New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 564054 =42 (0.410)9 (0.120) 3/34 NT 14.5% coding (2252/2973 nt) nfrA bacteriophage N4 receptor, outer membrane subunit
?REL606 1414711 = 76 (1.040)coding (223/276 nt) racC predicted protein

Only 100 of 125 total aligned reads displayed.

ATTATTGTTAGCGGTGCTCATTGCCCCGGAACGCAAGCCGATAGAAGAATCGAAACTGAACGTCCAGCG  >  REL606/564020‑564088
                                  |                                  
gtgcatatcggaaagaatctgcccgcagaaaaaaa                                    <  1:1552041‑M1/1‑1 (MQ=255)
gtgcatatcggaaagaatctgcccgcagaaaaaaa                                    >  1:6162695‑M1/35‑35 (MQ=255)
gtgcatatcggaaagaatctgcccgcagaaaaaaa                                    >  1:8751531‑M1/35‑35 (MQ=255)
attattGTTAGCGGTGCTCATTGCCCCGGAACGCa                                    >  1:19684089/1‑35 (MQ=255)
attattGTTAGCGGTGCTCATTGCCCCGGAACGCa                                    <  1:3081768/35‑1 (MQ=255)
attattGTTAGCGGTGCTCATTGCCCCGGAACGCa                                    >  1:17600755/1‑35 (MQ=255)
attattGTTAGCGGTGCTCATTGCCCCGGAACGCa                                    <  1:12859805/35‑1 (MQ=255)
attattGTTAGCGGTGCTCATTGCCCCGGAACGCa                                    >  1:786673/1‑35 (MQ=255)
attattGTTAGCGGTGCTCATTGCCCCGGAACGCa                                    <  1:7970353/35‑1 (MQ=255)
attattGTTAGCGGTGCTCATTGCCCCGGAACGCa                                    >  1:9787062/1‑35 (MQ=255)
attattGTTAGCGGTGCTCATTGCCCCGGAACGCa                                    <  1:9321146/35‑1 (MQ=255)
 ttgttGTTAGCGGTGCTCATTGCCCAGGAACGCaa                                   <  1:7769513/32‑1 (MQ=37)
 ttattGTTAGCGGTGCTCATTGCCCCGGAACGCaa                                   <  1:13621628/35‑1 (MQ=255)
 ttattGTTAGCGGTGCTCATTGCCCCGGAACGCaa                                   <  1:8702735/35‑1 (MQ=255)
 tgcatatcggaaagaatctgcccgcagaaaaaaaa                                   >  1:2553187‑M1/34‑35 (MQ=255)
 tgcatatcggaaagaatctgcccgcagaaaaaaaa                                   <  1:1483133‑M1/2‑1 (MQ=255)
 tgcatatcggaaagaatctgcccgcagaaaaaaaa                                   <  1:13407954‑M1/2‑1 (MQ=255)
  tattGTTAGCGGTGCTCATTGCCCCGGAACGCAAg                                  <  1:12548077/35‑1 (MQ=255)
  tattGTTAGCGGTGCTCATTGCCCCGGAACGCAAg                                  <  1:6218427/35‑1 (MQ=255)
  tattGTTAGCGGTGCTCATTGCCCCGGAACGCAAg                                  <  1:6682457/35‑1 (MQ=255)
  gcatatcggaaagaatctgcccgcagaaaaaaAAg                                  <  1:17174908‑M1/3‑1 (MQ=255)
   catatcggaaagaatctgcccgcagaaaaaaAAGc                                 >  1:9563760‑M1/32‑35 (MQ=255)
   catatcggaaagaatctgcccgcagaaaaaaAAGc                                 <  1:14587746‑M1/4‑1 (MQ=255)
   catatcggaaagaatctgcccgcagaaaaaaAAGc                                 <  1:14622907‑M1/4‑1 (MQ=255)
   catatcggaaagaatctgcccgcagaaaaaaAAGc                                 <  1:1921095‑M1/4‑1 (MQ=255)
   attGTTAGCGGTGCTCATTGCCCCGGAACGCAAGc                                 >  1:17315806/1‑35 (MQ=255)
   attGTTAGCGGTGCTCATTGCCCCGGAACGCAAGc                                 <  1:11148061/35‑1 (MQ=255)
    atatcggaaagaatctgcccgcagaaaaaaAAGcc                                <  1:14981562‑M1/5‑1 (MQ=255)
    atatcggaaagaatctgcccgcagaaaaaaAAGcc                                <  1:15067213‑M1/5‑1 (MQ=255)
    atatcggaaagaatctgcccgcagaaaaaaAAGcc                                >  1:12231957‑M1/31‑35 (MQ=255)
    atatcggaaagaatctgcccgcagaaaaaaAAGcc                                <  1:3321828‑M1/5‑1 (MQ=255)
    atatcggaaagaatctgcccgcagaaaaaaAAGcc                                >  1:15500899‑M1/31‑35 (MQ=255)
    atatcggaaagaatctgcccgcagaaaaaaAAGcc                                <  1:5938333‑M1/5‑1 (MQ=255)
     tatcggaaagaatctgcccgcagaaaaaaAAGCCg                               <  1:19219089‑M1/6‑1 (MQ=255)
     tatcggaaagaatctgcccgcagaaaaaaAAGCCg                               <  1:18467498‑M1/6‑1 (MQ=255)
     tGTTAGCGGTGCTCATTGCCCCGGAACGCAAGCCg                               >  1:15227225/1‑35 (MQ=255)
      gtaaGCGGTGCTCATTGCCCCGGAACGCAAGCCGa                              >  1:18837675/4‑35 (MQ=255)
      gTTAGCGGTGCTCATTGCCCCGGAACGCAAGCCGa                              >  1:9592006/1‑35 (MQ=255)
      atcggaaagaatctgcccgcagaaaaaaAAGCCGa                              <  1:17330639‑M1/7‑1 (MQ=255)
      atcggaaagaatctgcccgcagaaaaaaAAGCCGa                              <  1:7347305‑M1/7‑1 (MQ=255)
      atcggaaagaatctgcccgcagaaaaaaAAGCCGa                              <  1:11884066‑M1/7‑1 (MQ=255)
       ttAGCGGTGCTCATTGCCCCGGAACGCAAGCCGAt                             >  1:8667833/1‑35 (MQ=255)
            ggTGCTCATTGCCCCGGAACGCAAGCCGATagaag                        >  1:5212229/1‑35 (MQ=255)
            ggTGCTCATTGCCCCGGAACGCAAGCCGATagaag                        >  1:12759948/1‑35 (MQ=255)
               gCTCATTGCCCCGGAACGCAAGCCGATAGAAGAAt                     >  1:5827037/1‑35 (MQ=255)
               gCTCATTGCCCCGGAACGCAAGCCGATAGAAGAAt                     >  1:3207205/1‑35 (MQ=255)
                cTCATTGCCCCGGAACGCAAGCCGATAGAAGAATc                    >  1:7278964/1‑35 (MQ=255)
                 tCATTGCCCCGGAACGCAAGCCGATAGAAGAATCg                   >  1:20138133/1‑35 (MQ=255)
                  cATTGCCCCGGAACGCAAGCCGATAGAAGAATCGa                  >  1:15308256/1‑35 (MQ=255)
                  cATTGCCCCGGAACGCAAGCCGATAGAAGAATCGa                  >  1:12817515/1‑35 (MQ=255)
                  cATTGCCCCGGAACGCAAGCCGATAGAAGAATCGa                  >  1:8043910/1‑35 (MQ=255)
                   aTTGCCCCGGAACGCAAGCCGATAGAAGAATCGaa                 >  1:4166987/1‑35 (MQ=255)
                    ttGCCCCGGAACGCAAGCCGATAGAAGAATCGaaa                >  1:4013620/1‑35 (MQ=255)
                    ttGCCCCGGAACGCAAGCCGATAGAAGAATCGaaa                >  1:10093461/1‑35 (MQ=255)
                    ttGCCCCGGAACGCAAGCCGATAGAAGAATCGaaa                >  1:12181032/1‑35 (MQ=255)
                      gCCCCGGAACGCAAGCCGATAGAAGAATCGAAACt              >  1:10202886/1‑35 (MQ=255)
                      gCCCCGGAACGCAAGCCGATAGAAGAATCGAAACt              >  1:720944/1‑35 (MQ=255)
                      gCCCCGGAACGCAAGCCGATAGAAGAATCGAAACt              >  1:387615/1‑35 (MQ=255)
                      gCCCCGGAACGCAAGCCGATAGAAGAATCGAAACt              >  1:3859582/1‑35 (MQ=255)
                      gCCCCGGAACGCAAGCCGATAGAAGAATCGAAACt              >  1:11224734/1‑35 (MQ=255)
                      cccccGGAAAAAAAGCCGATAGAAGAATCGAAACt              <  1:192636/34‑1 (MQ=25)
                       ccccGGAACGCAAGCCGATAGAAGAATCGAAACTg             >  1:13034537/1‑35 (MQ=255)
                       ccccGGAACGCAAGCCGATAGAAGAATCGAAACTg             >  1:9499426/1‑35 (MQ=255)
                       ccccGAAACAAAAGCCGATAGAAGAATCGAAACTg             <  1:18096484/35‑1 (MQ=25)
                        cccGGAACGCAAGCCGATAGAAGAATCGAAACTGa            >  1:9451351/1‑35 (MQ=255)
                        cccGGAACGCAAGCCGATAGAAGAATCGAAACTGa            >  1:16342088/1‑35 (MQ=255)
                        cccGGAACGCAAGCCGATAGAAGAATCGAAACTGa            >  1:633683/1‑35 (MQ=255)
                        cccGGAACGCAAGCCGATAGAAGAATCGAAACTGa            >  1:15504756/1‑35 (MQ=255)
                        ccaaaaaaaaAAGCCGATAGAAGAATCGAAACTGa            >  1:2650312‑M1/11‑35 (MQ=255)
                         ccGGAACGCAAGCCGATAGAAGAATCGAAACTGaa           >  1:11901089/1‑35 (MQ=255)
                         ccGGAACGCAAGCCGATAGAAGAATCGAAACTGaa           >  1:7654200/1‑35 (MQ=255)
                         ccGGAACGCAAGCCGATAGAAGAATCGAAACTGaa           >  1:11177365/1‑35 (MQ=255)
                         ccGGAACGCAAGCCGATAGAAGAATCGAAACTGaa           >  1:3721380/1‑35 (MQ=255)
                         ccGGAACGCAAGCCGATAGAAGAATCGAAACTGaa           >  1:18550951/1‑35 (MQ=255)
                          cGGAACGCAAGCCGATAGAAGAATCGAAACTGAAc          >  1:4189261/1‑35 (MQ=255)
                          cGGAACGCAAGCCGATAGAAGAATCGAAACTGAAc          >  1:6961121/1‑35 (MQ=255)
                          cGGAACGCAAGCCGATAGAAGAATCGAAACTGAAc          >  1:11376784/1‑35 (MQ=255)
                          cGGAACGCAAGCCGATAGAAGAATCGAAACTGAAc          >  1:8382990/1‑35 (MQ=255)
                           ggAACGCAAGCCGATAGAAGAATCGAAACTGAACg         >  1:5534117/1‑35 (MQ=255)
                           gaaacaaAAGCCGATAGAAGAATCGAAACTGAACg         >  1:6177852‑M1/8‑35 (MQ=255)
                           gaaacaaAAGCCGATAGAAGAATCGAAACTGAACg         >  1:11993559‑M1/8‑35 (MQ=255)
                            gaacaaAAGCCGATAGAAGAATCGAAACTGAACGt        >  1:10466231‑M1/7‑35 (MQ=255)
                            aaacaaAAGCCGATAGAAGAATCGAAACTGAACGt        >  1:11615009‑M1/7‑35 (MQ=255)
                            aaaaaaAAGCCGATAGAAGAATCGAAACTGAACGt        >  1:6719512‑M1/7‑35 (MQ=255)
                             aaaaaAAGCCGATAGAAGAATCGAAACTGAACGTc       >  1:6734249‑M1/6‑35 (MQ=255)
                              aaaaAAGCCGATAGAAGAATCGAAACTGAACGTcc      >  1:15757594‑M1/5‑35 (MQ=255)
                              aCGCAAGCCGATAGAAGAATCGAAACTGAACGTcc      >  1:4116149/1‑35 (MQ=255)
                               cGCAAGCCGATAGAAGAATCGAAACTGAACGTCCa     >  1:16867487/1‑35 (MQ=255)
                               cGCAAGCCGATAGAAGAATCGAAACTGAACGTCCa     >  1:10769150/1‑35 (MQ=255)
                               cGCAAGCCGATAGAAGAATCGAAACTGAACGTCCa     >  1:16559999/1‑35 (MQ=255)
                                gCAAGCCGATAGAAGAATCGAAACTGAACGTCCAg    >  1:9595020/1‑35 (MQ=255)
                                gCAAGCCGATAGAAGAATCGAAACTGAACGTCCAg    >  1:20168190/1‑35 (MQ=255)
                                aaAAGCCGATAGAAGAATCGAAACTGAACGTCCAg    >  1:924259‑M1/3‑35 (MQ=255)
                                aaAAGCCGATAGAAGAATCGAAACTGAACGTCCAg    >  1:13329512‑M1/3‑35 (MQ=255)
                                aaAAGCCGATAGAAGAATCGAAACTGAACGTCCAg    >  1:14790910‑M1/3‑35 (MQ=255)
                                aaAAGCCGATAGAAGAATCGAAACTGAACGTCCAg    >  1:4632149‑M1/3‑35 (MQ=255)
                                aaAAGCCGATAGAAGAATCGAAACTGAACGTCCAg    >  1:19596845‑M1/3‑35 (MQ=255)
                                  AAGCCGATAGAAGAATCGAAACTGAACGTCCAgcg  <  1:12635491‑M1/35‑1 (MQ=255)
                                  AAGCCGATAGAAGAATCGAAACTGAACGTCCAgcg  >  1:13725278‑M1/1‑35 (MQ=255)
                                  AAGCCGATAGAAGAATCGAAACTGAACGTCCAgcg  <  1:1861200‑M1/35‑1 (MQ=255)
                                  |                                  
ATTATTGTTAGCGGTGCTCATTGCCCCGGAACGCAAGCCGATAGAAGAATCGAAACTGAACGTCCAGCG  >  REL606/564020‑564088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.