New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 201988385 (0.830)18 (0.210) 5/40 NT 23.7% intergenic (‑312/‑115) yeeZ/hisL predicted epimerase, with NAD(P)‑binding Rossmann‑fold domain/his operon leader peptide
?REL606 = 3163334 45 (0.530)coding (1630/2352 nt) ygjK predicted glycosyl hydrolase

Only 100 of 198 total aligned reads displayed.

TAACGTAGTCACTCCAGGCCCCCTCCTTTCCCCGCTCATTCATTAAACAAATCCATTGCCATAAAATAT  >  REL606/2019849‑2019917
                                  |                                  
tAACGTAGTCACTCCAGGCCCCCTCCTTTCCCCGC                                    <  1:16037514‑M1/35‑1 (MQ=255)
 aaCGTAGTCACTCCAGGCCCCCTCCTTTCCCCGCt                                   >  1:6771863/1‑35 (MQ=255)
 aaCGTAGTCACTCCAGGCCCCCTCCTTTCCCCGCt                                   <  1:15662979/35‑1 (MQ=255)
  aCGTAGTCACTCCAGGCCCCCTCCTTTCCCCGCtc                                  <  1:9134965/35‑1 (MQ=255)
  aCGTAGTCACTCCAGGCCCCCTCCTTTCCCCGCtc                                  >  1:14944578/1‑35 (MQ=255)
   cGTAGTCACTCCAGGCCCCCTCCTTTCCCCGCtca                                 <  1:4264591/35‑1 (MQ=255)
   cGTAGTCACTCCAGGCCCCCTCCTTTCCCCGCtca                                 >  1:11582952/1‑35 (MQ=255)
     tAGTCACTCCAGGCCCCCTCCTTTCCCCGCtcatt                               <  1:9204151/35‑1 (MQ=255)
     tAGTCACTCCAGGCCCCCTCCTTTCCCCGCtcatt                               <  1:13145590/35‑1 (MQ=255)
      aGTCACTCCAGGCCCCCTCCTTTCCCCGCtcattc                              <  1:197342/35‑1 (MQ=255)
      aGTCACTCCAGGCCCCCTCCTTTCCCCGCtcattc                              <  1:14785114/35‑1 (MQ=255)
      aGTCACTCCAGGCCCCCTCCTTTCCCCGCtcattc                              >  1:14008303/1‑35 (MQ=255)
      aGTCACTCCAGGCCCCCTCCTTTCCCCGCtcattc                              >  1:10189278/1‑35 (MQ=255)
          aCTCCAGGCCCCCTCCTTTCCCCGCTCATTCATTa                          >  1:3653387/1‑35 (MQ=255)
           cTCCAGGCCCCCTCCTTTCCCCGCTCATTCATTaa                         >  1:11713444/1‑35 (MQ=255)
            tCCAGGCCCCCTCCTTTCCCCGCTCATTCATTaaa                        >  1:20497323/1‑35 (MQ=255)
            tCCAGGCCCCCTCCTTTCCCCGCTCATTCATTaaa                        >  1:13197059/1‑35 (MQ=255)
             ccAGGCACCCTCCTTTCCCCGCTCATTCATTAAAc                       <  1:12966675/35‑1 (MQ=255)
              cAGGCCCCCTCCTTTCCCCGCTCATTCATTAAACa                      >  1:16255506/1‑35 (MQ=255)
              cAGGCCCCCTCCTTTCCCCGCTCATTCATTAAACa                      >  1:19312151/1‑35 (MQ=255)
              cAGGCCCCCTCCTTTCCCCGCTCATTCATTAAACa                      <  1:12632515/35‑1 (MQ=255)
               aGGCCCCCTCCTTTCCCCGCTCATTCATTAAACaa                     <  1:7937006/35‑1 (MQ=255)
               aGGCCCCCTCCTTTCCCCGCTCATTCATTAAACaa                     >  1:1977949/1‑35 (MQ=255)
                ggCCCCCTCCTTTCCCCGCTCATTCATTAAACaaa                    >  1:4009606/1‑35 (MQ=255)
                ggCCCCCTCCTTTCCCCGCTCATTCATTAAACaaa                    >  1:6631518/1‑35 (MQ=255)
                 gCCCCCTCCTTTCCCCGCTCATTCATTACACACAt                   >  1:15153096/1‑35 (MQ=37)
                 gCCCCCTCCTTTCCCCGCTCATTCATTAAACAAAt                   >  1:7856481/1‑35 (MQ=255)
                 gCCCCCTCCTTTCCCCGCTCATTCATTAAACAAAt                   >  1:20440440/1‑35 (MQ=255)
                 gCCCCCTCCTTTCCCCGCTCATTCATTAAACAAAt                   <  1:5240388/35‑1 (MQ=255)
                  tcccctCCTTTCCCCGCcattagcgacatatttat                  <  1:18046928‑M1/34‑19 (MQ=255)
                  cccccTCCTTTCCCCGCcattagcgacatatttat                  <  1:5701223‑M1/35‑19 (MQ=255)
                  cccccTCCTTTCCCCGCTCATTCATTAAACAAATc                  >  1:13303801/1‑35 (MQ=255)
                  cccccTCCTTTCCCCGCTCATTCATTAAACAAATc                  <  1:8772427/35‑1 (MQ=255)
                   ccccTCCTTTCCCCGCTCATTCATTAAACAAATcc                 <  1:17253597/35‑1 (MQ=255)
                    cccTCCTTTCCCCGCcattagcgacatatttatcc                <  1:6876927‑M1/35‑21 (MQ=255)
                    cccTCCTTTCCCCGCTCATTCATTAAACAAATCCa                >  1:253694/1‑35 (MQ=255)
                    cccTCCTTTCCCCGCTCATTCATTAAACAAATCCa                <  1:15998883/35‑1 (MQ=255)
                    cccTCCTTTCCCCGCTCATTCATTAAACAAATCCa                >  1:13827685/1‑35 (MQ=255)
                     cctcctTTCCCCGCTCATTCATTAAACAAATCCAt               <  1:15468178/35‑1 (MQ=255)
                     cctcctTTCCCCGCTCATTCATTAAACAAATCCAt               >  1:745904/1‑35 (MQ=255)
                        tcttGCCCCGCcattagcgacatatttatccaact            <  1:14466506‑M1/34‑25 (MQ=255)
                        gttttccCCGCcattagcgacatatttatccaact            <  1:10523507‑M1/33‑25 (MQ=255)
                        gcttCCCCCGCcattagcgacatatttatccaact            <  1:15594047‑M1/34‑25 (MQ=255)
                        cctTTCCCCGCcattagcgacatatttatccaact            <  1:896361‑M1/35‑25 (MQ=255)
                        cctTTCCCCGCcattagcgacatatttatccaact            <  1:3179300‑M1/35‑25 (MQ=255)
                        cctTTCCCCGCTCATTCATTAAACAAATCCATTGc            >  1:5561451/1‑35 (MQ=255)
                        cctTTCCCCGCTCATTCATTAAACAAATCCATTGc            <  1:8168295/35‑1 (MQ=255)
                        ccgttcccCGCcattagcgacatatttatccaact            <  1:6474337‑M1/32‑25 (MQ=255)
                         ctTTCCCCGCcattagcgacatatttatccaactg           <  1:6179572‑M1/35‑26 (MQ=255)
                         ctTTCCCCGCcattagcgacatatttatccaactg           <  1:7076052‑M1/35‑26 (MQ=255)
                         ctTTCCCCGCcattagcgacatatttatacaactg           <  1:6898178‑M1/35‑26 (MQ=255)
                         ctTTCCCCGCTCATTCATTAAACAAATCCATTGcc           <  1:5912178/35‑1 (MQ=255)
                         ctTTCCCCGCTCATTCATTAAACAAATCCATTGcc           <  1:19697696/35‑1 (MQ=255)
                         ctTTCCCCGCTCATTCATTAAACAAATCCATTGcc           <  1:15427620/35‑1 (MQ=255)
                          tttCCCCGCcattagcgacatatttatccaactgt          <  1:16662287‑M1/35‑27 (MQ=255)
                          tttCCCCGCcattagcgacatatttatccaactgt          <  1:5680895‑M1/35‑27 (MQ=255)
                          tttCCCCGCTCATTCATTAAACAAATCCATTGCCa          <  1:2166584/35‑1 (MQ=255)
                          tttCCCCGCTCATTCATTAAACAAATCCATTGCCa          >  1:500370/1‑35 (MQ=255)
                          ttcccccgccattagcgacatatttatccaactgt          <  1:20292850‑M1/32‑27 (MQ=255)
                          ttcccccgccattagcgacatatttatccaactgt          <  1:1086139‑M1/32‑27 (MQ=255)
                          tccccccgccattagcgacatatttatccaactgt          <  1:4381117‑M1/32‑27 (MQ=255)
                            tCCCCGCcattagcgacatatttatccaactgttc        <  1:14108780‑M1/35‑29 (MQ=255)
                            tCCCCGCTCATTCATTAAACAAATCCATTGCCATa        <  1:6343848/35‑1 (MQ=255)
                            tCCCCGCTCATTCATTAAACAAATCCATTGCCATa        <  1:18254573/35‑1 (MQ=255)
                             ccccGCcattagcgacatatttatccaactgttct       <  1:18091760‑M1/35‑30 (MQ=255)
                             ccccGCcattagcgacatatttatccaactgttct       <  1:2351382‑M1/35‑30 (MQ=255)
                             ccccGCcattagcgacatatttatccaactgttct       <  1:20608701‑M1/35‑30 (MQ=255)
                             ccccGCcattagcgacatatttatccaactgttct       <  1:15809753‑M1/35‑30 (MQ=255)
                             ccccGCTCATTCATTAAACAAATCCATTGCCATaa       <  1:13498280/35‑1 (MQ=255)
                             ccccGCTCATTCATTAAACAAATCCATTGCCATaa       >  1:19046972/1‑35 (MQ=255)
                              cccGCcattagcgacatatttatccaactgttctt      <  1:13721635‑M1/35‑31 (MQ=255)
                              cccGCcattagcgacatatttatccaactgttctt      <  1:10580929‑M1/35‑31 (MQ=255)
                              cccGCcattagcgacatatttatccaactgttctt      <  1:14275984‑M1/35‑31 (MQ=255)
                              cccGCTCATTCATTAAACAAATCCATTGCCATaaa      >  1:2914417/1‑35 (MQ=255)
                              cccGCTCATTCATTAAACAAATCCATTGCCATaaa      <  1:17673288/35‑1 (MQ=255)
                               ccGCcattagcgacatatttatccaactgttcttt     >  1:8493560‑M1/1‑4 (MQ=255)
                               ccGCcattagcgacatatttatccaactgttcttt     <  1:11261844‑M1/35‑32 (MQ=255)
                               ccGCcattagcgacatatttatccaactgttcttt     <  1:7630674‑M1/35‑32 (MQ=255)
                               ccGCcattagcgacatatttatccaactgttcttt     <  1:9316605‑M1/35‑32 (MQ=255)
                               ccGCcattagcgacatatttatccaactgttcttt     <  1:17932154‑M1/35‑32 (MQ=255)
                               ccGCTCATTCATTAAACAAATCCATTGCCATaaaa     <  1:15926581/35‑1 (MQ=255)
                               ccGCTCATTCATTAAACAAATCCATTGCCATaaaa     >  1:4780933/1‑35 (MQ=255)
                               ccGCTCATTCATTAAACAAATCCATTGCCATaaaa     <  1:8885322/35‑1 (MQ=255)
                               ccGCTCATTCATTAAACAAATCCATTGCCATaaaa     <  1:3759626/35‑1 (MQ=255)
                                cGCcattagcgacatatttatccaactgttctttg    <  1:17006813‑M1/35‑33 (MQ=255)
                                cGCcattagcgacatatttatccaactgttctttg    <  1:10419128‑M1/35‑33 (MQ=255)
                                cGCTCATTCATTAAACAAATCCATTGCCATAAAat    >  1:17114024/1‑35 (MQ=255)
                                cGCTCATTCATTAAACAAATCCATTGCCATAAAat    <  1:1763170/35‑1 (MQ=255)
                                cGCTCATTCATTAAACAAATCCATTGCCATAAAat    >  1:18788933/1‑35 (MQ=255)
                                 gCcattagcgacatatttatccaactgttctttgt   <  1:5413815‑M1/35‑34 (MQ=255)
                                 gCcattagcgacatatttatccaactgttctttgt   >  1:17799449‑M1/1‑2 (MQ=255)
                                 gCTCATTCATTAAACAAATCCATTGCCATAAAata   <  1:8184907/35‑1 (MQ=255)
                                  ccattagcgacatatttatccaactgttctttgtc  >  1:1908858‑M1/1‑1 (MQ=255)
                                  ccattagcgacatatttatccaactgttctttgtc  <  1:3567154‑M1/35‑35 (MQ=255)
                                  ccattagcgacatatttatccaactgttctttgtc  <  1:10983041‑M1/35‑35 (MQ=255)
                                  ccattagcgacatatttatccaactgttctttgtc  <  1:4440837‑M1/35‑35 (MQ=255)
                                  ccattagcgacatatttatccaactgttctttgtc  <  1:7253454‑M1/35‑35 (MQ=255)
                                  ccattagcgacatatttatccaactgttctttgtc  <  1:17461153‑M1/35‑35 (MQ=255)
                                  ccattagcgacatatttatccaactgttctttgtc  <  1:16753407‑M1/35‑35 (MQ=255)
                                  cTCATTCATTAAACAAATCCATTGCCATAAAatat  >  1:7402221/1‑35 (MQ=255)
                                  |                                  
TAACGTAGTCACTCCAGGCCCCCTCCTTTCCCCGCTCATTCATTAAACAAATCCATTGCCATAAAATAT  >  REL606/2019849‑2019917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.