New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3741965 | NA (NA) | 80 (0.780) | 37/48 | NT | 93.0% | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 3742143 = | 6 (0.060) | pseudogene (223/405 nt) | waaT | UDP‑galactose:(Glucosyl) LPS alpha1,2‑galactosyltransferase WaaT |
Only 100 of 128 total aligned reads displayed.
GAATACTTTCACTCAGATATTCAAAAGACAATACCCTGAAGTATGTCGCGTACGACCAAAACTGTGAC > REL606/3742110‑3742177 | gAATACTTTCACTCAGATATTCAAAAGACAATAcc < 1:19947892/35‑1 (MQ=255) catacactaactcagtaagttggcagcatcacccc > 1:12628856‑M2/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcacccc > 1:7955335‑M2/34‑35 (MQ=255) catacactaaatcagtaagttggcagcatcacccc < 1:11592000‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcacccc < 1:8255701‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcacccc < 1:19627159‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcacccc < 1:1059753‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcacccc < 1:2969322‑M2/2‑1 (MQ=255) catacactaaatcagtaagttggcagcatcacccc > 1:2990411‑M2/34‑35 (MQ=255) atacactaaatcagtaagttggcagcatcaccccc > 1:12497626‑M2/33‑35 (MQ=255) atacactaaatcagtaagttggcagcatcaccccc > 1:5408242‑M2/33‑35 (MQ=255) aaTCCTTTCACTCAGATATTCAAAAGACAATAccc < 1:20599481/35‑1 (MQ=255) tacactaaatcagtaagttggcagcatcaccCCCt < 1:20528968‑M2/4‑1 (MQ=255) tacactaaatcagtaagttggcagcatcaccCCCt > 1:398021‑M2/32‑35 (MQ=255) tacactaaatcagtaagttggcagcatcaccCCCt < 1:1763276‑M2/4‑1 (MQ=255) tacactaaatcagtaagttggcagcatcaccCCCt < 1:19138096‑M2/4‑1 (MQ=255) tacactaaatcagtaagttggcagcatcaccCCCt < 1:13929920‑M2/4‑1 (MQ=255) acactaaatcagtaagttggcagcatcaccCCCTg < 1:15506513‑M2/5‑1 (MQ=255) acactaaatcagtaagttggcagcatcaccCCCTg < 1:11437351‑M2/5‑1 (MQ=255) cactaaatcagtaagttggcagcatcaccCCCTGa < 1:11789356‑M2/6‑1 (MQ=255) cactaaatcagtaagttggcagcatcaccCCCTGa > 1:6391404‑M2/30‑35 (MQ=255) actaaatcagtaagttggcagcatcaccCCCTGaa > 1:19417802‑M2/29‑35 (MQ=255) ctaaatcagtaagttggcagcatcaccCCCTGAAg < 1:5129980‑M2/8‑1 (MQ=255) ctaaatcagtaagttggcagcatcaccCCCTGAAg > 1:12152402‑M2/28‑35 (MQ=255) ctaaatcagtaagttggcagcatcaccCCCTGAAg > 1:16270203‑M2/28‑35 (MQ=255) ttCACTCAGATATTCAAAAGACAATACCCTGAAGt < 1:19379765/35‑1 (MQ=255) taaatcagtaagttggcagcatcaccCCCTGAAGt < 1:13801616‑M2/9‑1 (MQ=255) taaatcagtaagttggcagcatcaccCCCTGAAGt < 1:5960916‑M2/9‑1 (MQ=255) aaatcagtaagttggcagcatcaccCCCTGAAGTa < 1:18280996‑M2/10‑1 (MQ=255) aaatcagtaagttggcagcatcaccCCCTGAAGTa > 1:5591522‑M2/26‑35 (MQ=255) aaatcagtaagttggcagcatcaccCCCTGAAGTa < 1:6779919‑M2/10‑1 (MQ=255) aaatcagtaagttggcagcatcaccCACTGAAGTa < 1:458091‑M2/10‑1 (MQ=255) aatcagtaagttggcagcatcaccCCCTGAAGTAt < 1:7970153‑M2/11‑1 (MQ=255) atcagtaatttggcagcatcaccCCCTGAAGTATg > 1:18061234‑M2/24‑35 (MQ=255) tcagtaagttggcagcatcaccCCCTGAAGTATGt < 1:2267144‑M2/13‑1 (MQ=255) tcagtaagttggcagcatcaccCCCTGAAGTATGt > 1:8321590‑M2/23‑35 (MQ=255) tcagtaagttggcagcatcaccCCCTGAAGTATGt < 1:14997950‑M2/13‑1 (MQ=255) tcagtaagttggcagcatcaccCCCTGAAGTATGt < 1:1320037‑M2/13‑1 (MQ=255) cTCAGATATTCAAAAGACAATACCCTGAAGTATGt > 1:9107757/1‑35 (MQ=255) cTCAGATATTCAAAAGACAATACCCTGAAGTATGt < 1:19226672/35‑1 (MQ=255) cTCAGATATTCAAAAGACAATACCCTGAAGTATGt < 1:16620613/35‑1 (MQ=255) cagtaagttggcagcatcaccCCCTGAAGTATGTc < 1:1744757‑M2/14‑1 (MQ=255) cagtaagttggcagcatcaccCCCTGAAGTATGTc < 1:19443575‑M2/14‑1 (MQ=255) cagtaagttggcagcatcaccACCTGAAGTATGTc < 1:548400‑M2/14‑1 (MQ=255) cAGATATTCAAAAGACAATACCCTGAAGTATGTcg > 1:6135338/1‑35 (MQ=255) agtaagttggcagcatcaccCCCTGAAGTATGTcg > 1:13123877‑M2/21‑35 (MQ=255) agtaagttggcagcatcaccCCCTGAAGTATGTcg > 1:66492‑M2/21‑35 (MQ=255) gtaagttggcagcatcaccCCCTGAAGTATGTcgc < 1:9529420‑M2/16‑1 (MQ=255) gtaagttggcagcatcaccCCCTGAAGTATGTcgc < 1:14231620‑M2/16‑1 (MQ=255) taagttggcagcatcaccCCCTGAAGTATGTcgcg > 1:16407572‑M2/19‑35 (MQ=255) taagttggcagcatcaccCCCTGAAGTATGTcgcg < 1:15214190‑M2/17‑1 (MQ=255) taagttggcagcatcaccCCCTGAAGTATGTcgcg > 1:10341834‑M2/19‑35 (MQ=255) aagttggcagcatcaccCCCTGAAGTATGTCGCGt > 1:14077579‑M2/18‑35 (MQ=255) aagttggcagcatcaccCCCTGAAGTATGTCGCGt < 1:1455046‑M2/18‑1 (MQ=255) agttggcagcatcaccCCCTGGAGTATGTCGCGTa < 1:8409675‑M2/19‑1 (MQ=255) agttggcagcatcaccCCCTGAAGTATGTCGCGTa < 1:13968762‑M2/19‑1 (MQ=255) agttggcagcatcaccCCCTGAAGTATGTCGCGTa < 1:18244775‑M2/19‑1 (MQ=255) agttggcagcatcaccCCCTGAAGTATGTCGCGTa < 1:11257832‑M2/19‑1 (MQ=255) agttggcagcataaccCCCTGAAGTATGTCGCGTa < 1:15526474‑M2/19‑1 (MQ=255) ttggcagcatcaccCCCTGAAGTATGTCGCGTACg < 1:13917538‑M2/21‑1 (MQ=255) ttggcagcatcaccCCCTGAAGTATGTCGCGTACg > 1:7810300‑M2/15‑35 (MQ=255) ttggcagcatcaccCCCTGAAGTATGTCGCGTACg < 1:7012943‑M2/21‑1 (MQ=255) tggcagcatcaccCCCTGAAGTATGTCGCGTACGa < 1:16880599‑M2/22‑1 (MQ=255) tggcagcatcaccCCCTGAAGTATGTCGCGTACGa < 1:11242285‑M2/22‑1 (MQ=255) ggcagcatcaccCCCTGAAGTATGTCGCGTACGAc < 1:16298996‑M2/23‑1 (MQ=255) ggcagcatcaccCCCTGAAGTATGTCGCGTACGAc > 1:10096500‑M2/13‑35 (MQ=255) cAAAAGACAATACCCTGAAGTATGTCGCGTAcaga > 1:9807989/1‑32 (MQ=255) gcagcatcaccCCCTGAAGTATGTCGCGTACGAcc < 1:2689141‑M2/24‑1 (MQ=255) cagcatcaccCCCTGAAGTATGTCGCGTACGACCa < 1:16034741‑M2/25‑1 (MQ=255) cagcatcaccCCCTGAAGTATGTCGCGTACGACCa < 1:11099582‑M2/25‑1 (MQ=255) cagcatcaccCCCTGAAGTATGTCGCGTACGACCa < 1:9313785‑M2/25‑1 (MQ=255) cagcatcaccCCCTGAAGTATGTCGCGTACGACCa > 1:19603438‑M2/11‑35 (MQ=255) cagcatcaccCCCTGAAGTATGTCGCGTACGACCa > 1:3520169‑M2/11‑35 (MQ=255) cagcatcaccCCCTGAAGTATGTCGCGTACGACCa < 1:301329‑M2/25‑1 (MQ=255) agcatcaccCCCTGAAGTATGTCGCGTACGACCaa > 1:17880708‑M2/10‑35 (MQ=255) agcatcaccCCCTGAAGTATGTCGCGTACGACCaa > 1:17586473‑M2/10‑35 (MQ=255) agcatcaccCCCTGAAGTATGTCGCGTACGACCaa > 1:16979530‑M2/10‑35 (MQ=255) agcatcaccCCCTGAAGTATGTCGCGTACGACCaa > 1:13365914‑M2/10‑35 (MQ=255) gcatcaccCCCTGAAGTATGTCGCGTACGACCaaa > 1:19386668‑M2/9‑35 (MQ=255) gcatcaccCCCTGAAGTATGTCGCGTACGACCaaa < 1:9466880‑M2/27‑1 (MQ=255) gcatcaccCCCTGAAGTATGTCGCGTACGACCaaa < 1:11188796‑M2/27‑1 (MQ=255) atcaccCCCTGAAGTATGTCGCGTACGACCAAAAc > 1:11550226‑M2/7‑35 (MQ=255) tccccCCCTGAAGTATGTCGCGTACGACCAAAACt < 1:6045040‑M2/30‑1 (MQ=255) tcaccCCCTGAAGTATGTCGCGTACGACCAAAACt > 1:14358024‑M2/6‑35 (MQ=255) tcaccCCCTGAAGTATGTCGCGTACGACAAAAACt < 1:9787898‑M2/30‑1 (MQ=255) taccCCCTGAAGTATGTCGCGTACGACCAAAACtg < 1:5173083‑M2/31‑1 (MQ=255) caccCCCTGAAGTATGTCGCGTACGACCAAAACtg < 1:18198865‑M2/31‑1 (MQ=255) caccCCCTGAAGTATGTCGCGTACGACCAAAACtg < 1:8397776‑M2/31‑1 (MQ=255) accCCCTGAAGTATGTCGCGTACGACCAAAACtgt > 1:8031034‑M2/4‑35 (MQ=255) ccCCCTGAAGTATGTCGCGTACGACCAAAACtgtg < 1:3885832‑M2/33‑1 (MQ=255) ccCCCTGAAGTATGTCGCGTACGACCAAAACtgtg < 1:19077717‑M2/33‑1 (MQ=255) ccCCCTGAAGTATGTCGCGTACGACCAAAACtgtg < 1:4855282‑M2/33‑1 (MQ=255) ccCCCTGAAGTATGTCGCGTACGAACAAAACtgtg < 1:898270‑M2/33‑1 (MQ=255) cccTGAAGTATGTCGCGTACGACCAAAACTGTGAc < 1:9878983/35‑1 (MQ=255) cccTGAAGTATGTCGCGTACGACCAAAACTGTGAc < 1:9162582/35‑1 (MQ=255) cccTGAAGTATGTCGCGTACGACCAAAACTGTGAc < 1:10500115/35‑1 (MQ=255) cccTGAAGTATGTCGCGTACGACCAAAACTGTGAc < 1:15041090/35‑1 (MQ=255) cccTGAAGTATGTCGCGTACGACCAAAACTGTGAc < 1:13713780/35‑1 (MQ=255) cccTGAAGTATGTCGCGTAAGACCAAAACTGTGAc < 1:9547693/35‑1 (MQ=255) cccTGAAGTATGTAGCGTACGACCAAAACTGTGAc < 1:19743752/35‑1 (MQ=255) | GAATACTTTCACTCAGATATTCAAAAGACAATACCCTGAAGTATGTCGCGTACGACCAAAACTGTGAC > REL606/3742110‑3742177 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |