New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1830987 =34 (0.330)6 (0.080) 4/36 NT 13.9% coding (221/1359 nt) ydjE predicted transporter
?REL606 = 1996585 49 (0.640)coding (1262/1644 nt) yeeO predicted multidrug efflux system

CCCAAAGTAATCACCGATGAACCCACCGGTAAGAGAGCCGATGAAATAACCAAACATTAATGCCGAGGT  >  REL606/1830953‑1831021
                                  |                                  
tgggtgtaaaacgatgccataaccccggcaaaggg                                    <  1:10585439‑M1/1‑1 (MQ=255)
tgggtgtaaaacgatgccataaccccggcaaaggg                                    >  1:2679925‑M1/35‑35 (MQ=255)
tgggtgtaaaacgatgccataaccccggcaaaggg                                    <  1:14915155‑M1/1‑1 (MQ=255)
cccAAAGTAATCCCCGATGAACCCACCGGTAagag                                    <  1:13898826/35‑1 (MQ=255)
cccAAAGTAATCACCGATGAACCCACCGGTAagag                                    >  1:11330157/1‑35 (MQ=255)
 gggtgtaaaacgatgccataaccccggcaaaggGa                                   <  1:5687446‑M1/2‑1 (MQ=255)
 gggtgtaaaacgatgccataaccccggcaaaggGa                                   <  1:10818660‑M1/2‑1 (MQ=255)
 gggtgtaaaacgatgccataaccccggcaaaggGa                                   >  1:12485819‑M1/34‑35 (MQ=255)
 gggtgtaaaacgatgccataaccccggcaaaggGa                                   >  1:11943329‑M1/34‑35 (MQ=255)
  ggtgtaaaacgatgccataacccctgcaaaggGAg                                  <  1:3786344‑M1/3‑1 (MQ=255)
  ggtgtaaaacgatgccataaccccggcaaaggGAg                                  <  1:16930980‑M1/3‑1 (MQ=255)
  ggtgtaaaacgatgccataaccccggcaaaggGAg                                  <  1:10666178‑M1/3‑1 (MQ=255)
  aaaaATAATCACCGATGAACCCACCGGTAagagag                                  <  1:17214918/34‑1 (MQ=255)
   gtgtaaaccgatgccataaccccggcaaaggGAGc                                 >  1:13475329‑M1/32‑35 (MQ=255)
   gtgtaaaacgatgccataacctcggcaaaggGAGc                                 <  1:9361167‑M1/4‑1 (MQ=255)
   gtgtaaaacgatgccataaccccggcaaaggGAGc                                 <  1:2176140‑M1/4‑1 (MQ=255)
   aaaGTAATCACCGATGAACCCACCGGTAAGAGAGc                                 >  1:19024477/1‑35 (MQ=255)
   aaaGTAATCACCGATGAACCCACCGGTAAGAGAGc                                 >  1:14639138/1‑35 (MQ=255)
   aaaGTAATCACCGATGAACCCACCGGTAAGAGAGc                                 >  1:7165286/1‑35 (MQ=255)
   aaaGTAATCACCGATGAACCCACCGGTAAGAGAGc                                 >  1:19314475/1‑35 (MQ=255)
   aaaGTAATCACCGATGAACCCACCGGTAAGAGAGc                                 >  1:3909011/1‑35 (MQ=255)
   aaaGTAATCACCGATGAACCCACCGGTAAGAGAGc                                 >  1:1214938/1‑35 (MQ=255)
    tgtaaaacgatgccataaccccggcaaaggGAGcc                                >  1:1586854‑M1/31‑35 (MQ=255)
    tgtaaaacgatgccataaccccggcaaaggGAGcc                                >  1:6463181‑M1/31‑35 (MQ=255)
    tgtaaaacgatgccataaccccggcaaaggGAGcc                                >  1:4810066‑M1/31‑35 (MQ=255)
    tgtaaaacgatgccataaccccggcaaaggGAGcc                                <  1:7030298‑M1/5‑1 (MQ=255)
    aaGTAATCACCGATGAACCCACCGGTAAGAGAGcc                                >  1:12278255/1‑35 (MQ=255)
    aaGTAATCACCGATGAACCCACCGGTAAGAGAGcc                                >  1:12411700/1‑35 (MQ=255)
    aaGTAATCACCGATGAACCCACCGGTAAGAGAGcc                                >  1:10508721/1‑35 (MQ=255)
    aaGTAATCACCGATGAACACACCGGTAAGAGAGcc                                <  1:289808/35‑1 (MQ=255)
     aGTAATCACCGATGAACCCACCGGTAAGAGAGCCg                               >  1:17187483/1‑35 (MQ=255)
      taaaacgatgccataaccccggcaaagggagcagt                              >  1:10828241‑M1/29‑32 (MQ=255)
      gTAATCACCGATGAACCCACCGGTAAGAGAGCCGa                              >  1:11738348/1‑35 (MQ=255)
       tAATCACCGATGAACCCACCGGTAAGAGAGCCGAt                             >  1:14566810/1‑35 (MQ=255)
          tCACCGATGAACCCACCGGTAAGAGAGCCGATGaa                          >  1:13846109/1‑35 (MQ=255)
          tCACCGATGAACCCACCGGTAAGAGAGCCGATGaa                          >  1:16021427/1‑35 (MQ=255)
            aCCGATGAACCCACCGGTAAGAGAGCCGATGAAAt                        >  1:765107/1‑35 (MQ=255)
             ccGATGAACCCACCGGTAAGAGAGCCGATGAAATa                       >  1:14400486/1‑35 (MQ=255)
             ccGATGAACCCACCGGTAAGAGAGCCGATGAAATa                       >  1:5410213/1‑35 (MQ=255)
             ccGATGAACCCACCGGTAAGAGAGCCGATGAAATa                       >  1:10675986/1‑35 (MQ=255)
             ccGATGAACCCACCGGTAAGAGAGCCGATGAAATa                       >  1:19133608/1‑35 (MQ=255)
              cGATGAACCCACCGGTAAGAGAGCCGATGAAATaa                      >  1:4995993/1‑35 (MQ=255)
              cGATGAACCCACCGGTAAGAGAGCCGATGAAATaa                      >  1:12258564/1‑35 (MQ=255)
              cGATGAACCCACCGGTAAGAGAGCCGATGAAATaa                      >  1:8218864/1‑35 (MQ=255)
              cGATGAACCCACCGGTAAGAGAGCCGATGAAATaa                      >  1:138817/1‑35 (MQ=255)
               gATGAACCCACCGGTAAGAGAGCCGATGAAATAAc                     >  1:16905086/1‑35 (MQ=255)
               gATGAACCCACCGGTAAGAGAGCCGATGAAATAAc                     >  1:2253700/1‑35 (MQ=255)
               gATGAACCCACCGGTAAGAGAGCCGATGAAATAAc                     >  1:17696755/1‑35 (MQ=255)
               gATGAACCCACCGGTAAGAGAGCCGATGAAATAAc                     >  1:7700529/1‑35 (MQ=255)
                aTGAACCCACCGGTAAGAGAGCCGATGAAATAAcc                    >  1:2205778/1‑35 (MQ=255)
                 tGAACCCACCGGTAAGAGAGCCGATGAAATAACCa                   >  1:3397481/1‑35 (MQ=255)
                 tGAACCCACCGGTAAGAGAGCCGATGAAATAACCa                   >  1:15742387/1‑35 (MQ=255)
                    ccccCCCGGAAAGGGAGCCGATGAAATAACCAAAc                <  1:19754554/34‑1 (MQ=25)
                    aCCCACCGGTAAGAGAGCCGATGAAATAACCAAAc                >  1:11410423/1‑35 (MQ=255)
                     cccccgggaaaggGAGCCGATGAAATAACCAAACa               >  1:2694542‑M1/14‑35 (MQ=255)
                     cccACCGGTAAGAGAGCCGATGAAATAACCAAACa               >  1:12729117/1‑35 (MQ=255)
                      ccccgggaaaggGAGCCGATGAAATAACCAAACAt              >  1:15027576‑M1/13‑35 (MQ=255)
                      ccccgggaaaggGAGCCGATGAAATAACCAAACAt              >  1:6924732‑M1/13‑35 (MQ=255)
                      ccACCGGTAAGAGAGCCGATGAAATAACCAAACAt              >  1:5304183/1‑35 (MQ=255)
                       cccgggaaaggGAGCCGATGAAATAACCAAACAtt             >  1:3944599‑M1/12‑35 (MQ=255)
                        ccgggaaaggGAGCCGATGAAATAACCAAACATTa            >  1:4623321‑M1/11‑35 (MQ=255)
                        aCCGGAAAGGGAGCCGATGAAATAACCAAACATTa            <  1:17572010/35‑1 (MQ=38)
                         ccGGTAAGAGAGCCGATGAAATAACCAAACATTaa           >  1:19509605/1‑35 (MQ=255)
                         ccGGTAAGAGAGCCGATGAAATAACCAAACATTaa           >  1:15861663/1‑35 (MQ=255)
                          gggaaaggGAGCCGATGAAATAACCAAACATTAAt          >  1:12789494‑M1/9‑35 (MQ=255)
                          cGGTAAGAGAGCCGATGAAATAACCAAACATTAAt          >  1:5851541/1‑35 (MQ=255)
                          cGGTAAGAGAGCCGATGAAATAACCAAACATTAAt          >  1:15568593/1‑35 (MQ=255)
                          cGGTAAGAGAGCCGATGAAATAACCAAACATTAAt          >  1:14259001/1‑35 (MQ=255)
                           ggTAAGAGAGCCGATTAAATAACCAAACATTAATg         >  1:17200494/1‑35 (MQ=255)
                           ggTAAGAGAGCCGATGAAATAACCAAACATTAATg         >  1:15109170/1‑35 (MQ=255)
                            gaagggGAGCCGATGAAATAACCAAACATTAATGc        >  1:9581073‑M1/7‑35 (MQ=255)
                            gaagggGAGCCGATGAAATAACCAAACATTAATGc        >  1:13457623‑M1/7‑35 (MQ=255)
                            gTAAGAGAGCCGATGAAATAACCAAACATTAATGc        >  1:17804026/1‑35 (MQ=255)
                             tAAGAGAGCCGATGAAATAACCAAACATTAATGcc       >  1:4909771/1‑35 (MQ=255)
                             tAAGAGAGCCGATGAAATAACCAAACATTAATGcc       >  1:14864981/1‑35 (MQ=255)
                              aaggGAGCCGATGAAATAACCAAACATTAATGCCg      >  1:135099‑M1/5‑35 (MQ=255)
                              aaGAGAGCCGATGAAATAACCAAACATTAATGCCg      >  1:20130113/1‑35 (MQ=255)
                              aaGAGAGCCGATGAAATAACCAAACATTAATGCCg      >  1:6938395/1‑35 (MQ=255)
                              aaGAGAGCCGATGAAATAACCAAACATTAATGCCg      >  1:14359235/1‑35 (MQ=255)
                              aaGAGAGCCGATGAAATAACCAAACATTAATGCCg      >  1:1011218/1‑35 (MQ=255)
                               gggGAGCCGATGAAATAACCAAACATTAATGCCGa     >  1:6340809‑M1/4‑35 (MQ=255)
                                ggGAGCCGATGAAATAACCAAACATTAATGCCGAg    >  1:13517369‑M1/3‑35 (MQ=255)
                                gagagCCGATGAAATAACCAAACATTAATGCCGAg    >  1:17598140/1‑35 (MQ=255)
                                 gGAGCCGATGAAATAACCAAACATTAATGCCGAgg   >  1:6810050‑M1/2‑35 (MQ=255)
                                 agagCCGATGAAATAACCAAACATTAATGCCGAgg   >  1:3599081/1‑35 (MQ=255)
                                  GAGCCGATGAAATAACCAAACATTAATGCCGAGGt  <  1:2685326‑M1/35‑1 (MQ=255)
                                  GAGCCGATGAAATAACCAAACATTAATGCCGAGGt  >  1:10829388‑M1/1‑35 (MQ=255)
                                  |                                  
CCCAAAGTAATCACCGATGAACCCACCGGTAAGAGAGCCGATGAAATAACCAAACATTAATGCCGAGGT  >  REL606/1830953‑1831021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.