New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1462269 | 59 (0.570) | 9 (0.100) | 8/42 | NT | 14.8% | intergenic (‑31/‑310) | mokB/trg | regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
? | REL606 | = 3894996 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region |
Only 100 of 111 total aligned reads displayed.
TCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTG > REL606/1462235‑1462303 | tCATTCGTTGGCCTCGGTTGATAGAAATATCGGTC < 1:3162945‑M1/35‑1 (MQ=255) cATTCGTTGGCCTCGGTTGATAGAAATATCGGTCt < 1:20361136‑M1/35‑2 (MQ=255) aTTCGTTGGCCTCGGTTGATAGAAATAtcggtcgg < 1:2974292/35‑1 (MQ=255) aTTCGTTGGCCTCGGTTGATAGAAATAtcggtcgg < 1:19638769/35‑1 (MQ=255) aTTCGTTGGCCTCGGTTGATAGAAATAtcggtcgg < 1:10761147/35‑1 (MQ=255) aTTCGTTGGCCTCGGTTGATAGAAATAtcggtcgg < 1:14825949/35‑1 (MQ=255) aTTCGTTGGCCTCGGTTGATAGAAATAtcgggcgg > 1:5811033/1‑35 (MQ=255) aTTCGTTGGCCTCGGTTGATAGAAATAtcgggcgg > 1:18422908/1‑35 (MQ=255) aTTCGTTGGCCTCGGTTGATAGAAATAtcgggcgg > 1:17656431/1‑35 (MQ=255) aTTCGTTGGCCTCGGTTGATAGAAATATCGGTCtg > 1:10525253‑M1/1‑33 (MQ=255) ttCGTTGGCCTCGGTTGATAGAAATATCGGTCtgt > 1:18084192‑M1/1‑32 (MQ=255) ttCGTTGGCCTCGGTTGATAGAAATATCGGTCggg < 1:1601589/35‑1 (MQ=255) ttCGTTGGCCTCGGTTGATAGAAATATCGGTCggg < 1:15622383/35‑1 (MQ=255) ttCGTTGGCCTCGGTTGATAGAAATATCGGTCggg < 1:13064192/35‑1 (MQ=255) ttCGTTGGCCTCGGTTGATAGAAATATCGGTCggg < 1:13011927/35‑1 (MQ=255) ttCGTTGGCCTCGGTTGATAGAAATATCGGGCggg > 1:10164810/1‑35 (MQ=255) tCGTTGGCCTCGGTTGATAGAAATATCGGGCgggg > 1:12163334/1‑35 (MQ=255) cGTTGGCCTCGGTTGATAGAAATATCGGTCtgtac < 1:6579525‑M1/35‑6 (MQ=255) cGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGc < 1:4293419/35‑1 (MQ=255) ttGGCCTCGGTTGATAGAAATATCGGGCGGGGGCt > 1:10647853/1‑35 (MQ=25) tGGCCTCGGTTGATAGAAATATCGGTCGGGGCCtt < 1:15288603/35‑1 (MQ=255) ggCCTCGGTTGATAGAAATATCGGTCtgtactgac < 1:10982498‑M1/35‑10 (MQ=255) ggCCTCGGTTGATAGAAATATCGGTCGGGGCCTTc < 1:9209468/35‑1 (MQ=255) ggCCTCGGTTGATAGAAATATCGGGCGGGGCCTTc > 1:17368911/1‑35 (MQ=255) ggCCTAGGTTGATAGAAATATCGGTCGGGGCCTTc < 1:9794234/35‑1 (MQ=255) ggCATCGGTTGATAGAAATATCGGTCGGGGCCTTc < 1:5598814/35‑1 (MQ=255) gCCTCGGTTGATAGAAATATCGGTCtgtactgacc > 1:8002557‑M1/1‑25 (MQ=255) gCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCg < 1:8147371/35‑1 (MQ=255) gCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCg < 1:13574881/35‑1 (MQ=255) gCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCg < 1:9665061/35‑1 (MQ=255) gCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCg < 1:15636473/35‑1 (MQ=255) ccTCGGTTGATAGAAATATCGGTCtgtactgaccc > 1:996720‑M1/1‑24 (MQ=255) ccTCGGTTGATAGAAATATCGGTCtgtactgaccc > 1:336443‑M1/1‑24 (MQ=255) ccTCGGTTGATAGAAATATCGGTCGGGGCCTTCGt < 1:11760184/35‑1 (MQ=255) ccTCGGTTGATAGAAATATCGGTCGGGGCCTTCGt < 1:3343948/35‑1 (MQ=255) ccTCGGTTGATAGAAATATCGGGCGGGGGCTTCGt > 1:10786145/1‑35 (MQ=25) cTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTc > 1:3344038/1‑35 (MQ=255) cTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTc < 1:13367056/35‑1 (MQ=255) cTCGGTTGATAGAAATATCGGTCGGGGCCCTCGtt > 1:4712015/1‑34 (MQ=255) cTCGGTTGATAGAAATATCGGTAGGGGCCTTCGTc < 1:6774450/35‑1 (MQ=255) cagTTGATAGAAATATCGGTCGGGGCCTTCGTCtt > 1:6754251/3‑35 (MQ=255) cGGTTGATAGAAATATCGGTCtgtactgaccccaa > 1:19164457‑M1/1‑21 (MQ=255) cGGTTGATAGAAATATCGGTCGGGGCCTTCGTCtt < 1:1130382/35‑1 (MQ=255) cGGTTGATAGAAATATCGGGCGGGGCCTTCGTCtt > 1:16626831/1‑35 (MQ=255) cGGTTGATAGAAATATCGGGCGGGGCCTTCGTCtt > 1:3160057/1‑35 (MQ=255) gTTGATAGAAATATCGGGCGGGGCCTTCGTCTTTc > 1:16191751/1‑35 (MQ=255) ttGATAGAAATATCGGTCGGGGCCTTCGTCTTTCt > 1:1653396/1‑35 (MQ=255) ttGATAGAAATATCGGTCGGGGCCTTCGTCTTTCt < 1:5320594/35‑1 (MQ=255) tGATAGAAATATCGGTCtgtactgaccccaaaaag < 1:10601260‑M1/35‑19 (MQ=255) tGATAGAAATATCGGTCtgtactgaccccaaaaag > 1:10662110‑M1/1‑17 (MQ=255) tGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTg > 1:3626024/1‑35 (MQ=255) tGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTg < 1:11027152/35‑1 (MQ=255) gATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGa < 1:15067461/35‑1 (MQ=255) aTAGAAATATCGGTCGGGGCCTTCGTCTTTCTGAt < 1:20123245/35‑1 (MQ=255) aTAGAAATATCGGGCGGGGCCTTCGTCTTTTTGAt > 1:4919584/1‑35 (MQ=37) aGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTc < 1:17700677/35‑1 (MQ=255) gAAATATCGGTCGGGGCCTTCGTCTTTCTGATTcc < 1:5356238/35‑1 (MQ=255) gAAATATCGGTCGGGGCCTTCGTCTTTCTGATTcc < 1:3289458/35‑1 (MQ=255) aaaTATCGGTCtgtactgaccccaaaaagttggac > 1:1041574‑M1/1‑11 (MQ=255) aaaTATCGGTCTGGGCCTTCGTCTTTCTTATTccc > 1:3020554/1‑35 (MQ=37) aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTccc < 1:6715382/35‑1 (MQ=255) aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTccc < 1:9615666/35‑1 (MQ=255) aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTccc < 1:20387245/35‑1 (MQ=255) aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTccc > 1:2384131/1‑35 (MQ=255) aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTccc < 1:2630578/35‑1 (MQ=255) nntatCNGTCGGGGCCTTCGTCTTTCTGATTCCCn < 1:300461/33‑1 (MQ=255) aaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCg < 1:3240850/35‑1 (MQ=255) aaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCg < 1:20180822/35‑1 (MQ=255) aaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCg < 1:1581620/35‑1 (MQ=255) aaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCg < 1:4439475/35‑1 (MQ=255) atatCGGTCGGGGCCTTCGTCTTTCTGATTCCCgg > 1:8809359/1‑35 (MQ=255) atatCGGTCGGGGCCTTCGTCTTTCTGATTCCCgg < 1:7344426/35‑1 (MQ=255) tatCGGTCtgtactgaccccaaaaagttggacagt > 1:11353601‑M1/1‑8 (MQ=255) tatCGGTCtgtactgaccccaaaaagttggacagt > 1:3924763‑M1/1‑8 (MQ=255) tatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGt < 1:14909081/35‑1 (MQ=255) tatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGt < 1:9907961/35‑1 (MQ=255) tatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGt > 1:18402843/1‑35 (MQ=255) tatCGGTCGGGGCCCTCGTCTTTCTGATTCCCGGt > 1:10354169/1‑35 (MQ=255) ctcGGTTtgtactgaccccaaaaagttggacagtt < 1:8112808‑M1/34‑29 (MQ=255) atCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGtt > 1:9048951/1‑35 (MQ=255) atCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGtt < 1:1160391/35‑1 (MQ=255) tcggtcggGGCCTTCGTCTTTCTGATTCCCGGTTa < 1:18007534/35‑1 (MQ=255) tcggtcggGGCCTTCGTCTTTCTGATTCCCGGTTa < 1:1785221/35‑1 (MQ=255) cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAg < 1:5804227/35‑1 (MQ=255) cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAg < 1:11156552/35‑1 (MQ=255) cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAg < 1:14647556/35‑1 (MQ=255) cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAg > 1:16894224/1‑35 (MQ=255) cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAg > 1:16962870/1‑35 (MQ=255) cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAg < 1:8835795/35‑1 (MQ=255) cGGCCtgtactgaccccaaaaagttggacagttaa < 1:18484193‑M1/35‑31 (MQ=255) ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc < 1:12122514/35‑1 (MQ=255) ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc < 1:12979237/35‑1 (MQ=255) ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc < 1:17461387/35‑1 (MQ=255) ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc < 1:13297849/35‑1 (MQ=255) ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc < 1:723608/35‑1 (MQ=255) ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc < 1:11223714/35‑1 (MQ=255) ggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGc < 1:15413535/35‑1 (MQ=255) gtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGcc < 1:15117741/35‑1 (MQ=255) cggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTg < 1:15797388/35‑1 (MQ=255) cggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTg < 1:1934413/35‑1 (MQ=255) | TCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTG > REL606/1462235‑1462303 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |