New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422590 =83 (0.810)4 (0.040) 4/46 NT 6.1% intergenic (‑277/+185) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter
?REL606 801538 = 45 (0.440)coding (346/1290 nt) bioA adenosylmethionine‑8‑amino‑7‑oxononanoate transaminase

TTTTCCCCCCCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/422604‑422590
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCTACGGAACCGGAGTCCGCGAGAAAAACGCA  >  REL606/801538‑801571
               |                                  
TTTTCCCCCCCTCCCCCCGCTACGGAACCGGAGTC                 <  1:6554989/35‑1
  TTCCCCCCCTCCCCCCGCTACGGAACCGGAGTCCG               <  1:9579743/35‑1
      CCCCCTCCCCCCGCTACGGAACCGGAGTCCGCGAG           <  1:18478999/35‑1
       CCCCTCCCCCCGCTACGGAACCGGAGTCCGCGAGA          <  1:4595455/35‑1
         cccCCCCCCGCTACGGAACCGGAGTCCGCGAGAAA        <  1:12677019/32‑1
           ttCCCCCGCTACGGAACCGGAGTCCGCGAGAAAAA      <  1:3609099/33‑1
            ctCCCCGCTACGGAACCGGAGTCCGCGAGAAAAAC     <  1:1149238/33‑1
            ccaCCCGCTACGGAACCGGAGTCCGCGAGAAAAAC     <  1:12872165/32‑1
            CCCCCCGCTACGGAACCGGAGTCCGCGAGAAAAAC     <  1:12184170/35‑1
            CCCCCCGCTACGGAACCGGAGTCCGCGAGAAAAAC     <  1:17464988/35‑1
            CCCCCCGCTACGGAACCGGAGTCCGCGAGAAAAAC     <  1:18608617/35‑1
            CCCCCCGCTACGGAACCGGAGTCCGCGAGAAAAAC     <  1:6911348/35‑1
              CCCCGCTACGGAACCGGAGTCCGCGAGAAAAACGC   <  1:6223005/35‑1
               CCCGCTACGGAACCGGAGTCCGCGAGAAAAACGCA  <  1:18668188/35‑1
               |                                  
TTTTCCCCCCCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/422604‑422590
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCTACGGAACCGGAGTCCGCGAGAAAAACGCA  >  REL606/801538‑801571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.