New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 519489 =96 (0.930)12 (0.160) 3/36 NT 16.6% coding (644/1668 nt) fdrA membrane protein FdrA
?REL606 1815514 = 49 (0.640)coding (1030/1491 nt) ynjC fused transporter subunits of ABC superfamily: membrane components

CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/519528‑519489
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccaCTGGTGGCGGGCCAGTACACGCTGGCGCTATGGC  >  REL606/1815514‑1815547
                                                                          
CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC                                         >  1:3196271/1‑35
CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC                                         >  1:2846589/1‑35
CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC                                         <  1:2452752/35‑1
CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC                                         <  1:11895528/35‑1
CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC                                         >  1:8428596/1‑35
CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC                                         <  1:1530683/35‑1
CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCC                                         <  1:13981818/35‑1
 CGCCAAGGCCAATCGCGTGTGTAATTCCCTCCCCT                                        <  1:14487489/35‑1
 CGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCT                                        <  1:540323/35‑1
 CGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCT                                        <  1:6129063/35‑1
 CGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCT                                        >  1:2019941/1‑35
 CGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCT                                        >  1:8691046/1‑35
 CGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCT                                        >  1:9475908/1‑35
  GCCAAGGCCGATCGCGTGAGTAATTCCCTCCCCTG                                       <  1:3747388/35‑1
  GCCAAGGCCAATCGCGTGAGTAATTCCNTCCCCTG                                       <  1:842706/35‑1
  GCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTG                                       <  1:5270347/35‑1
  GCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTG                                       >  1:7793265/1‑35
  GCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTG                                       <  1:16226299/35‑1
  GCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTG                                       <  1:12379275/35‑1
  GCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTG                                       <  1:1334486/35‑1
   CCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGC                                      >  1:1379718/1‑35
   CCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGC                                      >  1:9435148/1‑35
   CCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGC                                      <  1:16815011/35‑1
   CCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGC                                      <  1:5248181/35‑1
   CCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGC                                      >  1:18879820/1‑35
    CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCg                                     >  1:176039/1‑34
    CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC                                     <  1:8522389/35‑1
    CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC                                     >  1:14855287/1‑35
    CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC                                     >  1:4872295/1‑35
    CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC                                     >  1:3679277/1‑35
    CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC                                     <  1:3339919/35‑1
    CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC                                     >  1:19480635/1‑35
    CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC                                     <  1:10638047/35‑1
    CAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCC                                     <  1:3158000/35‑1
     AAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCCA                                    >  1:6418095/1‑35
     AAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCCA                                    >  1:6870233/1‑35
     AAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCCA                                    >  1:14865770/1‑35
     AAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCCA                                    >  1:15297968/1‑35
                        ttcCCCTCCCCTGCCACTGGTGGCGGGCCAGTACA                 <  1:19209625/32‑1
                         TTCCCTGCCCTGCCACTGGTGGCGGGCCAGTACAC                <  1:8889608/35‑1
                         TTCCCTCCCCTGCCACTGGTGGCGGGCCAGTACAC                <  1:6138717/35‑1
                          TCCCTCCCCTGCCACTGGTGGCGGGCCAGTACACG               <  1:1683536/35‑1
                          TCCCGCCCCTGCCACTGGTGGCGGGCCAGTACACG               <  1:14122665/35‑1
                           CCCTGCCCTGCCACTGGTGGCGGGCCAGTACACGC              <  1:5324515/35‑1
                           CCCTCCCCTGCCACTGGTGGCGGGCCAGTACACGC              <  1:4864983/35‑1
                           CCCTCCCCTGCCACTGGTGGCGGGCCAGTACACGC              <  1:17949951/35‑1
                           CCCGCCCCTGCCACTGGTGGCGGGCCAGTACACGC              <  1:11872984/35‑1
                           CCCGCCCCTGCCACTGGTGGCGGGCCAGTACACGC              <  1:19340800/35‑1
                           CCCGCCCCTGCCACTGGTGGCGGGCCAGTACACGC              <  1:13665456/35‑1
                           CCCCCCCCTGCCACTGGTGGCGGGCCAGTACACGC              <  1:933670/35‑1
                             ctgCCCTGCCACTGGTGGCGGGCCAGTACACGCTG            <  1:11848086/32‑1
                             cgCCCCTGCCACTGGTGGCGGGCCAGTACACGCTG            <  1:1027255/33‑1
                             cgCCCCTGCCACTGGTGGCGGGCCAGTACACGCTG            <  1:5344929/33‑1
                             CTCCCCTGCCACTGGTGGCGGGCCAGTACACGCTG            <  1:9262874/35‑1
                               CCCCTGCCACTGGTGGCGGGCCAGTACACGCTGGC          <  1:14986054/35‑1
                                CCCTGCCACTGGTGGCGGGCCAGTACACGCTGGCG         <  1:10500668/35‑1
                                CCCTGCCACTGGTGGCGGGCCAGTACACGCTGGCG         <  1:11866047/35‑1
                                  CTGCCACTGGTGGCGGGGCAGTACACGCTGGCGCT       >  1:16334997/1‑35
                                  CTGCCACTGGTGGCGGGCCAGTACACGCTGGCGCT       <  1:7553831/35‑1
                                  CTGCCACTGGTGGCGGGCAAGTACACGCTGGCGCT       <  1:2629762/35‑1
                                   tctCACTGGTGGCGGGCCAGTACACGCTGGCGCTA      <  1:8522403/32‑1
                                   TGCCACTGGTGGCGGGCCAGTACACGCTGGGGCTA      >  1:13374867/1‑35
                                   TGCCACTGGTGGCGGGCCAGTACACGCTGGCGCTA      <  1:9815536/35‑1
                                   TGCCACTGGTGGCGGGCCAGTACACGCTGGCGCTA      <  1:5264440/35‑1
                                    GCCACTGGTGGCGGGCCAGTACACGCTGGCGCTAT     <  1:8034135/35‑1
                                     caACTGGTGGCGGGCCAGTACACGCTGGCGCTATG    <  1:15413413/33‑1
                                     CCACTGGTGGCGGGCCAGTACACGCTGGCGCTATG    <  1:19351313/35‑1
                                     CCACTGGTGGCGGGCCAGTACACGCTGGCGCTATG    <  1:14336194/35‑1
                                      CACTGGTGGCGGGCCAGTACACGCTGGCGCTATGG   <  1:7488593/35‑1
                                      CACTGGTGGCGGGCCAGTACACGCTGGCGCTATGG   <  1:6209626/35‑1
                                      CACTGGTGGCGGGCCAGTACACGCTGGCGCTATGG   <  1:5366340/35‑1
                                      CACTGGTGGCGGACCAGTACACGCTGGCGCTATGG   <  1:538586/35‑1
                                       ACTGGTGGCGGGCCAGTACACGCTGGCGCTATGGC  <  1:7658618/35‑1
                                       ACTGGTGGCGGGCCAGTACACGCTGGCGCTATGGC  <  1:5089823/35‑1
                                                                          
CCGCCAAGGCCAATCGCGTGAGTAATTCCCTCCCCTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/519528‑519489
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccaCTGGTGGCGGGCCAGTACACGCTGGCGCTATGGC  >  REL606/1815514‑1815547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.