New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3579044 = | 7 (0.070) | 29 (0.320) | 6/42 | NT | 37.4% | intergenic (+703/‑174) | gor/arsR | glutathione reductase/DNA‑binding transcriptional repressor |
? | REL606 | 3912266 = | 91 (1.010) | intergenic (+46/‑94) | ilvL/ilvG | ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit |
CAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCA > REL606/3579010‑3579078 | tcctcggttatgtttttaaggtcaaaaaaaacccc < 1:15913581‑M1/1‑1 (MQ=255) tcctcggttatgtttttaaggtcaaaaaaaacccc < 1:5179373‑M1/1‑1 (MQ=255) cctcggttatgtttttaaggtcaaaaaaaagcccc > 1:13115441‑M1/34‑35 (MQ=255) cctcggttatgtttttaaggtcaaaaaaaaccccc > 1:13181208‑M1/34‑35 (MQ=255) ctcggttatgtttttaaggtcaaaaaaaacccCCg > 1:3465158‑M1/33‑35 (MQ=255) ctcggttatgtttttaaggtcaaaaaaaacccCCg < 1:7688306‑M1/3‑1 (MQ=255) gaaaaaaaaaacccCCGACGCAAAGTCGGtttttt > 1:10458309‑M1/15‑35 (MQ=255) aaaaaaaaacccCCGACGCAAAGTCGGTTTTTTTa > 1:2517252‑M1/13‑35 (MQ=255) aaaaaaaaacccCCGACGCAAAGTCGGTTTTTTTa > 1:1403928‑M1/13‑35 (MQ=255) aaaaaaaaaaccCCGACGCAAAGTCGGTTTTTTTa > 1:1295048‑M1/13‑35 (MQ=255) aaaaaaaaaaccCCGACGCAAAGTCGGTTTTTTTa > 1:20434416‑M1/13‑35 (MQ=255) aaaaaaaaaaccCCGACGCAAAGTCGGTTTTTTTa > 1:13735473‑M1/13‑35 (MQ=255) aaaaaaaccccCCGACGCAAAGTCGGTTTTTTTAc > 1:6647285‑M1/12‑35 (MQ=255) aaaaaaaacccCCGACGCAAAGTCGGTTTTTTTAc > 1:2636996‑M1/12‑35 (MQ=255) aaaaaaaacccCCGACGCAAAGTCGGTTTTTTTAc > 1:4203940‑M1/12‑35 (MQ=255) aaaaaaaaaccCCGACGCAAAGTCGGTTTTTTTAc > 1:5777297‑M1/12‑35 (MQ=255) aaaaaaacccCCGACGCAAAGTCGGTTTTTTTaca > 1:18016948‑M1/11‑34 (MQ=255) aaaaaaacccCCGACGCAAAGTCGGTTTTTTTACg > 1:4512638‑M1/11‑35 (MQ=255) aaaaaaaaccCCGACGCAAAGTCGGTTTTTTTaca > 1:17608776‑M1/11‑34 (MQ=255) aaaaaaaaccCCGACGCAAAGTCGGTTTTTTTaca > 1:10548250‑M1/11‑34 (MQ=255) aaaaaaaaccCCGACGCAAAGTCGGTTTTTTTaca > 1:5616394‑M1/11‑34 (MQ=255) aaGTAAAAAACCGACGCAAAGTCGGGTTTTTTACg > 1:3102453/1‑35 (MQ=12) aaGTAAAAAACCGACGCAAAGTCGGGTTTTTTACg > 1:3607322/1‑35 (MQ=12) aagaaacccCCGACGCAAAGTCGGTTTTTTTACGt > 1:20364417‑M1/10‑35 (MQ=255) aaaaaacccCCGACGCAAAGTCGGTTTTTTtacat > 1:14543029‑M1/10‑33 (MQ=255) aaaaaaaccCCGACGCAAAGTCGGTTTTTTTACGt > 1:3779109‑M1/10‑35 (MQ=255) aaaaaaaccCCGACGCAAAGTCGGTTTTTTTACGt > 1:17132352‑M1/10‑35 (MQ=255) aaaaaaaccCCGACGCAAAGTCGGTTTTTTTACGt > 1:19103346‑M1/10‑35 (MQ=255) aGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGt > 1:19721016/1‑35 (MQ=35) aGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGt > 1:9668752/1‑35 (MQ=35) gTAAAAAACCGACGCAAAGTCGGTTTTTTTAAGTc > 1:11060082/1‑35 (MQ=12) aaaaacccCCGACGCAAAGTCGGTTTTTttacatc > 1:16029394‑M1/9‑32 (MQ=255) aaaaacccCCGACGCAAAGTCGGTTTTTttacatc > 1:13668181‑M1/9‑32 (MQ=255) aaaaacccCCGACGCAAAGTCGGTTTTTTTACGTc > 1:3349282‑M1/9‑35 (MQ=255) aaaaacccCCGACGCAAAGTCGGTTTTTTTACGTc > 1:6332442‑M1/9‑35 (MQ=255) aaaaaaccCCGACGCAAAGTCGGTTTTTTTACGTc > 1:4465072‑M1/9‑35 (MQ=255) aaaaaaccCCGACGCAAAGTCGGTTTTTTTACGTc > 1:12803477‑M1/9‑35 (MQ=255) tAAAAAACCGACGCAAAGTCGGTTTTTTTACGTcc > 1:17758031/1‑35 (MQ=38) aaaacccCCGACGCAAAGTCGGTTTTTTTACGTcc > 1:7874944‑M1/8‑35 (MQ=255) aaaacccCCGACGCAAAGTCGGTTTTTTTACGTcc > 1:2228251‑M1/8‑35 (MQ=255) aaacccCCGACGCAAAGTCGGTTTTTTTACGTCCt > 1:13297866‑M1/7‑35 (MQ=255) aaaaaaCCGACGCAAAGTCGGTTTTTTTACGTCCt > 1:11609641/1‑35 (MQ=40) aacccCCGACGCAAAGTCGGTTTTTTTACGTCCTg > 1:10228574‑M1/6‑35 (MQ=255) aacccCCGACGCAAAGTCGGTTTTTTTACGTCCTg > 1:10391893‑M1/6‑35 (MQ=255) aacccCCGACGCAAAGTCGGTTTTTTTACGTCCTg > 1:22503‑M1/6‑35 (MQ=255) aaaaaCCGACGCAAAGTCGGTTTTTTTACGTCCTg > 1:955790/1‑35 (MQ=255) aaaaaCCGACGCAAAGTCGGTTTTTTTACGTCCTg > 1:15630214/1‑35 (MQ=255) aaaaCCGACGCAAAGTCGGGTTTTTTACGTCCTGa > 1:12263939/1‑35 (MQ=255) aaaaCCGACGCAAAGTCCGTTTTTTTACGTCCTGa > 1:7513972/1‑35 (MQ=255) aaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGAt > 1:17817550/1‑35 (MQ=255) aaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGAt > 1:1766054/1‑35 (MQ=255) ccCCGACGCAAAGTCGGTTTTTTTACGTCCTGAtt > 1:11958133‑M1/3‑35 (MQ=255) ccCCGACGCAAAGTCGGTTTTTTTACGTCCTGAtt > 1:12905958‑M1/3‑35 (MQ=255) ccCCGACGCAAAGTCGGTTTTTTTACGTCCTGAtt > 1:17621216‑M1/3‑35 (MQ=255) ccCCGACGCAAAGTCGGTTTTTTTACGTCCTGAtt > 1:17803365‑M1/3‑35 (MQ=255) aaCCGACTCAAAGTCGGGTTTTTTACGTCCTGAtt > 1:20141710/1‑35 (MQ=17) cCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTc > 1:5650407‑M1/2‑35 (MQ=255) cCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTc > 1:18850935‑M1/2‑35 (MQ=255) cCCGACGCAAAGTCGGTTTTTTTACGCCCTGATTc > 1:18917529‑M1/2‑35 (MQ=255) aCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTc > 1:9198566/1‑35 (MQ=255) aCCGACGCAAAGTCGGGTTTTTTACGTCCTGATTc > 1:16881074/1‑35 (MQ=255) aCCGACGCAAAGTCGGGTTTTTTACGTCCTGATTc > 1:588378/1‑35 (MQ=255) CCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCa > 1:13851874‑M1/1‑35 (MQ=255) CCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCa > 1:618078‑M1/1‑35 (MQ=255) CCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCa > 1:11365532‑M1/1‑35 (MQ=255) CCGACGCAAAGTCGGGTTTTTTACGTCCTGATTCa < 1:19252102‑M1/35‑1 (MQ=255) | CAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCA > REL606/3579010‑3579078 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |