New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 121335336 (0.350)4 (0.060) 3/30 NT 9.5% intergenic (‑85/+136) ycgX/ycgE hypothetical protein/predicted DNA‑binding transcriptional regulator
?REL606 = 4512602 54 (0.840)coding (720/747 nt) yjhP predicted methyltransferase

Only 100 of 128 total aligned reads displayed.

GTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTG  >  REL606/1213319‑1213387
                                  |                                  
gTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTG                                    <  1:9450839‑M1/35‑1 (MQ=255)
gTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTG                                    >  1:18732431‑M1/1‑35 (MQ=255)
gTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTG                                    <  1:17006481‑M1/35‑1 (MQ=255)
gTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTG                                    >  1:4142191‑M1/1‑35 (MQ=255)
gTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTG                                    <  1:11696163‑M1/35‑1 (MQ=255)
 ttttACCACTTCAATCTGGTCTGTCCTTTGGCTGg                                   >  1:9040781‑M1/1‑34 (MQ=255)
 ttttACCACTTCAATCTGGTCTGTCCTTTGGCTGg                                   >  1:17512850‑M1/1‑34 (MQ=255)
  tttACCACTTCAATCTGGTCTGTCCTTTGGCtgtg                                  <  1:19656835/35‑1 (MQ=255)
  tttACCACTTCAATCTGGTCTGTCCTTTGGCtgtg                                  <  1:19827218/35‑1 (MQ=255)
  tttACCACTTCAATCTGGTCTGTCCTTTGGCtgtg                                  <  1:2929411/35‑1 (MQ=255)
  tttACCACTTCAATCTGGTCTGTCCTTTGGCtgtg                                  <  1:14838529/35‑1 (MQ=255)
  tttACCACTTCAATCTGGTCTGTCCTTTGGCTGgg                                  >  1:18101977‑M1/1‑33 (MQ=255)
  tttACCACTTCAATCTGGTCTGTCCTTTGGCTGgg                                  >  1:8317961‑M1/1‑33 (MQ=255)
   ttACCACTTCAATCTGGTCTGTCCTTTGGCTGggg                                 >  1:12367271‑M1/1‑32 (MQ=255)
   ttACCACTTCAATCTGGTCTGTCCTTTGGCTGTGa                                 <  1:8212180/35‑1 (MQ=255)
    tACCACTTCAATCTGGTCTGTCCTTTGGCTGgggg                                >  1:3003153‑M1/1‑31 (MQ=255)
     aCCACTTCAATCTGGTCTGTCCTTTGGCTGggggg                               >  1:10282912‑M1/1‑30 (MQ=255)
     aCCACTTCAATCTGGTCTGTCCTTTGGCTGggggg                               >  1:13666154‑M1/1‑30 (MQ=255)
     aCCACTTCAATCTGGTCTGTCCTTTGGCTGTGata                               <  1:10103283/35‑1 (MQ=255)
     aCCACTTAAATCTGGTCTGTCCTTTGGCTGTGata                               <  1:5590768/35‑1 (MQ=255)
      ccACTTCAATCTGGTCTGTCCTTTGGCTGgggggt                              >  1:16098677‑M1/1‑29 (MQ=255)
      ccACTTCAATCTGGTCTGTCCTTTGGCTGgggggg                              >  1:4211252‑M1/1‑29 (MQ=255)
       cACTTCAATCTGGTCTGTCCTTTGGCTGgggggtg                             >  1:1996850‑M1/1‑28 (MQ=255)
        aCTTCAATCTGGTCTGTCCTTTGGCTGgggggtgg                            >  1:10349426‑M1/1‑27 (MQ=255)
        aCTTCAATCTGGTCTGTCCTTTGGCTGTGATATGt                            <  1:12311347/35‑1 (MQ=255)
         cTTCAATCTGGTCTGTCCTTTGGCTGgggggtgtt                           >  1:32446‑M1/1‑26 (MQ=255)
         cTTCAATCTGGTCTGTCCTTTGGCTGTGATATGTa                           <  1:3813742/35‑1 (MQ=255)
         cTTCAATCTGGTCTGTCCTTTGGCTGTGATATGTa                           <  1:16029583/35‑1 (MQ=255)
          ttCAATCTGGTCTGTCCTTTGGCTGTGATATGTAc                          <  1:4546969/35‑1 (MQ=255)
           tCAATCTGGTCTGTCCTTTGGCTGTGATATGTACa                         <  1:2450727/35‑1 (MQ=255)
           tCAATCTGGTCTGTCCTTTGGCTGTGATATGTACa                         <  1:15020623/35‑1 (MQ=255)
            cAATCTGGTCTGTCCTTTGGCTGTGATATGTACag                        <  1:15867335/35‑1 (MQ=255)
            cAATCTGGTCTGTCCTTTGGCTGTGATATGTACag                        <  1:2150729/35‑1 (MQ=255)
            cAATCTGGTCTGTCCTTTGGCTGTGATATGTACag                        <  1:16495093/35‑1 (MQ=255)
            cAATCTGGTCTGTCCTTTGGCTGTGATATGTACag                        <  1:19683596/35‑1 (MQ=255)
            cAATCTGGTCTGTCCTTTGGCTGTGATATGTACag                        <  1:8951114/35‑1 (MQ=255)
              aTCTGGTCTGTCCTTTGGCTGTGATATGTACagag                      <  1:5870616/35‑1 (MQ=255)
              aTCTGGTCTGTCCTTTGGCTGTGATATGTACagag                      <  1:13457509/35‑1 (MQ=255)
              aTCTGGTCTGTCCTTTGGCTGTGATATGTACagag                      <  1:4839200/35‑1 (MQ=255)
               tCTGGTCTGTCCTTTGGCTGTGATATGTACAGAgt                     <  1:2283322/35‑1 (MQ=255)
                  ggTCTGTCCTTTGGCTGTGATATGTACAGAGtgtg                  <  1:13031413/35‑1 (MQ=255)
                    tCTGTCCTTTGGCTGTGATATGTACAGAGTGTGAt                <  1:19368095/35‑1 (MQ=255)
                    tCTGTCCTTTGGCTGTGATATGTACAGAGTGTGAt                <  1:1147911/35‑1 (MQ=255)
                      tGTCCTTTGGCTGTGATATGTACAGAGTGTGATag              <  1:19308537/35‑1 (MQ=255)
                      tGTCCTTTGGCTGTGATATGTACAGAGTGTGATag              <  1:1003191/35‑1 (MQ=255)
                       gTCCTTTGGCTGTGATATGTACAGAGTGTGATaga             <  1:15169932/35‑1 (MQ=255)
                       gTCCTTTGGCTGTGATATGTACAGAGTGTGATaga             <  1:16268283/35‑1 (MQ=255)
                        tCCTTTGGCTGTGATATGTACAGAGTGTGATagag            <  1:9533794/35‑1 (MQ=255)
                         ccTTTGGCTGTGATATGTACAGAGTGTGATAGAgg           <  1:2163937/35‑1 (MQ=255)
                          ntttGNNTGTGATATGTACAGAGTGTGATAGAggg          <  1:14466753/34‑1 (MQ=255)
                          cTTTGGCTGgggcgtgttcgcactcatcgcccggt          >  1:17150137‑M1/1‑9 (MQ=255)
                          cTTTGGCTGgggcgtgttcgcactcatcgcccggt          <  1:1856579‑M1/35‑27 (MQ=255)
                          cTTTGGCTGTGATATGTACAGAGTGTGATAGAggg          <  1:16358173/35‑1 (MQ=255)
                           tttGGCTGgggcgtgttcgcactcatcgcccggta         <  1:5199706‑M1/35‑28 (MQ=255)
                           tttGGCTGgggcgtgttcgcactcatcgcccggta         >  1:16371884‑M1/1‑8 (MQ=255)
                           tttGGCTGgggcgtgttcgcactcatcgcccggta         <  1:3006353‑M1/35‑28 (MQ=255)
                           tttGGCTGgggcgtgttcgcactcatcgcccggta         >  1:2490115‑M1/1‑8 (MQ=255)
                           tttGGCTGgggcgtgttcgcactcatcgcccggta         >  1:15825540‑M1/1‑8 (MQ=255)
                           tttGGCTGTGATATGTACAGAGTGTGATAGAGGGa         <  1:14092314/35‑1 (MQ=255)
                           tttGGCTGTGATATGTACAGAGTGTGATAGAGGGa         <  1:96794/35‑1 (MQ=255)
                            ttGGCTGgggcgtgttcgcactcatcgcccggtaa        <  1:3146775‑M1/35‑29 (MQ=255)
                            ttGGCTGgggcgtgttcgcactcatcgcccggtaa        >  1:20471189‑M1/1‑7 (MQ=255)
                            ttGGCTGgggcgtgttcgcactcatcgcccggtaa        <  1:17492339‑M1/35‑29 (MQ=255)
                            ttGGCTGgggcgtgttcgcactcatcgcccggtaa        <  1:17531671‑M1/35‑29 (MQ=255)
                            ttGGCTGTGATATGTACAGAGTGTGATAGAGGGaa        <  1:20018746/35‑1 (MQ=255)
                             tGGCTGgggcgtgttcgcactcatcgcccggtgac       <  1:11084962‑M1/35‑30 (MQ=255)
                             tGGCTGgggcgtgttcgcactcatcgcccggtaac       <  1:5131829‑M1/35‑30 (MQ=255)
                             tGGCTGgggcgtgttcgcactcatcgcccggtaac       <  1:4515790‑M1/35‑30 (MQ=255)
                              ggCTGgggcgtgttcgcactcatcgcccggtaaca      >  1:2235557‑M1/1‑5 (MQ=255)
                              ggCTGgggcgtgttcgcactcatcgcccggtaaca      >  1:17552912‑M1/1‑5 (MQ=255)
                              ggCTGTGATATGTACAGAGTGTGATAGAGGGAata      <  1:16102430/35‑1 (MQ=255)
                              ggCTGTGATATGTACAGAGTGTGATAGAGGGAata      <  1:10240056/35‑1 (MQ=255)
                              ggCTGTGATATGTACAGAGTGTGATAGAGGGAata      <  1:10159200/35‑1 (MQ=255)
                               gCTGgggcgtgttcgcactcatcgcccggtaacaa     <  1:8188745‑M1/35‑32 (MQ=255)
                               gCTGgggcgtgttcgcactcatcgcccggtaacaa     <  1:741177‑M1/35‑32 (MQ=255)
                               gCTGgggcgtgttcgcactcatcgcccggcaacaa     >  1:5145869‑M1/1‑4 (MQ=255)
                               gCTGTGATATGTACAGAGTGTGATAGAGGGAatat     <  1:14152611/35‑1 (MQ=255)
                               gCTGTGATATGTACAGAGTGTGATAGAGGGAatat     <  1:18933903/35‑1 (MQ=255)
                               gCTGTGATATGTACAGAGTGTGATAGAGGGAatat     >  1:6367181/1‑35 (MQ=255)
                               cttggggcgtgttcgcactcatcgcccggtaacaa     <  1:17040178‑M1/33‑32 (MQ=255)
                                cTGgggcgtgttcgcactcatcgcccggtaacaac    >  1:2667439‑M1/1‑3 (MQ=255)
                                cTGgggcgtgttcgcactcatcgcccggtaacaac    <  1:10387968‑M1/35‑33 (MQ=255)
                                cTGgggcgtgttcgcactcatcgcccggtaacaac    >  1:5714748‑M1/1‑3 (MQ=255)
                                cTGTGATATGTACAGAGTGTGATAGAGGGAATATc    >  1:4065674/1‑35 (MQ=255)
                                cTGTGATATGTACAGAGTGTGATAGAGGGAATATc    >  1:14648706/1‑35 (MQ=255)
                                cTGTGATATGTACAGAGTGTGATAGAGGGAATATc    >  1:7078946/1‑35 (MQ=255)
                                 tgtgATATGTACAGAGTGTGATAGAGGGAATATCt   <  1:15767629/35‑1 (MQ=255)
                                 tgtgATATGTACAGAGTGTGATAGAGGGAATATCt   <  1:9615557/35‑1 (MQ=255)
                                 tGgggcgtgttcgcactcatcgcccggtaacaaca   <  1:9915432‑M1/35‑34 (MQ=255)
                                 tGgggcgtgttcgcactcatcgcccggtaacaaca   >  1:5432708‑M1/1‑2 (MQ=255)
                                 tGgggcgtgttcgcactcatcgcccggtaacaaca   <  1:17947690‑M1/35‑34 (MQ=255)
                                  gtgATATGTACAGAGTGTGATAGAGGGAATATCTg  >  1:10380092/1‑35 (MQ=255)
                                  gtgATATGTACAGAGTGTGATAGAGGGAATATCTg  <  1:1213507/35‑1 (MQ=255)
                                  gtgATATGTACAGAGTGTGATAGAGGGAATATCTg  >  1:3531500/1‑35 (MQ=255)
                                  ggggcgtgttcgcactcatcgcccggtaacaacag  >  1:7700004‑M1/1‑1 (MQ=255)
                                  ggggcgtgttcgcactcatcgcccggtaacaacag  <  1:11242715‑M1/35‑35 (MQ=255)
                                  ggggcgtgttcgcactcatcgcccggtaacaacag  <  1:3451034‑M1/35‑35 (MQ=255)
                                  ggggcgtgttcgcactcatcgcccggtaacaacag  >  1:15583823‑M1/1‑1 (MQ=255)
                                  ggggcgtgttcgcactcatcgcccggtaacaacag  >  1:18204880‑M1/1‑1 (MQ=255)
                                  ggggcgtgttcgcactcatcgcccggtaacaacag  >  1:17972211‑M1/1‑1 (MQ=255)
                                  |                                  
GTTTTACCACTTCAATCTGGTCTGTCCTTTGGCTGTGATATGTACAGAGTGTGATAGAGGGAATATCTG  >  REL606/1213319‑1213387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.