New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 842815 | 109 (1.060) | 4 (0.040) | 3/44 | NT | 4.8% | intergenic (‑93/‑260) | ybiF/ompX | threonine and homoserine efflux system/outer membrane protein X |
? | REL606 | 3607355 = | 58 (0.620) | coding (503/2076 nt) | yhjG | predicted outer membrane biogenesis protein |
Only 100 of 138 total aligned reads displayed.
GGCGATCCGCCCTTGATCGAAAAGAATATTATCCAGCCGAAACGACCATGCCGACGGCTTTGCATTCGC > REL606/3607321‑3607389 | tgctggttgagcatttgttgaaaaaattttcccca < 1:15556376‑M2/1‑1 (MQ=255) ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa < 1:7147298/35‑1 (MQ=255) ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa < 1:6883759/35‑1 (MQ=255) ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa > 1:5426605/1‑35 (MQ=255) ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa > 1:20260297/1‑35 (MQ=255) ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa < 1:1879999/35‑1 (MQ=255) ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa < 1:1483807/35‑1 (MQ=255) ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa > 1:10191313/1‑35 (MQ=255) ggCGATCCGCCCTTGATCGAAAAGAATATTATCCa < 1:10835090/35‑1 (MQ=255) cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc > 1:15311072/1‑35 (MQ=255) cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc > 1:12252635/1‑35 (MQ=255) cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc > 1:3752758/1‑35 (MQ=255) cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc < 1:7111894/35‑1 (MQ=255) cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc < 1:20138000/35‑1 (MQ=255) cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc < 1:20046069/35‑1 (MQ=255) cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc > 1:17340398/1‑35 (MQ=255) cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc > 1:18143628/1‑35 (MQ=255) cGATCCGCCCTTGATCGAAAAGAATATTATCCAGc > 1:18008167/1‑35 (MQ=255) gATCCGCCCTTGATCGAAAAGAATATTATCCAGcc > 1:12886428/1‑35 (MQ=255) gATCCGCCCTTGATCGAAAAGAATATTATCCAGcc < 1:13579355/35‑1 (MQ=255) gATCCGCCCTTGATCGAAAAGAATATTATCCAGcc < 1:4206321/35‑1 (MQ=255) gATCCGCCCTTGATCGAAAAGAATATTATCCAGcc < 1:16520103/35‑1 (MQ=255) aTCCGCCCTTGATCGAAAAGAATATTATCCAGCCg > 1:1099492/1‑35 (MQ=255) aTCCGCCCTTGATCGAAAAGAATATTATCCAGCCg > 1:18698720/1‑35 (MQ=255) aTCCGCCCTTGATCGAAAAGAATATTATCCAGCCg > 1:2584628/1‑35 (MQ=255) tCCGCCCTTGATCGAAAAGAATATTATCCAGCCGa > 1:9253165/1‑35 (MQ=255) tCCGCCCTTGATCGAAAAGAATATTATCCAGCCGa > 1:12072465/1‑35 (MQ=255) tCCGCCCTTGATCGAAAAGAATATTATCCAGCCGa > 1:15666278/1‑35 (MQ=255) cccTTGATCGAAAAGAATATTATCCAGCCGAAACg > 1:18200755/1‑35 (MQ=255) ccTTGATCGAAAAGAATATTATCCAGCCGAAACGa > 1:6670915/1‑35 (MQ=255) cTTGATCGAAAAGAATATTATCCAGCCGAAACGAc > 1:5869041/1‑35 (MQ=255) tGATCGAAAAGAATATTATCCAGCCGAAACGACCa > 1:4826872/1‑35 (MQ=255) gttCGAAAAGAATATTATCCAGCCGAAACGACCAt > 1:7528222/3‑35 (MQ=255) gATCGAAAAGAATATTATCCAGCCGAAACGACCAt > 1:8343393/1‑35 (MQ=255) gATCAAAAAAAATATTACCCAGCCGAAACGACAAt < 1:7694041/35‑1 (MQ=16) aTCGAAAAGAATATTATCCAGCCGAAACGACCATg > 1:4620095/1‑35 (MQ=255) aTCGAAAAGAATATTATCCAGCCGAAACGACCATg > 1:16379437/1‑35 (MQ=255) tCGAAAAGAATATTATCCAGCCGAAACGACCATGc > 1:589573/1‑35 (MQ=255) tCGAAAAGAATATTATCCAGCCGAAACGACCATGc > 1:6355489/1‑35 (MQ=255) cGAAAAGAATATTATCCAGCCGAAACGACCATGcc > 1:12612067/1‑35 (MQ=255) cGAAAAGAATATTATCCAGCCGAAACGACCATGcc > 1:14022250/1‑35 (MQ=255) gAAAAGAATATTATCCAGCCGAAACGACCATGCCg > 1:19154766/1‑35 (MQ=255) gAAAAGAATATTATCCAGCCGAAACGACCATGCCg > 1:15129351/1‑35 (MQ=255) aaaaaaaattttccccAGCCGAAACGACCATGCCg < 1:4656822‑M2/19‑1 (MQ=255) aaaaGAATATTATCCAGCCGAAACGACCATGCCGa > 1:16233631/1‑35 (MQ=255) aaaGAATATTATCCAGCCGAAACGACCATGCCGAc > 1:4808342/1‑35 (MQ=255) aaaGAATATTATCCAGCCGAAACGACCATGCCGAc > 1:7024030/1‑35 (MQ=255) aaaGAATATTATCCAGCCGAAACGACCATGCCGAc > 1:9129218/1‑35 (MQ=255) aaaaattttccccAGCCGAAACGACCATGCCGACg < 1:6039924‑M2/22‑1 (MQ=255) aaGAATATTATCCAGCCGACACGACCATGCCGACg > 1:5602138/1‑35 (MQ=255) aaGAATATTATCCAGCCGAAACGACCATGCCGACg > 1:14407727/1‑35 (MQ=255) aaGAATATTATCCAGCCGAAACGACCATGCCGACg > 1:11426443/1‑35 (MQ=255) aaGAATATTATCCAGCCGAAACGACCATGCCGACg > 1:10266753/1‑35 (MQ=255) aGAATATTATCCAGCCGAAACGACCATGCCGActg > 1:19484287/1‑33 (MQ=255) aGAATATTATCCAGCCGAAACGACCATGCCGACgg > 1:9392500/1‑35 (MQ=255) aGAATATTATCCAGCCGAAACGACCATGCCGACgg > 1:16328216/1‑35 (MQ=255) aGAATATTATCCAGCCGAAACGACCATGCCGACgg > 1:15039175/1‑35 (MQ=255) gAATATTATCCAGCCGAAACGACCATGCCGACGGc > 1:2715356/1‑35 (MQ=255) aaTATTATCCAGCCGAAACGACCATGCCGACTGCt > 1:3566469/1‑35 (MQ=255) aaTATTATCCAGCCGAAACGACCATGCCGACGGCt > 1:6733370/1‑35 (MQ=255) aaTATTATCCAGCCGAAACGACCATGCCGACGGCt > 1:10272617/1‑35 (MQ=255) aaTATTATCCAGCCGAAACGACCATGCCGACGGCt > 1:14242531/1‑35 (MQ=255) aaTATTATCCAGCCGAAACGACCATGCCGACGGCt > 1:15470974/1‑35 (MQ=255) atatTATCCAGCCGAAACGACCATGCCGACGGCtt > 1:5728277/1‑35 (MQ=255) atatTATCCAGCCGAAACGACCATGCCGACGGCtt > 1:7562227/1‑35 (MQ=255) ttttccccAGCCGAAACGACCATGCCGACGGCttt < 1:9140108‑M2/27‑1 (MQ=255) tattccccAGCCGAAACGACCATGCCGACGGCttt < 1:10969573‑M2/27‑1 (MQ=255) tattatCCAGCCGAAACGACCATGCCGACGGCttt > 1:3835764/1‑35 (MQ=255) tattatCCAGCCGAAACGACCATGCCGACGGCttt > 1:12830893/1‑35 (MQ=255) attatCCAGCCGAAACGACCATGCCGACGGCTTTg > 1:13468403/1‑35 (MQ=255) attatCCAGCCGAAACGACCATGCCGACGGCTTTg > 1:5933516/1‑35 (MQ=255) attatCCAGCCGAAACGACCATGCCGACGGCTTTg > 1:3202844/1‑35 (MQ=255) ttatCCAGCCGAAACGACCATGCCGACGGCTTTGc > 1:4485184/1‑35 (MQ=255) tccccAGCCGAAACGACCATGCCGACGGCTTTGCa < 1:3195943‑M2/30‑1 (MQ=255) tatCCAGCCGAAACGACCATGCCGACGGCTTTGCa > 1:3096649/1‑35 (MQ=255) tatCCAGCCGAAACGACCATGCCGACGGCTTTGCa > 1:19243602/1‑35 (MQ=255) ccccAGCCGAAACGACCATGCCGACGGCTTTGCAt < 1:6014140‑M2/31‑1 (MQ=255) ccccAGCCGAAACGACCATGCCGACGGCTTTGCAt < 1:3606323‑M2/31‑1 (MQ=255) ccccAGCCGAAACGACCATGCCGACGGCTTTGCAt < 1:8831100‑M2/31‑1 (MQ=255) ccccACCCGAAACGACCATGCCGACGGCTTTGCAt < 1:5470849‑M2/31‑1 (MQ=255) atCCAGCCGAAACGACCATGCCGACGGCTTTGCAt > 1:9152932/1‑35 (MQ=255) atCCAGCCGAAACGACCATGCCGACGGCTTTGCAt > 1:6894548/1‑35 (MQ=255) atCCAGCCGAAACGACCATGCCGACGGCTTTGCAt > 1:13721630/1‑35 (MQ=255) tCCAGCCGAAACGACCATGCCGACGGCTCTGCAtt > 1:862062/1‑35 (MQ=255) cccAGCCGAAACGACCATGCCGACGGCTTTGCAtt < 1:5656022‑M2/32‑1 (MQ=255) cccACCCGAAACGACCATGCCGACGGCTTTGCAtt < 1:8395603‑M2/32‑1 (MQ=255) ccAGCCGAAACGACCATGCCGACGGCTTTGCATTc > 1:15770450‑M2/3‑35 (MQ=255) ccAGCCGAAACGACCATGCCGACGGCTTTGCATTc < 1:15140136‑M2/33‑1 (MQ=255) ccAGCCGAAACGACCATGCCGACGGCTTTGCATTc > 1:12172021‑M2/3‑35 (MQ=255) ccAGCCGAAACGACCATGCCGACGGCTTTGCATTc > 1:4512440‑M2/3‑35 (MQ=255) ccAGCCGAAACGACCATGCCGACGGCTTTGCATTc > 1:13378292‑M2/3‑35 (MQ=255) ccACCCGAAACGACCATGCCGACGGCTTTGCATTc < 1:4286379‑M2/33‑1 (MQ=255) cAGCCGAAACGACCATGCCGACGGCTTTGCATTCg > 1:16024010‑M2/2‑35 (MQ=255) cAGCCGAAACGACCATGCCGACGGCTTTGCATTCg < 1:16149704‑M2/34‑1 (MQ=255) aGCCGAACCGACCATGCCGACGGCTTTGCATTcgc < 1:17672350/35‑1 (MQ=255) aGCCGAAACGACCATGCCGACGGCTTTGCCTTcgc > 1:889928/1‑35 (MQ=255) aGCCGAAACGACCATGCCGACGGCTTTGCATTcgc > 1:11635802/1‑35 (MQ=255) aGCCGAAACGACCATGCCGACGGCTTTGCATTcgc < 1:13724836/35‑1 (MQ=255) aGCCGAAACGACCATGCCGACGGCTTTGCATTcgc > 1:14011579/1‑35 (MQ=255) aGCCAAAACGACCATGCCGACGGCTTTGCATTcgc < 1:5714144/35‑1 (MQ=255) | GGCGATCCGCCCTTGATCGAAAAGAATATTATCCAGCCGAAACGACCATGCCGACGGCTTTGCATTCGC > REL606/3607321‑3607389 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |