New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2880569 = | 60 (0.580) | 11 (0.140) | 4/36 | NT | 19.1% | coding (101/1230 nt) | yqeG | predicted transporter |
? | REL606 | 3287064 = | 48 (0.620) | coding (1197/2337 nt) | arcB | hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
Only 100 of 126 total aligned reads displayed.
GCAGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGTTTATTACTGCTCTG > REL606/2880535‑2880603 | accgcatcaggtcattaccgacgggacgcgtttac < 1:6005754‑M1/1‑1 (MQ=255) accgcatcaggtcattaccgacgggacgcgtttac < 1:835696‑M1/1‑1 (MQ=255) accgcatcaggtcattaccgacgggacgcgtttac < 1:1905398‑M1/1‑1 (MQ=255) accgcatcaggtcattaccgacgggacgcgtttac < 1:2000805‑M1/1‑1 (MQ=255) ccgcatcaggtcattaccgacgggacgcgtttaCg < 1:18605720‑M1/2‑1 (MQ=255) cAGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCg < 1:8362677/35‑1 (MQ=255) cAGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCg > 1:7436914/1‑35 (MQ=255) cAGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCg > 1:2718022/1‑35 (MQ=255) cgcatcaggtcattcccgacgggacgcgtttaCgg > 1:12715676‑M1/33‑35 (MQ=255) cgcatcaggtcattcccgacgggacgcgtttaCgg > 1:16058615‑M1/33‑35 (MQ=255) cgcatcaggtcattaccgacgggacgcgtttaCgg > 1:418492‑M1/33‑35 (MQ=255) aGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCgg > 1:12358327/1‑35 (MQ=255) aGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCgg > 1:14976152/1‑35 (MQ=255) aGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCgg > 1:7107511/1‑35 (MQ=255) aGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCgg < 1:7826302/35‑1 (MQ=255) aGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCgg > 1:17561328/1‑35 (MQ=255) ggCACGCTCTTCCTTCCTATTCAGTTAGGTTCGGc > 1:12152018/1‑35 (MQ=255) gCACGCTCTTCCTTGCTATTCAGTTAGGTTCGGCa < 1:13727128/35‑1 (MQ=255) gCACGCTCTTCCTTCCTATTCAGTTAGGTTCGGCa < 1:8386181/35‑1 (MQ=255) gCACGCTCTTCCTTCCTATTCAGTTAGGTTCGGCa > 1:15875393/1‑35 (MQ=255) catcaggtcattaccgacgggacgcgtttaCGGCa < 1:20391470‑M1/5‑1 (MQ=255) cACGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAg > 1:16396092/1‑35 (MQ=255) atcgggtcattaccgacgggacgcgtttaCGGCAg > 1:14437258‑M1/30‑35 (MQ=255) atcaggtcattaccgacgggacgcgtttaCGGCAg < 1:12452400‑M1/6‑1 (MQ=255) atcaggtcattaccgacgggacgcgtttaCGGCAg < 1:11907427‑M1/6‑1 (MQ=255) atcaggtcattaccgacgggacgcgtttaCGGCAg < 1:4450937‑M1/6‑1 (MQ=255) atcaggtcattaacgacgggacgcgtttaCGGCAg > 1:18477769‑M1/30‑35 (MQ=255) tcaggtcattaccgacgggacgcgtttaCGGCAgg < 1:18274853‑M1/7‑1 (MQ=255) tcaggtcattaccgacgggacgcgtttaCGGCAgg < 1:11398269‑M1/7‑1 (MQ=255) aCGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgg > 1:7507881/1‑35 (MQ=255) aCGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgg < 1:16414808/35‑1 (MQ=255) aCGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgg > 1:14658068/1‑35 (MQ=255) aCGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgg > 1:16253692/1‑35 (MQ=255) aCGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgg < 1:7110621/35‑1 (MQ=255) aCGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgg > 1:414971/1‑35 (MQ=255) caggtcattaccgacgggacgcgtttaCGGCAggg < 1:15579451‑M1/8‑1 (MQ=255) caggtcattaccgacgggacgcgtttaCGGCAggg < 1:20347724‑M1/8‑1 (MQ=255) caggtcattaccgacgggacgcgtttaCGGCAggg < 1:2335118‑M1/8‑1 (MQ=255) cGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAggg > 1:19544144/1‑35 (MQ=255) gCTCTTCCTTCCTATTCAGTTAGGTTCGGCAgggg > 1:17146836/1‑35 (MQ=255) ctctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGc < 1:159344/35‑1 (MQ=255) ctctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGc > 1:7721532/1‑35 (MQ=255) ctctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGc > 1:5826986/1‑35 (MQ=255) tctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGCt < 1:15782818/35‑1 (MQ=255) tctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGCt < 1:19319488/35‑1 (MQ=255) tctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGCt < 1:13645693/35‑1 (MQ=255) tctTCCTTCCTATTCAGTTAGGTTCGGCAGGGGCt < 1:6445023/35‑1 (MQ=255) gtcattaccgacgggacgcgtttaCGgcagggacc < 1:6724584‑M1/11‑4 (MQ=255) tcattaccgacgggacgcgtttaCGGCAGGggccg < 1:1350822‑M1/12‑3 (MQ=255) tcattaccgacgggacgcgtttaCGGCAGGggccc < 1:18002285‑M1/12‑3 (MQ=255) tcattaccgacgggacgcgtttaCGGCAGGGGCtg < 1:12085552‑M1/12‑1 (MQ=255) ttccttccTATTCAGTTAGGTTCGGCAGGGGCtgt < 1:4727930/35‑1 (MQ=255) ttccttccTATTCAGTTAGGTTCGGCAGGGGCtgg > 1:12644220/1‑34 (MQ=255) cattaccgacgggacgcgtttaCGGCAGGGGctgg < 1:52181‑M1/13‑2 (MQ=255) cattaccgacgggacgcgtttaCGGCAGGGGCtgt < 1:16954208‑M1/13‑1 (MQ=255) tccttcctATTCAGTTAGGTTCGGCAGGGGCtgtg < 1:12663510/35‑1 (MQ=255) tccttcctATTCAGTTAGGTTCGGCAGGGGCtgtg < 1:14007370/35‑1 (MQ=255) tccttcctATTCAGTTAGGTTCGGCAGGGGCtggg > 1:15913371/1‑33 (MQ=255) attaccgacgggacgcgtttaCGGCAGGGgctggg < 1:6864622‑M1/14‑3 (MQ=255) attaccgacgggacgcgtttaCGGCAGGGGCtgtg < 1:5312267‑M1/14‑1 (MQ=255) ttaccgacgggacgcgtttaCGGCAGGggctgggg < 1:12764582‑M1/15‑4 (MQ=255) ttaccgacgggacgcgtttaCGGCAGGGGCTGTgg < 1:3544434‑M1/15‑1 (MQ=255) taccgacgggacgcgtttaCGGCAGGGCCTGtggg < 1:15580750‑M1/16‑2 (MQ=255) cttcctATTCAGTTAGGTTCGGCAGGGGCTGTGGt < 1:20609870/35‑1 (MQ=255) cttcctATTCAGTTAGGTTCGGCAGGGGCTGTGGt < 1:2859243/35‑1 (MQ=255) cttcctATTCAGTTAGGTTCGGCAGGGGCTGGggg > 1:10419775/1‑34 (MQ=255) cttcctATTCAGTTAGGTTCGGCAGGGGCTGGggg > 1:11664105/1‑34 (MQ=255) ttcctATTCAGTTAGGTTCGGCAGGGGCTGGgggg > 1:14519935/1‑33 (MQ=38) accgacgggacgcgtttaCGGCAGGGGCTgtggga < 1:11471076‑M1/17‑3 (MQ=255) accgacgggacgcgtttaCGGCAGGGGCTgtggga < 1:2308832‑M1/17‑3 (MQ=255) tcctATTCAGTTAGGTTCGGCAGGGGCTGTGGTcc < 1:14001375/35‑1 (MQ=255) tcctATTCAGTTAGGTTCGGCAGGGGCTGGggggg > 1:4507652/1‑32 (MQ=38) cctATTCAGTTAGGTTCGGCAGGGGCTGTGGTCCt < 1:1130009/35‑1 (MQ=255) ctATTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTg < 1:19808905/35‑1 (MQ=255) ctATTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTg < 1:16573088/35‑1 (MQ=255) tATTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGt < 1:1406563/35‑1 (MQ=255) aTTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGtt < 1:1585395/35‑1 (MQ=255) aTTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGtt < 1:10671720/35‑1 (MQ=255) aTTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGtt < 1:17788632/35‑1 (MQ=255) ttCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGttt < 1:2189449/35‑1 (MQ=255) ttCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGttt < 1:13880820/35‑1 (MQ=255) ttCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGttt < 1:10858524/35‑1 (MQ=255) tCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGTtta < 1:12027624/35‑1 (MQ=255) cAGTTAGGTTCGGCAGGGGCTGTGGTCCTGTttat < 1:9141825/35‑1 (MQ=255) cAGTTAGGTTCGGCAGGGGCTGTGGTCCTGTttat < 1:9668827/35‑1 (MQ=255) cAGTTAGGTTCGGCAGGGGCTGTGGTCCTGTttat < 1:17667897/35‑1 (MQ=255) cAGTTAGGTTCAGCAGGGGCTGTGGTCCTGTttat < 1:12043009/35‑1 (MQ=255) aGTTAGGTTCGGCAGGGGCTGTGGTCCTGTttatt < 1:6548055/35‑1 (MQ=255) aGTTAGGTTCGGCAGGGGCTGTGGTCCTGTttatt < 1:16721530/35‑1 (MQ=255) aGTTAGGTTCGGCAGGGGCTGTGGTCCTGTttatt < 1:10189851/35‑1 (MQ=255) gTTAGGTTCGGCAGGGGCTGTGGTCCTGTttatta < 1:20034928/35‑1 (MQ=255) gTTAGGTTCGGCAGGGGCTGTGGTCCTGTttatta < 1:190488/35‑1 (MQ=255) ttAGGTTCGGCAGGGGCTGTGGTCCTGTTTATTAc < 1:8123182/35‑1 (MQ=255) tAGGTTCGGCAGGGGCTGTGGTCCTGTTTATTACt < 1:631163/35‑1 (MQ=255) gTTCGGCAGGGGCTGTGGTCCTGTTTATTACTGct < 1:9469420/35‑1 (MQ=255) ttCGGCAGGGGCTGTGGTCCTGTTTATTACTGctc < 1:3992254/35‑1 (MQ=255) ttCGGCAGGGGCTGTGGTCCTGTTTATTACTGctc < 1:12353155/35‑1 (MQ=255) tCGGCAGGGGCTGTGGTCCTGTTTATTACTGctct < 1:7018447/35‑1 (MQ=255) CGGCAGGGGCTGTGGTCCTGTTTATTACTGCTCTg > 1:19284041‑M1/1‑35 (MQ=255) CGGCAGGGGCTGTGGTCCTGTTTATTACTGCTCTg > 1:15725580‑M1/1‑35 (MQ=255) | GCAGGCACGCTCTTCCTTCCTATTCAGTTAGGTTCGGCAGGGGCTGTGGTCCTGTTTATTACTGCTCTG > REL606/2880535‑2880603 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |