New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 32485 =59 (0.570)7 (0.070) 6/46 NT 12.4% coding (40/822 nt) dapB dihydrodipicolinate reductase
?REL606 = 671859 42 (0.430)coding (1118/1539 nt) lnt apolipoprotein N‑acyltransferase

Only 100 of 121 total aligned reads displayed.

TGATGCAAACATCCGCGTTGCCATCGCGGGAGCCGGGGGGCGTATGGGCCGCCAGTTGATTCAGGCGGC  >  REL606/32451‑32519
                                  |                                  
gcagtaagctcaataccatttaccgacagcggcgg                                    <  1:2130238‑M1/1‑1 (MQ=255)
gcagtaagctcaataccatttaccgacagcggcgg                                    <  1:16832207‑M1/1‑1 (MQ=255)
 gatgCAAACATCCGCGTTGCCATCGCGGGAGCCgg                                   >  1:18819469/1‑35 (MQ=255)
 cagtaagctcaataccatttaccgacagcggcggg                                   <  1:1424975‑M1/2‑1 (MQ=255)
 cagtaagctcaataccatttaccgacagcggcggg                                   <  1:15587864‑M1/2‑1 (MQ=255)
 cagtaagctcaataccatttaccgacagcggcggg                                   <  1:8048419‑M1/2‑1 (MQ=255)
  atgCAAACATCCGCGTTGCCATCGCGGGAGCCggg                                  >  1:8095314/1‑35 (MQ=255)
  agtaagctcaataccatttaccgacagcggcgggg                                  <  1:11484819‑M1/3‑1 (MQ=255)
  agtaagctcaataccatttaccgacagcggcgggg                                  <  1:4410801‑M1/3‑1 (MQ=255)
  agtaagctcaataccatttaccgacagcggcgggg                                  <  1:3347716‑M1/3‑1 (MQ=255)
  agacAACCACCCGCGTTGCCATCGCGGGAGCCggg                                  <  1:52384/32‑1 (MQ=25)
   tgCAAACATCCGCGTTGCCATCGCGGGAGCCgggg                                 >  1:7225418/1‑35 (MQ=255)
   tgCAAACATCCGCGTTGCCATCGCGGGAGCCggcg                                 >  1:67451/1‑33 (MQ=255)
   tacAACCATCCGCGTTGCCATCGCGGGAGCCgggg                                 <  1:1315913/33‑1 (MQ=38)
   gtaagctcaataccatttaccgacagcggcggggg                                 <  1:8172436‑M1/4‑1 (MQ=255)
   gtaagctcaataccatttaccgacagcggcggggg                                 <  1:18056523‑M1/4‑1 (MQ=255)
   gtaagctcaataccatttaccgacagcggcggggg                                 <  1:5808420‑M1/4‑1 (MQ=255)
   gtaagctcaataccatttaccgacagcggcgggcg                                 <  1:1969855‑M1/4‑3 (MQ=255)
    taagctcaataccatttaccgacagcggcgggggg                                <  1:8067245‑M1/5‑1 (MQ=255)
    taagctcaataccatttaccgacagcggcgggggg                                <  1:2596441‑M1/5‑1 (MQ=255)
    taagctcaataccatttaccgacagcggcgggggg                                <  1:15670573‑M1/5‑1 (MQ=255)
    gCAACCATCCGCGTTGCCATCGCGGGAGCCggggg                                <  1:15168392/35‑1 (MQ=255)
    gCAAACATCCGCGTTGCCATCGCGGGAGCCggggg                                >  1:16334886/1‑35 (MQ=255)
    gCAAACATCCGCGTTGCCATCGCGGGAGCCggggg                                <  1:4816227/35‑1 (MQ=255)
    gCAAACATCCGCGTTGCCATCGCGGGAGCCggggg                                >  1:10367469/1‑35 (MQ=255)
    gCAAACATCCGCGTTGCCATCGCGGGAGCCggggg                                >  1:9754424/1‑35 (MQ=255)
    acAAACAGCCGCGTTGCCATCGCGGGAGCCggggg                                <  1:15612498/34‑1 (MQ=255)
     cAAACATCCGCGTTGCCATCGCGGGAGCCgggggg                               >  1:17924007/1‑35 (MQ=255)
     cAAACATCCGCGTTGCCATCGCGGGAGCCgggggg                               >  1:7483662/1‑35 (MQ=255)
     aagctcaataccatttaccgacagcggcggggggg                               <  1:4398186‑M1/6‑1 (MQ=255)
     aagctcaataccatttaccgacagcggcggggggg                               <  1:5144790‑M1/6‑1 (MQ=255)
     aagctcaataccatttaccgacagcggcggggggg                               <  1:12654929‑M1/6‑1 (MQ=255)
      aaccATCCGCGTTGCCATCGCGGGAGCCGGGGGGc                              <  1:6432916/32‑1 (MQ=255)
      aaaCATCCGCGTTGCCATCGCGGGAGCCGGGGGGc                              >  1:8647523/1‑35 (MQ=255)
      aaaCATCCGCGTTGCCATCGCGGGAGCCGGGGGGc                              <  1:13762586/35‑1 (MQ=255)
      aaaCATCCGCGTTGCCATCGCGGGAGCCGGGGGGc                              >  1:13170740/1‑35 (MQ=255)
       gctcaataccatttaccgacagcggcggggggggg                             <  1:8780359‑M1/8‑3 (MQ=255)
       aaCATCCGCGTTGCCATCGCTGGAGCCGGGGGGCg                             >  1:9029780/1‑35 (MQ=255)
       aaCATCCGCGTTGCCATCGCGGGAGCCGGGGGGCg                             >  1:16894603/1‑35 (MQ=255)
       aaCATCCGCGTTGCCATCGCGGGAGCCGGGGGGCg                             >  1:7236801/1‑35 (MQ=255)
        ctcaataccatttaccgacagcggcggggggggtg                            <  1:5856269‑M1/9‑4 (MQ=255)
        ctcaataccatttaccgacagcggcgggggggggt                            <  1:16635157‑M1/9‑4 (MQ=255)
        ctcaataccatttaccgacagcggcgggggggggt                            <  1:11104106‑M1/9‑4 (MQ=255)
        ccATCCGCGTTGCCATCGCGGGAGCCGGGGGGCGt                            <  1:15680645/34‑1 (MQ=255)
        ccATCCGCGTTGCCATCGCGGGAGCCGGGGGGCGt                            <  1:6623652/34‑1 (MQ=255)
        aCATCCGCGTTGCCATCGCGGGAGCCGGGGGGCgc                            >  1:18692983/1‑34 (MQ=255)
        aCATCCGCGTTGCCATCGCGGGAGCCGGGGGGCGt                            >  1:2289307/1‑35 (MQ=255)
         tcaataccatttaccgacagcggcgGGGGGGGGTa                           <  1:1329690‑M1/10‑1 (MQ=255)
         cATCCGCGTTGCCATCGCGGGAGCCGGGGGGCgca                           >  1:856507/1‑33 (MQ=255)
         cATCCGCGTTGCCATCGCGGGAGCCGGGGGGCGTa                           <  1:15842520/35‑1 (MQ=255)
          caataccatttaccgacagcggcgGGGGGGGGTAt                          <  1:16167329‑M1/11‑1 (MQ=255)
          caataccatttaccgacagcggcgGGGGGGGGTAt                          <  1:2312813‑M1/11‑1 (MQ=255)
          aTCCGCGTTGCCATCGCGGGAGCCTGGGGGCGTAt                          >  1:1622364/1‑35 (MQ=255)
          aTCCGCGTTGCCATCGCGGGAGCCGGGGGGCGTAt                          >  1:18043386/1‑35 (MQ=255)
          aTCCGCGTTGCCATCGCGGGAGCCGGGGGGCGTAt                          <  1:10299856/35‑1 (MQ=255)
          aTCCGCGTTGCCATCGCGGGAGCAGGGGGGCGTAt                          <  1:2248058/35‑1 (MQ=255)
           tCCGCGTTGGCATCGCGGGAGCCGGGGGGCGTATg                         <  1:7892981/35‑1 (MQ=255)
           tCCGCGTTGCCATCGCTGGAGCCGGGGGGCGTATg                         >  1:11868952/1‑35 (MQ=255)
           tCCGCGTTGCCATCGCGGGAGCCGGGGGGCGTATg                         <  1:3368031/35‑1 (MQ=255)
            ccGCGTTGCCATCGCGGGAGCCGGGGGGCGTATgg                        <  1:6199585/35‑1 (MQ=255)
            ccGCGTTGCCATCGCGGGAGCCGGGGGGCGTATgg                        <  1:19248039/35‑1 (MQ=255)
             taccatttaccgacagcggcgGGGGGGGGTATggg                       <  1:11745706‑M1/14‑1 (MQ=255)
              gcgTTGCCATCGCGGGAGCCGGGGGGCGTATGGgc                      >  1:20296392/1‑35 (MQ=255)
              accatttaccgacagcggcgGGGGGGGGTATGGgc                      <  1:6016835‑M1/15‑1 (MQ=255)
                gTTGCCATCGCGGGAGCCGGGGGGCGTATGGgccg                    >  1:8046399/1‑35 (MQ=255)
                gTTGCCATCGCGGGAGCCGGGGGGCGTATGGgccg                    >  1:19102997/1‑35 (MQ=255)
                gTTGCCATCGCGGGAGCCGGGGGGCGGATGGgccc                    >  1:10258846/1‑34 (MQ=255)
                catttaccgacagcggcgGGGGGGGGTATGGgccg                    <  1:1327696‑M1/17‑1 (MQ=255)
                 ttGCCATCGCGGGAGCCGGGGGGCGTATGGgccgc                   <  1:14805233/35‑1 (MQ=255)
                 tctccATCGCGGGAGCCGGGGGGCGTATGGgccgc                   <  1:19051788/32‑1 (MQ=255)
                  tGCCATCGCGGGAGCCGGGGGGCGTATGGgccgcc                  >  1:12851715/1‑35 (MQ=255)
                   gCCATCGCGGGAGCCGGGTGGCGTATGGGCCGCCa                 >  1:9719796/1‑35 (MQ=255)
                   gCCATCGCGGGAGCCGGGGGGCGTATGGGCAGCCa                 <  1:2176623/35‑1 (MQ=255)
                    ccATCGCGGGAGCCGGGGGGCGTATGGGCCGCCAg                >  1:2127285/1‑35 (MQ=255)
                    ccATCGCGGGAGCCGGGGGGCGTATGGGCCGCCAg                >  1:14087218/1‑35 (MQ=255)
                     cATCGCGGGAGCCGGGGGGCGTATGGGCCGCCAGt               >  1:363232/1‑35 (MQ=255)
                      aTCGCGGGAGCCGGGGGGCGTATGGGCCGCCAGtt              >  1:10642873/1‑35 (MQ=255)
                      aTCGCGGGAGCCGGGGGGCGTATGGGCCGCCAGtt              >  1:12526984/1‑35 (MQ=255)
                       tCGCGGGAGCTGGGGGGCGTATGGGCCGCCAGTTg             <  1:15209268/35‑1 (MQ=255)
                        ggggggAGCCGGGGGGCGTATGGGCCGCCAGTTGa            <  1:17290863/32‑1 (MQ=255)
                        cgcgGGAGCCGGGGGGCGTATGGGCCGCCAGTTGa            >  1:2143015/1‑35 (MQ=255)
                        cgcgGGAGCCGGGGGGCGTATGGGCCGCCAGTTGa            >  1:9434900/1‑35 (MQ=255)
                        cgcgGGAGCCGGGGGGCGTATGGGCCGCCAGTTGa            >  1:16425290/1‑35 (MQ=255)
                         gcgGGAGCCGGGGGGCGTATGGGCCGCCAGTTGAt           >  1:20536693/1‑35 (MQ=255)
                           gggAGCCGGGTGGCGTATTGGCCGCCAGTTGATTc         >  1:10418404/1‑35 (MQ=37)
                           gggAGCCGGGGGGCGTATGGGCCGCCAGTTGATTc         >  1:14707797/1‑35 (MQ=255)
                            ngAGCCGGGGGGCGTATGGGCCGCCAGTTGATTCn        >  1:6734887/2‑35 (MQ=255)
                            ggAGCCGGGGGGCGTATGGGCCGCCAGTTGATTCa        >  1:17480108/1‑35 (MQ=255)
                             gAGCCGGGGGGCGTATGGGCCGCCAGTTGACTCAg       >  1:12125854/1‑35 (MQ=255)
                              aGCCGGGGGGCGTATGGGCCGCCAGTTGATTCAgg      >  1:14490024/1‑35 (MQ=255)
                               gcgGGGGGGCTTATGGGCCGCCAGTTGATTCAggc     >  1:10769223‑M1/4‑35 (MQ=255)
                               gCCGGGGGGCGTATGGGCCGCCAGTTGATTCAggc     <  1:19517132/35‑1 (MQ=255)
                                cgGGGGGGCGTATGGGCCGCCAGTTGATTCAggcg    >  1:6565032‑M1/3‑35 (MQ=255)
                                ccGGGGGGCGTATGGGCCGCCAGTTGATTCAggcg    >  1:11760540/1‑35 (MQ=255)
                                ccGGGGGGCGTATGGGCCGCCAGTTGATTCAggcg    >  1:9107620/1‑35 (MQ=255)
                                ccGGGGGGCGTATGGGCCGCCAGTTGATTCAggcg    >  1:9294509/1‑35 (MQ=255)
                                ccGGGGGGCGTATGGGCCGCCAGTTGATTCAggcg    >  1:14586937/1‑35 (MQ=255)
                                 cGGGGGGCGTATGGGCCGCCAGTTGATTCAggcgg   >  1:7524550/1‑35 (MQ=255)
                                 cGGGGGGCGTATGGGCCGCCAGTTGATTCAggcgg   >  1:3638250/1‑35 (MQ=255)
                                  GGGGGGCGTATGGGCCGCCAGTTGATTCAggcggc  >  1:12400694‑M1/1‑35 (MQ=255)
                                  |                                  
TGATGCAAACATCCGCGTTGCCATCGCGGGAGCCGGGGGGCGTATGGGCCGCCAGTTGATTCAGGCGGC  >  REL606/32451‑32519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.