New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422127 =69 (0.670)8 (0.120) 4/32 NT 15.8% coding (187/948 nt) cyoA cytochrome o ubiquinol oxidase subunit II
?REL606 4480474 = 39 (0.570)coding (497/1191 nt) intB predicted integrase

Only 100 of 117 total aligned reads displayed.

TTAATTGATTATAACCCGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTGTAATCGACAACATCGTCCC  >  REL606/4480440‑4480508
                                  |                                  
ttgattgtcgttattcccgcaatcttgatggctgg                                    >  1:16716276‑M2/35‑35 (MQ=255)
ttgattgtcgttattcccgcaatcttgatggctgg                                    >  1:6552802‑M2/35‑35 (MQ=255)
ttgattgtcgttattcccgcaatcttgatggctgg                                    >  1:659408‑M2/35‑35 (MQ=255)
ttgattgtcgttattcccgcaatcttgatggctgg                                    >  1:15279353‑M2/35‑35 (MQ=255)
ttgattgtcgttattcccgcaatcttgatggctgg                                    >  1:442479‑M2/35‑35 (MQ=255)
ttgattgtcgttattcccgcaatcttgatggctgg                                    >  1:10315029‑M2/35‑35 (MQ=255)
ttAATTGTTTATAACCCGGCACAAGAGATGGCTgg                                    >  1:766521/1‑35 (MQ=255)
ttAATTGATTATAACCCGGCACAAGAGATGGCTgg                                    >  1:18059636/1‑35 (MQ=255)
ttAATTGATTATAACCCGGCACAAGAGATGGCTgg                                    >  1:4933825/1‑35 (MQ=255)
ttAATTGATTATAACCCGGCACAAGAGATGGCTgg                                    <  1:1847484/35‑1 (MQ=255)
ttAATTGATTATAACCCGGCACAAGAGATGGCTgg                                    >  1:14838447/1‑35 (MQ=255)
 tgattgtcgttattcccgcaatcttgatggctggg                                   >  1:6236969‑M2/34‑35 (MQ=255)
 tgattgtcgttattcccgcaatcttgatggctggg                                   >  1:13461869‑M2/34‑35 (MQ=255)
 tAATTGATTATAACCCGGCACAAGAGATGGCTggg                                   <  1:13995414/35‑1 (MQ=255)
 tAATTGATTATAACCCGGCACAAGAGATGGCTggg                                   >  1:15854705/1‑35 (MQ=255)
 tAATTGATTATAACCCGGCACAAGAGATGGCTggg                                   <  1:877238/35‑1 (MQ=255)
 tAATTGATTATAACCCGGCACAAGAGATGGCTggg                                   <  1:12410968/35‑1 (MQ=255)
  gattgtcgttattcccgcaatcttgatggctgggg                                  >  1:11324810‑M2/33‑35 (MQ=255)
  gattgtcgttattcccgcaatcttgatggctgggg                                  >  1:10895186‑M2/33‑35 (MQ=255)
  gattgtcgttattcccgcaatcttgatggctgggg                                  >  1:15346050‑M2/33‑35 (MQ=255)
  aaTTGATTATAACCCGGCACAAGAGATGGCTgggg                                  >  1:3012107/1‑35 (MQ=255)
  aaTTGATTATAACCCGGCACAAGAGATGGCTgggg                                  <  1:20175251/35‑1 (MQ=255)
  aaTTGATTATAACCCGGCACAAGAGATGGCTgggg                                  >  1:2652639/1‑35 (MQ=255)
   attgtcgttattcccgcaatcttgatggctggggg                                 >  1:3343076‑M2/32‑34 (MQ=255)
   attgtcgttattcccgcaatcttgatggctggggg                                 >  1:16785081‑M2/32‑34 (MQ=255)
   attgtcgttattcccgcaatcttgatggctggggg                                 >  1:18384973‑M2/32‑34 (MQ=255)
   attgtcgttattcccgcaatcttgatggctggggg                                 >  1:19136938‑M2/32‑34 (MQ=255)
   attgtcgttattcccgcaatcttgatggctggggg                                 >  1:5742913‑M2/32‑34 (MQ=255)
   attgtcgttattcccgcaatcttgatggctggggg                                 >  1:2749446‑M2/32‑34 (MQ=255)
   attgtcgttattcccgcaatcttgatggctggggg                                 >  1:15233919‑M2/32‑34 (MQ=255)
   attgtcgttattcccgcaatcttgatggctggggg                                 >  1:15392298‑M2/32‑34 (MQ=255)
   aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc                                 <  1:12858836/35‑1 (MQ=255)
   aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc                                 <  1:18853336/35‑1 (MQ=255)
   aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc                                 <  1:5548662/35‑1 (MQ=255)
   aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc                                 >  1:14691034/1‑35 (MQ=255)
   aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc                                 >  1:9788541/1‑35 (MQ=255)
   aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc                                 >  1:1629264/1‑35 (MQ=255)
   aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc                                 <  1:1554545/35‑1 (MQ=255)
   aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc                                 >  1:16895684/1‑35 (MQ=255)
    ttgtcgttattcccgcaatcttgatggctgggggg                                >  1:2641005‑M2/31‑33 (MQ=255)
    ttgtcgttattcccgcaatcttgatggctgggggg                                >  1:6131121‑M2/31‑33 (MQ=255)
    ttgtcgttattcccgcaatcttgatggctgggggg                                >  1:1885167‑M2/31‑33 (MQ=255)
    ttgtcgttattcccgcaatcttgatggctgggggg                                >  1:2950493‑M2/31‑33 (MQ=255)
    ttgtcgttattcccgcaatcttgatggctgggggg                                >  1:8680921‑M2/31‑33 (MQ=255)
    ttGATTATAACCCGGCACAAGAGATGGCTGGGGCg                                >  1:5935739/1‑35 (MQ=255)
     tgtcgttattcccgcaatcttgatggctggggggt                               >  1:18563728‑M2/30‑32 (MQ=255)
     tgtcgttattcccgcaatcttgatggctggggggt                               >  1:16350274‑M2/30‑32 (MQ=255)
     tGATTATAACCCGGCACAAGAGATGGCTGGGGCgg                               >  1:3866138/1‑35 (MQ=255)
     tGATTATAACCCGGCACAAGAGATGGCTGGGGCgg                               >  1:5628358/1‑35 (MQ=255)
     tGATTATAACCCGGCACAAGAGATGGCTGGGGCgg                               >  1:2391644/1‑35 (MQ=255)
      gtcgttattcccgcaatcttgatggctgGGGGGGt                              >  1:8049433‑M2/29‑35 (MQ=255)
      gATTATAACCCGGCACAAGAGATGGCTGGGTCggg                              >  1:3005936/1‑34 (MQ=255)
      gATTATAACCCGGCACAAGAGATGGCTGGGGCggg                              >  1:11804331/1‑34 (MQ=255)
      gATTATAACCCGGCACAAGAGATGGCTGGGGCggg                              >  1:16127759/1‑34 (MQ=255)
      gATTATAACCCGGCACAAGAGATGGCTGGGGCGGt                              <  1:19642361/35‑1 (MQ=255)
       tcgttattcccgcaatcttgatggctgGGGGGgtg                             >  1:9780545‑M2/28‑34 (MQ=255)
       tcgttattcccgcaatcttgatggctgGGGGGGtt                             >  1:20179805‑M2/28‑35 (MQ=255)
       tcgttattcccgcaatcttgatggctgGGGGGGtt                             >  1:3376620‑M2/28‑35 (MQ=255)
       aTTATAACCCGGCACAAGAGATGGCTGGGGCGGtt                             <  1:11996551/35‑1 (MQ=255)
       aTTATAACCCGGCACAAGAGATGGCTGGGGCGGtt                             <  1:9076289/35‑1 (MQ=255)
        ttATAACCCGGCACAAGAGATGGCTGGGGCggggg                            >  1:14942651/1‑32 (MQ=255)
        ttATAACCCGGCACAAGAGATGGCTGGGGCggggg                            >  1:17880239/1‑32 (MQ=255)
        ttATAACACGGCACAAGAGATGGCTGGGGCGGTTg                            <  1:5319010/35‑1 (MQ=255)
        cgttattcccgcaatcttgatggctgGGGGGGTTg                            >  1:616367‑M2/27‑35 (MQ=255)
         tataACCCGGCACAAGAGATGGCTTGGGCGGGTgg                           >  1:10377348/1‑34 (MQ=37)
         gttattcccgcaatcttgatggctgGGGGGGTTGc                           >  1:15946991‑M2/26‑35 (MQ=255)
         gttattcccgcaatcttgatggctgGGGGGGTTGc                           >  1:16715812‑M2/26‑35 (MQ=255)
          ataACCCGGCACAAGAGATGGCTGGGGCGGTTGCt                          <  1:6071869/35‑1 (MQ=255)
          ataACCCGGCACAAGAGATGGCTGGGGCGGTTGCt                          <  1:17933398/35‑1 (MQ=255)
           taACCCGGCACAAGAGATGGCTGGGGCGGTTGCtt                         <  1:2640555/35‑1 (MQ=255)
           taACCCGGCACAAGAGATGGCTGGGGCGGTTGCtt                         <  1:19667356/35‑1 (MQ=255)
            aaCCCGGCACAAGAGATGGCTGGGGCGGTTGCTTc                        <  1:5554282/35‑1 (MQ=255)
            aaCCCGGCACAAGAGATGGCTGGGGCGGTTGCTTc                        <  1:20375063/35‑1 (MQ=255)
            aaCCCGGCACAAGAGATGGCTGGGGCGGTTGCTTc                        <  1:907347/35‑1 (MQ=255)
              cccGGCACAAGAGATGGCTGGGGCGGTTGCTTCCt                      <  1:10952190/35‑1 (MQ=255)
              cccGGCACAAGAGATGGCTGGGGCGGTTGCTTCCt                      <  1:18666876/35‑1 (MQ=255)
               ccGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTg                     <  1:2435200/35‑1 (MQ=255)
               ccGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTg                     <  1:18795671/35‑1 (MQ=255)
               ccGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTg                     <  1:8630551/35‑1 (MQ=255)
                cGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTGt                    <  1:457814/35‑1 (MQ=255)
                cGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTGt                    <  1:13676252/35‑1 (MQ=255)
                   cacaAGAGATGGCTGGGGCGGTTGCTTCCTGTAAt                 <  1:10148065/35‑1 (MQ=255)
                   cacaAGAGATGGCTGGGGCGGTTGCTTCCTGTAAt                 <  1:9587706/35‑1 (MQ=255)
                   cacaAGAGATGGCTGGGGCGGTTGCTTCCTGTAAt                 <  1:4552201/35‑1 (MQ=255)
                   cacaAGAGATGGCTGGGGCGGTTGCTTCCTGTAAt                 <  1:4369954/35‑1 (MQ=255)
                   cacaAGAGATGGCTGGGGCGGTTGCTTCCTGTAAt                 <  1:5945180/35‑1 (MQ=255)
                   cacaAGAGATGGCTGGGGCGGTTGCTTCCTGTAAt                 <  1:19365591/35‑1 (MQ=255)
                       agagATGGCTGGGGCGGTTGCTTCCTGTAATCGac             <  1:8125972/35‑1 (MQ=255)
                        gagaTGGCTGGGGCGGTTGCTTCCTGTAATCGaca            <  1:4078946/35‑1 (MQ=255)
                        gagaTGGCTGGGGCGGTTGCTTCCTGTAATCGaca            <  1:15768922/35‑1 (MQ=255)
                        gagaTGGCTGGGGCGGTTGCTTCCTGTAATCGaca            <  1:6302908/35‑1 (MQ=255)
                            tggctgGGGCGGTTGCTTCCTGTAATCGACAACAt        <  1:1872209‑M2/29‑1 (MQ=255)
                            tggctgGGGCGGTTGCTTCCTGTAATCGACAACAt        <  1:6692275‑M2/29‑1 (MQ=255)
                            tggctgGGGCGGTTGCTTCCTGTAATAGACAACAt        <  1:1435247‑M2/29‑1 (MQ=255)
                             ggctgGGGCGGTTGCTTCCTGTAATAGACAACATc       <  1:11065160‑M2/30‑1 (MQ=255)
                              gctgGGGCGGTTGCTTCCTGTAATCGACAACATCg      <  1:13848248‑M2/31‑1 (MQ=255)
                              gctgGGGCGGTTGCTTACTGTAATCGACAACATCg      <  1:7191091‑M2/31‑1 (MQ=255)
                               ctgGGGCGGTTGCTTCCTGTAATCGACAACATCGt     <  1:7134872‑M2/32‑1 (MQ=255)
                               ctgGGGCGGTTGCTTCCTGTAATCGACAACATCGt     <  1:12637170‑M2/32‑1 (MQ=255)
                                  gggCGGTTGCTTCCTGTAATCGACAACATCGTccc  >  1:15614280/1‑35 (MQ=255)
                                  |                                  
TTAATTGATTATAACCCGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTGTAATCGACAACATCGTCCC  >  REL606/4480440‑4480508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.