New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 98960956 (0.540)13 (0.160) 4/38 NT 32.0% coding (766/894 nt) ycbJ hypothetical protein
?REL606 2795469 = 11 (0.140)coding (831/873 nt) ygcG hypothetical protein

CTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCC  >  REL606/2795435‑2795503
                                  |                                  
ctctggagttacctgcaacgcgcgccagtggcggg                                    >  1:10481470‑M2/35‑35 (MQ=255)
cTGGAGGCTCAGATAGCGGCGGGGTTTGCGGCggg                                    >  1:17715357/1‑35 (MQ=25)
cTGGAGGCTCAGATAGCGGCGGATTTAGCGGCggg                                    <  1:7980488/35‑1 (MQ=255)
cTGGAGGCTCAGATAGCGGCGGATTTAGCGGCggg                                    <  1:14738927/35‑1 (MQ=255)
cTGGAGGCTCAGATAGCGGCGGATTTAGCGGCggg                                    <  1:15652431/35‑1 (MQ=255)
 tctggagttacctgcaacgcgcgccagtggcgggg                                   >  1:7944263‑M2/34‑35 (MQ=255)
 tctggagttacctgcaacgcgcgccagtggcgggg                                   >  1:17102860‑M2/34‑35 (MQ=255)
 tGGAGGCTCAGATAGCGGCGGATTTAGCGGCgggg                                   <  1:8528902/35‑1 (MQ=255)
 tGGAGGCTCAGATAGCGGCGGATTTAGCGGCgggg                                   <  1:20272686/35‑1 (MQ=255)
 tGGAGGCTCAGATAGCGGCGGATTTAGCGGCgggg                                   <  1:7312846/35‑1 (MQ=255)
 tGGAGGCTCAGATAGCGGCGGATTTAGCGGCgggg                                   <  1:18805991/35‑1 (MQ=255)
  ggAGGCTCAGATAGCGGCGGATTTAGCGGCggggg                                  <  1:5685321/35‑1 (MQ=255)
  ggAGGCTCAGATAGCGGCGGATTTAGCGGCggggg                                  <  1:7480202/35‑1 (MQ=255)
  ctggagttaccttcaacgcgcgccagtggcggggg                                  >  1:4592357‑M2/33‑35 (MQ=255)
  ctggagttacctgcaacgcgcgccagtggcggggg                                  >  1:8718294‑M2/33‑35 (MQ=255)
   tggagttacgtgcaacgcgcgccagtggcgggggg                                 >  1:14687469‑M2/32‑34 (MQ=255)
   gAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGc                                 <  1:3743463/35‑1 (MQ=255)
    ggagttacctgcaacgcgcgccagtggcggGGgca                                >  1:13625183‑M2/31‑34 (MQ=255)
    ggagttacctgcaacgcgcgccagtggcggGGGCg                                >  1:3193225‑M2/31‑35 (MQ=255)
    aGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCg                                <  1:2714014/35‑1 (MQ=255)
    aGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCg                                <  1:754398/35‑1 (MQ=255)
    aGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCg                                <  1:13749594/35‑1 (MQ=255)
     gagttacctgcaacgcgcgccagtggcgggggagt                               >  1:17837103‑M2/30‑32 (MQ=255)
     gagttacctgcaacgcgcgccagtggcggGGGcgt                               >  1:20112009‑M2/30‑34 (MQ=255)
     gagttacctgcaacgcgcgccagtggcggGGGCgg                               >  1:256790‑M2/30‑35 (MQ=255)
     gagttacctgcaacgcgcgccagtggcggGGGCgg                               >  1:3733318‑M2/30‑35 (MQ=255)
      agttacctgcaacgcgcgccagtggcggGGGGGGt                              >  1:209421‑M2/29‑35 (MQ=255)
      agttacctgcaacgcgcgccagtggcggGGGCGGt                              >  1:9407853‑M2/29‑35 (MQ=255)
       gttacctgcaacgcgcgccagtggcggGGGGGgtc                             >  1:703186‑M2/28‑34 (MQ=255)
       gttacctgcaacgcgcgccagtggcggGGGCGgtg                             >  1:16866409‑M2/28‑34 (MQ=255)
       gttacctgcaacgcgcgccagtggcggGGGCGgtc                             >  1:18471756‑M2/28‑34 (MQ=255)
       gttacctgcaacgcgcgccagtggcggGGGCGgtc                             >  1:17744746‑M2/28‑34 (MQ=255)
       gttacctgcaacgcgcgccagtggcggGGGCGGtt                             >  1:2566668‑M2/28‑35 (MQ=255)
       cTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGtt                             <  1:4848318/35‑1 (MQ=255)
       cTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGtt                             <  1:9385236/35‑1 (MQ=255)
        ttacctgcaacgcgcgccagtggcggGGGCggtcc                            >  1:17778729‑M2/27‑33 (MQ=255)
        ttacctgcaacgcgcgccagtggcggGGGCggtca                            >  1:1318561‑M2/27‑33 (MQ=255)
        ttacctgcaacgcgcgccagtggcggGGGCGGttc                            >  1:6223488‑M2/27‑35 (MQ=255)
         cAGATAGCGGCGGATTTAGCGGCGGGGGCGGttct                           <  1:2307446/35‑1 (MQ=255)
         cAGATAGCGGCGGATTTAGCGGCGGGGGCGGttct                           <  1:19226093/35‑1 (MQ=255)
          acctgcaacgcgcgccagtggcggGGTCGgttctc                          >  1:11433879‑M2/25‑34 (MQ=255)
           gATAGCGGCGGATTTAGCGGCGGGGGCGGttcttc                         <  1:5306911/35‑1 (MQ=255)
              aGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTgg                      <  1:7751288/35‑1 (MQ=255)
               gcggcgGATTTAGCGGCGGGGGCGGTTCTTCTGGa                     <  1:11819682/35‑1 (MQ=255)
                   cggATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTg                 <  1:55671/35‑1 (MQ=255)
                    ggATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTgg                <  1:7594442/35‑1 (MQ=255)
                      aTTTAGCGGCGGGGGCGGTTCCTCTGGAGGTggcg              <  1:9499221/35‑1 (MQ=255)
                       tttAGCGGCGGGGGCGGTTCTTCTGGAGGTggcgg             <  1:12921552/35‑1 (MQ=255)
                        ttAGCGGCGGGGGCGGTTCTTCTGGAGGTggcggc            <  1:9236893/35‑1 (MQ=255)
                          aGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGgcgc          <  1:6574039/35‑1 (MQ=255)
                            cggcgtGGGCGGTTCTTCTGGAGGTGGCGGCGCAt        <  1:1241056/35‑1 (MQ=255)
                            cggcggGGGCGGTTCTTCTGGAGGTGGCGGCGCAt        <  1:115498/35‑1 (MQ=255)
                            cggcggGGGCGGTTCTTCTGGAGGTGGCGGCGCAt        <  1:17202731/35‑1 (MQ=255)
                            cggcggGGGCGGTTCTTCTGGAGGTGGCGGCGCAt        <  1:19009898/35‑1 (MQ=255)
                             tgcggGGGCGGTTATTCTGGAGGTGGCGGCGCATc       <  1:11993433‑M2/30‑1 (MQ=255)
                              gcggGGGCGGTTCTTCTGGAGGTGGCGGCGCATcc      <  1:15607195‑M2/31‑1 (MQ=255)
                              gcggGGGCGGTTCTTCTGGAGGTGGCGGCGCATcc      <  1:7857409‑M2/31‑1 (MQ=255)
                               cggGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCg     <  1:17137562‑M2/32‑1 (MQ=255)
                               cggGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCg     <  1:3707507‑M2/32‑1 (MQ=255)
                                ggGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCgg    <  1:9939635‑M2/33‑1 (MQ=255)
                                ggGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCgg    <  1:2422434‑M2/33‑1 (MQ=255)
                                 gGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGc   <  1:15429025‑M2/34‑1 (MQ=255)
                                  gggCGGTTCTTCTGGAGGTGGCGGCGCATCCGGcc  <  1:9146515/35‑1 (MQ=255)
                                  gggCGGTTCTTCTGGAGGTGGCGGCGCATCCGGcc  <  1:13241250/35‑1 (MQ=255)
                                  gggCGGTTCTTCTGGAGGTGGCGGCGCATCCGGcc  <  1:18302770/35‑1 (MQ=255)
                                  gggCGGTTCTTCTGGAGGTGGCGGCGCATCCGGcc  <  1:18586092/35‑1 (MQ=255)
                                  |                                  
CTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCC  >  REL606/2795435‑2795503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.