New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 42237147 (1.430)9 (0.100) 4/42 NT 5.9% pseudogene (740/885 nt) caiB crotonobetainyl‑CoA:carnitineCoA‑transferase; b0038_1
?REL606 2742547 = 160 (1.780)coding (1555/1827 nt) hycC NADH dehydrogenase subunit N

Only 100 of 273 total aligned reads displayed.

GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCGGCATGATGTTCGGCCCTTTGCAGGTGCGACCATC  >  REL606/42203‑42271
                                  |                                  
gcgcCAGATTTGTCCGGGGTTATTTTTGAATTTCG                                    <  1:565815‑M1/35‑1 (MQ=255)
gcgcCAGATTTGTCCGGGGTTATTTTTGAATTTCG                                    <  1:16382378‑M1/35‑1 (MQ=255)
gcgcCAGATTTGTCCGGGGTTATTTTTGAATTTCG                                    <  1:13058820‑M1/35‑1 (MQ=255)
gcgcCAGATTTGTCCGGGGTTATTTTTGAATTTCG                                    <  1:12920108‑M1/35‑1 (MQ=255)
 cgcCAGATTTGTCCGGGGTTATTTTTGAATTTCgg                                   >  1:505307/1‑35 (MQ=255)
 cgcCAGATTTGTCCGGGGTTATTTTTGAATTTCgg                                   >  1:13174759/1‑35 (MQ=255)
 cgcCAGATTTGTCCGGGGTTATTTTTGAATTTCgg                                   <  1:6740718/35‑1 (MQ=255)
 cgcCAGATTTGTCCGGGGTTATTTTTGAATTTCgg                                   <  1:16929625/35‑1 (MQ=255)
 cgcCAGATTTGTCCGGGGTTATTTTTGAATTCCgg                                   >  1:19540762/1‑35 (MQ=255)
  gcCAGATTTGTCCGGGGTTATTTTTGAATTTCGGc                                  >  1:20062436/1‑35 (MQ=255)
  gcCAGATTTGTCCGGGGTTATTTTTGAATTTCGGc                                  >  1:1749822/1‑35 (MQ=255)
  gcCAGATTTGTCCGGGGTTATTTTTGAATTTCGGc                                  <  1:4262419/35‑1 (MQ=255)
   ccAGATTTGTCCGGGGTTATTTTTGAATTTCGGCa                                 >  1:8870573/1‑35 (MQ=255)
    cAGATTTGTCCGGGGTTATTTTTGAATTTCGGCat                                <  1:13960525/35‑1 (MQ=255)
     aGATTTGTCCGGGGTTATTTTTGAATTTAGGCatg                               <  1:16138341/35‑1 (MQ=255)
      gATTTGTCCGGGGTTATTTTTGAATTTCGGCatga                              >  1:7605090/1‑35 (MQ=255)
      gATTTGTCCGGGGTTATTTTTGAATTTCGGCatga                              <  1:17626409/35‑1 (MQ=255)
      gATTTGTCCGGGGTTATTTTTGAATTTCGGCatga                              <  1:11922562/35‑1 (MQ=255)
      gATTTGTCCGGGGTTATTTTTAAATTTCGGCatga                              <  1:19557693/35‑1 (MQ=255)
       aTTTGTCCGGGGTTATTTTTGAATTTCGGCatgat                             >  1:1770432/1‑35 (MQ=255)
       aTTTGTCCGGGGTTATTTTTGAATTTCGGCatgat                             >  1:2277581/1‑35 (MQ=255)
       aTTTGTCCGGGGTTATTTTTGAATTTCGGCatgat                             <  1:4567264/35‑1 (MQ=255)
       aTTTGTCCGGGGTTATTTTTGAATTTCGGCatgat                             <  1:15451624/35‑1 (MQ=255)
        tttGTCCGGGGTTATTTTTGAATTTCGGCatgatg                            >  1:2573887/1‑35 (MQ=255)
        tttGTCCGGGGTTATTTTTGAATTTCGGCatgatg                            >  1:14616477/1‑35 (MQ=255)
         ttGTCCGGGGTTATTTTTGAATTTCGGCATGATGt                           <  1:5924963/35‑1 (MQ=255)
         ttGTCCGGGGTTATTTTTGAATTTCGGCATGATGt                           >  1:3428938/1‑35 (MQ=255)
         ttGTCCGGGGTTATTTTTGAATTTCGGCATGATGt                           >  1:14304308/1‑35 (MQ=255)
         ttGTCCGGGGTTATTTTTGAATTTCGGCATGATGt                           >  1:9092239/1‑35 (MQ=255)
          tGTCCGGGGTTATTTTTGAATTTCGGCATGATGtt                          <  1:12576570/35‑1 (MQ=255)
           nnccGNGGTTATTTTTGAATTTCGGCATGATGTTc                         <  1:18625214/33‑1 (MQ=255)
           gTCCGGGGTTATTTTTGAATTTCGGCATGATGTTc                         <  1:13830972/35‑1 (MQ=255)
           gTCCGGGGTTATTTTTGAATTTCGGCATGATGTTc                         >  1:11313307/1‑35 (MQ=255)
             ccGGGGTTATTTTTGAATTTCGGCATGATGTTCgg                       >  1:17025670/1‑35 (MQ=255)
              cGGGGTTATTTTTGAATTTCGGCATGATGTTCGGc                      <  1:10591403/35‑1 (MQ=255)
              cGGGGTTATTTTTGAATTTCGGCATGATGTTCGGc                      >  1:16332664/1‑35 (MQ=255)
              cGGGGTTATTTTTGAATTTCGGCATGATGTTCGGc                      <  1:11266964/35‑1 (MQ=255)
                gggTTATTTTTGAATTTCGGCATGATGTTCGGccc                    <  1:3144568/35‑1 (MQ=255)
                gggTTATTTTTGAATTTCGGCATGATGTTCGGccc                    >  1:4826570/1‑35 (MQ=255)
                  gTTATTTTTGAATTTCGGCATGATGTTCGGCCCtt                  >  1:11109630/1‑35 (MQ=255)
                  gTTATTTTTGAATTTCGGCATGATGTTCGGCCCtt                  >  1:17375288/1‑35 (MQ=255)
                  gTTATTTTTGAATTTCGGCATGATGTTCGGCCCtt                  >  1:16896322/1‑35 (MQ=255)
                  gTTATTTTTGAATTTCGGCATGATGTTCGGCCCtt                  <  1:13116008/35‑1 (MQ=255)
                  gTTATTTTTGAATTTCGGCATGATGTTCGGCCCtt                  <  1:8678252/35‑1 (MQ=255)
                  gTTATTTTTGAATTTCGGCATGATGTTCGCCCCtt                  >  1:12399216/1‑35 (MQ=255)
                   ttATTTTTGAATTTCGGCGTGATGTTCGGCCCttt                 <  1:235938/35‑1 (MQ=255)
                   ttATTTTTGAATTTCGGCATGATGTTCGGCCCttt                 <  1:18101971/35‑1 (MQ=255)
                   ttATTTTTGAATTTCGGCATGATGTTCGGCCCttt                 >  1:18446015/1‑35 (MQ=255)
                    tATTTTTGAATTTCGGCATGATGTTCGGCCCTTTg                >  1:5759711/1‑35 (MQ=255)
                    tATTTTTGAATTTCGGCATGATGTTCGGCCCTTTg                >  1:1003216/1‑35 (MQ=255)
                     aTTTTTGAAGTTCGccataatgatgaatggcagca               <  1:3998121‑M1/35‑22 (MQ=255)
                      tttttGAATTTCGGCATGATGTTCGGCCCTTTGCa              >  1:3697795/1‑35 (MQ=255)
                      tttttGAATTTCGGCATGATGTTCGGCCCTTTGCa              <  1:7036816/35‑1 (MQ=255)
                       ttttGAATTTCGGCATGATGTTCGGCCCTTTGCAg             >  1:6052897/1‑35 (MQ=255)
                       ttttAAATTTCGccataatgatgaatggcagcagc             <  1:8179819‑M1/35‑24 (MQ=255)
                        tttGAATTTCGGCATGATGTTCGGCCCTTTGCAgg            >  1:15266224/1‑35 (MQ=255)
                        tttGAATTTCGGCATGATGTTCGGCCCTTTGCAgg            >  1:10871709/1‑35 (MQ=255)
                        tttGAATTTCGGCATGATGTTCGGCCCTTTGCAgg            <  1:14827136/35‑1 (MQ=255)
                         ttGAATTTCGGCATGATGTTCGGCCCTTTGCAGGt           <  1:179165/35‑1 (MQ=255)
                         ttGAAATTCGccataatgatgaatggcagcagcgg           <  1:7247186‑M1/35‑26 (MQ=255)
                          tGAATTTCGGCATGATGTTCGGCCCTTTGCAGGTg          >  1:3279117/1‑35 (MQ=255)
                          ggaAATTCGccataatgatgaatggcagcagcggg          <  1:12096555‑M1/34‑27 (MQ=255)
                           gAATTTCGGCATGATGTTCGGCCCTTTGCAGGTGc         >  1:13286965/1‑35 (MQ=255)
                           gAATTTCGGCATGATGTTCGGCCCTTTGCAGGTGc         >  1:9399193/1‑35 (MQ=255)
                           gAATTTCGACATGATGTTCGGCCCTTTGCAGGTGc         <  1:4742608/35‑1 (MQ=255)
                            aaTTTCGGCATGATGTTCGGCCCTTTGCAGGTGCg        >  1:8356786/1‑35 (MQ=255)
                            aaTTTCGGCATGATGTTCGGCCCTTTGCAGGTGCg        <  1:5358719/35‑1 (MQ=255)
                            aaTTTCGGCATGATGTTCGGCCCTTTGCAGGTGCg        <  1:6545530/35‑1 (MQ=255)
                             aTTTCGGCATGATGTTCGGCCCTTTGCAGGTGCGa       >  1:7767369/1‑35 (MQ=255)
                             aTTTCGGCATGATGTTCGGCCCTTTGCAGGTGCGa       >  1:9728028/1‑35 (MQ=255)
                             aTTTCGGCATGATGTTCGGCCCTTTGCAGGTGCGa       >  1:10805264/1‑35 (MQ=255)
                             aTTTCAGCACGATGTTCGGCCCTTTGCAGGTGCGa       >  1:647635/1‑35 (MQ=37)
                              tttCGccataatgatgaatggcagcagcgggcagg      <  1:13313985‑M1/35‑31 (MQ=255)
                              attcGccataatgatgaatggcagcagcgggcagg      <  1:20302117‑M1/34‑31 (MQ=255)
                              attcGccataatgatgaatggcagcagcgggcagg      <  1:15013642‑M1/34‑31 (MQ=255)
                               ttCGccataatgatgaatggcagcagcgggcaggc     <  1:14178318‑M1/35‑32 (MQ=255)
                               ttCGGCATGATGTTCGGCCCTTTGCAGGTGCGAcc     >  1:304803/1‑35 (MQ=255)
                                tCGccataatgatgaatggcagcagcgggcaggca    >  1:8424072‑M1/1‑3 (MQ=255)
                                tCGccataatgatgaatggcagcagcgggcaggca    <  1:2057250‑M1/35‑33 (MQ=255)
                                tCGccataatgatgaatggcagcagcgggcaggca    <  1:18809926‑M1/35‑33 (MQ=255)
                                tCGGCATGATGTTCGGCCCTTTGCAGGTGCGAcca    >  1:15641556/1‑35 (MQ=255)
                                tCGGCATGATGTTCGGCCCTTTGCAGGTGCGAcca    <  1:6948261/35‑1 (MQ=255)
                                 cGccataatgatgaatggcaggagcgggcaggcaa   <  1:15858294‑M1/35‑34 (MQ=255)
                                 cGccataatgatgaatggcagcagcgggcagggca   >  1:308626‑M1/1‑2 (MQ=255)
                                 cGccataatgatgaatggcagcagcgggcaggcaa   <  1:16783929‑M1/35‑34 (MQ=255)
                                 cGccataatgatgaatggcagcagcgggcaggcaa   >  1:4194704‑M1/1‑2 (MQ=255)
                                 cGGCATGATGTTCGGCCCTTTGCAGGTGCGAccat   >  1:6686726/1‑35 (MQ=255)
                                 cGGCATGATGTTCGGCCCTTTGCAGGTGCGAccat   >  1:16639698/1‑35 (MQ=255)
                                 cGGCATGATGTTCGGCCCTTTGCAGGTGCGAccat   <  1:18168029/35‑1 (MQ=255)
                                 cGGCATGATGTTCGGCCCTTTGCAGGTGCGAccat   >  1:11400210/1‑35 (MQ=255)
                                  ggCATGATGTTCGGCCCTTTGCAGGTGCGAccatc  >  1:7951601/1‑35 (MQ=255)
                                  ggCATGATGTTCGGCCCTTTGCAGGTGCGAccatc  >  1:20589572/1‑35 (MQ=255)
                                  ggCATGATGTTCGGCCCTTTGCAGGTGCGAccatc  >  1:10323520/1‑35 (MQ=255)
                                  gccataatgatgaatggcagcagcgggcagggaat  >  1:19025149‑M1/1‑1 (MQ=255)
                                  gccataatgatgaatggcagcagcgggcaggcaat  >  1:14541621‑M1/1‑1 (MQ=255)
                                  gccataatgatgaatggcagcagcgggcaggcaat  <  1:12679657‑M1/35‑35 (MQ=255)
                                  gccataatgatgaatggcagcagcgggcaggcaat  >  1:9026311‑M1/1‑1 (MQ=255)
                                  gccataatgatgaatggcagcagcgggcaggcaaa  >  1:6314685‑M1/1‑1 (MQ=255)
                                  gccataatgatgaatagcagcagcgggcaggcaat  <  1:2592241‑M1/35‑35 (MQ=255)
                                  gccataatgacgaatggcagcagcgggcaggcaat  >  1:5451252‑M1/1‑1 (MQ=255)
                                  |                                  
GCGCCAGATTTGTCCGGGGTTATTTTTGAATTTCGGCATGATGTTCGGCCCTTTGCAGGTGCGACCATC  >  REL606/42203‑42271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.