New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 107576568 (0.660)14 (0.170) 4/38 NT 15.8% coding (220/2547 nt) torA trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit
?REL606 = 3523984 95 (1.170)coding (128/714 nt) livF leucine/isoleucine/valine transporter subunit

CTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1075727‑1075765
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGGAAAACCACCTTGCTTGGTACGTTATGCGGCGA  <  REL606/3523984‑3523951
                                                                         
CTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTG                                        <  1:15441938/35‑1
CTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTG                                        >  1:2019437/1‑35
CTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTG                                        >  1:623399/1‑35
 TATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGG                                       <  1:7948259/35‑1
 TATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGG                                       <  1:18686009/35‑1
 TATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGG                                       <  1:5613567/35‑1
 TATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGG                                       >  1:1358609/1‑35
 TATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGG                                       <  1:8644725/35‑1
  ATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGC                                      <  1:13080452/35‑1
  ATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGC                                      <  1:6543588/35‑1
  ATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGC                                      <  1:19246269/35‑1
   TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG                                     >  1:13178300/1‑35
   TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG                                     <  1:11320296/35‑1
   TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG                                     <  1:17191885/35‑1
   TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG                                     <  1:10222209/35‑1
   TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG                                     <  1:14790196/35‑1
   TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG                                     <  1:20114255/35‑1
   TCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCG                                     >  1:8549419/1‑35
   TCCGCGCGACGGGGAAGGATGGTCGCTTTGTGGCG                                     <  1:12952226/35‑1
    CCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGG                                    <  1:18564113/35‑1
    CCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGG                                    <  1:8885754/35‑1
    CCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGG                                    <  1:10988856/35‑1
     CGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGGG                                   >  1:800654/1‑35
        GCGACGGTGAAGGATGGTCGCTTTGTGGCGGGcgg                                >  1:6846881/1‑32
          GACGGTGAAGGATGGTCGCTTTGTGGCGGGGGAAc                              >  1:8728639/1‑34
          GACGGTGAAGGATGGTCGCTTTGTGGCGGGGGAAc                              >  1:2237093/1‑34
          GACGGTGAAGGATGGTCGCTTTGTGGCGGGGGAAA                              >  1:904461/1‑35
          GACGGTGAAGGATGGTCGCTTTGTGGCGGGGAAAA                              >  1:11190354/1‑35
          GACGGTGAAGGATGGTCGCTTTGTGGCGGGGAAAA                              >  1:5183576/1‑35
           ACGGTGAAGGATGGTCGCTTTGTGGCGGGGGAAAa                             >  1:753460/1‑34
           ACGGTGAAGGATGGTCGCTTTGTGGCGGGGGAAAC                             >  1:14619070/1‑35
           ACGGTGAAGGATGGTCGCTTTGTGGCGGGGAAAcc                             >  1:13771578/1‑33
            CGGTGAAGGATGGTCGCTTTGTGGCGGGGAAAcag                            >  1:7817771/1‑32
            CGGTGAAGGATGGTCGCTTTGTGGCGGGGAAAACg                            >  1:8781299/1‑34
            CGGTGAAGGATGGTCGCTTTGTGGCGGGGAAAACg                            >  1:15327233/1‑34
            CGGTGAAGGATGGTCGCTTTGTGGCGGCGAAAACC                            >  1:14402930/1‑35
             GGTGAAGGATGGTCGCTTTGTGGCGGGGAAAACgg                           >  1:5167232/1‑33
             GGTGAAGGATGGTCGCTTTGTGGCGGGGAAAACCA                           >  1:4285141/1‑35
             GGTGAAGGATGGTCGCTTTGTGGCGGGCAAAACCg                           >  1:5074228/1‑34
              GTGAAGGATGGTCGCTTTGTGGCGGGGAAAACCgt                          >  1:5964022/1‑33
              GTGAAGGATGGTCGCTTTGTGGCGGGGAAAACCgt                          >  1:15281814/1‑33
              GTGAAGGATGGTCGCTTTGTGGCGGGGAAAACCct                          >  1:7988386/1‑33
                                  GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG      >  1:8801591/1‑35
                                  GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG      >  1:9651681/1‑35
                                  GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG      <  1:6543526/35‑1
                                  GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG      <  1:4974025/35‑1
                                  GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG      <  1:18294291/35‑1
                                  GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG      <  1:17739445/35‑1
                                  GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG      <  1:15388601/35‑1
                                  GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG      >  1:14384699/1‑35
                                  GGCGGGGAAAACCACCTTGCTTGGTACGTTATGCG      >  1:10161368/1‑35
                                    CGGGGAAACCCACCTTGCTTGGTACGTTATGCGGC    <  1:7495771/35‑1
                                    CGGGGAAAACCACCTTGCTTGGTACGTTATGCGGC    <  1:5825703/35‑1
                                    CGGGGAAAACCACCTTGCTTGGTACGTTATGCGGC    >  1:5220328/1‑35
                                    CGGGGAAAACCACCTTGCTTGGTACGTTATGCGGC    >  1:2718504/1‑35
                                     GGGGAAAACCACCTTGCTTGGTACGTTATGCGGCG   >  1:7996605/1‑35
                                     GGGGAAAACCACCTTGCTTGGTACGTTATGCGGCG   <  1:19298804/35‑1
                                     GGGGAAAACCACCTTGCTTGGTACGTTATGCGGCG   >  1:13992608/1‑35
                                      GGGAAAACCACCTTGCTTGGTACGTTATGCGGCGA  >  1:1079538/1‑35
                                                                         
CTATCCGCGCGACGGTGAAGGATGGTCGCTTTGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1075727‑1075765
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGGAAAACCACCTTGCTTGGTACGTTATGCGGCGA  <  REL606/3523984‑3523951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.