New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 312869 =100 (0.970)13 (0.150) 6/40 NT 13.5% coding (56/951 nt) yahI predicted carbamate kinase‑like protein
?REL606 4351443 = 83 (0.970)intergenic (+51/‑87) groEL/yjeI chaperonin GroEL/hypothetical protein

Only 100 of 162 total aligned reads displayed.

GCCATTGGTGGCAACAGCATTATCAAAGATAACGCCAGCCAGTCGATTGAGCATCAGGCGGAGGCGGTG  >  REL606/312835‑312903
                                  |                                  
tcttatactagaaagatgaccaaaagaaaaacccc                                    >  1:1344165‑M1/35‑35 (MQ=255)
tcttatactagaaagatgaccaaaagaaaaacccc                                    >  1:14595200‑M1/35‑35 (MQ=255)
tcttatactagaaagatgaccaaaagaaaaacccc                                    >  1:4410676‑M1/35‑35 (MQ=255)
tcttatactagaaagatgaccaaaagaaaaacccc                                    <  1:3626134‑M1/1‑1 (MQ=255)
gCCATTGGTGGCAACAGCATTATCAAAGATAACgc                                    <  1:13688427/35‑1 (MQ=255)
gCCATTGGTGGCAACAGCATTATCAAAGATAACgc                                    >  1:4504004/1‑35 (MQ=255)
gCCATTGGTGGCAACAGCATTATCAAAGATAACgc                                    >  1:12916888/1‑35 (MQ=255)
 ccATTGGTGGCAACAGCATTATCAAATATAACgcc                                   >  1:16670639/1‑35 (MQ=255)
 ccATTGGTGGCAACAGCATTATCAAAGATAACgcc                                   >  1:7563909/1‑35 (MQ=255)
 ccATTGGTGGCAACAGCATTATCAAAGATAACgcc                                   <  1:11857070/35‑1 (MQ=255)
  cATTGGTGGCAACAGCATTATCAAAGATAACgcca                                  >  1:8432539/1‑35 (MQ=255)
  cATTGGTGGCAACAGCATTATCAAAGATAACgcca                                  >  1:2971026/1‑35 (MQ=255)
  cATTGGTGGCAACAGCATTATCAAAGATAACgcca                                  <  1:17429466/35‑1 (MQ=255)
   aTTGGTGGCAACAGCATTATCAAAGATAACgccag                                 <  1:13045708/35‑1 (MQ=255)
   aTTGGTGGCAACAGCATTATCAAAGATAACgccag                                 <  1:16114250/35‑1 (MQ=255)
     tggtggCAACAGCATTATCAAAGATAACgccagcc                               <  1:3814766/35‑1 (MQ=255)
     tggtggCAACAGCATTATCAAAGATAACgccagcc                               >  1:5897416/1‑35 (MQ=255)
     tagtggCAACAGCATTATCAAAGATAACgccagcc                               >  1:224228/3‑35 (MQ=255)
     gggtggCAACAGCATTATCAAATATAACgccagcc                               <  1:10064866/34‑1 (MQ=255)
      ggtggCAACAGCATTATCAAAGATAACgccagcca                              >  1:927945/1‑35 (MQ=255)
      ggtggCAACAGCATTATCAAAGATAACgccagcca                              >  1:9760213/1‑35 (MQ=255)
      ggtggCAACAGCATTATCAAAGATAACgccagcca                              >  1:14500089/1‑35 (MQ=255)
       gtggCAACAGCATTATCAAAGATAACGccagccag                             >  1:7291721/1‑35 (MQ=255)
       gtggCAACAGCATTATCAAAGATAACGccagccag                             <  1:13607571/35‑1 (MQ=255)
        tggCAACAGCATTATCAAAGATAACGCCAGCCAGt                            >  1:5626839/1‑35 (MQ=255)
        tggCAACAGCATTATCAAAGATAACGCCAGCCAGt                            >  1:2311062/1‑35 (MQ=255)
        tggCAACAGCATTATCAAAGATAACGCCAGCCAGt                            >  1:2059179/1‑35 (MQ=255)
         ggCAACAGCATTATCAAAGATAACGCCAGCCAGTc                           >  1:7136652/1‑35 (MQ=255)
         ggCAACAGCATTATCAAAGATAACGCCAGCCAGTc                           >  1:18625689/1‑35 (MQ=255)
          gCAACAGCATTATCAAAGATAACGCCAGCCAGTCg                          >  1:17284303/1‑35 (MQ=255)
           cAACAGCATTATCAAAGATAACGCCAGCCAGTCGa                         >  1:576569/1‑35 (MQ=255)
           cAACAGCATTATCAAAGATAACGCCAGCCAGTCGa                         >  1:2175723/1‑35 (MQ=255)
           cAACAGCATTATCAAAGATAACGCCAGCCAGTCGa                         >  1:6006218/1‑35 (MQ=255)
            aaCAGCATTATCAAAGATAACGTCAGCCAGTCGAt                        >  1:19211928/1‑35 (MQ=255)
            aaCAGCATTATCAAAGATAACGCCAGCCAGTCGAt                        >  1:6335655/1‑35 (MQ=255)
            aaCAGCATTATCAAAGATAACGCCAGCCAGTCGAt                        >  1:8803076/1‑35 (MQ=255)
            aaCAGCATTATCAAAGATAACGCCAGCCAGTCGAt                        >  1:1946266/1‑35 (MQ=255)
            aaCAGCATTATCAAAGATAACGCCAGCCAGTCGAt                        >  1:14472985/1‑35 (MQ=255)
            aaCAGCATTATCAAAGATAACGCCAGCCAGTCGAt                        >  1:4874394/1‑35 (MQ=255)
            aaCAGCATTATCAAAGATAACGCCAGCCAGTCGAt                        >  1:11014492/1‑35 (MQ=255)
            aaCAGCATTATCAAAGATAACGCCAGCAAGTCGAt                        <  1:10624043/35‑1 (MQ=255)
              cAGCATTATCAAAGATAACGCCAGCCAGTCGATTg                      >  1:2022259/1‑35 (MQ=255)
              cAGCATTATCAAAGATAACGCCAGCCAGTCGATTg                      >  1:1780149/1‑35 (MQ=255)
              cAGCATTATCAAAGATAACGCCAGCCAGTCGATTg                      >  1:1434576/1‑35 (MQ=255)
              cAGCATTATCAAAGATAACGCCAGCCAGTCGATTg                      >  1:13695088/1‑35 (MQ=255)
              cAGCATTATCAAAGATAACGCCAGCCAGTCGATTg                      >  1:16199539/1‑35 (MQ=255)
               aGCATTATCAAAGATAACGCCAGCCAGTCGATTGa                     >  1:8608457/1‑35 (MQ=255)
               aGCATTATCAAAGATAACGCCAGCCAGTCGATTGa                     >  1:4587995/1‑35 (MQ=255)
                gaaTTAACAAAAAAACCCCCAGCCAGTCGATTGAg                    <  1:154295/33‑1 (MQ=9)
                gCATTATCAAAGATAACGCCAGCCAGTCGATTGAg                    >  1:2479780/1‑35 (MQ=255)
                gCATTATCAAAGATAACGCCAGCCAGTCGATTGAg                    >  1:2438703/1‑35 (MQ=255)
                 cATTATCGAAGATAACGCCAGCCAGTCGATTGAGc                   >  1:15558008/1‑35 (MQ=255)
                 cATTATCAAAGATAACGCCAGCCAGTCGATTGAGc                   >  1:2897433/1‑35 (MQ=255)
                 cATTATCAAAGATAACGCCAGCCAGTCGATTGAGc                   >  1:6205241/1‑35 (MQ=255)
                  aTTATCAAAGATAACGCCAGCCAGTCGATTGAGCa                  >  1:15724082/1‑35 (MQ=255)
                  aTTATCAAAGATAACGCCAGCCAGTCGATTGAGCa                  >  1:7380708/1‑35 (MQ=255)
                   ttATCAAAGATAACGCCAGCCAGTCGATTGAGCAt                 >  1:10382482/1‑35 (MQ=255)
                    tATCAAAGATAACGCCAGCCAGTCGATTGAGCATc                >  1:11538147/1‑35 (MQ=255)
                    tATCAAAGATAACGCCAGCCAGTCGATTGAGCATc                >  1:8590515/1‑35 (MQ=255)
                     aTCAAAGATAACGCCAGCCAGTCGATTGAGCATCa               >  1:14983604/1‑35 (MQ=255)
                      aaaaaGAAACCCCCAGCCAGTCGATTGAGCATCag              <  1:16495586/33‑1 (MQ=21)
                      aaaaaAATACCGCCAGCCAGTCGATTGAGCATCag              <  1:11286792/33‑1 (MQ=21)
                      aaaaaAATACCCCCAGCCAGTCGATTGAGCATCag              <  1:10815239/33‑1 (MQ=18)
                       cAAAGATAACGCCAGCCAGTCGATTGAGCATCagg             >  1:11812107/1‑35 (MQ=255)
                       cAAAGATAACGCCAGCCAGTCGATTGAGCATCagg             >  1:19926318/1‑35 (MQ=255)
                       cAAAGATAACGCCAGCCAGTCGATTGAGCATCagg             >  1:12581001/1‑35 (MQ=255)
                       cAAAGATAACGCCAGCCAGTCGATTGAGCATCagg             >  1:17491268/1‑35 (MQ=255)
                       aaaaaaaacccCCAGCCAGTCGATTGAGCATCagg             >  1:14517769‑M1/12‑35 (MQ=255)
                       aaaaGAAACCCCCAGCCAGTCGATTGAGCATCagg             <  1:14105015/34‑1 (MQ=25)
                        aaaGATACCCCCAGCCAGTCGATTGAGCATCaggc            <  1:10084414/35‑1 (MQ=37)
                        aaaGATAACGCCAGCCAGTCGATTGAGCATCaggc            <  1:10465204/35‑1 (MQ=255)
                        aaaAATACCCCCAGCCAGTCGATTGAGCATCaggc            <  1:10788307/35‑1 (MQ=21)
                         aaGATAGCGCCAGCCAGTCGATTGAGCATCaggcg           <  1:3836892/35‑1 (MQ=255)
                         aaGATAACGCCAGCCAGTCGATTGAGCATCaggcg           >  1:3391330/1‑35 (MQ=255)
                          agaaacccCCAGCCAGTCGATTGAGCATCaggcgg          >  1:9149837‑M1/9‑35 (MQ=255)
                          aGATAACGCCAGCCAGTCGATTGAGCATCaggcgg          >  1:18544802/1‑35 (MQ=255)
                           gATAACGCCAGCCAGTCGATTGAGCATCaggcgga         >  1:8062440/1‑35 (MQ=255)
                           gATAACGCCAGCCAGTCGATTGAGCATCaggcgga         >  1:19393896/1‑35 (MQ=255)
                           gATAACGCCAGCCAGTCGATTGAGCATCaggcgga         >  1:16394523/1‑35 (MQ=255)
                           aatacccCCAGCCAGTCGATTGAGCATCaggcgga         >  1:3744699‑M1/8‑35 (MQ=255)
                            aaacccCCAGCCAGTCGATTGAGCATCaggcggag        >  1:6734916‑M1/7‑35 (MQ=255)
                            aaaaccCCAGCCAGTCGATTGAGCATCaggcggag        >  1:10763399‑M1/7‑35 (MQ=255)
                            aTAACGCCAGCCAGTCGATTGAGCATCaggcggag        >  1:17001539/1‑35 (MQ=255)
                            aTAACGCCAGCCAGTCGATTGAGCATCaggcggag        >  1:12054516/1‑35 (MQ=255)
                             tAACGCCAGCCAGTCGATTGAGCATCaggcggagg       >  1:2507008/1‑35 (MQ=255)
                             tAACGCCAGCCAGTCGATTGAGCATCaggcggagg       >  1:13129128/1‑35 (MQ=255)
                              acccCCAGCCAGTCGATTGAGCATCaggcggaggc      >  1:1979475‑M1/5‑35 (MQ=255)
                              acccCCAGCCAGTCGATTGAGCATCaggcggaggc      >  1:4612409‑M1/5‑35 (MQ=255)
                               cccCCAGCCAGTCGATTGAGCATCaggcggaggcg     >  1:5882290‑M1/4‑35 (MQ=255)
                               aCGCCAGCCAGTCGATTGAGCATCaggcggaggcg     >  1:14121902/1‑35 (MQ=255)
                                cGCCAGCCAGTCGATTGAGCATCaggcggcggcgg    >  1:4211882/1‑35 (MQ=255)
                                cGCCAGCCAGTCGATTGAGCATCaggcggaggcgg    >  1:16942996/1‑35 (MQ=255)
                                 gccagccaGTCGATTGAGCATCaggcggaggcgg  >  1:18647038/1‑34 (MQ=255)
                                 gccagccaGTCGATTGAGCATCAGGCGGAGGCGGt   <  1:678174/35‑1 (MQ=255)
                                 gccagccaGTCGATTGAGCATCAGGCGGAGGCGGt   <  1:9367090/35‑1 (MQ=255)
                                 cCCAGCCAGTCGATTGAGCATCAGGCGGAGGCGGt   >  1:18224127‑M1/2‑35 (MQ=255)
                                  CCAGCCAGTCGATTGAGCAtcaggcggaggcgggg  <  1:8915560‑M1/35‑3 (MQ=255)
                                  CCAGCCAGTCGATTGAGCAtcaggcggaggcgggg  <  1:13167774‑M1/35‑3 (MQ=255)
                                  CCAGCCAGTCGATTGAGCATCAGGCGGAGGCGGTg  >  1:6595998‑M1/1‑35 (MQ=255)
                                  CCAGCCAGTCGATTGAGCATCAGGCGGAGGCGGTg  >  1:2757921‑M1/1‑35 (MQ=255)
                                  |                                  
GCCATTGGTGGCAACAGCATTATCAAAGATAACGCCAGCCAGTCGATTGAGCATCAGGCGGAGGCGGTG  >  REL606/312835‑312903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.