New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 253054466 (0.640)11 (0.120) 5/42 NT 18.2% coding (1232/1668 nt) hyfG hydrogenase 4, subunit
?REL606 3367495 = 41 (0.460)intergenic (‑81/+26) yhdN/rplQ hypothetical protein/50S ribosomal protein L17

Only 100 of 121 total aligned reads displayed.

AATATTCCAAAAACACTGTTTACCTTTACCGGCGGCGATGTTTTCTCCCGCGTGATGGTCCGTGTCAAA  >  REL606/2530510‑2530578
                                  |                                  
aaTATTCCAAAAACACTGTTTACCTTTACCGGCGG                                    >  1:5327479‑M1/1‑35 (MQ=255)
aaTATTCCAAAAACACTGTTTACCTTTACCGGCGG                                    >  1:2718530‑M1/1‑35 (MQ=255)
 atatTCCAAAAACACTGTTTACCTTTACCggcggc                                   <  1:14315619/35‑1 (MQ=255)
 atatTCCAAAAACACTGTTTACCTTTACCggcggc                                   <  1:14260770/35‑1 (MQ=255)
 atatTCCAAAAACACTGTTTACCTTTACCGGCGGg                                   >  1:17161321‑M1/1‑34 (MQ=255)
 atatTCCAAAAACACTGTTTACCTTTACCGGCGGg                                   >  1:3097882‑M1/1‑34 (MQ=255)
  tatTCCAAAAACACTGTTTACCTTTACCGgcggcg                                  <  1:20067734/35‑1 (MQ=255)
  tatTCCAAAAACACTGTTTACCTTTACCGGCGGgg                                  >  1:19648369‑M1/1‑33 (MQ=255)
  tatTCCAAAAACACTGTTTACCTTTACCGGCGGgg                                  >  1:13093636‑M1/1‑33 (MQ=255)
  tatTCCAAAAACACTGTTTACCTTTACCGGCGGgg                                  >  1:2600791‑M1/1‑33 (MQ=255)
  tatTCCAAAAACACTGTTTACCTTTACCGGCGGgg                                  >  1:4440412‑M1/1‑33 (MQ=255)
   atTCCAAAAACACTGTTTACCTTTACCGgcggcgg                                 >  1:12798377/1‑34 (MQ=255)
    ttCCAAAAACACTGTTTACCTTTACCGGCGGgggg                                >  1:15732245‑M1/1‑31 (MQ=255)
    ttCCAAAAACACTGTTTAACTTTACCGGCGGCGAt                                <  1:8545274/35‑1 (MQ=255)
     tCCAAAAACACTGTTTACCTTTACCGGCGGggggg                               >  1:16011278‑M1/1‑30 (MQ=255)
     tCCAAAAACACTGTTTACCTTTACCGGCGGggggg                               >  1:18331714‑M1/1‑30 (MQ=255)
     tCCAAAAACACTGTTTACCTTTACCGGCGGCGATg                               <  1:2633030/35‑1 (MQ=255)
     tCCAAAAACACTGTTTACCTTTACCGGCGGCGATg                               <  1:683574/35‑1 (MQ=255)
     tCCAAAAACACTGTTTACCTTTACCGGCGGCGATg                               <  1:15399800/35‑1 (MQ=255)
       cAAAAACACTGTTTACCTTTACCGGCGGggggggg                             >  1:5486297‑M1/1‑28 (MQ=255)
       cAAAAACACTGTTTACCTTTACCGGCGGCGATGtt                             <  1:14570809/35‑1 (MQ=255)
        aaaaaCACTGTTTACCTTTACCGGCGGggggggtt                            >  1:10296251‑M1/1‑27 (MQ=255)
         aaaaCACTGTTTACCTTTACCGGCGTCGATGtttt                           >  1:5286947/1‑35 (MQ=255)
         aaaaCACTGTTTACCTTTACCGGCGGggggggttt                           >  1:18643198‑M1/1‑26 (MQ=255)
         aaaaCACTGTTTACCTTTACCGGCGGggggggttt                           >  1:1231938‑M1/1‑26 (MQ=255)
         aaaaCACTGTTTACCTTTACCGGCGGCGATGtttt                           <  1:969828/35‑1 (MQ=255)
         aaaaCACTGTTTACCTTTACCGGCGGCGATGtttt                           <  1:3746724/35‑1 (MQ=255)
          aaaCACTGTTTACCTTTACCGGCGTCGATGTTTtc                          >  1:17962962/1‑35 (MQ=255)
           aaCACTGTTTACCTTTGCCGGCGGCGATGTTTtct                         <  1:17838745/35‑1 (MQ=255)
           aaCACTGTTTACCTTTACCGGCGGCGATGTTTtct                         <  1:3672914/35‑1 (MQ=255)
           aaCACTGTTTACCTTTACCGGCGGCGATGTTTtct                         <  1:5841684/35‑1 (MQ=255)
           aaCACTGTTTACCTTTACCGGCGGCGATGTTTtct                         <  1:17198783/35‑1 (MQ=255)
           aaCACTGTTTACCTTTACCGGCGGCGATGTTTtct                         <  1:1806876/35‑1 (MQ=255)
           aaCACTGTTTACCTTTACCGGCGGCGATGTTTtct                         <  1:3690880/35‑1 (MQ=255)
            acacTGTTTACCTTTACCGGCGGggggggtttttt                        >  1:9087393‑M1/1‑23 (MQ=255)
            acacTGTTTACCTTTACCGGCGGCGATGTTTtctc                        <  1:16097133/35‑1 (MQ=255)
             cacTGTTTACCTTTACCGGCGGggggggttttttt                       >  1:7519609‑M1/1‑22 (MQ=255)
             cacTGTTTACCTTTACCGGCGGCGATGTTTTCTcc                       <  1:15433296/35‑1 (MQ=255)
             cacTGTTTACCTTTACCGGCGGCGATGTTTTCTcc                       <  1:9234361/35‑1 (MQ=255)
              acTGTTTGCCTTTACCGGCGGCGATGTTTTCTccc                      <  1:2093393/35‑1 (MQ=255)
              acTGTTTACCTTTACCGGCGGggggggtttttttc                      >  1:18464954‑M1/1‑21 (MQ=255)
              acTGTTTACCTTTACCGGCGGggggggtttttttc                      >  1:4099871‑M1/1‑21 (MQ=255)
              acTGTTTACCTTTACCGGCGGCGATGTTTTCTcct                      <  1:18860931/35‑2 (MQ=255)
              acTGTTTACCTTTACCGGCGGCGATGTTTTCTccc                      <  1:12872563/35‑1 (MQ=255)
              acTGTTTACCTTTACCGGCGGCGATGTTTTCTccc                      <  1:13486692/35‑1 (MQ=255)
              acTGTTTACCTTTACCGGCGGCGATGTTTTCTccc                      <  1:15381042/35‑1 (MQ=255)
               cTGTTTACCTTTACCGGCGGGGGGGGTTtctctcc                     >  1:6068648/1‑32 (MQ=12)
               cTGTTTACCTTTACCGGCGGCGATGTTTTCTCCcg                     <  1:20328918/35‑1 (MQ=255)
               cTGTTTACCTTTACCGGCGGCGATGTTTTCTCCcg                     <  1:6899101/35‑1 (MQ=255)
               cTGATTACCTTTACCGGCGGCGATGTTTTCTCCcg                     <  1:3795162/35‑1 (MQ=255)
                tGTTTACCTTTACCGGCGGGGGGGTTTTTTccctt                    >  1:9769776/1‑33 (MQ=16)
                tGTTTACCTTTACCGGCGGCGATGTTTTCTCCcgc                    <  1:6285956/35‑1 (MQ=255)
                tGTTTACCTTTACCGGCGGCGATGTTTTCTCCcgc                    <  1:16162209/35‑1 (MQ=255)
                 gTTTACCTTTACCGGCGGCGATGTTTTCTCCcgcg                   <  1:19289366/35‑1 (MQ=255)
                 gTTTACCTTTACCGGCGGCGATGTTTTCTCCcgcg                   <  1:18076801/35‑1 (MQ=255)
                  tttacctttaccGGCGGCGATGTTTTCTCCCGCGt                  <  1:3904234/35‑1 (MQ=255)
                  tttacctttaccGGCGGCGATGTTTTCTCCCGCGt                  <  1:10129541/35‑1 (MQ=255)
                  tttacctttaccGGCGGCGATGTTTTCTCCCGCGt                  <  1:11586061/35‑1 (MQ=255)
                   ttacctttaccGGCGGCGATGTTTTCTCCCGCGTg                 <  1:3297405/35‑1 (MQ=255)
                     ccctgtaccGGCGGCGATGTTTTCTCCCGCGTGAt               <  1:4126553/34‑1 (MQ=255)
                     acctttaccGGCGGCGATGTTTTCTCCCGCGTGAt               <  1:16653129/35‑1 (MQ=255)
                      cctttaccGGCGGCGATGTTTTCTCCCGCGTGATg              <  1:8771743/35‑1 (MQ=255)
                      cctttaccGGCGGCGATGTTTTCTCCCGCGTGATg              <  1:8078158/35‑1 (MQ=255)
                      cctttaccGGCGGCGATGTTTTCTCCCGCGTGATg              <  1:19395437/35‑1 (MQ=255)
                       ctttagcGGCGGCGATGTTTTCTCCCGCGTGATgg             <  1:3122355/35‑1 (MQ=255)
                       ctttaccGGCGGCGATGTTTTCTCCCGCGTGATgg             <  1:8173369/35‑1 (MQ=255)
                       ctttaccGGCGGCGATGTTTTCTCCCGCGTGATgg             <  1:10943259/35‑1 (MQ=255)
                       ctttaccGGCGGCGATGTTTTCTCCCGCGTGATgg             <  1:7763318/35‑1 (MQ=255)
                        tttaccGGCGGCGATGTTTTCTCCCGCGTGATGGt            <  1:5485388/35‑1 (MQ=255)
                        tttaccGGCGGCGATGTTTTCTCCAGCGTGATGGt            <  1:2416357/35‑1 (MQ=255)
                          taccGGCGGCGATGTTTTCTCCCGCGTGATGGTcc          <  1:9876752/35‑1 (MQ=255)
                          gcccGGCGGCGAGGTTTGCTCCCGCGTGATGGTcc          <  1:17913213/33‑1 (MQ=25)
                           accGGCGGCGATGTTTTCTCCCGCGTGATGGTCCg         <  1:12878160/35‑1 (MQ=255)
                           accGGCGGCGATGTTTTCTCCCGCGTGATGGTCCg         <  1:13895115/35‑1 (MQ=255)
                           accGGCGGCGATGTTTTCTACCGCGTGATGGTCCg         <  1:10684118/35‑1 (MQ=255)
                            ccGGCGGCGATGTTTTCTCCCGCGTGATGGTCCgt        <  1:12914733/35‑1 (MQ=255)
                            ccGGCGGCGATGTTTTCTCCCGCGTGATGGTCCgt        <  1:8132811/35‑1 (MQ=255)
                            ccGGCGGCGATGTTTTCTCCCGCGTGATGGTCCgt        <  1:754648/35‑1 (MQ=255)
                            ccGGCGGCGATGTTTTCTCCCGCGTGATGGTCCgt        <  1:6761504/35‑1 (MQ=255)
                            ccGGCGGCGATGTTTTCTCCCGCGTGATGGTCCgt        <  1:5143822/35‑1 (MQ=255)
                            ccGGCGGCGATGTTTTCTCCCGCGTGATGGTCCgt        <  1:5912776/35‑1 (MQ=255)
                            ccGGCGGCGATGTTTTCTCCCGCGTGATGGTCCgt        <  1:2277490/35‑1 (MQ=255)
                            ccGGCGGCGATGTTTTCTCCCGCGTGATGGTCCgt        <  1:6266717/35‑1 (MQ=255)
                             cggcggCGATGTTTTCTCCCGCGTGATGGTCCgtg       <  1:10681538/35‑1 (MQ=255)
                             cggcggCGATGTTTTCTCCCGCGTGATGGTCCgtg       <  1:15804110/35‑1 (MQ=255)
                               gcggcgATGTTTTCTCCCGCGTGATGGTCCGTGTc     <  1:17245368/35‑1 (MQ=255)
                                cggcgATGTTTTCTCCCGCGTGATGGTCCGTGTCa    <  1:11323972/35‑1 (MQ=255)
                                cggcgATGTTTGCTCCCGCGTGATGGTCCGTGTCa    <  1:14889840/35‑1 (MQ=255)
                                 ggcgATGTTTTCTCCCGCGTGATGGTCCGTGTCaa   <  1:896481/35‑1 (MQ=255)
                                 ggcgATGTTTTCTCCCGCGTGATGGTCCGTGTCaa   <  1:5396566/35‑1 (MQ=255)
                                 ggcgATGTTTTCTCCCGCGTGATGGTCCGTGTCaa   >  1:4197169/1‑35 (MQ=255)
                                 ggcgATGTTTTCTCCCGCGTGATGGTCCGTGTCaa   <  1:16726360/35‑1 (MQ=255)
                                  gcgATGTTTTCTCCCGCGTGATGGTCCGTGTCaaa  >  1:817789/1‑35 (MQ=255)
                                  gcgATGTTTTCTCCCGCGTGATGGTCCGTGTCaaa  <  1:12113138/35‑1 (MQ=255)
                                  gcgATGTTTTCTCCCGCGTGATGGTCCGTGTCaaa  >  1:3184690/1‑35 (MQ=255)
                                  gcgATGTTTTCTCCCGCGTGATGGTCCGTGTCaaa  <  1:11810353/35‑1 (MQ=255)
                                  gcgATGTTTTCTCCCGCGTGATGGTCCGTGTCaaa  <  1:9546205/35‑1 (MQ=255)
                                  gcgATGTTTTCTCCCGCGTGATGGTCCGTGTCaaa  <  1:4977966/35‑1 (MQ=255)
                                  gcgATGTTTTCTCCCGCGTGATGGTCCGTGTCaaa  >  1:7102513/1‑35 (MQ=255)
                                  gcgATGTTTTCTCCCGCGTGATGGTCCGTGTCaaa  >  1:6910437/1‑35 (MQ=255)
                                  |                                  
AATATTCCAAAAACACTGTTTACCTTTACCGGCGGCGATGTTTTCTCCCGCGTGATGGTCCGTGTCAAA  >  REL606/2530510‑2530578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.