New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2949571 | 69 (0.670) | 15 (0.150) | 5/46 | NT | 14.6% | coding (834/996 nt) | argK | arginine/ornithine transport system ATPase |
? | REL606 | = 3728925 | 109 (1.110) | coding (59/960 nt) | yibQ | predicted polysaccharide deacetylase |
AACAAGTGCGGCAACAACAATCGGTGGAATGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2949537‑2949571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA < REL606/3728925‑3728892 AACAAGTGCGGCAACAACAATCGGTGGAATGGCTG < 1:12968863/35‑1 AACAAGTGCGGCAACAACAATCGGTGGAATGGCTG > 1:17045207/1‑35 AACAAGTGCGGCAACAACAATCGGTGGAATGGCTG < 1:20335243/35‑1 ACAAGTGCGGCAACAACAATCGGTGGAATGGCTGG > 1:16009788/1‑35 CAAGTGCGGCAACAACAATCGGTGGAATGGCTGGG > 1:9067321/1‑35 CAAGTGCGGCAACAACAATCGGTGGAATGGCTGGG > 1:8732283/1‑35 CAAGTGCGGCAACAACAATCGGTGGAATGGCTGGG > 1:11616438/1‑35 CAAGTGCGGCAACAACAATCGGTGGAATGGCTGGG > 1:2656228/1‑35 CAAGTGCGGCAACAACAATCGGTGGAATGGCTGGG > 1:1875680/1‑35 AAGTGCGGCAACAACAATCGGTGGAATGGCTGGGG > 1:9949335/1‑35 AAGTGCGGCAACAACAATCGGTGGAATGGCTGGGG > 1:6425052/1‑35 AAGTGCGGCAACAACAATCGGTGGAATGGCTGGGG > 1:5077427/1‑35 AAGTGCGGCAACAACAATCGGTGGAATGGCTGGGG > 1:2797020/1‑35 AAGTGCGGCAACAACAATCGGTGGAATGGCTGGGG > 1:176164/1‑35 AAGTGCGGCAACAACAATCGGCGGAATGGCTGGGG > 1:12613268/1‑35 AGTGCGGCAACAACAATCGGTGGAATGGCTGGGGG > 1:10196490/1‑35 GTGCGGCAACAACAATCGGTGGAATGGCTGGGGGA > 1:9888343/1‑35 TGCGGCAACAACAATCGGTGGAATGGCTGGGGGgg > 1:9818209/1‑33 TGCGGCAACAACAATCGGTGGAATGGCTGGGGGAG > 1:18227692/1‑35 TGCGGCAACAACAATCGGTGGAATGGCTGGGGGAG > 1:5490969/1‑35 GCGGCAACAACAATCGGTGGAATGGCTGGGGGAGc > 1:16690098/1‑34 CGGCAACAACAATCGGTGGAATGGCTGGGGGGGGA > 1:19506754/1‑35 GGCAACAACAATCGGTGGAATGGCTGGGGGGGGAG > 1:6426033/1‑35 GGCAACAACAATCGGTGGAATGGCTGGGGGAGGcg > 1:11535959/1‑33 GGCAACAACAATCGGTGGAATGGCTGGGGGAGGAG > 1:17997799/1‑35 CAACAACAATCGGTGGAATGGCTGGGGGAGGAGAa > 1:17955610/1‑34 AACAACAATCGGTGGAATGGCTGGGGGAGGAGAcc > 1:7145359/1‑33 AACAACAATCGGTGGAATGGCTGGGGGAGGAGAca > 1:2082029/1‑33 AACAACAATCGGTGGAATGGCTGGGGGAGGAGAGC > 1:9133808/1‑35 ACAATAATCGGTGGAATGGCTGGGGGAGGAGAGCG > 1:2056057/1‑35 ACAACAATCGGTGGAATGGCTGGGGGAGGAGAccc > 1:19103559/1‑32 ACAACAATCGGTGGAATGGCTGGGGGAGGAGAACG > 1:11428225/1‑35 CAACAATCGGTGGAATGGCTGGGGGAGGAGAACGg > 1:15547951/1‑34 ttgGGGGGAGGAGAGCGCCAACAGAGCGGCAAATG > 1:17484638/4‑35 GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA > 1:17028697/1‑35 GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA > 1:2789503/1‑35 GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA < 1:877285/35‑1 GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA < 1:8562182/35‑1 GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA > 1:8245993/1‑35 GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA < 1:2456849/35‑1 GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA > 1:12928429/1‑35 GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA < 1:6270524/35‑1 GGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA < 1:2937964/35‑1 GGGGGAGGAGAGCGCCAACAGAGCGCCAAATGCAA < 1:2852735/35‑1 AACAAGTGCGGCAACAACAATCGGTGGAATGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2949537‑2949571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGGAGGAGAGCGCCAACAGAGCGGCAAATGCAA < REL606/3728925‑3728892 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |