New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 413197 = | 80 (0.780) | 16 (0.210) | 3/36 | NT | 19.4% | coding (93/492 nt) | yajQ | nucleotide‑binding protein |
? | REL606 | 3219746 = | 73 (0.950) | coding (344/477 nt) | agaB | N‑acetylgalactosamine‑specific enzyme IIB component of PTS |
Only 100 of 185 total aligned reads displayed.
ATAACGCGAGTCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACG > REL606/413163‑413231 | aTAACGCGAGTCGCGAAGTGGAGTCCCGTTTTGAc > 1:10464767/1‑35 (MQ=255) aTAACGCGAGTCGCGAAGTGGAGTCCCGTTTTGAc < 1:1614686/35‑1 (MQ=255) aTAACGCGAGTCGCGAAGTGGAGTCCCGTTTTGAc < 1:14225203/35‑1 (MQ=255) tAACGCGAGTCGCGAAGTGGAGTCCCGTTTTGACt > 1:10117137/1‑35 (MQ=255) tAACGCGAGTCGCGAAGTGGAGTCCCGTTTTGACt < 1:10168104/35‑1 (MQ=255) tAACGCGAGTCGCGAAGTGGAGTCCCGTTTTGACt < 1:1364117/35‑1 (MQ=255) cgacataaactttactgctgatttgctttttccCt < 1:914101‑M1/2‑1 (MQ=255) cgacataaactttactgctgatttgctttttccCt < 1:10888011‑M1/2‑1 (MQ=255) cgacataaactttactgctgatttgctttttccCt > 1:16182304‑M1/34‑35 (MQ=255) cgacataaactttactgctgatttgctttttccCt > 1:11156731‑M1/34‑35 (MQ=255) cgacataaactttactgctgatttgctttttccCt < 1:3592286‑M1/2‑1 (MQ=255) gacataaactttactgctgatttgctttttccCtt < 1:9767783‑M1/3‑1 (MQ=255) gacataaactttactgctgatttgctttttccCtt < 1:8389287‑M1/3‑1 (MQ=255) aaCGCGAGTCGCGAAGTGGAGTCCCGTTTTGACtt > 1:16849499/1‑35 (MQ=255) aaCGCGAGTCGCGAAGTGGAGTCCCGTTTTGACtt > 1:20437555/1‑35 (MQ=255) acataaactttactgctgatttgctttttccCTTc < 1:17314860‑M1/4‑1 (MQ=255) acataaactttactgctgatttgctttttccCTTc < 1:3873023‑M1/4‑1 (MQ=255) aCGCGAGTCGCGAAGTGGAGTCCCGTTTTGACTTc > 1:18245309/1‑35 (MQ=255) cgcgAGTCGCGAAGTGGAGTCCCGTTTTGACTTcc < 1:15251922/35‑1 (MQ=255) cgcgAGTCGCGAAGTGGAGTCCCGTTTTGACTTcc > 1:12654826/1‑35 (MQ=255) cataaactttactgctgatttgctttttccCTTcc < 1:13827298‑M1/5‑1 (MQ=255) gcgAGTCGCGAAGTGGAGTCCCGTTTTGACTTCCg < 1:2889061/35‑1 (MQ=255) gcgAGTCGCGAAGTGGAGTCCCGTTTTGACTTCCg < 1:17665019/35‑1 (MQ=255) gcgAGTCGCGAAGTGGAGTCCCGTTTTGACTTCCg < 1:1141579/35‑1 (MQ=255) gcgAGTCGCGAAGTGGAGTCCCGTTTTGACTTCCg < 1:10798143/35‑1 (MQ=255) gcgAGTCGCGAAGTGGAGTCCCGTTTTGACTTCCg < 1:15810570/35‑1 (MQ=255) ataaactttactgctgatttgctttttccCTTCCg < 1:4743684‑M1/6‑1 (MQ=255) ataaactttactgctgatttgctttttccCTTCCg < 1:5916252‑M1/6‑1 (MQ=255) ataaactttactgctgatttgctttttccCTTCCg > 1:7285139‑M1/30‑35 (MQ=255) ataaactttactgctgatttgctttttccCTTCCg > 1:8783138‑M1/30‑35 (MQ=255) ataaactttactgctgatttgctttttccCTTCCg > 1:11761956‑M1/30‑35 (MQ=255) cgAGTCGCGAAGTGGAGTCCCGTTTTGACTTCCGt < 1:16731480/35‑1 (MQ=255) cgAGTCGCGAAGTGGAGTCCCGTTTTGACTTCCGt > 1:7418788/1‑35 (MQ=255) cgAGTCGCGAAGTGGAGTCCCGTTTTGACTTCCGt > 1:10018129/1‑35 (MQ=255) gAGTCGCGAAGTGGAGTCCCGTTTTGACTTCCGTa > 1:2601215/1‑35 (MQ=255) aGTCGCGAAGTGGAGTCCCGTTTTGACTTCCGTaa > 1:10020769/1‑35 (MQ=255) aGTCGCGAAGTGGAGTCCCGTTTTGACTTCCGTaa > 1:12933536/1‑35 (MQ=255) tCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACg > 1:12505991/1‑35 (MQ=255) tCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACg > 1:19247436/1‑35 (MQ=255) tCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACg > 1:4902400/1‑35 (MQ=255) tCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACg > 1:6996221/1‑35 (MQ=255) cgcgAAGTGGAGTCCCGTTTTGCCTTCCGTAACGt < 1:13948841/35‑1 (MQ=255) cgcgAAGTGGAGTCCCGTTTTGACTTCCGTAACGt > 1:10517835/1‑35 (MQ=255) gcgAAGTGGAGACCCGTTTTGACTTCCGTAACGtt > 1:2550309/1‑35 (MQ=255) cgAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTg > 1:5323733/1‑35 (MQ=255) cgAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTg > 1:7447607/1‑35 (MQ=255) cgAAGTGGAGTCCCGTTTTGACTTACGTAACGTTg < 1:18413177/35‑1 (MQ=255) gAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGa > 1:17777672/1‑35 (MQ=255) aaGTGGAGTCCCGTTTTGACTTCCGTAACGTTGaa > 1:9215561/1‑35 (MQ=255) aaGTGGAGTCCCGTTTTGACTTCCGTAACGTTGaa > 1:11567670/1‑35 (MQ=255) aaGGGGAGTCCCGTTTTGCCTTCCGTAACGTTGaa < 1:7468985/35‑1 (MQ=25) aGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAg > 1:12037649/1‑35 (MQ=255) aGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAg > 1:6348171/1‑35 (MQ=255) gTGGAGTCCCGTTTTTACTTCCGTAACGTTGAAGc > 1:10983816/1‑35 (MQ=255) gTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGc > 1:19271256/1‑35 (MQ=255) ggAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCt > 1:20015160/1‑35 (MQ=255) ggAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCt > 1:14900697/1‑35 (MQ=255) gAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTc > 1:6523643/1‑35 (MQ=255) gAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTc > 1:632832/1‑35 (MQ=255) aGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCa > 1:19899089/1‑35 (MQ=255) gTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCAt > 1:12520046/1‑35 (MQ=255) ctttttttccCTTCCGTAACGTTGAAGCCTCAttt > 1:3005434‑M1/11‑35 (MQ=255) cccGTTTTGACTTCCGTAACGTTGAAGCCTCAttt > 1:13032553/1‑35 (MQ=255) cccGTTTTGACTTCCGTAACGTTGAAGCCTCAttt > 1:4973918/1‑35 (MQ=255) ctgttttccCTTCCGTAACGTTGAAGCCTCATTTg > 1:2117581‑M1/10‑35 (MQ=255) ccGTTTTGACTTCCGTAACGTTGAAGCCTCATTTg > 1:7847176/1‑35 (MQ=255) tttttcccCTTCCGTAACGTTGAAGCCTCATTTGa > 1:18841827‑M1/9‑35 (MQ=255) ctttttccCTTCCGTAACGTTGAAGCCTCATTTGa > 1:1150538‑M1/9‑35 (MQ=255) cGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGa > 1:19680847/1‑35 (MQ=255) ttttgccCTTCCGTAACGTTGAAGCCTCATTTGAg > 1:15205848‑M1/8‑35 (MQ=255) gtttcccCTTCCGTAACGTTGAAGCCTCATTTGAg > 1:20187243‑M1/8‑35 (MQ=255) gTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAg > 1:8617873/1‑35 (MQ=255) gTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAg > 1:14428119/1‑35 (MQ=255) gTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAg > 1:13459029/1‑35 (MQ=255) ttttccCTTCCGTAACGTTGAAGCCTCATTTGAGc > 1:10720094‑M1/7‑35 (MQ=255) ttttccCTTCCGTAACGTTGAAGCCTCATTTGAGc > 1:15468086‑M1/7‑35 (MQ=255) ttttTACTTCCGTAACGTTGAAGCCTCATTTGAGc > 1:2055016/1‑35 (MQ=255) ttttGACTTCCGTAACGTTGAAGCCTCATTTGAGc > 1:12725543/1‑35 (MQ=255) ttttGACTTCCGTAACGTTGAAGCCTCATTTGAGc > 1:5390576/1‑35 (MQ=255) tttcccCTTCCGTAACGTTGAAGCCTCATTTGAGc > 1:14642558‑M1/7‑35 (MQ=255) tttgcCTTCCGTAACGTTGAAGCCTCATTTGAGCt > 1:11051676‑M1/6‑35 (MQ=255) tttccCTTCCGTAACGTTGAAGCCTCATTTGAGCt > 1:8046914‑M1/6‑35 (MQ=255) tttGACTTCCGTAACGTTGAAGCCTCATTTGAGCt > 1:3157113/1‑35 (MQ=255) ttgccCTTCCGTAACGTTGAAGCCTCATTTGAGCt > 1:15950669‑M1/6‑35 (MQ=255) ttccCTTCCGTAACGTTGAAGCCTCATTTGAGCTg > 1:2203118‑M1/5‑35 (MQ=255) ttGACTTCCGTAACGTTGAAGCCTCATTTGAGCTg > 1:5240632/1‑35 (MQ=255) ttGACTTCCGTAACGTTGAAGCCTCATTTGAGCTg > 1:4351843/1‑35 (MQ=255) ttGACTTCCGTAACGTTGAAGCCTCATTTGAGCTg > 1:431732/1‑35 (MQ=255) tGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGa > 1:1717862/1‑35 (MQ=255) gACTTCCGTAACGTTGAAGCCTCATTTGAGCTGaa > 1:7666821/1‑35 (MQ=255) gACTTCCGTAACGTTGAAGCCTCATTTGAGCTGaa > 1:12390815/1‑35 (MQ=255) ccCTTCCGTAACGTTGAAGCCTCATTTGAGCTGaa > 1:20351795‑M1/3‑35 (MQ=255) cCTTCCGTAACGTTGAAGCCTCATTTGAGCTGAac > 1:1375836‑M1/2‑35 (MQ=255) cCTTCCGTAACGTTGAAGCCTCATTTGAGCTGAac > 1:5766279‑M1/2‑35 (MQ=255) cCTTCCGTAACGTTGAAGCCTCATTTGAGCTGAac > 1:1955612‑M1/2‑35 (MQ=255) cCTTCCGTAACGTTGAAGCCTCATTTGAGCTGAac > 1:8469359‑M1/2‑35 (MQ=255) cCTTCCGTAACGTTGAAGCCTCATTTGAGCTGAac > 1:8656915‑M1/2‑35 (MQ=255) cCTTCCGTAACGTTGAAGCCTCATTTGAGCTGAac > 1:930617‑M1/2‑35 (MQ=255) aCTTCCGTAACGTTGAAGCCTCATTTGAGCTGAac > 1:15714553/1‑35 (MQ=255) CTTCCGTAACGTTGAAGCCTCATTTGAGCTGAacg > 1:15307153‑M1/1‑35 (MQ=255) | ATAACGCGAGTCGCGAAGTGGAGTCCCGTTTTGACTTCCGTAACGTTGAAGCCTCATTTGAGCTGAACG > REL606/413163‑413231 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |