New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 519489 = | 96 (0.930) | 12 (0.160) | 3/36 | NT | 16.6% | coding (644/1668 nt) | fdrA | membrane protein FdrA |
? | REL606 | 1815514 = | 49 (0.640) | coding (1030/1491 nt) | ynjC | fused transporter subunits of ABC superfamily: membrane components |
Only 100 of 179 total aligned reads displayed.
ACCGGGATTCAGGAGCTGTGCTCACAGATTGCGCTGGCA‑GGGGAGGGAATTACTCACGCGATTGGCCTT > REL606/519455‑519523 | gccatagcgccagcgtgtactggcccgccaccagt < 1:5089823‑M1/1‑1 (MQ=255) gccatagcgccagcgtgtactggcccgccaccagt < 1:7658618‑M1/1‑1 (MQ=255) aCCGGGATTCAGGAGCTGTGCTCACAGATTGCGCt > 1:7268692/1‑35 (MQ=255) aCCGGGATTCAGGAGCTGTGCTCACAGATTGCGCt > 1:15859345/1‑35 (MQ=255) ccatagcgccagcgtgtactggtccgccaccagTg < 1:538586‑M1/2‑1 (MQ=255) ccatagcgccagcgtgtactggcccgccaccagTg < 1:6209626‑M1/2‑1 (MQ=255) ccGGGATTCAGGAGCTGTGCTCACAGATTGCGCTg > 1:16548815/1‑35 (MQ=255) catagcgccagcgtgtactggcccgccaccagTgg < 1:14336194‑M1/3‑1 (MQ=255) gggATTCAGGAGCTGTGCTCACAGATTGCGCTGGc < 1:6469081/35‑1 (MQ=255) gggATTCAGGAGCTGTGCTCACAGATTGCGCTGGc < 1:19988502/35‑1 (MQ=255) tagcgccagcgtgtactggcccgccaccagtgaga < 1:8522403‑M1/5‑4 (MQ=255) ggATTCAGGAGCTGTGCTCACATATTGCGCTGGCa > 1:17708190/1‑35 (MQ=255) ggATTCAGGAGCTGTGCTCACATATTGCGCTGGCa > 1:5513403/1‑35 (MQ=255) ggATTCAGGAGCTGTGCTCACAGATTGCGCTGGCa > 1:3075499/1‑35 (MQ=255) ggATTCAGGAGCTGTGCTCACAGATTGCGCTGGCa > 1:9179391/1‑35 (MQ=255) ggATTCAGGAGCTGTGCTCACAGATTGCGCTGGCa > 1:20091435/1‑35 (MQ=255) gATTCAGGAGCTGTGCTCACAGATTGGTCTGGccg > 1:8036993/1‑33 (MQ=25) gATTCAGGAGCTGTGCTCACAGATTGCGCTGGCA‑g > 1:13382635/1‑35 (MQ=255) gATTCAGGAGCTGTGCTCACAGATTGCGCTGGCA‑g < 1:15541532/35‑1 (MQ=255) gATTCAGGAGCTGTGCTCACAGATTGCGCTGGCA‑g < 1:576968/35‑1 (MQ=255) gATTCAGGAGCTGTGCTCACAGATTGCGCTGGCA‑g > 1:20522706/1‑35 (MQ=255) agcgccagcgtgtactggcccgccaccagTGGCA‑g < 1:7553831‑M1/6‑1 (MQ=255) agcgccagcgtgtactgccccgccaccagTGGCA‑g > 1:16334997‑M1/30‑35 (MQ=255) aTTCAGGAGCTGTGCTCACAGATTGCGCTGGCA‑gg < 1:14521037/35‑1 (MQ=255) aTTCAGGAGCTGTGCTCACAGATTGCGCTGGCA‑gg > 1:13557201/1‑35 (MQ=255) ttCAGGAGCTGTGCTCACAGATTGCGCTGGCA‑ggg < 1:14714028/35‑1 (MQ=255) ttCAGGAGCTGTGCTCACAGATTGCGCTGGCA‑ggg < 1:9351129/35‑1 (MQ=255) cgccagcgtgtactggcccgccaccagTGGCA‑ggg < 1:11866047‑M1/8‑1 (MQ=255) cgccagcgtgtactggcccgccaccagTGGCA‑ggg < 1:10500668‑M1/8‑1 (MQ=255) tCAGGAGCTGTGCTCACAGATTGCGCTTGCA‑gggg > 1:4372008/1‑35 (MQ=255) tCAGGAGCTGTGCTCACAGATTGCGCTGGCA‑gggg < 1:13060406/35‑1 (MQ=255) cAGGAGCTGTGCTCACAGATTGCGCTGGCA‑ggggg > 1:14056428/1‑34 (MQ=255) cAGGAGCTGTGCTCACAGATTGCGCTGGCA‑Gggga > 1:3923882/1‑35 (MQ=255) cAGGAGCTGTGCTCACAGATTGCGCTGGCA‑Gggga > 1:4451449/1‑35 (MQ=255) cAGGAGCTGTGCTCACAGATTGCGCTGGCA‑Gggga < 1:4479478/35‑1 (MQ=255) cAGGAGCTGTGCTCACAGATTGCGCTGGCA‑Gggga < 1:8443663/35‑1 (MQ=255) cagcgtgtactggcccgccaccagTGGca‑ggggcg < 1:1027255‑M1/11‑3 (MQ=255) cagcgtgtactggcccgccaccagTGGca‑ggggcg < 1:5344929‑M1/11‑3 (MQ=255) aGGAGCTGTGCTCACAGATTGCGCTGGCA‑Ggggag < 1:15697413/35‑1 (MQ=255) ggAGCTGTGCTCACAGATTGCGCTGGCA‑Ggggagg > 1:7771955/1‑35 (MQ=255) ggAGCTGTGCTCACAGATTGCGCTGGCA‑Ggggagg < 1:17464166/35‑1 (MQ=255) gcgtgtactggcccgccaccagTGGCA‑Gggggggg < 1:933670‑M1/13‑1 (MQ=255) gcgtgtactggcccgccaccagTGGCA‑Ggggcggg < 1:13665456‑M1/13‑1 (MQ=255) gcgtgtactggcccgccaccagTGGCA‑Ggggcggg < 1:19340800‑M1/13‑1 (MQ=255) gcgtgtactggcccgccaccagTGGCA‑Ggggcggg < 1:11872984‑M1/13‑1 (MQ=255) gcgtgtactggcccgccaccagTGGCA‑Ggggaggg < 1:17949951‑M1/13‑1 (MQ=255) gcgtgtactggcccgccaccagTGGCA‑Ggggaggg < 1:4864983‑M1/13‑1 (MQ=255) gcgtgtactggcccgccaccagTGGCA‑Gggcaggg < 1:5324515‑M1/13‑1 (MQ=255) gAGCTGTGCTCACAGATTGCGCTGGCA‑Ggggaggg < 1:5258217/35‑1 (MQ=255) gAGCTGTGCTCACAGATTGCGCTGGCA‑Ggggaggg > 1:13336196/1‑35 (MQ=255) cgtgtactggcccgccaccagTGGCA‑Ggggcggga < 1:14122665‑M1/14‑1 (MQ=255) cgtgtactggcccgccaccagTGGCA‑Ggggaggga < 1:1683536‑M1/14‑1 (MQ=255) aGCTGTGCTCACAGATTGCGCTGGCA‑Ggggggggg > 1:95811/1‑34 (MQ=255) aGCTGTGCTCACAGATTGCGCTGGCA‑Ggggagggg > 1:19923880/1‑34 (MQ=255) aGCTGTGCTCACAGATTGCGCTGGCA‑Ggggaggga > 1:9653275/1‑35 (MQ=255) gCTGTGCTCACAGATTGCGCTGGCA‑GGGGAGGGaa < 1:15035302/35‑1 (MQ=255) cTGTGCTCACAGATTGCGCTGGCA‑GGGGAGGGCAt > 1:12960425/1‑35 (MQ=255) tgtgCTCACAGATTGCGCTGGCA‑GGGGAGGGGAtt > 1:6566044/1‑35 (MQ=255) tgtgCTCACAGATTGCGCTGGCA‑GGGGAGGGAAtt < 1:2755184/35‑1 (MQ=255) tgtgCTCACAGATTGCGCTGGCA‑GGGGAGGGAAtt < 1:4893744/35‑1 (MQ=255) tgtgCTCACAGATTGCGCTGGCA‑GGGGAGGGAAtt > 1:11916631/1‑35 (MQ=255) gtgCTCACAGATTGCGCTGGCA‑GGGGAGGGAATTa > 1:7090290/1‑35 (MQ=255) tgCTCACAGATTGCGCTGGCA‑GGGGGGGGAATTAc > 1:2969295/1‑35 (MQ=255) tgCTCACAGATTGCGCTGGCA‑GGGGAGGGAATTAc < 1:4244929/35‑1 (MQ=255) gCTCACAGATTGCGCTGGCA‑GGGGAGGGAATTACt > 1:19391737/1‑35 (MQ=255) gCTCACAGATTGCGCTGGCA‑GGGGAGGGAATTACt > 1:6319769/1‑35 (MQ=255) cTCACAGATTGCGCTGGCA‑GGGGAGGGAATTACTc > 1:15274729/1‑35 (MQ=255) cTCACAGATTGCGCTGGCA‑GGGGAGGGAATTACTc < 1:2321897/35‑1 (MQ=255) tCACAGATTGCGCTGGCA‑GGGGAGGGAATTACTCa < 1:8017050/35‑1 (MQ=255) tCACAGATTGCGCTGGCA‑GGGGAGGGAATTACTCa < 1:931168/35‑1 (MQ=255) cacaGATTGCGCTGGCAGGGGGAGGGAATTACTcg < 1:16681937/35‑2 (MQ=37) cacaGATTGCGCTGGCA‑GGGGAGGGAATTACTCAc > 1:20375537/1‑35 (MQ=255) cacaGATTGCGCTGGCA‑GGGGAGGGAATTACTCAc > 1:19125834/1‑35 (MQ=255) cacaGATTGCGCTGGCA‑GGGGAGGGAATTACTCAc < 1:18217484/35‑1 (MQ=255) acaGATTGCGCTGGCA‑GGGGAGTGAATTACTCAcg > 1:3108048/1‑35 (MQ=255) acaGATTGCGCTGGCA‑GGGGAGGGAATTACTCAcg < 1:11406843/35‑1 (MQ=255) acaGATTGCGCTGGCA‑GGGGAGGGAATTACTCAcg < 1:3350793/35‑1 (MQ=255) caGATTGCGCTGGCA‑GGGGAGGGAATTACTCAcgc < 1:4547117/35‑1 (MQ=255) caGATTGCGCTGGCA‑GGGGAGGGAATTACTCAcgc > 1:2411343/1‑35 (MQ=255) caGATTGCGCTGGCA‑GGGGAGGGAATTACTCAcgc < 1:12722620/35‑1 (MQ=255) caGATTGCGCTGGCA‑GGGGAGGGAATTACTCAcgc > 1:16255044/1‑35 (MQ=255) aGATTGCGCTGGCA‑GGGGAGGGAATTACTCAcgcg < 1:12064762/35‑1 (MQ=255) aGATTGCGCTGGCA‑GGGGAGGGAATTACTCAcgcg > 1:1787182/1‑35 (MQ=255) gATTGCGCTGGCA‑GGGGAGGGAATTACTCACGCGa > 1:10064014/1‑35 (MQ=255) aTTGCGCTGGCA‑GGGGAGGGAATTACTCACGCGAt < 1:3406847/35‑1 (MQ=255) ttGCGCTGGCA‑GGGGAGGGAATTACTCACGCGAtt < 1:7576920/35‑1 (MQ=255) ttGCGCTGGCA‑GGGGAGGGAATTACTCACGCGAtt < 1:13379846/35‑1 (MQ=255) ttGCGCTGGCA‑GGGGAGGGAATTACTCACGCGAtt > 1:12200562/1‑35 (MQ=255) gctcTGGCA‑GGGGAGGGAATTACTCACGCGATTgg < 1:1383149/32‑1 (MQ=255) gcgcTGGCA‑GGGGAGGGAATTACTCACGCGATTgg < 1:6743331/35‑1 (MQ=255) gcgcTGGCA‑GGGGAGGGAATTACTCACGCGATTgg > 1:12883657/1‑35 (MQ=255) cTGGCA‑GGGGAGGGAATTACTCACGCGATTTGCCt > 1:8941516/1‑35 (MQ=255) cTGGCA‑GGGGAGGGAATTACTCACGCGATTGGCCt > 1:19036539/1‑35 (MQ=255) cTGGCA‑GGGGAGGGAATTACTCACGCGATTGGCCt > 1:16961419/1‑35 (MQ=255) cTGGCA‑GGGGAGGGAATTACTCACGCGATTGGCCt > 1:6595630/1‑35 (MQ=255) cTGGCA‑GGGGAGGGAATTACTCACGCGATTGGCCt < 1:19586308/35‑1 (MQ=255) cTGGCA‑GGGGAGGGAATTACTCACGCGATTGGCCt > 1:485619/1‑35 (MQ=255) TGGCA‑GGGGAGGGAATTACTCACGCGATTGGCCtt > 1:6870233‑M1/1‑35 (MQ=255) TGGCA‑GGGGAGGGAATTACTCACGCGATTGGCCtt > 1:15297968‑M1/1‑35 (MQ=255) TGGCA‑GGGGAGGGAATTACTCACGCGATTGGCCtt > 1:14865770‑M1/1‑35 (MQ=255) | ACCGGGATTCAGGAGCTGTGCTCACAGATTGCGCTGGCA‑GGGGAGGGAATTACTCACGCGATTGGCCTT > REL606/519455‑519523 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |