New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2883502 | NA (NA) | 22 (0.270) | 4/38 | NT | 28.1% | noncoding (791/1255 nt) | IS3 | repeat region |
? | REL606 | 3001880 = | 71 (0.690) | coding (2317/2847 nt) | flu | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
Only 100 of 288 total aligned reads displayed.
AGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCT > REL606/3001846‑3001914 | ggagacatcacgtgcttacgtacagatgaaggctg < 1:9549776‑M2/1‑1 (MQ=255) ggagacatcacgtacttacgtacagatgaaggctg > 1:16270318‑M2/35‑35 (MQ=255) ggagacatcacgtacttacgtacagatgaaggctg > 1:16456075‑M2/35‑35 (MQ=255) ggagacatcacgtacttacgtacagatgaaggctg < 1:18263018‑M2/1‑1 (MQ=255) ggagacatcacgtacttacgtacagatgaaggctg > 1:11536525‑M2/35‑35 (MQ=255) ggagacatcacgtacttacgtacagatgaaggctg > 1:20265846‑M2/35‑35 (MQ=255) ggagacatcacgtacttacgtacagatgaaggctg < 1:3533475‑M2/1‑1 (MQ=255) ggagacatcacgtacttacgtacagatgaaggctg > 1:5313558‑M2/35‑35 (MQ=255) ggagacatcacgtacttacgtacagatgaaggctg < 1:10036336‑M2/1‑1 (MQ=255) aGCGTCATCGGACAATAACGACTTCCGCGCCCggg > 1:8672907/1‑35 (MQ=255) aGCGTCATCGGACAATAACGACTTCCGCGCCCggg > 1:20044422/1‑35 (MQ=255) aGCGTCATCGGACAATAACGACTTCCGCGCCCggg > 1:19728862/1‑35 (MQ=255) aGCGTCATCGGACAATAACGACTTCCGCGCCCggg > 1:16839958/1‑35 (MQ=255) gagacatcacgtacttacgtacagatgaaggctgg > 1:5266242‑M2/34‑35 (MQ=255) gagacatcacgtacttacgtacagatgaaggctgg < 1:2660259‑M2/2‑1 (MQ=255) gagacatcacgtacttacgtacagatgaaggctgg < 1:19990734‑M2/2‑1 (MQ=255) gagacatcacgtacttacgtacagatgaaggctgg > 1:894970‑M2/34‑35 (MQ=255) gagacatcacgtacttacgtacagatgaaggctgg < 1:9479080‑M2/2‑1 (MQ=255) gagacatcacgtacttacggacagatgaaggctgg < 1:7742078‑M2/2‑1 (MQ=255) gCGTCATCGGACAATAACGACTTCCGCGCCCgggg > 1:14049451/1‑35 (MQ=255) cGTCATCGGACAATAACGACTTCCGCGCCCggggc > 1:6998144/1‑35 (MQ=255) agacatcacgtacttacgtacagatgaaggctggc > 1:6127861‑M2/33‑35 (MQ=255) agacatcacgtacttacgtacagatgaaggctggc < 1:5774863‑M2/3‑1 (MQ=255) agacatcacgtacttacgtacagatgaaggctggc < 1:3808562‑M2/3‑1 (MQ=255) agacatcacgtacttacgtacagatgaaggctggc > 1:15084700‑M2/33‑35 (MQ=255) agacatcacgtacttacgtacagatgaaggctggc > 1:4498490‑M2/33‑35 (MQ=255) gacatcacgtacttacgtacagatgaaggctggct < 1:6956594‑M2/4‑1 (MQ=255) gacatcacgtacttacgtacagatgaaggctggct < 1:8134167‑M2/4‑1 (MQ=255) gacatcacgtacttacgtacagatgaaggctggct < 1:8422818‑M2/4‑1 (MQ=255) gacatcacgtacttacgtacagatgaaggctggct > 1:10409709‑M2/32‑35 (MQ=255) gacatcacgtacttacgtacagatgaaggctggct > 1:9067311‑M2/32‑35 (MQ=255) gacatcacgtacttacgtacagatgaaggctggct < 1:11269830‑M2/4‑1 (MQ=255) gacatcacgtacttacgtacagatgaaggctggct < 1:15306033‑M2/4‑1 (MQ=255) gacatcacgtacttacgtacagatgaaggctggct < 1:14897149‑M2/4‑1 (MQ=255) acatcacgtacttacgtacagatgaaggctggctg > 1:6213108‑M2/31‑35 (MQ=255) acatcacgtacttacgtacagatgaaggctggctg > 1:978822‑M2/31‑35 (MQ=255) acatcacgtacttacgtacagatgaaggctggctg < 1:7555987‑M2/5‑1 (MQ=255) acatcacgtacttacgtacagatgaaggctggctg < 1:4963961‑M2/5‑1 (MQ=255) acatcacgtacttacgtacagatgaaggctggctg > 1:17989407‑M2/31‑35 (MQ=255) acatcacgtacttacgtacagatgaaggctggctg < 1:17851490‑M2/5‑1 (MQ=255) acatcacgtacttacgtacagatgaaggctggctg < 1:12920650‑M2/5‑1 (MQ=255) acatcacgtacttacgtacagatgaaggctggctg < 1:15571840‑M2/5‑1 (MQ=255) acatcacgtacttacgtacagatgaaggctggctg < 1:16070062‑M2/5‑1 (MQ=255) catcacgtacttacgtacagatgaaggctggctgg > 1:17160972‑M2/30‑35 (MQ=255) catcacgtacttacgtacagatgaaggctggctgg > 1:11875176‑M2/30‑35 (MQ=255) catcacgtacttacgtacagatgaaggctggctgg > 1:14230180‑M2/30‑35 (MQ=255) cATCGGACAATAACGACTTCCGCGCCCggggctgg > 1:14672738/1‑35 (MQ=255) atcacgtacttacgtacagatgaaggctggctggg > 1:3614348‑M2/29‑35 (MQ=255) atcacgtacttacgtacagatgaaggctggctggg > 1:11183888‑M2/29‑35 (MQ=255) aTCGGACAATAACGACTTCCGCGCCCggggctggg < 1:11986136/35‑1 (MQ=255) aTCGGACAATAACGACTTCCGCGCCCggggctggg > 1:4080110/1‑35 (MQ=255) tcacgtacttacgtacagatgaaggctggctgggt > 1:15991258‑M2/28‑34 (MQ=255) tcacgtacttacgtacagatgaaggctggctgggt > 1:10189500‑M2/28‑34 (MQ=255) tCGGACAATAACGACTTCCGCGCCCggggctgggg > 1:5636349/1‑35 (MQ=255) ccgACAATATCGACTTCCGCGCCCggggctggggc < 1:766631/33‑1 (MQ=38) cacgtacttacgtacagatgaatgctggctggggg > 1:17052146‑M2/27‑34 (MQ=255) cacgtacttacgtacagatgaaggctggctggtgc > 1:13978160‑M2/27‑35 (MQ=255) cacgtacttacgtacagatgaaggctggctgggtc > 1:3355642‑M2/27‑33 (MQ=255) cacgtacttacgtacagatgaaggctggctggggc > 1:9951162‑M2/27‑35 (MQ=255) aggACAATAACGACTTCCGCGCCCggggctggggc < 1:3159612/34‑1 (MQ=255) ggACAATAACGACTTCCGCGCCCggggctggggct > 1:18178103/1‑35 (MQ=255) acgtacttacgtacagatgaaggctggctgggtgc > 1:7064001‑M2/26‑32 (MQ=255) acgtacttacgtacagatgaaggctggctgggtct > 1:13490322‑M2/26‑35 (MQ=255) acgtacttacgtacagatgaaggctggctggggct > 1:3034021‑M2/26‑35 (MQ=255) acgtacttacgtacagatgaaggctggctgggcgc > 1:5892755‑M2/26‑32 (MQ=255) cgtacttacgtacagatgaaggctggctgggtctg > 1:14138947‑M2/25‑35 (MQ=255) cgtacttacgtacagatgaaggctggctggggttg > 1:7493801‑M2/25‑35 (MQ=255) gtacttacgtacagatgaaggctggctgggtctgg > 1:6593183‑M2/24‑35 (MQ=255) aCAATAACGACTTCCGCGCCCGGggctggggctgg > 1:2832426/1‑35 (MQ=255) aCAATAACGACTTCCGCGCCCGGggctggggctgg > 1:12423798/1‑35 (MQ=255) tacttacgtacagatgaaggctggctgggtctggc > 1:13046958‑M2/23‑35 (MQ=255) tacttacgtacagatgaaggctggctggggttggg > 1:507992‑M2/23‑34 (MQ=255) aaTAACGCCTTCCGCGCCCGGGGCTGGggctggct < 1:13072156/35‑1 (MQ=255) aaTAACGCCTTCCGCGCCCGGGGCTGGggctggct < 1:19632632/35‑1 (MQ=255) aaTAACGACTTCCGCGCCCGGggctggggctgggt > 1:8841151/1‑33 (MQ=255) aaTAACGACTTCCGCGCCCGGGGCTGGggctggct < 1:7357662/35‑1 (MQ=255) aTAACGACTTCCGCGCCCGGGGCTGGGgctggctg > 1:12614422/1‑35 (MQ=255) aaCGACTTCCGCGCCCGGGGCTGGGGCTGGCTggg > 1:1874490/1‑35 (MQ=255) aaCGACTTCCGCGCCCGGGGCTGGGGCTGGCTggg < 1:3182164/35‑1 (MQ=255) aCGACTTCCGCGCCCGGGGCTGGGGCTGGCTgggg > 1:10278260/1‑34 (MQ=255) cGACTTCCGCGCCCGGGGCTGGGGCTGGCTggggt > 1:10891105/1‑33 (MQ=255) gACTTCCGCGCCCGGGGCTGGGGCTGGGTggggtg > 1:19822600/1‑32 (MQ=25) gACCTCCGCGCCCGGGGCTGGGGCTGGCTGGGGTc > 1:6638543/1‑35 (MQ=37) aCTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCa < 1:4379568/35‑1 (MQ=255) cTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAc > 1:14427534/1‑35 (MQ=255) ttCCGCGCCCGGGGCTGGGGCTGGCTGGGGTCACt > 1:603035/1‑35 (MQ=255) ttCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACt < 1:19103912/35‑1 (MQ=255) tctcgcCCGGGGCTGGGGCTGGCTGGGCTCACTgg < 1:241035/32‑1 (MQ=255) ccGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTgg > 1:4746404/1‑35 (MQ=255) cgcgCCCGGGGCTGGGGCTGGCTGGGCTCCCTggg > 1:5601677/1‑34 (MQ=255) gcgcCCGGGGCTGGGGCTGGCTGGGCTCACTggga > 1:10061469/1‑33 (MQ=255) gcgcCCGGGGCTGGGGCTGGCTGGGCTCACTGGaa < 1:17332603/35‑1 (MQ=255) tctggggctggggctGGCTGGGCTCACTGGAAAcc < 1:105917/32‑1 (MQ=255) cccGGGGCTGGGGCTGGCTGGGGTCACTGGgaaac > 1:16816363/1‑33 (MQ=25) cccGGGGCTGGGGCTGGCTGGGCTCACTGGAAAcc < 1:17564274/35‑1 (MQ=255) ccGGGGCTGGGGCTGGCTGGGCTCACTGGaaaacc > 1:9178516/1‑32 (MQ=255) ccGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCg < 1:11425605/35‑1 (MQ=255) cGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCgg < 1:18298833/35‑1 (MQ=255) ggggctggggctGGCTGGGCTCACTGGAAACCGGt < 1:194642/35‑1 (MQ=255) gggctggggctgGCTGGGCTCACTGGAAACCGGTc > 1:20539191/1‑35 (MQ=255) | AGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCT > REL606/3001846‑3001914 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |