New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 326209 =90 (0.880)5 (0.050) 3/46 NT 7.2% coding (854/1887 nt) prpE predicted propionyl‑CoA synthetase with ATPase domain
?REL606 3368427 = 42 (0.430)coding (508/990 nt) rpoA DNA‑directed RNA polymerase subunit alpha

CCCCACCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/326219‑326209
‑‑‑‑‑‑‑‑‑‑cGGCCGATTGGGCGCTCATCTTCTTCCGAATGAAT  >  REL606/3368427‑3368460
                                             
gCCCCCCACCCGGCCGATTGGGCGCTCATCTTCTT            <  1:330604/34‑1
gCCCAGCACCCGGCCGATTGGGCGCTCATCTTCTT            <  1:20434107/34‑1
CCCCACCACCCGGCCGATTGGGCGCTCATCTTCTT            <  1:5816918/35‑1
 CCCACCACCCGGCCGATTGGGCGCTCATCTTCTTC           <  1:8429175/35‑1
    cCCACCCGGCCGATTGGGCGCTCATCTTCTTCCGA        <  1:15902812/34‑1
    ACCACCCGGCCGATTGGGCGCTCATCTTCTTCCGA        <  1:18063869/35‑1
      CACCCGGCCGATTGGGCGCTCATCTTCTTCCGAAT      <  1:12059086/35‑1
       ACCCGGCCGATTGGGCGCTCATCTTCTTCCGAATG     <  1:1381351/35‑1
        CCCGGCCGATTGGGCGCTCATCTTCTTCCGAATGA    <  1:18780528/35‑1
          CGGCCGATTGGGCGCTCATCTTCTTCCGAATGAAT  <  1:16775112/35‑1
          CGGCCGATTGGGCGCTCATCTTCTTCCGAATGAAT  <  1:19133240/35‑1
                                             
CCCCACCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/326219‑326209
‑‑‑‑‑‑‑‑‑‑cGGCCGATTGGGCGCTCATCTTCTTCCGAATGAAT  >  REL606/3368427‑3368460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.