New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1087708 =57 (0.550)7 (0.090) 3/36 NT 11.8% coding (342/801 nt) ycdJ predicted hydrolase
?REL606 = 1145443 62 (0.800)intergenic (‑8/‑147) flgA/flgB flagellar basal body P‑ring biosynthesis protein A/flagellar basal‑body rod protein B

TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1087747‑1087708
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggGGGCGAAAATGCTGATAATAAAACGTAGCGTGGC  <  REL606/1145443‑1145410
                                                                          
TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACG                                         <  1:735679/35‑1
TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACG                                         <  1:3274871/35‑1
TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACG                                         <  1:18121894/35‑1
TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACG                                         <  1:11848459/35‑1
TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACG                                         <  1:10892571/35‑1
TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACG                                         <  1:11598947/35‑1
 CCCGCGTCGGTAACTGTGCTGATCAGCGTTAACGG                                        <  1:152442/35‑1
 CCCGCGTCGGTAACTGTGCTGATCAGCGTTAACGG                                        <  1:4428691/35‑1
 CCCGCGTCGGTAACTGTGCTGATCAGCGTTAACGG                                        <  1:16987084/35‑1
  CCGCGTCGGTAACTGTGCTGATCAGCGTTAACGGC                                       <  1:15439289/35‑1
  CCGCGTCGGTAACTGTGCTGATCAGCGTTAACGGC                                       <  1:16610005/35‑1
   CGCGTCGGTAACTGTGCTGATCAGCGTTAACGGCT                                      <  1:13227205/35‑1
   CGCGTCGGTAACTGTGCTGATCAGCGTTAACGGCT                                      <  1:3918175/35‑1
    GCGTCGGTAACTGTGCTGATCAGCGTTAACGGCTG                                     <  1:17872182/35‑1
    GCGTCGGTAACTGTGCTGATCAGCGTTAACGGATG                                     <  1:9410194/35‑1
     aGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG                                    <  1:9859970/34‑1
     CGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG                                    <  1:8452182/35‑1
     CGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG                                    <  1:7277536/35‑1
     CGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG                                    <  1:631870/35‑1
     CGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG                                    <  1:6221339/35‑1
     CGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG                                    <  1:4510291/35‑1
       TCGGTAACTGTGCTGATCAGCGTTAACGGCTGGGG                                  >  1:8461431/1‑35
       TCGGTAACTGTGCTGATCAGCGTTAACGGCTGGGG                                  >  1:16129658/1‑35
       TCGGTAACTGTGCTGATCAGCGTTAACGGCTGGGG                                  >  1:18176561/1‑35
        CGGTAACTGTGCTGATCAGCGTTAACGGCTGGGGt                                 >  1:12949014/1‑34
        CGGTAACTGTGCTGATCAGCGTTAACGGCTGGGGc                                 >  1:7605655/1‑34
          GTAACTGTGCTGATCAGCGTTAACGGCTGGGGGCG                               >  1:5449062/1‑35
          GTAACTGTGCTGATCAGCGTTAACGGCTGGGGACG                               >  1:17940490/1‑35
            AACTGTGCTGATCAGCGTTAACGGCTGGGGTCGAA                             >  1:5736915/1‑35
            AACTGTGCTGATCAGCGTTAACGGCTGGGGGCGAA                             >  1:1103353/1‑35
            AACTGTGCTGATCAGCGTTAACGGCTGGGGGCGAA                             >  1:978401/1‑35
            AACTGTGCTGATCAGCGTTAACGGCTGGGGACGAA                             >  1:15487954/1‑35
             ACTGTGCTGATCAGCGTTAACGGCTGGGGGGGAAA                            >  1:2198900/1‑35
             ACTGTGCTGATCAGCGTTAACGGCTGGGGGCGAAA                            >  1:9477507/1‑35
              CTGTGCTGATCAGCGTTAACGGCTGGGGGCGGAAA                           >  1:8882734/1‑35
                                       GGGGCGAAAATGCTGATAATAAAACGTAGCGTGGC  >  1:16371427/1‑35
                                       GGGGCGAAAATGCTGATAATAAAACGTAGCGTGGC  >  1:437840/1‑35
                                       GGGGCGAAAATGCTGATAATAAAACGTAGCGTGGC  <  1:19051556/35‑1
                                       GGGGCGAAAATGCTGATAATAAAACGTAGCGTGGC  <  1:9569787/35‑1
                                                                          
TCCCGCGTCGGTAACTGTGCTGATCAGCGTTAACGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1087747‑1087708
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggGGGCGAAAATGCTGATAATAAAACGTAGCGTGGC  <  REL606/1145443‑1145410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.