New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3686152 | 55 (0.540) | 7 (0.070) | 3/46 | NT | 10.7% | coding (410/741 nt) | yiaT | hypothetical protein |
? | REL606 | = 4031953 | 64 (0.650) | intergenic (+238/+174) | hemN/glnG | coproporphyrinogen III oxidase/fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
CTCCCCCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3686142‑3686152 ‑‑‑‑‑‑‑‑‑‑cTGCCGTTGCTGCCGTGCTGTGTGCCGCAATGATT < REL606/4031953‑4031920 acCCCCCACCCTGCCGTTGCTGCCGTGCTGTGTGC < 1:2349439/33‑1 CCCCCCCCCTGCCGTTGCTGCCGTGCTGTGTGCCG < 1:10378141/35‑1 CCCCCCCCCTGCCGTTGCTGCCGTGCTGTGTGCCG < 1:14410961/35‑1 CCCCCACCCTGCCGTTGCTGCCGTGCTGTGTGCCG < 1:1885187/35‑1 CCCCCACCCTGCCGTTGCTGCCGTGCTGTGTGCCG < 1:20033640/35‑1 CCCCCCCCTGCCGTTGCTGCCGTGCTGTGTGCCGC < 1:6030464/35‑1 CCCCCCCTGCCGTTGCTGCCGTGCTGTGTGCCGCA < 1:7530558/35‑1 cccCCCTGCCGTTGCTGCCGTGCTGTGTGCCGCAA < 1:10642301/32‑1 cccCCCTGCCGTTGCTGCCGTGCTGTGTGCCGCAA < 1:806310/32‑1 CCACCCTGCCGTTGCTGCCGTGCTGTGTGCCGCAA < 1:7450614/35‑1 cCCCGGCCGTTGCTGCCGTGCTGTGTGCCGCAATG < 1:19018751/34‑1 CCTGCCGTTGCTGCCGTGCTGTGTGCCGCAATGAT < 1:18283994/35‑1 CTGCCGTTGCTGCCGTGCTGTGTGCCGCAATGATT < 1:10761643/35‑1 CTGCCGTTGCTGCCGTGCTGTGTGCCGCAATGATT < 1:16391651/35‑1 CTGCCGTTGCTGCCGTGCTGTGTGCCGCAATGATT < 1:19367888/35‑1 CTCCCCCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3686142‑3686152 ‑‑‑‑‑‑‑‑‑‑cTGCCGTTGCTGCCGTGCTGTGTGCCGCAATGATT < REL606/4031953‑4031920 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |