New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 351749069 (0.670)13 (0.130) 8/48 NT 14.7% coding (10/1743 nt) ggt gamma‑glutamyltranspeptidase periplasmic precursor
?REL606 = 4266659 82 (0.800)intergenic (‑355/‑38) acs/nrfA acetyl‑coenzyme A synthetase/nitrite reductase, formate‑dependent, cytochrome

GAGCAGCAATGGCCACCCGGCGTAAAAACGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3517457‑3517490
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTTTTTATTGTTTTT  <  REL606/4266659‑4266644
                                                  
GAGCAGCAATGGCCACCCGGCGTAAAAACGTCGGG                 >  1:18039722/1‑35
 AGCAGCAATGGCCACCCGGCGTAAAAACGTCGGGG                >  1:18957227/1‑35
 AGCAGCAATGGCCACCCGGCGTAAAAACGTCGGGG                >  1:16473555/1‑35
  GCAGCAATGGCCACCCGGCGTAAAAACGTCGGGGT               >  1:2775594/1‑35
  GCAGCAATGGCCACCCGGCGTAAAAACGTCGGGGT               >  1:20453676/1‑35
   CAGCAATGGCCACCCGGCGTAAAAACGTCGGGGTT              >  1:11883899/1‑35
    AGCAATGGCCACCCGGCGTAAAAACGTCGGGGTTT             >  1:18678355/1‑35
    AGCAATGGCCACCCGGCGTAAAAACGTCGGGGGTT             >  1:17697441/1‑35
    AGCAATGGCCACCCGGCGTAAAAACGTCGGGGGTT             >  1:2412569/1‑35
    AGCAATGGCCACCCGGCGTAAAAACGTCGGGGGTT             >  1:11918581/1‑35
     GCAATGGCCACCCGGCGTAAAAACGTCGGGGGTTT            >  1:18674071/1‑35
      CAATGGCCACCCGGCGTAAAAACGTCGGGGTTTTT           >  1:8605776/1‑35
      CAATGGCCACCCGGCGTAAAAACGTCGGGGGTTTT           >  1:15700351/1‑35
      CAATGGCCACCCGGCGTAAAAACGTCGGGGGTTTT           >  1:12190113/1‑35
         TGGCCACCCGGCGTAAAAACGTCGGGTTTTTTATT        >  1:9170726/1‑35
         TGGCCACCCGGCGTAAAAACGTCGGGGTTTTTttc        >  1:2285395/1‑32
         TGGCCACCCGGCGTAAAAACGTCGGGGTTTTTTTT        >  1:15193966/1‑35
          GGCCACCCGGCGTAAAAACGTCGGGGGTTTTATTG       >  1:4371276/1‑35
            CCACCCGGCGTAAAAACGTCGGGGTTTTTTTTGTT     >  1:17312233/1‑35
            CCACCCGGCGTAAAAACGTCGGGGTTTTTATCGTT     >  1:4209508/1‑35
             CACCCGGCGTAAAAACGTCGGGGTTTTCATTGTTT    >  1:14343073/1‑35
              ACCCGGCGTAAAAACGTCGGGGTTTTTATTGTTTT   >  1:4880736/1‑35
               CCCGGCGTAAAAACGTCGGGGTTTTTATTGTTTTT  >  1:8887032/1‑35
                                                  
GAGCAGCAATGGCCACCCGGCGTAAAAACGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3517457‑3517490
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTTTTTATTGTTTTT  <  REL606/4266659‑4266644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.