New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 601491 = | 81 (0.790) | 7 (0.100) | 3/34 | NT | 10.1% | coding (530/1134 nt) | fepE | regulator of length of O‑antigen component of lipopolysaccharide chains |
? | REL606 | 2785963 = | 67 (0.920) | coding (408/1338 nt) | ygcS | predicted transporter |
Only 100 of 185 total aligned reads displayed.
CCGTCACTGTATACCTCCTGGACGCTAAGTTTTACCGCGCCAACCAGTGAAGAGGCGCAGACCGTTTTG > REL606/601457‑601525 | ttcagtaggtcacaccttgctggctgaattttccc < 1:9329769‑M1/1‑1 (MQ=255) ttcagtaggtcacaccttgctggctgaattttccc < 1:12096673‑M1/1‑1 (MQ=255) ccGTCACTGTATACCTCCTGGACGCTAAGTTTTAc < 1:14167053/35‑1 (MQ=255) ccGTCACTGTATACCTCCTGGACGCTAAGTTTTAc > 1:940159/1‑35 (MQ=255) ccGTCACTGTATACCTCCTGGACGCTAAGTTTTAc < 1:15148468/35‑1 (MQ=255) ccGTCACTGTATACCTCCTGGACGCTAAGTTTTAc < 1:19975426/35‑1 (MQ=255) tcagtaggtcacaccttgctggctgaattttcccc > 1:6408998‑M1/34‑35 (MQ=255) tcagtaggtcacaccttgctggctgaattttcccc > 1:10501449‑M1/34‑35 (MQ=255) tcagtaggtcacaccttgctggctgaattttcccc > 1:4864003‑M1/34‑35 (MQ=255) tcagtaggtcacaccttgctggctgaattttcccc > 1:17637157‑M1/34‑35 (MQ=255) tcagtaggtcacaccttgctggctgaattttcccc > 1:17005242‑M1/34‑35 (MQ=255) tcagtaggtcacaccttgctggctgaattttcccc > 1:13222914‑M1/34‑35 (MQ=255) cGTCACTGTATACCTCCTGGACGCTAAGTTTTAcc > 1:2988758/1‑35 (MQ=255) cGTCACTGTATACCTCCTGGACGCTAAGTTTTAcc > 1:12445547/1‑35 (MQ=255) cGTCACTGTATACCTCCTGGACGCTAAGTTTTAcc > 1:3744516/1‑35 (MQ=255) cGTCACTGTATACCTCCTGGACGCTAAGTTTTAcc < 1:1535945/35‑1 (MQ=255) gTCACTGTATACCTCCTGGACGCTAAGTTTTACcg > 1:8934189/1‑35 (MQ=255) gTCACTGTATACCTCCTGGACGCTAAGTTTTACcg < 1:13931514/35‑1 (MQ=255) cagtaggtcacaccttgctggctgaattttcccag < 1:7207375‑M1/3‑3 (MQ=255) cagtaggtcacaccttgctggctgaattttccCcg > 1:20251436‑M1/33‑35 (MQ=255) cagtaggtcacaccttgctggctgaattttccCcg > 1:1102675‑M1/33‑35 (MQ=255) cagtaggtcacaccttgctggctgaattttccCcg > 1:2471594‑M1/33‑35 (MQ=255) tCACTGTATACCTCCTGGACGCTAAGTTTTACcgc < 1:92025/35‑1 (MQ=255) agtaggtcacaccttgcttgctgaattttccCcgc < 1:19238877‑M1/4‑1 (MQ=255) agtaggtcacaccttgctggctgaattttccCcgc > 1:5058229‑M1/32‑35 (MQ=255) agtaggtcacaccttgctggctgaattttccCcgc < 1:12483626‑M1/4‑1 (MQ=255) agtaggtcacaccttgctggctgaattttccCcgc > 1:19578397‑M1/32‑35 (MQ=255) agtaggtcacaccttgctggctgaattttccCcgc < 1:18821020‑M1/4‑1 (MQ=255) agtaggtcacaccttgctggctgaattntccCcgc > 1:17347706‑M1/32‑35 (MQ=255) gtaggtcacaccttgctggctgaattttccCcgcg < 1:16313155‑M1/5‑1 (MQ=255) gtaggtcacaccttgctggctgaattttccCcgcg < 1:15001560‑M1/5‑1 (MQ=255) gtaggtcacaccttgctggctgaattttccCcgcg > 1:19686490‑M1/31‑35 (MQ=255) cACTGTATACCTCCTGGACGCTAAGTTTTACcgcg > 1:12694546/1‑35 (MQ=255) taggtcacaccttgctggctgaattttccCCgcgc < 1:17568662‑M1/6‑1 (MQ=255) taggtcacaccttgctggctgaattttccCCgcgc < 1:5526570‑M1/6‑1 (MQ=255) taggtcacaccttgctggctgaattttccCCgcgc > 1:10781198‑M1/30‑35 (MQ=255) aCTGTATACCTCCTGGACGCTAAGTTTTACCgcgc > 1:15540706/1‑35 (MQ=255) cTGTATACCTCCTGGACGCTAAGTTTTACCGCGcc > 1:16637203/1‑35 (MQ=255) cTGTATACCTCCTGGACGCTAAGTTTTACCGCGcc > 1:16102267/1‑35 (MQ=255) cTGTATACCTCCTGGACGCTAAGTTTTACCGCGcc > 1:13243482/1‑35 (MQ=255) aggtcacaccttgctggctgaattttccCCGCGcc < 1:2060017‑M1/7‑1 (MQ=255) aggtcacaccttgctggctgaattttccCCGCGcc > 1:1798062‑M1/29‑35 (MQ=255) aggtcacaccttgctggctgaattttccCCGCGcc > 1:11440918‑M1/29‑35 (MQ=255) tGTATACCTCCTGGACGCTAAGTTTTACCGCGCCa > 1:3318914/1‑35 (MQ=255) gTATACCTCCTGGACGCTAAGTTTTACCGCGCCaa > 1:10979052/1‑35 (MQ=255) gTATACCTCCTGGACGCTAAGTTTTACCGCGCCaa > 1:8272176/1‑35 (MQ=255) tataCCTCCTGGACGCTAAGTTTTACCGCGCCAAc > 1:6718410/1‑35 (MQ=255) ataCCTCCTGGACGCTAAGTTTTACCGCGCCAAcc > 1:16226106/1‑35 (MQ=255) taCCTCCTGGACGCTAAGTTTTACCGCGCCAACCa > 1:821484/1‑35 (MQ=255) aCCTCCTGGACGCTAAGTTTTACCGCGCCAACCAg > 1:14732960/1‑35 (MQ=255) aCCTCCTGGACGCTAAGTTTTACCGCGCCAACCAg > 1:20482027/1‑35 (MQ=255) cctcctGGACTCTAAGTTTTACCGCGCCAACCAGt > 1:400777/1‑35 (MQ=255) cctcctGGACGCTAAGTTTTCCCGAGCCAACAAGt < 1:17213246/35‑1 (MQ=25) cctcctGGACGCTAAGTTTTACCGCGCCAACCAGt > 1:7426101/1‑35 (MQ=255) ctcctGGACGCTAAGTTTTACCGCGCCAACCAGTg > 1:7828984/1‑35 (MQ=255) cctGGACGCTAAGTTTTACCGCGCCAACCAGTGaa > 1:6933032/1‑35 (MQ=255) cctGGACGCTAAGTTTTACCGCGCCAACCAGTGaa > 1:2762693/1‑35 (MQ=255) cctGAACGCTAATTTTTCCCGCGCCAACCAGTGaa < 1:6390795/35‑1 (MQ=25) ctGGACGCTAAGTTTTACCGCGCCAACCAGTGAag > 1:13307948/1‑35 (MQ=255) ctGGACACTAATTTTCCCCGCGCCAACCAGTGAag < 1:6520977/35‑1 (MQ=16) tGGACGCTAAGTTTTACCTCGCCAACCAGTGAaga > 1:15696315/1‑35 (MQ=255) tGGACGCTAAGTTTTACCGCGCCAACCAGTGAaga > 1:4520108/1‑35 (MQ=255) ggACGCTAAGTTTTACCGCGCCAACCAGTGAagag > 1:10265151/1‑35 (MQ=255) ggACGCTAAGTTTTACCGCGCCAACCAGTGAagag > 1:11206612/1‑35 (MQ=255) gACGCTAAGTTTTACCGCGCCAACCAGTGAAGAgg > 1:19680343/1‑35 (MQ=255) ccGCAAAGTTTTCCCGCGCCAACCAGTGAAGAGgc < 1:18576189/34‑1 (MQ=25) gCTAAGTTTTACCGCGCCAACCAGTGAAGAGgcgc > 1:2232886/1‑35 (MQ=255) gCTAAGTTTTACCGCGCCAACCAGTGAAGAGgcgc > 1:19394115/1‑35 (MQ=255) cTAATTTTTCCCGCGCCAACCAGTGAAGAGGCGCa < 1:5768394/35‑1 (MQ=37) cTAAGTTTTACCGCGCCAACCAGTGAAGAGGCGCa > 1:9876913/1‑35 (MQ=255) taatttttcCCGCGCCAACCAGTGAAGAGGCGCAg > 1:17296631‑M1/10‑35 (MQ=255) tAAGTTTTACCGCGCCAACCAGTGAAGAGGCGCat > 1:9645841/1‑34 (MQ=255) tAAGTTTTACCGCGCCAACCAGTGAAGAGGCGCAg > 1:3188725/1‑35 (MQ=255) ttttttcCCGCGCCAACCAGTGAAGAGGCGCAGAc > 1:2867617‑M1/8‑35 (MQ=255) attttccCCGCGCCAACCAGTGAAGAGGCGCAGAc > 1:5311233‑M1/8‑35 (MQ=255) attttccCCGCGCCAACCAGTGAAGAGGCGCAGAc > 1:7620071‑M1/8‑35 (MQ=255) aGTTTTCCCGCGCCAACCAGTGAAGAGGCGCAGAc < 1:17120385/35‑1 (MQ=255) aGTTTTACCGCTCCAACCAGTGAAGAGGCGCAGAc > 1:8603574/1‑35 (MQ=255) aGTTTTACCGCGCCAACCAGTGAAGAGGCGCAGAc > 1:10005179/1‑35 (MQ=255) ttttccCCGCGCCAACCAGTGAAGAGGCGCAGAcc > 1:11089695‑M1/7‑35 (MQ=255) gtttccCCGCGCCAACCAGTGAAGAGGCGCAGAcc > 1:6283868‑M1/7‑35 (MQ=255) ttttACCGCGCCAACCAGTGAAGAGGCGCAGACCg > 1:15170736/1‑35 (MQ=255) ttttACCGCGCCAACCAGTGAAGAGGCGCAGACCg > 1:15839083/1‑35 (MQ=255) tttccCCGCGCCAACCAGTGAAGAGGCGCAGACCg > 1:1372307‑M1/6‑35 (MQ=255) tttACCGCGCCAACCAGTGAAGAGGCGCAGACCGt > 1:17531295/1‑35 (MQ=255) tttACCGCGCCAACCAGTGAAGAGGCGCAGACCGt > 1:6149105/1‑35 (MQ=255) tttACCGCGCCAACCAGTGAAGAGGCGCAGACCGt > 1:1275717/1‑35 (MQ=255) ttgCCGCGCCAACCAGTGAAGAGGCGCAGACCGtt > 1:11484335‑M1/4‑35 (MQ=255) ttcCCGCGCCAACCAGTGAAGAGGCGCAGACCGtt > 1:18479572‑M1/4‑35 (MQ=255) ttACCGCGCCAACCAGTGAAGAGGCGCAGACCGtt > 1:13565970/1‑35 (MQ=255) ttACCGCGCCAACCAGTGAAGAGGCGCAGACCGtt > 1:10913762/1‑35 (MQ=255) ttACCGCGCCAACCAGTGAAGAGGCGCAGACCGtt > 1:5168553/1‑35 (MQ=255) tACCGCGCCAACCAGTGAAGAGGCGCAGACCGttt > 1:7453567/1‑35 (MQ=255) tACCGCGCCAACCAGTGAAGAGGCGCAGACCGttt > 1:18795419/1‑35 (MQ=255) tACCGCGCCAACCAGTGAAGAGGCGCAGACCGttt > 1:2286379/1‑35 (MQ=255) ccCCGCGCCAACCAGTGAAGAGGCGCAGACCGttt > 1:12210413‑M1/3‑35 (MQ=255) cCCGCGCCAACCAGTGAAGAGGCGCAGACCGtttt > 1:3839043‑M1/2‑35 (MQ=255) cCCGCGCCAACCAGTGAAGAGGCGCAGACCGtttt > 1:19300923‑M1/2‑35 (MQ=255) cCCGCGCCAACCAGTGAAGAGGCGCAGACCGtttt > 1:8058793‑M1/2‑35 (MQ=255) cCCGCGCCAACCAGTGAAGAGGCGCAGACCGtttt > 1:17256023‑M1/2‑35 (MQ=255) | CCGTCACTGTATACCTCCTGGACGCTAAGTTTTACCGCGCCAACCAGTGAAGAGGCGCAGACCGTTTTG > REL606/601457‑601525 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |