New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 354520181 (0.790)9 (0.120) 3/36 NT 13.7% coding (847/1575 nt) nikA nickel transporter subunit
?REL606 = 4576439 53 (0.690)coding (2/381 nt) hpaF 5‑carboxymethyl‑2‑hydroxymuconate delta‑isomerase

Only 100 of 165 total aligned reads displayed.

GATGCTGGCGCTCAATACCGCCAAAGCCCCCACCAACGAGCTGGCAGTACGTGAAGCTCTTAATTACGC  >  REL606/3545167‑3545235
                                  |                                  
gATGCTTGCGCTCAATACCGCCAAAGCCCCCACCA                                    >  1:4937923‑M1/1‑35 (MQ=255)
gATGCTGGCGCTCAATACCGCCAAAGCCCCCACCA                                    >  1:1135735‑M1/1‑35 (MQ=255)
 aTGCTGGCGCTCAATACCGCCAAAGCCCCCACCaa                                   >  1:10031344/1‑35 (MQ=255)
 aTGCTGGCGCTCAATACCGCCAAAGCCCCCACCaa                                   >  1:887885/1‑35 (MQ=255)
 aTGCTGGCGCTCAATACCGCCAAAGCCCCCACCaa                                   >  1:787612/1‑35 (MQ=255)
 aTGCTGGCGCTCAATACCGCCAAAGCCCCCACCaa                                   >  1:413676/1‑35 (MQ=255)
   gCTGGCGCTCAATACCGCCAAAGCCCCCACCAACg                                 >  1:7057686/1‑35 (MQ=255)
    cTGGCGCTCAATACCGCCAAAGCCCCCACTAACGa                                >  1:11779986/1‑35 (MQ=255)
     tGGCGCTCAATACCGCCAAAGCCCCCACCAACGAg                               >  1:14779315/1‑35 (MQ=255)
      ggCGCTCAATACCGCCAAAGCCCCCACCAACGAGc                              >  1:8661685/1‑35 (MQ=255)
       gcgcTCAATACCGCCAAAGCCCCCACCAACGAGCt                             >  1:9794612/1‑35 (MQ=255)
       gcgcTCAATACCGCCAAAGCCCCCACCAACGAGCt                             >  1:683295/1‑35 (MQ=255)
       gcgcTCAATACCGCCAAAGCCCCCACCAACGAGCt                             >  1:20349637/1‑35 (MQ=255)
        cgcTCAATACCGCCAAAGCCCCCACCAACGAGCTg                            >  1:19714587/1‑35 (MQ=255)
         gcTCAATACCGCCAAAGCCCCCACCAACGAGCTgg                           >  1:9024244/1‑35 (MQ=255)
         gcTCAATACCGCCAAAGCCCCCACCAACGAGCTgg                           >  1:18872027/1‑35 (MQ=255)
           tCAATACCGCCAAAGCCCCCACCAACGAGCTGGCa                         >  1:16328908/1‑35 (MQ=255)
            cAATACCGCCAAAGCCCCCACCAACGAGCTGGCAg                        >  1:11286148/1‑35 (MQ=255)
            cAATACCGCCAAAGCCCCCACCAACGAGCTGGCAg                        >  1:10837027/1‑35 (MQ=255)
             aaTACCGCCAAAGCCCCCACCAACGAGCTGGCAGt                       >  1:9308348/1‑35 (MQ=255)
             aaTACCGCCAAAGCCCCCACCAACGAGCTGGCAGt                       >  1:5745214/1‑35 (MQ=255)
             aaTACCGCCAAAGCCCCCACCAACGAGCTGGCAGt                       >  1:14034012/1‑35 (MQ=255)
              cccccGCCAAAGCCCCCACCAACGAGCTGGCAGTa                      <  1:2227825/32‑1 (MQ=255)
              cccccGCCAAAGCCCCCACCAACGAGCTGGCAGTa                      <  1:16325869/32‑1 (MQ=255)
              cccccGCCAAAGCCCCCACCAACGAGCTGGCAGTa                      <  1:5185347/32‑1 (MQ=255)
               tACCGCCAAAGCCCCCACCAACGAGCTGGCAGGAc                     >  1:18354773/1‑35 (MQ=255)
                cccgCGAAAGCCCCCACCAtgccgcactttatcgt                    <  1:3593437‑M1/34‑17 (MQ=255)
                cccGCCAAAGCCCCCGCCAACGAGCTGGCAGTACg                    <  1:16351764/34‑1 (MQ=255)
                aCCGCCAAAGCCCCCACCAACGAGCTGGCAGTACg                    >  1:15730247/1‑35 (MQ=255)
                 ccGCCAAATCCCCCACCAACTAGCTGGCAGTACGt                   >  1:8202675/1‑35 (MQ=38)
                 ccGCCAAAGCCCCCACCAACGAGCTGGCAGTACGt                   <  1:9691068/35‑1 (MQ=255)
                 ccGCCAAAGCCCCCACCAACGAGCTGGCAGTACGt                   >  1:14877776/1‑35 (MQ=255)
                 ccGCCAAAGCCCCCACCAACGAGCTGGAAGTACGt                   <  1:15431585/35‑1 (MQ=255)
                 ccGCAAAAGCCCCCACCAtgccgcactttatcgtg                   <  1:3656272‑M1/35‑18 (MQ=255)
                  cGCCAAAGCCCCCACCAACGAGCTGGCAGTACggt                  >  1:17075996/1‑33 (MQ=255)
                  cGCCAAAGCCCCCACCAACGAGCTGGCAGTACGTg                  <  1:2452008/35‑1 (MQ=255)
                  cGCCAAAGCCCCCACCAACGAGCTGGCAGTACGTg                  >  1:13316458/1‑35 (MQ=255)
                  cGCCAAAGCCCCCACCAACGAGCTGGCAGTACGTg                  >  1:16837136/1‑35 (MQ=255)
                  cGCCAAAGCCCCCACCAACGAGCTGGCAGGACGTg                  >  1:8678556/1‑35 (MQ=255)
                   tctaaagccCCCACCAtgccgcactttatcgtgga                 <  1:3043947‑M1/32‑20 (MQ=255)
                   gCCAAAGCCCCCACCAACGAGCTGGCAGGACGTGa                 >  1:18117646/1‑35 (MQ=255)
                    ccAAAGCCCCCACCAACGAGCTGGCAGTACGTGaa                >  1:752899/1‑35 (MQ=255)
                    ccAAAGCCCCCACCAACGAGCTGGCAGTACGTGaa                >  1:3622997/1‑35 (MQ=255)
                    ccAAAGCCCCCACCAACGAGCTGGCAGTACGTGaa                >  1:11411537/1‑35 (MQ=255)
                     gaaagCCCCCACCAtgccgcactttatcgtggaat               <  1:9051795‑M1/34‑22 (MQ=255)
                     gaaacCCCCCACCAtgccgcactttatcgtggaat               <  1:3895577‑M1/34‑22 (MQ=255)
                     cAAAGCCCCCACCAACGAGCTGGCAGTACGTGAAg               <  1:5610477/35‑1 (MQ=255)
                     cAAAGCCCCCACCAACGAGCTGGCAGTACGTGAAg               <  1:9463147/35‑1 (MQ=255)
                     cAAAGCCCCCACCAACGAGCTGGCAGTACGTGAAg               >  1:2789085/1‑35 (MQ=255)
                      aaaGCCCCCACCAtgccgcactttatcgtggaatg              <  1:3328647‑M1/35‑23 (MQ=255)
                      aaaGCCCCCACCAACGAGCTGGCAGTACGTGAAGc              >  1:18132947/1‑35 (MQ=255)
                       aaGCCCCCACCAACGAGCTGGCAGTACGTGAAGct             <  1:815514/35‑1 (MQ=255)
                       aaGCCCCCACCAACGAGCTGGCAGTACGTGAAGct             >  1:16078443/1‑35 (MQ=255)
                        aGCCCCCACCAtgccgcactttatcgtggaatgta            <  1:10449628‑M1/35‑25 (MQ=255)
                        aGCCCCCACCAtgccgcactttatcgtggaatgta            <  1:4285340‑M1/35‑25 (MQ=255)
                        aGCCCCCACCAACGAGCTGGCAGTACGTGAAGctc            <  1:10241158/35‑1 (MQ=255)
                        aGCCCCCACCAACGAGCTGGCAGTACGTGAAGctc            <  1:4040728/35‑1 (MQ=255)
                         gCCCCCACCAtgccgcactttatcgtggaatgtac           <  1:14907072‑M1/35‑26 (MQ=255)
                         gCCCCCACCAACGAGCTGGCAGTACGTGAAGctct           <  1:10594014/35‑1 (MQ=255)
                         gCCCCCACCAACGAGCTGGCAGTACGTGAAGctct           <  1:2590750/35‑1 (MQ=255)
                         gCCCCCACCAACGAGCTGGCAGTACGTGAAGctct           <  1:11635129/35‑1 (MQ=255)
                         gCCCCCACCAACGAGCTGGCAGTACGTGAAGctct           <  1:12873420/35‑1 (MQ=255)
                          cccccACCAtgccgcactttatcgtggaatgtact          <  1:11029827‑M1/35‑27 (MQ=255)
                          cccccACCAACGAGCTGGCAGTACGTGAAGCTCtt          <  1:11870146/35‑1 (MQ=255)
                          cccccACCAACGAGCTGGCAGTACGTGAAGCTCtt          <  1:3171183/35‑1 (MQ=255)
                          cccccAACAACGAGCTGGCAGTACGTGAAGCTCtt          <  1:17555099/35‑1 (MQ=255)
                           ccccACCAACGAGCTGGCAGTACGTGAAGCTCTTa         <  1:8494850/35‑1 (MQ=255)
                           ccccACCAACGAGCTGGCAGTACGTGAAGCTCTTa         <  1:19035670/35‑1 (MQ=255)
                            cccACCAtgccgcactttatcgtggaatgtactga        <  1:14883858‑M1/35‑29 (MQ=255)
                            cccACCAACGAGCTGGCAGTACGTGAAGCTCTTaa        <  1:17911260/35‑1 (MQ=255)
                            cccACCAACGAGCTGGCAGTACGTGAAGCTCTTaa        <  1:5960179/35‑1 (MQ=255)
                             ccaccatgccgcactttatcgtggaatgtactgaa       >  1:4676236‑M1/1‑6 (MQ=255)
                             ccaccatgccgcactttatcgtggaatgtactgaa       >  1:12818447‑M1/1‑6 (MQ=255)
                             ccaccatgccgcactttatcgtggaatgtactgaa       <  1:13715684‑M1/35‑30 (MQ=255)
                              caccatgccgcactttatcgtggaatgtactgaaa      >  1:3438335‑M1/1‑5 (MQ=255)
                              caccatgccgcactttatcgtggaatgtactgaaa      >  1:10130808‑M1/1‑5 (MQ=255)
                              caccaACGAGCTGGCAGTACGTGAAGCTCTTAAtt      <  1:17423920/35‑1 (MQ=255)
                               accatgccgcactttatcgtggaatgtactgaaaa     >  1:1365787‑M1/1‑4 (MQ=255)
                               accatgccgcactttatcgtggaatgtactgaaaa     >  1:2069380‑M1/1‑4 (MQ=255)
                               accatgccgcactttatcgtggaatgtactgaaaa     >  1:19889601‑M1/1‑4 (MQ=255)
                               accatgccgcactttatcgtggaatgtactgaaaa     <  1:18737406‑M1/35‑32 (MQ=255)
                               accatgccgcactttatcgtggaatgtactgaaaa     >  1:15583880‑M1/1‑4 (MQ=255)
                               accaACGAGCTGGCAGTACGTGAAGCTCTTAATTa     >  1:11972177/1‑35 (MQ=255)
                               accaACGAGCTGGCAGTACGTGAAGCTCTTAATTa     >  1:12450063/1‑35 (MQ=255)
                               accaACGAGCTGGCAGTACGTGAAGCTCTTAATTa     <  1:7408693/35‑1 (MQ=255)
                               accaACGAGCTGGCAGTACGTGAAGCTCTTAATTa     <  1:15928206/35‑1 (MQ=255)
                                ccatgccgcactttatcgtggaatgtactgaaaat    >  1:1336618‑M1/1‑3 (MQ=255)
                                ccatgccgcactttatcgtggaatgtactgaaaat    >  1:10694644‑M1/1‑3 (MQ=255)
                                ccaACGAGCTGGCAGTACGTGAAGCTCTTAATTAc    <  1:13097859/35‑1 (MQ=255)
                                ccaACGAGCTGGCAGTACGTGAAGCTCTTAATTAc    <  1:12740156/35‑1 (MQ=255)
                                 catgccgcactttatcgtggcatgtactgaaaata   >  1:14283988‑M1/1‑2 (MQ=255)
                                 caACGAGCTGGCAGTACGTGAAGCTCTTAATTAcg   <  1:299621/35‑1 (MQ=255)
                                 caACGAGCTGGCAGTACGTGAAGCTCTTAATTAcg   <  1:1938835/35‑1 (MQ=255)
                                 caACGAGCTGGCAGTACGTGAAGCTCTTAATTAcg   <  1:19531636/35‑1 (MQ=255)
                                 caACGAGCTGGCAGTACGTGAAGCTCTTAATTAcg   <  1:14310879/35‑1 (MQ=255)
                                  atgccgcactttatcgtggaatgtactgaaaatat  <  1:15967651‑M1/35‑35 (MQ=255)
                                  atgccgcactttatcgtggaatgtactgaaaatat  <  1:11443485‑M1/35‑35 (MQ=255)
                                  aaCGAGCTGGCAGTACGTGAAGCTCTTAATTAcgc  <  1:10308487/35‑1 (MQ=255)
                                  aaCGAGCTGGCAGTACGTGAAGCTCTTAATTAcgc  <  1:12514841/35‑1 (MQ=255)
                                  aaCGAGCTGGCAGTACGTGAAGCTCTTAATTAcgc  <  1:2029799/35‑1 (MQ=255)
                                  |                                  
GATGCTGGCGCTCAATACCGCCAAAGCCCCCACCAACGAGCTGGCAGTACGTGAAGCTCTTAATTACGC  >  REL606/3545167‑3545235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.