New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3320231NA (NA)11 (0.180) 3/28 NT 25.5% intergenic (‑312/+118) tldD/yhdP predicted peptidase/conserved membrane protein, predicted transporter
?REL606 = 3686161 55 (0.540)coding (401/741 nt) yiaT hypothetical protein

Only 100 of 441 total aligned reads displayed.

TGGAATACCGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTCCGCAGCCGCAGAGGCTTT  >  REL606/3686128‑3686195
                                 |                                  
    aTACCGATAGCTCCCCCACCCAGCCGTTGCTGTTa                               >  1:11899864/1‑35 (MQ=255)
     tACCGATAGCTCCCCCACCCAGCCGTTGCTGTTAt                              >  1:10428884/1‑35 (MQ=255)
      aCCGATAGCTCCCCCACCCAGCCGTTGCTGTTATc                             >  1:4015937/1‑35 (MQ=255)
        cGATAGCCCCCCCCCCCAGCCGTTGCTGTTATCCa                           <  1:19965424/35‑1 (MQ=25)
        cGATAGCCCCCCCCCCCAGCCGTTGCTGTTATCCa                           <  1:7359730/35‑1 (MQ=25)
         gATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAg                          >  1:349134/1‑35 (MQ=255)
          aTAGCCCCCCCCCCCAGCCGTTGCTGTTATCCAGa                         <  1:6408385/35‑1 (MQ=25)
           tAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGaa                        >  1:14222753/1‑35 (MQ=255)
           tAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGaa                        >  1:2573127/1‑35 (MQ=255)
             gCTCCCCCCCCCAGCCGTTGCTGTTATCCAGAACg                      <  1:6835682/35‑1 (MQ=255)
             gCTCCCCCCCCCAGCCGTTGCTGTTATCCAGAACg                      <  1:12249796/35‑1 (MQ=255)
               cccccccCCCAGCCGTTGCctgatgcgacgcgtaa                    >  1:19169819‑M2/2‑19 (MQ=255)
               cccccccCCCAGCCGTTGCctgatgcgacgcgtaa                    >  1:18260981‑M2/2‑19 (MQ=255)
               cccccccCCCAGCCGTTGCctgatgcgacgcgtaa                    >  1:12051679‑M2/2‑19 (MQ=255)
               cccccccCCCAGCCGTTGCctgatgcgacgcgtaa                    >  1:12119399‑M2/2‑19 (MQ=255)
                cccccCCCCAGCCGTTGCctgatgcgacgcgtaat                   >  1:13845880‑M2/1‑18 (MQ=255)
                cccccCCCCAGCCGTTGCctgatgcgacgcgtaat                   >  1:1003579‑M2/1‑18 (MQ=255)
                 ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg                  >  1:17035659‑M2/1‑17 (MQ=255)
                 ccccCCCCAGCCGTTGCctgatgcgacgcgtaatg                  >  1:18881135‑M2/1‑17 (MQ=255)
                  cccccccaGCCGTTGCctgatgcgacgctgtgcgt                 >  1:16414833‑M2/1‑16 (MQ=255)
                  cccccccaGCCGTTGCctgatgcgacgcgtaatgc                 >  1:18118968‑M2/1‑16 (MQ=255)
                  cccccccaGCCGTTGCctgatgcgacgcgtaatgc                 >  1:14693484‑M2/1‑16 (MQ=255)
                  cccccccaGCCGTTGCctgatgcgacgcgtaatgc                 >  1:4892767‑M2/1‑16 (MQ=255)
                  cccccccaGCCGTTGCctgatgcgacgcgtaatgc                 >  1:1520610‑M2/1‑16 (MQ=255)
                   ccccccaGCCGTTGCctgatgcgacgcgtaatgcg                >  1:1623568‑M2/1‑15 (MQ=255)
                    cccccagcCGTTGCctgatgcgacgcgtaatgcgt               >  1:6955427‑M2/3‑14 (MQ=255)
                    cccccagcCGTTGCctgatgcgacgcgtaatgcgt               >  1:13294247‑M2/3‑14 (MQ=255)
                    cccccagcCGTTGCctgatgcgacgcgtaatgcgt               >  1:11006735‑M2/3‑14 (MQ=255)
                     ccccagCCGTTGCctgatgcgacgcgtaatgcgtc              >  1:3352112‑M2/2‑13 (MQ=255)
                     ccccagCCGTTGCctgatgcgacgcgtaatgcgtc              >  1:575924‑M2/2‑13 (MQ=255)
                      gccagCCGTTGCctgatgcgacgctgtgcgtctta             >  1:1456709‑M2/2‑12 (MQ=255)
                      gccagCCGTGGCctgatgcgacgctgtgcgtctta             >  1:7605133‑M2/2‑12 (MQ=255)
                      cccaGCCGTTGCctgatgcgacgcgtaatgcgtct             >  1:15600769‑M2/1‑12 (MQ=255)
                      cccaGCCGTTGCctgatgcgacgcgtaatgcgtct             >  1:8022352‑M2/1‑12 (MQ=255)
                       ccaGCCGTTGCctgatgcgacgctgtgcgtcttat            >  1:2405370‑M2/1‑11 (MQ=255)
                       ccaGCCGTTGCctgatgcgacgcgtaatgcgtctt            >  1:17345753‑M2/1‑11 (MQ=255)
                        caGCCGTTGCctgatgcgacgctgtgcgtcttatc           >  1:18981135‑M2/1‑10 (MQ=255)
                        caGCCGTTGCctgatgcgacgctgtgcgtcttatc           <  1:16696645‑M2/35‑26 (MQ=255)
                         aGCCGTTGCctgatgcgacgctgtgcgtcttatca          <  1:15961213‑M2/35‑27 (MQ=255)
                         aGCCGTTGCctgatgcgacgctgtgcgtcttatca          <  1:9123500‑M2/35‑27 (MQ=255)
                         aGCCGTTGCctgatgcgacgcgtaatgcgtcttat          <  1:445628‑M2/35‑27 (MQ=255)
                         aGCCGTTGCctgatgcgacgcgtaatgcgtcttat          <  1:5421568‑M2/35‑27 (MQ=255)
                         aGCCGTTGCctgatgcgacgcgtaatgcgtcttat          <  1:13479481‑M2/35‑27 (MQ=255)
                          gCCGTTGCctgatgcgacgctgtgcgtcttatcag         >  1:15337758‑M2/1‑8 (MQ=255)
                          gCCGTTGCctgatgcgacgctgtgcgtcttatcag         >  1:1372887‑M2/1‑8 (MQ=255)
                          gCCGTTGCctgatgcgacgctgtgcgtcttatcag         >  1:11381129‑M2/1‑8 (MQ=255)
                          gCCGTTGCctgatgcgacgcgtaatgcgtcttttc         <  1:273817‑M2/35‑28 (MQ=255)
                          gCCGTTGCctgatgcgacgcgtaatgcgtcttatc         <  1:8221403‑M2/35‑28 (MQ=255)
                          gCCGTTGCctgatgcgacgcgtaatgcgtcttatc         >  1:845169‑M2/1‑8 (MQ=255)
                          gCCGTTGCctgatgcgacgcgtaatgcggcttatc         <  1:8829210‑M2/35‑28 (MQ=255)
                          gCCGTTGActgatgcgacgctgtgcgtcttatcag         >  1:18050283‑M2/1‑8 (MQ=255)
                           ccGTTGCctgatgcgacgctgtgcgtcttatcagg        <  1:9722182‑M2/35‑29 (MQ=255)
                           ccGTTGCctgatgcgacgctgtgcgtcttatcagg        >  1:4525432‑M2/1‑7 (MQ=255)
                           ccGTTGCctgatgcgacgctgtgcgtcttatcagg        <  1:1149429‑M2/35‑29 (MQ=255)
                           ccGTTGCctgatgcgacgctgtgcgtcttatcagg        <  1:12533080‑M2/35‑29 (MQ=255)
                           ccGTTGCctgatgcgacgcgtaatgcgtcttatca        <  1:1056423‑M2/35‑29 (MQ=255)
                           ccGTTGCctgatgcgacgcgtaatgcgtcttatca        >  1:17818305‑M2/1‑7 (MQ=255)
                           ccGTTGCctgatgcgacgcgtaatgcgtcttatca        <  1:1274857‑M2/35‑29 (MQ=255)
                           ccGTTGCctgatgcgacgcgtaatgcgtattatca        >  1:16563682‑M2/1‑7 (MQ=255)
                            cGTTGCctgatgcgacgctgtgcgtcttatcaggc       >  1:10250004‑M2/1‑6 (MQ=255)
                            cGTTGCctgatgcgacgctgtgcgtcttatcaggc       <  1:10319906‑M2/35‑30 (MQ=255)
                            cGTTGCctgatgcgacgcgtaatgcgtcttatcag       >  1:15820756‑M2/1‑6 (MQ=255)
                            cGTTGCctgatgcgacgcgtaatgagtcttatcag       >  1:17997388‑M2/1‑6 (MQ=255)
                             gTTGCctgatgcgacgctgtgcgtcttatcaggcc      <  1:6545229‑M2/35‑31 (MQ=255)
                             gTTGCctgatgcgacgcgtaatgcgtcttatcagg      <  1:10070518‑M2/35‑31 (MQ=255)
                             gTTGCctgatgcgacgcgtaatgcgtcttatcagg      >  1:11657467‑M2/1‑5 (MQ=255)
                             gTTGCctgatgcgacgcgtaatgcgtcttatcagg      <  1:6737280‑M2/35‑31 (MQ=255)
                             gTTGCctgatgcgacgcgtaatgcgtcttatcagg      <  1:14472761‑M2/35‑31 (MQ=255)
                              ttGCctgatgcggcgctgtgcgtcttatcaggcct     >  1:520958‑M2/1‑4 (MQ=255)
                              ttGCctgatgcgacgctgtgcgtcttatcaggcct     >  1:17556986‑M2/1‑4 (MQ=255)
                              ttGCctgatgcgacgctgtgcgtcttatcaggcct     >  1:4318302‑M2/1‑4 (MQ=255)
                              ttGCctgatgcgacgctgtgcgtcttatcaggcct     >  1:16498386‑M2/1‑4 (MQ=255)
                              ttGCctgatgcgacgcgtaatgcgtcttatcaggc     >  1:9384337‑M2/1‑4 (MQ=255)
                              ttGCctgatgcgacgcgtaatgcgtcttatcaggc     >  1:14789082‑M2/1‑4 (MQ=255)
                              ttGCctgatgcgacgcgtaatgcgtcttatcaggc     <  1:20192809‑M2/35‑32 (MQ=255)
                              ttGCctgatgcgacgcgtaatgcgtcttatcaggc     >  1:10779152‑M2/1‑4 (MQ=255)
                              ttGCctgatgcgacgcgtaatgcgtcttatcaggc     >  1:20430051‑M2/1‑4 (MQ=255)
                              ttGCctgatgcgacgcgtaatgcgtcttatcaggc     >  1:6081075‑M2/1‑4 (MQ=255)
                              ttGCctgatgcgacgcgtaatgcgtcttatcaggc     >  1:2850711‑M2/1‑4 (MQ=255)
                              ttGCctgatgcgacgcgtaatgcgtcttatcaggc     >  1:2163620‑M2/1‑4 (MQ=255)
                              ttGCctgatgcgacgcgtaatgcgtcttatcaggc     <  1:7231305‑M2/35‑32 (MQ=255)
                               tGCctgattcgacgcgtaatgcgtcttatcaggcc    <  1:5962873‑M2/35‑33 (MQ=255)
                               tGCctgatgcgacgctgtgcgtcttatcaggccta    <  1:958612‑M2/35‑33 (MQ=255)
                               tGCctgatgcgacgctgtgcgtcttatcaggccta    <  1:19523867‑M2/35‑33 (MQ=255)
                               tGCctgatgcgacgctgtgcgtcttatcaggccta    <  1:19820968‑M2/35‑33 (MQ=255)
                               tGCctgatgcgacgctgtgcgtcttatcaggccta    <  1:1302286‑M2/35‑33 (MQ=255)
                               tGCctgatgcgacgcgtaatgcgtcttatcaggcc    <  1:11833382‑M2/35‑33 (MQ=255)
                               tGCctgatgcgacgcgtaatgcgtcttatcaggcc    >  1:5636643‑M2/1‑3 (MQ=255)
                               tGCctgatgcgacgcgtaatgcgtcttatcaggcc    <  1:14932826‑M2/35‑33 (MQ=255)
                               tGCctgatgcgacgcgtaatgcgtcttatcaggcc    >  1:3210125‑M2/1‑3 (MQ=255)
                               tGCctgatgcgacgcgtaatgcgtcttatcaggcc    >  1:16134293‑M2/1‑3 (MQ=255)
                                gCctgatgcgacgctgtgcgtcttatcaggcctac   <  1:7177197‑M2/35‑34 (MQ=255)
                                gCctgatgcgacgctgtgcgtcttatcaggcctac   >  1:3816026‑M2/1‑2 (MQ=255)
                                gCctgatgcgacgctgtgcgtcttatcaggcctac   <  1:18607350‑M2/35‑34 (MQ=255)
                                gCatgatgcgacgctgtgcgtcttatcaggcctac   >  1:14021672‑M2/1‑2 (MQ=255)
                                 cctgatgcgacgctgtgcgtcttatcaggcctaca  <  1:16856383‑M2/35‑35 (MQ=255)
                                 cctgatgcgacgctgtgcgtcttatcaggcctaca  <  1:742724‑M2/35‑35 (MQ=255)
                                 cctgatgcgacgctgtgcgtcttatcaggcctaca  <  1:3034122‑M2/35‑35 (MQ=255)
                                 cctgatgcgacgcgtaatgcgtcttatcaggccta  <  1:20594243‑M2/35‑35 (MQ=255)
                                 cctgatgcgacgcgtaatgcgtcttatcaggccta  <  1:8544162‑M2/35‑35 (MQ=255)
                                 |                                  
TGGAATACCGATAGCTCCCCCACCCAGCCGTTGCTGTTATCCAGAACGTCCGCAGCCGCAGAGGCTTT  >  REL606/3686128‑3686195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.