Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 2,448,493 IS186 (+) +6 bp 66.5% intergenic (+24/+21) nupC → / ← yfeA nucleoside (except guanosine) transporter/predicted diguanylate cyclase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2448493 =30 (0.470)59 (0.660) 32/42 NT 58.4% intergenic (+24/+26) nupC/yfeA nucleoside (except guanosine) transporter/predicted diguanylate cyclase
?REL606 = 2774196 NA (NA)noncoding (1343/1343 nt) IS186 repeat region
* ? REL606 = 244849832 (0.500)64 (0.710) 34/42 NT 58.8% intergenic (+29/+21) nupC/yfeA nucleoside (except guanosine) transporter/predicted diguanylate cyclase
?REL606 2772854 = NA (NA)noncoding (1/1343 nt) IS186 repeat region

Only 100 of 118 total aligned reads displayed.

TGTAAGACCATACATAAAAAAGCCGGGGATAATTccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2448465‑2448498
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  >  REL606/2772854‑2772887
                                                                    
TGTAAGACCATACATAAAAAAGCCGGGGATAATTC                                   <  1:16798709/35‑1
TGTAAGACAATACATAAAAAAGCCGGGGATAATTC                                   <  1:16446885/35‑1
 GTAAGACCATACATAAAAAAGCCGGGGATAATTCC                                  <  1:2888579/35‑1
  TAAGACCATACATAAAAAAGCCGGGGATAATTCCC                                 >  1:7348046/1‑35
  TAAGACCATACATAAAAAAGCCGGGGATAATTCCC                                 >  1:3650722/1‑35
   AAGACCATACATAAAAAAGCCGGGGATAATTCCCA                                >  1:11534607/1‑35
    AGACCATACATAAAAAAGCCGGGGATAATTCCCAT                               >  1:10541703/1‑35
    AGACCATACATAAAAAAGCCGGGGATAATTCCCAT                               >  1:11600311/1‑35
     GACCATACATAAAAAAGCCGGGGATAATTCCCATA                              >  1:6211445/1‑35
     GACCATACATAAAAAAGCCGGGGATAATTCCCATA                              >  1:12350927/1‑35
      ACCATACATAAAAAAGCCGGGGATAATTCCCATAA                             <  1:19149020/35‑1
      ACCATACATAAAAAAGCCGGGGATAATTCCCATAA                             <  1:19869602/35‑1
      ACCATACATAAAAAAGCCGGGGATAATTCCCATAA                             <  1:20490648/35‑1
       CCATACATAAAAAAGCCGGGGATAATTCCCATAAG                            >  1:16011946/1‑35
       CCATACATAAAAAAGCCGGGGATAATTCCCATAAG                            >  1:19883648/1‑35
        CATACATAAAAAAGCCGGGGATAATTCCCATAAGC                           <  1:17190071/35‑1
        CATACATAAAAAAGCCGGGGATAATTCCCATAAGC                           <  1:18999955/35‑1
         ATACATAAAAAAGCCGGGGATAATTCCCATAAGCG                          <  1:15303238/35‑1
         ATACATAAAAAAGCCGGGGATAATTCCCATAAGCG                          <  1:9595250/35‑1
          TACATAAAAAAGCCGGGGATAATTCCCATAAGCGC                         <  1:17704988/35‑1
          TACATAAAAAAGCCGGGGATAATTCCCATAAGCGC                         <  1:4799173/35‑1
           ACATAAAAAAGCCGGGGATAATTCCCATAAGCGCT                        <  1:14786978/35‑1
           ACATAAAAAAGCCGGGGATAATTCCCATAAGCGCT                        >  1:11804998/1‑35
           ACATAAAAAAGCCGGGGATAATTCCCATAAGCGCT                        <  1:2146779/35‑1
            CATAAAAAAGCCGGGGATGATTCCCATAAGCGCTA                       <  1:19409856/35‑1
            CATAAAAAAGCCGGGGATGATTCCCATAAGCGCTA                       >  1:139947/1‑35
            CATAAAAAAGCCGGGGATAATTCCCATAAGCGCTA                       <  1:8121690/35‑1
            CATAAAAAAGCCGGGGATAATTCCCATAAGCGCTA                       <  1:13256105/35‑1
            CATAAAAAAGCCGGGGATAATTCCCATAAGCGCTA                       <  1:3875163/35‑1
            CATAAAAAAGCCGGGGATAATTCCCATAAGCGCTA                       >  1:12555111/1‑35
            CATAAAAAAGCCGGGGATAATTCCCATAAGCGCTA                       >  1:807083/1‑35
            CATAAAAAAGCCGGGGATAATTCCCATAAGCGCTA                       >  1:18646502/1‑35
             ATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAA                      >  1:20036515/1‑35
             ATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAA                      <  1:15190322/35‑1
               AAAAAAGCCGGGGATAATTCCCATAAGCGCTAACT                    <  1:6156741/35‑1
                AAAAAGCCGGGGATAATTCCCATAAGCGCTAACTT                   >  1:15700963/1‑35
                AAAAAGCCGGGGATAATTCCCATAAGCGCTAACTT                   >  1:9332881/1‑35
                AAAAAGCCGGGGATAATTCCCATAAGCGCTAACTT                   <  1:6507339/35‑1
                AAAAAGCCGGGGATAATTCCCATAAGCGCTAACTT                   >  1:2105052/1‑35
                 AAAAGCCGGGGATAATTCCCATAAGCGCTAACTTA                  >  1:13549893/1‑35
                  AAAGCCGGGGATAATTCCCATAAGCGCTAACTTAA                 <  1:20571398/35‑1
                  AAAGCCGGGGATAATTCCCATAAGCGCTAACTTAA                 >  1:14414013/1‑35
                   AAGCCGGGGATAATTCCCATAAGCGCTAACTTAAG                >  1:9139407/1‑35
                   AAGCCGGGGATAATTCCCATAAGCGCTAACTTAAG                <  1:367403/35‑1
                    AGCCGGGGATAATTCCCATAAGCGCTAACTTAAGG               <  1:11797012/35‑1
                    AGCCGGGGATAATTCCCATAAGCGCTAACTTAAGG               >  1:19879271/1‑35
                     GCCGGGGATAATTCCCATAAGCGCTAACTTAAGGG              <  1:19440744/35‑1
                     GCCGGGGATAATTCCCATAAGCGCTAACTTAAGGG              <  1:11036365/35‑1
                       CGGTGATAATTCCCATAAGCGCTAACTTAAGGGTT            >  1:8531378/1‑35
                       CGGGGATAATTCCCATAAGCGCTAACTTAATGGTT            >  1:203950/1‑35
                       CGGGGATAATTCCCATAAGCGCTAACTTAAGGGTT            >  1:2061989/1‑35
                       CGGGGATAATTCCCATAAGCGCTAACTTAAGGGTT            <  1:20117976/35‑1
                       CGGGGATAATTCCCATAAGCGCTAACTTAAGGGTT            >  1:1929512/1‑35
                       CGGGGATAATTCCCATAAGCGCTAACTTAAGGGTT            >  1:10202189/1‑35
                        GGGGATAATTCCCATAAGCGCTAACTTAAGGGTTG           >  1:4582549/1‑35
                        GGGGATAATTCCCATAAGCGCTAACTTAAGGGTTG           >  1:6593301/1‑35
                         GGGATAATTCCCATAAGCGCTAACTTAAGGGTTGT          >  1:743459/1‑35
                          GGATAATTCCCATAAGCGCTAACTTAAGGGTTGTG         >  1:1908678/1‑35
                          GGATAATTCCCATAAGCGCTAACTTAAGGGTTGTG         >  1:7481101/1‑35
                          GGATAATTCCCATAAGCGCTAACTTAAGGGTTGTG         <  1:12675952/35‑1
                           GATAATTCCCATAAGCGCTAACTTAAGGGTTGTGG        <  1:16547122/35‑1
                           GATAATTCCCATAAGCGCTAACTTAAGGGTTGTGG        <  1:7316999/35‑1
                           GATAATTCCCATAAGCGCTAACTTAAGGGTTGTGG        <  1:12344453/35‑1
                           GATAATTCCCATAAGCGCTAACTTAAGGATTGTGG        >  1:15461687/1‑35
                            ATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGT       <  1:17315807/35‑1
                            ATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGT       <  1:2812843/35‑1
                            ATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGT       >  1:46352/1‑35
                             TAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTA      <  1:14308957/35‑1
                             TAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTA      <  1:9365536/35‑1
                             TAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTA      <  1:2906743/35‑1
                             TAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTA      <  1:379599/35‑1
                             TAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTA      >  1:7016889/1‑35
                             TAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTA      >  1:16973051/1‑35
                             TAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTA      >  1:5150979/1‑35
                             TAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTA      >  1:17776354/1‑35
                              AATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAT     <  1:9811270/35‑1
                               ATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATT    <  1:2975043/35‑1
                                TTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTA   >  1:1375266/1‑35
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:17343877/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:9445790/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:10619169/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:9183660/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  >  1:3020293/1‑35
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:8553806/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:3444667/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:17154412/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:17089772/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:3770090/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  >  1:14590709/1‑35
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:17008911/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:6688927/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  >  1:4116791/1‑35
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:6530258/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:5035711/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  >  1:15954740/1‑35
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:5235844/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:5414698/35‑1
                                 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  >  1:5341827/1‑35
                                 TCCAATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:3872060/35‑1
                                 TCCAATAAGCGCTAACTTAAGGGTTGTGGTATTAC  <  1:2935583/35‑1
                                                                    
TGTAAGACCATACATAAAAAAGCCGGGGATAATTccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2448465‑2448498
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC  >  REL606/2772854‑2772887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.