New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 368615255 (0.540)7 (0.070) 3/46 NT 10.7% coding (410/741 nt) yiaT hypothetical protein
?REL606 = 4031953 64 (0.650)intergenic (+238/+174) hemN/glnG coproporphyrinogen III oxidase/fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein

Only 100 of 258 total aligned reads displayed.

TGTGGAATACCGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTCCGCAGCCGC  >  REL606/3686126‑3686186
                          |                                  
 gtgGAATACCGATAGCTCCCCCACCCAGCCGTTGa                           >  1:11269094‑M1/1‑34 (MQ=255)
  tgGAATACCGATAGCTCCCCCACCCAGCCGTGGcg                          >  1:5327962/1‑34 (MQ=255)
   ggAATACCGATAGCTCCCCCACCCAGCCGTTGCTg                         >  1:8289471/1‑35 (MQ=255)
   ggAATACCGATAGCTCCCCCACCCAGCCGTTGCTg                         >  1:2093826/1‑35 (MQ=255)
      aTACCGATAGCTCCCCCACCCAGCCGTTGCTGTTa                      >  1:11899864/1‑35 (MQ=255)
       tACCGATAGCTCCCCCACCCAGCCGTTGCTGTTAt                     >  1:10428884/1‑35 (MQ=255)
         ccGATAGCTCCCCCCCCCAGCCGTTGCTGTTATcc                   <  1:18022507/35‑1 (MQ=255)
         ccGATAGCTCCCCCCCCCAGCCGTTGCTGTTATcc                   <  1:13824536/35‑1 (MQ=255)
         ccGATAGCTCCCCCACCCAGCCGTTGCTGTTAtac                   >  1:15063573/1‑33 (MQ=255)
          cGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCa                  >  1:4681629/1‑35 (MQ=255)
          cGATAGCCCCCCCCCCCAGCCGTTGCTGTTATCCa                  <  1:7359730/35‑1 (MQ=25)
           gATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAg                 >  1:3044586/1‑35 (MQ=255)
           gATAGCCCCCCCCCCCAGCCGTTGCTGTTATCCAg                 <  1:10510423/35‑1 (MQ=25)
            aTAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGa                >  1:1625294/1‑35 (MQ=255)
             tAGCTCCNCCACCCAGCCGTTGCTGTTATCCAGaa               >  1:16801621/1‑35 (MQ=255)
              aGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAAc              >  1:14723100/1‑35 (MQ=255)
               gcccccccCCCCAGCCGTTGCTGTTATCCAGAACg             <  1:6891284/32‑1 (MQ=25)
                cTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGt            >  1:6120009/1‑35 (MQ=255)
                 tCCCCCCCCCAGCCGTTGCTGTTATCCAGAACGTc           <  1:12063569/35‑1 (MQ=255)
                 cccccccCCCAGCCGTTGCctgatgcgacgcgtaa           >  1:20315824‑M2/2‑19 (MQ=255)
                  cccccCCCCtgccgttgctgccgtgctgtgtgccg          <  1:10378141‑M1/35‑27 (MQ=255)
                  cccccCCCCAGCCGTTGtaggcctgataagacgcg          <  1:1655315‑M1/35‑19 (MQ=255)
                  cccccCCCCAGCCGTTGtaggcctgataagacgcg          <  1:4446339‑M1/35‑19 (MQ=255)
                  cccccCCCCAGCCGTTGCctgatgcgacgcgtaat          >  1:15859047‑M2/1‑18 (MQ=255)
                  cccccCCCCAGCCGTTGCctgatgcgacgcgtaat          >  1:2536266‑M2/1‑18 (MQ=255)
                  cccccCCCCAGCCGTTGCctgatgcgacgcgtaat          >  1:1003579‑M2/1‑18 (MQ=255)
                   ccccCCCCAGCCGTTGgcgatccggttcggccacg         <  1:4292959‑M1/35‑20 (MQ=255)
                   ccccCCCCAGCCGTTGgcgatccggttcggccacg         <  1:12422903‑M1/35‑20 (MQ=255)
                   ccccCCCCAGCCGTTGgcgatccggttcggccacg         <  1:8331632‑M1/35‑20 (MQ=255)
                   ccccCCCCAGCCGTTGCctgatgcgacgctgtgcg         >  1:2762524‑M2/1‑17 (MQ=255)
                   ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg         >  1:18881135‑M2/1‑17 (MQ=255)
                   ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg         >  1:17035659‑M2/1‑17 (MQ=255)
                   ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg         >  1:12150379‑M2/1‑17 (MQ=255)
                   ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg         >  1:12611706‑M2/1‑17 (MQ=255)
                   ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg         >  1:1310974‑M2/1‑17 (MQ=255)
                   ccccACCCAGCCGTTGCTGTTATCCAGAACGTccg         >  1:12031214/1‑35 (MQ=255)
                   ccccACCCAGCCGTTGCTGTTATCCAGAACGTccg         >  1:15045961/1‑35 (MQ=255)
                   ccccACCCAGCCGTTGCTGTTATCCAGAACGTccg         >  1:18183785/1‑35 (MQ=255)
                    cccccccaGCCGTTGgcgatccggttcggccacgg        <  1:6308722‑M1/35‑21 (MQ=255)
                    cccccccaGCCGTTGgcgatccggttcggccacgg        <  1:15581129‑M1/35‑21 (MQ=255)
                    cccccccaGCCGTTGCctgatgcgacgcgtaatgc        >  1:7228551‑M2/1‑16 (MQ=255)
                    cccccccaGCCGTTGCctgatgcgacgcgtaatgc        >  1:18798418‑M2/1‑16 (MQ=255)
                    cccccccaGCCGTTGCctgatgcgacgcgtaatgc        >  1:4021739‑M2/1‑16 (MQ=255)
                    cccccccaGCCGTTGCctgatgcgacgcgtaatgc        >  1:10070073‑M2/1‑16 (MQ=255)
                     cccccctgccgttgctgccgtgctgtgtgccgcaa       <  1:806310‑M1/32‑30 (MQ=255)
                     ccccccagccGTTGgcgatccggttcggccacgga       <  1:14642477‑M1/32‑22 (MQ=255)
                     ccccccaGCCGTTGCctgatgcgacgctgtgcgtc       >  1:6622346‑M2/1‑15 (MQ=255)
                     ccccccaGCCGTTGCctgatgcgacgcgtaatgcg       >  1:11644750‑M2/1‑15 (MQ=255)
                      ccgccagccGTTGCctgatgcgacgctgtgcgtct      >  1:899040‑M2/4‑14 (MQ=255)
                      ccgccagccGTTGCctgatgcgacgctgtgcgtct      >  1:1522519‑M2/4‑14 (MQ=255)
                      ccgccagccGTTGCctgatgcgacgcgtaatgcgt      >  1:16385775‑M2/4‑14 (MQ=255)
                      cccccagcCGTTGCctgatgcgacgctgtgcgtct      >  1:5958548‑M2/3‑14 (MQ=255)
                      cccccagcCGTTGCctgatgcgacgctgtgcgtct      >  1:6032294‑M2/3‑14 (MQ=255)
                      cccccagcCGTTGCctgatgcgacgctgtgcgtct      >  1:7458274‑M2/3‑14 (MQ=255)
                      cccccagcCGTTGCctgatgcgacgcgtaatgcgt      >  1:1776677‑M2/3‑14 (MQ=255)
                      cccccagcCGTTGCctgatgcgacgcgtaatgcgt      >  1:10314786‑M2/3‑14 (MQ=255)
                      cccccagcCGTTGCctgatgcgacgcgtaatgcgt      >  1:6955427‑M2/3‑14 (MQ=255)
                      cacccaGCCGTTGCTGTTATCCAGAACGGccgccg      >  1:18277765/1‑33 (MQ=25)
                       cgccagcCGTTGCctgatgcgacgctgtgcgtctt     >  1:19234890‑M2/3‑13 (MQ=255)
                       ccccagCCGTTGtaggcctgataagacgcgcaagc     <  1:7568299‑M1/34‑24 (MQ=255)
                       ccccagCCGTTGgcgatccggttcggccacggaat     <  1:17449316‑M1/34‑24 (MQ=255)
                       ccccagCCGTTGgcgatccggttcggccacggaat     <  1:15350068‑M1/34‑24 (MQ=255)
                       ccccagCCGTTGgagatccggttcggccacggaat     <  1:20506821‑M1/34‑24 (MQ=255)
                       ccccagCCGTTGCctgatgcgacgcgtaatgcgtc     >  1:6784030‑M2/2‑13 (MQ=255)
                       ccccagCCGTTGCctgatgcgacgcgtaatgcgtc     >  1:14208247‑M2/2‑13 (MQ=255)
                       ccccagCCGTTGCctgatgcgacgcgtaatgcgtc     >  1:3352112‑M2/2‑13 (MQ=255)
