New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 842815 | 109 (1.060) | 4 (0.040) | 3/44 | NT | 4.8% | intergenic (‑93/‑260) | ybiF/ompX | threonine and homoserine efflux system/outer membrane protein X |
? | REL606 | 3607355 = | 58 (0.620) | coding (503/2076 nt) | yhjG | predicted outer membrane biogenesis protein |
AATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/842780‑842815 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAGCCGAAACGACCATGCCGACGGCTTTGCATTCG > REL606/3607355‑3607388 AATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCC < 1:10235099/35‑1 AATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCC > 1:3282799/1‑35 AATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCC > 1:11146807/1‑35 ATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC < 1:686562/35‑1 ATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC < 1:14352475/35‑1 ATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC > 1:10061141/1‑35 TGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCCA < 1:15556376/35‑1 aaAAAAAATTTTCCCCAGCCGAAACGACCATGCCG < 1:4656822/33‑1 AAAAAATTTTCCCCAGCCGAAACGACCATGCCGAC < 1:1645952/35‑1 AAAAATTTTCCCCAGCCGAAACGACCATGCCGACG < 1:6039924/35‑1 taTTCCCCAGCCGAAACGACCATGCCGACGGCTTT < 1:10969573/33‑1 TTTTCCCCAGCCGAAACGACCATGCCGACGGCTTT < 1:9140108/35‑1 TCCCCAGCCGAAACGACCATGCCGACGGCTTTGCA < 1:3195943/35‑1 CCCCAGCCGAAACGACCATGCCGACGGCTTTGCAT < 1:8831100/35‑1 CCCCAGCCGAAACGACCATGCCGACGGCTTTGCAT < 1:6014140/35‑1 CCCCAGCCGAAACGACCATGCCGACGGCTTTGCAT < 1:3606323/35‑1 CCCCACCCGAAACGACCATGCCGACGGCTTTGCAT < 1:5470849/35‑1 CCCAGCCGAAACGACCATGCCGACGGCTTTGCATT < 1:5656022/35‑1 CCCACCCGAAACGACCATGCCGACGGCTTTGCATT < 1:8395603/35‑1 CCAGCCGAAACGACCATGCCGACGGCTTTGCATTC > 1:4512440/1‑35 CCAGCCGAAACGACCATGCCGACGGCTTTGCATTC > 1:15770450/1‑35 CCAGCCGAAACGACCATGCCGACGGCTTTGCATTC < 1:15140136/35‑1 CCAGCCGAAACGACCATGCCGACGGCTTTGCATTC > 1:13378292/1‑35 CCAGCCGAAACGACCATGCCGACGGCTTTGCATTC > 1:12172021/1‑35 CCACCCGAAACGACCATGCCGACGGCTTTGCATTC < 1:4286379/35‑1 CAGCCGAAACGACCATGCCGACGGCTTTGCATTCG > 1:4284881/1‑35 CAGCCGAAACGACCATGCCGACGGCTTTGCATTCG > 1:10730477/1‑35 CAGCCGAAACGACCATGCCGACGGCTTTGCATTCG > 1:5671716/1‑35 CAGCCGAAACGACCATGCCGACGGCTTTGCATTCG < 1:16149704/35‑1 CAGCCGAAACGACCATGCCGACGGCTTTGCATTCG > 1:16024010/1‑35 AATGCTGGTTGAGCATTTGTTGAAAAAATTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/842780‑842815 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAGCCGAAACGACCATGCCGACGGCTTTGCATTCG > REL606/3607355‑3607388 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |