New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 64299484 (0.820)9 (0.110) 4/38 NT 12.4% intergenic (‑195/+14) lipA/ybeF lipoyl synthase/predicted DNA‑binding transcriptional regulator
?REL606 967183 = 61 (0.750)coding (423/591 nt) ycaK hypothetical protein

Only 100 of 158 total aligned reads displayed.

GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTGTAACAATACTTTTTCAAAATGCATTACGGATAAC  >  REL606/642960‑643028
                                  |                                  
gtgCCATTTTATCGTTCTGCGCTGTGATCTGGCTG                                    <  1:15156957‑M1/35‑1 (MQ=255)
gtgCCATTTTATCGTTCTGCGCTGTGATCTGGCTG                                    >  1:15455843‑M1/1‑35 (MQ=255)
gtgCCATTTTATCGTTCTGCGCTGTGATCTGGCTG                                    <  1:19367317‑M1/35‑1 (MQ=255)
gtgCCATTTTATCGTTCTGCGCTGTGATCTGGCTG                                    >  1:12248690‑M1/1‑35 (MQ=255)
gtgCCATTTTATCGTTCTGCGCTGTGATCTGGCTG                                    >  1:19958181‑M1/1‑35 (MQ=255)
 tgCCATTTTATCGTTCTGCGCTGTGATCTGGCTGg                                   >  1:17960374‑M1/1‑34 (MQ=255)
  gcaaTTTTATCGTTCTGCGCTGTGATCTGGCTGTa                                  <  1:13458294/32‑1 (MQ=255)
  gCCATTTTATCGTTCTGCGCTGTGATCTGGCTGTa                                  <  1:5250789/35‑1 (MQ=255)
   ccATTTTATCGTTCTGCGCTGTGATCTGGCTGgga                                 >  1:16894857‑M1/1‑32 (MQ=255)
   ccATTTTATCGTTCTGCGCTGTGATCTGGCTGTaa                                 <  1:19919878/35‑1 (MQ=255)
    cATTTTATCGTTCTGCGCTGTGATCTGGCTGTAAc                                <  1:6226542/35‑1 (MQ=255)
    cATTTTATAGTTCTGCGCTGTGATCTGGCTGTAAc                                <  1:8137908/35‑1 (MQ=255)
     aTTTTATCGTTCTGCGCTGTGATCTGGCTGTAACa                               <  1:4500273/35‑1 (MQ=255)
     aTTTTATCGTTCTGCGCTGTGATCTGGCTGTAACa                               <  1:6432040/35‑1 (MQ=255)
     aTTTTATCGTTCTGCGCTGTGATCTGGCTGTAACa                               <  1:2751070/35‑1 (MQ=255)
     aTTTTATCGTTCTGCGCTGTGATCTGGCTGTAACa                               <  1:2944744/35‑1 (MQ=255)
     aTTTTATCGTTCTGCGCTGTGATCTGGCTGTAACa                               <  1:7147774/35‑1 (MQ=255)
     aTTTTATCGTTCTGCGCTGTGATCTGGCTGTAACa                               <  1:16687350/35‑1 (MQ=255)
       tttATCGTTCTGCGCTGTGATCTGGCTGggaaaaa                             >  1:4799175‑M1/1‑28 (MQ=255)
       tttATCGTTCTGCGCTGTGATCTGGCTGTAACAAt                             <  1:14841213/35‑1 (MQ=255)
       tttATCGTTCTGCGCTGTGATCTGGCTGTAACAAt                             <  1:14129367/35‑1 (MQ=255)
       tttATCGTTCTGCGCTGTGATCTGGCTGTAACAAt                             <  1:11755859/35‑1 (MQ=255)
       tttATCGTTCTGCGCTGTGATCTGGCTGTAACAAt                             <  1:20132256/35‑1 (MQ=255)
        ttATCGTTCTGCGCTGTGATCTGGCTTTAACAATa                            >  1:10835525/1‑35 (MQ=255)
        ttATCGTTCTGCGCTGTGATCTGGCTGgtaaaaaa                            >  1:20525288‑M1/1‑27 (MQ=255)
        ttATCGTTCTGCGCTGTGATCTGGCTGggaaaaaa                            >  1:703448‑M1/1‑27 (MQ=255)
        ttATCGTTCTGCGCTGTGATCTGGCTGggaaaaaa                            >  1:17219780‑M1/1‑27 (MQ=255)
        ttATCGTTCTGCGCTGTGATCTGGCTGTAACAATa                            <  1:4755138/35‑1 (MQ=255)
        ttATCGTTCTGCGCTGTGATCTGGCTGTAACAATa                            <  1:14527885/35‑1 (MQ=255)
        ttATCGTTCTGCGCTGTGATCTGGCTGTAACAATa                            <  1:14318916/35‑1 (MQ=255)
         tATCGTTCTGCGCTGTGATCTGGCTGgggaaaaaa                           >  1:20147231‑M1/1‑26 (MQ=255)
         tATCGTTCTGCGCTGTGATCTGGCTGggaaaatac                           >  1:3881840‑M1/1‑26 (MQ=255)
         tATCGTTCTGCGCTGTGATCTGGCTGTAACAATAc                           <  1:10841146/35‑1 (MQ=255)
          aTCGTTCTGCGCTGTGATCTGGCTGggaaaaaact                          >  1:20539198‑M1/1‑25 (MQ=255)
          aTCGTTCTGCGCTGTGATCTGGCTGggaaaaaaat                          >  1:3924247‑M1/1‑25 (MQ=255)
          aTCGTTCTGCGCTGTGATCTGGCTGTAACAATACt                          <  1:5741770/35‑1 (MQ=255)
          aTCGTTCTGCGCTGTGATCTGGCTGTAACAATACt                          <  1:20475818/35‑1 (MQ=255)
          aTCGTTCTGCGCTGTGATCTGGCTGGAAAAATACt                          >  1:16061867/1‑35 (MQ=25)
           tCGTTCTGCGCTGTGATCTGGCTGTAACAATACtt                         <  1:1188252/35‑1 (MQ=255)
           tCGTTCTGCGCTGTGATCTGGCTGTAACAATACtt                         <  1:6159335/35‑1 (MQ=255)
           tCGTTCTGCGCTGTGATCTGGCTGTAACAATACtt                         <  1:18628427/35‑1 (MQ=255)
           tCGTTCTGCGCTGTGATCTGGCTGTAACAATACtt                         <  1:11416495/35‑1 (MQ=255)
           tCGTTCTGCGCTGTGATCTGGCTGGGACAAAACtt                         >  1:10965609/1‑35 (MQ=25)
            cGTTCTGCGCTGTGATCTGGCTGTAACAATACttt                        <  1:5726997/35‑1 (MQ=255)
            cGTTCTGCGCTGTGATCTGGCTGTAACAATACttt                        <  1:17647731/35‑1 (MQ=255)
            cGTTCTGCGCTGTGATCTGGCTGTAACAATACttt                        <  1:515912/35‑1 (MQ=255)
            cGTTCTGCGCTGTGATCTGGCTGGGACAAAACttt                        >  1:8304167/1‑35 (MQ=25)
              ttCTGCGCTGTGATCTGGCTGTAACGATACttttt                      <  1:13657969/35‑1 (MQ=255)
              ttCTGCGCTGTGATCTGGCTGTAACAATACttttt                      <  1:19777720/35‑1 (MQ=255)
               tCTGCGCTGTGATCTGGCTGTAACAATACTTTTTc                     <  1:2523693/35‑1 (MQ=255)
               tCTGCGCTGTGATCTGGCTGTAACAATACTTTTTc                     <  1:19546589/35‑1 (MQ=255)
                cTGCGCTGTGATCTGGCTGTAACAATACTTTTTCa                    <  1:10160619/35‑1 (MQ=255)
                 tGCGCTGTGATCTGGCTGTAACAATACTTTTTCaa                   <  1:1659111/35‑1 (MQ=255)
                  gcgcTGTTATCTGGCTGGAACAATACTTTTTCaaa                  >  1:1445080/1‑35 (MQ=25)
                  gcgcTGTTATCTGGCTGGAACAATACTTTTTCaaa                  >  1:15138742/1‑35 (MQ=25)
                   cgcTGTGATCTGGCTGTAACAATACTTTTTCaaaa                 <  1:3688700/35‑1 (MQ=255)
                   cgcTGTGATCTGGCTGTAACAATACTTTTTCaaaa                 <  1:14828573/35‑1 (MQ=255)
                    gcTGTGATCTGGCTGTAACAATACTTTTTCAAAAt                <  1:1775854/35‑1 (MQ=255)
                    gcTGTGATCTGGCTGTAACAATACTTTTTCAAAAt                <  1:4155628/35‑1 (MQ=255)
                    gcTGTGATCTGGCTGTAACAATACTTTTTCAAAAt                <  1:11014345/35‑1 (MQ=255)
                      tgtgATCTGGCTGTAACAATACTTTTTCAAAATGc              <  1:18607847/35‑1 (MQ=255)
                      tgtgATCTGGCTGTAACAATACTTTTTCAAAATGc              <  1:7935729/35‑1 (MQ=255)
                        tgATCTGGCTGTAACAATACTTTTTCAAAATGCAt            <  1:15375490/35‑1 (MQ=255)
                        tgATCTGGCTGTAACAATACTTTTTCAAAATGCAt            <  1:15814030/35‑1 (MQ=255)
                         gATCTGGCTGTAACAATACTTTTTCAAAATGCAtt           <  1:7193023/35‑1 (MQ=255)
                          aTCTGGCTGTAACAATACTTTTTCAAAATGCATTa          <  1:10893075/35‑1 (MQ=255)
                          aTCTGGCTGTAACAATACTTTTTCAAAATGCATTa          <  1:7460815/35‑1 (MQ=255)
                          aTCTGGCTGTAACAATACTTTTTCAAAATGCATTa          >  1:9563641/1‑35 (MQ=255)
                          aTCTGGCTGTAACAATACTTTTTCAAAATGCATTa          >  1:1809472/1‑35 (MQ=255)
                           tCTGGCTGTAACAATACTTTTTCAAAATGCATTAc         <  1:4654351/35‑1 (MQ=255)
                           tCTGGCTGTAACAATACTTTTTCAAAATGCATTAc         <  1:6905014/35‑1 (MQ=255)
                            cTGGCTGTAACAATACTTTTTCAAAATGCATTACg        <  1:10305283/35‑1 (MQ=255)
                            cTGGCTGTAACAATACTTTTTCAAAATGCATTACg        <  1:303793/35‑1 (MQ=255)
                            cTGGCTGTAACAATACTTTTTCAAAATGCATTACg        <  1:6220826/35‑1 (MQ=255)
                             tGGCTGTAACAATACTTTTTCAAAATGCATTACgg       <  1:7392785/35‑1 (MQ=255)
                             tGGCTGTAACAATACTTTTTCAAAATGCATTACgg       <  1:17408814/35‑1 (MQ=255)
                             tGGCTGTAACAATACTTTTTCAAAATGCATTACgg       <  1:14337422/35‑1 (MQ=255)
                             tGGCTGTAACAATACTTTTTCAAAATGCATTACgg       <  1:5562673/35‑1 (MQ=255)
                             tGGCTGTAACAATACTTTTTCAAAATGCATTACgg       <  1:11444070/35‑1 (MQ=255)
                              ggctgggaaaaaaatataagcgattatttaaaaaa      <  1:2619710‑M1/35‑31 (MQ=255)
                              ggctgggaaaaaaatataagcgattatttaaaaaa      >  1:19133477‑M1/1‑5 (MQ=255)
                              ggCTGTAACAATACTTTTTCAAAATGCATTACGGa      <  1:19087344/35‑1 (MQ=255)
                              ggCTGTAACAATACTTTTTCAAAATGCATTACGGa      <  1:3264340/35‑1 (MQ=255)
                               gctgggaaaaaaatataagcgattatttaaaaaat     <  1:12946803‑M1/35‑32 (MQ=255)
                               gctgggaaaaaaatataagcgattatttaaaaaat     >  1:5182388‑M1/1‑4 (MQ=255)
                               gctgggaaaaaaatataagcgattatttaaaaaat     >  1:10491770‑M1/1‑4 (MQ=255)
                               gCTGTAACAATACTTTTTCAAAATGCATTACGGAt     <  1:15004331/35‑1 (MQ=255)
                               gCTGTAACAATACTTTTTCAAAATGCATTACGGAt     <  1:418735/35‑1 (MQ=255)
                               gCTGTAACAATACTTTTTCAAAATGCATTACGGAt     <  1:8547684/35‑1 (MQ=255)
                                ctgggaaaaaaatataagcgattatttaaaaaata    <  1:17952124‑M1/35‑33 (MQ=255)
                                cTGTAACAATACTTTTTCAAAATGCATTACGGATa    >  1:5636039/1‑35 (MQ=255)
                                atGTAACAATACTTTTTCAAAATGCATTACGGATa    <  1:12541776/34‑1 (MQ=255)
                                 tgggaaaaaaatataagcgattatttaaaaaatat   >  1:3036409‑M1/1‑2 (MQ=255)
                                 tGTAACAATACTTTTTCAAAATGCATTACGGATaa   >  1:8418516/1‑35 (MQ=255)
                                 tGTAACAATACTTTTTCAAAATGCATTACGGATaa   >  1:3600962/1‑35 (MQ=255)
                                 tGTAACAATACTTTTTCAAAATGCATTACGGATaa   <  1:4099022/35‑1 (MQ=255)
                                  gTAACAATACTTTTTCAAAATGCATTACGGATAAc  >  1:1063776/1‑35 (MQ=255)
                                  gTAACAATACTTTTTCAAAATGCATTACGGATAAc  <  1:17259191/35‑1 (MQ=255)
                                  gTAACAATACTTTTTCAAAATGCATTACGGATAAc  <  1:9037436/35‑1 (MQ=255)
                                  gTAACAATACTTTTTCAAAATGCATTACGGATAAc  <  1:9207653/35‑1 (MQ=255)
                                  |                                  
GTGCCATTTTATCGTTCTGCGCTGTGATCTGGCTGTAACAATACTTTTTCAAAATGCATTACGGATAAC  >  REL606/642960‑643028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.