New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 218779 | 70 (0.680) | 12 (0.160) | 4/36 | NT | 15.1% | coding (669/711 nt) | cutF | lipoprotein involved with copper homeostasis and adhesion |
? | REL606 | 4525951 = | 82 (1.060) | intergenic (+8/‑59) | fimC/fimD | chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis |
Only 100 of 194 total aligned reads displayed.
CCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC > REL606/4525917‑4525985 | gccgactaaagtattggcacccgatacggcagggg > 1:7561081‑M2/35‑35 (MQ=255) gccgactaaagtattggcacccgatacggcagggg > 1:19174817‑M2/35‑35 (MQ=255) cccAAAATGACGGGCGTAATGGAATAACGCAgggg < 1:15225258/35‑1 (MQ=255) cccAAAATGACGGGCGTAATGGAATAACGCAgggg > 1:15377873/1‑35 (MQ=255) ccgactaaagtattggcacccgatacggcaggggg > 1:7333334‑M2/34‑35 (MQ=255) ccAAAATGACGGGCGTAATGGAATAACGCAggggg > 1:17746988/1‑35 (MQ=255) cAAAATGACGGGCGTAATGGAATAACGCAGGGGGa > 1:17716263/1‑35 (MQ=255) gactaaagtattggcacccgatacggcagggGgat > 1:17887183‑M2/32‑34 (MQ=255) gactaaagtattggcacccgatacggcagggGGaa > 1:5695669‑M2/32‑35 (MQ=255) gactaaagtattggcacccgatacggcagggGAaa > 1:12674645‑M2/32‑35 (MQ=255) aaaaTGACGGGCGTAATGGGATAACGCAGGGGGaa < 1:12682329/35‑1 (MQ=255) aaaaTGACGGGCGTAATGGAATAACGCAGGGGGaa > 1:13905539/1‑35 (MQ=255) aaaaTGACGGGCGTAATGGAATAACGCAGGGGGaa > 1:8810853/1‑35 (MQ=255) aaaaTGACGGGCGTAATGGAATAACGCAGGGGGaa > 1:14038212/1‑35 (MQ=255) aTGACGGGCGTAATGGAATAACGCAGGTGGAAttt > 1:6239621/1‑35 (MQ=255) aTGACGGGCGTAATGGAATAACGCAGGGGGAAttt > 1:17943753/1‑35 (MQ=255) aTGACGGGCGTAATGGAATAACGCAGGGGGAAttt > 1:20218496/1‑35 (MQ=255) aTGACGGGCGTAATGGAATAACGCAGGGGGAAttt < 1:3600579/35‑1 (MQ=255) aTGACGGGCGTAATGGAATAACGCAGGGGGAAttt < 1:6177991/35‑1 (MQ=255) tGACGGGCGTAATGGAATAACGCAGGGGGAAtttt < 1:16763680/35‑1 (MQ=255) tGACGGGCGTAATGGAATAACGCAGGGGGAAtttt > 1:9678049/1‑35 (MQ=255) aaagtattggcacccgatacggcagggGGAAtttt > 1:2193919‑M2/28‑35 (MQ=255) aaagtattggcacccgatacggcagggGGAAtttt > 1:11476071‑M2/28‑35 (MQ=255) gACGGGCGTAATGGAATAACGCAGGGGGAAttttt < 1:19793519/35‑1 (MQ=255) gACGGGCGTAATGGAATAACGCAGGGGGAAttttt < 1:8601476/35‑1 (MQ=255) gACGGGCGTAATGGAATAACGCAGGGGGAAttttt > 1:13295179/1‑35 (MQ=255) gACGGGCGTAATGGAATAACGCAGGGGGAAttttt > 1:10103054/1‑35 (MQ=255) gACGGGCGTAATGGAATAACGCAGGGGGAAttttt < 1:2856921/35‑1 (MQ=255) gACGGGCGTAATGGAATAACGCAGGGGGAAttttt > 1:699527/1‑35 (MQ=255) aagtattggcacccgatacggcagggGGAAttttt > 1:6265302‑M2/27‑35 (MQ=255) agtattggcacccgatacggcagggGGaattttac > 1:12182402‑M2/26‑33 (MQ=255) agtattggcacccgatacggcagggGGAATTTATc > 1:10394355‑M2/26‑35 (MQ=255) aCGGGCGTAATGGAATAACGCAGGGGGAATTTTTc < 1:18574119/35‑1 (MQ=255) aCGGGCGTAATGGAATAACGCAGGGGGAATTTTTc < 1:14821723/35‑1 (MQ=255) aCGGGCGTAATGGAATAACGCAGGGGGAATTTTTc > 1:11123093/1‑35 (MQ=255) aCGGGCGTAATGGAATAACGCAGGGGGAATTTTTc < 1:10945370/35‑1 (MQ=255) gtattggcacccgatacggcagggGgaattttccc > 1:14538603‑M2/25‑32 (MQ=255) gtattggcacccgatacggcagggGGAATTTTtcc > 1:9533844‑M2/25‑34 (MQ=255) cGGGCGTAATGGAATAACGCAGGGGGAATTTTTCg > 1:19873231/1‑35 (MQ=255) cGGGCGTAATGGAATAACGCAGGGGGAATTTTTCg < 1:12353852/35‑1 (MQ=255) cGGGCGTAATGGAATAACGCAGGGGGAATTTTTCg < 1:12916629/35‑1 (MQ=255) cGGGCGTAATGGAATAACGCAGGGGGAATTTTTCg < 1:3570503/35‑1 (MQ=255) gggCGTAATGGAATAACGCAGGGGGAATTTTTCGc < 1:2301879/35‑1 (MQ=255) ggCGTAATGGAATAACGCAGGGGGAATTTTTCGcc < 1:10603155/35‑1 (MQ=255) ggCGTAATGGAATAACGCAGGGGGAATTTTTCGcc > 1:5127165/1‑35 (MQ=255) ggCGTAATGGAATAACGCAGGGGGAATTTTTCGcc > 1:14996221/1‑35 (MQ=255) ggCGTAATGGAATAACGCAGGGGGAATTTTTCGcc < 1:9392844/35‑1 (MQ=255) ggCGTAATGGAATAACGCAGGGGGAATTTTTCGcc > 1:10554164/1‑35 (MQ=255) gCGTAATGGAATAACGCATGGGGAATTTTTCGCCt > 1:8788745/1‑35 (MQ=255) gCGTAATGGAATAACGCAGGGGGAATTTTTCGCCt > 1:681945/1‑35 (MQ=255) gCGTAATGGAATAACGCAGGGGGAATTTTTCGCCt < 1:3824431/35‑1 (MQ=255) cGTAATGGAATAACGCAGGGGGAATTTTTCGCCTg > 1:14430465/1‑35 (MQ=255) tAATGGAATAACGCAGGGGGAATTTTTCGCCTGaa > 1:12812581/1‑35 (MQ=255) aaTGGAATAACGCAGGGGGAATTTTTCGCCTGAAt < 1:18936990/35‑1 (MQ=255) aTGGAATAACGCAGGGGGAATTTTTCGCCTGAATa < 1:5773245/35‑1 (MQ=255) tGGAATAACGCAGGGGGAATTTTTCGCCTGAATaa > 1:7895050/1‑35 (MQ=255) tGGAATAACGCAGGGGGAATTTTTCGCCTGAATaa < 1:2660348/35‑1 (MQ=255) ggAATAACGCAGGGGGAATTTTTCGCCTGAATaaa > 1:8057236/1‑35 (MQ=255) gAATAACGCAGGGGGAATTTTTCGCCTGAATaaaa > 1:20399418/1‑35 (MQ=255) gAATAACGCAGGGGGAATTTTTCGCCTGAATaaaa < 1:5314294/35‑1 (MQ=255) aaTAACGCAGGGGGAATTTTTCGCCTGAATaaaaa > 1:4295544/1‑35 (MQ=255) aaTAACGCAGGGGGAATTTTTCGCCTGAATaaaaa < 1:9123785/35‑1 (MQ=255) aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAg < 1:17028525/35‑1 (MQ=255) aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAg < 1:3176745/35‑1 (MQ=255) aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAg < 1:15607870/35‑1 (MQ=255) tAACGCAGGGTGAATTTTTCGCCTGAATAAAAAGa > 1:10051985/1‑35 (MQ=255) aaCGCAGGTGGAATTTTTCGCCTGAATAAAAAGaa > 1:13748262/1‑35 (MQ=255) aaCGCAGGGGGAATTTTTCGCCTGAATAAAAAGaa > 1:14591764/1‑35 (MQ=255) aCGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAt < 1:5262070/35‑1 (MQ=255) aCGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAt > 1:4971467/1‑35 (MQ=255) aCGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAt < 1:13717606/35‑1 (MQ=255) cGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAtt > 1:15612825/1‑35 (MQ=255) cGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAtt < 1:10711695/35‑1 (MQ=255) cGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAtt > 1:5562997/1‑35 (MQ=255) cGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAtt > 1:18743683/1‑35 (MQ=255) gcagggGGAATTTTTCGCCTGAATAAAAAGAattt > 1:14827107‑M2/7‑34 (MQ=255) gcagggGGAATTTTTCGCCTGAATAAAAAGAATTg > 1:2262202‑M2/7‑35 (MQ=255) gcagggGGAATTTTTCGCCTGAATAAAAAGAATTg < 1:7103780‑M2/29‑1 (MQ=255) gcagggGGAATTTTTCGCCTGAATAAAAAGAATTg > 1:19480815‑M2/7‑35 (MQ=255) gcagggGGAATTTTTCGCCTGAATAAAAAGAATTg > 1:12046180‑M2/7‑35 (MQ=255) gcagggGGAATTTTTCGCATGAATAAAAAGAATTg < 1:5504980‑M2/29‑1 (MQ=255) cagggGGAATTTTTCGCCTGAATAAAAAGAATTGa > 1:16638936‑M2/6‑35 (MQ=255) cagggGGAATTTTTCGCCTGAATAAAAAGAATTGa > 1:7414346‑M2/6‑35 (MQ=255) cagggGGAATTTTTCGCCTGAATAAAAAGAATTGa < 1:4039349‑M2/30‑1 (MQ=255) agggGGAATTTTTCGCCTGAATAAAAAGAATTGAc > 1:6009889‑M2/5‑35 (MQ=255) gggGGAATTTTTCGCCTGAATAAAAAGAATTGACt < 1:13412032‑M2/32‑1 (MQ=255) gggGGAATTTTTCGCCTGAATAAAAAGAATTGACt < 1:10329934‑M2/32‑1 (MQ=255) gggGGAATTTTTCGCCTGAATAAAAAGAATTGACt < 1:3353049‑M2/32‑1 (MQ=255) gggGGAATTTTTCGCCTGAATAAAAAGAATTGACt > 1:4895612‑M2/4‑35 (MQ=255) gggGGAATTTTTCGCCTGAATAAAAAGAATTGACt < 1:16321985‑M2/32‑1 (MQ=255) ggGGAATTTTTCGCCTGAATAAAAAGAATTGACTg > 1:18021428‑M2/3‑35 (MQ=255) ggGGAATTTTTCGCCTGAATAAAAAGAATTGACTg > 1:20326928‑M2/3‑35 (MQ=255) ggGGAATTTTTCGCCTGAATAAAAAGAATTGACTg > 1:10335992‑M2/3‑35 (MQ=255) ggGGAATTTTTCGCCTGAATAAAAAGAATTGACTg > 1:2150611‑M2/3‑35 (MQ=255) gGGAATTTTTCGCCTGAATAAAAAGAATTGACTGc > 1:4398098‑M2/2‑35 (MQ=255) gGGAATTTTTCGCCTGAATAAAAAGAATTGACTGc < 1:12008676‑M2/34‑1 (MQ=255) gGGAATTTTTCGCCTGAATAAAAAGAATTGACTGc > 1:19197068‑M2/2‑35 (MQ=255) ggAATTTTTCGCCTGAATAAAAAGAATTGACtcgc > 1:165016/1‑32 (MQ=255) ggAATTTTTCGCCTGAATAAAAAGAATTGACTGcc > 1:15803783/1‑35 (MQ=255) ggAATTTTTCGCCTGAATAAAAAGAATTGACTGcc < 1:17617754/35‑1 (MQ=255) | CCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC > REL606/4525917‑4525985 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |