Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,462,320 IS150 (–) +3 bp 90.4% intergenic (‑82/‑257) mokB ← / → trg regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)66 (0.700) 36/44 NT 89.1% noncoding (1/1443 nt) IS150 repeat region
?REL606 1462320 = 7 (0.090)intergenic (‑82/‑259) mokB/trg regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor
* ? REL606 = 666130NA (NA)66 (0.640) 36/48 NT 89.2% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 1462322 7 (0.080)intergenic (‑84/‑257) mokB/trg regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor

Only 100 of 136 total aligned reads displayed.

CCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/664721‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGG  >  REL606/1462320‑1462353
                                                                    
CCATTTCATCGTCCAACAAAATTGGTGCAGTACAG                                   >  1:7202488/1‑35
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                   <  1:10345599/35‑1
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                   <  1:15826815/35‑1
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                   <  1:697681/35‑1
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                   <  1:584777/35‑1
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                   >  1:11435258/1‑35
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                   <  1:11611526/35‑1
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                   >  1:11807593/1‑35
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                   >  1:19122176/1‑35
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                   >  1:17802488/1‑35
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                   <  1:17591989/35‑1
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                   >  1:1716695/1‑35
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                   >  1:4032766/1‑35
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                   >  1:12580894/1‑35
 CATTTCATCGTCCAACAAAATGTGTGCAGTACAGG                                  >  1:8505407/1‑35
 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGG                                  <  1:14294085/35‑1
 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGG                                  >  1:2086510/1‑35
 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGG                                  >  1:19692104/1‑35
 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGG                                  <  1:15756270/35‑1
 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGG                                  <  1:14739516/35‑1
 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGG                                  >  1:19822180/1‑35
 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGG                                  <  1:14072504/35‑1
 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGG                                  >  1:12543300/1‑35
 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGG                                  >  1:5148817/1‑35
 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGG                                  <  1:5199880/35‑1
 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGG                                  >  1:8787141/1‑35
  ATTTCATCGTCCAACAAAATGGGTGCAGTACAGcg                                 <  1:18042226/35‑3
  ATTTCATCGTCCAACAAAATGGGTGCAGTACAGcg                                 >  1:16253565/1‑33
  ATTTCATCGTCCAACAAAATGGGTGCAGTACAGGC                                 >  1:14497324/1‑35
  ATTTCATCGTCCAACAAAATGGGTGCAGTACAGGC                                 >  1:526751/1‑35
   TTTCATAGTCCAACAAAATGGGTGCAGTACAGGCA                                <  1:13543637/35‑1
    TTCATCGTCCAACAAAATGGGTGCAGTACAGGCAC                               >  1:1787087/1‑35
    TTCATCGTCCAACAAAATGGGTGCAGTACAGGCAC                               <  1:2198984/35‑1
     TCATCGTCCAACAAAATGGGTGCAGTACAGGCACC                              >  1:4712710/1‑35
      CATCGTCCAACAAAATGGGTGCAGTACAGGCACCC                             <  1:2525105/35‑1
      CATCGTCCAACAAAATGGGTGCAGTACAGGCACCC                             <  1:9957537/35‑1
       ATCGTCGAACAAAATGGGTGCAGTACAGGCACCCG                            <  1:14604274/35‑1
       ATCGTCCAACAAAATGGGTGCAGTACAGGCACCCG                            >  1:19097388/1‑35
       ATCGTCCAACAAAATGGGTGCAGTACAGGCACCCG                            <  1:15268143/35‑1
        TCGTCCAACAAAATGGGTGCAGTACAGGCACCCGC                           >  1:17584995/1‑35
        TCGTCCAACAAAATGGGTGCAGTACAGGCACCCGC                           >  1:1237689/1‑35
         CGTCCAACAAAATGGGTGCAGTACAGGCACCCGCA                          <  1:5047936/35‑1
          GTCCAACAAAATGGGTGCAGTACAGGCACCCGCAG                         >  1:12669882/1‑35
          GTCCAACAAAATGGGTGCAGTACAGGCACCCGCAG                         >  1:13022892/1‑35
          GTCCAACAAAATGGGTGCAGTACAGGCACCCGCAG                         >  1:8001610/1‑35
           TCCAACAAAATGGGTGCAGTACAGGCACCCGCAGG                        <  1:6595068/35‑1
           TCCAACAAAATGGGTGCAGTACAGGCACCCGCAGG                        <  1:3150201/35‑1
           TCCAACAAAATGGGTGCAGTACAGGCACCCGCAGG                        >  1:15240031/1‑35
           TCCAACAAAATGGGTGCAGTACAGGCACCCGCAGG                        <  1:3557805/35‑1
            CCAACAAAATGGGTGCAGTACAGGCACCCGCAGGC                       >  1:11395936/1‑35
             CAACAAAATGGGTGCAGTACAGGCACCCGCAGGCA                      >  1:16083710/1‑35
             CAACAAAATGGGTGCAGTACAGGCACCCGCAGGCA                      >  1:17387310/1‑35
             CAACAAAATGGGTGCAGTACAGGCACCCGCAGGCA                      >  1:7058757/1‑35
             CAACAAAATGGGTGCAGTACAGGCACCCGCAGGCA                      <  1:1502576/35‑1
              AACAAAATGGGTGCAGTACAGGCACCCGCAGGCAT                     <  1:3311998/35‑1
               ACAAAATGGGTGCAGTACAGGCACCCGCAGGCATC                    <  1:2629097/35‑1
               ACAAAATGGGTGCAGTACAGGCACCCGCAGGCATC                    <  1:3568065/35‑1
               ACAAAATGGGTGCAGTACAGGCACCCGCAGGCATC                    >  1:17567007/1‑35
               ACAAAATGGGTGCAGTACAGGCACCCGCAGGCATC                    >  1:913197/1‑35
               ACAAAATGGGTGCAGTACAGGCACCAGCAGGCATC                    <  1:20131869/35‑1
                CAAAATGGGTGCAGTACAGGCACCCGCAGGCATCC                   <  1:11239397/35‑1
                CAAAATGGGTGCAGTACAGGCACCCGCAGGCATCC                   <  1:6104209/35‑1
                 AAAATGGGTGCAGTACAGGCACCCGCAGGCATCCT                  <  1:4229211/35‑1
                 AAAATGGGTGCAGTACAGGCACCCGCAGGCATCCT                  <  1:5971943/35‑1
                 AAAATGGGTGCAGTACAGGCACCCGCAGGCATCCT                  <  1:7394245/35‑1
                 AAAATGGGTGCAGTACAGGCACCCGCAGGCATCCT                  >  1:9805231/1‑35
                 AAAATGGGTGCAGTACAGGCACCCGCAGGCATCCT                  >  1:11882041/1‑35
                  AAATGGGTGCAGTACAGGCACCCGCAGGCATCCTA                 >  1:19705244/1‑35
                  AAATGGGTGCAGTACAGGCACCCGCAGGCATCCTA                 >  1:7459830/1‑35
                    ATGGGTGCAGTACAGGCACCCGCATGCATCCTATG               >  1:16172177/1‑35
                     TGGGTGCAGTACAGGCACCCGCAGGCATCCTATGA              <  1:11041915/35‑1
                      GGGTGCAGTACAGGCACCCGCAGGCATCCTATGAG             >  1:4712252/1‑35
                      GGGTGCAGTACAGGCACCCGCAGGCATCCTATGAG             >  1:14858471/1‑35
                      GGGTGCAGTACAGGCACCCGCAGGCATCCTATGAG             >  1:18638296/1‑35
                       GGTGCAGTACAGGCACCCGCAGGCATCCTATGAGG            <  1:10038697/35‑1
                       GGTGCAGTACAGGCACCCGCAGGCATCCTATGAGG            >  1:3040985/1‑35
                        GTGCAGTACAGGCACCCGCAGGCATCCTATGCGGT           <  1:5073581/35‑1
                        GTGCAGTACAGGCACCCGCAGGCATCCTATGAGGT           <  1:16600723/35‑1
                        GTGCAGTACAGGCACCCGCAGGCATCCTATGAGGT           >  1:16179427/1‑35
                         TGCAGTACAGGCACCCGCAGGCATCCTATGAGGTT          >  1:9208401/1‑35
                         TGCAGTACAGGCACCCGCAGGCATCCTATGAGGTT          >  1:7737440/1‑35
                          GCAGTACAGGCACCCGCAGGCATCCTATGAGGTTT         >  1:5823123/1‑35
                          GCAGTACAGGCACCCGCAGGCATCCTATGAGGTTT         <  1:2728830/35‑1
                          GCAGTACAGGCACCCGCAGGCATCCTATGAGGTTT         <  1:12917040/35‑1
                            AGTACAGGCACCCGCAGGCATCCTATGAGGTTTCC       >  1:19685279/1‑35
                            AGTACAGGCACCCGCAGGCATCCTATGAGGTTTCC       >  1:12093406/1‑35
                             GTACAGGCCCCCGCAGGCATCCTATGAGGTTTCCT      <  1:8354529/35‑1
                              TACAGGCACCCGCAGGCATCCTATGAGGTTTCCTT     >  1:1935356/1‑35
                              TACAGGCACCCGCAGGCATCCTATGAGGTTTCCTT     <  1:15255429/35‑1
                              TACAGGCACCCGCAGGCATCCTATGAGGTTTCCTT     >  1:8197414/1‑35
                              TACAGGCACCCGCAGGCATCCTATGAGGTTTCCTT     <  1:10430288/35‑1
                              TACAGGCACCCGCAGGCATCCTATGAGGTTTCCTT     <  1:6308772/35‑1
                              TACAGGCACCAGCAGGCATCCTATGAGGTTTCCTT     <  1:10907038/35‑1
                              TACAGGCACACGCAGGCATCCTATGAGGTTTCCTT     <  1:18596494/35‑1
                               ACAGGCACCCGCAGGCATCCTATGAGGTTTGCTTA    >  1:2466412/1‑35
                               ACAGGCACCCGCAGGCATCCTATGAGGTTTCCTTA    >  1:6978422/1‑35
                               ACAGGCACCCGCAGGCATCCTATGAGGTTTCCTTA    <  1:11901819/35‑1
                               ACAGGCACCCGCAGGCATCCTATGAGGTTTCATTA    <  1:15796537/35‑1
                                CAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAG   <  1:17001939/35‑1
                                 AGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGG  <  1:14358239/35‑1
                                                                    
CCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/664721‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGG  >  REL606/1462320‑1462353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.