New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 4086554 | 71 (0.690) | 6 (0.070) | 5/42 | NT | 6.5% | coding (604/903 nt) | fieF | ferrous iron efflux protein F |
? | REL606 | 4620932 = | 111 (1.230) | intergenic (+49/‑41) | slt/trpR | lytic murein transglycosylase, soluble/Trp operon repressor |
Only 100 of 184 total aligned reads displayed.
ATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGA > REL606/4620898‑4620966 | ttatatagcgcgttacgtatgggatatgaggcggg > 1:7499399‑M2/35‑35 (MQ=255) ttatatagcgcgttacgcatgggatatgaggcggg > 1:9367883‑M2/35‑35 (MQ=255) atatGCTATCGTACTCTTTAGCGAGTACAACCggg < 1:17464/35‑1 (MQ=255) atatGCTATCGTACTCTTTAGCGAGTACAACCggg > 1:336513/1‑35 (MQ=255) tatGCTATCGTACTCTTTAGCGAGTACAACCgggg < 1:17959178/35‑1 (MQ=255) tatGCTATCGTACTCTTTAGCGAGTACAACCgggg < 1:11559202/35‑1 (MQ=255) atatagcgcgttacgcatgggatatgaggcggggg > 1:1462364‑M2/33‑35 (MQ=255) atGCTATCGTACTCTTTAGCGAGTACAACCggggg > 1:19141322/1‑35 (MQ=255) atGCTATCGTACTCTTTAGCGAGTACAACCggggg < 1:8813962/35‑1 (MQ=255) atGCTATCGTACTCTTTAGCGAGTACAACCggggg > 1:4842667/1‑35 (MQ=255) atGCTATCGTACTCTTTAGCGAGTACAACCggggg > 1:13389335/1‑35 (MQ=255) atGCTAGCGTACTCTTTAGCGAGTCCAACCggggg < 1:16395530/35‑1 (MQ=37) tatagcgcgttacgcatgggatatgaggcggGAGa > 1:15818132‑M2/32‑35 (MQ=255) tGCTATCGTACTCTTTAGCGAGTACAACCGGGGGa > 1:17502501/1‑35 (MQ=255) tGCTATCGTACTCTTTAGCGAGTACAACCGGGGGa > 1:5562413/1‑35 (MQ=255) tGCTATCGTACTCTTTAGCGAGTACAACCGGGGGa > 1:5987318/1‑35 (MQ=255) tGCTATCGTACTCTTTAGCGAGTACAACCGGGGGa < 1:12940924/35‑1 (MQ=255) atagcgcgttacgcatgggatatgaggcggGGCAg > 1:6164598‑M2/31‑35 (MQ=255) cTATCGTACTCTTTAGCGAGTACAACCGGGGGAgg > 1:6984529/1‑35 (MQ=255) cTATCGTACTCTTTAGCGAGTACAACCGGGGGAgg < 1:3348790/35‑1 (MQ=255) cTATCGTACTCTTTAGCGAGTACAACCGGGGGAgg > 1:15971778/1‑35 (MQ=255) tATCGTACTCTTTAGCGAGTACAACCGGGGGAGGc > 1:13862968/1‑35 (MQ=255) tATCGTACTCTTTAGCGAGTACAACCGGGGGAGGc > 1:12228648/1‑35 (MQ=255) agcgcgttacgcatgggatatgaggcggGGCAGGc > 1:7944328‑M2/29‑35 (MQ=255) aTCGTACTCTTTAGCGAGTACAACCGGGTGAGGCa > 1:7178216/1‑35 (MQ=255) aTCGTACTCTTTAGCGAGTACAACCGGGGGAGGCa > 1:13911124/1‑35 (MQ=255) aTCGTACTCTTTAGCGAGTACAACCGGGGGAGGCa < 1:3267945/35‑1 (MQ=255) aTCGTACTCTTTAGCGAGTACAACCGGGGGAGGCa > 1:5517147/1‑35 (MQ=255) aTCGTACTCTTTAGCGAGTACAACCGGGGGAGGCa > 1:1518116/1‑35 (MQ=255) aTCGTACTCTTTAGCGAGTACAACCGGGGGAGGCa > 1:3771035/1‑35 (MQ=255) aTCGTACTCTTTAGCGAGTACAACCGGGGGAGGCa > 1:11763303/1‑35 (MQ=255) tCGTACTCTTTAGCGAGTACAACCGGGGGAGGCAt < 1:9969603/35‑1 (MQ=255) tCGTACTCTTTAGCGAGTACAACCGGGGGAGGCAt > 1:1603765/1‑35 (MQ=255) tCGTACTCTTTAGCGAGTACAACCGGGGGAGGCAt > 1:13732755/1‑35 (MQ=255) cgcgttacgcatgggatatgaggcggGGGAGTCAt > 1:20281550‑M2/27‑35 (MQ=255) gcgttacgcatgggatatgaggcggGGGAGGCAtt > 1:6300936‑M2/26‑35 (MQ=255) cGTACTCTTTAGCGAGTACAACCGGGGGAGGCAtt > 1:7797115/1‑35 (MQ=255) cGTACTCTTTAGCGAGTACAACCGGGGGAGGCAtt > 1:17821781/1‑35 (MQ=255) cGTACTCTTTAGCGAGTACAACCGGGGGAGGCAtt < 1:1964595/35‑1 (MQ=255) gTACTCTTTAGCGAGTACAACCGGGGGAGGCAttt > 1:3482199/1‑35 (MQ=255) cgttacgcatgggatatgaggcggGGGAGGCAttt > 1:855444‑M2/25‑35 (MQ=255) tACTCTTTAGCGAGTACAACCGTGGGAGGCAtttt > 1:2336817/1‑35 (MQ=255) tACTCTTTAGCGAGTACAACCGGGGGAGGCAtttt > 1:4970043/1‑35 (MQ=255) tACTCTTTAGCGAGTACAACCGGGGGAGGCAtttt < 1:12907666/35‑1 (MQ=255) aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTg > 1:8162376/1‑35 (MQ=255) aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTg > 1:19903674/1‑35 (MQ=255) aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTg < 1:17200565/35‑1 (MQ=255) ctctTTAGCGAGTACAACCGGGGGAGGCATTTTGc < 1:14990881/35‑1 (MQ=255) ctctTTAGCGAGTACAACCGGGGGAGGCATTTTGc > 1:18567802/1‑35 (MQ=255) tctTTAGCGAGTACAACCGGGGGAGGCATTTTGCt > 1:14057527/1‑35 (MQ=255) tctTTAGCGAGTACAACCGGGGGAGGCATTTTGCt > 1:10571212/1‑35 (MQ=255) tctTTAGCGAGTACAACCGGGGGAGGCATTTTGCt > 1:16142567/1‑35 (MQ=255) ctTTAGCGAGTACAACCGGGGGAGGCATTTTGCtt > 1:13623952/1‑35 (MQ=255) ctTTAGCGAGTACAACCGGGGGAGGCATTTTGCtt < 1:926573/35‑1 (MQ=255) tttAGCGAGTACAACCGGGGGAGGCATTTTGCTTc > 1:1329652/1‑35 (MQ=255) tttAGCGAGTACAACCGGGGGAGGCATTTTGCTTc < 1:15132057/35‑1 (MQ=255) ttAGCGAGTACAACCGGGGGAGGCATTTTGCTTcc > 1:8547124/1‑35 (MQ=255) tAGCGAGTACAACCGGGGGAGGCATTTTGCTTccc > 1:967390/1‑35 (MQ=255) aGCGAGTACAACCGGGGGAGGCATTTTGCTTcccc < 1:7449732/35‑1 (MQ=255) aGCGAGTACAACCGGGGGAGGCATTTTGCTTcccc < 1:2793916/35‑1 (MQ=255) aGCGAGTACAACCGGGGGAGGCATTTTGCTTcccc < 1:243994/35‑1 (MQ=255) gCGAGTACAACCGGGGGAGGCATTTTGCTTccccc < 1:10494772/35‑1 (MQ=255) gCGAGTACAACCGGGGGAGGCATTTTGCTTccccc > 1:15192993/1‑35 (MQ=255) gCGAGTACAACCGGGGGAGGCATTTTGCTTccccc < 1:19964050/35‑1 (MQ=255) cGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCg < 1:19428414/35‑1 (MQ=255) cGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCg < 1:1195857/35‑1 (MQ=255) gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGc > 1:3089087/1‑35 (MQ=255) gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGc > 1:16045555/1‑35 (MQ=255) gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGc > 1:4209728/1‑35 (MQ=255) gAGTACAACAGGGGGAGGCATTTTGCTTCCCCCGc < 1:12352607/35‑1 (MQ=255) aGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCt < 1:9169115/35‑1 (MQ=255) aGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCt > 1:18697827/1‑35 (MQ=255) aGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCt < 1:5273057/35‑1 (MQ=255) aGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCt > 1:11072300/1‑35 (MQ=255) gTACAGCCGGGGGAGGCATTTTGCTTCCCCCGCTa < 1:20203225/35‑1 (MQ=255) gTACAACCGGGGGATGCATTTTGCTTCCCCCGCTa > 1:20074450/1‑35 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTa > 1:9422964/1‑35 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTa < 1:6351440/35‑1 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTa > 1:20592839/1‑35 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTa > 1:7364881/1‑35 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTa < 1:10302281/35‑1 (MQ=255) tACAACCGGGGGAGGCATTTTGCTTCCCCCGCTaa > 1:995025/1‑35 (MQ=255) aCACCCGGGGGAGGCATTTTGCTTCCCCCGCTAAc < 1:19286806/35‑1 (MQ=255) aCAACCGGGGGAGGCATTTTGCTTCCCCCGCTAAc > 1:9600404/1‑35 (MQ=255) cAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACa < 1:8005379/35‑1 (MQ=255) agccGGGGGAGGCATTTTGCTTCCCCCGCTAACaa < 1:19072885/33‑1 (MQ=255) aaCCGGGGGAGGCATTTTGCTTCCCCCGCTAACaa > 1:6025666/1‑35 (MQ=255) aaCCGGGGGAGGCATTTTGCTTCCCCCGCTAACaa < 1:18772515/35‑1 (MQ=255) aaCCGGGGGAGGCATTTTGCTCCCCCCGCTAACaa > 1:4456783/1‑35 (MQ=255) cccGGGGGAGGCATTTTGCTTCCCCCGCTAGCAAt < 1:11633347/34‑1 (MQ=255) aCCGGGGGAGGCATTTTGCTTCCCCCGCTAACAAt > 1:17092795/1‑35 (MQ=255) aCCGGGGGAGGCATTTTGCTTCCCCCGCTAACAAt > 1:14771030/1‑35 (MQ=255) aCCGGGGGAGGCATTTTGCTTCCCCCGCTAACAAt > 1:12733593/1‑35 (MQ=255) ccGGGGGAGGCATTTTGCTTCCCCCGCTAACAATg > 1:15527589/1‑35 (MQ=255) gGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCg > 1:10884537‑M2/2‑35 (MQ=255) gGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCg > 1:6021022‑M2/2‑35 (MQ=255) gggAGGCATTTTGCTTCCCCCGCTAACAATGGCGa > 1:910219/1‑35 (MQ=255) gggAGGCATTTTGCTTCCCCCGCTAACAATGGCGa > 1:9209656/1‑35 (MQ=255) gggAGGCATTTTGCTTCCCCCGCTAACAATGGCGa < 1:15638001/35‑1 (MQ=255) gggAGGCATTTTGCTTCCCCCGCTAACAATGGCGa > 1:19813558/1‑35 (MQ=255) | ATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGA > REL606/4620898‑4620966 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |