Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 1,331,794 C→A 100% T792K (ACG→AAG)  topA → DNA topoisomerase I

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6061,331,7940C→A100.0% 376.6 119T792K (ACG→AAG) topADNA topoisomerase I
Reads supporting (aligned to +/- strand):  new base (58/61):  ref base (0/0):  total (58/61)

Only 100 of 128 total aligned reads displayed.

GGCTGCCAACACTTTCCCGAAATCGCGTGAAACGCGTGCGCCACTGGTGGAAGAGCTTTATCGC  >  REL606/1331762‑1331825
                                |                               
ggCTGCCAACACTTTCCCGAAATCGCGTGAAAagc                               <  1:15877037/35‑1 (MQ=255)
ggCTGCCAACACTTTCCCGAAATCGCGTGAAAagc                               >  1:3598814/1‑35 (MQ=255)
ggCTGCCAACACTTTCCCGAAATCGCGTGAAAagc                               >  1:11388594/1‑35 (MQ=255)
 gCTGCCAACACTTTCCCGAAATCGCGTGAAAagcg                              <  1:14309213/35‑1 (MQ=255)
 gCTGCCAACACTTTCCCGAAATCGCGTGAAAagcg                              >  1:16351730/1‑35 (MQ=255)
 gCTGCCAACACTTTCCCGAAATCGCGTGAAAagcg                              >  1:4853344/1‑35 (MQ=255)
  cTGCCAACACTTTCCCGAAATCGCGTGAAAAGCGt                             <  1:6195150/35‑1 (MQ=255)
  cTGCCAACACTTTCCCGAAATCGCGTGAAAAGCGt                             >  1:3116792/1‑35 (MQ=255)
  cTGCCAACACTTTCCCGAAATCGCGTGAAAAGCGt                             <  1:13982498/35‑1 (MQ=255)
   tGCCAACACTTTCCCGAAATCGCGTGAAAAGCGTg                            >  1:1715997/1‑35 (MQ=255)
   tGCCAACACTTTCCCGAAATCGCGTGAAAAGCGTg                            <  1:11599332/35‑1 (MQ=255)
   tGCCAACACTTTCCCGAAATCGCGTGAAAAGCGTg                            >  1:3900242/1‑35 (MQ=255)
    gCCAACACTTTCCCGAAATCGCGTGAAAAGCGTgc                           <  1:2040737/35‑1 (MQ=255)
    gCCAACACTTTCCCGAAATCGCGTGAAAAGCGTgc                           >  1:312241/1‑35 (MQ=255)
    gCCAACACTTTCCCGAAATCGCGTGAAAAGCGTgc                           <  1:4523639/35‑1 (MQ=255)
    gCCAACACTTTCCCGAAATCGCGTGAAAAGCGTgc                           <  1:19688420/35‑1 (MQ=255)
    gCCAACACTTTCCCGAAATCGCGTGAAAAGCGTgc                           >  1:14547532/1‑35 (MQ=255)
    gCCAACACTTTCCCGAAATCGCGTGAAAAGCGTgc                           >  1:9451735/1‑35 (MQ=255)
    gCCAACACTTTCCCGAAATCGCGTGAAAAGCGTgc                           >  1:10822448/1‑35 (MQ=255)
    gCCAACACTTTCCCGAAATCGCGTGAAAAGCGTgc                           >  1:1298979/1‑35 (MQ=255)
      cAACACTTTCCCGAAATCGCGTGAAAAGCGTgcgc                         <  1:661811/35‑1 (MQ=255)
      cAACACTTTCCCGAAATCGCGTGAAAAGCGTgcgc                         >  1:14456047/1‑35 (MQ=255)
      cAACACTTTCCCGAAATCGCGTGAAAAGCGTgcgc                         >  1:13900726/1‑35 (MQ=255)
       aaCACTTTCCAGAAATCGCGTGAAAAGCGTGCGcc                        <  1:17481682/35‑1 (MQ=37)
        acacTTTCCCGAAATCGCGTGAAAAGCGTGCGCCa                       >  1:11617952/1‑35 (MQ=255)
        acacTTTCCCGAAATCGCGTGAAAAGCGTGCGCCa                       >  1:3843458/1‑35 (MQ=255)
        acacTTTCCCGAAATCGCGTGAAAAGCGTGCGCCa                       >  1:7286845/1‑35 (MQ=255)
        acacTTTCCCGAAATCGCGTGAAAAGCGTGCGCCa                       <  1:4586777/35‑1 (MQ=255)
        acacTTTCCCGAAATCGCGTGAAAAGCGTGCGCCa                       >  1:15615683/1‑35 (MQ=255)
         cacTTTCCCGAAATCGCGTGAAAAGCGTGCGCCAc                      >  1:7875712/1‑35 (MQ=255)
         cacTTTCCCGAAATCGCGTGAAAAGCGTGCGCCAc                      <  1:12986647/35‑1 (MQ=255)
         cacTTTACCGAAATCGCGTGAAAAGCGTGCGCCAc                      <  1:6601536/35‑1 (MQ=38)
          acTTTCCCGAAATCGCGTGAAAAGCGTGCGCCACt                     <  1:3730335/35‑1 (MQ=255)
          acTTTCCCAAAAGCGCGTGAAAAGCGTGCGCCACt                     <  1:332157/35‑1 (MQ=25)
           cTTTCCCGAAATTGCGTGAAAAGCGTGCGCCACtg                    >  1:2318725/1‑35 (MQ=38)
           cTTTCCCGAAATCGCGTGAAAAGCGTGCGCCACtg                    >  1:9119251/1‑35 (MQ=255)
           cTTTCCCGAAATCGCGTGAAAAGCGTGCGCCACtg                    >  1:18431532/1‑35 (MQ=255)
            tttCCCGAAATCGCGTGAAAAGCGTGCGCCACtgg                   >  1:15285585/1‑35 (MQ=255)
            tttCCCGAAATCGCGTGAAAAGCGTGCGCCACtgg                   <  1:15507152/35‑1 (MQ=255)
            tttCCCGAAATCGCGTGAAAAGCGTGCGCCACtgg                   <  1:5306889/35‑1 (MQ=255)
             ttCCCGAAATCGCGTGAAAAGCGTGCGCCACtggt                  >  1:13814915/1‑35 (MQ=255)
             ttCCCGAAATCGCGTGAAAAGCGTGCGCCACtggt                  <  1:3562590/35‑1 (MQ=255)
              tCCCGAAATCGCGTGAAAAGCGTGCGCCACtggtg                 >  1:4852008/1‑35 (MQ=255)
              tCCCGAAATCGCGTGAAAAGCGTGCGCCACtggtg                 <  1:8410859/35‑1 (MQ=255)
              tCCCGAAATCGCGTGAAAAGCGTGCGCCACtggtg                 >  1:878581/1‑35 (MQ=255)
              tCCCGAAATCGCGTGAAAAGCGTGCGCCACtggtg                 <  1:2469071/35‑1 (MQ=255)
               cccGAAATCGCGTGAAAAGCGTGCGCCACtggtgg                >  1:9951241/1‑35 (MQ=255)
                ccGAAATCGCGTGAAAAGCGTGCGCCACTTGTGGa               >  1:16248381/1‑35 (MQ=38)
                ccGAAATCGCGTGAAAAGCGTGCGCCACTTGTGGa               >  1:18996304/1‑35 (MQ=38)
                ccGAAATCGCGTGAAAAGCGTGCGCCACTGGTGGa               >  1:7791133/1‑35 (MQ=255)
                 cGAAATCGCGTGAAAAGCGTGCGCCACTGGTGGaa              >  1:6888202/1‑35 (MQ=255)
                 cGAAATCGCGTGAAAAGCGTGCGCCACTGGTGGaa              <  1:7776446/35‑1 (MQ=255)
                 cGAAATCGCGTGAAAAGCGTGCGCCACTGGTGGaa              <  1:8067601/35‑1 (MQ=255)
                 cGAAATCGCGTGAAAAGCGTGCGCCACTGGTGGaa              <  1:13507657/35‑1 (MQ=255)
                 cGAAATCGCGTGAAAAGCGTGCGCCACTGGTGGaa              <  1:12239883/35‑1 (MQ=255)
                  gAAATCGCGTGAAAAGCGTGCGCCACTGGTGGAag             >  1:6276114/1‑35 (MQ=255)
                  gAAATCGCGTGAAAAGCGTGCGCCACTGGTGGAag             >  1:16378632/1‑35 (MQ=255)
                  gAAATCGCGTGAAAAGCGTGCGCCACTGGTGGAag             <  1:411418/35‑1 (MQ=255)
                  gAAATCGCGTGAAAAGCGTGCGCCACTGGTGGAag             >  1:1311689/1‑35 (MQ=255)
                   naaTCGCGTGAAAAGCGTGCGCCACTGGTGGAaga            >  1:8339430/2‑35 (MQ=255)
                   aaaTCGCGTGAAAAGCGTGCGCCACTGGTGGAaga            >  1:5259013/1‑35 (MQ=255)
                   aaaTCGCGTGAAAAGCGTGCGCCACTGGTGGAaga            >  1:5098017/1‑35 (MQ=255)
                   aaaTCGCGTGAAAAGCGTGCGCCACTGGTGGAaga            >  1:8238461/1‑35 (MQ=255)
                   aaaTCGCGTGAAAAGCGTGCGCCACTGGTGGAaga            >  1:4976603/1‑35 (MQ=255)
                   aaaTCGCGTGAAAAGCGTGCGCCACTGGTGGAaga            <  1:10185470/35‑1 (MQ=255)
                   aaaTCGCGTGAAAAGCGTGCGCCACTGGTGGAaga            <  1:13722275/35‑1 (MQ=255)
                   aaaTCGCGTCAAAAGCGTGCGCCACTGGTGGAaga            >  1:5191647/1‑35 (MQ=37)
                    aaTCGCGTGAAAAGCGTGCGCCACTGGTGGAagag           >  1:16266497/1‑35 (MQ=255)
                    aaTCGCGTGAAAAGCGTGCGCCACTGGTGGAagag           >  1:6794874/1‑35 (MQ=255)
                     aTCGCGTGAAAAGCGTGCGCCACTGGTGGAAGAGc          <  1:3145478/35‑1 (MQ=255)
                     aTCGCGTGAAAAGCGTGCGCCACTGGTGGAAGAGc          <  1:16173003/35‑1 (MQ=255)
                     aTCGCGTGAAAAGCGTGCGCCACTGGTGGAAGAGc          >  1:19544312/1‑35 (MQ=255)
                      tCGCGTGAAAAGCGTGCGCCACTGGTGGAAGAGCt         <  1:779197/35‑1 (MQ=255)
                      tCGCGTGAAAAGCGTGCGCCACTGGTGGAAGAGCt         <  1:18047588/35‑1 (MQ=255)
                      tCGCGTGAAAAGCGTGCGCCACTGGTGGAAGAGCt         <  1:17957108/35‑1 (MQ=255)
                       cgcgTGAAAAGCGTGCGCCACTGGTGGAAGAGCtt        <  1:10326688/35‑1 (MQ=255)
                       cgcgTGAAAAGCGTGCGCCACTGGTGGAAGAGCtt        >  1:14561630/1‑35 (MQ=255)
                       cgcgTGAAAAGCGTGCGCCACTGGTGGAAGAGCtt        <  1:16211565/35‑1 (MQ=255)
                       cgcgTGAAAAGCGTGCGCCACTGGTGGAAGAGCtt        >  1:7206388/1‑35 (MQ=255)
                       cgcgTGAAAAGCGTGCGCCACTGGTGGAAGAGCtt        <  1:3392416/35‑1 (MQ=255)
                       cgcgTGAAAAGCGTGCGCCACTGGTGGAAGAGCtt        >  1:18480429/1‑35 (MQ=255)
                        gcgTGAAAAGCGTGCGCCACTGGTTGAAGAGCttt       >  1:7056690/1‑35 (MQ=37)
                        gcgTGAAAAGCGTGCGCCACTGGTGGAAGAGCttt       >  1:12411460/1‑35 (MQ=255)
                        gcgTGAAAAGCGTGCGCCACTGGTGGAAGAGCttt       <  1:17331556/35‑1 (MQ=255)
                         cgTGAAAAGCGTGCGCCACTGGTGGAAGAGCTTTa      <  1:19856685/35‑1 (MQ=255)
                          gTGAAAAGCGTGCGCCACTGGTTGAAGAGCTTTAt     >  1:889903/1‑35 (MQ=37)
                          gTGAAAAGCGTGCGCCACTGGTGGAAGAGCTTTAt     <  1:16316791/35‑1 (MQ=255)
                          gTGAAAAGCGTGCGCCACTGGTGGAAGAGCTTTAt     <  1:16993127/35‑1 (MQ=255)
                          gTGAAAAGCGTGCGCCACTGGTGGAAGAGCTTTAt     <  1:5676946/35‑1 (MQ=255)
                          gTGAAAAGCGTGCGCCACTGGTGGAAGAGCTTTAt     <  1:17962779/35‑1 (MQ=255)
                           tGAAAAGCGTGCGCCACTGGTGGAAGAGCTTTATc    <  1:8050512/35‑1 (MQ=255)
                           tGAAAAGCGTGCGCCACTGGTGGAAGAGCTTTATc    <  1:14719594/35‑1 (MQ=255)
                           tGAAAAGCGTGCGCCACTGGTGGAAGAGCTTTATc    <  1:2687571/35‑1 (MQ=255)
                           tGAAAAGCGTGCGCCACTGGTGGAAGAGCTTTATc    >  1:6162588/1‑35 (MQ=255)
                            gAAAAGCGTGCGCCACTTGTGGAAGAGCTTTATCg   >  1:17831985/1‑35 (MQ=37)
                            gAAAAGCGTGCGCCACTGGTGGAAGAGCTTTATCg   <  1:1818819/35‑1 (MQ=255)
                            gAAAAGCGTGCGCCACTGGTGGAAGAGCTTTATCg   >  1:19156843/1‑35 (MQ=255)
                            gAAAAGCGTGCGCCACTGGTGGAAGAGCTTTATCg   >  1:15425441/1‑35 (MQ=255)
                             aaaAGCGTGCGCCACTGGTGGAAGAGCTTTATCGc  <  1:20488816/35‑1 (MQ=255)
                             aaaAGCGTGCGCCACGGGTGGAAGAGCTTTATCGc  >  1:4249901/1‑35 (MQ=37)
                                |                               
GGCTGCCAACACTTTCCCGAAATCGCGTGAAACGCGTGCGCCACTGGTGGAAGAGCTTTATCGC  >  REL606/1331762‑1331825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.