New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3302668 = | 53 (0.520) | 10 (0.120) | 6/38 | NT | 13.9% | intergenic (‑281/‑99) | nanR/dcuD | transcriptional regulator NanR/predicted transporter |
? | REL606 | 4085857 = | 82 (1.010) | intergenic (+55/‑94) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F |
ATGTTATATTTTTTGCAAGGCTATTTATGGTGCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3302706‑3302668 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG > REL606/4085857‑4085888 ATGTTATATTTTTTGCAAGGCTATTTATGGTGCGG > 1:7915999/1‑35 ATGTTATATTTTTTGCAAGGCTATTTATGGTGCGG > 1:4868104/1‑35 ATGTTATATTTTTTGCAAGGCTATTTATGGTGCGG < 1:15907676/35‑1 TGTTATATTTTTTGCAAGGCTATTTATGGTGCGGA > 1:7580532/1‑35 GTTATATTTTTTGCAAGGCTATTTATGGTGCGGAT < 1:9330286/35‑1 GTTATATTTTTTGCAAGGCTATTTATGGTGCGGAT > 1:9252159/1‑35 GTTATATTTTTTGCAAGGCTATTTATGGTGCGGAT < 1:16697814/35‑1 GTTATATTTTTTGCAAGGCTATTTATGGTGCGGAT < 1:10085303/35‑1 TTATATTTTTTGCAAGGCTATTTATGGTGCGGATG < 1:15120835/35‑1 TTATATTTTTTGCAAGGCTATTTATGGTGCGGATG < 1:11999873/35‑1 TTATATTTTTTGCAAGGCTATTTATGGTGCGGATG < 1:4196422/35‑1 TTATATTTTTTGCAAGGCTATTTATGGTGCGGATG > 1:17287733/1‑35 TATATTTTTTGCAAGGCTATTTATGGTGCGGATGT < 1:7115686/35‑1 TTTTTTGCAAGGCTATTTATGGTGCGGATGGGGGG > 1:13559921/1‑35 TTTTTGCAAGGCTATTTATGGTGCGGATGGGGGGG > 1:18528155/1‑35 TTTTTGCAAGGCTATTTATGGTGCGGATGGGGGGG > 1:2863045/1‑35 TTTTGCAAGGCTATTTATGGTGCGGATGGGGGGGT > 1:5708165/1‑35 TTTGCAAGGCTATTTATGGTGCGGATGGGGGGGTT > 1:2259307/1‑35 TTGCAAGGCTATTTATGGTGCGGATGGGGGGGTTT > 1:3771449/1‑35 GCAAGGCTATTTATGGTGCGGATGGGGGGGTTTTT > 1:16963552/1‑35 CAAGGCTATTTATGGTGCGGATGGGGGGGTTTTTT > 1:20613145/1‑35 CAAGGCTATTTATGGTGCGGATGGGGGGGTTTTTT > 1:5210829/1‑35 CAAGGCTATTTATGGTGCGGATGGGGGGGTTTTTT > 1:13132634/1‑35 AGGCTATTTATGGTGCGGATGGGGGGGTTTTTTTT > 1:11547924/1‑35 AGGCTATTTATGGTGCGGATGGGGGGGTTTTTTTT > 1:2737138/1‑35 GGCTATTTATGGTGCGGATGGGGGGGTTTTTTTTt > 1:5677434/1‑34 GATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGC < 1:6947271/35‑1 GATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGC < 1:5767242/35‑1 GATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGC < 1:3415638/35‑1 GATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGC < 1:19061586/35‑1 GATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGC < 1:16715921/35‑1 ATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCT > 1:16222793/1‑35 ATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCT > 1:17996687/1‑35 ATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCT < 1:1324511/35‑1 ATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCT > 1:16199613/1‑35 ATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCT < 1:12547096/35‑1 ATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCT > 1:17105610/1‑35 TGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG < 1:4533417/35‑1 TGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG < 1:3869425/35‑1 TGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG < 1:2950009/35‑1 TGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG < 1:13485924/35‑1 ATGTTATATTTTTTGCAAGGCTATTTATGGTGCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3302706‑3302668 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtGGGGGTTTTTTTTATCCTCAATTTGCCTGCTG > REL606/4085857‑4085888 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |