New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1661078 =57 (0.550)10 (0.120) 4/40 NT 15.8% coding (1002/1302 nt) rstB sensory histidine kinase in two‑component regulatory system with RstA
?REL606 = 3625456 59 (0.690)pseudogene (7/738 nt) yhjQ b3534; cell division protein (chromosome partitioning ATPase)

Only 100 of 108 total aligned reads displayed.

TGCTGGATAATTTGCTCAATAACGCCCTGCGCTACTGCCATTCAACGGTTGAAACCAGCCTGCTACTGT  >  REL606/1661044‑1661112
                                  |                                  
tGCTGGATAATTTGCTCAATAACGCCCTGCGCTAc                                    >  1:14320641/1‑35 (MQ=255)
tGCTGGATAATTTGCTCAATAACGCCCTGCGCTAc                                    <  1:1135382/35‑1 (MQ=255)
 gCTGGATAATTTGCTCAATAACGCCCTGCGCTACt                                   <  1:12989628/35‑1 (MQ=255)
 gCTGGATAATTTGCTCAATAACGCCCTGCGCTACt                                   <  1:12464825/35‑1 (MQ=255)
 gCTGGATAATTTGCTCAATAACGCCCTGCGCTACt                                   <  1:18545461/35‑1 (MQ=255)
 gCTGGATAATTTGCTCAATAACGCCCTGCGCTACt                                   <  1:9594901/35‑1 (MQ=255)
 gCTGGATAATTTGCTCAATAACGCCCTGCGCTACt                                   >  1:436335/1‑35 (MQ=255)
 gCTGGATAATTTGCTCAATAACGCCCTGCGCTACt                                   >  1:10265923/1‑35 (MQ=255)
  cTGGATAATTTGCTCAATAACGCCCTGCGCTACTg                                  >  1:19249408/1‑35 (MQ=255)
  cTGGATAATTTGCTCAATAACGCCCTGCGCTACTg                                  <  1:14841336/35‑1 (MQ=255)
  cTGGATAATTTGCTCAATAACGCCCTGCGCTACTg                                  >  1:7963271/1‑35 (MQ=255)
   tGGATAATTTGCTCTATAACGCCCTGCGCTACTGc                                 >  1:1003955/1‑35 (MQ=255)
   tGGATAATTTGCTCAATAACGCCCTGCGCTACTGc                                 <  1:2738975/35‑1 (MQ=255)
   tGGATAATTTGCTCAATAACGCCCTGCGCTACTGc                                 >  1:5098719/1‑35 (MQ=255)
   tGGATAATTTGCTCAATAACGCCCTGCGCTACTGc                                 >  1:10952459/1‑35 (MQ=255)
     gATAATTTGCTCAATAACGCCCTGCGCTACTGCCa                               >  1:764450/1‑35 (MQ=255)
     gATAATTTGCTCAATAACGCCCTGCGCTACTGCCa                               >  1:13034958/1‑35 (MQ=255)
     gATAATTTGCTCAATAACGCCCTGCGCTACTGCCa                               >  1:367585/1‑35 (MQ=255)
     gATAATTTGCTCAATAACGCCCTGCGCTACTGCCa                               >  1:4520647/1‑35 (MQ=255)
      aTAATTTGCTCAATAACGCCCTGCGCTACTGCCAt                              >  1:11436438/1‑35 (MQ=255)
      aTAATTTGCTCAATAACGCCCTGCGCTACTGCCAt                              >  1:2644117/1‑35 (MQ=255)
      aTAATTTGCTCAATAACGCCCTGCGCTACTGCCAt                              >  1:7486025/1‑35 (MQ=255)
        aaTTTGCTCAATAACGCCCTGCGCTACTGCCATTc                            >  1:18656530/1‑35 (MQ=255)
        aaTTTGCTCAATAACGCCCTGCGCTACTGCCATTc                            >  1:5707189/1‑35 (MQ=255)
        aaTTTGCTCAATAACGCCCTGCGCTACTGCCATTc                            >  1:17693416/1‑35 (MQ=255)
        aaTTTGCTCAATAACGCCCTGCGCTACTGCCATTc                            >  1:19161207/1‑35 (MQ=255)
        aaTTTGCTCAATAACGCCCTGCGCTACTGCCATTc                            >  1:9219973/1‑35 (MQ=255)
        aaTTTGCTCAATAACGCCCTGCGCTACTGCCATTc                            >  1:11951015/1‑35 (MQ=255)
          tttGCTCAATAACGCCCTGCGCTACTGCCATTCaa                          >  1:16753790/1‑35 (MQ=255)
           ttGCTCAATAACGCCCTGCGCTACTGCCATTCAAc                         >  1:4338143/1‑35 (MQ=255)
            tGCTCAATAACGCCCTGCGCTACTGCCATTCAACg                        >  1:14108262/1‑35 (MQ=255)
             gCTCAATAACGCCCTGCGCTACTGCCATTCAACgg                       >  1:19100188/1‑35 (MQ=255)
             gCTCAATAACGCCCTGCGCTACTGCCATTCAACgg                       >  1:1291912/1‑35 (MQ=255)
             gCTCAATAACGCCCTGCGCTACTGCCATTCAACgg                       >  1:12664554/1‑35 (MQ=255)
             gCTCAATAACGCCCTGCGCTACTGCCATTCAACgg                       >  1:11733230/1‑35 (MQ=255)
              cTCAATAACGCCCTGCGCTACTGCCATTCAACGGt                      >  1:326790/1‑35 (MQ=255)
              cTCAATAACGCCCTGCGCTACTGCCATTCAACGGt                      >  1:9611675/1‑35 (MQ=255)
              cTCAATAACGCCCTGCGCTACTGCCATTCAACGGt                      >  1:18057045/1‑35 (MQ=255)
                cAATAACGCCCTGCGCTACTGCCATTCAACGGTTg                    >  1:13289450/1‑35 (MQ=255)
                 aaTAACGCCCTGCGCTACTGCCATTCAACGGTTGa                   >  1:14547220/1‑35 (MQ=255)
                 aaTAACGCCCTGCGCTACTGCCATTCAACGGTTGa                   >  1:11022321/1‑35 (MQ=255)
                 aaTAACGCCCTGCGCTACTGCCATTCAACGGTTGa                   >  1:17679005/1‑35 (MQ=255)
                  aTAACGCCCTGCGCTACTGCCATTCAACGGTTGaa                  >  1:1136791/1‑35 (MQ=255)
                   tAACGCCCTGCGCTACTGCCATTCAACGGTTGaaa                 >  1:4657639/1‑35 (MQ=255)
                   tAACGCCCTGCGCTACTGCCATTCAACGGTTGaaa                 >  1:4588626/1‑35 (MQ=255)
                   tAACGCCCTGCGCTACTGCCATTCAACGGTTGaaa                 >  1:10010181/1‑35 (MQ=255)
                    accGCCCTCCCCTCCTGCCATTCAACGGTTGAAAc                <  1:2612997/33‑1 (MQ=21)
                    aaCGCCCTGCGCTACTGCCATTCAACTGTTGAAAc                >  1:914087/1‑35 (MQ=255)
                    aaCGCCCTGCGCTACTGCCATTCAACGGTTGAAAc                >  1:15996319/1‑35 (MQ=255)
                    aaCGCCCTGCGCTACTGCCATTCAACGGTTGAAAc                >  1:107343/1‑35 (MQ=255)
                    aaCGCCCTGCGCTACTGCCATTCAACGGTTGAAAc                >  1:9453913/1‑35 (MQ=255)
                     ccccccTGCCCTCCTGCCATTCAACGGTTGAAAcc               <  1:8049822/32‑1 (MQ=25)
                     aCGCCCTGCGCTACTGCCATTCAACGGTTGAAAcc               >  1:14010533/1‑35 (MQ=255)
                      cccccgccccccCTGCCATTCAACGGTTGAAACCa              >  1:3913297‑M1/13‑35 (MQ=255)
                      ccccccccccccCTGCCATTCAACGGTTGAAACCa              >  1:9685832‑M1/13‑35 (MQ=255)
                      cccccTGCCCCCCTGCCATTCAACGGTTGAAACCa              <  1:12940766/33‑1 (MQ=25)
                      cGCCCTGCGCTACTGCCATTCAACGGTTGAAACCa              >  1:2860878/1‑35 (MQ=255)
                      cGCCCTGCGCTACTGCCATTCAACGGTTGAAACCa              >  1:4447138/1‑35 (MQ=255)
                      cGCCCTGCGCCCCTGCCATTCAACGGTTGAAACCa              <  1:18141989/35‑1 (MQ=37)
                       gCCCTGCGCTACTGCCATTCAACGGTTGAAACCaa             >  1:14083190/1‑34 (MQ=255)
                       gCCCTGCGCTACTGCCATTCAACGGTTGAAACCAg             >  1:2686178/1‑35 (MQ=255)
                       gCCCTGCGCTACTGCCATTCAACGGTTGAAACCAg             >  1:14500309/1‑35 (MQ=255)
                       ccccgccccccCTGCCATTCAACGGTTGAAACCAg             >  1:13467863‑M1/12‑35 (MQ=255)
                       ccccTGCGCTCCTGCCATTCAACGGTTGAAACCAg             <  1:10474309/34‑1 (MQ=255)
                       ccccGGCGCCCCTGCCATTCAACGGTTGAAACCAg             <  1:14539235/34‑1 (MQ=25)
                        cccgccccccCTGCCATTCAACGGTTGAAACCAGc            >  1:6484225‑M1/11‑35 (MQ=255)
                        ccccccccccCTGCCATTCAACGGTTGAAACCAGc            >  1:14419950‑M1/11‑35 (MQ=255)
                         ccgccgcccCTGCCATTCAACGGTTGAAACCAGcc           >  1:5701936‑M1/10‑35 (MQ=255)
                         ccTGCGCTACTGCCATTCAACGGTTGAAACCAGcc           >  1:1889388/1‑35 (MQ=255)
                          ctgcccccCTGCCATTCAACGGTTGAAACCAGCCt          >  1:7980870‑M1/9‑35 (MQ=255)
                          cgcccctcCTGCCATTCAACGGTTGAAACCAGCCt          >  1:18222591‑M1/9‑35 (MQ=255)
                          cgcccctcCTGCCATTCAACGGTTGAAACCAGCCt          >  1:16017432‑M1/9‑35 (MQ=255)
                          cTGCGCTACTGCCATTCAACGGTTGAAACCAGCCt          >  1:2570053/1‑35 (MQ=255)
                          cTGCGCTACTGCCATTCAACGGTTGAAACCAGCCt          >  1:18944514/1‑35 (MQ=255)
                          cTGCGCTACTGCCATTCAACGGTTGAAACCAGCCt          >  1:9381064/1‑35 (MQ=255)
                           tgcccccCTGCCATTCAACGGTTGAAACCAGCCTg         >  1:10844572‑M1/8‑35 (MQ=255)
                           tGCGCTACTGCCATTCAACGGTTGAAACCAGCCTg         >  1:9696692/1‑35 (MQ=255)
                           tGCGCTACTGCCATTCAACGGTTGAAACCAGCCTg         >  1:8151546/1‑35 (MQ=255)
                           tGCGCTACTGCCATTCAACGGTTGAAACCAGCCTg         >  1:7868767/1‑35 (MQ=255)
                           cccccccCTGCCATTCAACGGTTGAAACCAGCCTg         >  1:15180992‑M1/8‑35 (MQ=255)
                            gcgcTACTGCCATTCAACGGTTGAAACCAGCCTGc        >  1:16461397/1‑35 (MQ=255)
                              gcTACTGCCATTCAACGGTTGAAACCAGCCTGCTa      >  1:10243398/1‑35 (MQ=255)
                              gcTACTGCCATTCAACGGTTGAAACCAGCCTGCTa      >  1:7501973/1‑35 (MQ=255)
                              gcTACTGCCATTCAACGGTTGAAACCAGCCTGCTa      >  1:9272916/1‑35 (MQ=255)
                              ccccCTGCCATTCAACGGTTGAAACCAGCCTGCTa      >  1:15460511‑M1/5‑35 (MQ=255)
                              ccccCTGCCATTCAACGGTTGAAACCAGCCTGCTa      >  1:8604599‑M1/5‑35 (MQ=255)
                               cccCTGCCATTCAACGGTTGAAACCAGCCTGCTAc     >  1:19127598‑M1/4‑35 (MQ=255)
                                tACTGCCATTCAACGGTTGAAACCAGCCTGCTACt    >  1:10279413/1‑35 (MQ=255)
                                tACTGCCATTCAACGGTTGAAACCAGCCTGCTACt    >  1:13217659/1‑35 (MQ=255)
                                tACTGCCATTCAACGGTTGAAACCAGCCTGCTACt    >  1:4944484/1‑35 (MQ=255)
                                tACTGCCATTCAACGGTTGAAACCAGCCTGCTACt    >  1:17544009/1‑35 (MQ=255)
                                tACTGCCATTCAACGGTTGAAACCAGCCTGCTACt    >  1:7444213/1‑35 (MQ=255)
                                ccCTGCCATTCAACGGTTGAAACCAGCCTGCTACt    >  1:18087011‑M1/3‑35 (MQ=255)
                                 cCTGCCATTCAACGGTTGAAACCAGCCTGCTACTg   >  1:1300595‑M1/2‑35 (MQ=255)
                                 cCTGCCATTCAACGGTTGAAACCAGCCTGCTACTg   >  1:20428485‑M1/2‑35 (MQ=255)
                                 cCTGCCATTCAACGGTTGAAACCAGCCTGCTACTg   >  1:971121‑M1/2‑35 (MQ=255)
                                 cCTGCCATTCAACGGTTGAAACAAGCCTGCTACTg   >  1:5768226‑M1/2‑35 (MQ=255)
                                 aCTGCCATTCAACGGTTGAAACCAGCCTGCTACTg   >  1:18407512/1‑35 (MQ=255)
                                 aCTGCCATTCAACGGTTGAAACCAGCCTGCTACTg   >  1:4744893/1‑35 (MQ=255)
                                  CTGCCATTCAACGGTTGAAACCAGCCTGCTACTGt  <  1:7832799‑M1/35‑1 (MQ=255)
                                  |                                  
TGCTGGATAATTTGCTCAATAACGCCCTGCGCTACTGCCATTCAACGGTTGAAACCAGCCTGCTACTGT  >  REL606/1661044‑1661112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.