New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 699047102 (0.990)3 (0.040) 3/36 NT 4.6% coding (1314/1320 nt) potE putrescine/proton symporter: putrescine/ornithine antiporter
?REL606 1115826 = 48 (0.620)coding (428/834 nt) csgG outer membrane lipoprotein

Only 100 of 200 total aligned reads displayed.

TTCAATCGCCCTTTTTTACTTTGTTTTATTAACCGTGTTTATTTTTCAGTTCAAAGCGTGGTGATACCA  >  REL606/699013‑699081
                                  |                                  
ttCAATCGCCCTTTTTTACTTTGTTTTATTAACCG                                    <  1:1757624‑M1/35‑1 (MQ=255)
ttCAATCGCCCTTTTTTACTTTGTTTTATTAACCG                                    <  1:5819730‑M1/35‑1 (MQ=255)
ttCAATCGCCCTTTTTTACTTTGTTTTATTAACCG                                    >  1:1412544‑M1/1‑35 (MQ=255)
 tCAATCGCCCTTTTTTACTTTGTTTTATTAACCgt                                   <  1:5423955/35‑1 (MQ=255)
 tCAATCGCCCTTTTTTACTTTGTTTTATTAACCgt                                   <  1:14931105/35‑1 (MQ=255)
  cAATCGCCCTTTTTTACTTTGTTTTATTAACCgtg                                  <  1:6695648/35‑1 (MQ=255)
  cAATCGCCCTTTTTTACTTTGTTTTATTAACCgtg                                  <  1:5207133/35‑1 (MQ=255)
   aaTCGCCCTTTTTTACTTTGTTTTATTAACCgtgt                                 <  1:11722022/35‑1 (MQ=255)
   aaTCGCCCTTTTTTACTTTGTTTTATTAACCgtgt                                 <  1:7357751/35‑1 (MQ=255)
    aTCGCCCTTTTTTACTTTGTTTTATTAACCGTGtt                                >  1:2388813/1‑35 (MQ=255)
    aTCGCCCTTTTTTACTTTGTTTTATTAACCGTGtt                                >  1:10402143/1‑35 (MQ=255)
    aTCGCCCTTTTTTACTTTGTTTTATTAACCGTGtt                                >  1:9668448/1‑35 (MQ=255)
      cGCCCTTTTTTACTTTGTTTTATTAACCGTGTTTa                              <  1:18382226/35‑1 (MQ=255)
      cGCCCTTTTTTACTTTGTTTTATTAACCGTGTTTa                              <  1:16700060/35‑1 (MQ=255)
      cGCCCTTTTTTACTTTGTTTTATTAACCGTGTTTa                              <  1:10703614/35‑1 (MQ=255)
       gCCCTTTTTTACTTTGTTTTATTAACCGTGTTTAt                             <  1:10276307/35‑1 (MQ=255)
       gCCCTTTTTTACTTTGTTTTATTAACCGTGTTTAt                             >  1:20134383/1‑35 (MQ=255)
        cccTTTTTTACTTTGTTTTATTAACCGTGTTTAtt                            <  1:931397/35‑1 (MQ=255)
        cccTTTTTTACTTTGTTTTATTAACCGTGTTTAtt                            <  1:7266907/35‑1 (MQ=255)
        cccTTTTTTACTTTGTTTTATTAACAGTGTTTAtt                            <  1:10903597/35‑1 (MQ=255)
         ccTTTTTTACTTTGTTTTATTAACCGTGTTTAttt                           <  1:1772348/35‑1 (MQ=255)
         ccTTTTTTACTTTGTTTTATTAACCGTGTTTAttt                           <  1:17662952/35‑1 (MQ=255)
         ccTTTTTTACTTTGTTTTATTAACCGTGTTTAttt                           <  1:18773651/35‑1 (MQ=255)
          cTTTTTTACTTTGTTTTATTAACCGTGTTTAtttt                          <  1:13635263/35‑1 (MQ=255)
           ttttttACTTTGTTTTATTAACCGTGTTTAttttt                         <  1:6185903/35‑1 (MQ=255)
            tttttACTTTGTTTTATTAACCGTGTTTATTTTTc                        <  1:18326536/35‑1 (MQ=255)
             ttttACTTTGTTTTATTAACCGTGTTTATTTTTCa                       >  1:12903663/1‑35 (MQ=255)
             ttttACTCTGTTTTATTAACCGTGTTTATTTTTCa                       <  1:15334285/35‑1 (MQ=255)
              tttACTTTGTTTTATTAACCGTGTTTATTTTTCAg                      >  1:15041659/1‑35 (MQ=255)
              tttACTTTGTTTTATTAACCGTGTTTATTTTTCAg                      >  1:16806641/1‑35 (MQ=255)
              tttACTTTGTTTTATTAACCGTGTTTATTTTTCAg                      <  1:20184391/35‑1 (MQ=255)
               ttACTTTGTTTTATTAACCGTGTTTATTTTTCAGt                     <  1:8119874/35‑1 (MQ=255)
               ttACTTTGTTTTATTAACCGTGTTTATTTTTCAGt                     >  1:7659690/1‑35 (MQ=255)
               ttACTTTGTTTTATTAACCGTGTTTATTTTTCAGt                     >  1:13965175/1‑35 (MQ=255)
               ttACTTTGTTTTATTAACCGTGTTTATTTTTCAGt                     >  1:19597663/1‑35 (MQ=255)
               ttAATTTGTTTTATTAACCGTGTTTATTTTTCAGt                     <  1:12355353/35‑1 (MQ=255)
                tACTTTGTTTTATTAACCGTGTTTATTTTTCAGtt                    <  1:10839417/35‑1 (MQ=255)
                 aCTTTGTTTTATTAACCGTGTTTATTTTTCAGTTc                   <  1:17259688/35‑1 (MQ=255)
                  cTTTGTTTTATTAACCGTGTTTATTTTTCAGTTCa                  <  1:947224/35‑1 (MQ=255)
                  cTTTGTTTTATTAACCGTGTTTATTTTTCAGTTCa                  >  1:18685095/1‑35 (MQ=255)
                  cTTTGTTTTATTAACCGTGTTTATTTTTCAGTTCa                  >  1:11944547/1‑35 (MQ=255)
                   tttGTTTTATTAACCGTGTTTATTTTTCAGTTCaa                 <  1:1528197/35‑1 (MQ=255)
                   tttGTTTTATTAACCGTGTTTATTTTTCAGTTCaa                 >  1:3581027/1‑35 (MQ=255)
                   tttGTTTTATTAACCGTGTTTATTTTTCAGTTCaa                 <  1:12770638/35‑1 (MQ=255)
                    ttGTTTTATTAACAGTGTTTATTTTTCAGTTCaaa                <  1:16536752/35‑1 (MQ=255)
                     tGTTTTATTAACCGTGTTTATTTTTCAGTTCAAAg               >  1:19067007/1‑35 (MQ=255)
                     tGTTTTATTAACCGTGTTTATTTTTCAGTTCAAAg               >  1:7323190/1‑35 (MQ=255)
                     tGTTTTATTAACCGTGTTTATTTTTCAGTTCAAAg               <  1:8457928/35‑1 (MQ=255)
                      nntttANTAACCGTGTTTATTTTTCAGTTCAAAGc              <  1:9011381/33‑1 (MQ=255)
                      gTTTTATTAACCGTGTTTATTTTTCAGTTCAAAGc              >  1:5524207/1‑35 (MQ=255)
                      gTTTTATTAACCGTGTTTATTTTTCAGTTCAAAGc              <  1:19674938/35‑1 (MQ=255)
                      gTTTTATTAACCGTGTTTATTTTTCAGTTCAAAGc              >  1:4517118/1‑35 (MQ=255)
                      gTTTTATTAACCGTGTTTATTTTTCAGTTCAAAGc              >  1:9807719/1‑35 (MQ=255)
                       ttttATTACCCGataatcgaaccttcaaccatgat             <  1:4410517‑M1/35‑24 (MQ=255)
                        tttATTAACCGTGTTTATTTTTCAGTTCAAAGCgt            <  1:7287244/35‑1 (MQ=255)
                         ttattaCCCGataatcgaaccttcaaccatgatat           <  1:7347313‑M1/35‑26 (MQ=255)
                         ttattaACCGTGTTTATTTTTCAGTTCAAAGCgtt           >  1:14818283/1‑34 (MQ=255)
                         ttattaACCGTGTTTATTTTTCAGTTCAAAGCgtg           >  1:13032377/1‑35 (MQ=255)
                          tattaACCGTGTTTATTTTTCAGTTCAAAGCgtgg          >  1:4784770/1‑35 (MQ=255)
                           tttacCCGataatcgaaccttcaaccatgatattt         <  1:19436601‑M1/34‑28 (MQ=255)
                           attaACCGTGTTTATTTTTCAGTTCAAAGCgtggt         >  1:14373727/1‑35 (MQ=255)
                           attaACCGTGTTTATTTTTCAGTTCAAAGCgtggt         <  1:20393899/35‑1 (MQ=255)
                           attaACCGTGTTTATTTTTCAGTTCAAAGCgtggt         <  1:3855094/35‑1 (MQ=255)
                            ttaCCCGataatcgaaccttcaaccatgatatttg        <  1:1609221‑M1/35‑29 (MQ=255)
                            ttaACCTTGTTTATTTTTCAGTTCAAAGCgtggtg        >  1:5923006/1‑35 (MQ=255)
                            ttaACCGTGTTTATTTTTCAGTTCAAAGCgtggtg        >  1:6922283/1‑35 (MQ=255)
                            ttaACCGTGTTTATTTTTCAGTTCAAAGCgtggtg        >  1:16291694/1‑35 (MQ=255)
                            ttaACCGTGTTTATTTTTCAGTTCAAAGCgtggtg        >  1:10020361/1‑35 (MQ=255)
                            ttaACCGTGTTTATTTTTCAGTTCAAAGCgtggtg        >  1:2509112/1‑35 (MQ=255)
                             aacccgataatcgaaccttcaaccatgatatttgc       <  1:1334634‑M1/32‑30 (MQ=255)
                              acccgataatcgaaccttcaaccatgatatttgcc      <  1:10563753‑M1/33‑31 (MQ=255)
                              aaCCGataatcgaaccttcaaccatgatatttgcc      >  1:14558672‑M1/1‑5 (MQ=255)
                              aaCCGataatcgaaccttcaaccatgatatttgcc      >  1:8854644‑M1/1‑5 (MQ=255)
                              aaCCGTGTTTATTTTTCAGTTCAAAGCGTGGTGAt      <  1:7456381/35‑1 (MQ=255)
                              aaCCGTGTTTATTTTTCAGTTCAAAGCGTGGTGAt      <  1:5349906/35‑1 (MQ=255)
                              aaCCGTGTTTATTTTTCAGTTCAAAGCGTGGTGAt      <  1:16637655/35‑1 (MQ=255)
                               cccgataatcgaaccttcaaccatgatatttgccg     <  1:19909414‑M1/34‑32 (MQ=255)
                               aCCGataatcgaaccttcaaccatgatatttgccg     >  1:12459575‑M1/1‑4 (MQ=255)
                               aCCGataatcgaaccttcaaccatgatatttgccg     >  1:8005977‑M1/1‑4 (MQ=255)
                               aCCGTGTTTATTTTTCAGTTCAAAGCGTGGTGATa     >  1:15947802/1‑35 (MQ=255)
                               aCCGTGTTTATTTTTCAGTTCAAAGCGTGGTGATa     >  1:16196757/1‑35 (MQ=255)
                               aCCGTGTTTATTTTTCAGTTCAAAGCGTGGTGATa     >  1:8728426/1‑35 (MQ=255)
                               aCCGTGTTTATTTTTCAGTTCAAAGCGTGGTGATa     >  1:4934548/1‑35 (MQ=255)
                               aCCGTGTTTATTTTTCAGTTCAAAGCGTGGTGATa     >  1:4620258/1‑35 (MQ=255)
                                ccGataatcgaaccttcaaccatgatatttgccgc    <  1:9204716‑M1/35‑33 (MQ=255)
                                ccGataatcgaaccttcaaccatgatatttgccgc    >  1:7119290‑M1/1‑3 (MQ=255)
                                ccGataatcgaaccttcaaccatgatatttgccgc    <  1:18107064‑M1/35‑33 (MQ=255)
                                ccGTGTTTATTTTTCAGTTCAAAGCGTGGTGATAc    >  1:8066261/1‑35 (MQ=255)
                                ccGTGTTTATTTTTCAGTTCAAAGCGTGGTGATAc    <  1:19187579/35‑1 (MQ=255)
                                ccGTGTTTATTTTTCAGTTCAAAGCGTGGTGATAc    >  1:2928805/1‑35 (MQ=255)
                                 cGataatcgaaccttcaaccatgatatttgccgcc   >  1:12578887‑M1/1‑2 (MQ=255)
                                 cGataatcgaaccttcaaccatgatatttgccgcc   >  1:20313118‑M1/1‑2 (MQ=255)
                                 cGataatcgaaccttcaaccatgatatttgccgcc   >  1:11327226‑M1/1‑2 (MQ=255)
                                 cGataatcgaaccttcaaccatgatatttgccgcc   <  1:20436379‑M1/35‑34 (MQ=255)
                                 cGTGTTTATTTTTCAGTTCAAAGCGTGGTGATAcc   >  1:17466760/1‑35 (MQ=255)
                                 cGTGTTTATTTTTCAGTTCAAAGCGTGGTGATAcc   >  1:11642246/1‑35 (MQ=255)
                                 cGTGTTTATTTTTCAGTTCAAAGCGTGGTGATAcc   <  1:3352755/35‑1 (MQ=255)
                                 cGTGTTTATTTTTCAGTTCAAAGCGTGGTGATAcc   >  1:11420645/1‑35 (MQ=255)
                                  gtgtTTATTTTTCAGTTCAAAGCGTGGTGATACCa  <  1:15488457/35‑1 (MQ=255)
                                  gataatcgaaccttcaaccatgatatttgccgccg  >  1:9539325‑M1/1‑1 (MQ=255)
                                  |                                  
TTCAATCGCCCTTTTTTACTTTGTTTTATTAACCGTGTTTATTTTTCAGTTCAAAGCGTGGTGATACCA  >  REL606/699013‑699081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.