New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 217501745 (0.440)18 (0.200) 5/42 NT 24.6% coding (1595/1716 nt) dld D‑lactate dehydrogenase, FAD‑binding, NADH independent
?REL606 = 4351424 71 (0.790)intergenic (+32/‑106) groEL/yjeI chaperonin GroEL/hypothetical protein

AGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2174981‑2175017
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAATT  <  REL606/4351424‑4351391
                                                                       
AGCGGGGCGCGCAGTACCCTGCCGAGCATAACGTC                                      <  1:5599115/35‑1
AGCGCGGCGCGCAGTACCCTGCCGAGCATATCGTC                                      >  1:18679184/1‑35
AGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTC                                      >  1:9272536/1‑35
AGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTC                                      <  1:14597045/35‑1
AGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTC                                      >  1:5233997/1‑35
AGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTC                                      <  1:16917706/35‑1
AGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTC                                      <  1:7541959/35‑1
AGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTC                                      >  1:16165526/1‑35
AGCGCGGCGCGAAGTACCCTGCCGAGCATAACGTC                                      <  1:6438621/35‑1
 GCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCG                                     <  1:14679199/35‑1
 GCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCG                                     >  1:1389048/1‑35
 GCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCG                                     <  1:16666720/35‑1
  CGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGG                                    <  1:18722093/35‑1
  CGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGG                                    <  1:19848530/35‑1
    CGGCGCGCAGTACCCTGCCGAGCATAACGTCGGGG                                  >  1:11647137/1‑35
    CGGCGCGCAGTACCCTGCCGAGCATAACGTCGGGG                                  >  1:14213556/1‑35
     GGCGCGCAGTACCCTGCCGAGCATAACGTCGGGcg                                 >  1:19406406/1‑33
     GGCGCGCAGTACCCTGCCGAGCATAACGTCGGGGG                                 >  1:4003540/1‑35
      GCGCGCAGTACCCTTCCGAGCATAACGTCGGGGGg                                >  1:14190980/1‑34
      GCGCGCAGTACCCTGCCGAGCATAACGTCGGGGcg                                >  1:10060314/1‑33
      GCGCGCAGTACCCTGCCGAGCATAACGTCGGGCGT                                >  1:11030691/1‑35
       CGCGCAGTACCCTGCCGAGCATAACGTCGGGGGgt                               >  1:12481939/1‑33
        GCGCAGTACCCTGCCGAGCATAACGTCGGGGGcgt                              >  1:15718224/1‑32
        GCGCAGTACCCTGCCGAGCATAACGTCGGGGGTTT                              >  1:14629470/1‑35
        GCGCAGTACCCTGCCGAGCATAACGTCGGGGGTTT                              >  1:15252824/1‑35
        GCGCAGTACCCTGCCGAGCATAACGTCGGGGGGTT                              >  1:10700903/1‑35
        GCGCAGTACCCTGCCGAGCATAACGTCGGGGGGTT                              >  1:1836624/1‑35
         CGCAGTACCCTGCCGAGCATAACGTCGGGGGTTTG                             >  1:11689061/1‑35
         CGCAGTACCCTGCCGAGCATAACGTCGGGGGGTTt                             >  1:16122291/1‑34
          GCAGTACCCTGCCGAGCATAACGTCGGGGGTTTtt                            >  1:1784548/1‑33
          GCAGTACCCTGCCGAGCATAACGTCGGGGGCTTGT                            >  1:13438375/1‑35
            AGTACCCTGCCTAGCATAACGTCGGGGGTTTGTTT                          >  1:19566853/1‑35
            AGTACCCTGCCGAGCATAACGTCGGGGGTTTTTTT                          >  1:10724678/1‑35
            AGTACCCTGCCGAGCATAACGTCGGGGGTTTGTTT                          >  1:2099526/1‑35
            AGTACCCTGCCGAGCATAACGTCGGGGGTTTGTTT                          >  1:6130990/1‑35
            AGTACCCTGCCGAGCATAACGTCGGGGGGTTGTTT                          >  1:17978284/1‑35
             GTACCCTGCCGAGCATAACGTCGGGGGTTTTTTTA                         >  1:19259092/1‑35
             GTACCCTGCCGAGCATAACGTCGGGGGTTTGTTTA                         >  1:9077867/1‑35
             GTACCCTGCCGAGCATAACGTCGGGGGTTTGTTTA                         >  1:18030506/1‑35
              TACCCTGCCGAGCATAACGTCGGGGGTTTGTTTta                        >  1:9718289/1‑33
               ACCCTGCCGAGCATAACGTCGGGGGTTTGTTTAaa                       >  1:5807797/1‑33
                                  CGGGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAA    >  1:10203531/1‑35
                                  CGGGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAA    >  1:11350703/1‑35
                                  CGGGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAA    <  1:11869863/35‑1
                                  CGGGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAA    >  1:13379784/1‑35
                                  CGGGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAA    >  1:15057937/1‑35
                                  CGGGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAA    <  1:4557813/35‑1
                                  CGGGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAA    >  1:19998198/1‑35
                                  CGGGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAA    <  1:19610090/35‑1
                                   GGGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAAT   >  1:14144553/1‑35
                                   GGGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAAT   >  1:2760637/1‑35
                                   GGGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAAT   <  1:9627458/35‑1
                                    GGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAATT  <  1:5249767/35‑1
                                    GGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAATT  <  1:3395061/35‑1
                                    GGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAATT  <  1:7434416/35‑1
                                    GGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAATT  >  1:18727524/1‑35
                                    GGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAATT  <  1:19018367/35‑1
                                    GGGGTTTGTTTATTTCTACGAGGTGCAGGGCAATT  >  1:15312742/1‑35
                                                                       
AGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2174981‑2175017
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggGGGTTTGTTTATTTCTGCGAGGTGCAGGGCAATT  <  REL606/4351424‑4351391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.