New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2962019 =71 (0.690)12 (0.160) 4/34 NT 19.5% coding (1189/1278 nt) yggP predicted dehydrogenase
?REL606 3792210 = 49 (0.670)coding (316/414 nt) ECB_03532 hypothetical protein

Only 100 of 153 total aligned reads displayed.

GCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTT  >  REL606/2961985‑2962053
                                  |                                  
gCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAAc                                    >  1:896764/1‑35 (MQ=255)
gCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAAc                                    >  1:8321692/1‑35 (MQ=255)
gCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAAc                                    >  1:3617524/1‑35 (MQ=255)
gCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAAc                                    <  1:2584599/35‑1 (MQ=255)
gCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAAc                                    >  1:9410415/1‑35 (MQ=255)
gCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAAc                                    <  1:16596899/35‑1 (MQ=255)
ctgaaaaataaccatatggatcgatttcccccacc                                    >  1:7544366‑M1/35‑35 (MQ=255)
ctgaaaaataaccatatggatcgatttcccccacc                                    <  1:17461139‑M1/1‑1 (MQ=255)
ctaaaaaataaccatatggatcgatttcccccacc                                    >  1:11437667‑M1/35‑35 (MQ=255)
 tggaaaataaccatatggatcgatttcccccaccc                                   <  1:19263989‑M1/2‑1 (MQ=255)
 ccTGTTCATTCCAGATGCCGTGCGTTTCCTCAAcc                                   >  1:17403112/1‑35 (MQ=255)
 ccTGTTCATTCCAGATGCCGTGCGTTTCCTCAAcc                                   <  1:1970913/35‑1 (MQ=255)
 ccTGTTCATTCCAGATGCCGTGCGTTTCCTCAAcc                                   <  1:12042910/35‑1 (MQ=255)
 ccTGTTCATTCCAGATGCCGTGCGTTTCCTCAAcc                                   <  1:9518187/35‑1 (MQ=255)
  gaaaaataaccatatggatcgatttcccccaccca                                  >  1:13859242‑M1/33‑35 (MQ=255)
  gaaaaataaccatatggatagatttcccccaccca                                  >  1:16041226‑M1/33‑35 (MQ=255)
  cTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCa                                  >  1:20455646/1‑35 (MQ=255)
  cTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCa                                  <  1:12625865/35‑1 (MQ=255)
   tGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAg                                 >  1:9220575/1‑35 (MQ=255)
   tGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAg                                 >  1:18379558/1‑35 (MQ=255)
   tGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAg                                 >  1:3409069/1‑35 (MQ=255)
   tGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAg                                 >  1:6666017/1‑35 (MQ=255)
   tGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAg                                 >  1:12053536/1‑35 (MQ=255)
   tGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAg                                 <  1:7331470/35‑1 (MQ=255)
   tGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAg                                 <  1:14840626/35‑1 (MQ=255)
   tGTTCATTCCAGATGCCGTGCGTTTCCTAAACCAg                                 <  1:5145928/35‑1 (MQ=255)
   aaaaataaccatatggatcgatttcccccacCCAg                                 <  1:7692850‑M1/4‑1 (MQ=255)
    gTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGc                                <  1:15418838/35‑1 (MQ=255)
    aaaataaccatatggatcgatttcccccacCCAGc                                <  1:1984745‑M1/5‑1 (MQ=255)
    aaaataaccatatggatcgatttcccccacCCAGc                                >  1:1489464‑M1/31‑35 (MQ=255)
     ttCATTCCAGATGCCGTGCGTTTCCTCAACCAGcc                               <  1:7300787/35‑1 (MQ=255)
     ttCATTCCAGATGCCGTGCGTTTCCTCAACCAGcc                               <  1:3819319/35‑1 (MQ=255)
     aaataaccatatgtatcgatttcccccacCCAGcc                               <  1:20097486‑M1/6‑1 (MQ=255)
     aaataaccatatggatcgatttcccccacCCAgca                               <  1:15447231‑M1/6‑2 (MQ=255)
      tCATTCCAGATGCCGTGCGTTTCCTCAACCAGCcg                              >  1:19603332/1‑35 (MQ=255)
      aataaccatatggatcgatttcccacacCCAGCcg                              >  1:7924097‑M1/29‑35 (MQ=255)
       cATTCCAGATGCCGTGCGTTTCCTCAACCAGCcgc                             >  1:15680905/1‑35 (MQ=255)
       cATTCCAGATGCCGTGCGTTTCCTCAACCAGCcgc                             >  1:2049541/1‑35 (MQ=255)
       cATTCCAGATGCCGTGCGTTTCCTCAACCAGCcgc                             >  1:567683/1‑35 (MQ=255)
        aTTCCAGATGCCGTGCGTTTCCTCAACCAGCcgcg                            >  1:2767559/1‑35 (MQ=255)
         ttCCAGATGCCGTGCGTTTCCTCAACCAGCCgcgc                           >  1:12993592/1‑35 (MQ=255)
         ttCCAGATGCCGTGCGTTTCCTCAACCAGCCgcgc                           <  1:6317852/35‑1 (MQ=255)
         ttCCAGATGCCGTGCGTTTCCTCAACCAGCCgcgc                           >  1:5718376/1‑35 (MQ=255)
          tCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGcc                          >  1:19460118/1‑35 (MQ=255)
          tCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGcc                          >  1:18614793/1‑35 (MQ=255)
           ccAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCa                         >  1:4670544/1‑35 (MQ=255)
            cAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCaa                        >  1:17648839/1‑35 (MQ=255)
            cAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCaa                        >  1:15989174/1‑35 (MQ=255)
            cAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCaa                        >  1:17257832/1‑35 (MQ=255)
             aGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAAc                       >  1:16552645/1‑35 (MQ=255)
             aGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAAc                       >  1:6053263/1‑35 (MQ=255)
             aGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAAc                       >  1:6249999/1‑35 (MQ=255)
              gATGCCGTGCGTTTCCTCAACCAGCCGCGCCAAct                      >  1:2864221/1‑35 (MQ=255)
               aTGCCGTGCGTTTCCTCAACCAGCCGCGCCAActc                     >  1:13481827/1‑35 (MQ=255)
               aTGCCGTGCGTTTCCTCAACCAGCCGCGCCAActc                     >  1:183427/1‑35 (MQ=255)
               aTGCCGTGCGTTTCCTCAACCAGCCGCGCCAActc                     >  1:3768168/1‑35 (MQ=255)
               aTGCCGTGCGTTTCCTCAACCAGCCGCACAAActc                     >  1:3024219/1‑35 (MQ=37)
                tGCCGTGCTTTTCCCCACCCAGCCGCGCCAActct                    <  1:6039933/35‑1 (MQ=25)
                tGCCGTGCGTTTCCTCAACCAGCCGCGCCAActct                    >  1:4258434/1‑35 (MQ=255)
                tGCCGTGCGTTTCCTCAACCAGCCGCGCCAActct                    >  1:3980062/1‑35 (MQ=255)
                 gCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCtt                   >  1:16314449/1‑35 (MQ=255)
                  ccGTGCTTTCCCCCACCCAGCCGCGCCAACTCttt                  <  1:13493093/35‑1 (MQ=12)
                  ccGTGCGTTTCCTCAACCAGCCGCGCCAACTCttt                  >  1:14544598/1‑35 (MQ=255)
                  ccGTGCGTTTCCTCAACCAGCCGCGCCAACTCttt                  >  1:12485527/1‑35 (MQ=255)
                   cGTGCTTTCCCCCACCCAGCCGCGCCAACTCTTTa                 <  1:20584737/35‑1 (MQ=12)
                    gTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTaa                >  1:15582743/1‑35 (MQ=255)
                    gTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTaa                >  1:19292432/1‑35 (MQ=255)
                    gTGCGTTTCCCCACCCAGCCGCGCCAACTCTTTaa                <  1:12475516/35‑1 (MQ=37)
                     tGCTTTTCCCCACCCAGCCGCGCCAACTCTTTaaa               <  1:14489221/35‑1 (MQ=25)
                     tGCTTTTCCCCACCCAGCCGCGCCAACTCTTTaaa               <  1:13787472/35‑1 (MQ=25)
                     tGCGTTTCCTCAACCAGCCGCGCCAACTCTTTaaa               >  1:17668183/1‑35 (MQ=255)
                     tGCGTTTCCTCAACCAGCCGCGCCAACTCTTTaaa               >  1:14284516/1‑35 (MQ=255)
                     tGCGTTTCCTCAACCAGCCGCGCCAACTCTTTaaa               >  1:14440053/1‑35 (MQ=255)
                     tGCGTTTCCTCAACCAGCCGCGCCAACTCTTTaaa               >  1:19973192/1‑35 (MQ=255)
                     ngCGTTTCCTCAACCAGCCGCGCCAACTCTTTaaa               >  1:1758649/2‑35 (MQ=255)
                      gCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAAc              >  1:20311610/1‑35 (MQ=255)
                      gCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAAc              >  1:13642149/1‑35 (MQ=255)
                      gCGTTTCCCCACCCAGCCGCGCCAACTCTTTAAAc              <  1:7133535/35‑1 (MQ=37)
                       cttttccccacCCAGCCGCGCCAACTCTTTAAACa             >  1:1441835‑M1/12‑35 (MQ=255)
                       cttttCCTCCCCCAGCCGCGCCAACTCTTTAAACa             <  1:13097377/33‑1 (MQ=25)
                        tttcccccacCCAGCCGCGCCAACTCTTTAAACAg            >  1:1758478‑M1/11‑35 (MQ=255)
                        gTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAg            >  1:14309232/1‑35 (MQ=255)
                        gTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAg            >  1:1734813/1‑35 (MQ=255)
                         tttCCTTAACCAGCCGCGCCAACTCTTTAAACAGc           >  1:10970080/1‑35 (MQ=255)
                         tttCCTCAACCAGCCGCGCCAACTCTTTAAACAGc           >  1:18780732/1‑35 (MQ=255)
                         ttcccccccCCAGCCGCGCCAACTCTTTAAACAGc           >  1:10601733‑M1/10‑35 (MQ=255)
                         ttcccccacCCAGCCGCGCCAACTCTTTAAACAGc           >  1:5185258‑M1/10‑35 (MQ=255)
                          ttCCTCAACCAGCCGCGCCAACTCTTTAAACAGCg          >  1:10821294/1‑35 (MQ=255)
                          ttCCTCAACCAGCCGCGCCAACTCTTTAAACAGCg          >  1:7558232/1‑35 (MQ=255)
                          ttCCTCAACCAGCAGCGCCAACTCTTTAAACAGCg          <  1:20487726/35‑1 (MQ=255)
                           cccccacCCAGCCGCGCCAACTCTTTAAACAGCgg         >  1:3095025‑M1/8‑35 (MQ=255)
                             cTCAACCAGCCGCGCCAACTCTTTAAACAGCGGAt       >  1:6502932/1‑35 (MQ=255)
                              tCAACCAGCCGCGCCAACTCTTTAAACAGCGGATc      >  1:3825905/1‑35 (MQ=255)
                              ccccCCAGCCGCGCCAACTCTTTAAACAGCGGATc      >  1:12625255‑M1/5‑35 (MQ=255)
                               cccccAGCCGCGCCAACTCTTTAACCAGCGGATCg     <  1:865903/32‑1 (MQ=37)
                               cAACCAGCCGCGCCAACTCTTTAAACAGCGGATCg     >  1:9614115/1‑35 (MQ=255)
                               cAACCAGCCGCGCCAACTCTTTAAACAGCGGATCg     >  1:10414855/1‑35 (MQ=255)
                                aaCCAGCCGCGCCAACTCTTTAAACAGCGGATCgg    >  1:3890869/1‑35 (MQ=255)
                                 aCCAGCCGCGCCAACTCTTTAAACAGCGGATCgg  >  1:11249453/1‑34 (MQ=255)
                                  CCAGCCGCGCCAACTCTTTAAACAGCGGAtcgggg  <  1:2347085‑M1/35‑3 (MQ=255)
                                  |                                  
GCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTT  >  REL606/2961985‑2962053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.