New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1544434 = | 52 (0.510) | 6 (0.060) | 4/46 | NT | 10.0% | coding (7/1536 nt) | xasA | predicted glutamate:gamma‑aminobutyric acid antiporter |
? | REL606 | = 2047872 | 58 (0.590) | coding (1256/1395 nt) | wcaM | predicted colanic acid biosynthesis protein |
GACAGGAATACCGTTTTAGGGGGATAATATGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1544468‑1544434 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA < REL606/2047872‑2047839 GACAGGAATACCGTTTTAGGGTGATAATATGGCTA > 1:14637318/1‑35 GACAGGAATACCGTTTTAGGGTGATAATATGGCTA > 1:16836517/1‑35 GACAGGAATACCGTTTTAGGGGGATAATATGGCTA > 1:7950048/1‑35 GACAGGAATACCGTTTTAGGGGGATAATATGGCTA > 1:6259154/1‑35 GACAGGAATACCGTTTTAGGGGGATAATATGGCTA > 1:4901005/1‑35 GACAGGAATACCGTTTTAGGGGGATAATATGGCTA > 1:13599226/1‑35 GACAGGAATACCGTTTTAGGGGGATAATATGGCTA > 1:14680106/1‑35 CAGGAATACCGTTTTAGGGGGATAATATGGCTAAA > 1:7324920/1‑35 AGGAATACCGTTTTAGGGGGATAATATGGCTAAAA > 1:14180048/1‑35 GGAATACCGTTTTAGGGGGATAATATGGCTAAAAc > 1:18057194/1‑34 GGAATACCGTTTTAGGGGGATAATATGGCTAAAAA > 1:2178936/1‑35 GAATACCGTTTTAGGGGGATAATATGGCTAAAAca > 1:16183324/1‑33 GAATACCGTTTTAGGGGGATAATATGGCTAAAAca > 1:19918918/1‑33 GAATACCGTTTTAGGGGGATAATATGGCTAAAAca > 1:13186541/1‑33 AATACCGTTTTAGGGGGATAATATGGCTAAAAAAG > 1:20066751/1‑35 ATACCGTTTTAGGGGGATAATATGGCTAAAACAGA > 1:2886619/1‑35 TACCGTTTTAGGGGGATAATATGGCTAAAAAAGAA > 1:3621773/1‑35 ACCGTTTTTGGGGGATAATATGGCTAAAAAAGAAA > 1:4786350/1‑35 ACCGTTTTAGGGGGATAATATGGCTAAAACAGAAc > 1:15152720/1‑34 ACCGTTTTAGGGGGATAATATGGCTAAAAAAGAAc > 1:15838269/1‑34 AAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA < 1:19404331/35‑1 AAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA > 1:3672904/1‑35 AAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA < 1:13271622/35‑1 AAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA > 1:13090731/1‑35 AAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA > 1:10124884/1‑35 GACAGGAATACCGTTTTAGGGGGATAATATGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1544468‑1544434 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAAAAGAAACACTGCTGTCTCTTGCAAATGTTCA < REL606/2047872‑2047839 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |