New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 10868572 (0.700)24 (0.310) 8/36 NT 29.3% coding (577/1152 nt) ftsZ cell division protein FtsZ
?REL606 = 2243652 62 (0.800)coding (1242/1944 nt) ccmF heme lyase, CcmF subunit

Only 100 of 188 total aligned reads displayed.

ATAAATTGCGGATCTTACGCGGGCGATCCCGCCCCCAGCGCACCAGAGGACCGACACCAAGCAGTAGCG  >  REL606/2243618‑2243686
                                  |                                  
aTAAATTGCGGATCTTACGCGGGCGATCCCGcccc                                    <  1:19294025/35‑1 (MQ=255)
aTAAATTGCGGATCTTACGCGGGCGATCCCGcccc                                    <  1:16587140/35‑1 (MQ=255)
aTAAATTGCGGATCTTACGCGGGCGATCCCGcccc                                    <  1:8177404/35‑1 (MQ=255)
aTAAATTGCGGATCTTACGCGGGCGATCCCGcccc                                    <  1:8978592/35‑1 (MQ=255)
aTAAATTGCGGATCTTACGCGGGCGATCCCGcccc                                    >  1:12496060/1‑35 (MQ=255)
 tAAATTGCGGATCTTACGCGGGCGATCCCGCCCCc                                   >  1:3357108‑M2/1‑34 (MQ=255)
 tAAATTGCGGATCTTACGCGGGCGATCCCGCCCCc                                   >  1:17625957‑M2/1‑34 (MQ=255)
 tAAATTGCGGATCTTACGCGGGCGATCCCGCCCCc                                   >  1:9117598‑M2/1‑34 (MQ=255)
 tAAATTGCGGATCTTACGCGGGCGATCCCGCCCCc                                   <  1:10158816‑M2/35‑2 (MQ=255)
   aaTTGCGGATCTTACGCGTGCGATCCCGccccagg                                 >  1:19951781/1‑32 (MQ=37)
   aaTTGCGGATCTTACGCGGGCGATCCCGTCCCcag                                 <  1:1746077‑M2/35‑4 (MQ=255)
   aaTTGCGGATCTTACGCGGGCGATCCCGCCCCccg                                 <  1:15032295‑M2/35‑4 (MQ=255)
   aaTTGCGGATCTTACGCGGGCGATCCCGCCCCcag                                 <  1:5548666‑M2/35‑4 (MQ=255)
   aaTTGCGGATCTTACGCGGGCGATCCCGCCCCcag                                 <  1:13886847‑M2/35‑4 (MQ=255)
   aaTTGCGGATCTTACGCGGGCGATCCCGCCCCcag                                 >  1:11096548‑M2/1‑32 (MQ=255)
    aTTGCGGATCTTACGCGGGCGATCCCGCCCCcagc                                <  1:8001207‑M2/35‑5 (MQ=255)
     ttGCGGATCTTACGCGGGCGATCCCGCCCCcagcg                               >  1:7408259‑M2/1‑30 (MQ=255)
     ttGCGGATCTTACGCGGGCGATCCCGCCCCcagcg                               <  1:18173705‑M2/35‑6 (MQ=255)
     ttGCGGATCTTACGCGGGCGATCCCGCCCCcagcg                               <  1:10917702‑M2/35‑6 (MQ=255)
     ttGCGGATCTTACGCGGGCGATCCCGCCCCcagcg                               <  1:9603613‑M2/35‑6 (MQ=255)
      tGCGGATCTTACGCGGGCGATCCCGCCCCcagcgc                              <  1:10391372‑M2/35‑7 (MQ=255)
      tGCGGATCTTACGCGGGCGATCCCGCCCCcagagc                              >  1:18304925‑M2/1‑29 (MQ=255)
       gCGGATCTTACGCGGGCGATCCCGCCCCCAGCGCa                             >  1:12940614/1‑35 (MQ=255)
        cGGATCTTACGCGGGCGATCCCGCCCCCAGCGCAc                            >  1:924784/1‑35 (MQ=255)
        cGGATCTTACGCGGGCGATCCCGCCCCCAGCGCAc                            >  1:14820517/1‑35 (MQ=255)
        cGGATCTTACGCGGGCGATCCCGCCCCCAGCGCAc                            >  1:8535840/1‑35 (MQ=255)
        cGGATCTTACGCGGGCGATCCCGCCCCCAGCGCAc                            <  1:7768370/35‑1 (MQ=255)
        cGGATCTTACGCGGGCGATCCCGCCCCCAGCGCAc                            >  1:16145465/1‑35 (MQ=255)
         ggATCTTACGCGGGCGATCCCGCCCCCAGCGCAcc                           >  1:6554669/1‑35 (MQ=255)
         ggATCTTACGCGGGCGATCCCGCCCCCAGCGCAcc                           >  1:10251787/1‑35 (MQ=255)
         ggATCTTACGCGGGCGATCCCGCCCCCAGCGCAcc                           <  1:20405574/35‑1 (MQ=255)
         ggATCTTACGCGGGCGATCCCGCCCCCAGCGCAcc                           <  1:2766802/35‑1 (MQ=255)
         ggATCTTACGCGGGCGATCCCGCCCCCAGCGCAcc                           <  1:11127405/35‑1 (MQ=255)
          gATCTTACGCGGGCGATCCCGCCCCCAGCGCACCa                          >  1:9714816/1‑35 (MQ=255)
           aTCTTACGCGGGCGATCCCGCCCCCAGCGCACCag                         <  1:9654164/35‑1 (MQ=255)
           aTCTTACGCGGGCGATCCCGCCCCCAGCGCACCag                         <  1:1769414/35‑1 (MQ=255)
           aTCTTACGCGGGCGATCCCGCCCCCAGCGCACCag                         <  1:868539/35‑1 (MQ=255)
            tCTTACGCGGGCGATCCCGCCCCCAGCGCACCaga                        >  1:11591898/1‑35 (MQ=255)
            tCTTACGCGGGCGATCCCGCCCCCAGCGCACCaga                        >  1:5631196/1‑35 (MQ=255)
            tCTTACGCGGGCGATCCCGCCCCCAGCGCACCaga                        <  1:15854293/35‑1 (MQ=255)
             cTTACGCGGGCGATCCCGCCCCCAGCGCACCagag                       >  1:10797637/1‑35 (MQ=255)
             cTTACGCGGGCGATCCCGCCCCCAGCGCACCagag                       >  1:9390420/1‑35 (MQ=255)
              ttACGCGGGCGATCCCGCCCCCAGCGCACCAGAgg                      >  1:3466958/1‑35 (MQ=255)
               tACGCGGGCGATCCCGCCCCCAGCGCACCcgagcc                     >  1:2144616/1‑33 (MQ=38)
               tACGCGGGCGATCCCGCCCCCAGCGCACCAGAGGa                     >  1:2713920/1‑35 (MQ=255)
               tACGCGGGCGATCCCGCCCCCAGCGCACCAGAGGa                     >  1:11970790/1‑35 (MQ=255)
                aCGCGGGCGATCCCGCCCCCAGCGCACCAGAGGAc                    >  1:7440548/1‑35 (MQ=255)
                aCGCGGGCGATCCCGCCCCCAGCGCACCAGAGGAc                    <  1:19094350/35‑1 (MQ=255)
                aCGCGGGCGATCCCGCCCCCAGCGCACCAGAGGAc                    <  1:672159/35‑1 (MQ=255)
                aCGCGGGCGATCCCGCCCCCAGCGCACCAGAGGAc                    >  1:18114507/1‑35 (MQ=255)
                aCGCGGGCGATCCCGCCCCCAGCGCACCAGAGGAc                    <  1:14563576/35‑1 (MQ=255)
                 cgcgGGCGATCCCGCCCCCAGCGCACCAGAGGAcc                   <  1:15201945/35‑1 (MQ=255)
                 cgcgGGCGATCCCGCCCCCAGCGCACCAGAGGAcc                   <  1:15500867/35‑1 (MQ=255)
                   cgGGCGATCCCGCCCCCAGCGCACCAGAGGACCGa                 >  1:20255342/1‑35 (MQ=255)
                   cgGGCGATCCCGCCCCCAGCGCACCAGAGGACCGa                 >  1:16940167/1‑35 (MQ=255)
                    gggCGATCCCGCCCCCAGCGCACCAGAGGACCGac                >  1:12323367/1‑35 (MQ=255)
                    gggCGATCCCGCCCCCAGCGCACCAGAGGACCGac                >  1:9046865/1‑35 (MQ=255)
                     ggCGATCCCTCCCCcagcgcctttcagtacatcgt               >  1:20104923‑M2/1‑14 (MQ=255)
                     agcGATCCCTCCCCcagcgcctttcagtacatcgt               >  1:11808550‑M2/2‑14 (MQ=255)
                      gCGATCCCTCCCCcagcgcctttcagtacatcgtt              >  1:17420108‑M2/1‑13 (MQ=255)
                      gCGATCCCGCCCCCAGCGCACCAGAGGACCGacac              >  1:11879379/1‑35 (MQ=255)
                       cGATCCCTCCCCcagcgcctttcagtacatcgttc             >  1:10010171‑M2/1‑12 (MQ=255)
                        gATCCCTCCCCcagcgcctttcagtacatcgttcg            >  1:3287380‑M2/1‑11 (MQ=255)
                        gATCCCGCCCCCAGCGCACCAGAGGACCGACACCa            >  1:7121096/1‑35 (MQ=255)
                         aTCCCTCCCCcagcgcctttcagtacatcgttcgc           >  1:16215945‑M2/1‑10 (MQ=255)
                         aTCCCTCCCCcagcgcctttcagtacatcgttcgc           >  1:6105602‑M2/1‑10 (MQ=255)
                         aTCCCGCCCCCAGCGCACCAGAGGACCGACACCaa           >  1:15986994/1‑35 (MQ=255)
                         aTCCCGCCCCCAGCGCACCAGAGGACCGACACCaa           >  1:4619533/1‑35 (MQ=255)
                          tCCCCCCCCcagcgcctttcagtacatcgttcgct          >  1:12147995‑M2/1‑9 (MQ=255)
                          cccctCCCCcagcgcctttcagtacatcgttcgct          >  1:4635031‑M2/2‑9 (MQ=255)
                          cccctCCCCcagcgcctttcagtacatcgttcgct          >  1:236580‑M2/2‑9 (MQ=255)
                           cccTCCCCcagcgcctttcagtacatcgttcgctg         >  1:14355719‑M2/1‑8 (MQ=255)
                           cccTCCCCcagcgcctttcagtacatcgttcgctg         >  1:3994694‑M2/1‑8 (MQ=255)
                           cccGCCCCCAGCGCACCAGAGGACCGACACCAAGc         <  1:13177293/35‑1 (MQ=255)
                           cccGCCCCCAGCGCACCAGAGGACCGACACCAAGc         >  1:10629587/1‑35 (MQ=255)
                           cccGCCCCCAGCGCACCAGAGGACCGACACCAAGc         >  1:11336601/1‑35 (MQ=255)
                           cccCCCCCcagcgcctttcagtacatcgttcgctg         >  1:14842749‑M2/1‑8 (MQ=255)
                           cccCCCCCcagcgcctttcagtacatcgttcgctg         >  1:12008510‑M2/1‑8 (MQ=255)
                            ccTCCCCcagcgcctttcagtacatcgttcgctgc        >  1:8357909‑M2/1‑7 (MQ=255)
                            ccTCCCCcagcgcctttcagtacatcgttcgctgc        >  1:5306946‑M2/1‑7 (MQ=255)
                            ccGCCCCCAGCGCACCAGAGGACCGACACAAAGCa        >  1:4560102/1‑35 (MQ=255)
                            ccCCCCCcagcgcctttcagtacatcgttcgctgc        >  1:15605818‑M2/1‑7 (MQ=255)
                             cccccccagcgcctttcagtacatcgttcgctgcg       >  1:9279756‑M2/3‑6 (MQ=255)
                             cGCCCCCAGCGCACCAGAGGACCGACACCAAGCAg       >  1:12863593/1‑35 (MQ=255)
                              tcccccagcgcctttcagtacatcgttcgctgcgc      >  1:4269310‑M2/2‑5 (MQ=255)
                              gCCCCCAGCGCACCAGAGGACCGACACCAAGCAGt      >  1:19484736/1‑35 (MQ=255)
                              gCCCCCAGCGCACCAGAGGACCGACACCAAGCAGt      >  1:1370049/1‑35 (MQ=255)
                               cccccAGCGCACCAGAGGACCGACACCAAGCAGTa     >  1:7157255/1‑35 (MQ=255)
                               cccccAGCGCACCAGAGGACCGACACCAAGCAGTa     >  1:6246231/1‑35 (MQ=255)
                                ccccagcgcctttcagtacatcgttcgctgcgcca    >  1:1877703‑M2/1‑3 (MQ=255)
                                ccccagcgcctttcagtacatcgttcgctgagcca    >  1:3187120‑M2/1‑3 (MQ=255)
                                ccccAGCGCACCAGAGGCCCGACACCAAGCAGTAg    <  1:8708003/35‑1 (MQ=255)
                                ccccAGCGCACCAGAGGACCGACACCAAGCAGTAg    >  1:992125/1‑35 (MQ=255)
                                ccccAGCGCACCAGAGGACCGACACCAAGCAGTAg    >  1:8365655/1‑35 (MQ=255)
                                ccccAGCGCACCAGAGGACCGACACCAAGCAGTAg    >  1:17753078/1‑35 (MQ=255)
                                 cccagcgcctttcagtacatcgttcgctgcgccaa   >  1:16773438‑M2/1‑2 (MQ=255)
                                 cccagcgcctttcagtacatcgttcgctgcgccaa   >  1:6464542‑M2/1‑2 (MQ=255)
                                  ccagcgcctttcagtacatcgttcgctgcgccaaa  >  1:19954661‑M2/1‑1 (MQ=255)
                                  ccagcgcctttcagtacatcgttcgctgcgccaaa  >  1:9775802‑M2/1‑1 (MQ=255)
                                  ccagcgcctttcagtacatcgttcgctgcgccaaa  >  1:20211744‑M2/1‑1 (MQ=255)
                                  |                                  
ATAAATTGCGGATCTTACGCGGGCGATCCCGCCCCCAGCGCACCAGAGGACCGACACCAAGCAGTAGCG  >  REL606/2243618‑2243686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.