New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 245448167 (0.650)14 (0.140) 6/46 NT 15.1% coding (158/342 nt) ECB_02307 conserved hypothetical protein
?REL606 = 4471806 97 (0.940)coding (1485/1503 nt) yjgR predicted ATPase

AACAAATTAAAGAGATTGTAGACACTAGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2454448‑2454481
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGGGAGAAGAAG  <  REL606/4471806‑4471792
                                  |               
AACAAATTAAAGAGATTGTAGACACTAGCGGCAGG                 >  1:18153197/1‑35
 ACAAATTAAAGAGATTGTAGACACTAGCGGCAGGG                >  1:14720496/1‑35
 ACAAATTAAAGAGATTGTAGACACTAGCGGCAGGG                >  1:4599232/1‑35
  CAAATTAAAGAGATTGTAGACACTAGCGGGAGGGG               >  1:4519857/1‑35
   AAATTAAAGAGATTGTAGACACTAGCGGCAGGGGc              >  1:19682972/1‑34
   AAATTAAAGAGATTGTAGACACTAGCGGCAGGGGG              >  1:13578383/1‑35
   AAATTAAAGAGATTGTAGACACTAGCGGCAGGGGG              >  1:16034747/1‑35
   AAATTAAAGAGATTGTAGACACTAGCGGCAGGGGG              >  1:8705271/1‑35
   AAATTAAAGAGATTGTAGACACTAGCGGCAGGGGG              >  1:18043660/1‑35
   AAATTAAAGAGATTGTAGACACTAGCGGCAGGGGG              >  1:8246476/1‑35
    AATTAAAGAGATTGTAGACACTAGCGGCAGGGGGG             >  1:4758890/1‑35
    AATTAAAGAGATTGTAGACACTAGCGGCAGGGGGG             >  1:6482195/1‑35
     ATTAAAGAGATTGTAGACACTAGCGGCAGGGGGGG            >  1:3149231/1‑35
     ATTAAAGAGATTGTAGACACTAGCGGCAGGGGGGG            >  1:20032867/1‑35
     ATTAAAGAGATTGTAGACACTAGCGGCAGGGGGGG            >  1:18500721/1‑35
     ATTAAAGAGATTGTAGACACTAGCGGCAGGGGGGG            >  1:15835661/1‑35
     ATTAAAGAGATTGTAGACACTAGCGGCAGGGGGGG            >  1:12652978/1‑35
      TTAAAGAGATTGTAGACACTAGCGGCAGGGGGGGG           >  1:4349664/1‑35
        AAAGAGATTGTAGACACTAGCGGCAGGGGGGGagg         >  1:15451741/1‑32
        AAAGAGATTGTAGACACTAGCGGCAGGGGGGGGGg         >  1:17463084/1‑34
        AAAGAGATTGTAGACACTAGCGGCAGGGGGGGGGg         >  1:406835/1‑34
        AAAGAGATTGTAGACACTAGCGGCAGGGGGGGGGA         >  1:8733079/1‑35
         AAGAGATTGTAGACACTAGCGGCAGGGGGGGGGgg        >  1:14770063/1‑33
         AAGAGATTGTAGACACTAGCGGCAGGGGGGGGGAG        >  1:373731/1‑35
          AGAGATTGTAGACACTAGCGGCAGGGGGGGGGggg       >  1:1797968/1‑32
          AGAGATTGTAGACACTAGCGGCAGGGGGGGGGgac       >  1:6810944/1‑32
          AGAGATTGTAGACACTAGCGGCAGGGGGGGGGGGA       >  1:5486306/1‑35
          AGAGATTGTAGACACTAGCGGCAGGGGGGGGGAGA       >  1:7070088/1‑35
            AGATTGTAGACACTAGCGGCAGGGGGGGGGAGAAa     >  1:724032/1‑34
             GATTGTAGACACTAGCGGCAGGGGGGGGGAGAAGA    >  1:2210310/1‑35
              ATTGTAGACACTAGCGGCAGGGGGGGGGAGAAGAA   >  1:7490360/1‑35
               TTGTAGACACTAGCGGCAGGGGGGGGGAGAAAAAa  >  1:4617533/1‑34
                                  |               
AACAAATTAAAGAGATTGTAGACACTAGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2454448‑2454481
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGGGAGAAGAAG  <  REL606/4471806‑4471792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.