New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1947885 =81 (0.790)20 (0.200) 9/46 NT 16.6% coding (250/861 nt) cheR chemotaxis regulator, protein‑glutamate methyltransferase
?REL606 = 3428485 123 (1.250)coding (671/1338 nt) yhfM predicted fructoselysine transporter

GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1947919‑1947885
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGTTTTTAATTTCGCCGGTCATATAACAGATAG  <  REL606/3428485‑3428452
                                                                     
GCTGTAATCTAATCAGCACAGCGGTGAGTGGCAGG                                    >  1:5986825/1‑35
GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG                                    <  1:9956823/35‑1
GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG                                    <  1:8707681/35‑1
GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG                                    <  1:5617776/35‑1
GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG                                    <  1:3522224/35‑1
GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG                                    >  1:2955896/1‑35
GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG                                    >  1:2821985/1‑35
GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG                                    <  1:18501733/35‑1
GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG                                    <  1:12208597/35‑1
 CTGGAATCTAATCAGCACAGCGGTGAGTGGCAGGG                                   >  1:7575757/1‑35
 CTGGAATCTAATCAGCACAGCGGTGAGTGGCAGGG                                   >  1:10677923/1‑35
 CTGGAATCTAATCAGCACAGCGGTGAGTGGCAGGG                                   >  1:7904315/1‑35
  TGGAATCTAATCAGCACATCGGTGAGTGGCAGGGG                                  >  1:767713/1‑35
  TGGAATCTAATCAGCACAGCGGTGAGTGGCAGGGG                                  >  1:2870560/1‑35
  TGGAATCTAATCAGCACAGCGGTGAGTGGCAGGGG                                  >  1:7315372/1‑35
  TGGAATCTAATCAGCACAGCGGTGAGTGGCAGGGG                                  >  1:6788362/1‑35
  TGGAATCTAATCAGCACAGCGGTGAGTGGCAGGGG                                  >  1:8926115/1‑35
  TGGAATCTAATCAGCACAGCGGTGAGTGGCAGGGG                                  >  1:8954067/1‑35
   GGAATCTAATCAGCACAGCGGTGAGTGGCAGGGGG                                 >  1:12033896/1‑35
    GAATCTAATCAGCACAGCGGTGAGTGGCAGGGGGg                                >  1:16928297/1‑34
    GAATCTAATCAGCACAGCGGTGAGTGGCAGGGGGg                                >  1:1560105/1‑34
    GAATCTAATCAGCACAGCGGTGAGTGGCAGGGGGg                                >  1:7248720/1‑34
    GAATCTAATCAGCACAGCGGTGAGTGGCAGGGGGT                                >  1:14706172/1‑35
     AATCTAATCAGCACAGCGGTGAGTGGCAGGGGGTT                               >  1:19479692/1‑35
      ATCTAATCAGCACAGCGGTGAGTGGCAGGGGGTTT                              >  1:6734410/1‑35
      ATCTAATCAGCACAGCGGTGAGTGGCAGGGGGTTT                              >  1:2645251/1‑35
       TCTAATCAGCACAGCGGTGAGTGGCAGGGGGTTTT                             >  1:12051689/1‑35
       TCTAATCAGCACAGCGGTGAGTGGCAGGGGGTTTT                             >  1:17712842/1‑35
       TCTAATCAGCACAGCGGTGAGTGGCAGGGGGGTTT                             >  1:10404092/1‑35
        CTAATCAGCACAGCGGTGAGTGGCAGGGGGTTTTT                            >  1:15671262/1‑35
        CTAATCAGCACAGCGGTGAGTGGCAGGGGGTTTTT                            >  1:18360434/1‑35
        CTAATCAGCACAGCGGTGAGTGGCAGGGGGTTTTT                            >  1:4073277/1‑35
        CTAATCAGCACAGCGGTGAGTGGCAGGGGGTTTTT                            >  1:519778/1‑35
        CTAATCAGCACAGCGGTGAGTGGCAGGGGGGTTTc                            >  1:16778402/1‑34
         TAATCAGCACAGCGGTGAGTGGCAGGGGGTTTTca                           >  1:20102563/1‑33
         TAATCAGCACAGCGGTGAGTGGCAGGGGGTTTTTA                           >  1:1249118/1‑35
          AATCAGCACAGCGGTGAGTGGCAGGGGGTTTTTAA                          >  1:11470814/1‑35
           ATCAGCACAGCGGTGAGTGGCAGGGGGTTTTTTAT                         >  1:946725/1‑35
           ATCAGCACAGCGGTGAGTGGCAGGGGGTTTTTAAT                         >  1:8924742/1‑35
            TCAGCACAGCGGTGAGTGGCAGGGGGTTTTTAATT                        >  1:519394/1‑35
             CAGCACAGCGGTGAGTGGCAGGGGGTTTTTAAATT                       >  1:11440828/1‑35
             CAGCACAGCGGTGAGTGGCAGGGGGTTTTCAATTT                       >  1:2226259/1‑35
              AGCACATCGGTGAGTGGCAGGGGGTTTTTAATTTC                      >  1:5549378/1‑35
                 ACAGCGGTGAGTGGCAGGGGGTTTTTAAATTCGCg                   >  1:1277004/1‑34
                                  GGGGTTTTTAATTTCGCCGGTCATATAACAGATAG  >  1:16928432/1‑35
                                  GGGGTTTTTAATTTCGCCGGTCATATAACAGATAG  >  1:8780262/1‑35
                                  GGGGTTTTTAATTTCGCCGGTCATATAACAGATAG  >  1:14709684/1‑35
                                                                     
GCTGGAATCTAATCAGCACAGCGGTGAGTGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1947919‑1947885
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGTTTTTAATTTCGCCGGTCATATAACAGATAG  <  REL606/3428485‑3428452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.