New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 67940175 (0.730)6 (0.070) 3/38 NT 13.9% intergenic (‑174/+207) metT/asnB tRNA‑Met/asparagine synthetase B
?REL606 4198479 = 15 (0.180)coding (341/1737 nt) aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein

Only 100 of 164 total aligned reads displayed.

GTCAATTATTGTTTACTTTGTGTTTTTTCCCCACCCTACAGCCATTCTTTTGTCGTACAGGATGAAATT  >  REL606/679367‑679435
                                  |                                  
gTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    <  1:740831‑M1/35‑1 (MQ=255)
gTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    <  1:4518497‑M1/35‑1 (MQ=255)
gTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    >  1:3376382‑M1/1‑35 (MQ=255)
gTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    <  1:2887047‑M1/35‑1 (MQ=255)
gTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    <  1:11666233‑M1/35‑1 (MQ=255)
gTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    <  1:1881850‑M1/35‑1 (MQ=255)
gTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    <  1:17507184‑M1/35‑1 (MQ=255)
gTCAATTATTGTTTACTTTGTGTTTTTTCCCCACC                                    >  1:14266545‑M1/1‑35 (MQ=255)
 tCAATTATTGTTTACTTTGTGTTTTTTCCCCAccc                                   >  1:3969207/1‑35 (MQ=255)
 tCAATTATTGTTTACTTTGTGTTTTTTCCCCAccc                                   <  1:20379977/35‑1 (MQ=255)
 tCAATTATTGTTTACTTTGTGTTTTTTCCCCAccc                                   >  1:19741798/1‑35 (MQ=255)
 tCAATTATTGTTTACTTTGTGTTTTTTCCCCAccc                                   <  1:15331866/35‑1 (MQ=255)
   aaTTATTGTTTACTTTGTGTTTTTTCCCCACCCTa                                 >  1:3682025/1‑35 (MQ=255)
   aaTTATTGTTTACTTTGTGTTTTTTCCCCACCCTa                                 <  1:17561487/35‑1 (MQ=255)
   aaTTATTGTTTACTTTGTGTTTTTTCCCCACCCTa                                 >  1:13330592/1‑35 (MQ=255)
   aaTTATTGTTTACTTTGTGTTTTTTCCCCACCCTa                                 >  1:10230371/1‑35 (MQ=255)
   aaTTATTGTTAACTTTGTGTTTTTTCCCCACCCTa                                 <  1:2352366/35‑1 (MQ=255)
    attattGTTTACTTTGTGTTTTTTCCCCACCCTAc                                <  1:6901236/35‑1 (MQ=255)
    attattGTTTACTTTGTGTTTTTTCCCCACCCTAc                                >  1:11381286/1‑35 (MQ=255)
     ttattGTTTGCTTTGTGTTTTTTCCCCACCCTACa                               <  1:83162/35‑1 (MQ=255)
     ttattGTTTACTTTGTGTTTTTTCCCCACCCTACa                               <  1:8768783/35‑1 (MQ=255)
     ttattGTTTACTTTGTGTTTTTTCCCCACCCTACa                               <  1:19813581/35‑1 (MQ=255)
      tattGTTTACTTTGTGTTTTTTCCCCACCCTACAg                              >  1:6329509/1‑35 (MQ=255)
      tattGTTTACTTTGTGTTTTTTCCCCACCCTACAg                              <  1:9527361/35‑1 (MQ=255)
      tattGTTTACTTTGTGTTTTTTCCCCACCCTACAg                              <  1:14940596/35‑1 (MQ=255)
      tattGTTTACTTTGTGTTTTTTCCCCACCCTACAg                              <  1:19311081/35‑1 (MQ=255)
       attGTTTACTTTGTGTTTTTTCCCCACCCTACAGc                             >  1:20371286/1‑35 (MQ=255)
       attGTTTACTTTGTGTTTTTTCCCCACCCTACAGc                             >  1:14148719/1‑35 (MQ=255)
       attGTTTACTTTGTGTTTTTTCCCCACACTACAGc                             <  1:6256197/35‑1 (MQ=255)
       attGTTTACTTTGTGTTTTTTCCCCACACTACAGc                             <  1:13833389/35‑1 (MQ=255)
        ttGTTTACTTTGTGTTTTTTCCCCACCCTACAGcc                            >  1:16129196/1‑35 (MQ=255)
        ttGTTTACTTTGTGTTTTTTCCCCACCCTACAGcc                            >  1:13905400/1‑35 (MQ=255)
         tGTTTACTTTGTGTTTTTTCCCCACCCTACAGCCa                           >  1:18536493/1‑35 (MQ=255)
          gTTTACTTTGTGTTTTTTCCCCACCCTACAGCCAt                          >  1:15296283/1‑35 (MQ=255)
          gTTTACTTTGTGTTTTTTCCCCACCCTACAGCCAt                          >  1:18904783/1‑35 (MQ=255)
          gTTTACTTTGTGTTTTTTCCCCACCCTACAGCCAt                          >  1:18788991/1‑35 (MQ=255)
           tttACTTTGTGTTTTTTCCCCACCCTACAGCCAtt                         >  1:2798734/1‑35 (MQ=255)
           tttACTTTGTGTTTTTTCCCCACCCTACAGCCAtt                         >  1:13685628/1‑35 (MQ=255)
               cTTTGTGTTTTTTCCCCACCCTACAGCCATTCttt                     >  1:17983375/1‑35 (MQ=255)
               cTTTGTGTTTTTTCCCCACCCTACAGCCATTCttt                     >  1:1635784/1‑35 (MQ=255)
                 ttGTGTTTTTTCCCCACCCTACAGCCATTCTTTTg                   >  1:12000319/1‑35 (MQ=255)
                  tgtgTTTTTTCCCCACCCTACAGCCATTCTTTTGt                  >  1:1797933/1‑35 (MQ=255)
                  tgtgTTTTTTCCCCACCCTACAGCCATTCTTTTGt                  >  1:17020753/1‑35 (MQ=255)
                   gtgtTTTTTCCCCACCCTACAGCCATTCTTTTGTc                 >  1:2910471/1‑35 (MQ=255)
                   gtgtTTTTTCCCCACCCTACAGCCATTCTTTTGTc                 >  1:19388866/1‑35 (MQ=255)
                   gtgtTTTTTCCCCACCCTACAGCCATTCTTTTGTc                 >  1:18499687/1‑35 (MQ=255)
                   gtgtTTTTTCCCCACCCTACAGCCATTCTTTTGTc                 >  1:18070015/1‑35 (MQ=255)
                    tttttttcCCCCCCCCCCCAGCCATTCTTTTGTCg                <  1:3857286/33‑1 (MQ=16)
                    tgtTTTTTCCCCACCgctcgcttactcccgagcgg                <  1:7807670‑M1/35‑21 (MQ=255)
                    tgtTTTTTCCCCACCCTACAGCCATTCTTTTGTCg                >  1:12601142/1‑35 (MQ=255)
                    tgtTTTTTCCCCACCCTACAGCCATTCTTTTGTCg                >  1:7957614/1‑35 (MQ=255)
                    gtttttttccCCACCgctcgcttactcccgagcgg                <  1:16845609‑M1/33‑21 (MQ=255)
                     gtTTTTTCCCCACCCTACAGCCATTCTTTTGTCGt               >  1:1607088/1‑35 (MQ=255)
                      ttttttCCCCACCgctcgcttactcccgagcggct              <  1:2158653‑M1/35‑23 (MQ=255)
                      ttttttCCCCACCCTACAGCCATTCTTTTGTCGTa              >  1:78970/1‑35 (MQ=255)
                      ttttttCCCCACCCTACAGCCATTCTTTTGTCGTa              >  1:3786174/1‑35 (MQ=255)
                      ttttttCCCCACCCTACAGCCATTCTTTTGTCGTa              >  1:20090102/1‑35 (MQ=255)
                      tttttcCCCCACCgctcgcttactcccgagcggct              <  1:12673570‑M1/35‑23 (MQ=255)
                        tttgCCCCACCgctcgcttactcccgagcggcttt            <  1:5190486‑M1/35‑25 (MQ=255)
                        atttcCCCACCgctcgcttactcccgagcggcttt            <  1:15143312‑M1/34‑25 (MQ=255)
                         tttCCCCACCCTACAGCCATTCTTTTGTCGTACAg           >  1:3472268/1‑35 (MQ=255)
                         tttCCCCACCCTACAGCCATTCTTTTGTCGTACAg           >  1:20430389/1‑35 (MQ=255)
                         tccccccCCCCCCCAGCCATTCTTTTGTCGTACAg           <  1:2848068/32‑1 (MQ=19)
                         cccccccCCCCCCCAGCCATTCTTTTGTCGTACAg           <  1:12448000/32‑1 (MQ=19)
                          ttgcccaccgctcgcttactcccgagcggcttttt          <  1:17702553‑M1/32‑27 (MQ=255)
                          ttCCCCACCCTACAGCCATTCTTTTGTCGTAAAgg          >  1:6947663/1‑35 (MQ=255)
                           tCCCCACCCTACAGCCATTCTTTTGTCGTACAGGa         >  1:20030508/1‑35 (MQ=255)
                           ccgccaccgctcgcttactcccgagcggcttttta         <  1:9636249‑M1/32‑28 (MQ=255)
                            ccccACCgctcgcttactcccgagcggctttttat        <  1:10364888‑M1/35‑29 (MQ=255)
                            ccccACCgctcgcttactcccgagcggctttttat        <  1:9023181‑M1/35‑29 (MQ=255)
                            ccccACCCTACAGCCATTCTTTTGTCGTACAGGAt        >  1:11784027/1‑35 (MQ=255)
                             cccACCCTACAGCCATTCTTTTGTCGTACAGGATg       >  1:11159185/1‑35 (MQ=255)
                             cccACCCTACAGCCATTCTTTTGTCGTACAGGATg       >  1:14674349/1‑35 (MQ=255)
                             cccACCCTACAGCCATTCTTTTGTCGTACAGGATg       >  1:4675729/1‑35 (MQ=255)
                              ccACCgctcgcttactcccgagcggctttttatct      <  1:20298390‑M1/35‑31 (MQ=255)
                              ccACCCTACAGCCATTCTTTTGTCGTACAGGATGa      >  1:10457588/1‑35 (MQ=255)
                              ccACCCTACAGCCATTCTTTTGTCGTACAGGATGa      >  1:14497349/1‑35 (MQ=255)
                              ccACCCTACAGCCATTCTTTTGTCGTACAGGATGa      >  1:5657783/1‑35 (MQ=255)
                               cACCgctcgcttactcccgagcggctttttatctt     <  1:10280083‑M1/35‑32 (MQ=255)
                               cACCCTACAGCCATTCTTTTGTCGTACAGGATGaa     >  1:1686880/1‑35 (MQ=255)
                               cACCCTACAGCCATTCTTTTGTCGTACAGGATGaa     >  1:18982989/1‑35 (MQ=255)
                               cACCCTACAGCCATTCTTTTGTCGTACAGGATGaa     >  1:8444867/1‑35 (MQ=255)
                                cccgctcgcttactcccgagcggctttttatcttt    <  1:1148128‑M1/34‑33 (MQ=255)
                                aCCgctcgcttactcccgagcggctttttatcttt    <  1:15247101‑M1/35‑33 (MQ=255)
                                aCCgctcgcttactcccgagcggctttttatcttt    <  1:17905042‑M1/35‑33 (MQ=255)
                                aCCgctcgcttactcccgagcggctttttatcttt    <  1:4841092‑M1/35‑33 (MQ=255)
                                aCCgctagcttactcccgagcggctttttatcttt    <  1:5207247‑M1/35‑33 (MQ=255)
                                aCCCTACAGCCATTCTTTTGTCGTACAGGATGaaa    >  1:7272816/1‑35 (MQ=255)
                                aCCCTACAGCCATTCTTTTGTCGTACAGGATGaaa    >  1:18581718/1‑35 (MQ=255)
                                aCCCTACAGCCATTCTTTTGTCGTACAGGATGaaa    >  1:5280586/1‑35 (MQ=255)
                                 ccgctcgcttactcccgagcggctttttttcttta   >  1:6511164‑M1/1‑2 (MQ=255)
                                 ccgctcgcttactcccgagcggctttttttcttta   >  1:13281299‑M1/1‑2 (MQ=255)
                                 ccgctcgcttactcccgagcggctttttatcttta   >  1:9581365‑M1/1‑2 (MQ=255)
                                 ccgctcgcttactcccgagcggctttttatcttta   <  1:2505439‑M1/35‑34 (MQ=255)
                                 cccTACAGCCATTCTTTTGTCGTACAGGATGAAAt   >  1:17896251/1‑35 (MQ=255)
                                  cgctcgcttactcccgagcggctttttatctttag  <  1:3159706‑M1/35‑35 (MQ=255)
                                  cgctcgcttactcccgagcggctttttatctttag  <  1:2060379‑M1/35‑35 (MQ=255)
                                  ccTACAGCCATTCTTTTGTCGTACAGGATGAAAtt  >  1:74919/1‑35 (MQ=255)
                                  ccTACAGCCATTCTTTTGTCGTACAGGATGAAAtt  >  1:4104565/1‑35 (MQ=255)
                                  ccTACAGCCATTCTTTTGTCGTACAGGATGAAAtt  >  1:3157260/1‑35 (MQ=255)
                                  |                                  
GTCAATTATTGTTTACTTTGTGTTTTTTCCCCACCCTACAGCCATTCTTTTGTCGTACAGGATGAAATT  >  REL606/679367‑679435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.