New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1731442 = | 72 (0.700) | 7 (0.070) | 3/46 | NT | 11.5% | coding (303/627 nt) | ydhY | predicted 4Fe‑4S ferridoxin‑type protein |
? | REL606 | 3480446 = | 39 (0.400) | coding (628/2394 nt) | malP | maltodextrin phosphorylase |
TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1731476‑1731442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAGCCGACAACGGGGAGATCCCACGCTTGACCGGT > REL606/3480446‑3480479 TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT > 1:8204953/1‑35 TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT > 1:614139/1‑35 TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT > 1:14093766/1‑35 TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT < 1:3055596/35‑1 TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT < 1:15822261/35‑1 TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT < 1:18558130/35‑1 ccATTTCTTTAGCCGACAACGGGGAGATCCCACGC < 1:189624/33‑1 cATTACTTTAGCCGACAACGGGGAGATCCCACGCT < 1:8399918/34‑1 TATTTCTTTAGCCGACAACGGGGAGATCCCACGCT < 1:2379837/35‑1 tTTTCTTTAGCCGACAACGGGGAGATCCCACGCTT < 1:10302034/34‑1 ATTTCTTTAGCCGACAACGGGGAGATCCCACGCTT < 1:8004776/35‑1 ttaCTTTAGCCGACAACGGGGAGATCCCACGCTTG < 1:10701339/32‑1 TTTTTTTAGCCGACAACGGGGAGATCCCACGCTTG < 1:1840389/35‑1 TTTGTTTAGCCGACAACGGGGAGATCCCACGCTTG < 1:7953395/35‑1 tagTTTAGCCGACAACGGGGAGATCCCACGCTTGA < 1:4661173/32‑1 tgTTTAGCCGACAACGGGGAGATCCCACGCTTGAC < 1:14405608/33‑1 gtTTTAGCCGACAACGGGGAGATCCCACGCTTGAC < 1:1937519/33‑1 aCTTTAGCCGACAACGGGGAGATCCCACGCTTGAC < 1:14380300/34‑1 tgTTAGCCGACAACGGGGAGATCCCACGCTTGACC < 1:16597841/33‑1 TTTAGCCGACAACGGGGAGATCCCACGCTTGACCG < 1:11809062/35‑1 gTAGCCGACAACGGGGAGATCCCACGCTTGACCGG < 1:438862/34‑1 TTAGCCGACAACGGGGAGATCCCACGCTTGACCGG < 1:15964466/35‑1 TTAGCCGACAACGGGGAGATCCCACGCTTGACCGG < 1:8289746/35‑1 TTAGCCGACAACGGGGAGATCCCACGCTTGACCGG < 1:17242474/35‑1 TAGCCGACAACGGGGAGATCCCACGCTTGACCGGT > 1:3434565/1‑35 TAGCCGACAACGGGGAGATCCCACGCTTGACCGGT > 1:5241236/1‑35 TAGCCGACAACGGGGAGATCCCACGCTTGACCGGT > 1:6911070/1‑35 TAGCCGACAACGGGGAGATCCCACGCTTGACCGGT < 1:8330811/35‑1 TCTCCCGTATCAAAATCCATCGCAATTATTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1731476‑1731442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAGCCGACAACGGGGAGATCCCACGCTTGACCGGT > REL606/3480446‑3480479 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |