New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 805852 =114 (1.110)112 (1.380) 8/38 NT 55.4% intergenic (+279/‑300) bioD/uvrB dethiobiotin synthetase/excinuclease ABC subunit B
?REL606 = 1193676 NA (NA)noncoding (62/768 nt) IS1 repeat region

Only 100 of 866 total aligned reads displayed.

ACCAGTTAAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/805864‑805852
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCCACTGGAGCACCTCAAAAACACCATCATAC  <  REL606/1193676‑1193643
             |||||                                  
  CAGCTAAAAAAAAAAAAAGCCACTGGAGCACCTCA                 <  1:8133529/35‑1
   AGTTAATAAAAAAAAAAGCCACTGGAGCACCTCAA                <  1:9022072/35‑1
    ggTAAAAAAAAAAAAAGCCACTGGAGCACCTCAAA               <  1:6611989/33‑1
    gcgAAAAAAAAAAAAAGCCACTGGAGCACCTCAAA               <  1:20366474/32‑1
    gcgAAAAAAAAAAAAAGCCACTGGAGCACCTCAAA               <  1:3017733/32‑1
    gcTAAAAAAAAAAAAAGCCACTGGAGCACCTCAAA               <  1:14540080/33‑1
    caTAAAAAAAAAAAAAGCCACTGGAGCACCTCAAA               <  1:20584961/33‑1
     tgAAAAAAAAAAAAAGCCACTGGAGCACCTCAAAA              <  1:6106262/33‑1
      ggAAAAAAAAAAAAGCCACTGGAGCACCTCAAAAA             <  1:15043562/33‑1
      TAATAAAAAAAAAAGCCACTGGAGCACCTCAAAAA             <  1:9512571/35‑1
      TAAAAAAAAAAAAAGCCACTGGAGCACCTCAAAAA             <  1:17135306/35‑1
      TAAAAAAAAAAAAAGCCACTGGAGCACCTCAAAAA             <  1:15853762/35‑1
       gAAAAAAACAAAAGCCACTGGAGCACCTCAAAAAC            <  1:4938840/34‑1
       gAAAAAAAAAAAAGCCACTGGAGCACCTCAAAAAC            <  1:12771244/34‑1
       aatAAAAAAAAAAGCCACTGGAGCACCTCAAAAAC            <  1:1896962/32‑1
       AAAAAAAACAAAAGCCACTGGAGCACCTCAAAAAC            <  1:14024876/35‑1
       AAAAAAAAAAAAAGCCACTGGAGCACCTCAAAAAC            <  1:7625078/35‑1
       AAAAAAAAAAAAAGCCACTGGAGCACCTCAAAAAC            <  1:924548/35‑1
       AAAAAAAAAAAAAGCCACTGGAGCACCTCAAAAAC            <  1:4320416/35‑1
       AAAAAAAAAAAAAGCCACTGGAGCACCTCAAAAAC            <  1:4136707/35‑1
        AAAAAAACAAAAGCCACTGGAGCACCTCAAAAACA           <  1:5637369/35‑1
        AAAAAAACAAAAGCCACTGGAGCACCTCAAAAACA           <  1:19907240/35‑1
        AAAAAAAAAAAAGCCACTGGAGCACCTCAAAAACA           <  1:14429800/35‑1
         tAAAAACAAAAGCCACTGGAGCACCTCAAAAACAC          <  1:728430/34‑1
         aagAAAAAAAAGCCACTGGAGCACCTCAAAAACAC          <  1:12891553/32‑1
         AAAAACAAAAAGCCACTGGAGCACCTCAAAAACAC          <  1:20480776/35‑1
         AAAAAACAAAAGCCACTGGAGCACCTCAAAAACAC          <  1:3398724/35‑1
         AAAAAACAAAAGCCACTGGAGCACCTCAAAAACAC          <  1:15661384/35‑1
         AAAAAACAAAAGCCACTGGAGCACCTCAAAAACAC          <  1:8785700/35‑1
         AAAAAAAAAAAGCCACTGGAGCACCTCAAAAACAC          <  1:17919730/35‑1
         AAAAAAAAAAAGCCACTGGAGCACCTCAAAAACAC          <  1:16655367/35‑1
          AAAAACAAAAGCCACTGGAGCACCTCAAAAACACN         <  1:194437/35‑1
          AAAAACAAAAGCCACTGGAGCACCTCAAAAACACC         <  1:13302439/35‑1
          AAAAACAAAAGCCACTGGAGCACCTCAAAAACACC         <  1:14254635/35‑1
          AAAAACAAAAGCCACTGGAGCACCTCAAAAACACC         <  1:11918011/35‑1
          AAAAAAAAAAGCCACTGGAGCACCTCAAAAACACC         <  1:1256210/35‑1
          AAAAAAAAAAGCCACTGGAGCACCTCAAAAACACC         <  1:11154930/35‑1
           AAAACAAAAGCCACTGGAGCACCTCAAAAACACCA        <  1:1608940/35‑1
           AAAAAAAAAGCCACTGGAGCACCTCAAAAACACCA        <  1:18082540/35‑1
           AAAAAAAAAGCCACTGGAGCACCTCAAAAACACCA        <  1:18336505/35‑1
           AAAAAAAAAGCCACTGGAGCACCTCAAAAACACCA        <  1:11299890/35‑1
            AAACAAAAGCCACTGGAGCACCTCAAAAACACCAT       <  1:18822437/35‑1
            AAACAAAAGCCACTGGAGCACCTCAAAAACACCAT       <  1:3797061/35‑1
            AAACAAAAGCCACTGGAGCACCTCAAAAACACCAT       <  1:540611/35‑1
            AAAAAAAAGCCACTGGAGCACCTCAAAAACACCAT       <  1:19220885/35‑1
            AAAAAAAAGCCACTGGAGCACCTCAAAAACACCAT       <  1:19684295/35‑1
            AAAAAAAAGCCACTGGAGCACCTCAAAAACACCAT       <  1:8014877/35‑1
            AAAAAAAAGCCACTGGAGCACCTCAAAAACACCAT       <  1:8282971/35‑1
            AAAAAAAAGCCACTGGAGCACCTCAAAAACACCAT       <  1:14959953/35‑1
             aacAAAAGCCACTGGAGCACCTCAAAAACACCATC      <  1:17659202/32‑1
             aacAAAAGCCACTGGAGCACCTCAAAAACACCATC      <  1:16837927/32‑1
             aacAAAAGCCACTGGAGCACCTCAAAAACACCATC      <  1:13674034/32‑1
             aacAAAAGCCACTGGAGCACCTCAAAAACACCATC      <  1:13502928/32‑1
             AAAAAAAGCCACTGGAGCACCTCAAAAACACCATC      <  1:2842399/35‑1
             AAAAAAAGCCACTGGAGCACCTCAAAAACACCATC      <  1:11465696/35‑1
             AAAAAAAGCCACTGGAGCACCTCAAAAACACCATC      <  1:4821590/35‑1
             AAAAAAAGCCACTGGAGCACCTCAAAAACACCATC      <  1:13115400/35‑1
             AAAAAAAGCCACTGGAGCACCTCAAAAACACCATC      <  1:6346919/35‑1
             AAAAAAAGCCACTGGAGCACCTAAAAAACACCATC      <  1:13819778/35‑1
              ccAAAAGCCACTGGAGCACCTCAAAAACACCATCA     <  1:3954191/33‑1
              acAAAAGCCACTGGAGCACCTCAAAAACACCATCA     <  1:11008358/33‑1
              acAAAAGCCACTGGAGCACCTCAAAAACACCATCA     <  1:8350476/33‑1
              acAAAAGCCACTGGAGCACCTCAAAAACACCATCA     <  1:12090160/33‑1
              AAAAAAGCCACTGGAGCACCTCAAAAACACCATCA     <  1:5873811/35‑1
              AAAAAAGCCACTGGAGCACCTCAAAAACACCATCA     <  1:10785711/35‑1
              AAAAAAGCCACTGGAGCACCTCAAAAACACCATCA     <  1:11690172/35‑1
              AAAAAAGCCACTGGAGCACCTCAAAAACACCATCA     <  1:12238292/35‑1
              AAAAAAGCCACTGGAGCACCTCAAAAACACCATCA     <  1:14661572/35‑1
              AAAAAAGCCACTGGAGCACCTCAAAAACACCATCA     <  1:77752/35‑1
              AAAAAAGCCACTGGAGCAACTCAAAAACACCATCA     <  1:4479527/35‑1
               cAAAAGCCACTGGAGCACCTCAAAAACACCATCAT    <  1:16286557/34‑1
               cAAAAGCCACTGGAGCACCTCAAAAACACCATCAT    <  1:16453717/34‑1
               cAAAAGCCACTGGAGCACCTCAAAAACACCATCAT    <  1:3195686/34‑1
               cAAAAGCCACTGGAGCACCTCAAAAACACCATCAT    <  1:2205836/34‑1
               cAAAAGCCACTGGAGCACCTCAAAAACACCATCAT    <  1:10391366/34‑1
               AAAAAGCCACTGGAGCACCTCAAAAACACCATCAT    <  1:12419747/35‑1
               AAAAAGCCACTGGAGCACCTCAAAAACACCATCAT    <  1:17840449/35‑1
               AAAAAGCCACTGGAGCACCTCAAAAACACCATCAT    <  1:5315888/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACTCCATCATA   <  1:2741656/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACACCATCATA   <  1:846727/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACACCATCATA   <  1:7078606/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACACCATCATA   <  1:9669206/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACACCATCATA   <  1:9825019/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACACCATCATA   <  1:1000720/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACACCATCATA   <  1:4720197/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACACCATCATA   <  1:3527054/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACACCATCATA   <  1:10563647/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACACCATCATA   <  1:233112/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACACCATCATA   <  1:1472194/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACACCATCATA   <  1:18454031/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACACCATCATA   <  1:17319064/35‑1
                AAAAGCCACTGGAGCACCTCAAAAACACCATCATA   <  1:15474024/35‑1
                 AAAGCCACTGGAGCACCTCAAAAACACCATCATAC  <  1:10204609/35‑1
                 AAAGCCACTGGAGCACCTCAAAAACACCATCATAC  <  1:15215638/35‑1
                 AAAGCCACTGGAGCACCTCAAAAACACCATCATAC  <  1:17016344/35‑1
                 AAAGCCACTGGAGCACCTCAAAAACACCATCATAC  <  1:17489449/35‑1
                 AAAGCCACTGGAGCACCTCAAAAACACCATCATAC  <  1:20130871/35‑1
                 AAAGCCACTGGAGCACCTCAAAAACACCATCATAC  <  1:7471326/35‑1
                 AAAGCCACTGGAGCACCTCAAAAACACCATCATAC  <  1:6866814/35‑1
                 AAAGCCACTGGAGCACCTCAAAAACACAATCATAC  <  1:2473832/35‑1
             |||||                                  
ACCAGTTAAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/805864‑805852
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCCACTGGAGCACCTCAAAAACACCATCATAC  <  REL606/1193676‑1193643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.