New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 738279 | 23 (0.220) | 14 (0.230) | 3/28 | NT | 31.3% | coding (1582/1767 nt) | sdhA | succinate dehydrogenase flavoprotein subunit |
? | REL606 | = 3686151 | 48 (0.800) | coding (411/741 nt) | yiaT | hypothetical protein |
Only 100 of 329 total aligned reads displayed.
TCTGCATTTTGTGGAATACCGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTCCGCAGCCG > REL606/3686117‑3686185 | cTGCATTTTGTGGAATACCGATAGCTCCCCCACCc < 1:7449033‑M2/35‑2 (MQ=255) tGCATTTTGTGGAATACCGATAGCTCCCCCACCca < 1:4661692‑M2/35‑3 (MQ=255) tGCATTTTGTGGAATACCGATAGCTCCCCCACCca > 1:12050506‑M2/1‑33 (MQ=255) gCATTTTGTGGAATACCGATAGCTCCCCCACCcag < 1:19370106‑M2/35‑4 (MQ=255) gCATTTTGTGGAATACCGATAGCTCCCCCACCcag > 1:1435498‑M2/1‑32 (MQ=255) gCATTTTGTGGAATACCCATAGCTCCCCCACCcag > 1:16654990‑M2/1‑32 (MQ=255) cATTTTGTGGAATACCGATAGCTCCCCCACCcagc < 1:9119499‑M2/35‑5 (MQ=255) aTTTTGTGGAATACCGATAGCTCCCCCACCcagcc > 1:5536708‑M2/1‑30 (MQ=255) aTTTTGTGGAATACCGATAGCTCCCCCACCcagcc < 1:12643955‑M2/35‑6 (MQ=255) ttttGTGGAATACCGATAGCTCCCCCCCCcagccg > 1:18567096‑M2/1‑29 (MQ=255) ggAATACCGATAGCTCCCCCACCCAGCCGTTGCTg > 1:8289471/1‑35 (MQ=255) aCCGATAGCTCCCCCACCCAGCCGTTGCTGTTATc > 1:4015937/1‑35 (MQ=255) ccGATAGCTCCCCCCCCCAGCCGTTGCTGTTATcc < 1:13824536/35‑1 (MQ=255) cGATAGCCCCCCCCCCCAGCCGTTGCTGTTATCCa < 1:19965424/35‑1 (MQ=25) gATAGCCCCCCCCCCCAGCCGTTGCTGTTATCCAg < 1:10510423/35‑1 (MQ=25) tAGCTCCNCCACCCAGCCGTTGCTGTTATCCAGaa > 1:16801621/1‑35 (MQ=255) tAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGaa > 1:14222753/1‑35 (MQ=255) gcccccccCCCCAGCCGTTGCTGTTATCCAGAACg < 1:18023119/32‑1 (MQ=25) gCTCCCCCCCCCAGCCGTTGCTGTTATCCAGAACg < 1:6835682/35‑1 (MQ=255) cTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGt < 1:15151739/35‑1 (MQ=255) tCCCCCCCCCAGCCGTTGCTGTTATCCAGAACGTc < 1:12197388/35‑1 (MQ=255) tCCCCCCCCCAGCCGTTGCTGTTATCCAGAACGTc < 1:6766716/35‑1 (MQ=255) tCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTc > 1:8804809/1‑35 (MQ=255) cccccccCCcagccgttgttcagaaagggtttgtg > 1:20590733‑M2/2‑9 (MQ=255) cccccccCCCAGCCGTTGCctgatgcgacgctgtg > 1:20188198‑M2/2‑19 (MQ=255) cccccccCCCAGCCGTTGCctgatgcgacgcgtaa > 1:15441405‑M2/2‑19 (MQ=255) cccccCCCcagccgttgttcagaaagggtttgtgc > 1:4497900‑M2/1‑8 (MQ=255) cccccCCCcagccgttgcatacgccgtttccatca > 1:17895188‑M2/1‑8 (MQ=255) cccccCCCCtgccgttgctgccgtgctgtgtgccg < 1:10378141‑M1/35‑27 (MQ=255) cccccCCCCAGCCGTTGgcgatccggttcggccac < 1:17360047‑M1/35‑19 (MQ=255) cccccCCCCAGCCGTTGgcgatccggttcggccac < 1:9323223‑M1/35‑19 (MQ=255) cccccCCCCAGCCGTTGCctgatgcgacgcgtaat > 1:15859047‑M2/1‑18 (MQ=255) cccccCCCCAGCCGTTGCctgatgcgacgcgtaat > 1:2536266‑M2/1‑18 (MQ=255) cccccCCCCAGCCGTTGCctgatgcgacgcgtaat > 1:3837067‑M2/1‑18 (MQ=255) ccccCCCCAGCCGTTGtaggcctgataagacgcgc < 1:2865566‑M1/35‑20 (MQ=255) ccccCCCCAGCCGTTGtaggcctgataagacgcgc < 1:6131751‑M1/35‑20 (MQ=255) ccccCCCCAGCCGTTGgcgatccggttcggccacg < 1:12422903‑M1/35‑20 (MQ=255) ccccCCCCAGCCGTTGgcgatccggttcggccacg < 1:8331632‑M1/35‑20 (MQ=255) ccccCCCCAGCCGTTGCctgatgcgacgctgtgcg > 1:2762524‑M2/1‑17 (MQ=255) ccccCCCCAGCCGTTGCctgatgcgacgctgtgcg > 1:10064183‑M2/1‑17 (MQ=255) ccccCCCCAGCCGTTGCctgatgcgacgctgtgcg > 1:3429507‑M2/1‑17 (MQ=255) ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg > 1:18881135‑M2/1‑17 (MQ=255) ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg > 1:17035659‑M2/1‑17 (MQ=255) ccccACCCAGCCGTTGCTGTTATCCAGAACGTccg > 1:15045961/1‑35 (MQ=255) cccccccagccgttgttcagaaagggtttgtgccc > 1:6588584‑M2/1‑6 (MQ=255) cccccccagccgttgttcagaaagggtttgtgccc > 1:4808518‑M2/1‑6 (MQ=255) cccccccagccgttgcatacgccgtttccatcagg > 1:10006171‑M2/1‑6 (MQ=255) cccccccagccgttgcatacgccgtttccatcagg > 1:12125571‑M2/1‑6 (MQ=255) cccccccaGCCGTTGgcgatccggttcggccacgg < 1:6308722‑M1/35‑21 (MQ=255) cccccccaGCCGTTGCctgatgcgacgctgtgcgt > 1:14587935‑M2/1‑16 (MQ=255) cccccccaGCCGTTGCctgatgcgacgcgtaatgc > 1:18798418‑M2/1‑16 (MQ=255) cccccccaGCCGTTGCctgatgcgacgcgtaatgc > 1:7228551‑M2/1‑16 (MQ=255) cccccccaGCCGTTGCctgatgcgacgcgtaatgc > 1:14693484‑M2/1‑16 (MQ=255) cccCCCCtgccgttgctgccgtgctgtgtgccgca < 1:7530558‑M1/35‑29 (MQ=255) cccccctgccgttgctgccgtgctgtgtgccgcaa < 1:10642301‑M1/32‑30 (MQ=255) cccccctgccgttgctgccgtgctgtgtgccgcaa < 1:806310‑M1/32‑30 (MQ=255) ccccccagccgttgttcagaaagggtttgtgcccc > 1:10265387‑M2/1‑5 (MQ=255) ccccccagccgttgcatacgccgtttccatcaggt > 1:9762873‑M2/1‑5 (MQ=255) ccccccagccgttgcatacgccgtttccatcaggt > 1:12917685‑M2/1‑5 (MQ=255) ccccccaGCCGTTGCctgatgcgacgcgtaatgcg > 1:11644750‑M2/1‑15 (MQ=255) ccccccaGCCGTTGCctgatgcgacgcgtaatgcg > 1:20453023‑M2/1‑15 (MQ=255) ccccccaGCCGTTGCctgatgcgacgcgtaatgcg > 1:1623568‑M2/1‑15 (MQ=255) ccccccaGCCGTTGCctgatgcgacgcgtaatgcg > 1:13938402‑M2/1‑15 (MQ=255) ccgccagccGTTGCctgatgcgacgcgtaatgcgt > 1:16385775‑M2/4‑14 (MQ=255) cccccagccgttgttcagaaagggtttgtgccccg > 1:2953027‑M2/3‑4 (MQ=255) cccccagccgttgcatacgccgtttccatcaggtt > 1:4136274‑M2/3‑4 (MQ=255) cccccagccgttgcatacgccgtttccatcaggtt > 1:13481049‑M2/3‑4 (MQ=255) cccccagcCGTTGgcgatccggttcggccacggaa < 1:11981154‑M1/33‑23 (MQ=255) cccccagcCGTTGCctgatgcgacgctgtgcgtct > 1:6032294‑M2/3‑14 (MQ=255) cccccagcCGTTGCctgatgcgacgctgtgcgtct > 1:5958548‑M2/3‑14 (MQ=255) cccccagcCGTTGCctgatgcgacgctgtgcgtct > 1:5728360‑M2/3‑14 (MQ=255) cccccagcCGTTGCctgatgcgacgcgtaatgcgt > 1:11006735‑M2/3‑14 (MQ=255) cccccagcCGTTGCctgatgcgacgcgtaatgcgt > 1:9711751‑M2/3‑14 (MQ=255) cccccagcCGTTGCctgatgcgacgcgtaatgcgt > 1:696539‑M2/3‑14 (MQ=255) cccccagcCGTTGCctgatgcgacgcgtaatgcgt > 1:13294247‑M2/3‑14 (MQ=255) cacccaGCCGTTGCTGTTATCCAGAACGGccgccg > 1:18277765/1‑33 (MQ=25) ccccggccgttgctgccgtgctgtgtgccgcaatg < 1:19018751‑M1/34‑32 (MQ=255) ccccagccgttgttcagaaagggtttgtgccccgg > 1:1819782‑M2/2‑3 (MQ=255) ccccagccgttgcatacgccgtttccatcaggtta > 1:7130877‑M2/2‑3 (MQ=255) ccccagCCGTTGgcgatccggttcggccacggaat < 1:1490911‑M1/34‑24 (MQ=255) ccccagCCGTTGgcgatccggttcggccacggaat < 1:15350068‑M1/34‑24 (MQ=255) ccccagCCGTTGgagatccggttcggccacggaat < 1:20506821‑M1/34‑24 (MQ=255) ccccagCCGTTGCctgatgcgacgcgtaatgcgtc > 1:16024353‑M2/2‑13 (MQ=255) ccccagCCGTTGCctgatgcgacgcgtaatgcgtc > 1:11479432‑M2/2‑13 (MQ=255) ccccagCCGTTGCctgatgagacgcgtaatgcgtc > 1:5323601‑M2/2‑13 (MQ=255) acccaGCCGTTGCTGTTATCCAGAACGTccgcagc > 1:3317671/1‑35 (MQ=255) gccagCCGTTGCctgatgcgacgctgtgcgtctta > 1:14781982‑M2/2‑12 (MQ=255) gccagCCGTGGCctgatgcgacgctgtgcgtctta > 1:7605133‑M2/2‑12 (MQ=255) cccagccgttgttcagaaagggtttgtgccccggc > 1:317262‑M2/1‑2 (MQ=255) cccaGCCGTTGtaggcctgataagacgcgcaagcg < 1:9533212‑M1/35‑25 (MQ=255) cccaGCCGTTGgcgatccggttcggccacggaata < 1:17592434‑M1/35‑25 (MQ=255) cccaGCCGTTGCctgatgcgacgcgtaatgcgtct > 1:17827781‑M2/1‑12 (MQ=255) cccaGCCGTTGCctgatgcgacgcgtaatgcgtct > 1:4901450‑M2/1‑12 (MQ=255) cccaGCCGTTGCctgatgcgacgcgtaatgcgtct > 1:15600769‑M2/1‑12 (MQ=255) cccaGCCGTTGCctgatgcgacgcgtaatgcgtct > 1:2648281‑M2/1‑12 (MQ=255) ccaGCCGTTGtaggcctgataagacgcgcaagcgt < 1:783597‑M1/35‑26 (MQ=255) ccaGCCGTTGgcgatccggttcggccacggaataa < 1:7333455‑M1/35‑26 (MQ=255) ccaGCCGTTGgcgatccggttcggccacggaataa < 1:2210182‑M1/35‑26 (MQ=255) ccaGCCGTTGgcgatccggttcggccacggaataa < 1:19083427‑M1/35‑26 (MQ=255) ccaGCCGTTGCctgatgcgacgctgtgcgtcttat > 1:2405370‑M2/1‑11 (MQ=255) | TCTGCATTTTGTGGAATACCGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTCCGCAGCCG > REL606/3686117‑3686185 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |