New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1112140 =NA (NA)14 (0.140) 5/48 NT 35.9% noncoding (81/88 nt) serX tRNA‑Ser
?REL606 = 3173882 25 (0.240)coding (905/1245 nt) ygjU sodium:serine/threonine symporter

TCCCCCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1112149‑1112140
‑‑‑‑‑‑‑‑‑‑CCCGCCATATTGATGGTGGCACCCAGCGGAATAG  <  REL606/3173882‑3173849
                                            
gCCCCCCCCCCCCGCCATATTGATGGTGGCACCCA           <  1:14642204/34‑1
cCCCCCCCCCCCCGCCATATTGATGGTGGCACCCA           <  1:7594178/34‑1
cCCCCCCCCCCCCGCCATATTGATGGTGGCACCCA           <  1:19401678/34‑1
TCCCCCCCCCCCCGCCATATTGATGGTGGCACCCA           <  1:9070020/35‑1
 CCCCCCCCCCCCGCCATATTGATGGTGGCACCCAG          <  1:14161945/35‑1
 CCCCCCCCCCCCGCCATATTGATGGTGGCACCCAG          <  1:15797588/35‑1
 CCCCCCCCCCCCGCCATATTGATGGTGGCACCCAG          <  1:3214526/35‑1
  CCCCCCCCCCCGCCATATTGATGGTGGCACCCAGC         <  1:8732747/35‑1
   CCCCCCCCCCGCCATATTGATGGTGGCACCCAGCG        <  1:666461/35‑1
    CCCCCCCCCGCCATATTGATGGTGGCACCCAGCGG       <  1:8015691/35‑1
    CCCCCCCCCGCCATATTGATGGTGGCACCCAGCGG       <  1:17920451/35‑1
    CCCCCCCCCGCCATATTGATGGTGGCACCCAGCGG       <  1:16569456/35‑1
    CCCCCCCCCGCCATATTGATGGTGGCACCCAGCGG       <  1:14454741/35‑1
    CCCCCCCCCGCCATATTGATGGTGGCACCCAGCGG       <  1:13513223/35‑1
     CCCCCCCCGCCATATTGATGGTGGCACCCAGCGGA      <  1:19472337/35‑1
     CCCCCCCCGCCATATTGATGGTGGCACCCAGCGGA      <  1:7592129/35‑1
      cccCCCCGCCATATTGATGGTGGCACCCAGCGGAA     <  1:16021206/32‑1
       ccCCCCGCCATATTGATGGTGGCACCCAGCGGAAT    <  1:17714398/33‑1
       ccCCCCGCCATATTGATGGTGGCACCCAGCGGAAT    <  1:19072227/33‑1
       ccCCCCGCCATATTGATGGTGGCACCCAGCGGAAT    <  1:16014695/33‑1
        cCCCCGCCATATTGATGGTGGCACCCAGCGGAATA   <  1:17095838/34‑1
         CCCCGCCATATTGATGGTGGCACCCAGCGGAATAG  <  1:12603607/35‑1
                                            
TCCCCCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1112149‑1112140
‑‑‑‑‑‑‑‑‑‑CCCGCCATATTGATGGTGGCACCCAGCGGAATAG  <  REL606/3173882‑3173849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.