New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 29354872 (0.700)8 (0.090) 5/42 NT 9.4% coding (673/855 nt) ykgD predicted DNA‑binding transcriptional regulator
?REL606 2499664 = 92 (1.020)coding (171/951 nt) talA transaldolase A

Only 100 of 145 total aligned reads displayed.

TTTCCGTGATGTTTCCGGAACCACGCCGCTGGCTGTATTAACAAAGTTGCGTCTACAAATAGCGGCCCA  >  REL606/293514‑293582
                                  |                                  
tttCCGTGATGTTTCCGGAACCACGCCGCTGGCTG                                    <  1:9222910‑M1/35‑1 (MQ=255)
tttCCGTGATGTTTCCGGAACCACGCCGCTGGCTG                                    >  1:20583692‑M1/1‑35 (MQ=255)
 ttCCGTGATGTTTCCGGAACCACGCCGCTGGCTGg                                   >  1:188588‑M1/1‑34 (MQ=255)
  tCCGTGATGTTTCCGGAACCACGCCGCTGGCTGgg                                  >  1:9781566‑M1/1‑33 (MQ=255)
  tCCGTGATGTTTCCGGAACCACGCCGCTGGCTGgg                                  >  1:3438991‑M1/1‑33 (MQ=255)
  tCCGTGATGTTTCCGGAACCACGCCGCTGGCTGgg                                  >  1:12369593‑M1/1‑33 (MQ=255)
   ccGTGATGTTTCCGGAACCACGCCGCTGGCTGggg                                 >  1:7252076‑M1/1‑32 (MQ=255)
   ccGTGATGTTTCCGGAACCACGCCGCTGGCTGggg                                 >  1:5172696‑M1/1‑32 (MQ=255)
   ccGTGATGTTTCCGGAACCACGCCGCTGGCTGTAt                                 <  1:14130847/35‑1 (MQ=255)
    cGTGATGTTTCCGGAACCACGCCGCTGGCTGTAtt                                <  1:17334719/35‑1 (MQ=255)
     gTGATGTTTCCGGAACCACGCCGCTGGCTGgggtt                               >  1:1034722‑M1/1‑30 (MQ=255)
     gTGATGTTTCCGGAACCACGCCGCTGGCTGgggtg                               >  1:14875917‑M1/1‑30 (MQ=255)
     gTGATGTTTCCGGAACCACGCCGCTGGCTGgggga                               >  1:3515771‑M1/1‑30 (MQ=255)
     gTGATGTTTCCGGAACCACGCCGCTGGCTGTATTa                               <  1:9077614/35‑1 (MQ=255)
      tGATGTTTCCGGAACCACGCCGCTGGCTGgggtaa                              >  1:18949629‑M1/1‑29 (MQ=255)
      tGATGTTTCCGGAACCACGCCGCTGGCTGggggtt                              >  1:18537440‑M1/1‑29 (MQ=255)
      tGATGTTTCCGGAACCACGCCGCTGGCTGTATTaa                              <  1:11750467/35‑1 (MQ=255)
      tGATGTTTCCGGAACCACGCCGCTGGCTGTATTaa                              <  1:5566594/35‑1 (MQ=255)
      tGATGTTTCCGGAACCACGCCGCTGGCTGTATTaa                              <  1:6425241/35‑1 (MQ=255)
      tGATGTTTCCGCAACCACGCCGCTGGCTGTATTaa                              <  1:11695710/35‑1 (MQ=255)
      tGATGTTTCAGGAACCACGCCGCTGGCTGTATTaa                              <  1:6405081/35‑1 (MQ=255)
        aTGTTTCCGGAACCACGCCGCTGGCTGTATTAACa                            <  1:20506067/35‑1 (MQ=255)
        aTGTTTCCGGAACCACGCCGCTGGCTGTATTAACa                            <  1:17569596/35‑1 (MQ=255)
         tGTTTCCGGAACCACGCCGCTGGCTGTATTAACaa                           <  1:11502107/35‑1 (MQ=255)
         tGTTTCCGGAACCACGCCGCTGGCTGTATTAACaa                           <  1:382707/35‑1 (MQ=255)
         tGTTTCCGGAACCACGCCGCTGGCTGTATTAACaa                           <  1:414131/35‑1 (MQ=255)
         tGTTTCCGGAACCACGCCGCTGGCTGTATTAACaa                           <  1:433138/35‑1 (MQ=255)
         tGTTTCCGGAACCACGACGCTGGCTGTATTAACaa                           <  1:2546639/35‑1 (MQ=255)
          gTTTCCGGAACCACGCCGCTGGCTGgggtaacaaa                          >  1:20106708‑M1/1‑25 (MQ=255)
          gTTTCCGGAACCACGCCGCTGGCTGgggtaaaaaa                          >  1:7345752‑M1/1‑25 (MQ=255)
          gTTTCCGGAACCACGCCGCTGGCTGTATTAACaaa                          <  1:19338160/35‑1 (MQ=255)
          gTTTCCGGAACCACGCCGCTGGCTGTATTAACaaa                          <  1:3007046/35‑1 (MQ=255)
          gTTTCCGGAACCACGCCGCTGGCTGTATTAACaaa                          <  1:16312459/35‑1 (MQ=255)
           tttCCGGAACCACGCCGCTGGCTGgggttaaaaaa                         >  1:5147344‑M1/1‑24 (MQ=255)
           tttCCGGAACCACGCCGCTGGCTGgggttaaaaaa                         >  1:13866670‑M1/1‑24 (MQ=255)
           tttCCGGAACCACGCCGCTGGCTGTATTAACAAAg                         <  1:2888331/35‑1 (MQ=255)
            ttCCGGAACCACGCCGCTGGCTGTATTAACAAAGt                        <  1:11538400/35‑1 (MQ=255)
            ttCCGGAACCACGCCGCTGGCTGTATTAACAAAGt                        <  1:386948/35‑1 (MQ=255)
             tCCGGAACCACGCCGCTGGCTGTATTAACAAAGtt                       <  1:19885268/35‑1 (MQ=255)
              ccGGAACCACGCCGCTGGCTGgggttaaaaaaatg                      >  1:6788244‑M1/1‑21 (MQ=255)
               cGGAACCACGCCGCTGGCTGTATTAACAAAGTTGc                     <  1:8387883/35‑1 (MQ=255)
                ggAACCACGCCGCTGGCTGTATTAACAAAGTTGCg                    <  1:8639410/35‑1 (MQ=255)
                ggAACCACGCCGCTGGCTGTATTAACAAAGTTGCg                    <  1:4016151/35‑1 (MQ=255)
                ggAACCACGCCGCTGGCTGTATTAACAAAGTTGCg                    <  1:15115190/35‑1 (MQ=255)
                ggAACCACGCCGCTGGCTGTATTAACAAAGTTGCg                    <  1:13650208/35‑1 (MQ=255)
                 gAACCACGCCGCTGGCTGTATTAACAAAGTTGCGt                   <  1:14555826/35‑1 (MQ=255)
                 gAACCACGCCGCTGGCTGTATTAACAAAGTTGCGt                   <  1:2261296/35‑1 (MQ=255)
                 gAACCACGCCGCTGGCTGTATTAACAAAGTTGCGt                   <  1:2425936/35‑1 (MQ=255)
                  aaCCACGCCGCTGGCTGTATTAACAAAGTTGCGTc                  <  1:3089895/35‑1 (MQ=255)
                  aaCCACGCCGCTGGCTGTATTAACAAAGTTGCGTc                  <  1:5817607/35‑1 (MQ=255)
                  aaCCACGCCGCTGGCTGTATTAACAAAGTTGCGTc                  <  1:18193110/35‑1 (MQ=255)
                  aaCCACGCCGCTGGCTGTATTAACAAAGTTGCGTc                  <  1:11377689/35‑1 (MQ=255)
                  aaCAACGCCGCTGGCTGTATTAACAAAGTTGCGTc                  <  1:7823473/35‑1 (MQ=255)
                   nccACNCCGCTGGCTGTATTAACAAAGTTGCGTCt                 <  1:18442253/34‑1 (MQ=255)
                   aacACGCCGCTGGCTGTATTAACAAAGTTGCGTCt                 <  1:14749704/33‑1 (MQ=255)
                   aCCACGCCGCTGGCTGTATTAACAAAGTTGCGTCt                 <  1:188514/35‑1 (MQ=255)
                   aCCACGCCGCTGGCTGTATTAACAAAGTTGCGTCt                 <  1:498211/35‑1 (MQ=255)
                   aCCACGCCGCTGGCTGTATTAACAAAGTTGCGTCt                 <  1:9475214/35‑1 (MQ=255)
                    ccACGCCGCTGGCTGTATTAACAAAGTTGCGTCTa                <  1:19778707/35‑1 (MQ=255)
                     cACGCCGCTGGCTGTATTAACAAAGTTGCGTCTAc               <  1:7870393/35‑1 (MQ=255)
                      aCGCCGCTGGCTGTATTAACAAAGTTGCGTCTACa              <  1:2515218/35‑1 (MQ=255)
                      aCGCCGCTGGCTGTATTAACAAAGTTGCGTCTACa              <  1:7659186/35‑1 (MQ=255)
                      aCGCCGCTGGCTGTATTAACAAAGTTGCGTCTACa              <  1:7491556/35‑1 (MQ=255)
                      aCGCAGCTGGCTGTATTAACAAAGTTGCGTCTACa              <  1:1761421/35‑1 (MQ=255)
                       cgccgcTGGCTGTATTAACAAAGTTGCGTCTACaa             <  1:5151344/35‑1 (MQ=255)
                        gccgcTGGCTGTATTAACAAAGTTGCGTCTACaaa            <  1:13945875/35‑1 (MQ=255)
                         ccgcTGGCTGTATTAACAAAGTTGCGTCTACAAAt           <  1:6417877/35‑1 (MQ=255)
                            ctggctgTATTAACAAAGTTGCGTCTACAAATAGc        <  1:6263998/35‑1 (MQ=255)
                             tggctgTATTAACAAAGTTGCGTCTACAAATAGCg       <  1:8681830/35‑1 (MQ=255)
                             tggctgTATTAACAAAGTTGCGTCTACAAATAGCg       <  1:10114067/35‑1 (MQ=255)
                             tggctgTATTAACAAAGTTGCGTCTACAAATAGCg       <  1:15966116/35‑1 (MQ=255)
                             tggctgTATTAACAAAGTTGCGTCTACAAATAGCg       <  1:12406385/35‑1 (MQ=255)
                             tgactgTATTAACAAAGTTGCGTCTACAAATAGCg       >  1:17762770/4‑35 (MQ=255)
                               gctgTATTAACAAAGTTGCGTCTACAAATAGCGGc     <  1:4839925/35‑1 (MQ=255)
                               gctgTATTAACAAAGTTGCGTCTACAAATAGCGGc     <  1:4213827/35‑1 (MQ=255)
                               gctgTATTAACAAAGTTGCGTCTACAAATAGCGGc     <  1:12401561/35‑1 (MQ=255)
                               gctgTATTAACAAAGTTGCGTCTACAAATAGCGGc     <  1:5915041/35‑1 (MQ=255)
                               gctgTATTAACAAAGTTGCGTCTACAAATAGCGGc     >  1:13133876/1‑35 (MQ=255)
                               gctgTATTAACAAAGTTGCGTCTACAAATAGCGGc     >  1:18202992/1‑35 (MQ=255)
                               gctgTATTAACAAAGTCGCGTCTACAAATAGCGGc     >  1:4854674/1‑35 (MQ=255)
                                ctggggtaaaaaaaatggcaagccccaggaacaac    <  1:15492635‑M1/35‑33 (MQ=255)
                                ctggggtaaaaaaaatggcaagacccaggaacaac    >  1:12909872‑M1/1‑3 (MQ=255)
                                ctgTATTAACAAAGTTGCGTCTACAAATAGCGGcc    <  1:14425561/35‑1 (MQ=255)
                                ctgTATTAACAAAGTTGCGTCTACAAATAGCGGcc    <  1:3916962/35‑1 (MQ=255)
                                ctgTATTAACAAAGTTGCGTCTACAAATAGCGGcc    >  1:5064374/1‑35 (MQ=255)
                                 tggggtaaaaaaaatggcaaggcccaggaacaaca   <  1:3333261‑M1/35‑34 (MQ=255)
                                 tggggtaaaaaaaatggcaagacccaggaacaaca   <  1:19016989‑M1/35‑34 (MQ=255)
                                 tgTATTAACAAAGTTGCGTCTACAAATAGCGGccc   >  1:8966657/1‑35 (MQ=255)
                                 tgTATTAACAAAGTTGCGTCTACAAATAGCGGccc   <  1:15695962/35‑1 (MQ=255)
                                 tgTATTAACAAAGTTGCGTCTACAAATAGCGGccc   >  1:16536983/1‑35 (MQ=255)
                                 tgTATTAACAAAGTTGCGTCTACAAATAGCGGccc   >  1:19340947/1‑35 (MQ=255)
                                 cggggtaaaaaaaatggcaagacccaggaacaaca   <  1:11342634‑M1/34‑34 (MQ=255)
                                  ggggtaaaaaaaatggcaagacccaggaacaacag  >  1:365293‑M1/1‑1 (MQ=255)
                                  ggggtaaaaaaaatggcaagacccaggaacaacag  >  1:9083873‑M1/1‑1 (MQ=255)
                                  ggggtaaaaaaaatggcaagacccaggaacaacag  >  1:5784354‑M1/1‑1 (MQ=255)
                                  gTATTAACAAAGTTGCGTCTACAAATAGCGGcccc  >  1:9064403/1‑34 (MQ=255)
                                  gTATTAACAAAGTTGCGTCTACAAATAGCGGCCCa  <  1:6618559/35‑1 (MQ=255)
                                  gTATTAACAAAGTTGCGTCTACAAATAGCGGCCCa  <  1:5814750/35‑1 (MQ=255)
                                  gTATTAACAAAGTTGCGTCTACAAATAGCGGCCCa  <  1:10175198/35‑1 (MQ=255)
                                  gTATTAACAAAGTTGCGTCTACAAATAGCGGCCCa  >  1:9842907/1‑35 (MQ=255)
                                  |                                  
TTTCCGTGATGTTTCCGGAACCACGCCGCTGGCTGTATTAACAAAGTTGCGTCTACAAATAGCGGCCCA  >  REL606/293514‑293582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.