New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 1922884 = | 47 (0.460) | 13 (0.150) | 5/40 | NT | 20.9% | intergenic (+109/+232) | znuB/ruvB | high‑affinity zinc transporter membrane component/Holliday junction DNA helicase B |
? | REL606 | = 3625456 | 59 (0.690) | pseudogene (7/738 nt) | yhjQ | b3534; cell division protein (chromosome partitioning ATPase) |
GTCAGATAAGGCGCTCGCACCGCATCCGACATTGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1922921‑1922884 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGGGGGCGGGGAGG < REL606/3625456‑3625443 GTCAGATAAGGCGCTCGCACCGCATCCGACATTGG > 1:1228163/1‑35 GTCAGATAAGGCGCTCGCACCGCATCCGACATTGG > 1:13267803/1‑35 TCAGATAAGGCGCTCGCACCGCATCCGACATTGGC > 1:793743/1‑35 TCAGATAAGGCGCTCGCACCGCATCCGACATTGGC > 1:20097699/1‑35 CAGATAAGGCGCTCGCACCGCATCCGACATTGGCA > 1:8832737/1‑35 CAGATAAGGCGCTCGCACCGCATCCGACATTGGCA > 1:17004197/1‑35 AGATAAGGCGCTCGCACCGCATCCGACATTGGCAG > 1:17240123/1‑35 AGATAAGGCGCTCGCACCGCATCCGACATTGGCAG > 1:18456838/1‑35 GATAAGGCGCTCGCACCGCATCCGACATTGGCAGG > 1:9149969/1‑35 GATAAGGCGCTCGCACCGCATCCGACATTGGCAGG > 1:14173342/1‑35 GATAAGGCGCTCGCACCGCATCCGACATTGGCAGG > 1:3902908/1‑35 ATAAGGCGCTCGCACCGCATCCGACATTGGCAGGG > 1:7474017/1‑35 ATAAGGCGCTCGCACCGCATCCGACATTGGCAGGG > 1:5950794/1‑35 TAAGGCGCTCGCACCGCATCCGACATTGGCAGGGG > 1:18304673/1‑35 TAAGGCGCTCGCACCGCATCCGACATTGGCAGGGG > 1:11311602/1‑35 AAGGCGCTCGCACCGCATCCGACATTGGCAGGGGG > 1:19553644/1‑35 AAGGCGCTCGCACCGCATCCGACATTGGCAGGGGG > 1:20078317/1‑35 AAGGCGCTCGCACCGCATCCGACATTGGCAGGGGG > 1:14884796/1‑35 AGGCGCTCGCACCGCATCCGACATTGGCAGGGGGG > 1:5353572/1‑35 CGCTCGCACCTCATCCGACATTGGCAGGGGGGGCG > 1:7155740/1‑35 CGCTCGCACCGCATCCGACATTGGCAGGGGGGGtt > 1:19197238/1‑33 CGCTCGCACCGCATCCGACATTGGCAGGGGGGGgg > 1:5798921/1‑33 CGCTCGCACCGCATCCGACATTGGCAGGGGGGGCG > 1:8504143/1‑35 GCTCGCACCGCATCCGACATTGGCAGGGGGGGGGG > 1:14016257/1‑35 GCTCGCACCGCATCCGACATTGGCAGGGGGGGCGG > 1:4660374/1‑35 GCTCGCACCGCATCCGACATTGGCAGGGGGGGCGG > 1:4661286/1‑35 GCTCGCACCGCATCCGAAATTGGCAGGGGGGGCGG > 1:18603571/1‑35 CTCGCACCGCATCCGACATTGGCAGGGGGGGCGGG > 1:17216264/1‑35 TCGCACCGCATCCGACATTGGCAGGGGGGGGGGGG > 1:9065337/1‑35 TCGCACCGCATCCGAAATTGGCAGGGGGGGCGGGG > 1:9425154/1‑35 CGCACCGCATCCGACATTGGCAGGGGGGGTGGGGg > 1:9233500/1‑34 CACCGCATCCGACATTGGCAGGGGGGGCGGGGGGG > 1:15082620/1‑35 GTCAGATAAGGCGCTCGCACCGCATCCGACATTGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1922921‑1922884 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGGGGGCGGGGAGG < REL606/3625456‑3625443 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |