New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1760819 =58 (0.560)7 (0.080) 5/42 NT 9.0% coding (575/1701 nt) ydiD hypothetical protein
?REL606 = 4434365 91 (1.010)coding (58/1503 nt) ytfR predicted sugar transporter subunit: ATP‑binding component of ABC superfamily

TGGGTCGTTATCGCCGTGGTCAGTGGGATATTGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1760855‑1760819
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT  <  REL606/4434365‑4434332
                                                                       
TGGGTCGTTATCGCCGTGGTCAGTGGGATATTGTC                                      <  1:4580457/35‑1
TGGGTCGTTATCGCCGTGGTCAGTGGGATATTGTC                                      <  1:2749269/35‑1
TGGGTCGTGATCGCCGTGGTCAGTGGGATATTGTC                                      <  1:14653324/35‑1
 GGGTCGTTATCGCCGTGGTCAGTTGGATATTGTCG                                     >  1:6577011/1‑35
 GGGTCGTTATCGCCGTGGTCAGTGGGATATTGTCG                                     >  1:18458438/1‑35
 GGGTCGTTATCGCCGTGGTCAGTGGGATATTGTCG                                     <  1:6099105/35‑1
  GGTCGTTATCGCCGTGGTCAGTGGGATATTGTCtg                                    >  1:5286153/1‑33
  GGTCGTTATCGCCGTGGTCAGTGGGATATTGTCGG                                    >  1:16222397/1‑35
  GGTCGTTATCGCCGTGGTCAGTGGGATATTGTCGG                                    <  1:78427/35‑1
   GTCGTTATCGCCGTGGTCAGTGGGATATTGTCGGG                                   >  1:11464009/1‑35
   GTCGTTATCGCCGTGGTCAGGGGGATATTGTCGGG                                   >  1:761807/1‑35
     CGTTATCGCCGTGGTCAGTGGGATATTGTCGGGGA                                 >  1:5034415/1‑35
     CGTTATCGCCGTGGTCAGTGGGATATTGTCGGGGA                                 >  1:6767428/1‑35
      GTTATCGCCGTGGTCAGTGGGATATTGTCGGGGga                                >  1:7715556/1‑33
        TATCGCCGTGGTCAGTGGGATATTGTCGGGGAAAA                              >  1:2151917/1‑35
         ATCGCCGTGGTCAGTGGGATATTGTCGGGGAAAAA                             >  1:6349113/1‑35
          TCGCCGTGGTCAGTGGGATATTGTCGGCGAAAAAT                            >  1:17798209/1‑35
            GCCGTGGTCAGTGGGATATTGTCGGGGAAAAATTT                          >  1:1950362/1‑35
            GCCGTGGTCAGTGGGATATTGTCGGGGAAAAACTT                          >  1:2664451/1‑35
            GCCGTGGTCAGTGGGATATTGTCGGGGAAAAACTT                          >  1:1493840/1‑35
              CGTGGTCAGTGGGATATTGTCGGGGAAAAATTTAC                        >  1:9628592/1‑35
                                  CGGGGAAAAATTTACTTAATCCTTCGGTTCGGAGG    >  1:19087128/1‑35
                                  CGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGG    >  1:2217837/1‑35
                                  CGGGGAAAAATTTACTTAATCCTTCGGTGCGGAGG    <  1:1218603/35‑1
                                   GGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGA   >  1:3784254/1‑35
                                   GGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGA   <  1:3102003/35‑1
                                   GGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGA   >  1:16572893/1‑35
                                   GGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGA   <  1:1289196/35‑1
                                   GGGGAAAAATTTACTTAATCCTTCGGTGCGGAGGA   <  1:9098792/35‑1
                                    GGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT  <  1:18481861/35‑1
                                    GGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT  >  1:656950/1‑35
                                    GGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT  <  1:18337673/35‑1
                                    GGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT  <  1:15453095/35‑1
                                    GGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT  <  1:10054729/35‑1
                                                                       
TGGGTCGTTATCGCCGTGGTCAGTGGGATATTGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1760855‑1760819
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGAAAAATTTACTTAATCCTTCGGTGCGGAGGAT  <  REL606/4434365‑4434332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.