New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1544434 =52 (0.510)6 (0.060) 4/46 NT 10.0% coding (7/1536 nt) xasA predicted glutamate:gamma‑aminobutyric acid antiporter
?REL606 = 2047872 58 (0.590)coding (1256/1395 nt) wcaM predicted colanic acid biosynthesis protein

Only 100 of 102 total aligned reads displayed.

ATGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAACACGCCGCGAACGTCTTTGCGCAT  >  REL606/2047838‑2047906
                                  |                                  
aTGAACATTTGCAAGAGACAGCAGTGTTTCttttt                                    >  1:15710750/1‑35 (MQ=255)
aTGAACATTTGCAAGAGACAGCAGTGTTTCttttt                                    >  1:16199413/1‑35 (MQ=255)
aTGAACATTTGCAAGAGACAGCAGTGTTTCttttt                                    >  1:8071401/1‑35 (MQ=255)
aTGAACATTTGCAAGAGACAGCAGTGTTTCttttt                                    <  1:12698839/35‑1 (MQ=255)
 tGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTt                                   <  1:13271622‑M2/35‑2 (MQ=255)
 tGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTt                                   >  1:13090731‑M2/1‑34 (MQ=255)
 tGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTt                                   <  1:19404331‑M2/35‑2 (MQ=255)
 tGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTt                                   >  1:3672904‑M2/1‑34 (MQ=255)
 tGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTt                                   >  1:10124884‑M2/1‑34 (MQ=255)
  gAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTc                                  <  1:13685567/35‑1 (MQ=255)
   aaCATTTGCAAGAGACAGCAGTGTTTCTTTTTTCg                                 >  1:1150985/1‑35 (MQ=255)
   aaCATTTGCAAGAGACAGCAGTGTTTCTTTTTTCg                                 >  1:1470599/1‑35 (MQ=255)
   aaCATTTGCAAGAGACAGCAGTGTTTCTTTTTTCg                                 <  1:10898787/35‑1 (MQ=255)
   aaCATTTGCAAGAGACAGCAGTGTTTCTTTTTTCg                                 <  1:1459587/35‑1 (MQ=255)
    aCATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGc                                <  1:1149670/35‑1 (MQ=255)
    aCATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGc                                >  1:7472255/1‑35 (MQ=255)
     cATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGcc                               >  1:12380101/1‑35 (MQ=255)
      aTTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCa                              <  1:4991665/35‑1 (MQ=255)
      aTTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCa                              <  1:15036370/35‑1 (MQ=255)
      aTTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCa                              >  1:14950866/1‑35 (MQ=255)
       tttGCAAGAGACAGCAGTGTTTCTTTTTTCGCCAt                             <  1:14490319/35‑1 (MQ=255)
       tttGCAAGAGACAGCAGTGTTTCTTTTTTCGCCAt                             <  1:363302/35‑1 (MQ=255)
       tttGCAAGAGACAGCAGTGTTTCTTTTTTCGCCAt                             >  1:888571/1‑35 (MQ=255)
       tttGCAAGAGACAGCAGTGTTTCTTTTTTCGCCAt                             >  1:9830782/1‑35 (MQ=255)
       tttGCAAGAGACAGCAGTGTTTCTTTTTTCGCCAt                             <  1:12226389/35‑1 (MQ=255)
        ttGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATa                            <  1:18979790/35‑1 (MQ=255)
        ttGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATa                            >  1:16561912/1‑35 (MQ=255)
        ttGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATa                            <  1:6406406/35‑1 (MQ=255)
        ttGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATa                            >  1:6318450/1‑35 (MQ=255)
        ttGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATa                            <  1:15338291/35‑1 (MQ=255)
        ttGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATa                            <  1:5721023/35‑1 (MQ=255)
         tGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATaa                           <  1:15641899/35‑1 (MQ=255)
         tGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATaa                           >  1:3484819/1‑35 (MQ=255)
          gCAAGAGACAGCAGTGTTTCTTTTTTCGCCATaaa                          <  1:5894543/35‑1 (MQ=255)
          gCAAGAGACAGCAGTGTTTCTTTTTTCGCCATaaa                          <  1:9667630/35‑1 (MQ=255)
          gCAAGAGACAGCAGTGTTTCTTTTTTCGCCATaaa                          <  1:962968/35‑1 (MQ=255)
          gCAAGAGACAGCAGTGTTTCTTTTTTCGCCATaaa                          >  1:9426729/1‑35 (MQ=255)
          gCAAGAGACAGCAGTGTTTCTTTTTTCGCCATaaa                          >  1:5778871/1‑35 (MQ=255)
          gCAAGAGACAGCAGTGTTTCTTTTTTCGCCATaaa                          <  1:835934/35‑1 (MQ=255)
          gCAAGAGACAGCAGTGTTTCTTTTTTCGCCATaaa                          >  1:13978688/1‑35 (MQ=255)
          gCAAGAGACAGCAGTGTTTCTTTTTTCGCCATaaa                          >  1:14240136/1‑35 (MQ=255)
           cAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAac                         >  1:14854708/1‑35 (MQ=255)
            aaGAGACAGCAGTGTTTCTTTTTTCGCCATAAaca                        <  1:19549848/35‑1 (MQ=255)
            aaGAGACAGCAGTGTTTCTTTTTTCGCCATAAaca                        >  1:11216553/1‑35 (MQ=255)
             agagACAGCAGTGTTTCTTTTTTCGCCATAAacac                       <  1:5544168/35‑1 (MQ=255)
             agagACAGCAGTGTTTCTTTTTTCGCCATAAacac                       >  1:8126850/1‑35 (MQ=255)
              gagaCAGCAGTGTTTCTTTTTTCGCCATAAACAcg                      >  1:13107353/1‑35 (MQ=255)
              gagaCAGCAGTGTTTCTTTTTTCGCCATAAACAcg                      <  1:12733949/35‑1 (MQ=255)
              gagaCAGCAGTGTTTCTTTTTTCGCCATAAACAcg                      >  1:14166390/1‑35 (MQ=255)
               agaCAGCAGTGTTTCTTTTTTCGCCATAAACAcgc                     <  1:5389467/35‑1 (MQ=255)
               agaCAGCAGTGTTTCTTTTTTCGCCATAAACAcgc                     <  1:17297640/35‑1 (MQ=255)
               agaCAGCAGTGTTTCTTTTTTCGCCATAAACAcgc                     >  1:4868556/1‑35 (MQ=255)
                gaCAGCAGTGTTTCTTTTTTCGCCATAAACAcgcc                    <  1:5244312/35‑1 (MQ=255)
                gaCAGCAGTGTTTCTTTTTTCGCCATAAACAcgcc                    <  1:17984013/35‑1 (MQ=255)
                gaCAGCAGTGTTTCTTTTTTCGCCATAAACAcgcc                    >  1:13168683/1‑35 (MQ=255)
                 aCAGCAGTGTTTCTTTTTTCGCCATAAACAcgccg                   <  1:17742184/35‑1 (MQ=255)
                 aCAGCAGTGTTTCTTTTTTCGCCATAAACAcgccg                   >  1:287095/1‑35 (MQ=255)
                 aCAGCAGTGTTTCTTTTTTCGCCATAAACAcgccg                   >  1:19648055/1‑35 (MQ=255)
                 aCAGCAGTGTTTCTTTTTTCGCCATAAACAcgccg                   <  1:6370134/35‑1 (MQ=255)
                  cagcagTGTTTCTTTTTTCGCCATAAACAcgccgc                  >  1:4587772/1‑35 (MQ=255)
                   agcagTGTTTCTTTTTTCGCCATAAACACGCcgcg                 <  1:18858683/35‑1 (MQ=255)
                   agcagTGTTTCTTTTTTCGCCATAAACACGCcgcg                 >  1:7998126/1‑35 (MQ=255)
                    gcagTGTTTCTTTTTTCGCCATAAACACGCCGCGa                >  1:9673298/1‑35 (MQ=255)
                     cagTGTTTCTTTTTTCGCCATAAACACGCCGCGaa               <  1:2592344/35‑1 (MQ=255)
                     cagTGTTTCTTTTTTCGCCATAAACACGCCGCGaa               >  1:5163978/1‑35 (MQ=255)
                     cagTGTTTCTTTTTTCGCCATAAACACGCCGCGaa               <  1:16674073/35‑1 (MQ=255)
                      agTGTTTCTTTTTTCGCCATAAACACGCCGCGAAc              >  1:16099036/1‑35 (MQ=255)
                        tgtTTCTTTTTTCGCCATAAACACGCCGCGAACGt            >  1:7106728/1‑35 (MQ=255)
                        tgtTTCTTTTTTCGCCATAAACACGCCGCGAACGt            >  1:9827623/1‑35 (MQ=255)
                        tgtTTCTTTTTTCGCCATAAACACGCCGCGAACGt            >  1:10219860/1‑35 (MQ=255)
                        tgtTTCTTTTTTCGCCATAAACACGCCGCGAACGt            <  1:17538752/35‑1 (MQ=255)
                         gtTTCTTTTTTCGCCATAAACACGCCGCGAACGTc           >  1:5113330/1‑35 (MQ=255)
                         gtTTCTTTTTTCGCCATAAACACGCCGCGAACGTc           >  1:13326702/1‑35 (MQ=255)
                          tttCTTTTTtagccatattatcccccaaaaacggt          >  1:4786350‑M2/1‑9 (MQ=255)
                          gttcTTTTTtagccatattatccccctaaaacggt          >  1:15838269‑M2/2‑9 (MQ=255)
                          gttcTGTTTtagccatattatccccctaaaacggt          >  1:15152720‑M2/2‑9 (MQ=255)
                           ttCTTTTTtagccatattatccccctaaaacggta         >  1:3621773‑M2/1‑8 (MQ=255)
                           ttCTTTTTTCGCCATAAACACGCCGCGAACGTCtt         <  1:16960355/35‑1 (MQ=255)
                           ttCTTTTTTCGCCATAAACACGCCGCGAACGTCtt         <  1:11233832/35‑1 (MQ=255)
                           ttCTTTTTTCGCCATAAACACGCCGCGAACGTCtt         <  1:209400/35‑1 (MQ=255)
                            tCTTTTTTCGCCATAAACACGCCGCGAACGTCttt        <  1:2104673/35‑1 (MQ=255)
                            tCTGTTTtagccatattatccccctaaaacggtat        >  1:2886619‑M2/1‑7 (MQ=255)
                             cTTTTTtagccatattatccccctaaaacggtatt       >  1:20066751‑M2/1‑6 (MQ=255)
                              ttttttCGCCATAAACACGCCGCGAACGTCTTTgc      <  1:20519458/35‑1 (MQ=255)
                              ttttttCGCCATAAACACGCCGCGAACGTCTTTgc      >  1:3352286/1‑35 (MQ=255)
                              ttttttAGCCATAAACACGCCGCGAACGTCTTTgc      <  1:4003459/35‑1 (MQ=255)
                              tgttttagccatattatccccctaaaacggtattc      >  1:19918918‑M2/3‑5 (MQ=255)
                              tgttttagccatattatccccctaaaacggtattc      >  1:13186541‑M2/3‑5 (MQ=255)
                              tgttttagccatattatccccctaaaacggtattc      >  1:16183324‑M2/3‑5 (MQ=255)
                               tttttagccatattatccccctaaaacggtattcc     >  1:2178936‑M2/1‑4 (MQ=255)
                               tttttCGCCATAAACACGCCGCGAACGTCTTTgcg     >  1:12433867/1‑35 (MQ=255)
                               gttttagccatattatccccctaaaacggtattcc     >  1:18057194‑M2/2‑4 (MQ=255)
                                ttttagccatattatccccctaaaacggtattcct    >  1:14180048‑M2/1‑3 (MQ=255)
                                ttttCGCCATAAACACGCCGCGAACGTCTTTgcgc    <  1:619337/35‑1 (MQ=255)
                                 tttagccatattatccccctaaaacggtattcctg   >  1:7324920‑M2/1‑2 (MQ=255)
                                 tttCGCCATAAACACGCCGCGAACGTCTTTGCGCa   >  1:10613233/1‑35 (MQ=255)
                                 tttCGCCATAAACACGCCGCGAACGTCTTTGCGCa   <  1:12758367/35‑1 (MQ=255)
                                 tttCGCCATAAACACGCCGCGAACGTCTTTGCGCa   <  1:2774035/35‑1 (MQ=255)
                                  ttCGCCATAAACACGCCGCGAACGTCTTTGCGCAt  <  1:15296491/35‑1 (MQ=255)
                                  ttCGCCATAAACACGCCGCGAACGTCTTTGCGCAt  <  1:13786000/35‑1 (MQ=255)
                                  |                                  
ATGAACATTTGCAAGAGACAGCAGTGTTTCTTTTTTCGCCATAAACACGCCGCGAACGTCTTTGCGCAT  >  REL606/2047838‑2047906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.