New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1711816 =78 (0.760)21 (0.250) 4/40 NT 22.6% coding (188/816 nt) ydhO predicted lipoprotein
?REL606 = 2450890 79 (0.920)intergenic (‑182/+27) yfeA/alaX predicted diguanylate cyclase/tRNA‑Ala

AGAAGCGGTTTTGCTTTTGGTCGTACTTTTACTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1711853‑1711816
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGTA  <  REL606/2450890‑2450857
                                                                        
AGAAGCGGTTTTGCTTTTGGTCGTACTTTTACTGG                                       <  1:2113937/35‑1
AGAAGCGGTTTTGCTTTTGGTCGTACTTTTACTGG                                       <  1:5787564/35‑1
 GAAGCGGTTTTGCTTTTGGTCGTACTTTTACTGGC                                      <  1:12058070/35‑1
 GAAGCGGTTTTGCTTTTGGTCGTACTTTTACTGGC                                      <  1:1393353/35‑1
  AAGCGGTTTTGCTTTTGGTCGTACTTTTGCTGGCG                                     <  1:5347558/35‑1
  AAGCGGTTTTGCTTTTGGTCGTACTTTTACTGGgg                                     >  1:15629417/1‑33
  AAGCGGTTTTGCTTTTGGTCGTACTTTTACTGGCG                                     >  1:19738762/1‑35
  AAGCGGTTTTGCTTTTGGTCGTACTTTTACTGGCG                                     <  1:7239570/35‑1
  AAGCGGTTTTGCTTTTGGTCGTACTTTTACTGGCG                                     <  1:11504457/35‑1
   AGCGGTTTTGCTTTTGGTCGTACTTTTACTGGCGG                                    <  1:5833462/35‑1
     CGGTTTTGCTTTTGGTCGTACTTTTACTGGCGGGG                                  >  1:711098/1‑35
     CGGTTTTGCTTTTGGTCGTACTCTTACTGGCGGGG                                  >  1:3466270/1‑35
      GGTTTTGCTTTTGGTCGTACTTTTACTGGCGGGGt                                 >  1:1467716/1‑34
      GGTTTTGCTTTTGGTCGTACTTTTACTGGCGGGGt                                 >  1:15444038/1‑34
      GGTTTTGCTTTTGGTCGTACTTTTACTGGCGGGGG                                 >  1:3808218/1‑35
      GGTTTTGCTTTTGGTCGTACTTTTACTGGCGGGGG                                 >  1:13388816/1‑35
      GGTTTTGCTTTTGGTCGTACTTTTACTGGCGGGGG                                 >  1:15682730/1‑35
      GGTTTTGCTTTTGGTCGTACTTTTACTGGCGGGGG                                 >  1:19009382/1‑35
      GGTTTTGCTTTTGGTCGTACTTTTACTGGCGGGGG                                 >  1:6335699/1‑35
       GTTTTGCTTTTGGTCGTACTTTTACTGGCGGGGtt                                >  1:4896796/1‑33
       GTTTTGCTTTTGGTCGTACTTTTACTGGCGGGGtt                                >  1:14439492/1‑33
       GTTTTGCTTTTGGTCGTACTTTTACTGGCGGGGtg                                >  1:6628391/1‑33
       GTTTTGCTTTTGGTCGTACTTTTACTGGCGGGGGT                                >  1:14533073/1‑35
        TTTTGCTTTTGGTCGTACTTTTACTGGCGGGGtgt                               >  1:2284617/1‑32
        TTTTGCTTTTGGTCGTACTTTTACTGGCGGGGTTT                               >  1:11408457/1‑35
        TTTTGCTTTTGGTCGTACTTTTACTGGCGGGGGTT                               >  1:9200977/1‑35
         TTTGCTTTTGGTCGTACTTTTACTGGCGGGGTTTT                              >  1:9340385/1‑35
         TTTGCTTTTGGTCGTACTTTTACTGGCGGGGTTTT                              >  1:10674026/1‑35
         TTTGCTTTTGGTCGTACTTTTACTGGCGGGGGTTT                              >  1:695776/1‑35
         TTTGCTTTTGGTCGTACTTTTACTGGCGGGGGTTT                              >  1:8098592/1‑35
          TTGCTTTTGGTCGTACTTTTACTGGCGGGGGTTTT                             >  1:19139342/1‑35
            GCTTTTGGTCGTACTTTTACTGGCGGGGTTTTTTT                           >  1:8998147/1‑35
            GCTTTTGGTCGTACTTTTACTGGCGGGGGTTTTTT                           >  1:2061880/1‑35
            GCTTTTGGTCGTACTTTTACTGGCGGGGGTTTTTT                           >  1:12825964/1‑35
            GCTTTTGGTCGTACTTTTACTGGCGGGGGGTTTTT                           >  1:845463/1‑35
             CTTTTGGTCGTACTTTTACTGGCGGGGTTTTTTTt                          >  1:17560558/1‑34
             CTTTTGGTCGTACTTTTACTGGCGGGGGTTTTTct                          >  1:18019015/1‑33
             CTTTTGGTCGTACTTTTACTGGCGGGGGTTTTTTt                          >  1:17592448/1‑34
             CTTTTGGTCGTACTTTTACTGGCGGGGGTTTTTTt                          >  1:11446062/1‑34
             CTTTTGGTCGTACTTTTACTGGCGGGGGTTTTTTG                          >  1:3610100/1‑35
              TTTTGGTCGTACTTTTACTGGCGGGGGTTTTTTtt                         >  1:19329413/1‑33
              TTTTGGTCGTACTTTTACTGGCGGGGGTTTTTTtt                         >  1:10109490/1‑33
              TTTTGGTCGTACTTTTACTGGCGGGGGTTTTTTtt                         >  1:11946546/1‑33
              TTTTGGTCGTACTTTTACTGGCGGGGGTTTTTTtc                         >  1:2390807/1‑33
               TTTGGTCGTACTTTTACTGGCGGGGGTTTTTTttt                        >  1:15917235/1‑32
               TTTGGTCGTACTTTTACTGGCGGGGGTTTTTTttg                        >  1:2713727/1‑32
               TTTGGTCGTACTTTTACTGGCGGGGGGTTTTTGTt                        >  1:18892336/1‑34
                                  GCGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTT     <  1:10420586/35‑1
                                  GCGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTT     <  1:898788/35‑1
                                  GCGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTT     <  1:6901862/35‑1
                                  GCGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTT     >  1:12247156/1‑35
                                  GCGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTT     <  1:12485322/35‑1
                                  GCGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTT     <  1:1826543/35‑1
                                  GCGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTT     <  1:17651131/35‑1
                                  GCGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTT     <  1:18078704/35‑1
                                  GCGGGGGTTTTTTGTCTCTGCTTTTTGCAGCTTTT     <  1:11967168/35‑1
                                   CGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTG    <  1:18761149/35‑1
                                   CGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTG    >  1:14400591/1‑35
                                   CGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTG    <  1:10861803/35‑1
                                   CGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTG    <  1:14094366/35‑1
                                   CGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTG    <  1:13148157/35‑1
                                   CGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTG    <  1:19781989/35‑1
                                   CGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTG    >  1:7806583/1‑35
                                   CGGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTG    >  1:11292616/1‑35
                                    GGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGT   <  1:7889722/35‑1
                                    GGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGT   <  1:13156310/35‑1
                                    GGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGT   <  1:14192284/35‑1
                                    GGGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGT   >  1:15887574/1‑35
                                    GGGGATTTTTTGTCTCTGCTTTTTGCCGCTTTTGT   >  1:18711594/1‑35
                                     GGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGTA  >  1:6971690/1‑35
                                     GGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGTA  >  1:11448146/1‑35
                                     GGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGTA  >  1:11859613/1‑35
                                     GGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGTA  >  1:19617614/1‑35
                                     GGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGTA  <  1:1085841/35‑1
                                     GGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGTA  >  1:16089850/1‑35
                                     GGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGTA  >  1:9104615/1‑35
                                     GGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGTA  >  1:10114827/1‑35
                                                                        
AGAAGCGGTTTTGCTTTTGGTCGTACTTTTACTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1711853‑1711816
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggGGGTTTTTTGTCTCTGCTTTTTGCCGCTTTTGTA  <  REL606/2450890‑2450857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.