New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 28073259 (0.570)9 (0.120) 3/36 NT 14.3% coding (170/636 nt) yagZ hypothetical protein
?REL606 3006460 = 64 (0.830)coding (470/819 nt) yafZ conserved protein

Only 100 of 164 total aligned reads displayed.

GAGAAAGTTATTGAAGGGGCTTACGAGGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAGCGTGATGCC  >  REL606/3006426‑3006494
                                  |                                  
tctaaaGTTATTGAAGGGGCTTACGAGGTGGTggg                                    <  1:18581998/32‑1 (MQ=255)
gagaAAGTTATTGAAGGGGCTTACGAGGTGGTggg                                    <  1:20465090/35‑1 (MQ=255)
gagaAAGTTATTGAAGGGGCTTACGAGGTGGTggg                                    <  1:5155531/35‑1 (MQ=255)
gagaAAGTTATTGAAGGGGCTTACGAGGTGGGggg                                    >  1:17131004/1‑35 (MQ=255)
gagaAAGTTATTGAAGGGGCTTACGAGGTGGGggg                                    >  1:10979141/1‑35 (MQ=255)
ctaccgagtggcgtcacaaccagcttactggtggg                                    >  1:8935544‑M2/35‑35 (MQ=255)
ctaccgagtggcgtcacaaccagcttactggtggg                                    >  1:17894568‑M2/35‑35 (MQ=255)
 agaAAGTTATTGAAGGGGCTTACGAGGTGGGgggg                                   >  1:3004777/1‑35 (MQ=255)
 agaAAGTTATTGAAGGGGCTTACGAGGAGGGgggg                                   >  1:14576890/1‑35 (MQ=255)
  accgagtggcgtcacaaccagcttactggtggggg                                  >  1:15057575‑M2/33‑35 (MQ=255)
   aaaGTTATTGAAGGGGCTTACGAGGTGGGgggggg                                 >  1:2906190/1‑34 (MQ=255)
   aaaGTTATTGAAGGGGCTTACGAGGTGGGGGGGGt                                 >  1:19171659/1‑35 (MQ=255)
    cgagtggcgtcacaaccagcttactggtggggggt                                >  1:19407746‑M2/31‑33 (MQ=255)
    atttcctgcgcggtcagcgtcAGGTGGTGGGGGtt                                <  1:482906‑M1/14‑1 (MQ=255)
    aaGTTATTGAAGGGGCTTACGAGGTGGTggggggt                                >  1:11353693/1‑33 (MQ=255)
    aaGTTATTGAAGGGGCTTACGAGGTGGTggggggt                                >  1:12716284/1‑33 (MQ=255)
    aaGTTATTGAAGGGGCTTACGAGGTGGTGGGGGtt                                <  1:5845881/35‑1 (MQ=255)
    aaGTTATTGAAGGGGCTTACGAGGTGGTGGGGGtt                                <  1:8478777/35‑1 (MQ=255)
     tttccggcgcggtcagcgtcAGGTGGTGGGGGttt                               <  1:2578947‑M1/15‑1 (MQ=255)
     gagtggcgtcacaaccagcttactggtggGGGgtt                               >  1:9528882‑M2/30‑35 (MQ=255)
     gagtggcgtcacaaccagcttactggtggGGGctt                               >  1:12730413‑M2/30‑35 (MQ=255)
     gagtggcgtcacaaccagcttactggtggGGGctt                               >  1:2549850‑M2/30‑35 (MQ=255)
     aGTTATTGAAGGGGCTTACGAGGTGGTGGGGGttt                               <  1:2074754/35‑1 (MQ=255)
     aGTTATTGAAGGGGCTTACGAGGTGGGGGGGGgtt                               >  1:9453410/1‑35 (MQ=255)
      gTTATTGAAGGGGCTTACGAGGTGGTGGGGGtttt                              <  1:6563745/35‑1 (MQ=255)
      gTTATTGAAGGGGCTTACGAGGTGGTGGGGGtttt                              <  1:10132769/35‑1 (MQ=255)
      agtggcgtcacaaccagcttactggtggGGGgttt                              >  1:20023494‑M2/29‑35 (MQ=255)
       ttATTGAAGGGGCTTACGAGGTGGGGGGGGgtttt                             >  1:3933300/1‑35 (MQ=255)
       gtggcgtcacaaccagcttactggtggGGGttttt                             >  1:8247623‑M2/28‑35 (MQ=255)
       gtggcgtcacaaccagcttactggtggGGGctttt                             >  1:4717955‑M2/28‑35 (MQ=255)
        tATTGAAGGGGCTTACGAGGTGGTGGGGGTTTTTg                            <  1:10168495/35‑1 (MQ=255)
         aTTGAAGGGGCTTACGAGGTGGTGGGGGTTTTTGa                           <  1:5208633/35‑1 (MQ=255)
         aTTGAAGGGGCTTACGAGGTGGTGGGGGTTTTTGa                           <  1:16839129/35‑1 (MQ=255)
         aTTGAAGGGGCTTACGAGGTGGGGGGGGgtttttg                           >  1:4327508/1‑33 (MQ=255)
         aTTGAAGGGGCTTACGAGGTGGGGGGGGGTTTTgt                           >  1:5346896/1‑34 (MQ=255)
          ttGAAGGGGCTTACGAGGTGGTGGGGGTTTTTGAc                          <  1:14601626/35‑1 (MQ=255)
          ttGAAGGGGCTTACGAGGTGGTGGGGGTTTTTGAc                          <  1:20293911/35‑1 (MQ=255)
          ttGAAGGGGCTTACGAGGTGGTGGGGGTTTTTGAc                          <  1:8698085/35‑1 (MQ=255)
          ttGAAGGGGCTTACGAGGTGGGGGGGGGTTTTGAc                          >  1:16455984/1‑35 (MQ=255)
           tGAAGTGGCTTACGAGGTGGGGGGGGGTTTTTAcc                         >  1:14012028/1‑35 (MQ=255)
           tGAAGGGGCTTACGAGGTGGGGGGGGGTTTTTAcc                         >  1:391589/1‑35 (MQ=255)
            gAAGGGGCTTACGAGGTGGTGGGGGTTTTTGACCg                        <  1:8656133/35‑1 (MQ=255)
            gAAGGGGCTTACGAGGTGGTGGGGGGTTTTGACCg                        >  1:11267157/1‑35 (MQ=255)
             aaGGGGCTTACGAGGTGGTGGGGGTTTTTGACCgg                       <  1:11472497/35‑1 (MQ=255)
               ggggCTTACGAGGTGGTGGGGGTTTTTGACCGGAt                     <  1:16408881/35‑1 (MQ=255)
                gggCTTACGAGGTGGTGGGGGTTTTTGACCGGAtt                    <  1:3673350/35‑1 (MQ=255)
                gggCTTACGAGGTGGTGGGGGTTTTTGACCGGAtt                    <  1:10297603/35‑1 (MQ=255)
                gggCTTACGAGGTGGTGGGGGTTTTTGACCGGAtt                    <  1:2779189/35‑1 (MQ=255)
                 ggCTTACGAGGTGGTGGGGGTTTTTGACCGGATTg                   <  1:857933/35‑1 (MQ=255)
                  gCTTACTAGGTGGTGGGGGTTTTTGACCGGATTGa                  >  1:2307052/1‑35 (MQ=255)
                  gCTTACGAGGTGGTGGGGGTTTTTGACCGGATTGa                  <  1:1356722/35‑1 (MQ=255)
                  gCTTACGAGGTGGTGGGGGGTTTTGACCGGATTGa                  >  1:8576373/1‑35 (MQ=255)
                   cTTACGAGGTGGTGGGGGTTTTTGACCGGATTGAg                 <  1:9475039/35‑1 (MQ=255)
                   cTTACGAGGTGGTGGGGGTTTTTGACCGGATTGAg                 >  1:1771377/1‑35 (MQ=255)
                   cTTACGAGGTGGTGGGGGTTTTTGACCGGATTGAg                 <  1:12005466/35‑1 (MQ=255)
                    ttACTAGGTGGTGGGGGTTTTTGACCGGATTGAgg                <  1:18963000/35‑1 (MQ=255)
                     tACGAGGTGGTGGGGGGTTTTGACCGGATTGAGGa               >  1:19157166/1‑35 (MQ=255)
                      aCGAGGTGGTGGGGGTTTTTGACCGGATTGAGGaa              <  1:18312222/35‑1 (MQ=255)
                       cGAGGTGGTGGGGGTTTTTGACCGGATTGAGGaaa             <  1:7887050/35‑1 (MQ=255)
                       cGAGGTGGTGGGGGTTTTTGACCGGATTGAGGaaa             <  1:10471241/35‑1 (MQ=255)
                        gAGGTGGTGGGGGTTTTTGACCGGATTGAGGaaaa            <  1:3369155/35‑1 (MQ=255)
                        gAGGTGGTGGGGGTTTTTGACCGGATCGAGGaaaa            <  1:4266494/35‑1 (MQ=255)
                         AGGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAg           <  1:12425915‑M1/35‑1 (MQ=255)
                         AGGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAg           >  1:10874635‑M1/1‑35 (MQ=255)
                         AGGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAg           >  1:13360686‑M1/1‑35 (MQ=255)
                         AGGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAg           <  1:10350784‑M1/35‑1 (MQ=255)
                         AGGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAg           >  1:15198347‑M1/1‑35 (MQ=255)
                         AGGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAg           >  1:4480962‑M1/1‑35 (MQ=255)
                         AGGTGGTGGGGGTTGTTGACCGGATTGAGGAAAAg           >  1:17330895‑M1/1‑35 (MQ=255)
                         AGGTGGGGGGGGTTTTTGACCGGATTGAGGAAAAg           <  1:19477543‑M1/35‑1 (MQ=255)
                          GGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAGc          >  1:4133989‑M1/1‑35 (MQ=255)
                          GGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAGc          >  1:12916049‑M1/1‑35 (MQ=255)
                          GGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAGc          >  1:18387520‑M1/1‑35 (MQ=255)
                           gtggtgTGGGTTTTTGACCGGATTGAGGAAAAGCg         >  1:13780085/1‑35 (MQ=255)
                           gtggtgGGGGTTTTTGACCGGATTGAGGAAAAGCg         <  1:14240698/35‑1 (MQ=255)
                           gtggtgGGGGTTTTTGACCGGATTGAGGAAAAGCg         <  1:15232432/35‑1 (MQ=255)
                            tggtggGGGTTTTTGACCGGATTGAGGAAAAGCGt        >  1:8160195‑M2/7‑35 (MQ=255)
                            tggtggGGGTTTTTGACCGGATTGAGGAAAAGCGt        <  1:7710718‑M2/29‑1 (MQ=255)
                            tggtggGGGTTTTTGACCGGATTGAGGAAAAGCGt        <  1:13446065‑M2/29‑1 (MQ=255)
                            tggtggGGGTTTTTGACCGGATTGAGGAAAAGCGt        <  1:4614025‑M2/29‑1 (MQ=255)
                             ggtggGGGTTTTTGACCTGATTGAGGAAAAGCGTg       >  1:14868717‑M2/6‑35 (MQ=255)
                             ggtggGGGTTTTTGACCGGATTGAGGAAAAGCGTg       <  1:10863333‑M2/30‑1 (MQ=255)
                             ggtggGGGTTTTTGACCGGATTGAGGAAAAGCGTg       >  1:7484719‑M2/6‑35 (MQ=255)
                              gtggGGGTTTTTGACCGGATTGAGGAAAAGCGTGa      >  1:6527427‑M2/5‑35 (MQ=255)
                              gtggGGGTTTTTGACCGGATTGAGGAAAAGCGTGa      <  1:19851596‑M2/31‑1 (MQ=255)
                               tgtgggTTTTTGACCGGATTGAGGAAAAGCGTGAt     >  1:6945057/4‑35 (MQ=255)
                               tggGGGTTTTTGACCGGATTGAGGAAAAGCGTGAt     <  1:8460306‑M2/32‑1 (MQ=255)
                               tggGGGTTTTTGACCGGATTGAGGAAAAGCGTGAt     <  1:8403665‑M2/32‑1 (MQ=255)
                                ggGGGTTTTTGACCGGATTGAGGAAAAGCGTGATg    >  1:12141444‑M2/3‑35 (MQ=255)
                                ggGGGTTTTTGACCGGATTGAGGAAAAGCGTGATg    >  1:17116813‑M2/3‑35 (MQ=255)
                                ggGGGTTTTTGACCGGATTGAGGAAAAGCGTGATg    >  1:16758939‑M2/3‑35 (MQ=255)
                                ggGGGTTTTTGACCGGATTGAGGAAAAGCGTGATg    >  1:15796366‑M2/3‑35 (MQ=255)
                                ggGGGTTTTTGACCGGATTGAGGAAAAGCGTGATg    <  1:543694‑M2/33‑1 (MQ=255)
                                 gGGGTTTTTGACCGGATTGAGGAAAAGCGTGATGc   >  1:19519135‑M2/2‑35 (MQ=255)
                                 gGGGTTTTTGACCGGATTGAGGAAAAGCGTGATGc   >  1:9373336‑M2/2‑35 (MQ=255)
                                 gGGGTTTTTGACCGGATTGAGGAAAAGCGTGATGc   <  1:14413294‑M2/34‑1 (MQ=255)
                                 gGGGTTTTTGACCGGATTGAGGAAAACCGTGATGc   >  1:14910801‑M2/2‑35 (MQ=255)
                                  gggTTTTTGACCGGATTGAGGAAAAGCGTGATGcc  <  1:3240830/35‑1 (MQ=255)
                                  gggTTTTTGACCGGATTGAGGAAAAGCGTGATGcc  <  1:16346977/35‑1 (MQ=255)
                                  gggCTTTTGACCGGATTGAGGAAAAGCGTGATGcc  >  1:12386603/1‑35 (MQ=255)
                                  |                                  
GAGAAAGTTATTGAAGGGGCTTACGAGGTGGTGGGGGTTTTTGACCGGATTGAGGAAAAGCGTGATGCC  >  REL606/3006426‑3006494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.