New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2216192 =62 (0.600)25 (0.310) 6/38 NT 27.2% coding (1142/1182 nt) setB lactose/glucose efflux system
?REL606 = 3911582 85 (1.040)coding (218/1551 nt) yifB predicted bifunctional enzyme and transcriptional regulator

Only 100 of 179 total aligned reads displayed.

CAGATCAGCTGGAGCCAGGTTGATGGTGATTTTTTTCGCCGGATATTCATATCCGCTATTGATAATGGC  >  REL606/3911548‑3911616
                                  |                                  
cAGATCAGCTGGAGCCAGGTTGATGGTGAtttttt                                    >  1:7862716/1‑35 (MQ=255)
cAGATCAGCTGGAGCCAGGTTGATGGTGAtttttt                                    <  1:11612973/35‑1 (MQ=255)
 aGATCAGCTGGAGCCAGGTTGATGGTGATTTTTTt                                   >  1:14402591‑M2/1‑34 (MQ=255)
 aGATCAGCTGGAGCCAGGTTGATGGCGATTTTTTt                                   <  1:19773184‑M2/35‑2 (MQ=255)
  gATCAGCTGGAGCCAGGTTGATGGTGATTTTTTtc                                  >  1:12297785‑M2/1‑33 (MQ=255)
   aTCAGCTGGAGCCAGGTTGATGGTGATTTTTTtcg                                 >  1:4362125‑M2/1‑32 (MQ=255)
   aTCAGCTGGAGCCAGGTTGATGGTGATTTTTTtcg                                 <  1:7322589‑M2/35‑4 (MQ=255)
   aTCAGCTGGAGCCAGGTTGATGGTGATTTTTTtcg                                 <  1:17937059‑M2/35‑4 (MQ=255)
    tCAGCTGGAGCCAGGTTGATGGTGATTTTTTtcgc                                >  1:5919155‑M2/1‑31 (MQ=255)
     cAGCTGGAGCCAGGTTGATGGTGATTTTTTtcgcc                               <  1:6427056‑M2/35‑6 (MQ=255)
     cAGCTGGAGCCAGGTTGATGGTGATTTTTTtcgcc                               >  1:9277491‑M2/1‑30 (MQ=255)
     cAGCTGGAGCCAGGTTGATGGTGATTTTTTtcgcc                               >  1:15505987‑M2/1‑30 (MQ=255)
     cAGCTGGAGCCAGGTTGATGGTGATTTTTTtcgcc                               >  1:19561998‑M2/1‑30 (MQ=255)
     cAGCTGGAGCCAGGTTGATGGTGATTTTTTtcgcc                               <  1:8585542‑M2/35‑6 (MQ=255)
      aGCTGGAGCCAGGTTGATGGTGATTTTTTTCGCCg                              >  1:9767997/1‑35 (MQ=255)
      aGCTGGAGCCAGGTTGATGGTGATTTTTTTCGCCg                              >  1:16026932/1‑35 (MQ=255)
      aGCTGGAGCCAGGTTGATGGTGATTTTTTTCGCCg                              <  1:19263447/35‑1 (MQ=255)
       gttGGAGCCAGGTTGATGGTGATTTTTTTCGCCgg                             <  1:1778110/33‑1 (MQ=255)
       gCTGGAGCCAGGTTGATGGTGATTTTTTTCGCCgg                             <  1:15150629/35‑1 (MQ=255)
       gCTGGAGCCAGGTTGATGGTGATTTTTTTCGCCgg                             >  1:6316194/1‑35 (MQ=255)
        cTGGAGCCAGGTTGATGGTGATTTTTTTCGCCGGa                            <  1:15611529/35‑1 (MQ=255)
        cTGGAGCCAGGTTGATGGTGATTTTTTTCGCCGGa                            >  1:8521185/1‑35 (MQ=255)
        cTGGAGCCAGGTTGATGGTGATTTTTTTCGCCGGa                            >  1:107656/1‑35 (MQ=255)
         tGGAGCCAGGTTGATGGTGATTTTTTTCGCCGGat                           >  1:18403948/1‑35 (MQ=255)
         tGGAGCCAGGTTGATGGTGATTTTTTTCGCCGGat                           <  1:2289762/35‑1 (MQ=255)
         tGGAGCCAGGTTGATGGTGATTTTTTTCGCCGGat                           >  1:14818809/1‑35 (MQ=255)
         tGGAGCCAGGTTGATGGTGATTTTTTTCGCCGGat                           <  1:10195494/35‑1 (MQ=255)
         tGGAGCCAGGTTGATGGTGATTTTTTTCGCCGGat                           <  1:12955353/35‑1 (MQ=255)
         tGGAGCCAGGTTGATGGTGATTTTTTTCGCCGGat                           <  1:1301736/35‑1 (MQ=255)
          ggAGCCAGGTTGATGGTGATTTTTTTCGCCGGata                          >  1:274787/1‑35 (MQ=255)
          ggAGCCAGGTTGATGGTGATTTTTTTCGCCGGata                          <  1:13607521/35‑1 (MQ=255)
          ggAGCCAGGTTGATGGTGATTTTTTTCGCCGGata                          >  1:2537752/1‑35 (MQ=255)
          ggAGCCAGGTTGATGGTGATTTTTTTCGCCGGata                          <  1:16247178/35‑1 (MQ=255)
           gAGCCAGGTTGATGGTGATTTTTTTCGCCGGatat                         <  1:5703843/35‑1 (MQ=255)
           gAGCCAGGTTGATGGTGATTTTTTTCGCCGGatat                         >  1:6716723/1‑35 (MQ=255)
           gAGCCAGGTTGATGGTGATTTTTTTCGCCGGatat                         >  1:6983608/1‑35 (MQ=255)
           gAGCCAGGTTGATGGTGATTTTTTTCGCCGGatat                         >  1:19719264/1‑35 (MQ=255)
           gAGCCAGGTTGATGGTGATTTTTTTCGCCGGatat                         >  1:8933333/1‑35 (MQ=255)
            aGCCAGGTTGATGGTGATTTTTTTCGCCGGATAtt                        >  1:14633046/1‑35 (MQ=255)
            aGCCAGGTTGATGGTGATTTTTTTCGCCGGATAtt                        <  1:12481513/35‑1 (MQ=255)
            aGCCAGGTTGATGGTGATTTTTTTCGCCGGATAtt                        >  1:17748051/1‑35 (MQ=255)
            aGCCAGGTTGATGGTGATTTTTTTCGCCGGATAtt                        >  1:1771088/1‑35 (MQ=255)
             gCCAGGTTGATGGTGATTTTTTTCGCCGGATATTc                       <  1:603704/35‑1 (MQ=255)
             gCCAGGTTGATGGTGATTTTTTTCGCCGGATATTc                       >  1:16729894/1‑35 (MQ=255)
              ccAGGTTGATGGTGATTTTTTTCGCCGGATATTCa                      >  1:10647768/1‑35 (MQ=255)
              ccAGGTTGATGGTGATTTTTTTCGCCGGATATTCa                      <  1:10858519/35‑1 (MQ=255)
               cAGGTTGATGGTGATTTTTTTCGCCGGATATTCat                     <  1:7036848/35‑1 (MQ=255)
               cAGGTTGATGGTGATTTTTTTCGCCGGATATTCat                     >  1:12047286/1‑35 (MQ=255)
               cAGGTTGATGGTGATTTTTTTCGCCGGATATTCat                     <  1:12230079/35‑1 (MQ=255)
                aGGTTGATGGTGATTTTTTTCGCCGGATATTCata                    >  1:14937336/1‑35 (MQ=255)
                aGGTTGATGGTGATTTTTTTCGCCGGATATTCata                    >  1:13398057/1‑35 (MQ=255)
                aGGTTGATGGTGATTTTTTTCGCCGGATATTCata                    <  1:2303401/35‑1 (MQ=255)
                 ggTTGATGGTGATTTTTTTCGCCGGATATTCatat                   >  1:16349727/1‑35 (MQ=255)
                 ggTTGATGGTGATTTTTTTCGCCGGATATTCatat                   >  1:15076165/1‑35 (MQ=255)
                  gTTGATGGTGATTTTTTTCGCCGGATATTCATATc                  <  1:3816991/35‑1 (MQ=255)
                  gTTGATGGTGATTTTTTTCGCCGGATATTCATATc                  >  1:12807355/1‑35 (MQ=255)
                  gTTGATGGTGATTTTTTTCGCCGGATATTCATATc                  >  1:20105297/1‑35 (MQ=255)
                   ttGATGGTGATTTTTTTCTCCGGATATTCATATcc                 >  1:11376524/1‑35 (MQ=255)
                   ttGATGGTGATTTTTTTCGCCGGATATTCATATcc                 >  1:13337564/1‑35 (MQ=255)
                   ttGATGGTGATTTTTTTCGCCGGATATTCATATcc                 <  1:10528625/35‑1 (MQ=255)
                   ttGATGGTGATTTTTTTCGCCGGATATTCATATcc                 >  1:5479443/1‑35 (MQ=255)
                   ttGATGGTGATTTTTTTCGCCGGATATTCATATcc                 <  1:9058047/35‑1 (MQ=255)
                   ttGATGGTGATTTTTTTCGCCGGATATTCATATcc                 >  1:18488206/1‑35 (MQ=255)
                   ttGATGGTGATTTTTTTCGCCGGATATTCATATcc                 >  1:3227564/1‑35 (MQ=255)
                   ttGATGGTGATTTTTTTCGCCGGATATTCATATcc                 <  1:2755501/35‑1 (MQ=255)
                    tGATGGTGATTTTTTTCGCCGGATATTCATATCCg                <  1:20027907/35‑1 (MQ=255)
                    tGATGGTGATTTTTTTCGCCGGATATTCATATCCg                <  1:5274162/35‑1 (MQ=255)
                    tGATGGTGATTTTTTTCGCCGGATATTCATATCCg                >  1:18111983/1‑35 (MQ=255)
                    tGATGGTGATTTTTTTCGCCGGATATTCATATCCg                <  1:17867164/35‑1 (MQ=255)
                     gATGGTGATTTTTTTCGCCGGATATTCATATCCGc               <  1:11108763/35‑1 (MQ=255)
                     gATGGTGATTTTTTTCGCCGGATATTCATATCCGc               <  1:1896688/35‑1 (MQ=255)
                     gATGGTGATTTTTTTCGCCGGATATTCATATCCGc               >  1:13107897/1‑35 (MQ=255)
                      ttgGTGATGTTTTtcgccactctgttttgcttact              >  1:1376070‑M2/2‑13 (MQ=255)
                      gtgGTTATTTTTTtcgccactctgttttgcttact              >  1:4978654‑M2/2‑13 (MQ=255)
                      aTGGTGATTTTTTTCGCCGGATATTCATATCCGCt              >  1:9621494/1‑35 (MQ=255)
                      aTGGTGATTTTTTTCGCCGGATATTCATATCCGCt              >  1:5082401/1‑35 (MQ=255)
                      aTGGTGATTTTTTTCGCCGGATATTCATATCCGCt              >  1:17332927/1‑35 (MQ=255)
                       tGGTGATTTTTTtcgccactctgttttgcttactg             >  1:8035095‑M2/1‑12 (MQ=255)
                       tGGTAATTTTTTtcgccactctgttttgcttactg             >  1:996692‑M2/1‑12 (MQ=255)
                        ggTGTTTTTTTtcgccactctgttttgcttactgc            >  1:5354516‑M2/1‑11 (MQ=255)
                        ggTGATTTTTTTCGCCGGATATTCATATCCGCTaa            >  1:4554146/1‑34 (MQ=255)
                         gTGTTTTTTTtcgccactctgttttgcttactgcg           >  1:4687927‑M2/1‑10 (MQ=255)
                         gTGATTTTTTTCGCCGGATATTCATATCCGCTAtt           >  1:16597440/1‑35 (MQ=255)
                         gTGATTTTTTTCGCCGGATATTCATATCCGCTAtt           >  1:5596581/1‑35 (MQ=255)
                         gTGATTTTTTTCGCCGGATATTCATATCCGCTAtt           >  1:8994364/1‑35 (MQ=255)
                          tGTTTTTTTtcgccactctgttttgcttactgcgg          >  1:3042381‑M2/1‑9 (MQ=255)
                          tGTTTTTTTtcgccactctgttttgcttactgcgg          >  1:2362885‑M2/1‑9 (MQ=255)
                          tGATTTTTTTCGCCGGATATTCATATCCGCTATTg          >  1:8420407/1‑35 (MQ=255)
                          tGATTTTTTTCGCCGGATATTCATATCCGCTATTg          >  1:19375302/1‑35 (MQ=255)
                           gATTTTTTTCGCCGGATATTCATATCCGCTATTGa         >  1:20530970/1‑35 (MQ=255)
                            ttttttttcgccactctgttttgcttactgcggat        >  1:4482243‑M2/2‑7 (MQ=255)
                             tttttttcgccactctgttttgcttactgcggatt       >  1:1707813‑M2/1‑6 (MQ=255)
                             tttttttcgccactctgttttgcttactgcggatt       >  1:13833679‑M2/1‑6 (MQ=255)
                             tttttttcgccactctgttttgcttactgcggatt       >  1:12332625‑M2/1‑6 (MQ=255)
                              ttttttcgccactctgttttgcttactgcggatta      >  1:17257692‑M2/1‑5 (MQ=255)
                              ttttttcgccactctgttttgcttactgcggatta      >  1:7332158‑M2/1‑5 (MQ=255)
                              ttttttCGCCGGATATTCATATCCGCTATTGATaa      <  1:14388658/35‑1 (MQ=255)
                               tttttcgccactctgttttgcttactgcggattaa     >  1:5869292‑M2/1‑4 (MQ=255)
                               tttttCGCCGGATATTCATATCCGCTATTGATAAt     >  1:13749507/1‑35 (MQ=255)
                                  ttcgccactctgttttgcttactgcggattaaaga  >  1:8113712‑M2/1‑1 (MQ=255)
                                  |                                  
CAGATCAGCTGGAGCCAGGTTGATGGTGATTTTTTTCGCCGGATATTCATATCCGCTATTGATAATGGC  >  REL606/3911548‑3911616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.