New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1711816 =78 (0.760)21 (0.250) 4/40 NT 22.6% coding (188/816 nt) ydhO predicted lipoprotein
?REL606 = 2450890 79 (0.920)intergenic (‑182/+27) yfeA/alaX predicted diguanylate cyclase/tRNA‑Ala

Only 100 of 190 total aligned reads displayed.

TTACAAAAGCGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAG  >  REL606/2450856‑2450924
                                  |                                  
ttACAAAAGCGGCAAAAAGCAGAGACAAAAAAccc                                    >  1:6748457/1‑35 (MQ=255)
ttACAAAAGCGGCAAAAAGCAGAGACAAAAAAccc                                    <  1:19125839/35‑1 (MQ=255)
 tACAAAAGCGGCAAAAAGCAGAGACAAAAAACCCc                                   >  1:6971690‑M2/1‑34 (MQ=255)
 tACAAAAGCGGCAAAAAGCAGAGACAAAAAACCCc                                   >  1:16089850‑M2/1‑34 (MQ=255)
  aCAAAAGCGGCAAAAAGCAGAGACAAAAAATCCcc                                  >  1:18711594‑M2/1‑33 (MQ=255)
  aCAAAAGCGGCAAAAAGCAGAGACAAAAAACCCcc                                  <  1:14192284‑M2/35‑3 (MQ=255)
  aCAAAAGCGGCAAAAAGCAGAGACAAAAAACCCcc                                  <  1:7889722‑M2/35‑3 (MQ=255)
  aCAAAAGCGGCAAAAAGCAGAGACAAAAAACCCcc                                  >  1:15887574‑M2/1‑33 (MQ=255)
   cAAAAGCGGCAAAAAGCAGAGACAAAAAACCCccg                                 >  1:11292616‑M2/1‑32 (MQ=255)
   cAAAAGCGGCAAAAAGCAGAGACAAAAAACCCccg                                 <  1:10861803‑M2/35‑4 (MQ=255)
   cAAAAGCGGCAAAAAGCAGAGACAAAAAACCCccg                                 <  1:13148157‑M2/35‑4 (MQ=255)
   cAAAAGCGGCAAAAAGCAGAGACAAAAAACCCccg                                 <  1:19781989‑M2/35‑4 (MQ=255)
    aaaaGCGGCAAAAAGCAGAGACAAAAAACCCccgc                                <  1:17651131‑M2/35‑5 (MQ=255)
    aaaaGCGGCAAAAAGCAGAGACAAAAAACCCccgc                                <  1:12485322‑M2/35‑5 (MQ=255)
    aaaaGCGGCAAAAAGCAGAGACAAAAAACCCccgc                                <  1:10420586‑M2/35‑5 (MQ=255)
     aaaGCGGCAAAAAGCAGAGACAAAAAACCCCCGCt                               >  1:12022343/1‑35 (MQ=255)
      aaGCGGCAAAAAGCAGAGACAAAAAACCCCCGCtt                              >  1:9395734/1‑35 (MQ=255)
      aaGCGGCAAAAAGCAGAGACAAAAAACCCCCGCtt                              <  1:5970273/35‑1 (MQ=255)
       aGCGGCAAAAAGCAGAGACAAAAAACCCCCGCttt                             >  1:9250702/1‑35 (MQ=255)
       aGCGGCAAAAAGCAGAGACAAAAAACCCCCGCttt                             >  1:6934531/1‑35 (MQ=255)
        gCGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTg                            <  1:14337571/35‑1 (MQ=255)
        gCGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTg                            <  1:13698287/35‑1 (MQ=255)
        gCGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTg                            >  1:7217097/1‑35 (MQ=255)
         cGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTGc                           >  1:5602478/1‑35 (MQ=255)
         cGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTGc                           >  1:16985967/1‑35 (MQ=255)
         cGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTGc                           <  1:13060955/35‑1 (MQ=255)
         cGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTGc                           >  1:19410699/1‑35 (MQ=255)
         cGGAAAAAAGCAGAGACAAAAAACCCCCGCTTTGc                           <  1:4218202/35‑1 (MQ=255)
          ggCAAAAAGCAGAGACAAAAAACCCCCGCTTTGCa                          <  1:14283237/35‑1 (MQ=255)
          ggCAAAAAGCAGAGACAAAAAACCCCCGCTTTGCa                          >  1:288164/1‑35 (MQ=255)
           gCAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAg                         <  1:1496496/35‑1 (MQ=255)
           gCAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAg                         <  1:8598949/35‑1 (MQ=255)
           gCAAAAAGCAGAGACAAAAAACCCCGCTTTGCAGc                        <  1:2776378/35‑1 (MQ=25)
            cAAAAAGCAGAGACAAAAACCCCCCGCTTTGCAGc                        <  1:18931424/35‑1 (MQ=255)
            cAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAGc                        >  1:3074099/1‑35 (MQ=255)
            cAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAGc                        >  1:3741550/1‑35 (MQ=255)
            cAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAGc                        >  1:20316256/1‑35 (MQ=255)
             aaaaaGCAGAGACAAAAAACCCCCGCTTTGCAGCg                       >  1:14665209/1‑35 (MQ=255)
               aaaGCAGAGACAAAAAACCCCCGCTTTGCAGCGAg                     >  1:11687498/1‑35 (MQ=255)
                aaGCAGAGACAAAAAACCCCCGCTTTGCAGCGAgg                    <  1:18350490/35‑1 (MQ=255)
                aaGCAGAGACAAAAAACCCCCGCTTTGCAGCGAgg                    >  1:13921884/1‑35 (MQ=255)
                 aGCAGAGACAAAAAACCCCCGCTTTGCAGCGAggg                   <  1:10114555/35‑1 (MQ=255)
                 aGCAGAGACAAAAAACCCCCGCTTTGCAGCGAggg                   >  1:18877890/1‑35 (MQ=255)
                  gCAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGt                  >  1:9618687/1‑35 (MQ=255)
                  gCAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGt                  >  1:19565573/1‑35 (MQ=255)
                  gCAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGt                  >  1:12267121/1‑35 (MQ=255)
                  gCAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGt                  >  1:18686918/1‑35 (MQ=255)
                   cAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGtt                 >  1:13089041/1‑35 (MQ=255)
                   cAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGtt                 <  1:8925575/35‑1 (MQ=255)
                    agagACAAAAAACCCCCGCTTTGCAGCGAGGGTTg                >  1:3447565/1‑35 (MQ=255)
                    agagACAAAAAACCCCCGCTTTGCAGCGAGGGTTg                >  1:3873306/1‑35 (MQ=255)
                      agaCAAAAAACCCCCGCTTTGCAGCGAGGGTTGGa              <  1:14088420/35‑1 (MQ=255)
                      agaCAAAAAACCCCCGCTTTGCAGCGAGGGTTGGa              <  1:3177493/35‑1 (MQ=255)
                      agaCAAAAAACCCCCGCTTTGCAGCGAGGGTTGGa              >  1:535373/1‑35 (MQ=255)
                       gaCAAAAAACCCCCGCTTTGCAGCGAGGGTTGGaa             <  1:4522571/35‑1 (MQ=255)
                       caaaaaaaacccccgccagtaaaagtacgaccaaa             >  1:2713727‑M2/4‑12 (MQ=255)
                        gaaaaaaaccCccgccagtaaaagtacgaccaaaa            >  1:2390807‑M2/3‑11 (MQ=255)
                        aaaaaaaaccCccgccagtaaaagtacgaccaaaa            >  1:10109490‑M2/3‑11 (MQ=255)
                        aaaaaaaaccCccgccagtaaaagtacgaccaaaa            >  1:11946546‑M2/3‑11 (MQ=255)
                        aCAAAAAACCCCCGCTTTGCAGCGAGGGTTGGaaa            <  1:17456105/35‑1 (MQ=255)
                         cAAAAAACCCccgccagtaaaagtacgaccaaaag           >  1:3610100‑M2/1‑10 (MQ=255)
                         agaaaaaccCccgccagtaaaagtacgaccaaaag           >  1:18019015‑M2/3‑10 (MQ=255)
                         aaaaaaacCCccgccagtaaaagtacgaccaaaag           >  1:11446062‑M2/2‑10 (MQ=255)
                         aaaaaaacCCccgccagtaaaagtacgaccaaaag           >  1:17592448‑M2/2‑10 (MQ=255)
                          aaaaaaCCCccgccagtaaaagtacgaccaaaagc          >  1:2061880‑M2/1‑9 (MQ=255)
                          aaaaaaCCCCCGCTTTGCAGCGAGGGTTGGAAAtt          >  1:2188377/1‑35 (MQ=255)
                          aaaaaaCCCCCGCTTTGCAGCGAGGGTTGGAAAtt          <  1:16824792/35‑1 (MQ=255)
                          aaaaaaCCCCCGCTTTGCAGCGAGGGTTGGAAAtt          <  1:1822295/35‑1 (MQ=255)
                          aaaaaaACCccgccagtaaaagtacgaccaaaagc          >  1:8998147‑M2/1‑9 (MQ=255)
                           aaaaaCCCCCGCTTTGCAGCGAGGGTTGGAAAttt         <  1:1267766/35‑1 (MQ=255)
                           aaaaaCCCCCGCTTTGCAGCGAGGGTTGGAAAttt         >  1:11983784/1‑35 (MQ=255)
                           aaaaaCCCCCGCTTTGCAGCGAGGGTTGGAAAttt         >  1:2457922/1‑35 (MQ=255)
                            aaaaCCCccgccagtaaaagtacgaccaaaagcaa        >  1:19139342‑M2/1‑7 (MQ=255)
                            aaaaCCCCCGCTTTGCAGCGAGGGTTGTAAATTtg        >  1:18969422/1‑35 (MQ=255)
                             aagcccccGCTTTGCAGCGAGGGTTGGAAATTtgg       <  1:15970617/32‑1 (MQ=255)
                             aaaCCCccgccagtaaaagtacgaccaaaagcaaa       >  1:8098592‑M2/1‑6 (MQ=255)
                             aaaCCCCCGCTTTGCAGCGAGGGTTGGAAATTtgg       <  1:15434164/35‑1 (MQ=255)
                             aaaACCccgccagtaaaagtacgaccaaaagcaaa       >  1:10674026‑M2/1‑6 (MQ=255)
                              acaccccgccagtaaaagtacgaccaaaagcaaaa      >  1:2284617‑M2/4‑5 (MQ=255)
                              aaCCCccgccagtaaaagtacgaccaaaagcaaaa      >  1:9200977‑M2/1‑5 (MQ=255)
                              aaCCCCCGCTTTGCAGCGAGGGTTGGAAATTtggt      <  1:10829655/35‑1 (MQ=255)
                              aaCCCACGCTTTGCAGCGAGGGTTGGAAATTtggt      <  1:6399964/35‑1 (MQ=255)
                               aaccccgccagtaaaagtacgaccaaaagcaaaac     >  1:14439492‑M2/3‑4 (MQ=255)
                               aaccccgccagtaaaagtacgaccaaaagcaaaac     >  1:4896796‑M2/3‑4 (MQ=255)
                               aCCCccgccagtaaaagtacgaccaaaagcaaaac     >  1:14533073‑M2/1‑4 (MQ=255)
                               aCCCCCGCTTTGCAGCGAGGGTTGGAAATTtggtg     >  1:8284001/1‑35 (MQ=255)
                                cccccgccagtaaaagtacgaccaaaagcaaaacc    >  1:13388816‑M2/1‑3 (MQ=255)
                                cccccGCTTTGCAGCGAGGGTTGGAAATTtggtgg    <  1:13595089/35‑1 (MQ=255)
                                cccccGCTTTGCAGCGAGGGTTGGAAATTtggtgg    <  1:17432591/35‑1 (MQ=255)
                                accccgccagtaaaagtacgaccaaaagcaaaacc    >  1:15444038‑M2/2‑3 (MQ=255)
                                 ccccgccagtaagagtacgaccaaaagcaaaaccg   >  1:3466270‑M2/1‑2 (MQ=255)
                                 ccccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGa   <  1:7142345/35‑1 (MQ=255)
                                 ccccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGa   >  1:7767661/1‑35 (MQ=255)
                                 ccccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGa   <  1:1777207/35‑1 (MQ=255)
                                 ccccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGa   >  1:3095303/1‑35 (MQ=255)
                                 ccccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGa   <  1:9700376/35‑1 (MQ=255)
                                  cccGCTTTGCAGCGATGGTTGGAAATTTGGTGGAg  >  1:2212087/1‑35 (MQ=255)
                                  cccGCTTTGCAGCGAGGGTTGGAAATTTGGTTGAg  >  1:4952467/1‑35 (MQ=255)
                                  cccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAg  >  1:19267651/1‑35 (MQ=255)
                                  cccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAg  >  1:19989649/1‑35 (MQ=255)
                                  |                                  
TTACAAAAGCGGCAAAAAGCAGAGACAAAAAACCCCCGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAG  >  REL606/2450856‑2450924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.