New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2583271NA (NA)32 (0.530) 3/28 NT 49.9% intergenic (‑441/+11) iscR/yfhQ DNA‑binding transcriptional repressor/predicted methyltransferase
?REL606 = 3686161 55 (0.540)coding (401/741 nt) yiaT hypothetical protein

Only 100 of 208 total aligned reads displayed.

TAGGCCTGATAAGACGCATTACGCGTCGCATCAGgcaacggctg‑‑‑‑‑‑‑‑‑  >  REL606/2583238‑2583271
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAACGGCTGGGTGGGGGA  <  REL606/3686161‑3686143
                                                     
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG                    >  1:9963353/1‑35
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG                    >  1:8659788/1‑35
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG                    <  1:20594243/35‑1
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG                    <  1:19859616/35‑1
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG                    >  1:18904059/1‑35
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG                    >  1:16555565/1‑35
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG                    <  1:15809410/35‑1
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG                    >  1:14144478/1‑35
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG                    <  1:12820538/35‑1
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG                    <  1:11494923/35‑1
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGG                    <  1:11127429/35‑1
 AGGCCTTATAAGACGCATTACGCGTCGCATCAGGC                   >  1:15477949/1‑35
 AGGCCTGATAAGACGCATTATGCGTCGCATCAGGC                   >  1:10653076/1‑35
 AGGCCTGATAAGACGCATTACGCGTCGCATCAGGC                   <  1:16901007/35‑1
 AGGCCTGATAAGACGCATTACGCGTCGCATCAGGC                   <  1:3020346/35‑1
 AGGCCTGATAAGACGCATTACGCGTCGCATCAGGC                   <  1:14533479/35‑1
 AGGCCTGATAAGACGCATTACGCGTCGCATCAGGC                   >  1:1922724/1‑35
  GGCCTGATAAGACGCATTACGCGTCGCATCAGGCA                  <  1:11833382/35‑1
  GGCCTGATAAGACGCATTACGCGTCGCATCAGGCA                  >  1:3210125/1‑35
  GGCCTGATAAGACGCATTACGCGTCGCATCAGGCA                  <  1:7284933/35‑1
  GGCCTGATAAGACGCATTACGCGTCGCATCAGGCA                  <  1:14018855/35‑1
  GGCCTGATAAGACGCATTACGCGTCGCATCAGGCA                  >  1:5636643/1‑35
   GCCTGATAAGACGCATTACGCGTCGCATCAGGCAA                 >  1:2163620/1‑35
   GCCTGATAAGACGCATTACGCGTCGCATCAGGCAA                 <  1:19377031/35‑1
   GCCTGATAAGACGCATTACGCGTCGCATCAGGCAA                 >  1:6081075/1‑35
   GCCTGATAAGACGCATTACGCGTCGCATCAGGCAA                 >  1:8537222/1‑35
   GCCTGATAAGACGCATTACGCGTCGCATCAGGCAA                 >  1:16671964/1‑35
   GCCTGATAAGACGCATTACGCGTCGCATCAGGCAA                 >  1:9384337/1‑35
    CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC                >  1:19029707/1‑35
    CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC                <  1:18019542/35‑1
    CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC                <  1:3629265/35‑1
    CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC                <  1:14472761/35‑1
    CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC                >  1:5861182/1‑35
    CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC                <  1:6737280/35‑1
    CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC                <  1:9499053/35‑1
    CCTGATAAGACGCATTACGCGTCGCATCAGGCAAC                >  1:11657467/1‑35
     CTGATAAGACGCATTACGCGTCGCATCAGGCAAag               <  1:16056878/35‑3
     CTGATAAGACGCATTACGCGTCGCATCAGGCAACG               <  1:18214455/35‑1
     CTGATAAGACGCATTACGCGTCGCATCAGGCAACG               >  1:92857/1‑35
     CTGATAAGACGCATTACGCGTCGCATCAGGCAACG               >  1:18064223/1‑35
      TGATAAGACGCATTACGCGTCGCATCAGGCAACGG              <  1:1056423/35‑1
      TGATAAGACGCATTACGCGTCGCATCAGGCAACGG              <  1:643100/35‑1
      TGATAAGACGCATTACGCGTCGCATCAGGCAACGG              >  1:7705043/1‑35
      TGATAAGACGCATTACGCGTCGCATCAGGCAACGG              <  1:14840055/35‑1
       GATAAGACGCATTACGCGTCGCATCAGGCAACGGC             >  1:845169/1‑35
       GATAAGACGCATTACGCGTCGCATCAGGCAACGGC             >  1:2350919/1‑35
       GATAAGACGCATTACGCGTCGCATCAGGCAACGGC             <  1:8879568/35‑1
        ATAAGACGCATTACGCGTCGCATCAGGCAACGGCT            <  1:13739306/35‑1
        ATAAGACGCATTACGCGTCGCATCAGGCAACGGCT            >  1:5428367/1‑35
        ATAAGACGCATTACGCGTCGCATCAGGCAACGGCT            <  1:445628/35‑1
        ATAAGACGCATTACGCGTCGCATCAGGCAAAGGCT            <  1:15997001/35‑1
        ATAAGACGCATTACGCGTCGCATAAGGCAACGGCT            <  1:20069985/35‑1
         TAAGACGCATTACGCGTCGCATCAGGCAACGGCTG           <  1:6902223/35‑1
         TAAGACGCATTACGCGTCGCATCAGGCAACGGCTG           >  1:11391053/1‑35
         TAAGACGCATTACGCGTCGCATCAGGCAACGGCTG           >  1:4371293/1‑35
         TAAGACGCATTACGCGTCGCATCAGGCAACGGCTG           >  1:15048114/1‑35
         TAAGACGCATTACGCGTCGCATCAGGCAACGGCTG           >  1:17485590/1‑35
          AAGACGCATTACGCGTCGCATCAGGCAACGGCTGG          >  1:17345753/1‑35
          AAGACGCATTACGCGTCGCATCAGGCAACGGCTGG          >  1:342602/1‑35
          AAGACGCATTACGCGTCGCATCAGGCAACGGCTGG          >  1:18640028/1‑35
          AAGACGCATTACGCGTCGCATCAGGCAACGGCTGG          >  1:14886805/1‑35
           AGACGCATTACGCGTCGCATCAGGCAACGGCTGGG         >  1:17827781/1‑35
           AGACGCATTACGCGTCGCATCAGGCAACGGCTGGG         >  1:8022352/1‑35
           AGACGCATTACGCGTCGCATCAGGCAACGGCTGGG         >  1:292020/1‑35
           AGACGCATTACGCGTCGCATCAGGCAACGGCTGGG         >  1:15327606/1‑35
           AGACGCATTACGCGTCGCATCAGGCAACGGCTGGG         >  1:2648281/1‑35
           AGACGCATTACGCGTCGCATCAGGCAACGGCTGGG         >  1:15600769/1‑35
            GACGCATTACGCGTCTCATCAGGCAACGGCTGGGg        >  1:12672594/1‑34
            GACGCATTACGCGTCTCATCAGGCAACGGCTGGGg        >  1:5323601/1‑34
            GACGCATTACGCGTCGCATCAGGCAACGGCTGGGg        >  1:14330618/1‑34
            GACGCATTACGCGTCGCATCAGGCAACGGCTGGGg        >  1:2748991/1‑34
             ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg       >  1:10314786/1‑33
             ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg       >  1:13294247/1‑33
             ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg       >  1:11006735/1‑33
             ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg       >  1:9711751/1‑33
             ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg       >  1:8297873/1‑33
             ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg       >  1:1776677/1‑33
             ACGCATTACGCGTCGCATCAGGCAACGGCTGGGgg       >  1:696539/1‑33
              CGCATTACGCGTCGCATCAGGCAACGGCTGGGGGG      >  1:13362243/1‑35
              CGCATTACGCGTCGCATCAGGCAACGGCTGGGGGG      >  1:1623568/1‑35
              CGCATTACGCGTCGCATCAGGCAACGGCTGGGGGG      >  1:20453023/1‑35
              CGCATTACGCGTCGCATCAGGCAACGGCTGGGGGG      >  1:13938402/1‑35
               GCATTACGCGTCGCATCAGGCAACGGCTGGGGGGG     >  1:10070073/1‑35
               GCATTACGCGTCGCATCAGGCAACGGCTGGGGGGG     >  1:7228551/1‑35
               GCATTACGCGTCGCATCAGGCAACGGCTGGGGGGG     >  1:4892767/1‑35
               GCATTACGCGTCGCATCAGGCAACGGCTGGGGGGG     >  1:4021739/1‑35
               GCATTACGCGTCGCATCAGGCAACGGCTGGGGGGG     >  1:14693484/1‑35
                CATTACGCGTCGCATCAGGCAACGGCTGGGGGGGG    >  1:716638/1‑35
                CATTACGCGTCGCATCAGGCAACGGCTGGGGGGGG    >  1:1310974/1‑35
                CATTACGCGTCGCATCAGGCAACGGCTGGGGGGGG    >  1:12150379/1‑35
                CATTACGCGTCGCATCAGGCAACGGCTGGGGGGGG    >  1:17035659/1‑35
                 ATTACGCGTCGCATCAGGCAACGGCTGGGGGGGGG   >  1:3837067/1‑35
                 ATTACGCGTCGCATCAGGCAACGGCTGGGGGGGGG   >  1:2536266/1‑35
                 ATTACGCGTCGCATCAGGCAACGGCTGGGGGGGGG   >  1:20491208/1‑35
                 ATTACGCGTCGCATCAGGCAACGGCTGGGGGGGGG   >  1:15859047/1‑35
                 ATTACGCGTCGCATCAGGCAACGGCTGGGGGGGGG   >  1:1003579/1‑35
                  TTACGCGTCGCATCAGGCAACGGCTGGGGGGGGGg  >  1:6814173/1‑34
                  TTACGCGTCGCATCAGGCAACGGCTGGGGGGGGGg  >  1:1365427/1‑34
                  TTACGCGTCGCATCAGGCAACGGCTGGGGGGGGGg  >  1:20315824/1‑34
                  TTACGCGTCGCATCAGGCAACGGCTGGGGGGGGGg  >  1:12051679/1‑34
                                                     
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGgcaacggctg‑‑‑‑‑‑‑‑‑  >  REL606/2583238‑2583271
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAACGGCTGGGTGGGGGA  <  REL606/3686161‑3686143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.