New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 207313 = | 39 (0.380) | 6 (0.060) | 3/44 | NT | 6.9% | coding (1124/1149 nt) | lpxB | lipid‑A‑disaccharide synthase |
? | REL606 | 1513006 = | 126 (1.340) | coding (3736/3741 nt) | narZ | nitrate reductase 2 (NRZ), alpha subunit |
Only 100 of 112 total aligned reads displayed.
CAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGAGTTAGCACAATGATCGAATTTG > REL606/207279‑207347 | gatgaaggtcgcgatcaggtacaggaggcgaaaaa < 1:2049945‑M1/1‑1 (MQ=255) gatgaaggtcgcgatcaggtacaggaggcgaaaaa < 1:722411‑M1/1‑1 (MQ=255) gatgaaggtcgcgatcaggtacaggaggcgaaaaa < 1:12949656‑M1/1‑1 (MQ=255) gatgaaggtcgcgatcaggtacaggaggcgaaaaa < 1:19503175‑M1/1‑1 (MQ=255) cagATCCGCTGCAATGCCGATGAGCAGGCGGgaca > 1:6373283/1‑35 (MQ=255) cagATCCGCTGCAATGCCGATGAGCAGGCGGcaca < 1:13470203/35‑1 (MQ=255) cagATCCGCTGCAATGCCGATGAGCAGGCGGcaca > 1:794695/1‑35 (MQ=255) cagATCCGCTGCAATGCCGATGAGCAGGCGGcaca > 1:8854558/1‑35 (MQ=255) cagATCAGCTGCAATGCCGATGAGCAGGCGGcaca < 1:10960887/35‑1 (MQ=255) atgaaggtcgcgatcaggtacaggaggcgaaaaaa < 1:10212491‑M1/2‑1 (MQ=255) atgaaggtcgcgatcaggtacaggaggcgaaaaaa > 1:14460962‑M1/34‑35 (MQ=255) atgaaggtcgcgatcaggtacaggaggcgaaaaaa > 1:17136810‑M1/34‑35 (MQ=255) agATCCGCTGCAATGCCGATGAGCAGGCGGCACaa < 1:1309814/35‑1 (MQ=255) agATCCGCTGCAATGCCGATGAGCAGGCGGCACaa > 1:17747614/1‑35 (MQ=255) agATCCGCTGCAATGCCGATGAGCAGGCGGCACaa < 1:1939169/35‑1 (MQ=255) gATCCGCTGCAATGCCGATGAGCAGGCGGCACAAg > 1:7402859/1‑35 (MQ=255) acccGCTGCAATGCCGATGAGCAGGCGGCACAAGc < 1:403723/33‑1 (MQ=255) aTCCGCTGCAATGCCGATGAGCGGGCGGCACAAGc < 1:8838449/35‑1 (MQ=255) aTCCGCTGCAATGCCGATGAGCAGGCGGGCCAAgg > 1:20008073/1‑34 (MQ=25) aTCCGCTGCAATGCCGATGAGCAGGCGGGACaaac > 1:11408065/1‑33 (MQ=37) aTCCGCTGCAATGCCGATGAGCAGGCGGGACAAGc > 1:5557859/1‑35 (MQ=255) aTCCGCTGCAATGCCGATGAGCAGGCGGCACAAGc < 1:19793043/35‑1 (MQ=255) aTCCGCTGCAATGCCGATGAGCAGGCGGCACAAGc < 1:1661941/35‑1 (MQ=255) aTCCGCTGCAATGCCGATGAGCAGGCGGCACAAGc < 1:826734/35‑1 (MQ=255) aTCCGCTGCAATGCCGATGAGCAGGCGGCACAAGc < 1:6618640/35‑1 (MQ=255) aTCCGCTGCAAGGCCGATGAGCAGGCGGCACAAGc < 1:767533/35‑1 (MQ=255) tCCGCTGCAATGCCTATGAGCAGGCGGGACAAgac > 1:18568104/1‑33 (MQ=37) tCCGCTGCAATGCCGATGAGCAGGCGGCACAAGcc > 1:7713470/1‑35 (MQ=255) tCCGCTGCAATGCCGATGAGCAGGCGGCACAAGcc < 1:8962488/35‑1 (MQ=255) cccGCTGCAATGCCGATGAGCAGGCGGCACAAGcc < 1:8250425/34‑1 (MQ=255) cccGCTGCAATGCCGATGAGCAGGCGGCACAAGcc < 1:7750394/34‑1 (MQ=255) ccGCTGCAATGCCGATGAGCAGGCGGCACAAACCg > 1:4482513/1‑35 (MQ=255) cGCTGCAATGCCGATGAGCAGGCGGCACAAGCCgg > 1:4439324/1‑34 (MQ=255) cGCTGCAATGCCGATGAGCAGGCGGCACAAGCCgg > 1:15762220/1‑34 (MQ=255) gCTGCAATGCCGATGAGCAGGCGGCACAAGCCggt > 1:4977350/1‑33 (MQ=255) gCTGCAATGCCGATGAGCAGGCGGCACAAGCCGtt > 1:13632954/1‑35 (MQ=255) gCTGCAATGCCGATGAGCAGGCGGCACAAGCCGtt > 1:8061549/1‑35 (MQ=255) cTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTc > 1:18780951/1‑35 (MQ=255) tGCAATGCCGATGAGCAGGCGGCACAAGCCGGTCt > 1:19974532/1‑35 (MQ=255) gCAATGCCGATGAGCAGGCGGCACAAGCCGTGCTg > 1:4039659/1‑35 (MQ=255) aaTGCCGATGAGCAGGCGGCACAAGCCGTTCTggg > 1:20322757/1‑34 (MQ=255) aaTGCCGATGAGCAGGCGGCACAAGCCGTTCTGGa > 1:223619/1‑35 (MQ=255) aaTGCCGATGAGCAGGCGGCACAAGCCGGTCTGGa > 1:6383938/1‑35 (MQ=255) gCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGtt > 1:10703134/1‑35 (MQ=255) ccGATGAGCAGGCGTCACAAGCCGTTCTGGAGTTa > 1:20139484/1‑35 (MQ=255) ccGATGAGCAGGCGGCACAAGCCGTTTTTGAGTTa > 1:19126499/1‑35 (MQ=37) ccGATGAGCAGGCGGCACAAGCCGGTCTGGGGTTa > 1:1828792/1‑35 (MQ=37) cGATGAGCATGCGGCACAAGCCGTTCTGGAGTTAg > 1:6120631/1‑35 (MQ=255) cGATGAGCAGGCGGCACAAGCCGGTCTGGAGTTAg > 1:12676011/1‑35 (MQ=255) gATGAGCAGGCGGCACAAGCCGTTCTGGAGTTAGc > 1:19260240/1‑35 (MQ=255) aTGAGCAGGCGGCACAAGCCGTTCTGGAGTTAGca > 1:19889963/1‑35 (MQ=255) ggAGCGGGCGGCAAAAGCCGTTCTGGAGTTAGcac < 1:3538330/34‑1 (MQ=25) gAGCGGGCGACAAAAGCCGTTCTGGAGTTAGcaca < 1:7948125/35‑1 (MQ=25) gAGCAGGCGGCACAAGCCGGTCTGGGGTTAGcaca > 1:1831920/1‑35 (MQ=37) agggggcgaaaaAAGCCGTTCTGGAGTTAGCACaa > 1:8057240‑M1/13‑35 (MQ=255) aggaggcgaaaaAAGCCGTTCTGGAGTTAGCACaa > 1:4884831‑M1/13‑35 (MQ=255) aGCAGGCGGCACAAGCCGTTCTGGAGTTAGCACaa > 1:1360464/1‑35 (MQ=255) aGCAGGCGGCACAAGCCGTTCTGGAGTTAGCACaa > 1:3659727/1‑35 (MQ=255) aGCAGGCGGAAAAAGCCGTTCTGGAGTTAGCACaa < 1:17998956/35‑1 (MQ=37) ggaggcgaaaaAAGCCGTTCTGGAGTTAGCACAAt > 1:8913412‑M1/12‑35 (MQ=255) gcgggcgacAAAAGCCGTTCTGGAGTTAGCACAAt < 1:3689342/32‑1 (MQ=25) cgggcgaaaaAAGCCGTTCTGGAGTTAGCACAATg > 1:18857585‑M1/11‑35 (MQ=255) cAGGCGGCACAAGCCGTTCTGGAGTTAGCACAATg > 1:5826021/1‑35 (MQ=255) aggcggaaaAAGCCGTTCTGGAGTTAGCACAATGa > 1:8103527‑M1/10‑35 (MQ=255) aGGCTGCACAAGCCGTTCTGGAGTTAGCACAATGa > 1:15513495/1‑35 (MQ=255) aGGCGGCACAAGCCGTTCTGGAGTTAGCACAATGa > 1:10652079/1‑35 (MQ=255) aGGCGGCACAAGCCGTTCTGGAGTTAGCACAATGa > 1:18103023/1‑35 (MQ=255) aGGCGGCACAAGCCGTTCTGGAGTTAGCACAATGa > 1:11253711/1‑35 (MQ=255) gcggcAAAAGCCGTTCTGGAGTTAGCACAATGATc < 1:12018831/35‑1 (MQ=255) cggcACAAGCCGTTCTGGAGTTAGCACAATGATCg > 1:1236951/1‑35 (MQ=255) cggcAAAAGCCGTTCTGGAGTTAGCACAATGATCg < 1:11406713/35‑1 (MQ=255) ggcaaAAGCCGTTCTGGAGTTAGCACAATGATCGa > 1:11993897‑M1/6‑35 (MQ=255) gcaaaAAGCCGTTCTGGAGTTAGCACAATGATCGa > 1:5096569‑M1/6‑35 (MQ=255) gacaaAAGCCGTTCTGGAGTTAGCACAATGATCGa > 1:10467552‑M1/6‑35 (MQ=255) gaaaaAAGCCGTTCTGGAGTTAGCACAATGATCGa > 1:6461776‑M1/6‑35 (MQ=255) agaaaAAGCCGTTCTGGAGTTAGCACAATGATCGa > 1:14492731‑M1/6‑35 (MQ=255) aacaaAAGCCGTTCTGGAGTTAGCACAATGATCGa > 1:8901435‑M1/6‑35 (MQ=255) gaaaAAGCCGTTCTGGAGTTAGCACAATGATCGaa > 1:20510204‑M1/5‑35 (MQ=255) cacaAGCCGTTCTGGAGTTAGCACAATGATCGAAt > 1:15405639/1‑35 (MQ=255) caaAAGCCGTTCTGGAGTTAGCACAATGATCGAAt > 1:9332335‑M1/4‑35 (MQ=255) caaAAGCCGTTCTGGAGTTAGCACAATGATCGAAt > 1:5892523‑M1/4‑35 (MQ=255) caaAAGCCGTTCTGGAGTTAGCACAATGATCGAAt > 1:17642388‑M1/4‑35 (MQ=255) acaAGCCGTTCTGGAGTTAGCACAATGATCGAAtt > 1:15820618/1‑35 (MQ=255) aaAAGCCGTTCTGGAGTTAGCACAATGATCGAAtt > 1:11131682‑M1/3‑35 (MQ=255) aaAAGCCGTTCTGGAGTTAGCACAATGATCGAAtt > 1:19705773‑M1/3‑35 (MQ=255) caAGCCGTTCTGGAGTTAGCATAATGATCGAAttt > 1:11309712/1‑35 (MQ=255) caAGCCGTTCTGGAGTTAGCACAATGATCGAAttt > 1:116105/1‑35 (MQ=255) aAAGCCGTTCTGGAGTTAGCACAATGATCGAAttt > 1:5495060‑M1/2‑35 (MQ=255) aAAGCCGTTCTGGAGTTAGCACAATGATCGAAttt > 1:9035626‑M1/2‑35 (MQ=255) aAAGCCGTTCTGGAGTTAGCACAATGATCGAAttt > 1:13525798‑M1/2‑35 (MQ=255) AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg < 1:10000716‑M1/35‑1 (MQ=255) AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg > 1:10408308‑M1/1‑35 (MQ=255) AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg < 1:12775780‑M1/35‑1 (MQ=255) AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg < 1:13699857‑M1/35‑1 (MQ=255) AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg > 1:19489853‑M1/1‑35 (MQ=255) AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg > 1:7976743‑M1/1‑35 (MQ=255) AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg < 1:20066925‑M1/35‑1 (MQ=255) AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg > 1:2736980‑M1/1‑35 (MQ=255) AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg > 1:3282551‑M1/1‑35 (MQ=255) AAGCCGTTCTGGAGTTAGCACAATGATCGAATTTg > 1:6331394‑M1/1‑35 (MQ=255) | CAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGAGTTAGCACAATGATCGAATTTG > REL606/207279‑207347 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |