New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2682742 =NA (NA)39 (0.540) 6/34 NT 45.9% noncoding (135/768 nt) IS1 repeat region
?REL606 2703961 = 65 (0.630)coding (794/1185 nt) ygaX predicted transporter

GGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCC  >  REL606/2682708‑2682768
                                  |                          
ggggTGGTGCGTAACGGCAAAAGCACTGCCGGACa                            >  1:9906509/1‑35 (MQ=38)
ggggTGGTGCGTAACGGCAAAAGCACTGCCGGACa                            >  1:8904889/1‑35 (MQ=38)
ggggTGGTGCGTAACGGCAAAAGCACTGCCGGACa                            >  1:7027549/1‑35 (MQ=38)
ggggTGGTGCGTAACGGCAAAAGCACTGCCGGACa                            >  1:20418957/1‑35 (MQ=38)
ggggTGGTGCGTAACGGCAAAAGCACTGCCGGACa                            >  1:19145078/1‑35 (MQ=38)
ggggTGGTGCGTAACGGCAAAAGCACTGCCGGACa                            >  1:15253820/1‑35 (MQ=38)
 gggTGGTGCGTAACTGCAAAAGCACTGCCGGACAt                           >  1:14773584/1‑35 (MQ=255)
 gggTGGTGCGTAACGGCAAAAGCACTGCCGGACAt                           <  1:12265129/35‑1 (MQ=35)
 gggTGGTGCGTAACGGCAAAAGCACTGCCGGACAt                           >  1:7523416/1‑35 (MQ=35)
  ggtggtGCGTAACGGCAAAAGCACTGCCGGACATc                          >  1:1517198/1‑35 (MQ=32)
  ggtggtGCGTAACGGCAAAAGCACTGCCGGACATc                          <  1:16922110/35‑1 (MQ=32)
  ggtggtGCGTAACGGCAAAAGCACTGCCGGACATc                          >  1:172464/1‑35 (MQ=32)
  ggtggtGCGTAACGGCAAAAGCACTGCCGGACATc                          <  1:14359252/35‑1 (MQ=32)
  ggtggtGCGTAACGGCAAAAGCACTGCCGGACATc                          >  1:15406614/1‑35 (MQ=32)
                      gCACTGCCGGACATCAGCGCTATCTCTGCTCTCAc      <  1:9543172/35‑1 (MQ=32)
                      gCACTGCCGGACATCAGCGCTATCTCTGCTCTCAc      <  1:17871306/35‑1 (MQ=32)
                       cACTGCCGGACATCAGCGCTATCTCTGCTCTCACt     <  1:15317824/35‑1 (MQ=35)
                       cACTGCCGGACATCAGCGCTATCTCTGCTCTCACt     >  1:377366/1‑35 (MQ=35)
                       cACTGCCGGACATCAGCGCTATCTCTGCTCTCACt     >  1:15753496/1‑35 (MQ=35)
                       cACTGCCGCACATCAGCGCTATCTCTGCTCTCACt     >  1:389733/1‑35 (MQ=255)
                        tcTGCCGGACATCAGCGCTATCTCTGCTCTCACTg    <  1:2787763/34‑1 (MQ=25)
                        aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg    <  1:1940680/35‑1 (MQ=38)
                        aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg    <  1:19501891/35‑1 (MQ=38)
                        aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg    <  1:15147773/35‑1 (MQ=38)
                        aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg    <  1:18028189/35‑1 (MQ=38)
                        aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg    >  1:4731143/1‑35 (MQ=38)
                        aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg    >  1:4783509/1‑35 (MQ=38)
                        aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg    <  1:5827405/35‑1 (MQ=38)
                        aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg    <  1:16553237/35‑1 (MQ=38)
                        aCTGCCGGACATCAGCGCTATCTCTGCTCTCACTg    <  1:13359130/35‑1 (MQ=38)
                         cTGCCGGACATCAGCGCTATCTCTGCTCTCACTGc   <  1:15609663/35‑1 (MQ=35)
                         cTGCCGGACATCAGCGCTATCTCTGCTCTCACTGc   <  1:8319916/35‑1 (MQ=35)
                          tGCCGGACATCAGCGCTATCTCTGCTCTCCCTGcc  <  1:7724002/35‑1 (MQ=12)
                          tGCCGGACATCAGCGCTATCTCTGCTCTCACTGcc  >  1:17841925/1‑35 (MQ=32)
                          tGCCGGACATCAGCGCTATCTCTGCTCTCACTGcc  <  1:4825440/35‑1 (MQ=32)
                                  |                          
GGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCC  >  REL606/2682708‑2682768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.