcat                          >  1:4926768‑M2/1‑25 (MQ=255)
           aaaaCGCCTTAGTAAGTATTTTTCagcttttcatt                         >  1:7641035‑M2/1‑24 (MQ=255)
           aaaaCGCCTTAGTAAGTATTTTTCagcttttcatt                         >  1:8429812‑M2/1‑24 (MQ=255)
            aaaCGCCTTAGTAAGTATTTTTCagcttttcattc                        <  1:8836985‑M2/35‑13 (MQ=255)
            aaaCGCCTTAGTAAGTATTTTTCagcttttcattc                        <  1:7157‑M2/35‑13 (MQ=255)
             aaCGCCTTAGTAAGTATTTTTCagcttttcattct                       >  1:11379169‑M2/1‑22 (MQ=255)
             aaCGCCTTAGTAAGTATTTTTCagcttttcattct                       >  1:18771194‑M2/1‑22 (MQ=255)
             aaCGCCTTAGTAAGTATTTTTCagcttttcattct                       >  1:17690743‑M2/1‑22 (MQ=255)
             aaCGCCTTAGTAAGTATTTTTCagcttttcattct                       <  1:6441600‑M2/35‑14 (MQ=255)
             aaCGCCTTAGTAAGTATTTTTCagcttttcattct                       >  1:15645208‑M2/1‑22 (MQ=255)
              aCGCCTTAGTAAGTATTTTTCagcttttcattctg                      >  1:14569816‑M2/1‑21 (MQ=255)
              aCGCCTTAGTAAGTATTTTTCagcttttcattctg                      >  1:1318703‑M2/1‑21 (MQ=255)
              aCGCCTTAGTAAGTATTTTTCagcttttcattctg                      <  1:3021842‑M2/35‑15 (MQ=255)
              aCGCCTTAGTAAGTATTTTTCagcttttcattctg                      >  1:3314504‑M2/1‑21 (MQ=255)
              aCGCCTTAGTAAGTATTTTTCagcttttcattctg                      <  1:699895‑M2/35‑15 (MQ=255)
              aCGCCTTAGTAAGCATTTTTCagcttttcattctg                      <  1:19762767‑M2/35‑15 (MQ=255)
               cGCCTTAGTAAGTATTTTTCagcttttcattctga                     <  1:7357259‑M2/35‑16 (MQ=255)
               cGCCTTAGTAAGTATTTTTCagcttttcattctga                     <  1:17243050‑M2/35‑16 (MQ=255)
               cGCCTTAGTAAGTATTTTTCagcttttcattctga                     >  1:19551784‑M2/1‑20 (MQ=255)
                 ccTTAGTAAGTATTTTTCagcttttcattctgact                   <  1:12794744‑M2/35‑18 (MQ=255)
                 ccTTAGTAAGTATTTTTCagcttttcattctgact                   >  1:13759871‑M2/1‑18 (MQ=255)
                 ccTTAGTAAGTATTTTTCagcttttcattctgact                   <  1:461549‑M2/35‑18 (MQ=255)
                  cTTAGTAAGTATTTTTCagcttttcattctgactg                  >  1:3616282‑M2/1‑17 (MQ=255)
                  cTTAGTAAGTATTTTTCagcttttcattctgactg                  >  1:5315748‑M2/1‑17 (MQ=255)
                  cTTAGTAAGTATTTTTCagcttttcattctgactg                  >  1:9682316‑M2/1‑17 (MQ=255)
                  cTTAGTAAGTATTTTTCagcttttcattctgactg                  <  1:16227911‑M2/35‑19 (MQ=255)
                   ttAGTAAGTATTTTTCagcttttcattctgactgc                 <  1:5753221‑M2/35‑20 (MQ=255)
                   ttAGTAAGTATTTTTCagcttttcattctgactgc                 >  1:7874839‑M2/1‑16 (MQ=255)
                   ttAGTAAGTATTTTTCagcttttcattctgactgc                 >  1:522044‑M2/1‑16 (MQ=255)
                    tAGTAAGTATTTTTCagcttttcattctgactgca                <  1:11067715‑M2/35‑21 (MQ=255)
                    tAGTAAGTATTTTTCagcttttcattctgactgca                <  1:10690759‑M2/35‑21 (MQ=255)
                    tAGTAAGTATTTTTCagcttttcattctgactgca                >  1:2919640‑M2/1‑15 (MQ=255)
                    tAGTAAGTATTTTTCagcttttcattctgactgca                <  1:20013663‑M2/35‑21 (MQ=255)
                     agtaagtaTTTTTCagcttttcattctgactgcaa               <  1:20248857‑M2/35‑22 (MQ=255)
                     agtaagtaTTTTTCagcttttcattctgactgcaa               <  1:13419192‑M2/35‑22 (MQ=255)
                     agtaagtaTTTTTCagcttttcattctgactgcaa               >  1:14888647‑M2/1‑14 (MQ=255)
                      gtaagtaTTTTTCagcttttcattctgactgcaac              >  1:20463859‑M2/1‑13 (MQ=255)
                      gtaagtaTTTTTCagcttttcattctgactgcaac              >  1:15888911‑M2/1‑13 (MQ=255)
                       taagtaTTTTTCagcttttcattctgactgcaacg             <  1:7709741‑M2/35‑24 (MQ=255)
                       taagtaTTTTTCagcttttcattctgactgcaacg             <  1:5239187‑M2/35‑24 (MQ=255)
                       taagtaTTTTTCagcttttcattctgactgcaacg             <  1:13362912‑M2/35‑24 (MQ=255)
                       taagtaTTTTTCagcttttcattctgactgcaacg             >  1:179734‑M2/1‑12 (MQ=255)
                       taagtaTTTTTCagcttttcattctgactgcaacg             <  1:5874184‑M2/35‑24 (MQ=255)
                       taagtaTTTTTCagcttttcattctgactgcaacg             >  1:14175845‑M2/1‑12 (MQ=255)
                       taagtaTTTTTCagcttttcattctgactgcaacg             >  1:6004016‑M2/1‑12 (MQ=255)
                        aagtaTTTTTCagcttttcattctgactgcaacgg            <  1:13132585‑M2/35‑25 (MQ=255)
                        aagtaTTTTTCagcttttcattctgactgcaacgg            <  1:13949850‑M2/35‑25 (MQ=255)
                        aagtaTTTTTCagcttttcattctgactgcaacgg            <  1:14663728‑M2/35‑25 (MQ=255)
                        aagtaTTTTTCagcttttcattctgactgcaacgg            <  1:15181822‑M2/35‑25 (MQ=255)
                        aagtaTTTTTCagcttttcattctgactgcaacgg            <  1:19716525‑M2/35‑25 (MQ=255)
                         agtaTTTTTCagcttttcattctgactgcaacggg           >  1:12633690‑M2/1‑10 (MQ=255)
                         agtaTTTTTCagcttttcattctgactgcaacggg           <  1:16324393‑M2/35‑26 (MQ=255)
                         agtaTTTTTCagcttttcattctgactgcaacggg           <  1:1839053‑M2/35‑26 (MQ=255)
                         agtaTTTTTCagcttttcattctgactgcaacggg           <  1:19625990‑M2/35‑26 (MQ=255)
                         agtaTTTTTCagcttttcattctgactgcaacggg           <  1:10253143‑M2/35‑26 (MQ=255)
                         agtaTTTTTCagcttttcattctgactgcaacggg           >  1:910186‑M2/1‑10 (MQ=255)
                          nnaTTNNTCagcttttcattctgactgcaacgggc          >  1:20258472‑M2/1‑9 (MQ=255)
                          gtaTTTTTCagcttttcattctgactgcaacgggc          >  1:15072621‑M2/1‑9 (MQ=255)
                          gtaTTTTTCagcttttcattctgactgcaacgggc          >  1:12121598‑M2/1‑9 (MQ=255)
                          gtaTTTTTCagcttttcattctgactgcaacgggc          <  1:8322326‑M2/35‑27 (MQ=255)
                          gtaTTTTTCagcttttcattctgactgcaacgggc          >  1:4901699‑M2/1‑9 (MQ=255)
                          gtaTTTTTCagcttttcattctgactgcaacgggc          <  1:13672419‑M2/35‑27 (MQ=255)
                           taTTTTTCagcttttcattctgactgcaacgggca         <  1:17138680‑M2/35‑28 (MQ=255)
                            aTTTTTCagcttttcattctgactgcaacgggcaa        <  1:10408355‑M2/35‑29 (MQ=255)
                            aTTTTTCagcttttcattctgactgaaacgggcaa        >  1:8957497‑M2/1‑7 (MQ=255)
                             tttttCagcttttcattctgactgcaacgggcaat       >  1:14200957‑M2/1‑6 (MQ=255)
                             tttttCagcttttcattctgactgcaacgggcaat       >  1:9580031‑M2/1‑6 (MQ=255)
                              ttttCagcttttcattctgactgcaacgggcaata      <  1:3983259‑M2/35‑31 (MQ=255)
                               tttCagcttttcattctgactgcaacgggcaatat     >  1:12019818‑M2/1‑4 (MQ=255)
                               tttCagcttttcattctgactgcaacgggcaatat     <  1:20467417‑M2/35‑32 (MQ=255)
                                ttCagcttttcattctgactgcaacgggcaatatg    >  1:989113‑M2/1‑3 (MQ=255)
                                ttCagcttttcattctgactgcaacgggcaatatg    <  1:5455580‑M2/35‑33 (MQ=255)
                                 tCagcttttcattctgactgcaacgggcaatatgt   >  1:18217169‑M2/1‑2 (MQ=255)
                                  cagcttttcattctgactgcaacgggcaatatgtc  <  1:6491259‑M2/35‑35 (MQ=255)
                                  cagcttttcattctgactgcaacgggcaatatgtc  <  1:4261549‑M2/35‑35 (MQ=255)
                                  cagcttttcattctgactgcaacgggcaatatgtc  >  1:9643794‑M2/1‑1 (MQ=255)
                                  cagcttttcattctgactgcaacgggcaatatgtc  >  1:13847329‑M2/1‑1 (MQ=255)
                                  cagcttttcattctgactgcaacgggcaatatgtc  >  1:10155585‑M2/1‑1 (MQ=255)
                                  |                                  
TCACCAAATAAAAAACGCCTTAGTAAGTATTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/4629778‑4629812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.