                       ccccagCCGTTGCctgatgcgacgcgtaatgcgtc     >  1:18925396‑M2/2‑13 (MQ=255)
                       ccccagCCGTTGCctgatgcgacgcgtaatgcgtc     >  1:14330618‑M2/2‑13 (MQ=255)
                       ccccagCCGTTGCctgatgcgacgcgtaatgcgtc     >  1:16024353‑M2/2‑13 (MQ=255)
                       ccccagCCGTTGCctgatgcgacgcgtaatgcgtc     >  1:575924‑M2/2‑13 (MQ=255)
                       ccccagCCGTTGCctgatgcgacgcgtaatgcgtc     >  1:9327112‑M2/2‑13 (MQ=255)
                       acccaGCCGTTGCTGTTATCCAGAACGTccgcagc     >  1:17924398/1‑35 (MQ=255)
                       acccaGCCGCTGCTGTTATCCAGAACGTccgcagc     >  1:1292172/1‑35 (MQ=255)
                        cccaGCCGTTGtaggcctgataagacgcgcaagcg    <  1:9803264‑M1/35‑25 (MQ=255)
                        cccaGCCGTTGtaggcctgataagacgcgcaagcg    <  1:9533212‑M1/35‑25 (MQ=255)
                        cccaGCCGTTGCctgatgcgacgctgtgcgtctta    >  1:3940467‑M2/1‑12 (MQ=255)
                        cccaGCCGTTGCctgatgcgacgcgtaatgcgtct    >  1:16673115‑M2/1‑12 (MQ=255)
                        cccaGCCGTTGCctgatgcgacgcgtaatgcgtct    >  1:2648281‑M2/1‑12 (MQ=255)
                        cccaGCCGTTGCctgatgcgacgcgtaatgcgtct    >  1:4901450‑M2/1‑12 (MQ=255)
                         ccaGCCGTTGtaggcctgataagacgcgcaagcgt   <  1:783597‑M1/35‑26 (MQ=255)
                         ccaGCCGTTGgcgatccggttcggccacggaataa   <  1:19083427‑M1/35‑26 (MQ=255)
                         ccaGCCGTTGgcgatccggttcggccacggaataa   <  1:7333455‑M1/35‑26 (MQ=255)
                         ccaGCCGTTGCctgatgcgacgctgtgcgtcttat   >  1:19661338‑M2/1‑11 (MQ=255)
                         ccaGCCGTTGCctgatgcgacgctgtgcgtcttat   >  1:2405370‑M2/1‑11 (MQ=255)
                         ccaGCCGTTGCctgatgcgacgcgtaatgcgtctt   >  1:5565549‑M2/1‑11 (MQ=255)
                         ccaGCCGTTGCctgatgcgacgcgtaatgcgtctt   >  1:17345753‑M2/1‑11 (MQ=255)
                         ccaGCCGTTGCctgatgcgacgcgtaatgcgtctt   >  1:3450832‑M2/1‑11 (MQ=255)
                          ctgccgttgctgccgtgctgtgtgccgcaatgatt  <  1:10761643‑M1/35‑35 (MQ=255)
                          caGCCGTTGtaggcctgataagacgcgcaagcgtc  <  1:3316719‑M1/35‑27 (MQ=255)
                          caGCCGTTGtaggcctgataagacgcgcaagcgtc  <  1:4545082‑M1/35‑27 (MQ=255)
                          caGCCGTTGgcgatccggttcggccacggaataag  >  1:4800662‑M1/1‑9 (MQ=255)
                          caGCCGTTGgcgatccggttcggccacggaataag  >  1:13455727‑M1/1‑9 (MQ=255)
                          caGCCGTTGgcgatccggttcggccacagaataag  >  1:19968796‑M1/1‑9 (MQ=255)
                          caGCCGTTGCctgatgcgacgctgtgcgtcttatc  >  1:14450493‑M2/1‑10 (MQ=255)
                          caGCCGTTGCctgatgcgacgctgtgcgtcttatc  >  1:349446‑M2/1‑10 (MQ=255)
                          caGCCGTTGCctgatgcgacgcgtaatgcgtctta  <  1:13702453‑M2/35‑26 (MQ=255)
                          caGCCGTTGCctgatgcgacgcgtaatgcgtctta  >  1:11391053‑M2/1‑10 (MQ=255)
                          caGCCGTTGCctgatgcgacgcgtaatgcgtctta  >  1:14115329‑M2/1‑10 (MQ=255)
                          caGCCGTTGCctgatgcgacgcgtaatgcgtctta  >  1:17485590‑M2/1‑10 (MQ=255)
                          caGCCGTTGCctgatgcgacgcgtaatgcgtctta  >  1:14861125‑M2/1‑10 (MQ=255)
                          |                                  
TGTGGAATACCGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTCCGCAGCCGC  >  REL606/3686126‑3686186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.