New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3281469 =113 (1.100)21 (0.220) 7/44 NT 18.2% coding (62/288 nt) yhbH predicted ribosome‑associated, sigma 54 modulation protein
?REL606 = 4043982 85 (0.900)coding (42/1404 nt) yihO predited transporter

Only 100 of 222 total aligned reads displayed.

GTCGAGATCACCGAGGCACTGCGCGAATTTGTTACAGCCAAATTTGCCAAACTTGAGCAATATTTTGAC  >  REL606/3281435‑3281503
                                  |                                  
gTCGAGATCACCGAGGCACTGCGCGAATTTGTTAc                                    >  1:20430404/1‑35 (MQ=255)
gTCGAGATCACCGAGGCACTGCGCGAATTTGTTAc                                    >  1:8535572/1‑35 (MQ=255)
gTCGAGATCACCGAGGCACTGCGCGAATTTGTTAc                                    >  1:786997/1‑35 (MQ=255)
gTCGAGATCACAGAGGCACTGCGCGAATTTGTTAc                                    <  1:15027593/35‑1 (MQ=255)
accaacgtcgcccataccataggcgattttttccc                                    <  1:2003310‑M1/1‑1 (MQ=255)
accaacgtcgcccataccataggcgattttttccc                                    <  1:2438209‑M1/1‑1 (MQ=255)
accaacgtcgcccataccataggcgattttttccc                                    >  1:7158098‑M1/35‑35 (MQ=255)
accaacgtcgcccataacataggcgattttttccc                                    >  1:429827‑M1/35‑35 (MQ=255)
 tCGAGATCACCGAGGCACTGCGCGAATTTGTTACa                                   >  1:11732819/1‑35 (MQ=255)
 ccaacgtcgcccataccataggcgattttttccCa                                   >  1:16300179‑M1/34‑35 (MQ=255)
 ccaacgtcgcccataccataggcgattttttccCa                                   >  1:6389363‑M1/34‑35 (MQ=255)
  caacgtcgcccataccataggcgattttttccccc                                  <  1:2024046‑M1/3‑3 (MQ=255)
  cGAGATCACCGAGGCACTGCGCGAATTTGTTACAg                                  >  1:20304659/1‑35 (MQ=255)
  cGAGATCACCGAGGCACTGCGCGAATTTGTTACAg                                  <  1:17167189/35‑1 (MQ=255)
   gagaTCACCGAGGCACTGCGCGAATTTGTTACAGc                                 <  1:19597251/35‑1 (MQ=255)
   gagaTCACCGAGGCACTGCGCGAATTTGTTACAGc                                 >  1:18288660/1‑35 (MQ=255)
   gagaTCACCGAGGCACTGCGCGAATTTGTTACAGc                                 <  1:9248032/35‑1 (MQ=255)
   gagaTCACCGAGGCACTGCGCGAATTTGTTACAGc                                 <  1:13379961/35‑1 (MQ=255)
   aacgtcgcccataccataggcgattttttcccccc                                 <  1:4821611‑M1/4‑4 (MQ=255)
     gaTCACCGAGGCACTGCGCGAATTTGTTACAGCCa                               >  1:15981492/1‑35 (MQ=255)
      aTCACCGAGGCACTGCGCGAATTTGTTACAGCCaa                              >  1:9154265/1‑35 (MQ=255)
      aTCACCGAGGCACTGCGCGAATTTGTTACAGCCaa                              >  1:13617753/1‑35 (MQ=255)
       tCACCGAGGCACTGCGCGAATTTGTTACAGCCaaa                             >  1:9068704/1‑35 (MQ=255)
       tCACCGAGGCACTGCGCGAATTTGTTACAGCCaaa                             >  1:10058555/1‑35 (MQ=255)
        cACCGAGGCACTGCGCGAATTTGTTACAGCCAAAt                            >  1:8324928/1‑35 (MQ=255)
         aCCGAGGCACTGCGCGAATTTGTTACAGCCAAAtt                           >  1:14682185/1‑35 (MQ=255)
         aCCGAGGCACTGCGCGAATTTGTTACAGCCAAAtt                           >  1:19828449/1‑35 (MQ=255)
         aCCGAGGCACTGCGCGAATTTGTTACAGCCAAAtt                           >  1:3527516/1‑35 (MQ=255)
          ccGAGGCACTGCGCGAATTTGTTACAGCCAAAttt                          >  1:14611912/1‑35 (MQ=255)
          ccGAGGCACTGCGCGAATTTGTTACAGCCAAAttt                          >  1:11418263/1‑35 (MQ=255)
          ccGAGGCACTGCGCGAATTTGTTACAGCCAAAttt                          >  1:4996190/1‑35 (MQ=255)
          ccGAGGCACTGCGCGAATTTGTTACAGCCAAAttt                          >  1:12335927/1‑35 (MQ=255)
          ccGAGGCACTGCGCGAATTTGTTACAGCCAAAttt                          >  1:3792258/1‑35 (MQ=255)
           cGAGGCACTGCGCGAATTTGTTACAGCCAAATTTg                         >  1:18809661/1‑35 (MQ=255)
           cGAGGCACTGCGCGAATTTGTTACAGCCAAATTTg                         >  1:11444031/1‑35 (MQ=255)
           cGAGGCACTGCGCGAATTTGTTACAGCCAAATTTg                         >  1:17562806/1‑35 (MQ=255)
           cGAGGCACTGCGCGAATTTGTTACAGCCAAATTTg                         >  1:7993522/1‑35 (MQ=255)
           cGAGGCACTGCGCGAATTTGTTACAGCCAAATTTg                         >  1:13835361/1‑35 (MQ=255)
           cGAGGCACTGCGCGAATTTGTTACAGCCAAATTTg                         >  1:7408342/1‑35 (MQ=255)
            gAGGCACTGCGCGAATTTGTTACAGCCAAATTTGc                        >  1:16541521/1‑35 (MQ=255)
            gAGGCACTGCGCGAATTTGTTACAGCCAAATTTGc                        >  1:3107512/1‑35 (MQ=255)
            gAGGCACTGCGCGAATTTGTTACAGCCAAATTTGc                        >  1:16434351/1‑35 (MQ=255)
            gAGGCACTGCGCGAATTTGTTACAGCCAAATTTGc                        >  1:7026832/1‑35 (MQ=255)
             aGGCACTGCGCGAATTTGTTACAGCCAAATTTGcc                       >  1:3077405/1‑35 (MQ=255)
             aGGCACTGCGCGAATTTGTTACAGCCAAATTTGcc                       >  1:2142192/1‑35 (MQ=255)
              ggCACTGCGCGAATTTGTTACAGCCAAATTTGCCa                      >  1:3679622/1‑35 (MQ=255)
              ggCACTGCGCGAATTTGTTACAGCCAAATTTGCCa                      >  1:4512046/1‑35 (MQ=255)
              ggCACTGCGCGAATTTGTTACAGCCAAATTTGCCa                      >  1:10406714/1‑35 (MQ=255)
               gCACTGCGCGAATTTGTTACAGCCAAATTTGCCaa                     >  1:1179461/1‑35 (MQ=255)
               gCACTGCGCGAATTTGTTACAGCCAAATTTGCCaa                     >  1:2704244/1‑35 (MQ=255)
               gCACTGCGCGAATTTGTTACAGCCAAATTTGCCaa                     >  1:14823729/1‑35 (MQ=255)
               gCACGGCGCGATTTTGTCCCAGCCAAATTTGCCaa                     <  1:609454/35‑1 (MQ=19)
                cACTGCGCGAATTTGTTACAGCCAAATTTGCCaaa                    >  1:13708006/1‑35 (MQ=255)
                cACTGCGCGAATTTGTTACAGCCAAATTTGCCaaa                    >  1:10008410/1‑35 (MQ=255)
                cACTGCGCGAATTTGTTACAGCCAAATTTGCCaaa                    >  1:18943434/1‑35 (MQ=255)
                 aCTGCGCGATTTTTTCCCAGCCAAATTTGCCAAAc                   <  1:16285341/35‑1 (MQ=16)
                 aCTGCGCGATTTTTTCCCAGCCAAATTTGCCAAAc                   <  1:17461434/35‑1 (MQ=16)
                  cTGCGCGAATTTGTTACAGCCAAATTTGCCAAACt                  >  1:15805509/1‑35 (MQ=255)
                  cTGCGCGAATTTGTTACAGCCAAATTTGCCAAACt                  >  1:8807673/1‑35 (MQ=255)
                   tGCGCGAATTTGTTACAGCCAAATTTGCCAAACtt                 >  1:2203794/1‑35 (MQ=255)
                    gcgcGATTTTGTCCCAGCCAAATTTGCCAAACTTg                <  1:2545321/35‑1 (MQ=25)
                    gcgcGAATTTGTTACAGCCAAATTTGCCAAACtag                >  1:2962446/1‑33 (MQ=255)
                     cgcgAATTTGTTACAGCCAAATTTGCCAAACTTGa               >  1:17070018/1‑35 (MQ=255)
                      gcgattttttccCAGCCAAATTTGCCAAACTTGAg              >  1:8692780‑M1/13‑35 (MQ=255)
                      gcgattttgtccCAGCCAAATTTGCCAAACTTGAg              >  1:5780013‑M1/13‑35 (MQ=255)
                      gcgAATTTGTTACAGCCAAATTTGCCAAACTTGAg              >  1:11543538/1‑35 (MQ=255)
                      gcgAATTTGTTACAGCCAAATTTGCCAAACTTGAg              >  1:5989103/1‑35 (MQ=255)
                      gcgAATTTGTTACAGCCAAATTTGCCAAACTTGAg              >  1:592962/1‑35 (MQ=255)
                      gcgAATTTGTTACAGCCAAATTTGCCAAACTTGAg              >  1:18052787/1‑35 (MQ=255)
                      gcgAATTTGTTACAGCCAAATTTGCCAAACTTGAg              >  1:18732462/1‑35 (MQ=255)
                      gcaattttttccCAGCCAAATTTGCCAAACTTGAg              >  1:12874592‑M1/13‑35 (MQ=255)
                       cgattttttccCAGCCAAATTTGCCAAACTTGAGc             >  1:8944999‑M1/12‑35 (MQ=255)
                       cgAATTTGTTACAGCCAAATTTGCCAAACTTGCGc             >  1:6879703/1‑35 (MQ=255)
                       cgAATTTGTTACAGCCAAATTTGCCAAACTTGAGc             >  1:7071252/1‑35 (MQ=255)
                       cgAATTTGTTACAGCCAAATTTGCCAAACTTGAGc             >  1:1263402/1‑35 (MQ=255)
                       cgAATTTGTTACAGCCAAATTTGCCAAACTTGAGc             >  1:15354660/1‑35 (MQ=255)
                       cgAATTTGTTACAGCCAAATTTGCCAAACTTGAGc             >  1:17988770/1‑35 (MQ=255)
                        tattttgtccCAGCCAAATTTGCCAAACTTGAGCa            >  1:2775335‑M1/11‑35 (MQ=255)
                         attttgtccCAGCCAAATTTGCCAAACTTGAGCaa           >  1:4785506‑M1/10‑35 (MQ=255)
                         attttgtccCAGCCAAATTTGCCAAACTTGAGCaa           >  1:6241117‑M1/10‑35 (MQ=255)
                         aaTTTGTTACAGCCAAATTTGCCAAACTTGAGCaa           >  1:19150077/1‑35 (MQ=255)
                         aaTTTGTTACAGCCAAATTTGCCAAACTTGAGCaa           >  1:2409838/1‑35 (MQ=255)
                           tttgtccCAGCCAAATTTGCCAAACTTGAGCAata         >  1:14345810‑M1/8‑35 (MQ=255)
                           tttGTTACAGCCAAATTTGCCAAACTTGAGCAata         >  1:14780711/1‑35 (MQ=255)
                            ttgtccCAGCCAAATTTGCCAAACTTGAGCAatat        >  1:1606401‑M1/7‑35 (MQ=255)
                            ttGTTACAGCCAAATTTGCCAAACTTGAGCAatat        >  1:6106035/1‑35 (MQ=255)
                            ttGTTACAGCCAAATTTGCCAAACTTGAGCAatat        >  1:4107654/1‑35 (MQ=255)
                              ttccCAGCCAAATTTGCCAAACTTGAGCAATAttt      >  1:19362022‑M1/5‑35 (MQ=255)
                              gTTACAGCCAAATTTGCCAAACTTGAGCAATAttt      >  1:6284295/1‑35 (MQ=255)
                              gTTACAGCCAAATTTGCCAAACTTGAGCAATAttt      >  1:5123260/1‑35 (MQ=255)
                               ttACAGCCAAATTTGCCAAACTTGAGCAATAtttt     >  1:7664352/1‑35 (MQ=255)
                               tccCAGCCAAATTTGCCAAACTTGAGCAATAtttt     >  1:10826747‑M1/4‑35 (MQ=255)
                                tcCAGCCAAATTTGCCAAACTTGAGCAATATTTTg    >  1:10888773‑M1/3‑35 (MQ=255)
                                tcCAGCCAAATTTGCCAAACTTGAGCAATATTTTg    >  1:588280‑M1/3‑35 (MQ=255)
                                tACAGCCAAATTTGCCAAACTTGAGCAATATTTTg    >  1:18482292/1‑35 (MQ=255)
                                ccCAGCCAAATTTGCCAAACTTGAGCAATATTTTg    >  1:5664923‑M1/3‑35 (MQ=255)
                                 aCAGCCAAATTTGCCAAACTTGAGCAATATTTTGa   >  1:9343088/1‑35 (MQ=255)
                                 aCAGCCAAATTTGCCAAACTTGAGCAATATTTTGa   >  1:13202321/1‑35 (MQ=255)
                                 aCAGCCAAATTTGCCAAACTTGAGCAATATTTTGa   >  1:19709115/1‑35 (MQ=255)
                                  CAGCCAAATTTGCCAAACTTGAGCAATATTTTGAc  <  1:16903856‑M1/35‑1 (MQ=255)
                                  |                                  
GTCGAGATCACCGAGGCACTGCGCGAATTTGTTACAGCCAAATTTGCCAAACTTGAGCAATATTTTGAC  >  REL606/3281435‑3281503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.