New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 61503553 (0.520)4 (0.050) 3/38 NT 7.4% coding (157/198 nt) ybdD hypothetical protein
?REL606 = 3625455 58 (0.710)pseudogene (8/738 nt) yhjQ b3534; cell division protein (chromosome partitioning ATPase)

Only 100 of 225 total aligned reads displayed.

GGTGATGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCATTCACCAATCCCC  >  REL606/3625421‑3625489
                                  |                                   
ggTGATGGTTGTTGTCCCCACGCCTCCCCGccccc                                     <  1:11112202/35‑1 (MQ=255)
 gTGATGGTTGTTGTCCCCACGCCTCCCCGCCCCCc                                    >  1:6703790‑M2/1‑34 (MQ=255)
 gTGATGTTGTTGTCCCCACGCCTCCCCGccccccc                                   >  1:8897939/1‑35 (MQ=38)
    aTGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTG                                 <  1:14295100‑M1/35‑1 (MQ=255)
     tGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGC                                <  1:15659230‑M1/35‑1 (MQ=255)
      ggTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCa                               >  1:20293186/1‑35 (MQ=255)
      ggTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCa                               >  1:8808409/1‑35 (MQ=255)
      ggTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCa                               <  1:12738087/35‑1 (MQ=255)
        ttgttgTCCCCACGCCTCCCCGCCCCCCCTGCAAt                             <  1:5818437/35‑1 (MQ=255)
           ttgtCCCCACGCCTCCCCGCCCCCCCTGCAATccc                         >  1:16331640/1‑35 (MQ=255)
           ttgtCCCCACGCCTCCCCGCCCCCCCTGCAATccc                         <  1:6867857/35‑1 (MQ=255)
            tgtCCCCACGCCTCCCCGCCCCCCCTGCAATCCCa                        >  1:5542695/1‑35 (MQ=255)
             gtCCCCACGCCTCCCCGCCCCCCCTGCAATCCCAg                       >  1:13713402/1‑35 (MQ=255)
               ccccCCCCCCCCCCCCCCCCCCTGCCATACCCAgg                      <  1:18873960/35‑2 (MQ=2)
               ccccCCCCCCCCCCCCCCCCCCTGCCAGCCCAgcg                     <  1:4933935/35‑3 (MQ=0)
                cccACGCCTCCCCGCCCCCCCTGCAATCCCAGTAc                    <  1:12943112/35‑1 (MQ=255)
                cccACGCCTCCCCGCCCCCCCTGCAATCCCAGTAc                    <  1:4829961/35‑1 (MQ=255)
                 ccACGCCTCCCCGCCCCCCCTGCAATCCCAGTACg                   >  1:12582013/1‑35 (MQ=255)
                  cACGCCTCCCCGCCCCCCCTGCAATCCCAGTACgg                  >  1:5716044/1‑35 (MQ=255)
                   aCGCCTCCCCGCCCCCCCTGCAATCCCAGTACGGc                 <  1:15919240/35‑1 (MQ=255)
                   aCGCCTCCCCGCCCCCCCTGCAATCCCAGTACGGc                 >  1:2753962/1‑35 (MQ=255)
                    cGCCTCCCCGCCCCCCCTGCAATCCCAGTACGGcc                >  1:6062101/1‑35 (MQ=255)
                     gCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCa               <  1:7086372/35‑1 (MQ=255)
                      ccTCCCCGCCCCCCCTGCAATCCCAGTACGGCCAt              >  1:19875507/1‑35 (MQ=255)
                      ccCCCCCGCCCCCCctgccaatgtcggatgcggtg               >  1:15082620‑M2/1‑14 (MQ=255)
                       cTCCCCGCCCCCCCTGCAATCCCAGTACGGCCAtt             >  1:17119849/1‑35 (MQ=255)
                       cTCCCCGCCCCCCCTGCAATCCCAGTACGGCCAtt             >  1:20456641/1‑35 (MQ=255)
                        tCCCCGCCCCCCCTGCAATCCCAGTACGGCCATTc            >  1:12908565/1‑35 (MQ=255)
                        cccccgCCCCCCctgccattcaacggttgaaacca             >  1:3913297‑M2/2‑12 (MQ=255)
                        ccccccCCCCCCctgccattcaacggttgaaacca             >  1:9685832‑M2/2‑12 (MQ=255)
                        ccccccCCCCCCCTGCcattgaaacggatcccggt             <  1:1995988‑M1/34‑20 (MQ=255)
                        cccccaCCCCCCctgccaatgtcggatgcggtgcg             >  1:9233500‑M2/2‑12 (MQ=255)
                        acccccCCCCCCctgccgcagaagttgattgcgat             >  1:8525978‑M2/2‑12 (MQ=255)
                         ccccGCCCCCcctgccgctcacggaaaaactcttc            >  1:1813478‑M2/1‑10 (MQ=255)
                         ccccGCCCCCCctgccattcaacggttgaaaccag            >  1:9786142‑M2/1‑11 (MQ=255)
                         ccccCCCCCCCctgccgcagaagttgattgcgatg            >  1:6320725‑M2/1‑11 (MQ=255)
                         ccccCCCCCCCctgccaatgtcggatgcggtgcga            >  1:9065337‑M2/1‑11 (MQ=255)
                         ccccCCCCCCCCTGCcattgaaacggatcccggtg            <  1:10625689‑M1/35‑21 (MQ=255)
                         ccccCCCCCCCCTGCcattgaaacggatcccggtg            <  1:7546485‑M1/35‑21 (MQ=255)
                          cccGCCCCCCctgccattcaacggttgaaaccagc           >  1:6484225‑M2/1‑10 (MQ=255)
                          cccGCCCCCCCTGCAATCCCAGTACGGCCATTCAc          >  1:5383051/1‑35 (MQ=255)
                          cccGCCCCCCCTGCAATCCCAGTACGGCCATTCAc          >  1:1219027/1‑35 (MQ=255)
                          cccCCCCCCCctgccattcaacggttgaaaccagc           >  1:14419950‑M2/1‑10 (MQ=255)
                          cccCCCCCCCCTGCcattgaaacggatcccggtgc           <  1:10205387‑M1/35‑22 (MQ=255)
                           ccGCCCCCCctgccaatttcggatgcggtgcgagc          >  1:18603571‑M2/1‑9 (MQ=255)
                           ccGCCCCCCctgccaatgtcggatgcggtgcgagc          >  1:4660374‑M2/1‑9 (MQ=255)
                           ccGCCCCCCCTGCcattgaaacggatcccggtgca          <  1:13469155‑M1/35‑23 (MQ=255)
                           ccGCCCCCCCTGCAATCCCAGTACGGCCATTCAcc         >  1:5931982/1‑35 (MQ=255)
                           ccCCCCCCCctgccgcagaagttgattgcgatgga          >  1:7292365‑M2/1‑9 (MQ=255)
                           ccCCCCCCCctgccaatgtcggatgcggtgcgagc          >  1:14016257‑M2/1‑9 (MQ=255)
                            ccccccccctgccgcagaagttgattgcgatggaa         >  1:16029725‑M2/3‑8 (MQ=255)
                            ccccccccctgccacttcaccgtcggcgcgcattt         >  1:3463329‑M2/3‑8 (MQ=255)
                            ccccccccctgCcattgaaacggatcccggtgcaa         <  1:5069608‑M1/33‑24 (MQ=255)
                            cGCCCCCcctgccgctcacggaaaaactcttcgta         >  1:13561984‑M2/1‑7 (MQ=255)
                            cGCCCCCCctgccaatgtcggatgaggtgcgagcg         >  1:7155740‑M2/1‑8 (MQ=255)
                            cGCCCCCCCTGCAATCCCAGTACGGCCATTCACCa        >  1:4338125/1‑35 (MQ=255)
                             tgcccccctgccattcaacggttgaaaccagcctg        >  1:10844572‑M2/3‑7 (MQ=255)
                             gCCCCCCCTGCAATCCCAGTCCGGCCATTCACCaa       <  1:10964256/35‑1 (MQ=255)
                             gCCCCCCCTGCAATCCCAGTACGGCCATTCACCaa       >  1:9635260/1‑35 (MQ=255)
                             cccccccctgccacttcaccgtcggcgcgcatttc        >  1:12664443‑M2/2‑7 (MQ=255)
                             cccccccctGCcattgaaacggatcccggtgcaag        <  1:7222412‑M1/34‑25 (MQ=255)
                             cccccccctGCcattgaaacggatcccggtgcaag        <  1:2482922‑M1/34‑25 (MQ=255)
                              ccccccctgccacttcaccgtcggcgcgcatttca       >  1:19346849‑M2/1‑6 (MQ=255)
                              cccccccTGCcattgaaacggatcccggtgcaagt       <  1:13869767‑M1/35‑26 (MQ=255)
                               ctaccctgccgcagaagttgattgcgatggaacct      >  1:7797552‑M2/4‑5 (MQ=255)
                               cccccctgccgctcacggaaaaactcttcgtaggt      >  1:17514414‑M2/1‑4 (MQ=255)
                               cccccctgccgctcacggaaaaactcttcgtaggt      >  1:2966051‑M2/1‑4 (MQ=255)
                               cccccctgccgctcacggaaaaactcttcgtaggt      >  1:8050182‑M2/1‑4 (MQ=255)
                               cccccctgccacttcaccgtcggcgcgcatttcaa      >  1:8634771‑M2/1‑5 (MQ=255)
                               cccccctgccacttcaccgtcggcgcgcatttcaa      >  1:13638740‑M2/1‑5 (MQ=255)
                               cccccctgccacttcaccgtcggcgcgcatttcaa      >  1:15449872‑M2/1‑5 (MQ=255)
                               cccccctgccacttcaccgtcggcgcgcatttcaa      >  1:8417468‑M2/1‑5 (MQ=255)
                               cccccctgccaatgtcggatgcggtgcgagcgcct      >  1:5353572‑M2/1‑5 (MQ=255)
                               ccccccTGCcattgaaacggatcccggtgcaagtg      <  1:10130357‑M1/35‑27 (MQ=255)
                               ccccccTGCcattgaaacggatcccggtgcaagtg      <  1:376980‑M1/35‑27 (MQ=255)
                               ccccccTGCAATCCCAGTCCGGCCATTCACCAATc     <  1:7863695/35‑1 (MQ=255)
                                ccccctgccgctcacggaaaaactcttcgtaggtc     >  1:15546750‑M2/1‑3 (MQ=255)
                                ccccctgccgcagaagttgattgcgatggaacctc     >  1:16779454‑M2/1‑4 (MQ=255)
                                ccccctgccgcagaagttgattgcgatggaacctc     >  1:1693778‑M2/1‑4 (MQ=255)
                                ccccctgccacttcaccgtcggcgcgcatttcaat     >  1:3709337‑M2/1‑4 (MQ=255)
                                ccccctgccacttcaccgtcggcgcgcatttcaat     >  1:18378869‑M2/1‑4 (MQ=255)
                                ccccctgccaatgtcggatgcggtgcgagcgcctt     >  1:19553644‑M2/1‑4 (MQ=255)
                                ccccctgccaatgtcggatgcggtgcgagcgcctt     >  1:14884796‑M2/1‑4 (MQ=255)
                                cccccTGCAATCCCAGTACGGCCATTCACCAATcc    >  1:13455153/1‑35 (MQ=255)
                                 cccctgccgctcacggaaaaactcttcgtaggtca    >  1:16848837‑M2/1‑2 (MQ=255)
                                 cccctgccgcagaagttgattgcgatggaacctcc    >  1:955876‑M2/1‑3 (MQ=255)
                                 cccctgccgcagaagttgattgcgatggaacctcc    >  1:12878756‑M2/1‑3 (MQ=255)
                                 cccctgccattcaacggttgaaaccagcctgctac    >  1:19127598‑M2/1‑3 (MQ=255)
                                 cccctgccattcaacggttgaaaccagcctgctac    >  1:11724850‑M2/1‑3 (MQ=255)
                                 cccctgccacttcaccgtcggcgcgcatttcaata    >  1:6222435‑M2/1‑3 (MQ=255)
                                 cccctgccaatgtcggatgcggtgcgagcgcctta    >  1:11311602‑M2/1‑3 (MQ=255)
                                 ccccTGCcattgaaacggatcccggtgcaagtgcc    <  1:3100798‑M1/35‑29 (MQ=255)
                                 ccccTGCcattgaaacggatcccggtgcaagtgcc    <  1:17840025‑M1/35‑29 (MQ=255)
                                  ccctgccgctcacggaaaaactcttcgtaggtcat   >  1:2161037‑M2/1‑1 (MQ=255)
                                  ccctgccgcagaagttgattgcgatggaacctcca   >  1:16496884‑M2/1‑2 (MQ=255)
                                  ccctgccacttcaccgtcggcgcgcatttcaatat   >  1:15323672‑M2/1‑2 (MQ=255)
                                  cccTGCcattgaaacggatcccggtgcaagtgcct   <  1:104660‑M1/35‑30 (MQ=255)
                                  cccTGCcattgaaacggatcccggtgcaagtgcct   <  1:13326347‑M1/35‑30 (MQ=255)
                                  cccTGCAATCCCAGTACGGCCATTCACCAATcccc  >  1:9263060/1‑35 (MQ=255)
                                  cccGGCAACCCCAGTACGGCCATTCACCAATcccc  <  1:17310965/35‑1 (MQ=37)
                                  |                                   
GGTGATGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCATTCACCAATCCCC  >  REL606/3625421‑3625489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.