New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 790656 =71 (0.690)5 (0.070) 3/34 NT 9.7% coding (88/186 nt) ECB_00731 conserved hypothetical protein
?REL606 1598222 = 43 (0.590)coding (459/1461 nt) ydfI predicted mannonate dehydrogenase

TCGCGTTGCATTTCATCGATAACTTTTGGCGTCATCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/790696‑790656
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggctgGTGGGGATTTTGCACGTCGGCAGCGACCATCGGG  >  REL606/1598222‑1598255
                                                                           
TCGCGTTGCATTTCATCGATAACTTTTGGCGTCAT                                          <  1:17353332/35‑1
TCGCGTTGCATTTCATCGATAACTTTTGGCGTCAT                                          >  1:19741354/1‑35
TCGCGTTGCATTTCATCGATAACTTTTGGCGTCAT                                          >  1:14463855/1‑35
TCGCGTTGCATTTCATCGATAACTTTTGGCGTCAT                                          <  1:4688357/35‑1
TCGCGTTGCATTTCATCGATAACTTTTGGCGTCAT                                          >  1:7169466/1‑35
TCGCGTTGCATTTCATCGATAACTTTTGGCGTCAN                                          <  1:10762695/35‑1
 CGCGTTGCATTTCATCGATAACTTTTGGCGTCATC                                         >  1:1865322/1‑35
 CGCGTTGCATTTCATCGATAACTTTTGGCGTCATC                                         <  1:20252748/35‑1
 CGCGTTGCATTTCATCGATAACTTTTGGCGTCATC                                         <  1:15390751/35‑1
 CGCGTTGCATTTCATCGATAACTTTTGGCGTCATC                                         <  1:3126440/35‑1
 CGCGTTGCATTTCATCGATAACTTTTGGCGTCATC                                         <  1:14797963/35‑1
 CGCGTTGCATTTCATCGATAACTTTTGGCGTCATC                                         >  1:14721734/1‑35
 CGCGTTGCATTTCATCGATAACTTTTGGCGTCATC                                         >  1:12675728/1‑35
 CGCGTTGCATTTCATCGATAACTTTTGGCGTCATC                                         <  1:10619083/35‑1
 CGCGTTGCATTTCATCGATAACTTTTGGCGTCATC                                         <  1:1042948/35‑1
 CGCGTTGCATTTCATAGATAACTTTTGGCGTCATC                                         <  1:829587/35‑1
  GCGTTGCATTTCATCGATAACTTTTGGCGTCATCG                                        <  1:2616123/35‑1
  GCGTTGCATTTCATCGATAACTTTTGGCGTCATCG                                        >  1:2616544/1‑35
   CGTTGCATTTCATCGATAACTTTTGGCGTCATCGG                                       >  1:13814227/1‑35
   CGTTGCATTTCATCGATAACTTTTGGCGTCATCGG                                       >  1:16958282/1‑35
   CGTTGCATTTCATCGATAACTTTTGGCGTCATCGG                                       <  1:11423432/35‑1
    GTTGCATTTCATCGATAACTTTTGGCGTCATCGGC                                      <  1:19887316/35‑1
    GTTGCATTTCATCGATAACTTTTGGCGTCATCGGC                                      >  1:14953269/1‑35
    GTTGCATTTCATCGATAACTTTTGGCGTCATCGGC                                      >  1:18668873/1‑35
    GTTGCATTTCATCGATAACTTTTGGCGTCATCGGC                                      <  1:8218672/35‑1
    GTTGCATTTCATCGATAACTTTTGGCGTCATCGGC                                      >  1:14039173/1‑35
    GTTGCATTTCATCGATAACTTTTGGCGTCATCGGC                                      >  1:4117340/1‑35
    GTTGCATTTCATCGATAACTTTTGGCGTCATCGGC                                      >  1:413455/1‑35
    GTTGCATTTCATCGATAACTTTTGGCGTCATCGGC                                      <  1:5005251/35‑1
    GTTGCATTTCATCCATAACTTTTGGCGTCATCGGC                                      >  1:10503817/1‑35
     TTGCATTTCATCGATAACTTTTGGCGTCATCGGCT                                     >  1:17667074/1‑35
     TTGCATTTCATCGATAACTTTTGGCGTCATCGGCT                                     <  1:16901303/35‑1
     TTGCATTTCATCGATAACTTTTGGCGTCATCGGCT                                     <  1:912180/35‑1
     TTGCATTTCATCGATAACTTTTGGCGTCATCGGCT                                     >  1:1535609/1‑35
     TTGCATTTCATCGATAACTTTTGGCGTCATCGGCT                                     <  1:14896566/35‑1
     TTGCATTTCATCGATAACTTTTGGCGTCATCGGCT                                     >  1:7915877/1‑35
     TTGCATTTCATCGATAACTTTTGGCGTCATCGGCT                                     <  1:14266635/35‑1
      TGCATTTCATCGATAACTTTTGGCGTCATCGGCTG                                    >  1:19913825/1‑35
      TGCATTTCATCGATAACTTTTGGCGTCATCGGCTG                                    >  1:19705117/1‑35
      TGCATTTCATCGATAACTTTTGGCGTCATCGGCTG                                    <  1:17684706/35‑1
      TGCATTTCATCGATAACTTTTGGCGTCATCGGCTG                                    >  1:7803790/1‑35
      TGCATTTCATCGATAACTTTTGGCGTCATCGGCTG                                    >  1:12319202/1‑35
      TGCATTTCATCGATAACTTTTGGCGTCATCGGCTG                                    >  1:17014259/1‑35
      TGCATTTCATCGATAACTTTTGGCGTCATCGGCTG                                    >  1:1301884/1‑35
      TGCATTTCATCGATAACTTTTGGCGTCATCGGCTG                                    >  1:16054892/1‑35
      TGCATTTCATCGATAACTTTTGGCGTCATCGGCTG                                    <  1:15243795/35‑1
       GCATTTCATCGATAACTTTTGGCGTCATCGGCTGG                                   >  1:4689733/1‑35
        CATTTCATCGATAACTTTTGGCGTCATCGGCTGGg                                  >  1:13183051/1‑34
         ATTTCATCGATAACTTTTGGCGTCATCGGCTGGgg                                 >  1:8541351/1‑33
         ATTTCATCGATAACTTTTGGCGTCATCGGCTGGgg                                 >  1:12782306/1‑33
         ATTTCATCGATAACTTTTGGCGTCATCGGCTGGgg                                 >  1:15803974/1‑33
         ATTTCATCGATAACTTTTGGCGTCATCGGCTGGcg                                 >  1:6989929/1‑33
         ATTTCATCGATAACTTTTGGCGTCATCGGCTGGTG                                 >  1:55186/1‑35
          TTTCATCGATAACTTTTGGCGTCATCGGCTGGTGG                                >  1:16360882/1‑35
          TTTCATCGATAACTTTTGGCGTCATCGGCTGGTGG                                >  1:3311714/1‑35
           TTCATCGATAACTTTTGGCGTCATCGGCTGGTGcg                               >  1:17650293/1‑33
            TCATCGATAACTTTTGGCGTCATCGGCTGGTGGGc                              >  1:10834876/1‑34
            TCATCGATAACTTTTGGCGTCATCGGCTGGGGGGc                              >  1:12169571/1‑34
            TCATCGATAACTTTTGGCGTCATCGGCTGGGGGGG                              >  1:13371507/1‑35
             CATCGATAACTTTTGGCGTCATCGGCTGGTGGGGA                             >  1:6573006/1‑35
              ATCGATAACTTTTGGCGTCATCGGCTGGTGGGtcc                            >  1:14827760/1‑32
              ATCGATAACTTTTGGCGTCATCGGCTGGTGGGccg                            >  1:7169365/1‑32
              ATCGATAACTTTTGGCGTCATCGGCTGGTGGGGgt                            >  1:2069212/1‑33
              ATCGATAACTTTTGGCGTCATCGGCTGGTGGGGAT                            >  1:3107425/1‑35
               TCGATAACTTTTGGCGTCATCGGCTGGTGGGCATa                           >  1:7178786/1‑34
                                  TCGGCTGGTGGGGATTTTGCACGTCGGCAGCGACC        <  1:19963831/35‑1
                                    GGCTGGTGGGGATTTTGCACGTCGGCAGCGACCAc      >  1:17301248/1‑34
                                    GGCTGGTGGGGATTTTGCACGTCGGCAGCGACCAT      <  1:17074790/35‑1
                                    GGCTGGTGGGGATTTTGCACGTCGGCAGCGACCAT      <  1:7428059/35‑1
                                     GCTGGTGGGGATTTTGCACGTCGGCAGGGACCATC     >  1:16812515/1‑35
                                     GCTGGTGGGGATTTTGCACGTCGGCAGCGACCATC     >  1:3097965/1‑35
                                     GCTGGTGGGGATTTTGCACGTCGGCAGCGACCATC     <  1:736273/35‑1
                                     GCTGGTGGGGATTTTGCACGTCGGCAGCGACCATC     <  1:18121086/35‑1
                                     GCTGGTGGGGATTTTGCACGTCGGCAGCGACCATC     <  1:17084617/35‑1
                                     GCTGGTGGGGATTTTGCACGTCGGCAGCGACCATC     <  1:19501909/35‑1
                                      CTGGTGGGGATTTTGCACGTCGGCAGCGACCATCG    >  1:15924824/1‑35
                                      CTGGTGGGGATTTTGCACGTCGGCAGCGACCATCG    <  1:11034346/35‑1
                                        GGTGGGGATTTTGCACGTCGGCAGCGACCATCGGG  <  1:7183536/35‑1
                                        GGTGGGGATTTTGCACGTCGGCAGCGACCATCGGG  >  1:7023805/1‑35
                                        GGTGGGGATTTTGCACGTCGGCAGCGACCATCGGG  <  1:8031811/35‑1
                                        GGTGGGGATTTTGCACGTCGGCAGCGACCATCGGG  >  1:1149448/1‑35
                                        GGTGGGGATTTTGCACGTCGGCAGCGACCATCGGG  <  1:1279270/35‑1
                                        GGTGGGGATTTTGCACGTCGGCAGCGACCATCGGG  <  1:9070647/35‑1
                                        GGTGGGGATTTTGCACGTCGGCAGCGACCATCGGG  <  1:9126259/35‑1
                                                                           
TCGCGTTGCATTTCATCGATAACTTTTGGCGTCATCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/790696‑790656
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggctgGTGGGGATTTTGCACGTCGGCAGCGACCATCGGG  >  REL606/1598222‑1598255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.