New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 734239 =59 (0.570)18 (0.180) 6/48 NT 29.0% coding (1021/1284 nt) gltA citrate synthase
?REL606 1556579 = 29 (0.280)intergenic (‑104/+298) ydeN/ydeO hypothetical protein/predicted DNA‑binding transcriptional acfivator

Only 100 of 128 total aligned reads displayed.

TACGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATAGCCACTTCCAGCAGGTCATCCTTCGTGCCCAGC  >  REL606/734205‑734273
                                  |                                  
tACGGGTCGTTCAGCGCGATGTTTTCCAGCTCCAt                                    <  1:1846297/35‑1 (MQ=255)
tACGGGTCGTTCAGCGCGATGTTTTCCAGCTCCAt                                    >  1:19727771/1‑35 (MQ=255)
tACGGGTCGTTCAGCGCGATGTTTTCCAGCTCCAt                                    >  1:9072616/1‑35 (MQ=255)
tACGGGTCGTTCAGCGCGATGTTTTCCAGCTCCAt                                    <  1:2598651/35‑1 (MQ=255)
tACGGGTCGTTCAGCGCGATGTTTTCCAGCTCCAt                                    <  1:13705600/35‑1 (MQ=255)
 actggTCGTTCAGCGCGATGTTTTCCGGCTCCATa                                   <  1:9020421/32‑1 (MQ=37)
 aCGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATa                                   >  1:18440750/1‑35 (MQ=255)
 aCGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATa                                   <  1:19140580/35‑1 (MQ=255)
 aCGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATa                                   <  1:19400914/35‑1 (MQ=255)
 aCGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATa                                   >  1:19596059/1‑35 (MQ=255)
 aCGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATa                                   >  1:17141468/1‑35 (MQ=255)
 aCGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATa                                   <  1:5937229/35‑1 (MQ=255)
 aCGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATa                                   <  1:8435889/35‑1 (MQ=255)
 aCGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATa                                   <  1:7567280/35‑1 (MQ=255)
 aCGGGTCGTTCAGCGCGATGTTTTCCAGATCCATa                                   <  1:8715271/35‑1 (MQ=255)
  cGGGTCGTTCAGCTCGATGTTTTCCAGCTCCATAg                                  >  1:14271303/1‑35 (MQ=255)
  cGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATAg                                  <  1:741367/35‑1 (MQ=255)
  cGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATAg                                  >  1:8686907/1‑35 (MQ=255)
  cGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATAg                                  >  1:8192360/1‑35 (MQ=255)
  cGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATAg                                  <  1:16860952/35‑1 (MQ=255)
   tcgTCGTTCAGCGCGATGTTTTCCAGCTCCATAGc                                 <  1:6816491/33‑1 (MQ=255)
   gggTCGTTCAGCGCGATGTTTTCCAGCTCCATAGc                                 <  1:14929348/35‑1 (MQ=255)
   gggTCGTTCAGCGCGATGTTTTCCAGCTCCATAGc                                 <  1:15377753/35‑1 (MQ=255)
    ggTCGTTCAGCGCGATGTTTTCCAGCTCCATAGcc                                <  1:3092802/35‑1 (MQ=255)
    ggTCGTTCAGCGCGATGTTTTCCAGCTACATAGcc                                <  1:7447085/35‑1 (MQ=255)
     gTCGTTCAGCGCGATGTTTTCCAGCTCCATAGCCa                               >  1:14299828/1‑35 (MQ=255)
     gTCGTTCAGCGCGATGTTTTCCAGCTCCATAGCCa                               <  1:10224998/35‑1 (MQ=255)
      tCGTTCAGCGCTATGTTTTCCAGCTCCATAGCCAc                              >  1:12482445/1‑35 (MQ=255)
       cGTTCAGCGCGATGTTTTCCAGCTCCATAGCCACt                             >  1:16582982/1‑35 (MQ=255)
       cGTTCAGCGCGATGTTTTCCAGCTCCATAGCCACt                             >  1:8791140/1‑35 (MQ=255)
       cGTTCAGCGCGATGTTTTCCAGCTCCATAGCCACt                             >  1:4577697/1‑35 (MQ=255)
        gTTCAGCGCGATGTTTTCCAGCTCCATAGCCACtt                            >  1:11455287/1‑35 (MQ=255)
         ttCAGCGCGATGTTTTCCAGCTCCATAGCCACTTc                           >  1:19341106/1‑35 (MQ=255)
         ttCAGCGCGATGTTTTCCAGCTCCATAGCCACTTc                           >  1:19727643/1‑35 (MQ=255)
         ttCAGCGCGATGTTTTCCAGCTCCATAGCCACTTc                           >  1:7134477/1‑35 (MQ=255)
         ttCAGCGCGATGTTTTCCAGCTCCATAGCCACTTc                           >  1:3846252/1‑35 (MQ=255)
         ttCAGCGCGATGTTTTCCAGCTCCATAGCCACTTc                           >  1:6470294/1‑35 (MQ=255)
          tCAGCGCGATGTTTTCCAGCTCCATAGCCACTTcc                          >  1:6916924/1‑35 (MQ=255)
          ncAGCGCGATGTTTTCCAGCTCCATAGCCACTTcc                          >  1:2715252/2‑35 (MQ=255)
           cAGCGCGATGTTTTCCAGCTCCATAGCCACTTCca                         >  1:2013478/1‑35 (MQ=255)
           cAGCGCGATGTTTTCCAGCTCCATAGCCACTTCca                         >  1:2161886/1‑35 (MQ=255)
           cAGCGCGATGTTTTCCAGCTCCATAGCCACTTCca                         >  1:9526732/1‑35 (MQ=255)
           cAGCGCGATGTTTTCCAGCTCCATAGCCACTTCca                         >  1:11915896/1‑35 (MQ=255)
            aGCGCGATGTTTTCCAGCTCCATAGCCACTTCcag                        >  1:2250635/1‑35 (MQ=255)
            aGCGCGATGTTTTCCAGCTCCATAGCCACTTCcag                        >  1:12938629/1‑35 (MQ=255)
             gcgcGATGTTTTCCAGCTCCATAGCCACTTCcagc                       >  1:7804527/1‑35 (MQ=255)
             gcgcGATGTTTTCCAGCTCCATAGCCACTTCcagc                       >  1:5092152/1‑35 (MQ=255)
              cgcgATGTTTTCCAGCTCCATAGCCACTTCcagca                      >  1:17346402/1‑35 (MQ=255)
               gcgATGTTTTCCAGCTCCATAGCCACTTCcagcag                     >  1:10220078/1‑35 (MQ=255)
               gcgATGTTTTCCAGCTCCATAGCCACTTCcagcag                     >  1:600644/1‑35 (MQ=255)
               gcgATGTTTTCCAGCTCCATAGCCACTTCcagcag                     >  1:15276699/1‑35 (MQ=255)
                cgATGTTTTCCAGCTCCATAGCCACTTCCAGCAgg                    >  1:415502/1‑35 (MQ=255)
                  ttttttccctttttttTAGCCACTTCCAGCAGGTc                  >  1:1525721‑M1/17‑35 (MQ=255)
                  aTGTTTTCCAGCTCCATAGCCACTTCCAGCAGGTc                  >  1:6956783/1‑35 (MQ=255)
                  aTGTTTTCCAGCTCCATAGCCACTTCCAGCAGGTc                  >  1:17082091/1‑35 (MQ=255)
                   tttttccctttttttTAGCCACTTCCAGCAGGTCa                 >  1:8491449‑M1/16‑35 (MQ=255)
                   tGTTTTCCAGCTCCATAGCCACTTCCAGCAGGTCa                 >  1:18859706/1‑35 (MQ=255)
                   tGTTTTCCAGCTCCATAGCCACTTCCAGCAGGTCa                 >  1:15844802/1‑35 (MQ=255)
                    ttttccctttttttTAGCCACTTCCAGCAGGTCAt                >  1:2789605‑M1/15‑35 (MQ=255)
                     tttccctttttttTAGCCACTTCCAGCAGGTCATc               >  1:740683‑M1/14‑35 (MQ=255)
                     tttccccttttttTAGCCACTTCCAGCAGGTCATc               >  1:12733759‑M1/14‑35 (MQ=255)
                      tttCCAGCTCCATAGCCACTTCCAGCAGGTCATcc              >  1:11911118/1‑35 (MQ=255)
                       ttCCAGCTCCATAGCCACTTCCAGCAGGTCATCCt             >  1:7495853/1‑35 (MQ=255)
                        tcctctttttTAGCCACTTCCAGCAGGTCATCCtt            >  1:912370‑M1/11‑35 (MQ=255)
                        tCCAGCTCCATAGCCACTTCCAGCAGGTCATCCtt            >  1:17270955/1‑35 (MQ=255)
                        ccccttttttTAGCCACTTCCAGCAGGTCATCCtt            >  1:18182106‑M1/11‑35 (MQ=255)
                          ttttttttTAGCCACTTCCAGCAGGTCATCCTTCg          >  1:9095395‑M1/9‑35 (MQ=255)
                          ctttttttTAGCCACTTCCAGCAGGTCATCCTTCg          >  1:17533132‑M1/9‑35 (MQ=255)
                          cAGCTCCATAGCCACTTCTAGCAGGTCATCCTTCg          >  1:5195012/1‑35 (MQ=255)
                          cAGCTCCATAGCCACTTCCAGCAGGTCATCCTTCg          >  1:11814012/1‑35 (MQ=255)
                          cAGCTCCATAGCCACTTCCAGCAGGTCATCCTTCg          >  1:2897340/1‑35 (MQ=255)
                          cAGCTCCATAGCCACTTCCAGCAGGTCATCCTTCg          >  1:18199092/1‑35 (MQ=255)
                           tttttttTAGCCACTTCCAGCAGGTCATCCTTCGt         >  1:6120905‑M1/8‑35 (MQ=255)
                           accTCCATATCCACTTCCAGCAGGTCATCCTTCGt         <  1:19232917/33‑1 (MQ=25)
                           aGCTCCATAGCCACTTCCAGCAGGTCATCCTTCGt         >  1:13707501/1‑35 (MQ=255)
                            ttttttTAGCCACTTCCAGCAGGTCATCCTTCGTg        >  1:5806688‑M1/7‑35 (MQ=255)
                            ttttttTAGCCACTTCCAGCAGGTCATCCTTCGTg        >  1:16940476‑M1/7‑35 (MQ=255)
                            tcttttTAGCCACTTCCAGCAGGTCATCCTTCGTg        >  1:11515633‑M1/7‑35 (MQ=255)
                            gCTCCATAGCCACTTCCAGCAGGTCATCCTTCGtt        >  1:3368503/1‑34 (MQ=255)
                            gCTCCATAGCCACTTCCAGCAGGTCATCCTTCGTg        >  1:6210456/1‑35 (MQ=255)
                             tttttTAGCCACTTCCAGCAGGTCATCCTTCGTGc       >  1:256071‑M1/6‑35 (MQ=255)
                             cTCCATAGCCACTTCCAGCAGGTCATCCTTCGTGc       >  1:1337126/1‑35 (MQ=255)
                              ttttTAGCCACTTCCAGCAGGTCATCCTTCGTGcc      >  1:7722065‑M1/5‑35 (MQ=255)
                              tCCATAGCCACTTCCAGCAGGTCATCCTTCGTGcc      >  1:10486587/1‑35 (MQ=255)
                              tCCATAGCCACTTCCAGCAGGTCATCCTTCGTGcc      >  1:3686282/1‑35 (MQ=255)
                               tttTAGCCACTTCCAGCAGGTCATCCTTCGTGccc     >  1:14204160‑M1/4‑35 (MQ=255)
                                ttTAGCCACTTCCAGCAGGTCATCCTTCGTGCCCa    >  1:3419595‑M1/3‑35 (MQ=255)
                                ttTAGCCACTTCCAGCAGGTCATCCTTCGTGCCCa    >  1:12812535‑M1/3‑35 (MQ=255)
                                ttTAGCCACTTCCAGCAGGTCATCCTTCGTGCCCa    >  1:5725825‑M1/3‑35 (MQ=255)
                                ttTAGCCACTTCCAGCAGGTCATCCTTCGTGCCCa    >  1:16176944‑M1/3‑35 (MQ=255)
                                cATAGCCACTTCCAGCAGGTCATCCTTCGTGCCCa    >  1:10102192/1‑35 (MQ=255)
                                 tTAGCCACTTCCAGCAGGTCATCCTTTGTGCCCAg   >  1:19130757‑M1/2‑35 (MQ=255)
                                 tTAGCCACTTCCAGCAGGTCATCCTTCGTGCCCAg   >  1:4851503‑M1/2‑35 (MQ=255)
                                 tTAGCCACTTCCAGCAGGTCATCCTTCGTGCCCAg   >  1:9766914‑M1/2‑35 (MQ=255)
                                 aTAGCCACTTCCAGCAGGTCATCCTTCGTGCCCAg   >  1:11310361/1‑35 (MQ=255)
                                  tAGCCACTTCCAGCAGGTCATCCTTCGTGCCCAGc  >  1:8201469/1‑35 (MQ=255)
                                  tAGCCACTTCCAGCAGGTCATCCTTCGTGCCCAGc  <  1:2717557/35‑1 (MQ=255)
                                  tAGCCACTTCCAGCAGGTCATCCTTCGTGCCCAGc  >  1:16391385/1‑35 (MQ=255)
                                  tAGCCACTTCCAGCAGGTCATCCTTCGTGCCCAGc  >  1:11335391/1‑35 (MQ=255)
                                  tAGCCACTTCCAGCAGGTCATCCTTCGTGCCCAGc  >  1:9710373/1‑35 (MQ=255)
                                  |                                  
TACGGGTCGTTCAGCGCGATGTTTTCCAGCTCCATAGCCACTTCCAGCAGGTCATCCTTCGTGCCCAGC  >  REL606/734205‑734273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.