New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1006225100 (0.970)9 (0.110) 3/38 NT 13.2% intergenic (‑149/+20) asnS/pncB asparaginyl‑tRNA synthetase/nicotinate phosphoribosyltransferase
?REL606 = 4210740 39 (0.480)intergenic (‑178/+75) yjbD/lysC hypothetical protein/aspartate kinase III

Only 100 of 200 total aligned reads displayed.

AAAGATTTCGGAATTAAAGGTAAAAAAAGGGAGCCGATTAGCTCCCTGATGATATTAACTGGCTTTTTT  >  REL606/1006191‑1006259
                                  |                                  
aaaGATTTCGGAATTAAAGGTAAAAAAAGGGAGCC                                    <  1:7177916‑M1/35‑1 (MQ=255)
aaaGATTTCGGAATTAAAGGTAAAAAAAGGGAGCC                                    >  1:14901738‑M1/1‑35 (MQ=255)
 aaGATTTCGGAATTAAAGGTAAAAAAAGGGAGCCg                                   <  1:1408511/35‑1 (MQ=255)
  aGATTTCGGAATTAAAGGTAAAAAAAGGGAGCCGa                                  <  1:2077871/35‑1 (MQ=255)
   gATTTCGGAATTAAAGGTAAAAAAAGGGAGCCGAt                                 >  1:11162677/1‑35 (MQ=255)
    aTTTCGGAATTAAAGGTAAAAAAAGGGAGCCGAtt                                >  1:17833036/1‑35 (MQ=255)
     tttCGGAATTAAAGGTAAAAAAAGGGAGCCGATTa                               <  1:11684322/35‑1 (MQ=255)
     tttCGGAATTAAAGGTAAAAAAAGGGAGCCGATTa                               <  1:12367167/35‑1 (MQ=255)
      ttCGGAATTAAAGGTAAAAAAAGGGAGCCGATTAg                              <  1:9233442/35‑1 (MQ=255)
       tCGGAATTAAAGGTAAAAAAAGGGAGCCGATTAGc                             <  1:18298909/35‑1 (MQ=255)
       tCGGAATTAAAGGTAAAAAAAGGGAGCCGATTAGc                             <  1:13779553/35‑1 (MQ=255)
       tCGGAATTAAAGGTAAAAAAAGGGAGCCGATTAGc                             <  1:8250909/35‑1 (MQ=255)
       tCGGAATTAAAGGTAAAAAAAGGGAGCAGATTAGc                             <  1:15178445/35‑1 (MQ=255)
        cGGAATTAAAGGTAAAAAAAGGGAGCCGATTAGCt                            <  1:18373321/35‑1 (MQ=255)
          gAATTAAAGGTAAAAAAAGGGAGCCGATTAGCTcc                          >  1:10320118/1‑35 (MQ=255)
          gAATTAAAGGTAAAAAAAGGGAGCCGATTAGCTcc                          >  1:10799779/1‑35 (MQ=255)
          gAATTAAAGGTAAAAAAAGGGAGCCGATTAGATcc                          <  1:9034360/35‑1 (MQ=255)
           aaTTAAAGGTAAAAAAAGGGAGCCGATTAGCTccc                         <  1:741775/35‑1 (MQ=255)
           aaTTAAAGGTAAAAAAAGGGAGCCGATTAGCTccc                         <  1:5795030/35‑1 (MQ=255)
           aaTTAAAGGAAAAAAAAGGGAGCCGATTAGCTccc                         <  1:8453619/35‑1 (MQ=255)
             ttAAAGGTAAAAAAAGGGAGCCTATTAGCTCCCtg                       >  1:12206853/1‑35 (MQ=255)
             ttAAAGGTAAAAAAAGGGAGCCGATTAGCTCCCtg                       >  1:3560002/1‑35 (MQ=255)
              tAAAGGTAAAAAAAGGGAGCCGATTAGCTCCCtga                      >  1:2125384/1‑35 (MQ=255)
              tAAAGGTAAAAAAAGGGAGCCGATTAGCTCCCtga                      <  1:15359137/35‑1 (MQ=255)
              tAAAGGTAAAAAAAGGGAGCCGATTAGCTCCCtga                      <  1:4649183/35‑1 (MQ=255)
               naaGGNNAAAAAAGGGAGCCGATTAGCTCCCtgat                     <  1:13590028/34‑1 (MQ=255)
               aaaGGTAAAAAAAGGGAGCCGATTAGCTCCCtgat                     >  1:13979926/1‑35 (MQ=255)
               aaaGGTAAAAAAAGGGAGCCGATTAGCTCCCtgat                     <  1:3275352/35‑1 (MQ=255)
               aaaGGTAAAAAAAGGGAGCCGATTAGCTCCCtgat                     >  1:17150682/1‑35 (MQ=255)
                aaGGTAAAAAAAGGGAGCCGATTAGCTCCCtgatg                    <  1:5937655/35‑1 (MQ=255)
                aaGGTAAAAAAAGGGAGCCGATTAGCTCCCtgatg                    <  1:7206601/35‑1 (MQ=255)
                aaGGTAAAAAAGGGAGCCGATTAGCTCCCtgatga                   <  1:18611519/35‑1 (MQ=38)
                 aGGTAAAAAAAGGGAGCCGATTAGCTCCCtgatga                   >  1:16675363/1‑35 (MQ=255)
                   gTAAAAAAAGGGAGCCGATTAGCTCCCTGATGata                 >  1:5469888/1‑35 (MQ=255)
                   gTAAAAAAAGGGAGCCGATTAGCTCCCTGATGata                 >  1:15255430/1‑35 (MQ=255)
                   gTAAAAAAAGGGAGCCGATTAGCTCCCTGATGata                 >  1:2805920/1‑35 (MQ=255)
                   gTAAAAAAAGGGAGCCGATTAGCTCCCTGATGata                 >  1:1824671/1‑35 (MQ=255)
                    aaaaataagGGAGCCtgtactctgttaaccagcgt                <  1:6616218‑M1/34‑21 (MQ=255)
                     taaaaaagGGAGCCtgtactctgttaaccagcgtc               <  1:3441115‑M1/34‑22 (MQ=255)
                     aaaaaaaGGGAGCCtgtactctgttaaccagcgtc               <  1:8682196‑M1/35‑22 (MQ=255)
                     aaaaaaaGGGAGCCGATTAGCTCCCTGATGATAtt               >  1:5567007/1‑35 (MQ=255)
                     aaaaaaaGGGAGCCGATTAGCTCCCTGATGATAtt               <  1:20220937/35‑1 (MQ=255)
                     aaaaaaaCGGAGCCtgtactctgttaaccagcgtc               <  1:20259961‑M1/35‑22 (MQ=255)
                      aaaaaaGGGAGCCtgtactctgttaaccagcgtct              <  1:1577614‑M1/35‑23 (MQ=255)
                      aaaaaaGGGAGCCGATTAGCTCCCTGATGATATTa              >  1:18052999/1‑35 (MQ=255)
                      aaaaaaGGGAGCCGATTAGCTCCCTGATGATATTa              <  1:693764/35‑1 (MQ=255)
                      aaaaaaGGGAGCCGATTAGCTCCCTGATGATATTa              >  1:12574982/1‑35 (MQ=255)
                      aaaaaaGGGAGCCGATTAGCTCCCTGATGATATTa              >  1:4967198/1‑35 (MQ=255)
                       aaaaaGGGAGCCtgtactctgttaaccagcgtctt             <  1:9575715‑M1/35‑24 (MQ=255)
                       aaaaaGGGAGCCGATTAGCTGCCTGATGATATTaa             <  1:11272989/35‑1 (MQ=255)
                       aaaaaGGGAGCCGATTAGCTCCCTGATGATATTaa             >  1:20509602/1‑35 (MQ=255)
                       aaaaaGGGAGCCGATTAGCTACCTGATGATATTaa             <  1:19655768/35‑1 (MQ=255)
                         aaaGGGAGCCGATTAGCTCCCTGATGATATTAACt           >  1:4776580/1‑35 (MQ=255)
                         aaaGGGAGCCGATTAGCTCCCTGATGATATTAACt           >  1:9628042/1‑35 (MQ=255)
                         aaaGGGAGCCGATTAGCTCCCTGATGATATTAACt           >  1:8143101/1‑35 (MQ=255)
                         aaaCGGAGCCtgtactctgttaaccagcgtcttta           <  1:7975074‑M1/35‑26 (MQ=255)
                          aaGGGAGCCtgtactctgttaaccagcgtctttat          <  1:2476837‑M1/35‑27 (MQ=255)
                          aaGGGAGCCGATTAGCTCCCTGATGATATTAACTg          <  1:17959457/35‑1 (MQ=255)
                          aaGGGAGCCGATTAGCTCCCTGATGATATTAACTg          <  1:15672896/35‑1 (MQ=255)
                          aaGGGAGCCGATTAGCTCCCTGATGATATTAACTg          <  1:710354/35‑1 (MQ=255)
                          aaGGGAGCCGATTAGCTCCCTGATGATATTAACTg          <  1:4059605/35‑1 (MQ=255)
                          aaGGGAGCCGATTAGCTCCCTGATGATATTAACTg          <  1:4093817/35‑1 (MQ=255)
                          aaGGGAGCCGATTAGCTCCCTGATGATATTAACTg          >  1:11442739/1‑35 (MQ=255)
                           acggagCCtgtactctgttaaccagcgtctttatc         <  1:16570588‑M1/33‑28 (MQ=255)
                           aGGGAGCCGATTAGCTCCCTGATGATATTAACTgg         <  1:3717485/35‑1 (MQ=255)
                           aGGGAGCCGATTAGCTCCCTGATGATATTAACTgg         >  1:19572403/1‑35 (MQ=255)
                           aGGGAGCCGATTAGCTCCCTGATGATATTAACTgg         >  1:10255539/1‑35 (MQ=255)
                            gggAGCCtgtactctgttaaccagcgtctttatcg        <  1:3895944‑M1/35‑29 (MQ=255)
                            gggAGCCGATTAGCTCCCTGATGATATTAACTGGc        >  1:347622/1‑35 (MQ=255)
                             ggAGCCGATTAGCTCCCTGATGATATTAACTGGCt       >  1:18847358/1‑35 (MQ=255)
                              gAGCCtgtactctgttaaccagcgtctttatcgga      >  1:6121388‑M1/1‑5 (MQ=255)
                              gAGCCtgtactctgttaaccagcgtctttatcgga      >  1:1339657‑M1/1‑5 (MQ=255)
                              gAGCCtgtactctgttaaccagcgtctttatcgga      <  1:20105244‑M1/35‑31 (MQ=255)
                              gAGCCGATTAGCTCCCTGATGATATTAACTGGCtt      <  1:19737394/35‑1 (MQ=255)
                               aGCCtgtactctgttaaccagcgtctttatcggag     >  1:4288182‑M1/1‑4 (MQ=255)
                               aGCCGATTAGCTCCCTGATGATATTAACTGGCttt     >  1:1000650/1‑35 (MQ=255)
                               aGCCGATTAGCTCCCTGATGATATTAACTGGCttt     <  1:1063032/35‑1 (MQ=255)
                               aGCCGATTAGCTCCCTGATGATATTAACTGGCttt     >  1:9517548/1‑35 (MQ=255)
                               aGCCGATTAGCTCCCTGATGATATTAACTGGCttt     <  1:19783342/35‑1 (MQ=255)
                               aGCCGATTAGCTCCCTGATGATATTAACTGGCttt     <  1:19165934/35‑1 (MQ=255)
                                gCCtgtactctgttaaccagcgtctttatcggaga    <  1:14335411‑M1/35‑33 (MQ=255)
                                gCCGATTAGCTCCCTGATGATATTAACTGGCtttt    <  1:9148499/35‑1 (MQ=255)
                                gCCGATTAGCTCCCTGATGATATTAACTGGCtttt    <  1:6454936/35‑1 (MQ=255)
                                gCCGATTAGCTCCCTGATGATATTAACTGGCtttt    <  1:15751603/35‑1 (MQ=255)
                                gCCGATTAGCTCCCTGATGATATTAACTGGCtttt    <  1:460336/35‑1 (MQ=255)
                                 cctgtactctgttaaccagcgtctttatcggagaa   <  1:9069847‑M1/35‑34 (MQ=255)
                                 ccGATTAGCTCCCTGATTATATTAACTGGCttttt   >  1:5356407/1‑35 (MQ=255)
                                 ccGATTAGCTCCCTGATGATATTAACTGGCttttt   >  1:10949155/1‑35 (MQ=255)
                                 ccGATTAGCTCCCTGATGATATTAACTGGCttttt   >  1:13062684/1‑35 (MQ=255)
                                 ccGATTAGCTCCCTGATGATATTAACTGGCttttt   >  1:17640969/1‑35 (MQ=255)
                                 ccGATTAGCTCCCTGATGATATTAACTGGCttttt   >  1:19361497/1‑35 (MQ=255)
                                  ctgtactctgttaaccagcgtctttatcggagaat  <  1:11310259‑M1/35‑35 (MQ=255)
                                  ctgtactctgttaaccagcgtctttatcggagaat  <  1:6807745‑M1/35‑35 (MQ=255)
                                  ctgtactctgttaaccagcgtctttatcggagaat  <  1:6600453‑M1/35‑35 (MQ=255)
                                  ctgtactctgttaaccagcgtctttatcggagaat  <  1:1988898‑M1/35‑35 (MQ=255)
                                  ctgtactctgttaaccagcgtctttatcggagaat  <  1:4870847‑M1/35‑35 (MQ=255)
                                  cGATTAGCTCCCTGATGATATTAACTGGCtttttt  <  1:1424821/35‑1 (MQ=255)
                                  cGATTAGCTCCCTGATGATATTAACTGGCtttttt  >  1:16375256/1‑35 (MQ=255)
                                  cGATTAGCTCCCTGATGATATTAACTGGCtttttt  >  1:12764970/1‑35 (MQ=255)
                                  cGATTAGCTCCCTGATGATATTAACTGGCtttttt  >  1:2358391/1‑35 (MQ=255)
                                  |                                  
AAAGATTTCGGAATTAAAGGTAAAAAAAGGGAGCCGATTAGCTCCCTGATGATATTAACTGGCTTTTTT  >  REL606/1006191‑1006259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.