New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1286708 =97 (0.940)10 (0.120) 4/40 NT 12.7% intergenic (+32/‑151) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein
?REL606 = 4391784 57 (0.670)coding (602/1164 nt) yjfC predicted synthetase/amidase

ATAAAAAAACCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1286722‑1286708
‑‑‑‑‑‑‑‑‑‑‑ccgcGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTGCA  <  REL606/4391784‑4391751
                                                 
gtgAAAAAACCCCGCGACTCCTGCCCTGCCTGCTG                <  1:200466/32‑1
aggAAAAAACCCCGCGACTCCTGCCCTGCCTGCTG                <  1:7757426/32‑1
agAAAAAAACCCCGCGACTCCTGCCCTGCCTGCTG                <  1:5256519/33‑1
ATAAAAAAACCCCGCGACTCCTGCCCTGCCTGCTG                <  1:8681870/35‑1
ATAAAAAAACCCCGCGACTCCTGCCCTGCCTGCTG                <  1:17151065/35‑1
 agAAAAAACCCCGCGACTCCTGCCCTGCCTGCTGG               <  1:11033184/33‑1
 TAAAAAAACCCCGCGACTCCTGCCCTGCCTGCTGG               <  1:4449016/35‑1
  gAAAAAACCCCGCGACTCCTGCCCTGCCTGCTGGG              <  1:18821379/34‑1
   AAAACACCCCGCGACTCCTGCCCTGCCTGCTGGGC             <  1:8241798/35‑1
     AAAACCCCGCGACTCCTGCCCTGCCTGCTGGGCGC           <  1:15266931/35‑1
      aacCCCCGCGACTCCTGCCCTGCCTGCTGGGCGCA          <  1:7389424/32‑1
       acCCCCGCGACTCCTGCCCTGCCTGCTGGGCGCAG         <  1:2160901/33‑1
        ACCCCGCGACTCCTGCCCTGCCTGCTGGGCGCAGT        <  1:6735293/35‑1
        ACCCCGCGACTCCTGCCCTGCCTGCTGGGCGCAGT        <  1:5059445/35‑1
         CCCCGCGACTCCTGCCCTGCCTGCTGGGCGCAGTC       <  1:5877983/35‑1
           CCGCGACTCCTGCCCTGCCTGCTGGGCGCAGTCCT     <  1:1308334/35‑1
           CCGCGACTCCTGCCCTGCCTGCTGGGCGCAGTCCT     <  1:11202363/35‑1
           CCGCGACTCCTGCCCTGCCTGCTGGGCGCAGTCCT     <  1:19157392/35‑1
           CCGCGACTCCTGCCCTGCCTGCTGGGCGCAGTCCT     <  1:5331845/35‑1
            CGCGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTG    >  1:7317214/1‑35
            CGCGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTG    <  1:2245711/35‑1
            CGCGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTG    <  1:12648509/35‑1
            CGCGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTG    >  1:1664678/1‑35
            CGCGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTG    >  1:15139332/1‑35
            CGCGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTG    >  1:12858408/1‑35
             GCGCCTCCTGCCCTGCCTGCTGGGCGCAGTCCTGC   <  1:1440148/35‑1
             GCGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTGC   >  1:11765298/1‑35
             GCGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTGC   >  1:5584004/1‑35
             GCGACTCCTGCCCTGCCGGCTGGGCGCAGTCCTGC   >  1:6553372/1‑35
             GCGACGCCTGCCCTGCCTGCTGGGCGCAGTCCTGC   <  1:19440016/35‑1
              CGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTGCA  >  1:2422661/1‑35
              CGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTGCA  >  1:4189807/1‑35
              CGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTGCA  >  1:2090592/1‑35
              CGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTGCA  >  1:20364645/1‑35
              CGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTGCA  <  1:12023188/35‑1
              CGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTGCA  >  1:14597582/1‑35
                                                 
ATAAAAAAACCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1286722‑1286708
‑‑‑‑‑‑‑‑‑‑‑ccgcGACTCCTGCCCTGCCTGCTGGGCGCAGTCCTGCA  <  REL606/4391784‑4391751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.