New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 25693370 (0.680)10 (0.130) 4/36 NT 13.6% coding (70/399 nt) yafO predicted toxin of the YafO‑YafN toxin‑antitoxin system
?REL606 3944634 = 75 (0.970)intergenic (+23/‑124) proM/aslB tRNA‑Pro/predicted regulator of arylsulfatase activity

CTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGG‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/256894‑256933
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGTTTTTTGTTT  >  REL606/3944634‑3944645
                                                    
CTGCAACTTACAGCAGAGGAACTTGATGCGTTAAC                   >  1:10673882/1‑35
CTGCAACTTACAGCAGAGGAACTTGATGCGTTAAC                   <  1:18788389/35‑1
CTGCAACTTACAGCAGAGGAACTTGATGCGTTAAC                   >  1:18988212/1‑35
CTGCAACTTACAGCAGAGGAACTTGATGCGTTAAC                   >  1:5962656/1‑35
CTGCAACTTACAGCAGAGGAACTTGATGCGTTAAC                   >  1:5749920/1‑35
CTGCAACTTACAGCAGAGGAACTTGATGCGTTAAC                   <  1:20459545/35‑1
CTGCAACTTACAGCAGAGGAACTTGATGCGTTAAC                   >  1:331308/1‑35
 TGCAACTTACAGCAGAGGAACTTGATGCGTTAACG                  <  1:15638747/35‑1
 TGCAACTTACAGCAGAGGAACTTGATGCGTTAACG                  >  1:17813749/1‑35
 TGCAACTTACAGCAGAGGAACTTGATGCGTTAACG                  <  1:13791370/35‑1
 TGCAACTTACAGCAGAGGAACTTGATGCGTTAACG                  <  1:11670937/35‑1
 TGCAACTTACAGCAGAGGAACTTGATGCGTTAACG                  >  1:9180491/1‑35
  GCAACTTACAGCAGAGGAACTTGATGCGTTAACGN                 <  1:7294009/35‑1
  GCAACTTACAGCAGAGGAACTTGATGCGTTAACGG                 >  1:3784270/1‑35
  GCAACTTACAGCAGAGGAACTTGATGCGTTAACGG                 <  1:4098925/35‑1
  GCAACTTACAGCAGAGGAACTTGATGCGTTAACGG                 >  1:1915342/1‑35
  GCAACTTACAGCAGAGGAACTTGATGCGTTAACGG                 <  1:18843372/35‑1
  GCAACTTACAGCAGAGGAACTTGATGCGTTAACGG                 >  1:8840731/1‑35
  GCAACTTACAGCAGAGGAACTTGATGCGTTAACGG                 <  1:9550895/35‑1
  GCAACTTACAGCAGAGGAACTTGATGCGTTAACGG                 <  1:11695950/35‑1
  GCAACTTACAGCAGAGGAACTTGATGCGTTAACGG                 <  1:15303744/35‑1
  GCAACTTACAGCAGAGGAACTTGATGCGTTAACGG                 >  1:11027871/1‑35
  GCAACTTACAGCAGAGGAACTTGATGCGTTAACGG                 <  1:13338272/35‑1
  GCAACTTACAGCAGAGGAACTTGATGCGTTAACGG                 >  1:11144922/1‑35
  GCAACTTACAGCAGAGGAACTTGATGCATTAACGG                 <  1:5314228/35‑1
   CAACTTACAGCAGAGGAACTTGATGCGTTAACGGC                <  1:4752462/35‑1
   CAACTTACAGCAGAGGAACTTGATGCGTTAACGGC                <  1:6990857/35‑1
    AACTTACAGCAGAGGAACTTGATGCGTTAACGGCG               <  1:2950451/35‑1
    AACTTACAGCAGAGGAACTTGATGCGTTAACGGCG               >  1:19735271/1‑35
    AACTTACAGCAGAGGAACTTGATGCGTTAACGGCG               >  1:19031365/1‑35
     ACTTACAGCAGAGGAACTTGATGCGTTAACGGCGG              >  1:3528144/1‑35
     ACTTACAGCAGAGGAACTTGATGCGTTAACGGCGG              <  1:10972522/35‑1
      CTTACAGCAGAGGAACTTGATGCGTTAACGGCGGG             >  1:11014334/1‑35
      CTTACAGCAGAGGAACTTGATGCGTTAACGGCGGG             >  1:1733367/1‑35
       TTACAGCAGAGGAACTTGATGCGTTAACGGCGGGG            >  1:17323727/1‑35
        TACAGCAGAGGAACTTGATGCGTTAACGGCGGGtg           >  1:14175929/1‑33
        TACAGCAGAGGAACTTGATGCGTTAACGGCGGGGg           >  1:16868533/1‑34
        TACAGCAGAGGAACTTGATGCGTTAACGGCGGGGT           >  1:14243311/1‑35
        TACAGCAGAGGAACTTGATGCGTTAACGGCGGGGT           >  1:8387989/1‑35
        TACAGCAGAGGAACTTGATGCGTTAACGGCGGGGT           >  1:11247274/1‑35
         ACAGCAGAGGAACTTGATGCGTTAACGGCGGGTTT          >  1:2432520/1‑35
         ACAGCAGAGGAACTTGATGCGTTAACGGCGGGGgt          >  1:18990954/1‑33
         ACAGCAGAGGAACTTGATGCGTTAACGGCGGGGTT          >  1:6670627/1‑35
         ACAGCAGAGGAACTTGATGCGTTAACGGCGGGGTT          >  1:16325354/1‑35
         ACAGCAGAGGAACTTGATGCGTTAACGGCGGGGTT          >  1:18471802/1‑35
         ACAGCAGAGGAACTTGATGCGTTAACGGCGGGGTT          >  1:18485466/1‑35
         ACAGCAGAGGAACTTGATGCGTTAACGGCGGGGTT          >  1:3253677/1‑35
          CAGCAGAGGAACTTGATGCGTTAACGGCGGGGTTT         >  1:15257634/1‑35
          CAGCAGAGGAACTTGATGCGTTAACGGCGGGGGTT         >  1:312128/1‑35
           AGCAGAGGAACTTGATGCGTTAACGGCGGGGTTTa        >  1:3573601/1‑34
           AGCAGAGGAACTTGATGCGTTAACGGCGGGGTTTT        >  1:11951493/1‑35
           AGCAGAGGAACTTGATGCGTTAACGGCGGGGGTTa        >  1:2241996/1‑34
            GCAGAGGAACTTGATGCGTTAACGGCGGGGTTTTT       >  1:5866774/1‑35
            GCAGAGGAACTTGATGCGTTAACGGCGGGGGTTTT       >  1:18098828/1‑35
             CAGAGGAACTTGATGCGTTAACGGCGGGGTTTTTT      >  1:8028186/1‑35
              AGAGGAACTTGATGCGTTAACGGCGGGGTTTTTTt     >  1:3887386/1‑34
               GAGGAACTTGATGCGTTAACGGCGGGGTTTTTTtt    >  1:12517515/1‑33
               GAGGAACTTGATGCGTTAACGGCGGGGTTTTTTtt    >  1:14740925/1‑33
                AGGAACTTGATGCGTTAACGGCGGGGTTTTTTttc   >  1:6646934/1‑32
                AGGAACTTGATGCGTTAACGGCGGGGTTTTTTttc   >  1:19437575/1‑32
                 GGAACTTGATGCGTTAACGGCGGGGTTTTTTTTTT  >  1:12126449/1‑35
                                                    
CTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGG‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/256894‑256933
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggGGTTTTTTGTTT  >  REL606/3944634‑3944645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.