New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2749601 | 109 (1.060) | 21 (0.230) | 6/42 | NT | 19.0% | coding (404/2079 nt) | fhlA | DNA‑binding transcriptional activator |
? | REL606 | 4351442 = | 84 (0.930) | intergenic (+50/‑88) | groEL/yjeI | chaperonin GroEL/hypothetical protein |
Only 100 of 203 total aligned reads displayed.
GCCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGC > REL606/2749566‑2749635 | ccACTGGCGGCGGAAGGGCATATTTTTGGTGGCTG < 1:571821‑M1/35‑1 (MQ=255) cACTGGCGGCGGAAGGGCATATTTTTGGTGGCtgt < 1:10502625/35‑1 (MQ=255) cACTGGCGGCGGAAGGGCATATTTTTGGTGGCtgt < 1:295298/35‑1 (MQ=255) cACTGGCGGCGGAAGGGCATATTTTTGGTGGCtgt < 1:2372661/35‑1 (MQ=255) cACTGGCGGCGGAAGGGCATATTTTTGGTGGCtgt < 1:16504723/35‑1 (MQ=255) cACTGGCGGCGGAAGGGCATATTTTTGGTGGCtgt < 1:13925310/35‑1 (MQ=255) aCTGGCGGCGGAAGGGCATATTTTTGGTGGCtgtg < 1:20084053/35‑1 (MQ=255) aCTGGCGGCGGAAGGGCATATTTTTGGTGGCtgtg < 1:14457020/35‑1 (MQ=255) cTGGCGGCGGAAGGGCATATTTTTGGTGGCTGggg > 1:14204639‑M1/1‑32 (MQ=255) cTGGCGGCGGAAGGGCATATTTTTGGTGGCTGTGa < 1:19124423/35‑1 (MQ=255) tGGCGGCGGAAGGGCATATTTTTGGTGGCTGTGaa < 1:4416679/35‑1 (MQ=255) tGGCGGCGGAAGGGCATATTTTTGGTGGCTGTGaa < 1:14994176/35‑1 (MQ=255) ggcggcGGAAGGGCATATTTTTGGTGGCTGggggg > 1:16711175‑M1/1‑30 (MQ=255) ggcggcGGAAGGGCATATTTTTGGTGGCTGTGAAt < 1:14334893/35‑1 (MQ=255) gcggcgGAAGGGCATATTTTTGGTGGCTGTGAAtt < 1:18774860/35‑1 (MQ=255) gcggcgGAAGGGCATATTTTTGGTGGCTGTGAAtt < 1:12973034/35‑1 (MQ=255) gcggcgGAAGGGCATATTTTTGGTGGCTGTGAAtt < 1:4838128/35‑1 (MQ=255) cggcggAAGGGCATATTTTTGGTGGCTGgggggtt > 1:19740305‑M1/1‑28 (MQ=255) cggcggAAGGGCATATTTTTGGTGGCTGgggggtt > 1:6121710‑M1/1‑28 (MQ=255) cggcggAAGGGCATATTTTTGGTGGCTGggggatt > 1:12194571‑M1/1‑28 (MQ=255) ggcggAAGGGCATATTTTTGGTGGCTGgggggttt > 1:6150378‑M1/1‑27 (MQ=255) ggcggAAGGGCATATTTTTGGTGGCTGgggggttt > 1:9153661‑M1/1‑27 (MQ=255) ggcggAAGGGCATATTTTTGGTGGCTGgggggttt > 1:14316633‑M1/1‑27 (MQ=255) ggcggAAGGGCATATTTTTGGTGGCTGTGAATTTa < 1:2465310/35‑1 (MQ=255) gcggAAGGGCATATTTTTGGTGGCTGggggttttt > 1:18550005‑M1/1‑26 (MQ=255) gcggAAGGGCATATTTTTGGTGGCTGTGAATTTAt < 1:13183411/35‑1 (MQ=255) cggAAGGGCATATTTTTGGTGGCTGTGAATTTAtt < 1:12336048/35‑1 (MQ=255) ggAAGGGCATATTTTTGGTGGCTGggggttttttt > 1:1805405‑M1/1‑24 (MQ=255) ggAAGGGCATATTTTTGGTGGCTGTGAATTTATTc < 1:17933725/35‑1 (MQ=255) ggAAGGGCATATTTTTGGTGGCTGGGGATTTTttt > 1:15326620/1‑34 (MQ=21) gAAGGGCATATTTTTGGTGGCTGTGAATTTATTCg < 1:19673727/35‑1 (MQ=255) aaGGGCATATTTTTGGTGGCTGTGAATTTATTCGt < 1:9932803/35‑1 (MQ=255) aGGGCATATTTTTGGTGGCTGggggtttttttttt > 1:764069‑M1/1‑21 (MQ=255) aGGGCATATTTTTGGTGGCTGTGAATTTATTCGtt < 1:16857195/35‑1 (MQ=255) gggCATATTTTTGGTGGCTGTGAATTTATTCGTTa < 1:6370183/35‑1 (MQ=255) gggCATATTTTTGGTGGCTGTGAATTTATTCGTTa < 1:6459814/35‑1 (MQ=255) ggCATATTTTTGGTGGCTGTGAATTTATTCGTTAt < 1:2021527/35‑1 (MQ=255) ggCATATTTTTGGTGGCTGTGAATTTATTCGTTAt < 1:4236006/35‑1 (MQ=255) ggCATATTTTTGGTGGCTGTGAATTTATTCGTTAt < 1:6724981/35‑1 (MQ=255) ggCATATTTTTGGTGGCTGTGAATTTATTCGTTAt < 1:8923519/35‑1 (MQ=255) cATATTTTTGGTGGCTGTGAATTTATTCGTTATGa < 1:16305802/35‑1 (MQ=255) cATATTTTTGGTGGCTGTGAATTTATTCGTTATGa < 1:11917360/35‑1 (MQ=255) atatTTTTGGTGGCTGTGAATTTATTCGTTATGAc < 1:11377045/35‑1 (MQ=255) atatTTTTGGTGGCTGTGAATTTATTCGTTATGAc < 1:13337334/35‑1 (MQ=255) atatTTTTGGTGGCTGTGAATTTATTCGTTATGAc < 1:2092689/35‑1 (MQ=255) atatTTTTGGTGGCTGTGAATTTATTCGTTATGAc < 1:8539517/35‑1 (MQ=255) tatTTTTGGTGGCTGTGAATTTATTCGTTATGACg < 1:19921928/35‑1 (MQ=255) tatTTTTGGTGGCTGTGAATTTATTCGTTATGACg < 1:11436159/35‑1 (MQ=255) tatTTTTGGTGGCTGTGAATTTATTCGTTATGACg < 1:19113347/35‑1 (MQ=255) tatTTTTGGTGGCTGTGAATTTATTCGTTATGACg < 1:9532890/35‑1 (MQ=255) tatTTTTGGTGGCTGTGAATTTATTCGTTATGACg < 1:7054575/35‑1 (MQ=255) tatTTTTGGTGGCTGTGAATTTATTCGTTATGACg < 1:4092337/35‑1 (MQ=255) tatTTTTCGTGGCTGTGAATTTATTCGTTATGACg < 1:15996188/35‑1 (MQ=255) atTTTTGGTGGCTGTGAATTTATTCGTTATGACGa < 1:7430601/35‑1 (MQ=255) atTTTTGGTGGCTGTGAATTTATTCGTTATGACGa < 1:1758434/35‑1 (MQ=255) tttttGGTGGCTGTGAATTTATTCGTTATGACGAt < 1:18392526/35‑1 (MQ=255) tttttGGTGGCTGTGAATTTATTCGTTATGACGAt < 1:19351542/35‑1 (MQ=255) ttttGGTGGCTGTGAATTTATTCGTTATGACGATc < 1:2735629/35‑1 (MQ=255) tttGGTGGCTGTGAATTTATTCGTTATGACGATCg < 1:4461583/35‑1 (MQ=255) tttGGTGGCTGTGAATTTATTCGTTATGACGATCg < 1:11693443/35‑1 (MQ=255) tttGGTGGCTGTGAATTTATTCGTTATGACGATCg < 1:8226529/35‑1 (MQ=255) tttGGTGGCTGTGAATTTATTCGTTATGACGATCg < 1:9350370/35‑1 (MQ=255) tttGGTGGCTGTGAATTTATTCGTTATGACGATCg < 1:18285812/35‑1 (MQ=255) tttGGTGGCTGTGAATTTATTCGTTATGACGATCg < 1:9811751/35‑1 (MQ=255) ttGGTGGCTGTGAATTTATTCGTTATGACGATCGc < 1:1117534/35‑1 (MQ=255) ttGGTGGCTGTGAATTTATTCGTTATGACGATCGc < 1:6646247/35‑1 (MQ=255) ttGGTGGCTGTGAATTTATTCGTTATGACGATCGc < 1:13452281/35‑1 (MQ=255) tggtggCTGTGAATTTATTCGTTATGACGATCGcc < 1:12250926/35‑1 (MQ=255) tggtggCTGTGAATTTATTCGTTATGACGATCGcc < 1:12712945/35‑1 (MQ=255) tggtggCTGTGAATTTATTCGTTATGACGATCGcc < 1:15232127/35‑1 (MQ=255) tggtggCTGTGAATTTATTCGTTATGACGATCGcc < 1:2298990/35‑1 (MQ=255) tggtggCTGTGAATTTATTCGTTATGACGATCGcc < 1:3406203/35‑1 (MQ=255) tggtggCTGTGAATTTATTCGTTATGACGATAGcc < 1:17105195/35‑1 (MQ=255) ggtggCTGTGAATTTATTCGTTATGACGATCGccc < 1:12815096/35‑1 (MQ=255) ggtggCTGTGAATTTATTCGTTATGACGATCGccc < 1:1820134/35‑1 (MQ=255) gtggCTGTGAATTTATTCGTTATGACGATCGcccc < 1:5090596/35‑1 (MQ=255) gtggCTGTGAATTTATTCGTTATGACGATCGcccc < 1:15112277/35‑1 (MQ=255) gtggCTGTGAATTTATTCGTTATGACGATCGcccc < 1:19158850/35‑1 (MQ=255) ggCTGTGAATTTATTCGTTATGACGATCGCCCCTg < 1:6851006/35‑1 (MQ=255) ggCTCTGAATTTATTCGTTATGACGATCGCCCCTg > 1:2583751/1‑35 (MQ=255) ggCTATGAATTTATTCGTTATGACGATCGCCCCTg < 1:8320645/35‑1 (MQ=255) gCTGTGAATTTATTCGTTATGACGATCGCCCCTgg < 1:4551542/35‑1 (MQ=255) gCTGTGAATTTATTCGTTATGACGATCGCCCCTgg < 1:12462151/35‑1 (MQ=255) gCTGTGAATTTATTCGTTATGACGATCGCCCCTgg < 1:5450053/35‑1 (MQ=255) gCTGTGAATTTATTCGTTATGACGATCGCCCCTgg < 1:17289987/35‑1 (MQ=255) gCTGTGAATTTATTCGTTATGACGATCGCCCCTgg > 1:15841205/1‑35 (MQ=255) cTGTGAATTTATTCGTTATGACGATCGCCCCTGGa > 1:4379130/1‑35 (MQ=255) cTGTGAATTTATTCGTTATGACGATCGCCCCTGGa > 1:11676380/1‑35 (MQ=255) cTGTGAATTTATTCGTTATGACGATCGCCCCTGGa > 1:11234192/1‑35 (MQ=255) cTGTGAATTTATTCGTTATGACGATCGCCCCTGGa < 1:18904346/35‑1 (MQ=255) cTGTGAATTTATTCGTTATGACGATCGCCCCTGGa > 1:19558667/1‑35 (MQ=255) tgtgAATTTATTCGTTATGACGATCGCCCCTGGAg < 1:13288758/35‑1 (MQ=255) tgtgAATTTATTCGTTATGACGATCGCCCCTGGAg > 1:19730158/1‑35 (MQ=255) gtgAATTTTTTCGTTATGACGATCGCCCCTGGAGc < 1:13720527/35‑1 (MQ=255) gtgAATTTATTCGTTATGACGATCGCCCCTTGAGc > 1:9856560/1‑35 (MQ=255) gtgAATTTATTCGTTATGACGATCGCCCCTGGAGc > 1:15442458/1‑35 (MQ=255) gtgAATTTATTCGTTATGACGATCGCCCCTGGAGc < 1:17359183/35‑1 (MQ=255) gtgAATTTATTCGTTATGACGATCGCCCCTGGAGc > 1:10838517/1‑35 (MQ=255) gtgAATTTATTCGTTATGACGATCGCCCCCGGAGc > 1:3914158/1‑35 (MQ=255) gtgAATTTATTCGTTATGACGATCGCACCTGGAGc < 1:581579/35‑1 (MQ=255) | GCCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGC > REL606/2749566‑2749635 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |