New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 558248 = | 18 (0.180) | 6 (0.090) | 4/32 | NT | 19.7% | coding (185/294 nt) | ECB_00516 | conserved hypothetical protein |
? | REL606 | 3001100 = | 37 (0.540) | coding (1537/2847 nt) | flu | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
TTGCCACATCCCATGCACGTGTATCAAAACCGCCCCACCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/558289‑558248 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccacgAACCTCACCGGCCAGGGCGGCACCATCAATATGC > REL606/3001100‑3001133 TTGCCACNTCCCATGCACGTGTATCAAAACCGCCC > 1:15531745/1‑35 TTGCCACATCCCATGCACGTGTATCAAAACCGCCC > 1:16311343/1‑35 TTGCCACATCCCATGCACGTGTATCAAAACCGCCC > 1:2249229/1‑35 TTGCCACATCCCATGCACGTGTATCAAAACCGCCC > 1:18673013/1‑35 TGCCACATCCCATGCACGTGTATCAAAACCGCCCC > 1:13106729/1‑35 GCCACGTCCCATGCACGTGTATCAAAACCGCCCCA > 1:3780888/1‑35 CCACATCCCATGCACGTGTATCAAAACCGCCCCAC > 1:19066617/1‑35 CACATCCCATGCACGTGTATCAAAACCGCCCCACa > 1:10579384/1‑34 CACATCCCATGCACGTGTATCAAAACCGCCCCACC > 1:12750349/1‑35 CACATCCCATGCACGTGTATCAAAACCGCCCCACC > 1:16406102/1‑35 ACATCCCATGCACGTGTATCAAAACCGCGCCACCA > 1:18501749/1‑35 ACATCCCATGCACGTGTATCAAAACCGCCCCACCA > 1:6576126/1‑35 ACATCCCATGCACGTGTATCAAAACCGCCCCACCA > 1:11251802/1‑35 ACATCCCATGCACGTGTATCAAAACCGCCCCACCA > 1:14674951/1‑35 CATCCCATGCACGTGTATCAAAACCGCCCCACCAC > 1:11872392/1‑35 CCCATGCACGTGTATCAAAACCGCCCCACCACtgc > 1:11956163/1‑32 caAAAACCGCCCCACCACGAACCTCACCGGCCAGG < 1:6977799/33‑1 CAAAACCTCCCCACCACGAACCTCACCGGCCAGGG < 1:6061973/35‑1 CAAAAACGCCCCACCACGAACCTCACCGGCCAGGG < 1:15085725/35‑1 AAAAACGCCCCACCACGAACCTCACCGGCCAGGGC < 1:1951617/35‑1 aaaCGCCCCACCACGAACCTCACCGGCCAGGGCGG < 1:12257482/32‑1 AACCTCCCCACCACGAACCTCACCGGCCAGGGCGG < 1:4845574/35‑1 ACCCCCCCACCACGAACCTCACCGGCCAGGGCGGC < 1:3966123/35‑1 actCCCCACCACGAACCTCACCGGCCAGGGCGGCA < 1:5399816/32‑1 ccgCCCACCACGAACCTCACCGGCCAGGGCGGCAC < 1:2694370/32‑1 CCCCACCACGAACCTCACCGGCCAGGGCGGCACCA < 1:11020646/35‑1 CCACCACGAACCTCACCGGCCAGGGCGGCACCATC > 1:12920923/1‑35 CCACCACGAACCTCACCGGCCAGGGCGGCACCATC < 1:3791107/35‑1 CCACCACGAACCTCACCGGCCAGGGCGGCACCATC > 1:18939566/1‑35 CACCACGAACCTCACCGGCCAGGGCGGCACCATCA > 1:3885779/1‑35 CACCACGAACCTCACCGGCCAGGGCGGCACCATCA > 1:16547309/1‑35 CACCACGAACCTCACCGGCCAGGGCGGCACCATCA < 1:4214927/35‑1 CACCACGAACCTCACCGGCCAGGGCGGCACCATCA < 1:412958/35‑1 CACCACGAACCTCACCGGCCAGGGCGGCACCATCA < 1:8260426/35‑1 ACCACGAACCTCACCGGCCAGGGCGGCACCATCAA < 1:12744747/35‑1 ACCACGAACCTCACCGGCCAGGGCGGCACCATCAA < 1:197425/35‑1 ACCACGAACCTCACCGGCCAGGGCGGCACCATCAA > 1:9861478/1‑35 CCACGAACCTCACCGGCCAGGGCGGCACCATCAAT > 1:629482/1‑35 CCACGAACCTCACCGGCCAGGGCGGCACCATCAAT > 1:2879783/1‑35 CCACGAACCTCACCGGCCAGGGCGGCACCATCAAT < 1:15315935/35‑1 CCACGAACCTCACCGGCCAGGGCGGCACCATCAAT < 1:1454657/35‑1 aACGAACCTCACCGGCCAGGGCGGCACCATCAATA < 1:12566762/34‑1 CACGAACCTCACCGGCCAGGGCGGCACCATCAATA > 1:6059037/1‑35 CACGAACCTCACCGGCCAGGGCGGCACCATCAATA > 1:3290798/1‑35 CACGAACCTCACCGGCCAGGGCGGCACCATCAATA > 1:2736372/1‑35 CACGAACCTCACCGGCCAGGGCGGCACCATCAATA > 1:2570527/1‑35 CACGAACCTCACCGGCCAGGGCGGCACCATCAATA > 1:8114716/1‑35 CACGAACCTCACCGGCCAGGGCGGCACCATCAATA > 1:14039183/1‑35 CACGAACCTCACCGGCCAGGGCGGCACCATCAATA > 1:13376837/1‑35 CACGAACCTCACCGGCCAGGGCGGCACCATCAATA > 1:11838075/1‑35 ACGAACCTCACCGGCCAGGGCGGCACCATCAATAT < 1:8018887/35‑1 ACGAACCTCACCGGCCAGGGCGGCACCATCAATAT < 1:842587/35‑1 ACGAACCTCACCGGCCAGGGCGGCACCATCAATAT > 1:8667352/1‑35 ACGAACCTCACCGGCCAGGGCGGCACCATCAATAT > 1:2190732/1‑35 ACGAACCTCACCGGCCAGGGCGGCACCATCAATAT < 1:20171631/35‑1 ACGAACCTCACCGGCCAGGGCGGCACCATCAATAT > 1:15227045/1‑35 ACGAACCTCACCGGCCAGGGCGGCACCATCAATAT > 1:12338401/1‑35 CGAACCTCACCGGCCAGGGCGGCACCATCAATATG > 1:9392529/1‑35 CGAACCTCACCGGCCAGGGCGGCACCATCAATATG > 1:3115348/1‑35 CGAACCTCACCGGCCAGGGCGGCACCATCAATATG > 1:6303750/1‑35 CGAACCTCACCGGCCAGGGCGGCACCATCAATATG > 1:20534432/1‑35 CGAACCTCACCGGCCAGGGCGGCACCATCAATATG < 1:14778570/35‑1 GAACCTCACCGGCCAGGGCGGCACCATCAATATGC < 1:9899153/35‑1 GAACCTCACCGGCCAGGGCGGCACCATCAATATGC > 1:4659178/1‑35 GAACCTCACCGGCCAGGGCGGCACCATCAATATGC < 1:4079007/35‑1 GAACCTCACCGGCCAGGGCGGCACCATCAATATGC > 1:1002043/1‑35 TTGCCACATCCCATGCACGTGTATCAAAACCGCCCCACCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/558289‑558248 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccacgAACCTCACCGGCCAGGGCGGCACCATCAATATGC > REL606/3001100‑3001133 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |