New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 294957169 (0.670)15 (0.150) 5/46 NT 14.6% coding (834/996 nt) argK arginine/ornithine transport system ATPase
?REL606 = 3728925 109 (1.110)coding (59/960 nt) yibQ predicted polysaccharide deacetylase

Only 100 of 159 total aligned reads displayed.

AACAAGTGCGGCAACAACAATCGGTGGAATGGCTGCGTAAGCAGACCGAAGAAGAAGTACTGAATCACC  >  REL606/2949537‑2949605
                                  |                                  
aacaaGTGCGGCAACAACAATCGGTGGAATGGCTG                                    <  1:20335243‑M1/35‑1 (MQ=255)
aacaaGTGCGGCAACAACAATCGGTGGAATGGCTG                                    >  1:17045207‑M1/1‑35 (MQ=255)
 acaaGTGGGGCAACAACAATCGGTGGAATGGCTGc                                   <  1:1095937/35‑1 (MQ=255)
 acaaGTGCGGCAACAACAATCGGTGGAATGGCTGg                                   >  1:16009788‑M1/1‑34 (MQ=255)
 acaaGTGCGGCAACAACAATCGGTGGAATGGCTGc                                   <  1:2555277/35‑1 (MQ=255)
 acaaGGGCAGCAACAACAATCGGTGGAATGGCTGc                                   <  1:15036563/35‑1 (MQ=37)
  caaGTGCGGCAACAACAATCGGTGGAATGGCTGgg                                  >  1:9067321‑M1/1‑33 (MQ=255)
  caaGTGCGGCAACAACAATCGGTGGAATGGCTGgg                                  >  1:2656228‑M1/1‑33 (MQ=255)
  caaGTGCGGCAACAACAATCGGTGGAATGGCTGgg                                  >  1:11616438‑M1/1‑33 (MQ=255)
  caaGTGCGGCAACAACAATCGGTGGAATGGCTGCg                                  <  1:7141791/35‑1 (MQ=255)
  caaGTGCGGCAACAACAATCGGTGGAATGGCTGCg                                  <  1:16358930/35‑1 (MQ=255)
  caaGTGCGGCAACAACAATCGGTGGAATGGCTGCg                                  <  1:13741473/35‑1 (MQ=255)
   aaGTGCGGCAACAACAATCGGTGGAATGGCTGggg                                 >  1:6425052‑M1/1‑32 (MQ=255)
   aaGTGCGGCAACAACAATCGGTGGAATGGCTGggg                                 >  1:2797020‑M1/1‑32 (MQ=255)
   aaGTGCGGCAACAACAATCGGTGGAATGGCTGggg                                 >  1:176164‑M1/1‑32 (MQ=255)
   aaGTGCGGCAACAACAATCGGTGGAATGGCTGCGt                                 <  1:3273979/35‑1 (MQ=255)
   aaGTGCGGCAACAACAATCGGTGGAATGGCTGCGt                                 <  1:9573579/35‑1 (MQ=255)
   aaGTGCGGCAACAACAATAGGTGGAATGGCTGCGt                                 <  1:19277305/35‑1 (MQ=255)
    attGCGGCAACAACAATCGGTGGAATGGCTGCGTa                                <  1:696655/33‑1 (MQ=255)
     gTGCGGCAACAACAATCGGTGGAATGGCTGgggga                               >  1:9888343‑M1/1‑30 (MQ=255)
     gTGCGGCAACAACAATCGGTGGAATGGCTGCGTaa                               <  1:4406666/35‑1 (MQ=255)
     gTGCGGCAACAACAATCGGTGGAATGGCTGCGTaa                               <  1:3730719/35‑1 (MQ=255)
      tGCGGCAACAACAATCGGTGGAATGGCTGggggag                              >  1:5490969‑M1/1‑29 (MQ=255)
      tGCGGCAACAACAATCGGTGGAATGGCTGCGTAAg                              <  1:14422491/35‑1 (MQ=255)
      tGCGGCAACAACAATCGGTGGAATGGCTGCGTAAg                              <  1:15659892/35‑1 (MQ=255)
      tGCGGCAACAACAATCGGTGGAATGGATGCGTAAg                              <  1:7563209/35‑1 (MQ=255)
       gCGGCAACAACAATCGGTGGAATGGCTGCGTAAGc                             <  1:15116672/35‑1 (MQ=255)
       gCGGCAACAACAATCGGTGGAATGGCTGCGTAAGc                             <  1:19105067/35‑1 (MQ=255)
        cGGCAACAACAATCGGTGGAATGGCTGCGTAAGCa                            <  1:10184711/35‑1 (MQ=255)
        cGGCAACAACAATCGGTGGAATGGCTGCGTAAGCa                            <  1:9896498/35‑1 (MQ=255)
        cGGCAACAACAATCGGTGGAATGGCTGCGTAAGCa                            <  1:15079625/35‑1 (MQ=255)
        cGGCAACAACAATCGGTGGAATGGCTGCGTAAGCa                            <  1:15275745/35‑1 (MQ=255)
         ggCAACAACAATCGGTGGAATGGCTGgggggggag                           >  1:6426033‑M1/1‑26 (MQ=255)
         ggCAACAACAATCGGTGGAATGGCTGggggaggag                           >  1:17997799‑M1/1‑26 (MQ=255)
         ggCAACAACAATCGGTGGAATGGCTGCGTAAGCAg                           <  1:20516841/35‑1 (MQ=255)
         ggCAACAACAATCGGTGGAATGGCTGCGTAAGCAg                           <  1:13083619/35‑1 (MQ=255)
         ggCAACAACAATCGGTGGAATGGCTGCGTAAGCAg                           <  1:15281880/35‑1 (MQ=255)
         ggCAACAACAATAGGTGGAATGGCTGCGTAAGCAg                           <  1:9481474/35‑1 (MQ=255)
          gCAACAACAATCGGTGGAATGGCTGCGTAAGCAGa                          <  1:58205/35‑1 (MQ=255)
           caacaacaaTCGGTGGAATGGCTGggggaggagaa                         >  1:17955610‑M1/1‑24 (MQ=255)
           caacaacaaTCGGTGGAATGGCTGCGTAAGCAGAc                         <  1:14202881/35‑1 (MQ=255)
           caacaacaaTCGGTGGAATGGCTGCGTAAGCAGAc                         <  1:8223324/35‑1 (MQ=255)
            aacaacaaTCGGTGGAATGGCTGggggaggagagc                        >  1:9133808‑M1/1‑23 (MQ=255)
            aacaacaaTCGGTGGAATGGCTGCGTAAGCAGAcc                        <  1:11771751/35‑1 (MQ=255)
            aacaacaaTCGGTGGAATGGCTGCGTAAGCAGAcc                        <  1:7196972/35‑1 (MQ=255)
            aacaacaaTCGGTGGAATGGCTGCGTAAGCAGAcc                        <  1:7037070/35‑1 (MQ=255)
            aacaacaaTCGGTGGAATGGCTGCGTAAGCAGAcc                        <  1:13684694/35‑1 (MQ=255)
             acaataaTCGGTGGAATGGCTGggggaggagagcg                       >  1:2056057‑M1/1‑22 (MQ=255)
             acaacaaTCGGTGGAATGGCTGggggaggagaccc                       >  1:19103559‑M1/1‑22 (MQ=255)
             acaacaaTCGGTGGAATGGCTGggggaggagaacg                       >  1:11428225‑M1/1‑22 (MQ=255)
             acaacaaTCGGTGGAATGGCTGCGTAAGCAGACCg                       <  1:17004475/35‑1 (MQ=255)
              caacaaTCGGTGGAATGGCTGCGTAAGCAGACCga                      <  1:12524971/35‑1 (MQ=255)
                acaaTCGGTGGAATGGCTGCGTAAGCAGACCgaag                    <  1:19926732/35‑1 (MQ=255)
                acaaTCGGTGGAATGGCTGCGTAAGCAGACCgaag                    <  1:3643593/35‑1 (MQ=255)
                 caaTCGGTGGAATGGCTGCGTAAGCAGACCgaaga                   <  1:3320518/35‑1 (MQ=255)
                  aaTCGGTGGAATGGCTGCGTAAGCAGACCgaagaa                  <  1:19299746/35‑1 (MQ=255)
                  aaTCGGTGGAATGGCTGCGTAAGCAGACCgaagaa                  <  1:17302549/35‑1 (MQ=255)
                  aaTCGGTGGAATGGCTGCGTAAGCAGACCgaagaa                  <  1:11636976/35‑1 (MQ=255)
                  aaTCGGTGGAATGGCTGCGTAAGCAGACCgaagaa                  <  1:18654024/35‑1 (MQ=255)
                   aTCGGTGGAATGGCTGCGTAAGCAGACCgaagaag                 <  1:1664338/35‑1 (MQ=255)
                    tCGGTGGAATGGCTGCGTAAGCAGACCgaagaaga                <  1:5457525/35‑1 (MQ=255)
                    tCGGTGGAATGGCTGCGTAAGCAGACCgaagaaga                <  1:8842609/35‑1 (MQ=255)
                     cGGTGGAATGGCTGCGTAAGCAGACCgaagaagag               <  1:7052754/35‑2 (MQ=255)
                     cGGTGGAATGGCTGCGTAAGCAGACCgaagaagaa               <  1:13515109/35‑1 (MQ=255)
                      ggTGGAATGGCTGCGTAAGCAGACCGaagaagaag              <  1:17281400/35‑1 (MQ=255)
                       gTGGAATGGCTGCGTAAGCAGACCGAAGAAGAAGt             <  1:1855907/35‑1 (MQ=255)
                       gTGGAATGGCTGCGTAAGCAGACCGAAGAAGAAGt             <  1:6999400/35‑1 (MQ=255)
                       gTGGAATGGCTGCGTAAGCAGACCGAAGAAGAAGt             <  1:9178892/35‑1 (MQ=255)
                       gTGGAATGGCTGCGTAAGCAGACCGAAGAAGAAGt             <  1:5137983/35‑1 (MQ=255)
                        tGGAATGGCTGCGTAAGCAGACCGAAGAAGAAGTa            <  1:4832072/35‑1 (MQ=255)
                        tGGAATGGCTGCGTAAGCAGACCGAAGAAGAAGTa            <  1:4994718/35‑1 (MQ=255)
                           aaTGGCTGCGTAAGCAGACCGAAGAAGAAGTACTg         <  1:13419258/35‑1 (MQ=255)
                            aTGGCTGCGTAAGCAGACCGAAGAAGAAGTACTGa        <  1:13704370/35‑1 (MQ=255)
                            aTGGCTGCGTAAGCAGACCGAAGAAGAAGTACTGa        <  1:12359682/35‑1 (MQ=255)
                            aTGGCTGCGTAAGCAGACCGAAGAAGAAGTACTGa        <  1:2343032/35‑1 (MQ=255)
                            aTGGCTGCGTAAGCAGACCGAAGAAGAAGTACTGa        <  1:2662553/35‑1 (MQ=255)
                             tGGCTGCGTAAGCAGACCGAAGAAGAAGTACTGaa       <  1:12136068/35‑1 (MQ=255)
                             tGGCTGCGTAAGCAGACCGAAGAAGAAGTACTGaa       <  1:3991109/35‑1 (MQ=255)
                             tGGCTGCGTAAGCAGACCGAAGAAGAAGTACTGaa       <  1:12941664/35‑1 (MQ=255)
                              ggCTGCGTAAGCAGACCGAAGAAGAAGTACTGAAt      <  1:18175383/35‑1 (MQ=255)
                              ggCTGCGTAAGCAGAACGAAGAAGAAGTACTGAAt      <  1:18800344/35‑1 (MQ=255)
                               gCTGCGTAAGCAGACCGAAGAAGAAGTACTGAATc     >  1:17569315/1‑35 (MQ=255)
                               gCTGCGTAAGCAGACCGAAGAAGAAGTACTGAATc     <  1:15866681/35‑1 (MQ=255)
                                cTGCGTAAGCAGACAGAAGAAGAAGTACTGAATCa    <  1:20309001/35‑1 (MQ=255)
                                 tGCGTAAGCAGACCGAAGAAGAAGTACTGAATCAc   >  1:9939992/1‑35 (MQ=255)
                                 tGCGTAAGCAGACCGAAGAAGAAGTACTGAATCAc   >  1:6216790/1‑35 (MQ=255)
                                 tGCGTAAGCAGACCGAAGAAGAAGTACTGAATCAc   <  1:13954540/35‑1 (MQ=255)
                                 tGCGTAAGCAGACCGAAGAAGAAGTACTGAATCAc   >  1:10815805/1‑35 (MQ=255)
                                 tGCGTAAGCAGAACGAAGAAGAAGTACTGAATCAc   <  1:11461042/35‑1 (MQ=255)
                                  gggggaggagagcgccaacagagcggcaaatgcaa  <  1:6270524‑M1/35‑35 (MQ=255)
                                  gggggaggagagcgccaacagagcggcaaatgcaa  >  1:8245993‑M1/1‑1 (MQ=255)
                                  gggggaggagagcgccaacagagcggcaaatgcaa  <  1:8562182‑M1/35‑35 (MQ=255)
                                  gggggaggagagcgccaacagagcggcaaatgcaa  <  1:877285‑M1/35‑35 (MQ=255)
                                  gggggaggagagcgccaacagagcggcaaatgcaa  <  1:2937964‑M1/35‑35 (MQ=255)
                                  gggggaggagagcgccaacagagcggcaaatgcaa  >  1:2789503‑M1/1‑1 (MQ=255)
                                  gggggaggagagcgccaacagagcggcaaatgcaa  <  1:2456849‑M1/35‑35 (MQ=255)
                                  gggggaggagagcgccaacagagcggcaaatgcaa  >  1:17028697‑M1/1‑1 (MQ=255)
                                  gggggaggagagcgccaacagagcggcaaatgcaa  >  1:12928429‑M1/1‑1 (MQ=255)
                                  gCGTAAGCAGACCGAAGAAGAAGTACTGAATCAcc  <  1:4555047/35‑1 (MQ=255)
                                  gCGTAAGCAGACCGAAGAAGAAGTACTGAATCAcc  <  1:10137739/35‑1 (MQ=255)
                                  |                                  
AACAAGTGCGGCAACAACAATCGGTGGAATGGCTGCGTAAGCAGACCGAAGAAGAAGTACTGAATCACC  >  REL606/2949537‑2949605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.