New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 362546064 (0.620)22 (0.260) 7/40 NT 30.7% pseudogene (3/738 nt) yhjQ b3534; cell division protein (chromosome partitioning ATPase)
?REL606 = 3992020 46 (0.540)coding (141/510 nt) ECB_03720 conserved hypothetical protein

Only 100 of 138 total aligned reads displayed.

TAGGGAAGGCACTTGCACCGGGATCCGTTTCAATGGCAGTTGCTGGAAAATCAGCGGCATTAATCATCA  >  REL606/3991986‑3992054
                                  |                                  
tAGGGAAGGCACTTGCACCGGGATCCGTTTCAATg                                    <  1:4101307/35‑1 (MQ=255)
tAGGGAAGGCACTTGCACCGGGATCCGTTTCAATg                                    >  1:2197746/1‑35 (MQ=255)
tAGGGAAGGCACTTGCACCGGGATCCGTTTCAATg                                    >  1:1833019/1‑35 (MQ=255)
 aGGGAAGGCACTTGCACCGGGATCCGTTTCAATGg                                   <  1:15521541‑M2/35‑2 (MQ=255)
 aGGGAAGGCACTTGCACCGGGATCCGTTTCAATGg                                   >  1:13467677‑M2/1‑34 (MQ=255)
 aGGGAAGGCACTTGCACCGGGATCCGTTTCAATGg                                   <  1:2842419‑M2/35‑2 (MQ=255)
 aGGGAAGGCACTTGCACCGGGATCCGTTTCAATGg                                   >  1:11312685‑M2/1‑34 (MQ=255)
 aGGGAAGGCACTTGCACCGGGATCCGTTTCAATGg                                   >  1:19098239‑M2/1‑34 (MQ=255)
 aGGGAAGGCACTTGCACCGGGATCCGTTTCAATGg                                   <  1:18805687‑M2/35‑2 (MQ=255)
  gggAAGGCACTTGCACCGGGATCCGTTTCAATGgg                                  >  1:27020‑M2/1‑33 (MQ=255)
  gggAAGGCACTTGCACCGGGATCCGTTTCAATGgc                                  <  1:16314315‑M2/35‑3 (MQ=255)
  gggAAGGCACTTGCACCGGGATCCGTTTCAATGgc                                  >  1:5233909‑M2/1‑33 (MQ=255)
  gggAAGGCACTTGCACCGGGATCCGTTTCAATGgc                                  <  1:10293208‑M2/35‑3 (MQ=255)
  gggAAGGCACTTGCACCGGGATCCGTTTCAATGgc                                  <  1:8333603‑M2/35‑3 (MQ=255)
  gggAAGGCACTTGCACCGGGATCCGTTTCAATGgc                                  >  1:17648561‑M2/1‑33 (MQ=255)
   ggAAGGCACTTGCACCGGGATCCGTTTCAATGgca                                 >  1:951964‑M2/1‑32 (MQ=255)
   ggAAGGCACTTGCACCGGGATCCGTTTCAATGgca                                 >  1:13384080‑M2/1‑32 (MQ=255)
   ggAAGGCACTTGCACCGGGATCCGTTTCAATGgca                                 >  1:10116050‑M2/1‑32 (MQ=255)
    gAAGGCACTTGCACCGGGATCCGTTTCAATGgcag                                >  1:7237249‑M2/1‑31 (MQ=255)
    gAAGGCACTTGCACCGGGATCCGTTTCAATGgcag                                >  1:17163340‑M2/1‑31 (MQ=255)
    gAAGGCACTTGCACCGGGATCCGTTTCAATGgcag                                <  1:7052560‑M2/35‑5 (MQ=255)
    gAAGGCACTTGCACCGGGATCCGTTTCAATGgcag                                >  1:15374690‑M2/1‑31 (MQ=255)
     aaGGCACTTGCACCGGGATCCGTTTCAATGgcagg                               <  1:6349489‑M2/35‑6 (MQ=255)
     aaGGCACTTGCACCGGGATCCGTTTCAATGgcagg                               <  1:10238596‑M2/35‑6 (MQ=255)
     aaGGCACTTGCACCGGGATCCGTTTCAATGgcagg                               <  1:161849‑M2/35‑6 (MQ=255)
     aaGGCACTTGCACCGGGATCCGTTTCAATGGCAGt                               <  1:6782167/35‑1 (MQ=255)
     aaGGCACTTGCACCGGGATCCGTTTCAATGGCAGt                               <  1:4034035/35‑1 (MQ=255)
     aaGGCACTTGCACCGGGATCCGTTTCAATGGCAGt                               <  1:7389718/35‑1 (MQ=255)
      aGGCACTTGCACCGGGATCCGTTTCAATGgcaggg                              <  1:104660‑M2/35‑7 (MQ=255)
      aGGCACTTGCACCGGGATCCGTTTCAATGgcaggg                              <  1:13326347‑M2/35‑7 (MQ=255)
       ggCACTTGCACCGGGATCCGTTTCAATGgcagggg                             <  1:18666712‑M2/35‑8 (MQ=255)
       ggCACTTGCACCGGGATCCGTTTCAATGgcagggg                             <  1:17840025‑M2/35‑8 (MQ=255)
        gCACTTGCACCGGGATCCGTTTCAATGGCAGTTGc                            <  1:5680946/35‑1 (MQ=255)
        gCACTTGCACCGGGATCCGTTTCAATGGCAGTTGc                            <  1:11492200/35‑1 (MQ=255)
         cACTTGCACCGGGATCCGTTTCAATGgcagggggg                           <  1:10130357‑M2/35‑10 (MQ=255)
         cACTTGCACCGGGATCCGTTTCAATGgcagggggg                           <  1:376980‑M2/35‑10 (MQ=255)
         cACTTGCACCGGGATCCGTTTCAATGgcagggggg                           <  1:15353296‑M2/35‑10 (MQ=255)
         cACTTGCACCGGGATCCGTTTCAATGGCAGTTGCt                           <  1:8956040/35‑1 (MQ=255)
         cACTTGCACCGGGATCCGTTTCAATGGCAGTTGCt                           <  1:2835023/35‑1 (MQ=255)
         cACTTGCAACGGGATCCGTTTCAATGGCAGTTGCt                           <  1:13482273/35‑1 (MQ=255)
          aCTTGCACCGGGATCCGTTTCAATGgcaggggggg                          <  1:13869767‑M2/35‑11 (MQ=255)
          aCTTGCACCGGGATCCGTTTCAATGgcaggggggg                          <  1:19351283‑M2/35‑11 (MQ=255)
          aCTTGCACCGGGATCCGTTTCAATGGCAGTTGCTg                          <  1:17341556/35‑1 (MQ=255)
          aCTTGCACCGGGATCCGTTTCAATGGCAGTTGCTg                          <  1:9350709/35‑1 (MQ=255)
           cTTGCACCGGGATCCGTTTCAATGgcagggggggg                         <  1:7222412‑M2/35‑12 (MQ=255)
            ttGCACCGGGATCCGTTTCAATGgcaggggggggg                        <  1:5069608‑M2/35‑13 (MQ=255)
            ttGCACCGGGATCCGTTTCAATGgcaggggggggg                        <  1:17371525‑M2/35‑13 (MQ=255)
            ttGCACCGGGATCCGTTTCAATGGCAGTTGCTGGa                        <  1:8474150/35‑1 (MQ=255)
             tGCACCGGGATCCGTTTCAATGgcagggggggcgg                       <  1:13469155‑M2/35‑14 (MQ=255)
             tGCACCGGGATCCGTTTCAATGGCAGTTGCTGGaa                       <  1:19198817/35‑1 (MQ=255)
               cACCGGGATCCGTTTCAATGgcagggggggggggg                     <  1:9634289‑M2/35‑16 (MQ=255)
               cACCGGGATCCGTTTCAATGgcagggggggggggg                     <  1:7546485‑M2/35‑16 (MQ=255)
               cACCGGGATCCGTTTCAATGgcagggggggggggg                     <  1:10625689‑M2/35‑16 (MQ=255)
               cACCGGGATCCGTTTCAATGgcaggggggggggga                     <  1:11425242‑M2/35‑16 (MQ=255)
               cACCGGGATCCGTTTCAATGGCAGTTGCTGGaaaa                     <  1:15497190/35‑1 (MQ=255)
               cACCGGGATCCGTTTCAATGGCAGTTGCTGGaaaa                     <  1:17758106/35‑1 (MQ=255)
               cACCGGGATCCGTTTCAATGGCAGTTGCTGGaaaa                     <  1:16728951/35‑1 (MQ=255)
                aCCGGGATCCGTTTCAATGgcaggggggggggggt                    <  1:6293306‑M2/35‑17 (MQ=255)
                aCCGGGATCCGTTTCAATGgcaggggggggggggg                    <  1:1995988‑M2/35‑17 (MQ=255)
                aCCGGGATCCGTTTCAATGGCAGTTGCTGGAAAAt                    <  1:12588586/35‑1 (MQ=255)
                 ccGGGATCCGTTTCAATGgcaggggggggggggag                   <  1:1308403‑M2/35‑18 (MQ=255)
                  cGGGATCCGTTTCAATGgcaggggggggggggagg                  <  1:8674388‑M2/35‑19 (MQ=255)
                  cGGGATCCGTTTCAATGGCAGTTGCTGGAAAATCa                  <  1:17755449/35‑1 (MQ=255)
                  cGGGATCCGTTTCAATGGCAGTTGCTGGAAAATCa                  <  1:14422140/35‑1 (MQ=255)
                  cGGGATCCGTTTCAATGGCAGTTGCTGGAAAATCa                  <  1:938227/35‑1 (MQ=255)
                  cGGGATCCGTTTCAATGGCAGTTGCTGGAAAATCa                  <  1:12291116/35‑1 (MQ=255)
                   gggATCCGTTTCAATGgcaggggggggggggaggg                 <  1:16997067‑M2/35‑20 (MQ=255)
                    ggATCCGTTTCAATGGCAGTTGCTGGAAAATCAGc                <  1:4867813/35‑1 (MQ=255)
                    ggATCCGTTTCAATGGCAGTTGCTGGAAAATCAGc                <  1:5593516/35‑1 (MQ=255)
                     gATCCGTTTCAATGGCAGTTGCTGGAAAATCAGCg               <  1:6463799/35‑1 (MQ=255)
                     gATCCGTTTCAATGGCAGTTGCTGGAAAATCAGCg               <  1:1909655/35‑1 (MQ=255)
                      aTCCGTTTCAATGGCAGTTGCTGGAAAATCAGCgg              <  1:7450825/35‑1 (MQ=255)
                       tCCGTTTCAATGGCAGTTGCTGGAAAATCAGCGGc             <  1:5545258/35‑1 (MQ=255)
                        ccGTTTCAATGGCAGTTGCTGGAAAATCAGCGGCa            <  1:13878588/35‑1 (MQ=255)
                        ccGTTTCAATGGCAGTTGCTGGAAAATCAGCGGCa            <  1:20600067/35‑1 (MQ=255)
                         cGTTTCAATTGCAGTTGCTGGAAAATCAGCGGCAt           >  1:3028093/1‑35 (MQ=255)
                         cGTTTCAATGGCAGTTGCTGGAAAATCAGCGGCAt           <  1:17851315/35‑1 (MQ=255)
                         cGTTTCAATGGCAGTTGCTGGAAAATCAGCGGCAt           <  1:3459153/35‑1 (MQ=255)
                         cGTTTCAATGGCAGTTGCTGGAAAATCAGCGGCAt           <  1:661237/35‑1 (MQ=255)
                          gTTTCAATGGCAGTTGCTGGAAAATCAGCGGCAtt          <  1:9964089/35‑1 (MQ=255)
                          gTTTCAATGGCAGTTGCTGGAAAATCAGCGGCAtt          <  1:3697692/35‑1 (MQ=255)
                          gTTTAAATGGCAGTTGCTGGAAAATCAGCGGCAtt          <  1:153829/35‑1 (MQ=255)
                           tttCAATGGCAGTTGCTGGAAAATCAGCGGCATTa         <  1:198373/35‑1 (MQ=255)
                           tttCAATGGCAGTTGCTGGAAAATCAGCGGCATTa         <  1:14242259/35‑1 (MQ=255)
                           tttCAATGGCAGTTGCTGGAAAATCAGCGGCATTa         <  1:16036751/35‑1 (MQ=255)
                            ttCAATGGCAGTTGCTGGAAAATCAGCGGCATTaa        <  1:10255288/35‑1 (MQ=255)
                            ttCAATGGCAGTTGCTGGAAAATCAGCGGCATTaa        <  1:2492303/35‑1 (MQ=255)
                            ttCAATGGCAGTTGCTGGAAAATCAGCGGCATTaa        <  1:9052371/35‑1 (MQ=255)
                             tCAATGGCAGTTGCTGGAAAATCAGCGGCATTAat       <  1:9671700/35‑1 (MQ=255)
                              cAATGGCAGTTGCTGGAAAATCAGCGGCATTAatc      <  1:13457662/35‑1 (MQ=255)
                              cAATGGCAGTTGCTGGAAAATCAGCGGCATTAatc      <  1:19347996/35‑1 (MQ=255)
                              cAATGGCAGTTGCTGGAAAATCAGCGGCATTAatc      <  1:8969439/35‑1 (MQ=255)
                               aaTGGCAGTTGCTGGAAAATCAGCGGCATTAatca     <  1:6032171/35‑1 (MQ=255)
                                aTGGCAGTTGCTGGAAAATCAGCGGCATTAatcat    <  1:19643908/35‑1 (MQ=255)
                                aTGGCAGTTGCTGGAAAATCAGCGGCATTAatcat    <  1:9894879/35‑1 (MQ=255)
                                aTGGCAGTTGCTGGAAAATCAGCGGCATTAatcat    <  1:10133825/35‑1 (MQ=255)
                                 tGGCAGTTGCTGGAAAATCAGCGGCATTAatcatc   <  1:19516321/35‑1 (MQ=255)
                                  ggCAGTTGCTGGAAAATCAGCGGCATTAAtcatca  <  1:8858201/35‑1 (MQ=255)
                                  ggCAGTTGCTGGAAAATCAGCGGCATTAAtcatca  <  1:4521582/35‑1 (MQ=255)
                                  ggCAGTTGCTGGAAAATCAGCGGCATTAAtaatca  <  1:8383656/35‑1 (MQ=255)
                                  |                                  
TAGGGAAGGCACTTGCACCGGGATCCGTTTCAATGGCAGTTGCTGGAAAATCAGCGGCATTAATCATCA  >  REL606/3991986‑3992054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.