Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,475,057 | C→T | 36.6% | intergenic (+193/‑168) | yhgI → / → gntT | predicted gluconate transport associated protein/gluconate transporter, high‑affinity GNT I system |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,475,057 | 0 | C→T | 36.6% | 148.2 ‑2.7 ‑0.0 | 153 | intergenic (+193/‑168) | yhgI/gntT | predicted gluconate transport associated protein/gluconate transporter, high‑affinity GNT I system |
Reads supporting (aligned to +/- strand): new base (34/22): ref base (43/53): total (77/76) | ||||||||||
Fisher's exact test strand distribution p-value = 6.59e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.70e-01 |
Only 100 of 175 total aligned reads displayed.
CCGCTCTGGTGATTCTCAAACGCCAGATGTTACCCGTATCATTCACATGGGTACCAAACATACTCCTGA > REL606/3475023‑3475091 | ccGCTCTGGTGATTCTCAAACGCCAGATGTTAccc > 1:16832257/1‑35 (MQ=255) cGCTCTGGTGATTCTCAAACGCCAGATGTTACCCg > 1:16011833/1‑35 (MQ=255) cGCTCTGGTGATTCTCAAACGCCAGATGTTACCCg < 1:5822986/35‑1 (MQ=255) gCTCTGGTGATTCTCAAACGCCAGATGTTACCCGt < 1:18270653/35‑1 (MQ=255) gCTCTGGTGATTCTCAAACGCCAGATGTTACCCGt > 1:19407910/1‑35 (MQ=255) ctctGGTGATTCTCAAACGCCAGATGTTACCCGTa < 1:7005958/35‑1 (MQ=255) ctctGGTGATTCTCAAACGCCAGATGTTACCCGTa > 1:2294094/1‑35 (MQ=255) tctGGTGATTCTCAAACGCCAGATGTTACCTGTAt < 1:18083177/35‑1 (MQ=255) tctGGTGATTCTCAAACGCCAGATGTTACCCGTAt > 1:20035849/1‑35 (MQ=255) tctGGTGATTCTCAAACGCCAGATGTTACCCGTAt < 1:20591128/35‑1 (MQ=255) ctGGTGATTCTCAAACGCCAGATGTTACCTGTATc > 1:1985355/1‑35 (MQ=255) ctGGTGATTCTCAAACGCCAGATGTTACCCGTATc < 1:8975596/35‑1 (MQ=255) ctGGTGATTCTCAAACGCCAGATGTTACCCGTATc > 1:11078257/1‑35 (MQ=255) tGGTGATTCTCAAACGCCAGATGTTACCTGTATCa > 1:98512/1‑35 (MQ=255) tGGTGATTCTCAAACGCCAGATGTTACCTGTATCa < 1:6063512/35‑1 (MQ=255) tGGTGATTCTCAAACGCCAGATGTTACCCGTATCa > 1:15353699/1‑35 (MQ=255) tGGTGATTCTCAAACGCCAGATGTTACCCGTATCa > 1:4766923/1‑35 (MQ=255) ggTGATTCTCAAACGCCAGATGTTACCTGTATCAt < 1:14634401/35‑1 (MQ=255) gTGATTCTCAAACGCCAGATGTTACCTGTATCAtt > 1:11392264/1‑35 (MQ=255) gTGATTCTCAAACGCCAGATGTTACCCGTATCAtt < 1:13246095/35‑1 (MQ=255) tGATTCTCAAACGCCAGATGTTACCCGTATCATTc < 1:7540006/35‑1 (MQ=255) gATTCTCAAACGCCAGATGTTACCTGTATCATTca > 1:15955526/1‑35 (MQ=255) gATTCTCAAACGCCAGATGTTACCCGTATCATTca > 1:142937/1‑35 (MQ=255) aTTCTCAAACGCCAGATGTTACCCGTATCATTcac > 1:2496232/1‑35 (MQ=255) aTTCTCAAACGCCAGATGTTACCCGTATCATTcac < 1:10532416/35‑1 (MQ=255) ttCTCAAACGCCAGATGTTACCTGTATCATTcaca < 1:9263590/35‑1 (MQ=255) tctcAAACGCCAGATGTTACCCGTATCATTCACAt < 1:3270192/35‑1 (MQ=255) tctcAAACGCCAGATGTTACCCGTATCATTCACAt > 1:3805507/1‑35 (MQ=255) tctcAAACGCCAGATGTTACCCGTATCATTCACAt < 1:15106677/35‑1 (MQ=255) ctcAAACGCCAGATGTTACCCGTATCATTCACATg < 1:3996888/35‑1 (MQ=255) tcAAACGCCAGATGTTACCCGTATCATTCACATgg > 1:16612227/1‑35 (MQ=255) tcAAACGCCAGATGTTACCCGTATCATTCACATgg < 1:8057534/35‑1 (MQ=255) cAAACGCCAGATGTTACCTGTATCATTCACATggg < 1:9587272/35‑1 (MQ=255) cAAACGCCAGATGTTACCCGTATCATTCACATggg < 1:1007171/35‑1 (MQ=255) aaaCGCCAGATGTTACCTGTATCATTCACATGGGt > 1:13023830/1‑35 (MQ=255) aaaCGCCAGATGTTACCCGTGTCATTAACATGGGt < 1:18099969/35‑1 (MQ=37) aaaCGCCAGATGTTACCCGTATCATTCACATGGGt > 1:2634551/1‑35 (MQ=255) aaaCGCCAGATGTTACCCGTATCATTCACATGGGt > 1:13847187/1‑35 (MQ=255) aaCGCCAGATGTTACCCGTATCATTCACATGGGTa < 1:3842588/35‑1 (MQ=255) aCGCCAGATGTTACCTGTATCATTCACATGGGTAc > 1:12276288/1‑35 (MQ=255) cGCCAGATGTTACCTGTATCATTCACATGGGTAcc > 1:8724506/1‑35 (MQ=255) cGCCAGATGTTACCTGTATCATTCACATGGGTAcc > 1:15224633/1‑35 (MQ=255) cGCCAGATGTTACCCGTATCATTCACATGGGTAcc < 1:11218238/35‑1 (MQ=255) gCCAGATGTTACCTGTATCATTCACATGGGTACCa > 1:17347120/1‑35 (MQ=255) gCCAGATGTTACCTGTATCATTCACATGGGTACCa < 1:4451395/35‑1 (MQ=255) gCCAGATGTTACCTGTATCATTCACATGGGTACCa < 1:13183918/35‑1 (MQ=255) gCCAGATGTTACCTGTATCATTCACATGGGTACCa > 1:10453572/1‑35 (MQ=255) gCCAGATGTTACCTGTATCATTCACATGGGTACCa < 1:5398157/35‑1 (MQ=255) gCCAGATGTTACCCGTATCATTCACATGGGTACCa < 1:16907065/35‑1 (MQ=255) gCCAGATGTTACCCGTATCATTCACATGGGTACCa > 1:10128843/1‑35 (MQ=255) ccAGATGTTACCTGTATCATTCACATGGGTACCaa > 1:6844298/1‑35 (MQ=255) ccAGATGTTACCCGTATCATTCACATGGGTACCaa < 1:9310584/35‑1 (MQ=255) cAGATGTTACCTGTATCATTCACATGGGTACCaaa < 1:7377568/35‑1 (MQ=255) cAGATGTTACCTGTATCATTCACATGGGTACCaaa > 1:1619651/1‑35 (MQ=255) cAGATGTTACCTGTATCATTCACATGGGTACCaaa > 1:5334042/1‑35 (MQ=255) cAGATGTTACCTGTATCATTCACATGGGTACCaaa > 1:15400140/1‑35 (MQ=255) cAGATGTTACCCGTATCATTCACATGGGTACCaaa < 1:7776096/35‑1 (MQ=255) cAGATGTTACCCGTATCATTCACATGGGTACCaaa > 1:17565776/1‑35 (MQ=255) cAGATGTTACCCGTATCATTCACATGGGAACCaaa > 1:11025026/1‑35 (MQ=255) aGATGTTACCTGTATCATTCACATGGGTACCAAAc > 1:18073640/1‑35 (MQ=255) aGATGTTACCCGTATCATTCACATGGGTACCAAAc < 1:17670386/35‑1 (MQ=255) aGATGTTACCCGTATCATTCACATGGGTACCAAAc < 1:19676482/35‑1 (MQ=255) gATGTTACCTGTATCATTCACATGGGTACCAAACa < 1:12573614/35‑1 (MQ=255) gATGTTACCTGTATCATTCACATGGGTACCAAACa < 1:10691715/35‑1 (MQ=255) gATGTTACCTGTATCATTCACATGGGTACCAAACa > 1:8468175/1‑35 (MQ=255) gATGTTACCTCTATCATTCACATGGGTACCAAACa > 1:17261676/1‑35 (MQ=38) gATGTTACCCGTATCATTCACATGGGTACCAAACa > 1:13371980/1‑35 (MQ=255) gATGTTACCCGTATCATTCACATGGGTACCAAACa < 1:19563074/35‑1 (MQ=255) gATGTTACCCGTATCATTCACATGGGTACCAAACa < 1:580700/35‑1 (MQ=255) gATGTTACCCGTATCATTCACATGGGTACCAAACa < 1:18422773/35‑1 (MQ=255) gATGTTACCCGTATCATTCACATGGGTACCAAACa > 1:1753164/1‑35 (MQ=255) gtGTTACCTGTATCATTCACATGGGTACCAAACAt < 1:18640378/34‑1 (MQ=255) aTGTTACCTGTATCATTCACATGGGTACCAAACAt < 1:12786396/35‑1 (MQ=255) aTGTTACCCGTATCATTCACATGGGTACCAAACAt > 1:14526224/1‑35 (MQ=255) aTGTTACCCGTATCATTCACATGGGTACCAAACAt < 1:7094818/35‑1 (MQ=255) tGTTACCTGTATCATTCACATGGGTACCAAACATa < 1:14745986/35‑1 (MQ=255) tGTTACCCGTATCATTCACATGGGTACCAAACATa < 1:295073/35‑1 (MQ=255) tGTTACCCGTATCATTCACATGGGTACCAAACATa < 1:18940670/35‑1 (MQ=255) tGTTACCCGTATCATTCACATGGGTACCAAACATa < 1:13322485/35‑1 (MQ=255) gTTACCTGTATCATTCACATGGGTACCAAACATAc > 1:18417893/1‑35 (MQ=255) gTTACCTGTATCATTCACATGGGTACCAAACATAc < 1:11831925/35‑1 (MQ=255) gTTACCCGTATCATTCACATGGGTACCAAACATAc > 1:14193867/1‑35 (MQ=255) gTTACCCGTATCATTCACATGGGTACCAAACATAc > 1:18913229/1‑35 (MQ=255) gTTACCCGTATCATTCACATGGGTACCAAACATAc < 1:13599548/35‑1 (MQ=255) ttACCTGTATCATTCACATGTGTACCAAACATACt > 1:19020642/1‑35 (MQ=38) ttACCTGTATCATTCACATGGGTACCAAACATACt > 1:564144/1‑35 (MQ=255) ttACCTGTATCATTCACATGGGTACCAAACATACt > 1:1305277/1‑35 (MQ=255) ttACCTGTATCATTCACATGGGTACCAAACATACt > 1:6423404/1‑35 (MQ=255) ttACCCGTATCATTCACATGGGTACCAAACATACt < 1:941018/35‑1 (MQ=255) ttACCCGTATAATTCACATGGGTACCAAACATACt < 1:2265624/35‑1 (MQ=255) tACCCGTATCATTCACATGGGTACCAAACATACTc < 1:5501696/35‑1 (MQ=255) aCCTGTATCATTCACATGGGTACCAAACATACTcc > 1:10682739/1‑35 (MQ=255) aCCCGTATCATTCACATGGGTACCAAACATACTcc > 1:16849381/1‑35 (MQ=255) aCCCGTATCATTCACATGGGTACCAAACATACTcc < 1:12433210/35‑1 (MQ=255) cccGTATCATTCACATGGGTACCAAACATACTCCt > 1:7524579/1‑35 (MQ=255) ccGTATCATTCACATGGGTACCAAACATACTCCTg < 1:14619782/35‑1 (MQ=255) cGTATCATTCACATGGGTACCAAACATACTCCTGa < 1:18533330/35‑1 (MQ=255) cGTATCATTCACATGGGTACCAAACATACTCCTGa > 1:14209800/1‑35 (MQ=255) cGTATCATTCACATGGGTACCAAACATACTCCTGa > 1:15742796/1‑35 (MQ=255) cGTATCATTCACATGGGTACCAAACATACTCCTGa < 1:12388232/35‑1 (MQ=255) | CCGCTCTGGTGATTCTCAAACGCCAGATGTTACCCGTATCATTCACATGGGTACCAAACATACTCCTGA > REL606/3475023‑3475091 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |