New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3040639 | 97 (0.940) | 17 (0.220) | 5/36 | NT | 21.2% | coding (648/810 nt) | pppA | bifunctional prepilin leader peptidase/ methylase |
? | REL606 | 3224905 = | 54 (0.700) | coding (858/2517 nt) | yraJ | predicted outer membrane protein |
TAAAGCAACGTTGGGCAGTGATAACGCCCCCACCCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3040600‑3040639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA > REL606/3224905‑3224938 TAAAGCAACGTTGGGCAGTGATAACGCCCCCACCC > 1:3109155/1‑35 AAAGCAACGTTGGGCAGTTATAACGCCCCCACCCA > 1:9521007/1‑35 AAAGCAACGTTGGGCAGTGATAACGCCCCCACCCA < 1:5715752/35‑1 AAAGCAACGTTGGGCAGTGATAACGCCCCCACCCA > 1:13757249/1‑35 AAGCAACGTTGGGCAGTGATAACGCCCCCACCCAG > 1:6497818/1‑35 AAGCAACGTTGGGCAGTGATAACGCCCCCACCCAG < 1:17517174/35‑1 AGCAACGTTGGGCAGTGATAACGCCCCCACCCAGC > 1:10187558/1‑35 AGCAACGTTGGGCAGTGATAACGCCCCCACCCAGC < 1:8659895/35‑1 AGCAACGTGGGGCAGTGATAACGCCCCCACCCAGC < 1:14588107/35‑1 GCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC < 1:3066035/35‑1 GCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC > 1:16538447/1‑35 GCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC < 1:15549434/35‑1 GCAACGTTGGGCAGTGATAACGCCCCCACCCAGCC > 1:9701342/1‑35 CAACGTTGGGCAGTGATAACGCCCCCCCCCAGCCA < 1:8314193/35‑1 CAACGTTGGGCAGTGATAACGCCCCCACCCAGCCA > 1:37542/1‑35 accCCCCCACCCAGCCAGCGCGGATTTGCCCCAAC < 1:14210319/32‑1 ACGCCCCCAACCAGCCAGCGCGGATTTGCCCCAAC < 1:13334631/35‑1 ccCCCCCACCCAGCCAGCGCGGATTTGCCCCAACG < 1:19648944/33‑1 gcaCCCACCCAGCCAGCGCGGATTTGCCCCAACGG < 1:12857338/32‑1 cCCCCCACCCAGCCAGCGCGGATTTGCCCCAACGG < 1:9301780/34‑1 cCCCCCACCCAGCCAGCGCGGATTTGCCCCAACGG < 1:3703897/34‑1 cCCCCCACCCAGCCAGCGCGGATTTGCCCCAACGG < 1:17683028/34‑1 GCCCCCACCCAGCCAGCGCGGATTTGCCCCAACGG < 1:10627634/35‑1 GCCCCCACCCAGCCAGCGCGGATTTGCCCCAACGG < 1:5717603/35‑1 GCCCCCACCCAGCCAGCGCGGATTTGCCCCAACGG < 1:17460161/35‑1 CCCCCACCCAGCCAGCGCGGATTTGCCCCAACGGT < 1:19894792/35‑1 CCCCCACCCAGCCAGCGCGGATTTGCCCCAACGGT < 1:1692492/35‑1 CCCCCCCCAGCCAGCGCGGATTTGCCCCAACGGTA < 1:4383169/35‑1 CCCCACCCAGCCAGCGCGGATTTGCCCCAACGGTA < 1:5633891/35‑1 CCCCACCCAGCCAGCGCGGATTTGCCCCAACGGTA < 1:17235531/35‑1 CCCACCCAGCCAGCGCGGATTTGCCCCAACGGTAC < 1:4475286/35‑1 CCCACCCAGCCAGCGCGGATTTGCCCCAACGGTAC < 1:2481547/35‑1 cccCCCAGCCAGCGCGGATTTGCCCCAACGGTACG < 1:579143/32‑1 caACCCAGCCAGCGCGGATTTGCCCCAACGGTACa < 1:550927/33‑2 ACCCAGCCAGCGCGGATTTGCCCCAACGGTACGCG < 1:19264190/35‑1 ACCCAGCCAGCGCGGATTTGCCCCAACGGTACGCG < 1:5540549/35‑1 aCCAGCCAGCGGGGATTTGCCCCAACGGTACGCGG < 1:7532043/34‑1 aCCAGCCAGCGCGGATTTGCCCCAACGGTACGCGG < 1:3805004/34‑1 CCCAGCCAGCGCGGATTTGCCCCAACGGTACGCGG < 1:17943456/35‑1 CCCAGCCAGCGCGGATTTGCCCCAACGGTACGCGG < 1:17896658/35‑1 CCCAGCCAGCGCGGATTTGCCCCAACGGTACGCGG < 1:7806011/35‑1 CCCAGCCAGCGCGGATTTGCCCCAACGGTACGCGG < 1:3207811/35‑1 CCCAGCCAGCGCGGATTTGCCCCAACGGTACGCGG < 1:16312711/35‑1 CCAGCCAGCGCGGATTTGCCCCAACGGTACGCGGT < 1:19870804/35‑1 CCAGCCAGCGCGGATTTGCCCCAACGGTACGCGGT < 1:1487574/35‑1 CAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTA < 1:6066684/35‑1 CAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTA > 1:8056085/1‑35 CAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTA < 1:8097431/35‑1 AGCCAGCGCGGATTTGCCCCAACGGTACGCGGTAT > 1:5659997/1‑35 AGCCAGCGCGGATTTGCCCCAACGGTACGCGGTAT > 1:18638649/1‑35 AGCCAGCGCGGATTTGCCCCAACGGTACGCGGTAT > 1:18040797/1‑35 AGCCAGCGCGGATTTGCCCCAACGGTACGCGGTAT > 1:12301898/1‑35 AGCCAGCGCGGATTTGCCCCAACGGTACGCGGTAT > 1:9402942/1‑35 GCCAGCGCGGATTTGCCCCAACGGTACGCGGTATa > 1:10946309/1‑34 GCCAGCGCGGATTTGCCCCAACGGTACGCGGTATC > 1:5386961/1‑35 GCCAGCGCGGATTTGCCCCAACGGTACGCGGTATC < 1:11902399/35‑1 GCCAGCGCGGATTTGCCCCAACGGTACGCGGTATC < 1:16169703/35‑1 GCCAGCGCGGATTTGCCCCAACGGTACGCGGTATC < 1:15449437/35‑1 CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG < 1:8208414/35‑1 CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG > 1:4965622/1‑35 CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG < 1:3055189/35‑1 CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG < 1:2370892/35‑1 CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG < 1:13344123/35‑1 CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG < 1:11657809/35‑1 CCAGCGCGGATTTGCCCCAACGGTACGCGGTATCG < 1:10100476/35‑1 CAGCGCGTATTTGCCCCAACGGTACGCGGTATCGC > 1:465975/1‑35 CAGCGCGGATTTGCCCCAACGGTACGCGGTATCGC > 1:6660442/1‑35 CAGCGCGGATTTGCCCCAACGGTACGCGGTATCGC < 1:17684607/35‑1 CAGCGCGGATTTGCCCCAACGGTACGCGGTATCGC > 1:864839/1‑35 CAGCGCGGATTTGCCCCAACGGTACGCGGTATCGC > 1:12814112/1‑35 AGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA > 1:6168022/1‑35 AGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA > 1:8080059/1‑35 AGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA > 1:17669725/1‑35 AGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA < 1:8806902/35‑1 AGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA > 1:9875042/1‑35 TAAAGCAACGTTGGGCAGTGATAACGCCCCCACCCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3040600‑3040639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccaGCGCGGATTTGCCCCAACGGTACGCGGTATCGCA > REL606/3224905‑3224938 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |