New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 65726081 (0.790)7 (0.090) 5/38 NT 8.3% coding (108/2583 nt) leuS leucyl‑tRNA synthetase
?REL606 = 1387545 90 (1.110)coding (247/966 nt) ycjG L‑Ala‑D/L‑Glu epimerase

Only 100 of 175 total aligned reads displayed.

GTCGACCAGAAGGATAGGGAAGCATAGACAGGCAGTAATACTTCTCTTTGCTCTCGTCTTCGGTTACTT  >  REL606/657226‑657294
                                  |                                  
gTCGACCAGAAGGATAGGGAAGCATAGACAGGCAG                                    >  1:2088992‑M1/1‑35 (MQ=255)
gTCGACCAGAAGGATAGGGAAGCATAGACAGGCAG                                    <  1:3199242‑M1/35‑1 (MQ=255)
gTCGACCAGAAGGATAGGGAAGCATAGACAGGCAG                                    <  1:14025359‑M1/35‑1 (MQ=255)
 tCGACCAGAAGGATAGGGAAGCATAGACAGGCAGg                                   >  1:6238941‑M1/1‑34 (MQ=255)
 tCGACCAGAAGGATAGGGAAGCATAGACAGGCAGg                                   >  1:11359118‑M1/1‑34 (MQ=255)
 tCGAACAGAAGGATAGGGAAGCATAGACAGGCAGt                                   <  1:5220714/35‑1 (MQ=255)
  cGACCAGAAGGATAGGGAAGCATAGACAGGCAGTa                                  <  1:3772667/35‑1 (MQ=255)
   gACCAGAAGGATAGGGAAGCATAGACAGGCAGgga                                 >  1:9210258‑M1/1‑32 (MQ=255)
   gACCAGAAGGATAGGGAAGCATAGACAGGCAGgga                                 >  1:20049549‑M1/1‑32 (MQ=255)
   gACCAGAAGGATAGGGAAGCATAGACAGGCAGTaa                                 <  1:8171789/35‑1 (MQ=255)
    aCCAGAAGGATAGGGAAGCATAGACAGGCAGggat                                >  1:12121039‑M1/1‑31 (MQ=255)
    aCCAGAAGGATAGGGAAGCATAGACAGGCAGTAAt                                <  1:255564/35‑1 (MQ=255)
    aCCAGAAGGATAGGGAAGCATAGACAGGCAGTAAt                                <  1:9484359/35‑1 (MQ=255)
     ccAGAAGGATAGGGAAGCATAGACAGGCAGggggg                               >  1:3095037‑M1/1‑30 (MQ=255)
     ccAGAAGGATAGGGAAGCATAGACAGGCAGggaga                               >  1:9671164‑M1/1‑30 (MQ=255)
     ccAGAAGGATAGGGAAGCATAGACAGGCAGggaga                               >  1:16067298‑M1/1‑30 (MQ=255)
     ccAGAAGGATAGGGAAGCATAGACAGGCAGTAATa                               <  1:18015803/35‑1 (MQ=255)
     ccAGAAGGATAGGGAAGCATAGACAGGCAGTAATa                               <  1:13461815/35‑1 (MQ=255)
      cAGAAGGATAGGGAAGCATAGACAGGCAGggatac                              >  1:5394807‑M1/1‑29 (MQ=255)
      cAGAAGGATAGGGAAGCATAGACAGGCAGggaaaa                              >  1:2830553‑M1/1‑29 (MQ=255)
      cAGAAGGATAGGGAAGCATAGACAGGCAGTAATAc                              <  1:15689676/35‑1 (MQ=255)
      cAGAAGGATAGGGAAGCATAGACAGGCAGTAATAc                              <  1:3038474/35‑1 (MQ=255)
       aGAAGGATAGGGAAGCATAGACAGGCAGggagata                             >  1:17711492‑M1/1‑28 (MQ=255)
       aGAAGGATAGGGAAGCATAGACAGGCAGTAATACt                             <  1:11860246/35‑1 (MQ=255)
       aGAAGGATAGGGAAGCATAGACAGGCAGTAATACt                             >  1:20228769/1‑35 (MQ=255)
         aaGGATGGGGAAGCATAGACAGGCAGTAATACTtc                           <  1:14578897/35‑1 (MQ=255)
         aaGGATAGGGAAGCATAGACAGGCAGTAATACTtc                           <  1:11412997/35‑1 (MQ=255)
          aGGATAGGGAAGCATAGACAGGCAGTAATACTtct                          <  1:6521148/35‑1 (MQ=255)
           ggATAGGGAAGCATAGACAGGCAGggagaattttt                         >  1:15862310‑M1/1‑24 (MQ=255)
           ggATAGGGAAGCATAGACAGGCAGTAATACTtctt                         <  1:3479756/35‑2 (MQ=255)
           ggATAGGGAAGCATAGACAGGCAGTAATACTtctc                         <  1:2246827/35‑1 (MQ=255)
           ggATAGGGAAGCATAGACAGGCAGGGGTACTtctc                         >  1:19823839/1‑35 (MQ=255)
            gATAGGGAAGCATAGACAGGCAGTAATACTTctct                        <  1:12897207/35‑1 (MQ=255)
            gATAGGGAAGCATAGACAGGCAGGGATAATTctct                        >  1:5643794/1‑35 (MQ=25)
            gATAGGGAAGCATAGACAGGCAGGGAGAATTctct                        >  1:13097433/1‑35 (MQ=19)
             aTAGGGAAGCATAGACAGGCAGTAATGCTTCTCtt                       <  1:18256278/35‑1 (MQ=255)
              tAGGGAAGCATAGACAGGCAGTAATACTTCTCttt                      <  1:19253654/35‑1 (MQ=255)
              tAGGGAAGCATAGACAGGCAGTAATACTTCTCttt                      <  1:20365886/35‑1 (MQ=255)
              tAGGGAAGCATAGACAGGCAGTAATACTTCTCttt                      <  1:9313795/35‑1 (MQ=255)
               aGGGAAGCATAGACAGGCAGTAATACTTCTCTTTg                     <  1:2576196/35‑1 (MQ=255)
                gggAAGCATAGACAGGCAGTAATACTTCTCTTTGc                    <  1:1862496/35‑1 (MQ=255)
                 ggAAGCATAGACAGGCAGTAATACTTCTCTTTGct                   <  1:5943873/35‑1 (MQ=255)
                 ggAAGCATAGACAGGCAGTAATACTTCTCTTTGct                   <  1:12597032/35‑1 (MQ=255)
                 ggAAGCATAGACAGGCAGTAATACTTCTCTTTGct                   <  1:10693187/35‑1 (MQ=255)
                  gAAGCATAGACAGGCAGTAATACTTCTCTTTGctc                  <  1:413396/35‑1 (MQ=255)
                  gAAGCATAGACAGGCAGTAATACTTCTCTTTGctc                  <  1:11272966/35‑1 (MQ=255)
                  gAAGCATAGACAGGCAGTAATACTTCTCTTTGctc                  <  1:9704909/35‑1 (MQ=255)
                    aGCATATACAGGCAGTAATACTTCTCTTTGCtctc                <  1:1878186/35‑1 (MQ=255)
                    aGCATAGACAGGCAGTAATACTTCTCTTTGCtctc                <  1:16555683/35‑1 (MQ=255)
                    aGCATAGACAGGCAGTAATACTTCTCTTTGCtctc                <  1:8225885/35‑1 (MQ=255)
                    aGCATAGACAGGCAGTAATACTTCTCTTTGCtctc                <  1:7976180/35‑1 (MQ=255)
                     gCATAGACAGGCAGTAATACTTCTCTTTGCTCTCg               <  1:6388496/35‑1 (MQ=255)
                     gCATAGACAGGCAGTAATACTTCTCTTTGCTCTCg               <  1:20470289/35‑1 (MQ=255)
                     gCATAGACAGGCAGTAATACTTATCTTTGCTCTCg               <  1:10443108/35‑1 (MQ=255)
                      cATAGACAGGCAGTAATACTTCTCTTTGCTCTCGt              <  1:5214222/35‑1 (MQ=255)
                       aTAGACAGGCAGTAATACTTCTCTTTGCTCTCGTc             <  1:12402364/35‑1 (MQ=255)
                       aTAGACAGGCAGTAATACTTCTCTTTGCTCTCGTc             <  1:12364861/35‑1 (MQ=255)
                        tAGACAGGCAGTAATACTTCTCTTTGCTCTCGTCt            <  1:1466285/35‑1 (MQ=255)
                        tAGACAGGCAGTAATACTTCTCTTTGCTCTCGTCt            <  1:14220919/35‑1 (MQ=255)
                         aGACAGTCAGTAATACTTCTCTTTGCTCTCGTCtt           >  1:4422516/1‑35 (MQ=255)
                         aGACAGGCAGTAATACTTCTCTTTGCTCTCGTCtt           <  1:11994584/35‑1 (MQ=255)
                         aGACAGGCAGTAATACTTCTCTTTGCTCTCGTCtt           <  1:16931298/35‑1 (MQ=255)
                          gACAGGCAGTAATACTTCTCTTTGCTCTCGTCTTc          <  1:19735232/35‑1 (MQ=255)
                          gACAGGCAGTAATACTTCTCTTTGCTCTCGTCTTc          <  1:8418443/35‑1 (MQ=255)
                          gACAGGCAGTAATACTTCTCTTTGCTCTCGTCTTc          <  1:18852747/35‑1 (MQ=255)
                          gACAGGCAGTAATACTTCTCTTTGCTCTCGTCTTc          <  1:10989215/35‑1 (MQ=255)
                           aCAGGCAGTAATACTTCTCTTTGCTCTCGTCTTCg         <  1:7730213/35‑1 (MQ=255)
                           aCAGGCAGTAATACTTCTCTTTGCTCTCGTCTTCg         <  1:7561997/35‑1 (MQ=255)
                           aCAGGCAGTAATACTTCTCTTTGCTCTCGTCTTCg         <  1:72201/35‑1 (MQ=255)
                           aCAGGCAGTAATACTTCTCTTTGCTCTCGTCTTCg         <  1:9837525/35‑1 (MQ=255)
                            cAGGCAGTAATACTTCTCTTTGCTCTCGTCTTCgg        <  1:14694599/35‑1 (MQ=255)
                             aGGCAGTAATACTTCTCTTTGCTCTCGTCTTCGGt       <  1:18295511/35‑1 (MQ=255)
                             aGGCAGTAATACTTCTCTTTGCTCTCGTCTTCGGt       >  1:1753370/1‑35 (MQ=255)
                              ggcagggagaattttttgcaactcctcccgtgtca      >  1:12315962‑M1/1‑5 (MQ=255)
                              ggcagggagaattttttgcaactcctcccgtgtca      >  1:7656110‑M1/1‑5 (MQ=255)
                              ggCAGTAATACTTCTCTTTGCTCTCGTCTTCGGtt      >  1:4780040/1‑35 (MQ=255)
                              ggCAGTAATACTTCTCTTTGCTCTCGTCTTCGGtt      >  1:1474445/1‑35 (MQ=255)
                               gcagggagaattttttgcaactcctcccgtgtcag     >  1:3650383‑M1/1‑4 (MQ=255)
                               gcagggagaattttttgcaactcctcccgtgtcag     <  1:15005318‑M1/35‑32 (MQ=255)
                               gcagggagaattttttgcaactcctcccgtgtcaa     >  1:16571801‑M1/1‑4 (MQ=255)
                               gcagggagaattttttgcaactactcccgtgtcag     <  1:6660800‑M1/35‑32 (MQ=255)
                               gCAGTAATACTTCTCTTTGCTCTCGTCTTCGGTTa     >  1:15922032/1‑35 (MQ=255)
                               gCAGTAATACTTCTCTTTGCTCTCGTCTTCGGTTa     >  1:5843263/1‑35 (MQ=255)
                               gCAGTAATACTTCTCTTTGCTCTCGTCTTCGGTTa     <  1:9033697/35‑1 (MQ=255)
                               gCAGTAATACTTCTATTTGCTCTCGTCTTCGGTTa     <  1:17464146/35‑1 (MQ=255)
                               gCAGTAATACTTATCTTTGCTCTCGTCTTCGGTTa     <  1:9210843/35‑1 (MQ=255)
                                cAGTAATACTTCTCTTTGCTCTCGTCTTTGGTTAc    <  1:16437596/35‑1 (MQ=255)
                                cAGTAATACTTCTCTTTGCTCTCGTCTTCGGTTAc    >  1:12069490/1‑35 (MQ=255)
                                cAGTAATACTTCTCTTTGCTCTCGTCTTCGGTTAc    <  1:16788087/35‑1 (MQ=255)
                                cAGTAATACTTCTCTTTGCTCTCGTCTTCGGTTAc    >  1:13685423/1‑35 (MQ=255)
                                cAGTAATACTTCTCTTTGCTCTCGTCTTCGGTTAc    <  1:18931313/35‑1 (MQ=255)
                                 agggggaattttttgcaactcctcccgtgtcagcc   <  1:1171998‑M1/35‑34 (MQ=255)
                                 agggagaattttttgcaactcctcccgtgtcagcc   >  1:15154243‑M1/1‑2 (MQ=255)
                                 agggagaattttttgcaactcctcccgtgtcagcc   >  1:15269112‑M1/1‑2 (MQ=255)
                                 aGTAATACTTCTCTTTGCTCTCGTCTTCGGTTACt   >  1:1310580/1‑35 (MQ=255)
                                  gggagaattttttgcaactcctcccgtgtcagccc  <  1:15175959‑M1/35‑35 (MQ=255)
                                  gggagaattttttgcaactcctcccgtgtcagccc  <  1:9355773‑M1/35‑35 (MQ=255)
                                  gggagaattttttgcaactcctcccgtgtcagccc  <  1:15583574‑M1/35‑35 (MQ=255)
                                  gTAATACTTCTCTTTGCTCTCGTCTTCGGTTACtt  >  1:8692906/1‑35 (MQ=255)
                                  gTAATACTTCTCTTTGCTCTCGTCTTCGGTTACtt  >  1:18386965/1‑35 (MQ=255)
                                  |                                  
GTCGACCAGAAGGATAGGGAAGCATAGACAGGCAGTAATACTTCTCTTTGCTCTCGTCTTCGGTTACTT  >  REL606/657226‑657294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.