Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,990 IS150 (+) +3 bp 100% intergenic (‑32/‑496) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16990 =0 (0.000)81 (0.790) 38/48 NT 100% intergenic (‑32/‑498) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 590471 NA (NA)noncoding (1977/1977 nt) IS150 repeat region
* ? REL606 = 169920 (0.000)58 (0.560) 29/48 NT 100% intergenic (‑34/‑496) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 111 total aligned reads displayed.

GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTG  >  REL606/590440‑590505
                               |                                   
gtTTAACTGTCCAACTTTTTGGGGTCAGTACAccc                                 <  1:3139012/35‑1 (MQ=38)
gtTTAACTGTCCAACTTTTTGGGGTCAGTACAccc                                 >  1:6191215/1‑35 (MQ=38)
 tttAACTGTCCAACTTTTTGGGGTCAGTACAcccc                                >  1:18416705/1‑34 (MQ=38)
 tttAACTGTCCAACTTTTTGGGGTCAGTACACCCt                                <  1:2644291/35‑1 (MQ=38)
 tttAACTGTCCAACTTTTTGGGGTCAGTACACCCt                                >  1:3350905/1‑35 (MQ=38)
 tttAACTGTCCAACTTTTTGGGGTCAGTACACCCt                                <  1:3613019/35‑1 (MQ=38)
 tttAACTGTCCAACTTTTTGGGGTCAGTACACCCt                                <  1:1244522/35‑1 (MQ=38)
 tttAACTGTCCAACTTTTTGGGGTCAGTACACCCt                                >  1:17931190/1‑35 (MQ=38)
 ttcaaCTGTCCAACTTTTTGGGGTCAGTACACCCt                                <  1:3811043/32‑1 (MQ=255)
  ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTg                               <  1:5789950/35‑1 (MQ=38)
  ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTg                               <  1:13043217/35‑1 (MQ=38)
  ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTg                               <  1:5027842/35‑1 (MQ=38)
  ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTg                               >  1:16143237/1‑35 (MQ=38)
  ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTg                               <  1:17618604/35‑1 (MQ=38)
  ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTg                               >  1:7996049/1‑35 (MQ=38)
  ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTg                               >  1:8937797/1‑35 (MQ=38)
  ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTg                               >  1:910266/1‑35 (MQ=38)
   tAACTGTCCATCTTTTTGGGGTCAGTACACCCTgg                              >  1:222377/1‑35 (MQ=255)
   tAACTGTCCAACTTTTTGGGGTCAGTACACCCTgg                              <  1:1108839/35‑1 (MQ=40)
   tAACTGTCCAACTTTTTGGGGTCAGTACACCCTgg                              <  1:20463177/35‑1 (MQ=40)
    aaCTGTCCAACTTTTTGTGGTCAGTACAACCCggg                             <  1:801538/35‑1 (MQ=11)
    aaCTGTCCAACTTTTTGGGGTCAGTACACCCTggg                             <  1:18098231/35‑1 (MQ=255)
    aaCTGTCCAACTTTTTGGGGTCAGTACACCCTggg                             <  1:16395210/35‑1 (MQ=255)
    aaCTGTCCAACTTTTTGGGGTCAGTACACCCTggg                             <  1:5776239/35‑1 (MQ=255)
    aaCTGTCCAACTTTTTGGGGTCAGTACACCCTggg                             >  1:13290374/1‑35 (MQ=255)
     aCTGTCCAACTTTTTGGGGTCAGTACACCCTgggg                            >  1:4849035/1‑35 (MQ=255)
      cTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGc                           >  1:8687322/1‑35 (MQ=255)
      cTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGc                           >  1:14449308/1‑35 (MQ=255)
      cTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGc                           >  1:12103893/1‑35 (MQ=255)
      cTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGc                           >  1:15819083/1‑35 (MQ=255)
      cTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGc                           <  1:1284571/35‑1 (MQ=255)
      cTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGc                           >  1:1213249/1‑35 (MQ=255)
       tGTCCAACTTTTTGGGGTCAGTACACTCTGGGGCt                          <  1:5299748/35‑1 (MQ=255)
       tGTCCAACTTTTTGGGGTCAGTACACCCTTGGGCt                          >  1:3366574/1‑35 (MQ=255)
       tGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCt                          >  1:517931/1‑35 (MQ=255)
       tGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCt                          >  1:8779026/1‑35 (MQ=255)
       tGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCt                          >  1:4235965/1‑35 (MQ=255)
       tGTCCAACGTTTTGGGGTCAGTACACCCTGGGGCt                          <  1:10291019/35‑1 (MQ=255)
        gTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                         <  1:10960119/35‑1 (MQ=255)
        gTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                         <  1:10456491/35‑1 (MQ=255)
        gTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                         >  1:3939964/1‑35 (MQ=255)
        gTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                         <  1:17359370/35‑1 (MQ=255)
        gTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                         >  1:62365/1‑35 (MQ=255)
        gTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                         >  1:16317675/1‑35 (MQ=255)
        gTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                         <  1:5952861/35‑1 (MQ=255)
        gTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                         <  1:13044258/35‑1 (MQ=255)
         tCCAACTTTTTGGGGTCAGTACATCGTGCGGcaaa                        >  1:6610374/1‑32 (MQ=11)
         tCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGc                        >  1:9397405/1‑35 (MQ=255)
         tCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGc                        >  1:16305514/1‑35 (MQ=255)
          ccAACTTTTTGGGGTCTGTACACCCTGGGGCTGcc                       >  1:5850180/1‑35 (MQ=255)
          ccAACTTTTTGGGGTCAGTACAGCTCTGGGGCttc                        <  1:6906025/35‑3 (MQ=11)
          ccAACTTTTTGGGGTCAGTACACCCTGGGGCTGcc                       >  1:6976805/1‑35 (MQ=255)
          ccAACTTTTTGGGGTCAGTACACCCTGGGGCTGcc                       <  1:3776972/35‑1 (MQ=255)
          ccAACTTTTTGGGGTCAGTACACCCTGGGGCTGcc                       <  1:14379511/35‑1 (MQ=255)
          ccAACTTTTTGGGGTCAGTACACCCTGGGGCTGcc                       >  1:18904785/1‑35 (MQ=255)
          ccAACTTTTTGGGGTCAGTACACCCTGGGGCTGcc                       >  1:10003754/1‑35 (MQ=255)
           cAACTTTTTGGGTTCAGTACACCCTGGGGCTGCCa                      >  1:6101315/1‑35 (MQ=255)
           cAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCa                      >  1:19143241/1‑35 (MQ=255)
           cAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCa                      >  1:7948501/1‑35 (MQ=255)
           cAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCa                      >  1:12401187/1‑35 (MQ=255)
            aaCTTTTTGGGGTCAGTACACCCTGGGGCTGCCAc                     >  1:2572785/1‑35 (MQ=255)
            aaCTTTTTGGGGTCAGTACACCCTGGGGCTGCCAc                     >  1:4370929/1‑35 (MQ=255)
            aaCTTTTTGGGGTCAGTACACCCTGGGGCTGCCAc                     >  1:20396069/1‑35 (MQ=255)
            aaCTTTTTGGGGTCAGTACACCCTGGGGCTGCCAc                     >  1:12430578/1‑35 (MQ=255)
             aCTTTTTTGGGTCAGTACACCCTGGGGCTGCCACt                    >  1:19403834/1‑35 (MQ=255)
             aCTTTTTGGGGTCAGTACACCCTGGGGCTGCCACt                    >  1:8588726/1‑35 (MQ=255)
             aCTTTTTGGGGTCAGTACACCCTGGGGCTGCCACt                    >  1:19068426/1‑35 (MQ=255)
              cTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTc                   >  1:15647175/1‑35 (MQ=255)
               tttttGGGGTCAGTACACCCTGGGGCTGCCACTcc                  >  1:12750001/1‑35 (MQ=255)
               tttttGGGGTCAGTACACCCTGGGGCTGCCACTcc                  >  1:16245758/1‑35 (MQ=255)
                ttttGGGGTCAGTACACCCTGGGGCTGCCACTCCa                 >  1:9390806/1‑35 (MQ=255)
                ttttGGGGTCAGTACACCCTGGGGCTGCCACTCCa                 >  1:1409558/1‑35 (MQ=255)
                 tttGGGGTCATTACACCCTGGGGCTGCCACTCCaa                >  1:12148837/1‑35 (MQ=255)
                  ttGGGGTCAGTACACCCTGGGGCTGCCACTCCaaa               >  1:5129254/1‑35 (MQ=255)
                   tGGGGTCAGTACACCCTGGGGCTGCCACTCCaaga              >  1:6617338/1‑33 (MQ=255)
                   tGGGGTCAGTACACCCTGGGGCTGCCACTCCAAAc              >  1:6017187/1‑35 (MQ=255)
                   tGGGGTCAGTACACCCTGGGGCTGCCACTCCAAAc              >  1:12507751/1‑35 (MQ=255)
                    ggggTCAGTACACCCTGGGGCTGCCACTCCAAAcc             >  1:17320934/1‑35 (MQ=255)
                    ggggTCAGTACACCCTGGGGCTGCCACTCCAAAcc             >  1:11198913/1‑35 (MQ=255)
                    ggggTCAGTACACCCTGGGGCTGCCACTCCAAAcc             >  1:17740532/1‑35 (MQ=255)
                     gggTCAGTACACCCTGGTGCTGCCACTCCAAAccc            >  1:8571489/1‑35 (MQ=255)
                     gggTCAGTACACCCTGGGGCTGCCACTCCAAAccc            >  1:12206338/1‑35 (MQ=255)
                     gggTCAGTACACCCTGGGGCTGCCACTCCAAAccc            >  1:12905115/1‑35 (MQ=255)
                     gggTCAGTACACCCTGGGGCTGCCACCCCAAAccc            >  1:430329/1‑35 (MQ=255)
                     gggTCAGTACACCCGGGGCTGCCACTCCAAACCCg           >  1:2411562/1‑35 (MQ=255)
                       gTCAGTACACCCTGGGGCTGCCACTCCAAACCCGa          >  1:8336807/1‑35 (MQ=255)
                         cAGTACACCCTGGGGCTGCCACTCCAAACCCGAAc        >  1:5382104/1‑35 (MQ=255)
                         cAGTACACCCTGGCGCTGCCACTCCAAACCCGAAc        <  1:2535343/35‑1 (MQ=255)
                          aGTACACCCTGGGGCTGCCACTCCAAACCCGAACa       >  1:15687562/1‑35 (MQ=255)
                           gTACACCCTGGGGCTGCCACTCCAAACCCGAACaa      >  1:5711450/1‑35 (MQ=255)
                           gTACACCCTGGGGCTGCCACTCCAAACCCGAACaa      >  1:14917243/1‑35 (MQ=255)
                           gTACACCCTGGGGCTGCCACTCCAAACCCGAACaa      >  1:11346207/1‑35 (MQ=255)
                           gTACACCCTGGGGCTGCCACTCCAAACCCGAACaa      >  1:17683258/1‑35 (MQ=255)
                           gTACACCCTGGGGCTGCCACTCCAAACCCGAACaa      >  1:9074123/1‑35 (MQ=255)
                           ctccacCCGGGGGCTGCCACTCCAAACCCGAACaa      <  1:11032707/32‑1 (MQ=255)
                            tACACCCTGGGGCTGCCACTCCAAACCCGAACAAt     >  1:13362927/1‑35 (MQ=255)
                             acacCCTGGGGCTGCCACTCCAAACCCGAACAAtt    >  1:8025767/1‑35 (MQ=255)
                             acacCCTGGGGCTGCCACTCCAAACCCGAACAAtt    >  1:1757567/1‑35 (MQ=255)
                               acCCTGGGGCTGCCACTCCAAACCCGAACAATTTg  >  1:11197123/1‑35 (MQ=255)
                               acCCTGGGGCTACCACTCCAAACCCGAACAATTTg  >  1:10783749/1‑35 (MQ=255)
                               |                                   
GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTG  >  REL606/590440‑590505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.