New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 362546064 (0.620)22 (0.260) 7/40 NT 30.7% pseudogene (3/738 nt) yhjQ b3534; cell division protein (chromosome partitioning ATPase)
?REL606 = 3992020 46 (0.540)coding (141/510 nt) ECB_03720 conserved hypothetical protein

Only 100 of 156 total aligned reads displayed.

TGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCATTCACCAATCCCCTACTT  >  REL606/3625426‑3625494
                                   |                                   
tGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGC                                     <  1:15659230‑M1/35‑1 (MQ=255)
 ggTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCa                                    >  1:20293186/1‑35 (MQ=255)
 ggTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCa                                    >  1:8808409/1‑35 (MQ=255)
 ggTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCa                                    <  1:12738087/35‑1 (MQ=255)
 ggTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCa                                    >  1:5908933/1‑35 (MQ=255)
 ggTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCa                                    >  1:15790644/1‑35 (MQ=255)
 ggTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCa                                    <  1:4349846/35‑1 (MQ=255)
  gttgttGTCCCCACGCCTCCCCGCCCCCCCTGCaa                                   >  1:6194396/1‑35 (MQ=255)
   ttgttgTCCCCACGCCTCCCCGCTCCCCCCGCAAt                                  >  1:12672660/1‑35 (MQ=38)
   ttgttgTCCCCACGCCTCCCCGCCCCCCCTGCAAt                                  >  1:13834855/1‑35 (MQ=255)
   ttgttgTCCCCACGCCTCCCCGCCCCCCCTGCAAt                                  <  1:7833310/35‑1 (MQ=255)
    tgttgtCCCCACGCCTCCCCGCCCCCCCATGCAAt                                  >  1:2316326/1‑35 (MQ=38)
    tgttgtCCCCACGCCTCCCCGCCCCCCCTGCAATc                                >  1:14286812/1‑35 (MQ=255)
    tgttgtCCCCACGCCTCCCCGCCCCCCCTGCAATc                                >  1:3993635/1‑35 (MQ=255)
     gttgtCCCCACGCCTCCCCGCCCCCCCTGCAATcc                               <  1:16468131/35‑1 (MQ=255)
       tgtCCCCACGCCTCCCCGCCCCCCCTGCAATCCCa                             >  1:5542695/1‑35 (MQ=255)
       tgtCCCCACGCCTCCCCGCCCCCCCTGCAATCCCa                             >  1:13872927/1‑35 (MQ=255)
        gtCCCCACGCCTCCCCGCCCCCCCTGCAATCCCAg                            >  1:13713402/1‑35 (MQ=255)
          ccccCCCCCCCCCCCCCCCCCCTGCCATACCCAgg                           <  1:9678019/35‑2 (MQ=2)
          ccccCCCCCCCCCCCCCCCCCCTGCCAGCCCAgcg                          <  1:4933935/35‑3 (MQ=0)
           cccGCGCCTCCCCCCCCCCGCCACAATTCTAGTag                         <  1:4857769/35‑2 (MQ=12)
           cccACGCCTCCCCGCCCCCCCTGCAATCCCAGTAc                         <  1:12943112/35‑1 (MQ=255)
           cccACGCCTCCCCGCCCCCCCTGCAATCCCAGTAc                         <  1:17229695/35‑1 (MQ=255)
           cccACGCCTCCCCGCCCCCCCTGCAATCCCAGTAc                         >  1:8116624/1‑35 (MQ=255)
            ccACGCCTCCCCGCCCCCCCTGCAATCCCAGTACg                        >  1:12998095/1‑35 (MQ=255)
            ccACGCCTCCCCGCCCCCCCTGCAATCCCAGTACg                        >  1:12582013/1‑35 (MQ=255)
            ccAAGCCTCCCCGCACCCCCTGCAATCCCAGTACg                        <  1:14454292/35‑1 (MQ=255)
             cACGCCTCCCCGCCCCCCCTGCAATCCCAGTACgg                       >  1:5716044/1‑35 (MQ=255)
             cACGCCTCCCCGCCCCCCCTGCAATCCCAGTACgg                       <  1:17826711/35‑1 (MQ=255)
             cACGCCTCCCCGCCCCCCCTGCAATCCCAGTACgg                       <  1:19775017/35‑1 (MQ=255)
             cACGCCTCCCCGCCCCCCCTGCAATCCCAGTACgg                       >  1:7501651/1‑35 (MQ=255)
              aCGCCTCCCCGCCCCCCCTGCAATCCCAGTACGGc                      >  1:1917258/1‑35 (MQ=255)
               cGCCTCCCCGCCCCCCCTGCAATCCCAGTACGGcc                     >  1:6062101/1‑35 (MQ=255)
               cGCCTCCCCGCCCCCCCTGCAATCCAAGTACGGcc                     <  1:15124836/35‑1 (MQ=255)
                gCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCa                    >  1:1164153/1‑35 (MQ=255)
                gCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCa                    >  1:8873445/1‑35 (MQ=255)
                gCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCa                    >  1:4659881/1‑35 (MQ=255)
                gCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCa                    >  1:14927046/1‑35 (MQ=255)
                gCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCa                    >  1:14099564/1‑35 (MQ=255)
                ccctCCCCCCCCCCCCTGCcattgaaacggatccc                     <  1:16997067‑M1/34‑17 (MQ=255)
                 ccTCCCCGCCCCCCCTGCAATCCCAGTACGGCCAt                   >  1:19875507/1‑35 (MQ=255)
                 ccTCCCCGCCCCCCCTGCAATCCCAGTACGGCCAt                   >  1:5393694/1‑35 (MQ=255)
                  cTCCCCCCCCCCCCTGCcattgaaacggatcccgg                   <  1:1308403‑M1/35‑19 (MQ=255)
                   tCCCCGCCCCCCCTGCAATCCCAGTACGGCCATTc                 >  1:16922706/1‑35 (MQ=255)
                   tCCCCCCCCCCCCTGCcattgaaacggatcccggt                  <  1:6995215‑M1/35‑20 (MQ=255)
                   ccccccCCCCCCCTGCcattgaaacggatcccggt                  <  1:1995988‑M1/34‑20 (MQ=255)
                   acccccCCCCCCCTGCcattgaaacggatcccggt                  <  1:6293306‑M1/34‑20 (MQ=255)
                    tccccCCCCCCCTGCcattgaaacggatcccggtg                 <  1:11425242‑M1/34‑21 (MQ=255)
                    ccccGCCCCCCCTGCAATCCCAGTACGGCCATTCa                >  1:5776475/1‑35 (MQ=255)
                    ccccCCCCCCCCTGCcattgaaacggatcccggtg                 <  1:10625689‑M1/35‑21 (MQ=255)
                    ccccCCCCCCCCTGCcattgaaacggatcccggtg                 <  1:7546485‑M1/35‑21 (MQ=255)
                     cccGCCCCCCCTGCAATCCCAGTACGGCCAATCAc               >  1:2073138/1‑35 (MQ=255)
                      ccGCCCCCCCTGCcattgaaacggatcccggtgca               <  1:13469155‑M1/35‑23 (MQ=255)
                      ccGCCCCCCCTGCAATCCCAGTACGGCCATTCAcc              <  1:3580360/35‑1 (MQ=255)
                       ccccccccctgCcattgaaacggatcccggtgcaa              <  1:17371525‑M1/33‑24 (MQ=255)
                        gCCCCCCCTGCAATCCCAGTCCGGCCATTCACCaa            <  1:10964256/35‑1 (MQ=255)
                        gCCCCCCCTGCAATCCCAGTACGGCCATTCACCaa            >  1:7252871/1‑35 (MQ=255)
                        gCCCCCCCTGCAATCCCAGTACGGCCATTCACCaa            >  1:9124841/1‑35 (MQ=255)
                        gCCCCCCCTGCAATCCCAGTACGGCCATTCACCaa            >  1:9635260/1‑35 (MQ=255)
                        gCCCCCCCTGCAATCCCAGTACGGCCATTCAACaa            >  1:5380808/1‑35 (MQ=255)
                        cccccccctGCcattgaaacggatcccggtgcaag             <  1:7222412‑M1/34‑25 (MQ=255)
                         cccccccTGCcattgaaacggatcccggtgcaagt            <  1:9414892‑M1/35‑26 (MQ=255)
                         cccccccTGCAATCCCAGTACGGCTATTCACCAAt           >  1:11134030/1‑35 (MQ=255)
                          ccccccTGCcattgaaacggatcccggtgcaagtg           <  1:376980‑M1/35‑27 (MQ=255)
                          ccccccTGCcattgaaacggatcccggtgcaagtg           <  1:15353296‑M1/35‑27 (MQ=255)
                          ccccccTGCcattgaaacggatcccggtgcaagtg           <  1:10130357‑M1/35‑27 (MQ=255)
                           cccccTGCAATCCCAGTACGGCCATTCACCAATcc         >  1:13455153/1‑35 (MQ=255)
                            ccccTGCcattgaaacggatcccggtgcaagtgcc         <  1:18666712‑M1/35‑29 (MQ=255)
                            ccccTGCcattgaaacggatcccggtgcaagtgcc         <  1:17840025‑M1/35‑29 (MQ=255)
                            ccccTGCAATCCCAGTCCGGCCATTCACCAATccc        <  1:9953641/35‑1 (MQ=255)
                             cccTGCcattgaaacggatcccggtgcaagtgcct        <  1:104660‑M1/35‑30 (MQ=255)
                              ccTGCcattgaaacggatcccggtgcaagtgcctt       <  1:10238596‑M1/35‑31 (MQ=255)
                              ccTGCcattgaaacggatcccggtgcaagtgcctt       <  1:908297‑M1/35‑31 (MQ=255)
                              ccTGCcattgaaacggatcccggtgcaagtgcctt       <  1:6349489‑M1/35‑31 (MQ=255)
                              ccTGCcattgaaacggatcccggtgcaagtgcctt       <  1:13474168‑M1/35‑31 (MQ=255)
                              ccTGCcattgaaacggatcccggtgcaagtgcctt       <  1:161849‑M1/35‑31 (MQ=255)
                              ccTCCAATCCCAGTCCGGCCATTCACCAATCCCCt      <  1:3731525/35‑1 (MQ=25)
                               cTGCcattgaaacggatcccggtgcaagtgccttc      <  1:7052560‑M1/35‑32 (MQ=255)
                               cTGCcattgaaacggatcccggtgcaagtgccttc      >  1:17163340‑M1/1‑4 (MQ=255)
                               cTGCAATCCCAGTACGGCCATTCACCAATCCCCTa     >  1:2734711/1‑35 (MQ=255)
                               cTGCAACCCCAGTCCGGCCATTCACCAATCCCCTa     <  1:1235932/35‑1 (MQ=25)
                                 tccAACCCCAGTCCGGCCATTCACCAATCCCCTAc    <  1:5177115/33‑1 (MQ=25)
                                 tGCcattgaaacggatcccggtgcaagtgccttcc     >  1:10116050‑M1/1‑3 (MQ=255)
                                 tGCcattgaaacggatcccggtgcaagtgccttcc     >  1:951964‑M1/1‑3 (MQ=255)
                                 tGCcattgaaacggatcccggtgcaagtgccttcc     >  1:13384080‑M1/1‑3 (MQ=255)
                                 tGCAATCCCAGTCCGGCCATTCACCAATCACCTAc    <  1:19388156/35‑1 (MQ=38)
                                 tGCAATCCCAGTACGGCCATTCACCAATCCCCTAc    >  1:8965589/1‑35 (MQ=255)
                                  gCcattgaaacggatcccggtgcaagtgccttccc    <  1:16314315‑M1/35‑34 (MQ=255)
                                  gCcattgaaacggatcccggtgcaagtgccttccc    >  1:16509266‑M1/1‑2 (MQ=255)
                                  gCcattgaaacggatcccggtgcaagtgccttccc    <  1:8333603‑M1/35‑34 (MQ=255)
                                  gCcattgaaacggatcccggtgcaagtgccttccc    <  1:10293208‑M1/35‑34 (MQ=255)
                                  gCcattgaaacggatcccggtgcaagtgccttccc    >  1:5233909‑M1/1‑2 (MQ=255)
                                  gCAATCCCAGTACGGCCATTCACCAATCCCCTACt   <  1:7187885/35‑1 (MQ=255)
                                  gCAATCCCAGTACGGCCATTCACCAATCCCCTACt   <  1:11696704/35‑1 (MQ=255)
                                  cccattgaaacggatcccggtgcaagtgccttccc    >  1:27020‑M1/2‑2 (MQ=255)
                                   ccattgaaacggatcccggtgcaagtgccttccct   <  1:15521541‑M1/35‑35 (MQ=255)
                                   ccattgaaacggatcccggtgcaagtgccttccct   <  1:18805687‑M1/35‑35 (MQ=255)
                                   ccattgaaacggatcccggtgcaagtgccttccct   >  1:19098239‑M1/1‑1 (MQ=255)
                                   ccattgaaacggatcccggtgcaagtgccttccct   <  1:2842419‑M1/35‑35 (MQ=255)
                                   cAATCCCAGTACGGCCATTCACCAATCCCCTACtt  >  1:7862733/1‑35 (MQ=255)
                                   |                                   
TGGTTGTTGTCCCCACGCCTCCCCGCCCCCCCTGCAATCCCAGTACGGCCATTCACCAATCCCCTACTT  >  REL606/3625426‑3625494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.