New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422594 =77 (0.750)21 (0.230) 4/42 NT 25.6% intergenic (‑281/+181) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter
?REL606 2573117 = 55 (0.610)intergenic (‑11/‑196) yfhM/sseA hypothetical protein/3‑mercaptopyruvate sulfurtransferase

Only 100 of 266 total aligned reads displayed.

TAACAAATAATTATCATTATGGTGACAATTGGGTGGGGGGGAAAATAAAGACTCATTAGCTGAATCGTG  >  REL606/422560‑422628
                                  |                                  
cgccgcgcggacccgccagggttttgtgagttgtg                                    <  1:19826000‑M1/4‑1 (MQ=255)
cgccgcgcggacccgccagggttttgtgagtggtg                                    >  1:9446786‑M1/32‑35 (MQ=255)
cgccgcgcggacccgccagggttttgtgagtggtg                                    >  1:3423178‑M1/32‑35 (MQ=255)
cgccgcgcggacccgccagggttttgtgagtggtg                                    <  1:17214636‑M1/4‑1 (MQ=255)
aattattcgacgttgctaacgggccattgtggcag                                    >  1:2893837‑M1/35‑35 (MQ=255)
aattattcgacgttgctaacgggccattgtggcag                                    >  1:225289‑M1/35‑35 (MQ=255)
aattattcgacgttgctaacgggccattgtggcag                                    >  1:5218254‑M1/35‑35 (MQ=255)
 gggaacagccagcagaccaccggcgagagcGGTgg                                   <  1:16657015‑M1/5‑1 (MQ=255)
 gggaacagccagcagaccaccggcgagagcGGTgg                                   <  1:15688254‑M1/5‑1 (MQ=255)
 gggaacagccagcagaccaccggcgagagcGGTgg                                   <  1:6219819‑M1/5‑1 (MQ=255)
 gccgcgcggacccgccagggttttgtgagtggtgg                                   <  1:5513818‑M1/5‑1 (MQ=255)
 attattcgacgttgctaacgggccattgtggcagg                                   <  1:3242126‑M1/2‑1 (MQ=255)
 attattcgacgttgctaacgggccattgtggcagg                                   >  1:20172555‑M1/34‑35 (MQ=255)
 attattcgacgttgctaacgggccattgtggcagg                                   >  1:627511‑M1/34‑35 (MQ=255)
 attattcgacgttgctaacgggccattgtggcagg                                   <  1:18247369‑M1/2‑1 (MQ=255)
 accgaccggactgtaagattacatcggctgggggg                                   <  1:16229267‑M1/2‑1 (MQ=255)
 accgaccggactgggagattacatcggctgggggg                                   <  1:19098206‑M1/2‑1 (MQ=255)
 aaCAAATAATTATCATTATGGTGACAATtgggtgg                                   <  1:18497296/35‑1 (MQ=255)
 aaCAAATAATTATCATTATGGTGACAATtgggtgg                                   <  1:18646265/35‑1 (MQ=255)
 aaCAAATAATTATCATTATGGTGACAATtgggtgg                                   <  1:5857928/35‑1 (MQ=255)
  ttattcgacgttgctaacgggccattgtggcgggg                                  <  1:9242758‑M1/3‑1 (MQ=255)
  ttattcgacgttgctaacgggccattgtggcaggg                                  <  1:7852538‑M1/3‑1 (MQ=255)
  ttattcgacgttgctaacgggccattgtggcaggg                                  <  1:10997674‑M1/3‑1 (MQ=255)
  ttattcgacgttgctaacgggccattgtggcaggg                                  <  1:9400693‑M1/3‑1 (MQ=255)
  ccgaccggactggaagattacatcggctgggtggg                                  <  1:18972094‑M1/3‑1 (MQ=255)
  aCAAATAATTATCATTATGGTGACAATtgggtggg                                  >  1:1212505/1‑35 (MQ=255)
  aCAAATAATTATCATTATGGTGACAATtgggtggg                                  <  1:11431386/35‑1 (MQ=255)
   gaacagccagcagaccaccggcgagagcGGTgggg                                 <  1:3698596‑M1/7‑1 (MQ=255)
   cgaccggactggaagattacatcggctgggggggg                                 <  1:7411329‑M1/4‑1 (MQ=255)
   cgaccggactggaagattacatcggctgggggggg                                 <  1:16872806‑M1/4‑1 (MQ=255)
    gaccggactggaagattacatcggctggggggggg                                <  1:5169051‑M1/5‑1 (MQ=255)
    gaccggactggaagattacatcggctggggggggg                                <  1:10077958‑M1/5‑1 (MQ=255)
    gaccggactggaagattacatcggctggggggggg                                <  1:13580606‑M1/5‑1 (MQ=255)
    aaaTAATTATCATTATGGTGACAATTGGGTggggg                                >  1:2604039/1‑35 (MQ=255)
    aaaTAATTATCATTATGGTGACAATTGGGTggggg                                <  1:11880185/35‑1 (MQ=255)
    aaaTAATTATCATTATGGTGACAATTGGGTggggg                                <  1:3783352/35‑1 (MQ=255)
     cgcggacccgccagggttttgtgagtGGTgggggg                               <  1:20111477‑M1/9‑1 (MQ=255)
     accggactggaagattacatcggctgggggggggg                               <  1:4258475‑M1/6‑1 (MQ=255)
     acagccagcagaccaccggcgagagcGGTgggggg                               <  1:5729844‑M1/9‑1 (MQ=255)
     acagccagcagaccaccggcgagagcGGTgggggg                               <  1:6998721‑M1/9‑1 (MQ=255)
      tcgacgttgctaacgggccattgtggcaggggggg                              <  1:13066548‑M1/7‑1 (MQ=255)
      tcgacgttgctaacgggccattgtggcagggggga                              <  1:4353793‑M1/7‑2 (MQ=255)
      gcggacccgccagggttttgtgagtGGTggggggg                              <  1:15860569‑M1/10‑1 (MQ=255)
      gcggacccgccagggttttgtgagtGGTggggggg                              <  1:1740012‑M1/10‑1 (MQ=255)
      gcggacccgccagggttttgtgagtGGTggggggg                              <  1:8810253‑M1/10‑1 (MQ=255)
      gcggacccgccagggttttgtgagtGGGggggggg                              <  1:4175635‑M1/10‑1 (MQ=255)
      cagccagcagaccaccggcgagcgcGGtggggggc                              <  1:11250385‑M1/10‑2 (MQ=255)
      ataatTATCATTATGGTGACAATTGGGTggggggg                              <  1:8555200/35‑1 (MQ=255)
        ggactggaagattacatcggctggggGGGGGGGaa                            <  1:11784737‑M1/9‑1 (MQ=255)
        gacgttgctaacgggcccttgtggcaGGGGGGGaa                            <  1:17686798‑M1/9‑1 (MQ=255)
        aatTATCATTATGGTGACAATTGGGTGGGGGGGaa                            <  1:2985585/35‑1 (MQ=255)
         gactggaagattacatcggctggggGGGGGGGaaa                           <  1:18016465‑M1/10‑1 (MQ=255)
         gactggaagattacatcggctggggGGGGGGGaaa                           <  1:6881235‑M1/10‑1 (MQ=255)
         gacccgccagggttttgtgagtGGTGGGGGggaga                           <  1:12340464‑M1/13‑3 (MQ=255)
         atTATCATTATGGTGACAATTGGGTGGGGGGGaaa                           <  1:11534059/35‑1 (MQ=255)
         atTATCATTATGGTGACAATTGGGTGGGGGGGaaa                           >  1:5196481/1‑35 (MQ=255)
         acgttgctaacgggccattgtggcaGGGGGGGaaa                           <  1:8911054‑M1/10‑1 (MQ=255)
         acgttgctaacgggccattgtggcaGGGGGGGaaa                           <  1:14088975‑M1/10‑1 (MQ=255)
          ttATCATTATGGTGACAATTGGGTGGGGGGGaaaa                          <  1:7476366/35‑1 (MQ=255)
          ttATCATTATGGTGACAATTGGGTGGGGGGGaaaa                          <  1:9855631/35‑1 (MQ=255)
          ttATCATTATGGTGACAATTGGGTGGGGGGGaaaa                          >  1:19709081/1‑35 (MQ=255)
          ttATCATTATGGTGACAATTGGGTGGGGGGGaaaa                          >  1:11489363/1‑35 (MQ=255)
          gactccggttccgtagcgggGGGAGGGGGGGaaaa                          <  1:6554989‑M1/15‑1 (MQ=255)
          cagcagaccaccggcgagagcGGTGGGGGGGaaaa                          <  1:15597821‑M1/14‑1 (MQ=255)
          actggaagattacatcggctggggGGGGGGgaaac                          <  1:18464002‑M1/11‑2 (MQ=255)
          actggaagattacatcggctggggGGGGGGGaaaa                          <  1:7743100‑M1/11‑1 (MQ=255)
          acccgccagggttttgtgagtGGTGGGGGGGgaaa                          <  1:16972737‑M1/14‑1 (MQ=255)
          acccgccagggttttgtgagtGGTGGGGGGGaaaa                          <  1:3172636‑M1/14‑1 (MQ=255)
           gttgctaacgggccattgtggcaGGGGGGgaaaaa                         <  1:17456784‑M1/12‑2 (MQ=255)
           gttgctaacgggccattgtggcaGGGGGGaaaaaa                         <  1:16331051‑M1/12‑2 (MQ=255)
           ctggaagattacatcggctggggGGGGGGGAAAAt                         <  1:2348719‑M1/12‑1 (MQ=255)
           ctggaagattacatcggctggggGGGGGGGAAAAt                         <  1:17894094‑M1/12‑1 (MQ=255)
           agcagaccaccggcgagagcGGTGGGGGGgaaaaa                         <  1:3051421‑M1/15‑2 (MQ=255)
            tggaagattacatcggctggggGGGGGAGAAAatt                        <  1:13785931‑M1/13‑2 (MQ=255)
             tCATTATGGTGACAATTGGGTGGGGGGGAAAATaa                       <  1:10255265/35‑1 (MQ=255)
             tCATTATGGTGACAATTGGGTGGGGGGGAAAATaa                       <  1:18750672/35‑1 (MQ=255)
              gctaacgggccattgtggcaGGGGGGGAaaatgaa                      <  1:13859741‑M1/15‑4 (MQ=255)
              cATTATGGTGACAATTGGGTGGGGGGGAAAATaaa                      <  1:3842277/35‑1 (MQ=255)
                 tATGGTGACAATTGGGTGGGGGGGAAAATAAAGAc                   >  1:18225750/1‑35 (MQ=255)
                  aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt                  <  1:683481/35‑1 (MQ=255)
                   tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc                 >  1:1272309/1‑35 (MQ=255)
                   tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc                 >  1:8574493/1‑35 (MQ=255)
                    ggTGACAATTGGGTGGGGGGGAAAATAAAGACTCa                >  1:11283749/1‑35 (MQ=255)
                    ggTGACAATTGGGTGGGGGGGAAAATAAAGACTCa                >  1:2125930/1‑35 (MQ=255)
                       gACAATTGGGTGGGGGGGAAAATAAAGACTCATTa             <  1:13429395/35‑1 (MQ=255)
                        aCAATTGGGTGGGGGGGAAAATAAAGACTCATTAg            <  1:18787402/35‑1 (MQ=255)
                         cAATTGGGTGGGGGGGAAAATAAAGACTCATTAGc           <  1:4628242/35‑1 (MQ=255)
                             tgggtgggGGGGAAAATAAAGACTCATTAGCTGaa       <  1:7247099/35‑1 (MQ=255)
                              gggtgggGGGGAAAATAAAGACTCATTAGCTGAAt      >  1:12252054/1‑35 (MQ=255)
                              gggtgggGGGGAAAATAAAGACTCATTAGCTGAAt      >  1:16147184/1‑35 (MQ=255)
                               GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc     >  1:9026973‑M1/1‑35 (MQ=255)
                               GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc     >  1:10535549‑M1/1‑35 (MQ=255)
                               GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc     >  1:8085840‑M1/1‑35 (MQ=255)
                               GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc     >  1:13457696‑M1/1‑35 (MQ=255)
                               GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc     >  1:14703611‑M1/1‑35 (MQ=255)
                               GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc     <  1:15359976‑M1/35‑1 (MQ=255)
                               GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc     >  1:4748879‑M1/1‑35 (MQ=255)
                               GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc     >  1:4957172‑M1/1‑35 (MQ=255)
                                  GGGGGGGAAAATAAAGACTCATTAGCTGAATCgtg  >  1:14960083‑M1/1‑35 (MQ=255)
                                  GGGGGGGAAAATAAAGACTCATTAGCTGAATCgtg  <  1:10450871‑M1/35‑1 (MQ=255)
                                  |                                  
TAACAAATAATTATCATTATGGTGACAATTGGGTGGGGGGGAAAATAAAGACTCATTAGCTGAATCGTG  >  REL606/422560‑422628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.