New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 447249 =84 (0.820)18 (0.180) 5/46 NT 17.5% intergenic (‑21/‑197) tesB/ybaY acyl‑CoA thioesterase II/predicted outer membrane lipoprotein
?REL606 1286712 = 89 (0.900)intergenic (+36/‑147) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein

Only 100 of 168 total aligned reads displayed.

AGCGCCTGACTCATATAACTCTCCAGTAACAAAGCTGCCGCAGCAAGCCAAAGTGAGTTGAGTATAACG  >  REL606/447215‑447283
                                  |                                  
acaactcaccccgcaccgtgcccataaaaaaaccc                                    <  1:9418298‑M1/1‑1 (MQ=255)
acaactcaccccgcaccgtgcccataaaaaaaccc                                    <  1:6447169‑M1/1‑1 (MQ=255)
acaactcaccccgcaccgtgcccataaaaaaaccc                                    <  1:20186526‑M1/1‑1 (MQ=255)
acaactcaccccgcaccgtgcccataaaaaaaccc                                    >  1:12142534‑M1/35‑35 (MQ=255)
aGCGCCTGACTCATATAACTCTCCAGTAACAAAGc                                    <  1:10442093/35‑1 (MQ=255)
aGCGCCTGACTCATATAACTCTCCAGTAACAAAGc                                    >  1:5146505/1‑35 (MQ=255)
aGCGCCTGACTCATATAACTCTCCAGTAACAAAGc                                    <  1:17092719/35‑1 (MQ=255)
 gcgcCTGACTCATATAACTCTCCAGTAACAAAGCt                                   <  1:4484980/35‑1 (MQ=255)
 gcgcCTGACTCATATAACTCTCCAGTAACAAAGCt                                   <  1:20423755/35‑1 (MQ=255)
 gcgcCTGACTCATATAACTCTCCAGTAACAAAGCt                                   >  1:19520438/1‑35 (MQ=255)
 gcgcCTGACTCATATAACTCTCCAGTAACAAAGCt                                   >  1:13097235/1‑35 (MQ=255)
 gcgcCTGACTCATATAACTCTCCAGTAACAAAGCt                                   >  1:1002871/1‑35 (MQ=255)
  cgcCTGACTCATATAACTCTCCAGTAACAAAGCTg                                  >  1:7792745/1‑35 (MQ=255)
  cgcCTGACTCATATAACTCTCCAGTAACAAAGCTg                                  >  1:10887005/1‑35 (MQ=255)
  cgcCTGACTCATATAACTCTCCAGTAACAAAGCTg                                  >  1:19529711/1‑35 (MQ=255)
  cgcCTGACTCATATAACTCTCCAGTAACAAAGCTg                                  <  1:6053759/35‑1 (MQ=255)
  cgcCTGACTCATATAACTCTCCAGTAACAAAGCTg                                  >  1:11217447/1‑35 (MQ=255)
   gcCTGACTCATATAACTCTCCAGTAACAAAGCTGc                                 >  1:7121106/1‑35 (MQ=255)
   gcCTGACTCATATAACTCTCCAGTAACAAAGCTGc                                 >  1:18423216/1‑35 (MQ=255)
   gcCTGACTCATATAACTCTCCAGTAACAAAGCTGc                                 >  1:17310227/1‑35 (MQ=255)
    ccTGACTCATATAACTCTCCAGTAACAAAGCTGcc                                >  1:3464405/1‑35 (MQ=255)
    ccTGACTCATATAACTCTCCAGTAACAAAGCTGcc                                <  1:45016/35‑1 (MQ=255)
    ccTGACTCATATAACTCTCCAGTAACAAAGCTGcc                                >  1:4815980/1‑35 (MQ=255)
     cTGACTCATATAACTCTCCAGTAACAAAGCTGCCg                               >  1:3282310/1‑35 (MQ=255)
     cTGACTCATATAACTCTCCAGTAACAAAGCTGCCg                               >  1:7845483/1‑35 (MQ=255)
     cTGACTCATATAACTCTCCAGTAACAAAGCTGCCg                               >  1:14529964/1‑35 (MQ=255)
      tGACTCATATAACTCTCCAGTAACAAAGCTGCCgc                              >  1:13621900/1‑35 (MQ=255)
       gACTCATATAACTCTCCAGTAACAAAGCTGCCgca                             >  1:13006998/1‑35 (MQ=255)
       gACTCATATAACTCTCCAGTAACAAAGCTGCCgca                             >  1:13246792/1‑35 (MQ=255)
       gACTCATATAACTCTCCAGTAACAAAGCTGCCgca                             >  1:13802203/1‑35 (MQ=255)
       gACTCATATAACTCTCCAGTAACAAAGCTGCCgca                             >  1:14317363/1‑35 (MQ=255)
        aCTCATATAACTCTCCAGTAACAAAGCTGCCgcag                            >  1:1538692/1‑35 (MQ=255)
        aCTCATATAACTCTCCAGTAACAAAGCTGCCgcag                            >  1:8973277/1‑35 (MQ=255)
        aCTCATATAACTCTCCAGTAACAAAGCTGCAgcag                            <  1:7109925/35‑1 (MQ=255)
         cTCATATAACTCTCCAGTAACAAAGCTGCCgcagc                           >  1:4994534/1‑35 (MQ=255)
         cTCATATAACTCTCCAGTAACAAAGCTGCAgcagc                           <  1:10790700/35‑1 (MQ=255)
           cATATAACTCTCCAGTAACAAAGCTGCCGCAGCaa                         >  1:20239866/1‑35 (MQ=255)
           cATATAACTCTCCAGTAACAAAGCTGCCGCAGCaa                         >  1:6838381/1‑35 (MQ=255)
           cATATAACTCTCCAGTAACAAAGCTGCCGCAGCaa                         >  1:13691649/1‑35 (MQ=255)
           cATATAACTCTCCAGTAACAAAGCTGCCGCAGCaa                         >  1:15638031/1‑35 (MQ=255)
            atatAACTCTCCAGTAACAAAGCTGCCGCAGCAAg                        >  1:5627076/1‑35 (MQ=255)
            atatAACTCTCCAGTAACAAAGCTGCCGCAGCAAg                        >  1:14003742/1‑35 (MQ=255)
            atatAACTCTCCAGTAACAAAGCTGCCGCAGCAAg                        >  1:8819576/1‑35 (MQ=255)
             tataACTCTCCAGTAACAAAGCTGCCGCAGCAAGc                       >  1:17353742/1‑35 (MQ=255)
             tataACTCTCCAGTAACAAAGCTGCCGCAGCAAGc                       >  1:18259036/1‑35 (MQ=255)
             tataACTCTCCAGTAACAAAGCTGCCGCAGCAAGc                       >  1:9656006/1‑35 (MQ=255)
             tataACTCTCCAGTAACAAAGCTGCCGCAGCAAGc                       >  1:12703363/1‑35 (MQ=255)
             tataACTCTCCAGTAACAAAGCTGCCGCAGCAAGc                       >  1:5156517/1‑35 (MQ=255)
             nataACTCTCCAGTAACAAAGCTGCCGCAGCAAGc                       >  1:15979692/2‑35 (MQ=255)
              ataACTCTCCAGTAACAAAGCTGCCGCAGGCAGcc                      >  1:17311208/1‑35 (MQ=38)
              ataACTCTCCAGTAACAAAGCTGCCGCAGCAAGcc                      >  1:4707834/1‑35 (MQ=255)
              ataACTCTCCAGTAACAAAGCTGCCGCAGCAAGcc                      >  1:17517281/1‑35 (MQ=255)
               taACTCTCCAGTAACAAAGCTGCCGCAGCAAGCCa                     >  1:7439829/1‑35 (MQ=255)
               taACTCTCCAGTAACAAAGCTGCCGCAGCAAGCCa                     >  1:18751153/1‑35 (MQ=255)
                    ctcCAGTAACAAAGCTGCCGCAGCAAGCCAAAGtg                >  1:2581742/1‑35 (MQ=255)
                    ctcCAGTAACAAAGCTGCCGCAGCAAGCCAAAGtg                >  1:14342786/1‑35 (MQ=255)
                    ctcCAGTAACAAAGCTGCCGCAGCAAGCCAAAGtg                >  1:11391731/1‑35 (MQ=255)
                     tcCAGTAACAAAGCTGCCGCAGCAAGCCAAAGtga               >  1:19193849/1‑35 (MQ=255)
                      ccaaaaaaaaccCTGCCGCAGCAAGCCAAAGtgag              >  1:4015481‑M1/13‑35 (MQ=255)
                      ccAGTAACAAAGCTGCCGCAGCAAGCCAAAGtgag              >  1:19228499/1‑35 (MQ=255)
                      ccAGTAACAAAGCTGCCGCAGCAAGCCAAAGtgag              >  1:16275823/1‑35 (MQ=255)
                      caaaaaaaaaccCTGCCGCAGCAAGCCAAAGtgag              >  1:16550107‑M1/13‑35 (MQ=255)
                       cAGTAACAAAGCTGCCGCAGCAAGCCAAAGtgagt             >  1:5323812/1‑35 (MQ=255)
                        aGTAACAAAGCTGCCGCAGCAAGCCAAAGtgagtt            >  1:20489050/1‑35 (MQ=255)
                        aGTAACAAAGCTGCCGCAGCAAGCCAAAGtgagtt            >  1:18552543/1‑35 (MQ=255)
                        aGTAACAAAGCTGCCGCAGCAAGCCAAAGtgagtt            >  1:17838450/1‑35 (MQ=255)
                         gTAACAAAGCTGCCGCAGCAAGCCAAAGtgagttg           >  1:20001771/1‑35 (MQ=255)
                         gTAACAAAGCTGCCGCAGCAAGCCAAAGtgagttg           >  1:4673110/1‑35 (MQ=255)
                         gTAACAAAGCTGCCCCAGCAAGCCAAAGtgagttg           >  1:9319342/1‑35 (MQ=255)
                         aaaaaaaccCTGCCGCAGCAAGCCAAAGtgagttg           >  1:19445803‑M1/10‑35 (MQ=255)
                           aaaaaccCTGCCGCAGCAAGCCAAAGtgagttgag         >  1:11804003‑M1/8‑35 (MQ=255)
                           aaCAAAGCTGCCGCAGCAAGCCAAAGtgagttgag         >  1:11095133/1‑35 (MQ=255)
                           aaCAAAGCTGCCGCAGCAAGCCAAAGtgagttgag         >  1:16562191/1‑35 (MQ=255)
                           aaCAAAGCTGCCGCAGCAAGCCAAAGtgagttgag         >  1:15043709/1‑35 (MQ=255)
                            aCAAAGCTGCCGCAGCAAGCCAAAGttagttgagt        >  1:12724428/1‑35 (MQ=255)
                            aCAAAGCTGCCGCAGCAAGCCAAAGtgagttgagt        >  1:2913392/1‑35 (MQ=255)
                            aCAAAGCTGCCGCAGCAAGCCAAAGtgagttgagt        >  1:615263/1‑35 (MQ=255)
                            aCAAAGCTGCCGCAGCAAGCCAAAGtgagttgagt        >  1:11945363/1‑35 (MQ=255)
                             caaccCTGCCGCAGCAAGCCAAAGTGAGTTGAGta       >  1:9866277‑M1/6‑35 (MQ=255)
                             caaccCTGCCGCAGCAAGCCAAAGTGAGTTGAGta       >  1:5076293‑M1/6‑35 (MQ=255)
                             cAAAGCTGCCGCAGCAAGCCAAAGTGAGTTGAGta       >  1:5427668/1‑35 (MQ=255)
                             cAAAGCTGCCGCAGCAAGCCAAAGTGAGTTGAGta       >  1:8234635/1‑35 (MQ=255)
                             aaaacCTGCCGCAGCAAGCCAAAGTGAGTTGAGta       >  1:14688577‑M1/6‑35 (MQ=255)
                              aaccCTGCCGCAGCAAGCCAAAGTGAGTTGAGtat      >  1:4593894‑M1/5‑35 (MQ=255)
                              aaaGCTGCCGCAGCAAGCCAAAGTGAGTTGAGtat      >  1:2722127/1‑35 (MQ=255)
                              aaaGCTGCCGCAGCAAGCCAAAGTGAGTTGAGtat      >  1:13519193/1‑35 (MQ=255)
                              aaaGCTGCCGCAGCAAGCCAAAGTGAGTTGAGtat      >  1:5904895/1‑35 (MQ=255)
                               accCTGCCGCAGCAAGCCAAAGTGAGTTGAGtata     >  1:4199638‑M1/4‑35 (MQ=255)
                                gcCGGCCGCAGCAAGCCAAAGTGAGTTGAGTATaa    >  1:1108847‑M1/3‑35 (MQ=255)
                                ccCTGCCGCAGCAAGCCAAAGTGAGTTGAGTATaa    >  1:6752842‑M1/3‑35 (MQ=255)
                                 gCTGCCGCAGCAAGCCAAAGTGAGTTGAGTATAAc   >  1:10334137/1‑35 (MQ=255)
                                 cCTGCCGCAGCAAGCCAAAGTGAGTTGAGTATAAc   >  1:4424951‑M1/2‑35 (MQ=255)
                                 cCTGCCGCAGCAAGCCAAAGTGAGTTGAGTATAAc   >  1:4106054‑M1/2‑35 (MQ=255)
                                 cCTGCCGCAGCAAGCCAAAGTGAGTTGAGTATAAc   >  1:8794015‑M1/2‑35 (MQ=255)
                                  CTGCCGCAGCAAGCCAAAGTGAGTTGAGTATAACg  >  1:12295548‑M1/1‑35 (MQ=255)
                                  CTGCCGCAGCAAGCCAAAGTGAGTTGAGTATAACg  >  1:11461786‑M1/1‑35 (MQ=255)
                                  CTGCCGCAGCAAGCCAAAGTGAGTTGAGTATAACg  >  1:19393917‑M1/1‑35 (MQ=255)
                                  CTGCCGCAGCAAGCCAAAGTGAGTTGAGTATAACg  <  1:20366661‑M1/35‑1 (MQ=255)
                                  CTGCCGCAGCAAGCCAAAGTGAGTTGAGTATAACg  >  1:3669125‑M1/1‑35 (MQ=255)
                                  CTGCCGCAGCAAGCCAAAGTGAGTTGAGTATAACg  >  1:10721883‑M1/1‑35 (MQ=255)
                                  |                                  
AGCGCCTGACTCATATAACTCTCCAGTAACAAAGCTGCCGCAGCAAGCCAAAGTGAGTTGAGTATAACG  >  REL606/447215‑447283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.