New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3820609 =84 (0.820)7 (0.100) 3/34 NT 12.1% coding (425/924 nt) yidL predicted DNA‑binding transcriptional regulator
?REL606 = 4248913 42 (0.580)coding (568/714 nt) aphA acid phosphatase/phosphotransferase, class B, non‑specific

TTCAGCAACTTCAGTGAGTTCCTGATTATAAATTTCGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3820649‑3820609
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccatAAAAAATTCGGATATTTTTATCCTGCAGCCATTG  <  REL606/4248913‑4248880
                                                                           
TTCAGCAACTTCAGTGAGTTCCTGATTATAAATTT                                          <  1:9716009/35‑1
TTCAGCAACTTCAGTGAGTTCCTGATTATAAATTT                                          >  1:1734467/1‑35
 TCAGCAACTTCAGTGAGTTCCTGATTATAAATTTC                                         <  1:9559782/35‑1
 TCAGCAACTTCAGTGAGTTCCTGATTATAAATTTC                                         <  1:3206827/35‑1
 TCAGCAACTTCAGTGAGTTCCTGATTATAAATTTC                                         <  1:5130274/35‑1
 TCAGCAACTTCAGTGAGTTCCTGATTATAAATTTC                                         >  1:16234060/1‑35
 TCAGCAACTTCAGTGAGTTCCTGATTATAAATTTC                                         <  1:8192575/35‑1
 TCAGCAACTTCAGTGAGTTCATGATTATAAATTTC                                         <  1:15813567/35‑1
  CAGCAACTTCAGTGAGTTCCTGATTATAAATTTCG                                        <  1:4459323/35‑1
  CAGCAACTTCAGTGAGTTCCTGATTATAAATTTCG                                        >  1:19230595/1‑35
  CAGCAACTTCAGTGAGTTCCTGATTATAAATTTCG                                        >  1:18181682/1‑35
  CAGCAACTTCAGTGAGTTCCTGATTATAAATTTCG                                        <  1:17888651/35‑1
  CAGCAACTTCAGTGAGTTCCTGATTATAAATTTCG                                        >  1:17732226/1‑35
   AGCAACTTCAGTGAGTTCCTGATTATAAATTTCGC                                       >  1:4279660/1‑35
   AGCAACTTCAGTGAGTTCCTGATTATAAATTTCGC                                       >  1:3275426/1‑35
   AGCAACTTCAGTGAGTTCCTGATTATAAATTTCGC                                       >  1:3231685/1‑35
   AGCAACTTCAGTGAGTTCCTGATTATAAATTTCGC                                       >  1:10075964/1‑35
   AGCAACTTCAGTGAGTTCCTGATTATAAATTTCGC                                       <  1:13160153/35‑1
   AGCAACTTCAGTGAGTTCCTGATTATAAATTTCGC                                       <  1:13634113/35‑1
    GCAACTTCAGTGAGTTCCTGATTATAAATTTCGCC                                      <  1:9825054/35‑1
    GCAACTTCAGTGAGTTCCTGATTATAAATTTCGCC                                      >  1:17946787/1‑35
    GCAACTTCAGTGAGTTCCTGATTATAAATTTCGCC                                      >  1:17827714/1‑35
    GCAACTTCAGTGAGTTCCTGATTATAAATTTCGCC                                      <  1:7088892/35‑1
     CAACTTCAGTGAGTTCCTGATTATAAATTTCGCCA                                     >  1:10509807/1‑35
     CAACTTCAGTGAGTTCCTGATTATAAATTTCGCCA                                     >  1:10725582/1‑35
     CAACTTCAGTGAGTTCCTGATTATAAATTTCGCCA                                     >  1:8616836/1‑35
     CAACTTCAGTGAGTTCCTGATTATAAATTTCGCCA                                     <  1:2304682/35‑1
      AACTTCAGTGAGTTCCTGATTATAAATTTCGCCAT                                    >  1:7343612/1‑35
      AACTTCAGTGAGTTCCTGATTATAAATTTCGCCAT                                    >  1:1507088/1‑35
      AACTTCAGTGAGTTCCTGATTATAAATTTCGCCAT                                    >  1:5561779/1‑35
                       aATTATAATTTTCGCCATAAAAAATTCGGATATTT                   <  1:14121080/34‑1
                       aATTATAAGTTTCGCCATAAAAAATTCGGATATTT                   <  1:15657991/34‑1
                        ATTATAATTTTCGCCATAAAAAATTCGGATATTTT                  <  1:5475791/35‑1
                        ATTATAATTTTCGCCATAAAAAATTCGGATATTTT                  <  1:13713380/35‑1
                          TATAATTTTCGCCATAAAAAATTCGGATATTTTTA                <  1:7664345/35‑1
                           tTAATTTTCGCCATAAAAAATTCGGATATTTTTAT               <  1:14252996/34‑1
                           ATAATTTTCGCCATAAAAAATTCGGATATTTTTAT               <  1:5860789/35‑1
                               ATTTCGCCATAAAAAATTCGGATATTTTTATCCTG           <  1:838534/35‑1
                                TTTCGCCATAAAAAATTCGGATATTTTTATCCTGC          <  1:9325125/35‑1
                                 gTCGCCATAAAAAATTCGGATATTTTTATCCTGCA         <  1:9471682/34‑1
                                 TTCGCCATAAAAAATTCGGATATTTTTATCCTGCA         <  1:14047611/35‑1
                                 TTCGCCATAAAAAATTCGGATATTTTTATCCTGCA         <  1:19507092/35‑1
                                  TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG        >  1:9602989/1‑35
                                  TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG        >  1:11191661/1‑35
                                  TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG        >  1:5542878/1‑35
                                  TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG        <  1:17392060/35‑1
                                  TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG        >  1:17078098/1‑35
                                  TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG        <  1:7842982/35‑1
                                  TCGCCATAAAAAATTCGGATATTTTTATCCTGCAG        <  1:16062957/35‑1
                                   CGCCATAAAAAATTCGGATATTTTTATCCTGCAGC       >  1:14941281/1‑35
                                   CGCCATAAAAAATTCGGATATTTTTATCCTGCAGC       >  1:3972729/1‑35
                                    GCCATAAAAAATTCGGATATTTTTATCCTGCAGCC      >  1:15086578/1‑35
                                    GCCATAAAAAATTCGGATATTTTTATCCTGCAGCC      >  1:1973674/1‑35
                                     CCATAAAAAATTCGGATATTTTTATCCTGCAGCCA     <  1:18581216/35‑1
                                     CCATAAAAAATTCGGATATTTTTATCCTGCAGCCA     <  1:9399895/35‑1
                                     CCATAAAAAATTCGGATATTTTTATCCTGCAGCCA     <  1:10018677/35‑1
                                      CATAAAAAATTCGGATATTTTTATCCTGCAGCCAT    >  1:721411/1‑35
                                      CATAAAAAATTCGGATATTTTTATCCTGCAGCCAT    >  1:1594552/1‑35
                                      CATAAAAAATTCGGATATTTTTATCCTGCAGCCAT    >  1:13956868/1‑35
                                      CATAAAAAATTCGGATATTTTTATCCTGCAGCCAT    >  1:3752440/1‑35
                                      CATAAAAAATTCGGATATTTTTATCCTGCAGCAAT    <  1:16605262/35‑1
                                       ATAAAAAATTCGGATATTTTTATCCTGCAGCCATT   >  1:7770036/1‑35
                                       ATAAAAAATTCGGATATTTTTATCCTGCAGCCATT   >  1:9767262/1‑35
                                        TAAAAAATTCGGATATTTTTATCCTGCAGCCATTG  >  1:10258965/1‑35
                                                                           
TTCAGCAACTTCAGTGAGTTCCTGATTATAAATTTCGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3820649‑3820609
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccatAAAAAATTCGGATATTTTTATCCTGCAGCCATTG  <  REL606/4248913‑4248880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.