New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1004939 =65 (0.630)15 (0.180) 5/40 NT 19.2% coding (1138/1401 nt) asnS asparaginyl‑tRNA synthetase
?REL606 1339539 = 72 (0.840)coding (610/1170 nt) yciM hypothetical protein

Only 100 of 139 total aligned reads displayed.

ATGATCTCACCGATGCCCGGAGCCAGAACGTCCATAGCCGCAACGGTTTTACCGTCTTCGTTAAGGCGC  >  REL606/1004905‑1004973
                                  |                                  
gggcgctgtttttatctgccgccgccccttttttt                                    >  1:4638167‑M1/35‑35 (MQ=255)
gggcgctgtttttatctgccgccgccccttttttt                                    <  1:2656777‑M1/1‑1 (MQ=255)
gggcgctgtttttatctgccgccgccccttttttt                                    <  1:13470382‑M1/1‑1 (MQ=255)
gggcgctgtttttatctgccgccgccccttttttt                                    >  1:1569094‑M1/35‑35 (MQ=255)
aTGATCTCACCGATGCCCGGAGCCAGAACGTCCAt                                    >  1:8604723/1‑35 (MQ=255)
aTGATCTCACCGATGCCCGGAGCCAGAACGTCCAt                                    >  1:15983565/1‑35 (MQ=255)
  gcgctgtttttatctgccgccgccccttttttTAg                                  <  1:16897670‑M1/3‑1 (MQ=255)
  gcgctgtttttatctgccgccgccccttttttTAg                                  >  1:8407172‑M1/33‑35 (MQ=255)
  gcgctgtttttatctgccgccgccccttttttTAg                                  >  1:17417505‑M1/33‑35 (MQ=255)
  gATCTCACCGATGCCCGGAGCCAGAACGTCCATAg                                  >  1:9041067/1‑35 (MQ=255)
   cgctgtttttatctgccgccgccccttttttTAGc                                 >  1:8891801‑M1/32‑35 (MQ=255)
   cgctgtttttatctgccgccgccccttttttTAGc                                 <  1:6359075‑M1/4‑1 (MQ=255)
   cgctgtttttatctgccgccgccccttttttTAGc                                 >  1:20230753‑M1/32‑35 (MQ=255)
   aTCTCACCGATGCCCGGAGCCAGAACGTCCATAGc                                 >  1:11791740/1‑35 (MQ=255)
   aTCTCACCGATGCCCGGAGCCAGAACGTCCATAGc                                 >  1:3607828/1‑35 (MQ=255)
    tctcACCGATGCCCGGAGCCAGAACGTCCATAGcc                                >  1:11574680/1‑35 (MQ=255)
    tctcACCGATGCCCGGAGCCAGAACGTCCATAGcc                                >  1:12562502/1‑35 (MQ=255)
        aCCGATGCCCGGAGCCAGAACGTCCATAGCCGCaa                            >  1:19235775/1‑35 (MQ=255)
         ccGATGCCCGGAGCCAGAACGTCCATAGCCGCAAc                           >  1:11838205/1‑35 (MQ=255)
          cGATGCCCGGAGCCAGAACGTCCATAGCCGCAACg                          >  1:359859/1‑35 (MQ=255)
          cGATGCCCGGAGCCAGAACGTCCATAGCCGCAACg                          >  1:12125648/1‑35 (MQ=255)
          cGATGCCCGGAGCCAGAACGTCCATAGCCGCAACg                          >  1:18182616/1‑35 (MQ=255)
           gATGCCCGGAGCCAGAACGTCCATAGCCGCAACgg                         >  1:7529608/1‑35 (MQ=255)
           gATGCCCGGAGCCAGAACGTCCATAGCCGCAACgg                         >  1:18036973/1‑35 (MQ=255)
           gATGCCCGGAGCCAGAACGTCCATAGCCGCAACgg                         >  1:6758501/1‑35 (MQ=255)
           gATGCCCGGAGCCAGAACGTCCATAGCCGCAACgg                         >  1:5393696/1‑35 (MQ=255)
           gATGCCCGGAGCCAGAACGTCCATAGCCGCAACgg                         >  1:13908832/1‑35 (MQ=255)
              gCCCGGAGCCAGAACGTCCATAGCCGCAACGGttt                      >  1:7567281/1‑35 (MQ=255)
              gCCCGGAGCCAGAACGTCCATAGCCGCAACGGttt                      >  1:8245190/1‑35 (MQ=255)
              gCCCGGAGCCAGAACGTCCATAGCCGCAACGGttt                      >  1:13995042/1‑35 (MQ=255)
              ccccGGACCCACCCCGTCCATAGCAGCAACGGttt                      <  1:2463190/34‑1 (MQ=12)
               cccGGAGCCAGAACGTCCATAGCCGCAACGGtttt                     >  1:20184798/1‑35 (MQ=255)
               cccGGAGCCAGAACGTCCATAGCCGCAACGGtttt                     >  1:20195510/1‑35 (MQ=255)
               cccGGAGCCAGAACGTCCATAGCCGCAACGGtttt                     >  1:16333041/1‑35 (MQ=255)
               cccGGAGCCAGAACGTCCATAGCCGCAACGGtttt                     >  1:11509252/1‑35 (MQ=255)
                ccGGAGCCAGAACGTCCATAGCCGCAACGGTTTTa                    >  1:2632542/1‑35 (MQ=255)
                ccGGAGCCAGAACGTCCATAGCCGCAACGGGTTTa                    >  1:8580026/1‑35 (MQ=255)
                 cGGAGCCAGAACGTCCATATCCGCAACGGTTTTAc                   >  1:2406243/1‑35 (MQ=255)
                  ggAGCCAGAACGTCCATAGCCGCAACGGTTTTAcc                  >  1:14920341/1‑35 (MQ=255)
                   gAGCCAGAACGTCCATAGCCTCAACGGTTTTACCg                 >  1:19148621/1‑35 (MQ=255)
                   gAGCCAGAACGTCCATAGCCGCAACGGTTTTACCg                 >  1:5300333/1‑35 (MQ=255)
                   gAGCCAGAACGTCCATAGCCGCAACGGTTTTACCg                 >  1:15197873/1‑35 (MQ=255)
                    aGCCAGAACGTCCATAGCCGCAACGGTTTTACCGt                >  1:5262039/1‑35 (MQ=255)
                    aGCCAGAACGTCCATAGCCGCAACGGTTTTACCGt                >  1:11800188/1‑35 (MQ=255)
                    aGCCAGAACGTCCATAGCCGCAACGGTTTTACCGt                >  1:4946048/1‑35 (MQ=255)
                     gCCAGAACGTCCATAGCCGCAACGGTTTTACCGTc               >  1:5883186/1‑35 (MQ=255)
                     gCCAGAACGTCCATAGCCGCAACGGTTTTACCGTc               >  1:1400572/1‑35 (MQ=255)
                     cccccccttttttTAGCCGCAACGGTTTTACCGTc               >  1:3366226‑M1/14‑35 (MQ=255)
                     cccccccttttttTAGCCGCAACGGTTTTACCGTc               >  1:7033477‑M1/14‑35 (MQ=255)
                      ccAGAACGTCCATAGCCGCAACGGTTTTACCGTCt              >  1:4737478/1‑35 (MQ=255)
                      ccAGAACGTCCATAGCCGCAACGGTTTTACCGTCt              >  1:13154366/1‑35 (MQ=255)
                      ccAGAACGTCCATAGCCGCAACGGTTTTACCGTCt              >  1:1523372/1‑35 (MQ=255)
                       cccccctttttTAGCCGCAACGGTTTTACCGTCtt             >  1:8138933‑M1/12‑35 (MQ=255)
                       cAGAACGTCCATAGCCGCAACGGTTTTACCGTCtt             >  1:6277119/1‑35 (MQ=255)
                       cAGAACGTCCATAGCCGCAACGGTTTTACCGTCtt             >  1:11274962/1‑35 (MQ=255)
                       cAGAACGTCCATAGCCGCAACGGTTTTACCGTCtt             >  1:15651942/1‑35 (MQ=255)
                       cAGAACGTCCATAGCCGCAACGGTTTTACCGTCtt             >  1:15845864/1‑35 (MQ=255)
                       cAGAACGTCCATAGCCGCAACGGTTTTACCGTCtt             >  1:18088961/1‑35 (MQ=255)
                       accccttttttTAGCCGCAACGGTTTTACCGTCtt             >  1:18316337‑M1/12‑35 (MQ=255)
                        ccccttttttTAGCCGCAACGGTTTTACCGTCTTc            >  1:18545788‑M1/11‑35 (MQ=255)
                        aGAACGTCCATAGCCGCAACGGTTTTACCGTCTTc            >  1:20064881/1‑35 (MQ=255)
                        aGAACGTCCATAGCCGCAACGGTTTTACCGTCTTc            >  1:4227152/1‑35 (MQ=255)
                         gAACGTCCATAGCCGCAACGGTTTTACCGTCTTCg           >  1:137527/1‑35 (MQ=255)
                         gAACGTCCATAGCCGCAACGGTTTTACCGTCTTCg           >  1:18314247/1‑35 (MQ=255)
                         cccttttttTAGCCGCAACGGTTTTACCGTCTTCg           >  1:7652799‑M1/10‑35 (MQ=255)
                         cccctttttTAGCCGCAACGGTTTTACCGTCTTCg           >  1:2974395‑M1/10‑35 (MQ=255)
                          aaCGTCCATAGCCGCAACGGTTTTACCGTCTTCGt          >  1:17325057/1‑35 (MQ=255)
                          aaCGTCCATAGCCGCAACGGTTTTACCGTCTTCGt          >  1:13288136/1‑35 (MQ=255)
                          aaCGTCCATAGCCGCAACGGTTTTACCGTCTTCGt          >  1:13035794/1‑35 (MQ=255)
                           cctttttTAGCCGCAACGGTTTTACCGTCTTCGtt         >  1:13030755‑M1/8‑35 (MQ=255)
                           cctttttTAGCCGCAACGGTTTTACCGTCTTCGtt         >  1:10963992‑M1/8‑35 (MQ=255)
                           aCGTCCATAGCCGCAACGGTTTTACCGTCTTCGtt         >  1:7717854/1‑35 (MQ=255)
                           aCGTCCATAGCCGCAACGGTTTTACCGTCTTCGtt         >  1:8199681/1‑35 (MQ=255)
                            ttttttTAGCCGCAACGGTTTTACCGTCTTCGTTa        >  1:19717281‑M1/7‑35 (MQ=255)
                            ttttttTAGCCGCAACGGTTTTACCGTCTTCGTTa        >  1:18681435‑M1/7‑35 (MQ=255)
                            ttttttTAGCCGCAACGGTTTTACCGTCTTCGTTa        >  1:16008294‑M1/7‑35 (MQ=255)
                             tttttTAGCCGCAACGGTTTTACCGTCTTCGTTaa       >  1:910705‑M1/6‑35 (MQ=255)
                             ttcttTAGCCGCAACGGTTTTACCGTCTTCGTTaa       >  1:1589813‑M1/6‑35 (MQ=255)
                             gTCCATAGCCGCAACGGTTTTACCGTCTTCGTTaa       >  1:6848831/1‑35 (MQ=255)
                             gTCCATAGCCGCAACGGTTTTACCGTCTTCGTTaa       >  1:7370155/1‑35 (MQ=255)
                             gTCCATAGCCGCAACGGTTTTACCGTCTTCGTTaa       >  1:17087726/1‑35 (MQ=255)
                              ttttTAGCCGCAACGGTTTTACCGTCTTCGTTAAg      >  1:1198533‑M1/5‑35 (MQ=255)
                              ttttTAGCCGCAACGGTTTTACCGTCTTCGTTAAg      >  1:2672908‑M1/5‑35 (MQ=255)
                              ttttTAGCCGCAACGGTTTTACCGTCTTAGTTAAg      >  1:11365122‑M1/5‑35 (MQ=255)
                               tttTAGCCGCAACGGTTTTACCGTCTTCGTTAAgg     >  1:6918697‑M1/4‑35 (MQ=255)
                               tttTAGCCGCAACGGTTTTACCGTCTTCGTTAAgg     >  1:12795527‑M1/4‑35 (MQ=255)
                               tttTAGCCGCAACGGTTTTACCGTATTCGTTAAgg     >  1:11400412‑M1/4‑35 (MQ=255)
                               ccATAGCCGCAACGGTTTTACCGTCTTCGTTAAgg     >  1:16582207/1‑35 (MQ=255)
                                ttTAGCCGCAACGGTTTTACCGTCTTCGTTAAGgc    >  1:8093975‑M1/3‑35 (MQ=255)
                                ttTAGCCGCAACGGTTTTACCGTCTTCGTTAAGgc    >  1:4295859‑M1/3‑35 (MQ=255)
                                ttTAGCCGCAACGGTTTTACCGTCTTCGTTAAGgc    >  1:5476019‑M1/3‑35 (MQ=255)
                                ttTAGCCGCAACGGTTTTACAGTCTTCGTTAAGgc    >  1:8482125‑M1/3‑35 (MQ=255)
                                cATAGCCGCAACGGTTTTACCGTCTTCGTTAAGgc    >  1:1765881/1‑35 (MQ=255)
                                cATAGCCGCAACGGTTTTACCGTCTTCGTTAAGgc    >  1:13932114/1‑35 (MQ=255)
                                 tTAGCCGCAACGGTTTTACCGTCTTCGTTAAGgcg   >  1:18870936‑M1/2‑35 (MQ=255)
                                 tTAGCCGCAACGGTTTTACCGTCTTCGTTAAGgcg   >  1:12651748‑M1/2‑35 (MQ=255)
                                 tTAGCCGCAACGGTTTTACCGTCTTCGTTAAGgcg   >  1:10920229‑M1/2‑35 (MQ=255)
                                 aTAGCCGCAACGGTTTTACCGTCTTTGTTAAGgcg   >  1:10558115/1‑35 (MQ=255)
                                  TAGCCGCAACGGTTTTACCGTCTTCGTTAAGgcgc  >  1:7646794‑M1/1‑35 (MQ=255)
                                  TAGCCGCAACGGTTTTACCGTCTTCGTTAAGgcgc  >  1:3330763‑M1/1‑35 (MQ=255)
                                  |                                  
ATGATCTCACCGATGCCCGGAGCCAGAACGTCCATAGCCGCAACGGTTTTACCGTCTTCGTTAAGGCGC  >  REL606/1004905‑1004973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.