New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1199795 =69 (0.670)4 (0.060) 3/30 NT 7.4% coding (20/828 nt) potB spermidine/putrescine ABC transporter membrane protein
?REL606 = 3283512 57 (0.890)intergenic (+39/‑175) ptsO/yrbL phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr)/hypothetical protein

Only 100 of 164 total aligned reads displayed.

CATCACTTTGACATACAACTCCCTTCAAACTCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTC  >  REL606/3283478‑3283546
                                  |                                  
catcaCTTTGACATACAACTCCCTTCAAACTcccc                                    <  1:9111396/35‑1 (MQ=255)
catcaCTTTGACATACAACTCCCTTCAAACTcccc                                    <  1:1380966/35‑1 (MQ=255)
catcaCTTTGACATACAACTCCCTTCAAACTcccc                                    >  1:14576089/1‑35 (MQ=255)
catcaCTTTGACATACAACTCCCTTCAAACTcccc                                    >  1:20342971/1‑35 (MQ=255)
catcaCTTTGACATACAACTCCCTTCAAACTcccc                                    >  1:9631726/1‑35 (MQ=255)
 agcacTTTGACATACAACTCCCTTCAAACTCCCCc                                   >  1:11608897‑M2/3‑34 (MQ=255)
 aTCACTTTGACATACAACTCCCTTCAAACTCCCCc                                   >  1:10618766‑M2/1‑34 (MQ=255)
  tCACTTTGACATACAACTCCCTTCAAACTCCCCcc                                  <  1:3670582‑M2/35‑3 (MQ=255)
   cACTTTGACATACAACTCCCTTCAAACTCCCCccg                                 <  1:5457204‑M2/35‑4 (MQ=255)
   cACTTTGACATACAACTCCCTTCAAACTCCCCccg                                 <  1:13530109‑M2/35‑4 (MQ=255)
   cACTTTGAAATACAACTCCCTTCAAACTCCCCccg                                 >  1:10111896‑M2/1‑32 (MQ=255)
    aCTTTGACATACAACTCCCTTCAAACTCCCCccga                                <  1:18334360‑M2/35‑5 (MQ=255)
    aCTTTGACATACAACTCCCTTCAAACTCCCCccga                                <  1:20547763‑M2/35‑5 (MQ=255)
    aCTTTGACATACAACTCCCTTCAAACTCCCCccga                                >  1:17734722‑M2/1‑31 (MQ=255)
    aCTTTGACATACAACTCACTTCAAACTCCCCccga                                >  1:17901371‑M2/1‑31 (MQ=255)
     cTTTGACATACAACTCCCTTCAAACTCCTCccgac                               <  1:986674‑M2/35‑6 (MQ=255)
     cTTTGACATACAACTCCCTTCAAACTCCCCccgac                               <  1:2490102‑M2/35‑6 (MQ=255)
      tttGACATACAACTCCCTTCAAACTCCCCccgaca                              >  1:17103541‑M2/1‑29 (MQ=255)
      tttGACATACAACTCCCTTCAAACTCCCCccgaca                              <  1:9748028‑M2/35‑7 (MQ=255)
      tttGACATACAACTCCCTTCAAACTCCCCccgaca                              <  1:1532071‑M2/35‑7 (MQ=255)
      tttGACATACAACTCCCTTCAAACTCCCCccgaca                              >  1:16369798‑M2/1‑29 (MQ=255)
      tttGACATACAACTCCCTTCAAACTCCCCccgaca                              <  1:3305814‑M2/35‑7 (MQ=255)
       ttGACATACAACTCCCTTCAAACTCCCCccgacaa                             <  1:13099873‑M2/35‑8 (MQ=255)
       ttGACATACAACTCCCTTCAAACTCCCCccgacaa                             >  1:9072429‑M2/1‑28 (MQ=255)
       ttGACATACAACTCCCTTCAAACTCCCCccgacaa                             <  1:11825015‑M2/35‑8 (MQ=255)
       ttGACATACAACTCCCTTCAAACTCCCCccgacaa                             >  1:14140842‑M2/1‑28 (MQ=255)
       ttGACATACAACTCCCTTCAAACTCCCCccgacaa                             <  1:4016460‑M2/35‑8 (MQ=255)
       ttGACATACAACTCCCTTCAAACTCCCCccgacaa                             <  1:6827372‑M2/35‑8 (MQ=255)
       ttGACATACAACTCCCTTCAAACTCCCCccgacaa                             >  1:5887402‑M2/1‑28 (MQ=255)
        tGACATACAACTCCCTTCAAACTCCCCccgacaat                            <  1:4501734‑M2/35‑9 (MQ=255)
          aCATACAACTCCCTTCAAACTCCCCCCGACAATaa                          >  1:72105/1‑35 (MQ=255)
          aCATACAACTCCCTTCAAACTCCCCCCGACAATaa                          >  1:10778694/1‑35 (MQ=255)
          aCACACAACTCCCTTCAAACTCCCCCCGACAATaa                          >  1:18353690/1‑35 (MQ=255)
           cATACAACTCCCTTCAAACTCCCCCCGACAATAAg                         >  1:19782758/1‑35 (MQ=255)
           cATACAACCCCCTTCAAACCCCCCCCGACAATAAg                         <  1:18601850/35‑1 (MQ=255)
            aTACAACTCCCTTCAAACTCCCCCCGACAATAAGa                        >  1:3406399/1‑35 (MQ=255)
            aTACAACTCCCTTCAAACTCCCCCCGACAATAAGa                        >  1:4002507/1‑35 (MQ=255)
             tACAACTCCCTTCAAACTCCCCCCGACAATAAGaa                       >  1:8719140/1‑35 (MQ=255)
             tACAACTCCCTTCAAACTCCCCCCGACAATAAGaa                       >  1:15893413/1‑35 (MQ=255)
              aCAACTCCCTTCAACCCCCCCCCGACAATAAGaaa                      <  1:8693990/35‑1 (MQ=37)
              aCAACTCCCTTCAAACTCCCCCCGACAATAAGaaa                      >  1:11959291/1‑35 (MQ=255)
              aCAACTCCCTTCAAACTCCCCCCGACAATAAGaaa                      >  1:2528802/1‑35 (MQ=255)
                accTCCCTTCAAACTCCCCCCGACAATAAGAAAAt                    <  1:16732249/33‑1 (MQ=255)
                aaCTCCCTTCAAACTCCCCCCGACAATAAGAAAAt                    >  1:16625994/1‑35 (MQ=255)
                aaCTCCCTTCAAACTCCCCCCGACAATAAGAAAAt                    >  1:19511312/1‑35 (MQ=255)
                 aCTCCCTTCAAACTCCCCCCGACAATAAGAAAATc                   >  1:7595515/1‑35 (MQ=255)
                 aCTCCCTTCAAACTCCCCCCGACAATAAGAAAATc                   >  1:15247645/1‑35 (MQ=255)
                 aCTCCCTTCAAACTCCCCCCGACAATAAGAAAATc                   >  1:3375104/1‑35 (MQ=255)
                 aCTCCCTTCAAACTCCCCCCGACAATAAGAAAATc                   >  1:1155430/1‑35 (MQ=255)
                   tCCCTTCAAACTCCCCCCGACAATAAGAAAATCAc                 >  1:20590476/1‑35 (MQ=255)
                   tCCCTTCAAACTCCCCCCGACAATAAGAAAATCAc                 >  1:5718411/1‑35 (MQ=255)
                   tCCCTTCAAACCCCCCCCGACAATAAGAAAATAAc                 <  1:13290949/35‑1 (MQ=37)
                   ccccTTCAAACCCCCCCCGACAATAAGAAAATCAc                 <  1:11411302/34‑1 (MQ=255)
                    cccTTCAACCCCCCCCCGACAATAAGAAAATCACg                <  1:17964810/35‑1 (MQ=37)
                    cccTTCAAACCCCCCCCGACAATAAGAAAATCACg                <  1:19115363/35‑1 (MQ=255)
                    cccTCCAAACTCCCCCCGACAATAAGAAAATCACg                <  1:17142172/35‑1 (MQ=255)
                    cccTACAACCCCCCCCCGACAATAAGAAAATCACg                <  1:16161901/35‑1 (MQ=25)
                     ncTTCAAACTCCCCCCGACAATAAGAAAANCACGt               >  1:9947747/2‑35 (MQ=255)
                     ccTTCAAACTCCCCCCGACAATAAGAAAATCACGt               >  1:9382180/1‑35 (MQ=255)
                     ccTTCAAACTCCCCCCGACAATAAGAAAATCACGt               >  1:19478652/1‑35 (MQ=255)
                     ccTTCAAACTCCCCCCGACAATAAGAAAATCACGt               >  1:15149124/1‑35 (MQ=255)
                     ccTTCAAACTCCCCCCGACAATAAGAAAATCACGt               >  1:12771605/1‑35 (MQ=255)
                     ccTTCAAACTCCCCCCGACAATAAGAAAATCACGt               >  1:18599426/1‑35 (MQ=255)
                      cTTCAAACTCCCCCCGACAATAAGAAAATCACGTa              <  1:7000593/35‑1 (MQ=255)
                       ttCAACCCCCCCCCGACAATAAGAAAATCACGTAc             <  1:6199239/35‑1 (MQ=37)
                       ttCAAACTCCCCCCGACAATAAGAAAATCACGTAc             >  1:17363218/1‑35 (MQ=255)
                       ttCAAACTCCCCCCGACAATAAGAAAATCACGTAc             >  1:2288150/1‑35 (MQ=255)
                        tCAAACTCCCCCCGACAATAAGAAAATCACGTACt            >  1:11517326/1‑35 (MQ=255)
                        tCAAACTCCCCCCGACAATAAGAAAATCACGTACt            >  1:16960360/1‑35 (MQ=255)
                          caacCCCCCccgacaatagtgacaatcactacatt          >  1:7447060‑M2/2‑9 (MQ=255)
                          aaaCTCCCCCCGACAATAAGAAAATCACGTACTGa          >  1:18920958/1‑35 (MQ=255)
                          aaaCCCCCCCCGACAATAAGAAAATCACGTACTGa          <  1:2796074/35‑1 (MQ=255)
                          aaaCCCCCCCCGACAATAAGAAAATCACGTACTGa          <  1:16195537/35‑1 (MQ=255)
                           aaCTCCCCCCGACAATAAGAAAATCACGTACTGaa         >  1:12361860/1‑35 (MQ=255)
                           aaCCCCCCccgacaatagtgacaatcactacattc         >  1:786345‑M2/1‑8 (MQ=255)
                            cccccccccgacaatagtgacaatcactacattct        >  1:10082290‑M2/4‑7 (MQ=255)
                            cccccccccGACAATAAGAAAATCACGTACTGaaa        <  1:7794671/32‑1 (MQ=255)
                            accccccccGACAATAAGAAAATCACGTACTGaaa        <  1:15563862/32‑1 (MQ=255)
                            aCTCCCCCCGACAATAAGAAAATCACGTACTGaaa        >  1:19537785/1‑35 (MQ=255)
                            aCTCCCCCCGACAATAAGAAAATCACGTACTGaaa        >  1:6087757/1‑35 (MQ=255)
                            aCTCCCCCCGACAATAAGAAAATCACGTACTGaaa        >  1:13676101/1‑35 (MQ=255)
                             ccccccccGACAATAAGAAAATCACGTACTGAAAt       <  1:12179195/33‑1 (MQ=255)
                             cTCCCCCCGACAATAAGAAAATCACGTACTGAAAt       >  1:1526356/1‑35 (MQ=255)
                              tCCCCCCGACAATAAGAAAATCACGTACTGAAATc      >  1:11392897/1‑35 (MQ=255)
                              tCCCCCCGACAATAAGAAAATCACGTACTGAAATc      <  1:5358093/35‑1 (MQ=255)
                              tCCCCACGACAATAAGAAAATCACGTACTGAAATc      <  1:8888573/35‑1 (MQ=255)
                              cccccccgacaatagtgacaatcactacattctgg      >  1:9126804‑M2/2‑5 (MQ=255)
                              cccccccGACAATAAGAAAATCACGTACTGAAATc      <  1:6807006/34‑1 (MQ=255)
                               ccccccGACAATAAGAAAATCACGTACTGAAATCg     >  1:18234412/1‑35 (MQ=255)
                                cccccgacaatagtgacaatcactacattctggaa    >  1:11897271‑M2/1‑3 (MQ=255)
                                cccccGACAGTAAGAAAAGCACGTACTGAAATCGt    <  1:18849862/35‑1 (MQ=37)
                                cccccGACAATAAGAAAATCACGTACTGAAATCGt    <  1:13081877/35‑1 (MQ=255)
                                cccccGACAATAAGAAAATCACGTACTGAAATCGt    >  1:17243089/1‑35 (MQ=255)
                                cccccGACAATAAGAAAATCACGTACTGAAATCGt    <  1:16047965/35‑1 (MQ=255)
                                 ccccgacaatagtgacaatcactacattctggaac   >  1:9316594‑M2/1‑2 (MQ=255)
                                 ccccgacaatagggacaatcactacattctggaac   >  1:10951581‑M2/1‑2 (MQ=255)
                                 ccccGACAATAAGAAAATCACGTACTGAAATCGtt   <  1:18472026/35‑1 (MQ=255)
                                 ccccGACAATAAGAAAATCACGTACTGAAATCGtt   <  1:1581/35‑1 (MQ=255)
                                  cccGACAATAAGAAAATCACGTACTTAAATCGTtc  >  1:16520892/1‑35 (MQ=255)
                                  cccGACAATAAGAAAATCACGTACTGAAATCGTtc  <  1:4418844/35‑1 (MQ=255)
                                  |                                  
CATCACTTTGACATACAACTCCCTTCAAACTCCCCCCGACAATAAGAAAATCACGTACTGAAATCGTTC  >  REL606/3283478‑3283546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.