New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2283386 =61 (0.590)10 (0.110) 3/44 NT 11.2% intergenic (‑42/+107) yfaA/gyrA hypothetical protein/DNA gyrase subunit A
?REL606 2645822 = 102 (1.080)coding (151/273 nt) yfiM hypothetical protein

Only 100 of 155 total aligned reads displayed.

TGCCATGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCGA  >  REL606/2645788‑2645856
                                  |                                  
tGCCATGTTTGGATTGATGTTCTCTGTCAGTTTgg                                    <  1:3796939/35‑1 (MQ=255)
tGCCATGTTTGGATTGATGTTCTCTGTCAGTTTgg                                    >  1:1235772/1‑35 (MQ=255)
 tttgtcgtattagggcacggtaaagtttggctggg                                   >  1:14269404‑M2/34‑35 (MQ=255)
 tttgtcgtattagggcacggtaaagtttggctggg                                   >  1:12732516‑M2/34‑35 (MQ=255)
 gCCATGTTTGGATTGATGTTCTCTGTCAGTTTggg                                   <  1:13907063/35‑1 (MQ=255)
  ttgtcgtattagggcacggtaaagtttggctgggg                                  >  1:16613256‑M2/33‑35 (MQ=255)
  ccATGTTTGGATTGATGTTCTCTGTCAGTTTgggg                                  <  1:5315527/35‑1 (MQ=255)
  ccATGTTTGGATTGATGTTCTCTGTCAGTTTgggg                                  <  1:7622020/35‑1 (MQ=255)
   cATGTTTGGATTGATGTTCTCTGTCAGTTTggggg                                 >  1:11081999/1‑35 (MQ=255)
    gtcgtattagggcacggtaaagtttggctggggcg                                >  1:8655983‑M2/31‑33 (MQ=255)
    aTGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGc                                >  1:17665633/1‑35 (MQ=255)
     tcgtattagggcacggtaaagtttggctggggccc                               >  1:1656956‑M2/30‑32 (MQ=255)
     tcgtattagggcacggtaaagtttggctgGGGGCg                               >  1:17086886‑M2/30‑35 (MQ=255)
     tcgtattagggcacggtaaagtttggctgGGGCCg                               >  1:10468763‑M2/30‑35 (MQ=255)
     tGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCg                               <  1:6408291/35‑1 (MQ=255)
     tGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCg                               >  1:12050609/1‑35 (MQ=255)
      gTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCGt                              <  1:15864203/35‑1 (MQ=255)
      cgtattagggcacggtaaagtttggctgGGGGcgg                              >  1:18772611‑M2/29‑34 (MQ=255)
      cgtattagggcacggtaaagtttggctgGGGCcgg                              >  1:5725753‑M2/29‑34 (MQ=255)
      cgtattagggcacggtaaagtttggctgGGGCcgg                              >  1:17787904‑M2/29‑34 (MQ=255)
       tttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTc                             >  1:153474/1‑35 (MQ=255)
       tttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTc                             >  1:17948090/1‑35 (MQ=255)
       tttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTc                             >  1:6939315/1‑35 (MQ=255)
       gtattagggcacggtaaagtttggctgGGGgcggg                             >  1:8839604‑M2/28‑33 (MQ=255)
        ttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCa                            >  1:7149439/1‑35 (MQ=255)
        ttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCa                            <  1:14696732/35‑1 (MQ=255)
        ttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCa                            >  1:18328688/1‑35 (MQ=255)
        ttGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCa                            >  1:18875286/1‑35 (MQ=255)
        tattagggcacggtaaagtttggctgGGggcggga                            >  1:14416748‑M2/27‑32 (MQ=255)
         tGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCaa                           >  1:6576599/1‑35 (MQ=255)
         tGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCaa                           <  1:18118160/35‑1 (MQ=255)
         tGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCaa                           >  1:10975629/1‑35 (MQ=255)
         tGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCaa                           <  1:3988179/35‑1 (MQ=255)
          ttagggcacggtaaagtttggctgGGGGCGTCaaa                          >  1:5977588‑M2/25‑35 (MQ=255)
          ggATTGATGTTCTCTGTCAGTTTGGGGGCGTCaaa                          <  1:13880775/35‑1 (MQ=255)
          ggATTGATGTTCTCTGTCAGTTTGGGGGCGTCaaa                          >  1:18395457/1‑35 (MQ=255)
           tagggcacggtaaagtttggctgGGGGCGTCaaaa                         >  1:5242168‑M2/24‑35 (MQ=255)
           gATTGATGTTCTCTGTCAGTTTGGGGGCGTCaaaa                         >  1:19005661/1‑35 (MQ=255)
           gATTGATGTTCTCTGTCAGTTTGGGGGCGTCaaaa                         >  1:10849962/1‑35 (MQ=255)
           gATTGATGTTCTCTGTCAGTTTGGGGGCGTCaaaa                         >  1:11559417/1‑35 (MQ=255)
           gATTGATGTTCTCTGTCAGTTTGGGGGCGTCaaaa                         <  1:15999305/35‑1 (MQ=255)
            aTTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAag                        <  1:145783/35‑1 (MQ=255)
            aTTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAag                        >  1:3420030/1‑35 (MQ=255)
            aTTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAag                        >  1:4360215/1‑35 (MQ=255)
            aTTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAag                        >  1:3579295/1‑35 (MQ=255)
             ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga                       >  1:11073591/1‑35 (MQ=255)
             ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga                       <  1:6197080/35‑1 (MQ=255)
             ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga                       <  1:1190528/35‑1 (MQ=255)
             ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga                       <  1:12421220/35‑1 (MQ=255)
             ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga                       >  1:18167020/1‑35 (MQ=255)
             ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga                       <  1:18141081/35‑1 (MQ=255)
             ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga                       >  1:13753278/1‑35 (MQ=255)
             ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga                       <  1:13760915/35‑1 (MQ=255)
             ttGATGTTCTCTGTCAGTTTGGGGGCGTCAAAaga                       <  1:7673625/35‑1 (MQ=255)
              tGATGTTCTCTGTCAGTTTGGGGGCGTCAAAagag                      <  1:13336835/35‑1 (MQ=255)
              tGATGTTCTCTGTCAGTTTGGGGGCGTCAAAagag                      <  1:15399003/35‑1 (MQ=255)
              tGATGTTCTCTGTCAGTTTGGGGGCGTCAAAagag                      >  1:5504623/1‑35 (MQ=255)
              tGATGTTCTCTGTCAGTTTGGGGGCGTCAAAagag                      >  1:2863510/1‑35 (MQ=255)
               gATGTTCTCTGTCAGTTTGGGGGCGTCAAAagatc                     >  1:9222126/1‑33 (MQ=255)
               gATGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGc                     >  1:10232722/1‑35 (MQ=255)
                aTGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCt                    >  1:3235300/1‑35 (MQ=255)
                 tGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCtt                   <  1:4053386/35‑1 (MQ=255)
                 tGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCtt                   <  1:19450512/35‑1 (MQ=255)
                  gTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCttt                  <  1:8557274/35‑1 (MQ=255)
                   ttCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTg                 <  1:12811984/35‑1 (MQ=255)
                   ttCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTg                 <  1:3717262/35‑1 (MQ=255)
                   ttCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTg                 <  1:12912262/35‑1 (MQ=255)
                    tctcTGTCAGTTTGGGGGCGTCAAAAGAGCTTTgg                >  1:1136389/1‑35 (MQ=255)
                    tctcTGTCAGTTTGGGGGCGTCAAAAGAGCTTTgg                <  1:7070210/35‑1 (MQ=255)
                    tctcTGTCAGTTTGGGGGCGTCAAAAGAGCTTTgg                <  1:17343761/35‑1 (MQ=255)
                     ctctGTCAGTTTGGGGGCGTCAAAAGAGCTTTggg               <  1:1910302/35‑1 (MQ=255)
                      tctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGa              <  1:8427015/35‑1 (MQ=255)
                      tctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGa              <  1:9527282/35‑1 (MQ=255)
                      tctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGa              <  1:3391213/35‑1 (MQ=255)
                       ctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGAt             >  1:1999307/1‑35 (MQ=255)
                       ctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGAt             <  1:7914475/35‑1 (MQ=255)
                       ctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGAt             >  1:13808499/1‑35 (MQ=255)
                       ctGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGAt             <  1:7032900/35‑1 (MQ=255)
                        tGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATa            <  1:9268875/35‑1 (MQ=255)
                        tGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATa            <  1:10697428/35‑1 (MQ=255)
                        tGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATa            >  1:10982946/1‑35 (MQ=255)
                         gTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAg           >  1:4753060/1‑35 (MQ=255)
                         gTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAg           <  1:2904592/35‑1 (MQ=255)
                          tCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgc          >  1:10005486/1‑35 (MQ=255)
                          tCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgc          >  1:1117690/1‑35 (MQ=255)
                          tCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgc          <  1:17814018/35‑1 (MQ=255)
                          tCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgc          <  1:5433403/35‑1 (MQ=255)
                          tCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgc          <  1:4923668/35‑1 (MQ=255)
                           cAGTTTGGGGGCGTCAAAAGAGCTTTGTGATAgcc         <  1:1482341/35‑1 (MQ=255)
                           cAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgcc         <  1:2048522/35‑1 (MQ=255)
                            aGTTTGGGGGCGTCAAAAGAGCTTTGGGATAgccg        >  1:9137763/1‑35 (MQ=255)
                             gTTTGGGGGCGTCGAAAGAGCTTTGGGATAgccgc       >  1:9324205/1‑35 (MQ=255)
                              tttGGGGGCGTCAAAAGAGCTTTGGGATAgccgcc      >  1:2361998/1‑35 (MQ=255)
                               ttGGGGGCGTCAAAAGAGCTTTGGGATAGCCGccc     <  1:17852803/35‑1 (MQ=255)
                               ttGGGGGCGTCAAAAGAGCTTTGGGATAGCCGccc     >  1:14794696/1‑35 (MQ=255)
                               ttGGGGGCGTCAAAAGAGCTTTGGGATAGCCGccc     >  1:6671481/1‑35 (MQ=255)
                               ttGGGGGCGTCAAAAGAGCTTTGGGATAGCCGccc     <  1:18064083/35‑1 (MQ=255)
                               ttGGGGGCGTCAAAAGAGCTTTGGGATAGCCGccc     >  1:130092/1‑35 (MQ=255)
                                tgGGGGCGTCAAAAGAGCTTTGGGATAGCCGcccc    >  1:10501013‑M2/3‑35 (MQ=255)
                                 gGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCg   >  1:6395116‑M2/2‑35 (MQ=255)
                                  |                                  
TGCCATGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCGA  >  REL606/2645788‑2645856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.