New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2234598 =88 (0.860)15 (0.180) 5/38 NT 16.6% coding (538/1008 nt) yejK nucleoid‑associated protein NdpA
?REL606 3944634 = 81 (1.000)intergenic (+23/‑124) proM/aslB tRNA‑Pro/predicted regulator of arylsulfatase activity

TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2234636‑2234598
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGGTTTTTTGTTT  >  REL606/3944634‑3944645
                                                   
TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTG                  >  1:14742999/1‑35
TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTG                  <  1:18315068/35‑1
TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTG                  >  1:19342477/1‑35
TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTG                  <  1:12073938/35‑1
TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTG                  >  1:10518629/1‑35
TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTG                  <  1:9053194/35‑1
TCACTTTACTGAAAGGGCGAGTAGGGCGCAAAGTG                  <  1:8248174/35‑1
TCACTTTACTGAAAGGGCGAGTAGGGCGCAAAGTG                  <  1:7174196/35‑1
 CACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGG                 >  1:7538004/1‑35
 CACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGG                 <  1:4936455/35‑1
  ACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGC                >  1:11938099/1‑35
  ACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGC                <  1:10683216/35‑1
  ACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGC                <  1:827453/35‑1
  ACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGC                <  1:12367314/35‑1
   CTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCG               <  1:15216679/35‑1
   CTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCG               <  1:14908842/35‑1
    TTTCCTGAAAGGGCTAGTAGGGCGCAAAGTGGCGG              >  1:17472575/1‑35
    TTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG              <  1:321892/35‑1
    TTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG              <  1:18776668/35‑1
    TTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG              >  1:8165639/1‑35
    TTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG              >  1:12146311/1‑35
    TTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG              <  1:16867054/35‑1
    TTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG              >  1:12549945/1‑35
     TTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGG             >  1:7706729/1‑35
      TCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGG            >  1:7259333/1‑35
       CCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGT           >  1:19455386/1‑35
       CCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGT           >  1:15854494/1‑35
       CCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGT           >  1:6154315/1‑35
        CTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTT          >  1:12536738/1‑35
        CTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTT          >  1:11286206/1‑35
        CTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTT          >  1:14425833/1‑35
        CTGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTT          >  1:13995456/1‑35
         TGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGTTTT         >  1:8163370/1‑35
         TGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGTTTT         >  1:9010996/1‑35
         TGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGTTTT         >  1:2632456/1‑35
         TGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTc         >  1:8605643/1‑34
         TGAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTT         >  1:871945/1‑35
          GAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTct        >  1:12339635/1‑33
          GAAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTTT        >  1:10418954/1‑35
           AAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTCTT       >  1:18578463/1‑35
           AAAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTCTT       >  1:11346253/1‑35
            AAGGGCGAGTAGGGCGCAAAGTGGCGGGTTTTTTT      >  1:13411492/1‑35
            AAGGGCGAGTAGGGCGCAAAGTGGCGGGGTTTTTT      >  1:4739356/1‑35
             AGGGCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTt     >  1:18394381/1‑34
             AGGGCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTt     >  1:14645543/1‑34
             AGGGCGAGTAGGGCGCAAAGTGGCGGGGTTCTTTt     >  1:18114667/1‑34
             AGGGCGAGTAGGGCGCAAAGTGGCGGGGTTCTTTt     >  1:2322133/1‑34
              GGGCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTtt    >  1:13716782/1‑33
              GGGCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTat    >  1:13727478/1‑33
               GGCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTTTT   >  1:8309281/1‑35
                GCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTTTTg  >  1:11226143/1‑34
                GCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTTTTg  >  1:10663182/1‑34
                GCGAGTAGGGCGCAAAGTGGCGGGGTTTTTTTTTT  >  1:16498765/1‑35
                                                   
TCACTTTCCTGAAAGGGCGAGTAGGGCGCAAAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2234636‑2234598
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGGTTTTTTGTTT  >  REL606/3944634‑3944645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.