New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3483684 =62 (0.600)11 (0.140) 5/36 NT 15.9% coding (2000/2706 nt) malT transcriptional regulator MalT
?REL606 = 3677027 70 (0.910)coding (478/987 nt) yiaO predicted transporter

Only 100 of 166 total aligned reads displayed.

CGGGTGATTTACTGGCAAATGACCGGTGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAA  >  REL606/3483650‑3483718
                                  |                                  
gatgtcaccaactcgcgcgcaccggttaaaacccc                                    >  1:8136435‑M1/35‑35 (MQ=255)
cGGGTTATTTACTGGCAAATGACCGGTGATAAAgc                                    >  1:19762564/1‑35 (MQ=255)
cGGGTGATTTACTGGCAAATGACCGGTGATAAAgc                                    <  1:16521580/35‑1 (MQ=255)
cGGGTGATTTACTGGCAAATGACCGGTGATAAAgc                                    <  1:18188296/35‑1 (MQ=255)
cGGGTGATTTACTGGCAAATGACCGGTGATAAAgc                                    >  1:5756606/1‑35 (MQ=255)
cGGGTGATTTACTGGCAAATGACCGGTGATAAAgc                                    <  1:519204/35‑1 (MQ=255)
cGGGGGATTTACTGGCAAATGACCGGTGATAAAgc                                    >  1:2993873/1‑35 (MQ=255)
 gggTGATTTACTGGCAAATGACCGGTGATAAAgcc                                   <  1:538958/35‑1 (MQ=255)
 gggTGATTTACTGGCAAATGACCGGTGATAAAgcc                                   <  1:1475709/35‑1 (MQ=255)
 gggTGATTTACTGGCAAATGACCGGTGATAAAgcc                                   <  1:16531471/35‑1 (MQ=255)
 gggTGATTTACTGGCAAATGACCGGTGATAAAgcc                                   <  1:17606088/35‑1 (MQ=255)
 atgtccccaactcgcgcgcaccggttaaaaccccc                                   >  1:12579550‑M1/34‑35 (MQ=255)
 atgtcaccaactcgcgcgcaccggttaaaaccccc                                   <  1:19071302‑M1/2‑1 (MQ=255)
  tgtccccaactcgcgcgcaccggttaaaacccccg                                  >  1:11263638‑M1/33‑35 (MQ=255)
  tgtcaccaactcgcgcgcaccggttaaaacccccg                                  >  1:14624145‑M1/33‑35 (MQ=255)
  ggTGATTTACTGGCAAATGACCGGTGATAAAgccg                                  >  1:4955362/1‑35 (MQ=255)
  ggTGATTTACTGGCAAATGACCGGTGATAAAgccg                                  >  1:333239/1‑35 (MQ=255)
   gtcaccaactcgcgcgcaccggttaaaacccccgc                                 <  1:15511761‑M1/4‑1 (MQ=255)
   gtcaccaactcgcgcgcaccggttaaaacccccgc                                 <  1:10306367‑M1/4‑1 (MQ=255)
   gtcaccaactcgcgcgcaccggttaaaacccccgc                                 <  1:14050864‑M1/4‑1 (MQ=255)
   gTGATTTACTGGCAAATGACCGGTGATAAAgccgc                                 >  1:16545462/1‑35 (MQ=255)
    tGATTTACTGGCAAATGACCGGTGATAAAgccgcc                                >  1:19801096/1‑35 (MQ=255)
    tGATTTACTGGCAAATGACCGGTGATAAAgccgcc                                >  1:1262820/1‑35 (MQ=255)
    tGATTTACTGGCAAATGACCGGTGATAAAgccgcc                                >  1:9095781/1‑35 (MQ=255)
     caccaactcgcgcgcaccggttaaaacccccgccg                               <  1:11596080‑M1/6‑1 (MQ=255)
     caccaactcgcgcgcaccggttaaaacccccgccg                               <  1:3545071‑M1/6‑1 (MQ=255)
      aattACTGGCAAATGACCGGTGATAAAGCcgccgc                              >  1:9327746/3‑35 (MQ=255)
      aTTTACTGTCAAATGACCGGTGATAAAGCcgccgc                              >  1:12435305/1‑35 (MQ=255)
      aTTTACTGGCAAATGACCGGTGATAAAGCcgccgc                              >  1:18416655/1‑35 (MQ=255)
      aTTTACTGGCAAATGACCGGTGATAAAGCcgccgc                              >  1:20169266/1‑35 (MQ=255)
      aTTTACTGGCAAATGACCGGTGATAAAGCcgccgc                              >  1:9681612/1‑35 (MQ=255)
      aTTTACTGGCAAATGACCGGTGATAAAGCcgccgc                              >  1:13660630/1‑35 (MQ=255)
       tttACTGGCAAATGACCGGTGATAAAGCCGCCGCt                             >  1:404941/1‑35 (MQ=255)
       tttACTGGCAAATGACCGGTGATAAAGCCGCCGCt                             >  1:8365814/1‑35 (MQ=255)
       tttACTGGCAAATGACCGGTGATAAAGCCGCCGCt                             >  1:13415998/1‑35 (MQ=255)
        ttACTGGCAAATGACCTGTGATAAAGCCGCCGCTg                            >  1:5119996/1‑35 (MQ=255)
        ttACTGGCAAATGACCGGTGATAAAGCCGCCGCTg                            >  1:5485060/1‑35 (MQ=255)
        ttACTGGCAAATGACCGGTGATAAAGCCGCCGCTg                            >  1:4146919/1‑35 (MQ=255)
        ttACTGGCAAATGACCGGTGATAAAGCCGCCGCTg                            >  1:1907386/1‑35 (MQ=255)
           cTGGCAAATGACCGGTGATAAAGCCGCCGCTGCCa                         >  1:1234000/1‑35 (MQ=255)
            tGGCAAATGCCCGGTGATAAAGCCGCCGCTGCCaa                        >  1:3822695/1‑35 (MQ=255)
            tGGCAAATGACCGGTGATAAAGCCGCCGCTGCCaa                        >  1:1123118/1‑35 (MQ=255)
             ggCAAATGACCGGTGATAAAGCCGCCGCTGCCAAc                       >  1:11325698/1‑35 (MQ=255)
             ggCAAATGACCGGTGATAAAGCCGCCGCTGCCAAc                       >  1:10595662/1‑35 (MQ=255)
                aaaTGACCGGTGATAAAGCCGCCGCTGCCAACTgg                    >  1:7153118/1‑35 (MQ=255)
                aaaTGACCGGTGATAAAGCCGCCGCTGCCAACTgg                    >  1:19544353/1‑35 (MQ=255)
                aaaTGACCGGTGATAAAGCCGCCGCTGCCAACTgg                    >  1:957045/1‑35 (MQ=255)
                aaaTGACCGGTGATAAAGCCGCCGCTGCCAACTgg                    >  1:18563374/1‑35 (MQ=255)
                 aaTGACCGGTGATAAAGCCGCCGCTGCCAACTGGt                   >  1:19717303/1‑35 (MQ=255)
                  aTGACCGGTGATAAAGCCGCCGCTGCCAACTGGtt                  >  1:10865363/1‑35 (MQ=255)
                  aTGACCGGTGATAAAGCCGCCGCTGCCAACTGGtt                  >  1:18707620/1‑35 (MQ=255)
                  aTGACCGGTGATAAAGCCGCCGCTGCCAACTGGtt                  >  1:13005100/1‑35 (MQ=255)
                  aTGACCGGTGATAAAGCCGCCGCTGCCAAATGGtt                  >  1:3908349/1‑35 (MQ=255)
                   tGACCGGTGATAAAGCCGCCGCTGCCAACTGGCTg                 >  1:11409108/1‑35 (MQ=255)
                    gACCGGTGATAAAGCCGCCGCTGCCAACTGGTTGc                >  1:19649116/1‑35 (MQ=255)
                    gACCGGTGATAAAGCCGCCGCTGCCAACTGGTTGc                >  1:10353973/1‑35 (MQ=255)
                    gACCGGTGATAAAGCCGCCGCTGCCAACTGGTTGc                >  1:7891938/1‑35 (MQ=255)
                     aCCGGTGATAAAGCCGCCGCTGCCAACTGGGTggg               >  1:2981607/1‑33 (MQ=38)
                      ccGGTGATAAAGCCGCCGCTGCCAACTGGTTgggc              >  1:1035654/1‑32 (MQ=255)
                      ccGGTGATAAAGCCGCCGCCGCCAACTGGTTGCGt              >  1:20105856/1‑35 (MQ=255)
                       cGGTGATAAAGCCGCCGCTGCCAACTGGTTGGGTc             >  1:6029453/1‑35 (MQ=255)
                       cGGTGATAAAGCCGCCGCTGCCAACTGGTTGCGTc             >  1:15336979/1‑35 (MQ=255)
                       cGGTGATAAAGCCGCCGCTGCCAACTGGTTGCGTc             >  1:18095230/1‑35 (MQ=255)
                         gTGATAAAGCCGCCGCTGCCAACTGGTTGCGTCAt           >  1:2235090/1‑35 (MQ=255)
                         gTGATAAAGCCGCCGCTGCCAACTGGTTGCGTCAt           >  1:8653352/1‑35 (MQ=255)
                          tgaaacccCCGCCGCTGCCAACTGGTTGCGTCATa          >  1:20612035‑M1/9‑35 (MQ=255)
                          taaaacccCAGCCGCTGCCAACTGGTTGCGTCATa          >  1:4886519‑M1/9‑35 (MQ=255)
                          tGATAAAGCCGCCGCTGCCAACTGGGTGCGTCATa          >  1:8002570/1‑35 (MQ=255)
                           gacacccCCGCCGCTGCCAACTGGTTGCGTCATAc         >  1:9061215‑M1/8‑35 (MQ=255)
                           aaaacccCCGCCGCTGCCAACTGGTTGCGTCATAc         >  1:3680537‑M1/8‑35 (MQ=255)
                           aaaacccCCGCCGCTGCCAACTGGTTGCGTCATAc         >  1:12166284‑M1/8‑35 (MQ=255)
                            tgacccCCGCCGCTGCCAACTGGTTGCGTCATACg        >  1:616238‑M1/7‑35 (MQ=255)
                            aaacccCCGCCGCTGCCAACTGGTTGCGTCATACg        >  1:17509334‑M1/7‑35 (MQ=255)
                            aTAAAGCCGCCGCTGCCAACTGGTTGCGTCATACg        >  1:1618935/1‑35 (MQ=255)
                            aTAAAGCCGCCGCTGCCAACTGGTTGCGTCATACg        >  1:11708496/1‑35 (MQ=255)
                             tataGCCGTCGCTGCCAACTGGTTGTGGCATACgg       >  1:645423/4‑35 (MQ=19)
                             tacccCCGCCGCTGCCAACTGGTTGCGTCATACgg       >  1:10875061‑M1/6‑35 (MQ=255)
                             tAAAGCCGCCGCTGCCAACTGGTTGCGTCATACgg       >  1:16224156/1‑35 (MQ=255)
                             tAAAGCCGCCGCTGCCAACTGGTTGCGTCATACgg       >  1:4337096/1‑35 (MQ=255)
                             aaaccCCGCCGCTGCCAACTGGTTGCGTCATACgg       >  1:7639492‑M1/6‑35 (MQ=255)
                             aaaccCCGCCGCTGCCAACTGGTTGCGTCATACgg       >  1:17829443‑M1/6‑35 (MQ=255)
                              acccCCGCCGCTGCCAACTGGTTGCGTCATACGGc      >  1:6398681‑M1/5‑35 (MQ=255)
                              aaaGCCGCCGCTGCCAACTGGTTGCGTCATACGGc      >  1:9526215/1‑35 (MQ=255)
                               cccCCGCCGCTGCCAACTGGTTGCGTCATACGGCt     >  1:15908689‑M1/4‑35 (MQ=255)
                               cccCCGCCGCTGCCAACTGGTTGCGTCATACGGCt     >  1:813578‑M1/4‑35 (MQ=255)
                               cccCCGCCGCTGCCAACTGGTTGCGTCATACGGCt     >  1:13753573‑M1/4‑35 (MQ=255)
                               aaGCCGCCGCTGCCAACTGGTTGCGTCATACGGCt     >  1:15652553/1‑35 (MQ=255)
                               aaGCCGCCGCTGCCAACTGGTTGCGTCATACGGCt     >  1:19154938/1‑35 (MQ=255)
                               aaGCCGCCGCTGCCAACTGGTTGCGTCATACGGCt     >  1:859570/1‑35 (MQ=255)
                                ccCCGCCGCTGCCAACTGGTTGCGTCATACGGCTa    >  1:7885428‑M1/3‑35 (MQ=255)
                                aGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTa    >  1:10173003/1‑35 (MQ=255)
                                aGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTa    >  1:6748071/1‑35 (MQ=255)
                                aGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTa    >  1:44991/1‑35 (MQ=255)
                                 gccgccGCTGCCAACTGGTTGCGTCATACGGCTaa   >  1:20443871/1‑35 (MQ=255)
                                 gccgccGCTGCCAACTGGTTGCGTCATACGGCTaa   >  1:4604612/1‑35 (MQ=255)
                                 cCCGCCGCTGCCAACTGGTTGCGTCATACGGCTaa   >  1:19057205‑M1/2‑35 (MQ=255)
                                 cCCGCCGCTGCCAACTGGTTGCGTCATACGGCTaa   >  1:20066823‑M1/2‑35 (MQ=255)
                                 cCCGCCGCTGCCAACTGGTTGCGTCATACGGCTaa   >  1:9010467‑M1/2‑35 (MQ=255)
                                  CCGCCGCTGCCAACTGGTTGCGTCATACGGCTaaa  <  1:17612524‑M1/35‑1 (MQ=255)
                                  CCCCCGCTGCCAACTGGTTGCGTCATACGGCTaaa  >  1:7396767‑M1/1‑35 (MQ=255)
                                  |                                  
CGGGTGATTTACTGGCAAATGACCGGTGATAAAGCCGCCGCTGCCAACTGGTTGCGTCATACGGCTAAA  >  REL606/3483650‑3483718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.