New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2966042 =52 (0.510)5 (0.060) 3/36 NT 9.1% coding (1345/1992 nt) tktA transketolase 1, thiamin‑binding
?REL606 3780481 = 61 (0.790)coding (513/1359 nt) ECB_03520 conserved hypothetical protein

ATGTTCGTGGAATACGCACGTAACGCCGTACGTATGGCTG‑‑‑‑‑‑‑‑  <  REL606/2966081‑2966042
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGGCGGGTG  >  REL606/3780481‑3780488
                                                
ATGTTCGTGGAATACGCACGTAACGCCGTACGTAT               >  1:19907610/1‑35
ATGTTCGTGGAATACGCACGTAACGCCGTACGTAT               >  1:6852265/1‑35
ATGTTCGTGGAATACGCACGTAACGCCGTACGTAT               >  1:19763910/1‑35
ATGTTCGTGGAATACGCACGTAACGCCGTACGTAT               <  1:7301196/35‑1
ATGTTCGTGGAATACGAACGTAACGCCGTACGTAT               <  1:19896304/35‑1
 TGTTCGTGGAATACGCACGTAACGCCGTACGTCTG              >  1:6249314/1‑35
 TGTTCGTGGAATACGCACGTAACGCCGTACGTATG              <  1:408207/35‑1
 TGTTCGTGGAATACGCACGTAACGCCGTACGTATG              >  1:425503/1‑35
 TGTTCGTGGAATACGCACGTAACGCCGTACGTATG              <  1:3242349/35‑1
 TGTTCGTGGAATACGCACGTAACGCCGTACGTATG              <  1:12616366/35‑1
 TGTTCGTGGAATACGCACGTAACGCCGTACGTATG              <  1:12139645/35‑1
 TGTTCGTGGAATACGCACGTAACGCCGTACGTATG              <  1:1115577/35‑1
 TGTTCGTGGAATACGCACGTAACGCCGTACGTATG              >  1:18372197/1‑35
 TGTTCGTGGAATACGCACGTAACGCCGTACGTATG              <  1:10606707/35‑1
  GTTCGTGGAATACGCACGTAACGCCGTACGTATGG             >  1:19505476/1‑35
  GTTCGTGGAATACGCACGTAACGCCGTACGTATGG             >  1:19195993/1‑35
  GTTCGTGGAATACGCACGTAACGCCGTACGTATGG             >  1:18492670/1‑35
  GTTCGTGGAATACGCACGTAACGCCGTACGTATGG             <  1:428577/35‑1
  GTTCGTGGAATACGCACGTAACGCCGTACGTATGG             >  1:5558254/1‑35
  GTTCGTGGAATACGCACGTAACGCCGTACGTATGG             >  1:1402760/1‑35
  GTTCGTGGAATACGCACGTAACGCCGTACGTATGG             <  1:8013778/35‑1
  GTTCGTGGAATACGCACGTAACGCCGTACGTATGG             >  1:10923056/1‑35
   TTCGTGGAATACGCACGTAACGCCGTACGTATGGC            >  1:20101600/1‑35
   TTCGTGGAATACGCACGTAACGCCGTACGTATGGC            <  1:8039084/35‑1
   TTCGTGGAATACGCACGTAACGCCGTACGTATGGC            <  1:8368471/35‑1
   TTCGTGGAATACGCACGTAACGCCGTACGTATGGC            >  1:9066311/1‑35
   TTCGTGGAATACGCACGTAACGCCGTACGTATGGC            <  1:14590324/35‑1
    TCGTGGAATACGCACGTAACGCCGTACTTATGGCT           >  1:8614774/1‑35
    TCGTGGAATACGCACGTAACGCCGTACGTATGGCT           <  1:10796115/35‑1
    TCGTGGAATACGCACGTAACGCCGTACGTATGGCT           >  1:11923494/1‑35
    TCGTGGAATACGCACGTAACGCCGTACGTATGGCT           >  1:12281573/1‑35
    TCGTGGAATACGCACGTAACGCCGTACGTATGGCT           <  1:6537307/35‑1
    TCGTGGAATACGCACGTAACGCCGTACGTATGGCT           <  1:2437809/35‑1
    TCGTGGAATACGCACGTAACGCCGTACGTATGGCT           <  1:16611350/35‑1
     CGTGGAATACGCACGTAATGCCGTACGTATGGCTG          >  1:5108752/1‑35
     CGTGGAATACGCACGTAACGCCGTACGTATGGCTG          >  1:10560517/1‑35
     CGTGGAATACGCACGTAACGCCGTACGTATGGCTG          >  1:341619/1‑35
     CGTGGAATACGCACGTAACGCCGTACGTATGGCTG          >  1:18348798/1‑35
     CGTGGAATACGCACGTAACGCCGTACGTATGGCTG          <  1:19745111/35‑1
     CGTGGAATACGCACGTAACGCCGTACGTATGGCTG          >  1:17515025/1‑35
     CGTGGAATACGCACGTAACGCCGTACGTATGGCTG          >  1:2863671/1‑35
     CGTGGAATACGCACGTAACGCCGTACGTATGGCTG          <  1:16919270/35‑1
      GTGGAATACGCACGTAACGCCGTACGTATGGCTGG         >  1:7099526/1‑35
      GTGGAATACGCACGTAACGCCGTACGTATGGCTGG         >  1:6757410/1‑35
      GTGGAATACGCACGTAACGCCGTACGTATGGCTGG         >  1:13892638/1‑35
       TGGAATACGCACGTAACGCCGTACGTATGGCTGtg        >  1:1676022/1‑33
       TGGAATACGCACGTAACGCCGTACGTATGGCTGGG        >  1:17471403/1‑35
        GGAATACGCACGTAACGCCGTACGTATGGCTGGGg       >  1:435021/1‑34
        GGAATACGCACGTAACGCCGTACGTATGGCTGGGg       >  1:13202272/1‑34
        GGAATACGCACGTAACGCCGTACGTATGGCTGGGg       >  1:3906031/1‑34
        GGAATACGCACGTAACGCCGTACGTATGGCTGGGg       >  1:17720632/1‑34
        GGAATACGCACGTAACGCCGTACGTATGGCTGGGC       >  1:2392042/1‑35
         GAATACGCACGTAACGCCGTACGTATGGCTGGGgg      >  1:7525857/1‑33
          AATACGCACGTAACGCCGTACGTATGGCTGGGCtg     >  1:14382618/1‑33
           ATACGCACGTAACGCCGTACGTATGGCTGGGGGGG    >  1:17395078/1‑35
           ATACGCACGTAACGCCGTACGTATGGCTGGGGGGG    >  1:13720576/1‑35
           ATACGCACGTAACGCCGTACGTATGGCTGGGGGGG    >  1:15946502/1‑35
            TACGCACGTAACGCCGTACGTATGGCTGGGCGGGT   >  1:5911866/1‑35
             ACGCACGTAACGCCGTACGTATGGCTGGGCGGGTG  >  1:375243/1‑35
                                                
ATGTTCGTGGAATACGCACGTAACGCCGTACGTATGGCTG‑‑‑‑‑‑‑‑  <  REL606/2966081‑2966042
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGGCGGGTG  >  REL606/3780481‑3780488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.