New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3190470 =58 (0.560)12 (0.120) 5/46 NT 19.7% coding (511/1269 nt) yhaO predicted transporter
?REL606 4585732 = 42 (0.430)coding (509/1023 nt) yjjN predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding

GCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATC  >  REL606/4585698‑4585766
                                  |                                  
tcgaccggcatggtgctgaccaagctgctggtggg                                    >  1:14047314‑M2/35‑35 (MQ=255)
tcgaccggcatggtgctgaccaagctgctggtggg                                    >  1:19973809‑M2/35‑35 (MQ=255)
tcgaccggcatggtgctgaccaagctgctggtggg                                    >  1:6214916‑M2/35‑35 (MQ=255)
tcgaccggcatggtgctgaccaagctgctgggggg                                    >  1:19151639‑M2/35‑35 (MQ=255)
gCCGTTGCTCCCGGCGAGCAGGTGCTGGTGGTcgg                                    <  1:15042000/35‑1 (MQ=255)
gCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTcgg                                    <  1:17109987/35‑1 (MQ=255)
gCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTcgg                                    <  1:16533684/35‑1 (MQ=255)
gCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTcgg                                    <  1:12542619/35‑1 (MQ=255)
gCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTcgg                                    <  1:9579241/35‑1 (MQ=255)
 cgaccggcatggtgctgaccaagctgctggtgggg                                   >  1:4776801‑M2/34‑35 (MQ=255)
  gaccggcatggtgctgaccaagctgctggtggggg                                  >  1:18551789‑M2/33‑35 (MQ=255)
  gaccggcatggtgctgaccaagctgctggtggggg                                  >  1:19283847‑M2/33‑35 (MQ=255)
  gaccggcatggtgctgaccaagctgctggtggggg                                  >  1:6974053‑M2/33‑35 (MQ=255)
  gaccggcatggtgctgaccaagctgctggtgggcg                                  >  1:11371999‑M2/33‑33 (MQ=255)
  gaccggcatggtgctgaccaagctgctggtgggcg                                  >  1:5661890‑M2/33‑33 (MQ=255)
  cATTGCTCCCGGCGAGCAGGTGCTGGTGGTcgggg                                  <  1:14647605/35‑1 (MQ=255)
  cATTGCTCCCGGCGAGCAGGTGCTGGTGGTcgggg                                  <  1:16102637/35‑1 (MQ=255)
  cATTGCTCCCGGCGAGCAGGTGCTGGTGGGggggg                                  >  1:3429948/1‑35 (MQ=25)
  cATTGCTCCCGGCGAGCAGGTGCTGGTGGGggggg                                  >  1:2987044/1‑35 (MQ=25)
  cATTGCTCCCGGCGAGCAGGTGCTGGTGGGcgggg                                  >  1:10842223/1‑35 (MQ=255)
   accggcatggtgctgaccaagctgctggtgggcgc                                 >  1:15586999‑M2/32‑35 (MQ=255)
   accggcatggtgctgaccaagctgctggtgggcgc                                 >  1:10718703‑M2/32‑35 (MQ=255)
   aTTGCTCCCGGCGAGCAGGTGCTGGTGGTcggggc                                 <  1:19696681/35‑1 (MQ=255)
   aTTGCTCCCGGCGAGCAGGTGCTGGTGGGgggggg                                 >  1:10267743/1‑34 (MQ=25)
   aTTGCTCCCGGCGAGCAGGTGCTGGTGGGgggggc                                 >  1:3033753/1‑35 (MQ=25)
    ttGCTCCCGGCGAGCAGGTGCTGGTGGTcggggcg                                <  1:18825311/35‑1 (MQ=255)
    ccggcatggtgctgaccaagctgctggtggggggg                                >  1:8646032‑M2/31‑33 (MQ=255)
    ccggcatggtgctgaccaagctgctggtgggggcg                                >  1:19376094‑M2/31‑35 (MQ=255)
    ccggcatggtgctgaccaagctgctggtgggcgcg                                >  1:19206156‑M2/31‑35 (MQ=255)
    ccggcatggtgctgaccaagctgctggtgggcgcg                                >  1:9831368‑M2/31‑35 (MQ=255)
     tGCTCCCGGCGAGCAGGTGCTGGTGGTcggggcgg                               <  1:14110580/35‑1 (MQ=255)
