New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 10617 =104 (1.010)21 (0.220) 7/44 NT 21.3% intergenic (‑125/+24) yaaH/yaaW conserved inner membrane protein associated with acetate transport/hypothetical protein
?REL606 = 3622975 60 (0.640)coding (1754/2619 nt) yhjO cellulose synthase, catalytic subunit

Only 100 of 160 total aligned reads displayed.

CACCGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCT  >  REL606/3622941‑3623009
                                  |                                   
cACCGTTTCGTAGATTTCACTCCAGAAAGAGTGGc                                     >  1:15161385/1‑35 (MQ=255)
cACCGTTTCGTAGATTTCACTCCAGAAAGAGTGGc                                     >  1:5531555/1‑35 (MQ=255)
 aCCGTTTCGTAGATTTCACTCCAGAAAGAGTGGCg                                    <  1:1686012‑M2/35‑2 (MQ=255)
 aCCGTTTCGTAGATTTCACTCCAGAAAGAGTGGCg                                    >  1:13306068‑M2/1‑34 (MQ=255)
 aCCGTTTCGTAGATTTCACTCCAGAAAGAGTGGCg                                    >  1:12525073‑M2/1‑34 (MQ=255)
 aCAGTTTCGTAGATTTCACTCCAGAAAGAGTGGCg                                    >  1:3263566‑M2/1‑34 (MQ=255)
  ccGTTTCGTAGATTTCACTCCAGAAAGAGTGGCga                                   >  1:6029163‑M2/1‑33 (MQ=255)
  ccGTTTCGTAGATTTCACTCCAGAAAGAGTGGCga                                   <  1:6662738‑M2/35‑3 (MQ=255)
   cGTTTCGTAGATTTCACTCCAGAAAGAGTGGCgaa                                  <  1:6391249‑M2/35‑4 (MQ=255)
   cGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGat                                 <  1:15753324/35‑1 (MQ=255)
   cGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGat                                 <  1:5559326/35‑1 (MQ=255)
   cGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGat                                 <  1:6919561/35‑1 (MQ=255)
    gTTTCGTAGATTTCACTCCAGAAAGAGTGGCgaaa                                 <  1:1731451‑M2/35‑5 (MQ=255)
    gTTTCGTAGATTTCACTCCAGAAAGAGTGGCgaaa                                 <  1:6130639‑M2/35‑5 (MQ=255)
    gTTTCGTAGATTTCACTCCAGAAAGAGTGGCGata                                <  1:19799532/35‑1 (MQ=255)
    gTTTCGTAGATTTCACTCCAGAAAGAGTGGCGata                                <  1:198845/35‑1 (MQ=255)
    gTTTCGTAGATTTCACTCCAGAAAGAGTGGCGata                                <  1:6699336/35‑1 (MQ=255)
    gTTTCGTAGATTTCACTCCAGAAAGAGAGGGGata                                >  1:333786/1‑35 (MQ=25)
     tttCGTAGATTTCACTCCAGAAAGAGTGGCgaaat                                <  1:20338110‑M2/35‑6 (MQ=255)
     tttCGTAGATTTCACTCCAGAAAGAGTGGCgaaaa                                <  1:3471007‑M2/35‑6 (MQ=255)
     tttCGTAGATTTCACTCCAGAAAGAGTGGCgaaaa                                <  1:2189055‑M2/35‑6 (MQ=255)
     tttCGTAGATTTCACTCCAGAAAGAGTGGCGatat                               <  1:10895796/35‑1 (MQ=255)
      ttCGTAGATTTCACTCCAGAAAGAGTGGCgaaaat                               <  1:16675147‑M2/35‑7 (MQ=255)
      ttCGTAGATTTCACTCCAGAAAGAGTGGCgaaaat                               <  1:16364700‑M2/35‑7 (MQ=255)
      ttCGTAGATTTCACTCCAGAAAGAGTGGCGATAtt                              <  1:4185882/35‑1 (MQ=255)
       tCGTAGATTTCACTCCAGAGAGAGTGGCGATAttt                             <  1:10431075/35‑1 (MQ=255)
       tCGTAGATTTCACTCCAGAAAGAGTGGCgaaattt                              <  1:4602214‑M2/35‑8 (MQ=255)
       tCGTAGATTTCACTCCAGAAAGAGTGGCgaaaatt                              <  1:3289514‑M2/35‑8 (MQ=255)
       tCGTAGATTTCACTCCAGAAAGAGTGGCGATAttt                             <  1:8520398/35‑1 (MQ=255)
       tCGTAGATTTCACTCCAGAAAGAGTGGCGATAttt                             <  1:18254612/35‑1 (MQ=255)
        cGTAGATTTCGCTCGAGAAAGAGTGGCGATATTTg                            <  1:20585611/35‑1 (MQ=37)
        cGTAGATTTCACTCCAGAAATAGTGGCgaaaattt                             <  1:5448265‑M2/35‑9 (MQ=255)
        cGTAGATTTCACTCCAGAAAGAGTGGCgaaatttt                             <  1:1475611‑M2/35‑9 (MQ=255)
        cGTAGATTTCACTCCAGAAAGAGTGGCgaaaattt                             <  1:942644‑M2/35‑9 (MQ=255)
        cGTAGATTTCACTCCAGAAAGAGTGGCgaaaattt                             <  1:7923782‑M2/35‑9 (MQ=255)
        cGTAGATTTCACTCCAGAAAGAGTGGCgaaaatta                             <  1:15618902‑M2/35‑9 (MQ=255)
        cGTAGATTTCACTCCAGAAAGAGTGGCgaaaaatt                             <  1:4953566‑M2/35‑9 (MQ=255)
        cGTAGATTTCACTCCAGAAAGAGTGGCGATATTTg                            <  1:7363224/35‑1 (MQ=255)
         gTAGATTTCACTCCAGAAAGAGTGGCgaaaatttt                            <  1:18612228‑M2/35‑10 (MQ=255)
         gTAGATTTCACTCCAGAAAGAGTGGCGATATTTGc                           <  1:6129453/35‑1 (MQ=255)
          tAGATTTCACTCCAGAAAGAGTGGCGATATTTGcc                          <  1:8450753/35‑1 (MQ=255)
          tAGATTTCACTCCAGAAAGAGTGGCGAAACTTgtc                          >  1:17824461/1‑33 (MQ=25)
           aGATTTCACTCCAGAAAGAGTGGCGATATTTGccc                         <  1:4869134/35‑1 (MQ=255)
           aGATTTCACTCCAGAAAGAGTGGCGAAAAATGccc                         >  1:15604494/1‑35 (MQ=25)
            gATTTCACTCCATAAAGAGTGGCGAAAATTTCCCt                        >  1:18696466/1‑35 (MQ=16)
            gATTTCACTCCAGAAAGAGTGGCgaaaattttccc                         <  1:17051944‑M2/35‑13 (MQ=255)
            gATTTCACTCCAGAAAGAGTGGCGATATTTGCCCt                        <  1:12964702/35‑1 (MQ=255)
            gATTTCACTCCAGAAAGAGTGGCGATATTTGCCCt                        <  1:3668381/35‑1 (MQ=255)
            gATTTCACTCCAGAAAGAGTGGCGATATTTGCCCt                        <  1:6993105/35‑1 (MQ=255)
            gATTTCACTCAAGAAAGAGTGGCGATATTTGCCCt                        <  1:11373528/35‑1 (MQ=255)
             aTTTCACTCCAGAAAGAGTGGCgaaaattttccct                        <  1:5092523‑M2/35‑14 (MQ=255)
             aTTTCACTCCAGAAAGAGTGGCGATATTTGCCCTg                       <  1:15992563/35‑1 (MQ=255)
              tttCACTCCAGAAAGAGTGGCgaaaaatttccccg                       <  1:13651601‑M2/35‑15 (MQ=255)
              tttCACTCCAGAAAGAGTGGCGATATTTGCCCTgg                      <  1:1110765/35‑1 (MQ=255)
              tttCACTCCAGAAAGAGTGGCGATATTTGCCCTgg                      <  1:7467936/35‑1 (MQ=255)
               ttCACTCCAGAAAGAGTGGCgaaaattttccccgg                      <  1:7508146‑M2/35‑16 (MQ=255)
               ttCACTCCAGAAAGAGTGGCGAAAATTTCCCCTga                      >  1:8757662/1‑34 (MQ=12)
               ttCACTCCAGAAAGAGTGGCGATATTTGCCCTGGa                     <  1:1429012/35‑1 (MQ=255)
                tCACTCCAGAAAGAGTGGCGATATTTGCCCTGGAt                    <  1:9761406/35‑1 (MQ=255)
                tCACTCCAGAAAGAGTGGCGATATTTGCCCTGGAt                    <  1:12581099/35‑1 (MQ=255)
                tCACTCCAGAAAGAGTGGCGATATTTGCCCTGGAt                    <  1:17859817/35‑1 (MQ=255)
                tCACTCCAGAAAGAGTGGCGATATTTGCCCAGGAt                    <  1:9009198/35‑1 (MQ=255)
                tCACTCCAGAAAGAGTGGCGAAAATTTTCCTgggt                    >  1:10982974/1‑33 (MQ=12)
                 cACTCCAGAAAGAGTGGCGATATTTGCCCTGGATn                   <  1:5923234/35‑1 (MQ=255)
                 cACTCCAGAAAGAGTGGCGATATTTGCCCTGGATc                   <  1:18906409/35‑1 (MQ=255)
                   cTCCAGAAAGAGTGGCGATATTTGCCCTGGATCtt                 <  1:12480107/35‑1 (MQ=255)
                   cTCCAGAAAGAGTGGCGATATTTGCCCTGGATCtt                 <  1:19465311/35‑1 (MQ=255)
                   cTCCAGAAAGAGTGGCGATATTTGCCCTGGATCtt                 <  1:19404823/35‑1 (MQ=255)
                    tCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTg                <  1:10008840/35‑1 (MQ=255)
                    tCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTg                <  1:1348536/35‑1 (MQ=255)
                    tCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTg                <  1:8052518/35‑1 (MQ=255)
                     ccAGAAAGAGTGGCGATATTTGCCCTGGATCTTgg               <  1:9043436/35‑1 (MQ=255)
                     ccAGAAAGAGTGGCGATATTTGCCCTGGATCTTgg               <  1:17233681/35‑1 (MQ=255)
                       aGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAg             <  1:12144817/35‑1 (MQ=255)
                         aaaGAGTGGCGATATTTGCCCTGGATCTTGGAGtt           <  1:4416807/35‑1 (MQ=255)
                          aaGAGTTGCGATATTTGCCCTGGATCTTGGAGTTg          >  1:20062632/1‑35 (MQ=255)
                          aaGAGTGGCGATATTTGCCCTGGATCTTGGAGTTg          <  1:8658466/35‑1 (MQ=255)
                          aaGAGTGGCGATATTTGCCCTGGATCTTGGAGTTg          <  1:12608897/35‑1 (MQ=255)
                           agagTTGCGATATTTGCCCTGGATCTTGGAGTTgg         >  1:11328048/1‑35 (MQ=255)
                             agTGGCGATATTTGCCCTGGATCTTGGAGTTGGTc       <  1:580981/35‑1 (MQ=255)
                             agTGGCGATATTTGCCCTGGATCTTGGAGTTGGTc       <  1:20178404/35‑1 (MQ=255)
                              gTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCa      <  1:16419103/35‑1 (MQ=255)
                              gTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCa      <  1:1773516/35‑1 (MQ=255)
                              gTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCa      <  1:8624305/35‑1 (MQ=255)
                              gTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCa      <  1:9243076/35‑1 (MQ=255)
                               tGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAg     <  1:15923261/35‑1 (MQ=255)
                               tGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAg     <  1:1742532/35‑1 (MQ=255)
                               tGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAg     >  1:4519680/1‑35 (MQ=255)
                                ggCGATATTTGCCCTGGATCTTGGAGTTGGTCAgg    <  1:13639886/35‑1 (MQ=255)
                                ggCGATATTTGCCCTGGATCTTGGAGTTGGTCAgg    >  1:14997985/1‑35 (MQ=255)
                                ggCGATATTTGCCCTGGATCTTGGAGTTGGTCAgg    <  1:1512844/35‑1 (MQ=255)
                                ggCGATATTTGCCCTGGATCTTGGAGTTGGTCAgg    <  1:3895636/35‑1 (MQ=255)
                                ggCGATATTTGCCCTGGATCTTGGAGTTGGTCAgg    <  1:20498347/35‑1 (MQ=255)
                                 gCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGc   <  1:14433411/35‑1 (MQ=255)
                                 gCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGc   <  1:15497160/35‑1 (MQ=255)
                                  cGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCt  >  1:7945907/1‑35 (MQ=255)
                                  cGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCt  <  1:15064616/35‑1 (MQ=255)
                                  cGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCt  <  1:4804987/35‑1 (MQ=255)
                                  cGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCt  <  1:10901813/35‑1 (MQ=255)
                                  cGATATTTGCCCTGGATCTTGGAGTTGGCCAGGCt  >  1:11038575/1‑35 (MQ=255)
                                  |                                   
CACCGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCT  >  REL606/3622941‑3623009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.