New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 947579 = | 44 (0.430) | 9 (0.090) | 4/46 | NT | 13.7% | coding (442/1767 nt) | cydD | fused cysteine transporter subunits of ABC superfamily: membrane component/ATP‑binding component |
? | REL606 | = 3484563 | 71 (0.720) | coding (887/1017 nt) | rtcA | RNA 3'‑terminal‑phosphate cyclase |
Only 100 of 121 total aligned reads displayed.
GCATGAGGGATGGGCGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGC > REL606/3484529‑3484597 | gCATGAGGGATGGGCGACCGTAAATTCCCCCgcgc > 1:19532754/1‑35 (MQ=255) gCATGAGGGATGGGCGACCGTAAATTCCCCCgcgc > 1:17319035/1‑35 (MQ=255) cATGAGGGATGGGCGACCGTAAATTCCCCCGCGCc < 1:8169128‑M2/35‑2 (MQ=255) cATGAGGGATGGGCGACCGTAAATTCCCCCGCGCc > 1:16528948‑M2/1‑34 (MQ=255) cATGAGGGATGGGCGACCGTAAATTCCCCCGCGCc < 1:14568140‑M2/35‑2 (MQ=255) aTGAGGGATGGGCGACCGTAAATTCCCCCGcgccc < 1:8518292/35‑1 (MQ=255) aTGAGGGATGGGCGACCGTAAATTCCCCCGcgccc < 1:1146710/35‑1 (MQ=255) tGAGGGATGGGCGACCGTAAATTCCCCCGcgccct > 1:6289445/1‑34 (MQ=255) tGAGGGATGGGCGACCGTAAATTCCCCCGcgcccg < 1:10548660/35‑1 (MQ=255) tGAGCGATGGGCGACCGTAAATTCCCCCGcgcccg > 1:10464501/1‑35 (MQ=255) gAGGGATGGGCGACCGTAAATTCCCCCGcgcccgc > 1:8065925/1‑35 (MQ=255) gAGGGATGGGCGACCGTAAATTCCCCCGcgcccgc < 1:19374043/35‑1 (MQ=255) gAGGGATGGGCGACCGTAAATTCCCCCGcgcccgc > 1:11554370/1‑35 (MQ=255) gAGGGATGGGCGACCGTAAATTCCCCCGcgcccgc < 1:1162303/35‑1 (MQ=255) aGGGATGGGCGACCGTAAATTCCCCCGcgcccgcc > 1:9896588/1‑35 (MQ=255) aGGGATGGGCGACCGTAAATTCCCCCGcgcccgcc > 1:11693094/1‑35 (MQ=255) gggATGGGCGACCGTAAATTCCCCCGCGCCCGCCa < 1:4739273/35‑1 (MQ=255) gggATGGGCGACCGTAAATTCCCCCGCGCCCGCCa > 1:5877417/1‑35 (MQ=255) gggATGGGCGACCGTAAATTCCCCCGCGCCCGCCa < 1:17189534/35‑1 (MQ=255) gggATGGGCGACCGTAAATTCCCCCGCGCCCGCCa > 1:9878340/1‑35 (MQ=255) ggATGGGCGACCGTAAATTCCCCCGCGCCCGCCAg < 1:15875635/35‑1 (MQ=255) ggATGGGCGACCGTAAATTCCCCCGCGCCCGCCAg < 1:1535891/35‑1 (MQ=255) ggATGGGCGACCGTAAATTCCCCCGCGCCCGCCAg < 1:20318456/35‑1 (MQ=255) ggATGGGCGACCGTAAATTCCCCCGCGCCCGCCAg < 1:6033656/35‑1 (MQ=255) gATGGGCGACCGTAAATTCCCCCGCGCCCGCCAgc > 1:11761012/1‑35 (MQ=255) gATGGGCGACCGTAAATTCCCCCGCGCCCGCCAgc > 1:15201067/1‑35 (MQ=255) aTGGGCGACCGTAAATTCCCCCGCGCCCGCCAgcg > 1:680719/1‑35 (MQ=255) aTGGGCGACCGTAAATTCCCCCGCGCCCGCCAgcg < 1:4268141/35‑1 (MQ=255) aTGGGCGACCGTAAATTCCCCCGCGCCCGCCAgcg > 1:18197404/1‑35 (MQ=255) gggCGACCGTAAATTCCCCCGCGCCCGCCAGCGcc > 1:12325869/1‑35 (MQ=255) gggCGACCGTAAATTCCCCCGCGCCCGCCAGCGcc > 1:10922809/1‑35 (MQ=255) gCGACCGTAAATTCCCCCGCGCCCGCCAGCGCCAt > 1:12629405/1‑35 (MQ=255) gCGACCGTAAATTCCCCCGCGCCCGCCAGCGCCAt < 1:13845245/35‑1 (MQ=255) cGACCGTAAATCCCCCCGCGCCCGCCAGCGCCATc < 1:8853666/35‑1 (MQ=255) gACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCg > 1:8013993/1‑35 (MQ=255) gACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCg > 1:4700800/1‑35 (MQ=255) cccGTAAATCCCCCCGCGCCCGCCAGCGCCATCgg < 1:16198192/34‑1 (MQ=255) cccGTAAATCCCCCCGCCCCCGCCAGCGCCATCgg < 1:17433309/34‑1 (MQ=25) aCCGTAAATTCCCCCGCGCCCGCCAGCGCCATCgg > 1:18290097/1‑35 (MQ=255) aCCGTAAATTCCCCCGCGCCCGCCAGCGCCATCgg > 1:13690850/1‑35 (MQ=255) aCCGTAAATTCCCCCGCGCCCGCCAGCGCCATCgc > 1:16463568/1‑34 (MQ=255) ccttAAATCCCCCCGCCCCCGCCAGCGCCATCGGt < 1:18639295/32‑1 (MQ=21) ccGTAAATTCCCCCGCGCCCGCCAGCGCCATCggc > 1:17551189/1‑34 (MQ=255) ccGTAAATTCCCCCGCGCCCGCCAGCGCCATCggc > 1:11843867/1‑34 (MQ=255) ccGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGt > 1:16848633/1‑35 (MQ=255) ccGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGt > 1:11316087/1‑35 (MQ=255) ccGTAAATTCCCCCGCGCCCGCAAGCGCCATCGGt < 1:1343848/35‑1 (MQ=255) ccGTAAATCCCCCCGCGCCCGCCAGCGCCATCGGt < 1:10552177/35‑1 (MQ=255) cGTAAATCCCCCCGCGCCCGCCAGCGCCATCGGTa < 1:6051979/35‑1 (MQ=255) gTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAg > 1:6190682/1‑35 (MQ=255) gTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAg > 1:7833129/1‑35 (MQ=255) gTAAATTCCCCCGCGCCCGCCAGCGCCATCGGGAg > 1:11485375/1‑35 (MQ=255) gTAAATCCCCCCGCCCCCGCCAGCGCCATCGGTAg < 1:12604994/35‑1 (MQ=25) tAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAgg > 1:16627672/1‑34 (MQ=255) tAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAgg > 1:7033035/1‑34 (MQ=255) tAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGc > 1:5842584/1‑35 (MQ=255) tAAATCCCCCCGCCCCCGCCAGCGCCATCGGTAGc < 1:19382842/35‑1 (MQ=25) tAAATCCCCCCGCCCCCGCCAGCGCCATCGGTAGc < 1:5298487/35‑1 (MQ=25) aaaTTCCCCCGCGCCCGCCAGCGCCATCGGTAgga > 1:1927270/1‑33 (MQ=255) aaaTTCCCCCGCGCCCGCCAGCGCCATCGGTAgga > 1:1213371/1‑33 (MQ=255) aaaTTCCCCCGCGCCCGCCAGCGCCATCGGTAGCa > 1:16305335/1‑35 (MQ=255) taTTCCCCCCTG‑CCGCCAGCGACATTGGAAGCAca < 1:3718917/34‑2 (MQ=25) aaTTCCCCCGCGCCCGCCAGCGCCATCGGTAGCAc > 1:12051005/1‑35 (MQ=255) aaTCCCCCCGCGCCCGCCAGCGCCATCGGTAGCAc < 1:6480980/35‑1 (MQ=255) aaTCCCCCCGCGCCCGCCAGCGCCATCGGTAGCAc < 1:961209/35‑1 (MQ=255) aaTCCCCCCGCGCCCGCCAGCGCCATCGGTAGCAc < 1:12438760/35‑1 (MQ=255) atccccccGCCCCCGCCAGCGCCATCGGTAGCAcc < 1:5431069/32‑1 (MQ=25) ttCCCCCGTG‑CCGCCAGCGACATTGGAAGCAcaaa < 1:10524173/35‑4 (MQ=25) tccccccCCCCCCGCCAGCGCCATCGGTAGCACCa < 1:8688848/33‑1 (MQ=25) tccccacGCCCCCGCCAGCGCCATCGGTAGAACCa < 1:13522376/33‑1 (MQ=18) cccccGCGCCCGCCAGCGCCATCGGTAGCACCAGt < 1:2512668/35‑1 (MQ=255) cccccGCCCctgccagcgccatttgcggcagatag > 1:8142361‑M2/1‑9 (MQ=255) cccccCCCCCCGCCAGCGCCATCGGTAGCACCAGt < 1:4908542/35‑1 (MQ=37) cccccCCCCCCGCCAGCGCCATCGGTAGCACCAGt < 1:13802221/35‑1 (MQ=37) ccccGCGCCCGCCAGCGCCATCGGTAGGACCAgct > 1:15154795/1‑33 (MQ=37) ccccGCGCCCGCCAGCGCCATCGGTAGCACCAGtt < 1:11438087/35‑1 (MQ=255) ccccGCGCACGCCAGCGCCATCGGTAGCACCAGtt < 1:7211966/35‑1 (MQ=255) ccccGCCCctgccagcgccatttgcggcagatagc > 1:7955494‑M2/1‑8 (MQ=255) ccccGCCCctgccagcgccatttgcggcagatagc > 1:7841236‑M2/1‑8 (MQ=255) ccccGCCCctgccagcgccatttgcggcagatagc > 1:85370‑M2/1‑8 (MQ=255) cccGCGCCCGCCAGCGCCATCGGTAGCCCCAGCTg > 1:3907659/1‑35 (MQ=25) cccGCCCctgccagcgccatttgcggcagatagcg > 1:8993110‑M2/1‑7 (MQ=255) cccGCCCctgccagcgccatttgcggcagatagcg > 1:12936375‑M2/1‑7 (MQ=255) ccGCCCctgccagcgccatttgcggcagatagcgt > 1:15578649‑M2/1‑6 (MQ=255) ccGCCCctgccagcgccatttgcggcagatagcgt > 1:7857771‑M2/1‑6 (MQ=255) cgcgCCCGCCAGCGCCATCGGTAGCACCAGTTGGt < 1:937433/35‑1 (MQ=255) cgccCctgccagcgccatttgcggcagatagcgtg > 1:12107323‑M2/1‑5 (MQ=255) gcgcCCGCCAGCGCCATCGGTAGCACCAGTTGGTc < 1:11217639/35‑1 (MQ=255) acccctgccagcgccatttgcggcagatagcgtgc > 1:1819377‑M2/4‑4 (MQ=255) acccctgccagcgccatttgcggcagatagcgtgc > 1:19333036‑M2/4‑4 (MQ=255) cccccgccAGCGCCATCGGTAGCACCAGTTGGTCa < 1:16092491/33‑1 (MQ=255) gcccgccAGCGCCATCGGTAGGACCCGTTTGTTAg > 1:17402227/1‑35 (MQ=16) gcccgccAGCGCCATCGGTAGCACCAGTTGGTCAg < 1:1823273/35‑1 (MQ=255) gcccgccAGCGCCATCGGTAGCACCAGTTGGTCAg < 1:12893617/35‑1 (MQ=255) ccctgccagcgccatttgcggcagatagcgtgcat > 1:7648641‑M2/2‑2 (MQ=255) ccctgccagcgccatttgcggcagatagcgtgcat > 1:434466‑M2/2‑2 (MQ=255) cctgccagcgccatttgcggcagatagcgtgcata > 1:2678884‑M2/1‑1 (MQ=255) cctgccagcgccatttgcggcagatagcgtgcata > 1:2862917‑M2/1‑1 (MQ=255) cctgccagcgccatttgcggcagatagcgtgcata > 1:4216318‑M2/1‑1 (MQ=255) cccgccAGCGCCATCGGTAGCACCAGTTGGTCAGc < 1:16208435/35‑1 (MQ=255) | GCATGAGGGATGGGCGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGC > REL606/3484529‑3484597 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |