New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2556110 =67 (0.650)14 (0.170) 5/38 NT 14.7% coding (1060/1371 nt) xseA exodeoxyribonuclease VII large subunit
?REL606 3882315 = 110 (1.350)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

Only 100 of 126 total aligned reads displayed.

GCGGTTAACACAGCGGCTGAATCAGCAAAATCCACAGCCGAAGATTCATCGCGCGCAAACGCGCATTCA  >  REL606/2556076‑2556144
                                  |                                  
gcGGTTAACCCAGCGGCTGAATCAGCAAAATCcac                                    <  1:19631601/35‑1 (MQ=255)
 cGGTTAACCCAGCGGCTGAATCAGCAAAATCcaca                                   <  1:13296677/35‑1 (MQ=255)
 cGGTTAACACAGCGGCTGGATCAGCAAAAACcaca                                   >  1:4731915/1‑35 (MQ=25)
 cGGTTAACACAGCGGCTGAATCAGCAAAATCcaca                                   >  1:3740146/1‑35 (MQ=255)
 cGGTTAACACAGCGGCTGAATCAGCAAAATCcaca                                   >  1:412969/1‑35 (MQ=255)
  ggTTAACCCAGCGGCTGAATCAGCAAAATCCACAg                                  <  1:6922713/35‑1 (MQ=255)
  ggTCAACCCAGCGGCTGAATCAGCAAAATCCACAg                                  <  1:14139591/35‑1 (MQ=37)
   gTTAACACAGCGGCTGAATCAGCAAAATCCACAGc                                 >  1:6277156/1‑35 (MQ=255)
   gTTAACACAGCGGCTGAATCAGCAAAATCCACAGc                                 >  1:13471686/1‑35 (MQ=255)
    ttAACACAGCGGCTGAATCAGCAAAATCCACAGcc                                >  1:9667868/1‑35 (MQ=255)
     tAACACAGCGGCTGAATCAGCAAAATCCACAGCCg                               >  1:2759442/1‑35 (MQ=255)
       ccccaGCGGCTGAATCAGCAAAATCCACACCAGaa                             <  1:14712269/32‑1 (MQ=25)
       acacAGCGGCTGAATCAGCAAAATCCACAGCCGaa                             >  1:7714907/1‑35 (MQ=255)
       acacAGCGGCTGAATCAGCAAAATCCACAGCCGaa                             >  1:17920002/1‑35 (MQ=255)
       acacAGCGGCTGAATCAGCAAAATCCACAGCCGaa                             >  1:15745423/1‑35 (MQ=255)
        cacaGCGGCTTAATCAGCAAAATCCACAGCCGAAg                            >  1:17567305/1‑35 (MQ=255)
         acaGCGGCTTAATCAGCAAAATCCACAGCCGAAGa                           >  1:10786429/1‑35 (MQ=255)
             cGGCTGAATCAGCAAAATCCACAGCCGAAGATTCa                       >  1:12768780/1‑35 (MQ=255)
              ggCTGAATCAGCAAAATCCACAGCCGAAGATTCAt                      >  1:15058719/1‑35 (MQ=255)
               gCTGAATCAGCAAAATCCACAGCCGAAGATTCATc                     >  1:453267/1‑35 (MQ=255)
               gCTGAATCAGCAAAATCCACAGCCGAAGATTCATc                     >  1:15332852/1‑35 (MQ=255)
               gCTGAATCAGCAAAATCCACAGCCGAAGATTCATc                     >  1:8400530/1‑35 (MQ=255)
               gCTGAATCAGCAAAATCCACAGCCGAAGATTCATc                     >  1:3113148/1‑35 (MQ=255)
                cTGAATCAGCAAAATCCACAGCCGAAGATTCATcg                    >  1:6495921/1‑35 (MQ=255)
                cTGAATCAGCAAAATCCACAGCCGAAGATTCATcg                    >  1:13380713/1‑35 (MQ=255)
                 tGAATCAGCAAAATCCACAGCCGAAGATTCATcgc                   >  1:448817/1‑35 (MQ=255)
                 tGAATCAGCAAAATCCACAGCCGAAGATTCATcgc                   >  1:16014782/1‑35 (MQ=255)
                 tGAATCAGCAAAATCCACAGCCGAAGATTCATcgc                   >  1:7495189/1‑35 (MQ=255)
                 tGAATCAGCAAAATCCACAGCCGAAGATTCATcgc                   >  1:7748535/1‑35 (MQ=255)
                 tGAATCAGCAAAATCCACAGCCGAAGATTCATcgc                   >  1:14168081/1‑35 (MQ=255)
                 tGAATCAGCAAAATCCACAGCCGAAGATTCATcgc                   >  1:8378814/1‑35 (MQ=255)
                 tGAATCAGCAAAATCCACAGCAGAAGATTCATcgc                   <  1:20571087/35‑1 (MQ=255)
                  gAATCAGCAAAATCCACAGCCGAAGATTCATcgcg                  >  1:16865599/1‑35 (MQ=255)
                  gAATCAGCAAAATCCACAGCCGAAGATTCATcgcg                  >  1:7727302/1‑35 (MQ=255)
                   aaTCATCAAAATCCACAGCCGAAGATTCATcgcgc                 >  1:1741142/1‑35 (MQ=255)
                   aaTCAGCAAAATCCACAGCCGAAGATTCATcgcgc                 >  1:17282225/1‑35 (MQ=255)
                   aaTCAGCAAAATCCACAGCCGAAGATTCATcgcgc                 >  1:1126267/1‑35 (MQ=255)
                   aaTCAGCAAAATCCACAGCCGAAGATTCATcgcgc                 >  1:3027974/1‑35 (MQ=255)
                    aTCAGCAAAATCCACAGCCGAAGATTCATcgcgcg                >  1:4465078/1‑35 (MQ=255)
                    aTCAGCAAAATCCACAGCCGAAGATTCATcgcgcg                >  1:14524976/1‑35 (MQ=255)
                     tCAGCAAAATCCACAGCCGAAGATTCATCgcgcgc               >  1:9529711/1‑35 (MQ=255)
                     tCAGCAAAATCCACAGCCGAAGATTCATCgcgcgc               >  1:7238969/1‑35 (MQ=255)
                     tCAGCAAAATCCACAGCCGAAGATTCATCgcgcgc               >  1:2030862/1‑35 (MQ=255)
                     acaaaaaacccccCAGCCGAAGATTCATCgcgcgc               >  1:17362586‑M1/14‑35 (MQ=255)
                      cAGCAAAATCCACAGCCGAAGATTCATCGCGCGCa              >  1:3711534/1‑35 (MQ=255)
                      agcaaaacccccCAGCCGAAGATTCATCGCGCGCa              >  1:13651604‑M1/13‑35 (MQ=255)
                       acaaaacccccCAGCCGAAGATTCATCGCGCGCaa             >  1:10147043‑M1/12‑35 (MQ=255)
                       aaaaaacccccCAGCCGAAGATTCATCGCGCGCaa             >  1:5852907‑M1/12‑35 (MQ=255)
                       aGCAACATCCACAGCCGAAGATTCATCGCGCGCaa             >  1:8937535/1‑35 (MQ=255)
                       aGCAAAATCCACAGCCGAAGATTCATCGCGCGCaa             >  1:20517383/1‑35 (MQ=255)
                       aGCAAAATCCACAGCCGAAGATTCATCGCGCGCaa             >  1:3010283/1‑35 (MQ=255)
                       aGCAAAATCCACAGCCGAAGATTCATCGCGCGCaa             >  1:1042504/1‑35 (MQ=255)
                       aGCAAAATCCACAGCCGAAGATTCATCGCGCGCaa             >  1:8321504/1‑35 (MQ=255)
                       aGCAAAATCCACAGCCGAAGATTCATCGCGCGCaa             >  1:12458786/1‑35 (MQ=255)
                       aGCAAAATCCACAGCCGAAGATTCATCGCGCGCaa             >  1:4202852/1‑35 (MQ=255)
                        caaaacccccCAGCCGAAGATTCATCGCGCGCaaa            >  1:9339605‑M1/11‑35 (MQ=255)
                        acaaacccccCAGCCGAAGATTCATCGCGCGCaaa            >  1:19018073‑M1/11‑35 (MQ=255)
                        aaaaccccccCAGCCGAAGATTCATCGCGCGCaaa            >  1:3633733‑M1/11‑35 (MQ=255)
                         cAAAATCCACAGCCGAAGATTCATCGCGCGCAAAc           >  1:1604550/1‑35 (MQ=255)
                         aaaccccccCAGCCGAAGATTCATCGCGCGCAAAc           >  1:14820217‑M1/10‑35 (MQ=255)
                         aaaacccccCAGCCGAAGATTCATCGCGCGCAAAc           >  1:15434364‑M1/10‑35 (MQ=255)
                         aaaaaccccCAGCCGAAGATTCATCGCGCGCAAAc           >  1:584004‑M1/10‑35 (MQ=255)
                          aaaaTCCACAGCCGAAGATTCATCGCGCGCAAAcg          >  1:6755213/1‑35 (MQ=255)
                          aaaaTCCACAGCCGAAGATTCATCGCGCGCAAAcg          >  1:5840756/1‑35 (MQ=255)
                          aaaaTCCACAGCCGAAGATTCATCGCGCGCAAAcg          >  1:12469719/1‑35 (MQ=255)
                          aaaaTCCACAGCCGAAGATTCATCGCGCGCAAAcg          >  1:8985677/1‑35 (MQ=255)
                          aaaaTCCACAGCCGAAGATTCATCGCGCGCAAAcg          >  1:10216266/1‑35 (MQ=255)
                           accccccCAGCCGAAGATTCATCGCGCGCAAAcgc         >  1:4000037‑M1/8‑35 (MQ=255)
                           aacccccCAGCCGAAGATTCATCGCGCGCAAAcgc         >  1:14969844‑M1/8‑35 (MQ=255)
                           aacccccCAGCCGAAGATTCATCACGCGCAAAcgc         >  1:19934631‑M1/8‑35 (MQ=255)
                           aaaTCCACAGCCGAAGATTCATCGCGCGCAAAcgc         >  1:3577047/1‑35 (MQ=255)
                           aaaTCCACAGCCGAAGATTCATCGCGCGCAAAcgc         >  1:15689253/1‑35 (MQ=255)
                            aaTCCACAGCCGAAGATTCATCGCTCGCAAAcgcg        >  1:19251615/1‑35 (MQ=255)
                            aaTCCACAGCCGAAGATTCATCGCGCGCAAAcgcg        >  1:11654329/1‑35 (MQ=255)
                            aaTCCACAGCCGAAGATTCATCGCGCGCAAAcgcg        >  1:4295546/1‑35 (MQ=255)
                            aaTCCACAGCCGAAGATTCATCGCGCGCAAAcgcg        >  1:4131462/1‑35 (MQ=255)
                            aaTCCACAGCCGAAGATTCATCGCGCGCAAAcgcg        >  1:2615846/1‑35 (MQ=255)
                            aaTCCACAGCCGAAGATTCATCGCGCGCAAAcgcg        >  1:3837296/1‑35 (MQ=255)
                             cccccCAGCCGAAGATTCATCGCGCGCAAACgcgc       >  1:3342057‑M1/6‑35 (MQ=255)
                             cccccCAGCCGAAGATTCATCGCGCGCAAACgcgc       >  1:17367152‑M1/6‑35 (MQ=255)
                              tCCACAGCCGAAGATTCATCGCGCGCAAACGCGCa      >  1:2849546/1‑35 (MQ=255)
                               cccCAGCCGAAGATTCATCGCGCGCAAACGCGCAt     >  1:666022‑M1/4‑35 (MQ=255)
                               cccCAGCCGAAGATTCATCGCGCGCAAACGCGCAt     >  1:8563648‑M1/4‑35 (MQ=255)
                               cccCAGCCGAAGATTCATCGCGCGCAAACGCGCAt     >  1:5405107‑M1/4‑35 (MQ=255)
                               ccACAGCCGAAGATTCATCTCGCGCAAACGCGCAt     >  1:19584499/1‑35 (MQ=255)
                               ccACAGCCGAAGATTCATCGCGCGCAAACGCGCAt     >  1:11153898/1‑35 (MQ=255)
                               ccACAGCCGAAGATTCATCGCGCGCAAACGCGCAt     >  1:12110392/1‑35 (MQ=255)
                                ccCAGCCGAAGATTCATCGCGCGCAAACGCGCAtt    >  1:15460435‑M1/3‑35 (MQ=255)
                                ccCAGCCGAAGATTCATCGCGCGCAAACGCGCAtt    >  1:1128996‑M1/3‑35 (MQ=255)
                                cacaGCCGAAGATTCATCGCGCGCAAACGCGCAtt    >  1:17749040/1‑35 (MQ=255)
                                 cCAGCCGAAGATTCATCGCGCGCAAACGCGCATTc   >  1:6208226‑M1/2‑35 (MQ=255)
                                 cCAGCCGAAGATTCATCGCGCGCAAACGCGCATTc   >  1:5327898‑M1/2‑35 (MQ=255)
                                 cCAGCCGAAGATTCATCGCGCGCAAACGCGCATTc   >  1:9634216‑M1/2‑35 (MQ=255)
                                 acaGCCGAAGATTCATCGCGCGCAAACGCGCATTc   >  1:16847567/1‑35 (MQ=255)
                                  CAGCCGAAGATTCATCGCGCGCAAACGCGCATTCa  >  1:7039656‑M1/1‑35 (MQ=255)
                                  CAGCCGAAGATTCATCGCGCGCAAACGCGCATTCa  >  1:18707178‑M1/1‑35 (MQ=255)
                                  CAGCCGAAGATTCATCGCGCGCAAACGCGCATTCa  >  1:14641322‑M1/1‑35 (MQ=255)
                                  CAGCCGAAGATTCATCGCGCGCAAACGCGCATTCa  <  1:9237465‑M1/35‑1 (MQ=255)
                                  CAGCCGAAGATTCATCGCGCGCAAACGCGCATTCa  <  1:16715338‑M1/35‑1 (MQ=255)
                                  CAGCCGAAGATTCATCGCGCGCAAACGCGCATTCa  <  1:4917651‑M1/35‑1 (MQ=255)
                                  |                                  
GCGGTTAACACAGCGGCTGAATCAGCAAAATCCACAGCCGAAGATTCATCGCGCGCAAACGCGCATTCA  >  REL606/2556076‑2556144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.