New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 422591 = | 80 (0.780) | 12 (0.150) | 3/38 | NT | 17.9% | intergenic (‑278/+184) | cyoA/ampG | cytochrome o ubiquinol oxidase subunit II/muropeptide transporter |
? | REL606 | = 2605528 | 47 (0.580) | coding (679/1254 nt) | glyA | serine hydroxymethyltransferase |
TCTTTATTTTCCCCCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/422610‑422591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccACTCACAAAACCCTGGCGGGTCCGCGCGGCGGCC < REL606/2605528‑2605495 cCTTTGTTTTCCCCCCCACCACTCACAAAACCCTG < 1:9927148/34‑1 tTTTTCCCCCCCACCACTCACAAAACCCTGGCGGG < 1:4320400/34‑1 TTTTCCCCCCCACCACTCACAAAACCCTGGCGGGT < 1:4249396/35‑1 TTTTCCCCCCCACCACTCACAAAACCCTGGCGGGT < 1:3172636/35‑1 TTTCCCCCCCCACCACTCACAAAACCCTGGCGGGT < 1:16972737/35‑1 ttcCCCCCCCACCACTCACAAAACCCTGGCGGGTC < 1:3020221/32‑1 tgTCCCCCCCACCACTCACAAAACCCTGGCGGGTC < 1:15868046/33‑1 tcTCCCCCCCACCACTCACAAAACCCTGGCGGGTC < 1:12340464/33‑1 TTTCCCCCCCACCACTCACAAAACCCTGGCGGGTC < 1:1297414/35‑1 TTTCCCCCCCACCACTCACAAAACCCTGGCGGGTC < 1:17608014/35‑1 TTTCCCCCCCACCACTCACAAAACCCTGGCGGGTC < 1:9442499/35‑1 gcCCCCCCCACCACTCACAAAACCCTGGCGGGTCC < 1:20118241/33‑1 TTCCCCCCCACCACTCACAAAACCCTGGCGGGTCC < 1:15820885/35‑1 TTCCCCCCCACCACTCACAAAACCCTGGCGGGTCC < 1:306456/35‑1 ctCCCCCCACCACTCACAAAACCCTGGCGGGTCCG < 1:299456/33‑1 CCCCCCCCCCACTCACAAAACCCTGGCGGGTCCGC < 1:4175635/35‑1 CCCCCCCACCACTCACAAAACCCTGGCGGGTCCGC < 1:8810253/35‑1 CCCCCCCACCACTCACAAAACCCTGGCGGGTCCGC < 1:1740012/35‑1 CCCCCCCACCACTCACAAAACCCTGGCGGGTCCGC < 1:6322682/35‑1 CCCCCCCACCACTCACAAAACCCTGGCGGGTCCGC < 1:12329414/35‑1 CCCCCCCACCACTCACAAAACCCTGGCGGGTCCGC < 1:15860569/35‑1 CCCCCCACCACTCACAAAACCCTGGCGGGTCCGCG < 1:20111477/35‑1 CCCCCCACCACTCACAAAACCCTGGCGGGTCCGCG < 1:17085246/35‑1 CCCCACCACTCACAAAACCCTGGCGGGTCCGCGCG < 1:2147401/35‑1 CCCCACCACTCACAAAACCCTGGCGGGTCCGCGCG < 1:878519/35‑1 CCCCACCACTCACAAAACCCTGGCGGGTCCGCGCG < 1:19062868/35‑1 CCCACCACTCACAAAACCCTGGCGGGTCCGCGCGG < 1:8273076/35‑1 CCACCACTCACAAAACCCTGGCGGGTCCGCGCGGC < 1:974071/35‑1 CCACCACTCACAAAACCCTGGCGGGTCCGCGCGGC < 1:5513818/35‑1 CCACCACTCACAAAACCCTGGCGGGTCCGCGCGGC > 1:3320404/1‑35 CCACCACTCACAAAACCCTGGCGGGTCCGCGCGGC < 1:18109141/35‑1 CACCACTCACAAAACCCTGGCGGGTCCGCGCGGCG > 1:3423178/1‑35 CACCACTCACAAAACCCTGGCGGGTCCGCGCGGCG > 1:9446786/1‑35 CACCACTCACAAAACCCTGGCGGGTCCGCGCGGCG < 1:17214636/35‑1 CACCACTCACAAAACCCTGGCGGGGCCGCGCGGCG > 1:3818203/1‑35 CACAACTCACAAAACCCTGGCGGGTCCGCGCGGCG < 1:19826000/35‑1 ACCACTCACAAAACCCTGGCGGGTCCGCGCGGCGG < 1:11082247/35‑1 ACCACTCACAAAACCCTGGCGGGTCCGCGCGGCGG < 1:4876347/35‑1 ACCACTCACAAAACCCTGGCGGGTCCGCGCGGCGG < 1:3373737/35‑1 CCACTCACAAAACCCTGGCGGGTCCGCGCGGCGGC < 1:697361/35‑1 CCACTCACAAAACCCTGGCGGGTCCGCGCGGCGGC < 1:10259806/35‑1 CACTCACAAAACCCTGGCGGGTCCGCGCTGCGGCC > 1:7487442/1‑35 CACTCACAAAACCCTGGCGGGTCCGCGCGGAGGCC < 1:2657364/35‑1 TCTTTATTTTCCCCCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/422610‑422591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccACTCACAAAACCCTGGCGGGTCCGCGCGGCGGCC < REL606/2605528‑2605495 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |