New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2979870 | 135 (1.310) | 6 (0.060) | 3/44 | NT | 6.2% | coding (962/981 nt) | yggR | predicted transporter |
? | REL606 | 4245169 = | 59 (0.630) | coding (456/1080 nt) | alr | alanine racemase |
Only 100 of 118 total aligned reads displayed.
ATCATCGCCTGACCCAGTGCAAAAACGTTCGTCAGCCGGTGAATATCGTCAGCCATTTTGCGCGCGCGG > REL606/4245135‑4245203 | atcatcGCCTGACCCAGTGCAAAAACGTTCGTCAg > 1:7817170/1‑35 (MQ=255) atcatcGCCTGACCCAGTGCAAAAACGTTCGTCAg < 1:5815156/35‑1 (MQ=255) atcatcGCCTGACCCAGTGCAAAAACGTTCGTCAg > 1:2319583/1‑35 (MQ=255) atcatcGCCTGACCCAGTGCAAAAACGTTCGTCAg > 1:18446094/1‑35 (MQ=255) tcatcGCCTGACCCAGTGCAAAAACGTTCGTCAGc < 1:9007288/35‑1 (MQ=255) tcatcGCCTGACCCAGTGCAAAAACGTTCGTCAGc > 1:7297098/1‑35 (MQ=255) tcatcGCCTGACCCAGTGCAAAAACGTTCGTCAGc > 1:4977989/1‑35 (MQ=255) catcGCCTGACCCAGTGCAAAAACGTTCGTCAGcc > 1:8473941/1‑35 (MQ=255) atcGCCTGACCCAGTGCAAAAACGTTCGTCAGCCg > 1:10565490/1‑35 (MQ=255) atcGCCTGACCCAGTGCAAAAACGTTCGTCAGCCg > 1:392028/1‑35 (MQ=255) atcGCCTGACCCAGTGCAAAAACGTTCGTCAGCCg > 1:16422501/1‑35 (MQ=255) tcGCCTGACCCAGTGCAAAAACGTTCGTCAGCCgg > 1:17612618/1‑35 (MQ=255) tcGCCTGACCCAGTGCAAAAACGTTCGTCAGCCgg > 1:12945011/1‑35 (MQ=255) cGCCTGACCCAGTGCAAAAACGTTCGTCAGCCGGt > 1:3223573/1‑35 (MQ=255) gCCTGACCCAGTGCAAAAACGTTCGTCAGCCGGTg > 1:9861031/1‑35 (MQ=255) gCCTGACCCAGTGCAAAAACGTTCGTCAGCCGGTg > 1:11701432/1‑35 (MQ=255) ccTGACCCAGTGCAAAAACGTTCGTCAGCCGGTgc > 1:10459067/1‑34 (MQ=255) ccTGACCCAGTGCAAAAACGTTCGTCAGCCGGTGa > 1:18769476/1‑35 (MQ=255) cTGACCCAGTGCAAAAACGTTCGTCAGCCGGTGaa > 1:8317190/1‑35 (MQ=255) cTGACCCAGTGCAAAAACGTTCGTCAGCCGGTGaa > 1:13731626/1‑35 (MQ=255) tGACCCAGTGCAAAAACGTTCGTCAGCCGGTGAat > 1:5729667/1‑35 (MQ=255) tGACCCAGTGCAAAAACGTTCGTCAGCCGGTGAat > 1:18466043/1‑35 (MQ=255) tGACCCAGTGCAAAAACGTTCGTCAGCCGGTGAat > 1:17788059/1‑35 (MQ=255) tGACCCAGTGCAAAAACGTTCGTCAGCCGGCGAat > 1:19369106/1‑35 (MQ=255) gACCCAGTGCAAAAACGTTCGTCAGCCGTTGAata > 1:19152947/1‑35 (MQ=255) gACCCAGTGCAAAAACGTTCGTCAGCCGGTGaaca > 1:19174272/1‑33 (MQ=255) gACCCAGTGCAAAAACGTTCGTCAGCCGGTGAata > 1:11744021/1‑35 (MQ=255) gACCCAGTGCAAAAACGTTCGTCAGCCGGTGAata > 1:2981401/1‑35 (MQ=255) gACCCAGTGCAAAAACGTTCGTCAGCCGGTGAata > 1:2631284/1‑35 (MQ=255) gACCCAGTGCAAAAACGTTCGTCAGCCGGTGAata > 1:20548144/1‑35 (MQ=255) gACCCAGTGCAAAAACGTTCGTCAGCCGGTGAata > 1:16730550/1‑35 (MQ=255) aCCCAGTGCAAAAACGTTCGTCAGCCGGTGAatat > 1:1098766/1‑35 (MQ=255) ccAGTGCAAAAACGTTCGTCAGCCGGTGAATATCg > 1:12513214/1‑35 (MQ=255) ccAGTGCAAAAACGTTCGTCAGCCGGTGAATATCg > 1:10724050/1‑35 (MQ=255) ccAGCGCAAAAACGTTCGTCAGCCGGTGAATATCg > 1:14503091/1‑35 (MQ=255) cAGTGCAAAAACGTTCGTCAGCCGGTGAATATCGt > 1:13825283/1‑35 (MQ=255) aatGCAAAAACGTTCGTCAGCCGGTGAATATCGTc > 1:4896839/3‑35 (MQ=255) aGTGCAAAAACGTTCGTCAGCCGGTGAATATCGTc > 1:17989753/1‑35 (MQ=255) gTGCAAAAACGTTCGTCAGCCGGTGAATATCGTCa > 1:19076073/1‑35 (MQ=255) gTGCAAAAACGTTCGTCAGCCGGTGAATATCGTCa > 1:9641220/1‑35 (MQ=255) tGCAAAAACGTTCGTCAGCCGGTGAATATCGTCAg > 1:9106638/1‑35 (MQ=255) cAAAAACGTTCGTCAGCCGGTGAATATCGTCAGcc > 1:6128688/1‑35 (MQ=255) cAAAAACGTTCGTCAGCCGGTGAATATCGTCAGcc > 1:12919047/1‑35 (MQ=255) cAAAAACGTTCGTCAGCCGGTGAATATCGTCAGcc > 1:5469617/1‑35 (MQ=255) aaaaaCGTTCGTCAGCCGGTGAATATCGTCAGccc > 1:2105581/1‑34 (MQ=255) aaaaaCGTTCGTCAGCCGGTGAATATCGTCAGCCa > 1:2839110/1‑35 (MQ=255) aaaaaCGTTCGTCAGCCGGTGAATATCGTCAGCCa > 1:15382041/1‑35 (MQ=255) aaaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAt > 1:13613070/1‑35 (MQ=255) aaaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAt > 1:1860750/1‑35 (MQ=255) aaaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAt > 1:11908224/1‑35 (MQ=255) aaaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAt > 1:5377854/1‑35 (MQ=255) aaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAtt > 1:1958872/1‑35 (MQ=255) aaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAtt > 1:7817105/1‑35 (MQ=255) aaaCGTTCGTCAGCCGGTGAATATCGTCAGCCAtt > 1:10951815/1‑35 (MQ=255) cccttcccccaGCCGGTGAATATCGTCAGCCAttt < 1:5592449‑M2/24‑1 (MQ=255) cccttcccccaGCCGGTGAATATCGTCAGCCAttt < 1:16767006‑M2/24‑1 (MQ=255) cccgtcccccaGCCGGTGAATATCGTCAGCCAttt < 1:6353918‑M2/24‑1 (MQ=255) aaCGTTCGTCAGCCGGTGAATATCGTCAGCCCttt > 1:9253416/1‑35 (MQ=255) aaCGTTCGTCAGCCGGTGAATATCGTCAGCCAttt > 1:4188567/1‑35 (MQ=255) aaCGTTCGTCAGCCGGTGAATATCGTCAGCCAttt > 1:4989860/1‑35 (MQ=255) aaCGTTCGTCAGCCGGTGAATATCGTCAGCCAttt > 1:2125732/1‑35 (MQ=255) ccttcccccaGCCGGTGAATATCGTCAGCAAtttt < 1:234016‑M2/25‑1 (MQ=255) cGTTCGTCAGCCGGTGAATATCGTCAGCCATTTTg > 1:3798186/1‑35 (MQ=255) ttcccccaGCCGGTGAATATAGTCAGCCATTTTgc < 1:11771260‑M2/27‑1 (MQ=255) tccccccaGCCGGTGAATATCGTCAGCCATTTTgc < 1:12286861‑M2/27‑1 (MQ=255) gTTCGTCAGCCGGTGAATATCGTCAGCCAtttttc > 1:7509427/1‑33 (MQ=255) gTTCGTCAGCCGGTGAATATCGTCAGCCATTTTgc > 1:6176504/1‑35 (MQ=255) gTTCGTCAGCCGGTGAATATCGTCAGCCATTTTgc > 1:15820958/1‑35 (MQ=255) ttCGTCAGCCGGTGAATATCGTCAGCCATTTTtcg > 1:7055061/1‑35 (MQ=255) ttCGTCAGCCGGTGAATATCGTCAGCCATTTTtcg > 1:16006516/1‑35 (MQ=255) ttCGTCAGCCGGTGAATATCGTCAGCCATTTTtcg > 1:16224887/1‑35 (MQ=255) ttCGTCAGCCGGTGAATATCGTCAGCCATTTTgcg > 1:13450348/1‑35 (MQ=255) cccccaGCCGGTGAATATCGTCAGCCATTTTgcgc < 1:16538202‑M2/29‑1 (MQ=255) cccccaGCCGGTGAATATCGTCAGCCATTTTgcgc < 1:7991776‑M2/29‑1 (MQ=255) cccccaGCCGGTGAATATCGTCAGCCATTTTgcgc < 1:5913218‑M2/29‑1 (MQ=255) ccccaGCCGGTGAATATCGTCAGCCATTTTgcgcg < 1:11849682‑M2/30‑1 (MQ=255) cGTCAGCCGGTGAATATCGTCAGCCATTTTtcgcg > 1:13536327/1‑35 (MQ=255) cGTCAGCCGGTGAATATCGTCAGCCATTTTtcgcg > 1:6412236/1‑35 (MQ=255) gTCAGCCGGTGAATATCGTCAGCCATTTTtcccgc > 1:7233353/1‑35 (MQ=25) gTCAGCCGGTGAATATCGTCAGCCATTTTgcgcgc > 1:610943/1‑35 (MQ=255) gTCAGCCGGTGAATATCGTCAGCCATTTTgcgcgc > 1:7290062/1‑35 (MQ=255) cccaGCCGGTGAATATCGTCAGCCATTTTgcgcgc < 1:13049195‑M2/31‑1 (MQ=255) cccaGCCGGTGAATATCGTCAGCCATTTTgcgcgc < 1:10529672‑M2/31‑1 (MQ=255) cccaGCCGGTGAATATCGTCAGCCATTTTgcgcgc < 1:15680501‑M2/31‑1 (MQ=255) tCAGCCGGTGAATATCGTCAGCCATTTTtcgcgcg > 1:7383501/1‑35 (MQ=255) tCAGCCGGTGAATATCGTCAGCCATTTTtcgcgcg > 1:14835581/1‑35 (MQ=255) tCAGCCGGTGAATATCGTCAGCCATTTTgcgcgcg > 1:13214834/1‑35 (MQ=255) tCAGCCGGTGAATATCGTCAGCCATTTTgcgcgcc > 1:689824/1‑34 (MQ=255) cggCCGGTGAATATCGCCAGCCATTTTgcgcgcgc < 1:7272561/33‑1 (MQ=37) caGCCGGTGAATATCGTCAGCCATTTTtcgcgcgc > 1:2128167‑M2/3‑35 (MQ=255) caGCCGGTGAATATCGCCAGCCATTTTgcgcgcgc > 1:11367485‑M2/3‑35 (MQ=255) aGCCTGTGAATATCGTCAGCCATTTTGcgcgcgcg < 1:20203347‑M2/34‑1 (MQ=255) aGCCGGTGAATATCGTCAGCCATTTTTcgcgcgcg > 1:19913371‑M2/2‑35 (MQ=255) aGCCGGTGAATATCGTCAGCCATTTTGcgcgcgcg > 1:14208843‑M2/2‑35 (MQ=255) aGCCGGTGAATATCGTCAGCCATTTTGcgcgcgcg > 1:6840634‑M2/2‑35 (MQ=255) gCCGGTGAATATCGTCAGCCATTTTTCGCGCGCgg > 1:14711122/1‑35 (MQ=255) gCCGGTGAATATCGTCAGCCATTTTGCGCGCGCgg < 1:18353329/35‑1 (MQ=255) gCCGGTGAATATCGTCAGCCATTTTGCGCGCGCgg > 1:13282121/1‑35 (MQ=255) gCCGGTGAATATCGTCAGCCATTTTGCGCGCGCgg < 1:4105910/35‑1 (MQ=255) gCCGGTGAATATCGTCAGCCATTTTGCGCGCGCgg < 1:4284625/35‑1 (MQ=255) | ATCATCGCCTGACCCAGTGCAAAAACGTTCGTCAGCCGGTGAATATCGTCAGCCATTTTGCGCGCGCGG > REL606/4245135‑4245203 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |