New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1181580 | 88 (0.860) | 8 (0.100) | 3/38 | NT | 11.2% | coding (919/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
? | REL606 | 2872317 = | 57 (0.700) | coding (1204/1263 nt) | lysA | diaminopimelate decarboxylase, PLP‑binding |
ACCAGCTGGTGGTGGAACCGACGCTGCAAACCACCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1181542‑1181580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgCCTGACCATTATCAAACAGAACTTCTGGTAACAG > REL606/2872317‑2872350 ACCAGCTGGTGGTGGAACCGACGCTGCAAACCACC > 1:9441096/1‑35 CCAGCTGGTGGTGGAACCGACGCTGCAAACCACCC > 1:13377883/1‑35 CCAGCTGGTGGTGGAACCGACGCTGCAAACAACCC > 1:16103753/1‑35 AGCTGGTGGTGGAACCGACGCTGCAAACCACCCcc > 1:9779363/1‑33 ggGCAAACCACCCGCGCCTGACCATTATCAAACAG < 1:6532756/33‑1 gGCAAACCACCCGCGCCTGACCATTATCAAACAGA < 1:3833212/34‑1 gGCAAAACACCCGCGCCTGACCATTATCAAACAGA < 1:1353760/34‑1 gcgAACCACCCGCGCCTGACCATTATCAAACAGAA < 1:5035346/32‑1 caAAACCACCCGCGCCTGACCATTATCAAACAGAA < 1:17137696/33‑1 GCAAACCACCCGCGCCTGACCATTATCAAACAGAA < 1:3101063/35‑1 CAAACCACCCGCGCCTGACCATTATCAAACAGAAC < 1:4663460/35‑1 AACCCCCCGCGCCTGACCATTATCAAACAGAACTT < 1:8564641/35‑1 ACCACCCGCGCCTGACCATTATCAAACAGAACTTC < 1:17970523/35‑1 tCACCCGCGCCTGACCATTATCAAACAGAACTTCT < 1:12173202/34‑1 aCACCCGCGCCTGACCATTATCAAACAGAACTTCT < 1:8931517/34‑1 aCACCCGCGCCTGACCATTATCAAACAGAACTTCT < 1:20313675/34‑1 CCACCCGCGCCTGACCATTATCAAACAGAACTTCT < 1:10148562/35‑1 CACCCGCGCCTGACCATTATCAAACAGAACTTCTG < 1:3665170/35‑1 CACCCGCGCCTGACCATTATCAAACAGAACTTCTG < 1:15791783/35‑1 ACCCGCGCCTGACCATTATCAAACAGAACTTCTGG < 1:10546972/35‑1 ACCCGCGCCTGACCATTATCAAACAGAACTTCTGG < 1:17719599/35‑1 CCCGCGCCTGACCATTATCAAACAGAACTTCTGGT < 1:8525138/35‑1 CCCGCGCCTGACCATTATCAAACAGAACTTCTGGT < 1:4962095/35‑1 CCCGCGCCTGACCATTATCAAACAGAACTTCTGGT < 1:19308749/35‑1 CCCGCGCCTGACCATTATCAAACAGAAATTCTGGT < 1:8561052/35‑1 CCGCGCCTGACCATTATCAAACAGAACTTCTGGTA < 1:17786542/35‑1 CCGCGCCTGACCATTATCAAACAGAACTTCTGGTA < 1:13268672/35‑1 CCGCGCCTGACCATTATCAAACAGAACTTCTGGTA < 1:8862396/35‑1 CGCGCCTGACCATTATCAAACAGAACTTCTGGTAA < 1:19777637/35‑1 CGCGCCTGACCATTATCAAACAGAACTTCTGGTAA > 1:6323340/1‑35 GCGCCTGACCATTATCAAACAGAACTTCTGGTAAC > 1:3395688/1‑35 GCGCCTGACCATTATCAAACAGAACTTCTGGTAAC < 1:10687953/35‑1 GCGCCTGACCATTATCAAACAGAACTTCTGGTAAC > 1:12120814/1‑35 CGCCTGACCATTATCAAACAGAACTTCTGGTAACA < 1:17954251/35‑1 CGCCTGACCATTATCAAACAGAACTTCTGGTAACA < 1:949267/35‑1 CGCCTGACCATTATCAAACAGAACTTCTGGTAACA > 1:9441348/1‑35 CGCCTGACCATTATCAAACAGAACTTCTGGTAACA > 1:7817113/1‑35 CGCCTGACCATTATCAAACAGAACTTCTGGTAACA > 1:15295502/1‑35 CGCCTGACCATTATCAAACAGAACTTCTGGTAACA > 1:19370389/1‑35 GCCTGACCATTATCAAACAGAACTTCTGGTAACAG > 1:18618698/1‑35 GCCTGACCATTATCAAACAGAACTTCTGGTAACAG < 1:15494417/35‑1 GCCTGACCATTATCAAACAGAACTTCTGGTAACAG > 1:15706322/1‑35 GCCTGACCATTATCAAACAGAACTTCTGGTAACAG > 1:2719616/1‑35 ACCAGCTGGTGGTGGAACCGACGCTGCAAACCACCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1181542‑1181580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgCCTGACCATTATCAAACAGAACTTCTGGTAACAG > REL606/2872317‑2872350 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |