New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 4551446 | NA (NA) | 9 (0.090) | 8/46 | NT | 7.0% | noncoding (768/768 nt) | IS1 | repeat region |
? | REL606 | 4560889 = | 119 (1.210) | coding (135/1590 nt) | hsdM | DNA methylase M |
Only 100 of 188 total aligned reads displayed.
CCCAGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCTTTACACATTTTCAAAAACAGCA > REL606/4560855‑4560923 | cccAGCGGTAGCCTTCCGGCAGGTATTCCGCTTcc < 1:13139724/35‑1 (MQ=255) cccAGCGGTAGCCTTCCGGCAGGGATTTCGCTTcc > 1:17536439/1‑35 (MQ=25) ccAGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCt < 1:15633433/35‑1 (MQ=255) ataaaacactatcaataagttggagtcattaccCt > 1:12358203‑M2/34‑35 (MQ=255) cAGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTg < 1:10076281/35‑1 (MQ=255) cAGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTg < 1:7994652/35‑1 (MQ=255) cAGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTg < 1:16879629/35‑1 (MQ=255) cAGCGGTAGCCTTCCGGCAGGTATTCCGCTTACTg < 1:7395792/35‑1 (MQ=255) aGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTGt < 1:1550158/35‑1 (MQ=255) gCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTGTc < 1:12047656/35‑1 (MQ=255) gCGGTAGCCTTCCGGCAGGTATTCCACTTCCTGTc < 1:19588406/35‑1 (MQ=255) cGGTAGCCTTCCGGCAGGTATTCCGCTTTCTGTcc > 1:15243050/1‑35 (MQ=255) cGGTAGCCTTCCGGCAGGTATTCCGCTTCCTGTcc < 1:8087181/35‑1 (MQ=255) cGGTAGCCTTCCGGCAGGTATTCCGCTTCCTGTcc < 1:12587204/35‑1 (MQ=255) ggTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCg < 1:19090281/35‑1 (MQ=255) ggTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCg < 1:2687459/35‑1 (MQ=255) ggTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCg < 1:3298934/35‑1 (MQ=255) gTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCgg < 1:11748434/35‑1 (MQ=255) gTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCgg < 1:1623429/35‑1 (MQ=255) gTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCgg > 1:10421116/1‑35 (MQ=255) gTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCgg < 1:14255678/35‑1 (MQ=255) tAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGt < 1:667131/35‑1 (MQ=255) tAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGt > 1:14118628/1‑35 (MQ=255) actatcaataagttggagtcattaccCTGTCCGGt < 1:13688259‑M2/9‑1 (MQ=255) tctcTTCCGGCAGGTATTCCGCTTCCTGTCCGGtt < 1:11930387/32‑1 (MQ=255) aGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGtt > 1:18405000/1‑35 (MQ=255) aGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGtt < 1:7735935/35‑1 (MQ=255) aGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGtg > 1:13061199/1‑34 (MQ=255) gCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGttt < 1:20111415/35‑1 (MQ=255) gCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGttt < 1:10358877/35‑1 (MQ=255) ccTTCCGGCAGGTATTCCGCTTCCTGTCCGGtggt < 1:4900186/35‑4 (MQ=255) cTTCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCt < 1:17265814/35‑1 (MQ=255) cTTCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCt < 1:5128695/35‑1 (MQ=255) cTTCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCt > 1:10573702/1‑35 (MQ=255) ttCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCtt < 1:17548450/35‑1 (MQ=255) ttCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCtt < 1:5008030/35‑1 (MQ=255) ttCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCtt > 1:12715128/1‑35 (MQ=255) ttCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCtt < 1:9923121/35‑1 (MQ=255) caataagttggagtcattaccCTGTCCGGTTTCtt < 1:20232665‑M2/14‑1 (MQ=255) tCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCttt > 1:7782928/1‑35 (MQ=255) tCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCttt > 1:14815320/1‑35 (MQ=255) tCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCttt > 1:3618233/1‑35 (MQ=255) tCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCttt > 1:8956453/1‑35 (MQ=255) ccGGCAGGTATTCCGCTTCCTGTCCGGTTTCTTTa < 1:5763192/35‑1 (MQ=255) ccGGCAGGGATTCCGCTTCCTGTCCGGTTTCTTTa > 1:12552684/1‑35 (MQ=255) cGGCAGGTATTCCGCTTCCTGTCCGGTTTCTTTac < 1:9042006/35‑1 (MQ=255) cGGCAGGGATTCCGCTTCCTGTCCGGTTTCTTTac > 1:20459001/1‑35 (MQ=255) cGGCAGGGATTCCGCTTCCTGTCCGGTTTCTTTac > 1:19724767/1‑35 (MQ=255) cGGCAGGGATTCCGCTTCCTGTCCGGTTTCTTTac > 1:4502764/1‑35 (MQ=255) ggCAGGTATTCCGCTTCCTGTCCGGTTTCTTTaca < 1:3539206/35‑1 (MQ=255) gCAGGTATTCCGCTTCCTGTCCGGTTTCTTTacac > 1:17004588/1‑35 (MQ=255) gttggagtcattaccCTGTCCGGTTTCTTTAcaca < 1:2175040‑M2/20‑1 (MQ=255) cAGGTATTCCGCTTCCTGTCCGGTTTCTTTAcaca > 1:14708253/1‑35 (MQ=255) cAGGTATTCCGCTTCCTGTCCGGTTTCTTTAcaca < 1:6966117/35‑1 (MQ=255) aGGTATTCCGCTTCCTGTCCGGTTTCTTTACACAt > 1:8197896/1‑35 (MQ=255) aGGTATTCCGCTTCCTGTCCGGTTTCTTTACACAt < 1:1878976/35‑1 (MQ=255) aGGTATTCCGCTTCCTGTCCGGTTTCTTTACACAt > 1:19005500/1‑35 (MQ=255) aGGTATTCCGCTTCCTGTCCGGTTTCTTTACACAt < 1:12302379/35‑1 (MQ=255) aGGTATTCCGCTTCCTGTCCGGTTTCTTTACACAt < 1:6721119/35‑1 (MQ=255) ggTATTCCGCTTCCTGTCCGGTTTCTTTACACAtt > 1:17009641/1‑35 (MQ=255) ggagtcattaccCTGTCCGGTTTCTTTACACAttt > 1:2276032‑M2/13‑35 (MQ=255) gTATTCCGCTTCCTGTCCGGTTTCTTTACACAttt < 1:14567237/35‑1 (MQ=255) gTATTCAGCTTCCTGTCCGGTTTCTTTACACAttt < 1:17673231/35‑1 (MQ=255) tATTCCGCTTCCTGTCCGGTTTCTTTACACAtttt < 1:19542935/35‑1 (MQ=255) tATTCCGCTTCCTGTCCGGTTTCTTTACACAtttt > 1:16793515/1‑35 (MQ=255) aTTCCGCTTCCTGTCCGGTTTCTTTACACATTTTc > 1:9744970/1‑35 (MQ=255) aTTCCGCTTCCTGTCCGGTTTCTTTACACATTTTc < 1:17803123/35‑1 (MQ=255) aTTCCGCTTCCTGTCCGGTTTCTTTACACATTTTc > 1:4601939/1‑35 (MQ=255) ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa > 1:13474857/1‑35 (MQ=255) ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa > 1:12932278/1‑35 (MQ=255) ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa < 1:1060490/35‑1 (MQ=255) ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa < 1:9544408/35‑1 (MQ=255) ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa > 1:10293675/1‑35 (MQ=255) ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa < 1:17209901/35‑1 (MQ=255) ttCCGCTTCCTGTCCGGTTTCTTTACACATTTTCa > 1:18721693/1‑35 (MQ=255) tCCGCTTCCTGTCCGGTTTCTTTACACATTTTCaa > 1:16455572/1‑35 (MQ=255) ccGCTTCCTGTCCGGTTTCTTTACACATTTTCaaa > 1:17165955/1‑35 (MQ=255) ccGCTTCCTGTCCGGTTTCTTTACACATTTTCaaa < 1:6269229/35‑1 (MQ=255) ccGCTTCCTGTCCGGTTTCTTTACACATTTTCaaa > 1:6502127/1‑35 (MQ=255) ccGCTTCCTGTCCGGTTTCTTTACACATTTTCaaa > 1:925810/1‑35 (MQ=255) gCTTCCTGTCCGGTTTCTTTACACATTTTCaaaaa < 1:13522826/35‑1 (MQ=255) gCTTCCTGTCCGGTTTCTTTACACATTTTCaaaaa > 1:1013048/1‑35 (MQ=255) gCTTCCTGTCCGGTTTCTTTACACATTTTCaaaaa > 1:10715055/1‑35 (MQ=255) gCTTCCTGTCCGGTTTCTTTACACATTTTCaaaaa > 1:13945483/1‑35 (MQ=255) cTTCCTGTCCGGTTTCTTTACACATTTTCAAAAAc < 1:12410853/35‑1 (MQ=255) cTTCCTGTCCGGTTTCTTTACACATTTTCAAAAAc > 1:5200468/1‑35 (MQ=255) cTTCCTGTCCGGTTTCTTTACACATTTTCAAAAAc < 1:11617000/35‑1 (MQ=255) cTTCCTGTCCGGTTTCTTTACACATTTTCAAAAAc < 1:8599988/35‑1 (MQ=255) ttCCTGTCCGGTTTCTTTACACATTTTCAAAAAca > 1:14660883/1‑35 (MQ=255) ttCCTGTCCGGTTTCTTTACACATTTTCAAAAAca > 1:5605045/1‑35 (MQ=255) ttCCTGTCCGGTTTCTTTACACATTTTCAAAAAca < 1:5131704/35‑1 (MQ=255) ttCCTGTCCGGTTTCTTTACACATTTTCAAAAAca < 1:3314271/35‑1 (MQ=255) ttCCTGTCCGGTTTCTTTACACATTTTCAAAAAca > 1:2523842/1‑35 (MQ=255) ttCCTGTCCGGTTTCTTTACACATTTCCAAAAAca > 1:3325860/1‑35 (MQ=255) tCCTGTCCGGTTTCTTTACACATTTTCAAAAAcag < 1:14015739/35‑1 (MQ=255) tCCTGTCCGGTTTCTTTACACATTTTCAAAAAcag < 1:617825/35‑1 (MQ=255) cCTGTCCGGTTTCTTTACACATTTTCAAAAACAGc > 1:6861336‑M2/2‑35 (MQ=255) cTGTCCGGTTTCTTTACACATTTTCAAAAAcagca < 1:16400980/35‑1 (MQ=255) cTGTCCGGTTTCTTTACACATTTTCAAAAAcagca < 1:121643/35‑1 (MQ=255) cTGTCCGGTTTCTTTACACATTTTCAAAAAcagca > 1:20082852/1‑35 (MQ=255) | CCCAGCGGTAGCCTTCCGGCAGGTATTCCGCTTCCTGTCCGGTTTCTTTACACATTTTCAAAAACAGCA > REL606/4560855‑4560923 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |