New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3281469 =113 (1.100)21 (0.220) 7/44 NT 18.2% coding (62/288 nt) yhbH predicted ribosome‑associated, sigma 54 modulation protein
?REL606 = 4043982 85 (0.900)coding (42/1404 nt) yihO predited transporter

Only 100 of 181 total aligned reads displayed.

AACCAACGTCGCCCATACCATAGGCGATTTTTTCCCACAGATTCAGTTTTAATGTCAGTGGATTATGGT  >  REL606/4043948‑4044016
                                  |                                  
aaCCAACGTCGCCCATACCATAGGCGATTTTTTcc                                    >  1:3590960/1‑35 (MQ=255)
aaCCAACGTCGCCCATACCATAGGCGATTTTTTcc                                    >  1:11708470/1‑35 (MQ=255)
 aCCAACGTCGCCCATACCATAGGCGATTTTTTtcc                                   >  1:18307971/1‑35 (MQ=255)
 aCCAACGTCGCCCATACCATAGGCGATTTTTTCCc                                   >  1:20368352‑M2/1‑34 (MQ=255)
 aCCAACGTCGCCCATACCATAGGCGATTTTTTCCc                                   <  1:2003310‑M2/35‑2 (MQ=255)
 aCCAACGTCGCCCATACCATAGGCGATTTTTTCCc                                   >  1:16019840‑M2/1‑34 (MQ=255)
  ccAACGTCGCCCATACCATAGGCGATTTTTTCCca                                  >  1:6389363‑M2/1‑33 (MQ=255)
   cAACGTCGCCCATACCATAGGCGATTTTTTCCcac                                 <  1:5413887/35‑1 (MQ=255)
   cAACGTCGCCCATACCATAGGCGATTTTTTCCcac                                 >  1:18888934/1‑35 (MQ=255)
   cAACGTCGCCCATACCATAGGCGATTTTTTCCcac                                 >  1:18563883/1‑35 (MQ=255)
    aaCGTCGCCCATACCATAGGCGATTTTTTCCcccc                                <  1:4821611‑M2/35‑5 (MQ=255)
    aaCGTCGCCCATACCATAGGCGATTTTTTCCcaca                                <  1:20105295/35‑1 (MQ=255)
    aaCGTCGCCCATACCATAGGCGATTTTTTCCcaca                                <  1:10916584/35‑1 (MQ=255)
     aCGTCGCCCATACCATAGGCGATTTTTTCCCACAg                               >  1:2837257/1‑35 (MQ=255)
     aCGTCGCCCATACCATAGGCGATTTTTTCCCACAg                               >  1:18581740/1‑35 (MQ=255)
      cGTCGCCCATACCATAGGCGATTTTTTCCCACAGa                              <  1:7127857/35‑1 (MQ=255)
      cGTCGCCCATACCATAGGCGATTTTTTCCCACAGa                              >  1:17831840/1‑35 (MQ=255)
      cGTCGCCCATACCATAGGCGATTTTTTCCCACAGa                              <  1:13656862/35‑1 (MQ=255)
      cGTCGCCCATACCATAGGCGATTTTTTCCCACAGa                              >  1:18485678/1‑35 (MQ=255)
       gTCGCCCATACCATAGGCGATTTTTTTCCCCAGAt                             >  1:6897713/1‑35 (MQ=37)
       gTCGCCCATACCATAGGCGATTTTTTCCCCCAGAt                             >  1:5835320/1‑35 (MQ=255)
       gTCGCCCATACCATAGGCGATTTTTTCCCCCAGAt                             >  1:14041770/1‑35 (MQ=255)
       gTCGCCCATACCATAGGCGATTTTTTCCCACAGAt                             <  1:19898173/35‑1 (MQ=255)
       gTCGCCCATACCATAGGCGATTTTTTCCCACAGAt                             >  1:624170/1‑35 (MQ=255)
       gTCGCCCATACCATAGGCGATTTTTTCCCACAGAt                             >  1:1072693/1‑35 (MQ=255)
        tCGCCCATACCATAGGCGATTTTTTCCCACAGAtt                            <  1:4793053/35‑1 (MQ=255)
        tCGCCCATACCATAGGCGATTTTTTCCCACAGAtt                            >  1:422893/1‑35 (MQ=255)
        tCGCCCATACCATAGGCGATTTTTTCCCACAGAtt                            >  1:8444986/1‑35 (MQ=255)
         cGCCCATACCATAGGCGATTTTTTCCCACAGATTc                           <  1:2043848/35‑1 (MQ=255)
          gCCCATACCATAGGCGATTTTTTCCCACAGATTCa                          <  1:14658662/35‑1 (MQ=255)
           cccATACCATAGGCGATTTTTTCCCACAGATTCAg                         >  1:15146582/1‑35 (MQ=255)
           cccATACCATAGGCGATTTTTTCCCACAGATTCAg                         <  1:3845740/35‑1 (MQ=255)
           cccATACCATAGGCGATTTTTTCCCACAGATTCAg                         >  1:3748846/1‑35 (MQ=255)
            ccataccataGGCGATTTTTTCCCACAGATTCAGt                        <  1:6716623/35‑1 (MQ=255)
             cataccataGGCGATTTTTTCCCACAGATTCAGtt                       <  1:2418987/35‑1 (MQ=255)
             cataccataGGCGATTTTTTCCCACAGATTCAGtt                       <  1:14112786/35‑1 (MQ=255)
             cataccataGGCGATTTTTTCCCACAGATTCAGtt                       <  1:17307702/35‑1 (MQ=255)
              ataccataGGCGATTTTTTCCCCCAGATTCAGttt                      >  1:14590397/1‑35 (MQ=255)
              ataccataGGCGATTTTTTCCCCCAGATTCAGttt                      >  1:18273715/1‑35 (MQ=255)
              ataccataGGCGATTTTTTCCCACAGATTCAGttt                      >  1:3024727/1‑35 (MQ=255)
              ataccataGGCGATTTTTTCCCACAGATTCAGttt                      <  1:4167617/35‑1 (MQ=255)
              ataccataGGCGATTTTTTCCCACAGATTCAGttt                      <  1:4325813/35‑1 (MQ=255)
              ataccataGGCGATTTTTTCCCACAGATTCAGttt                      <  1:9136643/35‑1 (MQ=255)
              ataccataGGCGATTTTTTCCCACAGATTCAGttt                      <  1:14937132/35‑1 (MQ=255)
               taccataGGCGATTTTTTCCCACAGATTCAGtttt                     <  1:15784520/35‑1 (MQ=255)
                accataGGCGATTTTTTCCCACAGATTTAGTTTTa                    >  1:2532710/1‑35 (MQ=255)
                accataGGCGATTTTTTCCCACAGATTCAGTTTTa                    <  1:13811890/35‑1 (MQ=255)
                 ccataGGCGATTTTTTCCCACAGATTCAGTTTTaa                   <  1:3401906/35‑1 (MQ=255)
                   ataGGCGATTTTTTCCCACAGATTCAGTTTTAATg                 <  1:14390221/35‑1 (MQ=255)
                    taGGCGATTTTTTCCCACAGATTCAGTTTTAATGt                <  1:18086601/35‑1 (MQ=255)
                    taGGCGATTTTTTCCCACAGATTCAGTTTTAATGt                >  1:11642804/1‑35 (MQ=255)
                     aGGCGATTTTTTCCCACAGATTCAGTTTTAATGTc               <  1:10788110/35‑1 (MQ=255)
                     aGGCGATTTTTTCCCACAGATTCAGTTTTAATGTc               <  1:1628892/35‑1 (MQ=255)
                     aGGCGATTTTTTCCCACAGATTCAGTTTTAATGTc               >  1:13964923/1‑35 (MQ=255)
                     aGGCGATTTTTTCCCACAGATTCAGTTTTAATGTc               >  1:10279640/1‑35 (MQ=255)
                      ggCGATTTTTTCCCACAGATTCAGTTTTAATGTCa              <  1:9801433/35‑1 (MQ=255)
                      ggCGATTTTTTCCCACAGATTCAGTTTTAATGTCa              <  1:20134727/35‑1 (MQ=255)
                      ggCGATTTTTTCCCACAGATTCAGTTTTAATGTCa              >  1:15338457/1‑35 (MQ=255)
                       gCGATTTTTTCCcagccaaatttgccaaacttgag             >  1:8692780‑M2/1‑12 (MQ=255)
                       gCGATTTTTTCCCACAGATTCAGTTTTAATGTCAg             <  1:11871290/35‑1 (MQ=255)
                       gCGATTTTTTCCCACAGATTCAGTTTTAATGTCAg             <  1:6455308/35‑1 (MQ=255)
                       gCGATTTTTTCCCACAGATTCAGTTTTAATGTCAg             >  1:16081939/1‑35 (MQ=255)
                       gCGATTTTTTCCCACAGATTCAGTTTTAATGTCAg             >  1:1821070/1‑35 (MQ=255)
                       gCGATTTTGTCCcagccaaatttgccaaacttgag             >  1:12247741‑M2/1‑12 (MQ=255)
                       gCGATTTTGTCCcagccaaatttgccaaacttgag             >  1:5780013‑M2/1‑12 (MQ=255)
                        cGATTTTTTCCCACAGATTCAGTTTTAATGTCAGt            <  1:16588124/35‑1 (MQ=255)
                        cGATTTTTTCCCACAGATTCAGTTTTAATGTCAGt            <  1:19670605/35‑1 (MQ=255)
                        cGATTTTTTCCCACAGATTCAGTTTTAATGTCAGt            <  1:18405452/35‑1 (MQ=255)
                         gATTTTTTCCCACAGATTCAGTTTTAATGTCAggg           >  1:7255233/1‑33 (MQ=255)
                         gATTTTTTCCCACAGATTCAGTTTTAATGTCAGTg           <  1:105216/35‑1 (MQ=255)
                         gATTTTTTCCAACAGATTCAGTTTTAATGTCAGTg           <  1:8214837/35‑1 (MQ=255)
                         gATTTTGTCCcagccaaatttgccaaacttgagca           >  1:5965406‑M2/1‑10 (MQ=255)
                          aTTTTTTCCCACAGATTCAGTTTTAATGTCAGTgg          <  1:4116490/35‑1 (MQ=255)
                          aTTTTTTCCCACAGATTCAGTTTTAATGTCAGTgg          <  1:17133264/35‑1 (MQ=255)
                          aTTTTTTCCCACAGATTCAGTTTTAATGTCAGTgg          <  1:4526856/35‑1 (MQ=255)
                          aTTTTGTCCcagccaaatttgccaaacttgagcaa          >  1:12864044‑M2/1‑9 (MQ=255)
                           ttttttCCCACAGATTCAGTTTTAATGTCAGTGGa         <  1:13319538/35‑1 (MQ=255)
                            tttttTCcagccaaatttgccaaacttgagcaata        >  1:6156943‑M2/1‑7 (MQ=255)
                            tttttCCcagccaaatttgccaaacttgagcaata        >  1:9328863‑M2/1‑7 (MQ=255)
                            tttttCCCACAGATTCAGTTTTAATGTCAGTGGAt        <  1:19540208/35‑1 (MQ=255)
                            tttttCCCACAGATTCAGTTTTAATGTCAGGgggt        >  1:19306758/1‑33 (MQ=38)
                            tttttCCCACAGATTCAGTTTTAATGTCAGGgggt        >  1:15734884/1‑33 (MQ=38)
                             ttttCCcagccaaatttgccaaacttgagcaatat       >  1:9043253‑M2/1‑6 (MQ=255)
                             ttttCCCACAGATTCAGTTTTAATGTCAGGggggt       >  1:19737754/1‑32 (MQ=37)
                              tttCCcagccaaatttgccaaacttgagcaatatt      >  1:17865687‑M2/1‑5 (MQ=255)
                              tttCCCACAGATTCAGTTTTAATGTCAGTGGATTa      <  1:11190783/35‑1 (MQ=255)
                               ttCCCACAGATTCAGTTTTAATGTCAGTGGATTAt     <  1:20585562/35‑1 (MQ=255)
                               ttCCCACAGATTCAGTTTTAATGTCAGTGGATTAt     <  1:8125753/35‑1 (MQ=255)
                               ttCCCACAGATTCAGTTTTAATGTCAGTGGATTAt     <  1:565933/35‑1 (MQ=255)
                               gtcCcagccaaatttgccaaacttgagcaatattt     >  1:10845657‑M2/2‑4 (MQ=255)
                               ctcCcagccaaatttgccaaacttgagcaatattt     >  1:2209296‑M2/2‑4 (MQ=255)
                                tCCcagccaaatttgccaaacttgagcaatatttt    >  1:8675197‑M2/1‑3 (MQ=255)
                                tCCCACAGATTCAGTTTTAATGTCATTGGATTATg    >  1:16449592/1‑35 (MQ=255)
                                tCCCACAGATTCAGTTTTAATGTCAGTGGATTATg    <  1:17567795/35‑1 (MQ=255)
                                 tccagccaaatttgccaaacttgagcaatattttg   >  1:12902545‑M2/2‑2 (MQ=255)
                                 cccagccaaatttgccaaacttgagcaatattttg   >  1:18123752‑M2/1‑2 (MQ=255)
                                 cccACAGATTCAGTTTTAATGTCAGTGGATTATgg   <  1:7814460/35‑1 (MQ=255)
                                 cccACAGATTCAGTTTTAATGTCAGGGGGATATgg   >  1:4976262/1‑35 (MQ=25)
                                 cccACAGATTCAGTTTTAATGTCAGGGGAGTAttg   >  1:7818861/1‑33 (MQ=25)
                                  ccACAGATTCAGTTTTAATGTCAGTGGATTATGGt  <  1:12550055/35‑1 (MQ=255)
                                  |                                  
AACCAACGTCGCCCATACCATAGGCGATTTTTTCCCACAGATTCAGTTTTAATGTCAGTGGATTATGGT  >  REL606/4043948‑4044016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.