New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 121335336 (0.350)4 (0.060) 3/30 NT 9.5% intergenic (‑85/+136) ycgX/ycgE hypothetical protein/predicted DNA‑binding transcriptional regulator
?REL606 = 4512602 54 (0.840)coding (720/747 nt) yjhP predicted methyltransferase

Only 100 of 164 total aligned reads displayed.

CCTGTTGTTACCGGGCGATGAGTGCGAACACGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCACGTAGC  >  REL606/4512568‑4512636
                                  |                                  
 cTGTTGTTACCGGGCGATGAGTGCGAACACGCCCc                                   >  1:17972211‑M2/1‑34 (MQ=255)
 cTGTTGTTACCGGGCGATGAGTGCGAACACGCCCc                                   >  1:15583823‑M2/1‑34 (MQ=255)
 cTGTTGTTACCGGGCGATGAGTGCGAACACGCCCc                                   >  1:7700004‑M2/1‑34 (MQ=255)
 cTGTTGTTACCGGGCGATGAGTGCGAACACGCCCc                                   <  1:11242715‑M2/35‑2 (MQ=255)
 cTGTTGTTACCGGGCGATGAGTGCGAACACGCCCc                                   <  1:3451034‑M2/35‑2 (MQ=255)
   gttgttACCGGGCGATGAGTGCGAACACGCCCcag                                 >  1:5714748‑M2/1‑32 (MQ=255)
   gttgttACCGGGCGATGAGTGCGAACACGCCCcag                                 >  1:959803‑M2/1‑32 (MQ=255)
    ttgttGCCGGGCGATGAGTGCGAACACGCCCcagc                                >  1:5145869‑M2/1‑31 (MQ=255)
    ttgttACCGGGCGATGAGTGCGAACACGCCCcagc                                <  1:8188745‑M2/35‑5 (MQ=255)
    ttgttACCGGGCGATGAGTGCGAACACGCCCcaag                                <  1:17569471‑M2/35‑5 (MQ=255)
     tgttACCGGGCGATGAGTGCGAACACGCCCcagcc                               <  1:5985667‑M2/35‑6 (MQ=255)
     tgttACCGGGCGATGAGTGCGAACACGCCCcagcc                               >  1:15340886‑M2/1‑30 (MQ=255)
      gttACCGGGCAATGAGTGCGAACACGCCCcagcca                              <  1:5099512‑M2/35‑7 (MQ=255)
      gtcACCGGGCGATGAGTGCGAACACGCCCcagcca                              <  1:11084962‑M2/35‑7 (MQ=255)
       ttACCGGGCGATGAGTGCGAACACGCCCcagccaa                             <  1:17492339‑M2/35‑8 (MQ=255)
       ttACCGGGCGATGAGTGCGAACACGCCCcagccaa                             <  1:17531671‑M2/35‑8 (MQ=255)
       ttACCGGGCGATGAGTGCGAACACGCCCcagccaa                             >  1:20471189‑M2/1‑28 (MQ=255)
       ttACCGGGCGATGAGTGCGAACACGCCCcagccaa                             <  1:7824901‑M2/35‑8 (MQ=255)
       ttACCGGGCGATGAGTGCGAACACGCCCcagccaa                             <  1:3146775‑M2/35‑8 (MQ=255)
       ttACCGGGCGATGAGTGCGAACACGCACcagccaa                             >  1:16783554‑M2/1‑28 (MQ=255)
        tACCGGGCGATGAGTGCGAACACGCCCcagccaaa                            >  1:13897757‑M2/1‑27 (MQ=255)
        tACCGGGCGATGAGTGCGAACACGCCCcagccaaa                            <  1:5199706‑M2/35‑9 (MQ=255)
        tACCGGGCGATGAGTGCGAACACGCCCcagccaaa                            <  1:3006353‑M2/35‑9 (MQ=255)
         aCCGGGCGATGAGTGCGAACACGCCCcagccaaag                           <  1:1856579‑M2/35‑10 (MQ=255)
          ccGGGCGATGAGTGCGAACACGCCCCAGCCAAAGc                          >  1:14266209/1‑35 (MQ=255)
          ccGGGCGATGAGTGCGAACACGCCCCAGCCAAAGc                          <  1:5410471/35‑1 (MQ=255)
          ccGGGCGATGAGTGCGAACACGCCCCAGCCAAAGc                          <  1:5894811/35‑1 (MQ=255)
           cGGGCGATTAGTGCGAACACGCCCCAGCAAAAGCa                         <  1:3239575/35‑1 (MQ=38)
           cGGGCGATGAGTGCGAACACGCCCCAGCCAAAGCa                         <  1:5573764/35‑1 (MQ=255)
           cGGGCGATGAGTGCGAACACGCCCCAGCCAAAGCa                         >  1:13055639/1‑35 (MQ=255)
            gggCGATTAGTGCGAACACGCCCCAGCCAAAGCAt                        >  1:7397588/1‑35 (MQ=255)
            gggCGATGAGTGCGAACACGCCCCAGCCAAAGCAt                        >  1:3405440/1‑35 (MQ=255)
            gggCGATGAGTGCGAACACGCCCCAGCCAAAGCAt                        >  1:16791235/1‑35 (MQ=255)
            gggCGATGAGTGCGAACACGCCCCAGCCAAAGCAt                        <  1:980238/35‑1 (MQ=255)
             ggCGATGAGTGCGAACACGCCCCAGCCAAAGCAtt                       >  1:7469458/1‑35 (MQ=255)
             ggCGATGAGTGCGAACACGCCCCAGCCAAAGCAtt                       <  1:11694284/35‑1 (MQ=255)
             ggCGATGAGTGCGAACACGCCCCAGCCAAAGCAtt                       <  1:16112084/35‑1 (MQ=255)
              gCGATGAGTGCGAACACGCCCCAGCCAAAGCATTc                      <  1:14824498/35‑1 (MQ=255)
              gCGATGAGTGCGAACACGCCCCAGCCAAAGCATTc                      <  1:15599044/35‑1 (MQ=255)
              gCGATGAGTGCGAACACGCCCCAGCCAAAGCATTc                      >  1:16025921/1‑35 (MQ=255)
              gCGATGAGTGCGAACACGCCCCAGCCAAAGCATTc                      <  1:18002006/35‑1 (MQ=255)
               cGATGAGTGCGAACACGCCCCAGCCAAAGCATTcc                     <  1:4946797/35‑1 (MQ=255)
                gATGAGTGCGAACACGCCCCAGCCAAAGCATTccc                    <  1:7952628/35‑1 (MQ=255)
                 aTGAGTGCGAACACGCCCCAGCCAAAGCATTCCcg                   >  1:17044029/1‑35 (MQ=255)
                  tGAGTGCGAACACGCCCCAGCCAAAGCATTCCcgc                  >  1:4677506/1‑35 (MQ=255)
                  tGAGTGCGAACACGCCCCAGCCAAAGCATTCCcgc                  >  1:15873183/1‑35 (MQ=255)
                  tGAGTGCGAACACGCCCCAGCCAAAGCATTCCcgc                  <  1:14403616/35‑1 (MQ=255)
                  tGAGTGCGAACACGCCCCAGCCAAAGCATTCCcgc                  >  1:20350456/1‑35 (MQ=255)
                     gTGCGAACACGCCCCAGCCAAAGCATTCCcgcgcg               >  1:10924414/1‑35 (MQ=255)
                     gTGCGAACACGCCCCAGCCAAAGCATTCCcgcgcg               >  1:12115124/1‑35 (MQ=255)
                     gTGCGAACACGCCCCAGCCAAAGCATTCCcgcgcg               <  1:3764052/35‑1 (MQ=255)
                     gTGCGAACACGCCCCAGCCAAAGCATTCCcgcgcg               <  1:17602920/35‑1 (MQ=255)
                      ggCGAACACCCCCCAGCCAAAGCATTCCCGCGCGt              <  1:9639846/34‑1 (MQ=255)
                       gCGAACACGCCCCAGCCAAAGCATTCCCGCGCGTa             <  1:15815827/35‑1 (MQ=255)
                       gCGAACACGCCCCAGCCAAAGCATTCCCGCGCGTa             <  1:13636455/35‑1 (MQ=255)
                       gCGAACACGCCCCAGCCAAAGCATTCCCGCGCGTa             <  1:18256014/35‑1 (MQ=255)
                       gCGAACACGCCCCAGCCAAAGCATTCCCGCGCGTa             <  1:1817775/35‑1 (MQ=255)
                        cGAACACGCCCCAGCCAAAGCATTCCCGCGCGTAg            <  1:5842350/35‑1 (MQ=255)
                        cGAACACGCCCCAGCCAAAGCATTCCCGCGCGTAg            >  1:2681550/1‑35 (MQ=255)
                        cGAACACGCCCCAGCCAAAGCATTCACGCGCGTAg            <  1:2166477/35‑1 (MQ=255)
                         gAACACGCCCCAGCCAAAGCATTCCCGCGCGTAgg           >  1:16158079/1‑35 (MQ=255)
                         gAACACGCCCCAGCCAAAGCATTCCCGCGCGTAgg           >  1:15270164/1‑35 (MQ=255)
                          aaCACGCCCCAGCCAAAGCATTCCCGCGCGTAGGt          <  1:17750990/35‑1 (MQ=255)
                           ccaccCCCcagccaaaggacagaccagattgaagt         >  1:10349426‑M2/2‑8 (MQ=255)
                           acacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTc         <  1:17838778/35‑1 (MQ=255)
                           acacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTc         <  1:7048804/35‑1 (MQ=255)
                           acacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTc         >  1:12785658/1‑35 (MQ=255)
                           acacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTc         >  1:7439167/1‑35 (MQ=255)
                            cacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCa        <  1:14245302/35‑1 (MQ=255)
                            cacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCa        >  1:19354864/1‑35 (MQ=255)
                            cacGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCa        <  1:20446136/35‑1 (MQ=255)
                            cacGCCCCAGCAAAAGCATTCCCGCGCGTAGGTCa        <  1:2361259/35‑1 (MQ=255)
                             cccccccagccaaaggacagaccagattgaagtgg       >  1:4211252‑M2/4‑6 (MQ=255)
                             cccccccAGCCAAAGCATTCCCGCGCGTAGGTCAc       <  1:5524631/32‑1 (MQ=255)
                             acGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCAc       <  1:1013692/35‑1 (MQ=255)
                             acGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCAc       >  1:9287330/1‑35 (MQ=255)
                             acGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCAc       >  1:19050648/1‑35 (MQ=255)
                             acGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCAc       >  1:2637649/1‑35 (MQ=255)
                              ccccccagccaaaggacagaccagattgaagtggt      >  1:10282912‑M2/3‑5 (MQ=255)
                              ccccccagccaaaggacagaccagattgaagtggt      >  1:13666154‑M2/3‑5 (MQ=255)
                               gCCCCAGCCAAAGCATTCCCGCGCGTAGGTCACGt     >  1:3397454/1‑35 (MQ=255)
                               gCCCCAGCCAAAGCATTCCCGCGCGTAGGTCACGt     >  1:8255596/1‑35 (MQ=255)
                               gCCCCAGCCAAAGCATTCCCGCGCGTAGGTCACGt     <  1:67215/35‑1 (MQ=255)
                               cccccagccaaaggacagaccagattgaagtggta     >  1:16285893‑M2/2‑4 (MQ=255)
                                ccccagccaaaggacagaccagattgaagtggtaa    >  1:12367271‑M2/1‑3 (MQ=255)
                                ccccAGCCAAAGCATTCCCGCGCGTAGGTCACGTa    <  1:101006/35‑1 (MQ=255)
                                ccccAGCCAAAGCATTCCCGCGCGTAGGTCACGTa    <  1:68873/35‑1 (MQ=255)
                                ccccAGCCAAAGCATTCCCGCGCGTAGGTCACGTa    <  1:10819630/35‑1 (MQ=255)
                                ccccAGCCAAAGCATTCCCGCGCGTAGGTCACGTa    <  1:17332040/35‑1 (MQ=255)
                                 cccagccaaaggacagaccagattgaagtggtaaa   >  1:8317961‑M2/1‑2 (MQ=255)
                                 cccagccaaaggacagaccagattgaagtggtaaa   >  1:2719290‑M2/1‑2 (MQ=255)
                                 cccagccaaaggacagaccagattgaagtggtaaa   >  1:18101977‑M2/1‑2 (MQ=255)
                                 cccAGCCAAAGCATTCCCGCGCGTAGGTCACGTAg   <  1:19503747/35‑1 (MQ=255)
                                 cccAGCCAAAGCATTCCCGCGCGTAGGTCACGTAg   <  1:2183171/35‑1 (MQ=255)
                                  ccagccaaaggacagaccagattgaagtggtaaaa  >  1:9040781‑M2/1‑1 (MQ=255)
                                  ccAGCCAAAGCATTCCCGCGCGTAGGTCNCGTANn  >  1:8538124/1‑35 (MQ=255)
                                  ccAGCCAAAGCATTCCCGCGCGTAGGTCACGTAGc  <  1:2318371/35‑1 (MQ=255)
                                  ccAGCCAAAGCATTCCCGCGCGTAGGTCACGTAGc  >  1:20581221/1‑35 (MQ=255)
                                  ccAGCCAAAGCATTCCCGCGCGTAGGTCACGTAGc  <  1:3658484/35‑1 (MQ=255)
                                  ccAGCCAAAGCATTCCCGCGCGTAGGTCACGTAGc  <  1:5644890/35‑1 (MQ=255)
                                  |                                  
CCTGTTGTTACCGGGCGATGAGTGCGAACACGCCCCAGCCAAAGCATTCCCGCGCGTAGGTCACGTAGC  >  REL606/4512568‑4512636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.