Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,363,338 | C→A | 11.5% | G263G (GGC→GGA) | yjeM → | predicted transporter |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,363,338 | 0 | C→A | 11.5% | 27.2 ‑0.5 ‑0.0 | 154 | G263G (GGC→GGA) | yjeM | predicted transporter |
Reads supporting (aligned to +/- strand): new base (9/9): ref base (58/78): total (67/87) | ||||||||||
Fisher's exact test strand distribution p-value = 6.17e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.58e-01 |
Only 100 of 160 total aligned reads displayed.
CAATCGGTTATTCGCTGGCAATATTTTTATGGGGCGTCAGCACAAACTGGCAGCAGGTATTAAGTAATG > REL606/4363304‑4363372 | cAATCGGTTATTCGCTGGCAATATTTTTTTGGGGc > 1:19012924/1‑35 (MQ=255) cAATCGGTTATTCGCTGGCAATATTTTTATGGGGc < 1:19969693/35‑1 (MQ=255) aaTCGGTTATTCGCTGGCAATATTTTTTTGGGGCg > 1:15103297/1‑35 (MQ=255) atgggTTATTCGCTGGCAATATTTTTATGGGGCGt < 1:14810841/32‑1 (MQ=255) aTCGGTTATTCGCTGGCAATATTTTTATGGGGCGt < 1:9387237/35‑1 (MQ=255) aTCGGTTATTCGCTGGCAATATTTTTATGGGGCGt < 1:20204328/35‑1 (MQ=255) aTCGGTTATTCGCTGGCAATATTTTTATGGGGCGt < 1:19694301/35‑1 (MQ=255) aTCGGTTATTCGCTGGCAATATTTTTATGGGGCGt < 1:5817491/35‑1 (MQ=255) ggTTATTCGCTGGCAATATTTTTATGGGGCGTCAg < 1:14653458/35‑1 (MQ=255) ggTTATTCGCTGGCAATATTTTTATGGGGCGTCAg < 1:13837572/35‑1 (MQ=255) ggTTATTCGCTGGCAATATTTTTATGGGGCGTCAg > 1:1610354/1‑35 (MQ=255) ggTTATTCGCTGGCAATATTTTTATGGGGCGTCAg < 1:320520/35‑1 (MQ=255) gTTATTCGCTGGCAATATTTTTATGGGGCGTCAGc > 1:6600245/1‑35 (MQ=255) gTTATTCGCTGGCAATATTTTTATGGGGCGTCAGc > 1:6870170/1‑35 (MQ=255) gTTATTCGCTGGCAATATTTTTATGGGGCGTCAGc > 1:15161553/1‑35 (MQ=255) gTTATTCGCTGGCAATATTTTTATGGGGCGTCAGc < 1:3608177/35‑1 (MQ=255) gTTATTCGCTGGCAATATTTTTATGGGGAGTCAGc > 1:7054221/1‑35 (MQ=255) ttATTCGCTGGCAATATTTTTATGGGGCGTCAGca > 1:5588952/1‑35 (MQ=255) ttATTCGCTGGCAATATTTTTATGGGGCGTCAGca < 1:16314029/35‑1 (MQ=255) ttATTCGCTGGCAATATTTTTATGGGGCGTCAGca < 1:4699152/35‑1 (MQ=255) ttATTCGCTGGCAATATTTTTATGGGGCGTCAGca < 1:2052341/35‑1 (MQ=255) ttATTCGCTGGCAATATTTTTATGGGGCGTCAGca > 1:14516825/1‑35 (MQ=255) tATTCGCTGGCAATATTTTTATGGGGCGTCAGcac > 1:17527473/1‑35 (MQ=255) tATTCGCTGGCAATATTTTTATGGGGCGTCAGcac > 1:224783/1‑35 (MQ=255) tATTCGCTGGCAATATTTTTATGGGGCGTCAGcac > 1:14007338/1‑35 (MQ=255) tATTCGCTGGCAATATTTTTATGGGGAGTCAGcac > 1:9513626/1‑35 (MQ=255) aTTCGCTGGCAATATTTTTATGGGGCGTCAGcaca < 1:17110336/35‑1 (MQ=255) aTTCGCTGGCAATATTTTTATGGGGCGTCAGcaca > 1:6534436/1‑35 (MQ=255) aTTCGCTGGCAATATTTTTATGGGGCGTCAGcaca > 1:903505/1‑35 (MQ=255) aTTCGCTGGCAATATTTTTATGGGGCGTCAGcaca > 1:1803348/1‑35 (MQ=255) aTTCGCTGGCAATATTTTTATGGGGAGTCAGcaca > 1:11903269/1‑35 (MQ=255) ttCGCTGGCAATATTTTTATGGGGCGTCAGCACaa > 1:10345085/1‑35 (MQ=255) ttCGCTGGCAATATTTTTATGGGGCGTCAGCACaa < 1:3976977/35‑1 (MQ=255) ttCGCTGGCAATATTTTTATGGGGCGTCAGCACaa < 1:1130194/35‑1 (MQ=255) tCGCTGGCAATATTTTTATGGGGCGTCAGCACaaa < 1:18443146/35‑1 (MQ=255) tCGCTGGCAATATTTTTATGGGGCGTCAGCACaaa < 1:4185408/35‑1 (MQ=255) tCGCTGGCAATATTTTTATGGGGCGTCAGCACaaa < 1:8731119/35‑1 (MQ=255) cGCTGGCAATATTTTTATGGGGCGTCAGCACAAAc < 1:15796889/35‑1 (MQ=255) cGCTGGCAATATTTTTATGGGGCGTCAGCACAAAc < 1:19162781/35‑1 (MQ=255) cGCTGGCAATATTTTTATGGGGCGTCAGCACAAAc < 1:16510174/35‑1 (MQ=255) gCTGGCAATATTTTTATGGGGCGTCAGCACAAACt > 1:16408615/1‑35 (MQ=255) gCTGGCAATATTTTTATGGGGAGTCAGCACAAACt < 1:6310903/35‑1 (MQ=255) cTGGCAATATTTTTATGGGGCGTCAGCACAAACTg < 1:3763709/35‑1 (MQ=255) cTGGCAATATTTTTATGGGGCGTCAGCACAAACTg > 1:14985250/1‑35 (MQ=255) cTGGCAATATTTTTATGGGGCGTCAGCACAAACTg > 1:601485/1‑35 (MQ=255) tGGCAATATTTTTATGGGGCGTCAGCACAAACTgg < 1:15512232/35‑1 (MQ=255) ggCAATATTTTTATGGGGCGTCAGCACAAACTGgc > 1:18203394/1‑35 (MQ=255) ggCAATATTTTTATGGGGAGTCAGCACAAACTGgc > 1:10231799/1‑35 (MQ=255) gCAATATTTTTATGGGGCGTCAGCACAAACTGgca > 1:12202863/1‑35 (MQ=255) gCAATATTTTTATGGGGAGTCAGCACAAACTGgca > 1:13664215/1‑35 (MQ=255) cAATATTTTTATGGGGAGTCAGCACAAACTGgcag < 1:7921532/35‑1 (MQ=255) aaTATTTTTATGGGGCGTCAGCACAAACTGgcagc > 1:4582657/1‑35 (MQ=255) aaTATTTTTATGGGGCGTCAGCACAAACTGgcagc > 1:11081077/1‑35 (MQ=255) atatTTTTATGGGGCGTCAGCACAAACTGgcagca < 1:19996537/35‑1 (MQ=255) atatTTTTATGGGGCGTCAGCACAAACTGgcagca > 1:13364469/1‑35 (MQ=255) atatTTTTATGGGGAGTCAGCACAAACTGgcagca < 1:4097541/35‑1 (MQ=255) atatTTTTATGGGGAGTCAGCACAAACTGgcagca < 1:10414160/35‑1 (MQ=255) tatTTTTATGGGGCGTCAGCACAAACTGGcagcag > 1:17067423/1‑35 (MQ=255) tatTTTTATGGGGAGTCAGCACAAACTGGcagcag < 1:7470616/35‑1 (MQ=255) atTTTTATGGGGCGTCAGCACAAACTGGCAGCAgg > 1:11277145/1‑35 (MQ=255) atTTTTATGGGGCGTCAGCACAAACTGGCAGCAgg > 1:9036647/1‑35 (MQ=255) atTTTTATGGGGCGTCAGCACAAACTGGCAGCAgg < 1:1276015/35‑1 (MQ=255) atTTTTATGGGGCGTCAGCACAAACTGGCAGCAgg < 1:8100326/35‑1 (MQ=255) tttttATGGGGCGTCAGCACAAACTGGCAGCAggg > 1:10072186/1‑34 (MQ=255) tttttATGGGGCGTCAGCACAAACTGGCAGCAGGt < 1:9821566/35‑1 (MQ=255) tttttATGGGGCGTCAGCACAAACTGGCAGCAGGt < 1:9155700/35‑1 (MQ=255) tttttATGGGGCGTCAGCACAAACTGGCAGCAGGt > 1:20218677/1‑35 (MQ=255) tttttATGGGGCGTCAGCACAAACTGGCAGCAGGt < 1:19679213/35‑1 (MQ=255) tttttATGGGGCGTCAGCACAAACTGGCAGCAGGt < 1:6064400/35‑1 (MQ=255) tttttATGGGGCGTCAGCACAAACTGGAAGCAGGt < 1:9471143/35‑1 (MQ=255) ttttATGGGGCGTCAGCACAAACTGGCAGCAGGTa < 1:10159370/35‑1 (MQ=255) ttttATGGGGCGTCAGCACAAACTGGCAGCAGGTa < 1:16587156/35‑1 (MQ=255) ttttATGGGGCGTCAGCACAAACTGGCAGCAGGTa > 1:17931514/1‑35 (MQ=255) tttATGGGGCGTCAGCACAAACTGGCAGCAGGGAt > 1:2561296/1‑35 (MQ=255) ttATGGGGCGTCAGCACAAACTGGCAGCAGGTAtt < 1:12366246/35‑1 (MQ=255) ttATGGGGCGTCAGCACAAACTGGCAGCAGGTAtt < 1:13232446/35‑1 (MQ=255) tATGGGGCGTCAGCACAAACTGGCAGGAGGGATTa > 1:16691506/1‑35 (MQ=37) tATGGGGCGTCAGCACAAACTGGCAGCAGGTATTa > 1:4384097/1‑35 (MQ=255) tATGGGGCGTCAGCACAAACTGGCAGCAGGTATTa > 1:4972372/1‑35 (MQ=255) tATGGGGCGTCAGCACAAACTGGCAGCAGGTATTa < 1:9414123/35‑1 (MQ=255) tATGGGGAGTCAGCACAAACTGGCAGCAGGGAttt > 1:20292696/1‑34 (MQ=25) aTGGGGCGTCAGCACAAACTGGCAGCAGGTATTaa < 1:18010610/35‑1 (MQ=255) aTGGGGCGTCAGCACAAACTGGCAGCAGGTATTaa < 1:19672229/35‑1 (MQ=255) aTGGGGCGTCAGCACAAACTGGCAGCAGGTATTaa > 1:10817427/1‑35 (MQ=255) aTGGGGAGTCAGCACAAACTGGCAGCAGGTATTaa < 1:8314285/35‑1 (MQ=255) aTGGGGAGTCAGCACAAACTGGCAGCAGGGATTaa > 1:15737313/1‑35 (MQ=25) tGGGGCGTCAGCACAAACTGGCAGCAGGTATTAAg < 1:20539144/35‑1 (MQ=255) tGGGGCGTCAGCACAAACTGGCAGCAGGGATTAAg > 1:12581834/1‑35 (MQ=255) ggggCGTCAGCACAAACTGGCAGCAGGTATTAAGt < 1:1245035/35‑1 (MQ=255) ggggCGTCAGCACAAACTGGCAGCAGGTATTAAGt < 1:13734546/35‑1 (MQ=255) ggggCGTCAGCACAAACTGGCAGCAGGTATTAAGt > 1:16624762/1‑35 (MQ=255) gggCGTCAGCACAAACTGGCAGCAGGTATTAAGTa > 1:1614201/1‑35 (MQ=255) gggCGTCAGCACAAACTGGCAGCAGGTATTAAGTa > 1:17090510/1‑35 (MQ=255) gggCGTCAGCACAAACTGGCAGCAGGTATTAAGTa < 1:2065955/35‑1 (MQ=255) gggCGTCAGCACAAACTGGCAGCAGGGATTAAGTa > 1:14159096/1‑35 (MQ=255) ggCGTCAGCACAAACTGGCAGCATGTATTAAGTaa > 1:8586556/1‑35 (MQ=255) ggCGTCAGCACAAACTGGCAGCAGGTATTAAGTaa < 1:18331901/35‑1 (MQ=255) ggCGTCAGCACAAACTGGCAGCAGGTATTAAGTaa > 1:3248842/1‑35 (MQ=255) gCGTCAGCACAAACTGGCAGCAGGTATTAAGTAAt < 1:4946584/35‑1 (MQ=255) cGTCAGCACAAACTGGCAGCAGGTATTAAGTAATg < 1:15849370/35‑1 (MQ=255) | CAATCGGTTATTCGCTGGCAATATTTTTATGGGGCGTCAGCACAAACTGGCAGCAGGTATTAAGTAATG > REL606/4363304‑4363372 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |