New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 741667 =102 (0.990)24 (0.310) 5/36 NT 25.9% coding (2171/2802 nt) sucA alpha‑ketoglutarate decarboxylase
?REL606 = 1476120 81 (0.790)coding (71/1176 nt) ydcO predicted benzoate transporter

Only 100 of 184 total aligned reads displayed.

GGCCTGGTGATGTTGCTGCCGCACGGTTACGAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGTCTGGAA  >  REL606/741633‑741701
                                  |                                  
ggCCTGGTGATGTTGCTGCCGCACGGTTACGAAgg                                    <  1:6127908/35‑1 (MQ=255)
ggCCTGGTGATGTTGCTGCCGCACGGTTACGAAgg                                    <  1:6099764/35‑1 (MQ=255)
ggCCTGGTGATGTTGCTGCCGCACGGGTAAGAAgg                                    >  1:8654094/1‑35 (MQ=37)
 gCCTGGTGATGTTGCTGCCGCACGGTTACGAAggg                                   >  1:1023842/1‑35 (MQ=255)
 gCCTGGTGATGTTGCTGCCGCACGGTTACGAAggg                                   <  1:11590701/35‑1 (MQ=255)
  ccTGGTGATGTTGCTGCCGCACGGTTACGAAgggg                                  <  1:16997245/35‑2 (MQ=255)
  ccTGGTGATGTTGCTGCCGCACGGTTACGAAGGGc                                  >  1:15566200/1‑35 (MQ=255)
   cTGGTGATGTTGCTGCCGCACGGTTACGAAGGGCa                                 >  1:18870032/1‑35 (MQ=255)
   cTGGTGATGTTGCTGCCGCACGGTTACGAAGGGCa                                 >  1:18980255/1‑35 (MQ=255)
   cTGGTGATGTTGCTGCCGCACGGTTACGAAGGGCa                                 <  1:18765481/35‑1 (MQ=255)
   cTGGTGATGTTGCTGCCGCACGGTTACGAAGGGCa                                 >  1:17966892/1‑35 (MQ=255)
    tGGTGATGTTGCTGCCGCACGGTTACGAAGGGCAg                                >  1:15176865/1‑35 (MQ=255)
    tGGTGATGTTGCTGCCGCACGGTTACGAAGGGCAg                                <  1:16765689/35‑1 (MQ=255)
     ggTGATGTTGCTGCCGCACGGTTACGAAGGGCAgg                               >  1:13054935/1‑35 (MQ=255)
     ggTGATGTTGCTGCCGCACGGTTACGAAGGGCAgg                               <  1:64621/35‑1 (MQ=255)
      gTGATGTTGCTGCCGCACGGTTACGAAGGGCAggg                              >  1:6846932/1‑35 (MQ=255)
      caccagattattgccgctgaacaacaacGGCAggg                              <  1:13154311‑M1/7‑1 (MQ=255)
      caccagattattgccgctgaacaacaacGGCAggg                              <  1:2506037‑M1/7‑1 (MQ=255)
      caccagattattgccgctgaacaacaacGGCAggg                              <  1:7406187‑M1/7‑1 (MQ=255)
      caccagattattgccgctgaacaacaacGGCAggg                              <  1:10926945‑M1/7‑1 (MQ=255)
       tGATGTTGCTGCCGCACGGTTACGAAGGGCAgggg                             <  1:9073436/35‑1 (MQ=255)
       accagattattgccgctgaacaacaacGGCagggc                             <  1:2759880‑M1/8‑2 (MQ=255)
       accagattattgccgctgaacaacaacGGCAgggg                             <  1:16407744‑M1/8‑1 (MQ=255)
        gaggTTGCTGCCGCACGGTTACGAAGGGCAGGGGc                            <  1:7315354/32‑1 (MQ=255)
        gATGTTGCTGCCGCACTGTTACGAAGGGCAggggg                            >  1:18439061/1‑34 (MQ=38)
        gATGTTGCTGCCGCACGGTTACGAAGGGCCGGGGc                            >  1:19312602/1‑35 (MQ=255)
        gATGTTGCTGCCGCACGGTTACGAAGGGCAGGGGc                            <  1:2203881/35‑1 (MQ=255)
        ccagattattgccgctgaacaacaacGgcaggcgc                            <  1:3954015‑M1/9‑4 (MQ=255)
        ccagattattgccgctgaacaacaacGGcagggcc                            <  1:3538475‑M1/9‑3 (MQ=255)
         cagattattgccgctgaacaacaacGGCAGGGGcc                           <  1:8215369‑M1/10‑1 (MQ=255)
         aTGTTGCTGCCGCACGGTTACGAAGGGTAGGGGcc                           <  1:10025689/35‑1 (MQ=255)
         aTGTTGCTGCCGCACGGTTACGAAGGGCAGGGGcc                           <  1:3723726/35‑1 (MQ=255)
         aTGTTGCTGCCGCACGGTTACGAAGGGCAGGGGcc                           <  1:11515008/35‑1 (MQ=255)
         aTGTTGCTGCCGCACGGTTACGAAGGGCAGGGGcc                           >  1:15706145/1‑35 (MQ=255)
          tGTTGCTGCCGCATGGTTACGAAGGGCAGGGGcct                          >  1:9954882/1‑34 (MQ=255)
          tGTTGCTGCCGCATGGTTACGAAGGGCAGGGGcct                          >  1:9275465/1‑34 (MQ=255)
          tGTTGCTGCCGCACGGTTACGAAGGGCAGGGGCCn                          <  1:19695376/35‑1 (MQ=255)
          tGTTGCTGCCGCACGGTTACGAAGGGCAGGGGCCg                          >  1:15794545/1‑35 (MQ=255)
          tGTTGCTGCCGCACGGTTACGAAGGGCAGGGGCCg                          >  1:4263911/1‑35 (MQ=255)
          agattattgccgctgaacaacaacGGCAGGGCCCg                          <  1:12276202‑M1/11‑1 (MQ=255)
           gattattgccgctgaacaacaacGGCAGGGCCCgg                         <  1:45607‑M1/12‑1 (MQ=255)
           gTTCCTGCCGCACGGTTACGAAGGGCAGGGGCCgg                         <  1:15460119/35‑1 (MQ=255)
            ttGCTGCCGCACGGTTACGAAGGGCAGGGGCCGGa                        >  1:2640626/1‑35 (MQ=255)
            ttGCTGCCGCACGGTTACGAAGGGCAGGGGCCGGa                        >  1:14032258/1‑35 (MQ=255)
            attattgccgctgaacaacaacGGCAGGGGCTGGa                        <  1:20123354‑M1/13‑1 (MQ=255)
            attattgccgctgaacaacaacGGCAGGGGCCGGa                        <  1:5857886‑M1/13‑1 (MQ=255)
            attattgccgctgaacaacaacGGCAGGGCCCGGa                        <  1:841073‑M1/13‑1 (MQ=255)
             tgctgcCGCACGGTTACGAAGGGCAGGGGCCGGAg                       >  1:6005058/1‑35 (MQ=255)
              tattgccgctgaacaacaacGGCAGGGGCCggaac                      <  1:18596170‑M1/15‑3 (MQ=255)
              gctgcCGCACGGTTACGAAGGGCAGGGGCCGGAGc                      >  1:13240614/1‑35 (MQ=255)
              gctgcCGCACGGTTACGAAGGGCAGGGGCCGGAGc                      >  1:15098713/1‑35 (MQ=255)
              gctgcCGCACGGTTACGAAGGGCAGGGGCCGGAGc                      >  1:9711785/1‑35 (MQ=255)
               ctgcCGCACGGTTACGAAGGGCAGGGGCCGGAGCa                     >  1:15845567/1‑35 (MQ=255)
               ctgcCGCACGGTTACGAAGGGCAGGGGCCGGAGCa                     >  1:903353/1‑35 (MQ=255)
                tgcCGCACGGTTACGAAGGGCAGGGGCCGGAGCAc                    >  1:17655406/1‑35 (MQ=255)
                 gcCGCACGGTTACGAAGGGCAGGGGCCGGAGCAct                   <  1:7985888/35‑1 (MQ=255)
                  ccGCACGGTTACGAAGGGCAGGGGCCGGAGCActc                  <  1:15429073/35‑1 (MQ=255)
                    gCACGGTTACGAAGGGCAGGGGCCGGAGCActcct                >  1:7886803/1‑35 (MQ=255)
                     cACGGTTACGAAGGGCAGGGGCCGGAGCActcctc               <  1:20477711/35‑1 (MQ=255)
                      aCGGTTACGAAGGGCAGGGGCCGGAGCACtcctcc              <  1:14427221/35‑1 (MQ=255)
                      aCGGTTACGAAGGGCAGGGGCCGGAGCACtcctcc              <  1:9187444/35‑1 (MQ=255)
                       cagTTACGAAGGGCAGGGGCCGGAGCACTCCTCcg             <  1:6993808/33‑1 (MQ=255)
                       cGGTTACGAAGGGCAGGGGCCGGATCACTCCTCcg             >  1:4107287/1‑35 (MQ=255)
                       cGGTTACGAAGGGCAGGGGCCGGAGCACTCCTCcg             >  1:17223040/1‑35 (MQ=255)
                       cGGTTACGAAGGGCAGGGGCCGGAGCACTCCTCcg             <  1:13500018/35‑1 (MQ=255)
                       cGGTTACGAAGGGCAGGGGCCGGAGCACTCCTCcg             >  1:4930738/1‑35 (MQ=255)
                        ggTTACGAAGGGCAGGGGCCGGAGCACTCCTCcgc            >  1:5553135/1‑35 (MQ=255)
                        ggTTACGAAGGGCAGGGGCCGGAGCACTCCTCcgc            <  1:11429747/35‑1 (MQ=255)
                        ggTTACGAAGGGCAGGGGCCGGAGCACTCCTCcgc            <  1:18960561/35‑1 (MQ=255)
                        ggTTACGAAGGGCAGGGGCCGGAGCACTCCTCcgc            >  1:17394002/1‑35 (MQ=255)
                         gTTACGAAGGGCAGGGGCCGGAGCACTCCTCcgcg           >  1:12090742/1‑35 (MQ=255)
                         gTTACGAAGGGCAGGGGCCGGAGCACTCCTCcgcg           >  1:11281046/1‑35 (MQ=255)
                         gTTACGAAGGGCAGGGGCCGGAGCACTCCTCcgcg           <  1:15600523/35‑1 (MQ=255)
                         gTTACGAAGGGCAGGGGCCGGAGCACTCCTCcgcg           >  1:16093785/1‑35 (MQ=255)
                          ttACGAAGGGCAGGGGCCGGAGCACTCCTCcgcgc          <  1:9570832/35‑1 (MQ=255)
                            aCGAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGt        >  1:3845368/1‑35 (MQ=255)
                            aCGAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGt        <  1:3081871/35‑1 (MQ=255)
                            aCGAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGt        >  1:7819551/1‑35 (MQ=255)
                             cGAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGTc       >  1:16149488/1‑35 (MQ=255)
                             cGAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGTc       <  1:20194562/35‑1 (MQ=255)
                             cGAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGTc       <  1:17773443/35‑1 (MQ=255)
                             cGAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGTc       >  1:19245446/1‑35 (MQ=255)
                              gAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGTCt      >  1:12114604/1‑35 (MQ=255)
                              gAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGTCt      >  1:11736074/1‑35 (MQ=255)
                              gAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGTCt      >  1:13600417/1‑35 (MQ=255)
                              gAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGTCt      >  1:19345174/1‑35 (MQ=255)
                              gAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGTCt      >  1:16272995/1‑35 (MQ=255)
                               aaGGGCAGGGGCCGGAGCACTCCTCCGCGCGTCTg     >  1:16157486/1‑35 (MQ=255)
                               aaGGGCAGGGGCCGGAGCACTCCTCCGCGCGTCTg     >  1:10599679/1‑35 (MQ=255)
                               aaGGGCAGGGGCCGGAGCACTCCTCCGCGCGTCTg     <  1:5013495/35‑1 (MQ=255)
                                aGGGCAGGGGCCGGAGCACTCCTCCGCGCGTCTgg    <  1:15020626/35‑1 (MQ=255)
                                aGGGCAGGGGCCGGAGCACTCCTCCGCGCGTCTgg    <  1:3416954/35‑1 (MQ=255)
                                 gggCAGGGGCCGGAGCACTCCTCCGCGCGTCTGGa   <  1:14777031/35‑1 (MQ=255)
                                 gggCAGGGGCCGGAGCACTCCTCCGCGCGTCTGGa   >  1:8818909/1‑35 (MQ=255)
                                 gggCAGGGGCCGGAGCACTCCTCCGCGCGTCTGGa   <  1:7733581/35‑1 (MQ=255)
                                 gggCAGGGGCCGGAGCACTCCTCCGCGCGTCTGGa   <  1:17165245/35‑1 (MQ=255)
                                 gggCAGGGGCCGGAGCACTCCTCCGCGCGTCTGGa   >  1:6309873/1‑35 (MQ=255)
                                  ggCAGGGGCCGGAGCACTCCTCCGCGCGTCTGGaa  <  1:8031229/35‑1 (MQ=255)
                                  ggCAGGGGCCGGAGCACTCCTCCGCGCGTCTGGaa  <  1:7658731/35‑1 (MQ=255)
                                  ggCAGGGGCCGGAGCACTCCTCCGCGCGTCTGGaa  <  1:3538746/35‑1 (MQ=255)
                                  |                                  
GGCCTGGTGATGTTGCTGCCGCACGGTTACGAAGGGCAGGGGCCGGAGCACTCCTCCGCGCGTCTGGAA  >  REL606/741633‑741701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.