Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 546,191 | IS1 (+) +9 bp | 100% | coding (346‑354/384 nt) | ybcQ → | predicted antitermination protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 546191 = | 0 (0.000) | 77 (0.780) | 35/46 | NT | 100% | coding (346/384 nt) | ybcQ | predicted antitermination protein |
? | REL606 | 546932 = | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
* | ? | REL606 | = 546199 | 0 (0.000) | 125 (1.220) | 42/48 | NT | 100% | coding (354/384 nt) | ybcQ | predicted antitermination protein |
? | REL606 | = 547699 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
ATACACTAAATCAGTAAGTTGGCAGCATCACCACCGAAACCATCACCATTGGCTTCAGTTACG > REL606/547668‑547730 | atACACTAAATCAGTAAGTTGGCAGCATcaccacg > 1:11365908/1‑34 (MQ=17) atACACTAAATCAGTAAGTTGGCAGCATCaccacc > 1:17445301/1‑35 (MQ=35) cacTAAATCAGTAAGTTGGCAGCATCACCACCGaa > 1:12314564/1‑35 (MQ=38) cAGTAAGTTGGCAGCATCACCACCGAAACCATCAc > 1:10370722/1‑35 (MQ=255) gcaTCACCACCGAAACCATCACCATTGGCTTCAGt > 1:3543552/1‑35 (MQ=255) caacaccGAAACCATCACAATTGGCTTCAGTTACg < 1:12604645/32‑1 (MQ=38) | ATACACTAAATCAGTAAGTTGGCAGCATCACCACCGAAACCATCACCATTGGCTTCAGTTACG > REL606/547668‑547730 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |