New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 9903115 (1.120)22 (0.220) 8/46 NT 23.0% intergenic (+12/+23) mogA/yaaH molybdenum cofactor biosynthesis protein/conserved inner membrane protein associated with acetate transport
?REL606 = 1095351 37 (0.380)intergenic (‑185/‑238) putA/putP fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase/proline:sodium symporter

Only 100 of 239 total aligned reads displayed.

CAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTC  >  REL606/9869‑9937
                                  |                                  
cAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC                                    <  1:6943112‑M1/35‑1 (MQ=255)
cAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC                                    <  1:17505532‑M1/35‑1 (MQ=255)
cAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC                                    >  1:3703000‑M1/1‑35 (MQ=255)
cAAGACGCGACGTTAGCGAATAAAAAAATCCCCCC                                    <  1:7826596‑M1/35‑1 (MQ=255)
 aaGACGCGACGTTAGCGAATAAAAAAATCCCCCCG                                   <  1:17067420‑M1/35‑1 (MQ=255)
  aGACGCGACGTTAGCGAATAAAAAAATCCCCCCGa                                  >  1:4186057/1‑35 (MQ=255)
   gACGCGACGTTAGCGAATAAAAAAATCCCCCCGAg                                 <  1:17417379/35‑1 (MQ=255)
   gACGCGACGTTAGCGAATAAAAAAATCCCCCCGAg                                 <  1:14678745/35‑1 (MQ=255)
    aCGCGACGTTAGCGAATAAAAAAATCCCCCCGAGc                                <  1:12458399/35‑1 (MQ=255)
     cgcgACGTTAGCGAATAAAAAAATCCCCCCGAGCg                               >  1:20020440/1‑35 (MQ=255)
     cgcgACGTTAGCGAATAAAAAAATCCCCCCGAGCg                               >  1:13133146/1‑35 (MQ=255)
      gcgACGTTAGCGAATAAAAAAATCCCCCCGAGCgg                              >  1:3765187/1‑35 (MQ=255)
      gcgACGTTAGCGAATAAAAAAATCCCCCCGAGCgg                              >  1:12242551/1‑35 (MQ=255)
       cgACGTTAGCGAATAAAAAAATCCCCCCGAGCggg                             <  1:17910549/35‑1 (MQ=255)
        gACGTTAGCGAATAAAAAAATCCCCCCGAGCgggg                            >  1:6458885/1‑35 (MQ=255)
        gACGTTAGCGAATAAAAAAATCCCCCCGAGCgggg                            >  1:18269575/1‑35 (MQ=255)
        gACGTTAGCGAATAAAAAAATCCCCCCGAGCgggg                            <  1:17155308/35‑1 (MQ=255)
        gACGTTAGCGAATAAAAAAATCCCCCCGAGCgggg                            >  1:16324165/1‑35 (MQ=255)
         aCGTTAGCGAATAAAAAAATCCCCCCGAGCggggg                           >  1:17731138/1‑35 (MQ=255)
         aCGTTAGCGAATAAAAAAATCCCCCCAAGCggggg                           >  1:16703965/1‑35 (MQ=255)
          cGTTAGCGAATAAAAAAATCCCCCCGAGCgggggg                          >  1:16012113/1‑35 (MQ=255)
           gTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGa                         >  1:6977793/1‑35 (MQ=255)
           gTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGa                         >  1:7498019/1‑35 (MQ=255)
            ttAGCGAATAAAAAAATCCCCCCGAGCGGGGGGAt                        <  1:20189688/35‑1 (MQ=255)
            ttAGCGAATAAAAAAATCCCCCCGAGCGGGGGGAt                        <  1:16553532/35‑1 (MQ=255)
             tAGCGAATAAAAAAATCCCCCCGAGCGGGGGGAtc                       <  1:3483711/35‑1 (MQ=255)
              aGCGAATAAAAAAATCCCCCCGAGCGGGGGGAtct                      <  1:18787298/35‑1 (MQ=255)
              aGCGAATAAAAAAATCCCCCCGAGCGGGGGGAtct                      <  1:9808305/35‑1 (MQ=255)
              aGCGAATAAAAAAATCCCCCCGAGCGGGGGGAtct                      <  1:6480802/35‑1 (MQ=255)
              aGCGAATAAAAAAATCCCCCCGAGCGGGGGGAtct                      <  1:19061486/35‑1 (MQ=255)
               gCGAATAAAAAAATCCCCCCGAGCTGGGGGAtctc                     >  1:18383514/1‑35 (MQ=255)
               gCGAATAAAAAAATCCCCCCGAGCGGGGGGAtctc                     <  1:18167621/35‑1 (MQ=255)
               gCGAATAAAAAAATCCCCCCGAGCGGGGGGAtctc                     >  1:2434816/1‑35 (MQ=255)
                cGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCa                    <  1:1127225/35‑1 (MQ=255)
                cGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCa                    >  1:14968017/1‑35 (MQ=255)
                cGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCa                    <  1:12999511/35‑1 (MQ=255)
                 gAATAAAAAAATCCCCCCGAGCGGGGGGATCTCaa                   <  1:6895415/35‑1 (MQ=255)
                  aaTAAAAAAATCCCCCCGAGCTGGGGGATCTCaaa                  >  1:20422161/1‑35 (MQ=255)
                  aaTAAAAAAATCCCCCCGAGCGGTGGGATCTCaaa                  >  1:11694793/1‑35 (MQ=255)
                  aaTAAAAAAATCCCCCCGAGCGGGGGGATCTCaaa                  >  1:8183378/1‑35 (MQ=255)
                  aaTAAAAAAATCCCCCCGAGCGGGGGGATCTCaaa                  <  1:17736269/35‑1 (MQ=255)
                   aTAAAAAAATCCCCCCGAGCGGGGGGATCTCaaaa                 <  1:6349180/35‑1 (MQ=255)
                   aTAAAAAAATCCCCCCGAGCGGGGGGATCTCaaaa                 >  1:8550817/1‑35 (MQ=255)
                     aaaaaaaTCCCCCCGcccgtcagggcggttgtcat               <  1:5907627‑M1/35‑21 (MQ=255)
                     aaaaaaaTCCCCCCGAGCGGGGGGATCTCAAAACa               <  1:4092722/35‑1 (MQ=255)
                     aaaaaaaTCCCCCCGAGCGGGGGGATCTCAAAACa               >  1:6049599/1‑35 (MQ=255)
                     aaaaaaaTCCCCCCGAGCGGGGGGATCTCAAAACa               <  1:148823/35‑1 (MQ=255)
                     aaaaaaaTCCACCCGcccgtcagggcggttgtcat               <  1:10391100‑M1/35‑21 (MQ=255)
                      aaaaaaTCCCCCCGAGCGGGGGGATCTCAAAACaa              >  1:8972050/1‑35 (MQ=255)
                      aaaaaaCCCCCCCtgccgcagagaaaaagtctgag              <  1:9127101‑M1/35‑23 (MQ=255)
                       aaaaaTCCCCCCtgccgcagagaaaaagtctgagt             <  1:4792748‑M1/35‑24 (MQ=255)
                       aaaaaTCCCCCCGAGCGGGGGGATCTCAAAACAAt             >  1:5722446/1‑35 (MQ=255)
                       aaaaaTCCCCCCGAGCGGGGGGATCTCAAAACAAt             >  1:7855197/1‑35 (MQ=255)
                        caaatCCCCCCGcccgtcagggcggttgtcatatg            <  1:20251378‑M1/34‑24 (MQ=255)
                        aaatTCCCCCCtgccgcagagaaaaagtctgagtt            <  1:14431954‑M1/35‑25 (MQ=255)
                        aaaaTCCCCCCtgccgcagagaaaaagtctgagtt            <  1:16605153‑M1/35‑25 (MQ=255)
                        aaaaTCCCCCCtgccgcagagaaaaagtctgagtt            <  1:11470188‑M1/35‑25 (MQ=255)
                        aaaaTCCCCCCGAGCGGGGGGATCTCAAAACAAtt            <  1:16685088/35‑1 (MQ=255)
                        aaaaTCCACCCGcccgtcagggcggttgtcatatg            <  1:9230855‑M1/35‑24 (MQ=255)
                        aaaaGCCCCCCGAGCGGGGGGATCTCAAAACAAtt            <  1:12887035/35‑1 (MQ=255)
                         aaaTCCCCCCGAGCGGGGGGATCTCAAAACAATTa           >  1:17284613/1‑35 (MQ=255)
                         aaaTCCCCCCGAGCGGGGGGATCTCAAAACAATTa           >  1:10645503/1‑35 (MQ=255)
                         aaaTCCCCCCGAGCGGGGGGATCTCAAAACAATTa           >  1:9905422/1‑35 (MQ=255)
                         aaaTCCACCCGcccgtcagggcggttgtcatatgg           <  1:16888636‑M1/35‑25 (MQ=255)
                          atccccccctgccgcagagaaaaagtctgagttat          <  1:11628459‑M1/32‑27 (MQ=255)
                          aaTCCCCCCGAGCGGGGGGATCTCAAAACAATTAg          >  1:14351235/1‑35 (MQ=255)
                           aTCCCCCCtgccgcagagaaaaagtctgagttatt         <  1:15154420‑M1/35‑28 (MQ=255)
                           aTCCCCCCGAGCGGGGGGATCTCAAAACAATTAGt         >  1:10240874/1‑35 (MQ=255)
                           aTCCCCCCGAGCGGGGGGATCTCAAAACAATTAGt         >  1:3027811/1‑35 (MQ=255)
                            tCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTg        <  1:10987006/35‑1 (MQ=255)
                            tCCACCCGcccgtcagggcggttgtcatatggagt        <  1:19881034‑M1/35‑28 (MQ=255)
                             tccccctgccgcagagaaaaagtctgagttatttt       <  1:8427068‑M1/34‑30 (MQ=255)
                             cccgccGAGCGGGGGGATCTCAAAACAATTAGTgg       <  1:14118456/35‑1 (MQ=255)
                             cccccctgccgcagagaaaaagtctgagttatttt       <  1:9429627‑M1/35‑30 (MQ=255)
                             ccccccGcccgtcagggcggttgtcatatggagta       <  1:13694448‑M1/35‑29 (MQ=255)
                             ccccccGAGCGGGGGGATCTCAAAACAATTAGTgg       <  1:7437016/35‑1 (MQ=255)
                             ccccccGAGCGGGGGGATCTCAAAACAATTAGTgg       >  1:3076954/1‑35 (MQ=255)
                             ccccccGAGCGGGGGGATCTCAAAACAATTAGTgg       >  1:2081854/1‑35 (MQ=255)
                             acccccgcccgtcagggcggttgtcatatggagta       <  1:4623038‑M1/34‑29 (MQ=255)
                              cccccGAGCGGGGGGATCTCAAAACAATTAGTggg      >  1:19644124/1‑35 (MQ=255)
                               cccctgccgcagagaaaaagtctgagttatttttt     <  1:9307513‑M1/35‑32 (MQ=255)
                               ccccGcccgtcagggcggttgtcatatggagtaca     <  1:5335882‑M1/35‑31 (MQ=255)
                               ccccGAGCGGGGTGATCTCAAAATAATTAGTGGGa     >  1:2162982/1‑35 (MQ=37)
                               ccccGAGCGGGGGGATCTCAAAACAATTAGTGGGa     >  1:19230474/1‑35 (MQ=255)
                               ccccGAGCGGGGGGATCTCAAAACAATTAGTGGGa     >  1:20481994/1‑35 (MQ=255)
                                ccctgccgcagagaaaaagtctgagttattttttt    <  1:15307348‑M1/35‑33 (MQ=255)
                                cccgcccgtcagggcggttgtcatatggagtacag    <  1:7352113‑M1/35‑32 (MQ=255)
                                cccgcccgtcagggcggttgtcatatggagtacag    <  1:20309400‑M1/35‑32 (MQ=255)
                                cccGAGCGGGGGGATCTCAAAACAATTAGTGGGAt    <  1:17373286/35‑1 (MQ=255)
                                cccGAGCGGGGGGATCTCAAAACAATTAGTGGGAt    <  1:12080364/35‑1 (MQ=255)
                                cccGAGCGGGGGGATCTCAAAACAATTAGTGGGAt    >  1:6678723/1‑35 (MQ=255)
                                 cctgccgcagagaaaaagtctgagttattttttta   <  1:16782255‑M1/35‑34 (MQ=255)
                                 ccGAGCGGGGGGATCTCAAAACAATTAGTGGGaag   >  1:8883247/1‑33 (MQ=255)
                                 ccGAGCGGGGGGATCTCAAAACAATTAGTGGGAtt   >  1:7611554/1‑35 (MQ=255)
                                 ccGAGCGGGGGGATCTCAAAACAATTAGTGGGAtt   <  1:18346697/35‑1 (MQ=255)
                                 ccGAGCGGGGGGATCTCAAAACAATTAGTGGGAtt   <  1:1948968/35‑1 (MQ=255)
                                  ctgccgcagagaaaaagtctgagttatttttttaa  <  1:16242753‑M1/35‑35 (MQ=255)
                                  ctgccgaagagaaaaagtctgagttatttttttaa  <  1:4935071‑M1/35‑35 (MQ=255)
                                  cGAGCGGGGGGATCTCAAAACAATTAGTGGGATTc  <  1:1554415/35‑1 (MQ=255)
                                  cGAGCGGGGGGATCTCAAAACAATTAGTGGGATTc  <  1:1477725/35‑1 (MQ=255)
                                  |                                  
CAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTC  >  REL606/9869‑9937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.