New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 197907688 (0.860)10 (0.110) 4/44 NT 14.7% coding (595/636 nt) yedZ hypothetical protein
?REL606 = 2901067 35 (0.370)coding (153/579 nt) ygfJ hypothetical protein

Only 100 of 151 total aligned reads displayed.

AGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATC  >  REL606/1979042‑1979110
                                  |                                  
aGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTA                                    >  1:6783693‑M1/1‑35 (MQ=255)
aGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTA                                    <  1:15906106‑M1/35‑1 (MQ=255)
aGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTA                                    >  1:5621301‑M1/1‑35 (MQ=255)
aGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTA                                    >  1:19211157‑M1/1‑35 (MQ=255)
aGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTA                                    <  1:12702497‑M1/35‑1 (MQ=255)
 gCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTaa                                   <  1:11954411/35‑1 (MQ=255)
  ccTTACGGTATAAGAAGTTGCGTTCCCTTTTTAAc                                  >  1:14408925/1‑35 (MQ=255)
  ccTTACGGTATAAGAAGTTGCGTTCCCTTTTTAAc                                  >  1:1082376/1‑35 (MQ=255)
   cTTACGGTATAAGAAGTTGCGTTCCCTTTTTAAcn                                 <  1:2115646/35‑1 (MQ=255)
   cTTACGGTATAAGAAGTTGCGTTCCCTTTTTAAcc                                 >  1:546853/1‑35 (MQ=255)
   cTTACGGTATAAGAAGTTGCGTTCCCTTTTTAAcc                                 >  1:10061656/1‑35 (MQ=255)
    ttACGGTATAAGAAGTTGCGTTCCCTTTTTAACCg                                <  1:3670515/35‑1 (MQ=255)
    ttACGGTATAAGAAGTTGCGTTCCCTTTTTAACCg                                <  1:4275804/35‑1 (MQ=255)
    ttACGGTATAAGAAGTTGCGTTCCCTTTTTAACCg                                <  1:15319790/35‑1 (MQ=255)
    ttACGGTATAAGAAGTTGCGTTCCCTTTTTAACCg                                >  1:15006355/1‑35 (MQ=255)
    ttACGGTATAAGAAGTTGCGTTCCCTTTTTAACCg                                <  1:14665528/35‑1 (MQ=255)
     tACGGTATAAGAAGTTGCGTTCCCTTTTTAACCgg                               >  1:5276119/1‑35 (MQ=255)
     tACGGTATAAGAAGTTGCGTTCCCTTTTTAACCgg                               <  1:1488091/35‑1 (MQ=255)
      aCGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGt                              <  1:17848827/35‑1 (MQ=255)
      aCGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGt                              <  1:6778060/35‑1 (MQ=255)
       cGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGtt                             <  1:20370622/35‑1 (MQ=255)
       cGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGtt                             <  1:19725905/35‑1 (MQ=255)
       cGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGtt                             <  1:12936171/35‑1 (MQ=255)
        ggTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTa                            >  1:18511216/1‑35 (MQ=255)
        ggTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTa                            <  1:15046152/35‑1 (MQ=255)
         gTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTAc                           <  1:17480984/35‑1 (MQ=255)
         gTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTAc                           >  1:16598136/1‑35 (MQ=255)
         gTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTAc                           >  1:4265827/1‑35 (MQ=255)
         gTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTAc                           <  1:15336239/35‑1 (MQ=255)
         gTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTAc                           <  1:9382583/35‑1 (MQ=255)
          tataAGAAGTTGCGTTCCCTTTTTAACCGGTTACg                          >  1:13508486/1‑35 (MQ=255)
          tataAGAAGTTGCGTTCCCTTTTTAACCGGTTACg                          >  1:19896347/1‑35 (MQ=255)
          tataAGAAGTTGCGTTCCCTTTTTAACCGGTTACg                          >  1:14730615/1‑35 (MQ=255)
           ataAGAAGTTGCGTTCCCTTTTTAACCGGTTACGc                         <  1:17259487/35‑1 (MQ=255)
           ataAGAAGTTGCGTTCCCTTTTTAACCGGTTAAGc                         >  1:8610893/1‑35 (MQ=255)
            taAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCa                        <  1:15249584/35‑1 (MQ=255)
            taAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCa                        >  1:8420180/1‑35 (MQ=255)
            taAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCa                        >  1:16464704/1‑35 (MQ=255)
             aagaagTTGCGTTCCCTTTTTAACCGGTTACGCaa                       >  1:18696696/1‑35 (MQ=255)
             aagaagTTGCGTTCCCTTTTTAACCGGTTACGCaa                       >  1:3217999/1‑35 (MQ=255)
             aagaagTTGCGTTCCCTTTTTAACCGGTTACGCaa                       >  1:7776270/1‑35 (MQ=255)
              agaagTTGCGTTCCCTTTTTAACCGGTTACGCAAg                      <  1:16891409/35‑1 (MQ=255)
              agaagTTGCGTTCCCTTTTTAACAGGTTACGCAAg                      <  1:14909275/35‑1 (MQ=255)
               gaagTTGCGTTCCCTTTTTAACCGGTTACGCAAGc                     <  1:11324243/35‑1 (MQ=255)
                 agTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAg                   <  1:11714189/35‑1 (MQ=255)
                 agTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAg                   >  1:9620507/1‑35 (MQ=255)
                  gTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAgg                  <  1:17609051/35‑1 (MQ=255)
                  gTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAgg                  <  1:14433642/35‑1 (MQ=255)
                  gTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAgg                  <  1:20227164/35‑1 (MQ=255)
                  gTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAgg                  <  1:4460154/35‑1 (MQ=255)
                  gTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAgg                  <  1:2923682/35‑1 (MQ=255)
                   ttGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGt                 <  1:13703013/35‑1 (MQ=255)
                    tGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGtt                <  1:880322/35‑1 (MQ=255)
                    tGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGtt                <  1:13642314/35‑1 (MQ=255)
                    tGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGtt                >  1:10721396/1‑35 (MQ=255)
                    tGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGtt                >  1:4716640/1‑35 (MQ=255)
                    tGCGTTCCCTTTTTAACCGGTTACGCAAGAAggat                >  1:257635/1‑33 (MQ=38)
                     gCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTc               <  1:14104513/35‑1 (MQ=255)
                     gCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTc               >  1:16355389/1‑35 (MQ=255)
                      cGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTca              >  1:8797358/1‑35 (MQ=255)
                      cGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTca              <  1:8480915/35‑1 (MQ=255)
                      cGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTca              <  1:4243119/35‑1 (MQ=255)
                      cGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTca              <  1:18237628/35‑1 (MQ=255)
                       tttcCCTTTTTAgccggtgactaaaataattcggc             <  1:8341456‑M1/34‑24 (MQ=255)
                       gTTCCCTTTTTAACCGGTTACGCAAGCAGGTTcac             <  1:7672758/35‑1 (MQ=255)
                       gTTCCCTTTTTAACCGGTTACGCAAGCAGGTTcac             <  1:13267828/35‑1 (MQ=255)
                       gTTCCCTTTTTAACCGGTTACGCAAGCAGGTTcac             <  1:10094751/35‑1 (MQ=255)
                       gTTCCCTTTTTAACCGGTTACGCAAGCAGGTTcac             >  1:4800114/1‑35 (MQ=255)
                       attcCCTTTTTAgccggtgactaaaataattcggc             <  1:248279‑M1/34‑24 (MQ=255)
                        ttCTCTTTTTAgccggtgactaaaataattcggct            <  1:4204236‑M1/35‑25 (MQ=255)
                        ttCCCTTTTTAgccggtgactaaaataattcggct            <  1:3980888‑M1/35‑25 (MQ=255)
                        ttCCCTTTTTAgccggtgactaaaataattcggct            <  1:6396260‑M1/35‑25 (MQ=255)
                        ttCCCTTTTTAACCGGTTACGCAAGCAGGTTcaca            <  1:12089195/35‑1 (MQ=255)
                         tCCCTTTTTAgccggtgactaaaataattcggcta           <  1:6615575‑M1/35‑26 (MQ=255)
                         tCCCTTTTTAACCGGTTACGCAAGCAGGTTCacaa           >  1:6235290/1‑35 (MQ=255)
                         tCCCTTTTTAACCGGTTACGCAAGCAGGTTCacaa           <  1:11476925/35‑1 (MQ=255)
                          cccTTTTTAgccggtgactaaaataattcggctac          <  1:2459916‑M1/35‑27 (MQ=255)
                          cccTTTTTAgccggtgactaaaataattcggctac          <  1:8996305‑M1/35‑27 (MQ=255)
                          cccTTTTTAACCGGTTACGCAAGCAGGTTCacaac          <  1:781791/35‑1 (MQ=255)
                           ccTTTTTAACCGGTTACGCAAGCAGGTTCacaaca         <  1:11120582/35‑1 (MQ=255)
                            ccttttagccggtgactaaaataattcggctacaa        <  1:12824940‑M1/33‑29 (MQ=255)
                            cTTTTTAgccggtgactaaaataattcggctacaa        <  1:4818637‑M1/35‑29 (MQ=255)
                            cTTTTTAACCGGTTACGCAAGCAGGTTCAcaacaa        >  1:412270/1‑35 (MQ=255)
                            cTTTTTAACCGGTTACGAAAGCAGGTTCAcaacaa        <  1:20022482/35‑1 (MQ=255)
                             tttttAgccggtgactaaaataattcggctacaaa       <  1:1665787‑M1/35‑30 (MQ=255)
                             tttttAgccggtgactaaaataattcggctacaaa       <  1:1111063‑M1/35‑30 (MQ=255)
                             tttttAACCGGTTACGCAAGCAGGTTCACAACaaa       <  1:20224953/35‑1 (MQ=255)
                             tttttAACCGGTTACGCAAGCAGGTTCACAACaaa       >  1:818887/1‑35 (MQ=255)
                              ttttAACCGGTTACGCAAGCAGGTTCACAACAAAt      <  1:7075344/35‑1 (MQ=255)
                              ttttAACCGGTTACGCAAGCAGGTTCAACACAAAt      >  1:5844635/1‑35 (MQ=255)
                              ctttagccggtgactaaaataattcggctacaaaa      <  1:11713726‑M1/34‑31 (MQ=255)
                                ttAACCGGTTACGCAAGCAGGTTCACAACAAATTa    >  1:19286800/1‑35 (MQ=255)
                                 tAgccggtgactaaaataattcggctacaaaactg   <  1:15248742‑M1/35‑34 (MQ=255)
                                 tAACCGGTTACGCAAGCAGGTTCACAACAAATTAt   <  1:8110494/35‑1 (MQ=255)
                                 tAACCGGTTACGCAAGCAGGTTCACAACAAATTAt   <  1:15922605/35‑1 (MQ=255)
                                  agccggtgactaaaataattcggctacaaaactgc  >  1:13941183‑M1/1‑1 (MQ=255)
                                  agccggtgactaaaataattcggctacaaaactgc  >  1:8967712‑M1/1‑1 (MQ=255)
                                  aaCCGGTTACGCAAGCAGGTTCACAACAAATTATc  >  1:12719047/1‑35 (MQ=255)
                                  aaCCGGTTACGCAAGCAGGTTCACAACAAATTATc  <  1:6144649/35‑1 (MQ=255)
                                  aaCCGGTTACGCAAGCAGGTTCACAACAAATTATc  >  1:9407672/1‑35 (MQ=255)
                                  |                                  
AGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATC  >  REL606/1979042‑1979110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.