New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 304063997 (0.940)17 (0.220) 5/36 NT 21.2% coding (648/810 nt) pppA bifunctional prepilin leader peptidase/ methylase
?REL606 3224905 = 54 (0.700)coding (858/2517 nt) yraJ predicted outer membrane protein

Only 100 of 192 total aligned reads displayed.

CAACGTTGGGCAGTGATAACGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGTAATACATCGCCCATGC  >  REL606/3040605‑3040673
                                  |                                  
cAACGTTGGGCAGTGATAACGCCCCCCCCCAGCCA                                    <  1:8314193‑M1/35‑1 (MQ=255)
   cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt                                 >  1:9676080/1‑35 (MQ=255)
   cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt                                 >  1:10222368/1‑35 (MQ=255)
   cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt                                 <  1:16069012/35‑1 (MQ=255)
   cGTTGGGCAGTGATAACGCCCCCACCCAGCCACCt                                 <  1:11461406/35‑1 (MQ=255)
    gTTGGGCAGTGATAACGCCCCCACCCAGCCACCTa                                >  1:7197895/1‑35 (MQ=255)
    gTTGGGCAGTGATAACGCCCCCACCCAGCCACCTa                                <  1:4477007/35‑1 (MQ=255)
    gTTGGGCAGTGATAACGCCCCCACCCAGCCACCTa                                >  1:16846283/1‑35 (MQ=255)
     ttGGGCAGTGATAACGCCCCCACCCAGCCACCTaa                               <  1:9083449/35‑1 (MQ=255)
      tGGGCAGTGATAACGCCCCCACCCAGCCACCTaaa                              <  1:10657909/35‑1 (MQ=255)
       gggCAGCGATAACGCCCCCACCCAGCCACCTAAAg                             >  1:15038974/1‑35 (MQ=255)
        ggCAGTGATAACGCCCCCACCCAGCCACCTAAAgc                            <  1:4690714/35‑1 (MQ=255)
         ggaGTGATAACCCCCCCACCCAGCCACCTAAAgcg                           <  1:15235889/33‑1 (MQ=38)
         gCAGTGATAACGCCCCCACCCAGCCACCTAAAgcg                           >  1:6836959/1‑35 (MQ=255)
         gCAGTGATAACGCCCCCACCCAGCCACCTAAAgcg                           >  1:14139167/1‑35 (MQ=255)
          cAGTGATAACGCCCCCACCCAGCCACCTAAAgctg                          >  1:10349810/1‑33 (MQ=255)
          cAGTGATAACGCCCCCACCCAGCCACCTAAAgcgg                          >  1:5334558/1‑35 (MQ=255)
          cAGTGATAACGCCCCCACCCAGCCACCTAAAgcgg                          <  1:11916918/35‑1 (MQ=255)
           aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc                         >  1:16583678/1‑35 (MQ=255)
           aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc                         <  1:15138074/35‑1 (MQ=255)
           aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc                         <  1:13513174/35‑1 (MQ=255)
           aGTGATAACGCCCCCACCCAGCCACCTAAAgcggc                         >  1:6279867/1‑35 (MQ=255)
            gTGATAACGCCCCCACCCAGCCACCTAAAgcggcg                        <  1:4102563/35‑1 (MQ=255)
            gTGATAACGCCCCCACCCAGCCACCTAAAgcggcg                        <  1:15690124/35‑1 (MQ=255)
             tGATAGCGCCCCCACCCAGCCACCTAAAGCGGCGa                       <  1:17336780/35‑1 (MQ=255)
             tGATAACGCCCCCACCCAGCCACCTAAAGCGGCGa                       <  1:6094578/35‑1 (MQ=255)
             tGATAACGCCCCCACCCAGCCACCTAAAGCGGCGa                       >  1:18519554/1‑35 (MQ=255)
              gATAACGCCCCCACCCAGCCACCTAAAGCGGCGaa                      <  1:15856065/35‑1 (MQ=255)
               aTAACGCCCCCACCCAGCCACCTAAAGCGGCGAag                     >  1:12649214/1‑35 (MQ=255)
               aTAACGCCCCCACCCAGCCACCTAAAGCGGCGAag                     >  1:14741136/1‑35 (MQ=255)
                tAACGCCCCCACCCAGCCACCTAAAGCGGCGAaga                    <  1:7490137/35‑1 (MQ=255)
                tAACGCCCCCACCCAGCCACCTAAAGCGGCGAaga                    <  1:7748822/35‑1 (MQ=255)
                tAACGCCCCCACCCAGCCACCTAAAGCGGCGAaga                    >  1:20448841/1‑35 (MQ=255)
                tAACGCCCCCACCCAGCCACCTAAAGCGGCGAaga                    <  1:20611712/35‑1 (MQ=255)
                 aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag                   >  1:19771463/1‑35 (MQ=255)
                 aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag                   <  1:4956757/35‑1 (MQ=255)
                 aaCGCCCCCACCCAGCCACCTAAAGCGGCGAagag                   <  1:16305872/35‑1 (MQ=255)
                  ccGCCCACACCCAGCCACCTAAAGCGGCGAAGAGt                  <  1:16348231/34‑1 (MQ=255)
                  acccccccaccCAGCCAgcgcggatttgccccaac                  <  1:14210319‑M1/32‑19 (MQ=255)
                  aCGCCCTCACCCAGCCACCTAAAGCGGCGAAGAGt                  >  1:12905412/1‑35 (MQ=255)
                  aCGCCCCCACCCAGCCACCTAAAGCGGCGAagagc                  >  1:3329835/1‑34 (MQ=255)
                  aCGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGt                  >  1:2371598/1‑35 (MQ=255)
                  aCGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGt                  <  1:8238119/35‑1 (MQ=255)
                   cccccccacCCAGCCAgcgcggatttgccccaacg                 <  1:19648944‑M1/33‑20 (MQ=255)
                   cGCCCCCCCCCAGCCACCTAAAGCGGCGAAGAGTa                 <  1:1861955/35‑1 (MQ=255)
                   cGCCCCCACCCAGACACCTAAAGCGGCGAAGAGTa                 <  1:12001333/35‑1 (MQ=255)
                    gCCCCCACCCAGCCAgcgcggatttgccccaacgg                <  1:10627634‑M1/35‑21 (MQ=255)
                    gCCCCCACCCAGCCAgcgcggatttgccccaacgg                <  1:5717603‑M1/35‑21 (MQ=255)
                    ccccccaCCCAGCCAgcgcggatttgccccaacgg                <  1:3703897‑M1/34‑21 (MQ=255)
                    ccccccaCCCAGCCAgcgcggatttgccccaacgg                <  1:17683028‑M1/34‑21 (MQ=255)
                      ccccCCCCAGCCAgcgcggatttgccccaacggta              <  1:4383169‑M1/35‑23 (MQ=255)
                      ccccACCTAGCCACCTAAAGCGGCGAAGAGTAATa              <  1:17497881/35‑1 (MQ=255)
                      ccccACCCAGCCAgcgcggatttgccccaacggta              <  1:17235531‑M1/35‑23 (MQ=255)
                      ccccACCCAGCCAgcgcggatttgccccaacggta              <  1:5633891‑M1/35‑23 (MQ=255)
                      ccccACCCAGCCACCTAAAGCGGCGAAGAGTAATa              <  1:19048868/35‑1 (MQ=255)
                      ccccACCCAGCCACCTAAAGCGGCGAAGAGTAATa              >  1:13027472/1‑35 (MQ=255)
                       cccacccaGCCAgcgcggatttgccccaacggtac             <  1:2481547‑M1/35‑24 (MQ=255)
                       cccacccaGCCACCTAAAGCGGCGAAGAGTAATAc             <  1:8402506/35‑1 (MQ=255)
                        ccccccagccAgcgcggatttgccccaacggtacg            <  1:579143‑M1/32‑25 (MQ=255)
                        ccacccaGCCACCTAAAGCGGCGAAGAGTAATACa            <  1:2921403/35‑1 (MQ=255)
                        caacccagcCAgcgcggatttgccccaacggtaca            <  1:550927‑M1/33‑25 (MQ=255)
                          acccaGCCAgcgcggatttgccccaacggtacgcg          <  1:19264190‑M1/35‑27 (MQ=255)
                          acccaGCCAgcgcggatttgccccaacggtacgcg          <  1:5540549‑M1/35‑27 (MQ=255)
                          acccaGCCACCTAAAGCGGCGAAGAGTAATACATc          <  1:8618416/35‑1 (MQ=255)
                          acccaGCCACCTAAAGCGGCGAAGAGTAATACATc          <  1:18981037/35‑1 (MQ=255)
                           cccaGCCAgcgcggatttgccccaacggtacgcgg         <  1:7806011‑M1/35‑28 (MQ=255)
                           cccaGCCAgcgcggatttgccccaacggtacgcgg         <  1:17943456‑M1/35‑28 (MQ=255)
                           cccaGCCACCTAAAGCGGCGAAGAGTAATACATCg         >  1:9353955/1‑35 (MQ=255)
                           cccaGCCACCTAAAGCGGCGAAGAGTAATACATCg         >  1:8206056/1‑35 (MQ=255)
                           cccaGCCACCTAAAGCGGCGAAGAGTAATACATCg         <  1:4966643/35‑1 (MQ=255)
                           cccaGCCACCTAAAGCGGCGAAGAGTAATACATCg         <  1:10955903/35‑1 (MQ=255)
                           accagccagcggggatttgccccaacggtacgcgg         <  1:7532043‑M1/34‑28 (MQ=255)
                            ccaGCCACCTAAAGCTGCGAAGAGTAATACATCGc        >  1:19449387/1‑35 (MQ=255)
                            ccaGCCACCTAAAGCGGCGAAGAGTAATACATCGc        >  1:10882918/1‑35 (MQ=255)
                            ccaGCCACCTAAAGCGGCGAAGAGTAATACATCGc        >  1:15996496/1‑35 (MQ=255)
                             caGCCACCTAAAGCGGCGAAGAGTAATACATCGcc       >  1:1374838/1‑35 (MQ=255)
                             caGCCACCTAAAGCGGCGAAGAGTAATACATCGcc       >  1:13915191/1‑35 (MQ=255)
                             caGCCACCTAAAGCGGCGAAGAGTAATACATCGcc       >  1:17729530/1‑35 (MQ=255)
                             caGCCACCTAAAGCGGCGAAGAGTAATACATCGcc       <  1:3786519/35‑1 (MQ=255)
                             caGCCACCTAAAGCGGCGAAGAGTAATACATCGcc       >  1:3742170/1‑35 (MQ=255)
                              agccagcgcggatttgccccaacggtacgcggtat      >  1:12301898‑M1/1‑5 (MQ=255)
                              aGCCACCTAAAGCGGCGAAGAGTAATACATCGccc      <  1:19894162/35‑1 (MQ=255)
                               gccagcgcggatttgccccaacggtacgcggtatc     <  1:11902399‑M1/35‑32 (MQ=255)
                               gCCACCTAAAGCGGCGAAGAGTAATACATCGCCCa     >  1:5907179/1‑35 (MQ=255)
                               gCCACCTAAAGCGGCGAAGAGTAATACATCGCCCa     <  1:15403046/35‑1 (MQ=255)
                                ccagcgcggatttgccccaacggtacgcggtatcg    <  1:3055189‑M1/35‑33 (MQ=255)
                                ccagcgcggatttgccccaacggtacgcggtatcg    <  1:13344123‑M1/35‑33 (MQ=255)
                                ccagcgcggatttgccccaacggtacgcggtatcg    <  1:10100476‑M1/35‑33 (MQ=255)
                                ccACCTAAAGCGGCGAAGAGTAATACATCGCCCAt    <  1:6389696/35‑1 (MQ=255)
                                ccACCTAAAGCGGCGAAGAGTAATACATCGCCCAt    >  1:3512478/1‑35 (MQ=255)
                                ccACCTAAAGCGGCGAAGAGTAATACATCGCCCAt    <  1:12478468/35‑1 (MQ=255)
                                 cagcgcggatttgccccaacggtacgcggtatcgc   >  1:6660442‑M1/1‑2 (MQ=255)
                                 cagcgcggatttgccccaacggtacgcggtatcgc   >  1:864839‑M1/1‑2 (MQ=255)
                                 cagcgcggatttgccccaacggtacgcggtatcgc   >  1:12814112‑M1/1‑2 (MQ=255)
                                 cACCTAAAGCGGCGAAGAGTAATACATCGCCCATg   <  1:18505853/35‑1 (MQ=255)
                                  agcgcggatttgccccaacggtacgcggtatcgca  >  1:6168022‑M1/1‑1 (MQ=255)
                                  agcgcggatttgccccaacggtacgcggtatcgca  >  1:8080059‑M1/1‑1 (MQ=255)
                                  agcgcggatttgccccaacggtacgcggtatcgca  >  1:9875042‑M1/1‑1 (MQ=255)
                                  aCCTAAAGCGGCGAAGAGTAATACATCGCCCATGc  >  1:17048823/1‑35 (MQ=255)
                                  aCCTAAAGCGGCGAAGAGTAATACATAGCCCATGc  <  1:342021/35‑1 (MQ=255)
                                  |                                  
CAACGTTGGGCAGTGATAACGCCCCCACCCAGCCACCTAAAGCGGCGAAGAGTAATACATCGCCCATGC  >  REL606/3040605‑3040673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.