New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1157306 = | 35 (0.340) | 4 (0.050) | 4/38 | NT | 11.3% | coding (1631/3186 nt) | rne | fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein |
? | REL606 | = 1452435 | 35 (0.430) | intergenic (‑244/‑14) | acpD/hrpA | acyl carrier protein phosphodiesterase/ATP‑dependent helicase |
CAACAAAAATTGACCTTTACGGCCTTGCAGCAGCGGCTGGATTCGCTGATGCTGCGCGACAGACTGCGT > REL606/1452401‑1452469 | caacaaAAATTGACCTTTACGGCCTTGCAGCAGCg < 1:4949744/35‑1 (MQ=255) caacaaAAATTGACCTTTACGGCCTTGCAGCAGCg < 1:3453073/35‑1 (MQ=255) caacaaAAATTGACCTTTACGGCCTTGCAGCAGCg > 1:17077191/1‑35 (MQ=255) caacaaAAATTGACCTTTACGGCCTTGCAGCAGCg < 1:17229373/35‑1 (MQ=255) aacaaAAATTGACCTTTACGGCCTTGCAGCAGCga > 1:15430362/1‑34 (MQ=255) aacaaAAATTGACCTTTACGGCCTTGCAGCAGCGg < 1:18406681‑M2/35‑2 (MQ=255) aacaaAAATTGACCTTTACGGCCTTGCAGCAGCGg > 1:5939704‑M2/1‑34 (MQ=255) aacaaAAATTGACCTTTACGGCCTTGCAGCAGCGg < 1:7121499‑M2/35‑2 (MQ=255) aacaaAAATTGACCTTTACGGCCTTGCAGCAGCGg < 1:11566845‑M2/35‑2 (MQ=255) aacaaAAATTGACCTTTACGGCCTTGCAGCAGCGg > 1:19163935‑M2/1‑34 (MQ=255) aacaaAAATTGACCTTTACGGCCTTGCAGAAGCGg < 1:6379086‑M2/35‑2 (MQ=255) acaaAAATTGACCTTTACGGCCTTGCAGCAGCGgg < 1:15746550‑M2/35‑3 (MQ=255) acaaAAATTGACCTTTACGGCCTTGCAGCAGCGgc < 1:11480904‑M2/35‑3 (MQ=255) acaaAAATTGACCTTTACGGCCTTGCAGCAGCGgc > 1:1735460‑M2/1‑33 (MQ=255) caaAAATTGACCTTTACGGCCTTGCAGCAGCGgct > 1:6516239‑M2/1‑32 (MQ=255) aaaaaTTGACCTTTACGGCCTTGCAGCAGCGggtg < 1:3891892‑M2/35‑5 (MQ=255) aaaaaTTGACCTTTACGGCCTTGCAGCAGCGgctg > 1:18472557‑M2/1‑31 (MQ=255) aaaaTTGACCTTTACGGCCTTGCAGCAGCGgctgg < 1:3459593‑M2/35‑6 (MQ=255) aaaaTTGACCTTTACGGCCTTGCAGCAGCGgctgg < 1:8519525‑M2/35‑6 (MQ=255) aaaaTTGACCTTTACGGCCTTGCAGCAGCGgctgg < 1:5563369‑M2/35‑6 (MQ=255) aaaaTTGACCTTTAAGGCCTTGCAGCAGCGgctgg > 1:3542467‑M2/1‑30 (MQ=255) aaaTTGACCTTTACGGCCTTGCAGCAGCGgctggg < 1:20085705‑M2/35‑7 (MQ=255) aaaTTGACCTTTACGGCCTTGCAGCAGCGgctggg < 1:10837843‑M2/35‑7 (MQ=255) aaTTGACCTTTACGGCCTTGCAGCAGCGgctgggg < 1:11749525‑M2/35‑8 (MQ=255) aaTTGACCTTTACGGCCTTGCAGCAGCGgctgggg < 1:8571796‑M2/35‑8 (MQ=255) aTTGACCTTTACGGCCTTGCAGCAGCGgctggggt < 1:7036638‑M2/35‑9 (MQ=255) aTTGACCTTTACGGCCTTGCAGCAGCGgctggggt < 1:12833508‑M2/35‑9 (MQ=255) aTTGACCTTTACGGCCTTGCAGCAGCGgctggggt < 1:2050457‑M2/35‑9 (MQ=255) aTTGACCTTTACGGCCTTGCAGCAGCGgctggggg < 1:14297942‑M2/35‑9 (MQ=255) aTTGACCTTTACGGCCTTGCAGCAGCGGCTGGAtt < 1:18785231/35‑1 (MQ=255) aTTGACCTTTACGGCCTTGCAGCAGCGGCTGGAtt < 1:18343177/35‑1 (MQ=255) aTTGACCTTTACGGCCTTGCAGCAGCCGGTGGGtt > 1:4009589/1‑35 (MQ=25) ttGACCTTTACGGCCTTGCAGCAGCGgctgggttc < 1:6950465‑M2/35‑10 (MQ=255) ttGACCTTTACGGCCTTGCAGCAGCGgctggggtt < 1:14829150‑M2/35‑10 (MQ=255) ttGACCTTTACGGCCTTGCAGCAGCGgctggggtt < 1:11632577‑M2/35‑10 (MQ=255) ttGACCTTTACGGCCTTGCAGCAGCGgctggggtt < 1:20529202‑M2/35‑10 (MQ=255) ttGACCTTTACGGCCTTGCAGCAGCGGCTGGATTc < 1:6767877/35‑1 (MQ=255) ttGACCTTTACGGCCTTGCAGCAGCGGCTGGATTc < 1:1039767/35‑1 (MQ=255) cttttGCGGCCTTGCAGCAGCGGCTGGATTCGCTg < 1:139170/33‑1 (MQ=37) ccTTTGCGGCCTTGCAGCAGCGGCTGGATTCGCTg < 1:6013330/35‑1 (MQ=255) ccTTTACGGCCTTGCAGCAGCGgctggggttggcg < 1:5710349‑M2/35‑14 (MQ=255) ccTTTACGGCCTTGCAGCAGCGgctggggttgctg < 1:9022777‑M2/35‑14 (MQ=255) ccTTTACGGCCTTGCAGCAGCGGGTGGGTTCGCTg > 1:20034126/1‑35 (MQ=25) ccTTTACGGCCTTGCAGCAGCGGCTGGGGTCGCTg > 1:13394403/1‑35 (MQ=25) ccTTTACGGCCTTGCAGCAGCGGCTGGATTCGCTg < 1:11609983/35‑1 (MQ=255) tttCCGGCCTTGCAGCAGCGGCTGGATTCGCTGAt < 1:10093451/35‑1 (MQ=255) tttACGGCCTTGCAGCAGCGGCTGGATTCGCTAAt < 1:19006134/35‑1 (MQ=255) ttaaCGGCCTTGCAGCAGCGGCTGGATTCGCTGAt < 1:20438898/32‑1 (MQ=255) ttccGGCCTTGCAGCAGCGGCTGGATTCGCTGAtg < 1:15662999/32‑1 (MQ=255) ttACGGCCTTGCAGCAGCGgctgggggtggcgctg < 1:8612109‑M2/35‑17 (MQ=255) ttACGGCCTTGCAGCAGCGGCTGGATTCGCTGAtg < 1:16047945/35‑1 (MQ=255) tACGGCCTTGCAGCAGCGgctggggttggcggtgg < 1:1348160‑M2/35‑18 (MQ=255) tACGGCCTTGCAGCAGCGGCTGGATTCGCTGAtgc < 1:10525276/35‑1 (MQ=255) tACGGACTTGCAGCAGCGGCTGGATTCGCTGAtgc < 1:5493934/35‑1 (MQ=255) aCGGCCTTGCAGCAGCGgctggggttggcggtggc < 1:19635032‑M2/35‑19 (MQ=255) aCGGCCTTGCAGCAGCGGCTGGATTCGCTGAtgct < 1:8003889/35‑1 (MQ=255) aCGGCCTTGCAGCAGCGGCTGGATTCGCTGAtgct < 1:16985323/35‑1 (MQ=255) cGGCCTTGCAGCAGCGGCTGGATTCGCTGAtgctg < 1:17359444/35‑1 (MQ=255) cGGCCTTGCAGCAGCGGCTGGATTCGCTGAtgctg < 1:9802020/35‑1 (MQ=255) ggCCTTGCAGCAGCGGCTGGATTCGCTGAtgctgc < 1:12317949/35‑1 (MQ=255) ggCCTTGCAGCAGCGGCTGGATTCGCTGAtgctgc < 1:9288427/35‑1 (MQ=255) ggCCTTGCAGCAGCGGCTGGATTCGCTGAtgctgc < 1:6282548/35‑1 (MQ=255) ggCCTTGCAGCAGCGGCTGGATTCGCTGAtgctgc < 1:2774405/35‑1 (MQ=255) gCCTTGCAGCAGCGGCTGGATTCGCTGATGCTgcg < 1:15037374/35‑1 (MQ=255) cTTGCAGCAGCGGCTGGATTCGCTGATGCTGcgcg < 1:4058700/35‑1 (MQ=255) cTTGCAGCAGCGGCTGGATTCGCTGATGCTGcgcg < 1:5188100/35‑1 (MQ=255) ttGCAGCAGCGGCTGGATTCGCTGATGCTGCGCGa < 1:7615370/35‑1 (MQ=255) ttGCAGCAGCGGCTGGATTCGCTGATGCTGCGCGa < 1:6166676/35‑1 (MQ=255) tGCAGCAGCGGCTGGATTCGCTGATGCTGCGCGAc < 1:7250253/35‑1 (MQ=255) gcagcaGCGGCTGGATTCGCTGATGCTGCGCGACa < 1:18192072/35‑1 (MQ=255) gcagcaGCGGCTGGATTCGCTGATGCTGCGCGACa < 1:9141786/35‑1 (MQ=255) gcagcaGCGGCTGGATTCGCTGATGCTGCGCGACa < 1:9263548/35‑1 (MQ=255) cagcagCGGCTGGATTCGCTGATGCTGCGCGACAg < 1:17776238/35‑1 (MQ=255) cagcagCGGCTGGATTCGCTGATGCTGCGCGACAg < 1:10438356/35‑1 (MQ=255) agcagcGGCTGGATTCGCTGATGCTGCGCGACAGa < 1:14020875/35‑1 (MQ=255) agcagcGGCTGGATTCGCTGATGCTGCGCGACAGa < 1:19802298/35‑1 (MQ=255) gcagcGGCTGGATTCGCTGATGCTGCGCGACAGAc < 1:6152096/35‑1 (MQ=255) gcagcGGCTGGATTCGCTGATGCTGCGCGACAGAc < 1:6353920/35‑1 (MQ=255) cagcGGCTGGATTCGCTGATGCTGCGCGACAGACt < 1:13638978/35‑1 (MQ=255) cGGCTGGATTCGCTGATGCTGCGCGACAGACTGCg > 1:3134038/1‑35 (MQ=255) ggCTGGATTCGCTGATGCTGCGCGGCAGACTGCgg > 1:14480931/1‑34 (MQ=255) ggCTGGATTCGCTGATGCTGCGCGACAGACTGCgg > 1:9177593/1‑34 (MQ=255) | CAACAAAAATTGACCTTTACGGCCTTGCAGCAGCGGCTGGATTCGCTGATGCTGCGCGACAGACTGCGT > REL606/1452401‑1452469 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |