New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 290073192 (0.900)9 (0.110) 3/40 NT 13.3% coding (82/771 nt) yqeC hypothetical protein
?REL606 4370910 = 41 (0.480)intergenic (+97/+173) glyY/yjeS tRNA‑Gly/predicted Fe‑S electron transport protein

CTGACAAACTCTTGTAAACAGAGTTATCCACAGCCTCAGGCTGTAATCTTAATTTCAAAGAAACTTCGC  >  REL606/4370876‑4370944
                                  |                                  
ctGACAAACTCTTGTAAACAGAGTTATCCACAGcc                                    >  1:14503027/1‑35 (MQ=255)
ctGACAAACTCTTGTAAACAGAGTTATCCACAGcc                                    >  1:16152302/1‑35 (MQ=255)
ctGACAAACTCTTGTAAACAGAGTTATCCACAGcc                                    >  1:6392616/1‑35 (MQ=255)
 tGACAAACTCTTGTAAACAGAGTTATCCACATCCt                                   >  1:13092456/1‑35 (MQ=255)
   aCAAACTCTTGTAAACAGAGTTATCCACAGCCTCa                                 >  1:12496792/1‑35 (MQ=255)
   aCAAACTCTTGTAAACAGAGTTATCCACAGCCTCa                                 >  1:12465185/1‑35 (MQ=255)
   aCAAACTCTTGTAAACAGAGTTATCCACAGCCTCa                                 >  1:4193749/1‑35 (MQ=255)
    cAAACTCTTGTAAACAGAGTTATCCACAGCCTCAg                                >  1:12008267/1‑35 (MQ=255)
    cAAACTCTTGTAAACAGAGTTATCCACAGCCTCAg                                >  1:17941109/1‑35 (MQ=255)
     aaaCTCTTGTAAACAGAGTTATCCACAGCCTCAgg                               >  1:6276041/1‑35 (MQ=255)
     aaaCTCTTGTAAACAGAGTTATCCACAGCCTCAgg                               >  1:1798033/1‑35 (MQ=255)
      aaCTCTTGTAAACAGAGTTATCCACAGCCTCAGGc                              >  1:17982936/1‑35 (MQ=255)
      aaCTCTTGTAAACAGAGTTATCCACAGCCTCAGGc                              >  1:1629982/1‑35 (MQ=255)
      aaCTCTTGTAAACAGAGTTATCCACAGCCTCAGGc                              >  1:10516339/1‑35 (MQ=255)
       aCTCTTGTAAACAGAGTTATCCACAGCCTCAGGCt                             >  1:2371651/1‑35 (MQ=255)
       aCTCTTGTAAACAGAGTTATCCACAGCCTCAGGCt                             >  1:4602716/1‑35 (MQ=255)
       aCTCTTGTAAACAGAGTTATCCACAGCCTCAGGCt                             >  1:7519926/1‑35 (MQ=255)
       aCTCTTGTAAACAGAGTTATCCACAGCCTCAGGCt                             >  1:11258654/1‑35 (MQ=255)
       aCTCTTGTAAACAGAGTTATCCACAGCATCAGGCt                             <  1:1478261/35‑1 (MQ=255)
        ctctTGTAAACAGAGTTATCCACAGCCTCAGGCTg                            >  1:20563472/1‑35 (MQ=255)
         tctTGTAAACAGAGTTATCCACAGCCTCAGGCTgg                           >  1:14947289/1‑34 (MQ=255)
          ctTGTAAACAGAGTTATCCACAGCCTCAGGCTgga                          >  1:2919288/1‑33 (MQ=255)
          ctTGTAAACAGAGTTATCCACAGCCTCAGGCTGTa                          >  1:20028942/1‑35 (MQ=255)
            tGTAAACAGAGTTATCCACAGCCTCAGGCTGGAAt                        >  1:2787125/1‑35 (MQ=255)
              tAAACAGAGTTATCCACAGCCTCAGGCTGGAATCt                      >  1:4406906/1‑35 (MQ=255)
               aaaCAGATTTACCCCCAGCCTCAGGCTGTAATCtt                     <  1:12427220/35‑1 (MQ=25)
               aaaCAGAGTTATCCACAGCCTCAGGCTGGAATCtt                     >  1:14863983/1‑35 (MQ=255)
               aaaCAGAGTTATCCACAGCCTCAGGCTGGAATCtt                     >  1:1177123/1‑35 (MQ=255)
               aaaCAGAGTTATCCACAGCCTCAGGCTGGAATCtt                     >  1:18122637/1‑35 (MQ=255)
               aaaCAGAGTTATCCACAGCATCAGGCTGTAATCtt                     <  1:3638277/35‑1 (MQ=255)
                aaCAGATTTCCCCCCAGCCTCAGGCTGTAATCTTa                    <  1:8149631/35‑1 (MQ=255)
                aaCAGAGTTATCCACAGCCTCAGGCTGGAATCttt                    >  1:5416286/1‑34 (MQ=255)
                 aCAGATTTCCCCCCAGCCTCAGGCTGTAATCTTaa                   <  1:3435255/35‑1 (MQ=19)
                 aCAGAGTTATCCACAGCCTCAGGCTGTAATCTTaa                   >  1:9325072/1‑35 (MQ=255)
                 aCAGAGTTATCCACAGCCTCAGGCTGTAATCTTaa                   >  1:12833530/1‑35 (MQ=255)
                 aCAGAGTTATCCACAGCCTCAGGCTGTAATCTTaa                   >  1:16356216/1‑35 (MQ=255)
                 aCAGAGTTATCCACAGCCTCAGGCTGGAATCTTaa                   >  1:9241026/1‑35 (MQ=255)
                  cAGATTTACCCCCAGCCTCAGGCTGTAATCTTAAt                  <  1:5141942/35‑1 (MQ=25)
                  cAGAGTTATCCACAGCCTCAGGCTGGAATCTTAAt                  >  1:5742557/1‑35 (MQ=255)
                  cAGAGTTATCCACAGCCTCAGGCTGGAATCTTAAt                  >  1:14122882/1‑35 (MQ=255)
                  cAGAGTTATCCACAGCCTCAGGCTGGAAACTTCAt                  >  1:17141675/1‑35 (MQ=25)
                   ggttttccccccagcCTCAGGCTGTAATCTTAAtt                 <  1:7261011‑M2/20‑1 (MQ=255)
                   ggagTCACCCCCAGCCTCAGGCTGTAATCTTAAtt                 <  1:15312093/34‑1 (MQ=21)
                   agatttccccccagcCTCAGGCTGTAATCTTAAtt                 <  1:1322952‑M2/20‑1 (MQ=255)
                   agagTTATCCACAGCCTCAGGCTGTAATCTTAAtt                 >  1:13061198/1‑35 (MQ=255)
                   agagTTATCCACAGCCTCAGGCTGGAATCTTAAtt                 >  1:7481743/1‑35 (MQ=255)
                    gagTTATCCACAGCCTCAGGCTGTAATCTTAAttt                >  1:6986629/1‑35 (MQ=255)
                     ttttccccccagcCTCAGGCTGTAATCTTAATTTc               <  1:6951668‑M2/22‑1 (MQ=255)
                     atttccccccagcCTCAGGCTGTAATCTTAATTTc               <  1:9793257‑M2/22‑1 (MQ=255)
                     atttccccccagcCTCAGGCTGTAATCTTAATTTc               <  1:2779359‑M2/22‑1 (MQ=255)
                     atttccccccagcCTCAGGCTGTAATCTTAATTTc               <  1:1331012‑M2/22‑1 (MQ=255)
                      tttccccccagcCTCAGGCTGTAATCTTAATTTCa              <  1:2296185‑M2/23‑1 (MQ=255)
                      tttccccccagcCTCAGGCTGTAATCTTAATTTCa              <  1:17567557‑M2/23‑1 (MQ=255)
                      tttacccccagcCTCAGGCTGTAATCTTAATTTCa              <  1:3037177‑M2/23‑1 (MQ=255)
                      gTTATCCACAGCCTCAGGCTGTAATCTTAATTTCa              >  1:7782870/1‑35 (MQ=255)
                      gTTATCCACAGCCTCAGGCTGGAATCTTAAtttta              >  1:11292965/1‑33 (MQ=37)
                      gTTACCCCCAGCCTCAGGCTGTAATCTTAATTTCa              <  1:7392229/35‑1 (MQ=25)
                        tacccccagcCTCAGGCTGTAATCTTAATTTCaaa            <  1:7674614‑M2/25‑1 (MQ=255)
                        tATCCACAGCCTCAGGCTGTAATCTTTATTTCaaa            >  1:6871732/1‑35 (MQ=255)
                        tATCCACAGCCTCAGGCTGGAATCTTAATTTCaaa            >  1:13998473/1‑35 (MQ=255)
                         ccccccagcCTCAGGCTGTAATCTTAATTTCAAAg           <  1:16662428‑M2/26‑1 (MQ=255)
                         ccccccagcCTCAGGCTGTAATCTTAATTTCAAAg           <  1:16732276‑M2/26‑1 (MQ=255)
                         acccccagcCTCAGGCTGTAATCTTAATTTCAAAg           <  1:97567‑M2/26‑1 (MQ=255)
                         acccccagcCTCAGGCTGTAATCTTAATTTCAAAg           <  1:17509686‑M2/26‑1 (MQ=255)
                         aTCCACAGCCTCAGGCTGGAATCTTTATTTCAAAg           >  1:9292065/1‑35 (MQ=37)
                          tCCACAGCCTCAGGCTGTAATCTTAATTTCAAAGa          >  1:3846194/1‑35 (MQ=255)
                          cccccagcCTCAGGCTGTAATCTTAATTTCAAAGa          <  1:8186920‑M2/27‑1 (MQ=255)
                          cccccagcCTCAGGCTGTAATCTTAATTTCAAAGa          <  1:5109541‑M2/27‑1 (MQ=255)
                           ccccagcCTCAGGCTGTAATCTTAATTTCAAAGaa         <  1:18180398‑M2/28‑1 (MQ=255)
                           ccccagcCTCAGGCTGTAATCTTAATTTCAAAGaa         <  1:7189374‑M2/28‑1 (MQ=255)
                           ccccagcCTCAGGCTGTAATCTTAATTTCAAAGaa         <  1:11631308‑M2/28‑1 (MQ=255)
                           ccACAGCCTCAGGCTGTAATCTTAATTTCAAAGaa         >  1:1689373/1‑35 (MQ=255)
                            cccagcCTCAGGCTGTAATCTTAATTTCAAAGaaa        <  1:385628‑M2/29‑1 (MQ=255)
                            cacaGCCTCAGGCTGGAATCTTAATTTCAAAGaaa        >  1:20451268/1‑35 (MQ=255)
                             ccagcCTCAGGCTGTAATCTTAATTTCAAAGAAAc       <  1:12059952‑M2/30‑1 (MQ=255)
                             ccagcCTCAGGCTGTAATCTTAATTTCAAAGAAAc       <  1:3149275‑M2/30‑1 (MQ=255)
                             ccagcCTCAGGCTGTAATCTTAATTTCAAAGAAAc       <  1:12299406‑M2/30‑1 (MQ=255)
                             acaGCCTCAGGCTGTAATCTTAATTTCAAAGAAAc       <  1:9250963/35‑1 (MQ=255)
                              cagcCTCAGGCTGTAATCTTAATTTCAAAGAAACt      <  1:13905647‑M2/31‑1 (MQ=255)
                              cagcCTCAGGCTGTAATCTTAATTTCAAAGAAACt      <  1:13972433‑M2/31‑1 (MQ=255)
                              cagcCTAAGGCTGTAATCTTAATTTCAAAGAAACt      <  1:15319638‑M2/31‑1 (MQ=255)
                              caGCCTCAGGCTGTAATCTTAACTTAAAAGAAACt      <  1:360640/35‑1 (MQ=38)
                               agcCTCAGGCTGTAATCTTAATTTCAAAGAAACtt     >  1:12827926‑M2/4‑35 (MQ=255)
                               agcCTCAGGCTGTAATCTTAATTTCAAAGAAACtt     <  1:19604087‑M2/32‑1 (MQ=255)
                                gcCTCAGGCTGTAATCTTAATTTCAAAGAAACTTc    <  1:2086155‑M2/33‑1 (MQ=255)
                                 cCTCAGGCTGTAATCTTAATTTCAAAGAAACTTCg   <  1:4873618‑M2/34‑1 (MQ=255)
                                 cCTCAGGCTGTAATCTTAATTTCAAAGAAACTTCg   <  1:6677884‑M2/34‑1 (MQ=255)
                                  cTCAGGCTGTAATCTTAATTTCAAAGAAACTTCgg  <  1:11503750/35‑2 (MQ=255)
                                  cTCAGGCTGTAATCTTAATTTCAAAGAAACTTCGc  <  1:7790562/35‑1 (MQ=255)
                                  cTCAGGCTGTAATCTTAATTTCAAAGAAACTTCGc  <  1:18321763/35‑1 (MQ=255)
                                  cTCAGGCTGTAATCTTAATTTCAAAGAAACTTCGc  <  1:15604065/35‑1 (MQ=255)
                                  |                                  
CTGACAAACTCTTGTAAACAGAGTTATCCACAGCCTCAGGCTGTAATCTTAATTTCAAAGAAACTTCGC  >  REL606/4370876‑4370944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.