New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 107214974 (0.720)4 (0.040) 3/42 NT 4.8% coding (320/2745 nt) torS hybrid sensory histidine kinase in two‑component regulatory system with TorR
?REL606 3712714 = 106 (1.030)coding (451/684 nt) ECB_03459 conserved hypothetical protein

CGGGAGATCTCCTGCTCCTGTTGTTCAATAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1072116‑1072149
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGAAAAACCT  >  REL606/3712714‑3712725
                                  |||            
CGGGAGATCTCCTGCTCCTGTTGTTCAATAGCGGG                >  1:9933658/1‑35
CGGGAGATCTCCTGCTCCTGTTGTTCAATAGCGGG                >  1:12991233/1‑35
 GGGAGATCTCCTGCTCCTGTTGTTCAATAGCGGGG               >  1:9198640/1‑35
 GGGAGATCTCCTGCTCCTGTTGTTCAATAGCGGGG               >  1:2197527/1‑35
 GGGAGATCTCCTGCTCCTGTTGTTCAATAGCGGGG               >  1:17598033/1‑35
  GGAGATCTCCTGCTCCTGTTGTTCAATAGCGGGGG              >  1:8162066/1‑35
   GAGATCTCCTGCTCCTGTTGTTCAATAGCTGGGGt             >  1:4028011/1‑34
   GAGATCTCCTGCTCCTGTTGTTCAATAGCGGGGGG             >  1:15178854/1‑35
    AGATCTCCTGCTCCTGTTGTTCAATAGCGGGGGGG            >  1:18625880/1‑35
    AGATCTCCTGCTCCTGTTGTTCAATAGCGGGGGGG            >  1:17059404/1‑35
    AGATCTCCTGCTCCTGTTGTTCAATAGCGGGGGGG            >  1:16736409/1‑35
     GATCTCCTGCTCCTGTTGTTCAATAGCGGTGGGGT           >  1:1102640/1‑35
     GATCTCCTGCTCCTGTTGTTCAATAGCGGGGGGGT           >  1:3747025/1‑35
      ATCTCCTGCTCCTGTTGTTCAATAGCGGGGGGGgt          >  1:10350192/1‑33
      ATCTCCTGCTCCTGTTGTTCAATAGCGGGGGGGTt          >  1:17586656/1‑34
           CTGCTCCTGTTGTTCAATAGCGGGGGGGTTAAAAA     >  1:20180195/1‑35
             GCTCCTGTTGTTCAATAGCGGGGGGGTGAAAAACC   >  1:899909/1‑35
             GCTCCTGTTGTTCAATAGCGGGGGGGGGAAAAACC   >  1:16091670/1‑35
              CTCCTGTTGTTCAATAGCGGGGGGGTGAAAAACCT  >  1:6755369/1‑35
                                  |||            
CGGGAGATCTCCTGCTCCTGTTGTTCAATAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1072116‑1072149
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGAAAAACCT  >  REL606/3712714‑3712725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.