New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 422591 =80 (0.780)12 (0.150) 3/38 NT 17.9% intergenic (‑278/+184) cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide transporter
?REL606 = 2605528 47 (0.580)coding (679/1254 nt) glyA serine hydroxymethyltransferase

Only 100 of 214 total aligned reads displayed.

GTTTAACAAATAATTATCATTATGGTGACAATTGGGTGGGGGGGAAAATAAAGACTCATTAGCTGAATC  >  REL606/422557‑422625
                                  |                                  
ggccgcagcgcggacccgccagggttttgtgagtg                                    >  1:7487442‑M1/35‑35 (MQ=255)
gTTTAACAAATAATTATCATTATGGTGACAATtgg                                    <  1:14899159/35‑1 (MQ=255)
gTTTAACAAATAATTATCATTATGGTGACAATtgg                                    <  1:6567890/35‑1 (MQ=255)
 tttAACAAATAATTATCATTATGGTGACAATtggg                                   >  1:3832444/1‑35 (MQ=255)
 gtttttctcgcggactccggttccgtagcgggggg                                   <  1:12184170‑M1/3‑1 (MQ=255)
 gccgccgcgcggacccgccagggttttgtgagtgg                                   <  1:10259806‑M1/2‑1 (MQ=255)
 gccgccgcgcggacccgccagggttttgtgagtgg                                   <  1:697361‑M1/2‑1 (MQ=255)
 caggggaacagccagcagaccaccggcgagagcgg                                   <  1:11648480‑M1/2‑1 (MQ=255)
  ttAACAAATAATTATCATTATGGTGACAATtgggt                                  <  1:4758582/35‑1 (MQ=255)
  ttAACAAATAATTATCATTATGGTGACAATtgggt                                  >  1:20241983/1‑35 (MQ=255)
  ccgccgcgcggacccgccagggttttgtgagtggt                                  <  1:3373737‑M1/3‑1 (MQ=255)
  ccgccgcgcggacccgccagggttttgtgagtggt                                  <  1:11082247‑M1/3‑1 (MQ=255)
  ccgccgcgcggacccgccagggttttgtgagtggt                                  <  1:4876347‑M1/3‑1 (MQ=255)
  aggggaacagccagcagaccaccggcgagagcGGt                                  <  1:14025910‑M1/3‑1 (MQ=255)
  aggggaacagccagcagaccaccggcgagagcGGt                                  <  1:19902738‑M1/3‑1 (MQ=255)
  aggggaacagccagcagaccaccggcgagagcGGt                                  <  1:17521371‑M1/3‑1 (MQ=255)
   tAACAAATAATTATCATTATGGTGACAATtgggtg                                 <  1:7418824/35‑1 (MQ=255)
    gggaacagccagcagaccaccggcgagagcggggg                                <  1:9458990‑M1/5‑4 (MQ=255)
    gggaacagccagcagaccaccggcgagagcGGTgg                                <  1:15688254‑M1/5‑1 (MQ=255)
    gggaacagccagcagaccaccggcgagagcGGTgg                                <  1:16657015‑M1/5‑1 (MQ=255)
    gggaacagccagcagaccaccggcgagagcGGTgg                                <  1:17413320‑M1/5‑1 (MQ=255)
    gccgcgcggacccgccagggttttgtgagtggtgg                                >  1:3320404‑M1/31‑35 (MQ=255)
    gccgcgcggacccgccagggttttgtgagtggtgg                                <  1:974071‑M1/5‑1 (MQ=255)
    aaCAAATAATTATCATTATGGTGACAATtgggtgg                                <  1:3915623/35‑1 (MQ=255)
    aaCAAATAATTATCATTATGGTGACAATtgggtgg                                >  1:6895691/1‑35 (MQ=255)
    aaCAAATAATTATCATTATGGTGACAATtgggtgg                                <  1:19011182/35‑1 (MQ=255)
     ccgcgcggacccgccagggttttgtgagtGGTggg                               <  1:8273076‑M1/6‑1 (MQ=255)
     aCAAATAATTATCATTATGGTGACAATtgggtggg                               <  1:7789657/35‑1 (MQ=255)
      gaacagccagcagaccaccggcgagagcGGTgggg                              <  1:3698596‑M1/7‑1 (MQ=255)
      gaacagccagcagaccaccggcgagagcGGTgggg                              <  1:4948007‑M1/7‑1 (MQ=255)
      cgcgcggacccgccagggttttgtgagtGGTgggg                              <  1:2147401‑M1/7‑1 (MQ=255)
      cAAATAATTATCATTATGGTGACAATTGGGTgggg                              <  1:11435677/35‑1 (MQ=255)
       ctcgcggactccggttccgtagcgggGGGAggggg                             <  1:18478999‑M1/9‑1 (MQ=255)
       aaaTAATTATCATTATGGTGACAATTGGGTggggg                             <  1:3783352/35‑1 (MQ=255)
       aaaTAATTATCATTATGGTGACAATTGGGTggggg                             <  1:12996760/35‑1 (MQ=255)
       aaaTAATTATCATTATGGTGACAATTGGGTggggg                             >  1:2604039/1‑35 (MQ=255)
        cgcggacccgccagggttttgtgagtGGTgggggg                            <  1:20111477‑M1/9‑1 (MQ=255)
        acagccagcagaccaccggcgagagcGGTgggggg                            <  1:5729844‑M1/9‑1 (MQ=255)
        acagccagcagaccaccggcgagagcGGTgggggg                            <  1:6998721‑M1/9‑1 (MQ=255)
        aataatTATCATTATGGTGACAATTGGGTgggggg                            <  1:11527886/35‑1 (MQ=255)
        aataatTATCATTATGGTGACAATTGGGTgggggg                            <  1:19773981/35‑1 (MQ=255)
         gcggacccgccagggttttgtgagtGGTggggggg                           <  1:6322682‑M1/10‑1 (MQ=255)
         gcggacccgccagggttttgtgagtGGTggggggg                           <  1:8810253‑M1/10‑1 (MQ=255)
         gcggacccgccagggttttgtgagtGGTggggggg                           <  1:15860569‑M1/10‑1 (MQ=255)
         cagccagcagaccaccggcgagcgcGGtggggggc                           <  1:11250385‑M1/10‑2 (MQ=255)
         ataatTATCATTATGGTGACAATTGGGTggggggg                           >  1:4986634/1‑35 (MQ=255)
          agccagcagaccaccggcgagagcGGTGGGGGGGa                          <  1:5202221‑M1/11‑1 (MQ=255)
           gccagcagaccaccggcgagagcGGTGGGGGGGaa                         <  1:18601162‑M1/12‑1 (MQ=255)
           aatTATCATTATGGTGACAATTGGGTGGGGGGGaa                         >  1:3066582/1‑35 (MQ=255)
           aatTATCATTATGGTGACAATTGGGTGGGGGGGaa                         <  1:2985585/35‑1 (MQ=255)
            gacccgccagggttttgtgagtggtggggggggaa                        <  1:3020221‑M1/13‑4 (MQ=255)
            gacccgccagggttttgtgagtGGTGGGGGGGaaa                        <  1:17608014‑M1/13‑1 (MQ=255)
            gacccgccagggttttgtgagtGGTGGGGGGGaaa                        <  1:9442499‑M1/13‑1 (MQ=255)
            ccagcagaccacctgcgagagcGGTGGGGGGGaaa                        <  1:523962‑M1/13‑1 (MQ=255)
            atTATCATTATGGTGACAATTGGGTGGGGGGGcaa                        >  1:7970107/1‑35 (MQ=255)
            atTATCATTATGGTGACAATTGGGTGGGGGGGaaa                        <  1:18764884/35‑1 (MQ=255)
             ttATCATTATGGTGACAATTGGGTGGGGGGGaaaa                       >  1:19540388/1‑35 (MQ=255)
             cagcagaccaccggcgagagcGGTGGGGGGGaaaa                       <  1:12077096‑M1/14‑1 (MQ=255)
             cagcagaccaccggcgagagcGGTGGGGGGGaaaa                       <  1:17314847‑M1/14‑1 (MQ=255)
             cagcagaccaccggcgagagcGGTGGGGGGGaaaa                       <  1:15597821‑M1/14‑1 (MQ=255)
             acccgccagggttttgtgagtGGTGGGGGGGgaaa                       <  1:16972737‑M1/14‑1 (MQ=255)
             acccgccagggttttgtgagtGGTGGGGGGGaaaa                       <  1:4249396‑M1/14‑1 (MQ=255)
               gcagaccaccggcgagagcGGTGGGGGggaaaaaa                     <  1:5885077‑M1/16‑3 (MQ=255)
               aTCATTATGGTGACAATTGGGTGGGGGGGAAAATa                     >  1:11419710/1‑35 (MQ=255)
                 cATTATGGTGACAATTGGGTGGGGGGGAAAATaaa                   <  1:2727823/35‑1 (MQ=255)
                   ttATGGTGACAATTGGGTGGGGGGGAAAATAAAGa                 >  1:11143085/1‑35 (MQ=255)
                    tATGGTGACAATTGGGTGGGGGGGAAAATAAAGAc                >  1:16319648/1‑35 (MQ=255)
                    tATGGTGACAATTGGGTGGGGGGGAAAATAAAGAc                >  1:13268658/1‑35 (MQ=255)
                     aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt               <  1:683481/35‑1 (MQ=255)
                     aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt               >  1:10248040/1‑35 (MQ=255)
                     aTGGTGACAATTGGGTGGGGGGGAAAATAAAGACt               <  1:1842880/35‑1 (MQ=255)
                      tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc              >  1:1272309/1‑35 (MQ=255)
                      tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc              >  1:8574493/1‑35 (MQ=255)
                      tGGTGACAATTGGGTGGGGGGGAAAATAAAGACTc              >  1:4330905/1‑35 (MQ=255)
                       ggTGACAATTGGGTGGGGGGGAAAATAAAGACTCa             >  1:11283749/1‑35 (MQ=255)
                        gTGACAATTGGGTGGGGGGGAAAATAAAGACTCAt            <  1:6624333/35‑1 (MQ=255)
                         tGACAATTGGGTGGGGGGGAAAATAAAGACTCAtt           >  1:3252817/1‑35 (MQ=255)
                          gACAATTGGGTGGGGGGGAAAATAAAGACTCATTa          <  1:13429395/35‑1 (MQ=255)
                          gACAATTGGGTGGGGGGGAAAATAAAGACTCATTa          <  1:5853947/35‑1 (MQ=255)
                          gACAATTGGGTGGGGGGGAAAATAAAGACTCATTa          >  1:16901267/1‑35 (MQ=255)
                           aCAATTGGGTGGGGGGGAAAATAAAGACTCATTAg         >  1:17780935/1‑35 (MQ=255)
                           aCAATTGGGTGGGGGGGAAAATAAAGACTCATTAg         <  1:18787402/35‑1 (MQ=255)
                            cAATTGGGTGGGGGGGAAAATAAAGACTCATTAGc        <  1:17086014/35‑1 (MQ=255)
                            cAATTGGGTGGGGGGGAAAATAAAGACTCATTAGc        <  1:4628242/35‑1 (MQ=255)
                             aaTTGGGTGGGGGGGAAAATAAAGACTCATTAGCt       <  1:18691932/35‑1 (MQ=255)
                               ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa     <  1:20591563/35‑1 (MQ=255)
                               ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa     <  1:13795807/35‑1 (MQ=255)
                               ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa     >  1:18213262/1‑35 (MQ=255)
                               ttGGGTGGGGGGGAAAATAAAGACTCATTAGCTGa     >  1:8900817/1‑35 (MQ=255)
                                tgggtgggGGGGAAAATAAAGACTCATTAGCTGaa    >  1:11822704/1‑35 (MQ=255)
                                tgggtgggGGGGAAAATAAAGACTCATTAGCTGaa    <  1:7247099/35‑1 (MQ=255)
                                 gggtgggGGGGAAAATAAAGACTCATTAGCTGAAt   >  1:12252054/1‑35 (MQ=255)
                                 gggtgggGGGGAAAATAAAGACTCATTAGCCGAAt   <  1:3486974/35‑1 (MQ=255)
                                  GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc  >  1:1234755‑M1/1‑35 (MQ=255)
                                  GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc  >  1:10535549‑M1/1‑35 (MQ=255)
                                  GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc  <  1:9170637‑M1/35‑1 (MQ=255)
                                  GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc  >  1:9026973‑M1/1‑35 (MQ=255)
                                  GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc  >  1:13457696‑M1/1‑35 (MQ=255)
                                  GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc  <  1:1436646‑M1/35‑1 (MQ=255)
                                  GGTGGGGGGGAAAATAAAGACTCATTAGCTGAATc  <  1:15359976‑M1/35‑1 (MQ=255)
                                  |                                  
GTTTAACAAATAATTATCATTATGGTGACAATTGGGTGGGGGGGAAAATAAAGACTCATTAGCTGAATC  >  REL606/422557‑422625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.