New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2017683 | 35 (0.340) | 14 (0.170) | 3/38 | NT | 18.8% | intergenic (‑178/+89) | yeeF/yeeY | predicted amino‑acid transporter/predicted DNA‑binding transcriptional regulator |
? | REL606 | = 2919373 | 93 (1.140) | intergenic (+6/+37) | idi/lysS | isopentenyl‑diphosphate delta‑isomerase/lysine tRNA synthetase, constitutive |
GTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2017645‑2017683 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAAC < REL606/2919373‑2919340 GTTTGAAGCAAAAAATAACCGACGCTGATGAAACG > 1:697839/1‑35 TTTGAAGCAAAAAATAACCGACGCTGATGAAACGT > 1:16845628/1‑35 TTTGAAGCAAAAAATAACCGACGCTGATGAAACGT > 1:15411166/1‑35 TTGAAGCAAAAAATAACCGACGCTGATGAAACGTC > 1:11198432/1‑35 TTGAAGCAAAAAATAACCGACGCTGATGAAACGTC > 1:4884183/1‑35 TGAAGCAAAAAATAACCGACGCTGATGAAACGTCG > 1:9767672/1‑35 TGAAGCAAAAAATAACCGACGCTGATGAAACGTCG > 1:1566639/1‑35 TGAAGCAAAAAATAACCGACGCTGATGAAACGTCG > 1:18642576/1‑35 TGAAGCAAAAAATAACCGACGCTGATGAAACGTCG > 1:17919033/1‑35 GAAGCAAAAAATAACCGACGCTGATGAAACGTCGG > 1:18311982/1‑35 AAGCAAAAAATAACCGACGCTGATGAAACGTCGGG > 1:10554303/1‑35 AAGCAAAAAATAACCGACGCTGATGAAACGTCGGG > 1:10668556/1‑35 AGCAAAAAATAACCGACGCTTATGAAACGTCGGGG > 1:2782853/1‑35 AGCAAAAAATAACCGACGCTGATGAAACGTCGGGG > 1:18456030/1‑35 AGCAAAAAATAACCGACGCTGATGAAACGTCGGGG > 1:14884115/1‑35 AGCAAAAAATAACCGACGCTGATGAAACGTCGGGG > 1:6752896/1‑35 GCAAAAAATAACCGACGCTGATGAAACGTCGGGGT > 1:13223610/1‑35 GCAAAAAATAACCGACGCTGATGAAACGTCGGGGT > 1:3748288/1‑35 CAAAAAATAACCGACGCTGATGAAACGTCGGGGTT > 1:19347786/1‑35 AAAAAATAACCGACGCTGATGAAACGTCGGGGTTT > 1:15289764/1‑35 AAAAAATAACCGACGCTGATGAAACGTCGGGGTTT > 1:13783270/1‑35 AAAATAACCGACGCTGATGAAACGTCGGGTTTTTg > 1:18455566/1‑34 AAAATAACCGACGCTGATGAAACGTCGGGGTTTTT > 1:16352585/1‑35 AAAATAACCGACGCTGATGAAACGTCGGGGTTTTT > 1:8859657/1‑35 AAAATAACCGACGCTGATGAAACGTCGGGGTTTTT > 1:14657661/1‑35 AAATAACCGACGCTGATGAAACGTCGGGGTTTTgt > 1:2611915/1‑33 AAATAACCGACGCTGATGAAACGTCGGGGTTTTgt > 1:5508404/1‑33 AAATAACCGACGCTGATGAAACGTCGGGGTTTTTg > 1:11931193/1‑34 AAATAACCGACGCTGATGAAACGTCGGGGTTTTTT > 1:15369435/1‑35 AAATAACCGACGCTGATGAAACGTCGGGGTTTTTT > 1:3466032/1‑35 AATAACCGACGCTGATGAAACGTCGGGGTTTTgtc > 1:19596341/1‑32 AATAACCGACGCTGATGAAACGTCGGGGTTTTTTt > 1:9333497/1‑34 ATAACCGACGCTGATGAAACGTCGGGGTTTTTTta > 1:17641764/1‑33 TAACCGACGCTGATGAAACGTCGGGGTTTTTTTAT > 1:3743737/1‑35 ACCGACGCTGATGAAACGTCGGGGTTTTTTTATTt > 1:9903151/1‑34 ggCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA < 1:2271413/33‑1 GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA < 1:18967905/35‑1 GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA < 1:278075/35‑1 GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA < 1:18209017/35‑1 GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA > 1:17968062/1‑35 GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA > 1:16438548/1‑35 GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA < 1:3834622/35‑1 GTCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGA < 1:445198/35‑1 TCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGAC < 1:5917915/35‑1 TCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGAC < 1:9505922/35‑1 TCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGAC > 1:8672898/1‑35 TCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGAC < 1:18538335/35‑1 TCGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGAC > 1:18722753/1‑35 CGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACA < 1:6864536/35‑1 CGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACA > 1:9081978/1‑35 CGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACA > 1:6147075/1‑35 CGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACA > 1:1509111/1‑35 CGGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACA > 1:10309701/1‑35 GGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAA > 1:4083073/1‑35 GGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAA < 1:18486562/35‑1 GGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAA > 1:17716208/1‑35 GGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAA > 1:17449606/1‑35 GGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAA > 1:11531696/1‑35 GGGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAA > 1:10960839/1‑35 GGGTTTTTTAATTGTGCTGCGCGAAAGCNGACAAN > 1:516685/1‑35 GGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAAC > 1:5411627/1‑35 GGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAAC > 1:18655976/1‑35 GTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2017645‑2017683 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggGGTTTTTTAATTGTGCTGCGCGAAAGCAGACAAC < REL606/2919373‑2919340 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |