New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1306329 =80 (0.780)14 (0.190) 4/34 NT 22.1% intergenic (‑90/+281) cls/kch cardiolipin synthetase/voltage‑gated potassium channel
?REL606 = 3839377 42 (0.580)coding (1104/2415 nt) gyrB DNA gyrase subunit B

Only 100 of 153 total aligned reads displayed.

GGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCA  >  REL606/3839343‑3839411
                                  |                                  
gggcaGCATCGATAATTTTGCCAACCACGATTTTc                                    <  1:18705535/35‑1 (MQ=255)
gggcaGCATCGATAATTTTGCCAACCACGATTTTc                                    >  1:16459603/1‑35 (MQ=255)
 ggCAGCATCGATAATTTTGCCAACCACGATTTTCg                                   <  1:13500888‑M2/35‑2 (MQ=255)
 ggCAGCATCGATAATTTTGCCAACCACGATTTTCg                                   <  1:16852067‑M2/35‑2 (MQ=255)
 ggCAGCATCGATAATTTTGCCAACCACGATTTTCg                                   >  1:127104‑M2/1‑34 (MQ=255)
 ggCAGCATCGATAATTTTGCCAACCACGATTTTCg                                   >  1:7943895‑M2/1‑34 (MQ=255)
  gcagcaTCGATAATTTTGCCAACCACGATTTTCgc                                  <  1:5616079‑M2/35‑3 (MQ=255)
  gcagcaTCGATAATTTTGCCAACCACGATTTTCgc                                  <  1:11478283‑M2/35‑3 (MQ=255)
  gcagcaTCGATAATTTTGCCAACCACGATTTTCgc                                  <  1:20056396‑M2/35‑3 (MQ=255)
  gcagcaTCGATAATTTTGCCAACCACGATTTTCgc                                  >  1:20046787‑M2/1‑33 (MQ=255)
  gcagcaTCGATAATTTTGCCAACCACGATTTTCgc                                  >  1:9115333‑M2/1‑33 (MQ=255)
  gcaccaTCGATAATTTTGCCAACCACGATTTTCgc                                  >  1:19572273‑M2/1‑33 (MQ=255)
   cagcaTGGATAATTTTGCCAACCACGATTTTCgcg                                 >  1:6330722‑M2/1‑32 (MQ=255)
   cagcaTCGATAATTTTGCCAACCACGATTTTCgcg                                 <  1:6519010‑M2/35‑4 (MQ=255)
   cagcaTCGATAATTTTGCCAACCACGATTTTCgcg                                 >  1:9343872‑M2/1‑32 (MQ=255)
   cagcaTCGATAATTTTGCCAACCACGATTTTCgcg                                 >  1:10159023‑M2/1‑32 (MQ=255)
    agcaTCGATAATTTTGCCAACCACTATTTTCgcgt                                <  1:1044839‑M2/35‑5 (MQ=255)
    agcaTCGATAATTTTGCCAACCACGATTTTCgcgt                                <  1:2134764‑M2/35‑5 (MQ=255)
    agcaTCGATAATTTTGCCAACCACGATTTTCgcgt                                <  1:9100762‑M2/35‑5 (MQ=255)
    agcaTCGATAATTTTGCCAACCACGATTTTCgcgt                                <  1:16462238‑M2/35‑5 (MQ=255)
    agcaTCGATAATTTTGCCAACCACGATTTTCgcgt                                <  1:13367382‑M2/35‑5 (MQ=255)
     gcaTCGATAATTTTGCCAACCACGATTTTCgcgtc                               >  1:7037561‑M2/1‑30 (MQ=255)
     gcaTCGATAATTTGGCCAACCACGATTTTCgcgtc                               >  1:5200717‑M2/1‑30 (MQ=255)
      caTCGATAATTTTGCCAACCACGATTTTCgcgtcg                              >  1:4111994‑M2/1‑29 (MQ=255)
      caTCGATAATTTTGCCAACCACGATTTTCgcgtcg                              >  1:16605384‑M2/1‑29 (MQ=255)
      caTCGATAATTTTGCCAACCACGATTTTCgcgtcg                              <  1:10670310‑M2/35‑7 (MQ=255)
       aTCGATAATTTTGCCAACCACGATTTTCgcgtcgg                             >  1:18240348‑M2/1‑28 (MQ=255)
       aTCGATAATTTTGCCAACCACGATTTTCgcgtcgg                             >  1:2647862‑M2/1‑28 (MQ=255)
       aTCGATAATTTTGCCAACCACGATTTTCgcgtcgg                             >  1:18732603‑M2/1‑28 (MQ=255)
       aTCGATAATTTTGCCAACCACGATTTTCgcgtcgg                             <  1:14952106‑M2/35‑8 (MQ=255)
       aTCGATAATTTTGCCAACCACGATTTTCgcgtcgg                             <  1:9699923‑M2/35‑8 (MQ=255)
        tCGATAATTTTGCCAACCACGATTTTCgcgtctgg                            <  1:11600657‑M2/35‑9 (MQ=255)
        tCGATAATTTTGCCAACCACGATTTTCgcgtcggg                            <  1:13267415‑M2/35‑9 (MQ=255)
        tCGATAATTTTGCCAACCACGATTTTCGCGTCGGt                            <  1:17761378/35‑1 (MQ=255)
        tCGATAATTTTGCCAACCACGATTTTCGCGTCGGt                            <  1:3277989/35‑1 (MQ=255)
        tCGATAATTTTGCCAACCACGATTTTCGCGTCGGt                            <  1:6041839/35‑1 (MQ=255)
        tCGATAAGTTTGCCAACCACGATTTTCGCGTCGGt                            <  1:14691130/35‑1 (MQ=255)
         cGATAATTTTGCCAACCACGATTTTCgcgtcgggg                           <  1:5132009‑M2/35‑10 (MQ=255)
         cGATAATTTTGCCAACCACGATTTTCgcgtcgggg                           <  1:12332230‑M2/35‑10 (MQ=255)
         cGATAATTTTGCCAACCACGATTTTCGCGTCGGtt                           <  1:11704757/35‑1 (MQ=255)
         cGATAATTTTGCCAACCACGATTTTCGCGTCGGtt                           <  1:7167710/35‑1 (MQ=255)
         cGATAATTTTGCCAACCACGATTTTCGCGTCGGtt                           <  1:18047642/35‑1 (MQ=255)
         cGATAATTTTGCCAACCACGATTTTCGCGTCGGtt                           <  1:14556220/35‑1 (MQ=255)
          gATAATTTTGCCAACCACGATTTTCgcgtcggggg                          <  1:11945611‑M2/35‑11 (MQ=255)
           aTAATTTTGCCAACCACGATTTTCgcgtcgggggg                         <  1:16377498‑M2/35‑12 (MQ=255)
           aTAATTTTGCCAACCACGATTTTCgcgtcgggggg                         <  1:18671535‑M2/35‑12 (MQ=255)
           aTAATTTTGCCAACCACGATTTTCgcgtcgggggg                         <  1:260117‑M2/35‑12 (MQ=255)
           aTAATTTTGCCAACCACGATTTTCgcgtcgggggg                         <  1:8568513‑M2/35‑12 (MQ=255)
           aTAATTTTGCCAACCACGATTTTCGCGTCGGTTgg                         <  1:17604975/35‑1 (MQ=255)
           aTAATTTTGCCAACCACGATTTTCGCGTCGGTTgg                         <  1:3238725/35‑1 (MQ=255)
            tAATTTTGCCAACCACGATTTTCgcgtcggggggg                        <  1:16692973‑M2/35‑13 (MQ=255)
            tAATTTTGCCAACCACGATTTTCgcgtcggggggg                        <  1:10995621‑M2/35‑13 (MQ=255)
            tAATTTTGCCAACCACGATTTTCGCGTCGGTTggg                        <  1:3529382/35‑1 (MQ=255)
            tAATTTTGCCAACCACGATTTTCGCGTCGGTTggg                        <  1:15418194/35‑1 (MQ=255)
             aaTTTTGCCAACCACGATTTTCGCGTCGGTTGGGt                       <  1:3769830/35‑1 (MQ=255)
             aaTTTTGCCAACCACGATTTTCGCGTCGGTTGGGt                       <  1:11722062/35‑1 (MQ=255)
             aaTTTTGCCAACCACGATTTTCGCGTCGGTTGGGt                       <  1:18920331/35‑1 (MQ=255)
              aTTTTGCCAACCACGATTTTCGCGTCGGTTGGGtt                      <  1:9423412/35‑1 (MQ=255)
               ttttGCCAACCACGATTTTCgcgtcgggggggggt                     <  1:2148225‑M2/35‑16 (MQ=255)
               ttttGCCAACCACGATTTTCgcgtcgggggggggg                     <  1:19819937‑M2/35‑16 (MQ=255)
               ttttGCCAACCACGATTTTCgcgtcgggggggggg                     <  1:11338889‑M2/35‑16 (MQ=255)
               ttttGCCAACCACGATTTTCgcgtcgggggggggg                     <  1:6363326‑M2/35‑16 (MQ=255)
               ttttGCCAACCACGATTTTCGCGTCGGTTGGGttt                     <  1:19814998/35‑1 (MQ=255)
               ttttGCCAACCACGATTTTCGCGTCGGTTGGGttt                     <  1:19106629/35‑1 (MQ=255)
                tttGCCAACCACGATTTTCgcgtcggggggggggt                    <  1:19099097‑M2/35‑17 (MQ=255)
                tttGCCAACCACGATTTTCgcgtcggggggggggg                    <  1:4094026‑M2/35‑17 (MQ=255)
                tttGCCAACCACGATTTTCGCGTCGGTTGGGtttt                    <  1:18338077/35‑1 (MQ=255)
                tttGCCAACCACGATTTTCGCGTCGGTTGGGtttt                    <  1:17207246/35‑1 (MQ=255)
                 ttGCCAACCACGATTTTCgcgtcgggggggggggt                   <  1:6814266‑M2/35‑18 (MQ=255)
                 ttGCCAACCACGATTTTCGCGTCGGTTGGGTTTTc                   <  1:10533782/35‑1 (MQ=255)
                 ttGCCAACCACGATTTTCGCGTCGGTTGGGTTTTc                   <  1:10346474/35‑1 (MQ=255)
                 ttGCCAACCACGATTTTCGCGTCGGTTGGGTTTTc                   <  1:20543822/35‑1 (MQ=255)
                 ttGCCAACCACGATTTTCGCGTCGGTTGGGTTTTc                   <  1:20235514/35‑1 (MQ=255)
                  tGCCAACCACGATTTTCgcgtcgggggggggggtg                  <  1:3049611‑M2/35‑19 (MQ=255)
                  tGCCAACCACGATTTTCGCGTCGGTTGGGTTTTcc                  <  1:14528657/35‑1 (MQ=255)
                  tGCCAACCACGATTTTCGCGTCGGTTGGGTTTTcc                  <  1:4952006/35‑1 (MQ=255)
                   gCCAACCACGATTTTCGCGTAGGTTGGGTTTTCca                 <  1:14790177/35‑1 (MQ=255)
                    ccAACCACGATTTTCGCGTCGGTTGGGTTTTCcag                <  1:8218918/35‑1 (MQ=255)
                    ccAACCACGATTTTCGCGTCGGTTGGGTTTTCcag                <  1:4895736/35‑1 (MQ=255)
                     cAACCACGATTTTCGCGTCGGTTGGGTTTTCcagc               <  1:15573212/35‑1 (MQ=255)
                      aaCCACGATTTTCGCGTCGGTTGGGTTTTCcagca              <  1:3723565/35‑1 (MQ=255)
                      aaCCACGATTTTCGCGTCGGTTGGGTTTTCcagca              <  1:12847573/35‑1 (MQ=255)
                       aCCACGATTTTCGCGTCGGTTGGGTTTTCcagcag             <  1:6039634/35‑1 (MQ=255)
                        ccACGATTTTCGCGTCGGTTGGGTTTTCCAGCAgg            <  1:6539985/35‑1 (MQ=255)
                         cACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGt           <  1:7934149/35‑1 (MQ=255)
                           cGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAt         <  1:6335120/35‑1 (MQ=255)
                           cGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAt         <  1:698007/35‑1 (MQ=255)
                            gATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAtt        <  1:12513971/35‑1 (MQ=255)
                            gATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAtt        <  1:13545435/35‑1 (MQ=255)
                             aTTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc       <  1:13695333/35‑1 (MQ=255)
                             aTTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc       <  1:19474240/35‑1 (MQ=255)
                               tttCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTg     <  1:13929112/35‑1 (MQ=255)
                               tttCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTg     <  1:17522274/35‑1 (MQ=255)
                               tttCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTg     <  1:10880892/35‑1 (MQ=255)
                                ttCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGc    <  1:3134745/35‑1 (MQ=255)
                                ttCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGc    <  1:10179303/35‑1 (MQ=255)
                                 tCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGcc   <  1:1859353/35‑1 (MQ=255)
                                  cgcgTCGGTTGGGTTTTCCAGCAGGTATTCTGCca  <  1:5914290/35‑1 (MQ=255)
                                  cgcgTCGGTTGGGTTTTCCAGCAGGTATTCTGCca  <  1:14656414/35‑1 (MQ=255)
                                  cgcgTCGGTTGGGTTTTCCAGCAGGTATTCTGCca  <  1:10150650/35‑1 (MQ=255)
                                  |                                  
GGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCA  >  REL606/3839343‑3839411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.