New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3092326 =61 (0.590)23 (0.240) 8/44 NT 23.7% coding (505/927 nt) yqhG hypothetical protein
?REL606 4085858 = 92 (0.980)intergenic (+56/‑93) cpxP/fieF periplasmic protein combats stress/ferrous iron efflux protein F

Only 100 of 146 total aligned reads displayed.

AACGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACA  >  REL606/3092292‑3092360
                                  |                                  
aaCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAAc                                    >  1:2942880/1‑35 (MQ=255)
aaCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAAc                                    >  1:8844603/1‑35 (MQ=255)
aaCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAAc                                    <  1:4643951/35‑1 (MQ=255)
 aCGCTGGCCGCTTTAGCTTCGTTGCAAAAATAACa                                   >  1:15825779/1‑35 (MQ=255)
 aCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACa                                   >  1:18386674/1‑35 (MQ=255)
 aCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACa                                   <  1:17148958/35‑1 (MQ=255)
 aCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACa                                   >  1:17573725/1‑35 (MQ=255)
 aCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACa                                   <  1:4902603/35‑1 (MQ=255)
 aCGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACa                                   <  1:5395790/35‑1 (MQ=255)
  cGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAg                                  <  1:16429158/35‑1 (MQ=255)
  cGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAg                                  >  1:8454156/1‑35 (MQ=255)
  cGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAg                                  >  1:13902207/1‑35 (MQ=255)
   gCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGc                                 <  1:2457510/35‑1 (MQ=255)
   gCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGc                                 <  1:12640660/35‑1 (MQ=255)
   gCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGc                                 <  1:11971396/35‑1 (MQ=255)
   gCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGc                                 <  1:17238622/35‑1 (MQ=255)
     tgtccGCTTTAGCTTCGTTGCAAAAAGAACAGCCg                               >  1:16617017/4‑35 (MQ=255)
     tGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCg                               >  1:8001821/1‑35 (MQ=255)
      ggCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCgg                              >  1:18066609/1‑35 (MQ=255)
       gCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGa                             >  1:2516262/1‑35 (MQ=255)
       gCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGa                             >  1:16986751/1‑35 (MQ=255)
       gCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGa                             >  1:15251492/1‑35 (MQ=255)
       gCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGa                             >  1:10242417/1‑35 (MQ=255)
         cGCTTTAGCTTCGTTGCAAAAAGAACAGCCGTAAg                           >  1:3043142/1‑35 (MQ=255)
         cGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAg                           >  1:3043991/1‑35 (MQ=255)
          gCTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAGc                          >  1:3502751/1‑35 (MQ=255)
           cTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAGcc                         >  1:704325/1‑35 (MQ=255)
           cTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAGcc                         >  1:7660458/1‑35 (MQ=255)
           cTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAGcc                         >  1:18675055/1‑35 (MQ=255)
            tttAGCTTCGTTGCAAAAAGAACAGCCGTAAGCCt                        >  1:20497707/1‑35 (MQ=255)
            tttAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCt                        >  1:1210397/1‑35 (MQ=255)
            tttAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCt                        >  1:18569116/1‑35 (MQ=255)
             ttAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCtt                       >  1:16695748/1‑35 (MQ=255)
             ttAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCtt                       >  1:14543623/1‑35 (MQ=255)
             ttAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCtt                       >  1:9889631/1‑35 (MQ=255)
              tAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCttt                      >  1:1297916/1‑35 (MQ=255)
               aGCTTCGTTGCAAAAAGAACAGCCGGAAGCCTttg                     >  1:382831/1‑35 (MQ=255)
               aGCTTCGTTGCAAAAAGAACAGCCGGAAGCCTttg                     >  1:11851588/1‑35 (MQ=255)
               aGCTTCGTTGCAAAAAGAACAGCCGGAAGCCTttg                     >  1:9298373/1‑35 (MQ=255)
                gCTTCGTTGCAAAAAGAACAGCCGGAAGCCTttgt                    >  1:2761992/1‑35 (MQ=255)
                gCTTCGTTGCAAAAAGAACAGCCGGAAGCCTttgt                    >  1:258642/1‑35 (MQ=255)
                  ttCGTTGCAAAAAGAACATCCGGAAGCCTttgttg                  >  1:3921782/1‑35 (MQ=255)
                  ttCGTTGCAAAAAGAACAGCCGGAAGCCTttgttg                  >  1:13564544/1‑35 (MQ=255)
                  ttCGTTGCAAAAAGAACAGCCGGAAGCCTttgttg                  >  1:9300451/1‑35 (MQ=255)
                   tCGTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGc                 >  1:19837182/1‑35 (MQ=255)
                    cGTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGcc                >  1:4234417/1‑35 (MQ=255)
                    cGTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGcc                >  1:9590396/1‑35 (MQ=255)
                     gTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCg               >  1:10022374/1‑35 (MQ=255)
                     gTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCg               >  1:10565234/1‑35 (MQ=255)
                     gTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCg               >  1:14988658/1‑35 (MQ=255)
                      ttGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCGa              >  1:14871149/1‑35 (MQ=255)
                      ttGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCGa              >  1:15866104/1‑35 (MQ=255)
                      taaaaaacccccCAGCCGGAAGCCTTTGTTGCCGa              >  1:475822‑M1/13‑35 (MQ=255)
                      aaaaaaacccccCAGCCGGAAGCCTTTGTTGCCGa              >  1:952132‑M1/13‑35 (MQ=255)
                      aaaaaaaaccccCAGCCGGAAGCCTTTGTTGCCGa              >  1:8333684‑M1/13‑35 (MQ=255)
                      aaaaaaaaccccCAGCCGGAAGCCTTTGTTGCCGa              >  1:6055660‑M1/13‑35 (MQ=255)
                      aaaaaaaaccccCAGCCGGAAGCCTTTGTTGCCGa              >  1:1857658‑M1/13‑35 (MQ=255)
                       aaaaaaaccccCAGCCGGAAGCCTTTGTTGCCGaa             >  1:8915614‑M1/12‑35 (MQ=255)
                        gCAAAAAGAACAGCCGGAAGCCTTTGTTGCCGAAc            >  1:16503240/1‑35 (MQ=255)
                         cAAAAAGAACAGCCGGAAGCCTTTGTTGCCGAAct           >  1:17966747/1‑35 (MQ=255)
                         cAAAAAGAACAGCCGGAAGCCTTTGTTGCCGAAct           >  1:1938314/1‑35 (MQ=255)
                         cAAAAAGAACAGCCGGAAGCCTTTGTTGCCGAAct           >  1:16975430/1‑35 (MQ=255)
                         aaaacccccCAGCCGGAAGCCTTTGTTGCCGAAct           >  1:18699186‑M1/10‑35 (MQ=255)
                         aaaaaccccCAGCCGGAAGACTTTGTTGCCGAAct           >  1:10958569‑M1/10‑35 (MQ=255)
                          aaaaccccCAGCCGGAAGCCTTTGTTGCCGAActc          >  1:10478704‑M1/9‑35 (MQ=255)
                          aaaaccccCAGCCGGAAGCCTTTGTTGCCGAActc          >  1:10554707‑M1/9‑35 (MQ=255)
                          aaaaccccCAGCCGGAAGCATTTGTTGCCGAActc          >  1:4014834‑M1/9‑35 (MQ=255)
                          aaaaaGAACAGCCGGAAGCCTTTGTTGCCGAActc          >  1:2267481/1‑35 (MQ=255)
                          aaaaaGAACAGCCGGAAGCCTTTGTTGCCGAActc          >  1:5123120/1‑35 (MQ=255)
                           aaaccccCAGCCGGAAGCCTTTGTTGCCGAActct         >  1:8190845‑M1/8‑35 (MQ=255)
                           aaaaGAACAGCCGGAAGCCTTTGTTGCCGAActct         >  1:5777105/1‑35 (MQ=255)
                           aaaaGAACAGCCGGAAGCCTTTGTTGCCGAActct         >  1:9735720/1‑35 (MQ=255)
                           aaaaGAACAGCCGGAAGCCTTTGTTGCCGAActct         >  1:14334632/1‑35 (MQ=255)
                            aaaGACCAGCCGGAAGCCTTTGTTGCCGAACTCtt        <  1:7345010/35‑1 (MQ=255)
                            aaaGAACAGCCCGAAGCCTTTGTTGCCGAACTCtt        >  1:11558625/1‑35 (MQ=255)
                             cccccCAGCCGGAAGCCTTTGTTGCCGAACTCttt       >  1:6171822‑M1/6‑35 (MQ=255)
                             cccccCAGCCGGAAGCCTTTGTTGCCGAACTCttt       >  1:11798468‑M1/6‑35 (MQ=255)
                             cccccCAGCCGGAAGCCTTTGTTGCCGAACTCttt       >  1:18428014‑M1/6‑35 (MQ=255)
                             cccccCAGCCGGAAGCCTTTGTTGCCGAACTCttt       >  1:8425348‑M1/6‑35 (MQ=255)
                             accccCAGCCGGAAGCCTTTGTTGCCGAACTCttt       >  1:6635426‑M1/6‑35 (MQ=255)
                             aaGAACAGCCGGAAGCCTTTGTTGCCGAACTCttt       >  1:14699803/1‑35 (MQ=255)
                              ccccCAGCCGGAAGCCTTTGTTGCCGAACTCTTTg      >  1:1100226‑M1/5‑35 (MQ=255)
                              ccccCAGCCGGAAGCCTTTGTTGCCGAACTCTTTg      >  1:20074789‑M1/5‑35 (MQ=255)
                              ccccCAGCCGGAAGCCTTTGTTGCAGAACTCTTTg      >  1:19560510‑M1/5‑35 (MQ=255)
                               nccCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGa     >  1:4861133‑M1/4‑35 (MQ=255)
                               gAACAGCCGGAAGCCTTTGTTGCCGAACTCTTTGa     >  1:8249124/1‑35 (MQ=255)
                               gAACAGCCGCAAGCCTTTGTTGCCGAACTCTTTGa     >  1:19120644/1‑35 (MQ=255)
                               cccCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGa     >  1:12228793‑M1/4‑35 (MQ=255)
                               cccCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGa     >  1:17677181‑M1/4‑35 (MQ=255)
                                aaCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGaa    >  1:13393126/1‑35 (MQ=255)
                                aaCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGaa    >  1:3283941/1‑35 (MQ=255)
                                aaCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGaa    >  1:17553993/1‑35 (MQ=255)
                                 cCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAAc   >  1:12301482‑M1/2‑35 (MQ=255)
                                 cCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAAc   >  1:13143798‑M1/2‑35 (MQ=255)
                                 cCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAAc   >  1:19893287‑M1/2‑35 (MQ=255)
                                 aCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAAc   >  1:4245168/1‑35 (MQ=255)
                                  CAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACa  <  1:11384898‑M1/35‑1 (MQ=255)
                                  CAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACa  <  1:18896467‑M1/35‑1 (MQ=255)
                                  CAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACa  >  1:4829462‑M1/1‑35 (MQ=255)
                                  CAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACa  <  1:3896765‑M1/35‑1 (MQ=255)
                                  |                                  
AACGCTGGCCGCTTTAGCTTCGTTGCAAAAAGAACAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACA  >  REL606/3092292‑3092360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.