New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 601491 =81 (0.790)7 (0.100) 3/34 NT 10.1% coding (530/1134 nt) fepE regulator of length of O‑antigen component of lipopolysaccharide chains
?REL606 2785963 = 67 (0.920)coding (408/1338 nt) ygcS predicted transporter

Only 100 of 185 total aligned reads displayed.

CCGTCACTGTATACCTCCTGGACGCTAAGTTTTACCGCGCCAACCAGTGAAGAGGCGCAGACCGTTTTG  >  REL606/601457‑601525
                                  |                                  
ttcagtaggtcacaccttgctggctgaattttccc                                    <  1:9329769‑M1/1‑1 (MQ=255)
ttcagtaggtcacaccttgctggctgaattttccc                                    <  1:12096673‑M1/1‑1 (MQ=255)
ccGTCACTGTATACCTCCTGGACGCTAAGTTTTAc                                    <  1:14167053/35‑1 (MQ=255)
ccGTCACTGTATACCTCCTGGACGCTAAGTTTTAc                                    >  1:940159/1‑35 (MQ=255)
ccGTCACTGTATACCTCCTGGACGCTAAGTTTTAc                                    <  1:15148468/35‑1 (MQ=255)
ccGTCACTGTATACCTCCTGGACGCTAAGTTTTAc                                    <  1:19975426/35‑1 (MQ=255)
 tcagtaggtcacaccttgctggctgaattttcccc                                   >  1:6408998‑M1/34‑35 (MQ=255)
 tcagtaggtcacaccttgctggctgaattttcccc                                   >  1:10501449‑M1/34‑35 (MQ=255)
 tcagtaggtcacaccttgctggctgaattttcccc                                   >  1:4864003‑M1/34‑35 (MQ=255)
 tcagtaggtcacaccttgctggctgaattttcccc                                   >  1:17637157‑M1/34‑35 (MQ=255)
 tcagtaggtcacaccttgctggctgaattttcccc                                   >  1:17005242‑M1/34‑35 (MQ=255)
 tcagtaggtcacaccttgctggctgaattttcccc                                   >  1:13222914‑M1/34‑35 (MQ=255)
 cGTCACTGTATACCTCCTGGACGCTAAGTTTTAcc                                   >  1:2988758/1‑35 (MQ=255)
 cGTCACTGTATACCTCCTGGACGCTAAGTTTTAcc                                   >  1:12445547/1‑35 (MQ=255)
 cGTCACTGTATACCTCCTGGACGCTAAGTTTTAcc                                   >  1:3744516/1‑35 (MQ=255)
 cGTCACTGTATACCTCCTGGACGCTAAGTTTTAcc                                   <  1:1535945/35‑1 (MQ=255)
  gTCACTGTATACCTCCTGGACGCTAAGTTTTACcg                                  >  1:8934189/1‑35 (MQ=255)
  gTCACTGTATACCTCCTGGACGCTAAGTTTTACcg                                  <  1:13931514/35‑1 (MQ=255)
  cagtaggtcacaccttgctggctgaattttcccag                                  <  1:7207375‑M1/3‑3 (MQ=255)
  cagtaggtcacaccttgctggctgaattttccCcg                                  >  1:20251436‑M1/33‑35 (MQ=255)
  cagtaggtcacaccttgctggctgaattttccCcg                                  >  1:1102675‑M1/33‑35 (MQ=255)
  cagtaggtcacaccttgctggctgaattttccCcg                                  >  1:2471594‑M1/33‑35 (MQ=255)
   tCACTGTATACCTCCTGGACGCTAAGTTTTACcgc                                 <  1:92025/35‑1 (MQ=255)
   agtaggtcacaccttgcttgctgaattttccCcgc                                 <  1:19238877‑M1/4‑1 (MQ=255)
   agtaggtcacaccttgctggctgaattttccCcgc                                 >  1:5058229‑M1/32‑35 (MQ=255)
   agtaggtcacaccttgctggctgaattttccCcgc                                 <  1:12483626‑M1/4‑1 (MQ=255)
   agtaggtcacaccttgctggctgaattttccCcgc                                 >  1:19578397‑M1/32‑35 (MQ=255)
   agtaggtcacaccttgctggctgaattttccCcgc                                 <  1:18821020‑M1/4‑1 (MQ=255)
   agtaggtcacaccttgctggctgaattntccCcgc                                 >  1:17347706‑M1/32‑35 (MQ=255)
    gtaggtcacaccttgctggctgaattttccCcgcg                                <  1:16313155‑M1/5‑1 (MQ=255)
    gtaggtcacaccttgctggctgaattttccCcgcg                                <  1:15001560‑M1/5‑1 (MQ=255)
    gtaggtcacaccttgctggctgaattttccCcgcg                                >  1:19686490‑M1/31‑35 (MQ=255)
    cACTGTATACCTCCTGGACGCTAAGTTTTACcgcg                                >  1:12694546/1‑35 (MQ=255)
     taggtcacaccttgctggctgaattttccCCgcgc                               <  1:17568662‑M1/6‑1 (MQ=255)
     taggtcacaccttgctggctgaattttccCCgcgc                               <  1:5526570‑M1/6‑1 (MQ=255)
     taggtcacaccttgctggctgaattttccCCgcgc                               >  1:10781198‑M1/30‑35 (MQ=255)
     aCTGTATACCTCCTGGACGCTAAGTTTTACCgcgc                               >  1:15540706/1‑35 (MQ=255)
      cTGTATACCTCCTGGACGCTAAGTTTTACCGCGcc                              >  1:16637203/1‑35 (MQ=255)
      cTGTATACCTCCTGGACGCTAAGTTTTACCGCGcc                              >  1:16102267/1‑35 (MQ=255)
      cTGTATACCTCCTGGACGCTAAGTTTTACCGCGcc                              >  1:13243482/1‑35 (MQ=255)
      aggtcacaccttgctggctgaattttccCCGCGcc                              <  1:2060017‑M1/7‑1 (MQ=255)
      aggtcacaccttgctggctgaattttccCCGCGcc                              >  1:1798062‑M1/29‑35 (MQ=255)
      aggtcacaccttgctggctgaattttccCCGCGcc                              >  1:11440918‑M1/29‑35 (MQ=255)
       tGTATACCTCCTGGACGCTAAGTTTTACCGCGCCa                             >  1:3318914/1‑35 (MQ=255)
        gTATACCTCCTGGACGCTAAGTTTTACCGCGCCaa                            >  1:10979052/1‑35 (MQ=255)
        gTATACCTCCTGGACGCTAAGTTTTACCGCGCCaa                            >  1:8272176/1‑35 (MQ=255)
         tataCCTCCTGGACGCTAAGTTTTACCGCGCCAAc                           >  1:6718410/1‑35 (MQ=255)
          ataCCTCCTGGACGCTAAGTTTTACCGCGCCAAcc                          >  1:16226106/1‑35 (MQ=255)
           taCCTCCTGGACGCTAAGTTTTACCGCGCCAACCa                         >  1:821484/1‑35 (MQ=255)
            aCCTCCTGGACGCTAAGTTTTACCGCGCCAACCAg                        >  1:14732960/1‑35 (MQ=255)
            aCCTCCTGGACGCTAAGTTTTACCGCGCCAACCAg                        >  1:20482027/1‑35 (MQ=255)
             cctcctGGACTCTAAGTTTTACCGCGCCAACCAGt                       >  1:400777/1‑35 (MQ=255)
             cctcctGGACGCTAAGTTTTCCCGAGCCAACAAGt                       <  1:17213246/35‑1 (MQ=25)
             cctcctGGACGCTAAGTTTTACCGCGCCAACCAGt                       >  1:7426101/1‑35 (MQ=255)
              ctcctGGACGCTAAGTTTTACCGCGCCAACCAGTg                      >  1:7828984/1‑35 (MQ=255)
                cctGGACGCTAAGTTTTACCGCGCCAACCAGTGaa                    >  1:6933032/1‑35 (MQ=255)
                cctGGACGCTAAGTTTTACCGCGCCAACCAGTGaa                    >  1:2762693/1‑35 (MQ=255)
                cctGAACGCTAATTTTTCCCGCGCCAACCAGTGaa                    <  1:6390795/35‑1 (MQ=25)
                 ctGGACGCTAAGTTTTACCGCGCCAACCAGTGAag                   >  1:13307948/1‑35 (MQ=255)
                 ctGGACACTAATTTTCCCCGCGCCAACCAGTGAag                   <  1:6520977/35‑1 (MQ=16)
                  tGGACGCTAAGTTTTACCTCGCCAACCAGTGAaga                  >  1:15696315/1‑35 (MQ=255)
                  tGGACGCTAAGTTTTACCGCGCCAACCAGTGAaga                  >  1:4520108/1‑35 (MQ=255)
                   ggACGCTAAGTTTTACCGCGCCAACCAGTGAagag                 >  1:10265151/1‑35 (MQ=255)
                   ggACGCTAAGTTTTACCGCGCCAACCAGTGAagag                 >  1:11206612/1‑35 (MQ=255)
                    gACGCTAAGTTTTACCGCGCCAACCAGTGAAGAgg                >  1:19680343/1‑35 (MQ=255)
                     ccGCAAAGTTTTCCCGCGCCAACCAGTGAAGAGgc               <  1:18576189/34‑1 (MQ=25)
                       gCTAAGTTTTACCGCGCCAACCAGTGAAGAGgcgc             >  1:2232886/1‑35 (MQ=255)
                       gCTAAGTTTTACCGCGCCAACCAGTGAAGAGgcgc             >  1:19394115/1‑35 (MQ=255)
                        cTAATTTTTCCCGCGCCAACCAGTGAAGAGGCGCa            <  1:5768394/35‑1 (MQ=37)
                        cTAAGTTTTACCGCGCCAACCAGTGAAGAGGCGCa            >  1:9876913/1‑35 (MQ=255)
                         taatttttcCCGCGCCAACCAGTGAAGAGGCGCAg           >  1:17296631‑M1/10‑35 (MQ=255)
                         tAAGTTTTACCGCGCCAACCAGTGAAGAGGCGCat           >  1:9645841/1‑34 (MQ=255)
                         tAAGTTTTACCGCGCCAACCAGTGAAGAGGCGCAg           >  1:3188725/1‑35 (MQ=255)
                           ttttttcCCGCGCCAACCAGTGAAGAGGCGCAGAc         >  1:2867617‑M1/8‑35 (MQ=255)
                           attttccCCGCGCCAACCAGTGAAGAGGCGCAGAc         >  1:5311233‑M1/8‑35 (MQ=255)
                           attttccCCGCGCCAACCAGTGAAGAGGCGCAGAc         >  1:7620071‑M1/8‑35 (MQ=255)
                           aGTTTTCCCGCGCCAACCAGTGAAGAGGCGCAGAc         <  1:17120385/35‑1 (MQ=255)
                           aGTTTTACCGCTCCAACCAGTGAAGAGGCGCAGAc         >  1:8603574/1‑35 (MQ=255)
                           aGTTTTACCGCGCCAACCAGTGAAGAGGCGCAGAc         >  1:10005179/1‑35 (MQ=255)
                            ttttccCCGCGCCAACCAGTGAAGAGGCGCAGAcc        >  1:11089695‑M1/7‑35 (MQ=255)
                            gtttccCCGCGCCAACCAGTGAAGAGGCGCAGAcc        >  1:6283868‑M1/7‑35 (MQ=255)
                             ttttACCGCGCCAACCAGTGAAGAGGCGCAGACCg       >  1:15170736/1‑35 (MQ=255)
                             ttttACCGCGCCAACCAGTGAAGAGGCGCAGACCg       >  1:15839083/1‑35 (MQ=255)
                             tttccCCGCGCCAACCAGTGAAGAGGCGCAGACCg       >  1:1372307‑M1/6‑35 (MQ=255)
                              tttACCGCGCCAACCAGTGAAGAGGCGCAGACCGt      >  1:17531295/1‑35 (MQ=255)
                              tttACCGCGCCAACCAGTGAAGAGGCGCAGACCGt      >  1:6149105/1‑35 (MQ=255)
                              tttACCGCGCCAACCAGTGAAGAGGCGCAGACCGt      >  1:1275717/1‑35 (MQ=255)
                               ttgCCGCGCCAACCAGTGAAGAGGCGCAGACCGtt     >  1:11484335‑M1/4‑35 (MQ=255)
                               ttcCCGCGCCAACCAGTGAAGAGGCGCAGACCGtt     >  1:18479572‑M1/4‑35 (MQ=255)
                               ttACCGCGCCAACCAGTGAAGAGGCGCAGACCGtt     >  1:13565970/1‑35 (MQ=255)
                               ttACCGCGCCAACCAGTGAAGAGGCGCAGACCGtt     >  1:10913762/1‑35 (MQ=255)
                               ttACCGCGCCAACCAGTGAAGAGGCGCAGACCGtt     >  1:5168553/1‑35 (MQ=255)
                                tACCGCGCCAACCAGTGAAGAGGCGCAGACCGttt    >  1:7453567/1‑35 (MQ=255)
                                tACCGCGCCAACCAGTGAAGAGGCGCAGACCGttt    >  1:18795419/1‑35 (MQ=255)
                                tACCGCGCCAACCAGTGAAGAGGCGCAGACCGttt    >  1:2286379/1‑35 (MQ=255)
                                ccCCGCGCCAACCAGTGAAGAGGCGCAGACCGttt    >  1:12210413‑M1/3‑35 (MQ=255)
                                 cCCGCGCCAACCAGTGAAGAGGCGCAGACCGtttt   >  1:3839043‑M1/2‑35 (MQ=255)
                                 cCCGCGCCAACCAGTGAAGAGGCGCAGACCGtttt   >  1:19300923‑M1/2‑35 (MQ=255)
                                 cCCGCGCCAACCAGTGAAGAGGCGCAGACCGtttt   >  1:8058793‑M1/2‑35 (MQ=255)
                                 cCCGCGCCAACCAGTGAAGAGGCGCAGACCGtttt   >  1:17256023‑M1/2‑35 (MQ=255)
                                  |                                  
CCGTCACTGTATACCTCCTGGACGCTAAGTTTTACCGCGCCAACCAGTGAAGAGGCGCAGACCGTTTTG  >  REL606/601457‑601525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.