New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1723584 =50 (0.490)4 (0.050) 3/36 NT 6.2% intergenic (‑190/‑118) ydhQ/valV hypothetical protein/tRNA‑Val
?REL606 = 2780594 110 (1.070)intergenic (‑196/‑120) cysJ/ygcM sulfite reductase, alpha subunit, flavoprotein/6‑pyruvoyl tetrahydrobiopterin synthase (PTPS)

Only 100 of 163 total aligned reads displayed.

AACAAAATAGATTAACCAACCTAATGAAAAACAAATGAATTTAGCCAATCATTAAGATAAATCAGCGAT  >  REL606/2780560‑2780628
                                  |                                  
aacaaAATAGATTAACCAACCTAATGAAAAACaaa                                    <  1:13627486/35‑1 (MQ=255)
aacaaAATAGATTAACCAACCTAATGAAAAACaaa                                    >  1:12828688/1‑35 (MQ=255)
   aaaaTAGATTAACCAACCTAATGAAAAACAAATGa                                 >  1:15495744/1‑35 (MQ=255)
   aaaaTAGATTAACCAACCTAATGAAAAACAAATGa                                 >  1:16718341/1‑35 (MQ=255)
   aaaaTAGATTAACCAACCTAATGAAAAACAAATGa                                 >  1:596436/1‑35 (MQ=255)
    aaaTAGATTAACCAACCTAATGAAAAACAAATGaa                                >  1:15667591/1‑35 (MQ=255)
    aaaTAGATTAACCAACCTAATGAAAAACAAATGaa                                <  1:4682831/35‑1 (MQ=255)
     aaTAGATTAACCAACCTAATGAAAAACAAATGAAt                               >  1:11563681/1‑35 (MQ=255)
     aaTAGATTAACCAACCTAATGAAAAACAAATGAAt                               <  1:18513217/35‑1 (MQ=255)
      aTAGATTAACCAACCTAATGAAAAACAAATGAAtt                              >  1:5686887/1‑35 (MQ=255)
      aTAGATTAACCAACCTAATGAAAAACAAATGAAtt                              <  1:17977975/35‑1 (MQ=255)
      aTAGATTAACCAACCTAATGAAAAACAAATGAAtt                              >  1:11059156/1‑35 (MQ=255)
      aTAGATTAACCAACCTAATGAAAAACAAATGAAtt                              <  1:19923890/35‑1 (MQ=255)
       tAGATTAACCAACCTAATGAAAAACAAATGAAttt                             >  1:5854008/1‑35 (MQ=255)
       tAGATTAACCAACCTAATGAAAAACAAATGAAttt                             >  1:18301685/1‑35 (MQ=255)
        aGATTAACCAACCTAATGAAAAACAAATGAATTTa                            >  1:2605505/1‑35 (MQ=255)
        aGATTAACCAACCTAATGAAAAACAAATGAATTTa                            <  1:20227259/35‑1 (MQ=255)
        aGATTAACAAACCTAATGAAAAACAAATGAATTTa                            <  1:13654724/35‑1 (MQ=255)
         gATTAACCAACCTAATGAAAAACAAATGAATTTAg                           <  1:4335241/35‑1 (MQ=255)
         gATTAACCAACCTAATGAAAAACAAATGAATTTAg                           <  1:11783891/35‑1 (MQ=255)
          aTTAACCAACCTAATGAAAAACAAATGAATTTAGc                          >  1:17861580/1‑35 (MQ=255)
          aTTAACCAACCTAATGAAAAACAAATGAATTTAGc                          >  1:18638906/1‑35 (MQ=255)
           ttAACCAACCTAATGAAAAACAAATGAATTTAGcc                         >  1:9589642/1‑35 (MQ=255)
            tAACCAACCTAATGAAAAACAAATGAATTTAGCCa                        >  1:18033457/1‑35 (MQ=255)
            tAACCAACCTAATGAAAAACAAATGAATTTAGCCa                        <  1:4099926/35‑1 (MQ=255)
            tAACCAACCTAATGAAAAACAAATGAATTTAGCCa                        >  1:5393973/1‑35 (MQ=255)
             aaccaaccTAATGAAAAACAAATGAATTTAGCCaa                       <  1:2378093/35‑1 (MQ=255)
              accaaccTAATGAAAAACAAATGAATTTAGCCAAt                      >  1:18782281/1‑35 (MQ=255)
              accaaccTAATGAAAAACAAATGAATTTAGCCAAt                      >  1:705337/1‑35 (MQ=255)
               ccaaccTAATGAAAAACAAATGAATTTAGCCAATc                     <  1:8760463/35‑1 (MQ=255)
               ccaaccTAATGAAAAACAAATGAATTTAGCCAATc                     >  1:4765506/1‑35 (MQ=255)
                caaccTAATGAAAAACAAATGAATTTAGCCAATCa                    <  1:7091555/35‑1 (MQ=255)
                 naccTNNTGAAAAACAAATGAATTTAGCCAATCAt                   <  1:19170350/34‑1 (MQ=255)
                 aaccTAATGAAAAACAAATGAATTTAGCCAATCAt                   >  1:17252225/1‑35 (MQ=255)
                 aaccTAATGAAAAACAAATGAATTTAGCCAATCAt                   >  1:17485801/1‑35 (MQ=255)
                 aaccTAATGAAAAACAAATGAATTTAGCCAATCAt                   <  1:12079630/35‑1 (MQ=255)
                  accTAATGAAAAACAAATGAATTTAGCCAATCAtt                  <  1:3036083/35‑1 (MQ=255)
                  accTAATGAAAAACAAATGAATTTAGCCAATCAtt                  >  1:2242245/1‑35 (MQ=255)
                  accTAATGAAAAACAAATGAATTTAGCCAATCAtt                  <  1:3845987/35‑1 (MQ=255)
                  accTAATGAAAAACAAATGAATTTAGCCAATCAtt                  >  1:18896219/1‑35 (MQ=255)
                  accTAATGAAAAACAAATGAATTTAGCCAATCAtt                  >  1:15485770/1‑35 (MQ=255)
                  accTAATGAAAAACAAATGAATTTAGCCAATCAtt                  <  1:5140183/35‑1 (MQ=255)
                   ccTAATGAAAAACAAATGAATTTAGCCAATCATTa                 >  1:8199749/1‑35 (MQ=255)
                    cTAATGAAAAACAAATTAATTTAGCCAATCATTaa                >  1:18555190/1‑35 (MQ=255)
                    cTAATGAAAAACAAATGAATTTAGCCAATCATTaa                <  1:15591490/35‑1 (MQ=255)
                    cTAATGAAAAACAAATGAATTTAGCCAATCATTaa                >  1:7773551/1‑35 (MQ=255)
                    cTAATGAAAAACAAATGAATTTAGCCAATCATTaa                <  1:200018/35‑1 (MQ=255)
                     tAATGAAAAACAAATGAATTTAGCCAATCATTAAg               <  1:3113894/35‑1 (MQ=255)
                     tAATGAAAAACAAATGAATTTAGCCAATCATTAAg               >  1:14444083/1‑35 (MQ=255)
                     tAATGAAAAACAAATGAATTTAGCCAATCATTAAg               <  1:10348154/35‑1 (MQ=255)
                      aaTGAAAAACAAATGAATTTAGCCAATCATTAAGa              >  1:2989468/1‑35 (MQ=255)
                      aaTGAAAAACAAATGAATTTAGCCAATCATTAAGa              >  1:15258251/1‑35 (MQ=255)
                      aaTGAAAAACAAATGAATTTAGCCAATCATTAAGa              >  1:20575028/1‑35 (MQ=255)
                      aaTGAAAAACAAATGAATTTAGCCAATCATTAAGa              >  1:14437202/1‑35 (MQ=255)
                       aTGAAAAACAAATGAATTTAGCCAATCATTAAGAt             <  1:337944/35‑1 (MQ=255)
                       aTGAAAAACAAATGAATTTAGCCAATCATTAAGAt             >  1:6586390/1‑35 (MQ=255)
                       aTGAAAAACAAATGAATTTAGCCAATCATTAAGAt             >  1:13569927/1‑35 (MQ=255)
                        tGAAAAACAAATGAATTTAGCCAATCATTAAGATa            >  1:5530736/1‑35 (MQ=255)
                        tGAAAAACAAATGAATTTAGCCAATCATTAAGATa            >  1:1840562/1‑35 (MQ=255)
                        tGAAAAACAAATGAATTTAGCCAATCATTAAGATa            >  1:10109527/1‑35 (MQ=255)
                         gAAAAACAAATTAATTTAGCCAATCATTAAGATaa           >  1:1384035/1‑35 (MQ=255)
                         gAAAAACAAATGAATTTAGCCAATCATTAAGATan           <  1:14639433/35‑1 (MQ=255)
                         gAAAAACAAATGAATTTAGCCAATCATTAAGATaa           <  1:12713254/35‑1 (MQ=255)
                          aaaaaCAAATGAATTTAGCCAATCATTAATATaaa          >  1:9344188/1‑35 (MQ=255)
                          aaaaaCAAATGAATTTAGCCAATCATTAAGATaaa          >  1:7271172/1‑35 (MQ=255)
                          aaaaaCAAATGAATTTAGCCAATCATTAAGATaaa          >  1:14130855/1‑35 (MQ=255)
                           aaaaCAAATGAATTTAGCCAATCATTAAGATAAAt         >  1:19300186/1‑35 (MQ=255)
                           aaaaCAAATGAATTTAGCCAATCATTAAGATAAAt         <  1:18204946/35‑1 (MQ=255)
                           aaaaCAAATGAATTTAGCCAATCATTAAGATAAAt         >  1:15061587/1‑35 (MQ=255)
                           aaaaCAAATGAATTTAGCCAATCATTAAGATAAAt         <  1:12335077/35‑1 (MQ=255)
                           aaaaAAAAaaaatttagccaatttgcttaaaagct         >  1:9666375‑M2/1‑8 (MQ=255)
                            aaaCAAATGAATTTAGCCAATCATTAAGATAAATc        >  1:18046655/1‑35 (MQ=255)
                            aaaCAAATGAATTTAGCCAATCATTAAGATAAATc        >  1:17152103/1‑35 (MQ=255)
                            aaaCAAATGAATTTAGCCAATCATTAAGATAAATc        <  1:15875200/35‑1 (MQ=255)
                            aaaCAAATGAATTTAGCCAATCATTAAGATAAATc        >  1:14224404/1‑35 (MQ=255)
                             aaCAAAaaattttagccaatttgcttaaaagctct       >  1:17696788‑M2/1‑6 (MQ=255)
                             aaCAAATGAATTTAGCCAATCATTAAGATAAATCa       <  1:6942335/35‑1 (MQ=255)
                             aaCAAATGAATTTAGCCAATCATTAAGATAAATCa       <  1:16235005/35‑1 (MQ=255)
                             aaCAAATGAATTTAGCCAATCATTAAGATAAATCa       >  1:11300744/1‑35 (MQ=255)
                             aaAAAAaaaatttagccaatttgcttaaaagctct       >  1:280‑M2/1‑6 (MQ=255)
                              aCAAATGAATTTAGCCAATCATTAAGATAAATCAg      >  1:9627659/1‑35 (MQ=255)
                              aCAAATGAATTTAGCCAATCATTAAGATAAATCAg      >  1:11583940/1‑35 (MQ=255)
                              aCAAATGAATTTAGCCAATCATTAAGATAAATCAg      >  1:7956913/1‑35 (MQ=255)
                              aCAAATGAATTTAGCCAATCATTAAGATAAATCAg      <  1:18489462/35‑1 (MQ=255)
                              aCAAATGAATTTAGCCAATCATTAAGATAAATCAg      <  1:19075233/35‑1 (MQ=255)
                              aCAAATGAATTTAGCCAATCATTAAGATAAATCAg      <  1:3310586/35‑1 (MQ=255)
                               cAAATGAATTTAGCCAATCATTAAGATAAATCAGc     <  1:9769814/35‑1 (MQ=255)
                               cAAATGAATTTAGCCAATCATTAAGATAAATCAGc     >  1:6609080/1‑35 (MQ=255)
                               cAAATGAATTTAGCCAATCATTAAGATAAATCAGc     <  1:10039708/35‑1 (MQ=255)
                                aaaTGAATTTAGCCAATCATTAAGATAAATCAGCg    <  1:643286/35‑1 (MQ=255)
                                aaaTGAATTTAGCCAATCATTAAGATAAATCAGCg    >  1:18237812/1‑35 (MQ=255)
                                aaaTGAATTTAGCCAATCATTAAGATAAATCAGCg    >  1:16196435/1‑35 (MQ=255)
                                aaaTGAATTTAGCCAATCATTAAGATAAATCAGCg    <  1:11169099/35‑1 (MQ=255)
                                 aaTGAATTTAGCCAATCATTAAGATAAATCAGCGa   <  1:7742006/35‑1 (MQ=255)
                                 aaTGAATTTAGCCAATCATTAAGATAAATCAGCGa   <  1:7878493/35‑1 (MQ=255)
                                 aaTGAATTTAGCCAATCATTAAGATAAATCAGCGa   >  1:12149825/1‑35 (MQ=255)
                                 aaTGAATTTAGCCAATCATTAAGATAAATCAGCGa   >  1:10551623/1‑35 (MQ=255)
                                  aTGAATTTAGCCAATCATTAAGATAAATCAGCGAt  <  1:6154774/35‑1 (MQ=255)
                                  aTGAATTTAGCCAATCATTAAGATAAATCAGCGAt  <  1:546041/35‑1 (MQ=255)
                                  aTGAATTTAGCCAATCATTAAGATAAATCAGCGAt  >  1:150107/1‑35 (MQ=255)
                                  |                                  
AACAAAATAGATTAACCAACCTAATGAAAAACAAATGAATTTAGCCAATCATTAAGATAAATCAGCGAT  >  REL606/2780560‑2780628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.