New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 294481647 (0.460)22 (0.210) 8/48 NT 22.6% coding (261/660 nt) rpiA ribose‑5‑phosphate isomerase A
?REL606 3912264 = 104 (1.010)intergenic (+44/‑96) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

Only 100 of 116 total aligned reads displayed.

CCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAA  >  REL606/2944782‑2944850
                                  |                                  
ccgcgccgcCGCCTTTGATCATTTGCATGTGGCCg                                    >  1:10038867/1‑35 (MQ=255)
 cgcgccgcCGCCTTTGATCATTTGCATGTGGCCGt                                   <  1:3327705/35‑1 (MQ=255)
 cgcgccgcCGCCTTTGATCATTTGCATGTGGCCGt                                   <  1:19849668/35‑1 (MQ=255)
 cgcgCCGCCGCCTTTGATCATTTGCATGTGGCCGg                                   >  1:15286121‑M1/1‑34 (MQ=255)
 cgcgCCGCCGCCTTTGATCATTTGCATGTGGCCGg                                   >  1:17921565‑M1/1‑34 (MQ=255)
 cgcgCCGCCGCCTTTGATCATTTGCATGTGGCCGg                                   >  1:10707136‑M1/1‑34 (MQ=255)
  gcgccgcCGCCTTTGATCATTTGCATGTGGCCGtt                                  <  1:16884475/35‑1 (MQ=255)
  gcgcCGCCGCCTTTGATCATTTGCATGTGGCCGgg                                  >  1:7332647‑M1/1‑33 (MQ=255)
  gcgcCGCCGCCTTTGATCATTTGCATGTGGCCGgg                                  >  1:5147931‑M1/1‑33 (MQ=255)
   cgccgccgcCTTTGATCATTTGCATGTGGCCGggg                                 >  1:1757689‑M1/1‑32 (MQ=255)
   cgccgccgcCTTTGATCATTTGCATGTGGCCGTTg                                 <  1:18063050/35‑1 (MQ=255)
    gccgccgccTTTGATCATTTGCATGTGGCCGgggg                                >  1:8562947‑M1/1‑31 (MQ=255)
    gccgccgccTTTGATCATTTGCATGTGGCCGTTGa                                <  1:10972895/35‑1 (MQ=255)
    gccgccgccTTTGATCATTTGCATGTGGCCGTTGa                                <  1:17061976/35‑1 (MQ=255)
    gcccccgccTTTGATCATTTGCATGTGGCCGTTGa                                <  1:12382990/35‑1 (MQ=255)
     ccgccgccTTTGATCATTTGCATGTGGCCGTTGAt                               <  1:2127474/35‑1 (MQ=255)
      cgccgccTTTGATCATTTGCATGTGGCCGTTGAtt                              <  1:13663845/35‑1 (MQ=255)
      cgccgccTTTGATCATTTGCATGTGGCCGGTGGtt                              >  1:11710631/1‑35 (MQ=38)
       gccgccTTTGATCATTTGCATGTGGCCGggggttt                             >  1:9504873‑M1/1‑28 (MQ=255)
       gccgccTTTGATCATTTGCATGTGGCCGgggggtt                             >  1:2110337‑M1/1‑28 (MQ=255)
        ccgccTTTGATCATTTGCATGTGGCCGggggtttt                            >  1:10840791‑M1/1‑27 (MQ=255)
        ccgccTTTGATCATTTGCATGTGGCCGgggggttt                            >  1:15463851‑M1/1‑27 (MQ=255)
         cgccTTTGATCATTTGCATGTGGCCGggggttttt                           >  1:19485750‑M1/1‑26 (MQ=255)
         cgccTTTGATCATTTGCATGTGGCCGggggttttt                           >  1:20350798‑M1/1‑26 (MQ=255)
         cgccTTTGATCATTTGCATGTGGCCGgggggtttt                           >  1:8355659‑M1/1‑26 (MQ=255)
         cgccTTTGATCATTTGCATGTGGCCGTTGATTTCa                           <  1:5891938/35‑1 (MQ=255)
         cgccTTTGATCATTTGCATGTGGCCGTTGATTTCa                           <  1:5995613/35‑1 (MQ=255)
          gccTTTGATCATTTGCATGTGGCCGgggggtttgt                          >  1:5549709‑M1/1‑25 (MQ=255)
          gccTTTGATCATTTGCATGTGGCCGTTGATTTCAt                          <  1:3362168/35‑1 (MQ=255)
          gccTTTGATCATTTGCATGTGGCCGTTGATTTCAt                          <  1:9722417/35‑1 (MQ=255)
           ccTTTGATCATTTGCATGTGGCCGggggttttttt                         >  1:19823674‑M1/1‑24 (MQ=255)
           ccTTTGATCATTTGCATGTGGCCGggggttttttt                         >  1:1835831‑M1/1‑24 (MQ=255)
           ccTTTGATCATTTGCATGTGGCCGggggttttttt                         >  1:5891842‑M1/1‑24 (MQ=255)
            cTTTGATCATTTGCATGTGGCCGggggtttttttt                        >  1:14992251‑M1/1‑23 (MQ=255)
            cTTTGATCATTTGCATGTGGCCGTTGATTTCATCt                        <  1:15688790/35‑1 (MQ=255)
            cTTTGATCATTTGCATGTGGCCGTTGATTTCATCt                        <  1:4364235/35‑1 (MQ=255)
             tttGATCATTTGCATGTGGCCGggggttttttttt                       >  1:9734919‑M1/1‑22 (MQ=255)
             tttGATCATTTGCATGTGGCCGggggttttttttg                       >  1:10627130‑M1/1‑22 (MQ=255)
             tttGATCATTTGCATGTGGCCGgggggtttttttt                       >  1:3599198‑M1/1‑22 (MQ=255)
             tttGATCATTTGCATGTGGCCGgggggtttttttt                       >  1:12694007‑M1/1‑22 (MQ=255)
             tttGATCATTTGCATGTGGCCGgggggtttttttc                       >  1:1654571‑M1/1‑22 (MQ=255)
             tttGATCATTTGCATGTGGCCGgggggtttttctc                       >  1:4119537‑M1/1‑22 (MQ=255)
             tttGATCATTTGCATGTGGCCGTTGATTTCATCTg                       <  1:2924762/35‑1 (MQ=255)
             tttGATCATTTGCATGTGGCCGTTGATTTCATCTg                       <  1:10390680/35‑1 (MQ=255)
             tttGATCATTTGCATGTGGCCGTTGATTTCATCTg                       <  1:14396459/35‑1 (MQ=255)
              ttGATCATTTGCATGTGGCCGggggtttttttttc                      >  1:10125736‑M1/1‑21 (MQ=255)
              ttGATCATTTGCATGTGGCCGgggggttttttttg                      >  1:5128989‑M1/1‑21 (MQ=255)
              ttGATCATTTGCATGTGGCCGTTGATTTCATCTgc                      <  1:15088278/35‑1 (MQ=255)
              ttGATCATTTGCATGTGGCCGTTGATTTCATCTgc                      <  1:17569895/35‑1 (MQ=255)
              ttGATCATTTGCATGTGGCCGTTGATTTCATCTgc                      <  1:13551717/35‑1 (MQ=255)
               tGATCATTTGCATGTGGCCGTTGATTTCATCTgcg                     <  1:10231158/35‑1 (MQ=255)
               tGATCATTTGCATGTGGCCGGGGGTTTCTTCttgg                     >  1:2348551/1‑32 (MQ=16)
                 aTCATTTGCATGTAGCCGTTGATTTCATCTGCGcc                   <  1:19682635/35‑1 (MQ=255)
                  tCATTTGCATGTGGCCGTTGATTTCATCTGCGCCa                  <  1:2321048/35‑1 (MQ=255)
                   cATTTGCATGTGGCCGTTGATTTCATCTGCGCCAt                 <  1:113363/35‑1 (MQ=255)
                   cATGTGCAGATGGCCGTTGATTTCATCTGCGCCAt                 <  1:3962283/35‑1 (MQ=25)
                    aTTTGCATGTTGCCGTTGATTTCATCTGCGCCATc                >  1:15784406/1‑35 (MQ=255)
                    aTTTGCATGTTGCCGTTGATTTCATCTGCGCCATc                >  1:14161595/1‑35 (MQ=255)
                    aTTTGCATGTGGCCGTTGATTTCATCTGCGCCATc                <  1:4628651/35‑1 (MQ=255)
                     tttGCATGTGGCCGTTGATTTCATCTGCGCCATCa               <  1:4289259/35‑1 (MQ=255)
                      ttGCATGTGGCCGTTGATTTCATCTGCGCCATCaa              <  1:14796874/35‑1 (MQ=255)
                      ttGCATGTGGCCGTTGATTTCATCTGCGCCATCaa              <  1:82116/35‑1 (MQ=255)
                       tGCATGTGGCCGTTGATTTCATCTGCGCCATCAAc             <  1:14428985/35‑1 (MQ=255)
                       tGCATGTGGCCGTTGATTTCATCTGCGCCATCAAc             <  1:11044349/35‑1 (MQ=255)
                        gCATGTGGCCGTTGATTTCATCTGCGCCATCAACg            <  1:12725604/35‑1 (MQ=255)
                         cATGTGGCCGTTGATTTCATCTGCGCCATCAACGt           <  1:15865288/35‑1 (MQ=255)
                         cATGTGGCCGTTGATTTCATCTGCGCCATCAACGt           <  1:17772703/35‑1 (MQ=255)
                         cATGTGGCCGTTGATTTCATCTGCGCCATCAACGt           <  1:2555130/35‑1 (MQ=255)
                         cATGTGGCCGTTGATTTCATCTGCGCCATCAACGt           <  1:4366827/35‑1 (MQ=255)
                         cATGTGGCCGTTGATTTCATCTGCGCCATCAACGt           <  1:4395103/35‑1 (MQ=255)
                          aTGTGGCCGTTGATTTCATCTGCGCCATCAACGTa          <  1:19145831/35‑1 (MQ=255)
                            gtgGCCGTTGATTTCATCTGCGCCATCAACGTAGa        <  1:7393989/35‑1 (MQ=255)
                            gtgGCCGTTGATTTCATCTGCGCCATCAACGTAGa        <  1:9444362/35‑1 (MQ=255)
                            gtgGCCGTTGATTTCATCTGCGCCATCAACGTAGa        <  1:9621029/35‑1 (MQ=255)
                              tgCCGTTGATTTCATATGCGCCATCAACGTAGATg      <  1:17504576/34‑1 (MQ=255)
                               gCCGTTGATTTCATCTGCGCAATCAACGTAGATGc     <  1:19222691/35‑1 (MQ=255)
                                tcggggggttttttttgaccttaaaaacataaccg    <  1:19708387‑M1/34‑33 (MQ=255)
                                ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc    <  1:17947440/35‑1 (MQ=255)
                                ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc    >  1:14149701/1‑35 (MQ=255)
                                ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc    >  1:17149431/1‑35 (MQ=255)
                                ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc    >  1:16531942/1‑35 (MQ=255)
                                ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc    >  1:16096038/1‑35 (MQ=255)
                                ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc    <  1:14993352/35‑1 (MQ=255)
                                ccGTTGATTTCATCTGCGCCATCAACGTAGATGcc    <  1:6674848/35‑1 (MQ=255)
                                 cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa   >  1:11326558/1‑35 (MQ=255)
                                 cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa   >  1:10850788/1‑35 (MQ=255)
                                 cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa   <  1:8388891/35‑1 (MQ=255)
                                 cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa   >  1:14547021/1‑35 (MQ=255)
                                 cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa   >  1:10116243/1‑35 (MQ=255)
                                 cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa   >  1:5319274/1‑35 (MQ=255)
                                 cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa   >  1:18648049/1‑35 (MQ=255)
                                 cGTTGATTTCATCTGCGCCATCAACGTAGATGCCa   <  1:2930837/35‑1 (MQ=255)
                                  gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa  <  1:15473961/35‑1 (MQ=255)
                                  gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa  <  1:6290130/35‑1 (MQ=255)
                                  gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa  <  1:5717417/35‑1 (MQ=255)
                                  gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa  <  1:17149744/35‑1 (MQ=255)
                                  gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa  >  1:4606989/1‑35 (MQ=255)
                                  gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa  >  1:4508140/1‑35 (MQ=255)
                                  gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa  >  1:4301887/1‑35 (MQ=255)
                                  gTTGATTTCATCTGCGCCATCAACGTAGATGCCaa  >  1:987789/1‑35 (MQ=255)
                                  |                                  
CCGCGCCGCCGCCTTTGATCATTTGCATGTGGCCGTTGATTTCATCTGCGCCATCAACGTAGATGCCAA  >  REL606/2944782‑2944850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.