New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 288132343 (0.420)10 (0.130) 4/36 NT 12.7% coding (855/1230 nt) yqeG predicted transporter
?REL606 3882315 = 105 (1.360)coding (103/816 nt) atpB F0F1 ATP synthase subunit A

CGCTTTCTATGCTGCCGAACGCCCCAGCATGGCTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGA  >  REL606/2881289‑2881357
                                  |                                  
cgcTTTCTATGCTGCCGAACGCCCCAGCATGGCTG                                    >  1:15975265‑M1/1‑35 (MQ=255)
cgcTTTCTATGCTGCCGAACGCCCCAGCATGGCTG                                    >  1:16622793‑M1/1‑35 (MQ=255)
cgcTTTCTATGCTGCCGAACGCCCCAGCATGGCTG                                    <  1:8473964‑M1/35‑1 (MQ=255)
cgcTTTCTATGCTGCCGAACGCCCCAGCATGGCTG                                    <  1:15324657‑M1/35‑1 (MQ=255)
cgcTTTCTATGCTGCCGAACGCCCCAGCATGGCTG                                    <  1:13485244‑M1/35‑1 (MQ=255)
cgcTTTCTATGCTGCCGAACGCCCCAGCATGGCTG                                    <  1:8176615‑M1/35‑1 (MQ=255)
 gcTTTCTATGCTGCCGAACGCCCCAGCATGGCTGg                                   >  1:4999300‑M1/1‑34 (MQ=255)
 gcTTTCTATGCTGCCGAACGCCCCAGCATGGCTGg                                   >  1:11460935‑M1/1‑34 (MQ=255)
 gcTTTCTATGCTGCCGAACGCCCCAGCATGGCTGg                                   >  1:11502783‑M1/1‑34 (MQ=255)
 gcTTTCTATGCTGCCGAACGCCCCAGCATGGCTGg                                   >  1:13255920‑M1/1‑34 (MQ=255)
 gcTTTCTATGCTGCCGAACGCCCCAGCATGGCTGg                                   >  1:19842002‑M1/1‑34 (MQ=255)
  cTTTCTATGCTGCCGAACGCCCCAGCATGGCTGgg                                  >  1:19209049‑M1/1‑33 (MQ=255)
  cTTTCTATGCTGCCGAACGCCCCAGCATGGCTGTc                                  <  1:8188631/35‑1 (MQ=255)
   tttCTATGCTGCCGAACGCCCCAGCATGGCTGggg                                 >  1:3615120‑M1/1‑32 (MQ=255)
   tttCTATGCTGCCGAACGCCCCAGCATGGCTGTCa                                 <  1:18575455/35‑1 (MQ=255)
   tttCTATGCTGCAGAACGCCCCAGCATGGCTGTCa                                 <  1:17399079/35‑1 (MQ=255)
    ttCTATGCTGCCGAACGCCCCAGCATGGCTGTCaa                                <  1:11490193/35‑1 (MQ=255)
    ttCTATGCTGCCGAACGCCCCAGCATGGCTGTCaa                                <  1:6324508/35‑1 (MQ=255)
    ttCTATGCTGCCGAACGCCCCAGCATGGCTGTCaa                                <  1:6042549/35‑1 (MQ=255)
      cTATGCTGCCGAACGCCCCAGCATGGCTGgggggt                              >  1:13872137‑M1/1‑29 (MQ=255)
      cTATGCTGCCGAACGCCCCAGCATGGCTGgggggt                              >  1:1728966‑M1/1‑29 (MQ=255)
      cTATGCTGCCGAACGCCCCAGCATGGCTGTCAAtt                              <  1:5801090/35‑1 (MQ=255)
       tATGCTGCCGAACGCCCCAGCATGGCTGggggttt                             >  1:18111616‑M1/1‑28 (MQ=255)
       tATGCTGCCGAACGCCCCAGCATGGCTGggggttt                             >  1:10238695‑M1/1‑28 (MQ=255)
       tATGCTGCCGAACGCCCCAGCATGGCTGTCAAttt                             <  1:19180101/35‑1 (MQ=255)
        aTGCTGCCGAACGCCCCAGCATGGCTGggggtttt                            >  1:11357587‑M1/1‑27 (MQ=255)
        aTGCTGCCGAACGCCCCAGCATGGCTGgggggttt                            >  1:7373631‑M1/1‑27 (MQ=255)
        aTGCTGCCGAACGCCCCAGCATGGCTGggggggtt                            >  1:18690715‑M1/1‑27 (MQ=255)
        aTGCTGCCGAACGCCCCAGAATGGCTGTCAATTTc                            <  1:7528677/35‑1 (MQ=255)
         tgctgcCGAACGCCCCAGCATGGCTGgggggtttc                           >  1:15954982‑M1/1‑26 (MQ=255)
         tgctgcCGAACGCCCCAGCATGGCCGGCAATTTcc                           >  1:7680796/1‑35 (MQ=38)
          gctgcCGAACGCCCCAGCATGGCTGgggggtttcc                          >  1:19061584‑M1/1‑25 (MQ=255)
          cctgcCGAACGCCCCAGCATGGCTGTCAATTTCCg                          <  1:8841489/34‑1 (MQ=255)
            tgcCGAACGCCCCAGCATGGCTGTCAATTTCCggg                        <  1:11022912/35‑1 (MQ=255)
            tgcCGAACGCCCCAGCATGGCTGTCAATTTCCggg                        <  1:15913168/35‑1 (MQ=255)
             gcCGAACGCCCCAGCATGGCTGgggggttttgggg                       >  1:6219193‑M1/1‑22 (MQ=255)
             gcCGAACGCCCCAGCATGGCTGTCAATTTCCGGGa                       <  1:10209987/35‑1 (MQ=255)
              ccGAACGCCCCAGCATGGCTGTCAATTTCCGGGat                      <  1:8179254/35‑1 (MQ=255)
              ccGAACGCCCCAGCATGGCTGTCAATTTCCGGGat                      <  1:15931681/35‑1 (MQ=255)
               cGAACGCCCCAGCATGGCTGTCAATTTCCGGGatt                     <  1:12626997/35‑1 (MQ=255)
                gAACGCCCCAGCATGGCTGTCAATTTCCGGGatta                    <  1:11935359/35‑1 (MQ=255)
                gAACGCCCCAGCATGGCTGTCAATTTCCGGGatta                    <  1:18774156/35‑1 (MQ=255)
                 aaCGCCCCAGCATGGCTGTCAATTTCCGGGattat                   <  1:7656776/35‑1 (MQ=255)
                 aaCGCCCCAGCATGGCTGTCAATTTCCGGGattat                   <  1:20056443/35‑1 (MQ=255)
                 aaCGCCCCAGCATGGCTGTCAATTTCCGGGattat                   <  1:13042887/35‑1 (MQ=255)
                 aaCGCCCCAGCATGGCTGTCAATTTCCGGGattat                   <  1:1253314/35‑1 (MQ=255)
                  aCGCCCCAGCATGGCTGTCAATTTCCGGGattatt                  <  1:15893486/35‑1 (MQ=255)
                  aCGCCCCAGCATGGCTGTCAATTTCCGGGattatt                  <  1:9117289/35‑1 (MQ=255)
                  aCGCCCCAGCATGGCTGTCAATTTCCGGGattatt                  <  1:15854771/35‑1 (MQ=255)
                  aCGCCCCAGCATGGCTGGCAATTTCCGGGattatt                  <  1:2522584/35‑1 (MQ=255)
                    gCCCCAGCATGGCTGTCAATTTCCGGGATTATTGt                <  1:6295705/35‑1 (MQ=255)
                    gCCCCAGCATGGCTGTCAATTTCCGGGATTATTGt                <  1:15416007/35‑1 (MQ=255)
                    gCCCCAGCATGGCTGTCAATTTCCGGGATTATAGt                <  1:440598/35‑1 (MQ=255)
                    gCCCCAGCATGGCTGTCAATTTCAGGGATTATTGt                <  1:7464268/35‑1 (MQ=255)
                      cccAGCATGGCTGTCAATTTCCGGGATTATTGTCg              <  1:1797246/35‑1 (MQ=255)
                      cccAGCATGGCCGGCAATTTCCGGGATTATTGTCg              >  1:19444221/1‑35 (MQ=37)
                       ccAGCATGGCTGTCAATTTCCGGGATTATTGTCGc             <  1:2460609/35‑1 (MQ=255)
                       ccAGCATGGCTGTCAATTTCCGGGATTATTGTCGc             <  1:12521180/35‑1 (MQ=255)
                         aGCATGGCTGTCAATTTCCGGGATTATTGTCGCag           <  1:15612370/35‑1 (MQ=255)
                         aGCATGGCTGTCAATTTCCGGGATTATTGTCGCag           <  1:8804947/35‑1 (MQ=255)
                         aGCATGGCTGTCAATTTCCGGGATTATTGTCGCag           <  1:18825319/35‑1 (MQ=255)
                         aGCATGCCTGTCATTTTCCGGGATTATTGTCGCag           >  1:4020150/1‑35 (MQ=37)
                          gCATGGCTGTCAATTTCCGGGATTATTGTCGCagt          <  1:16960041/35‑1 (MQ=255)
                           cATGGCTGTCAATTTCCGGGATTATTGTCGCagta         <  1:10778306/35‑1 (MQ=255)
                           cATGGCTGTCAATTTCCGGGATTATTGTCGCagta         <  1:5752542/35‑1 (MQ=255)
                            aTGGCTGTCAATTTCCGGGATTATTGTCGCagtag        <  1:6173636/35‑1 (MQ=255)
                            aTGGCTGTCAATTTCCGGGATTATTGTCGCagtag        <  1:7673821/35‑1 (MQ=255)
                            aTGGCTGTCAATTTCCGGGATTATTGTCGCagtag        <  1:10109036/35‑1 (MQ=255)
                             tGGCTGTCAATTTCCGGGATTATTGTCGCagtagt       <  1:3091080/35‑1 (MQ=255)
                             tGGCTGTCAATTTCCGGGATTATTGTCGCagtagt       <  1:19450684/35‑1 (MQ=255)
                             tGGCTGTCAATTTCCGGGATTATTGTCGCagtagt       <  1:7250001/35‑1 (MQ=255)
                             tGGCTGTAAATTTCCGGGATTATTGTCGCagtagt       <  1:18183025/35‑1 (MQ=255)
                              ggCTGTCAATTTCCGGGATTATTGTCGCAGTAGtt      <  1:4703049/35‑1 (MQ=255)
                              ggCTGTCAATTTCCGGGATTATTGTCGCAGTAGtt      <  1:7501737/35‑1 (MQ=255)
                              ggCTGTCAATTTCCGGGATTATTGTCGCAGTAGtt      <  1:14812708/35‑1 (MQ=255)
                              ggCTGTCAATTTCCGGGATTATTGTCGCAGTAGtt      <  1:1033424/35‑1 (MQ=255)
                               gCTGTCAATTTCCGGGATTATTGTCGCAGTAGTTg     >  1:9151782/1‑35 (MQ=255)
                               gCTGTCAATTTCCGGGATTATTGTCGCAGTAGTTg     >  1:7126409/1‑35 (MQ=255)
                                cTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGc    <  1:10998982/35‑1 (MQ=255)
                                cTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGc    <  1:13448622/35‑1 (MQ=255)
                                cTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGc    >  1:15095791/1‑35 (MQ=255)
                                cTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGc    <  1:16699325/35‑1 (MQ=255)
                                cTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGc    >  1:17847503/1‑35 (MQ=255)
                                cTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGc    <  1:1916799/35‑1 (MQ=255)
                                cTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGc    >  1:6816725/1‑35 (MQ=255)
                                 tGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCg   >  1:19827207/1‑35 (MQ=255)
                                 tGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCg   >  1:1810472/1‑35 (MQ=255)
                                 tGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCg   >  1:3052380/1‑35 (MQ=255)
                                 tGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCg   <  1:3390584/35‑1 (MQ=255)
                                 tGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCg   >  1:8574291/1‑35 (MQ=255)
                                 tGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCg   >  1:16271235/1‑35 (MQ=255)
                                  gTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGa  <  1:20492431/35‑1 (MQ=255)
                                  gTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGa  <  1:3392575/35‑1 (MQ=255)
                                  gTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGa  >  1:4340920/1‑35 (MQ=255)
                                  |                                  
CGCTTTCTATGCTGCCGAACGCCCCAGCATGGCTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGA  >  REL606/2881289‑2881357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.