New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3310921 | 77 (0.750) | 8 (0.110) | 3/34 | NT | 15.0% | coding (824/1068 nt) | degS | serine endoprotease, periplasmic |
? | REL606 | 4603001 = | 36 (0.490) | coding (287/780 nt) | yjjV | predicted DNase |
GGCGGACGCGAGATCGCACCACTGCACGCACAGAGCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3310881‑3310921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtggGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC > REL606/4603001‑4603034 GGCGGACGCGAGATCGCACCACTGCACGCACAGAG > 1:16331197/1‑35 GGCGGACGCGAGATCGCACCACTGCACGCACAGAG > 1:3601438/1‑35 GGCGGACGCGAGATCGCACCACTGCACGCACAGAG < 1:14457127/35‑1 GGCGGACGCGAGATCGCACCACTGCACGCACAGAG < 1:13146290/35‑1 GCGGACGCGAGATCGCACCACTGCACGCACAGAGC < 1:3272508/35‑1 GCGGACGCGAGATCGCACCACTGCACGCACAGAGC > 1:7071602/1‑35 CGGACGCGAGATCGCACCACTGCACGCACAGAGCG < 1:17167153/35‑1 CGGACGCGAGATCGCACCACTGCACGCACAGAGCG < 1:10388013/35‑1 CGGACGCGAGATCGCACCACTGCACGCACAGAGCG > 1:9150725/1‑35 GGACGCGAGATCGCACCACTGCACGCACAGAGCGG > 1:17113750/1‑35 GGACGCGAGATCGCACCACTGCACGCACAGAGCGG < 1:10697244/35‑1 GACGCGAGATCGCACCACTGCACGCACAGAGCGGT < 1:583837/35‑1 GACGCGAGATCGCACCACTGCACGCACAGAGCGGT > 1:5296486/1‑35 GACGCGAGATCGCACCACTGCACGCACAGAGCGGT < 1:15445843/35‑1 ACGCGAGATCGCACCACTGCACGCACAGAGCGGTG < 1:11791237/35‑1 ACGCGAGATCGCACCACTGCACGCACAGAGCGGTG < 1:4712195/35‑1 ACGCGAGATCGCACCACTGCACGCACAGAGCGGTG > 1:3068867/1‑35 ACGCGAGATCGCACCACTGCACGCACAGAGCGGTG > 1:11696420/1‑35 ACGCGAGATCGCACCACTGCACGCACAGAGCGGTG < 1:8162906/35‑1 ACGCGAGATCGCACCACTGCACGCACAGAGCGGTG < 1:16005267/35‑1 CGCGAGATCGCACCACTGCACGCACATAGCGGTGG > 1:16518741/1‑35 CGCGAGATCGCACCACTGCACGCACAGAGCGGTGG < 1:18934222/35‑1 gctAGATCGCACCACTGCACGCACAGAGCGGTGGG > 1:3494836/4‑35 GCGAGATCGCACCACTGCACGCACAGAGCGGTGGG > 1:4388828/1‑35 GCGAGATCGCACCACTGCACGCACAGAGCGGTGGG > 1:4683564/1‑35 GCGAGATCGCACCACTGCACGCACAGAGCGGTGGG > 1:13177332/1‑35 CGAGATCGCACCACTGCACGCACAGAGCGGTGGGG > 1:3848001/1‑35 CGAGATCGCACCACTGCACGCACAGAGCGGTGGGG > 1:1393830/1‑35 CGAGATCGCACCACTGCACGCACAGAGCGGTGGGG > 1:20425053/1‑35 CGAGATCGCACCACTGCACGCACAGAGCGGTGGGG > 1:6531210/1‑35 GAGATCGCACCACTGCACGCACAGAGCGGTGGGGt > 1:318886/1‑34 GAGATCGCACCACTGCACGCACAGAGCGGTGGGGt > 1:2155901/1‑34 GAGATCGCACCACTGCACGCACAGAGCGGTGGGGt > 1:1079402/1‑34 GAGATCGCACCACTGCACGCACAGAGCGGTGGGGG > 1:14453017/1‑35 AGATCGCACCACTGCACGCACAGAGCGGTGGGGtc > 1:8604518/1‑33 AGATCGCACCACTGCACGCACAGAGCGGTGGGGta > 1:4172561/1‑33 GATCGCACCACTGCACGCACAGAGCGGTGGGGtat > 1:8811627/1‑32 GATCGCACCACTGCACGCACAGAGCGGTGGGGccc > 1:18632016/1‑32 GATCGCACCACTGCACGCACAGAGCGGTGGGGTAG > 1:5295713/1‑35 GATCGCACCACTGCACGCACAGAGCGGTGGGGTAG > 1:2018311/1‑35 GATCGCACCACTGCACGCACAGAGCGGTGGGGTAG > 1:17451229/1‑35 ATCGCACCACTGCACGCACAGAGCGGTGGGGTAGg > 1:1579700/1‑34 ATCGCACCACTGCACGCACAGAGCGGTGGGGGAGg > 1:4472139/1‑34 ATCGCACCACTGCACGCACAGAGCGGTGGGGGAGA > 1:14187439/1‑35 TCGCACCACTGCACGCACATAGCGGTGGGGGAGAT > 1:16464277/1‑35 TCGCACCACTGCACGCACAGAGCGGTGGGGGAGAT > 1:4171119/1‑35 CGCACCACTGCACGCACAGAGCGGTGGGGTAGATC > 1:7283460/1‑35 CGCACCACTGCACGCACAGAGCGGTGGGGGAGATC > 1:7308086/1‑35 CGCACCACTGCACGCACAGAGCGGTGGGGGAGATC > 1:7715199/1‑35 GCACCACTGCACGCACAGAGCGGTGGGGTAGATCa > 1:8755187/1‑34 GCACCACTGCACGCACAGAGCGGTGGGGGAGATCa > 1:3459976/1‑34 gccGTGGGGGAGATCGGTCTGGATCTCTTTGGCGA < 1:1307703/32‑1 GCGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGA < 1:4416061/35‑1 GCGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGA < 1:7444084/35‑1 GCGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGA > 1:4960205/1‑35 GCGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGA < 1:20517083/35‑1 GCGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGA < 1:5546286/35‑1 CGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGAC > 1:5198463/1‑35 CGGTGGGGGAGATCGGTCTGGATCTCTTTGGCGAC < 1:117376/35‑1 GGTGGGGGAGATCGGTCTGGATCTCTTTGGCGACG < 1:14099307/35‑1 GGTGGGGGAGATCGGTCTGGATCTCTTTGGCGACG < 1:13274254/35‑1 GGTGGGGGAGATCGGTCTGGATCTCTTTGGCGACG > 1:18109663/1‑35 GGTGGGGGAGATCGGTCTGGATCTCTTTGGCGACG > 1:6990160/1‑35 GGTGGGGGAGATCGGTCTGGATCTCTTTGGCGACG < 1:18024013/35‑1 GTGTGGGAGATCGGTCTGGATCTCTTTGGCGACGA > 1:18349812/1‑35 GTGGGGGAGATCGGTCTGGATCTCTTTGGCGACGA < 1:15287085/35‑1 GTGGGGGAGATCGGTCTGGATCTCTTTGGCGACGA > 1:19591123/1‑35 GTGGGGGAGATCGGTCTGGATCTCTTTGGCGACGA > 1:17706931/1‑35 TGGGGGAGATCGGTCTGTATCTCTTTGGCGACGAT > 1:8540497/1‑35 TGGGGGAGATCGGTCTGGATCTCTTTGGCGACGAT < 1:14669481/35‑1 TGGGGGAGATCGGTCTGGATCTCTTTGGCGACGAT < 1:10611201/35‑1 GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC > 1:7335806/1‑35 GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC > 1:915197/1‑35 GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC > 1:6848534/1‑35 GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC < 1:12725776/35‑1 GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC > 1:4464402/1‑35 GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC > 1:291380/1‑35 GGGGGAGATCGGTCTGGATCTCTTTGGCGACGATC > 1:16633455/1‑35 GGGGGAGATCGGTATGGATCTCTTTGGCGACGATC > 1:3518159/1‑35 GGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC < 1:4708660/35‑1 GGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC > 1:3707986/1‑35 GGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC > 1:14712836/1‑35 GGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC > 1:15139302/1‑35 GGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC > 1:3187240/1‑35 GGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC > 1:18051980/1‑35 GGCGGACGCGAGATCGCACCACTGCACGCACAGAGCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3310881‑3310921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtggGGGAGATCGGTCTGGATCTCTTTGGCGACGATCC > REL606/4603001‑4603034 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |