New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2682742 =NA (NA)39 (0.540) 6/34 NT 45.9% noncoding (135/768 nt) IS1 repeat region
?REL606 2703961 = 65 (0.630)coding (794/1185 nt) ygaX predicted transporter

Only 100 of 1086 total aligned reads displayed.

GGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATCG  >  REL606/2703927‑2703995
                                  |                                  
gttttacggcattgagagcagagatagcgctgatg                                    >  1:8705835‑M2/35‑35 (MQ=255)
gttttacggcagtgagagcagagatagcgctgatg                                    <  1:18889816‑M2/1‑1 (MQ=255)
gttttacggcagtgagagcagagatagcgctgatg                                    <  1:15272168‑M2/1‑1 (MQ=255)
gttttacggcagtgagagcagagatagcgctgatg                                    <  1:15127362‑M2/1‑1 (MQ=255)
gttttacggcagtgagagcagagatagcgctgatg                                    <  1:2921166‑M2/1‑1 (MQ=255)
 ttttacggcagtgagagcagagatagcgctgatGt                                   <  1:9591639‑M2/2‑1 (MQ=255)
 ttttacggcagtgagagcagagatagcgctgatGt                                   <  1:7945183‑M2/2‑1 (MQ=255)
 ttttacggcagtgagagcagagatagcgctgatGt                                   <  1:20092148‑M2/2‑1 (MQ=255)
 ttttacggcagtgagagcagagatagcgctgatGt                                   <  1:12166168‑M2/2‑1 (MQ=255)
  tttactgcagtgagagcagagatagcgctgatGTc                                  >  1:18450806‑M2/33‑35 (MQ=255)
  tttacggcagtgagagcagagatagcgctgatGTc                                  <  1:2611660‑M2/3‑1 (MQ=255)
  tttacggcagtgagagcagagatagcgctgatGTc                                  <  1:2747920‑M2/3‑1 (MQ=255)
  tttacggcagtgagagcagagatagcgctgatGTc                                  <  1:3274211‑M2/3‑1 (MQ=255)
  tttacggcagtgagagcagagatagcgctgatGTc                                  <  1:3755399‑M2/3‑1 (MQ=255)
  tttacggcagtgagagcagagatagcgctgatGTc                                  <  1:11034551‑M2/3‑1 (MQ=255)
  tttacggcagtgagagcagagatagcgctgatGTc                                  <  1:11194814‑M2/3‑1 (MQ=255)
  tttacggcagtgagagcagagatagcgctgatGTc                                  <  1:6485757‑M2/3‑1 (MQ=255)
  nttacgncagtgagagcagagatagcgctgatGTc                                  <  1:689956‑M2/3‑1 (MQ=255)
  aCTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTc                                  <  1:8558290/35‑1 (MQ=255)
  aCTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTc                                  <  1:12644469/35‑1 (MQ=255)
   ttacggcagtgagagcagagatagcgctgatGTcc                                 <  1:17634437‑M2/4‑1 (MQ=255)
   ttacggcagtgagagcagagatagcgctgatGTcc                                 <  1:19298678‑M2/4‑1 (MQ=255)
   ttacggcagtgagagcagagatagcgctgatGTcc                                 <  1:20380406‑M2/4‑1 (MQ=255)
   ttacggcagtgagagcagagatagcgctgatGTcc                                 <  1:20539451‑M2/4‑1 (MQ=255)
   ttacggcagtgagagcagagatagcgctgatGTcc                                 <  1:2417682‑M2/4‑1 (MQ=255)
   ttacggcagtgagagcagagatagcgctgatGTcc                                 <  1:6767723‑M2/4‑1 (MQ=255)
   ttacggcagtgagagcagagatagcgctgatGTcc                                 <  1:6149368‑M2/4‑1 (MQ=255)
    tacggcagtgagagcagagatagcgctgatGTCcg                                <  1:5621728‑M2/5‑1 (MQ=255)
    tacggcagtgagagcagagatagcgctgatGTCcg                                <  1:13013828‑M2/5‑1 (MQ=255)
    tacggcagtgagagcagagatagcgctgatGTCcg                                <  1:15635566‑M2/5‑1 (MQ=255)
    tacggcagtgagagcagagatagcgctgatGTCcg                                <  1:9364015‑M2/5‑1 (MQ=255)
    tacggcagtgagagcagagatagcgctgatGTCcg                                <  1:16261531‑M2/5‑1 (MQ=255)
    tacggcagtgagagcagagatagcgctgatGCCcg                                <  1:17823683‑M2/5‑1 (MQ=255)
    tacggaagtgagagcagagatagcgctgatGTCcg                                <  1:16357327‑M2/5‑1 (MQ=255)
     acggcagtgagagcagagatagcgctgatGTCcgg                               <  1:19753222‑M2/6‑1 (MQ=255)
     acggcagtgagagcagagatagcgctgatGTCcgg                               <  1:18176029‑M2/6‑1 (MQ=255)
     acggcagtgagagcagagatagcgctgatGTCcgg                               <  1:17969095‑M2/6‑1 (MQ=255)
     acggcagtgagagcagagatagcgctgatGTCcgg                               <  1:5452435‑M2/6‑1 (MQ=255)
     acggcagtgagagcagagatagcgctgatGTCcgg                               <  1:1003461‑M2/6‑1 (MQ=255)
     acggcagtgagagcagagatagcgctgatGTCcgg                               <  1:10373069‑M2/6‑1 (MQ=255)
     acggcagtgagagcagagatagcgctgatGTCcgg                               <  1:14775635‑M2/6‑1 (MQ=255)
      gCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCcggc                              <  1:3076030/35‑1 (MQ=255)
      cggcagtgagagcagagatagcgctgatGTCcggc                              <  1:13903228‑M2/7‑1 (MQ=255)
      cggcagtgagagcagagatagcgctgatGTCcggc                              <  1:16597372‑M2/7‑1 (MQ=255)
       ggcagtgagagcagagatagcgctgatGTTcggcg                             >  1:11618546‑M2/28‑35 (MQ=255)
       ggcagtgagagcagagatagcgctgatGTCcggcg                             <  1:13248656‑M2/8‑1 (MQ=255)
       ggcagtgagagcagagatagcgctgatGTCcggcg                             >  1:4579353‑M2/28‑35 (MQ=255)
       ggcagtgagagcagagatagcgctgatGTCcggcg                             >  1:19972296‑M2/28‑35 (MQ=255)
       ggcagtgagagcagagatagcgctgatGTCcggcg                             <  1:19071273‑M2/8‑1 (MQ=255)
       cGGGAGCTGCCGGAGCGTTGGGCGCTCGTCcggcg                             <  1:17188096/35‑1 (MQ=255)
       cGGGAGCTGCCGGAGCGTTGGGCGCTCGTCcggcg                             <  1:4411835/35‑1 (MQ=255)
        gcagtgagagcagagatagcgctgatGTCcggcgg                            >  1:3439392‑M2/27‑35 (MQ=255)
        gcagtgagagcagagatagcgctgatGTCcggcgg                            >  1:14934991‑M2/27‑35 (MQ=255)
        gcagtgagagcagagatagcgctgatGTCcggcgg                            >  1:19619535‑M2/27‑35 (MQ=255)
        gcagtgagagcagagatagcgctgatGTCcggcgg                            <  1:13453715‑M2/9‑1 (MQ=255)
        gcagtgagagcagagatagcgctgatGTCcggcgg                            <  1:8326816‑M2/9‑1 (MQ=255)
        gcagtgagagcagagatagcgctgatGTCcggcgg                            <  1:20211156‑M2/9‑1 (MQ=255)
        gcagtgagagcagagatagcgctgatGTCcggcgg                            <  1:4775532‑M2/9‑1 (MQ=255)
         cagtgagagcatagatagcgctgatGTCCggcggg                           >  1:14601880‑M2/26‑35 (MQ=255)
         cagtgagagcagagatagcgctgatGTCCggcggg                           >  1:4246495‑M2/26‑35 (MQ=255)
         cagtgagagcagagatagcgctgatGTCCggcggg                           >  1:919887‑M2/26‑35 (MQ=255)
         cagtgagagcagagatagcgctgatGTCCggcggg                           >  1:2270323‑M2/26‑35 (MQ=255)
         cagtgagagcagagatagcgctgatGTCCggcggg                           >  1:14459397‑M2/26‑35 (MQ=255)
         cagtgagagcagagatagcgctgatGTCCggcggg                           >  1:15821963‑M2/26‑35 (MQ=255)
         cagtgagagcagagatagcgctgatGTCCggcggg                           >  1:11788025‑M2/26‑35 (MQ=255)
         cactgagagcagagatagcgctgatGTCCggcggg                           >  1:12019460‑M2/26‑35 (MQ=255)
          attgagagcagagatagcgctgatGTCcggcgggg                          >  1:9847356‑M2/25‑34 (MQ=255)
          agtgagagcagagatagcgctgatGTCcggctggg                          >  1:17407505‑M2/25‑34 (MQ=255)
          agtgagagcagagatagcgctgatGTCcggcgggg                          >  1:16985008‑M2/25‑34 (MQ=255)
          agtgagagcagagatagcgctgatGTCcggcgggg                          >  1:17514046‑M2/25‑34 (MQ=255)
          agtgagagcagagatagcgctgatGTCcggcgggg                          >  1:16098189‑M2/25‑34 (MQ=255)
          agtgagagcagagatagcgctgatGTCcggcgggg                          >  1:13749514‑M2/25‑34 (MQ=255)
           gtgagagcagagatagcgctgatGTccggcggggg                         >  1:3918933‑M2/24‑33 (MQ=255)
           gtgagagcagagatagcgctgatGTccggcggggg                         >  1:14096554‑M2/24‑33 (MQ=255)
           gtgagagcagagatagcgctgatGTccggcggggg                         >  1:2112574‑M2/24‑33 (MQ=255)
           gtgagagcagagatagcgctgatGTccggcggggg                         >  1:12351505‑M2/24‑33 (MQ=255)
           gtgagagcagagatagcgctgatGTccggcggggc                         >  1:15468484‑M2/24‑33 (MQ=255)
            tgagagcagagatagcgctgatGtccggcgggggt                        >  1:814358‑M2/23‑32 (MQ=255)
            tgagagcagagatagcgctgatGtccggcgggggt                        >  1:18702917‑M2/23‑32 (MQ=255)
            tgagagcagagatagcgctgatGtccggcgggggt                        >  1:4061685‑M2/23‑32 (MQ=255)
            tgagagcagagatagcgctgatGtccggcgggggt                        >  1:5310518‑M2/23‑32 (MQ=255)
            tgagagcagagatagcgctgatGtccggcgggggc                        >  1:4924149‑M2/23‑32 (MQ=255)
            tgagagcagagatagcgctgatGtccggcggggct                        >  1:3656351‑M2/23‑32 (MQ=255)
            tgagagcagagatagcgctgatGtccggcggggct                        >  1:7769455‑M2/23‑32 (MQ=255)
            tgagagcagagatagcgctgatGtccggcggggcg                        >  1:16792126‑M2/23‑32 (MQ=255)
              tGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGtt                      <  1:1089175/35‑1 (MQ=255)
              tGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGtt                      <  1:14287291/35‑1 (MQ=255)
              agagcagagatagcgctgatGTCCGGCGGGGGGtt                      >  1:738621‑M2/21‑35 (MQ=255)
              agagcagagatagcgctgatGTCCGGCGGGGGGtt                      >  1:6325280‑M2/21‑35 (MQ=255)
              agagcagagatagcgctgatGTCCGGCGGGGGGtt                      >  1:13567439‑M2/21‑35 (MQ=255)
               gCCGGAGCGTTGGGCGCTCGTCCGgcggggggggg                     >  1:7121940/1‑32 (MQ=38)
                ccGGAGCGTTGGGCGCTCGTCCGGCGGGCGGtttt                    <  1:7587540/35‑1 (MQ=255)
                ccGGAGCGTTGGGCGCTCGTCCGGCGGGCGGtttt                    <  1:10644306/35‑1 (MQ=255)
                ccGGAGCGTTGGGCGCTCGTCCGGCGGGCGGtttt                    <  1:8946638/35‑1 (MQ=255)
                agcagagatagcgctgatGTCCGGCGGGGGGtttt                    >  1:11413675‑M2/19‑35 (MQ=255)
                 gcagagatagcgctgatGTCCGGCGGGGGgttttc                   >  1:1018042‑M2/18‑34 (MQ=255)
                       gTTGGGCGCTCGTCCGGCGGGCGGGTTTGCCgctc             >  1:5752439/1‑32 (MQ=37)
                          gggCGCTCGTCCGGCGGGCGGTTTTGCCGATAAgg          <  1:15996961/35‑1 (MQ=255)
                               cTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCaaa     <  1:12829939/35‑1 (MQ=255)
                                 cGTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATc   <  1:5055538/35‑1 (MQ=255)
                                  |                                  
GGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATCG  >  REL606/2703927‑2703995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.