New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3704935 | 71 (0.690) | 362 (5.280) | 9/32 | NT | 88.4% | intergenic (+1603/+1) | yibG/yibH | hypothetical protein/hypothetical protein |
? | REL606 | = 3741809 | NA (NA) | noncoding (157/768 nt) | IS1 | repeat region |
Only 100 of 984 total aligned reads displayed.
CAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTG > REL606/3704901‑3704969 | cAAGGAGCAAAGTTCCATAATctcccccctccccc > 1:18883809/1‑35 (MQ=255) aaGGAGCAAAGTTCCATAATCTCccccctccccct > 1:1117963/1‑35 (MQ=255) aGGAGCAAAGTTCCATAATCTCCcccctccccctc < 1:3776247/35‑1 (MQ=255) ggAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCa < 1:8056838/35‑1 (MQ=255) aaaGTTCCATAATCTCCCCCCTCCCCCTCAATGAt > 1:5860907/1‑35 (MQ=255) ttCCATAATCTCCCCCCTCCCCCTCAATGATCCaa > 1:8172940/1‑35 (MQ=255) tCCATAATCTCCCCCCTCCCCCTCAATGATCCaaa > 1:13336989/1‑35 (MQ=255) tCCATAATCTCCCCCCTCCCCCTCAATGATCCaaa < 1:17298608/35‑1 (MQ=255) cATAATCTCCCCCCTCCCCCTCAATGATCCAAATa < 1:34609/35‑1 (MQ=255) tAATCTCCCCCCTCCCCCTCAATGATCCAAATaaa > 1:14704765/1‑35 (MQ=255) aaTCTCCCCCCTCCCCCTCAATGATCCAAATAAAg < 1:2407141/35‑1 (MQ=255) aTCTCCCCCCTCCCCCTCAATGATCCAANTAAANn > 1:7398558/1‑35 (MQ=255) cccccccctcccccccccccccctgccgtaaaaca < 1:16562603‑M1/33‑22 (MQ=255) ccccccctcccccccccccccctgccgtaaaacat < 1:7297093‑M1/34‑23 (MQ=255) cccccccccccccccccccccctgccgtaaaacat < 1:9661754‑M1/34‑23 (MQ=255) ccctctcccccccccccccctgccgtaaaacatgg < 1:6827010‑M1/35‑25 (MQ=255) ccccctcccccccccccccctgccgtaaaacatgg < 1:3174452‑M1/35‑25 (MQ=255) ccccctaccccccccccccctgccgtaaaacatgg < 1:1692899‑M1/35‑25 (MQ=255) cccccccccccccccccccctgccgtaaaacatgg < 1:5249125‑M1/35‑25 (MQ=255) gcccccccccccccccccctgccgtaaaacatggc < 1:10001363‑M1/34‑26 (MQ=255) ccgctcccccccccccccctgccgtaaaacatggc < 1:6232531‑M1/32‑26 (MQ=255) cccctcccccccccccccctgccgtaaaacatggc < 1:18750760‑M1/35‑26 (MQ=255) ccccccccccccccccccctgccgtaaaacatggc < 1:10386703‑M1/35‑26 (MQ=255) ccccccccccccccccccctgccgtaaaacatggc < 1:19402073‑M1/35‑26 (MQ=255) ccccccccccccccccccctgccgtaaaacatggc < 1:2254341‑M1/35‑26 (MQ=255) ccccccccccccccccccctgccgtaaaacatggc < 1:6042285‑M1/35‑26 (MQ=255) ccccccccccccccccccctgccgtaaaacatggc < 1:5023491‑M1/35‑26 (MQ=255) ctctcccccccccccccctgccgtaaaacatggca < 1:4627880‑M1/33‑27 (MQ=255) ccctcccccccccccccctgccgtaaaacatggca < 1:7115115‑M1/35‑27 (MQ=255) ccctcccccccccccccctgccgtaaaacatggca < 1:1246778‑M1/35‑27 (MQ=255) ccctcccccccccccccctgccgtaaaacatggca < 1:8550075‑M1/35‑27 (MQ=255) ccctcccccccccccccctgccgtaaaacatggca < 1:15366799‑M1/35‑27 (MQ=255) ccctcccccccccccccctgccgtaaaacatggca < 1:12060984‑M1/35‑27 (MQ=255) ccctcccccccccccccctgccgtaaaacatggca < 1:7672463‑M1/35‑27 (MQ=255) cccccccccccccccccctgccgtaaaacatggca < 1:13544178‑M1/35‑27 (MQ=255) cccccccccccccccccctgccgtaaaacatggca < 1:18009651‑M1/35‑27 (MQ=255) tctcccccccccccccctgccgtaaaacatggcaa < 1:6992204‑M1/34‑28 (MQ=255) cctctcccccccccccctgccgtaaaacatggcaa < 1:18493825‑M1/35‑28 (MQ=255) cctcccccccccccccctgccgtaaaacatggcaa < 1:5750491‑M1/35‑28 (MQ=255) ccccccccccccccccctgccgtaaaacatggcaa < 1:359024‑M1/32‑28 (MQ=255) ccccccccccccccccctgccgtaaaacatggcaa < 1:15906094‑M1/32‑28 (MQ=255) tccccccccccccccctgccgtaaaacatggcaac < 1:11852865‑M1/33‑29 (MQ=255) ctctcccccccccccctgccgtaaaacatggcaac < 1:15109921‑M1/35‑29 (MQ=255) ctctcccccccccccctgccgtaaaacatggcaac < 1:6541242‑M1/35‑29 (MQ=255) ctcccccccccccccctgccgtaaaacatggcaac < 1:2894279‑M1/35‑29 (MQ=255) ctcccccccccccccctgccgtaaaacatggcaac < 1:15720469‑M1/35‑29 (MQ=255) ctcccccccccccccctgccgtaaaacatggcaac < 1:1256226‑M1/35‑29 (MQ=255) ctcccccccccccccctgccgtaaaacatggcaac < 1:20393904‑M1/35‑29 (MQ=255) ctcccccccccccccctgccgtaaaacatggcaac < 1:19916167‑M1/35‑29 (MQ=255) cccccccccccccccctgccgtaaaacatggcaac < 1:6590272‑M1/33‑29 (MQ=255) tctcccccccccccctgccgtaaaacatggcaact < 1:335415‑M1/32‑30 (MQ=255) tcccccccccccccctgccgtaaaacatggcaact < 1:2059844‑M1/35‑30 (MQ=255) tcccccccccccccctgccgtaaaacatggcaact < 1:13145265‑M1/35‑30 (MQ=255) ccccccccccccccctgccgtaaaacatggcaact < 1:12908969‑M1/34‑30 (MQ=255) ccccccccccccccctgccgtaaaacatggcaact < 1:3976502‑M1/34‑30 (MQ=255) ccccccccccccccctgccgtaaaacatggcaact < 1:14898478‑M1/34‑30 (MQ=255) ccccccccccccccctgccgtaaaacatggcaact < 1:8960645‑M1/34‑30 (MQ=255) ccccccccccccccctgccgtaaaacatggcaact < 1:17730362‑M1/34‑30 (MQ=255) ccccccccccccccctgccgtaaaacatggcaact < 1:3032012‑M1/34‑30 (MQ=255) cccccccccccccctgccgtaaaacatggcaactg < 1:4218192‑M1/35‑31 (MQ=255) cccccccccccccctgccgtaaaacatggcaactg < 1:4805207‑M1/35‑31 (MQ=255) cccccccccccccctgccgtaaaacatggcaactg < 1:9816133‑M1/35‑31 (MQ=255) cccccccccccccctgccgtaaaacatggcaactg < 1:5459269‑M1/35‑31 (MQ=255) cccccccccccccctgccgtaaaacatggcaactg < 1:13955733‑M1/35‑31 (MQ=255) cccccccccccccctgccgtaaaacatggcaactg < 1:19801274‑M1/35‑31 (MQ=255) cccccccccccccctgccgtaaaacatggcaactg < 1:16768607‑M1/35‑31 (MQ=255) cccccccccccccctgccgtaaaacatggcaactg < 1:17097291‑M1/35‑31 (MQ=255) tcccccccccccctgccgtaaaacatggcaactgc < 1:17544241‑M1/34‑32 (MQ=255) cccctcAATGATCCAAATAAAGATAATGCATCCAg < 1:12784771/35‑1 (MQ=255) ccccgcccccccctgccgtaaaacatggcaactgc < 1:1227516‑M1/35‑32 (MQ=255) ccccccccccccctgccgtaaaacatggcaactgc < 1:9340388‑M1/35‑32 (MQ=255) ccccccccccccctgccgtaaaacatggcaactgc < 1:16031849‑M1/35‑32 (MQ=255) ccccccccccccctgccgtaaaacatggcaactgc < 1:7915808‑M1/35‑32 (MQ=255) ccccccccccccctgccgtaaaacatggcaactgc < 1:11043229‑M1/35‑32 (MQ=255) ccccccccccccctgccgtaaaacatggcaactgc < 1:4299801‑M1/35‑32 (MQ=255) ccccccccccccctgccgtaaaacatggcaactgc < 1:19173668‑M1/35‑32 (MQ=255) ccccccccccccctgccgtaaaacatggcaactgc < 1:20193948‑M1/35‑32 (MQ=255) ccccccccccccctgccgtaaaacatggcaactgc < 1:2677979‑M1/35‑32 (MQ=255) cccccaccccccctgccgtaaaacatggcaactgc < 1:873614‑M1/35‑32 (MQ=255) ccctcAATGATCCAAATAAAGATAATGCATCCAGc < 1:10814700/35‑1 (MQ=255) cccccccccccctgccgtaaaacatggcaactgca < 1:9449029‑M1/35‑33 (MQ=255) cccccccccccctgccgtaaaacatggcaactgca < 1:12193846‑M1/35‑33 (MQ=255) cccccccccccctgccgtaaaacatggcaactgca < 1:18149724‑M1/35‑33 (MQ=255) cccccccccccctgccgtaaaacatggcaactgca < 1:19683326‑M1/35‑33 (MQ=255) tcccccccccctgccgtaaaacatggcaactgcag < 1:10646920‑M1/34‑34 (MQ=255) cctcAATGATCCAAATAAAGATAATGCATCCAGCt > 1:10521966/1‑35 (MQ=255) cctcAATGATCCAAATAAAGATAATGCATCCAGCt < 1:1158465/35‑1 (MQ=255) ccccccccccctgccgtaaaacatggcaactgcag < 1:14203583‑M1/35‑34 (MQ=255) ccccccccccctgccgtaaaacatggcaactgcag < 1:13854018‑M1/35‑34 (MQ=255) ccccccccccctgccgtaaaacatggcaactgcag < 1:16244883‑M1/35‑34 (MQ=255) ccccccccccctgccgtaaaacatggcaactgcag < 1:18271243‑M1/35‑34 (MQ=255) ccccccccccctgccgtaaaacatggcaactgcag < 1:4448424‑M1/35‑34 (MQ=255) ccccgccccctgccgtaaaacatggcaactgcagt < 1:10156911‑M1/35‑35 (MQ=255) cccccccccctgccgtaaaacatggcaactgcagt < 1:11398477‑M1/35‑35 (MQ=255) cccccccccctgccgtaaaacatggcaactgcagt < 1:9153800‑M1/35‑35 (MQ=255) cccccccccctgccgtaaaacatggcaactgcagt < 1:6737904‑M1/35‑35 (MQ=255) cccccccccctgccgtaaaacatggcaactgcagt < 1:14378545‑M1/35‑35 (MQ=255) cccccccccctgccgtaaaacatggcaactgcagt < 1:15485915‑M1/35‑35 (MQ=255) cccccccccctgccgtaaaacatggcaactgcagt < 1:16372330‑M1/35‑35 (MQ=255) cccccccccctgccgtaaaacatggcaactgaagt < 1:8295638‑M1/35‑35 (MQ=255) | CAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTG > REL606/3704901‑3704969 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |