New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 188990587 (0.850)12 (0.130) 5/42 NT 17.4% coding (1053/1374 nt) yebQ predicted transporter
?REL606 2379272 = 38 (0.420)coding (970/1014 nt) usg hypothetical protein

AGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1889869‑1889905
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgCCATCAGCGCGCCGCCAAAGCGAACGTTATCGGC  >  REL606/2379272‑2379305
                                                                       
AGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCC                                      <  1:13781996/35‑1
 ctGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCT                                     <  1:14719510/33‑1
 GGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCT                                     <  1:12234309/35‑1
 GGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCT                                     <  1:18127280/35‑1
 GGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCT                                     <  1:1340560/35‑1
 GGGTTGTTCATCATGGATGCGGGGCTTTTTTCCCT                                     <  1:13041265/35‑1
  GGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTG                                    <  1:3070340/35‑1
  GGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTG                                    <  1:16546096/35‑1
                    cgcGGCTTTTTTCCCTGCCATCAGCGCGCCGCCAA                  <  1:2480669/32‑1
                    ccGGGCTTTTTTCCCTGCCATCAGCGCGCCGCCAA                  <  1:3328865/33‑1
                       gggTTTTTTCCCTGCCATCAGCGCGCCGCCAAAGC               <  1:8997447/32‑1
                       GGCTTTTTTCCCTGCCATCAGCGCGCCGCCAAAGC               <  1:5650751/35‑1
                        GCTTTTTTCCCTGCCATCAGCGCGCCGCCAAAGCG              <  1:1300602/35‑1
                        GCTTTTTTCCCTGCCATCAGCGCGCAGCCAAAGCG              <  1:13900200/35‑1
                          gTTTTTCCCTGCCATCAGCGCGCCGCCAAAGCGAA            <  1:1392205/34‑1
                          TTTTTTTCCTGCCATCAGCGCGCCGCCAAAGCGAA            <  1:4676770/35‑1
                           TTTTTCCCTGCCATCAGCGCGCCGCCAAAGCGAAC           <  1:7328979/35‑1
                            TTTTCCCTGCCATCAGCGCGCCGCCAAAGCGAACG          <  1:5668091/35‑1
                            TTTTCCCTGCCATCAGCGCGCCGCCAAAGCGAACG          <  1:15476900/35‑1
                            TTTTCCCTGCCATCAGCGCGCCGCCAAAGCGAACG          <  1:16873137/35‑1
                             TTTCCCTGCCATCAGCGCGCCGCCAAAGCGAACGT         <  1:7138812/35‑1
                              tctCCTGCCATCAGCGCGCCGCCAAAGCGAACGTT        <  1:17616630/32‑1
                              TTCCCTGCCATCAGCGCGCCGCCAAAGCGAACGTT        <  1:3193041/35‑1
                              TTCCCTGCCATCAGCGCGCCGCCAAAGCGAACGTT        <  1:9634183/35‑1
                               aCCCTGCCATCAGCGCGCCGCCAAAGCGAACGTTA       <  1:11081078/34‑1
                                tCCTGCCATCAGCGCGCCGCCAAAGCGAACGTTAT      <  1:8408564/34‑1
                                 CCTGCCATCAGCGCGCCGCCAAAGCGAACGTTATC     <  1:11349244/35‑1
                                 CCTGCCATCAGCGCGCCGCCAAAGCGAACGTTATC     <  1:8993298/35‑1
                                  CTGCCATCAGCGCGCCGCCAAAGCGAACGTTATCG    <  1:13931828/35‑1
                                  CTGCCATCAGCGCGCCGCCAAAGCGAACGTTATCG    >  1:14095834/1‑35
                                  CTGCCATCAGCGCGCCGCCAAAGCGAACGTTATCG    <  1:3037976/35‑1
                                   TGCCATCAGCGCGCTGCCAAAGCGAACGTTATCGG   >  1:16245478/1‑35
                                   TGCCATCAGCGCGCCGCCAAAGCGAACGTTATCGG   <  1:15609270/35‑1
                                   TGCCATCAGCGCGCCGCCAAAGCGAACGTTATCGG   <  1:1375175/35‑1
                                   TGCCATCAGCGCGCCGCCAAAGCGAACGTTATCGG   <  1:741783/35‑1
                                   TGCCATCAGCGCGCCGCCAAAGCGAACGTTATCGG   >  1:3229861/1‑35
                                   TGCCATCAGCGCGCCGCCAAAGCGAACGTTATCGG   <  1:18630399/35‑1
                                   TGCCATCAGCGCGCCGCCAAAGCGAACGTTATCGG   >  1:9024228/1‑35
                                   TGCCACCAGCGCGCCGCCAAAGCGAACGTTATCGG   <  1:20603326/35‑1
                                    GCCATCAGCGCGCCGCCAAAGCGAACGTTATCGGC  <  1:4353121/35‑1
                                    GCCATCAGCGCGCCGCCAAAGCGAACGTTATCGGC  >  1:3704523/1‑35
                                    GCCATCAGCGCGCCGCCAAAGCGAACGTTATCGGC  >  1:11999660/1‑35
                                                                       
AGGGTTGTTCATCATGGCTGCGGGGCTTTTTTCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1889869‑1889905
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgCCATCAGCGCGCCGCCAAAGCGAACGTTATCGGC  >  REL606/2379272‑2379305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.