New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 588495 = | NA (NA) | 5 (0.050) | 4/44 | NT | NA | noncoding (1/1977 nt) | IS150 | repeat region |
? | REL606 | 589936 = | NA (NA) | noncoding (387/768 nt) | IS1 | repeat region |
Only 100 of 186 total aligned reads displayed.
AGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACGATGAAA > REL606/588461‑588525 | aGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGtt < 1:6726453/35‑1 (MQ=255) aGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGtt > 1:7487943/1‑35 (MQ=255) aGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGtt > 1:3339356/1‑35 (MQ=255) aGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGtt < 1:15978984/35‑1 (MQ=255) gTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTg < 1:16438815/35‑1 (MQ=255) gTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTg > 1:16187980/1‑35 (MQ=255) gTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTg > 1:16939387/1‑35 (MQ=255) tCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGt < 1:3512545/35‑1 (MQ=255) tCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGt > 1:11348242/1‑35 (MQ=255) tCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGt > 1:13729440/1‑35 (MQ=255) cATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTa > 1:14496640/1‑35 (MQ=255) cATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTa > 1:17161137/1‑35 (MQ=255) aTGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTAc < 1:7526158/35‑1 (MQ=255) aTGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTAc > 1:11141445/1‑35 (MQ=255) tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt < 1:5390028/35‑1 (MQ=255) tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt > 1:1214153/1‑35 (MQ=255) tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt > 1:1563948/1‑35 (MQ=255) tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt > 1:19271876/1‑35 (MQ=255) tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt > 1:7838448/1‑35 (MQ=255) tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt < 1:9176164/35‑1 (MQ=255) tGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt < 1:6584833/35‑1 (MQ=255) gCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTg < 1:19314600/35‑1 (MQ=255) gCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTg < 1:7795528/35‑1 (MQ=255) gCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTg < 1:3260895/35‑1 (MQ=255) gCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTg > 1:6231402/1‑35 (MQ=255) gCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTg < 1:16882384/35‑1 (MQ=255) cAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGc > 1:18703963/1‑35 (MQ=255) cAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGc > 1:1329721/1‑35 (MQ=255) cAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGc < 1:12108615/35‑1 (MQ=255) cAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGc > 1:11043877/1‑35 (MQ=255) cAGAAAAAAAAGGGTTCAGCTTCAAGTTGTACTGc > 1:5854042/1‑35 (MQ=255) aGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCa > 1:19640646/1‑35 (MQ=255) aGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCa > 1:3465904/1‑35 (MQ=255) gAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAc > 1:16346335/1‑35 (MQ=255) gAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAc > 1:409655/1‑35 (MQ=255) aaaaaaaCTGGTTCAGCTTCAAGTTGTACTGCAcc > 1:20316234/1‑35 (MQ=255) aaaaaaaCGGGTTCAGCTTCAAGTTGTACTGCAcc > 1:18832932/1‑35 (MQ=255) aaaaaaaCGGGTTCAGCTTCAAGTTGTACTGCAcc < 1:520770/35‑1 (MQ=255) aaaaaaaCGGGTTCAGCTTCAAGTTGTACTGCAcc > 1:10037486/1‑35 (MQ=255) aaaaaaaCGGGTTCAGCTTCAAGTTGTACTGCAcc < 1:9399147/35‑1 (MQ=255) aaaaaaaCGGGTTCAGCTTCAAG‑TGTACTGCAccc < 1:17745003/35‑1 (MQ=38) aaaaaaCGGGTTCAGCTTCAAGTTGTACTGCAccc < 1:4457563/35‑1 (MQ=255) aaaaaaCGGGTTCAGCTTCAAGTTGTACTGCAccc < 1:17998430/35‑1 (MQ=255) aaaaaCGGGTTCAGCTTCAAGTTGTACTGCACCCa < 1:10311225/35‑1 (MQ=255) aaaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAt < 1:3614531/35‑1 (MQ=255) aaaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAt > 1:2690068/1‑35 (MQ=255) aaaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAt < 1:11475675/35‑1 (MQ=255) aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtt < 1:12312738/35‑1 (MQ=255) aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtt > 1:2537754/1‑35 (MQ=255) aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtt < 1:9489222/35‑1 (MQ=255) aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtt > 1:18336504/1‑35 (MQ=255) aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtt < 1:15640216/35‑1 (MQ=255) aaaCGGGTTCACCTTCAAGTTGTACTGCACCCAtt < 1:2545053/35‑1 (MQ=255) aaaCGGGTTAAGCTTCAAGTTGTACTGCACCCAtt < 1:13931438/35‑1 (MQ=255) aaCGGGTTCAGCTTCAAGTTGTACTGCACCCAttt < 1:3105402/35‑1 (MQ=255) aaCGGGTTCAGCTTCAAGTTGTACTGCACCCAttt > 1:9663914/1‑35 (MQ=255) aaCGGGTTCAGCTTCAAGTTGTACTGCACCCAttt > 1:10482439/1‑35 (MQ=255) aaCGGGTTCAGCTTCAAGTTGTACTGCACCCAttt < 1:1249879/35‑1 (MQ=255) aaCGGGTTCAGCTTCAAGTTGTACTGCACACAttt < 1:13002723/35‑1 (MQ=255) aCGGGTTCAGCTTCAAGTTTTACTGCACCCAtttt > 1:9196613/1‑35 (MQ=255) aCGGGTTCAGCTTCAAGTTGTACTGCACCCAtttt > 1:5570696/1‑35 (MQ=255) aCGGGTTCAGCTTCAAGTTGTACTGCACCCAtttt < 1:1901921/35‑1 (MQ=255) aCGGGTTCAGCTTCAAGTTGTACTGCACCCAtttt > 1:13646866/1‑35 (MQ=255) aCGGGTTCAGCTTCAAGTTGTACTGCACCCAtttt < 1:3997021/35‑1 (MQ=255) cGGGTTCAGCTTCAAGTTGTACTGCACCCATTttg < 1:13357574/35‑1 (MQ=255) cGGGTTCAGCTTCAAGTTGTACTGCACCCATTttg < 1:17352429/35‑1 (MQ=255) cGGGTTCAGCTTCAAGTTGTACTGCACCCATTttg < 1:832786/35‑1 (MQ=255) gggTTCAGCTTCAAGTTGTACTGCACCCATTttgt < 1:6111545/35‑1 (MQ=255) gggTTCAGCTTCAAGTTGTACTGCACCCATTttgt > 1:8658805/1‑35 (MQ=255) gTTCAGCTTCAAGTTGTACTGCACCCATTttgttg < 1:9898504/35‑1 (MQ=255) gTTCAGCTTCAAGTTGTACTGCACCCATTttgttg < 1:20373104/35‑1 (MQ=255) gTTCAGCTTCAAGTTGTACTGCACCCATTttgttg > 1:16643765/1‑35 (MQ=255) gTTCAGCTTCAAGTTGTACTGCACCCATTttgttg > 1:15938261/1‑35 (MQ=255) ttCAGCTTCAAGTTGTACTGCACCCATTTTGTTgg > 1:5552092/1‑35 (MQ=255) ttCAGCTTCAAGTTGTACTGCACCCATTTTGTTgg > 1:7051319/1‑35 (MQ=255) tCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGa < 1:7715025/35‑1 (MQ=255) cAGCTTCAAGTTGTACTGCACCCATTTTGTTGGAc > 1:2318917/1‑35 (MQ=255) cAGCTTCAAGTTGTACTGCACCCATTTTGTTGGAc > 1:18440992/1‑35 (MQ=255) cAGCTTCAAGTTGTACTGCACCCATTTTGTTGGAc < 1:14186576/35‑1 (MQ=255) aGCTTCAAGTTGTACTGCACCCATTTTGTTGGAct > 1:11724127/1‑34 (MQ=255) aGCTTCAAGTTGTACTGCACCCATTTTGTTGGACg < 1:14069873/35‑1 (MQ=255) aGCTTCAAGTTGTACTGCACCAATTTTGTTGGACg < 1:8525836/35‑1 (MQ=255) gCTTCAAGTTGTACTGCACCCATTTTGTTGGACGa > 1:15413617/1‑35 (MQ=255) gCTTCAAGTTGTACTGCACCCATTTTGTTGGACGa < 1:19864750/35‑1 (MQ=255) gCTTCAAGTTGTACTGCACCCATTTTGTTGGACGa < 1:16410306/35‑1 (MQ=255) gCTTCAAGTTGTACTGCACCCATTTTGTTGGACGa > 1:18231471/1‑35 (MQ=255) cTTCAAGTTGTACTGCACCCATTTTGTTGGACGAt < 1:13509808/35‑1 (MQ=255) cTTCAAGTTGTACTGCACCCATTTTGTTGGACGAt > 1:7923550/1‑35 (MQ=255) cTTCAAGTTGTACTGCACCCATTTTGTTGGACGAt < 1:7690399/35‑1 (MQ=255) ttCAAGTTGTACTGCACCCATTTTGTTGGACGATg < 1:12724526/35‑1 (MQ=255) tCAAGTTGTACTGCACCCATTTTGTTGGACGATGa < 1:8220200/35‑1 (MQ=255) tCAAGTTGTACTGCACCCATTTTGTTGGACGATGa < 1:17682459/35‑1 (MQ=255) tCAAGTTGTACTGCACCCATTTTGTTGGACGATGa < 1:907369/35‑1 (MQ=255) tCAAGTTGTACTGCACCCATTTTGTTGGACGATGa < 1:6897402/35‑1 (MQ=255) cAAGTTGTACTGCACCCATTTTGTTTGACGATGaa > 1:8751540/1‑35 (MQ=255) cAAGTTGTACTGCACCCATTTTGTTGGACGATGaa < 1:14693074/35‑1 (MQ=40) cAAGTTGTACTGCACCCATTTTGTTGGACGATGaa > 1:13971137/1‑35 (MQ=40) cAAGTTGTACTGCACCCATTTTGTTGGACGATGaa > 1:13011335/1‑35 (MQ=40) cAAGTTGTACTGCACCCATTTTGTTGGACGATGaa > 1:10026061/1‑35 (MQ=40) aaGTTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:6872559/1‑35 (MQ=38) | AGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACGATGAAA > REL606/588461‑588525 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |