New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 10868572 (0.700)24 (0.310) 8/36 NT 29.3% coding (577/1152 nt) ftsZ cell division protein FtsZ
?REL606 = 2243652 62 (0.800)coding (1242/1944 nt) ccmF heme lyase, CcmF subunit

Only 100 of 206 total aligned reads displayed.

GTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTGTGCAAGGTATCGCTGAACTGATTACTCGTCCGGG  >  REL606/108651‑108719
                                  |                                  
gTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    <  1:15875151‑M1/35‑1 (MQ=255)
gTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    <  1:20338407‑M1/35‑1 (MQ=255)
gTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    >  1:925572‑M1/1‑35 (MQ=255)
gTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    <  1:5584719‑M1/35‑1 (MQ=255)
 tttGGCGCAGCGAACGATGTACTGAAAGGCGCtgt                                   <  1:5110047/35‑1 (MQ=255)
 tttGGCGCAGCGAACGATGTACTGAAAGGCGCtgt                                   <  1:6206432/35‑1 (MQ=255)
 tttGGCGCAGCGAACGATGTACTGAAAGGCGCTGg                                   >  1:19954661‑M1/1‑34 (MQ=255)
  ttGGCGCAGCGAACGATGTACTGAAAGGCGCtgtg                                  <  1:17150948/35‑1 (MQ=255)
  ttGGCGCAGCGAACGATGTACTGAAAGGCGCTGgg                                  >  1:16773438‑M1/1‑33 (MQ=255)
  ttGGCGCAGCGAACGATGTACTGAAAGGCGCTGgg                                  >  1:6464542‑M1/1‑33 (MQ=255)
  ctGGCGCAGCGAACGATGTACTGAAAGGCGCtgtg                                  <  1:4532739/34‑1 (MQ=255)
   tGGCGCAGCGAACGATGTACTGAAAGGCGCTGggg                                 >  1:16692216‑M1/1‑32 (MQ=255)
    ggCGCAGCGAACGATGTACTGAAAGGCGCTGgggg                                >  1:974305‑M1/1‑31 (MQ=255)
     gcgcAGCGAACGATGTACTGAAAGGCGCTGTGCaa                               <  1:13138002/35‑1 (MQ=255)
      cgcAGCGAACGATGTACTGAAAGGCGCTGggggag                              >  1:6519085‑M1/1‑29 (MQ=255)
      cgcAGCGAACGATGTACTGAAAGGCGCTGTGCAAg                              <  1:2936403/35‑1 (MQ=255)
      cgcAGCGAACGATGTACTGAAAGGCGCTGTGCAAg                              <  1:16254116/35‑1 (MQ=255)
      cgcAGCGAACGATGTACTGAAAGGCGCTGGGCGAg                              >  1:9412411/1‑35 (MQ=25)
       gcAGCGAACGATGTACTGAAAGGCGCTGggggggg                             >  1:15605818‑M1/1‑28 (MQ=255)
       gcAGCGAACGATGTACTGAAAGGCGCTGggggagg                             >  1:8357909‑M1/1‑28 (MQ=255)
        cAGCGAACGATGTACTGAAAGGCGCTGgggggggg                            >  1:12008510‑M1/1‑27 (MQ=255)
        cAGCGAACGATGTACTGAAAGGCGCTGgggggggg                            >  1:14842749‑M1/1‑27 (MQ=255)
        cAGCGAACGATGTACTGAAAGGCGCTGggggaggg                            >  1:5440666‑M1/1‑27 (MQ=255)
        cAGCGAACGATGTACTGAAAGGCGCTGggggaggg                            >  1:3994694‑M1/1‑27 (MQ=255)
        cAGCGAACGATGTACTGAAAGGCGCTGTGCAAGGt                            <  1:5518950/35‑1 (MQ=255)
        cAGCGAACGATGTACTGAAAGGCGCTGTGCAAGGt                            <  1:9332402/35‑1 (MQ=255)
         aGCGAACGATGTACTGAAAGGCGCTGgggggggga                           >  1:4766888‑M1/1‑26 (MQ=255)
         aGCGAACGATGTACTGAAAGGCGCTGggggagggg                           >  1:236580‑M1/1‑26 (MQ=255)
         aGCGAACGATGTACTGAAAGGCGCTGTGCAAGGTa                           <  1:2343257/35‑1 (MQ=255)
         aGCGAACGATGTACTGAAAGGCGCTGGGGAAggcg                           >  1:17643222/1‑33 (MQ=21)
          gCGAACGATGTACTGAAAGGCGCTGggggagggat                          >  1:6105602‑M1/1‑25 (MQ=255)
           cGAACGATGTACTGAAAGGCGCTGTGCAAGGTATc                         <  1:11640213/35‑1 (MQ=255)
            gAACGATGTACTGAAAGGCGCTGggggagggatcg                        >  1:10010171‑M1/1‑23 (MQ=255)
             accGATGTACTGAAAGGCGCTGTGCAAGGTATCGc                       <  1:20114189/33‑1 (MQ=255)
             aaCGATGTACTGAAAGGCGCTGggggagggatcgc                       >  1:17420108‑M1/1‑22 (MQ=255)
             aaCGATGTACTGAAAGGCGCTGTGCAAGGTATCGc                       <  1:2775263/35‑1 (MQ=255)
             aaCGATGTACTGAAAGGCGCTGTGCAAGGTATCGc                       <  1:1969169/35‑1 (MQ=255)
             aaCGATGTACTGAAAGGCGCTGTGCAAGGTATCGc                       <  1:12071991/35‑1 (MQ=255)
              aCGATGTACTGAAAGGCGCTGggggagggatcgct                      >  1:11808550‑M1/1‑21 (MQ=255)
              aCGATGTACTGAAAGGCGCTGggggagggatcgcc                      >  1:20104923‑M1/1‑21 (MQ=255)
              aCGATGTACTGAAAGGCGCTGTGCAAGGTATCGCt                      <  1:11062158/35‑1 (MQ=255)
               cGATGTACTGAAAGGCGCTGTGCAAGGTATCGCTg                     <  1:19396247/35‑1 (MQ=255)
                 aTGTACTGAAAGGCGCTGTGCAAGGTATCGCTGaa                   <  1:20416684/35‑1 (MQ=255)
                 aTGTACTGAAAGGCGCTGTGCAAGGTATCGCTGaa                   <  1:12333963/35‑1 (MQ=255)
                  tGTACTGAAAGGCGCTGTGCAAGGTATCGCTGAAc                  <  1:14423761/35‑1 (MQ=255)
                   gTACTGAAAGGCGCTGTGCAAGGTATCGCTGAACt                 <  1:6714459/35‑1 (MQ=255)
                   gTACTGAAAGGCGCTGTGCAAGGTATCGCTGAACt                 <  1:2276423/35‑1 (MQ=255)
                    tACTGAAAGGCGCTGTGCAAGGTATCGCTGAACTg                <  1:6362680/35‑1 (MQ=255)
                    tACTGAAAGGCGCTGTGCAAGGTATCGCTGAACTg                <  1:10339560/35‑1 (MQ=255)
                    tACTGAAAGGCGCTGTGCAAGGTATCGCTGAACTg                <  1:16476078/35‑1 (MQ=255)
                     aCTGAAAGGCGCTGTGCAAGGTATCGCTGAACTGa               <  1:984097/35‑1 (MQ=255)
                     aCTGAAAGGCGCTGTGCAAGGTATCGCTGAACTGa               <  1:1122163/35‑1 (MQ=255)
                      cTGAAAGGCGCTGTGCAAGGTATCGCTGAACTGAt              <  1:7813253/35‑1 (MQ=255)
                      cTGAAAGGCGCTGGGGGAGGGATCGCTGGACTGAt              >  1:18726876/1‑35 (MQ=9)
                       tGAAAGGCGCTGTGCAAGGTATCGCTGAACTGAtt             <  1:14718834/35‑1 (MQ=255)
                       tGAAAGGCGCTGTGCAAGGTATCGCTGAACTGAtt             <  1:20246918/35‑1 (MQ=255)
                        gAAAGGCGCTGTGCAAGGTATCGCTGAACTGATTa            <  1:386702/35‑1 (MQ=255)
                          aaGGCGCTGTGCAAGGTATCGCTGAACTGATTACt          <  1:7500365/35‑1 (MQ=255)
                          aaGGCGCTGTGCAAGGTATCGCTGAACTGATTACt          <  1:4238020/35‑1 (MQ=255)
                          aaGGCGCTGTGCAAGGTATCGCTGAACTGATTACt          <  1:17495944/35‑1 (MQ=255)
                          aaGGCGCTGTGCAAGGTATCGCTGAACTGATTACt          <  1:13802997/35‑1 (MQ=255)
                            ggCGCTGTGCAAGGTATCGCTGAACTGATTACTCg        <  1:1535573/35‑1 (MQ=255)
                            ggCGCTGTGCAAGGTATCGCTGAACTGATTACTCg        <  1:12752235/35‑1 (MQ=255)
                             gctctgggggcgggatcgcccgcgtaagatccgca       >  1:18304925‑M1/4‑6 (MQ=255)
                             gcgcTTTGCAAGGTATCGCTGAACTGATTACTCGt       >  1:10223304/1‑35 (MQ=255)
                             gcgcTGggggcgggatcgcccgcgtaagatccgca       <  1:7677803‑M1/35‑30 (MQ=255)
                             gcgcTGggggcgggatcgcccgcgtaagatccgca       >  1:3279647‑M1/1‑6 (MQ=255)
                             gcgcTGTGCAAGGTATCGCTGAACTGATTACTCGt       <  1:14078515/35‑1 (MQ=255)
                             gcgcTGTGCAAGGTATCGCTGAACTGATTACTCGt       >  1:11200153/1‑35 (MQ=255)
                             gcgcTGTGCAAGGTATCGCTGAACTGATTACTCGt       >  1:8992008/1‑35 (MQ=255)
                             gcgcTGTGCAAGGTATCGCTGAACTGATTACTCGt       <  1:10078017/35‑1 (MQ=255)
                              cgcTGggggcgggatcgcccgcgtaagatccgcaa      <  1:18173705‑M1/35‑31 (MQ=255)
                              cgcTGTGCAAGGTATCGCTGAACTGATTACTCGTc      <  1:12889584/35‑1 (MQ=255)
                              cgcTGTGCAAGGTATCGCTGAACTGATTACTCGTc      >  1:959710/1‑35 (MQ=255)
                              cgcTGTGCAAGGTATCGCTGAACTGATTACTCGTc      >  1:19339095/1‑35 (MQ=255)
                              cgcTGTGCAAGGTATCGCTGAACTGATTACTCGTc      <  1:14288206/35‑1 (MQ=255)
                              cgcTGTGCAAGGTATCGCTGAACTGATTACTCGTc      <  1:16303021/35‑1 (MQ=255)
                              cgcTGTGCAAGGTATCGCTGAACTGATTACTCGTc      <  1:16057955/35‑1 (MQ=255)
                               gcTGggggcgggatcgcccgcgtaagatccgcaat     <  1:8001207‑M1/35‑32 (MQ=255)
                               gcTGggggcgggatcgcccgcgtaagatccgcaat     >  1:16560695‑M1/1‑4 (MQ=255)
                               gcTGggggcgggatcgcccgcgtaagatccgcaat     <  1:7186990‑M1/35‑32 (MQ=255)
                               gcTGTGCAAGGTATCGCTGAACTGATTACTCGTcc     <  1:15187803/35‑1 (MQ=255)
                               gcTGTGCAAGGTATCGCTGAACTGATTACTCGTcc     <  1:19067553/35‑1 (MQ=255)
                                cggggggcgggatcgcccgcgtaagatccgcaatt    <  1:15032295‑M1/33‑33 (MQ=255)
                                cTGggggcgggatcgcccgcgtaagatccgcaatt    >  1:11096548‑M1/1‑3 (MQ=255)
                                cTGggggcgggatcgcccgcgtaagatccgcaatt    <  1:13886847‑M1/35‑33 (MQ=255)
                                cTGTGCAAGGTATCGCTGAACTGATTACTCGTCCg    >  1:17380709/1‑35 (MQ=255)
                                cTGTGCAAGGTATCGCTGAACTGATTACTCGTCCg    <  1:17704832/35‑1 (MQ=255)
                                cTGTGCAAGGTATCGCTGAACTGATTACTCGTCCg    >  1:10397467/1‑35 (MQ=255)
                                 tgtgCAAGGTATCTCTGAACTGATTACTCGTCCgg   >  1:11513194/1‑35 (MQ=255)
                                 tgtgCAAGGTATCGCTGAACTTATTACTCGTCCgg   >  1:123159/1‑35 (MQ=255)
                                 tgtgCAAGGTATCGCTGAACTGATTACTCGTCCgg   >  1:10897440/1‑35 (MQ=255)
                                 tGggggcgggatcgcccgcttaagatccgcaattt   >  1:844280‑M1/1‑2 (MQ=255)
                                 tGggggcgggatcgcccgcgtaagatccgcaattt   <  1:8587191‑M1/35‑34 (MQ=255)
                                 tGggggcgggatcgcccgcgtaagatccgcaattt   <  1:10270942‑M1/35‑34 (MQ=255)
                                  gtgCAAGGTATCGCTGAACTGATTACTCGTCCggg  >  1:5259873/1‑35 (MQ=255)
                                  gtgCAAGGTATCGCTGAACTGATTACTCGTCCggg  >  1:4147592/1‑35 (MQ=255)
                                  gggggcgggatcgcccgcgtaagatccgcaattta  >  1:9117598‑M1/1‑1 (MQ=255)
                                  gggggcgggatcgcccgcgtaagatccgcaattta  <  1:10158816‑M1/35‑35 (MQ=255)
                                  gggggcgggatcgcccgcgtaagatccgcaattta  >  1:3357108‑M1/1‑1 (MQ=255)
                                  |                                  
GTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTGTGCAAGGTATCGCTGAACTGATTACTCGTCCGGG  >  REL606/108651‑108719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.