New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1539621 = | 78 (0.760) | 11 (0.140) | 5/38 | NT | 16.2% | coding (51/2400 nt) | dos | cAMP phosphodiesterase, heme‑regulated |
? | REL606 | 3527786 = | 52 (0.640) | coding (449/1110 nt) | livK | leucine transporter subunit |
GATGCGGAAAATGCCGCCGATGGCATTTTTTTCCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1539659‑1539621 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC > REL606/3527786‑3527819 GATGCGGAAAATGCCGCCGATGGCATTTTTTTCCC > 1:9086103/1‑35 ATGCGGAAAATGCCGCCGATGGCATTTTTTTCCCC > 1:9518052/1‑35 TGCGGAAAATGCCGCCGATGGCATTTTTTTCCCCG > 1:16585281/1‑35 TGCGGAAAATGCCGCCGATGGCATTTTTTTCCCCG > 1:1625101/1‑35 CGGAAAATGCCGCCGATGGCATTTTTTTCCCCGCC > 1:5736683/1‑35 CGGAAAATGCCGCCGATGGCATTTTTTTCCCCGCC > 1:19486393/1‑35 aaaATTTTTTTCCCCGCCGTTGGCCCCTGGGAAGA < 1:9660419/32‑1 aaATTTTTTTCCCCGCCGTTGGCCCCTGGGAAGAG < 1:14027103/33‑1 atTTTTTTTCCCCGCCGTTGGCCCCTGGGAAGAGT < 1:12168449/33‑1 ATTTTTTTCCCCGCCGTTGGCCCCTGGGAAGAGTC < 1:16834771/35‑1 tgTTTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCC < 1:13282931/33‑1 tgTTTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCC < 1:6961789/33‑1 TTTTTTTCCCCGCCGTTGGCCACTGGGAAGAGTCC < 1:5902689/35‑1 ttaTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCCA < 1:17159259/32‑1 gTTTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCCA < 1:13309650/34‑1 TTTTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCCA < 1:15140067/35‑1 TTTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCCAG < 1:2207069/35‑1 aTTTCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGC < 1:5028782/34‑1 TTTCCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGC < 1:2147787/35‑1 ttcCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCC < 1:14228584/32‑1 tttCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCC < 1:7347143/32‑1 tcCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCC < 1:14740056/33‑1 TTCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCC < 1:13678177/35‑1 TTCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCC < 1:65846/35‑1 TTCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCC < 1:15224021/35‑1 gCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCG < 1:7626006/34‑1 TCCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCG < 1:17185309/35‑1 gCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGG < 1:19832829/34‑1 CCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGG < 1:7921637/35‑1 CCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGG < 1:2004507/35‑1 CCCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGG < 1:2585763/35‑1 aCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGC < 1:2440379/34‑1 CCCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGC < 1:14369371/35‑1 CCCGCCGTTGGCCCCGGGGAAGAGTCCAGCCCGGC < 1:8100455/35‑1 CCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCA > 1:13068981/1‑35 CCGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCA < 1:4918719/35‑1 CGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAG > 1:3032162/1‑35 CGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAG > 1:17040026/1‑35 CGCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAG < 1:16554847/35‑1 GCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGT > 1:8733168/1‑35 GCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGT < 1:9775534/35‑1 GCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGT > 1:7419321/1‑35 GCCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGT > 1:18577446/1‑35 CCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTA < 1:16391587/35‑1 CCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTA > 1:13040528/1‑35 CCGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTA > 1:971959/1‑35 CGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC > 1:7481846/1‑35 CGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC < 1:18951218/35‑1 CGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC < 1:9075813/35‑1 CGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC > 1:13673035/1‑35 CGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC > 1:11160578/1‑35 CGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC < 1:10221696/35‑1 CGTTGGCCCCTGGGAAGAGTCCAGACCGGCAGTAC < 1:7530472/35‑1 GATGCGGAAAATGCCGCCGATGGCATTTTTTTCCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1539659‑1539621 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccGTTGGCCCCTGGGAAGAGTCCAGCCCGGCAGTAC > REL606/3527786‑3527819 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |