New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2312280 =75 (0.730)5 (0.050) 3/44 NT 9.1% intergenic (‑147/‑143) ais/yfbE hypothetical protein/uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent
?REL606 = 4042610 31 (0.330)intergenic (‑57/+10) yshA/yihO predicted outer membrane porin L/predited transporter

Only 100 of 143 total aligned reads displayed.

ATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTC  >  REL606/2312246‑2312313
                                  |                                 
ggaggccgccacccaccaggatggaaatagcggct                                   <  1:19414125‑M1/1‑1 (MQ=255)
ggaggccgccacccaccaggatggaaatagcggct                                   <  1:7491178‑M1/1‑1 (MQ=255)
ggaggccgccacccaccaggatggaaatagcggct                                   >  1:6664507‑M1/35‑35 (MQ=255)
aTGCCTCAAAATTTTGCCAAATGCAAAGCCTAAAt                                   >  1:16277357/1‑35 (MQ=255)
aTGCCTCAAAATTTTGCCAAATGCAAAGCCTAAAt                                   <  1:13360611/35‑1 (MQ=255)
aTGCCTCAAAATTTTGCCAAATGCAAAGCCTAAAt                                   <  1:7349449/35‑1 (MQ=255)
aTGCCCCAAAATTTTGCCAAATGCAAAGCCTAAAt                                   <  1:11132232/35‑1 (MQ=255)
 tGCCTCAAAATTTTGCCAAATGCAAAGCGTAAATa                                  <  1:12854021/35‑1 (MQ=255)
 tGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATa                                  >  1:8410562/1‑35 (MQ=255)
 tGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATa                                  <  1:6013454/35‑1 (MQ=255)
 tGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATa                                  <  1:17101304/35‑1 (MQ=255)
 gatgccgccacccaccaggatggaaatagcggcTa                                  <  1:3986566‑M1/2‑1 (MQ=255)
 gaggccgccacccaccagtatggaaatagcggcTa                                  <  1:4657701‑M1/2‑1 (MQ=255)
 gaggccgccacccaccaggatggaaatagcggcTa                                  <  1:772473‑M1/2‑1 (MQ=255)
 gaggccgccacccaccaggatggaaatagcggcTa                                  >  1:8122389‑M1/34‑35 (MQ=255)
 gaggccgccacccaccaggatggaaatagcggcTa                                  <  1:17172086‑M1/2‑1 (MQ=255)
 gagcccgccacccaccaggatggaaatagcggcTa                                  >  1:3580627‑M1/34‑35 (MQ=255)
  gCCTCAAAATTTTGCCAAATGCAAAGCCTAAATaa                                 <  1:18242514/35‑1 (MQ=255)
  gCCTCAAAATTTTGCCAAATGCAAAGCCTAAATaa                                 <  1:15819314/35‑1 (MQ=255)
  gCCTCAAAATTTTGCCAAATGCAAAGCCTAAATaa                                 <  1:12388730/35‑1 (MQ=255)
  gCCTCAAAATTTTGCCAAATGCAAAGCCTAAATaa                                 >  1:5209629/1‑35 (MQ=255)
  gCCTCAAAATTTTGCCAAATGCAAAGCCTAAATaa                                 <  1:3096713/35‑1 (MQ=255)
  aggccgccacccaccaggatggaaatagcggcTaa                                 <  1:15372953‑M1/3‑1 (MQ=255)
  aggccgccacccaccaggatggaaatagcggcTaa                                 <  1:9857231‑M1/3‑1 (MQ=255)
  aggccgccacccaccaggatggaaatagcggcTaa                                 <  1:13918176‑M1/3‑1 (MQ=255)
   ggccgccacccaccaggatggaaatagcggctaaa                                <  1:14195482‑M1/4‑2 (MQ=255)
   ggccgccacccaccaggatggaaatagcggctaaa                                <  1:1902604‑M1/4‑2 (MQ=255)
   ccTCAAAATTTTGCCAAATGCAAAGCCTAAATAAg                                <  1:8178056/35‑1 (MQ=255)
   ccTCAAAATTTTGCCAAATGCAAAGCCTAAATAAg                                <  1:1852143/35‑1 (MQ=255)
    cTCAAAATTTTGCCGAATGCAAAGCCTAAATAAGa                               <  1:6227644/35‑1 (MQ=255)
    cTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGa                               >  1:9403679/1‑35 (MQ=255)
    cTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGa                               <  1:9223405/35‑1 (MQ=255)
    cTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGa                               <  1:8890937/35‑1 (MQ=255)
    cTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGa                               <  1:6554984/35‑1 (MQ=255)
    cTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGa                               <  1:15234319/35‑1 (MQ=255)
       aaaaTTTTGCCAAATGCAAAGCCTAAATAAGaaaa                            <  1:17761119/35‑1 (MQ=255)
       aaaaTTTTGCCAAATGCAAAGCCTAAATAAGaaaa                            <  1:6087211/35‑1 (MQ=255)
        ccacccaccaggatggaaatagcggcTAAAaaaaa                           <  1:13869675‑M1/9‑1 (MQ=255)
        aaaTTTTGCCAAATGCAAAGCCTAAATAAGaaaaa                           >  1:8633910/1‑35 (MQ=255)
        aaaTTTTGCCAAATGCAAAGCCTAAATAAGaaaaa                           <  1:8658487/35‑1 (MQ=255)
         cacccaccaggatggaaatagcggcTAAAaaaaaa                          <  1:17227563‑M1/10‑1 (MQ=255)
         aaTTTTGCCAAATGCAAAGCCTAAATAAGaaaaaa                          <  1:13626909/35‑1 (MQ=255)
          acccaccaggatggaaatagcggcTAAaaaaaaaa                         <  1:8886485‑M1/11‑2 (MQ=255)
          aTTTTGCCAAATGCAAAGCCTAAATAAGAAAAAat                         >  1:1411465/1‑35 (MQ=255)
          aTTTTGCCAAATGCAAAGCCTAAATAAGAAAAAat                         <  1:6952202/35‑1 (MQ=255)
          aTTTTGCCAAATGCAAAGCCTAAATAAGAAAAAat                         >  1:6680100/1‑35 (MQ=255)
           ttttGCCAAATGCAAAGCCTAAATAAGAAAAAata                        <  1:6741809/35‑1 (MQ=255)
           ttttGCCAAATGCAAAGCCTAAATAAGAAAAAata                        >  1:1297865/1‑35 (MQ=255)
            tttGCCAAATGCAAAGCCTAAATAAGAAAAAatat                       <  1:13476130/35‑1 (MQ=255)
             ttGCCAAATGCAAAGCCTAAATAAGAAAAAAtata                      >  1:18580007/1‑35 (MQ=255)
              tGCCAAATGCAAAGCCTAAATAAGAAAAAATATaa                     <  1:14666025/35‑1 (MQ=255)
              tGCCAAATGCAAAGCCTAAATAAGAAAAAATATaa                     <  1:2274170/35‑1 (MQ=255)
               gCCAAATGCAAAGCCTAAATAAGAAAAAATATaaa                    <  1:5190412/35‑1 (MQ=255)
               gCCAAATGCAAAGCCTAAATAAGAAAAAATATaaa                    <  1:4766105/35‑1 (MQ=255)
               gCCAAATGCAAAGCCTAAATAAGAAAAAATATaaa                    <  1:10142246/35‑1 (MQ=255)
               gCCAAATGCAAAGCCTAAATAAGAAAAAATATaaa                    <  1:197576/35‑1 (MQ=255)
               gCCAAATGCAAAGCCTAAATAAGAAAAAATATaaa                    <  1:16441711/35‑1 (MQ=255)
               gCCAAATGCAAAGCCTAAATAAGAAAAAATATaaa                    <  1:17940254/35‑1 (MQ=255)
                ccAAATGCAAAGCCTAAATAAGAAAAAATATaaaa                   >  1:10196513/1‑35 (MQ=255)
                ccAAATGCAAAGCCTAAATAAGAAAAAATATaaaa                   <  1:14567041/35‑1 (MQ=255)
                ccAAATGCAAAGCCTAAATAAGAAAAAATATaaaa                   >  1:19678959/1‑35 (MQ=255)
                ccAAATGCAAAGCCTAAATAAGAAAAAATATaaaa                   >  1:6609837/1‑35 (MQ=255)
                 cAAATGCAAAGCCTAAATAAGAAAAAATATaaaaa                  <  1:19791507/35‑1 (MQ=255)
                 cAAATGCAAAGCCTAAATAAGAAAAAATATaaaaa                  <  1:7962007/35‑1 (MQ=255)
                 cAAATGCAAAGCCTAAATAAGAAAAAATATaaaaa                  <  1:5056816/35‑1 (MQ=255)
                 aggatggaaatagcggcTAAAAAAAAATATaaaaa                  <  1:2680590‑M1/18‑1 (MQ=255)
                  aaaTGCAAAGCCTAAATAAGAAAAAATATAAAAAt                 >  1:16679718/1‑35 (MQ=255)
                   aaTGCAAAGCCTAAATAAGAAAAAATATAAAAAtt                <  1:20507109/35‑1 (MQ=255)
                   aaTGCAAAGCCTAAATAAGAAAAAATATAAAAAtt                >  1:19654163/1‑35 (MQ=255)
                    aTGCAAAGCCTAAATAAGAAAAAATATAAAAAttt               <  1:3143081/35‑1 (MQ=255)
                    aTGCAAAGCCTAAATAAGAAAAAATATAAAAAttt               <  1:5975313/35‑1 (MQ=255)
                     tGCAAAGCCTAAATAAGAAAAAATATAAAAATTTc              >  1:4960216/1‑35 (MQ=255)
                      gCAAAGCCTAAATAAGAAAAAATATAAAAATTTCa             <  1:8301050/35‑1 (MQ=255)
                      gCAAAGCCTAAATAAGAAAAAATATAAAAATTTCa             <  1:19526938/35‑1 (MQ=255)
                        aaaGCCTAAATAAGAAAAAATATAAAAATTTCAat           <  1:18414358/35‑1 (MQ=255)
                        aaaGCCTAAATAAGAAAAAATATAAAAATTTCAat           >  1:15236394/1‑35 (MQ=255)
                         aaGCCTAAATAAGAAAAAATATAAAAATTTCAata          <  1:18921318/35‑1 (MQ=255)
                         aaGCCTAAATAAGAAAAAATATAAAAATTTCAata          >  1:17531508/1‑35 (MQ=255)
                          aGCCTAAATAAGAAAAAATATAAAAATTTCAatat         <  1:14525956/35‑1 (MQ=255)
                          aGCCTAAATAAGAAAAAATATAAAAATTTCAatat         >  1:7871596/1‑35 (MQ=255)
                          aGCCTAAATAAGAAAAAATATAAAAATTTCAatat         <  1:15760062/35‑1 (MQ=255)
                          aGCCTAAATAAGAAAAATATAAAAATTTCAATAtt        <  1:17770475/35‑1 (MQ=25)
                           gCCTAAATAAGAAAAAATATAAAAATTTCAATAtt        <  1:18292557/35‑1 (MQ=255)
                           gCCTAAATAAGAAAAAATATAAAAATTTCAATAtt        <  1:19061476/35‑1 (MQ=255)
                           gCCTAAATAAGAAAAAATATAAAAATTTCAATAtt        >  1:1188242/1‑35 (MQ=255)
                           gCCTAAATAAGAAAAAATATAAAAATTTCAATAtt        >  1:12175951/1‑35 (MQ=255)
                            ccTAAATAAGAAAAAATATAAAAATTTCAATAttt       <  1:4407475/35‑1 (MQ=255)
                             cTAAATAAGAAAAAATATAAAAATTTCAATATTTa      <  1:5807479/35‑1 (MQ=255)
                             cTAAATAAGAAAAAATATAAAAATTTCAATATTTa      <  1:17455247/35‑1 (MQ=255)
                             cTAAATAAGAAAAAATATAAAAATTTCAATATTTa      >  1:398455/1‑35 (MQ=255)
                             cTAAATAAGAAAAAATATAAAAATTTCAATATTTa      >  1:3349786/1‑35 (MQ=255)
                              tAAATAAGAAAAAATATAAAAATTTCAATATTTAc     <  1:9743886/35‑1 (MQ=255)
                              tAAATAAGAAAAAATATAAAAATTTCAATATTTAc     <  1:14245/35‑1 (MQ=255)
                               aaaTAAGAAAAAATATAAAAATTTCAATATTTACg    <  1:12502630/35‑1 (MQ=255)
                               aaaTAAGAAAAAATATAAAAATTTCAATATTTACg    <  1:8562525/35‑1 (MQ=255)
                               aaaTAAGAAAAAATATAAAAATTTCAATATTTACg    >  1:10278235/1‑35 (MQ=255)
                                aaTAAGAAAAAATATAAAAATTTCAATATTTACGt   >  1:7808042/1‑35 (MQ=255)
                                aaTAAGAAAAAATATAAAAATTTCAATATTTACGt   <  1:18636656/35‑1 (MQ=255)
                                 aTAAGAAAAAATATAAAAATTTCAATATTTACGTc  >  1:11140282/1‑35 (MQ=255)
                                 aTAAGAAAAAATATAAAAATTTCAATATTTACGTc  <  1:16849172/35‑1 (MQ=255)
                                  |                                 
ATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTC  >  REL606/2312246‑2312313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.