New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 82013 =70 (0.680)10 (0.160) 3/30 NT 19.5% coding (245/606 nt) leuD isopropylmalate isomerase small subunit
?REL606 3792209 = 39 (0.610)coding (315/414 nt) ECB_03532 hypothetical protein

Only 100 of 116 total aligned reads displayed.

CAATGCCCAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAGC  >  REL606/81979‑82047
                                  |                                  
cAATGCCCAGGGCGCGTGCTCACGCGAAGAGCcac                                    >  1:10674891/1‑35 (MQ=255)
cAATGCCCAGGGCGCGTGCTCACGCGAAGAGCcac                                    >  1:4671980/1‑35 (MQ=255)
cAATGCCCAGGGCGCGTGCTCACGCGAAGAGCcac                                    >  1:11425367/1‑35 (MQ=255)
 aaTGCCCAGGGCGCGTGCTCACGCGAAGAGCcaca                                   >  1:7998492/1‑35 (MQ=255)
 aaTGCCCAGGGCGCGTGCTCACGCGAAGAGCcaca                                   >  1:2685488/1‑35 (MQ=255)
 aaTGCCCAGGGCGCGTGCTCACGCGAAGAGCcaca                                   >  1:9594698/1‑35 (MQ=255)
  aTGCCCAGGGCGCGTGCTCACGCGAAGAGCCACAg                                  >  1:11117881/1‑35 (MQ=255)
  aTGCCCAGGGCGCGTGCTCACGCGAAGAGCCACAg                                  >  1:5073646/1‑35 (MQ=255)
  aTGCCCAGGGCGCGTGCTCACGCGAAGAGCCACAg                                  >  1:18342078/1‑35 (MQ=255)
     cccAGGGCGCGTGCTCACGCGAAGAGCCACAGCCg                               >  1:2048005/1‑35 (MQ=255)
      ccAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGa                              >  1:16018777/1‑35 (MQ=255)
      ccAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGa                              >  1:230969/1‑35 (MQ=255)
       cAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGaa                             >  1:18536769/1‑35 (MQ=255)
       cAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGaa                             >  1:188765/1‑35 (MQ=255)
        aGGGCGCGTGCTCACGCGAAGAGCCACAGCCGAAg                            >  1:11872333/1‑35 (MQ=255)
        aGGGCGCGTGCTCACGCGAAGAGCCACAGCCGAAg                            >  1:1474407/1‑35 (MQ=255)
        aGGGCGCGTGCTCACGCGAAGAGCCACAGCCGAAg                            >  1:3256773/1‑35 (MQ=255)
         gggCGCGTGCTCACGCGAAGAGCCACAGCCGAAgg                           >  1:1131525/1‑34 (MQ=255)
         gggCGCGTGCTCACGCGAAGAGCCACAGCCGAAGt                           >  1:6768608/1‑35 (MQ=255)
         gggCGCGTGCTCACGCGAAGAGCCACAGCCGAAGt                           >  1:4705584/1‑35 (MQ=255)
          ggCGCGTGCTCACGCGAAGAGCCACAGCCGAAggt                          >  1:7215296/1‑33 (MQ=255)
           gcgcGTGCTCACGCGAAGAGCCACAGCCGAAGttt                         >  1:2385334/1‑35 (MQ=255)
           gcgcGTGCTCACGCGAAGAGCCACAGCCGAAGttt                         >  1:20480087/1‑35 (MQ=255)
           gcgcGTGCTCACGCGAAGAGCCACAGCCGAAGttt                         >  1:19483950/1‑35 (MQ=255)
           gcgcGTGCTCACGCGAAGAGCCACAGCCGAAGttt                         >  1:19870400/1‑35 (MQ=255)
           gcgcGTGCTCACGCGAAGAGCCACAGCCGAAGttt                         >  1:14746708/1‑35 (MQ=255)
           gcgcGTGCTCACGCGAAGAGCCACAGCAGAAGttt                         >  1:12156372/1‑35 (MQ=255)
            cgcgTGCTCACGCGAAGAGCCACAGCCGAAGtttt                        >  1:1331353/1‑35 (MQ=255)
             gcttGCTCACGCGAAGAGCCACAGCCGAAGGTTtc                       >  1:6838938/4‑35 (MQ=38)
             gcgTGCTCACGCGAAGAGCCACAGCCGAAGTTTtc                       >  1:13873136/1‑35 (MQ=255)
             gcgTGCTCACGCGAAGAGCCACAGCCGAAGTTTtc                       >  1:13453575/1‑35 (MQ=255)
             gcgTGCTCACGCGAAGAGCCACAGCCGAAGTTTtc                       >  1:18447931/1‑35 (MQ=255)
             gcgTGCTCACGCGAAGAGCCACAGCCGAAGGTTtc                       >  1:805433/1‑35 (MQ=255)
              cgTGCTCACGCGAAGAGCCACAGCCGAAGTTTtct                      >  1:6298877/1‑35 (MQ=255)
              cgTGCTCACGCGAAGAGCCACAGCCGAAGTTTtct                      >  1:19967812/1‑35 (MQ=255)
               gTGCTCACGCGAAGAGCCACAGCCGAAGTTTtctc                     >  1:19774923/1‑35 (MQ=255)
               gTGCTCACGCGAAGAGCCACAGCCGAAGTTTtctc                     >  1:1682935/1‑35 (MQ=255)
                tGCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCg                    >  1:9613997/1‑35 (MQ=255)
                tGCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCg                    >  1:6987699/1‑35 (MQ=255)
                 gCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGt                   >  1:3933698/1‑35 (MQ=255)
                 gCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGt                   >  1:14935686/1‑35 (MQ=255)
                 gCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGt                   >  1:12013179/1‑35 (MQ=255)
                 gCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGt                   >  1:11909498/1‑35 (MQ=255)
                  cTCACGCGAACAGCCACAGCCGAAGTTTTCTCGTg                  >  1:20423843/1‑35 (MQ=255)
                   tCACGCGAAGAGCCACAGCCGAAGTTTTNNCNtnn                 >  1:6051291/1‑33 (MQ=38)
                   tCACGCGAAGAGCCACAGCCGAAGTTTTCTCGTGc                 >  1:8543915/1‑35 (MQ=255)
                    cACGCGAAGAGCCACAGCCGAAGTTTTCTCGTggc                >  1:6571865/1‑33 (MQ=255)
                    cACGCGAAGAGCCACAGCCGAAGGTTTCTCGTGcc                >  1:19917313/1‑35 (MQ=255)
                     aCGCGAAGAGCCACAGCCGAAGTTTTCTCGTGCCa               >  1:3990923/1‑35 (MQ=255)
                     aCGCGAAGAGCCACAGCCGAAGTTTTCTCGTGCCa               >  1:3606223/1‑35 (MQ=255)
                      cgcgAAGAGCCACAGCCGAAGTTTTCTCGTGcccg              >  1:11091610/1‑33 (MQ=255)
                      cgcgAAGAGCCACAGCCGAAGTTTTCTCGTGCCAg              >  1:13527996/1‑35 (MQ=255)
                       gcgAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGc             >  1:6481020/1‑35 (MQ=255)
                       gcgAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGc             >  1:9804818/1‑35 (MQ=255)
                       gcgAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGc             >  1:5968539/1‑35 (MQ=255)
                       gcgAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGc             >  1:2846885/1‑35 (MQ=255)
                       gcgAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGc             >  1:12701490/1‑35 (MQ=255)
                        cgAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCa            >  1:2912064/1‑35 (MQ=255)
                        cgAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCa            >  1:11499720/1‑35 (MQ=255)
                        cgAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCa            >  1:5343917/1‑35 (MQ=255)
                         gccccccccCAGCCGAAGTTTTCTCGTGCCAGCaa           >  1:3193025‑M1/10‑35 (MQ=255)
                         gAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCaa           >  1:4067792/1‑35 (MQ=255)
                         gAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCaa           >  1:9903366/1‑35 (MQ=255)
                         gAAGAGCCACAGCCGAAGGTTTCTCGTGCCAGCaa           >  1:17801850/1‑35 (MQ=255)
                          gcccccccCAGCCGAAGTTTTCTCGTGCCAGCaaa          >  1:5673042‑M1/9‑35 (MQ=255)
                          ccccccccCAGCCGAAGTTTTCTCGTGCCAGCaaa          >  1:8243624‑M1/9‑35 (MQ=255)
                          aaGAGCCACAGCCGAAGTTTTCTCGTGCCAGCaaa          >  1:17833175/1‑35 (MQ=255)
                          aaGAGCCACAGCCGAAGTTTTCTCGTGCCAGCaaa          >  1:7565035/1‑35 (MQ=255)
                          aaGAGCCACAGCCGAAGGTTTCTCGTGCCAGCaaa          >  1:17160255/1‑35 (MQ=255)
                           gccccccCAGCCGAAGTTTTCTCGTGCCAGCaaaa         >  1:835127‑M1/8‑35 (MQ=255)
                           cccccccCAGCCGAAGTTTTCTCGTGCCAGCaaaa         >  1:7376667‑M1/8‑35 (MQ=255)
                           agagCCACAGCCGAAGTTTTCTCGTGCCCGCaaaa         >  1:2963859/1‑35 (MQ=255)
                           agagCCACAGCCGAAGGTTTCTCGTGCCAGCaaaa         >  1:2668962/1‑35 (MQ=255)
                           agagCCACAGCCGAAGGTTTCTCGTGCCAGCaaaa         >  1:20147994/1‑35 (MQ=255)
                            gcccccCAGCCGAAGTTTTCTCGTGCCAGCAAAAt        >  1:1756571‑M1/7‑35 (MQ=255)
                            gcccccCAGCCGAAGTTTTCTCGTGCCAGCAAAAt        >  1:18153296‑M1/7‑35 (MQ=255)
                            gagCCACAGCCGAAGTTTTCTCGTGCCAGCAAAAt        >  1:13952021/1‑35 (MQ=255)
                            gagCCACAGCCGAAGTTTTCTCGTGCCAGCAAAAt        >  1:8607275/1‑35 (MQ=255)
                            ccccccCAGCCGAAGTTTTCTCGTGCCAGCAAAAt        >  1:5622200‑M1/7‑35 (MQ=255)
                            ccccccCAGCCGAAGTTTTCTCGTGCCAGCAAAAt        >  1:3322749‑M1/7‑35 (MQ=255)
                            ccccccCAGCCGAAGTTTTCTCGTGCCAGCAAAAt        >  1:19010381‑M1/7‑35 (MQ=255)
                             cgcccCAGCCGAAGTTTTCTCGTGCCAGCAAAATg       >  1:1234235‑M1/6‑35 (MQ=255)
                             cccccCAGCCGAAGTTTTCTCGTGCCAGCAAAATg       >  1:3844906‑M1/6‑35 (MQ=255)
                             agCCACAGCCGAAGTTTTCTCGTGCCAGCAAAATg       >  1:9683581/1‑35 (MQ=255)
                               cccCAGCCGAAGTTTTCTCGTGCCAGCAAAATGGa     >  1:786004‑M1/4‑35 (MQ=255)
                               cccCAGCCGAAGTTTTCTCGTGCCAGCAAAATGGa     >  1:9638748‑M1/4‑35 (MQ=255)
                               ccACAGCCGAAGTTTTCTCGTGCCAGCAAAATGGa     >  1:13251158/1‑35 (MQ=255)
                               ccACAGCCGAAGGTTTCTCGTGCCAGCAAAATGGa     >  1:16023824/1‑35 (MQ=255)
                                ccCAGCCGAAGTTTTCTCGTGCCAGCAAAATGGaa    >  1:2513761‑M1/3‑35 (MQ=255)
                                cacaGCCGAAGTTTTCTCGTGCCAGCAAAATGGaa    >  1:3486337/1‑35 (MQ=255)
                                cacaGCCGAAGTTTTCTCGTGCCAGCAAAATGGaa    >  1:10581298/1‑35 (MQ=255)
                                cacaGCCGAAGGTTTCTCGTGCCAGCAAAATGGaa    >  1:18717879/1‑35 (MQ=255)
                                 cCAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAg   >  1:918764‑M1/2‑35 (MQ=255)
                                 cCAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAg   >  1:2336841‑M1/2‑35 (MQ=255)
                                 cCAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAg   >  1:16785434‑M1/2‑35 (MQ=255)
                                 acaGCCGAAGTTTTCTCGTTCCAGCAAAATGGAAg   >  1:5317218/1‑35 (MQ=255)
                                 acaGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAg   >  1:9249825/1‑35 (MQ=255)
                                  CAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAgc  >  1:7980116‑M1/1‑35 (MQ=255)
                                  CAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAgc  >  1:2972325‑M1/1‑35 (MQ=255)
                                  CAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAgc  >  1:13598698‑M1/1‑35 (MQ=255)
                                  |                                  
CAATGCCCAGGGCGCGTGCTCACGCGAAGAGCCACAGCCGAAGTTTTCTCGTGCCAGCAAAATGGAAGC  >  REL606/81979‑82047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.