New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 547699 | NA (NA) | 48 (0.470) | 30/48 | NT | NA | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 557127 = | NA (NA) | coding (70/282 nt) | ECB_00514 | conserved hypothetical protein |
Only 100 of 103 total aligned reads displayed.
TCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/547666‑547699 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGATGACGAGTCGATGCAGGATGATATTCTTA > REL606/557127‑557160 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:13870311/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:8160549/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:15372874/1‑35 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:7130545/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:17485078/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:18171969/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:18616346/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:6196366/1‑35 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:19937834/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:19960008/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:472666/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:2086650/1‑35 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:2244589/1‑35 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:2489203/1‑35 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:4025080/1‑35 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:3116565/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:3522752/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:3620985/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:3826079/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:10020616/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:11293974/1‑35 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:8232465/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:8911913/35‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:8774735/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCTc > 1:15959100/1‑34 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA > 1:3656560/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA > 1:10171067/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA < 1:10907211/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA > 1:210910/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA > 1:20415378/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA > 1:4897090/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA < 1:12428626/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA > 1:18471981/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA < 1:12668900/35‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA > 1:13807996/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA > 1:7864323/1‑35 CATACACTAAATCAGTAAGTTGGCAGCATCACCTA < 1:8140339/35‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT < 1:13836616/35‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT > 1:13359426/1‑35 ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT < 1:2812870/35‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT > 1:13910868/1‑35 ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT < 1:18595142/35‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT > 1:8232461/1‑35 ATACACTAAATCAGTAAGTTGGCAGCATCACCTAT < 1:222000/35‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCTATGA > 1:13236140/1‑35 ACACTAAATCAGTAAGTTGGCAGCATCACCTATGA > 1:6956973/1‑35 CACTAAATCAGTAAGTTGGCAGCATCACCTATGAT > 1:11740006/1‑35 ACTAAATCAGTAAGTTGGCAGCATCACCTATGATG > 1:8142194/1‑35 ACTAAATCAGTAAGTTGGCAGCATCACCTATGATG < 1:12742790/35‑1 CTAAATCAGTAAGTTGGCAGCATCACCTATGATGA < 1:5729580/35‑1 CTAAATCAGTAAGTTGGCAGCATCACCTATGATGA > 1:15823170/1‑35 TAAATCAGTAAGTTGGCAGCATCACCTATGATGAC < 1:8868477/35‑1 TAAATCAGTAAGTTGGCAGCATCACCTATGATGAC > 1:3228227/1‑35 AAATCAGTAAGTTGGCAGCATCACCTATGATGACG > 1:14088033/1‑35 AATCAGTAAGTTGGCAGCATCACCTATGATGACGA < 1:491043/35‑1 AATCAGTAAGTTGGCAGCATCACCTATGATGACGA > 1:1007447/1‑35 ATCAGTAAGTTGGCAGCATCACCTATGATGACGAG > 1:10343352/1‑35 ATCAGTAAGTTGGCAGCATCACCTATGATGACGAG > 1:8473131/1‑35 TCAGTAAGTTGGCAGCATCACCTATGATGACGAGT > 1:3348417/1‑35 TCAGTAAGTTGGCAGCATCACCTATGATGACGAGT < 1:6237446/35‑1 TCAGTAAGTTGGCAGCATCACCTATGATGACGAGT > 1:19907161/1‑35 AGTAAGTTGGCAGCATCACCTATGATGACGAGTCG > 1:7828037/1‑35 AGTAAGTTGGCAGCATCACCTATGATGACGAGTCG < 1:6402017/35‑1 AGTAAGTTGGCAGCATCACCTATGATGACGAGTCG < 1:9069385/35‑1 gttAGTTGGCAGCATCACCTATGATGACGAGTCGA < 1:2589082/32‑1 GTAAGTTGGCAGCATCACCTATGATGACGAGTCGA < 1:9578251/35‑1 GTAAGTTGGCAGCATCACCTATGATGACGAGTCGA > 1:12510473/1‑35 GTAAGTTGGCAGCATCACCTATGATGACGAGTCGA < 1:18010151/35‑1 TAAGTTGGCAGCATCCCCTATGATGACGAGTCGAT < 1:2747431/35‑1 TAAGTTGGCAGCATCACCTATGATGACGAGTCGAT > 1:7346390/1‑35 TAAGTTGGCAGCATCACCTATGATGACGAGTCGAT > 1:18667199/1‑35 AAGTTGGCAGCATCACCTATGATGACGAGTCGATG > 1:118344/1‑35 AAGTTGGCAGCATCACCTATGATGACGAGTCGATG > 1:15304446/1‑35 tgGGCAGCATCACCTATGATGACGAGTCGATGCAG < 1:11970944/33‑1 TTGGCAGCATCACCTATGATGACGAGTCGATGCAG > 1:10207360/1‑35 TTGGCAGCATCACCTATGATGACGAGTCGATGCAG < 1:8208325/35‑1 TTGGCAGCATCACCTATGATGACGAGTCGATGCAG < 1:3651776/35‑1 TTGGCAGCATCACCTATGATGACGAGTCGATGCAG < 1:19636175/35‑1 TGGCAGCATCACCTATGATGACGAGTCGATGGAGG > 1:858072/1‑35 TGGCAGCATCACCTATGATGACGAGTCGATGCAGG > 1:19793091/1‑35 TGGCAGCATCACCTATGATGACGAGTCGATGCAGG < 1:1326235/35‑1 TGGCAGCATCACCTATGATGACGAGTCGATGCAGG > 1:14814927/1‑35 TGGCAGCATCACCTATGATGACGAGTCGATGCAGG > 1:15279283/1‑35 GCAGCATCACCTATGATGACGAGTCGATGCAGGAT > 1:20568885/1‑35 AGCATCACCTATGATGACGAGTCGATGCAGGATGA > 1:19573673/1‑35 AGCATCACCTATGATGACGAGTCGATGCAGGATGA > 1:16764900/1‑35 AGCATCACCTATGATGACGAGTCGATGCAGGATGA > 1:15442450/1‑35 AGCATCACCTATGATGACGAGTCGATGCAGGATGA < 1:7448419/35‑1 GCATCACCTATGATGACGAGTCGATGCAGGATGAT > 1:17308781/1‑35 GCATCACCTATGATGACGAGTCGATGCAGGATGAT < 1:16391580/35‑1 CATCACCTATGATGACGAGTCGATGCAGGATGATA < 1:7205375/35‑1 tccCCTATGATGACGAGTCGATGCAGGATGATATT < 1:5023333/32‑1 TCACCTATGATGACGAGTCGATGCAGGATGATATT < 1:8514748/35‑1 CACCTATGATGACGAGTCGATGCAGGATGATATTC < 1:12318758/35‑1 ACCTATGATGACGAGTCGATGCAGGATGATATTCT > 1:691748/1‑35 ACCTATGATGACGAGTCGATGCAGGATGATATTCT < 1:19969955/35‑1 CCTATGATGACGAGTCGATGCAGGATGATATTCTT < 1:5449585/35‑1 CCTATGATGACGAGTCGATGCAGGATGATATTCTT < 1:14080060/35‑1 CCTATGATGACGAGTCGATGCAGGATGATATTCTT < 1:13229875/35‑1 CTATGATGACGAGTCGATGCAGGATGATATTCTTA > 1:6505388/1‑35 TCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/547666‑547699 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGATGACGAGTCGATGCAGGATGATATTCTTA > REL606/557127‑557160 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |