New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 514780 =90 (0.880)3 (0.050) 3/28 NT 8.3% coding (727/1146 nt) glxK glycerate kinase II
?REL606 1871739 = 14 (0.230)coding (75/1911 nt) yoaA conserved protein with nucleoside triphosphate hydrolase domain

GCCGCAATACCCATACCGCCCGCAGCGCCGCCGCCCGCCATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/514823‑514780
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccatctgTCGCTGTGGTTCTCGCGGCTTAAAGCCTGGTATC  >  REL606/1871739‑1871772
                                                                              
GCCGCAATACCCATACCGCCCGCAGCGCCGCCGCC                                             >  1:12942430/1‑35
 CCGCAATACCCATACCGCCCGCAGCGCCGCCGCCC                                            >  1:16247189/1‑35
 CCGCAATACCCATACCGCCCGCAGCGCCGCCGCCC                                            >  1:12957009/1‑35
 CCGCAATACCCATACCGCCCGCAGCGCCGCCGCCC                                            >  1:3979638/1‑35
  CGCAATACCCATACCGCCCGCAGCGCCGCCGCCCG                                           >  1:19422811/1‑35
   GCAATACCCATACCGCCCGCAGCGCCGCCGCCCGC                                          >  1:9087075/1‑35
   GCAATACCCATACCGCCCGCAGCGCCGCCGCCCGC                                          >  1:8517338/1‑35
    CAATACCCATACCGCCCGCAGCGCCGCCGCCCGCC                                         >  1:14494216/1‑35
    CAATACCCATACCGCCCGCAGCGCCGCCGCCCGCC                                         >  1:19801778/1‑35
    CAATACCCATACCGCCCGCAGCGCCGCCGCCCGCC                                         >  1:12449572/1‑35
     AATACCCATACCGCCCGCAGCGCCGCCGCCCGCCA                                        >  1:10966993/1‑35
      ATACCCATACCGCCCGCAGCGCCGCCGCCCGCCAT                                       >  1:10218001/1‑35
       TACCCATACCTCCCGCAGCGCCGCCGCCCGCCATC                                      >  1:11446334/1‑35
       TACCCATACCGCCCGCAGCGCCGCCGCCCGCCATC                                      >  1:15788155/1‑35
         CCCATACCGCCCGCAGCGCCGCCGCCCGCCATCTG                                    >  1:6347164/1‑35
                          GCCGCCTCCCGCCATCTGTCGCTGTGGTTCTCGCG                   <  1:7131828/35‑1
                           CCGCCTCCCGCCATCTGTCGCTGTGGTTCTCGCGG                  <  1:4716095/35‑1
                            CGCCTCCCGCCATCTGTCGCTGTGGTTCTCGCGGC                 <  1:14158055/35‑1
                              gctCCCGCCATCTGTCGCTGTGGTTCTCGCGGCTT               <  1:13858409/32‑1
                              gctCCCGCCATCTGTCGCTGTGGTTCTCGCGGCTT               <  1:11250287/32‑1
                                tCCCGCCATCTGTCGCTGTGGTTCTCGCGGCTTAA             <  1:7365380/34‑1
                                tCCCGCCATCTGTCGCTGTGGTTCTCGCGGCTTAA             <  1:7991570/34‑1
                                 CCCGCCATCTGTCGCTGTGGTTCTCGCGGCTTAAA            <  1:17208693/35‑1
                                 CCCGCCATCTGTCGCTGTGGTTCTCGCGGCTTAAA            <  1:6150779/35‑1
                                 CCCGCCATCTGTCGCTGTGGTTCTCGCGGCTTAAA            <  1:5605228/35‑1
                                 CCCGCCATCTGTCGCTGTGGTTCTCGCGGCTTAAA            <  1:5110079/35‑1
                                  caGCCATCTGTCGCTGTGGTTCTCGCGGCTTAAAG           <  1:241780/33‑1
                                  CCGCCATCTGTCGCTGTGGTTCTCGCGGCTTAAAG           <  1:20193929/35‑1
                                   CGCCATCTGTCGCTGTGGTTCTCGCGGCTTAAAGC          <  1:783318/35‑1
                                   CGCCATCTGTCGCTGTGGTTCTCGCGGCTTAAAGC          <  1:10018240/35‑1
                                   CGCCATCTGTCGCTGTGGTTCTCGCGGCTTAAAGC          <  1:10612336/35‑1
                                   CGCCATCTGTCGCTGTGGTTCTCGCGGCTTAAAGC          <  1:15071661/35‑1
                                   CGCCATCTGTCGCTGTGGTTCTCGCGGCTTAAAGC          <  1:12906909/35‑1
                                    GCCATCTGTCGCTGTGGTTCTCGCGGCTTAAAGCC         <  1:5901218/35‑1
                                    GCCATCTGTCGCTGTGGTTCTCGCGGCTTAAAGCC         <  1:12566607/35‑1
                                     CCATCTGTCGCTGTGGTTCTCGCGGCTTAAAGCCT        <  1:9552715/35‑1
                                     CCATCTGTCGCTGTGGTTCTCGCGGCTTAAAGCCT        <  1:8212171/35‑1
                                      CATCTGTCGCTGTGGTTCTCGCGGCTTAAAGCCTG       <  1:1812372/35‑1
                                      CATCTGTCGCTGTGGTTCTCGCGGCTTAAAGCCTG       <  1:13381616/35‑1
                                       ATCTGTCGCTGTGGTTCTCGCGGCTTAAAGCCTGG      <  1:7364137/35‑1
                                       ATCTGTCGCTGTGGTTCTCGCGGCTTAAAGCCTGG      <  1:2027094/35‑1
                                        TCTGTCGCTGTGGTTCTCGCGGCTTAAAGCCTGGT     <  1:6332921/35‑1
                                        TCTGTCGCTGTGGTTCTCGCGGCTTAAAGCCTGGT     <  1:17717180/35‑1
                                         CTGTCGCTGTGGTTCTCGCGGCTTAAAGCCTGGTA    <  1:6660471/35‑1
                                          TGTCGCTGTGGTTCTCGCGGCTTAAAGCCTGGTAT   <  1:5993727/35‑1
                                           GTCGCTGTGGTTCTCGCGGCTTAAAGCCTGGTATC  <  1:1385074/35‑1
                                           GTCGCTGTGGTTCTCGCGGCTTAAAGCCTGGTATC  <  1:9666799/35‑1
                                                                              
GCCGCAATACCCATACCGCCCGCAGCGCCGCCGCCCGCCATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/514823‑514780
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccatctgTCGCTGTGGTTCTCGCGGCTTAAAGCCTGGTATC  >  REL606/1871739‑1871772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.