New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 304063997 (0.940)17 (0.220) 5/36 NT 21.2% coding (648/810 nt) pppA bifunctional prepilin leader peptidase/ methylase
?REL606 3224905 = 54 (0.700)coding (858/2517 nt) yraJ predicted outer membrane protein

Only 100 of 142 total aligned reads displayed.

TCGCTTCCGACGATAATATGCTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAA  >  REL606/3224871‑3224939
                                  |                                  
tCGCTTCCGACGATAATATGCTGCCAAAcagccag                                    >  1:18568190/1‑35 (MQ=255)
 cGCTTCCGACGATAATATGCTGCCAAAcagccagc                                   >  1:1122709/1‑35 (MQ=255)
  gCTTCCGACGATAATATGCTGCCAAACAGCCAgcg                                  >  1:8549807/1‑35 (MQ=255)
  gCTTCCGACGATAATATGCTGCCAAACAGCCAgcg                                  >  1:14013556/1‑35 (MQ=255)
  gCTTCCGACGATAATATGCTGCCAAACAGCCAgcg                                  >  1:3601457/1‑35 (MQ=255)
   cTTCCGACGATAATATGCTGCCAAACAGCCAgcgc                                 >  1:12586932/1‑35 (MQ=255)
    ttCCGACGATAATATGCTGCCAAACAGCCAGcgcg                                >  1:17713547/1‑35 (MQ=255)
    ttCCGACGATAATATGCTGCCAAACAGCCAGcgcg                                >  1:6167562/1‑35 (MQ=255)
     tCCGACGATAATATGCTGCCAAACAGCCAGCGCgg                               >  1:19023635/1‑35 (MQ=255)
     tCCGACGATAATATGCTGCCAAACAGCCAGCGCgg                               >  1:19586916/1‑35 (MQ=255)
     tCCGACGATAATATGCTGCCAAACAGCCAGCGCgg                               >  1:5182034/1‑35 (MQ=255)
     tCCGACGATAATATGCTGCCAAACAGCCAGCGCgg                               >  1:5574879/1‑35 (MQ=255)
      ccGACGATAATATGCTGCCAAACAGCCAGCGCGGa                              >  1:20520118/1‑35 (MQ=255)
      ccGACGATAATATGCTGCCAAACAGCCAGCGCGGa                              >  1:19685706/1‑35 (MQ=255)
       cgacgaTAATATGCTGCCAAACAGCCAGCGCGGAt                             >  1:5784507/1‑35 (MQ=255)
       cgacgaTAATATGCTGCCAAACAGCCAGCGCGGAt                             >  1:16937650/1‑35 (MQ=255)
       cgacgaTAATATGCTGCCAAACAGCCAGCGCGGAt                             >  1:4090416/1‑35 (MQ=255)
       cgacgaTAATATGCTGCCAAACAGCCAGCGCGGAt                             >  1:11290503/1‑35 (MQ=255)
       cgacgaTAATATGCTGCCAAACAGCCAGCGCGGAt                             >  1:8728910/1‑35 (MQ=255)
        gacgaTAATATGCTGCCAAACAGCCAGCGCGGAtt                            >  1:3108314/1‑35 (MQ=255)
        gacgaTAATATGCTGCCAAACAGCCAGCGCGGAtt                            >  1:9576829/1‑35 (MQ=255)
        gacgaTAATATGCTGCCAAACAGCCAGCGCGGAtt                            >  1:16622907/1‑35 (MQ=255)
         acgaTAATATGCTGCCAAACAGCCAGCGCGGAttt                           >  1:579552/1‑35 (MQ=255)
         acgaTAATATGCTGCCAAACAGCCAGCGCGGAttt                           >  1:5885936/1‑35 (MQ=255)
         acgaTAATATGCTGCCAAACAGCCAGCGCGGAttt                           >  1:18506312/1‑35 (MQ=255)
          cgaTAATATGCTGCCAAACAGCCAGCGCGGATTTg                          >  1:10149991/1‑35 (MQ=255)
           gaTAATATGCTGCCAAACAGCCAGCGCGGATTTGc                         >  1:4788117/1‑35 (MQ=255)
           gaTAATATGCTGCCAAACAGCCAGCGCGGATTTGc                         >  1:9613237/1‑35 (MQ=255)
           gaTAATATGCTGCCAAACAGCCAGCGCGGATTTGc                         >  1:13866862/1‑35 (MQ=255)
            ataataTTCTGCCAAACAGCCAGCGCGGATTTGcc                        >  1:18244603/1‑35 (MQ=255)
            ataataTGCTGCCAAACAGCCAGCGCGGATTTGcc                        >  1:7953419/1‑35 (MQ=255)
             taataTGCTGCCAAACAGCCAGCGCGGATTTGccc                       >  1:10196063/1‑35 (MQ=255)
              aataTGCTGCCAAACAGCCAGCGCGGATTTGcccc                      >  1:7473548/1‑35 (MQ=255)
              aataTGCTGCCAAACAGCCAGCGCGGATTTGcccc                      >  1:8416449/1‑35 (MQ=255)
              aataTGCTGCCAAACAGCCAGCGCGGATTTGcccc                      >  1:1748769/1‑35 (MQ=255)
               atatGCTGCCAAACAGCCAGCGCGGATTTGCCCCa                     >  1:19581981/1‑35 (MQ=255)
               atatGCTGCCAAACAGCCAGCGCGGATTTGCCCCa                     >  1:4697642/1‑35 (MQ=255)
                tatGCTGCCAAACAGCCAGCGCGGATTTGCCCCaa                    >  1:13837301/1‑35 (MQ=255)
                tatGCTGCCAAACAGCCAGCGCGGATTTGCCCCaa                    >  1:17083534/1‑35 (MQ=255)
                 acgcccccaaccagccaGCGCGGATTTGCCCCAAc                   <  1:13334631‑M2/18‑1 (MQ=255)
                 acccccccacccagccaGCGCGGATTTGCCCCAAc                   <  1:14210319‑M2/18‑1 (MQ=255)
                  tgctgcCAAACAGCCAGCGCGGATTTGCCCCAACg                  >  1:15703276/1‑35 (MQ=255)
                  tgctgcCAAACAGCCAGCGCGGATTTGCCCCAACg                  >  1:7656087/1‑35 (MQ=255)
                   gctgcCAAACAGCCGGCGCGGATTTGCCCCAACgg                 >  1:15128009/1‑35 (MQ=255)
                   gctgcCAAACAGCCAGCGCGGATTTGCCCCAACgg                 >  1:15715871/1‑35 (MQ=255)
                   gctgcCAAACAGCCAGCGCGGATTTGCCCCAACgg                 >  1:15202046/1‑35 (MQ=255)
                   gcccccacccagccaGCGCGGATTTGCCCCAACgg                 <  1:10627634‑M2/20‑1 (MQ=255)
                   gcccccacccagccaGCGCGGATTTGCCCCAACgg                 <  1:5717603‑M2/20‑1 (MQ=255)
                   gcacccacccagccaGCGCGGATTTGCCCCAACgg                 <  1:12857338‑M2/20‑1 (MQ=255)
                   ccccccacccagccaGCGCGGATTTGCCCCAACgg                 <  1:17683028‑M2/20‑1 (MQ=255)
                   ccccccacccagccaGCGCGGATTTGCCCCAACgg                 <  1:9301780‑M2/20‑1 (MQ=255)
                   ccccccacccagccaGCGCGGATTTGCCCCAACgg                 <  1:3703897‑M2/20‑1 (MQ=255)
                    ctgcCAAACAGCCAGCGCGGATTTGCCCCAACGGt                >  1:14405274/1‑35 (MQ=255)
                    ctgcCAAACAGCCAGCGCGGATTTGCCCCAACGGt                >  1:13969488/1‑35 (MQ=255)
                    cccccacccagccaGCGCGGATTTGCCCCAACGGt                <  1:19894792‑M2/21‑1 (MQ=255)
                    cccccacccagccaGCGCGGATTTGCCCCAACGGt                <  1:1692492‑M2/21‑1 (MQ=255)
                     tgcCAAACAGCCAGCGCGGATTTGCCCCAACggga               >  1:8193729/1‑33 (MQ=255)
                     ccccccccagccaGCGCGGATTTGCCCCAACGGTa               <  1:4383169‑M2/22‑1 (MQ=255)
                     ccccacccagccaGCGCGGATTTGCCCCAACGGTa               <  1:17235531‑M2/22‑1 (MQ=255)
                      gcCAAACAGCCAGCGCGGATTTGCCCCAACGGTAc              >  1:6650504/1‑35 (MQ=255)
                      cccacccagccaGCGCGGATTTGCCCCAACGGTAc              <  1:4475286‑M2/23‑1 (MQ=255)
                      cccacccagccaGCGCGGATTTGCCCCAACGGTAc              <  1:2481547‑M2/23‑1 (MQ=255)
                       ccAAACAGCCAGCGCGGATTTGCCCCAACGGTAcg             >  1:1696769/1‑35 (MQ=255)
                        cAAACAGCCAGCGCGGATTTGCCCCAACGGTAcgc            >  1:8801300/1‑35 (MQ=255)
                        cAAACAGCCAGCGCGGATTTGCCCCAACGGTAcgc            >  1:12590772/1‑35 (MQ=255)
                         acccagccaGCGCGGATTTGCCCCAACGGTAcgcg           <  1:5540549‑M2/26‑1 (MQ=255)
                         aaaCAGCCAGCGCGGATTTGCCCCAACGGTAcgcg           >  1:11083235/1‑35 (MQ=255)
                          cccagccaGCGCGGATTTGCCCCAACGGTACGCgg          <  1:17896658‑M2/27‑1 (MQ=255)
                          cccagccaGCGCGGATTTGCCCCAACGGTACGCgg          <  1:3207811‑M2/27‑1 (MQ=255)
                          cccagccaGCGCGGATTTGCCCCAACGGTACGCgg          <  1:17943456‑M2/27‑1 (MQ=255)
                          cccagccaGCGCGGATTTGCCCCAACGGTACGCgg          <  1:16312711‑M2/27‑1 (MQ=255)
                          accagccaGCGGGGATTTGCCCCAACGGTACGCgg          <  1:7532043‑M2/27‑1 (MQ=255)
                          accagccaGCGCGGATTTGCCCCAACGGTACGCgg          <  1:3805004‑M2/27‑1 (MQ=255)
                          aaCAGCCAGCGCGGATTTTCCCCAACGGTACGCgg          >  1:9271411/1‑35 (MQ=255)
                           ccagccaGCGCGGATTTGCCCCAACGGTACGCGGt         <  1:19870804‑M2/28‑1 (MQ=255)
                           ccagccaGCGCGGATTTGCCCCAACGGTACGCGGt         <  1:1487574‑M2/28‑1 (MQ=255)
                            cagccaGCGCGGATTTGCCCCAACGGTACGCGGTa        >  1:8056085‑M2/7‑35 (MQ=255)
                            cagccaGCGCGGATTTGCCCCAACGGTACGCGGTa        <  1:6066684‑M2/29‑1 (MQ=255)
                             agccaGCGCGGATTTGCCCCAACGGTACGCGGTAt       >  1:5659997‑M2/6‑35 (MQ=255)
                             agccaGCGCGGATTTGCCCCAACGGTACGCGGTAt       >  1:18040797‑M2/6‑35 (MQ=255)
                             agccaGCGCGGATTTGCCCCAACGGTACGCGGTAt       >  1:18638649‑M2/6‑35 (MQ=255)
                              gccaGCGCGGATTTGCCCCAACGGTACGCGGTATc      <  1:16169703‑M2/31‑1 (MQ=255)
                              gccaGCGCGGATTTGCCCCAACGGTACGCGGTATc      <  1:11902399‑M2/31‑1 (MQ=255)
                              gccaGCGCGGATTTGCCCCAACGGTACGCGGTATc      >  1:5386961‑M2/5‑35 (MQ=255)
                              gccaGCGCGGATTTGCCCCAACGGTACGCGGTATc      <  1:15449437‑M2/31‑1 (MQ=255)
                               ccaGCGCGGATTTGCCCCAACGGTACGCGGTATCg     <  1:10100476‑M2/32‑1 (MQ=255)
                               ccaGCGCGGATTTGCCCCAACGGTACGCGGTATCg     <  1:2370892‑M2/32‑1 (MQ=255)
                               ccaGCGCGGATTTGCCCCAACGGTACGCGGTATCg     <  1:8208414‑M2/32‑1 (MQ=255)
                               ccaGCGCGGATTTGCCCCAACGGTACGCGGTATCg     <  1:3055189‑M2/32‑1 (MQ=255)
                               ccaGCGCGGATTTGCCCCAACGGTACGCGGTATCg     <  1:13344123‑M2/32‑1 (MQ=255)
                               ccaGCGCGGATTTGCCCCAACGGTACGCGGTATCg     <  1:11657809‑M2/32‑1 (MQ=255)
                                caGCGCGTATTTGCCCCAACGGTACGCGGTATCGc    >  1:465975‑M2/3‑35 (MQ=255)
                                caGCGCGGATTTGCCCCAACGGTACGCGGTATCGc    >  1:864839‑M2/3‑35 (MQ=255)
                                caGCGCGGATTTGCCCCAACGGTACGCGGTATCGc    >  1:6660442‑M2/3‑35 (MQ=255)
                                 aGCGCGGATTTGCCCCAACGGTACGCGGTATCGCa   >  1:8080059‑M2/2‑35 (MQ=255)
                                 aGCGCGGATTTGCCCCAACGGTACGCGGTATCGCa   >  1:17669725‑M2/2‑35 (MQ=255)
                                  gcgcGGATTTGCCCCAACGGTACGCGGTATCGCaa  >  1:349487/1‑35 (MQ=255)
                                  gcgcGGATTTGCCCCAACGGTACGCGGTATCGCaa  >  1:2651827/1‑35 (MQ=255)
                                  gcgcGGATTTGCCCCAACGGTACGCGGTATCGCaa  <  1:16074502/35‑1 (MQ=255)
                                  gcgcGGATTTGCCCAAACGGTACGCGGTATCGCaa  <  1:10541256/35‑1 (MQ=255)
                                  |                                  
TCGCTTCCGACGATAATATGCTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAA  >  REL606/3224871‑3224939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.