New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 580468 =60 (0.580)16 (0.200) 4/38 NT 16.7% coding (852/3144 nt) cusA copper/silver efflux system, membrane component
?REL606 2715365 = 112 (1.380)coding (1506/2631 nt) alaS alanyl‑tRNA synthetase

Only 100 of 221 total aligned reads displayed.

GGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCAAAA  >  REL606/580434‑580502
                                  |                                  
ggggCATTGCCGAACTAAACGGCGAAGGGGACGTg                                    >  1:6278624/1‑35 (MQ=37)
ggggCATTGCCGAACTAAACGGCGAAGGCGAAGTg                                    <  1:14873063/35‑1 (MQ=255)
cgtgctggatcaaacgccattctatgcggcatccg                                    <  1:8166824‑M1/1‑1 (MQ=255)
cgtgctggatcaaacgccattctatgcggaatccg                                    >  1:12526283‑M1/35‑35 (MQ=255)
cgtgctggatcaaacgccattctatgcggaatccg                                    <  1:15108453‑M1/1‑1 (MQ=255)
cgtgctggatcaaacgccattctatgcggaatccg                                    >  1:19030484‑M1/35‑35 (MQ=255)
caattccgatattttcgacggttttaactatgtTg                                    <  1:10952186‑M1/2‑1 (MQ=255)
 ntgctggatcaaacgccattctatgcggaatccgg                                   <  1:2180776‑M1/2‑1 (MQ=255)
 gtgctggatcaaacgccattctatgcggaatccgg                                   >  1:13181253‑M1/34‑35 (MQ=255)
 gtgctggatcaaacgccattctatgcggaatccgg                                   >  1:13980772‑M1/34‑35 (MQ=255)
 gtgctggatcaaacgccattctatgcggaatccgg                                   <  1:19316077‑M1/2‑1 (MQ=255)
 gtgctggatcaaacgccattctatgcggaatccgg                                   >  1:3568754‑M1/34‑35 (MQ=255)
 gggCATTGCCGAACTAAACGGCGAAGGCGAAGTgg                                   >  1:4700307/1‑35 (MQ=255)
 gggCATTGCCGAACTAAACGGCGAAGGCGAAGTgg                                   <  1:5648314/35‑1 (MQ=255)
 gggCATTGCCGAACTAAACGGCGAAGGCGAAGCgg                                   >  1:12212553/1‑35 (MQ=255)
 aattcctatattttcgacggttttaactatgtTgg                                   <  1:19949128‑M1/3‑1 (MQ=255)
 aattccgatattttcgacggttttaactatgtTgg                                   <  1:13104962‑M1/3‑1 (MQ=255)
 aattccgatattttcgacggttttaactatgtTgg                                   >  1:10044970‑M1/33‑35 (MQ=255)
  tgctggatcaaacgccattctatgcggaatccggc                                  <  1:11887410‑M1/3‑1 (MQ=255)
  tgctggatcaaacgccattctatgcggaatccggc                                  >  1:18736123‑M1/33‑35 (MQ=255)
  tgctggatcaaacgccattctatgcggaatccggc                                  <  1:16651637‑M1/3‑1 (MQ=255)
  tgctggatcaaacgccattctatgcggaatccggc                                  >  1:4879748‑M1/33‑35 (MQ=255)
  tgctggatcaaacgccattctatgcggaatccggc                                  <  1:978399‑M1/3‑1 (MQ=255)
  tgctggatcaaacgccattctatgcggaatccggc                                  >  1:8455224‑M1/33‑35 (MQ=255)
  attccgatattttcgacggttttaactatgtTggc                                  <  1:2083010‑M1/4‑1 (MQ=255)
  attccgatattttcgacggttttaactatgtTggc                                  <  1:11588542‑M1/4‑1 (MQ=255)
   ttccgatattttcgacggttttaactatgttgggg                                 <  1:1763156‑M1/5‑3 (MQ=255)
   ttccgatattttcgacggttttaactatgttgggg                                 <  1:16420977‑M1/5‑3 (MQ=255)
   ttccgatattttcgacggttttaactatgtTggcg                                 >  1:1807149‑M1/31‑35 (MQ=255)
   ttccgatattttcgacggttttaactatgtTggcg                                 <  1:19232256‑M1/5‑1 (MQ=255)
   ttccgatattttcgacgggtttaactatgtTggcg                                 <  1:7302064‑M1/5‑1 (MQ=255)
   gctggatcaaacgccattctatgcggaatccggcg                                 >  1:15984446‑M1/32‑35 (MQ=255)
   gctggatcaaacgccattctatgcggaatccggcg                                 <  1:4587456‑M1/4‑1 (MQ=255)
   gctggatcaaacgccattctatgcggaatccggcg                                 <  1:17020305‑M1/4‑1 (MQ=255)
   gctggatcaaacgccattctatgcggaatccggcg                                 >  1:19577620‑M1/32‑35 (MQ=255)
   gctggatcaaacgccattctatgcggaatccggcg                                 <  1:384322‑M1/4‑1 (MQ=255)
   gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg                                 <  1:1042783/35‑1 (MQ=255)
   gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg                                 >  1:4169277/1‑35 (MQ=255)
   gCATTGCCGAACTAAACGGCGAAGGCGAAGTggcg                                 <  1:14363059/35‑1 (MQ=255)
    tccgatattttcgacggttttaactatgtTggcgg                                <  1:8319998‑M1/6‑1 (MQ=255)
    ctggatcaaacgccattctatgcggaatcctgcgg                                <  1:17316052‑M1/5‑1 (MQ=255)
    ctggatcaaacgccattctatgcggaatccggcgg                                >  1:9267522‑M1/31‑35 (MQ=255)
    cATTGCCGAACTAAACGGCGAAGGCGAAGTggcgg                                >  1:11062038/1‑35 (MQ=255)
    cATTGCCGAACTAAACGGCGAAGGCGAAGTggcgg                                <  1:12297684/35‑1 (MQ=255)
    cATTGCCGAACTAAACGGCGAAGGAGAAGTggcgg                                <  1:10707697/35‑1 (MQ=255)
     tggatcaaacgccattctatgcggaatccggctgg                               <  1:18629294‑M1/6‑4 (MQ=255)
     tggatcaaacgccattctatgcggaatccggcggg                               <  1:15349871‑M1/6‑1 (MQ=255)
     ccgatattttcgacggttttaactatgtTggcggg                               <  1:19379034‑M1/7‑1 (MQ=255)
     ccgatattttcgacggttttaactatgtTggcggg                               <  1:5060415‑M1/7‑1 (MQ=255)
     aTTGCCGAACTAAACGGCGAAGGCGAAGTggcggg                               >  1:12380438/1‑35 (MQ=255)
      ttGCCGAACTAAACGGCGAAGGCGAAGTggcgggc                              <  1:20432073/35‑1 (MQ=255)
      ttGCCGAACTAAACGGCGAAGGCGAAGTggcgggc                              <  1:15232428/35‑1 (MQ=255)
      ttGCCGAACTAAACGGCGAAGGCGAAGCggcgggg                              >  1:10164171/1‑34 (MQ=255)
      tgatcaaacgccattctatgcggaatccggcgggg                              <  1:18409497‑M1/7‑2 (MQ=255)
      cgatattttcgacggttttaactatgttggcggga                              <  1:9571015‑M1/8‑2 (MQ=255)
       gatcaaacgccattctatgcggaatccggcggggg                             <  1:4647489‑M1/8‑3 (MQ=255)
       gatcaaacgccattctatgcggaatccggcgggga                             <  1:20042682‑M1/8‑3 (MQ=255)
       gatcaaacgccattctatgcggaatccggcgggcg                             <  1:6416229‑M1/8‑1 (MQ=255)
        gCCGAACTAAACGGCGAAGGCGAAGTGgcgggcgg                            <  1:13407157/35‑1 (MQ=255)
        atcaaacgccattctatgcggaatccggcgggggg                            <  1:17487616‑M1/9‑4 (MQ=255)
        atattttcgacggttttaactatgttggcgggcgc                            <  1:5403952‑M1/10‑2 (MQ=255)
         tcaaacgccattctatgcggaatccGGcggggggg                           <  1:3898857‑M1/10‑1 (MQ=255)
         tcaaacgccattctatgcggaatccGGcgggcggg                           <  1:113830‑M1/10‑1 (MQ=255)
         ccGAACTAAACGGCGAAGGCGAAGTGGcgggcggg                           <  1:6052050/35‑1 (MQ=255)
         ccGAACTAAACGGAGAAGGCGAAGTGGcgggcggg                           <  1:12723045/35‑1 (MQ=255)
          caaacgccattctatgcggaatccGGCGGGGgggg                          <  1:5227141‑M1/11‑1 (MQ=255)
          caaacgccattctatgcggaatccGGCGGGCgggg                          <  1:15519318‑M1/11‑1 (MQ=255)
          caaacgccattctatgcggaatccGGCGGGCaggg                          <  1:5933957‑M1/11‑1 (MQ=255)
          cGAACTAAACGGCGAAGGCGAAGTGGCGGGGgggg                          >  1:17416978/1‑35 (MQ=255)
           ttttcgacggttttaactatgtTGGCGGGCGGggt                         <  1:3422707‑M1/13‑1 (MQ=255)
           gAACTAAACGGCGAAGGCGAAGTGGCGGGGggggg                         >  1:17387107/1‑34 (MQ=255)
           gAACTAAACGGCGAAGGCGAAGTGGCGGGGggggg                         >  1:7716256/1‑34 (MQ=255)
           gAACTAAACGGCGAAGGCGAAGTGGCGGGGggggg                         >  1:17964919/1‑34 (MQ=255)
           gAACGAGACGGCGAAGGCGAAGTGGCGGGCGGggt                         <  1:1803762/35‑1 (MQ=37)
             acgccattctatgcggaatccGGCGGGCGGggtgg                       <  1:9347955‑M1/14‑1 (MQ=255)
             acgccattctatgcggaatccGGCGGGCGGggtgg                       <  1:312772‑M1/14‑1 (MQ=255)
             acgccattctatgcggaatccGGCGGGCGGggtgg                       <  1:5311048‑M1/14‑1 (MQ=255)
             acgccattctatgcggaatccGGCGGGCCGggtgg                       <  1:19216221‑M1/14‑1 (MQ=255)
              cgccattctatgcggaatccGGCGGGCAgggtggc                      <  1:13744069‑M1/15‑2 (MQ=255)
              cTAAACGGCGAAGGTGAAGTGGCGGGCGGggtggt                      <  1:5960865/35‑1 (MQ=255)
               tAAACGGCGAAGGCGAAGTGGCGGGCGGggtggtc                     <  1:11942700/35‑2 (MQ=255)
               tAAACGGCGAAGGCGAAGTGGCGGGCGGGgtggtg                     <  1:15287797/35‑1 (MQ=255)
               tAAACGGCGAAGGCGAAGTGGCGGGCGGGgtggtg                     <  1:1882278/35‑1 (MQ=255)
                aaaCGGCGAAGGCGAAGTGGCGGGGGGgggggggg                    >  1:8155634/1‑32 (MQ=25)
                aaaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGa                    <  1:4465531/35‑1 (MQ=255)
                aaaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGa                    <  1:6766226/35‑1 (MQ=255)
                    tgcgaaggcgaagTGGCGGGCGGGGTGGTGATCCt                <  1:3334441/34‑1 (MQ=255)
                    ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt                <  1:16872517/35‑1 (MQ=255)
                    ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt                <  1:4221488/35‑1 (MQ=255)
                    ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCt                <  1:328195/35‑1 (MQ=255)
                     gcgaaggcgaagTGGCGGGCGGGGTGGTGATCCTg               <  1:12868442/35‑1 (MQ=255)
                          ggcgaagTGGCGGGCGGGGTGGTGATCCTGCGATc          <  1:1785312/35‑1 (MQ=255)
                           gcgaagTGGCGGGCGGGGTGGTGATCCTGCGATcc         <  1:10607013/35‑1 (MQ=255)
                            cgaagTGGCGGGCGGGGTGGTGATCCTGCGATCCg        <  1:14031774/35‑1 (MQ=255)
                             gaagTGGCGGGCGGGGTGGTGATCCTGCGATCCgg       <  1:6959695/35‑1 (MQ=255)
                             gaagTGGCGGGCGGGGTGGTGATCCTGCGATCCgg       <  1:17173489/35‑1 (MQ=255)
                              aagTGGCGGGCGGGGTGGTGATCCTGCGATCCGGc      <  1:2517084/35‑1 (MQ=255)
                               agTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCa     <  1:8580248/35‑1 (MQ=255)
                               agTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCa     <  1:18252069/35‑1 (MQ=255)
                                  ggcgggcgGGGGGGGGCTCCTGCGGACCGGCcaaa  >  1:660855/1‑35 (MQ=9)
                                  |                                  
GGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGCAAAA  >  REL606/580434‑580502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.