New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2064682 = | 77 (0.750) | 9 (0.110) | 3/38 | NT | 10.8% | coding (595/1218 nt) | wcaC | predicted glycosyl transferase |
? | REL606 | = 3433062 | 88 (1.080) | pseudogene (399/621 nt) | yhfS | putative enzyme; b3376_1 |
AGATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2064720‑2064682 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG < REL606/3433062‑3433029 AGATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCC < 1:10731576/35‑1 AGATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCC < 1:14944940/35‑1 GATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCA < 1:7573397/35‑1 GATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCA < 1:1245522/35‑1 GATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCA < 1:4371510/35‑1 GATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCA < 1:608716/35‑1 GATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCA < 1:14705217/35‑1 ATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCcg > 1:1461401/1‑33 ATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAG > 1:16035248/1‑35 ATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAG < 1:12136322/35‑1 ATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAG < 1:8686509/35‑1 ATGCTGGCGCTGGGCTGTCAGTTTATTCCCCCCAG < 1:9226326/35‑1 TGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCccc > 1:20376886/1‑32 GCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAGCC < 1:16356791/35‑1 GCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAGCC < 1:5266063/35‑1 cgATTTCCCCCAGCCGATTGCCGCCAGAGTGCTGG < 1:7681432/33‑1 cgATTTCCCCCAGCCGATTGCCGCCAGAGTGCTGG < 1:17351053/33‑1 gATTTTCCCCAGCCGATTGCCGCCAGAGTGCTGGA < 1:10470975/34‑1 TATTTCCCCCAGCCGATTGCCGCCAGAGTGCTGGA < 1:8336365/35‑1 tTTTCCCCCAGCCGATTGCCGCCAGAGTGCTGGAA < 1:17052878/34‑1 gTTTCCCCCAGCCGATTGCCGCCAGAGAGCTGGAA < 1:20059548/34‑1 ATTTCCCTCAGCCGATTGCCGCCAGAGTGCTGGAA < 1:4639022/35‑1 ATTTCCCCCAGCCGATTGCAGCCAGAGTGCTGGAA < 1:3248176/35‑1 TTCCCCCAGCCGATTGCCGCCAGAGTGCTGGAAGA < 1:15953539/35‑1 TCCACCAGCCGATTGCCGCCAGAGTGCTGGAAGAG < 1:4494686/35‑1 cctCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGG < 1:7290745/32‑1 caCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGGC < 1:13256304/33‑1 aaCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGGC < 1:7886900/33‑1 CCCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGGC < 1:20414309/35‑1 CCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGGCG < 1:9357627/35‑1 CCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGGCG < 1:14576504/35‑1 CCCAGCCGATTGCCGCCAGAGTGCTGGAAGAGGCG < 1:14221211/35‑1 CAGCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCA < 1:10925542/35‑1 CAGCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCA > 1:7506968/1‑35 AGCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAA > 1:20265990/1‑35 AGCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAA < 1:6316506/35‑1 AGCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAA > 1:19525889/1‑35 AGCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAA < 1:1716092/35‑1 GCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAA < 1:6281905/35‑1 GCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAA < 1:5561104/35‑1 GCCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAA > 1:19575113/1‑35 CCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAA > 1:6136413/1‑35 CCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAA > 1:8009132/1‑35 CCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAA < 1:4138472/35‑1 CCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAA > 1:13137954/1‑35 CCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAA > 1:3141308/1‑35 CCGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAA < 1:10215943/35‑1 CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG < 1:939283/35‑1 CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG > 1:5399197/1‑35 CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG > 1:3255900/1‑35 CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG > 1:19954320/1‑35 CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG > 1:15738189/1‑35 CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG > 1:15040921/1‑35 CGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG > 1:10053085/1‑35 AGATGCTGGCGCTGGGCTGTCAGTTTATTTCCCCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2064720‑2064682 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccGATTGCCGCCAGAGTGCTGGAAGAGGCGCAAAAG < REL606/3433062‑3433029 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |