New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 462517 =55 (0.540)11 (0.120) 4/42 NT 17.3% coding (363/528 nt) priC primosomal replication protein N''
?REL606 1306336 = 57 (0.630)intergenic (‑97/+274) cls/kch cardiolipin synthetase/voltage‑gated potassium channel

Only 100 of 121 total aligned reads displayed.

GACGGGCTCTGCGTTCGGCAACCATCTCACGTAGCCGCCGCTCAAAATCCTGATGCTGAATACGTTTAC  >  REL606/462483‑462551
                                  |                                  
gACGGGCTCTGCGTTCGGCAACCATCTCATGTAgc                                    >  1:16333251/1‑35 (MQ=255)
gACGGGCTCTGCGTTCGGCAACCATCTCATGTAgc                                    >  1:11733163/1‑35 (MQ=255)
gACGGGCTCTGCGTTCGGCAACCATCTCACGTAgc                                    >  1:8628879/1‑35 (MQ=255)
gACGGGCTCTGCGTTCGGCAACCATCTCACGTAgc                                    >  1:4137314/1‑35 (MQ=255)
gACGGGCTCTGCGTTCGGCAACCATCTCACGTAgc                                    >  1:16306664/1‑35 (MQ=255)
gACGGGCTCTGCGTTCGGCAACCATCTCACGTAgc                                    <  1:14991206/35‑1 (MQ=255)
gACGGGCTCTGCGTTCGGCAACCATCTCACGTAgc                                    >  1:14437187/1‑35 (MQ=255)
gACGGGCTCTGCGTTCGGCAACAATCTCACGTAgc                                    <  1:10465032/35‑1 (MQ=255)
 aCGGGCTCTGCGTTCGGCAACCATCTCACGTAgcc                                   <  1:9190738/35‑1 (MQ=255)
 aCGGGCTCTGCGTTCGGCAACCATCTCACGTAgcc                                   <  1:14143875/35‑1 (MQ=255)
 aCGGGCTCTGCGTTCGGCAACCATCTCACGCAgcc                                   >  1:18777672/1‑35 (MQ=255)
  cGGGCTCTGCGTTCGGCAACCATCTCACGTAgccg                                  >  1:18294283/1‑35 (MQ=255)
  cGGGCTCTGCGTTCGGCAACCATCTCACGTAgccg                                  >  1:10218932/1‑35 (MQ=255)
  cGGGCTCTGCGTTCGGCAACCATCTCACGTAgccg                                  >  1:11138795/1‑35 (MQ=255)
   gggCTCTGCGTTCGGCAACCATCTCACGTAgccgc                                 >  1:2455678/1‑35 (MQ=255)
   gggCTCTGCGTTCGGCAACCATCTCACGTAgccgc                                 >  1:20289500/1‑35 (MQ=255)
   gggCTCTGCGTTCGGCAACCATCTCACGTAgccga                                 >  1:19812573/1‑34 (MQ=255)
    ggCTCTGCGTTCGGCAACCATCTCACGTAgccgcc                                >  1:12262163/1‑35 (MQ=255)
    ggCTCTGCGTTCGGCAACCATCTCACGTAgccgcc                                >  1:10923024/1‑35 (MQ=255)
    ggCTCTGCGTTCGGCAACCATCTCACGTAgccgcc                                >  1:2290487/1‑35 (MQ=255)
     gCTCTGCGTTCGGCAACCATCTCACGTAGccgccg                               >  1:1392165/1‑35 (MQ=255)
     ataacagaatggtcattataaccccgcccccgccg                               <  1:12017805‑M1/6‑1 (MQ=255)
      ctctGCGTTCGGCAACCATCTCACGTAgccgccac                              >  1:12088316/1‑33 (MQ=255)
       tctGCGTTCGGCAACCATCTCACGTAGCCGCCGCt                             >  1:1589270/1‑35 (MQ=255)
       tctGCGTTCGGCAACCATCTCACGTAGCCGCCGCt                             >  1:6723811/1‑35 (MQ=255)
       tctGCGTTCGGCAACCATCTCACGTAGCCGCCGCt                             >  1:12663821/1‑35 (MQ=255)
        ctGCGTTCGGCAACCATCTCACGTAGCCGCCGCTc                            >  1:19837572/1‑35 (MQ=255)
        ctGCGTTCGGCAACCATCTCACGTAGCCGCCGCTc                            >  1:2341782/1‑35 (MQ=255)
        ctGCGTTCGGCAACCATCTCACGTAGCCGCCGCTc                            >  1:2747119/1‑35 (MQ=255)
          gCGTTCGGCAACCATCTCACGTAGCCGCCGCTcca                          >  1:1165108/1‑33 (MQ=255)
          gCGTTCGGCAACCATCTCACGTAGCCGCCGCTCaa                          >  1:17506263/1‑35 (MQ=255)
            gTTCGGCAACCATCTCACGTAGCCGCCGCTCaaaa                        >  1:2164518/1‑35 (MQ=255)
            gTTCGGCAACCATCTCACGTAGCCGCCGCTCaaaa                        >  1:2149852/1‑35 (MQ=255)
            gTTCGGCAACCATCTCACGTAGCCGCCGCTCaaaa                        >  1:2983731/1‑35 (MQ=255)
            gTTCGGCAACCATCTCACGTAGCCGCCGCTCaaaa                        >  1:6574620/1‑35 (MQ=255)
            gTTCGGCAACCATCTCACGTAGCCGCCGCTCaaaa                        >  1:730911/1‑35 (MQ=255)
             ttCGGCAACCATCTCACGTAGCCGCCGCTCAAAAt                       >  1:13600891/1‑35 (MQ=255)
             ttCGGCAACCATCTCACGTAGCCGCCGCTCAAAAt                       >  1:10219804/1‑35 (MQ=255)
               cGGCAACCATCTCACGTAGCCGCCGCTCAAAATcc                     >  1:2404453/1‑35 (MQ=255)
               cGGCAACCATCTCACGTAGCCGCCGCTCAAAATcc                     >  1:16905279/1‑35 (MQ=255)
               cGGCAACCATCTCACGTAGCCGCCGCTCAAAATcc                     >  1:10341583/1‑35 (MQ=255)
               cGGCAACCATCTCACGTAGCCGCCGCTCAAAATcc                     >  1:14790308/1‑35 (MQ=255)
                ggCAACCATCTCACGTAGCCGCCGCTCAAAATCCt                    >  1:10965513/1‑35 (MQ=255)
                ggCAACCATCTCACGTAGCCGCCGCTCAAAATCCt                    >  1:15364511/1‑35 (MQ=255)
                ggCAACCATCTCACGTAGCCGCCGCTCAAAATCCt                    >  1:15458929/1‑35 (MQ=255)
                ggCAACCATCTCACGTAGCCGCCGCTCAAAATCCt                    >  1:15965995/1‑35 (MQ=255)
                ggCAACCATCTCACGTAGCCGCCGCTCAAAATCCt                    >  1:12894653/1‑35 (MQ=255)
                   aaCCATCTCACGTAGCCGCCGCTCAAAATCCTGAt                 >  1:9174463/1‑35 (MQ=255)
                   aaCCATCTCACGTAGCCGCCGCTCAAAATCCTGAt                 >  1:16665827/1‑35 (MQ=255)
                   aaCCATCTCACGTAGCCGCCGCTCAAAATCCTGAt                 >  1:12728765/1‑35 (MQ=255)
                    aCCATCTCACGTAGCCGCCGCTCAAAATCCTGATg                >  1:113059/1‑35 (MQ=255)
                     ccATCTCACGTAGCCGCCGCTCAAAATCCTGATGc               >  1:8982065/1‑35 (MQ=255)
                      cATCTCACGTAGCCGCCGCTCAAAATCCTGATGCt              >  1:14065751/1‑35 (MQ=255)
                      cATCTCACGTAGCCGCCGCTCAAAATCCTGATGCt              >  1:14213753/1‑35 (MQ=255)
                      cATCTCACGTAGCCGCCGCTCAAAATCCTGATGCt              >  1:765364/1‑35 (MQ=255)
                      cATCTCACGTAGCCGCCGCTCAAAATCCTGATGCt              >  1:8841636/1‑35 (MQ=255)
                       aTCTCACGTAGCCGCCGCTCAAAATCCTGATGCTg             >  1:5534191/1‑35 (MQ=255)
                        tctcACGTAGCCGCCGCTCAAAATCCTGATGCTGa            >  1:17611076/1‑35 (MQ=255)
                        tcccccgcccCCGCCGCTCAAAATCCTGATGCTGa            >  1:8871800‑M1/11‑35 (MQ=255)
                        tcccccccccCCGCCGCTCAAAATCCTGATGCTGa            >  1:3438533‑M1/11‑35 (MQ=255)
                         ctcACGTAGCCGCCGCTCAAAATCCTGATGCTGaa           >  1:6195090/1‑35 (MQ=255)
                         ctcACGTAGCCGCCGCTCAAAATCCTGATGCTGaa           >  1:7371824/1‑35 (MQ=255)
                         cccccgcccCCGCCGCTCAAAATCCTGATGCTGaa           >  1:7863980‑M1/10‑35 (MQ=255)
                         cccccccccCCGCCGCTCAAAATCCTGATGCTGaa           >  1:2714542‑M1/10‑35 (MQ=255)
                          tcACGTAGCCGCCGCTCAAAATCCTGATGCTGAAt          >  1:19716301/1‑35 (MQ=255)
                          ccccgcccCCGCCGCTCAAAATCCTGATGCTGAAt          >  1:2793682‑M1/9‑35 (MQ=255)
                          ccccgcccCCGCCGCTCAAAATCCTGATGCTGAAt          >  1:9474490‑M1/9‑35 (MQ=255)
                           cACGTGGCCGCCGCTCAAAATCCTGATGCTGAATa         <  1:18900951/35‑1 (MQ=255)
                           cACGTAGCCGCCGCTCAAAATCCTGATGCTGAATa         >  1:15301708/1‑35 (MQ=255)
                           cACGTAGCCGCCGCTCAAAATCCTGATGCTGAATa         >  1:16010320/1‑35 (MQ=255)
                           cACGTAGCCGCCGCTCAAAATCCTGATGCTGAATa         >  1:17980785/1‑35 (MQ=255)
                            ccgtccCCGCCGCTCAAAATCCTGATGCTGAATAc        >  1:14868059‑M1/7‑35 (MQ=255)
                            ccccccCCGCCGCTCAAAATCCTGATGCTGAATAc        >  1:13033854‑M1/7‑35 (MQ=255)
                            aCGTAGCCGCCGCTCAAAATCCTGATGCTGAATAc        >  1:928000/1‑35 (MQ=255)
                            aCGTAGCCGCCGCTCAAAATCCTGATGCTGAATAc        >  1:4206999/1‑35 (MQ=255)
                            aCGTAGCCGCCGCTCAAAATCCTGATGCTGAATAc        >  1:5601989/1‑35 (MQ=255)
                             gtgccCCGCCGCTCAAAATCCTGATGCTGAATACg       >  1:4482473‑M1/6‑35 (MQ=255)
                             cgtccCCGCCGCTCAAAATCCTGATGCTGAATACg       >  1:17459896‑M1/6‑35 (MQ=255)
                              gtacCCGCCGCTCAAAATCCTGATGCTGAATACGt      >  1:849742‑M1/5‑35 (MQ=255)
                              gcggccgccGCTCAAAATCCTGATGCTGAATACGt      <  1:14510747/32‑1 (MQ=255)
                              gcccCCGCCGCTCAAAATCCTGATGCTGAATACGt      >  1:4601477‑M1/5‑35 (MQ=255)
                              gTAGCCGCCGCTCAAAATCCTGATGCTGAATACGt      >  1:11196298/1‑35 (MQ=255)
                              gTAGCCGCCGCTCAAAATCCTGATGCTGAATACGt      >  1:15997735/1‑35 (MQ=255)
                              gTAGCCGCCGCTCAAAATCCTGATGCTGAATACGt      >  1:16454661/1‑35 (MQ=255)
                              gTAGCCGCCACTCAAAATCCTGATGCTGAATACGt      >  1:3880184/1‑35 (MQ=255)
                               tccCCGCCGCTCAAAATCCTGATGCTGAATACGtt     >  1:19625245‑M1/4‑35 (MQ=255)
                               tAGCCGCCGCTCAAAATCCTGATGCTGAATACGtt     >  1:7660347/1‑35 (MQ=255)
                               tAGCCGCCGCTCAAAATCCTGATGCTGAATACGtt     >  1:2968061/1‑35 (MQ=255)
                               cccCCGCCGCTCAAAATCCTGATGCTGAATACGtt     >  1:18008319‑M1/4‑35 (MQ=255)
                                ccCCGCCGCTCAAAATCCTGATGCTGAATACGttt    >  1:343702‑M1/3‑35 (MQ=255)
                                aGCCGCCGCTCAAAATCCTGATGCTGAATACGttt    >  1:2039523/1‑35 (MQ=255)
                                aGCCGCCGCTCAAAATCCTGATGCTGAATACGttt    >  1:161703/1‑35 (MQ=255)
                                 gccgccGCTCAAAATCCTGATGCTGAATACGTTTa   >  1:16365884/1‑35 (MQ=255)
                                 gccgccGCTCAAAATCCTGATGCTGAATACGTTTa   >  1:4495807/1‑35 (MQ=255)
                                 gccgccGCTCAAAATCCTGATGCTGAATACGTTTa   >  1:4404550/1‑35 (MQ=255)
                                 gccgccGCTCAAAATCCTGATGCTGAATACGTTTa   >  1:1030913/1‑35 (MQ=255)
                                 cCCGCCGCTCAAAATCCTGATGCTGAATACGTTTa   >  1:19165909‑M1/2‑35 (MQ=255)
                                 cCCGCCGCTCAAAATCCTGATGCTGAATACGTTTa   >  1:244715‑M1/2‑35 (MQ=255)
                                  CCGCCGCTCAAAATCCTGATGCTGAATACGTTTAc  >  1:1383098‑M1/1‑35 (MQ=255)
                                  CCGCCGCTCAAAATCCTGATGCTGAATACGTTTAc  <  1:1153317‑M1/35‑1 (MQ=255)
                                  |                                  
GACGGGCTCTGCGTTCGGCAACCATCTCACGTAGCCGCCGCTCAAAATCCTGATGCTGAATACGTTTAC  >  REL606/462483‑462551

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.