New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2327674 =62 (0.600)14 (0.160) 5/42 NT 15.8% coding (383/462 nt) elaA predicted acyltransferase with acyl‑CoA N‑acyltransferase domain
?REL606 = 4527187 95 (1.060)coding (1178/2637 nt) fimD outer membrane usher protein, type 1 fimbrial synthesis

Only 100 of 192 total aligned reads displayed.

GAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTT  >  REL606/4527153‑4527221
                                  |                                  
gaATACCGTAGTGGAAATGCGCAGCAGGAAAAAcc                                    <  1:20025671/35‑1 (MQ=255)
gaATACCGTAGTGGAAATGCGCAGCAGGAAAAAcc                                    <  1:9136580/35‑1 (MQ=255)
gaATACCGTAGTGGAAATGCGCAGCAGGAAAAAcc                                    >  1:16959313/1‑35 (MQ=255)
gaATACCGTAGTGGAAATGCACAGCAGGAAAAAcc                                    <  1:12124197/35‑1 (MQ=255)
  aTACCGTAGTGGAAATGCGCAGCAGGAAAAACCcc                                  <  1:18878891‑M2/35‑3 (MQ=255)
  aTACCGTAGTGGAAATGCGCAGCAGGAAAAACCcc                                  <  1:10946702‑M2/35‑3 (MQ=255)
  aTACCGTAGTGGAAATGCGCAGCAGGAAAAACCcc                                  >  1:11914876‑M2/1‑33 (MQ=255)
  aTACCGTAGTGGAAATGCGCAGCAGGAAAAACCcc                                  >  1:18516651‑M2/1‑33 (MQ=255)
   tACCGTAGTGGAAATGCGCAGCAGGAAAAACCccg                                 >  1:20334063‑M2/1‑32 (MQ=255)
   tACCGTAGTGGAAATGCGCAGCAGGAAAAACCccg                                 >  1:1553653‑M2/1‑32 (MQ=255)
   tACCGTAGTGGAAATGCGCAGCAGGAAAAACCccg                                 >  1:2722963‑M2/1‑32 (MQ=255)
     ccGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCt                               <  1:5652148/35‑1 (MQ=255)
     ccGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCt                               >  1:11771682/1‑35 (MQ=255)
     ccGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCt                               >  1:16892165/1‑35 (MQ=255)
      cGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCtt                              >  1:13624816/1‑35 (MQ=255)
      cGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCtt                              >  1:13057355/1‑35 (MQ=255)
      cGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCtt                              <  1:3810970/35‑1 (MQ=255)
       gTAGTGGAAATGCGCAGCAGGAAAAACCCCGCttt                             <  1:17168835/35‑1 (MQ=255)
       gTAGTGGAAATGCGCAGCAGGAAAAACCCCGCttt                             <  1:13662166/35‑1 (MQ=255)
       gTAGTGGAAATGCGCAGCAGGAAAAACCCCGCttt                             >  1:13826708/1‑35 (MQ=255)
       gTAGTGGAAATGCGCAGCAGGAAAAACCCCGCttt                             >  1:7469901/1‑35 (MQ=255)
       gTAGTGGAAATGCGCAGCAGGAAAAACCCCGCttt                             <  1:5648172/35‑1 (MQ=255)
        tAGTGGAAATGCGCAGCAGGAAAAACCCCGCtttt                            <  1:12368381/35‑1 (MQ=255)
        tAGTGGAAATGCGCAGCAGGAAAAACCCCGCtttt                            <  1:14677084/35‑1 (MQ=255)
        tAGTGGAAATGCGCAGCAGGAAAAACCCCGCtttt                            <  1:3654651/35‑1 (MQ=255)
        tAGTGGAAATGCGCAGCAGGAAAAACCCCGCtttt                            <  1:5140845/35‑1 (MQ=255)
         aGTGGAAATGCGCAGCAGGAAAAACCCCGCttttt                           >  1:364182/1‑35 (MQ=255)
         aGTGGAAATGCGCAGCAGGAAAAACCCCGCttttt                           >  1:3967930/1‑35 (MQ=255)
         aGTGGAAATGCGCAGCAGGAAAAACCCCGCttttt                           >  1:939298/1‑35 (MQ=255)
         aGTGGAAATGCGCAGCAGGAAAAACCCCGCttttt                           <  1:16602563/35‑1 (MQ=255)
          gTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTc                          <  1:17904277/35‑1 (MQ=255)
          gTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTc                          <  1:2958497/35‑1 (MQ=255)
           tGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTcc                         <  1:6809315/35‑1 (MQ=255)
           tGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTcc                         <  1:5292350/35‑1 (MQ=255)
            ggAAATGCGCAGAAGGAAAAACCCCGCTTTTTCCa                        <  1:11604717/35‑1 (MQ=255)
             gAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCag                       >  1:16025203/1‑35 (MQ=255)
              aaaTGCGCAGCAGGAAAAACCCCGCTTTTTCCaga                      >  1:20584976/1‑35 (MQ=255)
              aaaTGCGCAGCAGGAAAAACCCCGCTTTTTCCaga                      >  1:8585917/1‑35 (MQ=255)
              aaaTGCGCAGCAGGAAAAACCCCGCTTTTTCCaga                      <  1:17551977/35‑1 (MQ=255)
              aaaTGCGCAGCAGGAAAAACCCCGCTTTTTCCaga                      <  1:315967/35‑1 (MQ=255)
               aaTGCGCAGCAGGAAAAACCCCGCTTTTTCCagag                     >  1:4526724/1‑35 (MQ=255)
               aaTGCGCAGCAGGAAAAACCCCGCTTTTTCCagag                     >  1:11886060/1‑35 (MQ=255)
               aaTGCGCAGCAGGAAAAACCCCGCTTTTTCCagag                     >  1:12845950/1‑35 (MQ=255)
               aaTGCGCAGCAGGAAAAACCCCGCTTTTTCCagag                     <  1:8737069/35‑1 (MQ=255)
                aTGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGt                    <  1:7705288/35‑1 (MQ=255)
                aTGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGt                    >  1:15988557/1‑35 (MQ=255)
                aTGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGt                    <  1:7984775/35‑1 (MQ=255)
                 tGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTa                   <  1:7294111/35‑1 (MQ=255)
                   cgcAGCAGGAAAAACCCCGCTTTTTCCAGAGTACa                 <  1:3456582/35‑1 (MQ=255)
                   cgcAGCAGGAAAAACCCCGCTTTTTCCAGAGTACa                 <  1:20177054/35‑1 (MQ=255)
                   cgcAGCAGGAAAAACCCCGCTTTTTCCAGAGTACa                 >  1:16572169/1‑35 (MQ=255)
                   cgcAGCAGGAAAAACCCCGCTTTTTCCAGAGTACa                 >  1:16699212/1‑35 (MQ=255)
                    gaagcagAAAATACCCCGCTTTTTCCAGAGTACAt                <  1:8182564/33‑1 (MQ=25)
                     cagcagGAAAAACCCCGCTTTTTCCAGAGTACAtt               >  1:4141503/1‑35 (MQ=255)
                     cagcagGAAAAACCCCGCTTTTTCCAGAGTACAtt               <  1:9187063/35‑1 (MQ=255)
                     cagcagGAAAAACCCCGCTTTTTCCAGAGTACAtt               <  1:2355870/35‑1 (MQ=255)
                     cagcagGAAAAACCCCGCTTTTTCCAGAGTACAtt               >  1:18103839/1‑35 (MQ=255)
                      agcagGCAAAACCCCGCTTTTTCCAGAGTACATTa              >  1:5905100/1‑35 (MQ=255)
                      agcagGAAAAACCCCGCTTTTTCCAGAGTACATTa              <  1:4818638/35‑1 (MQ=255)
                       acaggGAAAACCccgaaactctggtagaagttttg             >  1:18760472‑M2/2‑12 (MQ=255)
                        cagGAAAAACCCCGCTTTTTCCAGAGTACATTACt            >  1:7864898/1‑35 (MQ=255)
                        cagGAAAAACCCCGCTTTTTCCAGAGTACATTACt            <  1:12222608/35‑1 (MQ=255)
                        cagAAAAAACCccgaaactctggtagaagttttgc            >  1:15619384‑M2/1‑11 (MQ=255)
                         agGAAAAACCCCGCTTTTTCCAGAGTACATTACTc           >  1:10731010/1‑35 (MQ=255)
                         agGAAAAACCCCGCTTTTTCCAGAGTACATTACTc           <  1:5133007/35‑1 (MQ=255)
                         agGAAAAACCCCGCTTTTTCCAGAGTACATTACTc           <  1:8264082/35‑1 (MQ=255)
                         agAAAAAACCccgaaactctggtagaagttttgca           >  1:8006457‑M2/1‑10 (MQ=255)
                          ggAAAAACCCCGCTTTTTCCAGAGTACATTACTcc          >  1:9029334/1‑35 (MQ=255)
                          ggAAAAACCCCGCTTTTTCCAGAGTACATTACTcc          <  1:9589632/35‑1 (MQ=255)
                          ggAAAAACCCCGCTTTTTCCAGAGTACATTACTcc          <  1:17830701/35‑1 (MQ=255)
                          ggAAAAACCCCGCTTTTTCCAGAGTACATTACTcc          <  1:20093956/35‑1 (MQ=255)
                           gAAAAACCCCGCTTTTTCCAGAGTACATTACTCCa         >  1:8477188/1‑35 (MQ=255)
                           gAAAAACCCCGCTTTTTCCAGAGTACATTACTCCa         <  1:8430369/35‑1 (MQ=255)
                           gAAAAACCCCGCTTTTTCCAGAGTACATTACTCCa         <  1:1610313/35‑1 (MQ=255)
                           gAAAAACCCCGCTTTTTCCAGAGTACATTACTCCa         >  1:1970064/1‑35 (MQ=255)
                           gAAAAACCCCGCTTTTTCCAGAGTACATTACTCCa         <  1:19490687/35‑1 (MQ=255)
                            aaaaaCCccgaaactctggtagaagttttgcagat        >  1:736841‑M2/1‑7 (MQ=255)
                            aaaaaCCCCGCTTTTTCCAGAGTACATTACTCCAc        <  1:18273799/35‑1 (MQ=255)
                            aaaaaCCCCGCTTTTTCCAGAGTACATTACTCCAc        >  1:5799010/1‑35 (MQ=255)
                            aaaaaCCCCGCTTTTTCCAGAGTACATTACTCCAc        >  1:10395710/1‑35 (MQ=255)
                             aaaaCCCCGCTTTTTCCAGAGTACATTACTCCACg       <  1:16057196/35‑1 (MQ=255)
                             aaaaCCCCGCTTTTTCCAGAGTACATTACTCCACg       <  1:15275895/35‑1 (MQ=255)
                              aaaCCccgaaactctggtagaagttttgcagatgc      >  1:17593421‑M2/1‑5 (MQ=255)
                              aaaCCccgaaactctggtagaagttttgcagatgc      >  1:15020967‑M2/1‑5 (MQ=255)
                               aaCCccgaaactctggtagaagttttgcagatgcg     >  1:5190630‑M2/1‑4 (MQ=255)
                               aaCCCCGCTTTTTCCAGGGTACATTACTCCACGGc     <  1:13738574/35‑1 (MQ=255)
                               aaCCCCGCTTTTTCCAGAGTACATTACTCCACGGc     <  1:7499813/35‑1 (MQ=255)
                               aaCCCCGCTTTTTCCAGAGTACATTACTCCACGGc     >  1:2160719/1‑35 (MQ=255)
                               aaACccgaaactctggtagaagttttgcagatgcg     >  1:20553211‑M2/1‑4 (MQ=255)
                                aCCCCGCTTTTTCCAGAGTACATTACTCCACGGcc    <  1:12001655/35‑1 (MQ=255)
                                aCCCCGCTTTTTCCAGAGTACATTACTCCACGGcc    >  1:10665270/1‑35 (MQ=255)
                                 ccccgaaactctggtagaagttttgcagatgcgcc   >  1:15694487‑M2/1‑2 (MQ=255)
                                 ccccGCTTTTTCCAGAGTACATTACTCCACGGCCt   <  1:13231535/35‑1 (MQ=255)
                                 ccccGCTTTTTCCAGAGTACATTACTCCACGGCCt   >  1:4689696/1‑35 (MQ=255)
                                 acccgaaactctggtagaagttttgcagatgcgcc   >  1:19369526‑M2/2‑2 (MQ=255)
                                  cccgaaactctggtagaagttttgcagatgcgcct  >  1:12327218‑M2/1‑1 (MQ=255)
                                  cccgaaactctggtagaagttttgcagatgcgcct  >  1:3767543‑M2/1‑1 (MQ=255)
                                  cccGCTTTTTCCAGAGTACATTACTCCACGGCCtt  >  1:19052425/1‑35 (MQ=255)
                                  cccGCTTTTTCCAGAGTACATTACTCCACGGCCtt  >  1:643141/1‑35 (MQ=255)
                                  cccGCTTTTTCCAGAGTACATTACTCCACGGCCtt  >  1:1001938/1‑35 (MQ=255)
                                  |                                  
GAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTT  >  REL606/4527153‑4527221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.