New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 594300 =32 (0.310)8 (0.110) 5/34 NT 13.7% coding (902/2241 nt) fepA iron‑enterobactin outer membrane transporter
?REL606 = 3534924 78 (1.070)coding (8/1497 nt) ftsY fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein

Only 100 of 200 total aligned reads displayed.

GCCCAGCCAGGAAAAAAAGCCACGTTTTTTTTCTTTCGCCATTTGCGACTACACTCCTCGCTGTTGCTT  >  REL606/3534890‑3534958
                                  |                                  
gCCCAGCCAGGAAAAAAAGCCACGTTTTTtttctt                                    <  1:9700926/35‑1 (MQ=255)
ccccAGCCAGGAAAAAAAGCCACGTTTTTtttctt                                    <  1:171219/34‑1 (MQ=255)
 cccAGCCAGGAAAAAAAGCCACGTTTTTTTTCTTt                                   <  1:25913‑M2/35‑2 (MQ=255)
 cccAGCCAGGAAAAAAAGCCACGTTTTTTTTCTTt                                   <  1:20319642‑M2/35‑2 (MQ=255)
 cccAGCCAGGAAAAAAAGCCACGTTTTTTTTCTTt                                   <  1:4191817‑M2/35‑2 (MQ=255)
 cccAGCCAGGAAAAAAAGCCACGTTTTTTTTCTTt                                   >  1:4397905‑M2/1‑34 (MQ=255)
  ccagccggGAAAAAAAGCCACGTTTTTTTTCTTtc                                  >  1:16208497‑M2/1‑33 (MQ=255)
   cagccagGAAAAAAAGCCACGTTTTTTTTCTTtcg                                 <  1:16355989‑M2/35‑4 (MQ=255)
    agccagGAAAAAAAGCCACGTTTTTTTTCTTtcgc                                <  1:1509726‑M2/35‑5 (MQ=255)
    agccagGAAAAAAAGCCACGTTTTTTTTCTTtcgc                                >  1:3759764‑M2/1‑31 (MQ=255)
     gccagGAAAAAAAGCCACGTTTTTTTTCTTtcgcc                               >  1:15118720‑M2/1‑30 (MQ=255)
     gccagGAAAAAAAGCCACGTTTTTTTTCTTtcgcc                               >  1:3603600‑M2/1‑30 (MQ=255)
     gccagGAAAAAAAGCCACGTTTTTTTTCTTtcgcc                               >  1:18011728‑M2/1‑30 (MQ=255)
      ccagGAAAAAAAGCCACGTTTTTTTTCTTtcgcca                              >  1:6090654‑M2/1‑29 (MQ=255)
      ccagGAAAAAAAGCCACGTTTTTTTTCTTtcgcca                              >  1:4613755‑M2/1‑29 (MQ=255)
      ccagGAAAAAAAGCCACGTTTTTTTTCTTtcgcca                              <  1:19379184‑M2/35‑7 (MQ=255)
      ccagGAAAAAAAGCCACGTTTTTTTTCTTtcgcca                              >  1:10293839‑M2/1‑29 (MQ=255)
      ccagGAAAAAAAGCCACGTTTTTTTTCTTtcgcca                              <  1:3468440‑M2/35‑7 (MQ=255)
       cagGAAAAAAAGCCACGTTTTTTTTCTTtcgccat                             <  1:19270934‑M2/35‑8 (MQ=255)
       cagGAAAAAAAGCCACGTTTTTTTTCTTtcgccat                             >  1:1855095‑M2/1‑28 (MQ=255)
       cagGAAAAAAAGCCACGTTTTTTTTCTTtcgccat                             <  1:814584‑M2/35‑8 (MQ=255)
       cagGAAAAAAAGCCACGTTTTTTTTCTTtcgccat                             <  1:15297502‑M2/35‑8 (MQ=255)
       cagGAAAAAAAGCCACGTTTTTTTTCTTtcgccat                             <  1:3206793‑M2/35‑8 (MQ=255)
       cagAAAAAAAAGCCACGTTTTTTTTCTTtcgccat                             >  1:3796459‑M2/1‑28 (MQ=255)
        agaaaaaaaaGCCACGTTTTTTTTCTTTCGCCAtt                            <  1:15630566/32‑1 (MQ=255)
        agGAAAAAAAGCCACGTTTTTTTTCTTTCGCCAtt                            >  1:16553326/1‑35 (MQ=255)
         ggAAAAAAAGCCACGTTTTTTTTCTTTCGCCAttt                           <  1:8768176/35‑1 (MQ=255)
          gAAAAAAAGCCACGTTTTTTTTCTTTCGCCATTTg                          <  1:13100615/35‑1 (MQ=255)
          gAAAAAAAGCCACGTTTTTTTTCTTTCGCCATTTg                          >  1:15325106/1‑35 (MQ=255)
          aaaaaaaaGCCACGTTTTTTTTATTTCGCCATTTg                          <  1:4830969/34‑1 (MQ=255)
           aaaaaaaGCCACGTTTTTTTTCTTTCGCCATTTGc                         >  1:19624506/1‑35 (MQ=255)
           aaaaaaaGCCACGTTTTTTTTCTTTCGCCATTTGc                         >  1:5415817/1‑35 (MQ=255)
           aaaaaaaGCCACGTTTTTTTTCTTTCGCCATTTGc                         >  1:4789539/1‑35 (MQ=255)
           aaaaaaaGCCACGTTTTTTTTCTTTCGCCATTTGc                         <  1:20555812/35‑1 (MQ=255)
           aaaaaaaGCCACGTTTTTTTTCTTTCGCCATTTGc                         >  1:20443776/1‑35 (MQ=255)
            aaaaaaGCCACGTTTTTTTTCTTTCGCCATTTGCg                        <  1:11540230/35‑1 (MQ=255)
            aaaaaaGCCACGTTTTTTTTCTTTCGCCATTTGCg                        <  1:142783/35‑1 (MQ=255)
             aaaaaGCCACGTTTTTTTTCTTTCGCCATTTGCGa                       >  1:12489823/1‑35 (MQ=255)
               aaaGCCACGTTTTTTTTCTTTCGCCATTTGCGACt                     <  1:2680165/35‑1 (MQ=255)
               aaaGCCACGTTTTTTTTCTTTCGCCATTTGCGACt                     >  1:9390578/1‑35 (MQ=255)
                aaGCCACGTTTTTTTTCTTTCGCCATTTGCGACTa                    >  1:2029104/1‑35 (MQ=255)
                aaGCCACGTTTTTTTTCTTTCGCCATTTGCGACTa                    >  1:20022285/1‑35 (MQ=255)
                aaGCCACGTTTTTTTTCTTTCGCCATTTGCGACTa                    >  1:14562314/1‑35 (MQ=255)
                 aGCCACGTTTTTTTTCTTTCGCCATTTGCGACTac                   <  1:1988222/35‑1 (MQ=255)
                 aGCCACGTTTTTTTTCTTTCGCCATTTGCGACTac                   >  1:10597432/1‑35 (MQ=255)
                 aGCCACGTTTTTTTTCTTTCGCCATTTGCGACTac                   <  1:14704816/35‑1 (MQ=255)
                 aGCCACGTTTTTTTTCTTTCGCCATTTGCGACTac                   <  1:11089393/35‑1 (MQ=255)
                 aGCCACGTTTTTTTTCTTTCGCCATTTGCGACTac                   <  1:7703930/35‑1 (MQ=255)
                  gCCACGTTTTTTTTCTTTCGCCATTTGCGACTaca                  <  1:15463883/35‑1 (MQ=255)
                   ccACGTTTTTTTTCTTTCGCCATTTGCGACTacac                 <  1:17959755/35‑1 (MQ=255)
                   ccACGTTTTTTTTCTTTCGCCATTTGCGACTacac                 <  1:1406283/35‑1 (MQ=255)
                   ccACGTTTTTTTTCTTTCGCCATTTGCGACTacac                 <  1:17244028/35‑1 (MQ=255)
                   ccACGTTTTTTTTCTTTCGCCATTTGCGACTacac                 >  1:11919245/1‑35 (MQ=255)
                    cACGTTTTTTTTCTTTCGCCATTTGCGACTACAct                >  1:15009057/1‑35 (MQ=255)
                     aCGTTTTTTTTCTTTCGCCATTTGCGACTACActc               >  1:14653763/1‑35 (MQ=255)
                     aCGTTTTTTTTCTTTCGCCATTTGCGACTACActc               <  1:5183058/35‑1 (MQ=255)
                     aCGTTTTTTTTCTTTCGCCATTTGCGACTACActc               <  1:17011544/35‑1 (MQ=255)
                      cGTTTTTTTTCTTTCGCCATTTGCGACTACActcc              >  1:13815946/1‑35 (MQ=255)
                       gTTTTTTTTCTTTCGCCATTTGCGACTACActcct             <  1:19738201/35‑1 (MQ=255)
                       gTTTTTTTTCTTTCGCCATTTGCGACTACActcct             >  1:18257863/1‑35 (MQ=255)
                        ttttttttTTTtcgccatatttcgagcgggtatag            >  1:9648395‑M2/1‑11 (MQ=255)
                        ttttttttCTTTCGCCATTTGCGACTACActcctc            <  1:5543629/35‑1 (MQ=255)
                        ttttttttCTTTCGCCATTTGCGACTACActcctc            <  1:16829906/35‑1 (MQ=255)
                        ttttttttCTTTCGCCATTTGCGACTACActcctc            <  1:19970917/35‑1 (MQ=255)
                         tttttttTTTtcgccatatttcgagcgggtatagg           >  1:3879818‑M2/1‑10 (MQ=255)
                         tttttttCTTTCGCCATTTGCGACTACACTCCTCg           >  1:9041328/1‑35 (MQ=255)
                         tttttttCTTTCGCCATTTGCGACTACACTCCTCg           <  1:12166399/35‑1 (MQ=255)
                         tttttttCTTTCGCCATTTGCGACTACACTCCTCg           <  1:13578796/35‑1 (MQ=255)
                         tttttttCTTTCGCCATTTGCGACTACACTCCTCg           >  1:1318598/1‑35 (MQ=255)
                         tttttttCTTTCGCCATTTGCGACTACACTCCTCg           >  1:3390133/1‑35 (MQ=255)
                          ttttttTTTtcgccatatttcgagcgggtatagga          >  1:11228723‑M2/1‑9 (MQ=255)
                          ttttttCTTTCGCCATTTGCGACTACACTCCTCGc          >  1:10001684/1‑35 (MQ=255)
                          ttttttCTTTCGCCATTTGCGACTACACTCCTCGc          <  1:12880274/35‑1 (MQ=255)
                           tttttTTTtcgccatatttcgagcgggtataggaa         >  1:11204005‑M2/1‑8 (MQ=255)
                           tttttCTTTCGCCATTTGCGACTACACTCCTCGCt         >  1:1951723/1‑35 (MQ=255)
                            ttttCTTTCGCCATTTGCGACTACACTCCTCGCTg        >  1:10660458/1‑35 (MQ=255)
                            ttttCTTTCGCCATTTGCGACTACACTCCTCGCTg        <  1:8413061/35‑1 (MQ=255)
                             tttttttcgccatatttcgagcgggtataggaatc       >  1:10483898‑M2/1‑6 (MQ=255)
                             tttttttcgccatatttcgagcgggtataggaatc       >  1:6569074‑M2/1‑6 (MQ=255)
                             tttctttcGCCATTTGCGACTACACTCCTCGCTGt       >  1:17909256/1‑35 (MQ=255)
                             tttctttcGCCATTTGCGACTACACTCCTCGCTGt       <  1:7345265/35‑1 (MQ=255)
                             tttctttcGCCATTTGCGACTACACTCCTCGCTGt       <  1:7005218/35‑1 (MQ=255)
                             tttctttcGCAATTTGCGACTACACTCCTCGCTGt       <  1:17481873/35‑1 (MQ=255)
                              ttttttcgccatatttcgagcgggtataggaatcg      >  1:5445805‑M2/1‑5 (MQ=255)
                              ttttttcgccatatttcgagcgggtataggaatcg      >  1:2727194‑M2/1‑5 (MQ=255)
                              ttctttcGCCATTTGCGACTACACTCCTCGCTGtt      >  1:18742873/1‑35 (MQ=255)
                               tttttcgccatatttcgagcgggtataggaatcgg     >  1:1750447‑M2/3‑4 (MQ=255)
                               tttttcgccatatttcgagcgggtataggaatcgg     >  1:16297001‑M2/3‑4 (MQ=255)
                               tctttcGCCATTTGCGACTACACTCCTCGCTGTTg     >  1:810162/1‑35 (MQ=255)
                               tctttcGCCATTTGCGACTACACTCCTCGCTGTTg     >  1:6247001/1‑35 (MQ=255)
                               tctttcGCCATTTGCGACTACACTCCTCGCTGTTg     >  1:14244662/1‑35 (MQ=255)
                                ttttcgccatatttcgagcgggtataggaatcgga    >  1:12294432‑M2/2‑3 (MQ=255)
                                ttttcgccatatttcgagcgggtataggaatcgga    >  1:16758680‑M2/2‑3 (MQ=255)
                                ctttcGCCATTTGCGACTACACTCCTCGCTGTTGc    >  1:11432725/1‑35 (MQ=255)
                                ctttcGCCATTTGCGAATACACTCCTCGCTGTTGc    <  1:5057005/35‑1 (MQ=255)
                                 tttcGCCATTTGCGACTACACTCCTCGCTGTTGCt   <  1:19140793/35‑1 (MQ=255)
                                 tttcGCCATTTGCGACTACACTCCTCGCTGTTGCt   <  1:2992278/35‑1 (MQ=255)
                                  ttcGCCATTTGCGACTACACTCCTCGCTGTTGCtt  >  1:7515795/1‑35 (MQ=255)
                                  ttcGCCATTTGCGACTACACTCCTCGCTGTTGCtt  >  1:15735662/1‑35 (MQ=255)
                                  ttcGCCATTTGCGACTACACTCCTCGCTGTTGCtt  <  1:2541822/35‑1 (MQ=255)
                                  |                                  
GCCCAGCCAGGAAAAAAAGCCACGTTTTTTTTCTTTCGCCATTTGCGACTACACTCCTCGCTGTTGCTT  >  REL606/3534890‑3534958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.