New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 947579 =44 (0.430)9 (0.090) 4/46 NT 13.7% coding (442/1767 nt) cydD fused cysteine transporter subunits of ABC superfamily: membrane component/ATP‑binding component
?REL606 = 3484563 71 (0.720)coding (887/1017 nt) rtcA RNA 3'‑terminal‑phosphate cyclase

AAGATCGCCACCACAATCAGCAACGGCACCGACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAG  >  REL606/947545‑947613
                                  |                                  
catgagggatgggcgaccgtaaattcccccgcgcc                                    <  1:8169128‑M1/1‑1 (MQ=255)
catgagggatgggcgaccgtaaattcccccgcgcc                                    >  1:16528948‑M1/35‑35 (MQ=255)
catgagggatgggcgaccgtaaattcccccgcgcc                                    <  1:14568140‑M1/1‑1 (MQ=255)
aaGATCGCCACCACAATCAGCAACGGCACCGacac                                    >  1:931229/1‑35 (MQ=255)
aaGATCGCCACCACAATCAGCAACGGCACCGacac                                    >  1:20310859/1‑35 (MQ=255)
aaGATCGCCACCACAATCAGCAACGGCACCGacac                                    >  1:8595591/1‑35 (MQ=255)
 aGATCGCCACCACAATCAGCAACGGCACCGACACt                                   >  1:16683239/1‑35 (MQ=255)
  gATCGCCACCACAATCAGCAACGGCACCGACACTg                                  >  1:19168901/1‑35 (MQ=255)
  gATCGCCACCACAATCAGCAACGGCACCGACACTg                                  >  1:4967135/1‑35 (MQ=255)
   aTCGCCACCACAATCAGCAACGGCACCGACACTGc                                 >  1:7280413/1‑35 (MQ=255)
   aTCGCCACCACAATCAGCAACGGCACCGACACTGc                                 >  1:12555882/1‑35 (MQ=255)
     cGCCACCACAATCAGCAACGGCACCGACACTGCCa                               >  1:16994887/1‑35 (MQ=255)
      gCCACCACAATCAGCAACGGCACCGACACTGCCAg                              >  1:12776274/1‑35 (MQ=255)
      gCCACCACAATCAGCAACGGCACCGACACTGCCAg                              >  1:4277658/1‑35 (MQ=255)
       ccaccaCAATCAGCAACGTCACCGACACTGCCAgc                             >  1:4693268/1‑35 (MQ=255)
        caccacAATCAGCAACGGCACCGACACTGCCAgcg                            >  1:14604049/1‑35 (MQ=255)
        caccacAATCAGCAACGGCACCGACACTGCCAgcg                            >  1:10367325/1‑35 (MQ=255)
         accacAATCAGCAACGGCACCGACACTGCCAgcgc                           >  1:16707802/1‑35 (MQ=255)
         accacAATCAGCAACGGCACCGACACTGCCAgcgc                           >  1:2844651/1‑35 (MQ=255)
          ccacAATCAGCAACGGCACCGACACTGCCAGCGcc                          >  1:17615611/1‑35 (MQ=255)
           cacaATCAGCAACGGCACCGACACTGCCAGCGCCa                         >  1:5287539/1‑35 (MQ=255)
           cacaATCAGCAACGGCACCGACACTGCCAGCGCCa                         >  1:11371862/1‑35 (MQ=255)
           cacaAACAGCAACGGCACCGACACTGCCAGCGCCa                         >  1:1764282/1‑35 (MQ=255)
            acaATCAGCAACGGCACCGACACTGCCAGCGCCAt                        >  1:3697900/1‑35 (MQ=255)
            acaATCAGCAACGGCACCGACACTGCCAGCGCCAt                        >  1:18561090/1‑35 (MQ=255)
             caATCAGCAACGGCACCGACACTGCCAGCGCCAtt                       >  1:3387118/1‑35 (MQ=255)
             caATCAGCAACGGCACCGACACTGCCAGCGCCAtt                       >  1:16087260/1‑35 (MQ=255)
             caATCAGCAACGGCACCGACACTGCCAGCGCCAtt                       >  1:4433532/1‑35 (MQ=255)
              aaTCAGCAACGGCACCGACACTGCCAGCGCCAttt                      >  1:3652151/1‑35 (MQ=255)
              aaTCAGCAACGGCACCGACACTGCCAGCGCCAttt                      >  1:18368194/1‑35 (MQ=255)
              aaTCAGCAACGGCACCGACACTGCCAGCGCCAttt                      >  1:6547807/1‑35 (MQ=255)
               aTCAGCAACGGCACCGACACTGCCAGCGCCATTTg                     >  1:3162495/1‑35 (MQ=255)
                tCAGCAACGGCACCGACACTGCCAGCGCGATTTGc                    >  1:18469694/1‑35 (MQ=255)
                tCAGCAACGGCACCGACACTGCCAGCGCCATTTGc                    >  1:13473330/1‑35 (MQ=255)
                 cAGCAACGGCACCTACACTGCCAGCGCCATTTTCg                   >  1:20439184/1‑35 (MQ=37)
                  aGCAACGGCACCGACACTGCCAGCGCCATTTGCgg                  >  1:6758167/1‑35 (MQ=255)
                  aGCAACGGCACCGACACTGCCAGCGCCATTTGCgg                  >  1:13042985/1‑35 (MQ=255)
                   gCAACGGCACCGACACTGCCAGCGCCATTTGCGGc                 >  1:17596882/1‑35 (MQ=255)
                   gCAACGGCACCGACACTGCCAGCGCCATTTGCGGc                 >  1:14309809/1‑35 (MQ=255)
                    cAACGGCACCGACACTGCCAGCGCCATTTGCGGCa                >  1:6609457/1‑35 (MQ=255)
                     aaCGGCACCGACACTGCCAGCGCCATTTGCTGCAg               >  1:14629027/1‑35 (MQ=255)
                     aaCGGCACCGACACTGCCAGCGCCATTTGCGGCAn               >  1:6727458/1‑35 (MQ=255)
                     aaCGGCACCGACACTGCCAGCGCCATTTGCGGCAg               >  1:10133200/1‑35 (MQ=255)
                     aaCGGCACCGACACTGCCAGCGCCATTTGCGGCAg               >  1:13685229/1‑35 (MQ=255)
                      aCGGCACCGACACTGCCAGCGCCATTTGCGGCAGa              >  1:2003959/1‑35 (MQ=255)
                       cGGCACCGACACTGCCAGCGCCATTTGCGGCAGAt             >  1:13370617/1‑35 (MQ=255)
                       cGGCACCGACACTGCCAGCGCCATTTGCGGCAGAt             >  1:14197196/1‑35 (MQ=255)
                        ggCACCGACACTGCCAGCGCCATTTGCGGCAGaaa            >  1:3118928/1‑33 (MQ=255)
                         cccccgcccCTGCCAGCGCCATTTGCGGCAGATAg           >  1:8142361‑M1/10‑35 (MQ=255)
                          ccccgcccCTGCCAGCGCCATTTGCGGCAGATAGc          >  1:7955494‑M1/9‑35 (MQ=255)
                          ccccgcccCTGCCAGCGCCATTTGCGGCAGATAGc          >  1:7841236‑M1/9‑35 (MQ=255)
                          ccccgcccCTGCCAGCGCCATTTGCGGCAGATAGc          >  1:85370‑M1/9‑35 (MQ=255)
                          cACCGACACTGCCAGCGCCATTTGCGGCAGATAGc          >  1:15809860/1‑35 (MQ=255)
                           cccgcccCTGCCAGCGCCATTTGCGGCAGATAGCg         >  1:8993110‑M1/8‑35 (MQ=255)
                           cccgcccCTGCCAGCGCCATTTGCGGCAGATAGCg         >  1:12936375‑M1/8‑35 (MQ=255)
                           aCCGACACTGCCAGCGCCATTTGCGGCAGATAGCg         >  1:15275200/1‑35 (MQ=255)
                            ccgcccCTGCCAGCGCCATTTGCGGCAGATAGCGt        >  1:7857771‑M1/7‑35 (MQ=255)
                            ccgcccCTGCCAGCGCCATTTGCGGCAGATAGCGt        >  1:15586514‑M1/7‑35 (MQ=255)
                            ccgcccCTGCCAGCGCCATTTGCGGCAGATAGCGt        >  1:15578649‑M1/7‑35 (MQ=255)
                            ccGACCCTGCCAGCGCCATTTGCGGCAGATAGCGt        <  1:18077833/35‑1 (MQ=255)
                            ccGACCCTGCCAGCGCCATTTGCGGCAGATAGCGt        <  1:7742593/35‑1 (MQ=255)
                            ccGACACTTCCAGCGCCATTTGCGGCAGATAGCGt        >  1:7214187/1‑35 (MQ=255)
                            ccGACACTGCCAGCGCCATTTGCGGCAGATAGCGt        >  1:13018773/1‑35 (MQ=255)
                            ccGACACTGCCAGCGCCATTTGCGGCAGATAGCGt        <  1:19596032/35‑1 (MQ=255)
                             cgcccCTGCCAGCGCCATTTGCGGCAGATAGCGTg       >  1:12107323‑M1/6‑35 (MQ=255)
                             cGACAGTGCCAGCGCCATTTGCGGCAGATAGCGTg       <  1:2645011/35‑1 (MQ=255)
                             cGACACTGCCAGCGCCATTTGCGGCAGGTAGCggg       >  1:1584679/1‑33 (MQ=37)
                              gACACTGCCAGCGCCATTTGCGGCAGATAGCgaaa      >  1:8159217/1‑32 (MQ=255)
                              gACACTGCCAGCGCCATTTGCGGCAGATAGCGTGc      >  1:8321560/1‑35 (MQ=255)
                              gACACTGCCAGCGCCATTTGCGGCAGATAGCGTGc      >  1:13022726/1‑35 (MQ=255)
                              gACACTGCCAGCGCCATTTGCGGCAGATAGCGCGc      >  1:20362634/1‑35 (MQ=255)
                              acccCTGCCAGCGCCATTTGCGGCAGATAGCGTGc      >  1:1819377‑M1/5‑35 (MQ=255)
                              acccCTGCCAGCGCCATTTGCGGCAGATAGCGTGc      >  1:19333036‑M1/5‑35 (MQ=255)
                               cccCTGCCAGCGCCATTTGCGGCAGATAGCGTGCa     >  1:8337776‑M1/4‑35 (MQ=255)
                                ccCTGCCAGCGCCATTTGCGGCAGATAGCGTGCAt    >  1:434466‑M1/3‑35 (MQ=255)
                                ccCTGCCAGCGCCATTTGCGGCAGATAGCGTGCAt    >  1:7648641‑M1/3‑35 (MQ=255)
                                cacTGCCAGCGCCATTTGCGTCAGATAGCGTGCAt    >  1:13093871/1‑35 (MQ=255)
                                cacTGCCAGCGCCATTTGCGTCAGATAGCGTGCAt    >  1:17205814/1‑35 (MQ=255)
                                cacTGCCAGCGCCATTTGCGGCAGATAGCGTGCAt    >  1:11607789/1‑35 (MQ=255)
                                cacTGCCAGCGCCATTTGCGGCAGATAGCGTGCAt    >  1:8268081/1‑35 (MQ=255)
                                cacTGCCAGCGCCATTTGCGGCAGATAGCGTGCAt    >  1:19496767/1‑35 (MQ=255)
                                cacTGCCAGCGCCATTTGCGGCAGATAGCGTGCAt    >  1:20308992/1‑35 (MQ=255)
                                 cCTGCCAGCGCCATTTGCGGCAGATAGCGTGCATa   >  1:4216318‑M1/2‑35 (MQ=255)
                                 cCTGCCAGCGCCATTTGCGGCAGATAGCGTGCATa   >  1:2862917‑M1/2‑35 (MQ=255)
                                 cCTGCCAGCGCCATTTGCGGCAGATAGCGTGCATa   >  1:2678884‑M1/2‑35 (MQ=255)
                                 acTGCCAGCGCCATTTGCGGCAGATAGCGCGCATa   >  1:1212766/1‑35 (MQ=255)
                                  CTGCCAGCGCCATTTGCGGCGGATAGCGTGCATAg  >  1:4780053‑M1/1‑35 (MQ=255)
                                  CTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAg  <  1:6544011‑M1/35‑1 (MQ=255)
                                  CTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAg  >  1:13163040‑M1/1‑35 (MQ=255)
                                  CTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAg  <  1:1457965‑M1/35‑1 (MQ=255)
                                  |                                  
AAGATCGCCACCACAATCAGCAACGGCACCGACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAG  >  REL606/947545‑947613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.