New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 368616056 (0.540)23 (0.230) 5/46 NT 30.0% coding (402/741 nt) yiaT hypothetical protein
?REL606 = 4467594 NA (NA)intergenic (‑281/+73) holC/pepA DNA polymerase III subunit chi/leucyl aminopeptidase

Only 100 of 624 total aligned reads displayed.

TGTGGAATACCGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTCCGCAGCCGCAGAGGCTT  >  REL606/3686126‑3686194
                                  |                                  
tgtgGAATACCGATAGCTCCCCCACCCAGCCGTTG                                    >  1:6026760‑M1/1‑35 (MQ=255)
 gtgGAATACCGATAGCTCCCCCACCCAGCCGTTGa                                   >  1:11269094‑M1/1‑34 (MQ=255)
          cGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCa                          >  1:4681629/1‑35 (MQ=255)
          cGATAGCCCCCCCCCCCAGCCGTTGCTGTTATCCa                          <  1:7359730/35‑1 (MQ=25)
           gATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAg                         >  1:349134/1‑35 (MQ=255)
           gATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAg                         >  1:8152067/1‑35 (MQ=255)
                cTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGt                    >  1:6120009/1‑35 (MQ=255)
                 tCCCCCCCCCAGCCGTTGCTGTTATCCAGAACGTc                   <  1:6766716/35‑1 (MQ=255)
                 tCCCCCCCCCAGCCGTTGCTGTTATCCAGAACGTc                   <  1:12063569/35‑1 (MQ=255)
                 tCCCCCCCCCAGCCGTTGCTGTTATCCAGAACGTc                   <  1:12197388/35‑1 (MQ=255)
                 cccccccCCCAGCCGTTGtaggcctgataagacgc                   <  1:17995873‑M1/34‑18 (MQ=255)
                  cccccCCCCAGCCGTTGtaggcctgataagacgcg                  <  1:4446339‑M1/35‑19 (MQ=255)
                  cccccCCCCAGCCGTTGtaggcctgataagacgcg                  <  1:1655315‑M1/35‑19 (MQ=255)
                  cccccCCCCAGCCGTTGCctgatgcgacgctgtgc                  >  1:581458‑M2/1‑18 (MQ=255)
                  cccccCCCCAGCCGTTGCctgatgcgacgcgtaat                  >  1:1003579‑M2/1‑18 (MQ=255)
                   ccccCCCCAGCCGTTGgcgatccggttcggccacg                 <  1:12422903‑M1/35‑20 (MQ=255)
                   ccccCCCCAGCCGTTGgcgatccggttcggccacg                 <  1:4292959‑M1/35‑20 (MQ=255)
                   ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg                 >  1:311618‑M2/1‑17 (MQ=255)
                   ccccACCCAGCCGTTGCTGTTATCCAGAACGTccg                 >  1:18183785/1‑35 (MQ=255)
                    cccccccaGCCGTTGCctgatgcgacgctgtgcgt                >  1:16414833‑M2/1‑16 (MQ=255)
                    cccccccaGCCGTTGCctgatgcgacgcgtaatgc                >  1:1520610‑M2/1‑16 (MQ=255)
                     ccccccagccGTTGtaggcctgataagacgcgcaa               <  1:830383‑M1/32‑22 (MQ=255)
                      cccccagcCGTTGCctgatgcgacgctgtgcgtct              >  1:7458274‑M2/3‑14 (MQ=255)
                      cccccagcCGTTGCctgatgcgacgcgtaatgcgt              >  1:15926536‑M2/3‑14 (MQ=255)
                       cgccagcCGTTGCctgatgcgacgctgtgcgtctt             >  1:17140220‑M2/3‑13 (MQ=255)
                       ccccagCCGTTGgcgatccggttcggccacggaat             <  1:15350068‑M1/34‑24 (MQ=255)
                       ccccagCCGTTGgagatccggttcggccacggaat             <  1:20506821‑M1/34‑24 (MQ=255)
                       ccccagCCGTTGCctgatgcgacgcgtaatgcgtc             >  1:3352112‑M2/2‑13 (MQ=255)
                       ccccagCCGTTGCctgatgcgacgcgtaatgcgtc             >  1:16024353‑M2/2‑13 (MQ=255)
                       ccccagCCGTTGCctgatgcgacgcgtaatgcgtc             >  1:11479432‑M2/2‑13 (MQ=255)
                       ccccagCCGTTGCctgatgcgacgcgtaatgcgtc             >  1:14208247‑M2/2‑13 (MQ=255)
                        cccaGCCGTTGtaggcctgataagacgcgcaagcg            <  1:9533212‑M1/35‑25 (MQ=255)
                        cccaGCCGTTGCctgatgcgacgcgtaatgcgtct            >  1:8022352‑M2/1‑12 (MQ=255)
                        cccaGCCGTTGCctgatgcgacgcgtaatgcgtct            >  1:16673115‑M2/1‑12 (MQ=255)
                        cccaGCCGTTGCctgatgcgacgcgtaatgcgtct            >  1:17827781‑M2/1‑12 (MQ=255)
                         ccaGCCGTTGCctgatgcgacgctgtgcgtcttat           >  1:2444031‑M2/1‑11 (MQ=255)
                          caGCCGTTGgcgatccggttcggccacggaataag          <  1:10503395‑M1/35‑27 (MQ=255)
                          caGCCGTTGCctgatgcgacgcgtaatgcgtctta          >  1:17395996‑M2/1‑10 (MQ=255)
                           aGCCGTTGCctgatgcgacgctgtgcgtcttatca         >  1:1343445‑M2/1‑9 (MQ=255)
                           aGCCGTTGCctgatgcgacgcgtaatgcgtcttat         <  1:5421568‑M2/35‑27 (MQ=255)
                           aGCCGTTGCctgatgcgacgcgtaatgcgtcttat         >  1:2950372‑M2/1‑9 (MQ=255)
                           aGCCGTTGCctgatgcgacgcgtaatgcgtcttat         >  1:6668951‑M2/1‑9 (MQ=255)
                            gCCGTTGtaggcctgataagacgcgcaagcgtcgc        <  1:4011322‑M1/35‑29 (MQ=255)
                            gCCGTTGgcgatccggttcggccacggaataagca        >  1:18049984‑M1/1‑7 (MQ=255)
                            gCCGTTGgcgatccggttcggccacggaataagca        >  1:13290266‑M1/1‑7 (MQ=255)
                            gCCGTTGCctgatgcgacgcgtaatgcgtcttatc        >  1:845169‑M2/1‑8 (MQ=255)
                             ccGTTGtaggcctgataagacgcgcaagcgtcgca       <  1:10344514‑M1/35‑30 (MQ=255)
                             ccGTTGtaggcctgataagacgcgcaagcgtcgca       <  1:18298466‑M1/35‑30 (MQ=255)
                             ccGTTGgcgatccggttcggccacggaataagcac       <  1:3788909‑M1/35‑30 (MQ=255)
                             ccGTTGCctgatgcgacgctgtgcttcttatcagg       <  1:5652416‑M2/35‑29 (MQ=255)
                             ccGTTGCctgatgcgacgctgtgcgtcttatcagg       >  1:13759564‑M2/1‑7 (MQ=255)
                             ccGTTGCctgatgcgacgctgtgcgtcttatcagg       >  1:4525432‑M2/1‑7 (MQ=255)
                             ccGTTGCctgatgcgacgctgtgcgtcttatcagg       <  1:15676274‑M2/35‑29 (MQ=255)
                             ccGTTGCctgatgcgacgctgtgcgtcttatcagg       >  1:11944117‑M2/1‑7 (MQ=255)
                             ccGTTGCctgatgcgacgctgtgcgtcttatcagg       >  1:2811677‑M2/1‑7 (MQ=255)
                             ccGTTGCctgatgcgacgcgtaatgcgtcttatca       <  1:643100‑M2/35‑29 (MQ=255)
                              cGTTGgcgatccggttcggccacggaataagcact      >  1:19943616‑M1/1‑5 (MQ=255)
                              cGTTGCctgatgcgacgctgtgcgtcttatcaggc      <  1:1300178‑M2/35‑30 (MQ=255)
                              cGTTGCctgatgcgacgctgtgcgtcttatcaggc      <  1:19054649‑M2/35‑30 (MQ=255)
                               gTTGtaggcctgataagacgcgcaagcgtcgcatc     <  1:13690001‑M1/35‑32 (MQ=255)
                               gTTGCctgatgcgacgcgtaatgcgtcttatcagg     <  1:14472761‑M2/35‑31 (MQ=255)
                               gTTGCctgatgcgacgcgtaatgcgtcttatcagg     >  1:11657467‑M2/1‑5 (MQ=255)
                                ttGtaggcctgataagacgcgcaagcgtcgcatca    >  1:17594202‑M1/1‑3 (MQ=255)
                                ttGtaggcctgataagacgcgcaagcgtcgcatca    <  1:9244698‑M1/35‑33 (MQ=255)
                                ttGtaggcctgataagacgcgcaagcggcgcatca    >  1:20089936‑M1/1‑3 (MQ=255)
                                ttGgcgatccggttcggccacggaataagcacttt    <  1:8665287‑M1/35‑33 (MQ=255)
                                ttGgcgatccggttaggccacggaataagcacttt    <  1:10268056‑M1/35‑33 (MQ=255)
                                ttGCctgatgcgacgctgtgcgtcttatcaggcct    >  1:20426807‑M2/1‑4 (MQ=255)
                                ttGCctgatgcgacgcgtaatgcgtcttatcaggc    <  1:19377031‑M2/35‑32 (MQ=255)
                                ttGCctgatgcgacgcgtaatgcgtcttatcaggc    >  1:9384337‑M2/1‑4 (MQ=255)
                                ttGCctgatgcgacgcgtaatgcgtcttatcaggc    >  1:2629058‑M2/1‑4 (MQ=255)
                                ttGCctgatgcgacgcgtaatgcgtcttatcaggc    <  1:15568983‑M2/35‑32 (MQ=255)
                                ttGCctgatgcgacgcgtaatgcgtcttatcaggc    >  1:2163620‑M2/1‑4 (MQ=255)
                                ttGCctgatgcgacgcgtaatgcgtcttatcaggc    >  1:14789082‑M2/1‑4 (MQ=255)
                                ttGCctgatgcgacgcgtaatgcgtcttatcaggc    >  1:14687228‑M2/1‑4 (MQ=255)
                                 tGtaggcctgataagacgcgcaagcgtcgcatcag   <  1:10657531‑M1/35‑34 (MQ=255)
                                 tGtaggcctgataagacgcgcaagcgtcgcatcag   <  1:7654976‑M1/35‑34 (MQ=255)
                                 tGtaggcctgataagacgcgcaagcgtcgcatcag   <  1:6878837‑M1/35‑34 (MQ=255)
                                 tGtaggcctgataagacgcgcaagcgtcgcatcag   >  1:10106480‑M1/1‑2 (MQ=255)
                                 tGtaggcctgataagacgcgcaagcgtcgcatcag   >  1:2338853‑M1/1‑2 (MQ=255)
                                 tGtaggcctgataagacgcgcaagcgtcgcatcag   >  1:19744593‑M1/1‑2 (MQ=255)
                                 tGtaggcctgataagacgcgcaagcgtcgcatcag   >  1:16786285‑M1/1‑2 (MQ=255)
                                 tGtaggcctgataagacgcgcaagcgtcgcatcag   <  1:16242097‑M1/35‑34 (MQ=255)
                                 tGtaggcctgataagacgcgcaagcgtcgcatcag   <  1:14577822‑M1/35‑34 (MQ=255)
                                 tGgcgatccggttcggccacggaataagcacttta   <  1:4866715‑M1/35‑34 (MQ=255)
                                 tGgcgatccggttcggccacggaataagcacttta   >  1:966074‑M1/1‑2 (MQ=255)
                                 tGCctgatgcgacgcgtaatgcgtcttatcaggcc   <  1:7284933‑M2/35‑33 (MQ=255)
                                 tGCctgatgcgacgcgtaatgcgtcttatcaggcc   <  1:11833382‑M2/35‑33 (MQ=255)
                                 tGCctgatgcgacgcgtaatgcgtcttatcaggcc   <  1:14932826‑M2/35‑33 (MQ=255)
                                 tGCctgatgcgacgcgtaatgcgtcttatcaggcc   <  1:14018855‑M2/35‑33 (MQ=255)
                                  gtaggcctgataagacgcgcaagcgtcgcatcagg  <  1:9854734‑M1/35‑35 (MQ=255)
                                  gtaggcctgataagacgcgcaagcgtcgcatcagg  <  1:8894330‑M1/35‑35 (MQ=255)
                                  gtaggcctgataagacgcgcaagcgtcgcatcagg  <  1:18909176‑M1/35‑35 (MQ=255)
                                  gtaggcctgataagacgcgcaagcgtcgcatcagg  >  1:18735317‑M1/1‑1 (MQ=255)
                                  gtaggcctgataagacgcgcaagcgtcgcatcagg  <  1:5010139‑M1/35‑35 (MQ=255)
                                  gtaggcctgataagacgcgcaagcgtcgcatcagg  >  1:12615022‑M1/1‑1 (MQ=255)
                                  gCctgatgcgacgctgtgcgtcttatcaggcctac  <  1:10893835‑M2/35‑34 (MQ=255)
                                  gCctgatgcgacgctgtgcgtcttatcaggcctac  <  1:7076129‑M2/35‑34 (MQ=255)
                                  gCctgatgcgacgcgtaatgcgtcttatcaggcct  <  1:16901007‑M2/35‑34 (MQ=255)
                                  gCctgatgcgacgcgtaatgcgtcttatcaggcct  >  1:1922724‑M2/1‑2 (MQ=255)
                                  |                                  
TGTGGAATACCGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTCCGCAGCCGCAGAGGCTT  >  REL606/3686126‑3686194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.