New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1609469 =55 (0.540)5 (0.060) 3/42 NT 9.8% coding (36/207 nt) ybcW predicted protein
?REL606 2545121 = 44 (0.490)coding (1259/2067 nt) ppk polyphosphate kinase

AATGCATAAAGATCAATACACTGATGCCCCCTCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1609505‑1609469
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagAAGCAGGCGTGCACGTTATCTTCTCTGCGCCGGG  >  REL606/2545121‑2545154
                                                                       
AATGCATAAAGATCAATACACTGATGCCCCCTCCC                                      <  1:10816509/35‑1
AATGCATAAAGATCAATACACTGATGCCCCCTCCC                                      >  1:7942152/1‑35
 ATGCATAAAGATCAATACACTGATGCCCCCTCCCA                                     <  1:3512074/35‑1
                          gCCCCTGCCAGAAGCAGGCGTGCACGTTATCTTCT            <  1:6431477/34‑1
                          ccgCCTCCCAGAAGCAGGCGTGCACGTTATCTTCT            <  1:10682974/32‑1
                          CCCCCTGCCAGAAGCAGGCGTGCACGTTATCTTCT            <  1:9476731/35‑1
                          CCCCCTCCCAGAAGCAGGCGTGCACGTTATCTTCT            <  1:9340590/35‑1
                           CCCCTCCCAGAAGCAGGCGTGCACGTTATCTTCTC           <  1:6756755/35‑1
                            CCCTGCCAGAAGCAGGCGTGCACGTTATCTTCTCT          <  1:17710880/35‑1
                             ccgCCCAGAAGCAGGCGTGCACGTTATCTTCTCTG         <  1:3444392/32‑1
                             CCTGCCAGAAGCAGGCGTGCACGTTATCTTCTCTG         <  1:10828342/35‑1
                              ctgCCAGAAGCAGGCGTGCACGTTATCTTCTCTGC        <  1:16247093/32‑1
                              CTCCCAGAAGCAGGCGTGCACGTTATCTTCTCTGC        <  1:12419557/35‑1
                              CTCCCAGAAGCAGGCGTGCACGTTATCTTCTCTGC        <  1:9277082/35‑1
                              CTCCCAGAAGCAGGCGTGCACGTTATCTTCTCTGC        <  1:1431097/35‑1
                               tgCCAGAAGCAGGCGTGCACGTTATCTTCTCTGCG       <  1:9413159/33‑1
                               tgCCAGAAGCAGGCGTGCACGTTATCTTCTCTGCG       <  1:5585775/33‑1
                               cgCCAGAAGCAGGCGTGCACGTTATCTTCTCTGCG       <  1:15462533/33‑1
                               TCCCAGAAGCAGGCGTGCACGTTATCTTCTCTGCG       <  1:3755660/35‑1
                               TCCCAGAAGCAGGCGTGCACGTTACCTTCTCTGCG       <  1:10785066/35‑1
                                aCCAGAAGCAGGCGTGCACGTTATCTTCTCTGCGC      <  1:19660272/34‑1
                                CCCAGAAGCAGGCGTGCACGTTATCTTCTCTGCGC      <  1:7420024/35‑1
                                 CCAGAAGCAGGCGTGCACGTTATCTTCTCTGCGCC     <  1:11960714/35‑1
                                 CCAGAAGCAGGCGTGCACGTTATCTTCTCTGCGCC     <  1:8438448/35‑1
                                 CCAGAAGCAGGCGTGCACGTTATCTTCTCTGCGCC     <  1:8241151/35‑1
                                 CCAGAAGCAGGCGTGCACGTTATCTTCTCTGCGCC     <  1:16472067/35‑1
                                  CAGAAGCAGGCGTGCACGTTATCTTCTCTGCGCCG    <  1:1236060/35‑1
                                  CAGAAGCAGGCGTGCACGTTATCTTCTCTGCGCCG    >  1:13175194/1‑35
                                  CAGAAGCAGGCGTGCACGTTATCTTCTCTGCGCCG    >  1:13259693/1‑35
                                  CAGAAGCAGGCGTGCACGTTATCTTCTCTGCGCCG    >  1:16068402/1‑35
                                  CAGAAGCAGGCGTGCACGTTATCTTCTCTGCGCCG    >  1:6265230/1‑35
                                  CAGAAGCAGGCGTGCACGTTATCTTCTCTGCGCCG    <  1:16874693/35‑1
                                  CAGAAGCAGGCGTGCACGTTATCTTCTCTGCGCCG    >  1:18488758/1‑35
                                   AGAAGCAGGCGTGCACGTTATCTTCTCTGCGCCGG   <  1:11633055/35‑1
                                   AGAAGCAGGCGTGCACGTTATCTTCTCTGCGCCGG   >  1:9290921/1‑35
                                   AGAAGCAGGCGTGCACGTTATCTTCTCTGCGCCGG   <  1:17756231/35‑1
                                   AGAAGCAGGCGTGCACGTTATCTTCTCTGCGCCGG   <  1:12677065/35‑1
                                    GAAGCAGGCGTGCACGTTATCTTCTCTGCGCCGGG  >  1:7237557/1‑35
                                    GAAGCAGGCGTGCACGTTATCTTCTCTGCGCCGGG  >  1:4474336/1‑35
                                    GAAGCAGGCGTGCACGTTATCTTCTCTGCGCCGGG  >  1:8718516/1‑35
                                    GAAGCAGGCGTGCACGTTATCTTCTCTGCGCCGGG  <  1:9146927/35‑1
                                    GAAGCAGGCGTGCACGTTATCTTCTCTGCGCCGGG  <  1:17561066/35‑1
                                                                       
AATGCATAAAGATCAATACACTGATGCCCCCTCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1609505‑1609469
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagAAGCAGGCGTGCACGTTATCTTCTCTGCGCCGGG  >  REL606/2545121‑2545154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.