New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 253054466 (0.640)11 (0.120) 5/42 NT 18.2% coding (1232/1668 nt) hyfG hydrogenase 4, subunit
?REL606 3367495 = 41 (0.460)intergenic (‑81/+26) yhdN/rplQ hypothetical protein/50S ribosomal protein L17

GCAATATTCCAAAAACACTGTTTACCTTTACCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2530508‑2530544
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGCGGGTTTTTTTA  >  REL606/3367495‑3367508
                                                   
GCAATATTCCAAAAACACTGTTTACCTTTACCTGC                  >  1:19189664/1‑35
GCAATATTCCAAAAACACTGTTTACCTTTACCGGC                  >  1:9632550/1‑35
GCAATATTCCAAAAACACTGTTTACCTTTACCGGC                  >  1:13132959/1‑35
GCAATATTCCAAAAACACTGTTTACCTTTACCGGC                  >  1:2478014/1‑35
GCAATATTCCAAAAACACTGTTTACCTTTACCGGC                  >  1:8607543/1‑35
GCAATATTCCAAAAACACTGTTTACCTTTACCGGC                  <  1:5359070/35‑1
GCAATATTCCAAAAACACTGTTTACCTTTACCGGC                  >  1:2800254/1‑35
GCAATATTCCAAAAACACTGTTTACCTTTACCGGC                  <  1:1940020/35‑1
GCAATATTCCAAAAACACTGTTTACCTTTACCGGC                  <  1:19349160/35‑1
GCAATATTCCAAAAACACTGTTTACCTTTACCAGC                  >  1:20233843/1‑35
 CAATATTCCAAAAACACTGTTTACCTTTACCGGCG                 <  1:11947253/35‑1
 CAATATTCCAAAAACACTGTTTACCTTTACCGGCG                 <  1:8700781/35‑1
 CAATATTCCAAAAACACTGTTTACCTTTACCGGCG                 >  1:15239864/1‑35
 CAATATTCCAAAAACACTGTTTACCTTTACCGGCG                 <  1:20253811/35‑1
 CAATATTCCAAAAACACTGTTTACCTTTACCGGCG                 <  1:15931880/35‑1
  AATATTCCAAAAACACTGTTTACCTTTACCGGCGG                >  1:2718530/1‑35
  AATATTCCAAAAACACTGTTTACCTTTACCGGCGG                >  1:5327479/1‑35
  AATATTCCAAAAACACTGTTTACCTTTACCGGCGG                >  1:16355210/1‑35
  AATATTCCAAAAACACTGTTTACCTTTACCGGCGG                <  1:13159698/35‑1
   ATATTCCAAAAACACTGTTTACCTTTACCGGCGGG               >  1:3097882/1‑35
   ATATTCCAAAAACACTGTTTACCTTTACCGGCGGG               >  1:18236943/1‑35
   ATATTCCAAAAACACTGTTTACCTTTACCGGCGGG               >  1:17161321/1‑35
   ATATTCCAAAAACACTGTTTACCTTTACCGGCGGG               >  1:7756812/1‑35
    TATTCCAAAAACACTGTTTACCTTTACCGGCGGGc              >  1:3303624/1‑34
    TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG              >  1:38785/1‑35
    TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG              >  1:4440412/1‑35
    TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG              >  1:9975651/1‑35
    TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG              >  1:13093636/1‑35
    TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG              >  1:2600791/1‑35
    TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG              >  1:19648369/1‑35
    TATTCCAAAAACACTGTTTACCTTTACCGGCGGGG              >  1:18970392/1‑35
     ATTCCAAAAACACTGTTTACCTTTACCGGCGGGGg             >  1:17670330/1‑34
      TTCCAAAAACACTGTTTACCTTTACCGGCGGGGgg            >  1:15732245/1‑33
       TCCAAAAACACTGTTTACCTTTACCGGCGGGGGGG           >  1:16011278/1‑35
       TCCAAAAACACTGTTTACCTTTACCGGCGGGGGGG           >  1:18331714/1‑35
         CAAAAACACTGTTTACCTTTACCGGCGGGGGGGGg         >  1:5486297/1‑34
         CAAAAACACTGTTTACCTTTACCGGCGGGGGGGGg         >  1:2637853/1‑34
          AAAAACACTGTTTACCTTTACCGGCGGGGGGGGTT        >  1:10296251/1‑35
           AAAACACTGTTTACCTTTACCGGCGGGGGGGGTTT       >  1:18643198/1‑35
           AAAACACTGTTTACCTTTACCGGCGGGGGGGGTTT       >  1:1231938/1‑35
            AAACACTGTTTACCTTTACCGGCGGGGGGGGTTTT      >  1:5469835/1‑35
              ACACTGTTTACCTTTACCGGCGGGGGGGGTTTTTT    >  1:9087393/1‑35
               CACTGTTTACCTTTACCGGCGGGGGGGGTTTTTTc   >  1:15435451/1‑34
               CACTGTTTACCTTTACCGGCGGGGGGGGTTTTTTT   >  1:7519609/1‑35
                ACTGTTTACCTTTACCGGCGGGGGGGGTTTTTTTc  >  1:4099871/1‑34
                ACTGTTTACCTTTACCGGCGGGGGGGGTTTTTTTc  >  1:18464954/1‑34
                                                   
GCAATATTCCAAAAACACTGTTTACCTTTACCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2530508‑2530544
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGCGGGTTTTTTTA  >  REL606/3367495‑3367508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.