New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2283386 = | 61 (0.590) | 10 (0.110) | 3/44 | NT | 11.2% | intergenic (‑42/+107) | yfaA/gyrA | hypothetical protein/DNA gyrase subunit A |
? | REL606 | 2645822 = | 102 (1.080) | coding (151/273 nt) | yfiM | hypothetical protein |
Only 100 of 155 total aligned reads displayed.
TGCCATGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCGA > REL606/2645788‑2645856 | tGCCATGTTTGGATTGATGTTCTCTGTCAGTTTgg < 1:3796939/35‑1 (MQ=255) tGCCATGTTTGGATTGATGTTCTCTGTCAGTTTgg > 1:1235772/1‑35 (MQ=255) tttgtcgtattagggcacggtaaagtttggctggg > 1:14269404‑M2/34‑35 (MQ=255) tttgtcgtattagggcacggtaaagtttggctggg > 1:12732516‑M2/34‑35 (MQ=255) gCCATGTTTGGATTGATGTTCTCTGTCAGTTTggg < 1:13907063/35‑1 (MQ=255) ttgtcgtattagggcacggtaaagtttggctgggg > 1:16613256‑M2/33‑35 (MQ=255) ccATGTTTGGATTGATGTTCTCTGTCAGTTTgggg < 1:5315527/35‑1 (MQ=255) ccATGTTTGGATTGATGTTCTCTGTCAGTTTgggg < 1:7622020/35‑1 (MQ=255) cATGTTTGGATTGATGTTCTCTGTCAGTTTggggg > 1:11081999/1‑35 (MQ=255) gtcgtattagggcacggtaaagtttggctggggcg > 1:8655983‑M2/31‑33 (MQ=255) aTGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGc > 1:17665633/1‑35 (MQ=255) tcgtattagggcacggtaaagtttggctggggccc > 1:1656956‑M2/30‑32 (MQ=255) tcgtattagggcacggtaaagtttggctgGGGGCg > 1:17086886‑M2/30‑35 (MQ=255) tcgtattagggcacggtaaagtttggctgGGGCCg > 1:10468763‑M2/30‑35 (MQ=255) tGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCg < 1:6408291/35‑1 (MQ=255) tGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCg > 1:12050609/1‑35 (MQ=255) gTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCGt < 1:15864203/35‑1 (MQ=255) cgtattagggcacggtaaagtttggctgGGGGcgg > 1:18772611‑M2/29‑34 (MQ=255) cgtattagggcacggtaaagtttggctgGGGCcgg > 1:5725753‑M2/29‑34 (MQ=255) cgtattagggcacggtaaagtttggctgGGGCcgg > 1:17787904‑M2/29‑34 (MQ=255) tttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTc > 1:153474/1‑35 (MQ=255) tttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTc > 1:17948090/1‑35 (MQ=255) tttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTc > 1:6939315/1‑35 (MQ=255) gtattagggcacggtaaagtttggctgGGGgcggg > 1:8839604‑M2/28‑33 (MQ=255) ttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCa > 1:7149439/1‑35 (MQ=255) ttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCa < 1:14696732/35‑1 (MQ=255) ttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCa > 1:18328688/1‑35 (MQ=255) ttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCa > 1:18875286/1‑35 (MQ=255) tattagggcacggtaaagtttggctgGGggcggga > 1:14416748‑M2/27‑32 (MQ=255) tGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCaa > 1:6576599/1‑35 (MQ=255) tGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCaa < 1:18118160/35‑1 (MQ=255) tGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCaa > 1:10975629/1‑35 (MQ=255) tGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCaa < 1:3988179/35‑1 (MQ=255) ttagggcacggtaaagtttggctgGGGGCGTCaaa > 1:5977588‑M2/25‑35 (MQ=255) ggATTGATGTTCTCTGTCAGTTTGGGGGCGTCaaa < 1:13880775/35‑1 (MQ=255) ggATTGATGTTCTCTGTCAGTTTGGGGGCGTCaaa > 1:18395457/1‑35 (MQ=255) tagggcacggtaaagtttggctgGGGGCGTCaaaa > 1:5242168‑M2/24‑35 (MQ=255) gATTGATGTTCTCTGTCAGTTTGGGGGCGTCaaaa > 1:19005661/1‑35 (MQ=255) gATTGATGTTCTCTGTCAGTTTGGGGGCGTCaaaa > 1:10849962/1‑35 (MQ=255) gATTGATGTTCTCTGTCAGTTTGGGGGCGTCaaaa > 1:11559417/1‑35 (MQ=255) gATTGATGTTCTCTGTCAGTTTGGGGGCGTCaaaa < 1:15999305/35‑1 (MQ=255) aTTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAag < 1:145783/35‑1 (MQ=255) aTTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAag > 1:3420030/1‑35 (MQ=255) aTTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAag > 1:4360215/1‑35 (MQ=255) aTTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAag > 1:3579295/1‑35 (MQ=255) ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga > 1:11073591/1‑35 (MQ=255) ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga < 1:6197080/35‑1 (MQ=255) ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga < 1:1190528/35‑1 (MQ=255) ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga < 1:12421220/35‑1 (MQ=255) ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga > 1:18167020/1‑35 (MQ=255) ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga < 1:18141081/35‑1 (MQ=255) ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga > 1:13753278/1‑35 (MQ=255) ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga < 1:13760915/35‑1 (MQ=255) ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga < 1:7673625/35‑1 (MQ=255) tGATGTTCTCTGTCAGTTTGGGGGCGTCAAAagag < 1:13336835/35‑1 (MQ=255) tGATGTTCTCTGTCAGTTTGGGGGCGTCAAAagag < 1:15399003/35‑1 (MQ=255) tGATGTTCTCTGTCAGTTTGGGGGCGTCAAAagag > 1:5504623/1‑35 (MQ=255) tGATGTTCTCTGTCAGTTTGGGGGCGTCAAAagag > 1:2863510/1‑35 (MQ=255) gATGTTCTCTGTCAGTTTGGGGGCGTCAAAagatc > 1:9222126/1‑33 (MQ=255) gATGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGc > 1:10232722/1‑35 (MQ=255) aTGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCt > 1:3235300/1‑35 (MQ=255) tGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCtt < 1:4053386/35‑1 (MQ=255) tGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCtt < 1:19450512/35‑1 (MQ=255) gTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCttt < 1:8557274/35‑1 (MQ=255) ttCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTg < 1:12811984/35‑1 (MQ=255) ttCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTg < 1:3717262/35‑1 (MQ=255) ttCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTg < 1:12912262/35‑1 (MQ=255) tctcTGTCAGTTTGGGGGCGTCAAAAGAGCTTTgg > 1:1136389/1‑35 (MQ=255) tctcTGTCAGTTTGGGGGCGTCAAAAGAGCTTTgg < 1:7070210/35‑1 (MQ=255) tctcTGTCAGTTTGGGGGCGTCAAAAGAGCTTTgg < 1:17343761/35‑1 (MQ=255) ctctGTCAGTTTGGGGGCGTCAAAAGAGCTTTggg < 1:1910302/35‑1 (MQ=255) tctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGa < 1:8427015/35‑1 (MQ=255) tctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGa < 1:9527282/35‑1 (MQ=255) tctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGa < 1:3391213/35‑1 (MQ=255) ctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGAt > 1:1999307/1‑35 (MQ=255) ctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGAt < 1:7914475/35‑1 (MQ=255) ctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGAt > 1:13808499/1‑35 (MQ=255) ctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGAt < 1:7032900/35‑1 (MQ=255) tGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATa < 1:9268875/35‑1 (MQ=255) tGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATa < 1:10697428/35‑1 (MQ=255) tGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATa > 1:10982946/1‑35 (MQ=255) gTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAg > 1:4753060/1‑35 (MQ=255) gTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAg < 1:2904592/35‑1 (MQ=255) tCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgc > 1:10005486/1‑35 (MQ=255) tCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgc > 1:1117690/1‑35 (MQ=255) tCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgc < 1:17814018/35‑1 (MQ=255) tCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgc < 1:5433403/35‑1 (MQ=255) tCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgc < 1:4923668/35‑1 (MQ=255) cAGTTTGGGGGCGTCAAAAGAGCTTTGTGATAgcc < 1:1482341/35‑1 (MQ=255) cAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgcc < 1:2048522/35‑1 (MQ=255) aGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgccg > 1:9137763/1‑35 (MQ=255) gTTTGGGGGCGTCGAAAGAGCTTTGGGATAgccgc > 1:9324205/1‑35 (MQ=255) tttGGGGGCGTCAAAAGAGCTTTGGGATAgccgcc > 1:2361998/1‑35 (MQ=255) ttGGGGGCGTCAAAAGAGCTTTGGGATAGCCGccc < 1:17852803/35‑1 (MQ=255) ttGGGGGCGTCAAAAGAGCTTTGGGATAGCCGccc > 1:14794696/1‑35 (MQ=255) ttGGGGGCGTCAAAAGAGCTTTGGGATAGCCGccc > 1:6671481/1‑35 (MQ=255) ttGGGGGCGTCAAAAGAGCTTTGGGATAGCCGccc < 1:18064083/35‑1 (MQ=255) ttGGGGGCGTCAAAAGAGCTTTGGGATAGCCGccc > 1:130092/1‑35 (MQ=255) tgGGGGCGTCAAAAGAGCTTTGGGATAGCCGcccc > 1:10501013‑M2/3‑35 (MQ=255) gGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCg > 1:6395116‑M2/2‑35 (MQ=255) | TGCCATGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCGA > REL606/2645788‑2645856 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |