New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2650606 =NA (NA)12 (0.190) 3/30 NT 17.1% noncoding (72/2906 nt) rrlG 23S ribosomal RNA
?REL606 = 2867475 93 (0.910)coding (1008/1194 nt) ygeD predicted inner membrane protein

Only 100 of 363 total aligned reads displayed.

GTCAGAGGCGATGAAGGACGTGCTAATCTGCGATaagcgtcgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2650639‑2650606
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCGTCGGGGCGGGGAATGCGATTGCAGTACAAAACCTTGGC  <  REL606/2867475‑2867433
                                                                             
GTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA                                            <  1:1552739/35‑1
GTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA                                            <  1:17758519/35‑1
GTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA                                            <  1:18007660/35‑1
GTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA                                            <  1:18588884/35‑1
GTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA                                            <  1:6365762/35‑1
GTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA                                            <  1:19664955/35‑1
GTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA                                            <  1:12412533/35‑1
 TCAGAGGCGATGAAGGACGTGCTAATCTGCGATAA                                           <  1:7263415/35‑1
 TCAGAGGCGATGAAGGACGTGCTAATCTGCGATAA                                           <  1:7081120/35‑1
 TCAGAGGCGATGAAGGACGTGCTAATCTGCGATAA                                           <  1:20296757/35‑1
 TCAGAGGCGATGAAGGACGTGCTAATCTGCGATAA                                           <  1:13114233/35‑1
 TCAGAGGCGATGAAGGACGTGCTAATCTGCGATAA                                           <  1:371006/35‑1
  CAGAGGCGATGAAGGACGTGCTAATCTGCGATAAG                                          <  1:16261097/35‑1
  CAGAGGCGATGAAGGACGTGCTAATCTGCGATAAG                                          <  1:13659976/35‑1
  CAGAGGCGATGAAGGACGTGCTAATCTGCGATAAG                                          <  1:9777213/35‑1
  CAGAGGCGATGAAGGACGTGCTAATCTGCGATAAG                                          <  1:9050508/35‑1
  CAGAGGCGATGAAGGACGTGCTAATCTGCGATAAG                                          >  1:794899/1‑35
  CAGAGGCGATGAAGGACGTGCTAATCTGCGATAAG                                          <  1:11912873/35‑1
  CAGAGGCGATGAAGGACGTGCTAATCTGCGATAAG                                          <  1:11642172/35‑1
   AGAGGCGATGAAGGACGTGCTAATCTGCGATAAGC                                         <  1:8378400/35‑1
   AGAGGCGATGAAGGACGTGCTAATCTGCGATAAGC                                         <  1:4940838/35‑1
   AGAGGCGATGAAGGACGTGCTAATCTGCGATAAGC                                         <  1:19730303/35‑1
   AGAGGCGATGAAGGACGTGCTAATCTGCGATAAGC                                         <  1:13775973/35‑1
   AGAGGCGATGAAGGACGTGCTAATCTGCGATAAGC                                         <  1:4258613/35‑1
    GAGGCGATGAAGGACGTGCTAATCTGCGATAATCG                                        >  1:18174351/1‑35
    GAGGCGATGAAGGACGTGCTAATCTGCGATAAGCG                                        <  1:19975399/35‑1
    GAGGCGATGAAGGACGTGCTAATCTGCGATAAGCG                                        >  1:4691862/1‑35
    GAGGCGATGAAGGACGTGCTAATCTGCGATAAGCG                                        <  1:20566492/35‑1
    GAGGCGATGAAGGACGTGCTAATCTGCGATAAGCG                                        <  1:1826025/35‑1
    GAGGCGATGAAGGACGTGCTAATCTGCGATAAGCG                                        <  1:2356533/35‑1
    GAGGCGATGAAGGACGTGCTAATCTGCGATAAGCG                                        >  1:9399589/1‑35
    GAGGCGATGAAGGACGTGCTAATCTGCGATAAGCG                                        <  1:3875202/35‑1
    GAGGCGATGAAGGACGTGCTAATCTGCGATAAGCG                                        <  1:103095/35‑1
    GAGGCGATGAAGGACGTGCTAATCTGCGATAAGCG                                        <  1:1117821/35‑1
     AGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT                                       >  1:20403234/1‑35
     AGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT                                       <  1:12996827/35‑1
     AGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT                                       >  1:12830772/1‑35
     AGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT                                       <  1:13872144/35‑1
     AGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT                                       <  1:19239002/35‑1
     AGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT                                       >  1:2954650/1‑35
     AGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT                                       <  1:4565994/35‑1
     AGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT                                       <  1:5841658/35‑1
     AGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT                                       >  1:5983831/1‑35
     AGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT                                       <  1:7755640/35‑1
     AGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT                                       <  1:8894349/35‑1
     AGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT                                       <  1:15884361/35‑1
     AGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT                                       >  1:16533362/1‑35
      gaCGATGAAGGACGTGCTAATCTGCGATAAGCGTC                                      <  1:6215362/33‑1
      GGCGATGAAGGACGTGCTAATCTGCGATAAGCGTC                                      >  1:8779448/1‑35
      GGCGATGAAGGACGTGCTAATCTGCGATAAGCGTC                                      <  1:13525907/35‑1
      GGCGATGAAGGACGTGCTAATCTGCGATAAGCGTC                                      <  1:14987253/35‑1
       GCGATGAAGGACTTGCTAATCTGCGATAAGCGTCG                                     <  1:2748293/35‑1
       GCGATGAAGGACGTGCTAATCTGCGATAAGCGTCG                                     <  1:9612169/35‑1
       GCGATGAAGGACGTGCTAATCTGCGATAAGCGTCG                                     >  1:15791069/1‑35
       GCGATGAAGGACGTGCTAATCTGCGATAAGCGTCG                                     >  1:14008505/1‑35
       GCGATGAAGGACGTGCTAATCTGCGATAAGCGTCG                                     <  1:11991905/35‑1
       GCGATGAAGGACGTGCTAATCTGCGATAAGCGTCG                                     >  1:14572487/1‑35
       GCGATGAAGGACGTGCTAATCTGCGATAAGCGTCG                                     >  1:11278302/1‑35
       GCGATGAAGGACGTGCTAATCTGCGATAAGCGTCG                                     >  1:7377476/1‑35
        CGATGAAGGACGTGCTAATCTGCGATAAGCGTCtg                                    >  1:9144504/1‑33
        CGATGAAGGACGTGCTAATCTGCGATAAGCGTCGG                                    <  1:3616070/35‑1
        CGATGAAGGACGTGCTAATCTGCGATAAGCGTCGG                                    >  1:10102007/1‑35
        CGATGAAGGACGTGCTAATCTGCGATAAGCGTCGG                                    >  1:16985645/1‑35
        CGATGAAGGACGTGCTAATCTGCGATAAGCGTCGG                                    <  1:20254299/35‑1
        CGATGAAGGACGTGCTAATCTGCGATAAGCGTCGG                                    >  1:15308215/1‑35
        CGATGAAGGACGTGCTAATCTGCGATAAGCGTCGG                                    <  1:14066070/35‑1
        CGATGAAGGACGTGCTAATCTGCGATAAGCGTCGG                                    <  1:14720972/35‑1
        CGATGAAGGACGTGCTAATCTGCGATAAGCGTCGG                                    >  1:1612883/1‑35
         GATGAAGGACGTGCTAATCTGCGATAAGCGTCGGa                                   >  1:9584369/1‑34
         GATGAAGGACGTGCTAATCTGCGATAAGCGTCGGG                                   >  1:17128849/1‑35
         GATGAAGGACGTGCTAATCTGCGATAAGCGTCGGG                                   >  1:10455342/1‑35
         GATGAAGGACGTGCTAATCTGCGATAAGCGTCGGG                                   >  1:16723042/1‑35
         GATGAAGGACGTGCTAATCTGCGATAAGCGTCGGG                                   >  1:11448400/1‑35
         GATGAAGGACGTGCTAATCTGCGATAAGCGTCGGG                                   >  1:15105867/1‑35
         GATGAAGGACGTGCTAATCTGCGATAAGCGTCGGG                                   >  1:3355192/1‑35
          ATGAATGACGTGCTAATCTGCGATAAGCGTCGGGa                                  >  1:6869580/1‑34
          ATGAAGGACGTGCTAATCTGCGATAAGCGTCGGGa                                  >  1:5226757/1‑34
          ATGAAGGACGTGCTAATCTGCGATAAGCGTCGGGa                                  >  1:14828622/1‑34
          ATGAAGGACGTGCTAATCTGCGATAAGCGTCGGGG                                  >  1:12305420/1‑35
          ATGAAGGACGTGCTAATCTGCGATAAGCGTCGGGG                                  >  1:13278958/1‑35
           TGAAGGACGTGCTAATCTGCGATAAGCGTCGGcta                                 >  1:5462181/1‑32
           TGAAGGACGTGCTAATCTGCGATAAGCGTCGGGaa                                 >  1:18998605/1‑33
           TGAAGGACGTGCTAATCTGCGATAAGCGTCGGGaa                                 >  1:8152588/1‑33
           TGAAGGACGTGCTAATCTGCGATAAGCGTCGGGGg                                 >  1:14317309/1‑34
           TGAAGGACGTGCTAATCTGCGATAAGCGTCGGGGg                                 >  1:12574822/1‑34
            GAAGGACGTGCTAATCTGCGATAAGCGTCGGGaag                                >  1:10067482/1‑32
             AAGGACGTGCTAATCTGCGATAAGCGTCGGGGAGG                               >  1:2230661/1‑35
               GGACGTGCTAATCTGCGATAAGCGTCGGGGGGGGG                             >  1:17329662/1‑35
               GGACGTGCTAATCTGCGATAAGCGTCGGGGGGGGG                             >  1:16006029/1‑35
                                  AAGCGTCGGGGCGGGGAATGCGATTGCAGTACAAA          >  1:17819860/1‑35
                                   AGCGTCGGGGCGGGGAATGCGATTGCAGTACAAAA         <  1:6548258/35‑1
                                    GCGTCGGGGCGGGGAATGCGATTGCAGTACAAAAC        <  1:16594285/35‑1
                                    GCGTCGGGGCGGGGAATGCGATTGCAGTACAAAAC        <  1:12179489/35‑1
                                     CGTCGGGGCGGGGAATGCGATTGCAGTACAAAACC       <  1:10990655/35‑1
                                      GTCGGGGCGGGGAATGCGATTGCAGTACAAAACCT      <  1:17572778/35‑1
                                      GTCGGGGCGGGGAATGCGATTGCAGTACAAAACCT      <  1:19442405/35‑1
                                      GTCGGGGCGGGGAATGCGATTGCAGTAAAAAACCT      >  1:18350187/1‑35
                                         GGGGCGGGGAATGCGATTGCAGTACAAAATCTTGG   <  1:669354/35‑1
                                         GGGGCGGGGAATGCGATTGCAGTACAAAACCTTGG   <  1:5773905/35‑1
                                          GGGCGGGGAATGCGATTGCAGTACAAAACCTTGGC  <  1:10833104/35‑1
                                                                             
GTCAGAGGCGATGAAGGACGTGCTAATCTGCGATaagcgtcgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2650639‑2650606
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCGTCGGGGCGGGGAATGCGATTGCAGTACAAAACCTTGGC  <  REL606/2867475‑2867433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.