New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3630716 | NA (NA) | 79 (0.770) | 38/48 | NT | NA | intergenic (‑171/‑305) | ldrD/yhjV | toxic polypeptide, small/predicted transporter |
? | REL606 | = 3652533 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region |
Only 100 of 159 total aligned reads displayed.
GGGATAAAGCCCCCGCAACATTGCGCCTCACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3630683‑3630716 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACAC < REL606/3652533‑3652500 GGGATAAAGCCCCCGCAACATTGCGCCTCACCGGT > 1:17522556/1‑35 GGATAAAGCCCCCGCAACATTGCGCCTCACCGGTG < 1:18823503/35‑1 GGATAAAGCCCCCGCAACATTGCGCCTCACCGGTG < 1:12020950/35‑1 GGATAAAGCCCCCGCAACATTGCGCCTCACCGGTG > 1:7903995/1‑35 GGATAAAGCCCCCGCAACATTGCGCCTCACCGGTG < 1:18221229/35‑1 GATAAAGCCCCCGCAACATTGCGCCTCACCGGTGT < 1:17546343/35‑1 ATAAAGCCCCCTCAACATTGCGCCTCACCGGTGTA > 1:15338651/1‑35 ATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTA > 1:8970165/1‑35 TAAAGCCCCCGCAACATTGCGCCTCACCGGTGTAC < 1:14714327/35‑1 TAAAGCCCCCGCAACATTGCGCCTCACCGGTGTAC > 1:14888027/1‑35 TAAAGCCCCCGCAACATTGCGCCTCACCGGTGTAC < 1:9305171/35‑1 AAAGCCCCCGCAACATTGCGCCTCACCGGTGTACT > 1:20574493/1‑35 AAGCCCCCGCAACATTGCGCCTCACCGGTGTACTG < 1:197613/35‑1 AGCCCCCGCAACATTGCGCCTCACCGGTGTACTGA > 1:11036316/1‑35 AGCCCCCGCAACATTGCGCCTCACCGGTGTACTGA > 1:9451475/1‑35 AGCCCCCGCAACATTGCGCCTCACCGGTGTACTGA < 1:2048212/35‑1 CCCCCGCAACATTGCGCCTCACCGGTGTACTGACC > 1:8050591/1‑35 CCCCCGCAACATTGCGCCTCACCGGTGTACTGACC < 1:7669899/35‑1 CCCCGCAACATTGCGCCTCACCGGTGTACTGACCC < 1:18120896/35‑1 CCCGCAACATTGCGCCTCACCGGTGTACTGACCCC < 1:18862912/35‑1 CCGCAACATTGCGGCTCACCGGTGTACTGACCCCA < 1:1417093/35‑1 CCGCAACATTGCGCCTCACCGGTGTACTGACCCCA < 1:11160538/35‑1 CCGCAACATTGCGCCTCACCGGTGTACTGACCCCA > 1:10456531/1‑35 CCGCAACATTGCGCCTCACCGGTGTACTGACCCCA < 1:336892/35‑1 CGCAACATTGCGCCTCACCGGTGTACTGACCCCAA > 1:3153100/1‑35 CGCAACATTGCGCCTCACCGGTGTACTGACCCCAA < 1:13773721/35‑1 CGCAACATTGCGCCTCACCGGTGTACTGACCCCAA > 1:12361000/1‑35 GCAACATTGCGCCTCACCGGTGTACTGACCCCAAA > 1:11030316/1‑35 GCAACATTGCGCCTCACCGGTGTACTGACCCCAAA < 1:9520582/35‑1 CAACATTGCGCCTCACCGGTGTACTGACCCCAAAA < 1:15163159/35‑1 CAACATTGCGCCTCACCGGTGTACTGACCCCAAAA > 1:13540168/1‑35 AACATTGCGCCTCACCGGTGTACTGACCCCAAAca > 1:5957026/1‑33 AACATTGCGCCTCACCGGTGTACTGACCCCAAAAA > 1:6456120/1‑35 AACATTGCGCCTCACCGGTGTACTGACCCCAAAAA < 1:1066042/35‑1 ACATTGCGCCTCACCGGTGTACTGACCCCAAAAAG > 1:7695488/1‑35 CATTGCGCCTCACCGGTGTACTGACCCCAAAAAGT > 1:20600752/1‑35 CATTGCGCCTCACCGGTGTACTGACCCCAAAAAGT > 1:12425874/1‑35 CATTGCGCCTCACCGGTGTACTGACCCCAAAAAGT > 1:10616795/1‑35 ATTGCGCCTCACCGGTGTACTGACCCCGAAAAGTT > 1:3481277/1‑35 TTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTG > 1:3682977/1‑35 TTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTG > 1:19235120/1‑35 TGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGG > 1:10289396/1‑35 TGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGG < 1:3940048/35‑1 GCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGA < 1:17063497/35‑1 GCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGA < 1:7194591/35‑1 GCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGA < 1:4346843/35‑1 CGCCTCACCGGTGTACTGACCCCAAAAAGTTGGAC > 1:19062275/1‑35 CGCCTCACCGGTGTACTGACCCCAAAAAGTTGGAC < 1:15956352/35‑1 CGCCTCACCGGTGTACTGACCCCAAAAAGTTGGAC > 1:14469719/1‑35 CGCCTCACCGGTGTACTGACCCCAAAAAGTTGGAC < 1:3173479/35‑1 GCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA < 1:854119/35‑1 GCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA > 1:13181259/1‑35 GCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA > 1:6262417/1‑35 GCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA > 1:30704/1‑35 GCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA < 1:2199327/35‑1 CCTCACCGGTGTACTGACCCCAAAAAGTTGGACAG > 1:17197938/1‑35 CCTCACCGGTGTACTGACCCCAAAAAGTTGGACAG > 1:10404542/1‑35 CCTCACCGGTGTACTGACCCCAAAAAGTTGGACAG < 1:13076825/35‑1 CTCACCGGTGTACTGACCCCAAAAAGTTGGACAGT < 1:4438446/35‑1 TCACCGGTGTACTGACCCCAAAAAGTTGGACAGTT > 1:18170151/1‑35 TCACCGGTGTACTGACCCCAAAAAGTTGGACAGTT < 1:9412863/35‑1 CACCGGTGTACTGACCCCAAAAAGTTGGACAGTTA > 1:18727517/1‑35 ACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAA > 1:2275036/1‑35 ACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAA > 1:19087090/1‑35 tttGTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:1071489/32‑1 gttGTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:8664096/32‑1 gttGTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:20248141/32‑1 gttGTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:13468045/4‑35 catGTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:2052078/4‑35 catGTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:8083656/4‑35 catGTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:6629350/4‑35 caGGTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:1657914/33‑1 agcGTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:11286782/32‑1 agcGTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:15652113/4‑35 agcGTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:10312453/32‑1 CCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:3993785/35‑1 ttGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:20185620/33‑1 ttGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:2551249/33‑1 gcGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:6176090/33‑1 gcGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC > 1:13924508/3‑35 ctGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:6072824/33‑1 CGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:3044138/35‑1 tGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:14232089/34‑1 tGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:6621723/34‑1 tGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:15758566/34‑1 tGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:15360695/34‑1 cGTGTACTGACCGCAAAAAGTTGGACAGTTAAACA < 1:5138524/34‑1 cGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:3998838/2‑35 cGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:13672352/34‑1 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:18385306/1‑35 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:7417658/35‑1 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:6550470/35‑1 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:15908107/1‑35 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC < 1:11733214/35‑1 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:16988413/1‑35 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:19322932/1‑35 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:8863126/1‑35 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:6873165/1‑35 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC < 1:1942469/35‑1 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:14527347/1‑35 GGGATAAAGCCCCCGCAACATTGCGCCTCACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3630683‑3630716 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACAC < REL606/3652533‑3652500 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |