New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1087708 = | 57 (0.550) | 7 (0.090) | 3/36 | NT | 11.8% | coding (342/801 nt) | ycdJ | predicted hydrolase |
? | REL606 | = 1145443 | 62 (0.800) | intergenic (‑8/‑147) | flgA/flgB | flagellar basal body P‑ring biosynthesis protein A/flagellar basal‑body rod protein B |
Only 100 of 182 total aligned reads displayed.
CGCCACGCTACGTTTTATTATCAGCATTTTCGCCCCCAGCCATTTCTACAACGTGAATTGTACCTGTCC > REL606/1145409‑1145477 | cGCCACGCTACGTTTTATTATCAGCATTTTCGccc > 1:248577/1‑35 (MQ=255) gCCACGCTACGTTTTATTATCAGCATTTTCGCCCc < 1:19051556‑M2/35‑2 (MQ=255) gCCACGCTACGTTTTATTATCAGCATTTTCGCCCc > 1:437840‑M2/1‑34 (MQ=255) ccACGCTACGTTTTATTATCAGCATTTTCGCCCCC > 1:19930627‑M1/1‑35 (MQ=255) ccACGCTACGTTTTATTATCAGAATCTTCGcaccc > 1:2917652/1‑35 (MQ=25) cACGCTACGTTTTATTATCAGCATTTTCGCCCCCA < 1:18979981‑M1/35‑1 (MQ=255) cACGCTACGTTTTATTATCAGCATTTTCGCCCCCA > 1:15692998‑M1/1‑35 (MQ=255) aCGCTACGTTTTATTATCAGCATTTTCGCCCCCAG > 1:6786419‑M1/1‑35 (MQ=255) aCGCTACGTTTTATTATCAGCATTTTCGCCCCCAG > 1:14460504‑M1/1‑35 (MQ=255) aCGCTACGTTTTATTATCAGCATTTTCGCCCCCAG < 1:1413090‑M1/35‑1 (MQ=255) aCGCTACGTTTTATTATCAGCATTTTCGACCCCAG < 1:5705020‑M1/35‑1 (MQ=255) cGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC > 1:175815‑M1/1‑35 (MQ=255) cGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC > 1:7414008‑M1/1‑35 (MQ=255) cGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC > 1:11239937‑M1/1‑35 (MQ=255) cGCTACGTTTTATTATCAGCATTTTCGCCCCCAGC > 1:14149553‑M1/1‑35 (MQ=255) gCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC > 1:5609996‑M1/1‑35 (MQ=255) gCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC < 1:8742543‑M1/35‑1 (MQ=255) gCTACGTTTTATTATCAGCATTTTCGCCCCCAGCC < 1:3832916‑M1/35‑1 (MQ=255) cTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA < 1:4074734‑M1/35‑1 (MQ=255) cTACGTTTTATTATCAGCATTTTCGCCCCCAGCCA < 1:8261194‑M1/35‑1 (MQ=255) tACGTTTTATTATCAGCATTTTCGCCCCCAGCCAt > 1:4785092/1‑35 (MQ=255) tACGTTTTATTATCAGCATTTTCGCCCCCAGCCAt > 1:3522486/1‑35 (MQ=255) tACGTTTTATTATCAGCATTTTCGCCCCCAGCCAt > 1:9095988/1‑35 (MQ=255) aCGTTTTATTATCAGCATTTTCGCCCCCAGCCAtt > 1:19587935/1‑35 (MQ=255) cGTTTTATTATCAGCATTTTCGCCCCCAGCCAttt > 1:11619776/1‑35 (MQ=255) cGTTTTATTATCAGCATTTTCGCCCCCAGCCAttt > 1:7350873/1‑35 (MQ=255) cGTTTTATTATCAGCATTTTCGCCCCCAGCCAttt < 1:2623147/35‑1 (MQ=255) tttATTATCAGCATTTTCGCCCCCAGCCATTTCTa > 1:17671952/1‑35 (MQ=255) tttATTATCAGCATTTTACCCCCCAGCCATTTCTa < 1:11091590/35‑1 (MQ=38) ttattaTCAGCATTTTCGCCCCCAGCCATTTCTAc > 1:10232036/1‑35 (MQ=255) tattatCAGCATTTTCGCCCCCAGCCATTTCTACa > 1:12191821/1‑35 (MQ=255) attatCAGCATTTTCGCCCCCAGCCATTTCTACaa > 1:7772727/1‑35 (MQ=255) attatCAGCATTTTCGCCCCCAGCCATTTCTACaa > 1:13278833/1‑35 (MQ=255) ttatCAGCATTTTCGCCCCCAGCCATTTCTACAAc > 1:7484073/1‑35 (MQ=255) ttatCAGCATTTCCCCCCCCAGCCATTTCTACAAc < 1:9981475/35‑1 (MQ=38) tatCAGCATTTTCGCCCCCAGCCATTTCTACAACg > 1:6595293/1‑35 (MQ=255) atCAGCATTTTCGCCCCCAGCCATTTCTACAACGt > 1:20391625/1‑35 (MQ=255) atCAGCATTTTCGCCCCCAGCCATTTCTACAACGt > 1:14915940/1‑35 (MQ=255) atCAGCATTTTCCCCCCCAGCCATTTCTACAACGt < 1:12062374/35‑1 (MQ=255) atCAACATTTCCCCCCCCAGCCATTTCTACAACGt < 1:3297743/35‑1 (MQ=25) tCAGCATTTTCGCCCCCAGCAATTTCTACAACGTg < 1:16938931/35‑1 (MQ=255) cAGCATTTTCGCCCCCAGCCATTTCTACAACGTGa > 1:19236409/1‑35 (MQ=255) cAGCATTTTCGCCCCCAGCCATTTCTACAACGTGa > 1:2317135/1‑35 (MQ=255) cAGCATTTTCGCCCCCAGCCATTTCTACAACGTGa > 1:3811512/1‑35 (MQ=255) cAGCATTTTCGCCCCCAGCCATTTCTACAACGTGa > 1:10660707/1‑35 (MQ=255) aGCATTTTCGCCCCCAGCCATTTCTACAACGTGaa > 1:13177172/1‑35 (MQ=255) gCATTTTCGCCCCCAGCCATTTCTACAACGTGAAt > 1:80549/1‑35 (MQ=255) gcttttcgCCCCCAGCCAcaggtcgagatgaccag < 1:2976972‑M1/33‑18 (MQ=255) cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt > 1:17343553/1‑35 (MQ=255) cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt > 1:10439596/1‑35 (MQ=255) cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt > 1:2062644/1‑35 (MQ=255) cATTTTCGCCCCCAGCCATTTCTACAACGTGAAtt > 1:452773/1‑35 (MQ=255) tttttcCCCCCCAGCCAcaggtcgagatgaccagc < 1:18138525‑M1/34‑19 (MQ=255) aTTTTCGCCCCCAGCCATTTCTACAACGTGAATTg > 1:12446847/1‑35 (MQ=255) aTTTTCGCCCCCAGCCATTTCTACAACGTGAATTg > 1:7930241/1‑35 (MQ=255) aTTTTCGCCCCCAGCCATTTCTACAACGTGAATTg > 1:9642530/1‑35 (MQ=255) aTTTTCCCCCCCAGCCATTTCTACAACGTGAATTg < 1:10011342/35‑1 (MQ=255) tttCGCCCccagccgttaacgctgatcagcacagt > 1:9477507‑M2/1‑8 (MQ=255) tttCGCCCCCAGGCATTTCTACAACGTGAATTGTa > 1:7679027/1‑35 (MQ=255) tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa < 1:6757330/35‑1 (MQ=255) tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa < 1:6395315/35‑1 (MQ=255) tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa > 1:20470900/1‑35 (MQ=255) tttCGCCCCCAGCCATTTCTACAACGTGAATTGTa > 1:5705592/1‑35 (MQ=255) tttCCCCCccagccgttaacgctgatcagcacagt > 1:2198900‑M2/1‑8 (MQ=255) tttCCCCCCCAGCCATTTCTACAACGTGAATTGTa < 1:4965950/35‑1 (MQ=255) ttCGCCCccagccgttaacgctgatcagcacagtt > 1:1103353‑M2/1‑7 (MQ=255) ttCGACCccagccgttaacgctgatcagcacagtt > 1:5736915‑M2/1‑7 (MQ=255) ctcGCCCCCAGCCAcaggtcgagatgaccagcggt < 1:9844940‑M1/34‑22 (MQ=255) tcccccccagcCAcaggtcgagatgaccagcggta < 1:15258991‑M1/32‑23 (MQ=255) tCGCCCCCAGCCATTTCTACAACGTGAATTGTAcc > 1:18371799/1‑35 (MQ=255) tCGCCCCCAGCCATTTCTACAACGTGAATTGTAcc > 1:12225420/1‑35 (MQ=255) ccccccccAGCCATTTCTACAACGTGAATTGTAcc < 1:19434045/32‑1 (MQ=255) cNCCCCCAGCCATTTCTACAACGTGAATTGTACCn < 1:19891166/35‑1 (MQ=255) cGTCCccagccgttaacgctgatcagcacagttac > 1:17940490‑M2/1‑5 (MQ=255) cGCTCCCAGCCAcaggtcgagatgaccagcggtaa < 1:5267305‑M1/35‑24 (MQ=255) cGCCCccagccgttaacgctgatcagcacagttac > 1:5449062‑M2/1‑5 (MQ=255) cGCCCCCAGCCATTTCTACAACGTGAATTGTACCt > 1:14585632/1‑35 (MQ=255) cGCCCCAAGCCATTTCTACAACGTGAATTGTACCt < 1:3214409/35‑1 (MQ=255) gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg > 1:16648800/1‑35 (MQ=255) gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg > 1:14220466/1‑35 (MQ=255) gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg > 1:19956199/1‑35 (MQ=255) gCCCCCAGCCATTTCTACAACGTGAATTGTACCTg < 1:9565394/35‑1 (MQ=255) ccccccaGCCAcaggtcgagatgaccagcggtaaa < 1:9341412‑M1/34‑25 (MQ=255) ccccccAGCCATTTCTACAACGTGAATTGTACCTg < 1:16884693/34‑1 (MQ=255) ccccccAGCCATTTCTACAACGTGAATTGTACCTg < 1:16408565/34‑1 (MQ=255) acccccaGCCAcaggtcgagatgaccagcggtaaa < 1:10148076‑M1/34‑25 (MQ=255) gccccagccgttaacgctgatcagcacagttaccg > 1:7605655‑M2/2‑3 (MQ=255) cccccAGCCAcaggtcgagatgaccagcggtaaac < 1:4234132‑M1/35‑26 (MQ=255) cccccAGCCAcaggtcgagatgaccagcggtaaac < 1:8867781‑M1/35‑26 (MQ=255) cccccAGCCAcaggtcgagatgaccagcggtaaac < 1:11272368‑M1/35‑26 (MQ=255) cccccAGCCAcaggtcgagatgaccagcggtaaac < 1:8329763‑M1/35‑26 (MQ=255) cccccAGCCATTTCTACAACGTGAATTGTACCTGt < 1:14931954/35‑1 (MQ=255) accccagccgttaacgctgatcagcacagttaccg > 1:12949014‑M2/2‑3 (MQ=255) ccccagccgttaacgctgatcagcacagttaccga > 1:8461431‑M2/1‑2 (MQ=255) ccccagccgttaacgctgatcagcacagttaccga > 1:16129658‑M2/1‑2 (MQ=255) ccccAGCCAcaggtcgagatgaccagcggtaaact < 1:8356968‑M1/35‑27 (MQ=255) ccccAGCCAcaggtcgagatgaccagcggtaaact < 1:16577309‑M1/35‑27 (MQ=255) cccAGCCATTTCTACAACGTGAATTGTACCTGTcc < 1:3670443/35‑1 (MQ=255) cccAGCCATTTCTACAACGTGAATTGTACCTGTcc < 1:2271009/35‑1 (MQ=255) cccAGCCATTTCTACAACGTGAATTGTACCTGTcc < 1:2542095/35‑1 (MQ=255) | CGCCACGCTACGTTTTATTATCAGCATTTTCGCCCCCAGCCATTTCTACAACGTGAATTGTACCTGTCC > REL606/1145409‑1145477 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |