New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 10868572 (0.700)24 (0.310) 8/36 NT 29.3% coding (577/1152 nt) ftsZ cell division protein FtsZ
?REL606 = 2243652 62 (0.800)coding (1242/1944 nt) ccmF heme lyase, CcmF subunit

Only 100 of 107 total aligned reads displayed.

GATGCGTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/108646‑108685
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgGGGGCGGGATCGCCCGCGTAAGATCCGCAATTTA  <  REL606/2243652‑2243619
                                                                          
GATGCGTTTGGCGCAGCGAACGCTGTACTGAAAGG                                         >  1:8427398/1‑35
GATGCGTTTGGCGCAGCGAACGATGTACTGAAAGG                                         <  1:14874963/35‑1
GATGCGTTTGGCGCAGCGAACGATGTACTGAAAGG                                         <  1:1396152/35‑1
 ATGCGTTTGGCGCAGCGAACGATGTACTGAAAGGC                                        <  1:7783416/35‑1
 ATGCGTTTGGCGCAGCGAACGATGTACTGAAAGGC                                        <  1:5881512/35‑1
 ATGCGTTTGGCGCAGCGAACGATGTACTGAAAGGC                                        >  1:5369834/1‑35
 ATGCGTTTGGCGCAGCGAACGATGTACTGAAAGGC                                        <  1:5252888/35‑1
 ATGCGTTTGGCGCAGCGAACGATGTACTGAAAGGC                                        <  1:4700263/35‑1
 ATGCGTTTGGCGCAGCGAACGATGTACTGAAAGGC                                        <  1:2948207/35‑1
 ATGCGTTTGGCGCAGCGAACGATGTACTGAAAGGC                                        >  1:16932206/1‑35
  TGCGTTTGGCGCAGCGAACGATGTACTGAAAGGCG                                       <  1:9955973/35‑1
  TGCGTTTGGCGCAGCGAACGATGTACTGAAAGGCG                                       <  1:1314371/35‑1
   GCGTTTGGCGCAGCGAACGATGTACTGAAAGGCGC                                      >  1:2926739/1‑35
    CGTTTGGCGCAGCGAACGATGTACTGAAAGGCGCT                                     <  1:9955014/35‑1
    CGTTTGGCGCAGCGAACGATGTACTGAAAGGCGCT                                     <  1:11802191/35‑1
    CGTTTGGCGCAGCGAACGATGTACTGAAAGGCGCT                                     >  1:5281831/1‑35
    CGTTTGGCGCAGCGAACGATGTACTGAAAGGCGCT                                     <  1:19373197/35‑1
    CGTTTGGCGCAGCGAACGATGTACTGAAAGGCGCT                                     >  1:17350589/1‑35
    CGTTTGGCGCAGCGAACGATGTACTGAAAGGCGCT                                     <  1:738688/35‑1
    CGTTTGGCGCAGCGAACGAGGTACTGAAAGGCGCT                                     >  1:3889433/1‑35
    CGTTTGGCGAAGCGAACGATGTACTGAAAGGCGCT                                     <  1:5752940/35‑1
     GTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    >  1:18514854/1‑35
     GTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    >  1:5441365/1‑35
     GTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    <  1:5584719/35‑1
     GTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    >  1:17386199/1‑35
     GTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    <  1:17292619/35‑1
     GTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    <  1:20338407/35‑1
     GTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    >  1:7776829/1‑35
     GTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    >  1:2299055/1‑35
     GTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    <  1:15875151/35‑1
     GTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG                                    >  1:925572/1‑35
     GTTTGGCGCAGCGAACGATGTAATGAAAGGCGCTG                                    >  1:1628508/1‑35
      TTTGGCGCAGCGAACGATGTACTGAAAGGCGCTGG                                   >  1:20211744/1‑35
      TTTGGCGCAGCGAACGATGTACTGAAAGGCGCTGG                                   >  1:9775802/1‑35
      TTTGGCGCAGCGAACGATGTACTGAAAGGCGCTGG                                   >  1:19954661/1‑35
      TTTGGCGCAGCGAACGATGTACTGAAAGGCGCTGG                                   >  1:11090270/1‑35
       TTGGCGCAGCGAACGATGTACTGAAAGGCGCTGGG                                  >  1:16773438/1‑35
       TTGGCGCAGCGAACGATGTACTGAAAGGCGCTGGG                                  >  1:6464542/1‑35
        TGGCTCAGCGAACGATGTACTGAAAGGCGCTGGGG                                 >  1:3187120/1‑35
        TGGCGCAGCGAACGATGTACTGAAAGGCGCTGGGG                                 >  1:1877703/1‑35
         GGCGCAGCGAACGATGTACTGAAAGGCGCTGGGGG                                >  1:974305/1‑35
         GGCGCAGCGAACGATGTACTGAAAGGCGCTGGGGG                                >  1:1188925/1‑35
          GCGCAGCGAACGATGTACTGAAAGGCGCTGGGGGa                               >  1:17655069/1‑34
          GCGCAGCGAACGATGTACTGAAAGGCGCTGGGGGa                               >  1:4269310/1‑34
           CGCAGCGAACGATGTACTGAAAGGCGCTGGGGGgg                              >  1:9279756/1‑33
           CGCAGCGAACGATGTACTGAAAGGCGCTGGGGGgg                              >  1:12273086/1‑33
           CGCAGCGAACGATGTACTGAAAGGCGCTGGGGGag                              >  1:6519085/1‑33
            GCAGCGAACGATGTACTGAAAGGCGCTGGGGGGGG                             >  1:15605818/1‑35
            GCAGCGAACGATGTACTGAAAGGCGCTGGGGGAGG                             >  1:5306946/1‑35
            GCAGCGAACGATGTACTGAAAGGCGCTGGGGGAGG                             >  1:8357909/1‑35
             CAGCGAACGATGTACTGAAAGGCGCTGGGGGGGGG                            >  1:12008510/1‑35
             CAGCGAACGATGTACTGAAAGGCGCTGGGGGGGGG                            >  1:14842749/1‑35
             CAGCGAACGATGTACTGAAAGGCGCTGGGGGAGGG                            >  1:5440666/1‑35
             CAGCGAACGATGTACTGAAAGGCGCTGGGGGAGGG                            >  1:14355719/1‑35
             CAGCGAACGATGTACTGAAAGGCGCTGGGGGAGGG                            >  1:3994694/1‑35
              AGCGAACGATGTACTGAAAGGCGCTGGGGGGGGGA                           >  1:4766888/1‑35
              AGCGAACGATGTACTGAAAGGCGCTGGGGGGGGGA                           >  1:12147995/1‑35
              AGCGAACGATGTACTGAAAGGCGCTGGGGGAGGGg                           >  1:4635031/1‑34
              AGCGAACGATGTACTGAAAGGCGCTGGGGGAGGGg                           >  1:236580/1‑34
               GCGAACGATGTACTGAAAGGCGCTGGGGGCGGGcg                          >  1:154525/1‑33
               GCGAACGATGTACTGAAAGGCGCTGGGGGAGGGAT                          >  1:16215945/1‑35
               GCGAACGATGTACTGAAAGGCGCTGGGGGAGGGAT                          >  1:8106939/1‑35
               GCGAACGATGTACTGAAAGGCGCTGGGGGAGGGAT                          >  1:15995297/1‑35
               GCGAACGATGTACTGAAAGGCGCTGGGGGAGGGAT                          >  1:8685535/1‑35
               GCGAACGATGTACTGAAAGGCGCTGGGGGAGGGAT                          >  1:9061902/1‑35
                CGAACGATGTACTGAAAGGCGCTGGGGGAGGGATC                         >  1:3287380/1‑35
                 GAACGATGTACTGAAAGGCGCTGGGGGAGGGATCG                        >  1:10010171/1‑35
                  AACGATGTACTGAAAGGCGCTGGGGGAGGGATCGC                       >  1:17420108/1‑35
                   ACGATGTACTGAAAGGCGCTGGGGGAGGGATCGCt                      >  1:11808550/1‑34
                   ACGATGTACTGAAAGGCGCTGGGGGAGGGATCGCC                      >  1:20104923/1‑35
                                  gctCTGGGGGCGGGATCGCCCGCGTAAGATCCGCA       >  1:18304925/4‑35
                                  GCGCTGGGGGCGGGATCGCCCGCGTAAGATCCGCA       <  1:10391372/35‑1
                                  GCGCTGGGGGCGGGATCGCCCGCGTAAGATCCGCA       >  1:3279647/1‑35
                                  GCGCTGGGGGCGGGATCGCCCGCGTAAGATCCGCA       <  1:7677803/35‑1
                                   CGCTGGGGGCGGGATCGCCCGCGTAAGATCCGCAA      <  1:18173705/35‑1
                                   CGCTGGGGGCGGGATCGCCCGCGTAAGATCCGCAA      <  1:9603613/35‑1
                                   CGCTGGGGGCGGGATCGCCCGCGTAAGATCCGCAA      <  1:10917702/35‑1
                                   CGCTGGGGGCGGGATCGCCCGCGTAAGATCCGCAA      >  1:10210805/1‑35
                                   CGCTGGGGGCGGGATCGCCCGCGTAAGATCCGCAA      >  1:7408259/1‑35
                                    gaTGGGGGCGGGATCGCCCGCGTAAGATCCGCAAT     <  1:6271150/33‑1
                                    GCTGGGGGCGGGATCGCCCGCGTAAGATCCGCAAT     <  1:8001207/35‑1
                                    GCTGGGGGCGGGATCGCCCGCGTAAGATCCGCAAT     >  1:16560695/1‑35
                                    GCTGGGGGCGGGATCGCCCGCGTAAGATCCGCAAT     <  1:7186990/35‑1
                                    GCTGGGGGCGGGATCGCCCGCGTAAGATCCGCAAT     <  1:2169997/35‑1
                                     cgGGGGGCGGGATCGCCCGCGTAAGATCCGCAATT    <  1:15032295/33‑1
                                     CTGGGGGCGGGATCGCCCGCGTAAGATCCGCAATT    >  1:11096548/1‑35
                                     CTGGGGGCGGGATCGCCCGCGTAAGATCCGCAATT    >  1:12070260/1‑35
                                     CTGGGGGCGGGATCGCCCGCGTAAGATCCGCAATT    <  1:5548666/35‑1
                                     CTGGGGGCGGGATCGCCCGCGTAAGATCCGCAATT    <  1:13886847/35‑1
                                     CTGGGGACGGGATCGCCCGCGTAAGATCCGCAATT    <  1:1746077/35‑1
                                      TGGGGGCGGGATCGCCCGCTTAAGATCCGCAATTT   >  1:7143748/1‑35
                                      TGGGGGCGGGATCGCCCGCTTAAGATCCGCAATTT   >  1:6187249/1‑35
                                      TGGGGGCGGGATCGCCCGCTTAAGATCCGCAATTT   >  1:844280/1‑35
                                      TGGGGGCGGGATCGCCCGCGTAAGATCCGCAATTT   <  1:10270942/35‑1
                                      TGGGGGCGGGATCGCCCGCGTAAGATCCGCAATTT   <  1:8587191/35‑1
                                      TGGGGGCGGGATCGCCCGCGTAAGATCCGCAATTT   >  1:9248478/1‑35
                                       GGGGGCGGGATCGCCCGCGTAAGATCCGCAATTTA  >  1:3357108/1‑35
                                       GGGGGCGGGATCGCCCGCGTAAGATCCGCAATTTA  >  1:9117598/1‑35
                                       GGGGGCGGGATCGCCCGCGTAAGATCCGCAATTTA  >  1:17625957/1‑35
                                       GGGGGCGGGATCGCCCGCGTAAGATCCGCAATTTA  <  1:10158816/35‑1
                                                                          
GATGCGTTTGGCGCAGCGAACGATGTACTGAAAGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/108646‑108685
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgGGGGCGGGATCGCCCGCGTAAGATCCGCAATTTA  <  REL606/2243652‑2243619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.