New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 21877970 (0.680)12 (0.160) 4/36 NT 15.1% coding (669/711 nt) cutF lipoprotein involved with copper homeostasis and adhesion
?REL606 4525951 = 82 (1.060)intergenic (+8/‑59) fimC/fimD chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis

Only 100 of 185 total aligned reads displayed.

CGCCGACTAAAGTATTGGCACCCGATACGGCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGG  >  REL606/218745‑218813
                                  |                                  
cgcCGACTAAAGTATTGGCGCCCGATACGGCAGGG                                    <  1:9156747‑M1/35‑1 (MQ=255)
cgcCGACTAAAGTATTGGCACCCGATACGGCAGGG                                    >  1:13880529‑M1/1‑35 (MQ=255)
cgcCGACTAAAGTATTGGCACCCGATACGGCAGGG                                    <  1:8391993‑M1/35‑1 (MQ=255)
 gcCGACTAAAGTATTGGCACCCGATACGGCAGGGg                                   >  1:16399097‑M1/1‑34 (MQ=255)
 gcCGACTAAAGTATTGGCACCCGATACGGCAGGGg                                   >  1:7561081‑M1/1‑34 (MQ=255)
 gcCGACTAAAGTATTGGCACCCGATACGGCAGGGg                                   >  1:19174817‑M1/1‑34 (MQ=255)
   cGACTAAAGTATTGGCACCCGATACGGCAGGGgga                                 >  1:2848623‑M1/1‑32 (MQ=255)
   cGACTAAAGTATTGGCACCCGATACGGCAGGGgaa                                 >  1:15791387‑M1/1‑32 (MQ=255)
   cGACTAAAGTATTGGCACCCGATACGGCAGGGgaa                                 >  1:18386941‑M1/1‑32 (MQ=255)
   cGACTAAAGTATTGGCACCCGATACGGCAGGGaaa                                 <  1:1948957/35‑1 (MQ=255)
    gACTAAAGTATTGGCACCCGATACGGCAGGGggaa                                >  1:5695669‑M1/1‑31 (MQ=255)
    gACTAAAGTATTGGCACCCGATACGGCAGGGgaaa                                >  1:12674645‑M1/1‑31 (MQ=255)
    gACTAAAGTATTGGCACCCGATACGGCAGGGAAAt                                <  1:2250015/35‑1 (MQ=255)
    aaCTAAAGTATTGGCACCCGATACGGCAGGGAAAt                                <  1:6909584/34‑1 (MQ=255)
       tAAAGTATTGGCACCCGATACGGCAGGGgaaattt                             >  1:10413840‑M1/1‑28 (MQ=255)
        aaaGTATTGGCACCCGATACGGCAGGGggagtttt                            >  1:9596957‑M1/1‑27 (MQ=255)
        aaaGTATTGGCACCCGATACGGCAGGGggaatttt                            >  1:2193919‑M1/1‑27 (MQ=255)
        aaaGTATTGGCACCCGATACGGCAGGGggaatttt                            >  1:11476071‑M1/1‑27 (MQ=255)
        aaaGTATTGGCACCCGATACGGCAGGGAAATTTTa                            <  1:19360299/35‑1 (MQ=255)
         aaGTATTGGCACCCGATACGGCAGGGggaattttt                           >  1:6265302‑M1/1‑26 (MQ=255)
         aaGTATTGGCACCCGATACGGCAGGGggaattttt                           >  1:16995739‑M1/1‑26 (MQ=255)
         aaGTATTGGCACCCGATACGGCAGGGAAATTTTAc                           <  1:9765582/35‑1 (MQ=255)
          aGTATTGGCACCCGATACGGCAGGGggaattttac                          >  1:12182402‑M1/1‑25 (MQ=255)
           gTATTGGCACCCGATACGGCAGGGggaattttccc                         >  1:14538603‑M1/1‑24 (MQ=255)
           gTATTGGCACCCGATACGGCAGGGAAATTTTAccc                         <  1:18963960/35‑1 (MQ=255)
            tATTGGCACCCGATACGGCAGGGGGAATTTAcccc                        >  1:16655826/1‑35 (MQ=25)
             aTTGGCACCCGATACGGCAGGGAAATTTTACCCCa                       <  1:12337839/35‑1 (MQ=255)
              ttGGCACCCGATACGGCAGGGAAATTTTACCCCaa                      <  1:8731206/35‑1 (MQ=255)
              ttGGCACCCGATACGGCAGGGAAATTTTACCCCaa                      <  1:6546190/35‑1 (MQ=255)
               tGGCGCCCGATACGGCAGGGAAATTTTACCCCAAc                     <  1:7747207/35‑1 (MQ=255)
               tGGCACCCGATACGGCAGGGAAATTTTACCCCAAc                     <  1:5726752/35‑1 (MQ=255)
               tGGCACCCGATACGGCAGGGAAATTTTACCCCAAc                     <  1:9025916/35‑1 (MQ=255)
                ggCACCCGATACGGCAGGGAAATTTTACCCCAAcc                    <  1:3129734/35‑1 (MQ=255)
                 gCACCCGATACGGCAGGGAAATTTTACCCCAACCa                   <  1:3316900/35‑1 (MQ=255)
                 gCACCCGATACGGCAGGGAAATTTTACCCCAACCa                   <  1:7025449/35‑1 (MQ=255)
                 gCACCCGATACGGCAGGGAAATTTTACCCCAACCa                   <  1:4363829/35‑1 (MQ=255)
                  cACCCGATACGGCAGGGAAATTTTACCCCAACCAg                  <  1:7131564/35‑1 (MQ=255)
                  cACCCGATACGGCAGGGAAATTTTACCCCAACCAg                  <  1:560729/35‑1 (MQ=255)
                   aCCCGATACGGCAGGGAAATTTTACCCCAACCAgg                 <  1:16182453/35‑1 (MQ=255)
                   aCCCGATACGGCAGGGAAATTTTACCCCAACCAgg                 <  1:1617138/35‑1 (MQ=255)
                   aCCCGATACGGCAGGGAAATTTTACCCCAACCAgg                 <  1:3512531/35‑1 (MQ=255)
                    cccGATACGGCAGGGAAATTTTACCCCAACCAGGa                <  1:19090185/35‑1 (MQ=255)
                     ccGATACGGCAGGGAAATTTTACCCCAACCAGGAt               <  1:11977603/35‑1 (MQ=255)
                     ccGATACGGCAGGGAAATTTTACCCCAACCAGGAt               <  1:429107/35‑1 (MQ=255)
                     ccGATACGGCAGGGAAATTTTACCCCAACCAGGAt               <  1:18415766/35‑1 (MQ=255)
                      cGATACGGCAGGGAAATTTTACCCCAACCAGGAtt              <  1:17819030/35‑1 (MQ=255)
                         tACGGCAGGGAAATTTTACCCCAACCAGGATTGCa           <  1:2535566/35‑1 (MQ=255)
                         tACGGCAGGGAAATTTTACCCCAACCAGGATTGCa           <  1:6133315/35‑1 (MQ=255)
                          aCGGCAGGGAAATTTTACCCCAACCAGGATTGCag          <  1:2393653/35‑1 (MQ=255)
                           cGGCAGGGAAATTTTACCCCAACCAGGATTGCagt         <  1:2010917/35‑1 (MQ=255)
                            tctaGGGAAATTTTACCCCAACCAGGATTGCagta        <  1:11152587/32‑1 (MQ=255)
                            ggCAGGGAAATTTTACCCCAACCAGGATTGCagta        >  1:4486236/1‑35 (MQ=255)
                            ggCAGGGAAATTTTACCCCAACCAGGATTGCagta        <  1:15386912/35‑1 (MQ=255)
                             gCAGGGggaatttttcgcctgaataaaaagaattt       >  1:14827107‑M1/1‑6 (MQ=255)
                             gCAGGGggaatttttcgcctgaataaaaagaattg       <  1:12106845‑M1/35‑30 (MQ=255)
                             gCAGGGggaatttttcgcctgaataaaaagaattg       >  1:5956050‑M1/1‑6 (MQ=255)
                             gCAGGGggaatttttcgcctgaataaaaagaattg       >  1:12035112‑M1/1‑6 (MQ=255)
                             gCAGGGggaatttttcgcctgaataaaaagaattg       <  1:7103780‑M1/35‑30 (MQ=255)
                             gCAGGGggaatttttcgcctgaataaaaagaattg       <  1:7307019‑M1/35‑30 (MQ=255)
                             gCAGGGggaatttttcgcatgaataaaaagaattg       <  1:5504980‑M1/35‑30 (MQ=255)
                             gCAGGGAAATTTTACCCCAACCAGGATTGCagtag       <  1:6022427/35‑1 (MQ=255)
                             gCAGGGAAATTTTACCCCAACCAGGATTGCagtag       <  1:2282781/35‑1 (MQ=255)
                             gCAGGGAAATTTTACCCCAACCAGGATTGCagtag       >  1:11781047/1‑35 (MQ=255)
                              cAGGGggaatttttcgcctgaataaaaagaattga      <  1:4039349‑M1/35‑31 (MQ=255)
                              cAGGGggaatttttcgcctgaataaaaagaattga      >  1:7414346‑M1/1‑5 (MQ=255)
                              cAGGGAAATTTTACCCCAACCAGGATTGCagtagt      <  1:19776524/35‑1 (MQ=255)
                              cAGGGAAATTTTACCCCAACCAGGATTGCagtagt      >  1:10845191/1‑35 (MQ=255)
                              cAGGGAAATTTTACCCCAACCAGGATTGCagtagt      >  1:15452215/1‑35 (MQ=255)
                               agtgAAATTTTACCCCAACCAGGATTGCAGTAGtt     >  1:13945862/4‑35 (MQ=255)
                               aGGTAAATTTTACCCCAACCAGGATTGCAGTAGtt     >  1:14537088/1‑35 (MQ=255)
                               aGGGggaatttttcgcctgaataaaaagaattgac     >  1:13332797‑M1/1‑4 (MQ=255)
                               aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt     <  1:14064323/35‑1 (MQ=255)
                               aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt     >  1:16315999/1‑35 (MQ=255)
                               aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt     >  1:17259719/1‑35 (MQ=255)
                               aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt     <  1:17697843/35‑1 (MQ=255)
                               aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt     >  1:10017244/1‑35 (MQ=255)
                               aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt     >  1:2369841/1‑35 (MQ=255)
                               aGGGAAATTTTACCCCAACCAGGATTGCAGTAGtt     <  1:1127472/35‑1 (MQ=255)
                                gggggaatttttcgcctgaataaaaagaattgact    >  1:4895612‑M1/1‑3 (MQ=255)
                                gggggaatttttcgcctgaataaaaagaattgact    <  1:10329934‑M1/35‑33 (MQ=255)
                                gggAAATTTTACCCCAACCAGGATTGCAGTAGttt    >  1:16858599/1‑35 (MQ=255)
                                gggAAATTTTACCCCAACCAGGATTGCAGTAGttt    >  1:12215207/1‑35 (MQ=255)
                                gggAAATTTTACCCCAACCAGGATTGCAGTAGttt    >  1:10093921/1‑35 (MQ=255)
                                gggAAATTTTACCCCAACCAGGATTGCAGTAGttt    >  1:143038/1‑35 (MQ=255)
                                 ggggaatttttcgcctgaataaaaagaattgactg   >  1:2150611‑M1/1‑2 (MQ=255)
                                 ggggaatttttcgcctgaataaaaagaattgactg   >  1:20326928‑M1/1‑2 (MQ=255)
                                 ggggaatttttcgcctgaataaaaagaattgactg   >  1:11056411‑M1/1‑2 (MQ=255)
                                 ggggaatttttcgcctgaataaaaagaattgactg   >  1:18021428‑M1/1‑2 (MQ=255)
                                 ggAAATTTTACCCCAACCAGGATTGCAGTAGTTTg   <  1:6755269/35‑1 (MQ=255)
                                 ggAAATTTTACCCCAACCAGGATTGCAGTAGTTTg   >  1:13074917/1‑35 (MQ=255)
                                 ggAAATTTTACCCCAACCAGGATTGCAGTAGTTTg   >  1:13249359/1‑35 (MQ=255)
                                  gggaatttttcgcctgaataaaaagaattgactgc  <  1:10361565‑M1/35‑35 (MQ=255)
                                  gggaatttttcgcctgaataaaaagaattgactgc  >  1:19197068‑M1/1‑1 (MQ=255)
                                  gAAATTTTACCCCAACCAGGATTGCAGTAGTTTgg  >  1:9502103/1‑35 (MQ=255)
                                  gAAATTTTACCCCAACCAGGATTGCAGTAGTTTgg  >  1:14800024/1‑35 (MQ=255)
                                  gAAATTTTACCCCAACCAGGATTGCAGTAGTTTgg  <  1:6303444/35‑1 (MQ=255)
                                  gAAATTTTACCCCAACCAGGATTGCAGTAGTTTgg  <  1:4544178/35‑1 (MQ=255)
                                  gAAATTTTACCCCAACCAGGATTGCAGTAGTTTgg  <  1:3686301/35‑1 (MQ=255)
                                  gAAATTTTACCCAAACCAGGATTGCAGTAGTTTgg  <  1:8740730/35‑1 (MQ=255)
                                  gAAATTTTACCCAAACCAGGATTGCAGTAGTTTgg  <  1:12585715/35‑1 (MQ=255)
                                  |                                  
CGCCGACTAAAGTATTGGCACCCGATACGGCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGG  >  REL606/218745‑218813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.