     tGCTCCCGGCGAGCAGGTGCTGGTGGTcggggcgg                               <  1:11551216/35‑1 (MQ=255)
     cggcatggtgctgaccaagctgctggtggggccgn                               >  1:20615978‑M2/30‑35 (MQ=255)
     cggcatggtgctgaccaagctgctggtgggcgcgg                               >  1:3026104‑M2/30‑35 (MQ=255)
      ggcatggtgctgaccaagctgctggtgggcgcggg                              >  1:14252824‑M2/29‑35 (MQ=255)
      gCTCCCGGCGAGCAGGTGCTGGTGGGgggggcggg                              >  1:9981963/1‑35 (MQ=25)
      gCTCCCGGCGAGCAGGTGCTGGTGGGgcgggcggg                              >  1:8719266/1‑35 (MQ=21)
       gcatgttgctgaccaagctgctggtgggggcgggg                             >  1:13242958‑M2/28‑35 (MQ=255)
       gcatggtgctgaccaagctgctggtgggggggggg                             >  1:15049191‑M2/28‑35 (MQ=255)
       gcatggtgctgaccaagctgctggtgggggcgggg                             >  1:1986747‑M2/28‑35 (MQ=255)
       cTCCCGGCGAGCAGGTGCTGGTGGTcggggcgggg                             <  1:5477648/35‑1 (MQ=255)
       cTCCCGGCGAGCAGGTGCTGGTGGTcggggcgggg                             <  1:6867933/35‑1 (MQ=255)
        tCCCGGCGAGCAGGTGCTGGTGGTCggggcggggc                            <  1:12317617/35‑1 (MQ=255)
        tCCCGGCGAGCAGGTGCTGGTGGTCggggcggggc                            <  1:1473609/35‑1 (MQ=255)
        tCCCGGCGAGCAGGTGCTGGTGGTCggggcggggc                            <  1:1001049/35‑1 (MQ=255)
        tCCCGGCGAGCAGGTGCTGGTGGGggggggggggg                            >  1:10624667/1‑34 (MQ=21)
        catggtgctgaccaagctgctggtgggggcggggc                            >  1:5544946‑M2/27‑35 (MQ=255)
        catggtgctgaccaagctgctggtgggcgcggggc                            >  1:2914075‑M2/27‑35 (MQ=255)
         cccGGCGAGCAGGTGCTTGTGGTCGGGGCGGGGcc                           >  1:19665320/1‑35 (MQ=255)
         cccGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGcc                           <  1:10410540/35‑1 (MQ=255)
         cccGGCGAGCAGGTGCTGGTGGGgggggggggggg                           >  1:5941959/1‑33 (MQ=18)
         atggtgctgaccaagctgctggtgggcgcggggct                           >  1:11840951‑M2/26‑34 (MQ=255)
         atggtgctgaccaagctgctggtggGCGCGGGGcc                           >  1:20287833‑M2/26‑35 (MQ=255)
          tggtgctgaccaagctgctggtgggggcgggggcg                          >  1:675483‑M2/25‑32 (MQ=255)
          tggtgctgaccaagctgctggtggGGGGGGGgccg                          >  1:13853646‑M2/25‑34 (MQ=255)
          ccGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCa                          <  1:9448882/35‑1 (MQ=255)
          ccGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCa                          <  1:17102987/35‑1 (MQ=255)
          ccGGCGAGCAGGTGCTGGTGGGcggggcggggggc                          >  1:10488025/1‑32 (MQ=25)
           cGGCGAGCAGGTGCTGGTGGTCGGGGAGGGGCCaa                         <  1:7131692/35‑1 (MQ=255)
            ggCGAGCAGGTGCTGGTGGTCGGGGCGNGGCCAAt                        <  1:19896074/35‑1 (MQ=255)
             gCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATc                       <  1:4887556/35‑1 (MQ=255)
             gCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATc                       <  1:10623471/35‑1 (MQ=255)
             gCGAGCAGGTGCTGGTGGGCGGGGGGGGGGCaaag                       >  1:9894813/1‑33 (MQ=18)
              cGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCg                      <  1:10413301/35‑1 (MQ=255)
              cGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCg                      <  1:4275494/35‑1 (MQ=255)
               gAGCAGGTGCTTGTGGTCGGGGCGGGGCCAATCgg                     >  1:16000903/1‑35 (MQ=255)
               gAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCgg                     <  1:2006004/35‑1 (MQ=255)
               gAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCgg                     <  1:8474645/35‑1 (MQ=255)
                  cAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCt                  <  1:7340026/35‑1 (MQ=255)
                  cAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCt                  <  1:11527375/35‑1 (MQ=255)
                    ggTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTgg                <  1:17964071/35‑1 (MQ=255)
                    ggTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTgg                <  1:1906065/35‑1 (MQ=255)
                    ggTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTgg                <  1:1775936/35‑1 (MQ=255)
                    ggTGCTGTGGTCGGGGCGGGGCCAATCGGTCTggg               <  1:4126938/35‑1 (MQ=38)
                       gCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGgcg             <  1:1672575/35‑1 (MQ=255)
                       gCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGgcg             <  1:17919006/35‑1 (MQ=255)
                        cTGGTGGTCGGGGCGGGGCCAATCGGTCTGGgcgc            <  1:13523426/35‑1 (MQ=255)
                        cTGGTGGTCGGGGCGGGGCCAATCGGTCTGGgcgc            <  1:7607796/35‑1 (MQ=255)
                         tggtggTCGGGGCGGGGCCAATCGGTCTGGGcgcg           <  1:5248720/35‑1 (MQ=255)
                          ggtggtCGGGGCGGGGCCAATCGGTCTGGGCgcgg          <  1:408547/35‑1 (MQ=255)
                          ggtggtCGGGGCGGGGCCAATCGGTCTGGGCgcgg          <  1:1798040/35‑1 (MQ=255)
                           gtggtCGGGGCTGGGCCAATCGGGCTGGGGgcggc         >  1:2559200/1‑35 (MQ=21)
                           gtggtCGGGGCGGGGCCAATCGGTCTGGGCgcggc         <  1:2324973/35‑1 (MQ=255)
                           gtggtCGGGGCGGGGCCAATCGGTCTGGGCgcggc         <  1:9206833/35‑1 (MQ=255)
                            tggtCGGGGCGGGGCCAATCGGTCTGGGCgcggcg        <  1:11635489/35‑1 (MQ=255)
                            tggtCGGGGCGGGGCCAATCGGTCTGGGCgcggcg        >  1:6432662/1‑35 (MQ=255)
                            tggtCGGGGCGGGGCCAATCGGGCTGGGCgctgcg        >  1:1172589/1‑35 (MQ=37)
                             ggtCGGGGCGGGGCCAATCGGTCTGGGCGgggcgg       >  1:11000339/1‑35 (MQ=255)
                              gtCGGGGCGGGGCCAATCGGTCTGGGCGCggcggc      <  1:9221951/35‑1 (MQ=255)
                              gtCGGGGCGGGGCCAATCGGTCTGGGCGCggcggc      <  1:15024406/35‑1 (MQ=255)
                               tCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCa     <  1:4483532/35‑1 (MQ=255)
                               tCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCa     <  1:1680021/35‑1 (MQ=255)
                                cggggcggggCCAATCGGTCTGGGCGcggcgggga    >  1:16279608/1‑32 (MQ=255)
                                cggggcggggCCAATCGGTCTGGGCGCGGCGGCaa    <  1:2685717/35‑1 (MQ=255)
                                cggggcggggCCAATCGGTCTGGGCGCGGCGGCaa    <  1:17869668/35‑1 (MQ=255)
                                  gggcggggcCAATCGGTCTGGGCGCGGCGGGaaac  >  1:10231658/1‑33 (MQ=37)
                                  gggcggggcCAATCGGTCTGGGCGCGGCGGCAATc  <  1:5320435/35‑1 (MQ=255)
                                  |                                  
GCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATC  >  REL606/4585698‑4585766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.