New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1493949 =71 (0.690)13 (0.160) 5/38 NT 17.3% coding (533/1062 nt) yncE hypothetical protein
?REL606 = 1619524 68 (0.840)intergenic (‑133/+84) rem/hokD predicted protein/small toxic polypeptide

CCAGACCGGTACTCATTTTACCGGTGTTCTGGATGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1493987‑1493949
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTTC  <  REL606/1619524‑1619491
                                                                         
CCAGACCGGTACTCATTTTACCGGTGTTCTGGATG                                        >  1:18203157/1‑35
CCAGACCGGTACTCATTTTACCGGTGTTCTGGATG                                        >  1:18805499/1‑35
CCAGACCGGTACTCATTTTACCGGTGTTCTGGATG                                        >  1:3740289/1‑35
CCAGACCGGTACTCATTTTACCGGTGTTCTGGATG                                        <  1:4560170/35‑1
CCAGACCGGTACTCATTTTACCGGTGTTCTGGATG                                        >  1:9293947/1‑35
 CAGGCCGGTACTCATTTTACCGGTGTTCTGGATGG                                       <  1:4005279/35‑1
 CAGACCGGTACTCATTTTACCGGTGTTCTGGATGG                                       >  1:17674301/1‑35
 CAGACCGGTACTCATTTTACCGGTGTTCTGGATGG                                       >  1:15021576/1‑35
 CAGACCGGTACTCATTTTACCGGTGTTCTGGATGG                                       >  1:13010276/1‑35
 CAGACCGGTACTCATTTTACCGGTGTTCTGGATGG                                       >  1:11236303/1‑35
 CAGACCGGTACTCATTTTACCGGTGTTCTGGATGG                                       <  1:10503620/35‑1
  AGACCGGTACTCATTTTACCGGTGTTCTGGATGGC                                      >  1:9626797/1‑35
  AGACCGGTACTCATTTTACCGGTGTTCTGGATGGC                                      <  1:7252037/35‑1
  AGACCGGTACTCATTTTACCGGTGTTCTGGATGGC                                      <  1:714071/35‑1
  AGACCGGTACTCATTTTACCGGTGTTCTGGATGGC                                      >  1:1429901/1‑35
   GACCGGTACTCATTTTACCGGTGTTCTGGATGGCG                                     <  1:10964658/35‑1
   GACCGGTACTCATTTTACCGGTGTTCTGGATGGCG                                     >  1:18778460/1‑35
   GACCGGTACTCATTTTACCGGTGTTCTGGATGGCG                                     >  1:15936910/1‑35
    ACCGGTACTCATTTTACCGGTGTTCTGGATGGCGG                                    <  1:10034769/35‑1
    ACCGGTACTCATTTTACCGGTGTTCTGGATGGCGG                                    <  1:17270124/35‑1
    ACCGGTACTCATTTTACCGGTGTTCTGGATGGCGG                                    <  1:2693915/35‑1
    ACCGGTACTCATTTTACCGGTGTTCTGGATGGCGG                                    <  1:11751545/35‑1
     CCGGTACTCATTTTACCGGTGTTCTGGATGGCGGG                                   >  1:12106453/1‑35
      CGGTACTCATTTTACCGTTGTTCTGGATGGCGGGg                                  >  1:935245/1‑34
      CGGTACTCATTTTACCGGTGTTCTGGATGGCGGGg                                  >  1:12091203/1‑34
       GGTACTCATTTTACCGGTGTTCTGGATGGCGGGTT                                 >  1:17900060/1‑35
        GTACTCATTTTACCGGTGTTCTGGATGGCGGGGTT                                >  1:17586912/1‑35
         TACTCATTTTACCGGTGTGCTGGATGGCGGGTTTT                               >  1:9579456/1‑35
          ACTCATTTTACCGGTGTTCTGGATGGCGGGTTTTT                              >  1:270466/1‑35
           CTCATTTTACCGGTGTTCTGGATGGCGGGTTTTag                             >  1:10955909/1‑33
           CTCATTTGACCGGTGTTCTGGATGGCGGGTTTTTG                             >  1:18308091/1‑35
            TCATTTTACCGGTGTTCTGGATGGCGGGTTTTTtg                            >  1:8290189/1‑33
            TCATTTTACCGGTGTTCTGGATGGCGGGTTTTAGT                            >  1:14411600/1‑35
             CATTTTACCGGTGTTCTGGATGGCGGGTTTTTGTT                           >  1:17076364/1‑35
             CATTTTACCGGTGTTCTGGATGGCGGGTTTTTGTT                           >  1:1617294/1‑35
               TTTTACCGGTGTTCTGGATGGCGGGTTTTTGTTTT                         >  1:13754252/1‑35
               TTTTACCGGTGTTCTGGATGGCGGGTTTTTGTTTT                         >  1:3632109/1‑35
               TTTTACCGGTGTTCTGGATGGCGGGTTTTCGTTTg                         >  1:6922144/1‑34
               TTTTACCGGTGTTCTGGATGGCGGGTTTCTGTTTT                         >  1:7512858/1‑35
                 TTACCGGTGTTCTGGATGGCGGGTTTTTGTTTgtt                       >  1:7700613/1‑32
                 TTACCGGTGTTCTGGATGGCGGGTTTTTGTTTTTt                       >  1:13756006/1‑34
                  TACCGGTGTTCTGGATGGCGGGTTTTTGTTTTTtt                      >  1:929666/1‑33
                                  GGCGGGTTTTTGTTTTTATTTTCAACGCGTTTGAA      <  1:6192710/35‑1
                                  GGCGGGTTTTTGTTTTTATTTTCAACGCGTTTGAA      >  1:11931900/1‑35
                                  GGCGGGTTTTTGTTTTTATTTTCAACGCGTTTGAA      >  1:10061760/1‑35
                                  GGCGGGGTTTTGTTTTTATTTTCAACGCGTTTGAA      >  1:17856380/1‑35
                                  GGCGCGTTTTTGTTTTTATTTTCAACGCGTTTGAA      <  1:9383852/35‑1
                                   nCGGGNNTTTGTTTTTATTTTCAACGCGTTTGAAG     <  1:16437002/34‑1
                                   GCGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAG     >  1:12524557/1‑35
                                   GCGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAG     >  1:9743582/1‑35
                                   GCGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAG     <  1:6517045/35‑1
                                   GCGGGGTTTTGTTTTTATTTTCAACGCGTTTGAAG     >  1:17563354/1‑35
                                    CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT    >  1:16744628/1‑35
                                    CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT    >  1:9412540/1‑35
                                    CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT    <  1:3653118/35‑1
                                    CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT    <  1:4080292/35‑1
                                    CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT    >  1:1281762/1‑35
                                    CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT    >  1:493672/1‑35
                                    CGGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGT    >  1:5885642/1‑35
                                     GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT   >  1:4587415/1‑35
                                     GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT   >  1:14254217/1‑35
                                     GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT   >  1:9060267/1‑35
                                     GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT   >  1:3393636/1‑35
                                     GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT   <  1:10452702/35‑1
                                     GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT   >  1:15243980/1‑35
                                     GGGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTT   >  1:5216480/1‑35
                                      GGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTTC  <  1:295981/35‑1
                                      GGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTTC  >  1:10109535/1‑35
                                                                         
CCAGACCGGTACTCATTTTACCGGTGTTCTGGATGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1493987‑1493949
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGTTTTTGTTTTTATTTTCAACGCGTTTGAAGTTC  <  REL606/1619524‑1619491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.