New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 58340744 (0.430)12 (0.160) 3/34 NT 15.9% coding (546/1377 nt) pheP phenylalanine transporter
?REL606 3882315 = 96 (1.320)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

TGCTGGCGATCATCGGTATGATCGGCTTTGGCCTGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/583367‑583407
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggctgGGGGGTTTTGTG  >  REL606/3882315‑3882326
                                                     
TGCTGGCGATCATCGGTATGATCGGCTTTGGCCTG                    <  1:5508703/35‑1
 GCTGGCGATCATCGGTATGATCGGCTTTGGCCTGT                   <  1:148359/35‑1
 GCTGGCGATCATCGGTATGATCGGCTTTGGCCTGT                   <  1:16162434/35‑1
  CTGGCGATCATCGGTATGATCGGCTTTGGCCTGTG                  <  1:7946696/35‑1
  CTGGCGATCATCGGTATGATCGGCTTTGGCCTGTG                  <  1:3679240/35‑1
   TGGCGATCATCGGTATGATCGGCTTTGGCCTGTGG                 <  1:11862697/35‑1
   TGGCGATCATCGGTATGATCGGCTTTGGCCTGTGG                 <  1:19999517/35‑1
     tCGATCATCGGTATGATCGGCTTTGGCCTGTGGCT               <  1:17045083/34‑1
     GCGATCATCGGTATGATCGGCTTTTGCCTGTGGCT               >  1:17999487/1‑35
      CGATCATCGGTATGATCGGCTTTGGCCTGTGGCTG              <  1:7977722/35‑1
      CGATCATCGGTATGATCGGCTTTGGCCTGTGGCTG              <  1:13238033/35‑1
       GATCATCGGTATGATCGGCTTTGGCCTGGGGCTGG             >  1:10957634/1‑35
         TCATCGGTATGATCGGCTTTGGCCTGTGGCTGatg           <  1:4772216/35‑4
         TCATCGGTATGATCGGCTTTGGCCTGTGGCTGGGG           >  1:11887501/1‑35
         TCATCGGTATGATCGGCTTTGGCCTGTGGCTGGGG           >  1:594318/1‑35
             CGGTATGATCGGCTTTGGCCTGTGGCTGGGGGGTT       >  1:9099797/1‑35
              GGTATGATCGGCTTTGGCCTGTGGCTGGGGGTTTT      >  1:19584172/1‑35
              GGTATGATCGGCTTTGGCCTGTGGCTGGGGGTTTT      >  1:17608560/1‑35
              GGTATGATCGGCTTTGGCCTGTGGCTGGGGGTTTT      >  1:13775473/1‑35
               GTATGATCGGCTTTGGCCTGTGGCTGGGGGGTTTT     >  1:6758062/1‑35
               GTATGATCGGCTTTGGCCTGTGGCTGGGGGGTTTT     >  1:10356438/1‑35
                TATGATCGGCTTTGGCCTGTGGCTGGGGGGTTTTt    >  1:14595613/1‑34
                TATGATCGGCTTTGGCCTGTGGCTGGGGGGTTTTt    >  1:1368012/1‑34
                TATGATCGGCTTTGGCCTGTGGCTGGGGGGTTTTt    >  1:10956825/1‑34
                 ATGATCGGCTTTGGCCTGTGGCTGGGGGGTTTTtg   >  1:11917454/1‑33
                  TGATCGGCTTTGGCCTGTGGCTGGGGGGTTTTttt  >  1:19733766/1‑32
                  TGATCGGCTTTGGCCTGTGGCTGGGGGGTTTTttt  >  1:19089739/1‑32
                                                     
TGCTGGCGATCATCGGTATGATCGGCTTTGGCCTGTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/583367‑583407
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggctgGGGGGTTTTGTG  >  REL606/3882315‑3882326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.