New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3006451 =87 (0.850)9 (0.100) 4/44 NT 11.8% coding (461/819 nt) yafZ conserved protein
?REL606 4115747 = 55 (0.580)coding (1806/2181 nt) katG catalase/hydroperoxidase HPI(I)

Only 100 of 111 total aligned reads displayed.

CCGAGTCACTGCTGATCGACAAAGCACAGCAACTGACGCTGACCGCGCCGGAAATGACTGCGCTGGTGG  >  REL606/4115713‑4115781
                                  |                                  
ccGAGTCGCTGCTGATCGACAAAGCACAGCAACTg                                    <  1:392139/35‑1 (MQ=255)
ccGAGTCCCTGCTGATCGACAAAGCCCAGCAACTg                                    <  1:6362630/35‑1 (MQ=37)
ccGAGTCACTGCTGATCGACAAAGCACAGCAACTg                                    >  1:19295239/1‑35 (MQ=255)
 cGAGTCACTGCTGATCGACAAAGCACAGCAACTGa                                   >  1:5386025/1‑35 (MQ=255)
 cGAGTCACTGCTGATCGACAAAGCACAGCAACTGa                                   >  1:8956830/1‑35 (MQ=255)
  gAGTCACTGCTGATCGACAAAGCACAGCAACTGAc                                  >  1:15173886/1‑35 (MQ=255)
  gAGTCACTGCTGATCGACAAAGCACAGCAACTGAc                                  >  1:12893756/1‑35 (MQ=255)
  gAGTCACTGCTGATCGACAAAGCACAGCAACTGAc                                  >  1:8657307/1‑35 (MQ=255)
   aGTCACTGCTGATCGACAAAGCACAGCAACTGACg                                 >  1:405486/1‑35 (MQ=255)
    gTCACTGCTGATCGACAAAGCACAGCAACTGACGc                                >  1:12300659/1‑35 (MQ=255)
    gTCACTGCTGATCGACAAAGCACAGCAACTGACGc                                >  1:5210884/1‑35 (MQ=255)
     tCACTGCTGATCGACAAAGCACAGCAACTGACGCt                               >  1:2018511/1‑35 (MQ=255)
     tCACTGCTGATCGACAAAGCACAGCAACTGACGCt                               >  1:17215965/1‑35 (MQ=255)
     tCACTGCTGATCGACAAAGCACAGCAACTGACGCt                               >  1:19395079/1‑35 (MQ=255)
       aCTGCTGATCGACAAAGCACAGCAACTGACGCTGa                             >  1:18297117/1‑35 (MQ=255)
       aCTGCTGATCGACAAAGCACAGCAACTGACGCTGa                             >  1:10806971/1‑35 (MQ=255)
       aCTGCTGATCGACAAAGCACAGCAACTGACGCTGa                             >  1:16729344/1‑35 (MQ=255)
        ctgctgATCGACAAAGCACAGCAACTGACGCTGag                            >  1:16458944/1‑34 (MQ=255)
        ctgctgATCGACAAAGCACAGCAACTGACGCTGAc                            >  1:12585197/1‑35 (MQ=255)
        ctgctgATCGACAAAGCACAGCAACTGACGCTGAc                            >  1:11091307/1‑35 (MQ=255)
        ctgctgATCGACAAAGCACAGCAACTGACGCTGAc                            >  1:16242981/1‑35 (MQ=255)
         tgctgATCGACAAAGCACAGCAACTGACGCTTAcc                           >  1:19685399/1‑35 (MQ=255)
         tgctgATCGACAAAGCACAGCAACTGACGCTGAct                           >  1:17358364/1‑34 (MQ=255)
          gctgATCGACAAAGCACAGCAACTGACGCTGACcg                          >  1:10470439/1‑35 (MQ=255)
          gctgATCGACAAAGCACAGCAACTGACGCTGACcg                          >  1:14774366/1‑35 (MQ=255)
          gctgATCGACAAAGCACAGCAACTGACGCTGACcg                          >  1:1147214/1‑35 (MQ=255)
           ctgATCGACAAAGCACAGCAACTGACGCTGACcgc                         >  1:16482348/1‑35 (MQ=255)
           ctgATCGACAAAGCACAGCAACTGACGCTGACcgc                         >  1:1715268/1‑35 (MQ=255)
           ctgATCGACAAAGCACAGCAACTGACGCTGACcgc                         >  1:19298362/1‑35 (MQ=255)
            tgATCGACAAAGCACAGCAACTGACGCTGACcgcg                        >  1:5821500/1‑35 (MQ=255)
            tgATCGACAAAGCACAGCAACTGACGCTGACcgcg                        >  1:14634967/1‑35 (MQ=255)
            tgATCGACAAAGCACAGCAACTGACGCTGACcgcg                        >  1:307625/1‑35 (MQ=255)
             gATCGACAAAGCACAGCAACTGACGCTGACCgcgc                       >  1:16293648/1‑35 (MQ=255)
             gATCGACAAAGCACAGCAACTGACGCTGACCgcgc                       >  1:20155854/1‑35 (MQ=255)
              aTCGACAAAGCACAGCAACTGACGCTGACCGCGcc                      >  1:1812088/1‑35 (MQ=255)
              aTCGACAAAGCACAGCAACTGACGCTGACCGCGcc                      >  1:3823339/1‑35 (MQ=255)
               tCGACAAAGCACAGCAACTGACGCTGACCGCGCCg                     >  1:5239795/1‑35 (MQ=255)
               tCGACAAAGCACAGCAACTGACGCTGACCGCGCCg                     >  1:7530607/1‑35 (MQ=255)
               tCGACAAAGCACAGCAACTGACGCTGACCGCGCCg                     >  1:18860003/1‑35 (MQ=255)
                cGACAAAGCACAGCAACTTACGCTGACCGCGCCgg                    >  1:18027845/1‑35 (MQ=255)
                cGACAAAGCACAGCAACTGACGCTGACCGCGCCgg                    >  1:9203126/1‑35 (MQ=255)
                cGACAAAGCACAGCAACTGACGCTGACCGCGCCgg                    >  1:16601262/1‑35 (MQ=255)
                cGACAAAGCACAGCAACTGACGCTGACCGCGCCgg                    >  1:12704801/1‑35 (MQ=255)
                  aCAAAGCACAGCAACTGACGCTGACCGCGCCGGaa                  >  1:2915085/1‑35 (MQ=255)
                   cAAAGCACAGCAACTGACGCTGACCGCGCCGGaaa                 >  1:7718233/1‑35 (MQ=255)
                   cAAAGCACAGCAACTGACGCTGACCGCGCCGGaaa                 >  1:6688063/1‑35 (MQ=255)
                   aaacccccaccacctGACGCTGACCGCGCCGGaaa                 <  1:11358228‑M2/20‑1 (MQ=255)
                   aaacccccaccacctGACGCTGACCGCGCCGGaaa                 <  1:2578947‑M2/20‑1 (MQ=255)
                    aacccccaccacctGACGCTGACCGCGCAGGAAAt                <  1:482906‑M2/21‑1 (MQ=255)
                    aaaGCACAGCAACTGACGCTGACCGCGCCGGAAAt                >  1:852081/1‑35 (MQ=255)
                     acccccaccccctGACGCTGACCGCGCCGGAAATg               <  1:17304241‑M2/22‑1 (MQ=255)
                     aaGCACAGCAACTGACGCTGACCGCGCCGGAAATg               >  1:11373436/1‑35 (MQ=255)
                      aGCACAGCAACTGACGCTGACCGCGCCGGAAATGa              >  1:15357483/1‑35 (MQ=255)
                       gCACAGCAACTGACGCTGACCGCGCCGGAAATGAc             >  1:106834/1‑35 (MQ=255)
                       gCACAGCAACTGACGCTGACCGCGCCGGAAATGAc             >  1:191268/1‑35 (MQ=255)
                        cacaGCAACTGACGCTGACCGCGCCGGAAATGACt            >  1:17422070/1‑35 (MQ=255)
                        cacaGCAACTGACGCTGACCGCGCCGGAAATGACt            >  1:2932268/1‑35 (MQ=255)
                        cacaGCAACTGACGCTGACCGCGCCGGAAATGACt            >  1:8565593/1‑35 (MQ=255)
                         ccaccacctGACGCTGACCGCGCCGGAAATGACTg           <  1:7306515‑M2/26‑1 (MQ=255)
                         ccaccacctGACGCTGACCGCGCCGGAAATGACTg           <  1:2521851‑M2/26‑1 (MQ=255)
                         caaccacctGACGCTGACCGCGCCGGAAATGACTg           <  1:17535526‑M2/26‑1 (MQ=255)
                         acaccacctGACGCTGACCGCGCCGGAAATGACTg           <  1:9018580‑M2/26‑1 (MQ=255)
                         acaGCAACTGACGCTGACCGCGCCGGAAATGACTg           >  1:4839615/1‑35 (MQ=255)
                         acaGCAACTGACGCTGACCGCGCCGGAAATGACTg           >  1:13179119/1‑35 (MQ=255)
                         acaGCAACTGACGCTGACCGCGCCGGAAATGACTg           >  1:7208407/1‑35 (MQ=255)
                         acaGCAACTGACGCTAACCGCGCCGGAAATGACTg           >  1:15280076/1‑35 (MQ=255)
                          caGCAACTGACGCTGACCGCGCCGGAAATTACTgc          >  1:13260269/1‑35 (MQ=255)
                          caGCAACTGACGCTGACCGCGCCGGAAATGACTgc          >  1:17796054/1‑35 (MQ=255)
                            gCAACTGACGCTGACCGCGCCGGAAATGACTgcgc        >  1:11258674/1‑35 (MQ=255)
                             cccctGACGCTGACCGCGCCGGAAATGACTGCGCt       <  1:10425245‑M2/30‑1 (MQ=255)
                             ccccTGACGATGACCGCGCCGGAAATGACTGCGCt       <  1:8060771/32‑1 (MQ=25)
                             cacctGACGCTGACCGCGCCGGAAATGACTGCGCt       <  1:9598456‑M2/30‑1 (MQ=255)
                             cacctGACGCTGACCGCGCCGGAAATGACTGCGCt       <  1:8940918‑M2/30‑1 (MQ=255)
                             cAACTGACGCTGACCGCGCCGGAAATGACTGCGCt       >  1:17061617/1‑35 (MQ=255)
                              ccctGACGCTGCCCGCGCCGGAAATGACTGCGCtg      <  1:13207224‑M2/31‑1 (MQ=255)
                              ccctGACGCTGCCCGCGCCGGAAATGACTGCGCtg      <  1:14739271‑M2/31‑1 (MQ=255)
                              acctGACGCTGACCGCGCCGGAAATGACTGCGCtg      <  1:7888284‑M2/31‑1 (MQ=255)
                              acctGACGCTGACCGCGCCGGAAATGACTGCGCtg      <  1:15020124‑M2/31‑1 (MQ=255)
                              aaCTGACGCTGACCGCGCCGGAAATGACTGCGCtg      >  1:2382149/1‑35 (MQ=255)
                              aaCTGACGCTGACCGCGCCGGAAATGACTGCGCtg      >  1:12843958/1‑35 (MQ=255)
                              aaCTGACGCTGACCGCGCCGGAAATGACTGCGCtg      >  1:16046135/1‑35 (MQ=255)
                               cctGACGCTGACCGCGCCGGAAATGACTGCGCtgg     <  1:6144945‑M2/32‑1 (MQ=255)
                               ccTGCCGCGGGCCGCGCCGGAAATGACTGCGCtgg     <  1:17073224/34‑1 (MQ=21)
                               aCTGACTCTGACCGCGCCGGAAATGACTGCGCtgg     >  1:12072753/1‑35 (MQ=255)
                               aCTGACGCTGACCGCGCCGGAAATGACTGCGCtgg     >  1:9218787/1‑35 (MQ=255)
                               aCTGACGCTGACCGCGCCGGAAATGACTGCGCtgg     >  1:7461170/1‑35 (MQ=255)
                               aCTGACGCTGACCGCGCCGGAAATGACTGCGCtgg     >  1:15247877/1‑35 (MQ=255)
                               aCTGACGCTGACCGCGCCGGAAATGACTGCGCtgg     >  1:3408004/1‑35 (MQ=255)
                                ctGACGCTGACCGCGCCGGAAATGACTGCGCtggt    >  1:78794‑M2/3‑35 (MQ=255)
                                ctGACGCTGACCGCGCCGGAAATGACTGCGCtggt    <  1:18933139‑M2/33‑1 (MQ=255)
                                ctGACGCTGACCGCGCCGGAAATGACTGCGCtggt    >  1:18971399‑M2/3‑35 (MQ=255)
                                ctGACGCTGACCGCGCCGGAAATGACTGCGCtggt    <  1:20101299‑M2/33‑1 (MQ=255)
                                ctGACGCTGACCGCGCCGGAAATGACTGCGCtggt    <  1:12507966‑M2/33‑1 (MQ=255)
                                ctGACGCTGACCGCGCCGGAAATGACTGCGCtggt    >  1:2915549‑M2/3‑35 (MQ=255)
                                 tGACGCTGACCGCGCCGGAAATGACTGCGCtggtg   <  1:14838829‑M2/34‑1 (MQ=255)
                                 tGACGCTGACCGCGCCGGAAATGACTGCGCtggtg   <  1:8134000‑M2/34‑1 (MQ=255)
                                 tGACGCTGACCGCGCCGGAAATGACTGCGCtggtg   >  1:20473329‑M2/2‑35 (MQ=255)
                                 tGACGCTGACCGCGCCGGAAATGACTGCGCtggtg   >  1:2265940‑M2/2‑35 (MQ=255)
                                 tGACGCTGACCGCGCCGGAAATGACTGCACtggtg   >  1:3714628‑M2/2‑35 (MQ=255)
                                  gACGCTGACCGCGCCGGAAATGACTGCGCtggtgg  <  1:2606374/35‑1 (MQ=255)
                                  |                                  
CCGAGTCACTGCTGATCGACAAAGCACAGCAACTGACGCTGACCGCGCCGGAAATGACTGCGCTGGTGG  >  REL606/4115713‑4115781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.