New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1539621 =78 (0.760)11 (0.140) 5/38 NT 16.2% coding (51/2400 nt) dos cAMP phosphodiesterase, heme‑regulated
?REL606 3527786 = 52 (0.640)coding (449/1110 nt) livK leucine transporter subunit

GATGCGGAAAATGCCGCCGATGGCATTTTTTTCCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1539659‑1539621
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC  >  REL606/3527786‑3527819
                                                                         
GATGCGGAAAATGCCGCCGATGGCATTTTTTTCCC                                        >  1:9086103/1‑35
 ATGCGGAAAATGCCGCCGATGGCATTTTTTTCCCC                                       >  1:9518052/1‑35
  TGCGGAAAATGCCGCCGATGGCATTTTTTTCCCCG                                      >  1:16585281/1‑35
  TGCGGAAAATGCCGCCGATGGCATTTTTTTCCCCG                                      >  1:1625101/1‑35
    CGGAAAATGCCGCCGATGGCATTTTTTTCCCCGCC                                    >  1:5736683/1‑35
    CGGAAAATGCCGCCGATGGCATTTTTTTCCCCGCC                                    >  1:19486393/1‑35
                     aaaATTTTTTTCCCCGCCGTTGGCCCCTGGGAAGA                   <  1:9660419/32‑1
                      aaATTTTTTTCCCCGCCGTTGGCCCCTGGGAAGAG                  <  1:14027103/33‑1
                       atTTTTTTTCCCCGCCGTTGGCCCCTGGGAAGAGT                 <  1:12168449/33‑1
                        ATTTTTTTCCCCGCCGTTGGCCCCTGGGAAGAGTC                <  1:16834771/35‑1
                         tgTTTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCC               <  1:13282931/33‑1
                         tgTTTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCC               <  1:6961789/33‑1
                         TTTTTTTCCCCGCCGTTGGCCACTGGGAAGAGTCC               <  1:5902689/35‑1
                          ttaTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCCA              <  1:17159259/32‑1
                          gTTTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCCA              <  1:13309650/34‑1
                          TTTTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCCA              <  1:15140067/35‑1
                           TTTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCCAG             <  1:2207069/35‑1
                            aTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGC            <  1:5028782/34‑1
                            TTTCCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGC            <  1:2147787/35‑1
                             ttcCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCC           <  1:14228584/32‑1
                              tttCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCC          <  1:7347143/32‑1
                              tcCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCC          <  1:14740056/33‑1
                              TTCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCC          <  1:13678177/35‑1
                              TTCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCC          <  1:65846/35‑1
                              TTCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCC          <  1:15224021/35‑1
                               gCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCG         <  1:7626006/34‑1
                               TCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCG         <  1:17185309/35‑1
                                gCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGG        <  1:19832829/34‑1
                                CCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGG        <  1:7921637/35‑1
                                CCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGG        <  1:2004507/35‑1
                                CCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGG        <  1:2585763/35‑1
                                 aCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGC       <  1:2440379/34‑1
                                 CCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGC       <  1:14369371/35‑1
                                 CCCGCCGTTGGCCCCGGGGAAGAGTCCAGCCCGGC       <  1:8100455/35‑1
                                  CCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCA      >  1:13068981/1‑35
                                  CCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCA      <  1:4918719/35‑1
                                   CGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAG     >  1:3032162/1‑35
                                   CGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAG     >  1:17040026/1‑35
                                   CGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAG     <  1:16554847/35‑1
                                    GCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGT    >  1:8733168/1‑35
                                    GCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGT    <  1:9775534/35‑1
                                    GCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGT    >  1:7419321/1‑35
                                    GCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGT    >  1:18577446/1‑35
                                     CCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTA   <  1:16391587/35‑1
                                     CCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTA   >  1:13040528/1‑35
                                     CCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTA   >  1:971959/1‑35
                                      CGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC  >  1:7481846/1‑35
                                      CGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC  <  1:18951218/35‑1
                                      CGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC  <  1:9075813/35‑1
                                      CGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC  >  1:13673035/1‑35
                                      CGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC  >  1:11160578/1‑35
                                      CGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC  <  1:10221696/35‑1
                                      CGTTGGCCCCTGGGAAGAGTCCAGACCGGCAGTAC  <  1:7530472/35‑1
                                                                         
GATGCGGAAAATGCCGCCGATGGCATTTTTTTCCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1539659‑1539621
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC  >  REL606/3527786‑3527819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.