Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,776,434 IS150 (–) +4 bp 56.9% intergenic (‑225/+56) pheS ← / ← pheM phenylalanyl‑tRNA synthetase alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1776434 =33 (0.390)48 (0.470) 28/48 NT 54.8% intergenic (‑225/+59) pheS/pheM phenylalanyl‑tRNA synthetase alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 177643733 (0.390)39 (0.380) 21/48 NT 49.6% intergenic (‑228/+56) pheS/pheM phenylalanyl‑tRNA synthetase alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 158 total aligned reads displayed.

TTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTT  >  REL606/1776403‑1776470
                                  |                                 
ttttCAAAACGCGCATACAAAAAAAGCCTCCACTg                                   >  1:15794263/1‑35 (MQ=255)
tttcatcgtccaacaaaatgggtgcagtacaACTg                                   >  1:13709553‑M1/32‑35 (MQ=255)
tttcatcgtccaacaaaatgggtgcagtacaACTg                                   >  1:3946520‑M1/32‑35 (MQ=255)
 tttCAAAACGCGCATACAAAAAAAGCCTCCACTgg                                  >  1:5413099/1‑35 (MQ=255)
  ttCAAAACGCGCATACAAAAAAAGCCTCCACTGtg                                 >  1:17360307‑M1/1‑33 (MQ=255)
  ttCAAAACGCGCATACAAAAAAAGCCTCCACTGtg                                 >  1:4959412‑M1/1‑33 (MQ=255)
  tcatcgtccaacaaaatgggtgcagtacaACTggg                                 >  1:3613682‑M1/30‑35 (MQ=255)
   catcgtccaacaaaatgggtgcagtacaACTGGGa                                <  1:15477130‑M1/7‑1 (MQ=255)
    cAAAACGCGCATACAAAAAAAGCCTCCACTGGGAg                               >  1:11900143/1‑35 (MQ=255)
    aaaaaCGCGAATAAAAAAAAAGCCTCCACTGGGAg                               <  1:7533124/34‑1 (MQ=37)
     tcgtccaacaaaatgggtgcagtacaACTGGGAgg                              <  1:3966370‑M1/9‑1 (MQ=255)
     tcgtccaacaaaatgggtgcagtacaACTGGGAgg                              >  1:4284606‑M1/27‑35 (MQ=255)
     tcgtccaacaaaatgggtgcagtacaACTGGGAgg                              <  1:9345312‑M1/9‑1 (MQ=255)
     aaaaCGCGCATACAAAAAAAGCCTCCACTGtgtac                              >  1:16680911‑M1/1‑30 (MQ=255)
      cgtccaacaaaatgggtgcagtacaACTGGGAGGc                             <  1:19418512‑M1/10‑1 (MQ=255)
      cgtccaacaaaatgggtgcagtacaACTGGGAGGc                             <  1:10999161‑M1/10‑1 (MQ=255)
      cgtccaacaaaatgggtgcagtacaACTGGGAGGc                             <  1:18670360‑M1/10‑1 (MQ=255)
      aaaCGCGCATACAAAAAAAGCCTCCACTGtgtact                             >  1:12805942‑M1/1‑29 (MQ=255)
       gtccaacaaaatgggtgcagtacaACTGGGAGGCt                            >  1:11854333‑M1/25‑35 (MQ=255)
       aaCGCGCATAAAAAAAAAGCCTCCACTGGGAGGCt                            <  1:19148808/35‑1 (MQ=255)
        tccaacaaaatgggtgcagtacaACTGGGAGGCtt                           >  1:20212648‑M1/24‑35 (MQ=255)
        tccaacaaaatgggtgcagtacaACTGGGAGGCtt                           <  1:913584‑M1/12‑1 (MQ=255)
        tccaacaaaatgggtgcagtacaACTGGGAGGCtt                           <  1:12015480‑M1/12‑1 (MQ=255)
        tccaacaaaatgggtgcagtacaACTGGGAGGCtt                           >  1:11142578‑M1/24‑35 (MQ=255)
        aCGCGCATACAAAAAAAGCCTCCACTGtgtactga                           >  1:3738545‑M1/1‑27 (MQ=255)
        aCGCGCATACAAAAAAAGCCTCCACTGtgtactga                           >  1:20390632‑M1/1‑27 (MQ=255)
        aCGCGCATACAAAAAAAGCCTCCACTGTGAGGCtt                           >  1:10846752/1‑35 (MQ=255)
        aCGCGCATACAAAAAAAGCCTCCACTGGGAGGCtt                           >  1:5701132/1‑35 (MQ=255)
        aCGCGCATACAAAAAAAGCCTCCACTGGGAGGCtt                           >  1:6742500/1‑35 (MQ=255)
        aCGCGCATACAAAAAAAGCCTCCACTGGGAGGCtt                           <  1:10509108/35‑1 (MQ=255)
         cgcgCATACAAAAAAAGCCTCCACTGtgtactgac                          >  1:103449‑M1/1‑26 (MQ=255)
         cgcgCATACAAAAAAAGCCTCCACTGGGAGGTttt                          >  1:1888215/1‑35 (MQ=255)
         cgcgCATACAAAAAAAGCCTCCACTGGGAGGCttt                          >  1:10835179/1‑35 (MQ=255)
          gcgcATACAAAAAAAGCCTCCACTGtgtactgacc                         >  1:14164902‑M1/1‑25 (MQ=255)
          gcgcATACAAAAAAAGCCTCCACTGGGATGCTTTc                         >  1:14562155/1‑35 (MQ=255)
          caacaaaatgggtgcagtacaACTGGTAGGCTTTc                         <  1:3100739‑M1/14‑1 (MQ=255)
          caacaaaatgggtgcagtacaACTGGGAGGCTTTc                         >  1:5409188‑M1/22‑35 (MQ=255)
           cgcATACAAAAAAAGCCTCCACTGtgtactgaccc                        >  1:19073783‑M1/1‑24 (MQ=255)
           aacaaaatgggtgcagtacaACTGGGAGGCTTTCa                        >  1:2040510‑M1/21‑35 (MQ=255)
           aacaaaatgggtgcagtacaACTGGGAGGCTTTCa                        <  1:1546505‑M1/15‑1 (MQ=255)
           aacaaaatgggtgcagtacaACTGGGAGGCTTTCa                        >  1:7639501‑M1/21‑35 (MQ=255)
            gcATACAAAAAAAGCCTCCACTGtgtactgacccc                       >  1:16001335‑M1/1‑23 (MQ=255)
            acaaaatgggtgcagtacaACTGGGAGGCTTTCAg                       >  1:6182024‑M1/20‑35 (MQ=255)
             caaaatgggtgcagtacaACTGGGAGGCTTTCAgg                      <  1:16379508‑M1/17‑1 (MQ=255)
              aaaatgggtgcagtacaACTGGGAGGCTTTCAGgc                     >  1:9690188‑M1/18‑35 (MQ=255)
              aaaatgggtgcagtacaACTGGGAGGCTTTCAGgc                     <  1:12949700‑M1/18‑1 (MQ=255)
              aTACAAAAAAAGCCTCCACTGGGAGGCTTTCAGgc                     >  1:17777704/1‑35 (MQ=255)
               aaatgggtgcagtacaACTGGGAGGCTTTCAGgcg                    >  1:468877‑M1/17‑35 (MQ=255)
               aaatgggtgcagtacaACTGGGAGGCTTTCAGgcg                    <  1:16843045‑M1/19‑1 (MQ=255)
                aaaaaaaaagcCTCCACTGtgtactgaccccaaaa                   <  1:10568634‑M1/33‑17 (MQ=255)
                 cAAAAAAGGCCTCCACTGGGAGGCTTTCAGGCGCt                  <  1:2664069/35‑1 (MQ=255)
                 atgggtgcagtacaACTGGGAGGCTTTCAGGCGCt                  <  1:8819443‑M1/21‑1 (MQ=255)
                 atgggtgcagtacaACTGGGAGGCTTTCAGGCGCt                  >  1:9109227‑M1/15‑35 (MQ=255)
                 aaaaaaaacCCTCCACTGtgtactgaccccaaaaa                  <  1:17696431‑M1/34‑18 (MQ=255)
                 aaaaaaaaGCCTCCACTGGGAGGCTTTCAGGCGCt                  <  1:16865649/34‑1 (MQ=255)
                  aaaaaaaGCCTCCACTGtgtactgaccccaaaaag                 >  1:8259866‑M1/1‑17 (MQ=255)
                  aaaaaaaGCCTCCACTGGGAGGCTTTCAGGCGCTg                 >  1:3019978/1‑35 (MQ=255)
                  aaaaaaaGCCTCCACTGGGAGGCTTTCAGGCGCTg                 >  1:20190152/1‑35 (MQ=255)
                   gggtgcagtacaACTGGGAGGCTTTCAGGCGCTGt                >  1:7125492‑M1/13‑35 (MQ=255)
                   aaaaaaGCCTCCACTGtgtactgaccccaaaaagt                >  1:14045052‑M1/1‑16 (MQ=255)
                   aaaaaaGCCTCCACTGGGAGGCTTTCAGGCGCTgg                >  1:13355779/1‑34 (MQ=255)
                    ggtgcagtacaACTGGGAGGCTTTCAGGCGctggg               <  1:8014551‑M1/24‑3 (MQ=255)
                    ggtgcagtacaACTGGGAGGCTTTCAGGCGCTGtt               >  1:5921708‑M1/12‑35 (MQ=255)
                     gtgcagtacaACTGGGAGGCTTTCAGGCgctggtt              <  1:11451836‑M1/25‑4 (MQ=255)
                     gtgcagtacaACTGGGAGGCTTTCAGGCGCTGttt              >  1:659176‑M1/11‑35 (MQ=255)
                     gtgcagtacaACTGGGAGGCTTTCAGGCGCTGttt              >  1:10104064‑M1/11‑35 (MQ=255)
                     aaaaGCCTCCACTGtgtactgaccccaaaaagttg              >  1:14929060‑M1/1‑14 (MQ=255)
                     aaaaGCCTCCACTGGGAGGCTTTCAGGCGCTgggt              >  1:12667259/1‑32 (MQ=255)
                     aaaaGCCTCCACTGGGAGGCTTTCAGGCGCTGgtt              >  1:11619698/1‑35 (MQ=255)
                     aaaaGCCTCCACTGGGAGGCTTTCAGGCGCTGgtt              >  1:12052765/1‑35 (MQ=255)
                     aaaaGCCTCCACTGGGAGGCTTTCAGGCGCTGgtt              >  1:16247834/1‑35 (MQ=255)
                      taaGCCTCCACTGGGAGGCTTTCAGGCGCTGtttt             <  1:2669619/34‑1 (MQ=255)
                      aaaGCCTCCACTGGGAGGCTTTCAGGCGCTGtttt             <  1:15135389/35‑1 (MQ=255)
                      aaaGCCTCCACTGGGAGGCTTTCAGGCGCTGgttt             >  1:2236632/1‑35 (MQ=255)
                       gcagtacaACTGGGAGGCTTTCAGGCGCTGTTTTc            >  1:20014316‑M1/9‑35 (MQ=255)
                       aaGCCTCCACTGtgtactgaccccaaaaagttgga            >  1:6397845‑M1/1‑12 (MQ=255)
                       aaGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTc            <  1:3400118/35‑1 (MQ=255)
                        aGCCTCAACTGtgtactgaccccaaaaagttggac           <  1:5899527‑M1/35‑25 (MQ=255)
                         nnctcNNCTGtgtactgaccccaaaaagttggaca          <  1:17347595‑M1/33‑26 (MQ=255)
                          ccTCCACTGtgtactgaccccaaaaagttggacag         <  1:13429188‑M1/35‑27 (MQ=255)
                          actCCACTGtgtactgaccccaaaaagttggacag         <  1:15208444‑M1/34‑27 (MQ=255)
                           tacaACTGGGAGGCTTTCAGGCGCTGTTTTCCGtt        >  1:1008219‑M1/5‑35 (MQ=255)
                           ccccacTGtgtactgaccccaaaaagttggacagt        >  1:9347595‑M1/3‑8 (MQ=255)
                           cTCCACTGtgtactgaccccaaaaagttggacagt        <  1:13448566‑M1/35‑28 (MQ=255)
                           cTCCACTGGGATGCTTTCAGGCGCTGTGTTACgct        >  1:11268854/1‑33 (MQ=21)
                           cTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGtn        <  1:16648650/35‑1 (MQ=255)
                            tCCACTGtgtactgaccccaaaaagttggacagtt       <  1:10346386‑M1/35‑29 (MQ=255)
                            acaaCTGGGAGGCTTTCAGGCGCTGGTTTTCGttt       >  1:10721552/4‑35 (MQ=25)
                             caACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTtc      >  1:7770015‑M1/3‑35 (MQ=255)
                              aaCTGGGAGGCTTTCAGGCGCTGGTTTTCGttttt     >  1:7975076/2‑33 (MQ=25)
                               cttGGGAGGCTTTCAGGCGCTGTTTTCCGTttctc    <  1:19787998/33‑1 (MQ=255)
                               aCTGGGAGGCTTTCAGGCGCTGTTTTCCGTttctc    <  1:8300879/35‑1 (MQ=255)
                               aCTGGGAGGCTTTCAGGCGCTGTTTTCCGTttctc    <  1:5783290/35‑1 (MQ=255)
                               aCTGGGAGGCTTTCAGGCGCTGGTTTTCGTttttc    >  1:14627776/1‑35 (MQ=25)
                                cTGGGAGGCTTTCAGGCGCTGTTTTCCGTttctct   <  1:19328133/35‑1 (MQ=255)
                                cTGGGAGGCTTTCAGGCGCTGTTTTCCGTttctct   <  1:19597912/35‑1 (MQ=255)
                                cTGGGAGGCTTTCAGGCGCTGGTTTTCGTttttct   >  1:13267706/1‑35 (MQ=25)
                                 tGGGAGGCTTTCAGGCGCTGTTTTCCGTttctctt  <  1:18283944/35‑1 (MQ=255)
                                 tGGGAGGCTTTCAGGCGCTGTTTTCCGTttctctt  <  1:1731910/35‑1 (MQ=255)
                                 tGGGAGGCTTTCAGGCGCTGGTTTTCGTttctctt  >  1:16383569/1‑35 (MQ=37)
                                  |                                 
TTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTT  >  REL606/1776403‑1776470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.