Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 4,613,019 | +TT :: IS150 (+) | 100% | intergenic (‑16/‑91) | smp ← / → serB | hypothetical protein/3‑phosphoserine phosphatase |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 664686 = | NA (NA) | 139 (1.350) | 45/48 | NT | 100% | intergenic (‑77/‑49) | gltL/insJ‑2 | ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein |
? | REL606 | = 4613019 | 0 (0.000) | intergenic (‑16/‑90) | smp/serB | hypothetical protein/3‑phosphoserine phosphatase | |||||
* | ? | REL606 | = 3894996 | NA (NA) | 114 (1.160) | 38/46 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 4613020 = | 0 (0.000) | intergenic (‑17/‑89) | smp/serB | hypothetical protein/3‑phosphoserine phosphatase |
Only 100 of 341 total aligned reads displayed.
GGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAT > REL606/664652‑664719 | cagttttgtgcgagccatcttccaccctttgaaat > 1:17530221‑M1/35‑35 (MQ=255) gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT < 1:9764151‑M1/35‑1 (MQ=255) gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT > 1:13208324‑M1/1‑35 (MQ=255) gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT > 1:6377989‑M1/1‑35 (MQ=255) agttttgtgcgagccatcttccaccctttgaaatt > 1:19283449‑M1/34‑35 (MQ=255) gttttgtgcgagccatcttccaccctttgaaattt < 1:8259346‑M1/3‑1 (MQ=255) gttttgtgcgagccatcttccaccctttgaaattt > 1:18050576‑M1/33‑35 (MQ=255) cGTGAGCAGAAAGCCCGACACGCTCCAGCAGtttt > 1:16534875/1‑35 (MQ=255) gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTg > 1:7068282/1‑35 (MQ=255) tGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcag < 1:14445182‑M1/35‑4 (MQ=255) gAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagg > 1:13700005‑M1/1‑31 (MQ=255) gAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagg > 1:7643158‑M1/1‑31 (MQ=255) gAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTa > 1:17817070/1‑35 (MQ=255) aGCAGAAAGCCCGACACGCTCCAGCAGTTTcaggg > 1:11672344‑M1/1‑30 (MQ=255) aGCAGAAAGCCCGACACGCTCCAGCAGTTTcaggg < 1:11056321‑M1/35‑6 (MQ=255) aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAc > 1:15282923/1‑35 (MQ=255) aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAc > 1:4372639/1‑35 (MQ=255) gtgcgagccatcttccaccctttgaaaTTTGTACt > 1:14962005‑M1/28‑35 (MQ=255) gtgcgagccatcttccaccctttgaaaTTTGTACt > 1:10892625‑M1/28‑35 (MQ=255) gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAca > 1:11409604/1‑34 (MQ=255) gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACt < 1:11155362/35‑1 (MQ=255) gCAGAAAGCCCGACACGCTCCAGCAG‑TTTGTACTg > 1:7706441/1‑35 (MQ=38) gCAGAAAGCCCGACACGCTCCAGCAG‑TTTGTACTg > 1:4331342/1‑35 (MQ=38) tgcgagccatcttccaccctttgaaaTTTGTACTg > 1:3780583‑M1/27‑35 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTcagggct > 1:2307506‑M1/1‑28 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg < 1:20293126/35‑1 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg < 1:18517248/35‑1 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg < 1:8718421/35‑1 (MQ=255) gcgagccatcttccaccctttgaaaTTTGTACTGc > 1:15954720‑M1/26‑35 (MQ=255) gcgagcaatcttccaccctttgaaaTTTGTACTGc > 1:2571125‑M1/26‑35 (MQ=255) gAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCa < 1:4186448/35‑1 (MQ=255) cgagccatcttccaccctttgaaaTTTGTACTGCa > 1:15672076‑M1/25‑35 (MQ=255) gagccatcttccaccctttgaaaTTTGTACTGCAc < 1:14605840‑M1/12‑1 (MQ=255) gagccatcttccaccctttgaaaTTTGTACTGCAc > 1:4773024‑M1/24‑35 (MQ=255) gagccatcttccaccctttgaaaTTTGTACTGCAc < 1:5767806‑M1/12‑1 (MQ=255) aaaGCCCGACACGCTCCAGCAGTTTcagggctttt > 1:3194309‑M1/1‑25 (MQ=255) aaaGCCCGACACGCTCCAGCAGTTTcagggctttt < 1:1033279‑M1/35‑11 (MQ=255) aaaGCCCGACACGCTCCAGCAGTTTTGTACTGCAc > 1:2712070/1‑35 (MQ=255) aaGCCCGACACGCTCCAGCAGTTTTGTACTGCAcc < 1:892413/35‑1 (MQ=255) aaGCCCGACACGCTCCAGCAGTTTTGTACTGCAcc > 1:4087517/1‑35 (MQ=255) gccatcttccaccctttgaaaTTTGTACTGCacca < 1:18693938‑M1/14‑2 (MQ=255) gccatcttccaccctttgaaaTTTGTACTGCAccc < 1:19157408‑M1/14‑1 (MQ=255) aGCCCGACACGCTCCAGCAGTTTcagggctttttc < 1:14146082‑M1/35‑13 (MQ=255) gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa < 1:19682940/35‑1 (MQ=255) ccatcttccaccctttgaagTTTGTACTGCACCCa > 1:12929704‑M1/21‑35 (MQ=255) ccatcttccaccctttgaaaTTTGTACTGCACCCa < 1:2962519‑M1/15‑1 (MQ=255) ccatcttccaccctttgaaaTTTGTACTGCACCCa > 1:14253009‑M1/21‑35 (MQ=255) ccatcttccaccctttgaaaTTTGTACTGCACCCa < 1:6591613‑M1/15‑1 (MQ=255) catcttccaccctttgaaaTTTGTACTGCACCCAt > 1:4054069‑M1/20‑35 (MQ=255) catcttccaccctttgaaaTTTGTACTGCACCCAt < 1:14653044‑M1/16‑1 (MQ=255) catcttccaccctttgaaaTTTGTACTGCACCCAt > 1:528645‑M1/20‑35 (MQ=255) ccGACACGCTCCAGAAGTTTcagggctttttcacg < 1:6107851‑M1/35‑16 (MQ=255) atcttccaccctttgaaaTTTGTACTGCACCCAtt < 1:10006959‑M1/17‑1 (MQ=255) atcttccaccctttgaaaTTTGTACTGCACCCAtt > 1:13060475‑M1/19‑35 (MQ=255) tcttccaccctttgaaaTTTGTACTGCACCTAttt < 1:5584802‑M1/18‑1 (MQ=255) tcttccaccctttgaaaTTTGTACTGCACCCAttt > 1:4971545‑M1/18‑35 (MQ=255) tcttccaccctttgaaaTTTGTACTGCACCCAttt < 1:18225289‑M1/18‑1 (MQ=255) cGACACGCTCCAGCAGTTTcagggctttttcacga > 1:10531586‑M1/1‑19 (MQ=255) gACACGCTCCAGCAGTTTcagggctttttcacgag < 1:6878917‑M1/35‑18 (MQ=255) ttccaccctttgaaaTTTGTACTGCACCCATTttg < 1:1547994‑M1/20‑1 (MQ=255) ttccaccctttgaaaTTTGTACTGCACCCATTttg < 1:1790061‑M1/20‑1 (MQ=255) ttccaccctttgaaaTTTGTACTGCACCCATTttg > 1:17684854‑M1/16‑35 (MQ=255) ttccaccctttgaaaTTTGTACTGCACCCATTttg > 1:6066973‑M1/16‑35 (MQ=255) ttccaccctttgaaaTTTGTACTGCACCCATTttg < 1:20095759‑M1/20‑1 (MQ=255) tccaccctttgaaaTTTGTACTGCACCCATTttgt > 1:3422454‑M1/15‑35 (MQ=255) cacGCTCCAGCAGTTTcagggctttttcacgagcc > 1:17114661‑M1/1‑16 (MQ=255) cacGCTCCAGCAGTTTTGTACTGCACCCATTttgt > 1:2153816/1‑35 (MQ=255) acGCTCCAGCAGTTTTGTACTGCACCCATTttgtt < 1:125209/35‑1 (MQ=255) caccctttgaaaTTTGTACTGCACCCATTttgttg < 1:7788120‑M1/23‑1 (MQ=255) caccctttgaaaTTTGTACTGCACCCATTttgttg > 1:16710471‑M1/13‑35 (MQ=255) caccctttgaaaTTTGTACTGCACCCATTttgttg > 1:18066957‑M1/13‑35 (MQ=255) caccctttgaaaTTTGTACTGCACCCATTttgttg < 1:15025159‑M1/23‑1 (MQ=255) accctttgaaaTTTGTACTGCACCCATTTTGTTgg > 1:7998966‑M1/12‑35 (MQ=255) accctttgaaaTTTGTACTGCACCCATTTTGTTgg > 1:19513930‑M1/12‑35 (MQ=255) ccctttgaaaTTTGTACTGCACCCATTTTGTTGGa > 1:14021984‑M1/11‑35 (MQ=255) ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg > 1:8536111‑M1/9‑35 (MQ=255) ctttgaaaTTTGTACTGCACCCATTTTGTTGGACg < 1:17383977‑M1/27‑1 (MQ=255) ctttgaaaTTTGTACTGAACCCATTTTGTTGGACg > 1:3527261‑M1/9‑35 (MQ=255) ccAGCAGTTTTGTACTGCACCCATTTTGTTGGatg > 1:3881426/1‑33 (MQ=255) tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa < 1:17954536‑M1/28‑1 (MQ=255) tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa < 1:7375556‑M1/28‑1 (MQ=255) tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa < 1:13444080‑M1/28‑1 (MQ=255) tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa < 1:4486104‑M1/28‑1 (MQ=255) tttgaaaTTTGTACTGCACCCATTTTGTTGGACGa < 1:14303696‑M1/28‑1 (MQ=255) cagcagTTTcagggctttttcacgagcccgcgctt > 1:16246715‑M1/1‑9 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt < 1:6694722‑M1/29‑1 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt > 1:10083207‑M1/7‑35 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt > 1:10786943‑M1/7‑35 (MQ=255) ttgaaaTTTGTACTGCACCCATTTTGTTGGACGAt > 1:3003347‑M1/7‑35 (MQ=255) tgaaaTTTGTACTGCACCCATTTTGTTGGACGATg < 1:9306884‑M1/30‑1 (MQ=255) tgaaaTTTGTACTGCACCCATTTTGTTGGACGATg < 1:12650597‑M1/30‑1 (MQ=255) gcagTTTTGTACTGCACCCATTTTGTTGGACGATg > 1:12415538/1‑35 (MQ=255) gtgTTGTGTACTGCACCCATTTTGTTGGACGATGa < 1:16766994/33‑1 (MQ=11) gaaaTTTGTACTGCACCCATTTTGTTGGACGATGa > 1:7244517‑M1/5‑35 (MQ=255) agTTTTGTACTGCACCCATTTTGTTGGACGATGaa < 1:19068789/35‑1 (MQ=40) aaaTTTGTACTGCACCCATTTTGTTGGACGATGaa > 1:6331747‑M1/4‑35 (MQ=255) aaaTTTGTACTGCACCCATTTTGTTGGACGATGaa > 1:9627609‑M1/4‑35 (MQ=255) caTGTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:12223212‑M1/33‑1 (MQ=255) aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:12305354‑M1/33‑1 (MQ=255) aaTTTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:18946184‑M1/33‑1 (MQ=255) | GGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAT > REL606/664652‑664719 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |