New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 957480 =61 (0.590)11 (0.150) 3/34 NT 20.1% coding (960/1293 nt) serS seryl‑tRNA synthetase
?REL606 = 3467034 44 (0.600)coding (963/2319 nt) yhgF predicted transcriptional accessory protein

Only 100 of 125 total aligned reads displayed.

TTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATC  >  REL606/3467000‑3467068
                                  |                                  
ttGCCCGTAACCTGCACGATCTGCTGATGGCGGcc                                    <  1:9042997/35‑1 (MQ=255)
 tGCCCGTAACCTGCACGATCTGCTGATGGCGGCCc                                   >  1:2577508‑M2/1‑34 (MQ=255)
 tGCCCGTAACCTGCACGATCTGCTGATGGCGGCCc                                   >  1:13562236‑M2/1‑34 (MQ=255)
 tGCCCGTAACCTGCACGATCTGCTGATGGCGGCCc                                   >  1:16508302‑M2/1‑34 (MQ=255)
 tGCCCGTAACCTGCACGATCTGCTGATGGCGGCCc                                   >  1:6481313‑M2/1‑34 (MQ=255)
  gCCCGTAACCTGCACGATCTGCTGATGGCGGGCcc                                  <  1:4236281‑M2/35‑3 (MQ=255)
  gCCCGTAACCTGCACGATCTGCTGATGGCGGCCcc                                  >  1:9609551‑M2/1‑33 (MQ=255)
  gCCCGTAACCTGCACGATCTGCTGATGGCGGCCcc                                  >  1:6677603‑M2/1‑33 (MQ=255)
  gCCCGTAACCTGCACGATCTGCTGATGGCGGCCcc                                  <  1:13640429‑M2/35‑3 (MQ=255)
   cccGTAACCTGCACGATCTGCTGATGGCGGGCccc                                 <  1:15405036‑M2/35‑4 (MQ=255)
   cccGTAACCTGCACGATCTGCTGATGGCGGGCccc                                 <  1:10090166‑M2/35‑4 (MQ=255)
   cccGTAACCTGCACGATCTGCTGATGGCGGCCcct                                 >  1:19872111‑M2/1‑32 (MQ=255)
   cccGTAACCTGCACGATCTGCTGATGGCGGCCcct                                 >  1:16760381‑M2/1‑32 (MQ=255)
   cccGTAACCTGCACGATATGCTGATGGCGGCCcct                                 >  1:13031986‑M2/1‑32 (MQ=255)
    ccGTAACCTGCACGATCTGCTGATGGCGGCCcctg                                >  1:14336147‑M2/1‑31 (MQ=255)
    ccGTAACCTGCACGATCTGCTGATGGCGGCCcccg                                <  1:7678820‑M2/35‑5 (MQ=255)
    cagtaACCTGCACGATCTGCTGATGGCGGCCcctg                                >  1:14346288‑M2/3‑31 (MQ=255)
     cGTAACCTGCACGATCTGCTGATGGCGGGCCCCGc                               >  1:4923762/1‑35 (MQ=25)
     cGTAACCTGCACGATCTGCTGATGGCGGCCcctgc                               >  1:10571451‑M2/1‑30 (MQ=255)
      gTAACCTGCACGATCTGCTGATGGCGGCCcctgcc                              >  1:16572623‑M2/1‑29 (MQ=255)
       tAACCTGCACGATCTTCTGATGGCGGCCCCCGCCg                             >  1:11781502/1‑35 (MQ=37)
       tAACCTGCACGATCTGCTGATGGCGGCCcctgccg                             >  1:5656658‑M2/1‑28 (MQ=255)
        acccTGCACGATCTGCTGATGGCGGCCCCTGCCgg                            <  1:1244506/33‑1 (MQ=255)
        aaCCTGCACGATCTGCTGATGGCGGGCCCCCCCgg                            >  1:2230426/1‑35 (MQ=25)
        aaCCTGCACGATCTGCTGATGGCGGCCCCTGCCgg                            <  1:4907650/35‑1 (MQ=255)
        aaCCTGCACGATCTGATGATGGCGGCCCCTGCCgg                            <  1:17358494/35‑1 (MQ=255)
         aCCTGCACGATCTGCTGATGGCGGCCCCTGCCGGa                           <  1:10004588/35‑1 (MQ=255)
         aCCTGCACGATCTGCTGATGGCGGCCCCTGCCGGa                           <  1:11154521/35‑1 (MQ=255)
          ccTGCACGATCTGCTGATGGCGGGCCCCCCCgggc                          >  1:11949202/1‑33 (MQ=21)
          ccTGCACGATCTGCTGATGGCGGCGCCTGCCGGAc                          <  1:20024088/35‑1 (MQ=255)
           cTGCACGATCTGCTGATGGCGGGCCCCGCCgggcc                         >  1:11190445/1‑32 (MQ=25)
           cTGCACGATCTGCTGATGGCGGGCCCCGCCGGGCt                         >  1:12354948/1‑35 (MQ=25)
           cTGCACGATCTGCTGATGGCGGCCCCTGCCGGACt                         <  1:10854341/35‑1 (MQ=255)
           cTGCACGATCTGCTGATGGCGGCCCCTGCCGGACt                         <  1:460306/35‑1 (MQ=255)
           cTGCACGATCTGCTGATGGCGGCCCCTGCCGGACt                         <  1:17119513/35‑1 (MQ=255)
              cACGTTCTGCTGATGGCGGCCCCTGCCGGACTGCg                      <  1:2829672/35‑1 (MQ=255)
               aCGATCTGCTGATGGCGGGCCCCCCCGGACCGCgg                     >  1:7372884/1‑34 (MQ=16)
                cGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTg                    <  1:6871948/35‑1 (MQ=255)
                cGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTg                    <  1:3051191/35‑1 (MQ=255)
                cGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTg                    <  1:7510640/35‑1 (MQ=255)
                cGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTg                    <  1:15879188/35‑1 (MQ=255)
                cGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTg                    <  1:11326866/35‑1 (MQ=255)
                cGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTg                    <  1:6074591/35‑1 (MQ=255)
                cGATCTGCTGAGGGCGGCCCCTGCCGGACTGCGTg                    <  1:3177649/35‑1 (MQ=255)
                 gttCTCCTGATGGCGGCCCCTGCCGGACTGCGTGc                   <  1:18195406/33‑1 (MQ=38)
                 gATCTGCTGATGGCGGGCCCTGCCGGCACGCGTGc                   >  1:672276/1‑35 (MQ=16)
                 gATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGc                   <  1:7880594/35‑1 (MQ=255)
                  aTCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCa                  <  1:13382494/35‑1 (MQ=255)
                  aTCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCa                  <  1:16021435/35‑1 (MQ=255)
                  aTCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCa                  <  1:20297772/35‑1 (MQ=255)
                  aTCTGCGGATGGCGGCCCCTGCCGGACTGCGTGCa                  <  1:10849890/35‑1 (MQ=255)
                   tCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCaa                 <  1:18028520/35‑1 (MQ=255)
                   tCTGCTGAGGGCGGCCCCTGCCGGACTGCGTGCaa                 <  1:17839232/35‑1 (MQ=255)
                    ctgctgATGGCGGCCCCTGCCGGACTGCGTGCAAc                <  1:9159039/35‑1 (MQ=255)
                    ctgcggATGGCGGCCCCTGCCGGACTGCGTGCAAc                <  1:9024268/35‑1 (MQ=255)
                    ctgcggATGGCGGCCCCTGCCGGACTGCGTGCAAc                <  1:10851616/35‑1 (MQ=255)
                    ctgcggATGGCGGCCCCTGCCGGACTGCGTGCAAc                <  1:20008644/35‑1 (MQ=255)
                    cggctgATGGCGGCCCCTGCCGGACTGCGTGCAAc                <  1:7425459/33‑1 (MQ=255)
                    cgcctgAGGGCGCCCCCTGCCGGACTGCGTGCAAc                <  1:8664957/32‑1 (MQ=25)
                     tgctgATGGCGGCCCCTGCCGGACTGCGTGCAACg               <  1:9768542/35‑1 (MQ=255)
                     tgcggATGGCGGCCCCTGCCGGACTGCGTGCAACg               <  1:3928668/35‑1 (MQ=255)
                     ggctgAGGGCGGCCCCTGCCGGACTGCGTGCAACg               <  1:6467160/34‑1 (MQ=255)
                      gctgATGGCGGCCCCTGCCGGACTGCGTGCAACGa              <  1:15791600/35‑1 (MQ=255)
                       ctgATGGCGGCCCCTGCCGGACTGCGTGCAACGAt             <  1:11664156/35‑1 (MQ=255)
                       ctgATGGCGGCCCCTGCAGGACTGCGTGCAACGAt             <  1:7966072/35‑1 (MQ=255)
                        tgATGGCGGCCCCTGCCGGACTGCGTGCAACGATg            <  1:3683485/35‑1 (MQ=255)
                         gATGGCGGCCCCTGCCGGACTGCGTGCAACGATgg           <  1:5021371/35‑1 (MQ=255)
                         aaTGGCGCCCCCTGCCGGACTGCGTGCAACGATgg           <  1:9149211/34‑1 (MQ=255)
                          gtgGGGGCCcctgccgtaccgtaaaatcatccttt          >  1:1087860‑M2/2‑9 (MQ=255)
                           tGGCGGCCcctgccgtaccgtaaaatcatcctttg         >  1:574800‑M2/1‑8 (MQ=255)
                           tGGCGGCCcctgccgtaccgtaaaatcatcctttg         >  1:808803‑M2/1‑8 (MQ=255)
                           tGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGc         <  1:11365329/35‑1 (MQ=255)
                            tgcggcccctgccgtaccgtaaaatcatcctttgc        >  1:5943146‑M2/2‑7 (MQ=255)
                            ggcggcCcctgccgtaccgtaaaatcatcctttgc        >  1:5596180‑M2/1‑7 (MQ=255)
                            ggcggcCCCTGCCGGACTGCGTGCAACGATGGGcc        <  1:15425666/35‑1 (MQ=255)
                            ggcggcCCCTGCCGGACTGCGTGCAACGATGGGcc        <  1:10542061/35‑1 (MQ=255)
                            gccggcCCCTGCCGGACTGCGTGCAACGATGGGcc        <  1:15757977/33‑1 (MQ=255)
                             gctgcCcctgccgtaccgtaaaatcatcctttgca       >  1:5439144‑M2/1‑6 (MQ=255)
                             gcggcCcctgccgtaccgtaaaatcatcctttgca       >  1:11646770‑M2/1‑6 (MQ=255)
                             gcggcCCATGCCGGACTGCGTGCAACGATGGGCCt       <  1:19106166/35‑1 (MQ=255)
                              gggcCCCTGCCGGACTGCGTGCAACGATGGGCCTc      <  1:14604883/34‑1 (MQ=255)
                              cggcCCCTGCCGGACTGCGTGCAACGATGGGCCTc      <  1:983739/35‑1 (MQ=255)
                              ccgcccctgccgtaccgtaaaatcatcctttgcac      >  1:19889566‑M2/3‑5 (MQ=255)
                               ggcCcctgccgtaccgtaaaataatcctttgcact     >  1:2268640‑M2/1‑4 (MQ=255)
                               ggcCCCTGCCGGACTGCGTGCAACGATGGTCCTCg     >  1:18142809/1‑35 (MQ=255)
                               ggcCCCTGCCGGACTGCGTGCAACGATGGGCCTCg     >  1:9751745/1‑35 (MQ=255)
                               ggcCCCTGCCGGACTGCGTGCAACGATGGGCCTCg     >  1:2557442/1‑35 (MQ=255)
                               ggcCCCTGCCGGACTGCGTGCAACGATGGGCCTCg     >  1:19026089/1‑35 (MQ=255)
                               ggcCCCTGCCGGACTGCGTGCAACGATGGGCCTCg     >  1:6405577/1‑35 (MQ=255)
                               ggcCCCTGCCGGACTGCGTGCAACGATGGGCCCCg     >  1:20344906/1‑35 (MQ=255)
                                ggccctgccgtaccgtaaaatcatcctttgcactg    >  1:4567363‑M2/3‑3 (MQ=255)
                                gcCcctgccgtaccgtaaaatcatcctttgcactg    >  1:14960093‑M2/1‑3 (MQ=255)
                                gcCcctgccgtaccgtaaaatcatactttgcactg    >  1:2389180‑M2/1‑3 (MQ=255)
                                gcCCCTGCCGGACTGCGTGCAACGATGGGCCTCGa    >  1:4960784/1‑35 (MQ=255)
                                gcCCCTGCCGGACTGCGTGCAACGATGGGCCTCGa    >  1:17694143/1‑35 (MQ=255)
                                 gccctgccgtacagtaaaatcatcctttgcactgg   >  1:17430073‑M2/2‑2 (MQ=255)
                                 cccctgccgtaccgtaaaatcatcctttgcactgg   >  1:18929419‑M2/1‑2 (MQ=255)
                                  ccctgccgtaccgtaaaatcatcctttgcactggc  >  1:3469077‑M2/1‑1 (MQ=255)
                                  cccTGCCGGACTGCGTGCAACGATGGGCCTCGATc  <  1:1939368/35‑1 (MQ=255)
                                  cccTGCCGGACTGCGTGCAACGATGGGCCTCGATc  <  1:16754963/35‑1 (MQ=255)
                                  |                                  
TTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATC  >  REL606/3467000‑3467068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.