New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 294481647 (0.460)22 (0.210) 8/48 NT 22.6% coding (261/660 nt) rpiA ribose‑5‑phosphate isomerase A
?REL606 3912264 = 104 (1.010)intergenic (+44/‑96) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

Only 100 of 171 total aligned reads displayed.

CTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGA  >  REL606/3912230‑3912296
                                  |                                
cgcgccgccgcctttgatcatttgcatgtggccgg                                  >  1:15286121‑M2/35‑35 (MQ=255)
cgcgccgccgcctttgatcatttgcatgtggccgg                                  >  1:10707136‑M2/35‑35 (MQ=255)
cTTAACGATCTAAGACCCCCGCACCGAAAGGTCCg                                  <  1:16487020/35‑1 (MQ=255)
cTTAACGAACTAAGACCCCCGCACCGAAAGGTCCg                                  <  1:12055594/35‑1 (MQ=255)
 ttAACGAACTAAGACCCCCGCACCGAAAGGTCCgg                                 >  1:19695506/1‑35 (MQ=255)
 ttAACGAACTAAGACCCCCGCACCGAAAGGTCCgg                                 >  1:7619814/1‑35 (MQ=255)
 ttAACGAACTAAGACCCCCGCACCGAAAGGTCCgg                                 <  1:9792747/35‑1 (MQ=255)
 ttAACGAACTAAGACCCCCGCACCGAAAGGTCCgg                                 >  1:9722842/1‑35 (MQ=255)
 ttAACGAACTAAGACCCCCGCACCGAAAGGTCCgg                                 >  1:1053761/1‑35 (MQ=255)
 gcgccgccgcctttgatcatttgcatgtggccggg                                 >  1:7332647‑M2/34‑35 (MQ=255)
  tAACGAACTAAGACCCCCGCACCGAAAGGTCCtgg                                >  1:14894036/1‑35 (MQ=255)
  tAACGAACTAAGACCCCCGCACCGAAAGGTCCggg                                >  1:585857/1‑35 (MQ=255)
  cgccgccgcctttgatcatttgcatgtggccgggg                                >  1:1757689‑M2/33‑35 (MQ=255)
   gccgccgcctttgatcatttgcatgtggccggggg                               >  1:8562947‑M2/32‑35 (MQ=255)
    aCGAACTAAGACCCCCGCACCGAAAGGTCCggggg                              >  1:11173361/1‑35 (MQ=255)
    aCGAACTAAGACCCCCGCACCGAAAGGTCCggggg                              <  1:9619505/35‑1 (MQ=255)
     cGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGt                             <  1:15488001/35‑1 (MQ=255)
     cGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGt                             >  1:7969806/1‑35 (MQ=255)
      gccgcctttgatcatttgcatgtggccgggggtgt                            >  1:6929922‑M2/29‑32 (MQ=255)
      gccgcctttgatcatttgcatgtggccgGGGGTtt                            >  1:9504873‑M2/29‑35 (MQ=255)
      gccgcctttgatcatttgcatgtggccgGGGGGtt                            >  1:2110337‑M2/29‑35 (MQ=255)
      gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt                            <  1:9624517/35‑1 (MQ=255)
      gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt                            >  1:16649580/1‑35 (MQ=255)
      gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt                            >  1:17966694/1‑35 (MQ=255)
      gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt                            >  1:13375709/1‑35 (MQ=255)
      gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt                            >  1:2989949/1‑35 (MQ=255)
       ccgcctttgatcatttgcatgtggccgGGGGTttt                           >  1:10840791‑M2/28‑35 (MQ=255)
        cgcctttgatcatttgcatgtggccgGGGGTtttt                          >  1:20350798‑M2/27‑35 (MQ=255)
        cgcctttgatcatttgcatgtggccgGGGGTtttt                          >  1:19485750‑M2/27‑35 (MQ=255)
        aCTAAGACCCCCGCACCGAAAGGTCCGGGGGtttt                          <  1:9103035/35‑1 (MQ=255)
        aCTAAGACCCCCGCACCGAAAGGTCCGGGGGtttt                          >  1:2336642/1‑35 (MQ=255)
         gcctttgatcatttgcatgtggccgGGGGGgtttt                         >  1:14980932‑M2/26‑35 (MQ=255)
          tAAGACCCCCGCACCGAAAGGTCCGGGGGtttttt                        >  1:4681745/1‑35 (MQ=255)
          cctttgatcatttgcatgtggccgGGGGTtttttt                        >  1:19823674‑M2/25‑35 (MQ=255)
          cctttgatcatttgcatgtggccgGGGGTtttttt                        >  1:1835831‑M2/25‑35 (MQ=255)
           aggACCCCCGCACCGAAAGGTCCGGGGGttttttt                       <  1:15314888/33‑1 (MQ=255)
           aaGACCCCCGCACCGAAAGGTCCGGGGGttttttt                       >  1:13004694/1‑35 (MQ=255)
           aaGACCCCCGCACCGAAAGGTCCGGGGGttttttt                       >  1:18456779/1‑35 (MQ=255)
            tttgatcatttgcatgtggccgGGGGttttttttg                      >  1:10627130‑M2/23‑34 (MQ=255)
            aGACCCCCGCACCGAAAGGTCCGGTGGgttttttt                      >  1:16168339/1‑35 (MQ=38)
             ttgatcatttgcatgtggccgGGGGtttttttttc                     >  1:10125736‑M2/22‑34 (MQ=255)
             ttgatcatttgcatgtggccgGGGGGTTTTTTTTg                     >  1:5128989‑M2/22‑35 (MQ=255)
             gtcccccGCACCGAAAGGTCCGGGGGgtttttttt                     >  1:1990090/3‑34 (MQ=38)
              aCCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGa                    >  1:12195865/1‑35 (MQ=255)
               cccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAc                   >  1:263858/1‑35 (MQ=255)
                ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc                  <  1:17096205/35‑1 (MQ=255)
                ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc                  >  1:15450944/1‑35 (MQ=255)
                ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc                  <  1:14033188/35‑1 (MQ=255)
                ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc                  <  1:15015258/35‑1 (MQ=255)
                 cccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt                 <  1:1340613/35‑1 (MQ=255)
                 cccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt                 >  1:13926161/1‑35 (MQ=255)
                 cccGCACCGAAAGGTCCGGGGGGTTTTTTTGACCt                 >  1:8384999/1‑35 (MQ=255)
                  ccGCACCGAAAGGTCCTGGGGTTTTTTTTGACCtt                >  1:17548972/1‑35 (MQ=255)
                  ccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCtt                <  1:4118406/35‑1 (MQ=255)
                  ccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCtt                <  1:14811804/35‑1 (MQ=255)
                  ccGCACCGAAAGGTCCGGGGGTTTTTTTTGACAtt                <  1:3279382/35‑1 (MQ=255)
                   cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa               <  1:13020678/35‑1 (MQ=255)
                   cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa               >  1:17878650/1‑35 (MQ=255)
                   cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa               >  1:11944278/1‑35 (MQ=255)
                   cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa               <  1:334918/35‑1 (MQ=255)
                    gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa              >  1:19432131/1‑35 (MQ=255)
                    gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa              <  1:19114255/35‑1 (MQ=255)
                    gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa              <  1:533370/35‑1 (MQ=255)
                    gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa              >  1:15106899/1‑35 (MQ=255)
                    gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa              >  1:623809/1‑35 (MQ=255)
                     cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa             >  1:15711458/1‑35 (MQ=255)
                     cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa             <  1:6036952/35‑1 (MQ=255)
                     cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa             >  1:10130513/1‑35 (MQ=255)
                      aCCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa            >  1:12476498/1‑35 (MQ=255)
                      aCCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa            <  1:11166169/35‑1 (MQ=255)
                       ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa           <  1:3752852/35‑1 (MQ=255)
                       ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa           <  1:15539004/35‑1 (MQ=255)
                        cGAAAGGTCCGGGTGTTTTTTTTGACCTTAAAAAc          >  1:13957889/1‑35 (MQ=255)
                        cGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAAc          <  1:16257613/35‑1 (MQ=255)
                        cGAAAGATCCGGGGGTTTTTTTTGACCTTAAAAAc          <  1:13191552/35‑1 (MQ=255)
                         gAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa         >  1:54345/1‑35 (MQ=255)
                         gAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa         >  1:4270236/1‑35 (MQ=255)
                         gAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa         <  1:9229929/35‑1 (MQ=255)
                          aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt        >  1:20603770/1‑35 (MQ=255)
                          aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt        >  1:11276752/1‑35 (MQ=255)
                          aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt        <  1:8932997/35‑1 (MQ=255)
                          aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt        >  1:6873303/1‑35 (MQ=255)
                          aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt        <  1:16168025/35‑1 (MQ=255)
                          aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt        <  1:3171932/35‑1 (MQ=255)
                           aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa       >  1:823413/1‑35 (MQ=255)
                           aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa       <  1:13019874/35‑1 (MQ=255)
                           aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa       <  1:6615051/35‑1 (MQ=255)
                           aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa       <  1:4685106/35‑1 (MQ=255)
                            aGGTCCGGGGGTTTTTTTTTACCTTAAAAACATaa      >  1:11814265/1‑35 (MQ=255)
                            aGGTCCGGGGGTTTTTTTTGACCTTAAAAACATaa      >  1:4016292/1‑35 (MQ=255)
                            aGGTCCGGGGGTTTTTTTTGACATTAAAAACATaa      <  1:18593979/35‑1 (MQ=255)
                             ggTCCGGGGGTTTTTTTTGACCTTAAAAACATAAc     <  1:11884532/35‑1 (MQ=255)
                             ggTCCGGGGGTTTTTTTTGACCTTAAAAACATAAc     <  1:9292407/35‑1 (MQ=255)
                             ggTCCGGGGGTTTTTTTTGACCTTAAAAACATAAc     >  1:5572387/1‑35 (MQ=255)
                              gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc    <  1:16635497/35‑1 (MQ=255)
                              gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc    >  1:2859124/1‑35 (MQ=255)
                              gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc    <  1:13521831/35‑1 (MQ=255)
                               tCCGGGGGTTTTTTTTGACCTTAAAAACATAACCg   <  1:12152004/35‑1 (MQ=255)
                               tCCGGGGGTTTTTTTTGACCTTAAAAACATAACCg   >  1:3205100/1‑35 (MQ=255)
                                ccGGGGGTTTTTTTTGACCTTAAAAACATAACCga  >  1:818514/1‑35 (MQ=255)
                                  |                                
CTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGA  >  REL606/3912230‑3912296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.