Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,726,999 | 1 | .→C | 1.9% | 7.0 ‑8.5 ‑0.0 | 215 | coding (151/1515 nt) | ygaA | anaerobic nitric oxide reductase transcription regulator |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Rejected: Prediction has biased read strand distribution supporting polymorphism. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/4): ref base (188/23): total (188/27) | ||||||||||
Fisher's exact test strand distribution p-value = 2.03e-04 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.71e-01 |
Only 100 of 268 total aligned reads displayed.
TCCTTTGCCAGACCGTCGATGGCAAGCGGAATAAA‑CTGCCGCGAATCGTAACGTAGCAACGCAGACGCA > REL606/2726965‑2727033 | tCCTTTGCCAGCCCGTCGATGGCAAGCGGAATaaa < 1:11558911/35‑1 (MQ=255) tCCTTTGCCAGCCCGTCGATGGCAAGCGGAATaaa < 1:14132144/35‑1 (MQ=255) cttttGCCAGACCGTCGATGGCAAGCGGAATAAA‑c < 1:11712315/33‑1 (MQ=255) ccTTTGCCAGACCGTCGATGGCAAGCGGAATAAA‑c > 1:10041563/1‑35 (MQ=255) ccTTTGCCAGACCGTCGATGGCAAGCGGAATAAA‑c > 1:7148114/1‑35 (MQ=255) cTTTGCCAGCCCGTCGATGGCAAGCGGAATAAA‑Ct < 1:3920267/35‑1 (MQ=255) cTTTGCCAGCCCGTCGATGGCAAGCGGAATAAA‑Ct < 1:5773567/35‑1 (MQ=255) cTTTGCCAGACCGTCGATGGCAAGCGGAATAAA‑Ct > 1:1077816/1‑35 (MQ=255) cTTTGCCAGACCGTCGATGGCAAGCGGAATAAA‑Ct > 1:15671159/1‑35 (MQ=255) cTTTGCCAGACCGTCGATGGCAAGCGGAATAAA‑Ct < 1:14480824/35‑1 (MQ=255) tttGCCAGGCCGTCGATGGCAAGCGGAATAAA‑CTg < 1:928550/35‑1 (MQ=255) tttGCCAGACCGTCGATGGCAAGCGGAATAAA‑CTg > 1:9049378/1‑35 (MQ=255) tttGCCAGACCGTCGATGGCAAGCGGAATAAA‑CTg > 1:19229998/1‑35 (MQ=255) tttGCCAGACCGTCGATGGCAAGCGGAATAAA‑CTg < 1:13819416/35‑1 (MQ=255) tttGCCAGACAGTCGATGGCAAGCGGAATAAA‑CTg < 1:14851853/35‑1 (MQ=255) tttCCCGGACCGTCGATGGCAAGCGGAATAAA‑CTg < 1:1306795/35‑1 (MQ=37) tgtGCCAGCCCGTCGATGGCAAGCGGAATAAA‑CTg < 1:16911813/33‑1 (MQ=37) gttGCCAGCCCGTCGATGGCAAGCGGAATAAA‑CTg < 1:1122332/34‑1 (MQ=255) ttGCCAGACCGTCGATGGCAAGCGGAATAAA‑CTGc > 1:5591777/1‑35 (MQ=255) gccccAGACCGTCGATGGCAAGCGGAATAAA‑CTGc < 1:14780985/32‑1 (MQ=255) gCCAGACCGTCGATGGCAAGCGGAATAAA‑CTGCcg > 1:18577520/1‑35 (MQ=255) ccAGATCGTCGATGGCAAGCGGAATAAA‑CTGCcgc > 1:6556635/1‑35 (MQ=255) ccAGACCGTCGATGGCCAGCGGAATAAA‑CTGCcgc > 1:4471251/1‑35 (MQ=255) ccAGACCGTCGATGGCAAGCGGAATAAA‑CTGcccc > 1:3957450/1‑33 (MQ=255) ccAGACCGTCGATGGCAAGCGGAATAAA‑CTGCcgc > 1:20247813/1‑35 (MQ=255) ccAGACCGTCGATGGCAAGCGGAATAAA‑CTGCcgc > 1:5540112/1‑35 (MQ=255) ccAGACCGTCGATGGCAAGCGGAATAAA‑CTGCcgc > 1:14280321/1‑35 (MQ=255) cAGACCGTCGATGGCAAGCGGAATAAA‑CTGCcgcg > 1:7215798/1‑35 (MQ=255) aGACCGTCGATTGCAAGCGGAATAAA‑CTGCCGCGa > 1:7811694/1‑35 (MQ=255) aGACCGTCGATGGCAAGCGGAATAAA‑CTGCCGCGa > 1:3639517/1‑35 (MQ=255) aGACCGTCGATGGCAAGCGGAATAAA‑CTGCCGCGa > 1:16265483/1‑35 (MQ=255) aGACCGTCGATGGCAAGCGGAATAAA‑CTGCCGCGa > 1:17352255/1‑35 (MQ=255) gACCGTCGATGGCAAGCGGAATAAA‑CTGCCGCGaa > 1:1707731/1‑35 (MQ=255) aCCGTCGATGGCAAGCGGAATAAA‑CTGCCGCGAAt > 1:8999199/1‑35 (MQ=255) aCCGTCGATGGCAAGCGGAATAAA‑CTGCCGCGAAt > 1:8335666/1‑35 (MQ=255) aCCGTCGATGGCAAGCGGAATAAA‑CTGCCGCGAAt > 1:2665439/1‑35 (MQ=255) aCCGTCGATGGCAAGCGGAATAAA‑CTGCCGCGAAt > 1:14163540/1‑35 (MQ=255) aCCGTCGATGGCAAGCGGAATAAA‑CTGCCGCGAAt > 1:13197979/1‑35 (MQ=255) ccGTCGATGGCAAGCGGAATAAA‑CTGCCGCGaacc > 1:756468/1‑33 (MQ=255) ccGTCGATGGCAAGCGGAATAAA‑CTGCCGCGAATc > 1:18021350/1‑35 (MQ=255) cGTCGATGGCAAGCGGAATAAA‑CTGCCGCGAATCg > 1:19375553/1‑35 (MQ=255) cGTCGATGGCAAGCGGAATAAA‑CTGCCGCGAATCg > 1:12926417/1‑35 (MQ=255) cGTCGATGGCAAGCGGAATAAA‑CTGCCGCGAATCg > 1:13105113/1‑35 (MQ=255) gTCGATGGCAAGCGTAATAAA‑CTGCCGCGAATCGt > 1:15401877/1‑35 (MQ=255) gTCGATGGCAAGCGGAATAAA‑CTGCCGCGAATCGt > 1:16729276/1‑35 (MQ=255) gTCGATGGCAAGCGGAATAAA‑CTGCCGCGAATCGt > 1:8126249/1‑35 (MQ=255) gTCGATGGCAAGCGGAATAAA‑CTGCCGCGAATCGt > 1:368668/1‑35 (MQ=255) tCGATGGCAAGCGGAATAAA‑CTGCCGCGAATCGTa > 1:8677402/1‑35 (MQ=255) cGATGGCAAGCGGAATAAA‑CTGCCGCGAATCGTaa > 1:4408662/1‑35 (MQ=255) cGATGGCAAGCGGAATAAA‑CTGCCGCGAATCGTaa > 1:6748061/1‑35 (MQ=255) gATGGCAAGCGGAATAAA‑CTGCCGCGAATCGTAAc > 1:4269868/1‑35 (MQ=255) gATGGCAAGCGGAATAAA‑CTGCCGCGAATCGTAAc > 1:5439271/1‑35 (MQ=255) gATGGCAAGCGGAATAAA‑CTGCCGCGAATCGTAAc > 1:17571505/1‑35 (MQ=255) gATGGCAAGCGGAATAAA‑CTGCCGCGAATCGTAAc > 1:20066426/1‑35 (MQ=255) gATGGCAAGCGGAATAAA‑CTGCCGCGAATCGTAAc > 1:1116624/1‑35 (MQ=255) gATGGCAAGCGGAATAAA‑CTGCCGCGAATCGTAAc > 1:19691403/1‑35 (MQ=255) gATGGCAAGCGGAATAAA‑CTGCCGCGAATCGCAAc > 1:89140/1‑35 (MQ=255) aTGGCAAGCGGAATAAA‑CTGCCGCGAATCGTAACg > 1:6325751/1‑35 (MQ=255) aTGGCAAGCGGAATAAA‑CTGCCGCGAATCGTAACg > 1:18824070/1‑35 (MQ=255) tGGCAAGCGGAATAAA‑CTGCCGCGAATCGTAACGt > 1:10552635/1‑35 (MQ=255) tGGCAAGCGGAATAAA‑CTGCCGCGAATCGTAACGt > 1:8241328/1‑35 (MQ=255) tGGCAAGCGGAATAAA‑CTGCCGCGAATCGTAACGt > 1:19935366/1‑35 (MQ=255) tGGCAAGCGGAATAAA‑CTGCCGCAAATCGTAACGt > 1:12628044/1‑35 (MQ=255) ggCAAGCGGAATAAA‑CTGCCGCGAATCGTAACGTa > 1:2150149/1‑35 (MQ=255) ggCAAGCGGAATAAA‑CTGCCGCGAATCGTAACGTa > 1:3814791/1‑35 (MQ=255) cAAGCGGAATAAA‑CTGCCGCGAATCGTAACGTAGc > 1:4894318/1‑35 (MQ=255) cAAGCGGAATAAA‑CTGCCGCGAATCGTAACGTAGc > 1:2887409/1‑35 (MQ=255) cAAGCGAAATAAC‑CTGCCGCGAATCGTAACGTAGc < 1:20150834/35‑1 (MQ=37) aaGCGGAATAAA‑CTGCCGCGAATCGTAACGTAGCa > 1:11401636/1‑35 (MQ=255) aaGCGGAATAAA‑CTGCCGCGAATCGTAACGTAGCa > 1:599905/1‑35 (MQ=255) aaGCGGAATAAA‑CTGCCGCGAATCGTAACGTAGCa > 1:9518799/1‑35 (MQ=255) aaGCGGAATAAA‑CTGCCGCGAATCGTAACGCAGCa > 1:20605601/1‑35 (MQ=255) ggCGAAAAAAC‑CTGCCGCGAATCGTAACGTAGCaa < 1:6880808/34‑1 (MQ=25) aGCGGAATAAA‑CTGCCGCGAATCGTAACGTAGCaa > 1:240240/1‑35 (MQ=255) gCGGAATAAA‑CTGCCGCGAATCGTAACGTAGCAAc > 1:2575551/1‑35 (MQ=255) gCGGAATAAA‑CTGCCGCGAATCGTAACGTAGCAAc > 1:2789434/1‑35 (MQ=255) gCGGAATAAA‑CTGCCGCGAATCGTAACGTAGCAAc > 1:3502757/1‑35 (MQ=255) gCGGAATAAA‑CTGCCGCGAATCGTAACGTAGCAAc > 1:13434028/1‑35 (MQ=255) gCGGAATAAA‑CTGCCGCGAATCGTAACGTAGCAAc > 1:16226569/1‑35 (MQ=255) gggAATCCA‑CTGCCGCGAATCGTAACGTAGCAACg < 1:12893120/34‑1 (MQ=37) cGGAATAAA‑CTGCCGCGAATCGTAACGTAGCAACg > 1:1530242/1‑35 (MQ=255) cGGAATAAA‑CTGCCGCGAATCGTAACGTAGCAACg > 1:16859658/1‑35 (MQ=255) ggAATAAA‑CTGCCGCGAATCGTAACGTAGCAACGc > 1:18148460/1‑35 (MQ=255) ggAATAAA‑CTGCCGCGAATCGTAACGTAGCAACGc > 1:11000683/1‑35 (MQ=255) ggAAAAAACCTGCCGCGAATCGTAACGTAGCAACg < 1:3017536/35‑1 (MQ=25) gAATAAA‑CTGCCGCGAATCGTAACGTAGCAACGCa > 1:6271301/1‑35 (MQ=255) gAATAAA‑CTGCCGCGAATCGTAACGTAGCAACGCa > 1:16065127/1‑35 (MQ=255) gAATAAA‑CTGCCGCGAATCGTAACGTAGCAACGCa > 1:6980780/1‑35 (MQ=255) gAATAAA‑CTGCCGCGAATCGTAACGTAGCAACGCa > 1:13382827/1‑35 (MQ=255) gAATAAA‑CTGCCGCGAATCGTAACGTAGCAACGCa > 1:8851867/1‑35 (MQ=255) aaTAAA‑CTGCCGCGAATCGTAACGTAGCAACGCAg > 1:10103713/1‑35 (MQ=255) aTAAA‑CTGCCGCGAATCGTAACGTAGCAACGCAGa > 1:7668983/1‑35 (MQ=255) tAAC‑CTGCCGCGAATCGTAACGTAGCAACGCAGAc < 1:18331639/35‑1 (MQ=255) tAAA‑CTGCCGCGAATCGTAACGTAGCAACGCAGAc > 1:17677633/1‑35 (MQ=255) aaa‑CTGCCGCGAATCGTAACGTAGCAACGCAGACg > 1:13636676/1‑35 (MQ=255) aaa‑CTGCCGCGAATCGTAACGTAGCAACGCAGACg > 1:436968/1‑35 (MQ=255) aa‑CTGCCGCGAATCGTAACGTAGCAACGCAGACGc > 1:4813915/1‑35 (MQ=255) aa‑CTGCCGCGAATCGTAACGTAGCAACGCAGACGc > 1:10843835/1‑35 (MQ=255) aa‑CTGCCGCGAATCGTAACGTAGCAACGCAGACGc > 1:5126562/1‑35 (MQ=255) aa‑CTGCCGCGAATCGTAACGTAGCAACGCAGACGc > 1:19880962/1‑35 (MQ=255) | TCCTTTGCCAGACCGTCGATGGCAAGCGGAATAAA‑CTGCCGCGAATCGTAACGTAGCAACGCAGACGCA > REL606/2726965‑2727033 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |