New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 422127 = | 69 (0.670) | 8 (0.120) | 4/32 | NT | 15.8% | coding (187/948 nt) | cyoA | cytochrome o ubiquinol oxidase subunit II |
? | REL606 | 4480474 = | 39 (0.570) | coding (497/1191 nt) | intB | predicted integrase |
Only 100 of 117 total aligned reads displayed.
TTAATTGATTATAACCCGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTGTAATCGACAACATCGTCCC > REL606/4480440‑4480508 | ttgattgtcgttattcccgcaatcttgatggctgg > 1:16716276‑M2/35‑35 (MQ=255) ttgattgtcgttattcccgcaatcttgatggctgg > 1:6552802‑M2/35‑35 (MQ=255) ttgattgtcgttattcccgcaatcttgatggctgg > 1:659408‑M2/35‑35 (MQ=255) ttgattgtcgttattcccgcaatcttgatggctgg > 1:15279353‑M2/35‑35 (MQ=255) ttgattgtcgttattcccgcaatcttgatggctgg > 1:442479‑M2/35‑35 (MQ=255) ttgattgtcgttattcccgcaatcttgatggctgg > 1:10315029‑M2/35‑35 (MQ=255) ttAATTGTTTATAACCCGGCACAAGAGATGGCTgg > 1:766521/1‑35 (MQ=255) ttAATTGATTATAACCCGGCACAAGAGATGGCTgg > 1:18059636/1‑35 (MQ=255) ttAATTGATTATAACCCGGCACAAGAGATGGCTgg > 1:4933825/1‑35 (MQ=255) ttAATTGATTATAACCCGGCACAAGAGATGGCTgg < 1:1847484/35‑1 (MQ=255) ttAATTGATTATAACCCGGCACAAGAGATGGCTgg > 1:14838447/1‑35 (MQ=255) tgattgtcgttattcccgcaatcttgatggctggg > 1:6236969‑M2/34‑35 (MQ=255) tgattgtcgttattcccgcaatcttgatggctggg > 1:13461869‑M2/34‑35 (MQ=255) tAATTGATTATAACCCGGCACAAGAGATGGCTggg < 1:13995414/35‑1 (MQ=255) tAATTGATTATAACCCGGCACAAGAGATGGCTggg > 1:15854705/1‑35 (MQ=255) tAATTGATTATAACCCGGCACAAGAGATGGCTggg < 1:877238/35‑1 (MQ=255) tAATTGATTATAACCCGGCACAAGAGATGGCTggg < 1:12410968/35‑1 (MQ=255) gattgtcgttattcccgcaatcttgatggctgggg > 1:11324810‑M2/33‑35 (MQ=255) gattgtcgttattcccgcaatcttgatggctgggg > 1:10895186‑M2/33‑35 (MQ=255) gattgtcgttattcccgcaatcttgatggctgggg > 1:15346050‑M2/33‑35 (MQ=255) aaTTGATTATAACCCGGCACAAGAGATGGCTgggg > 1:3012107/1‑35 (MQ=255) aaTTGATTATAACCCGGCACAAGAGATGGCTgggg < 1:20175251/35‑1 (MQ=255) aaTTGATTATAACCCGGCACAAGAGATGGCTgggg > 1:2652639/1‑35 (MQ=255) attgtcgttattcccgcaatcttgatggctggggg > 1:3343076‑M2/32‑34 (MQ=255) attgtcgttattcccgcaatcttgatggctggggg > 1:16785081‑M2/32‑34 (MQ=255) attgtcgttattcccgcaatcttgatggctggggg > 1:18384973‑M2/32‑34 (MQ=255) attgtcgttattcccgcaatcttgatggctggggg > 1:19136938‑M2/32‑34 (MQ=255) attgtcgttattcccgcaatcttgatggctggggg > 1:5742913‑M2/32‑34 (MQ=255) attgtcgttattcccgcaatcttgatggctggggg > 1:2749446‑M2/32‑34 (MQ=255) attgtcgttattcccgcaatcttgatggctggggg > 1:15233919‑M2/32‑34 (MQ=255) attgtcgttattcccgcaatcttgatggctggggg > 1:15392298‑M2/32‑34 (MQ=255) aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc < 1:12858836/35‑1 (MQ=255) aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc < 1:18853336/35‑1 (MQ=255) aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc < 1:5548662/35‑1 (MQ=255) aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc > 1:14691034/1‑35 (MQ=255) aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc > 1:9788541/1‑35 (MQ=255) aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc > 1:1629264/1‑35 (MQ=255) aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc < 1:1554545/35‑1 (MQ=255) aTTGATTATAACCCGGCACAAGAGATGGCTGGGGc > 1:16895684/1‑35 (MQ=255) ttgtcgttattcccgcaatcttgatggctgggggg > 1:2641005‑M2/31‑33 (MQ=255) ttgtcgttattcccgcaatcttgatggctgggggg > 1:6131121‑M2/31‑33 (MQ=255) ttgtcgttattcccgcaatcttgatggctgggggg > 1:1885167‑M2/31‑33 (MQ=255) ttgtcgttattcccgcaatcttgatggctgggggg > 1:2950493‑M2/31‑33 (MQ=255) ttgtcgttattcccgcaatcttgatggctgggggg > 1:8680921‑M2/31‑33 (MQ=255) ttGATTATAACCCGGCACAAGAGATGGCTGGGGCg > 1:5935739/1‑35 (MQ=255) tgtcgttattcccgcaatcttgatggctggggggt > 1:18563728‑M2/30‑32 (MQ=255) tgtcgttattcccgcaatcttgatggctggggggt > 1:16350274‑M2/30‑32 (MQ=255) tGATTATAACCCGGCACAAGAGATGGCTGGGGCgg > 1:3866138/1‑35 (MQ=255) tGATTATAACCCGGCACAAGAGATGGCTGGGGCgg > 1:5628358/1‑35 (MQ=255) tGATTATAACCCGGCACAAGAGATGGCTGGGGCgg > 1:2391644/1‑35 (MQ=255) gtcgttattcccgcaatcttgatggctgGGGGGGt > 1:8049433‑M2/29‑35 (MQ=255) gATTATAACCCGGCACAAGAGATGGCTGGGTCggg > 1:3005936/1‑34 (MQ=255) gATTATAACCCGGCACAAGAGATGGCTGGGGCggg > 1:11804331/1‑34 (MQ=255) gATTATAACCCGGCACAAGAGATGGCTGGGGCggg > 1:16127759/1‑34 (MQ=255) gATTATAACCCGGCACAAGAGATGGCTGGGGCGGt < 1:19642361/35‑1 (MQ=255) tcgttattcccgcaatcttgatggctgGGGGGgtg > 1:9780545‑M2/28‑34 (MQ=255) tcgttattcccgcaatcttgatggctgGGGGGGtt > 1:20179805‑M2/28‑35 (MQ=255) tcgttattcccgcaatcttgatggctgGGGGGGtt > 1:3376620‑M2/28‑35 (MQ=255) aTTATAACCCGGCACAAGAGATGGCTGGGGCGGtt < 1:11996551/35‑1 (MQ=255) aTTATAACCCGGCACAAGAGATGGCTGGGGCGGtt < 1:9076289/35‑1 (MQ=255) ttATAACCCGGCACAAGAGATGGCTGGGGCggggg > 1:14942651/1‑32 (MQ=255) ttATAACCCGGCACAAGAGATGGCTGGGGCggggg > 1:17880239/1‑32 (MQ=255) ttATAACACGGCACAAGAGATGGCTGGGGCGGTTg < 1:5319010/35‑1 (MQ=255) cgttattcccgcaatcttgatggctgGGGGGGTTg > 1:616367‑M2/27‑35 (MQ=255) tataACCCGGCACAAGAGATGGCTTGGGCGGGTgg > 1:10377348/1‑34 (MQ=37) gttattcccgcaatcttgatggctgGGGGGGTTGc > 1:15946991‑M2/26‑35 (MQ=255) gttattcccgcaatcttgatggctgGGGGGGTTGc > 1:16715812‑M2/26‑35 (MQ=255) ataACCCGGCACAAGAGATGGCTGGGGCGGTTGCt < 1:6071869/35‑1 (MQ=255) ataACCCGGCACAAGAGATGGCTGGGGCGGTTGCt < 1:17933398/35‑1 (MQ=255) taACCCGGCACAAGAGATGGCTGGGGCGGTTGCtt < 1:2640555/35‑1 (MQ=255) taACCCGGCACAAGAGATGGCTGGGGCGGTTGCtt < 1:19667356/35‑1 (MQ=255) aaCCCGGCACAAGAGATGGCTGGGGCGGTTGCTTc < 1:5554282/35‑1 (MQ=255) aaCCCGGCACAAGAGATGGCTGGGGCGGTTGCTTc < 1:20375063/35‑1 (MQ=255) aaCCCGGCACAAGAGATGGCTGGGGCGGTTGCTTc < 1:907347/35‑1 (MQ=255) cccGGCACAAGAGATGGCTGGGGCGGTTGCTTCCt < 1:10952190/35‑1 (MQ=255) cccGGCACAAGAGATGGCTGGGGCGGTTGCTTCCt < 1:18666876/35‑1 (MQ=255) ccGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTg < 1:2435200/35‑1 (MQ=255) ccGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTg < 1:18795671/35‑1 (MQ=255) ccGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTg < 1:8630551/35‑1 (MQ=255) cGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTGt < 1:457814/35‑1 (MQ=255) cGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTGt < 1:13676252/35‑1 (MQ=255) cacaAGAGATGGCTGGGGCGGTTGCTTCCTGTAAt < 1:10148065/35‑1 (MQ=255) cacaAGAGATGGCTGGGGCGGTTGCTTCCTGTAAt < 1:9587706/35‑1 (MQ=255) cacaAGAGATGGCTGGGGCGGTTGCTTCCTGTAAt < 1:4552201/35‑1 (MQ=255) cacaAGAGATGGCTGGGGCGGTTGCTTCCTGTAAt < 1:4369954/35‑1 (MQ=255) cacaAGAGATGGCTGGGGCGGTTGCTTCCTGTAAt < 1:5945180/35‑1 (MQ=255) cacaAGAGATGGCTGGGGCGGTTGCTTCCTGTAAt < 1:19365591/35‑1 (MQ=255) agagATGGCTGGGGCGGTTGCTTCCTGTAATCGac < 1:8125972/35‑1 (MQ=255) gagaTGGCTGGGGCGGTTGCTTCCTGTAATCGaca < 1:4078946/35‑1 (MQ=255) gagaTGGCTGGGGCGGTTGCTTCCTGTAATCGaca < 1:15768922/35‑1 (MQ=255) gagaTGGCTGGGGCGGTTGCTTCCTGTAATCGaca < 1:6302908/35‑1 (MQ=255) tggctgGGGCGGTTGCTTCCTGTAATCGACAACAt < 1:1872209‑M2/29‑1 (MQ=255) tggctgGGGCGGTTGCTTCCTGTAATCGACAACAt < 1:6692275‑M2/29‑1 (MQ=255) tggctgGGGCGGTTGCTTCCTGTAATAGACAACAt < 1:1435247‑M2/29‑1 (MQ=255) ggctgGGGCGGTTGCTTCCTGTAATAGACAACATc < 1:11065160‑M2/30‑1 (MQ=255) gctgGGGCGGTTGCTTCCTGTAATCGACAACATCg < 1:13848248‑M2/31‑1 (MQ=255) gctgGGGCGGTTGCTTACTGTAATCGACAACATCg < 1:7191091‑M2/31‑1 (MQ=255) ctgGGGCGGTTGCTTCCTGTAATCGACAACATCGt < 1:7134872‑M2/32‑1 (MQ=255) ctgGGGCGGTTGCTTCCTGTAATCGACAACATCGt < 1:12637170‑M2/32‑1 (MQ=255) gggCGGTTGCTTCCTGTAATCGACAACATCGTccc > 1:15614280/1‑35 (MQ=255) | TTAATTGATTATAACCCGGCACAAGAGATGGCTGGGGCGGTTGCTTCCTGTAATCGACAACATCGTCCC > REL606/4480440‑4480508 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |