New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 734239 = | 59 (0.570) | 18 (0.180) | 6/48 | NT | 29.0% | coding (1021/1284 nt) | gltA | citrate synthase |
? | REL606 | 1556579 = | 29 (0.280) | intergenic (‑104/+298) | ydeN/ydeO | hypothetical protein/predicted DNA‑binding transcriptional acfivator |
AAGTTAGTCACATAAAGAGATAGCAGATTTAGCTAAAAAAAGGGAAATAACAGTCCATAAAGCGTTGAC > REL606/1556545‑1556613 | ctgggcacgaaggatgacctgctggaagtggctaa > 1:9766914‑M2/35‑35 (MQ=255) ctgggcacgaaggatgacctgctggaagtggctaa > 1:4851503‑M2/35‑35 (MQ=255) ctgggcacaaaggatgacctgctggaagtggctaa > 1:19130757‑M2/35‑35 (MQ=255) aaGTTAGTCACATAAAGAGATAGCAGATTTAGCTa < 1:6285453/35‑1 (MQ=255) aaGTTAGTCACATAAAGAGATAGCAGATTTAGCTa < 1:329276/35‑1 (MQ=255) aaGTTAGTCACATAAAGAGATAGCAGATTTAGCTa < 1:19561541/35‑1 (MQ=255) aaGTTAGTCACATAAAGAGATAGCAGATTTAGCTa > 1:6657668/1‑35 (MQ=255) aaGTTAGTCACATAAAGAGATAGCAGATTTAGCTa < 1:14085723/35‑1 (MQ=255) tgggcacgaaggatgacctgctggaagtggctaaa > 1:5725825‑M2/34‑35 (MQ=255) tgggcacgaaggatgacctgctggaagtggctaaa > 1:3419595‑M2/34‑35 (MQ=255) tgggcacgaaggatgacctgctggaagtggctaaa > 1:16176944‑M2/34‑35 (MQ=255) tgggcacgaaggatgacctgctggaagtggctaaa > 1:12812535‑M2/34‑35 (MQ=255) aGTTATTCACATAAAGAGATAGCAGATTTAGCTaa < 1:12717219/35‑1 (MQ=255) aGTTAGTCACATAAAGAGATAGCAGATTTAGCTaa < 1:19863975/35‑1 (MQ=255) aGTTAGTCACATAAAGAGATAGCAGATTTAGCTaa < 1:1490379/35‑1 (MQ=255) aGTTAGTCACATAAAGAGATAGCAGATTTAGCTaa < 1:18790403/35‑1 (MQ=255) gggcacgaaggatgacctgctggaagtggctaaaa > 1:14204160‑M2/33‑35 (MQ=255) gTTAGTCACATAAAGAGATAGCAGATTTAGCTaaa > 1:8367586/1‑35 (MQ=255) ttAGTCACATAAAGAGATAGCAGATTTAGCTaaaa > 1:3277523/1‑35 (MQ=255) ttAGTCACATAAAGAGATAGCAGATTTAGCTaaaa > 1:1897956/1‑35 (MQ=255) ttAGTCACATAAAGAGATAGCAGATTTAGCTaaaa > 1:13872514/1‑35 (MQ=255) ggcacgaaggatgacctgctggaagtggctaaaaa > 1:7722065‑M2/32‑35 (MQ=255) tAGTCACATAAAGAGATAGCAGATTTAGCTaaaaa < 1:18457242/35‑1 (MQ=255) tAGTCACATAAAGAGATAGCAGATTTAGCTaaaaa < 1:16144655/35‑1 (MQ=255) gcacgaaggatgacctgctggaagtggctaaaaaa > 1:256071‑M2/31‑35 (MQ=255) cacgaaggatgacctgctggaagtggctaaaaaga > 1:11515633‑M2/30‑33 (MQ=255) cacgaaggatgacctgctggaagtggctaaaaaaa > 1:5806688‑M2/30‑35 (MQ=255) cacgaaggatgacctgctggaagtggctaaaaaaa > 1:9510464‑M2/30‑35 (MQ=255) cacgaaggatgacctgctggaagtggctaaaaaaa > 1:16940476‑M2/30‑35 (MQ=255) cacgaaggatgacctgctggaagtggctaaaaaaa > 1:13001542‑M2/30‑35 (MQ=255) gTCACATAAAGAGATAGCAGATTTAGCTaaaaaaa > 1:2788155/1‑35 (MQ=255) acgaaggatgacctgctggaagtggctaaaaagaa > 1:15601973‑M2/29‑35 (MQ=255) acgaaggatgacctgctggaagtggctaaaaaaaa > 1:6120905‑M2/29‑35 (MQ=255) tCACATAAAGAGATAGCAGATTTAGCTaaaaaagg < 1:1304798/35‑3 (MQ=255) cgaaggatgacctgctggaagtggctaaaaaaaaa > 1:9095395‑M2/28‑34 (MQ=255) cgaaggatgacctgctggaagtggctaAAAAAAAg > 1:17533132‑M2/28‑35 (MQ=255) cacaTAAAGAGATAGCAGATTTAGCTAAAAAAAgg < 1:19749627/35‑1 (MQ=255) cacaTAAAGAGATAGCAGATTTAGCTAAAAAAAgg < 1:17858688/35‑1 (MQ=255) cacaTAAAGAGATAGCAGATTTAGCTAAAAAAAgg > 1:3674320/1‑35 (MQ=255) acaTAAAGAGATAGCAGATTTAGCTAAAAAAAggg > 1:18579728/1‑35 (MQ=255) acaTAAAGAGATAGCAGATTTAGCTAAAAAAAggg > 1:17878378/1‑35 (MQ=255) aaggatgacctgctggaagtggctaAAAAAGagga > 1:912370‑M2/26‑34 (MQ=255) aaggatgacctgctggaagtggctaAAAAAGAggg > 1:13719390‑M2/26‑35 (MQ=255) aaggatgacctgctggaagtggctaAAAAAAGggg > 1:18182106‑M2/26‑35 (MQ=255) aTAAAGAGATAGCAGATTTAGCTAAAAAAAGGGaa > 1:19413722/1‑35 (MQ=255) aTAAAGAGATAGCAGATTTAGCTAAAAAAAGGGaa > 1:18058722/1‑35 (MQ=255) tAAAGAGATAGCAGATTTAGCTAAAAAAAGGGaaa < 1:10231030/35‑1 (MQ=255) gatgacctgctggaagtggctaAAAAAAGGGGaaa > 1:12733759‑M2/23‑35 (MQ=255) gatgacctgctggaagtggctaAAAAAAAGGGaaa > 1:740683‑M2/23‑35 (MQ=255) gatgacctgctggaagtggctaAAAAAAAAGGaaa > 1:10771‑M2/23‑35 (MQ=255) atgacctgctggaagtggctaAAAAAAAGGgaaaa > 1:2789605‑M2/22‑34 (MQ=255) atgacctgctggaagtggctaAAAAAAAGGgaaaa > 1:7359520‑M2/22‑34 (MQ=255) aaaGAGATAGCAGATTTAGCTAAAAAAAGGGAAAt > 1:4438776/1‑35 (MQ=255) tgacctgctggaagtggctaAAAAAAAGggaaaaa > 1:8491449‑M2/21‑33 (MQ=255) aaGAGATAGCAGATTTAGCTAAAAAAAGGGAAATa < 1:12441915/35‑1 (MQ=255) aaGAGATAGCAGATTTAGCTAAAAAAAGGGAAATa > 1:15862915/1‑35 (MQ=255) gacctgctggaagtggctaAAAAAAAGGGAAAAaa > 1:1525721‑M2/20‑35 (MQ=255) agagATAGCAGATTTAGCTAAAAAAAGGGAAATaa > 1:17705843/1‑35 (MQ=255) gagaTAGCAGATTTAGCTAAAAAAAGGGAAATAAc < 1:4094514/35‑1 (MQ=255) gaTAGCAGATTTAGCTAAAAAAAGGGAAATAACAg > 1:10009258/1‑35 (MQ=255) aTAGCAGATTTAGCTAAAAAAAGGGAAATAACAGt < 1:332218/35‑1 (MQ=255) aTAGCAGATTTAGCTAAAAAAAGGGAAATAACAGt < 1:17855724/35‑1 (MQ=255) aTAGCAGATTTAGCTAAAAAAAGGGAAATAACAGt < 1:9161699/35‑1 (MQ=255) gCAGATTTAGCTAAAAAAAGGGAAATAACAGTCCa > 1:4960472/1‑35 (MQ=255) gCAGATTTAGCTAAAAAAAGGGAAATAACAGTCCa > 1:12751139/1‑35 (MQ=255) cAGATTTAGCTAAAAAAAGGGAAATAACAGTCCAt < 1:4810098/35‑1 (MQ=255) cAGATTTAGCTAAAAAAAGGGAAATAACAGTCCAt > 1:10299290/1‑35 (MQ=255) cAGATTTAGCTAAAAAAAGGGAAATAACAGTCCAt < 1:16494274/35‑1 (MQ=255) cAGATTTAGCTAAAAAAAGGGAAATAACAGTCCAt < 1:1251243/35‑1 (MQ=255) aGATTTAGCTAAAAAAAGGGAAATAACAGTCCATa < 1:14261348/35‑1 (MQ=255) aGATTTAGCTAAAAAAAGGGAAATAACAGTCCATa < 1:1649023/35‑1 (MQ=255) gATTTAGCTAAAAAAAGGGAAATAACAGTCCATaa > 1:18929326/1‑35 (MQ=255) tttAGCTAAAAAAAGGGAAATAACAGTCCATAAAg < 1:5717349/35‑1 (MQ=255) cTAAAAAAAGGGAAATAACAGTCCATAAAGCGTTg < 1:1199236/35‑1 (MQ=255) tAAAAAAAGGGAAATAACAGTCCATAAAGCGTTGa > 1:9162881/1‑35 (MQ=255) tAAAAAAAGGGAAATAACAGTCCATAAAGCGTTGa < 1:9334881/35‑1 (MQ=255) aaaaaaaGGGAAATAACAGTCCATAAAGCGTTGAc < 1:7455478/35‑1 (MQ=255) | AAGTTAGTCACATAAAGAGATAGCAGATTTAGCTAAAAAAAGGGAAATAACAGTCCATAAAGCGTTGAC > REL606/1556545‑1556613 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |