New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1004939 = | 65 (0.630) | 15 (0.180) | 5/40 | NT | 19.2% | coding (1138/1401 nt) | asnS | asparaginyl‑tRNA synthetase |
? | REL606 | 1339539 = | 72 (0.840) | coding (610/1170 nt) | yciM | hypothetical protein |
TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1004976‑1004939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctaAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC > REL606/1339539‑1339572 TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGG < 1:10704247/35‑1 TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGG < 1:10706022/35‑1 TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGG > 1:10909440/1‑35 TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGG > 1:741304/1‑35 TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGG > 1:4962216/1‑35 ATGCGCCTTAACGAAGACTGTAAAACCGTTGCGGC > 1:10512764/1‑35 ATGCGCCTTAACGAAGACGGTAAAACCGTTGCGGC > 1:973119/1‑35 ATGCGCCTTAACGAAGACGGTAAAACCGTTGCGGC < 1:2386416/35‑1 ATGCGCCTTAACGAAGACGGTAAAACCGTTGCGGC > 1:14464911/1‑35 ATGCGCCTTAACGAAGACGGTAAAACCGTTGCGGC > 1:12607364/1‑35 TGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCT < 1:8521453/35‑1 TGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCT < 1:13216883/35‑1 TGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCT < 1:4074596/35‑1 TGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCT < 1:2615628/35‑1 TGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCT > 1:1574971/1‑35 TGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCT > 1:2517343/1‑35 GCGCCTTAACGAAGACGGTAAAACCGTTGCGGCTA > 1:7646794/1‑35 GCGCCTTAACGAAGACGGTAAAACCGTTGCGGCTA > 1:3330763/1‑35 GCGCCTTAACGAAGACGGTAAAACCGTTGCGGCTA > 1:2874276/1‑35 GCGCCTTAACGAAGACGGTAAAACCGTTGCGGCTA > 1:18125815/1‑35 CGCCTTAACGAAGACGGTAAAACCGTTGCGGCTAA > 1:10920229/1‑35 CGCCTTAACGAAGACGGTAAAACCGTTGCGGCTAA > 1:18870936/1‑35 CGCCTTAACGAAGACGGTAAAACCGTTGCGGCTAA > 1:12651748/1‑35 GCCTTAACGAAGACTGTAAAACCGTTGCGGCTAAA > 1:8482125/1‑35 GCCTTAACGAAGACGGTAAAACCGTTGCGGCTAAA > 1:17938708/1‑35 GCCTTAACGAAGACGGTAAAACCGTTGCGGCTAAA > 1:8093975/1‑35 GCCTTAACGAAGACGGTAAAACCGTTGCGGCTAAA > 1:5476019/1‑35 GCCTTAACGAAGACGGTAAAACCGTTGCGGCTAAA > 1:4295859/1‑35 CCTTAACGAATACGGTAAAACCGTTGCGGCTAAAA > 1:11400412/1‑35 CCTTAACGAAGACGGTAAAACCGTTGCGGCTAAAA > 1:12795527/1‑35 CCTTAACGAAGACGGTAAAACCGTTGCGGCTAAAA > 1:6918697/1‑35 CCTTAACGAAGACGGTAAAACCGTTGCGGCTAAAA > 1:4163616/1‑35 CTTAACTAAGACGGTAAAACCGTTGCGGCTAAAAA > 1:11365122/1‑35 CTTAACGAAGACGGTAAAACCGTTGCGGCTAAAAA > 1:2672908/1‑35 CTTAACGAAGACGGTAAAACCGTTGCGGCTAAAAA > 1:1198533/1‑35 TTAACGAAGACGGTAAAACCGTTGCGGCTAAAGAA > 1:1589813/1‑35 TTAACGAAGACGGTAAAACCGTTGCGGCTAAAAAA > 1:910705/1‑35 TAACGAAGACGGTAAAACCGTTGCGGCTAAAAAAA > 1:18681435/1‑35 TAACGAAGACGGTAAAACCGTTGCGGCTAAAAAAA > 1:16008294/1‑35 TAACGAAGACGGTAAAACCGTTGCGGCTAAAAAAA > 1:19717281/1‑35 AACGAAGACGGTAAAACCGTTGCGGCTAAAAAAgg > 1:10963992/1‑33 AACGAAGACGGTAAAACCGTTGCGGCTAAAAAAgg > 1:13030755/1‑33 AACGAAGACGGTAAAACCGTTGCGGCTAAAAAAAa > 1:1840674/1‑34 AACGAAGACGGTAAAACCGTTGCGGCTAAAAAAAa > 1:20144081/1‑34 ACGAAGACGGTAAAACCGTTGCGGCTAAAAAAAGG > 1:6168927/1‑35 CGAAGACGGTAAAACCGTTGCGGCTAAAAAAGGGG > 1:2974395/1‑35 CGAAGACGGTAAAACCGTTGCGGCTAAAAAAAGGG > 1:7652799/1‑35 GAAGACGGTAAAACCGTTGCGGCTAAAAAAAGGGG > 1:18545788/1‑35 GAAGACGGTAAAACCGTTGCGGCTAAAAAAAAGGG > 1:5460775/1‑35 AAGACGGTAAAACCGTTGCGGCTAAAAAAGGGGGg > 1:8138933/1‑34 AAGACGGTAAAACCGTTGCGGCTAAAAAAAGGGGt > 1:18316337/1‑34 AGACGGTAAAACCGTTGCGGCTAAAAAAAGGGGtg > 1:2261549/1‑33 GACGGTAAAACCGTTGCGGCTAAAAAAAGGGGGGG > 1:3366226/1‑35 GACGGTAAAACCGTTGCGGCTAAAAAAAGGGGGGG > 1:7033477/1‑35 GCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCG > 1:8488139/1‑35 GCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCG > 1:8891801/1‑35 GCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCG < 1:6359075/35‑1 GCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCG > 1:20230753/1‑35 CTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCGC > 1:8407172/1‑35 CTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCGC < 1:16897670/35‑1 CTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCGC > 1:17417505/1‑35 AAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC > 1:4638167/1‑35 AAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC < 1:13470382/35‑1 AAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC > 1:1569094/1‑35 AAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC < 1:2656777/35‑1 AAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC < 1:15745319/35‑1 TATGCGCCTTAACGAAGACGGTAAAACCGTTGCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1004976‑1004939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctaAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCC > REL606/1339539‑1339572 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |