New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1054933 | 86 (0.840) | 11 (0.120) | 4/44 | NT | 9.8% | coding (103/1545 nt) | appC | cytochrome bd‑II oxidase, subunit I |
? | REL606 | = 3766502 | 123 (1.310) | coding (1206/1206 nt) | gltS | glutamate transporter |
TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1054898‑1054933 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taAAAATGAAAAAGCGTCGGAAGGAACCGGAAACGC < REL606/3766502‑3766469 TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT > 1:9423750/1‑35 TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT > 1:12228791/1‑35 TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT < 1:5338314/35‑1 TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT > 1:4679660/1‑35 TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT > 1:3524121/1‑35 TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT < 1:3277287/35‑1 TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT > 1:16613384/1‑35 TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCT > 1:1820345/1‑35 ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA > 1:11337468/1‑35 ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA > 1:8675965/1‑35 ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA < 1:4665715/35‑1 ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA > 1:1408691/1‑35 ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA < 1:3417765/35‑1 ACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA < 1:3115289/35‑1 CCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTAA > 1:9599160/1‑35 CCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTAA > 1:10285532/1‑35 CCCTTACCCTGGGGCTGATTTTTTTGCTGGCTAAA > 1:13721282/1‑35 CCTTACCCTGGGGCTGATTTTTTTGCTGGCTAAta > 1:2514474/1‑33 CCTTACCCTGGGGCTGATTTTTTTGCTGGCTAAAA > 1:9718308/1‑35 CCTTACCCTGGGGCTGATTTTTTTGCTGGCTAAAA > 1:14733607/1‑35 CTTACCCTGGGGCTGATTTTTTTGCTGGCTAAtat > 1:3194995/1‑32 TTACCCTGGGGCTGATTTTTTTGCTGGCTAAAAta > 1:13794526/1‑33 TACCCTGGGGCTGATTTTTTTGCTGGCTAAAATTG > 1:12004339/1‑35 TACCCTGGGGCTGATTTTTTTGCTGGCTAAAAATa > 1:15394268/1‑34 CCCTGGGGCTGATTTTTTTGCTGGCTAATAATGAA > 1:15561178/1‑35 CCCTGGGGCTGATTTTTTTGCTGGCTAATAATGAA > 1:10422132/1‑35 CCTGGGGCTGATTTTTTTGCTGGCTAATAATGAAA > 1:6001951/1‑35 CCTGGGGCTGATTTTTTTGCTGGCTAAAATTGAAA > 1:16346057/1‑35 CCTGGGGCTGATTTTTTTGCTGGCTAAAATTGAAA > 1:20311894/1‑35 CCTGGGGCTGATTTTTTTGCTGGCTAAAAATGAAA > 1:70090/1‑35 TGGGGCTGATTTTTTTGCTGGCTAAAATTGAAAAc > 1:8033628/1‑34 TGGGGCTGATTTTTTTGCTGGCTAAAAATGAAAAA > 1:6705855/1‑35 GGGGCTGATTTTTTTGCTGGCTAAAAATGAAAAAa > 1:1317822/1‑34 GGGCTGATTTTTTTGCTGGCTAAAAATGAAAAcaa > 1:7677693/1‑32 AAAAATGAAAAAGCGTCGGAAGGAACCGGAAACGC < 1:9044338/35‑1 AAAAATGAAAAAGCGTCGGAAGGAACCGGAAACGC < 1:3987933/35‑1 AAAAATGAAAAAGCGTCGGAAGGAACCGGAAACGC < 1:16745864/35‑1 AAAAATGAAAAAGCGTCGGAAGGAACCGGAAACGC > 1:18044455/1‑35 TACCCCTTACCCTGGGGCTGATTTTTTTGCTGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1054898‑1054933 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taAAAATGAAAAAGCGTCGGAAGGAACCGGAAACGC < REL606/3766502‑3766469 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |