New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 4551446NA (NA)9 (0.090) 8/46 NT 7.0% noncoding (768/768 nt) IS1 repeat region
?REL606 4560889 = 119 (1.210)coding (135/1590 nt) hsdM DNA methylase M

Only 100 of 188 total aligned reads displayed.

CCCAGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCTTTACACATTTTCAAAAACAGCA  >  REL606/4560855‑4560923
                                  |                                  
cccAGCGGTAGCCTTCCGGCAGGTATTCCGCTTcc                                    <  1:13139724/35‑1 (MQ=255)
cccAGCGGTAGCCTTCCGGCAGGGATTTCGCTTcc                                    >  1:17536439/1‑35 (MQ=25)
 ccAGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCt                                   <  1:15633433/35‑1 (MQ=255)
 ataaaacactatcaataagttggagtcattaccCt                                   >  1:12358203‑M2/34‑35 (MQ=255)
  cAGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTg                                  <  1:10076281/35‑1 (MQ=255)
  cAGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTg                                  <  1:7994652/35‑1 (MQ=255)
  cAGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTg                                  <  1:16879629/35‑1 (MQ=255)
  cAGCGGTAGCCTTCCGGCAGGTATTCCGCTTACTg                                  <  1:7395792/35‑1 (MQ=255)
   aGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTGt                                 <  1:1550158/35‑1 (MQ=255)
    gCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTGTc                                <  1:12047656/35‑1 (MQ=255)
    gCGGTAGCCTTCCGGCAGGTATTCCACTTCCTGTc                                <  1:19588406/35‑1 (MQ=255)
     cGGTAGCCTTCCGGCAGGTATTCCGCTTTCTGTcc                               >  1:15243050/1‑35 (MQ=255)
     cGGTAGCCTTCCGGCAGGTATTCCGCTTCCTGTcc                               <  1:8087181/35‑1 (MQ=255)
     cGGTAGCCTTCCGGCAGGTATTCCGCTTCCTGTcc                               <  1:12587204/35‑1 (MQ=255)
      ggTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCg                              <  1:19090281/35‑1 (MQ=255)
      ggTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCg                              <  1:2687459/35‑1 (MQ=255)
      ggTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCg                              <  1:3298934/35‑1 (MQ=255)
       gTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCgg                             <  1:11748434/35‑1 (MQ=255)
       gTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCgg                             <  1:1623429/35‑1 (MQ=255)
       gTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCgg                             >  1:10421116/1‑35 (MQ=255)
       gTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCgg                             <  1:14255678/35‑1 (MQ=255)
        tAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGt                            <  1:667131/35‑1 (MQ=255)
        tAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGt                            >  1:14118628/1‑35 (MQ=255)
        actatcaataagttggagtcattaccCTGTCCGGt                            <  1:13688259‑M2/9‑1 (MQ=255)
         tctcTTCCGGCAGGTATTCCGCTTCCTGTCCGGtt                           <  1:11930387/32‑1 (MQ=255)
         aGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGtt                           >  1:18405000/1‑35 (MQ=255)
         aGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGtt                           <  1:7735935/35‑1 (MQ=255)
         aGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGtg                           >  1:13061199/1‑34 (MQ=255)
          gCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGttt                          <  1:20111415/35‑1 (MQ=255)
          gCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGttt                          <  1:10358877/35‑1 (MQ=255)
           ccTTCCGGCAGGTATTCCGCTTCCTGTCCGGtggt                         <  1:4900186/35‑4 (MQ=255)
            cTTCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCt                        <  1:17265814/35‑1 (MQ=255)
            cTTCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCt                        <  1:5128695/35‑1 (MQ=255)
            cTTCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCt                        >  1:10573702/1‑35 (MQ=255)
             ttCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCtt                       <  1:17548450/35‑1 (MQ=255)
             ttCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCtt                       <  1:5008030/35‑1 (MQ=255)
             ttCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCtt                       >  1:12715128/1‑35 (MQ=255)
             ttCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCtt                       <  1:9923121/35‑1 (MQ=255)
             caataagttggagtcattaccCTGTCCGGTTTCtt                       <  1:20232665‑M2/14‑1 (MQ=255)
              tCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCttt                      >  1:7782928/1‑35 (MQ=255)
              tCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCttt                      >  1:14815320/1‑35 (MQ=255)
              tCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCttt                      >  1:3618233/1‑35 (MQ=255)
              tCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCttt                      >  1:8956453/1‑35 (MQ=255)
               ccGGCAGGTATTCCGCTTCCTGTCCGGTTTCTTTa                     <  1:5763192/35‑1 (MQ=255)
               ccGGCAGGGATTCCGCTTCCTGTCCGGTTTCTTTa                     >  1:12552684/1‑35 (MQ=255)
                cGGCAGGTATTCCGCTTCCTGTCCGGTTTCTTTac                    <  1:9042006/35‑1 (MQ=255)
                cGGCAGGGATTCCGCTTCCTGTCCGGTTTCTTTac                    >  1:20459001/1‑35 (MQ=255)
                cGGCAGGGATTCCGCTTCCTGTCCGGTTTCTTTac                    >  1:19724767/1‑35 (MQ=255)
                cGGCAGGGATTCCGCTTCCTGTCCGGTTTCTTTac                    >  1:4502764/1‑35 (MQ=255)
                 ggCAGGTATTCCGCTTCCTGTCCGGTTTCTTTaca                   <  1:3539206/35‑1 (MQ=255)
                  gCAGGTATTCCGCTTCCTGTCCGGTTTCTTTacac                  >  1:17004588/1‑35 (MQ=255)
                   gttggagtcattaccCTGTCCGGTTTCTTTAcaca                 <  1:2175040‑M2/20‑1 (MQ=255)
                   cAGGTATTCCGCTTCCTGTCCGGTTTCTTTAcaca                 >  1:14708253/1‑35 (MQ=255)
                   cAGGTATTCCGCTTCCTGTCCGGTTTCTTTAcaca                 <  1:6966117/35‑1 (MQ=255)
                    aGGTATTCCGCTTCCTGTCCGGTTTCTTTACACAt                >  1:8197896/1‑35 (MQ=255)
                    aGGTATTCCGCTTCCTGTCCGGTTTCTTTACACAt                <  1:1878976/35‑1 (MQ=255)
                    aGGTATTCCGCTTCCTGTCCGGTTTCTTTACACAt                >  1:19005500/1‑35 (MQ=255)
                    aGGTATTCCGCTTCCTGTCCGGTTTCTTTACACAt                <  1:12302379/35‑1 (MQ=255)
                    aGGTATTCCGCTTCCTGTCCGGTTTCTTTACACAt                <  1:6721119/35‑1 (MQ=255)
                     ggTATTCCGCTTCCTGTCCGGTTTCTTTACACAtt               >  1:17009641/1‑35 (MQ=255)
                      ggagtcattaccCTGTCCGGTTTCTTTACACAttt              >  1:2276032‑M2/13‑35 (MQ=255)
                      gTATTCCGCTTCCTGTCCGGTTTCTTTACACAttt              <  1:14567237/35‑1 (MQ=255)
                      gTATTCAGCTTCCTGTCCGGTTTCTTTACACAttt              <  1:17673231/35‑1 (MQ=255)
                       tATTCCGCTTCCTGTCCGGTTTCTTTACACAtttt             <  1:19542935/35‑1 (MQ=255)
                       tATTCCGCTTCCTGTCCGGTTTCTTTACACAtttt             >  1:16793515/1‑35 (MQ=255)
                        aTTCCGCTTCCTGTCCGGTTTCTTTACACATTTTc            >  1:9744970/1‑35 (MQ=255)
                        aTTCCGCTTCCTGTCCGGTTTCTTTACACATTTTc            <  1:17803123/35‑1 (MQ=255)
                        aTTCCGCTTCCTGTCCGGTTTCTTTACACATTTTc            >  1:4601939/1‑35 (MQ=255)
                         ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa           >  1:13474857/1‑35 (MQ=255)
                         ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa           >  1:12932278/1‑35 (MQ=255)
                         ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa           <  1:1060490/35‑1 (MQ=255)
                         ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa           <  1:9544408/35‑1 (MQ=255)
                         ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa           >  1:10293675/1‑35 (MQ=255)
                         ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa           <  1:17209901/35‑1 (MQ=255)
                         ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa           >  1:18721693/1‑35 (MQ=255)
                          tCCGCTTCCTGTCCGGTTTCTTTACACATTTTCaa          >  1:16455572/1‑35 (MQ=255)
                           ccGCTTCCTGTCCGGTTTCTTTACACATTTTCaaa         >  1:17165955/1‑35 (MQ=255)
                           ccGCTTCCTGTCCGGTTTCTTTACACATTTTCaaa         <  1:6269229/35‑1 (MQ=255)
                           ccGCTTCCTGTCCGGTTTCTTTACACATTTTCaaa         >  1:6502127/1‑35 (MQ=255)
                           ccGCTTCCTGTCCGGTTTCTTTACACATTTTCaaa         >  1:925810/1‑35 (MQ=255)
                             gCTTCCTGTCCGGTTTCTTTACACATTTTCaaaaa       <  1:13522826/35‑1 (MQ=255)
                             gCTTCCTGTCCGGTTTCTTTACACATTTTCaaaaa       >  1:1013048/1‑35 (MQ=255)
                             gCTTCCTGTCCGGTTTCTTTACACATTTTCaaaaa       >  1:10715055/1‑35 (MQ=255)
                             gCTTCCTGTCCGGTTTCTTTACACATTTTCaaaaa       >  1:13945483/1‑35 (MQ=255)
                              cTTCCTGTCCGGTTTCTTTACACATTTTCAAAAAc      <  1:12410853/35‑1 (MQ=255)
                              cTTCCTGTCCGGTTTCTTTACACATTTTCAAAAAc      >  1:5200468/1‑35 (MQ=255)
                              cTTCCTGTCCGGTTTCTTTACACATTTTCAAAAAc      <  1:11617000/35‑1 (MQ=255)
                              cTTCCTGTCCGGTTTCTTTACACATTTTCAAAAAc      <  1:8599988/35‑1 (MQ=255)
                               ttCCTGTCCGGTTTCTTTACACATTTTCAAAAAca     >  1:14660883/1‑35 (MQ=255)
                               ttCCTGTCCGGTTTCTTTACACATTTTCAAAAAca     >  1:5605045/1‑35 (MQ=255)
                               ttCCTGTCCGGTTTCTTTACACATTTTCAAAAAca     <  1:5131704/35‑1 (MQ=255)
                               ttCCTGTCCGGTTTCTTTACACATTTTCAAAAAca     <  1:3314271/35‑1 (MQ=255)
                               ttCCTGTCCGGTTTCTTTACACATTTTCAAAAAca     >  1:2523842/1‑35 (MQ=255)
                               ttCCTGTCCGGTTTCTTTACACATTTCCAAAAAca     >  1:3325860/1‑35 (MQ=255)
                                tCCTGTCCGGTTTCTTTACACATTTTCAAAAAcag    <  1:14015739/35‑1 (MQ=255)
                                tCCTGTCCGGTTTCTTTACACATTTTCAAAAAcag    <  1:617825/35‑1 (MQ=255)
                                 cCTGTCCGGTTTCTTTACACATTTTCAAAAACAGc   >  1:6861336‑M2/2‑35 (MQ=255)
                                  cTGTCCGGTTTCTTTACACATTTTCAAAAAcagca  <  1:16400980/35‑1 (MQ=255)
                                  cTGTCCGGTTTCTTTACACATTTTCAAAAAcagca  <  1:121643/35‑1 (MQ=255)
                                  cTGTCCGGTTTCTTTACACATTTTCAAAAAcagca  >  1:20082852/1‑35 (MQ=255)
                                  |                                  
CCCAGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCTTTACACATTTTCAAAAACAGCA  >  REL606/4560855‑4560923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.