New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1255973 = | 72 (0.700) | 12 (0.140) | 4/40 | NT | 19.0% | coding (130/2868 nt) | ycgV | predicted adhesin |
? | REL606 | = 3223859 | 42 (0.490) | coding (537/696 nt) | yraI | predicted periplasmic pilin chaperone |
CGCTATTGGTTTGAATGCAATTATATTTCCCCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1256010‑1255973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcCAATCCGGCAAATACGACGTAATATTCAGTTGGG < REL606/3223859‑3223826 CGCTATTGGTTTGAATGCAATTATATTTCCCCCCC < 1:12937095/35‑1 CGCTATTGGTTTGAATGCAATTATATTTCCCCCCC < 1:15483620/35‑1 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT < 1:594120/35‑1 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT < 1:5830421/35‑1 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT > 1:11256517/1‑35 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT < 1:12373380/35‑1 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT > 1:12381199/1‑35 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT > 1:18842355/1‑35 GCTATTGGTTTGAATGCAATTATATTTCCCCCCCT < 1:16129649/35‑1 GCTATTGGTTTGAATGCAATTATATTTACCCCCCT < 1:10655079/35‑1 CTATTGGTTTGAATGCAATTATATTTCCCCCCCTG < 1:5826193/35‑1 CTATTGGTTTGAATGCAATTATATTTCCCCCCCTG < 1:5782422/35‑1 CTATTGGTTTGAATGCAATTATATTTCCCCCCCTG > 1:4593934/1‑35 CTATTGGTTTGAATGCAATTATATTTCCCCCCCTG > 1:10314298/1‑35 TATTGGTTTGAATGCAATTATATTTCCCCCCCTGC > 1:14288450/1‑35 TATTGGTTTGAATGCAATTATATTTCCCCCCCTGC > 1:20347213/1‑35 ttTTTCCCCCCCTGCCAATCCGGCAAATACGACGT < 1:16270749/33‑1 ttTTTCCCCCCCTGCCAATCCGGCAAATACGACGT < 1:2173898/33‑1 ttTTTCCCCCCCTGCCAATCCGGCAAATACGACGT < 1:16706786/33‑1 ttTTTCCCCCCCTGCCAATCCGGCAAATACGACGT < 1:5174791/33‑1 ttTTTCCCCCCCTGCCAATCCGGCAAATACGACGT < 1:11405117/33‑1 ttTTTCCCCCCCTGCCAATCCGGCAAATACGACGT < 1:19415412/33‑1 TTTCCCCCCCTGCCAATCCGGCAAATACGACGTAA < 1:6505031/35‑1 TTCCCCCCCTGCCAATCCGGCAAATACGACGTAAT < 1:9875090/35‑1 TCCCCCCCTGCCAATCCGGCAAATACGACGTAATA < 1:3219985/35‑1 CCCCCCCTGCCAATCCGGCAAATACGACGTAATAT < 1:3945430/35‑1 CCCCCCCTGCCAATCCGGCAAATACGACGTAATAT < 1:10400319/35‑1 CCCCCCCTGCCAATCCGGCAAATACGACGTAATAT < 1:15299865/35‑1 CCCCCCTGCCAATCCGGCAAATACGACGTAATATT < 1:6567349/35‑1 CCCCCTGCCAATCCGGCAAATACGACGTAATATTC < 1:11375488/35‑1 CCCCCTGCCAATCCGGCAAATACGACGTAATATTC < 1:4602869/35‑1 CCCCCTGCCAATCCGGCAAATACGACGTAATATTC < 1:7830448/35‑1 CCCCCTGCCAATCCGGCAAATACGACGTAATATTC < 1:3485255/35‑1 CCCCCTGCCAATCCGGCAAATACGACGTAATATTC < 1:27625/35‑1 CCCCCTGCCAATCCGGCAAATACGACGTAATATTC < 1:17261712/35‑1 CCCCTGCCAATCCGGCAAATACGACGTAATATTCA < 1:20539765/35‑1 CCCTGCCAATCCGGCAAATACGACGTAATATTCAG < 1:4100215/35‑1 CCCTGCCAATCCGGCAAATACGACGTAATATTCAG < 1:9596495/35‑1 CTGCCAATCCGGCAAATACGACGTAATATTCAGTT > 1:189368/1‑35 CTGCCAATCCGGCAAATACGACGTAATATTCAGTT > 1:14751169/1‑35 GCCAATCCGGCAAATACGACGTAATATTCAGTTGt > 1:1428666/1‑34 GCCAATCCGGCAAATACGACGTAATATTCAGTTGG < 1:16487033/35‑1 CCAATCCGGCAAATACGACGTAATATTCAGTTGGG > 1:1324206/1‑35 CCAATCCGGCAAATACGACGTAATATTCAGTTGGG > 1:13410612/1‑35 CCAATCCGGCAAATACGACGTAATATTCAGTTGGG < 1:18700468/35‑1 CCAATCCGGCAAATACGACGTAATATTCAGTTGGG < 1:17789208/35‑1 CGCTATTGGTTTGAATGCAATTATATTTCCCCCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1256010‑1255973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcCAATCCGGCAAATACGACGTAATATTCAGTTGGG < REL606/3223859‑3223826 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |